Query 001371
Match_columns 1091
No_of_seqs 447 out of 3479
Neff 8.5
Searched_HMMs 29240
Date Tue Mar 26 00:43:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001371.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001371hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 100.0 7E-151 3E-155 1484.7 114.1 1040 40-1088 56-1122(1321)
2 3g5u_A MCG1178, multidrug resi 100.0 1E-132 4E-137 1308.7 101.3 1027 43-1088 32-1076(1284)
3 4f4c_A Multidrug resistance pr 100.0 1.3E-95 4E-100 960.4 54.9 578 43-625 737-1319(1321)
4 3qf4_A ABC transporter, ATP-bi 100.0 3.5E-90 1.2E-94 841.5 72.4 571 44-623 9-579 (587)
5 4a82_A Cystic fibrosis transme 100.0 1.2E-89 4.1E-94 837.0 67.0 571 46-622 2-576 (578)
6 3qf4_B Uncharacterized ABC tra 100.0 1.2E-89 4.2E-94 839.3 66.8 570 44-624 23-592 (598)
7 3b5x_A Lipid A export ATP-bind 100.0 1.5E-86 5.3E-91 811.1 76.8 568 45-623 12-580 (582)
8 2yl4_A ATP-binding cassette SU 100.0 9.3E-87 3.2E-91 815.1 74.1 575 46-624 7-585 (595)
9 3b60_A Lipid A export ATP-bind 100.0 1.9E-86 6.7E-91 810.2 72.2 567 45-622 12-579 (582)
10 3g5u_A MCG1178, multidrug resi 100.0 1.2E-82 4.1E-87 835.3 59.5 581 44-626 691-1274(1284)
11 3nh6_A ATP-binding cassette SU 100.0 4.9E-66 1.7E-70 572.3 26.5 277 344-624 15-291 (306)
12 2ff7_A Alpha-hemolysin translo 100.0 9.3E-55 3.2E-59 470.9 30.9 239 383-622 7-245 (247)
13 2ghi_A Transport protein; mult 100.0 4.9E-54 1.7E-58 469.0 29.6 240 382-623 16-255 (260)
14 2ixe_A Antigen peptide transpo 100.0 5.2E-53 1.8E-57 463.3 27.8 240 382-622 15-257 (271)
15 1mv5_A LMRA, multidrug resista 100.0 5.6E-54 1.9E-58 464.8 19.1 235 384-621 2-237 (243)
16 3gd7_A Fusion complex of cysti 100.0 1.8E-51 6.1E-56 469.7 26.9 234 381-617 17-250 (390)
17 2cbz_A Multidrug resistance-as 100.0 1.4E-50 4.8E-55 435.8 23.9 225 383-623 3-230 (237)
18 2pze_A Cystic fibrosis transme 100.0 2.7E-50 9.2E-55 431.6 25.4 221 382-618 5-226 (229)
19 3tui_C Methionine import ATP-b 100.0 6E-48 2.1E-52 433.6 21.8 225 382-617 23-261 (366)
20 3gfo_A Cobalt import ATP-bindi 100.0 1.3E-47 4.3E-52 419.8 21.0 215 383-610 7-234 (275)
21 3tif_A Uncharacterized ABC tra 100.0 6.8E-48 2.3E-52 414.3 17.4 215 384-608 2-233 (235)
22 1ji0_A ABC transporter; ATP bi 100.0 7.6E-47 2.6E-51 407.8 22.4 219 383-610 6-229 (240)
23 2bbs_A Cystic fibrosis transme 100.0 1.1E-46 3.9E-51 415.4 21.7 209 382-610 39-248 (290)
24 2olj_A Amino acid ABC transpor 100.0 1.4E-46 4.8E-51 409.2 20.9 214 383-610 24-249 (263)
25 4g1u_C Hemin import ATP-bindin 100.0 2.3E-46 7.8E-51 409.1 21.5 213 383-609 11-237 (266)
26 3fvq_A Fe(3+) IONS import ATP- 100.0 3.5E-46 1.2E-50 419.6 22.9 221 383-617 4-236 (359)
27 3rlf_A Maltose/maltodextrin im 100.0 3.1E-46 1E-50 422.7 20.6 219 383-617 3-231 (381)
28 1b0u_A Histidine permease; ABC 100.0 6.3E-46 2.2E-50 405.4 21.4 214 383-610 6-243 (262)
29 1vpl_A ABC transporter, ATP-bi 100.0 5.7E-46 1.9E-50 403.2 20.3 213 382-609 14-235 (256)
30 2yz2_A Putative ABC transporte 100.0 1.3E-45 4.5E-50 404.2 23.3 213 384-610 3-228 (266)
31 2pcj_A ABC transporter, lipopr 100.0 4.7E-46 1.6E-50 397.3 18.3 208 383-604 4-223 (224)
32 1g6h_A High-affinity branched- 100.0 2E-45 6.7E-50 401.0 22.0 210 383-606 7-239 (257)
33 2yyz_A Sugar ABC transporter, 100.0 3E-45 1E-49 413.8 23.2 217 383-615 3-229 (359)
34 2ihy_A ABC transporter, ATP-bi 100.0 1.3E-45 4.4E-50 405.6 19.3 213 383-609 21-252 (279)
35 1z47_A CYSA, putative ABC-tran 100.0 2.3E-45 7.7E-50 413.6 21.2 219 382-615 13-241 (355)
36 2it1_A 362AA long hypothetical 100.0 1.7E-45 5.8E-50 416.3 20.1 217 383-615 3-229 (362)
37 2onk_A Molybdate/tungstate ABC 100.0 3.3E-45 1.1E-49 393.6 19.7 208 384-610 2-217 (240)
38 2qi9_C Vitamin B12 import ATP- 100.0 7E-45 2.4E-49 393.0 22.3 207 384-609 5-222 (249)
39 1v43_A Sugar-binding transport 100.0 7.4E-45 2.5E-49 412.5 23.4 217 383-615 11-237 (372)
40 3d31_A Sulfate/molybdate ABC t 100.0 4.9E-45 1.7E-49 410.9 21.6 215 384-615 2-223 (348)
41 1oxx_K GLCV, glucose, ABC tran 100.0 3.7E-45 1.3E-49 413.8 20.3 218 384-615 4-236 (353)
42 1g29_1 MALK, maltose transport 100.0 1.1E-44 3.6E-49 412.4 19.7 216 384-615 4-235 (372)
43 2d2e_A SUFC protein; ABC-ATPas 100.0 6E-45 2.1E-49 395.5 16.6 209 384-606 4-230 (250)
44 2zu0_C Probable ATP-dependent 100.0 2.4E-43 8.2E-48 386.1 24.5 212 383-608 20-253 (267)
45 2pjz_A Hypothetical protein ST 100.0 8E-44 2.7E-48 387.5 19.2 209 384-610 2-216 (263)
46 2nq2_C Hypothetical ABC transp 100.0 1.1E-43 3.9E-48 385.2 18.1 199 384-609 5-217 (253)
47 1sgw_A Putative ABC transporte 100.0 7.7E-43 2.6E-47 367.8 15.1 196 383-599 10-211 (214)
48 3qf4_A ABC transporter, ATP-bi 100.0 3.4E-35 1.2E-39 357.5 43.2 368 715-1088 19-386 (587)
49 3qf4_B Uncharacterized ABC tra 100.0 9.2E-35 3.2E-39 354.9 42.5 367 714-1088 32-398 (598)
50 2yl4_A ATP-binding cassette SU 100.0 5.9E-34 2E-38 348.2 45.0 370 716-1088 16-387 (595)
51 2v9p_A Replication protein E1; 100.0 1.1E-40 3.7E-45 367.7 -16.5 236 317-623 39-276 (305)
52 3b5x_A Lipid A export ATP-bind 100.0 2.9E-33 1E-37 341.2 45.9 362 718-1088 24-386 (582)
53 4a82_A Cystic fibrosis transme 100.0 8E-34 2.7E-38 345.5 38.7 369 716-1088 11-384 (578)
54 3b60_A Lipid A export ATP-bind 100.0 3.6E-33 1.2E-37 340.3 42.6 363 717-1088 23-386 (582)
55 2iw3_A Elongation factor 3A; a 100.0 3.8E-34 1.3E-38 356.0 15.7 198 383-603 671-981 (986)
56 3bk7_A ABC transporter ATP-bin 100.0 3.9E-34 1.3E-38 346.2 14.5 199 383-609 357-563 (607)
57 1yqt_A RNAse L inhibitor; ATP- 100.0 3.3E-34 1.1E-38 343.8 13.5 199 383-609 287-493 (538)
58 3ozx_A RNAse L inhibitor; ATP 100.0 8.1E-34 2.8E-38 339.1 15.6 199 383-608 269-476 (538)
59 3bk7_A ABC transporter ATP-bin 100.0 6.8E-33 2.3E-37 335.3 12.8 197 383-596 83-304 (607)
60 3j16_B RLI1P; ribosome recycli 100.0 1.2E-32 4.2E-37 332.2 13.8 198 387-610 350-560 (608)
61 2iw3_A Elongation factor 3A; a 100.0 3.1E-31 1.1E-35 330.0 25.5 197 382-609 434-635 (986)
62 1yqt_A RNAse L inhibitor; ATP- 100.0 1.3E-32 4.3E-37 330.1 11.0 196 384-596 21-234 (538)
63 3ux8_A Excinuclease ABC, A sub 100.0 4.1E-32 1.4E-36 336.8 15.3 204 399-611 31-300 (670)
64 3ux8_A Excinuclease ABC, A sub 100.0 6.1E-32 2.1E-36 335.2 16.8 201 399-610 335-641 (670)
65 3pih_A Uvrabc system protein A 100.0 2.7E-31 9.2E-36 330.9 18.9 207 400-617 598-909 (916)
66 3j16_B RLI1P; ribosome recycli 100.0 1.9E-30 6.7E-35 313.1 14.8 196 388-598 82-299 (608)
67 3ozx_A RNAse L inhibitor; ATP 100.0 8.6E-31 2.9E-35 313.0 8.6 193 387-597 3-214 (538)
68 2vf7_A UVRA2, excinuclease ABC 100.0 1.3E-29 4.5E-34 313.3 16.6 210 382-610 501-828 (842)
69 2r6f_A Excinuclease ABC subuni 100.0 8.2E-29 2.8E-33 305.3 18.5 214 383-616 629-948 (972)
70 2npi_A Protein CLP1; CLP1-PCF1 100.0 1.7E-32 5.7E-37 321.2 -14.1 179 404-609 130-338 (460)
71 4aby_A DNA repair protein RECN 100.0 5.4E-29 1.8E-33 292.6 13.7 202 400-602 49-381 (415)
72 2ygr_A Uvrabc system protein A 100.0 2.8E-28 9.5E-33 301.9 18.5 209 383-610 647-961 (993)
73 1e69_A Chromosome segregation 99.9 1.3E-26 4.5E-31 261.8 15.8 193 404-598 17-301 (322)
74 3b85_A Phosphate starvation-in 99.9 6.4E-28 2.2E-32 253.2 -4.3 158 399-597 13-171 (208)
75 1z6g_A Guanylate kinase; struc 99.9 9.3E-29 3.2E-33 263.2 -12.1 166 400-595 11-193 (218)
76 4gp7_A Metallophosphoesterase; 99.9 4.7E-25 1.6E-29 225.4 4.0 149 404-590 1-168 (171)
77 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 1.3E-23 4.5E-28 240.5 15.8 83 518-600 275-364 (365)
78 1ye8_A Protein THEP1, hypothet 99.9 1.9E-25 6.4E-30 229.0 -0.4 147 414-600 2-159 (178)
79 2pt7_A CAG-ALFA; ATPase, prote 99.9 6.7E-26 2.3E-30 255.4 -4.7 140 386-597 151-291 (330)
80 2dpy_A FLII, flagellum-specifi 99.9 3.5E-25 1.2E-29 257.9 -7.0 195 382-609 130-344 (438)
81 1tq4_A IIGP1, interferon-induc 99.9 1.1E-24 3.9E-29 250.1 -5.7 167 399-590 36-247 (413)
82 2vf7_A UVRA2, excinuclease ABC 99.9 5.9E-22 2E-26 245.2 16.4 95 516-610 373-476 (842)
83 2f1r_A Molybdopterin-guanine d 99.9 4.9E-24 1.7E-28 216.1 -5.5 111 413-544 3-125 (171)
84 2eyu_A Twitching motility prot 99.8 1.8E-24 6.2E-29 235.4 -12.4 182 385-582 7-241 (261)
85 2ewv_A Twitching motility prot 99.8 5.1E-24 1.7E-28 244.1 -11.9 175 400-583 126-353 (372)
86 3aez_A Pantothenate kinase; tr 99.8 1.6E-23 5.4E-28 233.7 -8.1 141 380-555 40-209 (312)
87 2o5v_A DNA replication and rep 99.8 2E-20 6.9E-25 211.7 14.5 82 522-608 265-355 (359)
88 3sop_A Neuronal-specific septi 99.8 1.4E-22 4.6E-27 221.8 -3.4 147 414-585 4-154 (270)
89 3b9q_A Chloroplast SRP recepto 99.8 2.5E-22 8.5E-27 223.0 -2.5 174 402-598 90-284 (302)
90 1lvg_A Guanylate kinase, GMP k 99.8 4.6E-23 1.6E-27 215.8 -10.6 159 409-595 1-173 (198)
91 2og2_A Putative signal recogni 99.8 1.5E-21 5.3E-26 220.3 -1.7 173 403-598 148-341 (359)
92 2i3b_A HCR-ntpase, human cance 99.8 7.9E-22 2.7E-26 203.6 -4.3 159 412-602 1-169 (189)
93 1znw_A Guanylate kinase, GMP k 99.8 1.1E-21 3.9E-26 206.9 -4.7 168 398-594 8-202 (207)
94 2obl_A ESCN; ATPase, hydrolase 99.8 1E-20 3.5E-25 213.8 -1.3 195 383-609 45-255 (347)
95 3pih_A Uvrabc system protein A 99.8 1.6E-19 5.6E-24 225.2 7.6 166 431-611 387-562 (916)
96 1lw7_A Transcriptional regulat 99.8 2.1E-20 7.1E-25 215.0 -3.9 148 401-550 157-329 (365)
97 3qkt_A DNA double-strand break 99.7 1.5E-17 5E-22 189.0 18.1 78 520-597 246-332 (339)
98 4ad8_A DNA repair protein RECN 99.7 3.4E-18 1.2E-22 205.4 13.1 77 521-597 395-474 (517)
99 1tf7_A KAIC; homohexamer, hexa 99.7 6.7E-20 2.3E-24 220.7 -3.3 168 398-597 24-211 (525)
100 3asz_A Uridine kinase; cytidin 99.7 2E-20 6.9E-25 198.1 -7.5 141 408-581 2-161 (211)
101 2gza_A Type IV secretion syste 99.7 9E-22 3.1E-26 224.9 -19.3 149 385-536 137-301 (361)
102 1cr0_A DNA primase/helicase; R 99.7 2E-18 6.9E-23 192.7 8.1 181 400-598 23-237 (296)
103 2r6f_A Excinuclease ABC subuni 99.7 5E-18 1.7E-22 209.7 9.5 152 436-610 432-601 (972)
104 2o8b_B DNA mismatch repair pro 99.7 3.7E-18 1.3E-22 217.1 8.2 172 382-606 749-939 (1022)
105 1f2t_B RAD50 ABC-ATPase; DNA d 99.7 3.1E-17 1.1E-21 161.6 11.1 88 511-598 41-142 (148)
106 2jeo_A Uridine-cytidine kinase 99.7 3.8E-19 1.3E-23 192.7 -2.8 166 398-608 11-186 (245)
107 1pzn_A RAD51, DNA repair and r 99.7 1.9E-18 6.4E-23 196.4 1.9 167 400-608 118-314 (349)
108 1tf7_A KAIC; homohexamer, hexa 99.7 3.1E-17 1.1E-21 197.4 11.0 152 406-597 275-444 (525)
109 1w1w_A Structural maintenance 99.7 3.8E-17 1.3E-21 192.0 10.7 73 522-594 333-410 (430)
110 2ygr_A Uvrabc system protein A 99.7 1.4E-16 4.9E-21 197.7 14.7 136 470-610 465-618 (993)
111 1ewq_A DNA mismatch repair pro 99.7 2.7E-17 9.2E-22 203.0 7.3 158 381-600 548-715 (765)
112 1odf_A YGR205W, hypothetical 3 99.7 4E-19 1.4E-23 196.1 -8.2 129 411-557 30-169 (290)
113 4a74_A DNA repair and recombin 99.7 2.5E-17 8.7E-22 176.5 5.8 147 408-596 21-200 (231)
114 3szr_A Interferon-induced GTP- 99.7 1E-18 3.6E-23 212.7 -6.9 191 383-609 10-237 (608)
115 1pui_A ENGB, probable GTP-bind 99.7 9E-18 3.1E-22 177.3 1.1 169 384-569 4-197 (210)
116 3thx_A DNA mismatch repair pro 99.7 3.7E-16 1.2E-20 196.2 15.0 168 382-608 630-812 (934)
117 2ehv_A Hypothetical protein PH 99.6 1.5E-17 5E-22 180.8 0.7 181 384-595 7-207 (251)
118 3jvv_A Twitching mobility prot 99.6 4.2E-17 1.4E-21 184.7 4.1 147 387-596 92-246 (356)
119 1rj9_A FTSY, signal recognitio 99.6 7.9E-17 2.7E-21 178.8 5.6 149 411-583 101-260 (304)
120 2qag_C Septin-7; cell cycle, c 99.6 2.3E-17 7.8E-22 190.3 0.3 166 382-584 10-180 (418)
121 3kta_B Chromosome segregation 99.6 6.6E-16 2.3E-20 156.2 10.7 79 520-598 62-146 (173)
122 2qnr_A Septin-2, protein NEDD5 99.6 3.3E-17 1.1E-21 182.4 -2.1 162 387-582 2-168 (301)
123 3c8u_A Fructokinase; YP_612366 99.6 3.1E-18 1.1E-22 180.7 -13.6 150 409-582 19-184 (208)
124 1s96_A Guanylate kinase, GMP k 99.5 6.5E-16 2.2E-20 163.3 1.9 141 407-609 11-160 (219)
125 2w0m_A SSO2452; RECA, SSPF, un 99.5 3.3E-15 1.1E-19 160.2 7.2 166 399-597 9-193 (235)
126 1nij_A Hypothetical protein YJ 99.5 6.6E-17 2.3E-21 181.7 -7.9 142 413-581 5-189 (318)
127 3thx_B DNA mismatch repair pro 99.5 6.5E-15 2.2E-19 184.3 7.2 167 383-598 640-814 (918)
128 2qag_B Septin-6, protein NEDD5 99.5 3.5E-15 1.2E-19 170.9 4.0 179 383-579 16-217 (427)
129 1zp6_A Hypothetical protein AT 99.5 9.3E-16 3.2E-20 159.3 -2.1 136 408-565 5-144 (191)
130 2cvh_A DNA repair and recombin 99.5 2.7E-14 9.2E-19 151.7 8.7 151 400-596 7-185 (220)
131 1wb9_A DNA mismatch repair pro 99.5 1E-14 3.4E-19 181.2 5.6 165 383-601 577-750 (800)
132 1nlf_A Regulatory protein REPA 99.5 6.1E-14 2.1E-18 154.9 11.1 151 408-584 26-184 (279)
133 1n0w_A DNA repair protein RAD5 99.4 2.2E-13 7.5E-18 147.0 9.8 148 408-596 20-209 (243)
134 2qm8_A GTPase/ATPase; G protei 99.4 2.9E-15 9.9E-20 169.3 -7.7 178 384-568 30-258 (337)
135 2yhs_A FTSY, cell division pro 99.4 2.6E-13 8.7E-18 157.1 6.9 155 402-579 283-447 (503)
136 2bdt_A BH3686; alpha-beta prot 99.3 3.6E-16 1.2E-20 162.2 -19.1 166 412-608 2-183 (189)
137 1p9r_A General secretion pathw 99.3 4.9E-15 1.7E-19 171.1 -12.3 128 401-545 158-314 (418)
138 2rcn_A Probable GTPase ENGC; Y 99.3 7.1E-13 2.4E-17 148.9 5.2 123 400-538 204-329 (358)
139 3auy_A DNA double-strand break 99.3 2.6E-12 9E-17 147.5 9.8 74 521-594 279-359 (371)
140 1htw_A HI0065; nucleotide-bind 99.3 1.9E-13 6.4E-18 136.5 -1.0 88 387-483 11-99 (158)
141 2bbw_A Adenylate kinase 4, AK4 99.3 2.1E-13 7E-18 147.7 -1.7 166 411-595 26-218 (246)
142 2oap_1 GSPE-2, type II secreti 99.3 1.6E-14 5.6E-19 171.2 -11.5 171 400-586 248-455 (511)
143 1sxj_E Activator 1 40 kDa subu 99.3 2.3E-12 7.8E-17 147.4 6.2 138 414-584 38-177 (354)
144 3lda_A DNA repair protein RAD5 99.2 1.2E-11 4E-16 142.0 9.8 146 408-596 174-363 (400)
145 3e70_C DPA, signal recognition 99.2 2.6E-13 9E-18 151.8 -4.4 147 408-580 125-278 (328)
146 2kjq_A DNAA-related protein; s 99.2 1.6E-11 5.4E-16 121.5 7.3 91 401-580 30-124 (149)
147 3lnc_A Guanylate kinase, GMP k 99.2 1.6E-13 5.5E-18 147.0 -9.4 160 400-592 15-191 (231)
148 2x8a_A Nuclear valosin-contain 99.2 1.4E-13 5E-18 150.9 -10.9 129 400-551 34-164 (274)
149 2yv5_A YJEQ protein; hydrolase 99.2 3.3E-12 1.1E-16 142.1 -0.2 115 407-535 160-300 (302)
150 3nh6_A ATP-binding cassette SU 99.1 7.6E-12 2.6E-16 138.3 0.9 83 1003-1088 15-97 (306)
151 1cke_A CK, MSSA, protein (cyti 99.1 1.6E-12 5.4E-17 138.8 -5.1 129 411-551 4-151 (227)
152 3ec2_A DNA replication protein 99.1 3.5E-11 1.2E-15 123.4 4.7 111 406-582 32-144 (180)
153 1udx_A The GTP-binding protein 99.0 1.2E-10 4.1E-15 134.1 4.9 153 402-579 147-306 (416)
154 3tr0_A Guanylate kinase, GMP k 99.0 5.1E-10 1.7E-14 117.1 7.6 139 406-548 1-171 (205)
155 4e22_A Cytidylate kinase; P-lo 99.0 4.8E-11 1.6E-15 129.3 -0.3 109 400-518 18-144 (252)
156 1u0l_A Probable GTPase ENGC; p 99.0 1E-10 3.5E-15 130.1 2.3 102 407-509 164-289 (301)
157 1sq5_A Pantothenate kinase; P- 98.9 2.8E-11 9.6E-16 135.2 -4.6 140 381-555 35-199 (308)
158 3a00_A Guanylate kinase, GMP k 98.9 1.8E-10 6.2E-15 118.7 0.7 128 412-548 1-169 (186)
159 3ney_A 55 kDa erythrocyte memb 98.9 3.4E-10 1.2E-14 116.4 2.2 82 407-497 14-108 (197)
160 1vma_A Cell division protein F 98.9 9.5E-10 3.3E-14 121.7 5.0 98 405-551 97-197 (306)
161 2px0_A Flagellar biosynthesis 98.9 2.2E-09 7.4E-14 118.6 7.9 138 410-600 103-246 (296)
162 1t9h_A YLOQ, probable GTPase E 98.9 1.4E-10 4.9E-15 127.9 -1.9 95 407-503 168-287 (307)
163 3euj_A Chromosome partition pr 98.8 8.1E-10 2.8E-14 128.7 3.3 80 385-470 8-95 (483)
164 1iy2_A ATP-dependent metallopr 98.8 2.4E-11 8.1E-16 134.0 -9.7 136 385-549 51-194 (278)
165 1ls1_A Signal recognition part 98.8 4.2E-09 1.5E-13 116.4 8.1 132 384-568 77-209 (295)
166 1ni3_A YCHF GTPase, YCHF GTP-b 98.8 2.6E-11 8.8E-16 138.3 -11.1 169 408-605 16-209 (392)
167 1ixz_A ATP-dependent metallopr 98.8 2.4E-11 8.2E-16 132.0 -11.1 139 384-551 26-172 (254)
168 2v9p_A Replication protein E1; 98.7 1.1E-10 3.8E-15 128.5 -8.3 85 997-1088 59-143 (305)
169 2dr3_A UPF0273 protein PH0284; 98.7 1.1E-08 3.8E-13 110.1 6.4 170 400-595 10-196 (247)
170 1in4_A RUVB, holliday junction 98.7 4.8E-11 1.7E-15 135.0 -13.0 155 386-569 21-193 (334)
171 3gd7_A Fusion complex of cysti 98.7 7.4E-09 2.5E-13 118.1 4.8 51 1037-1088 14-64 (390)
172 2dy1_A Elongation factor G; tr 98.7 9.8E-09 3.3E-13 126.3 5.9 132 406-583 3-138 (665)
173 2ixe_A Antigen peptide transpo 98.7 9.9E-09 3.4E-13 111.9 5.3 50 1039-1088 13-62 (271)
174 1oix_A RAS-related protein RAB 98.7 4.1E-09 1.4E-13 109.0 2.0 141 414-567 31-188 (191)
175 1kgd_A CASK, peripheral plasma 98.7 4.7E-09 1.6E-13 107.4 2.2 80 411-497 4-94 (180)
176 2ghi_A Transport protein; mult 98.7 1E-08 3.5E-13 111.1 4.4 49 1040-1088 15-63 (260)
177 3k1j_A LON protease, ATP-depen 98.6 1.8E-09 6.3E-14 131.8 -2.0 157 399-567 47-227 (604)
178 2ius_A DNA translocase FTSK; n 98.6 2.3E-09 7.9E-14 125.8 -2.4 160 404-582 159-343 (512)
179 2zr9_A Protein RECA, recombina 98.6 1.1E-07 3.7E-12 107.5 11.2 143 408-603 57-237 (349)
180 1qhl_A Protein (cell division 98.6 1.4E-09 4.9E-14 114.7 -4.8 75 383-468 9-91 (227)
181 1svm_A Large T antigen; AAA+ f 98.6 9.1E-10 3.1E-14 125.2 -6.9 134 400-551 157-312 (377)
182 2qt1_A Nicotinamide riboside k 98.6 1.1E-08 3.8E-13 107.1 1.2 104 408-551 17-120 (207)
183 3tau_A Guanylate kinase, GMP k 98.6 1.2E-08 4E-13 107.1 1.2 80 410-496 6-96 (208)
184 3tui_C Methionine import ATP-b 98.5 2.2E-08 7.7E-13 112.5 3.0 50 1039-1088 21-71 (366)
185 2r6a_A DNAB helicase, replicat 98.5 9.7E-08 3.3E-12 112.5 8.3 173 400-598 191-401 (454)
186 1vpl_A ABC transporter, ATP-bi 98.5 3.4E-08 1.2E-12 106.6 2.7 46 1040-1088 13-58 (256)
187 2ihy_A ABC transporter, ATP-bi 98.5 3.8E-08 1.3E-12 107.6 3.1 46 1040-1088 19-64 (279)
188 2olj_A Amino acid ABC transpor 98.5 3.7E-08 1.3E-12 106.6 2.7 44 1042-1088 24-67 (263)
189 2zu0_C Probable ATP-dependent 98.4 4.9E-08 1.7E-12 106.2 2.7 46 1040-1088 18-63 (267)
190 3kta_A Chromosome segregation 98.4 4.1E-08 1.4E-12 100.4 1.0 99 403-502 18-136 (182)
191 2f9l_A RAB11B, member RAS onco 98.4 1.4E-07 4.9E-12 97.9 4.3 136 414-567 7-164 (199)
192 1z47_A CYSA, putative ABC-tran 98.4 1.7E-07 5.8E-12 105.4 4.4 47 1040-1088 12-58 (355)
193 2ce7_A Cell division protein F 98.4 6.8E-07 2.3E-11 104.6 9.6 114 400-584 39-167 (476)
194 2j41_A Guanylate kinase; GMP, 98.3 1.1E-07 3.8E-12 99.2 2.1 83 407-496 1-94 (207)
195 3cr8_A Sulfate adenylyltranfer 98.3 5E-08 1.7E-12 116.4 -1.0 89 407-500 364-468 (552)
196 3t34_A Dynamin-related protein 98.3 3.3E-07 1.1E-11 104.6 5.7 47 399-448 24-72 (360)
197 2qtf_A Protein HFLX, GTP-bindi 98.3 2.4E-07 8.4E-12 105.2 4.2 142 414-568 181-351 (364)
198 2dhr_A FTSH; AAA+ protein, hex 98.3 3.4E-08 1.2E-12 116.4 -3.4 138 386-552 43-188 (499)
199 3nwj_A ATSK2; P loop, shikimat 98.2 9.7E-08 3.3E-12 102.5 -0.9 52 383-436 17-72 (250)
200 4eun_A Thermoresistant glucoki 98.2 3.6E-07 1.2E-11 95.0 2.4 62 406-472 23-84 (200)
201 2bbs_A Cystic fibrosis transme 98.2 3.6E-07 1.2E-11 100.3 2.1 44 1040-1088 38-81 (290)
202 3uie_A Adenylyl-sulfate kinase 98.2 7.5E-08 2.6E-12 100.2 -3.3 52 399-451 12-65 (200)
203 3vaa_A Shikimate kinase, SK; s 98.2 6.4E-07 2.2E-11 93.0 3.1 45 392-436 5-49 (199)
204 1zu4_A FTSY; GTPase, signal re 98.1 7.8E-07 2.7E-11 99.1 2.8 68 401-468 94-171 (320)
205 3ice_A Transcription terminati 98.0 6.6E-07 2.3E-11 99.6 0.3 56 380-437 130-199 (422)
206 3tqc_A Pantothenate kinase; bi 98.0 8.7E-08 3E-12 106.3 -6.9 125 399-555 73-211 (321)
207 2z43_A DNA repair and recombin 98.0 5E-06 1.7E-10 93.2 7.2 29 408-436 103-131 (324)
208 3hr8_A Protein RECA; alpha and 98.0 1.8E-05 6.1E-10 89.0 11.0 59 408-469 57-116 (356)
209 2vp4_A Deoxynucleoside kinase; 98.0 4.4E-07 1.5E-11 96.6 -2.1 64 406-473 14-87 (230)
210 1jjv_A Dephospho-COA kinase; P 98.0 2.1E-06 7.2E-11 89.5 2.4 69 523-594 60-131 (206)
211 2xau_A PRE-mRNA-splicing facto 97.9 1E-05 3.5E-10 101.1 8.5 65 521-585 189-256 (773)
212 2e87_A Hypothetical protein PH 97.9 1.1E-05 3.8E-10 91.7 7.9 59 521-580 230-289 (357)
213 2ffh_A Protein (FFH); SRP54, s 97.9 2.5E-05 8.7E-10 89.8 10.5 161 386-579 79-246 (425)
214 1uf9_A TT1252 protein; P-loop, 97.8 3E-07 1E-11 95.6 -7.0 33 412-449 8-40 (203)
215 2eyu_A Twitching motility prot 97.8 4.9E-06 1.7E-10 90.0 2.3 60 530-595 88-147 (261)
216 3m6a_A ATP-dependent protease 97.8 4.6E-06 1.6E-10 100.1 2.1 47 400-447 97-143 (543)
217 4a1f_A DNAB helicase, replicat 97.8 1E-05 3.6E-10 90.2 4.0 104 400-554 34-141 (338)
218 3nwj_A ATSK2; P loop, shikimat 97.7 2.9E-06 1E-10 90.9 -2.0 46 1041-1088 16-65 (250)
219 2gza_A Type IV secretion syste 97.7 1.3E-06 4.3E-11 99.5 -5.3 44 1044-1088 137-192 (361)
220 1htw_A HI0065; nucleotide-bind 97.6 1.7E-06 5.8E-11 85.9 -4.8 42 1044-1088 9-50 (158)
221 3ice_A Transcription terminati 97.6 6.1E-06 2.1E-10 91.9 -0.8 49 1038-1088 129-191 (422)
222 3kl4_A SRP54, signal recogniti 97.6 4.7E-05 1.6E-09 87.7 6.5 40 411-450 96-135 (433)
223 1knq_A Gluconate kinase; ALFA/ 97.6 1.9E-05 6.4E-10 79.9 2.7 38 410-451 6-43 (175)
224 1rz3_A Hypothetical protein rb 97.6 1.8E-05 6.1E-10 82.1 2.4 47 408-454 18-64 (201)
225 3aez_A Pantothenate kinase; tr 97.6 1.9E-06 6.4E-11 95.7 -5.7 45 1039-1088 40-107 (312)
226 1fnn_A CDC6P, cell division co 97.5 0.00022 7.5E-09 81.8 10.8 30 411-440 41-72 (389)
227 1v5w_A DMC1, meiotic recombina 97.4 0.0001 3.5E-09 83.1 6.1 28 408-435 118-145 (343)
228 3lxx_A GTPase IMAP family memb 97.4 0.00066 2.2E-08 72.2 11.7 29 414-442 31-59 (239)
229 2pt7_A CAG-ALFA; ATPase, prote 97.4 4.8E-06 1.6E-10 93.4 -5.4 38 1045-1088 151-188 (330)
230 2pez_A Bifunctional 3'-phospho 97.4 2.4E-05 8.3E-10 79.4 -0.2 40 410-450 3-44 (179)
231 1ypw_A Transitional endoplasmi 97.4 6.6E-05 2.2E-09 94.3 3.7 33 406-438 232-264 (806)
232 1sxj_C Activator 1 40 kDa subu 97.4 3.6E-05 1.2E-09 86.9 1.1 43 399-441 31-75 (340)
233 3b9p_A CG5977-PA, isoform A; A 97.4 0.00073 2.5E-08 74.4 11.5 32 524-555 97-128 (297)
234 2z4s_A Chromosomal replication 97.3 0.00029 9.8E-09 82.3 8.3 44 538-581 191-237 (440)
235 1lv7_A FTSH; alpha/beta domain 97.3 0.00086 2.9E-08 72.1 11.3 44 401-448 36-79 (257)
236 1sq5_A Pantothenate kinase; P- 97.3 8.3E-06 2.8E-10 90.7 -5.5 45 1039-1088 34-97 (308)
237 2dpy_A FLII, flagellum-specifi 97.3 2.7E-05 9.1E-10 90.5 -1.5 45 1041-1088 130-174 (438)
238 2qby_A CDC6 homolog 1, cell di 97.2 0.00014 4.7E-09 83.2 3.3 31 410-440 43-73 (386)
239 3bh0_A DNAB-like replicative h 97.2 0.00022 7.7E-09 79.3 4.9 107 400-553 56-164 (315)
240 2qor_A Guanylate kinase; phosp 97.2 0.0001 3.5E-09 76.5 1.9 30 408-437 8-37 (204)
241 1ega_A Protein (GTP-binding pr 97.2 0.00021 7.1E-09 79.0 4.2 126 411-569 7-143 (301)
242 4eaq_A DTMP kinase, thymidylat 97.1 0.00018 6.2E-09 76.1 3.5 43 402-445 13-58 (229)
243 2qag_B Septin-6, protein NEDD5 97.1 5.5E-05 1.9E-09 86.7 -0.6 43 1041-1088 15-59 (427)
244 1f6b_A SAR1; gtpases, N-termin 97.1 0.0001 3.6E-09 76.0 1.5 42 390-434 6-47 (198)
245 3r20_A Cytidylate kinase; stru 97.1 5.4E-05 1.9E-09 79.8 -0.9 71 411-481 8-96 (233)
246 1l8q_A Chromosomal replication 97.1 0.00065 2.2E-08 75.9 7.9 29 411-439 36-64 (324)
247 1mky_A Probable GTP-binding pr 97.1 0.00021 7.3E-09 83.5 3.9 59 414-472 182-252 (439)
248 2w58_A DNAI, primosome compone 97.1 0.00059 2E-08 70.4 6.8 27 413-439 55-81 (202)
249 1m7g_A Adenylylsulfate kinase; 97.1 9.7E-05 3.3E-09 77.2 0.3 42 407-448 20-63 (211)
250 2p67_A LAO/AO transport system 97.0 8.9E-05 3E-09 83.6 -0.3 48 400-447 44-91 (341)
251 3llm_A ATP-dependent RNA helic 97.0 0.00068 2.3E-08 72.0 6.5 131 409-575 73-212 (235)
252 2obl_A ESCN; ATPase, hydrolase 97.0 7.5E-05 2.6E-09 84.0 -1.5 45 1041-1088 44-88 (347)
253 1u94_A RECA protein, recombina 97.0 0.0032 1.1E-07 70.9 11.7 37 400-437 49-88 (356)
254 3bos_A Putative DNA replicatio 96.9 0.00049 1.7E-08 72.9 4.5 28 411-438 51-78 (242)
255 2npi_A Protein CLP1; CLP1-PCF1 96.9 2.9E-05 1E-09 90.6 -5.7 40 1040-1088 116-155 (460)
256 1kag_A SKI, shikimate kinase I 96.9 0.0004 1.4E-08 69.6 3.3 33 411-447 3-35 (173)
257 2www_A Methylmalonic aciduria 96.9 0.00025 8.7E-09 80.0 1.9 41 411-451 73-113 (349)
258 1m2o_B GTP-binding protein SAR 96.8 0.00055 1.9E-08 69.9 3.9 34 400-434 12-45 (190)
259 4dcu_A GTP-binding protein ENG 96.8 0.0011 3.9E-08 77.6 7.0 57 525-584 87-144 (456)
260 2jaq_A Deoxyguanosine kinase; 96.8 0.00012 4.1E-09 75.7 -1.5 69 414-482 2-86 (205)
261 3h4m_A Proteasome-activating n 96.8 0.0029 1E-07 69.0 9.5 28 409-436 48-75 (285)
262 4fcw_A Chaperone protein CLPB; 96.8 0.0015 5.1E-08 72.3 7.0 30 413-442 48-77 (311)
263 3cf0_A Transitional endoplasmi 96.7 0.0015 5.2E-08 72.1 6.6 39 407-447 44-82 (301)
264 2gj8_A MNME, tRNA modification 96.7 0.00083 2.9E-08 67.4 3.7 27 410-436 2-28 (172)
265 2qm8_A GTPase/ATPase; G protei 96.6 6.6E-05 2.3E-09 84.4 -5.5 44 1042-1088 29-72 (337)
266 1f2t_A RAD50 ABC-ATPase; DNA d 96.5 0.0014 4.6E-08 64.2 4.0 30 403-433 15-44 (149)
267 1sxj_D Activator 1 41 kDa subu 96.5 0.00052 1.8E-08 77.5 1.1 37 401-437 45-83 (353)
268 1njg_A DNA polymerase III subu 96.5 0.0013 4.6E-08 69.2 4.2 44 539-583 125-168 (250)
269 1y63_A LMAJ004144AAA protein; 96.5 0.0013 4.3E-08 66.9 3.4 32 404-435 2-33 (184)
270 2i1q_A DNA repair and recombin 96.4 0.0027 9.3E-08 70.8 6.2 28 408-435 94-121 (322)
271 2q6t_A DNAB replication FORK h 96.4 0.0033 1.1E-07 73.4 6.6 106 400-553 188-295 (444)
272 1j8m_F SRP54, signal recogniti 96.4 0.00063 2.2E-08 74.8 0.4 48 403-451 89-137 (297)
273 3lxw_A GTPase IMAP family memb 96.3 0.009 3.1E-07 63.7 9.3 58 525-583 87-151 (247)
274 1lw7_A Transcriptional regulat 96.3 9.2E-05 3.1E-09 84.4 -6.8 86 522-609 258-355 (365)
275 3n70_A Transport activator; si 96.3 0.0096 3.3E-07 57.7 8.6 30 410-439 22-51 (145)
276 1np6_A Molybdopterin-guanine d 96.3 0.0017 5.9E-08 65.2 3.2 38 412-449 6-46 (174)
277 1ex7_A Guanylate kinase; subst 96.3 0.002 6.8E-08 65.4 3.5 75 414-497 3-90 (186)
278 2p5t_B PEZT; postsegregational 96.3 0.0015 5E-08 70.2 2.6 42 408-451 28-69 (253)
279 2vhj_A Ntpase P4, P4; non- hyd 96.2 0.0077 2.6E-07 66.0 8.1 29 407-435 118-146 (331)
280 2ohf_A Protein OLA1, GTP-bindi 96.2 0.0021 7.1E-08 73.0 3.7 41 408-448 18-69 (396)
281 2yvu_A Probable adenylyl-sulfa 96.2 0.0014 4.7E-08 66.7 2.0 39 409-447 10-49 (186)
282 3t61_A Gluconokinase; PSI-biol 96.2 0.0017 5.7E-08 67.0 2.3 32 412-447 18-49 (202)
283 3d8b_A Fidgetin-like protein 1 96.2 0.0093 3.2E-07 67.4 8.6 27 410-436 115-141 (357)
284 2qag_A Septin-2, protein NEDD5 96.2 0.00051 1.8E-08 77.9 -1.8 58 381-447 15-72 (361)
285 2wji_A Ferrous iron transport 96.1 0.0037 1.3E-07 62.0 4.6 23 414-436 5-27 (165)
286 3dm5_A SRP54, signal recogniti 96.1 0.021 7.2E-07 65.7 11.4 29 411-439 99-127 (443)
287 3jvv_A Twitching mobility prot 96.1 0.0016 5.5E-08 73.3 1.8 42 1046-1088 92-140 (356)
288 3b9q_A Chloroplast SRP recepto 96.1 0.0015 5.1E-08 71.9 1.4 28 1061-1088 90-117 (302)
289 3uk6_A RUVB-like 2; hexameric 96.0 0.017 5.7E-07 65.5 10.1 40 410-449 68-107 (368)
290 3t15_A Ribulose bisphosphate c 96.0 0.012 4.2E-07 64.4 8.6 26 411-436 35-60 (293)
291 1tue_A Replication protein E1; 96.0 0.0074 2.5E-07 61.5 5.8 28 409-436 55-82 (212)
292 1tq4_A IIGP1, interferon-induc 95.9 0.00076 2.6E-08 77.3 -1.8 30 1059-1088 37-86 (413)
293 2qz4_A Paraplegin; AAA+, SPG7, 95.9 0.029 1E-06 60.0 10.9 26 411-436 38-63 (262)
294 2wjg_A FEOB, ferrous iron tran 95.9 0.0033 1.1E-07 63.6 3.2 22 414-435 9-30 (188)
295 2o8b_B DNA mismatch repair pro 95.9 0.0029 9.9E-08 80.8 2.9 47 1040-1088 748-806 (1022)
296 1xp8_A RECA protein, recombina 95.8 0.03 1E-06 63.1 10.5 29 408-436 70-98 (366)
297 2zej_A Dardarin, leucine-rich 95.7 0.0049 1.7E-07 62.3 3.3 26 414-439 4-29 (184)
298 2yhs_A FTSY, cell division pro 95.7 0.0026 8.8E-08 73.9 1.3 27 1062-1088 284-310 (503)
299 2orw_A Thymidine kinase; TMTK, 95.7 0.0098 3.3E-07 60.3 5.3 25 411-435 2-27 (184)
300 3syl_A Protein CBBX; photosynt 95.6 0.061 2.1E-06 59.1 12.2 27 411-437 66-92 (309)
301 2b8t_A Thymidine kinase; deoxy 95.6 0.013 4.4E-07 61.2 6.1 51 540-594 89-150 (223)
302 3qks_A DNA double-strand break 95.6 0.007 2.4E-07 62.5 4.0 29 404-433 16-44 (203)
303 2v1u_A Cell division control p 95.6 0.018 6.3E-07 65.3 8.0 29 410-438 42-70 (387)
304 1qhx_A CPT, protein (chloramph 95.6 0.0066 2.2E-07 60.9 3.7 27 411-437 2-28 (178)
305 1xwi_A SKD1 protein; VPS4B, AA 95.6 0.055 1.9E-06 60.1 11.5 27 410-436 43-69 (322)
306 3ihw_A Centg3; RAS, centaurin, 95.6 0.0093 3.2E-07 60.3 4.8 34 414-447 22-64 (184)
307 2og2_A Putative signal recogni 95.5 0.0031 1.1E-07 70.8 1.3 27 1062-1088 148-174 (359)
308 2ga8_A Hypothetical 39.9 kDa p 95.5 0.0021 7.2E-08 71.4 -0.2 38 400-437 10-49 (359)
309 2if2_A Dephospho-COA kinase; a 95.5 0.0068 2.3E-07 62.4 3.4 21 414-434 3-23 (204)
310 4ag6_A VIRB4 ATPase, type IV s 95.4 0.006 2.1E-07 70.0 3.1 36 411-446 34-69 (392)
311 1svm_A Large T antigen; AAA+ f 95.4 0.0023 7.9E-08 72.5 -0.5 30 1059-1088 157-186 (377)
312 1gvn_B Zeta; postsegregational 95.4 0.0081 2.8E-07 65.6 3.9 35 411-447 32-66 (287)
313 4aby_A DNA repair protein RECN 95.4 0.0027 9.3E-08 73.5 0.1 29 1059-1088 49-77 (415)
314 1ypw_A Transitional endoplasmi 95.4 0.0038 1.3E-07 78.3 1.4 34 404-437 503-536 (806)
315 2ewv_A Twitching motility prot 95.4 0.005 1.7E-07 69.9 2.2 58 530-593 199-256 (372)
316 2chg_A Replication factor C sm 95.4 0.045 1.5E-06 56.4 9.4 23 414-436 40-62 (226)
317 1ko7_A HPR kinase/phosphatase; 95.3 0.0085 2.9E-07 65.6 3.8 34 400-434 133-166 (314)
318 3cm0_A Adenylate kinase; ATP-b 95.3 0.0052 1.8E-07 62.2 2.0 27 410-436 2-28 (186)
319 1gtv_A TMK, thymidylate kinase 95.3 0.0027 9.4E-08 65.9 -0.1 89 414-521 2-97 (214)
320 3kb2_A SPBC2 prophage-derived 95.2 0.0076 2.6E-07 60.0 2.8 25 413-437 2-26 (173)
321 3co5_A Putative two-component 95.1 0.035 1.2E-06 53.5 7.2 28 410-437 25-52 (143)
322 2v54_A DTMP kinase, thymidylat 95.1 0.012 3.9E-07 60.5 3.9 27 410-436 2-28 (204)
323 1fzq_A ADP-ribosylation factor 95.1 0.0093 3.2E-07 60.1 3.0 23 413-435 17-39 (181)
324 1jal_A YCHF protein; nucleotid 95.1 0.016 5.5E-07 65.0 5.1 36 412-447 2-48 (363)
325 1ewq_A DNA mismatch repair pro 95.1 0.0085 2.9E-07 74.1 3.1 43 1040-1087 548-592 (765)
326 2qp9_X Vacuolar protein sortin 95.1 0.041 1.4E-06 62.0 8.6 27 410-436 82-108 (355)
327 3bgw_A DNAB-like replicative h 95.0 0.013 4.6E-07 68.0 4.5 34 401-434 186-219 (444)
328 1kht_A Adenylate kinase; phosp 95.0 0.012 4.1E-07 59.6 3.6 27 411-437 2-28 (192)
329 1xjc_A MOBB protein homolog; s 95.0 0.0096 3.3E-07 59.2 2.7 26 413-438 5-30 (169)
330 3zvl_A Bifunctional polynucleo 95.0 0.082 2.8E-06 60.9 10.9 35 409-447 255-289 (416)
331 2r62_A Cell division protease 95.0 0.0078 2.7E-07 64.9 2.1 32 403-436 37-68 (268)
332 3trf_A Shikimate kinase, SK; a 94.9 0.013 4.3E-07 59.3 3.4 26 411-436 4-29 (185)
333 2rhm_A Putative kinase; P-loop 94.8 0.012 4E-07 59.8 2.9 27 410-436 3-29 (193)
334 1p9r_A General secretion pathw 94.8 0.0015 5E-08 75.2 -4.4 41 1043-1088 144-184 (418)
335 3iij_A Coilin-interacting nucl 94.8 0.011 3.6E-07 59.6 2.4 27 410-436 9-35 (180)
336 3thx_A DNA mismatch repair pro 94.8 0.012 4.1E-07 74.3 3.3 49 1040-1088 629-679 (934)
337 3lw7_A Adenylate kinase relate 94.7 0.014 4.8E-07 58.0 3.2 20 413-432 2-21 (179)
338 1q3t_A Cytidylate kinase; nucl 94.7 0.016 5.5E-07 61.2 3.6 27 410-436 14-40 (236)
339 2c95_A Adenylate kinase 1; tra 94.6 0.014 4.7E-07 59.4 2.8 27 410-436 7-33 (196)
340 2qby_B CDC6 homolog 3, cell di 94.6 0.013 4.5E-07 66.7 2.9 26 411-436 44-69 (384)
341 2oap_1 GSPE-2, type II secreti 94.6 0.0035 1.2E-07 74.1 -2.0 30 1059-1088 248-277 (511)
342 1nn5_A Similar to deoxythymidy 94.5 0.018 6.2E-07 59.6 3.6 29 409-437 6-34 (215)
343 3cmw_A Protein RECA, recombina 94.5 0.16 5.5E-06 67.5 13.1 39 409-447 729-768 (1706)
344 2wwf_A Thymidilate kinase, put 94.5 0.019 6.4E-07 59.3 3.6 27 410-436 8-34 (212)
345 2plr_A DTMP kinase, probable t 94.5 0.015 5.3E-07 59.9 2.8 28 411-438 3-30 (213)
346 2zan_A Vacuolar protein sortin 94.4 0.12 4.1E-06 60.1 10.4 27 410-436 165-191 (444)
347 1vht_A Dephospho-COA kinase; s 94.4 0.019 6.4E-07 59.8 3.2 24 411-434 3-26 (218)
348 1jr3_A DNA polymerase III subu 94.3 0.085 2.9E-06 59.5 8.9 26 414-439 40-65 (373)
349 2bwj_A Adenylate kinase 5; pho 94.3 0.0079 2.7E-07 61.5 0.1 29 408-436 8-36 (199)
350 3hu3_A Transitional endoplasmi 94.3 0.12 4E-06 60.8 10.1 28 409-436 235-262 (489)
351 2r8r_A Sensor protein; KDPD, P 94.3 0.034 1.2E-06 57.7 4.8 43 537-579 81-125 (228)
352 2dby_A GTP-binding protein; GD 94.2 0.023 7.9E-07 64.1 3.6 59 414-503 3-61 (368)
353 2lkc_A Translation initiation 94.2 0.049 1.7E-06 54.0 5.7 25 411-435 7-31 (178)
354 4b4t_L 26S protease subunit RP 94.2 0.22 7.4E-06 57.2 11.7 30 408-437 211-240 (437)
355 2ze6_A Isopentenyl transferase 94.1 0.02 6.7E-07 61.3 2.8 23 414-436 3-25 (253)
356 1via_A Shikimate kinase; struc 94.1 0.018 6.1E-07 57.7 2.3 23 414-436 6-28 (175)
357 3thx_B DNA mismatch repair pro 94.1 0.0093 3.2E-07 75.0 0.1 46 1040-1087 638-689 (918)
358 2vli_A Antibiotic resistance p 94.1 0.018 6.3E-07 57.8 2.3 27 410-436 3-29 (183)
359 3io5_A Recombination and repai 94.1 0.099 3.4E-06 57.0 8.1 24 409-433 26-49 (333)
360 1ly1_A Polynucleotide kinase; 94.1 0.024 8.3E-07 56.7 3.2 31 413-446 3-33 (181)
361 2erx_A GTP-binding protein DI- 94.1 0.042 1.4E-06 54.0 4.9 21 414-434 5-25 (172)
362 3cbq_A GTP-binding protein REM 94.0 0.022 7.6E-07 58.1 2.8 22 414-435 25-46 (195)
363 3u61_B DNA polymerase accessor 93.9 0.08 2.7E-06 58.6 7.5 44 540-583 105-148 (324)
364 1hqc_A RUVB; extended AAA-ATPa 93.9 0.16 5.5E-06 56.0 9.9 26 411-436 37-62 (324)
365 3eie_A Vacuolar protein sortin 93.9 0.076 2.6E-06 58.9 7.1 27 410-436 49-75 (322)
366 1ltq_A Polynucleotide kinase; 93.9 0.17 5.8E-06 55.3 9.9 31 413-446 3-33 (301)
367 1zd8_A GTP:AMP phosphotransfer 93.8 0.028 9.5E-07 58.9 3.2 27 410-436 5-31 (227)
368 1aky_A Adenylate kinase; ATP:A 93.8 0.028 9.5E-07 58.6 3.2 27 410-436 2-28 (220)
369 2ew1_A RAS-related protein RAB 93.7 0.048 1.6E-06 55.9 4.8 22 414-435 28-49 (201)
370 2x8a_A Nuclear valosin-contain 93.7 0.011 3.7E-07 64.2 -0.2 28 1059-1088 34-61 (274)
371 1z2a_A RAS-related protein RAB 93.7 0.031 1E-06 54.8 3.1 22 414-435 7-28 (168)
372 3pfi_A Holliday junction ATP-d 93.7 0.2 7E-06 55.6 10.3 25 413-437 56-80 (338)
373 3a8t_A Adenylate isopentenyltr 93.7 0.033 1.1E-06 61.5 3.6 28 410-437 38-65 (339)
374 1tev_A UMP-CMP kinase; ploop, 93.7 0.03 1E-06 56.8 3.1 26 411-436 2-27 (196)
375 2cdn_A Adenylate kinase; phosp 93.7 0.029 9.9E-07 57.5 3.0 26 411-436 19-44 (201)
376 1nks_A Adenylate kinase; therm 93.7 0.03 1E-06 56.6 3.1 24 414-437 3-26 (194)
377 2kjq_A DNAA-related protein; s 93.7 0.025 8.6E-07 55.1 2.4 24 1060-1088 30-53 (149)
378 3iby_A Ferrous iron transport 93.7 0.029 9.8E-07 60.1 3.0 23 414-436 3-25 (256)
379 1z0j_A RAB-22, RAS-related pro 93.6 0.045 1.6E-06 53.7 4.2 23 414-436 8-30 (170)
380 1zu4_A FTSY; GTPase, signal re 93.6 0.016 5.5E-07 64.2 0.9 30 1060-1089 94-123 (320)
381 3q72_A GTP-binding protein RAD 93.6 0.03 1E-06 54.9 2.8 23 414-436 4-26 (166)
382 1ukz_A Uridylate kinase; trans 93.6 0.03 1E-06 57.4 2.8 26 411-436 14-39 (203)
383 1zak_A Adenylate kinase; ATP:A 93.6 0.027 9.2E-07 58.8 2.5 27 411-437 4-30 (222)
384 1kao_A RAP2A; GTP-binding prot 93.6 0.035 1.2E-06 54.2 3.2 22 414-435 5-26 (167)
385 1wb9_A DNA mismatch repair pro 93.5 0.021 7.1E-07 71.1 1.8 46 1040-1088 575-624 (800)
386 2nzj_A GTP-binding protein REM 93.5 0.037 1.3E-06 54.7 3.3 23 414-436 6-28 (175)
387 2ged_A SR-beta, signal recogni 93.5 0.035 1.2E-06 56.1 3.2 25 412-436 48-72 (193)
388 2dyk_A GTP-binding protein; GT 93.4 0.037 1.3E-06 53.8 3.2 23 414-436 3-25 (161)
389 3pxi_A Negative regulator of g 93.4 0.13 4.4E-06 64.3 8.8 23 414-436 523-545 (758)
390 3auy_A DNA double-strand break 93.4 0.036 1.2E-06 62.9 3.4 30 403-433 17-46 (371)
391 3q85_A GTP-binding protein REM 93.4 0.039 1.3E-06 54.2 3.3 23 414-436 4-26 (169)
392 2oil_A CATX-8, RAS-related pro 93.4 0.048 1.6E-06 55.2 4.0 22 414-435 27-48 (193)
393 2ce2_X GTPase HRAS; signaling 93.4 0.036 1.2E-06 54.0 3.0 22 414-435 5-26 (166)
394 3k53_A Ferrous iron transport 93.4 0.035 1.2E-06 59.9 3.1 23 414-436 5-27 (271)
395 4b4t_K 26S protease regulatory 93.4 0.26 9.1E-06 56.4 10.5 30 408-437 202-231 (428)
396 1u8z_A RAS-related protein RAL 93.4 0.038 1.3E-06 54.0 3.1 22 414-435 6-27 (168)
397 3fb4_A Adenylate kinase; psych 93.4 0.031 1.1E-06 57.9 2.5 23 414-436 2-24 (216)
398 1ixz_A ATP-dependent metallopr 93.4 0.013 4.5E-07 62.6 -0.3 41 1043-1088 26-66 (254)
399 1g16_A RAS-related protein SEC 93.3 0.036 1.2E-06 54.4 3.0 22 414-435 5-26 (170)
400 3dl0_A Adenylate kinase; phosp 93.3 0.036 1.2E-06 57.5 3.0 23 414-436 2-24 (216)
401 1c1y_A RAS-related protein RAP 93.3 0.04 1.4E-06 54.0 3.1 22 414-435 5-26 (167)
402 1z08_A RAS-related protein RAB 93.3 0.04 1.4E-06 54.2 3.2 22 414-435 8-29 (170)
403 2z0h_A DTMP kinase, thymidylat 93.3 0.04 1.4E-06 56.0 3.3 24 414-437 2-25 (197)
404 1rj9_A FTSY, signal recognitio 93.3 0.024 8E-07 62.4 1.5 19 1070-1088 101-119 (304)
405 3t5d_A Septin-7; GTP-binding p 93.3 0.035 1.2E-06 60.1 2.9 22 414-435 10-31 (274)
406 1ek0_A Protein (GTP-binding pr 93.3 0.04 1.4E-06 54.0 3.1 22 414-435 5-26 (170)
407 3vfd_A Spastin; ATPase, microt 93.3 0.26 8.7E-06 56.2 10.3 27 410-436 146-172 (389)
408 1wms_A RAB-9, RAB9, RAS-relate 93.2 0.041 1.4E-06 54.6 3.2 22 414-435 9-30 (177)
409 1ky3_A GTP-binding protein YPT 93.2 0.042 1.4E-06 54.7 3.2 23 414-436 10-32 (182)
410 2bcg_Y Protein YP2, GTP-bindin 93.2 0.066 2.3E-06 54.8 4.7 22 414-435 10-31 (206)
411 1iy2_A ATP-dependent metallopr 93.2 0.015 5E-07 63.2 -0.3 40 1044-1088 51-90 (278)
412 3cmu_A Protein RECA, recombina 93.2 0.095 3.2E-06 70.5 7.2 39 399-437 1066-1106(2050)
413 2fn4_A P23, RAS-related protei 93.1 0.041 1.4E-06 54.7 3.0 22 414-435 11-32 (181)
414 1ls1_A Signal recognition part 93.1 0.016 5.3E-07 63.6 -0.2 40 1043-1089 77-116 (295)
415 1svi_A GTP-binding protein YSX 93.1 0.04 1.4E-06 55.8 2.9 24 412-435 23-46 (195)
416 3tw8_B RAS-related protein RAB 93.1 0.043 1.5E-06 54.6 3.1 22 414-435 11-32 (181)
417 2iyv_A Shikimate kinase, SK; t 93.1 0.04 1.4E-06 55.4 2.9 24 413-436 3-26 (184)
418 1pzn_A RAD51, DNA repair and r 93.0 0.015 5.1E-07 65.4 -0.5 30 1060-1089 119-149 (349)
419 1e6c_A Shikimate kinase; phosp 93.0 0.046 1.6E-06 54.2 3.2 24 413-436 3-26 (173)
420 3ake_A Cytidylate kinase; CMP 93.0 0.037 1.3E-06 56.8 2.5 23 414-436 4-26 (208)
421 1r2q_A RAS-related protein RAB 93.0 0.046 1.6E-06 53.6 3.1 21 414-434 8-28 (170)
422 1a7j_A Phosphoribulokinase; tr 93.0 0.028 9.6E-07 61.4 1.6 26 411-436 4-29 (290)
423 3pqc_A Probable GTP-binding pr 93.0 0.043 1.5E-06 55.4 2.9 24 413-436 24-47 (195)
424 3tlx_A Adenylate kinase 2; str 93.0 0.038 1.3E-06 58.7 2.5 26 411-436 28-53 (243)
425 1qf9_A UMP/CMP kinase, protein 92.9 0.041 1.4E-06 55.6 2.6 25 412-436 6-30 (194)
426 2qmh_A HPR kinase/phosphorylas 92.9 0.066 2.2E-06 54.3 4.0 36 400-436 23-58 (205)
427 2grj_A Dephospho-COA kinase; T 92.9 0.051 1.7E-06 55.4 3.3 24 413-436 13-36 (192)
428 1m7b_A RND3/RHOE small GTP-bin 92.9 0.061 2.1E-06 54.0 3.9 22 414-435 9-30 (184)
429 3clv_A RAB5 protein, putative; 92.9 0.049 1.7E-06 55.2 3.2 22 414-435 9-30 (208)
430 4dsu_A GTPase KRAS, isoform 2B 92.9 0.05 1.7E-06 54.5 3.2 22 414-435 6-27 (189)
431 1zuh_A Shikimate kinase; alpha 92.9 0.055 1.9E-06 53.5 3.5 25 412-436 7-31 (168)
432 3t1o_A Gliding protein MGLA; G 92.9 0.051 1.7E-06 54.9 3.3 25 414-438 16-40 (198)
433 3b1v_A Ferrous iron uptake tra 92.9 0.05 1.7E-06 58.7 3.3 23 414-436 5-27 (272)
434 4b4t_M 26S protease regulatory 92.8 0.34 1.2E-05 55.6 10.4 31 407-437 210-240 (434)
435 3exa_A TRNA delta(2)-isopenten 92.8 0.053 1.8E-06 59.1 3.4 25 412-436 3-27 (322)
436 2pt5_A Shikimate kinase, SK; a 92.8 0.054 1.8E-06 53.5 3.3 23 414-436 2-24 (168)
437 1r8s_A ADP-ribosylation factor 92.8 0.053 1.8E-06 53.0 3.1 21 414-434 2-22 (164)
438 4b4t_J 26S protease regulatory 92.8 0.33 1.1E-05 54.9 10.0 29 409-437 179-207 (405)
439 2hxs_A RAB-26, RAS-related pro 92.8 0.057 2E-06 53.5 3.4 22 414-435 8-29 (178)
440 2pbr_A DTMP kinase, thymidylat 92.8 0.054 1.8E-06 54.8 3.3 24 414-437 2-25 (195)
441 2cxx_A Probable GTP-binding pr 92.7 0.049 1.7E-06 54.7 2.9 22 414-435 3-24 (190)
442 3bc1_A RAS-related protein RAB 92.7 0.052 1.8E-06 54.6 3.1 22 414-435 13-34 (195)
443 2y8e_A RAB-protein 6, GH09086P 92.7 0.051 1.8E-06 53.8 3.0 22 414-435 16-37 (179)
444 3a4m_A L-seryl-tRNA(SEC) kinas 92.7 0.053 1.8E-06 58.1 3.2 27 410-436 2-28 (260)
445 1upt_A ARL1, ADP-ribosylation 92.7 0.055 1.9E-06 53.2 3.1 22 413-434 8-29 (171)
446 2g6b_A RAS-related protein RAB 92.6 0.056 1.9E-06 53.7 3.1 22 414-435 12-33 (180)
447 1uj2_A Uridine-cytidine kinase 92.6 0.052 1.8E-06 57.9 3.0 24 413-436 23-46 (252)
448 1udx_A The GTP-binding protein 92.6 0.024 8.1E-07 65.1 0.3 28 1061-1088 147-174 (416)
449 1wf3_A GTP-binding protein; GT 92.6 0.056 1.9E-06 59.3 3.3 22 414-435 9-30 (301)
450 3t5g_A GTP-binding protein RHE 92.6 0.078 2.7E-06 52.8 4.1 20 414-433 8-27 (181)
451 1t9h_A YLOQ, probable GTPase E 92.5 0.014 4.7E-07 64.1 -1.7 23 1066-1088 168-190 (307)
452 3e1s_A Exodeoxyribonuclease V, 92.5 0.052 1.8E-06 65.2 3.1 28 411-438 203-230 (574)
453 2efe_B Small GTP-binding prote 92.5 0.06 2.1E-06 53.5 3.2 22 414-435 14-35 (181)
454 3be4_A Adenylate kinase; malar 92.5 0.049 1.7E-06 56.6 2.5 26 411-436 4-29 (217)
455 1z0f_A RAB14, member RAS oncog 92.4 0.061 2.1E-06 53.3 3.1 22 414-435 17-38 (179)
456 3con_A GTPase NRAS; structural 92.4 0.06 2.1E-06 54.2 3.1 22 414-435 23-44 (190)
457 4bas_A ADP-ribosylation factor 92.4 0.077 2.6E-06 53.7 4.0 22 413-434 18-39 (199)
458 2xtp_A GTPase IMAP family memb 92.4 0.059 2E-06 57.6 3.2 22 414-435 24-45 (260)
459 4b4t_H 26S protease regulatory 92.4 0.31 1.1E-05 55.9 9.2 30 408-437 239-268 (467)
460 2rcn_A Probable GTPase ENGC; Y 92.3 0.02 6.8E-07 64.1 -0.7 26 1061-1087 206-231 (358)
461 3d3q_A TRNA delta(2)-isopenten 92.3 0.06 2E-06 59.6 3.1 25 413-437 8-32 (340)
462 2a9k_A RAS-related protein RAL 92.3 0.064 2.2E-06 53.6 3.1 22 414-435 20-41 (187)
463 3tmk_A Thymidylate kinase; pho 92.3 0.079 2.7E-06 55.0 3.8 29 410-438 3-31 (216)
464 2bme_A RAB4A, RAS-related prot 92.3 0.062 2.1E-06 53.8 3.0 22 414-435 12-33 (186)
465 3v9p_A DTMP kinase, thymidylat 92.3 0.064 2.2E-06 56.1 3.1 28 410-437 23-50 (227)
466 2gf9_A RAS-related protein RAB 92.3 0.066 2.3E-06 53.9 3.1 22 414-435 24-45 (189)
467 3iev_A GTP-binding protein ERA 92.2 0.065 2.2E-06 59.0 3.3 23 413-435 11-33 (308)
468 2fg5_A RAB-22B, RAS-related pr 92.2 0.065 2.2E-06 54.2 3.0 22 414-435 25-46 (192)
469 3kkq_A RAS-related protein M-R 92.2 0.068 2.3E-06 53.3 3.1 22 414-435 20-41 (183)
470 1sxj_B Activator 1 37 kDa subu 92.2 0.17 5.8E-06 55.6 6.7 22 415-436 45-66 (323)
471 2orv_A Thymidine kinase; TP4A 92.2 0.47 1.6E-05 49.2 9.4 51 539-594 89-150 (234)
472 1vg8_A RAS-related protein RAB 92.2 0.069 2.4E-06 54.5 3.2 23 414-436 10-32 (207)
473 2f6r_A COA synthase, bifunctio 92.1 0.063 2.1E-06 58.3 2.9 23 412-434 75-97 (281)
474 1z06_A RAS-related protein RAB 92.1 0.071 2.4E-06 53.7 3.2 22 414-435 22-43 (189)
475 1sky_E F1-ATPase, F1-ATP synth 92.1 0.04 1.4E-06 63.5 1.4 40 401-441 141-180 (473)
476 2bov_A RAla, RAS-related prote 92.1 0.07 2.4E-06 54.4 3.1 22 414-435 16-37 (206)
477 1moz_A ARL1, ADP-ribosylation 92.1 0.049 1.7E-06 54.4 1.9 23 412-434 18-40 (183)
478 1ksh_A ARF-like protein 2; sma 92.1 0.073 2.5E-06 53.3 3.2 25 411-435 17-41 (186)
479 3i8s_A Ferrous iron transport 92.0 0.07 2.4E-06 57.7 3.2 23 414-436 5-27 (274)
480 2gf0_A GTP-binding protein DI- 92.0 0.07 2.4E-06 54.0 3.0 21 414-434 10-30 (199)
481 2qu8_A Putative nucleolar GTP- 92.0 0.073 2.5E-06 55.6 3.2 23 413-435 30-52 (228)
482 1gwn_A RHO-related GTP-binding 92.0 0.11 3.6E-06 53.4 4.3 22 414-435 30-51 (205)
483 2cjw_A GTP-binding protein GEM 92.0 0.075 2.6E-06 53.9 3.1 22 414-435 8-29 (192)
484 1nrj_B SR-beta, signal recogni 91.9 0.074 2.5E-06 55.0 3.1 24 413-436 13-36 (218)
485 2il1_A RAB12; G-protein, GDP, 91.9 0.073 2.5E-06 53.9 3.0 22 414-435 28-49 (192)
486 4dhe_A Probable GTP-binding pr 91.9 0.044 1.5E-06 56.9 1.4 25 412-436 29-53 (223)
487 1zbd_A Rabphilin-3A; G protein 91.9 0.079 2.7E-06 54.0 3.3 22 414-435 10-31 (203)
488 3oes_A GTPase rhebl1; small GT 91.9 0.072 2.5E-06 54.3 3.0 23 413-435 25-47 (201)
489 3tqf_A HPR(Ser) kinase; transf 91.9 0.07 2.4E-06 52.6 2.7 33 401-434 6-38 (181)
490 3tqc_A Pantothenate kinase; bi 91.9 0.021 7.1E-07 63.1 -1.3 48 1041-1088 48-109 (321)
491 3bwd_D RAC-like GTP-binding pr 91.9 0.09 3.1E-06 52.3 3.6 24 412-435 8-31 (182)
492 3e70_C DPA, signal recognition 91.8 0.043 1.5E-06 60.9 1.2 22 1067-1088 125-146 (328)
493 3foz_A TRNA delta(2)-isopenten 91.8 0.078 2.7E-06 57.7 3.2 25 412-436 10-34 (316)
494 3tkl_A RAS-related protein RAB 91.8 0.098 3.3E-06 52.8 3.8 22 414-435 18-39 (196)
495 1mh1_A RAC1; GTP-binding, GTPa 91.8 0.08 2.7E-06 52.8 3.1 21 414-434 7-27 (186)
496 3dz8_A RAS-related protein RAB 91.8 0.076 2.6E-06 53.6 3.0 23 414-436 25-47 (191)
497 2a5j_A RAS-related protein RAB 91.8 0.081 2.8E-06 53.4 3.1 22 414-435 23-44 (191)
498 2fv8_A H6, RHO-related GTP-bin 91.8 0.041 1.4E-06 56.5 0.9 34 402-435 15-48 (207)
499 3def_A T7I23.11 protein; chlor 91.8 0.079 2.7E-06 56.8 3.2 22 414-435 38-59 (262)
500 3llu_A RAS-related GTP-binding 91.7 0.085 2.9E-06 53.6 3.2 25 414-438 22-46 (196)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=7.3e-151 Score=1484.68 Aligned_cols=1040 Identities=32% Similarity=0.575 Sum_probs=868.7
Q ss_pred ccCCchHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC-----------------CCchhhHHHH
Q 001371 40 KTESVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDN-----------------QNNSETVDKV 102 (1091)
Q Consensus 40 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~-----------------~~~~~~~~~~ 102 (1091)
..++++++++|+|.+++++.+++++++++++.|++.|++++++|+++|.+... .....+.+.+
T Consensus 56 ~~~~v~~~~Lfrya~~~d~~l~~~g~~~a~~~G~~~p~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (1321)
T 4f4c_A 56 VVNKVSIPQLYRYTTTLEKLLLFIGTLVAVITGAGLPLMSILQGKVSQAFINEQIVINNNGSTFLPTGQNYTKTDFEHDV 135 (1321)
T ss_dssp CSSCCCHHHHTTTCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTTSCBCSSTTCBCCHHHHHHHH
T ss_pred ccCCCCHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccchHHHHHHH
Confidence 33467899999999998888889999999999999999999999999875211 0112233455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhccCCccHHHHHHHhHHHHHHHHHHHHH
Q 001371 103 SKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKV 182 (1091)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~ 182 (1091)
..+++.+++++++.+++.|++.+++.++++|+..++|.++|+|++++|++|||++ ++|++++|+++|++.+++++...+
T Consensus 136 ~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~r~~~~lR~~~~~~ll~~~~~~fd~~-~~G~l~sr~~~D~~~i~~~~~~~l 214 (1321)
T 4f4c_A 136 MNVVWSYAAMTVGMWAAGQITVTCYLYVAEQMNNRLRREFVKSILRQEISWFDTN-HSGTLATKLFDNLERVKEGTGDKI 214 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHT-CCTTHHHHHHHHHHHHHHTSSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCC-ChHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677778888899999999999999999999999999999999999999999987 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccH
Q 001371 183 GKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGE 262 (1091)
Q Consensus 183 ~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e 262 (1091)
..++..+.+++++++++++++|.+++++++++|+++++..++.++.++..++.++..+++.+.++|.++||++||+|++|
T Consensus 215 ~~~~~~~~~~i~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e 294 (1321)
T 4f4c_A 215 GMAFQYLSQFITGFIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGL 294 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 263 KQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASP 342 (1091)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~t~g~l~~~~~~~~~~~~~l~~~~~ 342 (1091)
+.+.++|.+..++..+...+.....++..++..++..+++++++|+|++++..|.+++|.+++++.++.....|+..+.+
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~ 374 (1321)
T 4f4c_A 295 RYELERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGP 374 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988888899999999999999999999999999999999888888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCcCCCCCcccCCCCCcEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCC
Q 001371 343 CLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSG 422 (1091)
Q Consensus 343 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sG 422 (1091)
.+..++.+..+++|+.++++.+|+.+........+.+.+++|+|+||+|+||+++++++|+|+||+|++||++|||||||
T Consensus 375 ~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sG 454 (1321)
T 4f4c_A 375 QLAVLGTAQGAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSG 454 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSCCSSCSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSS
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccccccccccccCCCCCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCC
Confidence 99999999999999999999887765443333333445688999999999998777899999999999999999999999
Q ss_pred CcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhceeEEeccCccccccHHHHhccCCCCCCHHHHHHHHHHcccH
Q 001371 423 SGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAA 502 (1091)
Q Consensus 423 sGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~ 502 (1091)
||||||+++|+|+|+|++|+|.+||+|+++++.++||++||||||+||||++||||||+||+|+++++++++||+.|+++
T Consensus 455 sGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~ 534 (1321)
T 4f4c_A 455 CGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAE 534 (1321)
T ss_dssp SCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCH
T ss_pred CcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCch
Q 001371 503 KFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLS 582 (1091)
Q Consensus 503 ~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls 582 (1091)
+||++||+||||+|||+|.+||||||||||||||+|+||+||||||||||||+++|+.|+++|++++++||+|+||||++
T Consensus 535 ~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls 614 (1321)
T 4f4c_A 535 KFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLS 614 (1321)
T ss_dssp HHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTT
T ss_pred hHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCeEEEEeCCEEeeecChhHHhcCCCchhHHHHHHHhhccccccccccccccchhhhhhhcccccccccccccCCC
Q 001371 583 TVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISRGS 662 (1091)
Q Consensus 583 ~i~~aD~Iivl~~G~Ive~Gt~~eL~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 662 (1091)
++++||+|+||++|+|+|+|||+||+++ +|.|+++++.|...+..+.........+..........+.... ...+.+.
T Consensus 615 ~i~~aD~Iivl~~G~ive~Gth~eL~~~-~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 692 (1321)
T 4f4c_A 615 TIRNADLIISCKNGQVVEVGDHRALMAQ-QGLYYDLVTAQTFTDAVDSAAEGKFSRENSVARQTSEHEGLSR-QASEMDD 692 (1321)
T ss_dssp TTTTCSEEEEEETTEEEEEECHHHHHTT-TCHHHHHHHHHHHHHHHHHHHCC----------------------------
T ss_pred HHHhCCEEEEeeCCeeeccCCHHHHHHh-hhHHHHHHHhhhccccccccccccccccccccccccccccccc-ccccccc
Confidence 9999999999999999999999999998 9999999998864432211111000000000000000000000 0000000
Q ss_pred CCCCCCccccccccCCCCCCCccccCCCCCCC--------CCCCCccCCCchHHhHhhhCCChhHHHHHHHHHHHHhhhH
Q 001371 663 SIGNSSRHSISVSFGLPSGQFADTALGEPAGP--------SQPTEEVAPEVPTRRLAYLNKPEIPVILAGTIAAMANGVI 734 (1091)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 734 (1091)
.. ...+.....+. . ..+...+...... ....+........++.++...+.++.++++++++++.+..
T Consensus 693 ~~-~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~ 767 (1321)
T 4f4c_A 693 IM-NRVRSSTIGSI--T--NGPVIDEKEERIGKDALSRLKQELEENNAQKTNLFEILYHARPHALSLFIGMSTATIGGFI 767 (1321)
T ss_dssp ----------------------------CCCCCCHHHHHHHTTTTSCCCCCCHHHHHHHTGGGHHHHHHHHHHHHHGGGH
T ss_pred hh-hhhhccccccc--c--CCcchhHHHhhccchhHHHHHHHHHHcCCcceeHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 00000000000 0 0000000000000 0001112222334455566677788888888889999999
Q ss_pred HHHHHHHHHHHHHHhcCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccC
Q 001371 735 LPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDE 814 (1091)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~i~~~~~~~~~~~~~~~~s~~Lh~~~~~~vl~~p~sFFD~ 814 (1091)
+|.+++|++.|+..+..++........+|..+|++++++..++.+++.+++.+++.+++++||+++|++++++|++|||.
T Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~ 847 (1321)
T 4f4c_A 768 YPTYSVFFTSFMNVFAGNPADFLSQGHFWALMFLVLAAAQGICSFLMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDS 847 (1321)
T ss_dssp HHHHHHHHHHHHHHTSSCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSTTS
T ss_pred HHHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhcc
Confidence 99999999999988776544444456789999999999999999999999999999999999999999999999999997
Q ss_pred CCCChhhHHhHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 001371 815 PEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADA 894 (1091)
Q Consensus 815 ~~tp~GrilnRfs~D~~~id~~l~~~l~~~~~~~~~~~~~~i~~~~~~w~l~l~~i~~~pl~~~~~~~~~~~~~~~~~~~ 894 (1091)
+.||+|+|+|||++|++.+|..++..+..++..++.++++++++++.+|++++++++++|+++++.+++.+.....+...
T Consensus 848 ~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~ 927 (1321)
T 4f4c_A 848 PQNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFFYGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKS 927 (1321)
T ss_dssp GGGCHHHHHHHHHTHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTSCCSSCSTTT
T ss_pred CCCChHHHHhcchhhHHHHHHHHHHHHHHHHHHhhhHHHHeeeehHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67999999999999999999999999999999999999999999999999999999999998887777665544433333
Q ss_pred HHHHHHHHhHHHHHHccchHhhhccchHHHHHHHHHHhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcc
Q 001371 895 KMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVED 974 (1091)
Q Consensus 895 ~~~~~~~~~~~~e~l~gl~TIra~~~e~~f~~~~~~~l~~~~~~~~r~~~~~~~~~g~~~~~~~~~~a~~~~~g~~li~~ 974 (1091)
..........+.|++.|++|||+|++|++|.++|.+.++...+...+.....+..+++...+.+...++.+|+|..++..
T Consensus 928 ~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~ 1007 (1321)
T 4f4c_A 928 ASEFADSGKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLALIIT 1007 (1321)
T ss_dssp SSHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhc
Confidence 33444455678899999999999999999999999999999999999999999999999888888889999999999888
Q ss_pred CCcCHH--HHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCCcccccceeEEEeeeeeeC
Q 001371 975 GKATFS--DVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKY 1052 (1091)
Q Consensus 975 g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~i~~~i~~~~~~~~~~~~~~~~~~~~G~I~f~nVs~~Y 1052 (1091)
+..+.. .++.++.++.+....+.....+.++...+..++.+++++++.+++.+.... +...|+.+|.|+|+||+|+|
T Consensus 1008 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~-~~~~~~~~g~I~f~nVsf~Y 1086 (1321)
T 4f4c_A 1008 DPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGMLRKISKIDSLSL-AGEKKKLYGKVIFKNVRFAY 1086 (1321)
T ss_dssp SSCSSCHHHHHHHHHHHHTTTSSTTGGGGHHHHHHHHHHHHHHHHHHHHCCCSSCTTCC-CSBCCCCCCCEEEEEEEECC
T ss_pred CccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCCccC-CCCCCCCCCeEEEEEEEEeC
Confidence 776543 223333333332233444555667788889999999999988776654433 23356678999999999999
Q ss_pred CCCCCCccccccceeeeCCCEEEEEcCCCCCccccc
Q 001371 1053 PSRPDVQVFRDLNLKIRAGKVSAKLNFQFHSLKQLT 1088 (1091)
Q Consensus 1053 ~~rp~~~VLk~is~~I~~Ge~valVG~SG~~~~~~~ 1088 (1091)
|++|+.||||||||+|+|||+||||||||||||||.
T Consensus 1087 ~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~ 1122 (1321)
T 4f4c_A 1087 PERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVV 1122 (1321)
T ss_dssp TTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHH
T ss_pred CCCCCCccccceeEEECCCCEEEEECCCCChHHHHH
Confidence 999888899999999999999999999999999974
No 2
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1.2e-132 Score=1308.69 Aligned_cols=1027 Identities=38% Similarity=0.669 Sum_probs=859.6
Q ss_pred CchHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC-------Cc---------hhhHHHHHHHH
Q 001371 43 SVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQ-------NN---------SETVDKVSKVA 106 (1091)
Q Consensus 43 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~-------~~---------~~~~~~~~~~~ 106 (1091)
...++++++|.+++++.+++++++++++.+++.|+++++++.++|.+.... +. ......+..++
T Consensus 32 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (1284)
T 3g5u_A 32 AVSVLTMFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYA 111 (1284)
T ss_dssp -CTTHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhHHHHHHHH
Confidence 456888999988777777888999999999999999999999998763210 00 00112334456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHH
Q 001371 107 VKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFL 186 (1091)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~ 186 (1091)
+.+++++++..++.+++.+++.+.+.++..++|.++|+|++++|++||+++ ++|++++|+++|++.+++.+...+..++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~~-~~G~l~sr~~~D~~~i~~~~~~~~~~~~ 190 (1284)
T 3g5u_A 112 YYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVH-DVGELNTRLTDDVSKINEGIGDKIGMFF 190 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHSC-CSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccC-CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667778888889999999999999999999999999999999999999987 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHH
Q 001371 187 QLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAM 266 (1091)
Q Consensus 187 ~~~~~~i~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~ 266 (1091)
..++++++.+++++.++|.+++++++++|+++++..++.++.++..++.++..++..+.+.|+++|+++||+|++|+.+.
T Consensus 191 ~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~~~ 270 (1284)
T 3g5u_A 191 QAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKEL 270 (1284)
T ss_dssp HHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHhcchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 267 SNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSA 346 (1091)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~ 346 (1091)
++|.+..++..+...+.....++..++..++..+.+++++|+|++++..|.+++|.+++++.++.....++..+.+.+..
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (1284)
T 3g5u_A 271 ERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEA 350 (1284)
T ss_dssp HHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888888888888888999999999999999999999999998877777777888888888999
Q ss_pred HHHHHHHHHHHHHHhccCCCCCcCCCCCcccCCCCCcEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHH
Q 001371 347 FGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKS 426 (1091)
Q Consensus 347 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKS 426 (1091)
++.+..++.|++++++.+|+.+.....+..+++..+.|+|+||+|+|+++++.++|+|+||+|++||++|||||||||||
T Consensus 351 ~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKS 430 (1284)
T 3g5u_A 351 FANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKS 430 (1284)
T ss_dssp HHHHHHHHHHHHHTTSCCCCCSSCCSSCCCCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHH
T ss_pred HHHHHHHHHHHHHHHcCCCcCCcccccCCCCCCCCCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHH
Confidence 99999999999999988776543222222233456789999999999865556899999999999999999999999999
Q ss_pred HHHHHHhccCCCCCcEEEECCccccCCChHHHhhceeEEeccCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHh
Q 001371 427 TVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFID 506 (1091)
Q Consensus 427 TLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~ 506 (1091)
||+++|+|+|+|++|+|.+||+|+++++.+++|++||||||+|+||++||+|||.+|.++.++++++++++.|+++++++
T Consensus 431 Tl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~ 510 (1284)
T 3g5u_A 431 TTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIM 510 (1284)
T ss_dssp HHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999899999999999999999999
Q ss_pred hCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhc
Q 001371 507 KLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN 586 (1091)
Q Consensus 507 ~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~ 586 (1091)
++|+||||.+||+|.+||||||||||||||++++|+||||||||||||+++|+.+++++++..+++|+|+||||++++++
T Consensus 511 ~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~ 590 (1284)
T 3g5u_A 511 KLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRN 590 (1284)
T ss_dssp HSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTT
T ss_pred hccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999998899999999999999999
Q ss_pred cCeEEEEeCCEEeeecChhHHhcCCCchhHHHHHHHhhccccccccccccccchhhhhhhcccccccccccccCCCCCCC
Q 001371 587 ADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISRGSSIGN 666 (1091)
Q Consensus 587 aD~Iivl~~G~Ive~Gt~~eL~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (1091)
||+|+||++|+|+|+|+|+||+++ ++.|++++..|....+......... ........ . ..... .....
T Consensus 591 ~d~i~vl~~G~i~~~g~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~----~~~~~--~~~~~--- 658 (1284)
T 3g5u_A 591 ADVIAGFDGGVIVEQGNHDELMRE-KGIYFKLVMTQTAGNEIELGNEACK-SKDEIDNL-D----MSSKD--SGSSL--- 658 (1284)
T ss_dssp CSEEEECSSSCCCCEECHHHHHHT-TSHHHHHHHHTC-------------------------------------------
T ss_pred CCEEEEEECCEEEEECCHHHHHhC-CCHHHHHHHHhhhcccccccccccc-cccccccc-c----ccccc--ccccc---
Confidence 999999999999999999999998 8999999987654322111000000 00000000 0 00000 00000
Q ss_pred CCccccccccCCCCCCCccccCCCCCCCCCCCCccCCCchHHhHhhhCCChhHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 001371 667 SSRHSISVSFGLPSGQFADTALGEPAGPSQPTEEVAPEVPTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVI 746 (1091)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 746 (1091)
.......... ..+.... ......+..++.......++...+..+.|+.++++++++++.+...|.+.++++.++
T Consensus 659 ~~~~~~~~~~-----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 732 (1284)
T 3g5u_A 659 IRRRSTRKSI-----CGPHDQD-RKLSTKEALDEDVPPASFWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVV 732 (1284)
T ss_dssp -------------------------------CCCCCSCCCTTHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccc-----ccccccc-cccchhhhhhccccchHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000000 0000000 000000000111111222222222333455566777778888888888888888888
Q ss_pred HHhcCCc--hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHh
Q 001371 747 ETFFKPP--HELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGA 824 (1091)
Q Consensus 747 ~~~~~~~--~~~~~~~~~~~~~y~~l~~~~~i~~~~~~~~~~~~~~~~s~~Lh~~~~~~vl~~p~sFFD~~~tp~Griln 824 (1091)
..+.... ........+|..+|++++++..++.+++.+++.+.+.++++++|.++|++++++|++|||++.||+|+|+|
T Consensus 733 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~l~~ 812 (1284)
T 3g5u_A 733 GVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTT 812 (1284)
T ss_dssp HHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHSCSCCHHHHHH
T ss_pred HHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCCCHHHHHH
Confidence 7664432 22233456788999999999999999999999999999999999999999999999999988899999999
Q ss_pred HHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhH
Q 001371 825 RLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQV 904 (1091)
Q Consensus 825 Rfs~D~~~id~~l~~~l~~~~~~~~~~~~~~i~~~~~~w~l~l~~i~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 904 (1091)
||++|++.+|..++..+..+++.++.++++++++++.+|++++++++++|+++++.+++.++........+.........
T Consensus 813 rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 892 (1284)
T 3g5u_A 813 RLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKI 892 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988888877666666666677788
Q ss_pred HHHHHccchHhhhccchHHHHHHHHHHhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhccCCcCHHHHHH
Q 001371 905 ANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFK 984 (1091)
Q Consensus 905 ~~e~l~gl~TIra~~~e~~f~~~~~~~l~~~~~~~~r~~~~~~~~~g~~~~~~~~~~a~~~~~g~~li~~g~~~~~~~~~ 984 (1091)
+.|+++|++|||+|+.|++|.++|.+..+...+...+.....+..+++...+.+..+++.+|+|..++..|.++..+++.
T Consensus 893 ~~e~l~gi~ti~a~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~ 972 (1284)
T 3g5u_A 893 ATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLL 972 (1284)
T ss_dssp HHHHHTTCTTTTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHH
Confidence 99999999999999999999999999999998888888899999999999999999999999999999999999888888
Q ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCCcccccceeEEEeeeeeeCCCCCCCcccccc
Q 001371 985 VFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDL 1064 (1091)
Q Consensus 985 ~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~i~~~i~~~~~~~~~~~~~~~~~~~~G~I~f~nVs~~Y~~rp~~~VLk~i 1064 (1091)
++..+.+....+.....+.+....+..++.+++++++.+++.+.....+..+++.+|.|+|+||+|+||++++.+||+|+
T Consensus 973 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~v 1052 (1284)
T 3g5u_A 973 VFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGL 1052 (1284)
T ss_dssp HHHHHHHHHHHHHHHTSSSCCSTHHHHHHHHHHHHHHSCCSSSSCCSSCCCTTTTSCCEEEEEEEBCCSCGGGCCSBSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCcEEEEEEEEECCCCCCCeeecce
Confidence 88878777788888888899999999999999999987766544333333344568999999999999877766799999
Q ss_pred ceeeeCCCEEEEEcCCCCCccccc
Q 001371 1065 NLKIRAGKVSAKLNFQFHSLKQLT 1088 (1091)
Q Consensus 1065 s~~I~~Ge~valVG~SG~~~~~~~ 1088 (1091)
||+|+|||++|||||||||||||.
T Consensus 1053 sl~i~~Ge~v~ivG~sGsGKSTl~ 1076 (1284)
T 3g5u_A 1053 SLEVKKGQTLALVGSSGCGKSTVV 1076 (1284)
T ss_dssp CEEECSSSEEEEECSSSTTHHHHH
T ss_pred eEEEcCCCEEEEECCCCCCHHHHH
Confidence 999999999999999999999974
No 3
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1.3e-95 Score=960.39 Aligned_cols=578 Identities=34% Similarity=0.571 Sum_probs=496.3
Q ss_pred CchHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 43 SVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFL 122 (1091)
Q Consensus 43 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (1091)
...+++++.+.+++ +..++++++++++.+...|.++++++.+++.+..+. .........+++++++++++..++.++
T Consensus 737 ~~~~~~~~~~~~~~-~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~i~~~~ 813 (1321)
T 4f4c_A 737 KTNLFEILYHARPH-ALSLFIGMSTATIGGFIYPTYSVFFTSFMNVFAGNP--ADFLSQGHFWALMFLVLAAAQGICSFL 813 (1321)
T ss_dssp CCCHHHHHHHTGGG-HHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHTSSCS--STTTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--hhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777776665 445667788888888999999999999998765432 112233445666777888888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhcc-CCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 123 QVTCWMITGERQATRIRGLYLKTILRQDVAFFDNE-TNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFI 201 (1091)
Q Consensus 123 ~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~-~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~ 201 (1091)
+.++..+.+.++..++|.++|++++++|++|||.. +++|+++||+++|++.+++.+...+..++..++.+++.++++++
T Consensus 814 ~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~~~~~~~ 893 (1321)
T 4f4c_A 814 MTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFF 893 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSTTSGGGCHHHHHHHHHTHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhccCCCChHHHHhcchhhHHHHHHHHHHHHHHHHHHhhhHHHHeeeehH
Confidence 99999999999999999999999999999999852 37899999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Q 001371 202 KGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGV 281 (1091)
Q Consensus 202 ~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~ 281 (1091)
++|.+++++++++|++++...++.++..+...+.++..++....+.|+++|+++||+|++|+.+.++|.+..+...+...
T Consensus 894 ~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~ 973 (1321)
T 4f4c_A 894 YGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEAI 973 (1321)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988888777776666666666777888899999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 282 QEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQV--VNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFE 359 (1091)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~t~g~l--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~ 359 (1091)
+.....++...+...+..+..++++++|..++..+..+.+.+ +.++.+......++..+......+..+..+.+|+++
T Consensus 974 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~ 1053 (1321)
T 4f4c_A 974 KEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFG 1053 (1321)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCHHHHHHHHHHHHTTTSSTTGGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888877888888888999999988887665543 333333333334566666777888899999999999
Q ss_pred HhccCCCCCcCCCCCcccCCCCCcEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCC
Q 001371 360 TINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ 439 (1091)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~ 439 (1091)
+++.+++.+.... ....++..|.|+|+||+|+||++++.+||+|+||+|+|||++|||||||||||||+++|+|+|+|+
T Consensus 1054 ~l~~~~~~~~~~~-~~~~~~~~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~ 1132 (1321)
T 4f4c_A 1054 MLRKISKIDSLSL-AGEKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTL 1132 (1321)
T ss_dssp HHHCCCSSCTTCC-CSBCCCCCCCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCS
T ss_pred HhhCcccCCCccC-CCCCCCCCCeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCC
Confidence 9998877654332 223344568999999999999877778999999999999999999999999999999999999999
Q ss_pred CcEEEECCccccCCChHHHhhceeEEeccCccccccHHHHhccCC--CCCCHHHHHHHHHHcccHHHHhhCCCCcccccc
Q 001371 440 AGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGK--DDATTEEIRVATELANAAKFIDKLPQGIDTLVG 517 (1091)
Q Consensus 440 ~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~--~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vg 517 (1091)
+|+|.|||+|++++++++||++|+||||||+||+|||||||+||. ++++++++++||+.|++++||++||+||||+||
T Consensus 1133 ~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vg 1212 (1321)
T 4f4c_A 1133 GGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVG 1212 (1321)
T ss_dssp SSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEET
T ss_pred CCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEec
Confidence 999999999999999999999999999999999999999999994 568999999999999999999999999999999
Q ss_pred cCCCCCChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhccCeEEEEeCCE
Q 001371 518 EHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGK 597 (1091)
Q Consensus 518 e~G~~LSGGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~ 597 (1091)
|+|.+|||||||||||||||+|||+||||||||||||++||+.|+++|++.+++||+|+|||||+|+++||+|+|||+|+
T Consensus 1213 e~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~aD~I~Vld~G~ 1292 (1321)
T 4f4c_A 1213 DRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGT 1292 (1321)
T ss_dssp TTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTTCSEEEEESSSS
T ss_pred CCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeecChhHHhcCCCchhHHHHHHHhhc
Q 001371 598 IVEKGTHSKLVEDPEGAYSQLIRLQEAN 625 (1091)
Q Consensus 598 Ive~Gt~~eL~~~~~~~y~~l~~~~~~~ 625 (1091)
|+|+|||+||+++ +|.|++|++.|..+
T Consensus 1293 IvE~Gth~eLl~~-~g~y~~L~~~Q~~e 1319 (1321)
T 4f4c_A 1293 IIEKGTHTQLMSE-KGAYYKLTQKQMTE 1319 (1321)
T ss_dssp EEEEECHHHHHHC-C-------------
T ss_pred EEEECCHHHHHhC-CcHHHHHHHHHHhc
Confidence 9999999999998 89999999988643
No 4
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=3.5e-90 Score=841.47 Aligned_cols=571 Identities=25% Similarity=0.389 Sum_probs=513.0
Q ss_pred chHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 44 VPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQ 123 (1091)
Q Consensus 44 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (1091)
..++++++|.+++++ .+++++++.++.+++.+..|++++.++|......+. ..+..+.+.++++.++..++.++.
T Consensus 9 ~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 83 (587)
T 3qf4_A 9 GGSKTLARYLKPYWI-FAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGDF----SLVLKTGILMLIVALIGAVGGIGC 83 (587)
T ss_dssp CCCCCGGGGTGGGHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777777654 456677777888888899999999999986433221 223334445556666777888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001371 124 VTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKG 203 (1091)
Q Consensus 124 ~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 203 (1091)
.++..+.+.++..++|.++|+|++++|+.+|++. ++|++++|+++|++.+++++...+..++..++.+++++++++.++
T Consensus 84 ~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~-~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~ 162 (587)
T 3qf4_A 84 TVFASYASQNFGADLRRDLFRKVLSFSISNVNRF-HTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSIN 162 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHccC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999987 999999999999999999999988889989899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Q 001371 204 WLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQE 283 (1091)
Q Consensus 204 ~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 283 (1091)
|.+++++++++|+++++..++.++.++..++.++..+++.+.+.|.++|+++||+|++|+.+.++|.+..++..+...+.
T Consensus 163 ~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 242 (587)
T 3qf4_A 163 VKLSSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISA 242 (587)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 001371 284 GLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINR 363 (1091)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~ 363 (1091)
....+...++..++..+..++++++|++++..|.+++|.+++++.+......|+..+...+..++.+..+++|+.++++.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~ 322 (587)
T 3qf4_A 243 FSLIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNE 322 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 88877777777777888888889999999999999999999998888888888888888888999999999999999987
Q ss_pred CCCCCcCCCCCcccCCCCCcEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEE
Q 001371 364 KPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443 (1091)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I 443 (1091)
+++.++.. .....++.++.|+++||+|+|+++ ++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|
T Consensus 323 ~~~~~~~~-~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i 400 (587)
T 3qf4_A 323 KPAIEEAD-NALALPNVEGSVSFENVEFRYFEN-TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRV 400 (587)
T ss_dssp CCSCCCCT-TCBCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEE
T ss_pred CCccCCCC-CccccCCCCCcEEEEEEEEEcCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEE
Confidence 76543322 111222345789999999999743 4689999999999999999999999999999999999999999999
Q ss_pred EECCccccCCChHHHhhceeEEeccCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCC
Q 001371 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQL 523 (1091)
Q Consensus 444 ~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~L 523 (1091)
.+||+|+++++.+++|++|+||||+|++|++||+|||.+|.++.++++++++++.++++++++++|+|+||.+||+|.+|
T Consensus 401 ~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~L 480 (587)
T 3qf4_A 401 EVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNF 480 (587)
T ss_dssp EESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSS
T ss_pred EECCEEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCc
Confidence 99999999999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhccCeEEEEeCCEEeeecC
Q 001371 524 SGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGT 603 (1091)
Q Consensus 524 SGGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt 603 (1091)
|||||||++||||+++||+|||||||||+||+++|+.+++.|+++.+++|+|+||||+++++.||+|++|++|+|+|+|+
T Consensus 481 SgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~ 560 (587)
T 3qf4_A 481 SGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGT 560 (587)
T ss_dssp CHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEEEEEC
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred hhHHhcCCCchhHHHHHHHh
Q 001371 604 HSKLVEDPEGAYSQLIRLQE 623 (1091)
Q Consensus 604 ~~eL~~~~~~~y~~l~~~~~ 623 (1091)
|+||+++ ++.|+++++.|.
T Consensus 561 ~~el~~~-~~~~~~~~~~~~ 579 (587)
T 3qf4_A 561 HKELLEH-CKPYREIYESQF 579 (587)
T ss_dssp HHHHHHH-CHHHHHHHHHHC
T ss_pred HHHHHhC-CcHHHHHHHHHh
Confidence 9999987 899999998764
No 5
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=1.2e-89 Score=837.02 Aligned_cols=571 Identities=31% Similarity=0.422 Sum_probs=511.0
Q ss_pred HHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHH----HHHHHHHHHHHHHHHHHHH
Q 001371 46 FYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKV----SKVAVKFVYLGIGSGIASF 121 (1091)
Q Consensus 46 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 121 (1091)
++++++|.+++++ .+++++++.++.+++.+..|++++.++|.+....+... ...+ ..+++.++++.++..++.+
T Consensus 2 ~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (578)
T 4a82_A 2 IKRYLQFVKPYKY-RIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTT-DEKVHHLTIAIGIALFIFVIVRPPIEF 79 (578)
T ss_dssp HHHHHHHHGGGHH-HHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCH-HHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchh-hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788877655 45566777777788888899999999998754322100 1111 2333444555666778889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 122 LQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFI 201 (1091)
Q Consensus 122 ~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~ 201 (1091)
++.++..+.+.++..++|.++|+|++++|+.||++. ++|++++|+++|++.+++++...+..++..++.+++++++++.
T Consensus 80 ~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~-~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~ 158 (578)
T 4a82_A 80 IRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANN-QVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFF 158 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTS-CHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999987 9999999999999999999887777778888888889999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Q 001371 202 KGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGV 281 (1091)
Q Consensus 202 ~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~ 281 (1091)
++|.+++++++++|+++++..++.++.++..++.++..++..+.+.|.++|+++||+|++|+.+.++|++..++..+...
T Consensus 159 ~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~ 238 (578)
T 4a82_A 159 LDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRAL 238 (578)
T ss_dssp HCTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001371 282 QEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETI 361 (1091)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~ 361 (1091)
+.....+...++..++..+..++++++|++++..|.+++|.+++++.+......|+..+...+..++.+..+.+|+.+++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l 318 (578)
T 4a82_A 239 KHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLI 318 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888999999999999999999999888877778899999989999999999999999999
Q ss_pred ccCCCCCcCCCCCcccCCCCCcEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCc
Q 001371 362 NRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG 441 (1091)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G 441 (1091)
+.+++.+... ...+.+...+.|+++||+|+|+++ ++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|
T Consensus 319 ~~~~~~~~~~-~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G 396 (578)
T 4a82_A 319 DEDYDIKNGV-GAQPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSG 396 (578)
T ss_dssp TCCCSSCCCT-TCCCCCCCSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEE
T ss_pred cCCCcccCCC-CccccCCCCCeEEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCc
Confidence 8876643321 112223345789999999999753 46899999999999999999999999999999999999999999
Q ss_pred EEEECCccccCCChHHHhhceeEEeccCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCC
Q 001371 442 EVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGT 521 (1091)
Q Consensus 442 ~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~ 521 (1091)
+|.+||+|+++++.+++|++|+||||+|++|++||+|||.+|.++.++++++++++.++++++++++|+|+||.+||+|.
T Consensus 397 ~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~ 476 (578)
T 4a82_A 397 QILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGV 476 (578)
T ss_dssp EEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGT
T ss_pred EEEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCC
Confidence 99999999999999999999999999999999999999999999899999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhccCeEEEEeCCEEeee
Q 001371 522 QLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEK 601 (1091)
Q Consensus 522 ~LSGGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~ 601 (1091)
+||||||||++||||++++|+|||||||||+||+++++.+++.++++.+++|+|+||||+++++.||+|++|++|+|+|+
T Consensus 477 ~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~ 556 (578)
T 4a82_A 477 KLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVET 556 (578)
T ss_dssp TSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEE
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred cChhHHhcCCCchhHHHHHHH
Q 001371 602 GTHSKLVEDPEGAYSQLIRLQ 622 (1091)
Q Consensus 602 Gt~~eL~~~~~~~y~~l~~~~ 622 (1091)
|+|+||+++ ++.|+++++.|
T Consensus 557 g~~~el~~~-~~~~~~~~~~q 576 (578)
T 4a82_A 557 GTHRELIAK-QGAYEHLYSIQ 576 (578)
T ss_dssp ECHHHHHHT-TSHHHHHHTTT
T ss_pred CCHHHHHhC-CcHHHHHHHhh
Confidence 999999998 89999998654
No 6
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.2e-89 Score=839.34 Aligned_cols=570 Identities=29% Similarity=0.490 Sum_probs=516.1
Q ss_pred chHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 44 VPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQ 123 (1091)
Q Consensus 44 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (1091)
..++++++|++++++ .+++++++.++.+++.+..|++++.++|.+....+. ..+..+++.++++.++..++.+++
T Consensus 23 ~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 97 (598)
T 3qf4_B 23 ATLRRLLGYLRPHTF-TLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRF----DLLPRYMLILGTIYALTSLLFWLQ 97 (598)
T ss_dssp HHHHHHGGGTGGGHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCG----GGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888887654 456677778888888899999999999987543221 223344555666677788889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001371 124 VTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKG 203 (1091)
Q Consensus 124 ~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 203 (1091)
.++..+.+.++..++|.++|+|++++|+.||++. ++|++++|+++|++.+++.+...+..++..++.+++.+++++.++
T Consensus 98 ~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~-~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~ 176 (598)
T 3qf4_B 98 GKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDRT-PHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVN 176 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCTHHHHHS-CHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999987 999999999999999999999888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Q 001371 204 WLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQE 283 (1091)
Q Consensus 204 ~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 283 (1091)
|.+++++++++|+.+++..++.++.++..++.++..++..+.+.|.++|+++||+|++|+.+.++|.+..++..+...+.
T Consensus 177 ~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 256 (598)
T 3qf4_B 177 VILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKA 256 (598)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 001371 284 GLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINR 363 (1091)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~ 363 (1091)
....+....+..++..+..++++++|++++..|.+++|.+++++.+......|+..+...+..+..+..+++|+.++++.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~ 336 (598)
T 3qf4_B 257 QIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDL 336 (598)
T ss_dssp HHHTTTHHHHHHHHHHHHHHHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 88888888888888888888889999999999999999999888777767788888888899999999999999999987
Q ss_pred CCCCCcCCCCCcccCCCCCcEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEE
Q 001371 364 KPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443 (1091)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I 443 (1091)
+++.+... ....++..+.|+++||+|+|++ ++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|
T Consensus 337 ~~~~~~~~--~~~~~~~~~~i~~~~v~~~y~~--~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i 412 (598)
T 3qf4_B 337 EEEKDDPD--AVELREVRGEIEFKNVWFSYDK--KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQI 412 (598)
T ss_dssp CCCCCCSS--CCCCCSCCCCEEEEEEECCSSS--SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEE
T ss_pred CCCCCCCC--CCCCCCCCCeEEEEEEEEECCC--CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEE
Confidence 76543211 1222334578999999999974 4579999999999999999999999999999999999999999999
Q ss_pred EECCccccCCChHHHhhceeEEeccCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCC
Q 001371 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQL 523 (1091)
Q Consensus 444 ~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~L 523 (1091)
.+||+|+++++.+++|++|+||||+|++|++||+|||.+|+++.++++++++++.++++++++.+|+|+||.+||+|.+|
T Consensus 413 ~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~L 492 (598)
T 3qf4_B 413 LVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDL 492 (598)
T ss_dssp EETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTS
T ss_pred EECCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCC
Confidence 99999999999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhccCeEEEEeCCEEeeecC
Q 001371 524 SGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGT 603 (1091)
Q Consensus 524 SGGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt 603 (1091)
||||||||+||||++++|+|||||||||+||+++++.+++.|+++.+++|+|+||||+++++.||+|++|++|+|+|+|+
T Consensus 493 SgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~ 572 (598)
T 3qf4_B 493 SQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGK 572 (598)
T ss_dssp CHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEEECSC
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred hhHHhcCCCchhHHHHHHHhh
Q 001371 604 HSKLVEDPEGAYSQLIRLQEA 624 (1091)
Q Consensus 604 ~~eL~~~~~~~y~~l~~~~~~ 624 (1091)
|+||+++ +|.|+++++.|..
T Consensus 573 ~~~l~~~-~~~~~~~~~~~~~ 592 (598)
T 3qf4_B 573 HDELIQK-RGFYYELFTSQYG 592 (598)
T ss_dssp HHHHHHT-TCHHHHHHHHHHG
T ss_pred HHHHHhC-CCHHHHHHHHHhh
Confidence 9999998 8999999987754
No 7
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=1.5e-86 Score=811.07 Aligned_cols=568 Identities=31% Similarity=0.494 Sum_probs=509.0
Q ss_pred hHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 45 PFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQV 124 (1091)
Q Consensus 45 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (1091)
.+++++++.+++++ .+++++++.++.+++.+..|++++.++|.+....+. ..+...++.+++++++..++.++..
T Consensus 12 ~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (582)
T 3b5x_A 12 TFKRLWTYIRLYKA-GLVVSTIALVINAAADTYMISLLKPLLDEGFGNAES----NFLRILPFMILGLMFVRGLSGFASS 86 (582)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCch----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677777766544 345566777777888888999999999976532111 1122223334556667788888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001371 125 TCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGW 204 (1091)
Q Consensus 125 ~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 204 (1091)
++..+.+.++..++|.++|+|++++|+.+|++. ++|++++|+++|++.+++.+...+..++..++.+++.+++++.++|
T Consensus 87 ~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~-~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~ 165 (582)
T 3b5x_A 87 YCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQE-STGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSW 165 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 999999999999999999999999999999987 9999999999999999999998899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 205 LLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEG 284 (1091)
Q Consensus 205 ~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 284 (1091)
.+++++++++|+.+++..++.++.++..++.++..++..+.+.|.++|+++||+|++|+.+.++|.+..++..+...+..
T Consensus 166 ~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 245 (582)
T 3b5x_A 166 QLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLV 245 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888889999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 001371 285 LAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRK 364 (1091)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~ 364 (1091)
...+....+..++..+..++++++|++++..|.+++|.+++++.+......|+..+...+..++.+..+.+|+.++++.+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~ 325 (582)
T 3b5x_A 246 SAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLE 325 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 88888888888888888888899999999999999999999988888888899999999999999999999999999876
Q ss_pred CCCCcCCCCCcccCCCCCcEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEE
Q 001371 365 PEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL 444 (1091)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~ 444 (1091)
++.+.. ..+.++..+.|+++||+|+|+++ ++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.
T Consensus 326 ~~~~~~---~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~ 401 (582)
T 3b5x_A 326 TERDNG---KYEAERVNGEVDVKDVTFTYQGK-EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSIC 401 (582)
T ss_pred CcCCCC---CCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEE
Confidence 653221 11112234679999999999742 25799999999999999999999999999999999999999999999
Q ss_pred ECCccccCCChHHHhhceeEEeccCccccccHHHHhccCC-CCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCC
Q 001371 445 IDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGK-DDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQL 523 (1091)
Q Consensus 445 idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~-~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~L 523 (1091)
+||+|+++++.+++|++|+||||+|++|++||+|||.+|. ++.++++++++++.++++++++++|+|+||.+||+|.+|
T Consensus 402 ~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~L 481 (582)
T 3b5x_A 402 LDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSL 481 (582)
T ss_pred ECCEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcC
Confidence 9999999999999999999999999999999999999997 678899999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhccCeEEEEeCCEEeeecC
Q 001371 524 SGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGT 603 (1091)
Q Consensus 524 SGGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt 603 (1091)
|||||||++||||++++|+|||||||||+||+++++.+.+.|+++.+++|+|+||||+++++.||+|++|++|+|++.|+
T Consensus 482 SgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~ 561 (582)
T 3b5x_A 482 SGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGR 561 (582)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred hhHHhcCCCchhHHHHHHHh
Q 001371 604 HSKLVEDPEGAYSQLIRLQE 623 (1091)
Q Consensus 604 ~~eL~~~~~~~y~~l~~~~~ 623 (1091)
|+||+++ ++.|+++++.|.
T Consensus 562 ~~~l~~~-~~~~~~~~~~q~ 580 (582)
T 3b5x_A 562 HADLLAQ-DGAYAQLHRIQF 580 (582)
T ss_pred HHHHHhC-CcHHHHHHHHhh
Confidence 9999987 899999998764
No 8
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=9.3e-87 Score=815.09 Aligned_cols=575 Identities=37% Similarity=0.554 Sum_probs=493.3
Q ss_pred HHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 46 FYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVT 125 (1091)
Q Consensus 46 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (1091)
+++++++.+++++ .+++++++.++.+++.+..|++++.++|.+...... .....+..+++.++++.++..++.+++.+
T Consensus 7 ~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (595)
T 2yl4_A 7 ARKLLGLAYPERR-RLAAAVGFLTMSSVISMSAPFFLGKIIDVIYTNPTV-DYSDNLTRLCLGLSAVFLCGAAANAIRVY 84 (595)
T ss_dssp HHHHHHHHGGGHH-HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCTTS-CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777766544 345566667777777888899999999976432110 00011222333444555666778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCchhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001371 126 CWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWL 205 (1091)
Q Consensus 126 ~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 205 (1091)
+..+.+.++..++|.++|+|++++|+.||++. ++|++++|+++|++.+++.+...+..++..++.+++.+++++.++|.
T Consensus 85 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~-~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 163 (595)
T 2yl4_A 85 LMQTSGQRIVNRLRTSLFSSILRQEVAFFDKT-RTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPN 163 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHS-CHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 89999999999999999999999999999987 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 206 LTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGL 285 (1091)
Q Consensus 206 l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 285 (1091)
+++++++.+|+.+++..++.++.++..++.++..++..+.+.|.++|+++||+|++|+.+.++|.+..++..+...+...
T Consensus 164 l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 243 (595)
T 2yl4_A 164 LATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAF 243 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999889999999999999999999999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 001371 286 AAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKP 365 (1091)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 365 (1091)
..+....+..++..+..++++++|++++..|.+++|.+++++.+......|+..+...+..++.+..+.+|+.++++.++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~ 323 (595)
T 2yl4_A 244 ARAGFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREP 323 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 88888777777778888888999999999999999999998888888888999999999999999999999999998766
Q ss_pred CCCcCCCCCcccCCCCCc-EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEE
Q 001371 366 EIDAYDTKGKILDDIRGD-IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL 444 (1091)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~-I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~ 444 (1091)
+.+... ......+..+. |+++||+|+|+++++.++|+|+||+|++||++|||||||||||||+++|+|+++|++|+|.
T Consensus 324 ~~~~~~-~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~ 402 (595)
T 2yl4_A 324 KLPFNE-GVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTIS 402 (595)
T ss_dssp SSCSSC-SBCCCTTTCCCCEEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEE
T ss_pred ccCCCC-CCCCCcCCCCCeEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEE
Confidence 543211 11111223467 9999999999754345799999999999999999999999999999999999999999999
Q ss_pred ECCccccCCChHHHhhceeEEeccCccccccHHHHhccCCCC---CCHHHHHHHHHHcccHHHHhhCCCCcccccccCCC
Q 001371 445 IDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD---ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGT 521 (1091)
Q Consensus 445 idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~~---~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~ 521 (1091)
+||+|+++++.+++|++|+||||+|++|++||+|||.+|.+. .++++++++++.++++++++++|+|+||.+||+|.
T Consensus 403 ~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~ 482 (595)
T 2yl4_A 403 LDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGV 482 (595)
T ss_dssp ETTEETTTBCHHHHHHSEEEECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSC
T ss_pred ECCEEhhhCCHHHHHhceEEEccCCcccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCC
Confidence 999999999999999999999999999999999999999875 78999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhccCeEEEEeCCEEeee
Q 001371 522 QLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEK 601 (1091)
Q Consensus 522 ~LSGGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~ 601 (1091)
+||||||||++||||++++|+|||||||||+||+++++.+.+.|+++.+++|+|+||||+++++.||+|++|++|+|+|.
T Consensus 483 ~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~ 562 (595)
T 2yl4_A 483 LLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKITEY 562 (595)
T ss_dssp CCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHHHSSEEEEEETTEEEEE
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHcCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred cChhHHhcCCCchhHHHHHHHhh
Q 001371 602 GTHSKLVEDPEGAYSQLIRLQEA 624 (1091)
Q Consensus 602 Gt~~eL~~~~~~~y~~l~~~~~~ 624 (1091)
|+|+||++++++.|+++++.|..
T Consensus 563 g~~~~l~~~~~~~~~~~~~~q~~ 585 (595)
T 2yl4_A 563 GKHEELLSKPNGIYRKLMNKQSF 585 (595)
T ss_dssp ECSCC------C-----------
T ss_pred CCHHHHHhCCChHHHHHHHHhhc
Confidence 99999998547899999887643
No 9
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=1.9e-86 Score=810.17 Aligned_cols=567 Identities=32% Similarity=0.519 Sum_probs=508.0
Q ss_pred hHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 45 PFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQV 124 (1091)
Q Consensus 45 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (1091)
.+++++++.+++++ .+++++++.++.+++.+..|++++.++|.+....+ ...+...++.++++.++..++.+++.
T Consensus 12 ~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (582)
T 3b60_A 12 TFRRLWPTIAPFKA-GLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTD----RSVLLWMPLVVIGLMILRGITSYISS 86 (582)
T ss_dssp HHHHHHHHHGGGHH-HHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTT----HHHHHHSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc----hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777776644 34566677777788888899999999997643211 11222223334556667788888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001371 125 TCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGW 204 (1091)
Q Consensus 125 ~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 204 (1091)
+...+.+.++..++|.++|+|++++|+.+|++. ++|++++|+++|++.+++.+...+..++..++.+++.+++++.++|
T Consensus 87 ~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~-~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~ 165 (582)
T 3b60_A 87 YCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQ-STGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSW 165 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCSTHHHHS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 999999999999999999999999999999987 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 205 LLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEG 284 (1091)
Q Consensus 205 ~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 284 (1091)
.+++++++++|+++++..++.++.++..++.++..++..+.+.|.++|+++||+|++|+.+.++|.+..++..+...+..
T Consensus 166 ~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 245 (582)
T 3b60_A 166 QLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMV 245 (582)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988899999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 001371 285 LAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRK 364 (1091)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~ 364 (1091)
........+..++..+..++++++|++++..|.+++|.+++++.+......|+..+...+..+..+..+.+|+.++++.+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~ 325 (582)
T 3b60_A 246 SASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSE 325 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 88888888888888888888899999999999999999999988888888899999999999999999999999999876
Q ss_pred CCCCcCCCCCcccCCCCCcEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEE
Q 001371 365 PEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL 444 (1091)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~ 444 (1091)
++.+.. ..+.++..+.|+++||+|+|+++ ++++|+|+||+|++||++|||||||||||||+++|+|+++|++|+|.
T Consensus 326 ~~~~~~---~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~ 401 (582)
T 3b60_A 326 QEKDEG---KRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHIL 401 (582)
T ss_dssp CSCCCC---CBCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEE
T ss_pred CCccCC---CCCCCCCCCcEEEEEEEEEcCCC-CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEE
Confidence 653321 11112234679999999999742 25799999999999999999999999999999999999999999999
Q ss_pred ECCccccCCChHHHhhceeEEeccCccccccHHHHhccCC-CCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCC
Q 001371 445 IDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGK-DDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQL 523 (1091)
Q Consensus 445 idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~-~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~L 523 (1091)
+||+|+++++.+++|++|+||||+|++|++||+|||.+|. ++.++++++++++.++++++++++|+|+||.+||+|.+|
T Consensus 402 ~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~L 481 (582)
T 3b60_A 402 MDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLL 481 (582)
T ss_dssp ETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSS
T ss_pred ECCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCC
Confidence 9999999999999999999999999999999999999997 678899999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhccCeEEEEeCCEEeeecC
Q 001371 524 SGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGT 603 (1091)
Q Consensus 524 SGGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt 603 (1091)
|||||||++||||++++|+|||||||||+||+++++.+.+.|+++.+++|+|+||||+++++.||+|++|++|+|++.|+
T Consensus 482 SgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~ 561 (582)
T 3b60_A 482 SGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGT 561 (582)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEEC
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEecC
Confidence 99999999999999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred hhHHhcCCCchhHHHHHHH
Q 001371 604 HSKLVEDPEGAYSQLIRLQ 622 (1091)
Q Consensus 604 ~~eL~~~~~~~y~~l~~~~ 622 (1091)
|+||+++ ++.|+++++.|
T Consensus 562 ~~~l~~~-~~~~~~~~~~q 579 (582)
T 3b60_A 562 HSELLAQ-HGVYAQLHKMQ 579 (582)
T ss_dssp HHHHHHH-TSSHHHHHHHT
T ss_pred HHHHHHc-CCHHHHHHHHh
Confidence 9999987 78999999876
No 10
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1.2e-82 Score=835.27 Aligned_cols=581 Identities=38% Similarity=0.649 Sum_probs=512.4
Q ss_pred chHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 44 VPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQ 123 (1091)
Q Consensus 44 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (1091)
..+++++++.++++ ..+++++++.++.+++.|..+++++.+++.+...............+.+++++++++..++.+++
T Consensus 691 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~ 769 (1284)
T 3g5u_A 691 ASFWRILKLNSTEW-PYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQ 769 (1284)
T ss_dssp CCTTHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhcchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666665543 34567777888888899999999999998765432211222333445566777778888888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhc-cCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 124 VTCWMITGERQATRIRGLYLKTILRQDVAFFDN-ETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIK 202 (1091)
Q Consensus 124 ~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~-~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 202 (1091)
.++..+.+.++..++|.++|++++++|++||++ .+++|++++|+++|++.++..+...+..++..+..+++.+++++.+
T Consensus 770 ~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~i~~~~~ 849 (1284)
T 3g5u_A 770 GFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIY 849 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999995 2378999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Q 001371 203 GWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQ 282 (1091)
Q Consensus 203 ~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 282 (1091)
+|.+++++++++|+++++..+..++.++...+.++..++....+.|+++|+++||+|++|+.+.++|.+..+...+...+
T Consensus 850 ~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~~e~~~~~~~~~~~~~~~~~~~~ 929 (1284)
T 3g5u_A 850 GWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMK 929 (1284)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTTCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988888888888888888889999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001371 283 EGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETIN 362 (1091)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~ 362 (1091)
.....++..++...+..+.+++++|+|++++..+.++.+.++.++.+......++..+......+..+..++.|+.++++
T Consensus 930 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~ 1009 (1284)
T 3g5u_A 930 KAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIE 1009 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHHHHHTSSSCCSTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 88888888888888888899999999999999999999999887777666666777666666667788899999999998
Q ss_pred cCCCCCcCCCCCcccCCCCCcEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcE
Q 001371 363 RKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442 (1091)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~ 442 (1091)
.+|+.+........++...+.|+|+||+|+|+++++.++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+
T Consensus 1010 ~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~ 1089 (1284)
T 3g5u_A 1010 KTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGS 1089 (1284)
T ss_dssp SCCSSSSCCSSCCCTTTTSCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEE
T ss_pred CCCcccccccccccccCCCCcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCE
Confidence 87765432222222233467899999999998654568999999999999999999999999999999999999999999
Q ss_pred EEECCccccCCChHHHhhceeEEeccCccccccHHHHhccCCC--CCCHHHHHHHHHHcccHHHHhhCCCCcccccccCC
Q 001371 443 VLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHG 520 (1091)
Q Consensus 443 I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~--~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G 520 (1091)
|.+||+|+++++.+++|++|+||||||.+|++||+|||.+|.+ ..++++++++++.++++++++++|+||||.|||+|
T Consensus 1090 I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G 1169 (1284)
T 3g5u_A 1090 VFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKG 1169 (1284)
T ss_dssp EESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTS
T ss_pred EEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCC
Confidence 9999999999999999999999999999999999999999975 36899999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhccCeEEEEeCCEEee
Q 001371 521 TQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVE 600 (1091)
Q Consensus 521 ~~LSGGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive 600 (1091)
.+|||||||||||||||+++|+|||||||||+||+++++.|++.|++..+++|+|+||||+++++.||+|+||++|+|+|
T Consensus 1170 ~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~~dri~vl~~G~i~~ 1249 (1284)
T 3g5u_A 1170 TQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKE 1249 (1284)
T ss_dssp CSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGSCSEEEEEETBEEEE
T ss_pred CccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHcCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999999888999999999999999999999999999999
Q ss_pred ecChhHHhcCCCchhHHHHHHHhhcc
Q 001371 601 KGTHSKLVEDPEGAYSQLIRLQEANK 626 (1091)
Q Consensus 601 ~Gt~~eL~~~~~~~y~~l~~~~~~~~ 626 (1091)
.|+|+||+++ +|.|++|++.|....
T Consensus 1250 ~g~~~~l~~~-~g~y~~l~~~q~~~~ 1274 (1284)
T 3g5u_A 1250 HGTHQQLLAQ-KGIYFSMVSVQAGAK 1274 (1284)
T ss_dssp EECHHHHHHS-CSHHHHHHHHHC---
T ss_pred ECCHHHHHhC-CCHHHHHHHHHhhcc
Confidence 9999999998 899999999886443
No 11
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=4.9e-66 Score=572.30 Aligned_cols=277 Identities=42% Similarity=0.654 Sum_probs=251.7
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCcCCCCCcccCCCCCcEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCC
Q 001371 344 LSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGS 423 (1091)
Q Consensus 344 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGs 423 (1091)
...++.+.++++|++++++.+++..... .........+.|+|+||+|+|++ +.++|+||||+|++||++||||||||
T Consensus 15 ~~~~~~~~~~~~ri~~~l~~~~~~~~~~-~~~~~~~~~~~i~~~~vs~~y~~--~~~vL~~isl~i~~Ge~vaivG~sGs 91 (306)
T 3nh6_A 15 VPRGSHMFIDMENMFDLLKEETEVKDLP-GAGPLRFQKGRIEFENVHFSYAD--GRETLQDVSFTVMPGQTLALVGPSGA 91 (306)
T ss_dssp ----CCTTCCHHHHHHHHHHHHSCCCCT-TCBCCCCSSCCEEEEEEEEESST--TCEEEEEEEEEECTTCEEEEESSSCH
T ss_pred chhHHHHHHHHHHHHHHHhCCccccccc-cccccCCCCCeEEEEEEEEEcCC--CCceeeeeeEEEcCCCEEEEECCCCc
Confidence 4456667778899999988765543221 11112223568999999999974 35799999999999999999999999
Q ss_pred cHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhceeEEeccCccccccHHHHhccCCCCCCHHHHHHHHHHcccHH
Q 001371 424 GKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAK 503 (1091)
Q Consensus 424 GKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~ 503 (1091)
|||||+++|+|+|+|++|+|.+||+|+++++.+++|++|+||||+|++|++||+|||.||.+..++++++++++.+++++
T Consensus 92 GKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~ 171 (306)
T 3nh6_A 92 GKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHD 171 (306)
T ss_dssp HHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHH
T ss_pred hHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999998889999999999999999
Q ss_pred HHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchh
Q 001371 504 FIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLST 583 (1091)
Q Consensus 504 ~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~ 583 (1091)
++..+|+||+|.+|++|.+|||||||||+|||||+++|+|||||||||+||+.+++.|++.|+++.+++|+|+||||+++
T Consensus 172 ~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~ 251 (306)
T 3nh6_A 172 AIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLST 251 (306)
T ss_dssp HHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHH
T ss_pred HHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998889999999999999
Q ss_pred hhccCeEEEEeCCEEeeecChhHHhcCCCchhHHHHHHHhh
Q 001371 584 VRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEA 624 (1091)
Q Consensus 584 i~~aD~Iivl~~G~Ive~Gt~~eL~~~~~~~y~~l~~~~~~ 624 (1091)
+..||+|+||++|+|++.|+|+||+++ ++.|+++++.|..
T Consensus 252 ~~~aD~i~vl~~G~iv~~G~~~el~~~-~~~y~~l~~~q~~ 291 (306)
T 3nh6_A 252 VVNADQILVIKDGCIVERGRHEALLSR-GGVYADMWQLQQG 291 (306)
T ss_dssp HHTCSEEEEEETTEEEEEECHHHHHHH-TSHHHHHHHHHHC
T ss_pred HHcCCEEEEEECCEEEEECCHHHHHhc-ChHHHHHHHHHHh
Confidence 999999999999999999999999997 8999999988764
No 12
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=9.3e-55 Score=470.95 Aligned_cols=239 Identities=49% Similarity=0.799 Sum_probs=225.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhce
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~i 462 (1091)
+|+++|++|+|++. +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+++...+|++|
T Consensus 7 ~~~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i 85 (247)
T 2ff7_A 7 DITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 85 (247)
T ss_dssp EEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred ceeEEEEEEEeCCC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcE
Confidence 69999999999421 35799999999999999999999999999999999999999999999999999999888899999
Q ss_pred eEEeccCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCC
Q 001371 463 GLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR 542 (1091)
Q Consensus 463 a~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~ 542 (1091)
+||||+|.+|+.|++|||.++.+..+++++.++++.+++.+++.++|+|+++.+++++.+||||||||++|||||+++|+
T Consensus 86 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~ 165 (247)
T 2ff7_A 86 GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK 165 (247)
T ss_dssp EEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCS
T ss_pred EEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999876677888999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhccCeEEEEeCCEEeeecChhHHhcCCCchhHHHHHHH
Q 001371 543 ILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQ 622 (1091)
Q Consensus 543 IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~~~~~~~y~~l~~~~ 622 (1091)
|||||||||+||+.+++.+.+.|+++.+++|+|+|||+++.+..||+|++|++|+|++.|+++|+.+.+.+.|.+++..|
T Consensus 166 lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~l~~~~ 245 (247)
T 2ff7_A 166 ILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 245 (247)
T ss_dssp EEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHTSTTCHHHHHHHHH
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCchHHHHHHHhh
Confidence 99999999999999999999999988778999999999999988999999999999999999999876568888887654
No 13
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=4.9e-54 Score=468.95 Aligned_cols=240 Identities=48% Similarity=0.786 Sum_probs=224.6
Q ss_pred CcEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhc
Q 001371 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1091)
Q Consensus 382 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ 461 (1091)
+.|+++|++|+|++.+..++|+|+||+|++||++||+||||||||||+++|+|+++| +|+|.+||.++.+++...+|++
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 469999999999743225799999999999999999999999999999999999987 8999999999999888889999
Q ss_pred eeEEeccCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCC
Q 001371 462 IGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1091)
Q Consensus 462 ia~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~ 541 (1091)
|+||||+|.+|+.|++|||.++.+..+++++.++++.+++.+++..+|+|++|.+++++.+||||||||++|||||+++|
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p 174 (260)
T 2ghi_A 95 IGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDP 174 (260)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCC
T ss_pred EEEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999987656778899999999999999999999999999999999999999999999999999
Q ss_pred CEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhccCeEEEEeCCEEeeecChhHHhcCCCchhHHHHHH
Q 001371 542 RILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRL 621 (1091)
Q Consensus 542 ~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~~~~~~~y~~l~~~ 621 (1091)
+|||||||||+||+.+++.+.+.|+++.+++|+|+|||+++.+..||+|++|++|+|++.|+++++++. .+.|.+++..
T Consensus 175 ~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~~ 253 (260)
T 2ghi_A 175 KIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKL-NGEYAEMWNM 253 (260)
T ss_dssp SEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHHHH-TSHHHHHHHH
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHHhc-ChHHHHHHHh
Confidence 999999999999999999999999998778999999999999989999999999999999999999886 6888888876
Q ss_pred Hh
Q 001371 622 QE 623 (1091)
Q Consensus 622 ~~ 623 (1091)
+.
T Consensus 254 ~~ 255 (260)
T 2ghi_A 254 QS 255 (260)
T ss_dssp HH
T ss_pred hh
Confidence 64
No 14
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=5.2e-53 Score=463.32 Aligned_cols=240 Identities=42% Similarity=0.721 Sum_probs=221.4
Q ss_pred CcEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhc
Q 001371 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1091)
Q Consensus 382 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ 461 (1091)
+.|+++|++|+|++.++.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|++
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 94 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQ 94 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhcc
Confidence 46999999999964223579999999999999999999999999999999999999999999999999998888889999
Q ss_pred eeEEeccCccccccHHHHhccCCCCCCH-HHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcC
Q 001371 462 IGLVSQEPVLFTGSIKDNIAYGKDDATT-EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1091)
Q Consensus 462 ia~V~Q~~~Lf~~TIreNI~~g~~~~~~-~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~ 540 (1091)
|+||||+|.+|+.||+|||.++.+..++ +++.++++..++.++++.+|+|+++.+++++.+||||||||++|||||+++
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~ 174 (271)
T 2ixe_A 95 VAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRK 174 (271)
T ss_dssp EEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTC
T ss_pred EEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcC
Confidence 9999999999999999999998654444 667788888999999999999999999999999999999999999999999
Q ss_pred CCEEEeeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchhhhccCeEEEEeCCEEeeecChhHHhcCCCchhHHH
Q 001371 541 PRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQL 618 (1091)
Q Consensus 541 ~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~~~~~~~y~~l 618 (1091)
|+|||||||||+||+.+++.+.+.|+++.+ ++|+|+|||+++.+..||+|++|++|+|++.|+++++++. .+.|.++
T Consensus 175 p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~-~~~~~~~ 253 (271)
T 2ixe_A 175 PRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMER-GGCYRSM 253 (271)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHHH-TSHHHHH
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-cHHHHHH
Confidence 999999999999999999999999998754 8999999999999988999999999999999999999876 6888888
Q ss_pred HHHH
Q 001371 619 IRLQ 622 (1091)
Q Consensus 619 ~~~~ 622 (1091)
++.+
T Consensus 254 ~~~~ 257 (271)
T 2ixe_A 254 VEAL 257 (271)
T ss_dssp HHC-
T ss_pred HHHh
Confidence 7654
No 15
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=5.6e-54 Score=464.81 Aligned_cols=235 Identities=45% Similarity=0.767 Sum_probs=220.1
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhcee
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia 463 (1091)
|+++|++|+|++ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|++|+
T Consensus 2 l~~~~l~~~y~~--~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (243)
T 1mv5_A 2 LSARHVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (243)
T ss_dssp EEEEEEEECSSS--SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEEeCC--CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEE
Confidence 789999999952 357999999999999999999999999999999999999999999999999999888788899999
Q ss_pred EEeccCccccccHHHHhccC-CCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCC
Q 001371 464 LVSQEPVLFTGSIKDNIAYG-KDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR 542 (1091)
Q Consensus 464 ~V~Q~~~Lf~~TIreNI~~g-~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~ 542 (1091)
||||+|.+|++|++|||.++ .+..+++++.++++.+++.++++++|+|++|.+++++.+||||||||++|||||+++|+
T Consensus 80 ~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~ 159 (243)
T 1mv5_A 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (243)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998 55567888999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhccCeEEEEeCCEEeeecChhHHhcCCCchhHHHHHH
Q 001371 543 ILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRL 621 (1091)
Q Consensus 543 IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~~~~~~~y~~l~~~ 621 (1091)
|||||||||+||+.+++.+.+.|+++.+++|+|+|||+++.+..||+|++|++|+|++.|+++++.+. .+.|..++..
T Consensus 160 lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~~~~ 237 (243)
T 1mv5_A 160 ILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYVSE 237 (243)
T ss_dssp EEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHH-CHHHHHHHHC
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhc-cHHHHHHHHh
Confidence 99999999999999999999999887778999999999999988999999999999999999999876 5667777653
No 16
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.8e-51 Score=469.72 Aligned_cols=234 Identities=27% Similarity=0.500 Sum_probs=219.6
Q ss_pred CCcEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhh
Q 001371 381 RGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRK 460 (1091)
Q Consensus 381 ~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~ 460 (1091)
.+.|+++|++|+|+.. +.++|+||||+|++||+++|+||||||||||+++|+|+++ ++|+|.+||+|+.+++.+.+|+
T Consensus 17 ~~~i~~~~l~~~y~~~-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr 94 (390)
T 3gd7_A 17 GGQMTVKDLTAKYTEG-GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRK 94 (390)
T ss_dssp SCCEEEEEEEEESSSS-SCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHH
T ss_pred CCeEEEEEEEEEecCC-CeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhC
Confidence 4679999999999632 4579999999999999999999999999999999999998 8999999999999999999999
Q ss_pred ceeEEeccCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcC
Q 001371 461 KIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1091)
Q Consensus 461 ~ia~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~ 540 (1091)
+|+||+|++.+|+.||+|||.+... ..+++++++++.+++.++++++|.+++|.++++|.+||||||||+||||||+++
T Consensus 95 ~ig~v~Q~~~lf~~tv~enl~~~~~-~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~ 173 (390)
T 3gd7_A 95 AFGVIPQKVFIFSGTFRKNLDPNAA-HSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSK 173 (390)
T ss_dssp TEEEESCCCCCCSEEHHHHHCTTCC-SCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTT
T ss_pred CEEEEcCCcccCccCHHHHhhhccc-cCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcC
Confidence 9999999999999999999986543 578899999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhccCeEEEEeCCEEeeecChhHHhcCCCchhHH
Q 001371 541 PRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQ 617 (1091)
Q Consensus 541 ~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~~~~~~~y~~ 617 (1091)
|+|||||||||+||+.+++.+.+.|+++.+++|+|+|||+++.+..||+|+||++|+|++.|+++|+.+++...|..
T Consensus 174 P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~~p~~~~va 250 (390)
T 3gd7_A 174 AKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFVA 250 (390)
T ss_dssp CCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHHCCSBHHHH
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCchHHH
Confidence 99999999999999999999999999877789999999999999999999999999999999999999876555543
No 17
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=1.4e-50 Score=435.76 Aligned_cols=225 Identities=32% Similarity=0.539 Sum_probs=206.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhce
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~i 462 (1091)
.|+++|++|+|++. +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +|
T Consensus 3 ~l~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i 68 (237)
T 2cbz_A 3 SITVRNATFTWARS-DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SV 68 (237)
T ss_dssp CEEEEEEEEESCTT-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CE
T ss_pred eEEEEEEEEEeCCC-CCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EE
Confidence 38999999999632 35799999999999999999999999999999999999999999999999 59
Q ss_pred eEEeccCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCC
Q 001371 463 GLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR 542 (1091)
Q Consensus 463 a~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~ 542 (1091)
+||||+|++|+.|++|||.++.+ .++++..++++.+++.+++..+|.|++|.+++++.+||||||||++|||||+++|+
T Consensus 69 ~~v~Q~~~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~ 147 (237)
T 2cbz_A 69 AYVPQQAWIQNDSLRENILFGCQ-LEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNAD 147 (237)
T ss_dssp EEECSSCCCCSEEHHHHHHTTSC-CCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEEcCCCcCCCcCHHHHhhCccc-cCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999864 34456778888899999999999999999999999999999999999999999999
Q ss_pred EEEeeCCCCCCCHHhHHHHHHHHH---HHcCCCeEEEEccCchhhhccCeEEEEeCCEEeeecChhHHhcCCCchhHHHH
Q 001371 543 ILLLDEATSALDAESEKVVQEALD---RIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLI 619 (1091)
Q Consensus 543 IliLDE~tSaLD~~te~~i~~~l~---~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~~~~~~~y~~l~ 619 (1091)
|||||||||+||+.+++.+.+.|. ++.+++|+|+|||+++.+..||+|++|++|+|++.|+++++++. .+.|.+++
T Consensus 148 lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~~ 226 (237)
T 2cbz_A 148 IYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLAR-DGAFAEFL 226 (237)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHHH-TSHHHHHH
T ss_pred EEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhhc-cHHHHHHH
Confidence 999999999999999999999884 34468999999999999989999999999999999999999887 78888888
Q ss_pred HHHh
Q 001371 620 RLQE 623 (1091)
Q Consensus 620 ~~~~ 623 (1091)
..|.
T Consensus 227 ~~~~ 230 (237)
T 2cbz_A 227 RTYA 230 (237)
T ss_dssp HHTC
T ss_pred HHHH
Confidence 7654
No 18
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=2.7e-50 Score=431.61 Aligned_cols=221 Identities=28% Similarity=0.470 Sum_probs=200.3
Q ss_pred CcEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhc
Q 001371 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1091)
Q Consensus 382 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ 461 (1091)
+.|+++|++|+|++. ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++| +
T Consensus 5 ~~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~ 70 (229)
T 2pze_A 5 TEVVMENVTAFWEEG-GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------R 70 (229)
T ss_dssp EEEEEEEEEECSSTT-SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------C
T ss_pred ceEEEEEEEEEeCCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------E
Confidence 358999999999632 35799999999999999999999999999999999999999999999999 6
Q ss_pred eeEEeccCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCC
Q 001371 462 IGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1091)
Q Consensus 462 ia~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~ 541 (1091)
|+||||+|++|++|++|||.++.+ ..+.++.++++.+++.++++.+|.+++|.+++++.+||||||||++|||||+++|
T Consensus 71 i~~v~q~~~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p 149 (229)
T 2pze_A 71 ISFCSQFSWIMPGTIKENIIFGVS-YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDA 149 (229)
T ss_dssp EEEECSSCCCCSBCHHHHHHTTSC-CCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCC
T ss_pred EEEEecCCcccCCCHHHHhhccCC-cChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999864 3455677788889999999999999999999999999999999999999999999
Q ss_pred CEEEeeCCCCCCCHHhHHHHHHHH-HHHcCCCeEEEEccCchhhhccCeEEEEeCCEEeeecChhHHhcCCCchhHHH
Q 001371 542 RILLLDEATSALDAESEKVVQEAL-DRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQL 618 (1091)
Q Consensus 542 ~IliLDE~tSaLD~~te~~i~~~l-~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~~~~~~~y~~l 618 (1091)
++||||||||+||+.+++.+.+.+ ++..+++|+|+|||+++.+..||+|++|++|+|++.|+++++.++ .+.|.++
T Consensus 150 ~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~ 226 (229)
T 2pze_A 150 DLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNL-QPDFSSK 226 (229)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHTC---CHHHH
T ss_pred CEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHhc-ChHHHHH
Confidence 999999999999999999998864 555568999999999999988999999999999999999999876 4555544
No 19
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=6e-48 Score=433.64 Aligned_cols=225 Identities=30% Similarity=0.495 Sum_probs=193.7
Q ss_pred CcEEEEeEEEECCCCC-CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHH---
Q 001371 382 GDIELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW--- 457 (1091)
Q Consensus 382 ~~I~~~~vsf~Y~~~~-~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~--- 457 (1091)
.-|+++|++++|+... ..++|+||||+|++||++||+||||||||||+++|.|+++|++|+|.+||.|+..++.+.
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~ 102 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 102 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHH
T ss_pred ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence 3599999999996421 246999999999999999999999999999999999999999999999999999998765
Q ss_pred HhhceeEEeccCccccc-cHHHHhccCCC--CCC----HHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHH
Q 001371 458 IRKKIGLVSQEPVLFTG-SIKDNIAYGKD--DAT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR 530 (1091)
Q Consensus 458 lr~~ia~V~Q~~~Lf~~-TIreNI~~g~~--~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQR 530 (1091)
+|++||||+|++.+|.. ||+|||.|+.. ..+ ++++.++++.+++.+...+ ...+||||||||
T Consensus 103 ~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~-----------~~~~LSGGqkQR 171 (366)
T 3tui_C 103 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDS-----------YPSNLSGGQKQR 171 (366)
T ss_dssp HHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTC-----------CTTTSCHHHHHH
T ss_pred HhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcC-----------ChhhCCHHHHHH
Confidence 47889999999999875 99999988621 122 2346667777766554333 346899999999
Q ss_pred HHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEccCchhhhc-cCeEEEEeCCEEeeecChhHH
Q 001371 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1091)
Q Consensus 531 ialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL 607 (1091)
++|||||+.+|+|||||||||+||+.+.+.|.+.|+++. .++|+|+|||+++.+.. ||+|+||++|+|++.|+++|+
T Consensus 172 VaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev 251 (366)
T 3tui_C 172 VAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV 251 (366)
T ss_dssp HHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHH
T ss_pred HHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999999999999999999999999998874 38999999999999865 999999999999999999999
Q ss_pred hcCCCchhHH
Q 001371 608 VEDPEGAYSQ 617 (1091)
Q Consensus 608 ~~~~~~~y~~ 617 (1091)
..++...|.+
T Consensus 252 ~~~p~~~~~~ 261 (366)
T 3tui_C 252 FSHPKTPLAQ 261 (366)
T ss_dssp HSSCCSHHHH
T ss_pred HhCCCcHHHH
Confidence 9875555543
No 20
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=1.3e-47 Score=419.77 Aligned_cols=215 Identities=24% Similarity=0.476 Sum_probs=186.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCcccc--CCChHHHhh
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLK--EFQLQWIRK 460 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~--~~~~~~lr~ 460 (1091)
-|+++|++|+|++ ..++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. +.+...+|+
T Consensus 7 ~l~i~~ls~~y~~--~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 84 (275)
T 3gfo_A 7 ILKVEELNYNYSD--GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRE 84 (275)
T ss_dssp EEEEEEEEEECTT--SCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHH
T ss_pred EEEEEEEEEEECC--CCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhC
Confidence 4899999999964 246999999999999999999999999999999999999999999999999994 445567899
Q ss_pred ceeEEeccC--ccccccHHHHhccCCC--CCCH----HHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHH
Q 001371 461 KIGLVSQEP--VLFTGSIKDNIAYGKD--DATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIA 532 (1091)
Q Consensus 461 ~ia~V~Q~~--~Lf~~TIreNI~~g~~--~~~~----~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRia 532 (1091)
+||||+|+| .+|+.|++|||.|+.. ..+. +++.++++.+++.+. ......+||||||||++
T Consensus 85 ~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~-----------~~~~~~~LSgGqkQRv~ 153 (275)
T 3gfo_A 85 SIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHL-----------KDKPTHCLSFGQKKRVA 153 (275)
T ss_dssp SEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGG-----------TTSBGGGSCHHHHHHHH
T ss_pred cEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchh-----------hcCCcccCCHHHHHHHH
Confidence 999999998 5788999999988631 1233 345566666665443 23344679999999999
Q ss_pred HHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEccCchhhhc-cCeEEEEeCCEEeeecChhHHhc
Q 001371 533 IARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVE 609 (1091)
Q Consensus 533 lARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~ 609 (1091)
|||||+.+|+|||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+|++.|+++|+..
T Consensus 154 iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 154 IAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 233 (275)
T ss_dssp HHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTH
T ss_pred HHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999999999999999999999999999998865 38999999999999864 99999999999999999999976
Q ss_pred C
Q 001371 610 D 610 (1091)
Q Consensus 610 ~ 610 (1091)
.
T Consensus 234 ~ 234 (275)
T 3gfo_A 234 E 234 (275)
T ss_dssp H
T ss_pred C
Confidence 4
No 21
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=6.8e-48 Score=414.33 Aligned_cols=215 Identities=27% Similarity=0.429 Sum_probs=180.7
Q ss_pred EEEEeEEEECCCCC-CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHH----
Q 001371 384 IELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI---- 458 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~-~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~l---- 458 (1091)
|+++|++|+|++++ ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.+++.+.+
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence 78999999996432 2469999999999999999999999999999999999999999999999999999987664
Q ss_pred hhceeEEeccCccccc-cHHHHhccCC-----CCCCH----HHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHH
Q 001371 459 RKKIGLVSQEPVLFTG-SIKDNIAYGK-----DDATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1091)
Q Consensus 459 r~~ia~V~Q~~~Lf~~-TIreNI~~g~-----~~~~~----~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQk 528 (1091)
|++|+||+|+|.+|.. |++||+.++. ...+. +++.++++.+++.+. .......+||||||
T Consensus 82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGq~ 151 (235)
T 3tif_A 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEER----------FANHKPNQLSGGQQ 151 (235)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGG----------GTTCCGGGSCHHHH
T ss_pred hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChh----------hhhCChhhCCHHHH
Confidence 4579999999999986 9999998741 11222 234444555444221 11345678999999
Q ss_pred HHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchhhhccCeEEEEeCCEEeeecChhH
Q 001371 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSK 606 (1091)
Q Consensus 529 QRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~e 606 (1091)
||++|||||+++|+|||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++..+.||+|++|++|+|++.|+.++
T Consensus 152 QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~~ 231 (235)
T 3tif_A 152 QRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRG 231 (235)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC-
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChhh
Confidence 999999999999999999999999999999999999988753 899999999999888899999999999999998877
Q ss_pred Hh
Q 001371 607 LV 608 (1091)
Q Consensus 607 L~ 608 (1091)
+.
T Consensus 232 ~~ 233 (235)
T 3tif_A 232 FD 233 (235)
T ss_dssp --
T ss_pred hc
Confidence 53
No 22
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=7.6e-47 Score=407.83 Aligned_cols=219 Identities=25% Similarity=0.444 Sum_probs=186.3
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHH-hhc
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI-RKK 461 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~l-r~~ 461 (1091)
-|+++|++|+|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+ |++
T Consensus 6 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (240)
T 1ji0_A 6 VLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred eEEEEeEEEEECC---eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCC
Confidence 3899999999963 479999999999999999999999999999999999999999999999999988877665 456
Q ss_pred eeEEeccCccccc-cHHHHhccCC-CCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhc
Q 001371 462 IGLVSQEPVLFTG-SIKDNIAYGK-DDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1091)
Q Consensus 462 ia~V~Q~~~Lf~~-TIreNI~~g~-~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~ 539 (1091)
|+||||++.+|.+ |++||+.++. +..+.++..+.+ .+.++.++ |++...+....+||||||||++|||||++
T Consensus 83 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~-----~~~l~~~~-~l~~~~~~~~~~LSgGq~qrv~lAraL~~ 156 (240)
T 1ji0_A 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDL-----EWIFSLFP-RLKERLKQLGGTLSGGEQQMLAIGRALMS 156 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHH-----HHHHHHCH-HHHTTTTSBSSSSCHHHHHHHHHHHHHTT
T ss_pred EEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHH-----HHHHHHcc-cHhhHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 9999999999987 9999999874 222222222222 22344443 34445566778999999999999999999
Q ss_pred CCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhh-hccCeEEEEeCCEEeeecChhHHhcC
Q 001371 540 DPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHSKLVED 610 (1091)
Q Consensus 540 ~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i-~~aD~Iivl~~G~Ive~Gt~~eL~~~ 610 (1091)
+|+|||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+ +.||+|++|++|++++.|+++++.+.
T Consensus 157 ~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 229 (240)
T 1ji0_A 157 RPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcC
Confidence 999999999999999999999999998875 589999999999876 56999999999999999999998753
No 23
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=1.1e-46 Score=415.42 Aligned_cols=209 Identities=28% Similarity=0.478 Sum_probs=179.0
Q ss_pred CcEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhc
Q 001371 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1091)
Q Consensus 382 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ 461 (1091)
+.|+++|++|.| .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++| +
T Consensus 39 ~~l~~~~l~~~~-----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g-------------~ 100 (290)
T 2bbs_A 39 DSLSFSNFSLLG-----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------R 100 (290)
T ss_dssp -----------C-----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-------------C
T ss_pred ceEEEEEEEEcC-----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-------------E
Confidence 469999999964 3699999999999999999999999999999999999999999999998 6
Q ss_pred eeEEeccCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCC
Q 001371 462 IGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1091)
Q Consensus 462 ia~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~ 541 (1091)
|+||||+|.+|++|++|||. +.. ..+.++.++++.+++.+++..+|++++|.+++++.+||||||||++|||||+++|
T Consensus 101 i~~v~Q~~~l~~~tv~enl~-~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p 178 (290)
T 2bbs_A 101 ISFCSQNSWIMPGTIKENII-GVS-YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDA 178 (290)
T ss_dssp EEEECSSCCCCSSBHHHHHH-TTC-CCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCC
T ss_pred EEEEeCCCccCcccHHHHhh-Ccc-cchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCC
Confidence 99999999999999999998 643 3455667788889999999999999999999999999999999999999999999
Q ss_pred CEEEeeCCCCCCCHHhHHHHHHHH-HHHcCCCeEEEEccCchhhhccCeEEEEeCCEEeeecChhHHhcC
Q 001371 542 RILLLDEATSALDAESEKVVQEAL-DRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610 (1091)
Q Consensus 542 ~IliLDE~tSaLD~~te~~i~~~l-~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~~~ 610 (1091)
++||||||||+||+.+++.+.+.+ +++.+++|+|+|||+++.+..||+|++|++|++++.|+++|+.+.
T Consensus 179 ~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 248 (290)
T 2bbs_A 179 DLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNL 248 (290)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECHHHHHHH
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcCCEEEEEECCeEEEeCCHHHHhhh
Confidence 999999999999999999998864 444468999999999999988999999999999999999999764
No 24
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=1.4e-46 Score=409.20 Aligned_cols=214 Identities=31% Similarity=0.487 Sum_probs=185.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCcccc--CCChHHHhh
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLK--EFQLQWIRK 460 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~--~~~~~~lr~ 460 (1091)
-|+++|++|+|+ +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. ..+...+|+
T Consensus 24 ~l~i~~l~~~y~---~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 100 (263)
T 2olj_A 24 MIDVHQLKKSFG---SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVRE 100 (263)
T ss_dssp SEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHH
T ss_pred eEEEEeEEEEEC---CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhC
Confidence 499999999995 347999999999999999999999999999999999999999999999999985 344567788
Q ss_pred ceeEEeccCccccc-cHHHHhccCC---CCCC----HHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHH
Q 001371 461 KIGLVSQEPVLFTG-SIKDNIAYGK---DDAT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIA 532 (1091)
Q Consensus 461 ~ia~V~Q~~~Lf~~-TIreNI~~g~---~~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRia 532 (1091)
+|+||+|++.+|.. |++|||.++. ...+ ++++.++++..++.++ ......+||||||||++
T Consensus 101 ~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~-----------~~~~~~~LSgGqkQRv~ 169 (263)
T 2olj_A 101 EVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDK-----------AHAYPDSLSGGQAQRVA 169 (263)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGG-----------TTSCGGGSCHHHHHHHH
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchH-----------hcCChhhCCHHHHHHHH
Confidence 99999999999886 9999998852 1122 2345566666665443 23345689999999999
Q ss_pred HHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhh-ccCeEEEEeCCEEeeecChhHHhcC
Q 001371 533 IARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVED 610 (1091)
Q Consensus 533 lARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL~~~ 610 (1091)
|||||+.+|++||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+. .||+|++|++|+|++.|+++++.+.
T Consensus 170 lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
T 2olj_A 170 IARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 249 (263)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999998874 4799999999999986 5999999999999999999999865
No 25
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=2.3e-46 Score=409.06 Aligned_cols=213 Identities=27% Similarity=0.442 Sum_probs=188.8
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhce
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~i 462 (1091)
-|+++|++++|+ +.++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.+.+.+.+|+.+
T Consensus 11 ~l~~~~l~~~~~---~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i 87 (266)
T 4g1u_C 11 LLEASHLHYHVQ---QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTR 87 (266)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHE
T ss_pred eEEEEeEEEEeC---CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheE
Confidence 489999999996 35799999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeccCcc-ccccHHHHhccCCC----CCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHh
Q 001371 463 GLVSQEPVL-FTGSIKDNIAYGKD----DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1091)
Q Consensus 463 a~V~Q~~~L-f~~TIreNI~~g~~----~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAl 537 (1091)
+||+|++.+ |+.|++||+.++.. ...++++.++++..++.+... ....+||||||||++|||||
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGq~QRv~iAraL 156 (266)
T 4g1u_C 88 AVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQ-----------RDYRVLSGGEQQRVQLARVL 156 (266)
T ss_dssp EEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTT-----------SBGGGCCHHHHHHHHHHHHH
T ss_pred EEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhc-----------CCcccCCHHHHHHHHHHHHH
Confidence 999999987 67899999998743 223456777777776644322 23357999999999999999
Q ss_pred hc------CCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchhhh-ccCeEEEEeCCEEeeecChhHHh
Q 001371 538 LK------DPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLV 608 (1091)
Q Consensus 538 l~------~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL~ 608 (1091)
++ +|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|+|++.|+++|+.
T Consensus 157 ~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 157 AQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp HHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHC
T ss_pred hcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 99 9999999999999999999999999988743 469999999999986 59999999999999999999997
Q ss_pred c
Q 001371 609 E 609 (1091)
Q Consensus 609 ~ 609 (1091)
.
T Consensus 237 ~ 237 (266)
T 4g1u_C 237 N 237 (266)
T ss_dssp C
T ss_pred C
Confidence 5
No 26
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=3.5e-46 Score=419.57 Aligned_cols=221 Identities=29% Similarity=0.515 Sum_probs=188.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccC--CChHHHhh
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE--FQLQWIRK 460 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~--~~~~~lr~ 460 (1091)
.|+++|++++|+ +.++|+||||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++.+ .+....|+
T Consensus 4 ~l~i~~ls~~y~---~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r 80 (359)
T 3fvq_A 4 ALHIGHLSKSFQ---NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRER 80 (359)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGS
T ss_pred EEEEEeEEEEEC---CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhC
Confidence 489999999995 3579999999999999999999999999999999999999999999999999943 23334577
Q ss_pred ceeEEeccCcccc-ccHHHHhccCCCC--C----CHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHH
Q 001371 461 KIGLVSQEPVLFT-GSIKDNIAYGKDD--A----TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1091)
Q Consensus 461 ~ia~V~Q~~~Lf~-~TIreNI~~g~~~--~----~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRial 533 (1091)
+||||+|++.+|. .||+|||.||... . .++++.++++.+++.++.++. ..+||||||||++|
T Consensus 81 ~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~-----------~~~LSGGq~QRVal 149 (359)
T 3fvq_A 81 RLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRY-----------PHELSGGQQQRAAL 149 (359)
T ss_dssp CCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSC-----------GGGSCHHHHHHHHH
T ss_pred CEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCC-----------hhhCCHHHHHHHHH
Confidence 8999999999996 5999999998431 1 134567777777766544433 35799999999999
Q ss_pred HHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEccCchhhh-ccCeEEEEeCCEEeeecChhHHhcC
Q 001371 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVED 610 (1091)
Q Consensus 534 ARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL~~~ 610 (1091)
||||+.+|++||||||||+||+.+...+.+.|.++. .++|+|+|||+++.+. .||+|+||++|+|++.|+++|+..+
T Consensus 150 ArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~ 229 (359)
T 3fvq_A 150 ARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQ 229 (359)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhC
Confidence 999999999999999999999999999988776653 4899999999998875 5999999999999999999999987
Q ss_pred CCchhHH
Q 001371 611 PEGAYSQ 617 (1091)
Q Consensus 611 ~~~~y~~ 617 (1091)
+...|..
T Consensus 230 p~~~~~a 236 (359)
T 3fvq_A 230 PADLDAA 236 (359)
T ss_dssp CSCHHHH
T ss_pred cccHHHH
Confidence 5554443
No 27
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=3.1e-46 Score=422.70 Aligned_cols=219 Identities=26% Similarity=0.479 Sum_probs=190.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhce
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~i 462 (1091)
.|+++|++++|+ +.++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+.. ++.|
T Consensus 3 ~l~~~~l~~~yg---~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~i 77 (381)
T 3rlf_A 3 SVQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGV 77 (381)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCE
T ss_pred EEEEEeEEEEEC---CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCE
Confidence 489999999996 35799999999999999999999999999999999999999999999999999988765 4679
Q ss_pred eEEeccCccccc-cHHHHhccCCC--CCC----HHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHH
Q 001371 463 GLVSQEPVLFTG-SIKDNIAYGKD--DAT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1091)
Q Consensus 463 a~V~Q~~~Lf~~-TIreNI~~g~~--~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialAR 535 (1091)
+||+|++.||.. ||+|||.||.. ..+ ++++.++++..++.++.++ ...+||||||||++|||
T Consensus 78 g~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r-----------~p~~LSGGqrQRVaiAr 146 (381)
T 3rlf_A 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDR-----------KPKALSGGQRQRVAIGR 146 (381)
T ss_dssp EEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTC-----------CGGGSCHHHHHHHHHHH
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcC-----------ChhHCCHHHHHHHHHHH
Confidence 999999999975 99999998731 122 3456677777776554433 33579999999999999
Q ss_pred HhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchhhh-ccCeEEEEeCCEEeeecChhHHhcCCC
Q 001371 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVEDPE 612 (1091)
Q Consensus 536 All~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL~~~~~ 612 (1091)
||+.+|+|||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+. .||+|+||++|+|++.|+++|+...+.
T Consensus 147 AL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~p~ 226 (381)
T 3rlf_A 147 TLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPA 226 (381)
T ss_dssp HHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCS
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCCc
Confidence 99999999999999999999999999999988743 899999999998875 599999999999999999999998755
Q ss_pred chhHH
Q 001371 613 GAYSQ 617 (1091)
Q Consensus 613 ~~y~~ 617 (1091)
..|..
T Consensus 227 ~~~v~ 231 (381)
T 3rlf_A 227 DRFVA 231 (381)
T ss_dssp BHHHH
T ss_pred cHHHH
Confidence 55543
No 28
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=6.3e-46 Score=405.39 Aligned_cols=214 Identities=28% Similarity=0.453 Sum_probs=186.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccC----------
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE---------- 452 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~---------- 452 (1091)
-|+++|++++|+ +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++..
T Consensus 6 ~l~i~~l~~~y~---~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (262)
T 1b0u_A 6 KLHVIDLHKRYG---GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 82 (262)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred eEEEeeEEEEEC---CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccc
Confidence 489999999995 3479999999999999999999999999999999999999999999999999862
Q ss_pred CCh---HHHhhceeEEeccCccccc-cHHHHhccCC---CCCC----HHHHHHHHHHcccHHH-HhhCCCCcccccccCC
Q 001371 453 FQL---QWIRKKIGLVSQEPVLFTG-SIKDNIAYGK---DDAT----TEEIRVATELANAAKF-IDKLPQGIDTLVGEHG 520 (1091)
Q Consensus 453 ~~~---~~lr~~ia~V~Q~~~Lf~~-TIreNI~~g~---~~~~----~~~i~~a~~~a~l~~~-i~~lp~G~~T~vge~G 520 (1091)
++. ..+|++|+||+|++.+|.. |++|||.++. ...+ ++++.++++..++.++ ..+ ..
T Consensus 83 ~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-----------~~ 151 (262)
T 1b0u_A 83 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGK-----------YP 151 (262)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTS-----------CG
T ss_pred cChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcC-----------Cc
Confidence 443 3568899999999999876 9999998842 1122 3456677777777665 333 34
Q ss_pred CCCChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhh-ccCeEEEEeCCEE
Q 001371 521 TQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKI 598 (1091)
Q Consensus 521 ~~LSGGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~-~aD~Iivl~~G~I 598 (1091)
.+||||||||++|||||+.+|+|||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+. .||+|++|++|+|
T Consensus 152 ~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i 231 (262)
T 1b0u_A 152 VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 231 (262)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 5799999999999999999999999999999999999999999998864 4799999999999986 5999999999999
Q ss_pred eeecChhHHhcC
Q 001371 599 VEKGTHSKLVED 610 (1091)
Q Consensus 599 ve~Gt~~eL~~~ 610 (1091)
++.|+++++.+.
T Consensus 232 ~~~g~~~~~~~~ 243 (262)
T 1b0u_A 232 EEEGDPEQVFGN 243 (262)
T ss_dssp EEEECHHHHHHS
T ss_pred EEeCCHHHHHhC
Confidence 999999999865
No 29
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=5.7e-46 Score=403.20 Aligned_cols=213 Identities=30% Similarity=0.471 Sum_probs=186.3
Q ss_pred CcEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhc
Q 001371 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1091)
Q Consensus 382 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ 461 (1091)
+.|+++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+ ....+|++
T Consensus 14 ~~l~i~~l~~~y~---~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~~ 89 (256)
T 1vpl_A 14 GAVVVKDLRKRIG---KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKL 89 (256)
T ss_dssp CCEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTT
T ss_pred CeEEEEEEEEEEC---CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhhc
Confidence 4699999999995 3479999999999999999999999999999999999999999999999999876 45678889
Q ss_pred eeEEeccCccccc-cHHHHhccCCC--CCCH----HHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHH
Q 001371 462 IGLVSQEPVLFTG-SIKDNIAYGKD--DATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1091)
Q Consensus 462 ia~V~Q~~~Lf~~-TIreNI~~g~~--~~~~----~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialA 534 (1091)
|+||||++.+|.. |++||+.++.. ..+. +++.++++..++.++.. ....+||||||||++||
T Consensus 90 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LSgGq~qRv~lA 158 (256)
T 1vpl_A 90 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIK-----------DRVSTYSKGMVRKLLIA 158 (256)
T ss_dssp EEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGG-----------SBGGGCCHHHHHHHHHH
T ss_pred EEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhc-----------CChhhCCHHHHHHHHHH
Confidence 9999999999886 99999987521 1222 35666677766654332 33467999999999999
Q ss_pred HHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCeEEEEeCCEEeeecChhHHhc
Q 001371 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVE 609 (1091)
Q Consensus 535 RAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~ 609 (1091)
|||+++|+|||||||||+||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 159 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 159 RALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 99999999999999999999999999999998875 58999999999999876 99999999999999999999864
No 30
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=1.3e-45 Score=404.16 Aligned_cols=213 Identities=31% Similarity=0.558 Sum_probs=188.1
Q ss_pred EEEEeEEEECCCCCC--CccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhc
Q 001371 384 IELRDVYFSYPARPN--EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~--~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ 461 (1091)
|+++|++|+|+.... .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+. .+|++
T Consensus 3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~~ 79 (266)
T 2yz2_A 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRRN 79 (266)
T ss_dssp EEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGGG
T ss_pred EEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---Hhhhh
Confidence 789999999962111 4699999999999999999999999999999999999999999999999998653 67889
Q ss_pred eeEEeccC--ccccccHHHHhccCCC-----CCCHHHHHHHHHHcccH--HHHhhCCCCcccccccCCCCCChHHHHHHH
Q 001371 462 IGLVSQEP--VLFTGSIKDNIAYGKD-----DATTEEIRVATELANAA--KFIDKLPQGIDTLVGEHGTQLSGGQKQRIA 532 (1091)
Q Consensus 462 ia~V~Q~~--~Lf~~TIreNI~~g~~-----~~~~~~i~~a~~~a~l~--~~i~~lp~G~~T~vge~G~~LSGGQkQRia 532 (1091)
|+||+|+| .+++.|++|||.++.. ...++++.++++..++. ++..+.| .+||||||||++
T Consensus 80 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----------~~LSgGq~qRv~ 148 (266)
T 2yz2_A 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVP-----------FFLSGGEKRRVA 148 (266)
T ss_dssp EEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCG-----------GGSCHHHHHHHH
T ss_pred EEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCCh-----------hhCCHHHHHHHH
Confidence 99999997 5778999999998732 12356788899999887 6655444 579999999999
Q ss_pred HHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCeEEEEeCCEEeeecChhHHhcC
Q 001371 533 IARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1091)
Q Consensus 533 lARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~~ 610 (1091)
|||||+++|+|||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 149 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 228 (266)
T 2yz2_A 149 IASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228 (266)
T ss_dssp HHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred HHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999998874 58999999999999875 999999999999999999998754
No 31
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=4.7e-46 Score=397.29 Aligned_cols=208 Identities=25% Similarity=0.360 Sum_probs=178.5
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHH---Hh
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW---IR 459 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~---lr 459 (1091)
-|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... +|
T Consensus 4 ~l~~~~l~~~y~~---~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (224)
T 2pcj_A 4 ILRAENIKKVIRG---YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLR 80 (224)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHH
T ss_pred EEEEEeEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHH
Confidence 3899999999963 47999999999999999999999999999999999999999999999999998877543 44
Q ss_pred -hceeEEeccCcccc-ccHHHHhccCCC--CCC----HHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHH
Q 001371 460 -KKIGLVSQEPVLFT-GSIKDNIAYGKD--DAT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRI 531 (1091)
Q Consensus 460 -~~ia~V~Q~~~Lf~-~TIreNI~~g~~--~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRi 531 (1091)
++|+||||++.+|. .|++||+.++.. ..+ ++++.++++..++.+ .......+||||||||+
T Consensus 81 ~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGq~qrv 149 (224)
T 2pcj_A 81 NRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGD-----------KLSRKPYELSGGEQQRV 149 (224)
T ss_dssp HHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTT-----------CTTCCGGGSCHHHHHHH
T ss_pred hCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCch-----------hhhCChhhCCHHHHHHH
Confidence 78999999999887 599999987521 112 234555555555433 23334468999999999
Q ss_pred HHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhhccCeEEEEeCCEEeeecCh
Q 001371 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTH 604 (1091)
Q Consensus 532 alARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~ 604 (1091)
+|||||+.+|++||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+..||+|++|++|++++.|+.
T Consensus 150 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~~ 223 (224)
T 2pcj_A 150 AIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEITR 223 (224)
T ss_dssp HHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEeee
Confidence 99999999999999999999999999999999998874 48999999999998888999999999999999873
No 32
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=2e-45 Score=400.99 Aligned_cols=210 Identities=23% Similarity=0.375 Sum_probs=181.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCCh-HHHhhc
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL-QWIRKK 461 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~-~~lr~~ 461 (1091)
-|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+. ..+|++
T Consensus 7 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 83 (257)
T 1g6h_A 7 ILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 83 (257)
T ss_dssp EEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred EEEEeeeEEEECC---EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 3899999999963 479999999999999999999999999999999999999999999999999987765 346788
Q ss_pred eeEEeccCcccc-ccHHHHhccCCCC---------------CC-H---HHHHHHHHHcccHHHHhhCCCCcccccccCCC
Q 001371 462 IGLVSQEPVLFT-GSIKDNIAYGKDD---------------AT-T---EEIRVATELANAAKFIDKLPQGIDTLVGEHGT 521 (1091)
Q Consensus 462 ia~V~Q~~~Lf~-~TIreNI~~g~~~---------------~~-~---~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~ 521 (1091)
|+||+|++.+|. .|++|||.++... .+ + +++.++++ .+ |++........
T Consensus 84 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---------~~--~l~~~~~~~~~ 152 (257)
T 1g6h_A 84 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILE---------FL--KLSHLYDRKAG 152 (257)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHH---------HT--TCGGGTTSBGG
T ss_pred EEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHH---------Hc--CCchhhCCCch
Confidence 999999999886 6999999986321 11 1 22333333 33 44444555667
Q ss_pred CCChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhh-ccCeEEEEeCCEEe
Q 001371 522 QLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIV 599 (1091)
Q Consensus 522 ~LSGGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~-~aD~Iivl~~G~Iv 599 (1091)
+||||||||++|||||+++|+|||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+. .||+|++|++|+|+
T Consensus 153 ~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~ 232 (257)
T 1g6h_A 153 ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQII 232 (257)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEE
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 899999999999999999999999999999999999999999998864 4799999999999875 59999999999999
Q ss_pred eecChhH
Q 001371 600 EKGTHSK 606 (1091)
Q Consensus 600 e~Gt~~e 606 (1091)
+.|+++|
T Consensus 233 ~~g~~~~ 239 (257)
T 1g6h_A 233 AEGRGEE 239 (257)
T ss_dssp EEEESHH
T ss_pred EEeCHHH
Confidence 9999999
No 33
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=3e-45 Score=413.82 Aligned_cols=217 Identities=29% Similarity=0.528 Sum_probs=190.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhce
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~i 462 (1091)
.|+++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++.+++.. +++|
T Consensus 3 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 77 (359)
T 2yyz_A 3 SIRVVNLKKYFG---KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREV 77 (359)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTE
T ss_pred EEEEEEEEEEEC---CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCcE
Confidence 389999999995 34799999999999999999999999999999999999999999999999999887754 5789
Q ss_pred eEEeccCccccc-cHHHHhccCCCC--CC----HHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHH
Q 001371 463 GLVSQEPVLFTG-SIKDNIAYGKDD--AT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1091)
Q Consensus 463 a~V~Q~~~Lf~~-TIreNI~~g~~~--~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialAR 535 (1091)
+||+|++.+|.. |++|||.|+... .+ ++++.++++..++.++.++.| .+||||||||++|||
T Consensus 78 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----------~~LSgGq~QRvalAr 146 (359)
T 2yyz_A 78 GMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKP-----------TQLSGGQQQRVALAR 146 (359)
T ss_dssp EEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHHHHHHHH
Confidence 999999999975 999999997431 11 346777888887766554444 579999999999999
Q ss_pred HhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchhh-hccCeEEEEeCCEEeeecChhHHhcCCC
Q 001371 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHSKLVEDPE 612 (1091)
Q Consensus 536 All~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i-~~aD~Iivl~~G~Ive~Gt~~eL~~~~~ 612 (1091)
||+++|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+ ..||+|++|++|+|++.|+++|+.+++.
T Consensus 147 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p~ 226 (359)
T 2yyz_A 147 ALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSPK 226 (359)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCS
T ss_pred HHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcc
Confidence 99999999999999999999999999999988643 79999999999987 4699999999999999999999987644
Q ss_pred chh
Q 001371 613 GAY 615 (1091)
Q Consensus 613 ~~y 615 (1091)
..|
T Consensus 227 ~~~ 229 (359)
T 2yyz_A 227 NMF 229 (359)
T ss_dssp BHH
T ss_pred cHH
Confidence 443
No 34
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=1.3e-45 Score=405.60 Aligned_cols=213 Identities=24% Similarity=0.365 Sum_probs=183.5
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCcccc--CCChHHHhh
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLK--EFQLQWIRK 460 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~--~~~~~~lr~ 460 (1091)
-|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..+...+|+
T Consensus 21 ~l~~~~l~~~y~~---~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 97 (279)
T 2ihy_A 21 LIQLDQIGRMKQG---KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQ 97 (279)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHT
T ss_pred eEEEEeEEEEECC---EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcC
Confidence 5999999999963 47999999999999999999999999999999999999999999999999998 777888899
Q ss_pred ceeEEeccCcc-ccc--cHHHHhccCCCC-------CCH---HHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHH
Q 001371 461 KIGLVSQEPVL-FTG--SIKDNIAYGKDD-------ATT---EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQ 527 (1091)
Q Consensus 461 ~ia~V~Q~~~L-f~~--TIreNI~~g~~~-------~~~---~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQ 527 (1091)
+|+||+|++.+ |+. |++|||.++... .++ +++.++++..++.++ ......+|||||
T Consensus 98 ~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgGq 166 (279)
T 2ihy_A 98 HIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAK-----------AQQYIGYLSTGE 166 (279)
T ss_dssp TEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGG-----------TTSBGGGSCHHH
T ss_pred cEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhH-----------hcCChhhCCHHH
Confidence 99999999875 555 999999986411 122 345555665555432 334456799999
Q ss_pred HHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC-CCeE--EEEccCchhhh-ccCeEEEEeCCEEeeecC
Q 001371 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTT--VIVAHRLSTVR-NADMIAVIHRGKIVEKGT 603 (1091)
Q Consensus 528 kQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~-~~T~--I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt 603 (1091)
|||++|||||+.+|++||||||||+||+.+.+.+.+.|+++.+ ++|+ |+|||+++.+. .||+|++|++|+|++.|+
T Consensus 167 kqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~ 246 (279)
T 2ihy_A 167 KQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGA 246 (279)
T ss_dssp HHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999988643 7999 99999999875 599999999999999999
Q ss_pred hhHHhc
Q 001371 604 HSKLVE 609 (1091)
Q Consensus 604 ~~eL~~ 609 (1091)
++++.+
T Consensus 247 ~~~~~~ 252 (279)
T 2ihy_A 247 VEDILT 252 (279)
T ss_dssp HHHHCS
T ss_pred HHHHhc
Confidence 999864
No 35
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=2.3e-45 Score=413.59 Aligned_cols=219 Identities=30% Similarity=0.534 Sum_probs=189.4
Q ss_pred CcEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhc
Q 001371 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1091)
Q Consensus 382 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ 461 (1091)
..|+++|++++|++ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+. .|++
T Consensus 13 ~~l~~~~l~~~y~g--~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 88 (355)
T 1z47_A 13 MTIEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKRN 88 (355)
T ss_dssp EEEEEEEEEECCTT--STTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSS
T ss_pred ceEEEEEEEEEEcC--CCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhCc
Confidence 35999999999942 3469999999999999999999999999999999999999999999999999987654 4678
Q ss_pred eeEEeccCccccc-cHHHHhccCCC--CCC----HHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHH
Q 001371 462 IGLVSQEPVLFTG-SIKDNIAYGKD--DAT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1091)
Q Consensus 462 ia~V~Q~~~Lf~~-TIreNI~~g~~--~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialA 534 (1091)
|+||+|++.+|.. |++|||.|+.. ..+ ++++.++++..++.++.++.| .+||||||||++||
T Consensus 89 ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~-----------~~LSGGq~QRvalA 157 (355)
T 1z47_A 89 VGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFP-----------HELSGGQQQRVALA 157 (355)
T ss_dssp EEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHHHHHHH
T ss_pred EEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCc-----------ccCCHHHHHHHHHH
Confidence 9999999999975 99999998631 122 345677778877766544433 57999999999999
Q ss_pred HHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchhhh-ccCeEEEEeCCEEeeecChhHHhcCC
Q 001371 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVEDP 611 (1091)
Q Consensus 535 RAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL~~~~ 611 (1091)
|||+.+|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|+|++.|+++|+.+++
T Consensus 158 rAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p 237 (355)
T 1z47_A 158 RALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKP 237 (355)
T ss_dssp HHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 999999999999999999999999999999988753 799999999999875 59999999999999999999998764
Q ss_pred Cchh
Q 001371 612 EGAY 615 (1091)
Q Consensus 612 ~~~y 615 (1091)
...|
T Consensus 238 ~~~~ 241 (355)
T 1z47_A 238 GTLF 241 (355)
T ss_dssp SSHH
T ss_pred cchH
Confidence 4333
No 36
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.7e-45 Score=416.25 Aligned_cols=217 Identities=35% Similarity=0.549 Sum_probs=187.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhce
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~i 462 (1091)
.|+++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+++.. +++|
T Consensus 3 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 77 (362)
T 2it1_A 3 EIKLENIVKKFG---NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNV 77 (362)
T ss_dssp CEEEEEEEEESS---SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTE
T ss_pred EEEEEeEEEEEC---CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCcE
Confidence 389999999995 34799999999999999999999999999999999999999999999999999887754 5789
Q ss_pred eEEeccCccccc-cHHHHhccCCC--CCC----HHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHH
Q 001371 463 GLVSQEPVLFTG-SIKDNIAYGKD--DAT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1091)
Q Consensus 463 a~V~Q~~~Lf~~-TIreNI~~g~~--~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialAR 535 (1091)
+||+|++.+|.. |++|||.|+.. ..+ ++++.++++..++.++.++. ..+||||||||++|||
T Consensus 78 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~-----------~~~LSGGq~QRvalAr 146 (362)
T 2it1_A 78 GLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRY-----------PWQLSGGQQQRVAIAR 146 (362)
T ss_dssp EEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCC-----------GGGSCHHHHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCC-----------hhhCCHHHHHHHHHHH
Confidence 999999999975 99999998631 122 24566777777665544333 3579999999999999
Q ss_pred HhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchhh-hccCeEEEEeCCEEeeecChhHHhcCCC
Q 001371 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHSKLVEDPE 612 (1091)
Q Consensus 536 All~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i-~~aD~Iivl~~G~Ive~Gt~~eL~~~~~ 612 (1091)
||+++|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+ ..||+|++|++|+|++.|+++|+.+++.
T Consensus 147 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~p~ 226 (362)
T 2it1_A 147 ALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKPK 226 (362)
T ss_dssp HHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCS
T ss_pred HHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence 99999999999999999999999999999988743 79999999999886 4699999999999999999999987644
Q ss_pred chh
Q 001371 613 GAY 615 (1091)
Q Consensus 613 ~~y 615 (1091)
..|
T Consensus 227 ~~~ 229 (362)
T 2it1_A 227 YKF 229 (362)
T ss_dssp BHH
T ss_pred chH
Confidence 444
No 37
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=3.3e-45 Score=393.62 Aligned_cols=208 Identities=32% Similarity=0.486 Sum_probs=179.9
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhcee
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia 463 (1091)
|+++|++++|+ + +|+|+||++++ |+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+ ..|++|+
T Consensus 2 l~~~~l~~~y~---~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~ 73 (240)
T 2onk_A 2 FLKVRAEKRLG---N--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIG 73 (240)
T ss_dssp CEEEEEEEEET---T--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCB
T ss_pred EEEEEEEEEeC---C--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEE
Confidence 68999999995 1 59999999999 999999999999999999999999999999999999987643 3477899
Q ss_pred EEeccCccccc-cHHHHhccCCCCCC----HHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhh
Q 001371 464 LVSQEPVLFTG-SIKDNIAYGKDDAT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1091)
Q Consensus 464 ~V~Q~~~Lf~~-TIreNI~~g~~~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll 538 (1091)
||||++.+|.. |++||+.++..... ++++.++++..++.++ ......+||||||||++|||||+
T Consensus 74 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGqkqRv~lAral~ 142 (240)
T 2onk_A 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHL-----------LDRKPARLSGGERQRVALARALV 142 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTT-----------TTCCGGGSCHHHHHHHHHHHHHT
T ss_pred EEcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHH-----------hcCChhhCCHHHHHHHHHHHHHH
Confidence 99999999986 99999998753221 3445566666555433 22334579999999999999999
Q ss_pred cCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchhhh-ccCeEEEEeCCEEeeecChhHHhcC
Q 001371 539 KDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVED 610 (1091)
Q Consensus 539 ~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL~~~ 610 (1091)
++|++||||||||+||+.+.+.+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++|+.++
T Consensus 143 ~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 217 (240)
T 2onk_A 143 IQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSA 217 (240)
T ss_dssp TCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999999999999988743 899999999999864 5999999999999999999999865
No 38
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=7e-45 Score=392.96 Aligned_cols=207 Identities=23% Similarity=0.350 Sum_probs=187.0
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhcee
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia 463 (1091)
|+++|++|+ ++|+|+||+|++||+++|+||||||||||+++|+|+++|+ |+|.++|.++.+.+...+|++++
T Consensus 5 l~~~~l~~~-------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~ 76 (249)
T 2qi9_C 5 MQLQDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRA 76 (249)
T ss_dssp EEEEEEEET-------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEE
T ss_pred EEEEceEEE-------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEE
Confidence 789999985 4899999999999999999999999999999999999999 99999999999988889999999
Q ss_pred EEeccCccccc-cHHHHhccCCC-CCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCC
Q 001371 464 LVSQEPVLFTG-SIKDNIAYGKD-DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1091)
Q Consensus 464 ~V~Q~~~Lf~~-TIreNI~~g~~-~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~ 541 (1091)
||+|++.+|.. |++||+.++.. ..+++++.++++..++.++. .....+||||||||++|||||+++|
T Consensus 77 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGq~qrv~lAraL~~~p 145 (249)
T 2qi9_C 77 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKL-----------GRSTNQLSGGEWQRVRLAAVVLQIT 145 (249)
T ss_dssp EECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGT-----------TSBGGGCCHHHHHHHHHHHHHHHHC
T ss_pred EECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHh-----------cCChhhCCHHHHHHHHHHHHHHcCC
Confidence 99999998875 99999998742 22467788888888776543 2345689999999999999999999
Q ss_pred C-------EEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhh-hccCeEEEEeCCEEeeecChhHHhc
Q 001371 542 R-------ILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHSKLVE 609 (1091)
Q Consensus 542 ~-------IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i-~~aD~Iivl~~G~Ive~Gt~~eL~~ 609 (1091)
+ +||||||||+||+.+.+.+.+.|+++. +++|+|++||+++.+ ..||+|++|++|++++.|+++++.+
T Consensus 146 ~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 146 PQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222 (249)
T ss_dssp TTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred CcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9 999999999999999999999998874 589999999999998 5699999999999999999999864
No 39
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=7.4e-45 Score=412.53 Aligned_cols=217 Identities=27% Similarity=0.502 Sum_probs=184.3
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhce
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~i 462 (1091)
.|+++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++.+++.. +++|
T Consensus 11 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 85 (372)
T 1v43_A 11 EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNI 85 (372)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTE
T ss_pred eEEEEEEEEEEC---CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hCcE
Confidence 489999999995 34699999999999999999999999999999999999999999999999999887654 5789
Q ss_pred eEEeccCcccc-ccHHHHhccCCCC--CCH----HHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHH
Q 001371 463 GLVSQEPVLFT-GSIKDNIAYGKDD--ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1091)
Q Consensus 463 a~V~Q~~~Lf~-~TIreNI~~g~~~--~~~----~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialAR 535 (1091)
+||+|++.+|. .|++|||.|+... .+. +++.++++..++.++..+.| .+||||||||++|||
T Consensus 86 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----------~~LSGGq~QRvalAr 154 (372)
T 1v43_A 86 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYP-----------AQLSGGQRQRVAVAR 154 (372)
T ss_dssp EEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----------TTCCSSCHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCCh-----------hhCCHHHHHHHHHHH
Confidence 99999999996 4999999998531 222 45677777777766554444 589999999999999
Q ss_pred HhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchhh-hccCeEEEEeCCEEeeecChhHHhcCCC
Q 001371 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHSKLVEDPE 612 (1091)
Q Consensus 536 All~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i-~~aD~Iivl~~G~Ive~Gt~~eL~~~~~ 612 (1091)
||+++|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+ ..||+|++|++|+|++.|+++|+.+++.
T Consensus 155 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~ 234 (372)
T 1v43_A 155 AIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPN 234 (372)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCS
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcc
Confidence 99999999999999999999999999999988643 79999999999887 4699999999999999999999988754
Q ss_pred chh
Q 001371 613 GAY 615 (1091)
Q Consensus 613 ~~y 615 (1091)
..|
T Consensus 235 ~~~ 237 (372)
T 1v43_A 235 SVF 237 (372)
T ss_dssp BHH
T ss_pred cHH
Confidence 444
No 40
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=4.9e-45 Score=410.88 Aligned_cols=215 Identities=29% Similarity=0.497 Sum_probs=188.0
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhcee
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia 463 (1091)
|+++|++++|+ +. +|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+. .|++|+
T Consensus 2 l~~~~l~~~y~---~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig 75 (348)
T 3d31_A 2 IEIESLSRKWK---NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIA 75 (348)
T ss_dssp EEEEEEEEECS---SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCE
T ss_pred EEEEEEEEEEC---CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEE
Confidence 68999999995 34 9999999999999999999999999999999999999999999999999987554 477899
Q ss_pred EEeccCccccc-cHHHHhccCCC---CCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhc
Q 001371 464 LVSQEPVLFTG-SIKDNIAYGKD---DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1091)
Q Consensus 464 ~V~Q~~~Lf~~-TIreNI~~g~~---~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~ 539 (1091)
||+|++.+|.. |++|||.|+.. ...++++.++++..++.++.++. ..+||||||||++|||||++
T Consensus 76 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~-----------~~~LSgGq~QRvalAraL~~ 144 (348)
T 3d31_A 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRN-----------PLTLSGGEQQRVALARALVT 144 (348)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSC-----------GGGSCHHHHHHHHHHHHTTS
T ss_pred EEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCC-----------hhhCCHHHHHHHHHHHHHHc
Confidence 99999999986 99999998631 11236788888888776554433 35799999999999999999
Q ss_pred CCCEEEeeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEccCchhh-hccCeEEEEeCCEEeeecChhHHhcCCCchh
Q 001371 540 DPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615 (1091)
Q Consensus 540 ~~~IliLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i-~~aD~Iivl~~G~Ive~Gt~~eL~~~~~~~y 615 (1091)
+|++||||||||+||+.+.+.+.+.|+++. .++|+|+|||+++.+ ..||+|++|++|+|++.|+++|+.+++...|
T Consensus 145 ~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~p~~~~ 223 (348)
T 3d31_A 145 NPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGR 223 (348)
T ss_dssp CCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCTTH
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCcccHH
Confidence 999999999999999999999999998874 379999999999876 5699999999999999999999987644444
No 41
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=3.7e-45 Score=413.76 Aligned_cols=218 Identities=28% Similarity=0.469 Sum_probs=188.7
Q ss_pred EEEEeEEEECCCCCCCc--cccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCC---hHHH
Q 001371 384 IELRDVYFSYPARPNEQ--IFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ---LQWI 458 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~--vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~---~~~l 458 (1091)
|+++|++++|+ +.+ +|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++.+.+ ....
T Consensus 4 l~i~~l~~~y~---~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~ 80 (353)
T 1oxx_K 4 IIVKNVSKVFK---KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80 (353)
T ss_dssp EEEEEEEEEEG---GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGG
T ss_pred EEEEeEEEEEC---CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChh
Confidence 89999999995 246 999999999999999999999999999999999999999999999999987621 3345
Q ss_pred hhceeEEeccCccccc-cHHHHhccCCCC--CC----HHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHH
Q 001371 459 RKKIGLVSQEPVLFTG-SIKDNIAYGKDD--AT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRI 531 (1091)
Q Consensus 459 r~~ia~V~Q~~~Lf~~-TIreNI~~g~~~--~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRi 531 (1091)
|++|+||+|++.+|.. |++|||.|+... .+ ++++.++++..++.++.++.| .+||||||||+
T Consensus 81 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~-----------~~LSGGq~QRv 149 (353)
T 1oxx_K 81 DRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFP-----------RELSGAQQQRV 149 (353)
T ss_dssp GSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHHHH
T ss_pred hCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHHHH
Confidence 7889999999999975 999999997431 22 345677778777766544433 57999999999
Q ss_pred HHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchhhh-ccCeEEEEeCCEEeeecChhHHh
Q 001371 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLV 608 (1091)
Q Consensus 532 alARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL~ 608 (1091)
+|||||+++|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|+|++.|+++|+.
T Consensus 150 alAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~ 229 (353)
T 1oxx_K 150 ALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLY 229 (353)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999988743 799999999999875 59999999999999999999998
Q ss_pred cCCCchh
Q 001371 609 EDPEGAY 615 (1091)
Q Consensus 609 ~~~~~~y 615 (1091)
+++...|
T Consensus 230 ~~p~~~~ 236 (353)
T 1oxx_K 230 DNPVSIQ 236 (353)
T ss_dssp HSCSSHH
T ss_pred hCcccHH
Confidence 7644444
No 42
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=1.1e-44 Score=412.40 Aligned_cols=216 Identities=27% Similarity=0.491 Sum_probs=187.0
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccC------CChHH
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE------FQLQW 457 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~------~~~~~ 457 (1091)
|+++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++.+ ++.
T Consensus 4 l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~-- 78 (372)
T 1g29_1 4 VRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP-- 78 (372)
T ss_dssp EEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCG--
T ss_pred EEEEeEEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCH--
Confidence 89999999995 3479999999999999999999999999999999999999999999999999876 544
Q ss_pred HhhceeEEeccCcccc-ccHHHHhccCCC--CCC----HHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHH
Q 001371 458 IRKKIGLVSQEPVLFT-GSIKDNIAYGKD--DAT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR 530 (1091)
Q Consensus 458 lr~~ia~V~Q~~~Lf~-~TIreNI~~g~~--~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQR 530 (1091)
.+++|+||+|++.+|. .|++|||.|+.. ..+ ++++.++++..++.++..+. ..+||||||||
T Consensus 79 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~-----------~~~LSGGq~QR 147 (372)
T 1g29_1 79 KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRK-----------PRELSGGQRQR 147 (372)
T ss_dssp GGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCC-----------GGGSCHHHHHH
T ss_pred hHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCC-----------cccCCHHHHHH
Confidence 3678999999999986 599999998631 122 24566777777766554433 35799999999
Q ss_pred HHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchhhh-ccCeEEEEeCCEEeeecChhHH
Q 001371 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKL 607 (1091)
Q Consensus 531 ialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL 607 (1091)
+||||||+.+|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|+|++.|+++|+
T Consensus 148 valArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l 227 (372)
T 1g29_1 148 VALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEV 227 (372)
T ss_dssp HHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999988653 799999999999875 5999999999999999999999
Q ss_pred hcCCCchh
Q 001371 608 VEDPEGAY 615 (1091)
Q Consensus 608 ~~~~~~~y 615 (1091)
..++...|
T Consensus 228 ~~~p~~~~ 235 (372)
T 1g29_1 228 YDKPANTF 235 (372)
T ss_dssp HHSCSBHH
T ss_pred HhCcccHH
Confidence 87654444
No 43
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=6e-45 Score=395.47 Aligned_cols=209 Identities=28% Similarity=0.466 Sum_probs=172.1
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcc--CCCCCcEEEECCccccCCChHHH-hh
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERF--YDPQAGEVLIDGINLKEFQLQWI-RK 460 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~--~~~~~G~I~idg~~i~~~~~~~l-r~ 460 (1091)
|+++|++|+|++ .++|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|.++.+.+.... |.
T Consensus 4 l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (250)
T 2d2e_A 4 LEIRDLWASIDG---ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARK 80 (250)
T ss_dssp EEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHT
T ss_pred EEEEeEEEEECC---EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhC
Confidence 789999999963 4799999999999999999999999999999999998 89999999999999998887665 45
Q ss_pred ceeEEeccCccccc-cHHHHhccCCC-----CCC----HHHHHHHHHHcccH-HHHhhCCCCcccccccCCCC-CChHHH
Q 001371 461 KIGLVSQEPVLFTG-SIKDNIAYGKD-----DAT----TEEIRVATELANAA-KFIDKLPQGIDTLVGEHGTQ-LSGGQK 528 (1091)
Q Consensus 461 ~ia~V~Q~~~Lf~~-TIreNI~~g~~-----~~~----~~~i~~a~~~a~l~-~~i~~lp~G~~T~vge~G~~-LSGGQk 528 (1091)
.++||+|+|.+|.+ |++||+.++.. ... .+++.++++..++. +.. +..+ .+ ||||||
T Consensus 81 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-------~~~~----~~~LSgGqk 149 (250)
T 2d2e_A 81 GLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYL-------SRYL----NEGFSGGEK 149 (250)
T ss_dssp TBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGG-------GSBT----TCC----HH
T ss_pred cEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHh-------cCCc----ccCCCHHHH
Confidence 69999999999886 99999987521 011 23344455554441 211 2222 34 999999
Q ss_pred HHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhhc--cCeEEEEeCCEEeeecChh
Q 001371 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN--ADMIAVIHRGKIVEKGTHS 605 (1091)
Q Consensus 529 QRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~--aD~Iivl~~G~Ive~Gt~~ 605 (1091)
||++|||||+++|+|||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|+++
T Consensus 150 Qrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~ 229 (250)
T 2d2e_A 150 KRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPE 229 (250)
T ss_dssp HHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHH
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHH
Confidence 99999999999999999999999999999999999998875 47899999999999876 5999999999999999987
Q ss_pred H
Q 001371 606 K 606 (1091)
Q Consensus 606 e 606 (1091)
+
T Consensus 230 ~ 230 (250)
T 2d2e_A 230 L 230 (250)
T ss_dssp H
T ss_pred H
Confidence 3
No 44
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=2.4e-43 Score=386.10 Aligned_cols=212 Identities=25% Similarity=0.369 Sum_probs=178.3
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcc--CCCCCcEEEECCccccCCChHHH-h
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERF--YDPQAGEVLIDGINLKEFQLQWI-R 459 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~--~~~~~G~I~idg~~i~~~~~~~l-r 459 (1091)
-|+++|++|+|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|.++.+.+.... |
T Consensus 20 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 96 (267)
T 2zu0_C 20 MLSIKDLHVSVE---DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAG 96 (267)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHH
T ss_pred eEEEEeEEEEEC---CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhh
Confidence 599999999995 35799999999999999999999999999999999999 57999999999999998887665 4
Q ss_pred hceeEEeccCccccc-cHHHHhccCC---------CCCCHH----HHHHHHHHcccHHHHhhCCCCcccccccCC-C-CC
Q 001371 460 KKIGLVSQEPVLFTG-SIKDNIAYGK---------DDATTE----EIRVATELANAAKFIDKLPQGIDTLVGEHG-T-QL 523 (1091)
Q Consensus 460 ~~ia~V~Q~~~Lf~~-TIreNI~~g~---------~~~~~~----~i~~a~~~a~l~~~i~~lp~G~~T~vge~G-~-~L 523 (1091)
..|+||+|+|.+|.+ |++||+.++. +..+.+ ++.++++.. |+++...++. . +|
T Consensus 97 ~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~~~L 165 (267)
T 2zu0_C 97 EGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALL-----------KMPEDLLTRSVNVGF 165 (267)
T ss_dssp HTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHT-----------TCCTTTTTSBTTTTC
T ss_pred CCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHc-----------CCChhHhcCCcccCC
Confidence 569999999999876 8999986531 112322 233333333 3333333333 2 59
Q ss_pred ChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhhc--cCeEEEEeCCEEee
Q 001371 524 SGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN--ADMIAVIHRGKIVE 600 (1091)
Q Consensus 524 SGGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~--aD~Iivl~~G~Ive 600 (1091)
|||||||++|||||+++|+|||||||||+||+.+.+.+.+.|+++. +++|+|+|||++..+.. ||+|++|++|+|++
T Consensus 166 SgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~ 245 (267)
T 2zu0_C 166 SGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVK 245 (267)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEE
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999998874 47899999999999875 89999999999999
Q ss_pred ecChhHHh
Q 001371 601 KGTHSKLV 608 (1091)
Q Consensus 601 ~Gt~~eL~ 608 (1091)
.|+++++.
T Consensus 246 ~g~~~~~~ 253 (267)
T 2zu0_C 246 SGDFTLVK 253 (267)
T ss_dssp EECTTHHH
T ss_pred EcCHHHHh
Confidence 99998764
No 45
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=8e-44 Score=387.50 Aligned_cols=209 Identities=17% Similarity=0.301 Sum_probs=181.3
Q ss_pred EEEEeEEEECCCC-CCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhce
Q 001371 384 IELRDVYFSYPAR-PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1091)
Q Consensus 384 I~~~~vsf~Y~~~-~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~i 462 (1091)
|+++|++++|++. ..+++|+|+||+|+ |++++|+||||||||||+++|+|++ |++|+|.++|.++.+. .. |++|
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~i 76 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIRY 76 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTTE
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhhe
Confidence 6899999999631 01479999999999 9999999999999999999999999 9999999999998765 33 7889
Q ss_pred e-EEeccCccccccHHHHhccCCC--CCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhc
Q 001371 463 G-LVSQEPVLFTGSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1091)
Q Consensus 463 a-~V~Q~~~Lf~~TIreNI~~g~~--~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~ 539 (1091)
+ ||||+|.+ +.|++||+.++.+ ..+++++.++++..++.+ ........+||||||||++|||||++
T Consensus 77 ~~~v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~----------~~~~~~~~~LSgGqkqRv~lAraL~~ 145 (263)
T 2pjz_A 77 STNLPEAYEI-GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGE----------EILRRKLYKLSAGQSVLVRTSLALAS 145 (263)
T ss_dssp EECCGGGSCT-TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCG----------GGGGSBGGGSCHHHHHHHHHHHHHHT
T ss_pred EEEeCCCCcc-CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCCh----------hHhcCChhhCCHHHHHHHHHHHHHHh
Confidence 9 99999999 9999999988632 345666777766665430 33455567899999999999999999
Q ss_pred CCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhh-ccC-eEEEEeCCEEeeecChhHHhcC
Q 001371 540 DPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NAD-MIAVIHRGKIVEKGTHSKLVED 610 (1091)
Q Consensus 540 ~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~-~aD-~Iivl~~G~Ive~Gt~~eL~~~ 610 (1091)
+|++||||||||+||+.+.+.+.+.|+++.+ |+|+|||+++.+. .|| +|++|++|++++.|+++|+.+.
T Consensus 146 ~p~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~~ 216 (263)
T 2pjz_A 146 QPEIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLES 216 (263)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHTE
T ss_pred CCCEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHhh
Confidence 9999999999999999999999999988654 9999999999875 699 9999999999999999998753
No 46
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=1.1e-43 Score=385.19 Aligned_cols=199 Identities=28% Similarity=0.411 Sum_probs=173.1
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhcee
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia 463 (1091)
|+++|++++|+. +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|. +|++|+
T Consensus 5 l~i~~l~~~y~~--~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------------~~~~i~ 69 (253)
T 2nq2_C 5 LSVENLGFYYQA--ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-------------VYQSIG 69 (253)
T ss_dssp EEEEEEEEEETT--TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-------------ECSCEE
T ss_pred EEEeeEEEEeCC--CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-------------EeccEE
Confidence 899999999962 24799999999999999999999999999999999999999999998 355899
Q ss_pred EEeccCccc-cccHHHHhccCCCC-------CC---HHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHH
Q 001371 464 LVSQEPVLF-TGSIKDNIAYGKDD-------AT---TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIA 532 (1091)
Q Consensus 464 ~V~Q~~~Lf-~~TIreNI~~g~~~-------~~---~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRia 532 (1091)
||||+|.+| +.|++|||.++... .. ++++.++++..++.++. .....+||||||||++
T Consensus 70 ~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGq~qrv~ 138 (253)
T 2nq2_C 70 FVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLA-----------KREFTSLSGGQRQLIL 138 (253)
T ss_dssp EECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGT-----------TSBGGGSCHHHHHHHH
T ss_pred EEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHh-----------cCChhhCCHHHHHHHH
Confidence 999999887 67999999986410 11 24566777777665443 2345689999999999
Q ss_pred HHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchhh-hccCeEEEEeCCEEeeecChhHHhc
Q 001371 533 IARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHSKLVE 609 (1091)
Q Consensus 533 lARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i-~~aD~Iivl~~G~Ive~Gt~~eL~~ 609 (1091)
|||||+++|+|||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+ ..||+|++|++|+ ++.|+++++.+
T Consensus 139 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~~ 217 (253)
T 2nq2_C 139 IARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNILT 217 (253)
T ss_dssp HHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHCC
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHhC
Confidence 99999999999999999999999999999999988753 79999999999988 5699999999999 99999999864
No 47
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=7.7e-43 Score=367.76 Aligned_cols=196 Identities=22% Similarity=0.369 Sum_probs=166.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhce
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~i 462 (1091)
.|+++|++++|+ + ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|++|
T Consensus 10 ~l~~~~ls~~y~---~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~i 80 (214)
T 1sgw_A 10 KLEIRDLSVGYD---K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKI 80 (214)
T ss_dssp EEEEEEEEEESS---S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGE
T ss_pred eEEEEEEEEEeC---C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCcE
Confidence 599999999995 3 7999999999999999999999999999999999999999999999999886 368899
Q ss_pred eEEeccCccccc-cHHHHhccCCC----CCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHh
Q 001371 463 GLVSQEPVLFTG-SIKDNIAYGKD----DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1091)
Q Consensus 463 a~V~Q~~~Lf~~-TIreNI~~g~~----~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAl 537 (1091)
+||||+|.+|.+ |++|||.++.. ..+++++.++++..+ ++.. ..+..+||||||||++|||||
T Consensus 81 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~g-----------l~~~-~~~~~~LSgGqkqrv~laraL 148 (214)
T 1sgw_A 81 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVE-----------VLDL-KKKLGELSQGTIRRVQLASTL 148 (214)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTT-----------CCCT-TSBGGGSCHHHHHHHHHHHHT
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcC-----------CCcC-CCChhhCCHHHHHHHHHHHHH
Confidence 999999999986 99999987521 123556666666554 3334 556678999999999999999
Q ss_pred hcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhhccCeEEEEeCCEEe
Q 001371 538 LKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIAVIHRGKIV 599 (1091)
Q Consensus 538 l~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~aD~Iivl~~G~Iv 599 (1091)
+++|++||||||||+||+.+.+.+.+.|+++. +++|+|++||+++.+..++..+++.+|+|-
T Consensus 149 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~~~~~~~ 211 (214)
T 1sgw_A 149 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHKYSTKID 211 (214)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGGGBC---
T ss_pred HhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEeCCccc
Confidence 99999999999999999999999999998865 478999999999998874444456667763
No 48
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=3.4e-35 Score=357.50 Aligned_cols=368 Identities=15% Similarity=0.176 Sum_probs=294.9
Q ss_pred CChhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 715 KPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQ 794 (1091)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~i~~~~~~~~~~~~~~~~s~ 794 (1091)
++.+..+++++++.++.++......+++..+++....... ......+...+++++++..++.+++.++..+.+.+...
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (587)
T 3qf4_A 19 KPYWIFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGD--FSLVLKTGILMLIVALIGAVGGIGCTVFASYASQNFGA 96 (587)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666777788888876543221 11223345566667777788888888999999999999
Q ss_pred HHHHHHHHHHHhCccccccCCCCChhhHHhHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 001371 795 RIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLP 874 (1091)
Q Consensus 795 ~Lh~~~~~~vl~~p~sFFD~~~tp~GrilnRfs~D~~~id~~l~~~l~~~~~~~~~~~~~~i~~~~~~w~l~l~~i~~~p 874 (1091)
++|.++|+++++.|++||+ .+++|+++||+++|++.+++.+...+..++...+.+++++++.+..+|++++++++++|
T Consensus 97 ~lr~~l~~~ll~~~~~~~~--~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~~l~~~~ 174 (587)
T 3qf4_A 97 DLRRDLFRKVLSFSISNVN--RFHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIFLIP 174 (587)
T ss_dssp HHHHHHHHHHHHCCHHHHH--HSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHc--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 67899999999999999999999999999999998998898889999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHhHHHHHHccchHhhhccchHHHHHHHHHHhhhhHHhhHHHHHHHHHHHHHHH
Q 001371 875 LIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASF 954 (1091)
Q Consensus 875 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gl~TIra~~~e~~f~~~~~~~l~~~~~~~~r~~~~~~~~~g~~~ 954 (1091)
++++..++..+..+...+..+.........+.|++.|++|||+|++|+++.++|.+..+...+...+.....+...++..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (587)
T 3qf4_A 175 PIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLIVFALPLFI 254 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887777666666666666666777788899999999999999999999999999988888877777777777777777
Q ss_pred HHHHHHHHHHHHHhhHhhccCCcCHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCC
Q 001371 955 FLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGT 1034 (1091)
Q Consensus 955 ~~~~~~~a~~~~~g~~li~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~i~~~i~~~~~~~~~~~~~~ 1034 (1091)
.+.....++.+|+|..++..|.++.+.++............+............+..++.++.++++.+++.+.... +.
T Consensus 255 ~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~-~~ 333 (587)
T 3qf4_A 255 FIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIEEADN-AL 333 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCCCTT-CB
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCC-cc
Confidence 77777778889999999999999988877766555554555555555567788888999999999987654432221 11
Q ss_pred cccccceeEEEeeeeeeCCCCCCCccccccceeeeCCCEEEEEcCCCCCccccc
Q 001371 1035 ILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKVSAKLNFQFHSLKQLT 1088 (1091)
Q Consensus 1035 ~~~~~~G~I~f~nVs~~Y~~rp~~~VLk~is~~I~~Ge~valVG~SG~~~~~~~ 1088 (1091)
..++.+|.|+|+||+|+|+++ +.+||+|+||+|++||++|||||||||||||-
T Consensus 334 ~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll 386 (587)
T 3qf4_A 334 ALPNVEGSVSFENVEFRYFEN-TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLM 386 (587)
T ss_dssp CCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEECSSSSSHHHHH
T ss_pred ccCCCCCcEEEEEEEEEcCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHH
Confidence 223457999999999999743 34699999999999999999999999999974
No 49
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=9.2e-35 Score=354.86 Aligned_cols=367 Identities=20% Similarity=0.246 Sum_probs=296.2
Q ss_pred CCChhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 714 NKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLI 793 (1091)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~i~~~~~~~~~~~~~~~~s 793 (1091)
..+.+..+++++++.++.++......+++..+++....... ......|..+++++.++..++.+++.++....+.+..
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (598)
T 3qf4_B 32 LRPHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRR--FDLLPRYMLILGTIYALTSLLFWLQGKIMLTLSQDVV 109 (598)
T ss_dssp TGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTC--GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666666667777777776543221 1223456777888888888899999999999999999
Q ss_pred HHHHHHHHHHHHhCccccccCCCCChhhHHhHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001371 794 QRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVML 873 (1091)
Q Consensus 794 ~~Lh~~~~~~vl~~p~sFFD~~~tp~GrilnRfs~D~~~id~~l~~~l~~~~~~~~~~~~~~i~~~~~~w~l~l~~i~~~ 873 (1091)
.++|.++|+++++.|++||| .+++|+++||+++|++.+++.++..+..++..++.+++++++++..+|++++++++++
T Consensus 110 ~~lr~~l~~~ll~~~~~~~~--~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~~l~~~ 187 (598)
T 3qf4_B 110 FRLRKELFEKLQRVPVGFFD--RTPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIV 187 (598)
T ss_dssp HHHHHHHHHHHHHSCTHHHH--HSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHCCCHHHHc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 6889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhHHHHHHccchHhhhccchHHHHHHHHHHhhhhHHhhHHHHHHHHHHHHHH
Q 001371 874 PLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGAS 953 (1091)
Q Consensus 874 pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gl~TIra~~~e~~f~~~~~~~l~~~~~~~~r~~~~~~~~~g~~ 953 (1091)
|++++..++..+..+...+..+.........+.|++.|++|||+|++|+++.++|.+..+...+...+.....+...++.
T Consensus 188 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (598)
T 3qf4_B 188 PLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLM 267 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888777777766666666666666777889999999999999999999999999998888888888777777777777
Q ss_pred HHHHHHHHHHHHHHhhHhhccCCcCHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHcCCCCCCCCCCCC
Q 001371 954 FFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESG 1033 (1091)
Q Consensus 954 ~~~~~~~~a~~~~~g~~li~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~i~~~i~~~~~~~~~~~~~ 1033 (1091)
..+....+++.+|+|..++..|.++.+.++............+............+..++.++.++++.+++.+.+. +
T Consensus 268 ~~~~~~~~~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~--~ 345 (598)
T 3qf4_B 268 NMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKDDPD--A 345 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCSS--C
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC--C
Confidence 77777777888999999999999998876655443333344455555666778888999999999988765443221 1
Q ss_pred CcccccceeEEEeeeeeeCCCCCCCccccccceeeeCCCEEEEEcCCCCCccccc
Q 001371 1034 TILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKVSAKLNFQFHSLKQLT 1088 (1091)
Q Consensus 1034 ~~~~~~~G~I~f~nVs~~Y~~rp~~~VLk~is~~I~~Ge~valVG~SG~~~~~~~ 1088 (1091)
...++.+|.|+|+||+|+|++ +.+||+|+||+|++||++|||||||||||||-
T Consensus 346 ~~~~~~~~~i~~~~v~~~y~~--~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll 398 (598)
T 3qf4_B 346 VELREVRGEIEFKNVWFSYDK--KKPVLKDITFHIKPGQKVALVGPTGSGKTTIV 398 (598)
T ss_dssp CCCCSCCCCEEEEEEECCSSS--SSCSCCSEEEECCTTCEEEEECCTTSSTTHHH
T ss_pred CCCCCCCCeEEEEEEEEECCC--CCccccceEEEEcCCCEEEEECCCCCcHHHHH
Confidence 223445799999999999964 33699999999999999999999999999974
No 50
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=5.9e-34 Score=348.17 Aligned_cols=370 Identities=22% Similarity=0.354 Sum_probs=288.4
Q ss_pred ChhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCch-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 716 PEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPH-ELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQ 794 (1091)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~y~~l~~~~~i~~~~~~~~~~~~~~~~s~ 794 (1091)
+.+..+++++++.++.+...+...+++..+++....... ........+...++++.++..++.+++.++....+.+...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (595)
T 2yl4_A 16 PERRRLAAAVGFLTMSSVISMSAPFFLGKIIDVIYTNPTVDYSDNLTRLCLGLSAVFLCGAAANAIRVYLMQTSGQRIVN 95 (595)
T ss_dssp GGHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555555555555556656554321110 0001122344556666677777888888889999999999
Q ss_pred HHHHHHHHHHHhCccccccCCCCChhhHHhHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 001371 795 RIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLP 874 (1091)
Q Consensus 795 ~Lh~~~~~~vl~~p~sFFD~~~tp~GrilnRfs~D~~~id~~l~~~l~~~~~~~~~~~~~~i~~~~~~w~l~l~~i~~~p 874 (1091)
++|.++|+++++.|++||| .+++|+++||+++|++.++..+...+..++..++.+++.+++++.++|++++++++++|
T Consensus 96 ~lr~~l~~~l~~~~~~~~~--~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~ 173 (595)
T 2yl4_A 96 RLRTSLFSSILRQEVAFFD--KTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVP 173 (595)
T ss_dssp HHHHHHHHHHHHSCHHHHH--HSCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHC--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 9999999999999999999 67899999999999999999999999999999999999999999999999999998889
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHhHHHHHHccchHhhhccchHHHHHHHHHHhhhhHHhhHHHHHHHHHHHHHHH
Q 001371 875 LIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASF 954 (1091)
Q Consensus 875 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gl~TIra~~~e~~f~~~~~~~l~~~~~~~~r~~~~~~~~~g~~~ 954 (1091)
++++..++..+..+...+..+.........+.|++.|+++||+|++|+++.++|.+..+...+...+.....+...++..
T Consensus 174 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (595)
T 2yl4_A 174 PVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGATG 253 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877766666666666666666667778899999999999999999999999999998888888888777777777777
Q ss_pred HHHHHHHHHHHHHhhHhhccCCcCHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCC
Q 001371 955 FLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGT 1034 (1091)
Q Consensus 955 ~~~~~~~a~~~~~g~~li~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~i~~~i~~~~~~~~~~~~~~ 1034 (1091)
.+.....++.+|+|..++..|.++.++++............+............+..++.++.++++.+++.+.... ..
T Consensus 254 ~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~-~~ 332 (595)
T 2yl4_A 254 LSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREPKLPFNEG-VI 332 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCSSCS-BC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCC-CC
Confidence 76667777888999999999999998877666555555555666666677888888999999999986654332111 11
Q ss_pred ccccccee-EEEeeeeeeCCCCCCCccccccceeeeCCCEEEEEcCCCCCccccc
Q 001371 1035 ILEDVKGE-IELHHVSFKYPSRPDVQVFRDLNLKIRAGKVSAKLNFQFHSLKQLT 1088 (1091)
Q Consensus 1035 ~~~~~~G~-I~f~nVs~~Y~~rp~~~VLk~is~~I~~Ge~valVG~SG~~~~~~~ 1088 (1091)
++++..|. |+|+||+|+|+++++.+||+|+||+|++||++|||||||||||||-
T Consensus 333 ~~~~~~~~~i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl 387 (595)
T 2yl4_A 333 LNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVL 387 (595)
T ss_dssp CCTTTCCCCEEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHH
T ss_pred CCcCCCCCeEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHH
Confidence 11234688 9999999999865545699999999999999999999999999974
No 51
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=100.00 E-value=1.1e-40 Score=367.70 Aligned_cols=236 Identities=17% Similarity=0.243 Sum_probs=189.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcCCCCCcccCCCCCcEEEEeEEEECCCC
Q 001371 317 GYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPAR 396 (1091)
Q Consensus 317 ~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~ 396 (1091)
..+-+...+++.+... ..++..+...+..++++..+..|+.++++.+++..... .. .....+.|+++||+|+|+
T Consensus 39 ~~~~~n~~afl~~~~q-~~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~--~~-~~~~~~~i~~~~vs~~y~-- 112 (305)
T 2v9p_A 39 AGSDSNARAFLATNSQ-AKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGE--GS-WKSILTFFNYQNIELITF-- 112 (305)
T ss_dssp TTTCHHHHHHTTCTTH-HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCCSS--CC-THHHHHHHHHTTCCHHHH--
T ss_pred cCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCC--Cc-ccccCCeEEEEEEEEEcC--
Confidence 3444555555544333 35677777788888999999999999987654322111 11 111123589999999995
Q ss_pred CCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhceeEEeccCccccccH
Q 001371 397 PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSI 476 (1091)
Q Consensus 397 ~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TI 476 (1091)
.++|+|+||+|++|+++|||||||||||||+++|+|++ +|+| ++||+|+|++|++|+
T Consensus 113 --~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I------------------~~~v~q~~~lf~~ti 169 (305)
T 2v9p_A 113 --INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV------------------LSFANHKSHFWLASL 169 (305)
T ss_dssp --HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE------------------ECGGGTTSGGGGGGG
T ss_pred --hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE------------------EEEecCccccccccH
Confidence 37999999999999999999999999999999999999 8988 568999999999999
Q ss_pred HH-HhccCCCCCCHHHHHHHHHHcccHHHHhh-CCCCcccccccCCCCCChHHHHHHHHHHHhhcCCCEEEeeCCCCCCC
Q 001371 477 KD-NIAYGKDDATTEEIRVATELANAAKFIDK-LPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD 554 (1091)
Q Consensus 477 re-NI~~g~~~~~~~~i~~a~~~a~l~~~i~~-lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~IliLDE~tSaLD 554 (1091)
+| ||.|+ ++.++ +++++++. ||+|+| |.+|||||||| |||++++|+||| ||+||
T Consensus 170 ~~~ni~~~-~~~~~----------~~~~~i~~~L~~gld------g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD 225 (305)
T 2v9p_A 170 ADTRAALV-DDATH----------ACWRYFDTYLRNALD------GYPVSIDRKHK---AAVQIKAPPLLV----TSNID 225 (305)
T ss_dssp TTCSCEEE-EEECH----------HHHHHHHHTTTGGGG------TCCEECCCSSC---CCCEECCCCEEE----EESSC
T ss_pred HHHhhccC-ccccH----------HHHHHHHHHhHccCC------ccCcCHHHHHH---HHHHhCCCCEEE----ECCCC
Confidence 98 99997 44553 34677888 999998 78999999999 999999999999 99999
Q ss_pred HHhHHHHHHHHHHHcCCCeEEEEccCchhhhccCeEEEEeCCEEeeecChhHHhcCCCchhHHHHHHHh
Q 001371 555 AESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQE 623 (1091)
Q Consensus 555 ~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~~~~~~~y~~l~~~~~ 623 (1091)
+++++.|.. +|||+++++.||+| +|++|+|++.|+|+|| ++.|++++..+.
T Consensus 226 ~~~~~~i~~-------------ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el----~~~y~~l~~~~~ 276 (305)
T 2v9p_A 226 VQAEDRYLY-------------LHSRVQTFRFEQPC-TDESGEQPFNITDADW----KSFFVRLWGRLD 276 (305)
T ss_dssp STTCGGGGG-------------GTTTEEEEECCCCC-CCC---CCCCCCHHHH----HHHHHHSTTTTT
T ss_pred HHHHHHHHH-------------HhCCHHHHHhCCEE-EEeCCEEEEeCCHHHH----HHHHHHHHHHcc
Confidence 999988852 39999999999999 9999999999999999 478888876544
No 52
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=2.9e-33 Score=341.16 Aligned_cols=362 Identities=18% Similarity=0.232 Sum_probs=289.6
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCchhhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 718 IPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWA-LIYLALGAGSFLLSPAQSYFFAVAGNKLIQRI 796 (1091)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~y~~l~~~~~i~~~~~~~~~~~~~~~~s~~L 796 (1091)
+..+++++++.++.++..+...+++..+++........ ....|. ..+++++++..++.+++.++....+.+...++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 100 (582)
T 3b5x_A 24 KAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAES---NFLRILPFMILGLMFVRGLSGFASSYCLSWVSGNVVMQM 100 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555566666666654321111 112233 34666777788888888899999999999999
Q ss_pred HHHHHHHHHhCccccccCCCCChhhHHhHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 001371 797 RSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLI 876 (1091)
Q Consensus 797 h~~~~~~vl~~p~sFFD~~~tp~GrilnRfs~D~~~id~~l~~~l~~~~~~~~~~~~~~i~~~~~~w~l~l~~i~~~pl~ 876 (1091)
|.++|+++++.|++||| .+++|+++||+++|++.++..+...+..++..++.+++.+++++..+|++++++++++|++
T Consensus 101 r~~l~~~ll~~~~~~~~--~~~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~ 178 (582)
T 3b5x_A 101 RRRLFNHFMHMPVRFFD--QESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVV 178 (582)
T ss_pred HHHHHHHHHcCCHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 99999999999999999 6789999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHhHHHHHHccchHhhhccchHHHHHHHHHHhhhhHHhhHHHHHHHHHHHHHHHHH
Q 001371 877 GVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFL 956 (1091)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gl~TIra~~~e~~f~~~~~~~l~~~~~~~~r~~~~~~~~~g~~~~~ 956 (1091)
++..++..+..+...+..+.........+.|.+.|+++||+|++|+++.++|.+..+...+...+.....+...++...+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (582)
T 3b5x_A 179 AFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMI 258 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87776666666656666666666677889999999999999999999999999999998888888888877777777777
Q ss_pred HHHHHHHHHHHhhHhhccCCcCHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCCcc
Q 001371 957 LFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTIL 1036 (1091)
Q Consensus 957 ~~~~~a~~~~~g~~li~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~i~~~i~~~~~~~~~~~~~~~~ 1036 (1091)
.....++.+|+|+.++..|.++.++++............+............+..++.++.++++.+++.+.. +.+.
T Consensus 259 ~~~~~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~---~~~~ 335 (582)
T 3b5x_A 259 ASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERDNG---KYEA 335 (582)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCC---CCCC
Confidence 7777788899999999999999988877766666666666777777788889999999999998865543211 1112
Q ss_pred cccceeEEEeeeeeeCCCCCCCccccccceeeeCCCEEEEEcCCCCCccccc
Q 001371 1037 EDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKVSAKLNFQFHSLKQLT 1088 (1091)
Q Consensus 1037 ~~~~G~I~f~nVs~~Y~~rp~~~VLk~is~~I~~Ge~valVG~SG~~~~~~~ 1088 (1091)
++..|.|+|+||+|+|++++ .+||+|+||+|++||++|||||||||||||-
T Consensus 336 ~~~~~~i~~~~v~~~y~~~~-~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll 386 (582)
T 3b5x_A 336 ERVNGEVDVKDVTFTYQGKE-KPALSHVSFSIPQGKTVALVGRSGSGKSTIA 386 (582)
T ss_pred CCCCCeEEEEEEEEEcCCCC-ccccccceEEECCCCEEEEECCCCCCHHHHH
Confidence 23468999999999997432 3699999999999999999999999999974
No 53
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=8e-34 Score=345.54 Aligned_cols=369 Identities=17% Similarity=0.208 Sum_probs=289.7
Q ss_pred ChhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCchh-hhhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 716 PEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHE-LKKDS----RFWALIYLALGAGSFLLSPAQSYFFAVAGN 790 (1091)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~y~~l~~~~~i~~~~~~~~~~~~~~ 790 (1091)
+.+..+++++++.++..+......+.+...++........ ..... ..+...+++++++..++.+++.++..+.+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (578)
T 4a82_A 11 PYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYLAQWTSN 90 (578)
T ss_dssp GGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555666665555555556666666655432110 01111 223445555666677778888899999999
Q ss_pred HHHHHHHHHHHHHHHhCccccccCCCCChhhHHhHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001371 791 KLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIIL 870 (1091)
Q Consensus 791 ~~s~~Lh~~~~~~vl~~p~sFFD~~~tp~GrilnRfs~D~~~id~~l~~~l~~~~~~~~~~~~~~i~~~~~~w~l~l~~i 870 (1091)
+...++|.++|+++++.|++||| .+++|+++||+++|++.+++.+...+..++..++.+++++++++..+|+++++++
T Consensus 91 ~~~~~lr~~l~~~ll~~~~~~~~--~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~~l 168 (578)
T 4a82_A 91 KILYDIRKKLYNHLQALSARFYA--NNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAAL 168 (578)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHH--TSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCTTTHHHHT
T ss_pred HHHHHHHHHHHHHHHCCCHHHHc--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 99999999999999999999999 6789999999999999999999888888888888888888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhHHHHHHccchHhhhccchHHHHHHHHHHhhhhHHhhHHHHHHHHHHH
Q 001371 871 VMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGF 950 (1091)
Q Consensus 871 ~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gl~TIra~~~e~~f~~~~~~~l~~~~~~~~r~~~~~~~~~ 950 (1091)
+++|++++..++..+..+...+..+.........+.|++.|+++||+|++|+++.++|.+..+...+...+.....+...
T Consensus 169 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (578)
T 4a82_A 169 FIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSF 248 (578)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888877777766666666666777778889999999999999999999999999998888888788777777777
Q ss_pred HHHHHHHHHHHHHHHHHhhHhhccCCcCHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHcCCCCCCCCC
Q 001371 951 GASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSD 1030 (1091)
Q Consensus 951 g~~~~~~~~~~a~~~~~g~~li~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~i~~~i~~~~~~~~~~ 1030 (1091)
++...+.....++.+|+|..++..|.++.+.++............+............+..++.+++++++.+++.+...
T Consensus 249 ~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~ 328 (578)
T 4a82_A 249 AAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNGV 328 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCC
Confidence 77777777777888999999999999998887766555444444555566667788888999999999998765543222
Q ss_pred CCCCcccccceeEEEeeeeeeCCCCCCCccccccceeeeCCCEEEEEcCCCCCccccc
Q 001371 1031 ESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKVSAKLNFQFHSLKQLT 1088 (1091)
Q Consensus 1031 ~~~~~~~~~~G~I~f~nVs~~Y~~rp~~~VLk~is~~I~~Ge~valVG~SG~~~~~~~ 1088 (1091)
. +...++.+|.|+|+||+|+|+++ +.+||+|+||+|++||++|||||||||||||-
T Consensus 329 ~-~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll 384 (578)
T 4a82_A 329 G-AQPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLI 384 (578)
T ss_dssp T-CCCCCCCSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHH
T ss_pred C-ccccCCCCCeEEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCChHHHHH
Confidence 1 11223457999999999999753 34699999999999999999999999999974
No 54
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=3.6e-33 Score=340.33 Aligned_cols=363 Identities=21% Similarity=0.303 Sum_probs=288.9
Q ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCchhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 717 EIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFW-ALIYLALGAGSFLLSPAQSYFFAVAGNKLIQR 795 (1091)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~y~~l~~~~~i~~~~~~~~~~~~~~~~s~~ 795 (1091)
.+..+++++++.++.+.......+++..+++....... . ....| ...+++++++..++.+++.+.....+.+...+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (582)
T 3b60_A 23 FKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTD-R--SVLLWMPLVVIGLMILRGITSYISSYCISWVSGKVVMT 99 (582)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTT-H--HHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-h--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555666655555556666666665432111 1 11222 23466667777888888889999999999999
Q ss_pred HHHHHHHHHHhCccccccCCCCChhhHHhHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 001371 796 IRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPL 875 (1091)
Q Consensus 796 Lh~~~~~~vl~~p~sFFD~~~tp~GrilnRfs~D~~~id~~l~~~l~~~~~~~~~~~~~~i~~~~~~w~l~l~~i~~~pl 875 (1091)
+|.++|+++++.|++||| .+++|+++||+++|++.++..+...+..++..++.+++.+++++.++|++++++++++|+
T Consensus 100 lr~~l~~~l~~~~~~~~~--~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l 177 (582)
T 3b60_A 100 MRRRLFGHMMGMPVAFFD--KQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPI 177 (582)
T ss_dssp HHHHHHHHHHTCCSTHHH--HSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999999 678999999999999999999999999999999999999999999999999999988898
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHhHHHHHHccchHhhhccchHHHHHHHHHHhhhhHHhhHHHHHHHHHHHHHHHH
Q 001371 876 IGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFF 955 (1091)
Q Consensus 876 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gl~TIra~~~e~~f~~~~~~~l~~~~~~~~r~~~~~~~~~g~~~~ 955 (1091)
+++..++..+..+...+..+.........+.|++.|+++||+|++|+++.++|.+..+...+...+.....+...++...
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (582)
T 3b60_A 178 VSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQL 257 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777666666666666666666677788999999999999999999999999999998888888888777777777777
Q ss_pred HHHHHHHHHHHHhhHhhccCCcCHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCCc
Q 001371 956 LLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTI 1035 (1091)
Q Consensus 956 ~~~~~~a~~~~~g~~li~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~i~~~i~~~~~~~~~~~~~~~ 1035 (1091)
+.....++.+|+|+.++..|.++.++++............+............+..++.++.++++.+++.+.. +..
T Consensus 258 ~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~---~~~ 334 (582)
T 3b60_A 258 IASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDEG---KRV 334 (582)
T ss_dssp HHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCCCC---CBC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCC---CCC
Confidence 77777778889999999999998888777666655556666666677788888999999999998865543221 111
Q ss_pred ccccceeEEEeeeeeeCCCCCCCccccccceeeeCCCEEEEEcCCCCCccccc
Q 001371 1036 LEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKVSAKLNFQFHSLKQLT 1088 (1091)
Q Consensus 1036 ~~~~~G~I~f~nVs~~Y~~rp~~~VLk~is~~I~~Ge~valVG~SG~~~~~~~ 1088 (1091)
.++..|.|+|+||+|+|+++ +.+||+|+||+|++||++|||||||||||||-
T Consensus 335 ~~~~~~~i~~~~v~~~y~~~-~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl 386 (582)
T 3b60_A 335 IDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIA 386 (582)
T ss_dssp CSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHH
T ss_pred CCCCCCcEEEEEEEEEcCCC-CCccccceeEEEcCCCEEEEECCCCCCHHHHH
Confidence 23346899999999999743 23699999999999999999999999999974
No 55
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=3.8e-34 Score=356.04 Aligned_cols=198 Identities=23% Similarity=0.389 Sum_probs=152.6
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhce
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~i 462 (1091)
-|+++|++|+|+++ ++++|+|+||+|++|+++||+||+|||||||+++|.|+++|++|+|.++|. .+|
T Consensus 671 mL~v~nLs~~Y~g~-~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~-----------~~I 738 (986)
T 2iw3_A 671 IVKVTNMEFQYPGT-SKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN-----------CRI 738 (986)
T ss_dssp EEEEEEEEECCTTC-SSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT-----------CCE
T ss_pred eEEEEeeEEEeCCC-CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc-----------cce
Confidence 38999999999742 357999999999999999999999999999999999999999999999872 147
Q ss_pred eEEeccCcc-----cccc--------------------------------------------------------------
Q 001371 463 GLVSQEPVL-----FTGS-------------------------------------------------------------- 475 (1091)
Q Consensus 463 a~V~Q~~~L-----f~~T-------------------------------------------------------------- 475 (1091)
+||+|++.. .+.|
T Consensus 739 ~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e 818 (986)
T 2iw3_A 739 AYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYE 818 (986)
T ss_dssp EEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEE
T ss_pred EeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhh
Confidence 777776521 1223
Q ss_pred ----HHHHhccCCC-----------------------------------------CCCHHHHHHHHHHcccHHHHhhCCC
Q 001371 476 ----IKDNIAYGKD-----------------------------------------DATTEEIRVATELANAAKFIDKLPQ 510 (1091)
Q Consensus 476 ----IreNI~~g~~-----------------------------------------~~~~~~i~~a~~~a~l~~~i~~lp~ 510 (1091)
++|||.++.+ ...++++.++++..++.+.+.
T Consensus 819 ~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~---- 894 (986)
T 2iw3_A 819 CSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIV---- 894 (986)
T ss_dssp EEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHH----
T ss_pred hhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhh----
Confidence 3344433211 011233444444444432110
Q ss_pred CcccccccCCCCCChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhh-ccCe
Q 001371 511 GIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADM 589 (1091)
Q Consensus 511 G~~T~vge~G~~LSGGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~-~aD~ 589 (1091)
......+||||||||++|||||+.+|+||||||||++||+.+...+.+.|+++ ++|+|+|||+++.+. .||+
T Consensus 895 -----~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~--g~tVIiISHD~e~v~~l~Dr 967 (986)
T 2iw3_A 895 -----SHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITHSAEFTKNLTEE 967 (986)
T ss_dssp -----HHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC--SSEEEEECSCHHHHTTTCCE
T ss_pred -----cCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh--CCEEEEEECCHHHHHHhCCE
Confidence 12345689999999999999999999999999999999999999999999775 579999999999985 5999
Q ss_pred EEEEeCCEEeeecC
Q 001371 590 IAVIHRGKIVEKGT 603 (1091)
Q Consensus 590 Iivl~~G~Ive~Gt 603 (1091)
|++|++|+|++.|+
T Consensus 968 VivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 968 VWAVKDGRMTPSGH 981 (986)
T ss_dssp EECCBTTBCCC---
T ss_pred EEEEECCEEEEeCC
Confidence 99999999998775
No 56
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=3.9e-34 Score=346.23 Aligned_cols=199 Identities=23% Similarity=0.308 Sum_probs=166.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhce
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~i 462 (1091)
.++++|++++|++ ..|+++||+|++||++||+||+|||||||+++|.|+++|++|+|.++ .+|
T Consensus 357 ~l~~~~l~~~~~~----~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~-------------~~i 419 (607)
T 3bk7_A 357 LVEYPRLVKDYGS----FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD-------------LTV 419 (607)
T ss_dssp EEEECCEEEECSS----CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCC-------------CCE
T ss_pred EEEEeceEEEecc----eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEe-------------eEE
Confidence 4899999999952 36999999999999999999999999999999999999999999863 379
Q ss_pred eEEeccCcc-ccccHHHHhccC-CCC-CCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhc
Q 001371 463 GLVSQEPVL-FTGSIKDNIAYG-KDD-ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1091)
Q Consensus 463 a~V~Q~~~L-f~~TIreNI~~g-~~~-~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~ 539 (1091)
+||||++.+ ++.|++||+.+. .+. ...+++.++++..++.+ -.+. ...+||||||||++|||||.+
T Consensus 420 ~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~----~~~~LSGGe~QRv~iAraL~~ 488 (607)
T 3bk7_A 420 AYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIID-------LYDR----NVEDLSGGELQRVAIAATLLR 488 (607)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTT-------TTTS----BGGGCCHHHHHHHHHHHHHTS
T ss_pred EEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCch-------HhcC----ChhhCCHHHHHHHHHHHHHHh
Confidence 999999876 677999998753 111 12334455555544422 1233 335799999999999999999
Q ss_pred CCCEEEeeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEccCchhhhc-cCeEEEEeC--CEEeeecChhHHhc
Q 001371 540 DPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHR--GKIVEKGTHSKLVE 609 (1091)
Q Consensus 540 ~~~IliLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~~-aD~Iivl~~--G~Ive~Gt~~eL~~ 609 (1091)
+|+||||||||++||+.+...+.+.|+++. .++|+|+|||++..+.. ||+|++|++ |+++..|+++++..
T Consensus 489 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 489 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 999999999999999999999999998874 48999999999999864 999999986 88888999988864
No 57
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=3.3e-34 Score=343.77 Aligned_cols=199 Identities=23% Similarity=0.305 Sum_probs=165.5
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhce
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~i 462 (1091)
.++++|++++|.+ ..|+++||+|++||++||+||+|||||||+++|.|+++|++|+|.++ .+|
T Consensus 287 ~l~~~~l~~~~~~----~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~-------------~~i 349 (538)
T 1yqt_A 287 LVTYPRLVKDYGS----FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWD-------------LTV 349 (538)
T ss_dssp EEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCC-------------CCE
T ss_pred EEEEeeEEEEECC----EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC-------------ceE
Confidence 4899999999952 46999999999999999999999999999999999999999999862 269
Q ss_pred eEEeccCcc-ccccHHHHhccC-CCC-CCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhc
Q 001371 463 GLVSQEPVL-FTGSIKDNIAYG-KDD-ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1091)
Q Consensus 463 a~V~Q~~~L-f~~TIreNI~~g-~~~-~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~ 539 (1091)
+||||++.. ++.|+.||+... .+. ...+++.++++..++ .........+||||||||++|||||++
T Consensus 350 ~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSGGe~qrv~lAraL~~ 418 (538)
T 1yqt_A 350 AYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGI-----------IDLYDREVNELSGGELQRVAIAATLLR 418 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTC-----------GGGTTSBGGGCCHHHHHHHHHHHHHTS
T ss_pred EEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCC-----------hhhhcCChhhCCHHHHHHHHHHHHHHh
Confidence 999999976 567999998643 111 123334444444333 222334446799999999999999999
Q ss_pred CCCEEEeeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEccCchhhh-ccCeEEEEeC--CEEeeecChhHHhc
Q 001371 540 DPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVR-NADMIAVIHR--GKIVEKGTHSKLVE 609 (1091)
Q Consensus 540 ~~~IliLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~-~aD~Iivl~~--G~Ive~Gt~~eL~~ 609 (1091)
+|++|||||||++||..+...+.+.|+++. .++|+|+|||++..+. .||+|++|++ |+++..|++++++.
T Consensus 419 ~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 419 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 999999999999999999999999998874 4899999999999986 4999999986 88888999988764
No 58
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=8.1e-34 Score=339.11 Aligned_cols=199 Identities=21% Similarity=0.273 Sum_probs=166.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhce
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~i 462 (1091)
.++++|++++|++ ..|++.||+|++||++||+||||||||||+++|+|+++|++|+|.++|. .+
T Consensus 269 ~l~~~~l~~~~~~----~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~i 332 (538)
T 3ozx_A 269 KMKWTKIIKKLGD----FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQ------------IL 332 (538)
T ss_dssp EEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCC------------CE
T ss_pred eEEEcceEEEECC----EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCe------------ee
Confidence 5889999999952 4688889999999999999999999999999999999999999998863 68
Q ss_pred eEEeccCcc-ccccHHHHhccCCCC---CCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhh
Q 001371 463 GLVSQEPVL-FTGSIKDNIAYGKDD---ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1091)
Q Consensus 463 a~V~Q~~~L-f~~TIreNI~~g~~~---~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll 538 (1091)
+|+||++.. +..|++||+.+.... ...+.+.++++..++.+. ......+||||||||++|||||.
T Consensus 333 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSGGq~QRv~iAraL~ 401 (538)
T 3ozx_A 333 SYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRL-----------LESNVNDLSGGELQKLYIAATLA 401 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGC-----------TTSBGGGCCHHHHHHHHHHHHHH
T ss_pred EeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHH-----------hcCChhhCCHHHHHHHHHHHHHH
Confidence 999999864 578999999764321 123345556665555432 23344579999999999999999
Q ss_pred cCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEccCchhhhc-cCeEEEEeC--CEEeeecChhHHh
Q 001371 539 KDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHR--GKIVEKGTHSKLV 608 (1091)
Q Consensus 539 ~~~~IliLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~~-aD~Iivl~~--G~Ive~Gt~~eL~ 608 (1091)
++|+||||||||++||+.+...+.+.|+++. .++|+|+|||++..+.. ||+|+||++ |.+...|++.++.
T Consensus 402 ~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 402 KEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLK 476 (538)
T ss_dssp SCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHHH
Confidence 9999999999999999999999999998874 47899999999999875 999999986 5666677776654
No 59
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.98 E-value=6.8e-33 Score=335.33 Aligned_cols=197 Identities=21% Similarity=0.344 Sum_probs=158.9
Q ss_pred cEEE--------EeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEE---------EE
Q 001371 383 DIEL--------RDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV---------LI 445 (1091)
Q Consensus 383 ~I~~--------~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I---------~i 445 (1091)
.|++ +|++++|+++ ..+|+|+| +|++||++||+||||||||||+++|.|+++|++|++ .+
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~~--~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~ 159 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGVN--AFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAF 159 (607)
T ss_dssp CCEEEEECTTGGGSEEEECSTT--CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHT
T ss_pred eEEEecCCccccCCeEEEECCC--CeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhhee
Confidence 3788 8999999632 25899999 999999999999999999999999999999999996 45
Q ss_pred CCccccCCChHH--HhhceeEEeccC----ccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccC
Q 001371 446 DGINLKEFQLQW--IRKKIGLVSQEP----VLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEH 519 (1091)
Q Consensus 446 dg~~i~~~~~~~--lr~~ia~V~Q~~----~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~ 519 (1091)
+|.++.+..... .+..+++++|.. .++.+|++||+.... ..+++.++++..++.+.. +..+
T Consensus 160 ~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~---~~~~~~~~L~~lgL~~~~-------~~~~--- 226 (607)
T 3bk7_A 160 RGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVD---EVGKFEEVVKELELENVL-------DREL--- 226 (607)
T ss_dssp TTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTC---CSSCHHHHHHHTTCTTGG-------GSBG---
T ss_pred CCEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhhH---HHHHHHHHHHHcCCCchh-------CCCh---
Confidence 676665432221 234688888874 344569999997532 234566777776664332 2333
Q ss_pred CCCCChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCeEEEEeCC
Q 001371 520 GTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRG 596 (1091)
Q Consensus 520 G~~LSGGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G 596 (1091)
.+||||||||++|||||+++|+|||||||||+||+.+...+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|
T Consensus 227 -~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 227 -HQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp -GGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCC
Confidence 4699999999999999999999999999999999999999999998864 48999999999998865 9999999865
No 60
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.2e-32 Score=332.24 Aligned_cols=198 Identities=23% Similarity=0.378 Sum_probs=163.9
Q ss_pred EeEEEECCCCCCCccccceeEEeeCC-----CEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhc
Q 001371 387 RDVYFSYPARPNEQIFSGFSISISSG-----TTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1091)
Q Consensus 387 ~~vsf~Y~~~~~~~vL~~isl~i~~G-----~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ 461 (1091)
++++|+|++ ...+++|+||++++| |+++|+||||||||||+++|.|+++|++|+. +. +..
T Consensus 350 ~~~~~~y~~--~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~-------~~~ 414 (608)
T 3j16_B 350 ASRAFSYPS--LKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP-------KLN 414 (608)
T ss_dssp SSSCCEECC--EEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC-------SCC
T ss_pred cceeEEecC--cccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc-------CCc
Confidence 678899974 246899999999999 8899999999999999999999999999973 11 236
Q ss_pred eeEEeccCc-cccccHHHHhccCC--CCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhh
Q 001371 462 IGLVSQEPV-LFTGSIKDNIAYGK--DDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1091)
Q Consensus 462 ia~V~Q~~~-Lf~~TIreNI~~g~--~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll 538 (1091)
++|+||++. .|..|++||+.... ...+.+...++++..++.+. .+ ..-.+||||||||++|||||.
T Consensus 415 i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~-------~~----~~~~~LSGGqkQRv~iAraL~ 483 (608)
T 3j16_B 415 VSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDI-------ID----QEVQHLSGGELQRVAIVLALG 483 (608)
T ss_dssp EEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTT-------SS----SBSSSCCHHHHHHHHHHHHTT
T ss_pred EEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCChhh-------hc----CChhhCCHHHHHHHHHHHHHH
Confidence 999999975 57789999986422 12344555666666555332 22 334579999999999999999
Q ss_pred cCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEccCchhhhc-cCeEEEEeC--CEEeeecChhHHhcC
Q 001371 539 KDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHR--GKIVEKGTHSKLVED 610 (1091)
Q Consensus 539 ~~~~IliLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~~-aD~Iivl~~--G~Ive~Gt~~eL~~~ 610 (1091)
.+|+||||||||++||+.+...+.+.|+++. .++|+|+|||++..+.. ||+|++|++ |+++..|++++++..
T Consensus 484 ~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 484 IPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp SCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred hCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 9999999999999999999999999998864 48999999999998865 999999986 999999999999864
No 61
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.97 E-value=3.1e-31 Score=330.02 Aligned_cols=197 Identities=25% Similarity=0.338 Sum_probs=163.5
Q ss_pred CcEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhc
Q 001371 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1091)
Q Consensus 382 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ 461 (1091)
..+...|++++|++ +++|+|+||+|++|++++|+||+|||||||+++|.| |+| +|.+... +.+
T Consensus 434 ~~L~~~~ls~~yg~---~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~------~~~ 496 (986)
T 2iw3_A 434 EDLCNCEFSLAYGA---KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQE------ECR 496 (986)
T ss_dssp CEEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTT------TSC
T ss_pred ceeEEeeEEEEECC---EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCcccc------cee
Confidence 35888899999963 479999999999999999999999999999999995 554 5544321 124
Q ss_pred eeEEeccC-cc-ccccHHHHhccCCCCCCHHHHHHHHHHcccH-HHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhh
Q 001371 462 IGLVSQEP-VL-FTGSIKDNIAYGKDDATTEEIRVATELANAA-KFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1091)
Q Consensus 462 ia~V~Q~~-~L-f~~TIreNI~~g~~~~~~~~i~~a~~~a~l~-~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll 538 (1091)
++|++|++ .+ ...|++||+.+..... ++++.++++..++. +...+ .+ .+||||||||++|||||+
T Consensus 497 ~~~v~q~~~~~~~~ltv~e~l~~~~~~~-~~~v~~~L~~lgL~~~~~~~-------~~----~~LSGGqkQRvaLArAL~ 564 (986)
T 2iw3_A 497 TVYVEHDIDGTHSDTSVLDFVFESGVGT-KEAIKDKLIEFGFTDEMIAM-------PI----SALSGGWKMKLALARAVL 564 (986)
T ss_dssp EEETTCCCCCCCTTSBHHHHHHTTCSSC-HHHHHHHHHHTTCCHHHHHS-------BG----GGCCHHHHHHHHHHHHHH
T ss_pred EEEEcccccccccCCcHHHHHHHhhcCH-HHHHHHHHHHcCCChhhhcC-------Cc----ccCCHHHHHHHHHHHHHh
Confidence 78999985 33 4569999997621112 67788888888883 44332 22 469999999999999999
Q ss_pred cCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCeEEEEeCCEEe-eecChhHHhc
Q 001371 539 KDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIV-EKGTHSKLVE 609 (1091)
Q Consensus 539 ~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Iivl~~G~Iv-e~Gt~~eL~~ 609 (1091)
.+|+||||||||++||+.+.+.+.+.|++ .++|+|+|||++..+.. ||+|++|++|+++ ..|+++++.+
T Consensus 565 ~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 565 RNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp TTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 99999999999999999999999999988 68999999999999865 9999999999997 5899999865
No 62
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.97 E-value=1.3e-32 Score=330.07 Aligned_cols=196 Identities=21% Similarity=0.346 Sum_probs=154.5
Q ss_pred EEE-EeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEE---------EECCccccCC
Q 001371 384 IEL-RDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV---------LIDGINLKEF 453 (1091)
Q Consensus 384 I~~-~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I---------~idg~~i~~~ 453 (1091)
.++ +|++++|++. ..+|+|+| +|++||++||+||||||||||+++|.|+++|++|++ .++|.++.+.
T Consensus 21 ~~~~~~ls~~yg~~--~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~ 97 (538)
T 1yqt_A 21 EQLEEDCVHRYGVN--AFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNY 97 (538)
T ss_dssp ---CCCEEEECSTT--CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHH
T ss_pred hhHhcCcEEEECCc--cccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHH
Confidence 355 6899999632 25899999 999999999999999999999999999999999996 4577666543
Q ss_pred ChHH--HhhceeEEeccCcc----ccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHH
Q 001371 454 QLQW--IRKKIGLVSQEPVL----FTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQ 527 (1091)
Q Consensus 454 ~~~~--lr~~ia~V~Q~~~L----f~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQ 527 (1091)
.... .+..+++++|+..+ +.+|++||+.... ..+++.++++..++.++ .+..+ .+|||||
T Consensus 98 ~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~---~~~~~~~~l~~lgl~~~-------~~~~~----~~LSgGe 163 (538)
T 1yqt_A 98 FEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKAD---ETGKLEEVVKALELENV-------LEREI----QHLSGGE 163 (538)
T ss_dssp HHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHC---SSSCHHHHHHHTTCTTT-------TTSBG----GGCCHHH
T ss_pred HHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhh---HHHHHHHHHHHcCCChh-------hhCCh----hhCCHHH
Confidence 2121 12468899987543 3469999986422 12456677777665332 23333 4699999
Q ss_pred HHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCeEEEEeCC
Q 001371 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRG 596 (1091)
Q Consensus 528 kQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G 596 (1091)
|||++|||||+.+|+|||||||||+||+.+.+.+.+.|+++. .++|+|+|||++..+.. ||+|++|++|
T Consensus 164 kQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 164 LQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp HHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred HHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 999999999999999999999999999999999999998764 48999999999998865 9999999864
No 63
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.97 E-value=4.1e-32 Score=336.81 Aligned_cols=204 Identities=25% Similarity=0.417 Sum_probs=137.0
Q ss_pred CccccceeEEeeCCCEEEEEcCCCCcHHHHH---------------------HHHhccCCCC-------CcEEEECCccc
Q 001371 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVI---------------------SLIERFYDPQ-------AGEVLIDGINL 450 (1091)
Q Consensus 399 ~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl---------------------~ll~g~~~~~-------~G~I~idg~~i 450 (1091)
..+|+||||+|++||++||+||||||||||+ +++.++..|+ .|.|.++|.++
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 4689999999999999999999999999998 8888999998 45566666554
Q ss_pred cCCChHHHhhceeEEeccCccc--------------------cccHHHHhccCCCC-CCH--HH-----HHHHHHHcccH
Q 001371 451 KEFQLQWIRKKIGLVSQEPVLF--------------------TGSIKDNIAYGKDD-ATT--EE-----IRVATELANAA 502 (1091)
Q Consensus 451 ~~~~~~~lr~~ia~V~Q~~~Lf--------------------~~TIreNI~~g~~~-~~~--~~-----i~~a~~~a~l~ 502 (1091)
... .|+.+++|+|.+.++ ..|++||+.+.... ..+ .+ ..++.+..
T Consensus 111 ~~~----~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 183 (670)
T 3ux8_A 111 SRN----PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL--- 183 (670)
T ss_dssp --------CCBHHHHTTCC-------------------------CC--------------------------CHHHH---
T ss_pred hcc----chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHH---
Confidence 332 345677777765432 45899999875310 111 11 11111111
Q ss_pred HHHhhCCCCcccc-cccCCCCCChHHHHHHHHHHHhhcCCC--EEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEc
Q 001371 503 KFIDKLPQGIDTL-VGEHGTQLSGGQKQRIAIARAILKDPR--ILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVA 578 (1091)
Q Consensus 503 ~~i~~lp~G~~T~-vge~G~~LSGGQkQRialARAll~~~~--IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~It 578 (1091)
+.++.+ |++.. ......+||||||||++|||||+.+|+ |||||||||+||+.+...+.+.|+++. +++|+|+||
T Consensus 184 ~~l~~~--gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vt 261 (670)
T 3ux8_A 184 GFLQNV--GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVE 261 (670)
T ss_dssp HHHHHT--TCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHc--CCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 123333 22211 223345799999999999999999998 999999999999999999999988764 579999999
Q ss_pred cCchhhhccCeEEEE------eCCEEeeecChhHHhcCC
Q 001371 579 HRLSTVRNADMIAVI------HRGKIVEKGTHSKLVEDP 611 (1091)
Q Consensus 579 Hrls~i~~aD~Iivl------~~G~Ive~Gt~~eL~~~~ 611 (1091)
|+++.+..||+|++| ++|+|++.|+++++.+.+
T Consensus 262 Hd~~~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~~~ 300 (670)
T 3ux8_A 262 HDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMNDP 300 (670)
T ss_dssp CCHHHHHHCSEEEEECSSSGGGCCSEEEEECHHHHHTCT
T ss_pred CCHHHHhhCCEEEEecccccccCCEEEEecCHHHHhcCc
Confidence 999999899999999 899999999999998763
No 64
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.97 E-value=6.1e-32 Score=335.20 Aligned_cols=201 Identities=24% Similarity=0.360 Sum_probs=150.5
Q ss_pred CccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHh---------------------ccCCCCCcEEEECCccccCCChHH
Q 001371 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIE---------------------RFYDPQAGEVLIDGINLKEFQLQW 457 (1091)
Q Consensus 399 ~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~---------------------g~~~~~~G~I~idg~~i~~~~~~~ 457 (1091)
.++|+||||+|++||++||+||||||||||+++|+ +-+.+.+|.|.++|.++...+...
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~~~~i~~~~~~~~~~~~~~ 414 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSN 414 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGCSEEEECCSSCSCSSTTCC
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhcccccccccccccccccCceeEeccccCCCCCCcc
Confidence 46899999999999999999999999999998764 122344678999998886544221
Q ss_pred Hhhc-----------------------------------------eeEEeccCcc-------------------------
Q 001371 458 IRKK-----------------------------------------IGLVSQEPVL------------------------- 471 (1091)
Q Consensus 458 lr~~-----------------------------------------ia~V~Q~~~L------------------------- 471 (1091)
.+.. .+++.|+..+
T Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (670)
T 3ux8_A 415 PATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTY 494 (670)
T ss_dssp HHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCCB
T ss_pred hhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhheee
Confidence 1111 1223332221
Q ss_pred --------ccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcc-cccccCCCCCChHHHHHHHHHHHhhcCC-
Q 001371 472 --------FTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQKQRIAIARAILKDP- 541 (1091)
Q Consensus 472 --------f~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~-T~vge~G~~LSGGQkQRialARAll~~~- 541 (1091)
+..|++||+.+.......++..+++ ..+ |+. ...+....+||||||||++|||||+++|
T Consensus 495 ~~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~l---------~~~--~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~ 563 (670)
T 3ux8_A 495 KGKNIAEVLDMTVEDALDFFASIPKIKRKLETL---------YDV--GLGYMKLGQPATTLSGGEAQRVKLAAELHRRSN 563 (670)
T ss_dssp TTBCHHHHHTSBHHHHHHHTTTCHHHHHHHHHH---------HHT--TCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCC
T ss_pred cCCCHHHHhhCCHHHHHHHHHHhhhHHHHHHHH---------HHc--CCchhhccCCchhCCHHHHHHHHHHHHHhhCCC
Confidence 2458889988764321122222222 222 222 2345667789999999999999999887
Q ss_pred --CEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhhccCeEEEE------eCCEEeeecChhHHhcC
Q 001371 542 --RILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIAVI------HRGKIVEKGTHSKLVED 610 (1091)
Q Consensus 542 --~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~aD~Iivl------~~G~Ive~Gt~~eL~~~ 610 (1091)
+|||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+..||+|++| ++|+|++.|+++|+.+.
T Consensus 564 ~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~~~ 641 (670)
T 3ux8_A 564 GRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEV 641 (670)
T ss_dssp SCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEECHHHHHTC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHhCCEEEEecCCcCCCCCEEEEecCHHHHHhC
Confidence 5999999999999999999999998865 489999999999999999999999 89999999999999876
No 65
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.97 E-value=2.7e-31 Score=330.95 Aligned_cols=207 Identities=26% Similarity=0.421 Sum_probs=155.8
Q ss_pred ccccceeEEeeCCCEEEEEcCCCCcHHHHH---------HHHhccCCCC------Cc------EEEECCccccCCCh---
Q 001371 400 QIFSGFSISISSGTTAALVGQSGSGKSTVI---------SLIERFYDPQ------AG------EVLIDGINLKEFQL--- 455 (1091)
Q Consensus 400 ~vL~~isl~i~~G~~vaIVG~sGsGKSTLl---------~ll~g~~~~~------~G------~I~idg~~i~~~~~--- 455 (1091)
..|+||||+|++|++++|+|+||||||||+ +++.+...+. +| .|.+|+.++.....
T Consensus 598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~ 677 (916)
T 3pih_A 598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNP 677 (916)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCH
T ss_pred ccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeeccccccccccccc
Confidence 579999999999999999999999999997 3444433322 23 35666655533211
Q ss_pred -------HHHh-------------------------------hceeEEeccCccc-------------------------
Q 001371 456 -------QWIR-------------------------------KKIGLVSQEPVLF------------------------- 472 (1091)
Q Consensus 456 -------~~lr-------------------------------~~ia~V~Q~~~Lf------------------------- 472 (1091)
..+| +..|+++|+..++
T Consensus 678 at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~ 757 (916)
T 3pih_A 678 ATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYK 757 (916)
T ss_dssp HHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBT
T ss_pred cchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhc
Confidence 1112 2356777776544
Q ss_pred --------cccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCC---
Q 001371 473 --------TGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP--- 541 (1091)
Q Consensus 473 --------~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~--- 541 (1091)
+.|++||+.|.......++..++++.+++ || ..+|+.+.+|||||||||+|||||+++|
T Consensus 758 g~~i~~vl~~tv~eal~f~~~~~~~~~~~~~L~~vGL---------~~-~~lgq~~~~LSGGErQRV~LAraL~~~p~~p 827 (916)
T 3pih_A 758 GKNISDILDMTVDEALEFFKNIPSIKRTLQVLHDVGL---------GY-VKLGQPATTLSGGEAQRIKLASELRKRDTGR 827 (916)
T ss_dssp TBCHHHHHSSBHHHHHHHTTTCHHHHHHHHHHHHTTG---------GG-SBTTCCSTTCCHHHHHHHHHHHHHTSCCCSS
T ss_pred cCCHHHHhhCCHHHHHHHHhcchhHHHHHHHHHHcCC---------ch-hhccCCccCCCHHHHHHHHHHHHHhhCCCCC
Confidence 34667776665432222334444444443 22 3478889999999999999999999876
Q ss_pred CEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhhccCeEEEE------eCCEEeeecChhHHhcCCCch
Q 001371 542 RILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIAVI------HRGKIVEKGTHSKLVEDPEGA 614 (1091)
Q Consensus 542 ~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~aD~Iivl------~~G~Ive~Gt~~eL~~~~~~~ 614 (1091)
+||||||||++||+.+++.+.+.|+++. +|+|+|+|+|+++.++.||+|++| ++|+|+++|+|+|+++. .+.
T Consensus 828 ~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~~-~~s 906 (916)
T 3pih_A 828 TLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAKN-PHS 906 (916)
T ss_dssp EEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEESHHHHHSC-TTC
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEecCCCCCCCCEEEEEcCHHHHHhC-Cch
Confidence 7999999999999999999999998874 589999999999999999999999 89999999999999987 444
Q ss_pred hHH
Q 001371 615 YSQ 617 (1091)
Q Consensus 615 y~~ 617 (1091)
|..
T Consensus 907 yt~ 909 (916)
T 3pih_A 907 YTG 909 (916)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 66
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.9e-30 Score=313.05 Aligned_cols=196 Identities=20% Similarity=0.341 Sum_probs=152.1
Q ss_pred eEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEE-----------EECCccccCCChH
Q 001371 388 DVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV-----------LIDGINLKEFQLQ 456 (1091)
Q Consensus 388 ~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I-----------~idg~~i~~~~~~ 456 (1091)
|++++|.. ....|++++ ++++||++||+||||||||||+++|.|+++|++|+| .++|.++..+...
T Consensus 82 ~~~~~Y~~--~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~ 158 (608)
T 3j16_B 82 HVTHRYSA--NSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTK 158 (608)
T ss_dssp TEEEECST--TSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHH
T ss_pred CeEEEECC--CceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhH
Confidence 57899964 345788777 699999999999999999999999999999999998 4556555554444
Q ss_pred HHhhceeE--EeccCc----ccc---ccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHH
Q 001371 457 WIRKKIGL--VSQEPV----LFT---GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQ 527 (1091)
Q Consensus 457 ~lr~~ia~--V~Q~~~----Lf~---~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQ 527 (1091)
.+++.+.. .+|... .+. .++.+++..... ..++++.++++..++.++.+ ..-.+|||||
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~-~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGe 226 (608)
T 3j16_B 159 MLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRME-KSPEDVKRYIKILQLENVLK-----------RDIEKLSGGE 226 (608)
T ss_dssp HHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCC-SCHHHHHHHHHHHTCTGGGG-----------SCTTTCCHHH
T ss_pred HHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhh-hHHHHHHHHHHHcCCcchhC-----------CChHHCCHHH
Confidence 44555433 333221 111 256777654332 35677888888777654433 2335799999
Q ss_pred HHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCeEEEEeCCEE
Q 001371 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKI 598 (1091)
Q Consensus 528 kQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~I 598 (1091)
|||++|||||+++|+|||||||||+||+.+...+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|..
T Consensus 227 ~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~~ 299 (608)
T 3j16_B 227 LQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPS 299 (608)
T ss_dssp HHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCTT
T ss_pred HHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcc
Confidence 999999999999999999999999999999999999998875 47899999999999875 999999998653
No 67
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.96 E-value=8.6e-31 Score=313.01 Aligned_cols=193 Identities=22% Similarity=0.377 Sum_probs=153.2
Q ss_pred EeEEEECCCCCCCccccceeEEee-CCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEE-----------EECCccccCCC
Q 001371 387 RDVYFSYPARPNEQIFSGFSISIS-SGTTAALVGQSGSGKSTVISLIERFYDPQAGEV-----------LIDGINLKEFQ 454 (1091)
Q Consensus 387 ~~vsf~Y~~~~~~~vL~~isl~i~-~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I-----------~idg~~i~~~~ 454 (1091)
++++.+|.. + -++-..|.++ +||++||+||+|||||||+++|+|++.|++|+| .++|.++..+.
T Consensus 3 ~~~~~~~~~--~--~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~ 78 (538)
T 3ozx_A 3 GEVIHRYKV--N--GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYF 78 (538)
T ss_dssp CCEEEESST--T--SCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHH
T ss_pred CCCceecCC--C--ceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHH
Confidence 356788953 2 3555556655 899999999999999999999999999999998 67787765432
Q ss_pred hHHH------hhceeEEeccCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHH
Q 001371 455 LQWI------RKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1091)
Q Consensus 455 ~~~l------r~~ia~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQk 528 (1091)
.... +..+.|++|.+.++.+|+++++.... ..+++.++++..++.++. +..+ .+||||||
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~---~~~~~~~~l~~l~l~~~~-------~~~~----~~LSgGe~ 144 (538)
T 3ozx_A 79 KELYSNELKIVHKIQYVEYASKFLKGTVNEILTKID---ERGKKDEVKELLNMTNLW-------NKDA----NILSGGGL 144 (538)
T ss_dssp HHHHTTCCCEEEECSCTTGGGTTCCSBHHHHHHHHC---CSSCHHHHHHHTTCGGGT-------TSBG----GGCCHHHH
T ss_pred HHHhhcccchhhccchhhhhhhhccCcHHHHhhcch---hHHHHHHHHHHcCCchhh-------cCCh----hhCCHHHH
Confidence 2222 22456677777888899999886322 233566777777764432 3333 46999999
Q ss_pred HHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCeEEEEeCCE
Q 001371 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGK 597 (1091)
Q Consensus 529 QRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Iivl~~G~ 597 (1091)
||++|||||+++|+|||||||||+||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|.
T Consensus 145 Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~~~d~i~vl~~~~ 214 (538)
T 3ozx_A 145 QRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGES 214 (538)
T ss_dssp HHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHHhhCCEEEEecCCc
Confidence 9999999999999999999999999999999999999998789999999999998865 99999998754
No 68
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.96 E-value=1.3e-29 Score=313.31 Aligned_cols=210 Identities=26% Similarity=0.396 Sum_probs=157.5
Q ss_pred CcEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHH-HhccC-------CC---------------
Q 001371 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISL-IERFY-------DP--------------- 438 (1091)
Q Consensus 382 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~l-l~g~~-------~~--------------- 438 (1091)
..|+++|+++ .+|+||||+|++|+++||+|+||||||||++. |.|.+ .|
T Consensus 501 ~~L~v~~l~~--------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~ 572 (842)
T 2vf7_A 501 GWLELNGVTR--------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAG 572 (842)
T ss_dssp CEEEEEEEEE--------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------C
T ss_pred ceEEEEeeee--------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccc
Confidence 3599999986 16999999999999999999999999999996 66543 22
Q ss_pred ---CCc-------EEEECCccccCCCh----------HHHhhceeEEecc--------Cccc------------------
Q 001371 439 ---QAG-------EVLIDGINLKEFQL----------QWIRKKIGLVSQE--------PVLF------------------ 472 (1091)
Q Consensus 439 ---~~G-------~I~idg~~i~~~~~----------~~lr~~ia~V~Q~--------~~Lf------------------ 472 (1091)
.+| .|.+||.++..-+. +.+|+.++++|++ .+-|
T Consensus 573 ~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~ 652 (842)
T 2vf7_A 573 SARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMV 652 (842)
T ss_dssp CCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEE
T ss_pred cccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccch
Confidence 466 68999988864332 3455444433321 0111
Q ss_pred ------------------------------cccHHHHhc--------cCCCCCCHHHHHHHHHHcccHHHHhhCCCCccc
Q 001371 473 ------------------------------TGSIKDNIA--------YGKDDATTEEIRVATELANAAKFIDKLPQGIDT 514 (1091)
Q Consensus 473 ------------------------------~~TIreNI~--------~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T 514 (1091)
..||.||+. |.... .+..+ ..+.++.+ |+..
T Consensus 653 ~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~~---~~~~~------~~~~L~~~--gL~~ 721 (842)
T 2vf7_A 653 ELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFADE---SAIFR------ALDTLREV--GLGY 721 (842)
T ss_dssp TTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTTS---HHHHH------HHHHHHHT--TCTT
T ss_pred hhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhcc---hHHHH------HHHHHHHc--CCCc
Confidence 124555543 22111 11111 23344454 3333
Q ss_pred -ccccCCCCCChHHHHHHHHHHHhhcC---CCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhhccCe
Q 001371 515 -LVGEHGTQLSGGQKQRIAIARAILKD---PRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADM 589 (1091)
Q Consensus 515 -~vge~G~~LSGGQkQRialARAll~~---~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~aD~ 589 (1091)
.++....+||||||||++|||||.++ |+||||||||++||+.+.+.+.+.|+++. +++|+|+|||++..++.||+
T Consensus 722 ~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i~~aDr 801 (842)
T 2vf7_A 722 LRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDW 801 (842)
T ss_dssp SBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSE
T ss_pred ccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCE
Confidence 35777789999999999999999996 79999999999999999999999998864 68999999999999999999
Q ss_pred EEEE------eCCEEeeecChhHHhcC
Q 001371 590 IAVI------HRGKIVEKGTHSKLVED 610 (1091)
Q Consensus 590 Iivl------~~G~Ive~Gt~~eL~~~ 610 (1091)
|++| ++|+|++.|+++++.+.
T Consensus 802 ii~L~p~~g~~~G~Iv~~g~~~el~~~ 828 (842)
T 2vf7_A 802 VLDIGPGAGEDGGRLVAQGTPAEVAQA 828 (842)
T ss_dssp EEEECSSSGGGCCSEEEEECHHHHTTC
T ss_pred EEEECCCCCCCCCEEEEEcCHHHHHhC
Confidence 9999 69999999999999876
No 69
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.96 E-value=8.2e-29 Score=305.32 Aligned_cols=214 Identities=24% Similarity=0.373 Sum_probs=159.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHh-c----cCC---CCCc-------------
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIE-R----FYD---PQAG------------- 441 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~-g----~~~---~~~G------------- 441 (1091)
.++++|++. ..|+||||+|++|+++||+|+||||||||++.|+ | .+. +..|
T Consensus 629 ~L~v~~l~~--------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~ 700 (972)
T 2r6f_A 629 WLEVVGARE--------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDK 700 (972)
T ss_dssp EEEEEEECS--------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSE
T ss_pred EEEEecCcc--------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccce
Confidence 488888852 3699999999999999999999999999999864 2 211 1233
Q ss_pred EEEECCccccCCC---h-------HHHh---------hceeEEeccCcc-------------------------------
Q 001371 442 EVLIDGINLKEFQ---L-------QWIR---------KKIGLVSQEPVL------------------------------- 471 (1091)
Q Consensus 442 ~I~idg~~i~~~~---~-------~~lr---------~~ia~V~Q~~~L------------------------------- 471 (1091)
.|.+||.++..-+ + +.+| +.++|++|...+
T Consensus 701 ~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce 780 (972)
T 2r6f_A 701 VIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCE 780 (972)
T ss_dssp EEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECT
T ss_pred EEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhcccccccccc
Confidence 4889998875321 1 1122 346888885321
Q ss_pred ------------------------ccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCccc-ccccCCCCCChH
Q 001371 472 ------------------------FTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDT-LVGEHGTQLSGG 526 (1091)
Q Consensus 472 ------------------------f~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T-~vge~G~~LSGG 526 (1091)
.+.|+.||+.|... .. ++.++ .+.++.+ |+.. ..+....+||||
T Consensus 781 ~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~-~~--~~~~~------~~~L~~~--gL~~~~l~~~~~~LSGG 849 (972)
T 2r6f_A 781 VCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFAS-IP--KIKRK------LETLYDV--GLGYMKLGQPATTLSGG 849 (972)
T ss_dssp TTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCS-CH--HHHHH------HHHHHHT--TCSSSBTTCCGGGCCHH
T ss_pred ccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhc-ch--hHHHH------HHHHHHc--CCCcccccCchhhCCHH
Confidence 02255666655432 11 11111 2334444 4444 567777899999
Q ss_pred HHHHHHHHHHhhcCC---CEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhhccCeEEEE------eCC
Q 001371 527 QKQRIAIARAILKDP---RILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIAVI------HRG 596 (1091)
Q Consensus 527 QkQRialARAll~~~---~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~aD~Iivl------~~G 596 (1091)
||||++|||||+++| +||||||||++||+.+.+.+.+.|+++. +++|+|+|||++..+..||+|++| ++|
T Consensus 850 ekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gG~~~G 929 (972)
T 2r6f_A 850 EAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGG 929 (972)
T ss_dssp HHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECSSSTTSCC
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEEcCCCCCCCC
Confidence 999999999999875 9999999999999999999999998764 589999999999999999999999 799
Q ss_pred EEeeecChhHHhcCCCchhH
Q 001371 597 KIVEKGTHSKLVEDPEGAYS 616 (1091)
Q Consensus 597 ~Ive~Gt~~eL~~~~~~~y~ 616 (1091)
+|++.|+++++.+. ...|.
T Consensus 930 ~Iv~~g~~~el~~~-~~~~t 948 (972)
T 2r6f_A 930 QIVAVGTPEEVAEV-KESHT 948 (972)
T ss_dssp SEEEEESHHHHHTC-TTCHH
T ss_pred EEEEecCHHHHHhC-chhHH
Confidence 99999999999876 33443
No 70
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.7e-32 Score=321.16 Aligned_cols=179 Identities=13% Similarity=0.102 Sum_probs=146.2
Q ss_pred ceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCc-E-EEECCccccCCChHHHhhceeEEeccCcccc----ccHH
Q 001371 404 GFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG-E-VLIDGINLKEFQLQWIRKKIGLVSQEPVLFT----GSIK 477 (1091)
Q Consensus 404 ~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G-~-I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~----~TIr 477 (1091)
++||++++|++++|+||+|||||||+++|+|++.|++| + |.+||. .|+.++||||++.+|. .|++
T Consensus 130 ~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~---------~~~~i~~vpq~~~l~~~~~~~tv~ 200 (460)
T 2npi_A 130 KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD---------PQQPIFTVPGCISATPISDILDAQ 200 (460)
T ss_dssp HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECC---------TTSCSSSCSSCCEEEECCSCCCTT
T ss_pred cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCC---------ccCCeeeeccchhhcccccccchh
Confidence 79999999999999999999999999999999999999 9 999981 3778999999996654 4899
Q ss_pred HHhccCCCC----CCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHH--hhcCCCE----EEee
Q 001371 478 DNIAYGKDD----ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA--ILKDPRI----LLLD 547 (1091)
Q Consensus 478 eNI~~g~~~----~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARA--ll~~~~I----liLD 547 (1091)
||+ |+... ..++++.++++.. |++.... ..+||||||||++|||| |+.+|+| ||||
T Consensus 201 eni-~~~~~~~~~~~~~~~~~ll~~~-----------gl~~~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLD 266 (460)
T 2npi_A 201 LPT-WGQSLTSGATLLHNKQPMVKNF-----------GLERINE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVD 266 (460)
T ss_dssp CTT-CSCBCBSSCCSSCCBCCEECCC-----------CSSSGGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEE
T ss_pred hhh-cccccccCcchHHHHHHHHHHh-----------CCCcccc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEe
Confidence 999 76431 1112222222222 4444332 67899999999999999 9999999 9999
Q ss_pred C-CCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCch------hh-hccCe-----EEEEe-CCEEeeecChhHHhc
Q 001371 548 E-ATSALDAESEKVVQEALDRIMVNRTTVIVAHRLS------TV-RNADM-----IAVIH-RGKIVEKGTHSKLVE 609 (1091)
Q Consensus 548 E-~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls------~i-~~aD~-----Iivl~-~G~Ive~Gt~~eL~~ 609 (1091)
| ||++||+. .+.+.+.+++. ++|+|+|+|+.. .+ ..||+ |++|+ +|+|+ .|+++++.+
T Consensus 267 EpPts~LD~~-~~~l~~l~~~~--~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~~ 338 (460)
T 2npi_A 267 TPSISQLDEN-LAELHHIIEKL--NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYKRS 338 (460)
T ss_dssp CCCGGGSCSS-CHHHHHHHHHT--TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHHHH
T ss_pred CCcccccChh-HHHHHHHHHHh--CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHHhh
Confidence 9 99999999 66777777663 789999999987 43 46999 99999 99999 999998853
No 71
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.96 E-value=5.4e-29 Score=292.62 Aligned_cols=202 Identities=18% Similarity=0.268 Sum_probs=154.7
Q ss_pred ccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCC--------------------------------------CCCc
Q 001371 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD--------------------------------------PQAG 441 (1091)
Q Consensus 400 ~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~--------------------------------------~~~G 441 (1091)
..+++++|++++| +++||||+|||||||+++|.++.. +.+|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 3789999999999 999999999999999999966553 4578
Q ss_pred EEEECCccccCCChHHHhhc-eeEEeccCccccccHHHHhccCCCCCCH---------HHHHHHHHH-------------
Q 001371 442 EVLIDGINLKEFQLQWIRKK-IGLVSQEPVLFTGSIKDNIAYGKDDATT---------EEIRVATEL------------- 498 (1091)
Q Consensus 442 ~I~idg~~i~~~~~~~lr~~-ia~V~Q~~~Lf~~TIreNI~~g~~~~~~---------~~i~~a~~~------------- 498 (1091)
++.+||.+++..++.++++. +++++|++.++-.+..++..|-+..... .++.++.+.
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~ 207 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKHP 207 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhcC
Confidence 99999999988788888877 8999999988877665554432221110 000000000
Q ss_pred -----------------------------------cccHHHHhhC--CC----------------Cccc---ccccCCCC
Q 001371 499 -----------------------------------ANAAKFIDKL--PQ----------------GIDT---LVGEHGTQ 522 (1091)
Q Consensus 499 -----------------------------------a~l~~~i~~l--p~----------------G~~T---~vge~G~~ 522 (1091)
..+.+.+..+ |+ |.+. .++.++..
T Consensus 208 ~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 287 (415)
T 4aby_A 208 TSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPGE 287 (415)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSSC
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCCC
Confidence 0011222222 21 2222 34444444
Q ss_pred --------CChHHHHHHHHHHHhhcCC--CEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhccCeEEE
Q 001371 523 --------LSGGQKQRIAIARAILKDP--RILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAV 592 (1091)
Q Consensus 523 --------LSGGQkQRialARAll~~~--~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iiv 592 (1091)
||||||||++|||||+++| +||||||||++||+.+...+.+.|+++.+++|+|+|||+++.+..||+|++
T Consensus 288 ~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~~d~i~~ 367 (415)
T 4aby_A 288 ELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYK 367 (415)
T ss_dssp CCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEE
T ss_pred cccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhhcCeEEE
Confidence 8999999999999999999 999999999999999999999999998788999999999999999999999
Q ss_pred E----eCCEEeeec
Q 001371 593 I----HRGKIVEKG 602 (1091)
Q Consensus 593 l----~~G~Ive~G 602 (1091)
| ++|+++...
T Consensus 368 l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 368 VEKQVEDGRTVSHV 381 (415)
T ss_dssp EEEEEETTEEEEEE
T ss_pred EEEeccCCceEEEE
Confidence 9 999988653
No 72
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.95 E-value=2.8e-28 Score=301.85 Aligned_cols=209 Identities=22% Similarity=0.366 Sum_probs=154.8
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHh-----ccCC---CCCcE------------
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIE-----RFYD---PQAGE------------ 442 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~-----g~~~---~~~G~------------ 442 (1091)
.++++|++. .+|+||||+|++|+++||+|+||||||||+++|+ +.+. +..|.
T Consensus 647 ~L~v~~l~~--------~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~~ 718 (993)
T 2ygr_A 647 QLTVVGARE--------HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLDK 718 (993)
T ss_dssp EEEEEEECS--------TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCSE
T ss_pred eEEEecCcc--------ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccce
Confidence 589999852 3699999999999999999999999999999854 2222 23343
Q ss_pred -EEECCccccCCC---h-------HHHh---------hceeEEeccCcc---------------------c---------
Q 001371 443 -VLIDGINLKEFQ---L-------QWIR---------KKIGLVSQEPVL---------------------F--------- 472 (1091)
Q Consensus 443 -I~idg~~i~~~~---~-------~~lr---------~~ia~V~Q~~~L---------------------f--------- 472 (1091)
|.+|+.++..-+ + +.+| +..+|++|...+ |
T Consensus 719 ~i~idq~pig~~~rs~paty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~ce 798 (993)
T 2ygr_A 719 LVRIDQSPIGRTPRSNPATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPCE 798 (993)
T ss_dssp EECCCCSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEECT
T ss_pred EEEecCcccccCcccchhhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeeeh
Confidence 566766663221 1 1222 346777775321 0
Q ss_pred -------------------------cccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCccc-ccccCCCCCChH
Q 001371 473 -------------------------TGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDT-LVGEHGTQLSGG 526 (1091)
Q Consensus 473 -------------------------~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T-~vge~G~~LSGG 526 (1091)
+.|+.||+.|... .. .+.++ .+.++.+ |+.. ..+....+||||
T Consensus 799 ~c~G~r~~~e~l~v~~~g~si~dvl~ltv~e~l~~~~~-~~--~~~~~------~~~L~~l--gL~~~~l~~~~~~LSGG 867 (993)
T 2ygr_A 799 VCQGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFEP-IA--GVHRY------LRTLVDV--GLGYVRLGQPAPTLSGG 867 (993)
T ss_dssp TTTTCSBCGGGGGCCBTTBCHHHHHSSBHHHHHHHSTT-CH--HHHHH------HHHHHHT--TGGGSBTTCCGGGSCHH
T ss_pred hccccccchhhhhhhccCCCHHHHhhccHHHHHHHhhc-ch--HHHHH------HHHHHHc--CCCcccccCccccCCHH
Confidence 1244555544321 11 11111 2334444 4444 567788899999
Q ss_pred HHHHHHHHHHhhcCC---CEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhhccCeEEEE------eCC
Q 001371 527 QKQRIAIARAILKDP---RILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIAVI------HRG 596 (1091)
Q Consensus 527 QkQRialARAll~~~---~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~aD~Iivl------~~G 596 (1091)
||||++|||||+++| +||||||||++||+.+.+.+.+.|+++. +++|+|+|||++..++.||+|++| ++|
T Consensus 868 ekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gg~~~G 947 (993)
T 2ygr_A 868 EAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVIKTSDWIIDLGPEGGAGGG 947 (993)
T ss_dssp HHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSTTSCS
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEECCCcCCCCC
Confidence 999999999999875 9999999999999999999999998764 589999999999999999999999 689
Q ss_pred EEeeecChhHHhcC
Q 001371 597 KIVEKGTHSKLVED 610 (1091)
Q Consensus 597 ~Ive~Gt~~eL~~~ 610 (1091)
+|++.|+++++.+.
T Consensus 948 ~Iv~~G~~~el~~~ 961 (993)
T 2ygr_A 948 TVVAQGTPEDVAAV 961 (993)
T ss_dssp EEEEEECHHHHHHC
T ss_pred EEEEecCHHHHHhC
Confidence 99999999999876
No 73
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.94 E-value=1.3e-26 Score=261.82 Aligned_cols=193 Identities=20% Similarity=0.252 Sum_probs=142.6
Q ss_pred ceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcc------------------------------------------------
Q 001371 404 GFSISISSGTTAALVGQSGSGKSTVISLIERF------------------------------------------------ 435 (1091)
Q Consensus 404 ~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~------------------------------------------------ 435 (1091)
++++++.+| +++|+||+|||||||+.+|..+
T Consensus 17 ~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~r 95 (322)
T 1e69_A 17 PSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVAR 95 (322)
T ss_dssp CEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEEE
T ss_pred CeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEEE
Confidence 578899999 9999999999999999999843
Q ss_pred --CCCCCcEEEECCccccCCChHHHhhceeEEeccCccc-cccHHHHhccCCCCCCH-------------HHHHHHHHHc
Q 001371 436 --YDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLF-TGSIKDNIAYGKDDATT-------------EEIRVATELA 499 (1091)
Q Consensus 436 --~~~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf-~~TIreNI~~g~~~~~~-------------~~i~~a~~~a 499 (1091)
+.+.+|.+.+||.+++.-+...+...+++.||+..++ .|+|.+|+... |.... ..+.++.+..
T Consensus 96 ~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~-p~~rr~~ld~~~~~~~~~~~y~rv~e~~ 174 (322)
T 1e69_A 96 ELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNAS-PEELRLESSKHPTSLVPRGSYQRVNESF 174 (322)
T ss_dssp EEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC----------------------CHHHHHHH
T ss_pred EEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhcc-HHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 2344578999999886666777777899999998765 89999999753 32110 0111122210
Q ss_pred c---------------c-HHHHhhCCCCccccccc------CCCCCChHHHHHHHHHHHhh----cCCCEEEeeCCCCCC
Q 001371 500 N---------------A-AKFIDKLPQGIDTLVGE------HGTQLSGGQKQRIAIARAIL----KDPRILLLDEATSAL 553 (1091)
Q Consensus 500 ~---------------l-~~~i~~lp~G~~T~vge------~G~~LSGGQkQRialARAll----~~~~IliLDE~tSaL 553 (1091)
+ + .+....++.|+++.++. ....||||||||++|||||. ++|++||||||||+|
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~L 254 (322)
T 1e69_A 175 NRFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPL 254 (322)
T ss_dssp HHHHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSC
T ss_pred HHHHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCC
Confidence 0 0 01113456677765442 34689999999999999996 789999999999999
Q ss_pred CHHhHHHHHHHHHHHcCCCeEEEEccCchhhhccCeE--EEEeCCEE
Q 001371 554 DAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMI--AVIHRGKI 598 (1091)
Q Consensus 554 D~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~I--ivl~~G~I 598 (1091)
|+...+.+.+.|+++.+++|+|+|||+...+..||++ ++|++|+.
T Consensus 255 D~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~~~~d~~~~v~~~~g~s 301 (322)
T 1e69_A 255 DDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVNGVS 301 (322)
T ss_dssp CHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESSSCE
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhhCceEEEEEEeCCEE
Confidence 9999999999999887788999999999888899987 88888754
No 74
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.92 E-value=6.4e-28 Score=253.22 Aligned_cols=158 Identities=20% Similarity=0.234 Sum_probs=102.3
Q ss_pred CccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhceeEEeccCccccccHHH
Q 001371 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKD 478 (1091)
Q Consensus 399 ~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIre 478 (1091)
..+|+|+ ++|++++|+||+|||||||+++|+|+ +|++|+|. +.++.. +...+|++++||||++ +|
T Consensus 13 ~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~--~~~~~~-~~~~~~~~ig~v~q~~-------~e 77 (208)
T 3b85_A 13 KHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS--RIILTR-PAVEAGEKLGFLPGTL-------NE 77 (208)
T ss_dssp HHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS--EEEEEE-CSCCTTCCCCSSCC-----------
T ss_pred HHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeee--eEEecC-CchhhhcceEEecCCH-------HH
Confidence 4689985 89999999999999999999999999 99999994 333331 2234678899999998 77
Q ss_pred Hh-ccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHh
Q 001371 479 NI-AYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES 557 (1091)
Q Consensus 479 NI-~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~IliLDE~tSaLD~~t 557 (1091)
|+ .++.+. .+.+........+.+.++. |+ |||||++|||||+.+|+|||||||||+ +
T Consensus 78 nl~~~~~~~--~~~~~~~~~~~~~~~~l~~---gl-------------Gq~qrv~lAraL~~~p~lllLDEPts~----~ 135 (208)
T 3b85_A 78 KIDPYLRPL--HDALRDMVEPEVIPKLMEA---GI-------------VEVAPLAYMRGRTLNDAFVILDEAQNT----T 135 (208)
T ss_dssp --CTTTHHH--HHHHTTTSCTTHHHHHHHT---TS-------------EEEEEGGGGTTCCBCSEEEEECSGGGC----C
T ss_pred HHHHHHHHH--HHHHHHhccHHHHHHHHHh---CC-------------chHHHHHHHHHHhcCCCEEEEeCCccc----c
Confidence 77 443210 0000000000112222222 21 999999999999999999999999999 8
Q ss_pred HHHHHHHHHHHcCCCeEEEEccCchhhhccCeEEEEeCCE
Q 001371 558 EKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGK 597 (1091)
Q Consensus 558 e~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~ 597 (1091)
.+.+.+.|+++.+++|+| |||+++.+. ++...+||.
T Consensus 136 ~~~l~~~l~~l~~g~tii-vtHd~~~~~---~~~~~~~G~ 171 (208)
T 3b85_A 136 PAQMKMFLTRLGFGSKMV-VTGDITQVD---LPGGQKSGL 171 (208)
T ss_dssp HHHHHHHHTTBCTTCEEE-EEEC---------------CC
T ss_pred HHHHHHHHHHhcCCCEEE-EECCHHHHh---CcCCCCCcH
Confidence 888888888764578888 999987654 444455553
No 75
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.92 E-value=9.3e-29 Score=263.17 Aligned_cols=166 Identities=15% Similarity=0.176 Sum_probs=125.4
Q ss_pred ccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCCh-HHHhhceeEEeccCcccc-----
Q 001371 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL-QWIRKKIGLVSQEPVLFT----- 473 (1091)
Q Consensus 400 ~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~-~~lr~~ia~V~Q~~~Lf~----- 473 (1091)
..|+||||+|++|++++|+||||||||||+++|+|++ | |+|.+ |.++.+.+. ...|+.++|++|++.+|.
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKN 86 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHT
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhc
Confidence 4799999999999999999999999999999999999 6 99999 888765533 235678999999876553
Q ss_pred ------ccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHH-----HHHhhcCCC
Q 001371 474 ------GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI-----ARAILKDPR 542 (1091)
Q Consensus 474 ------~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRial-----ARAll~~~~ 542 (1091)
+++++| .+|.+ ++++.++++... ...++ .+||||||||++| ||+++++|+
T Consensus 87 ~~~l~~~~~~~~-~~g~~---~~~i~~~l~~~~------------~~il~---~~lsggq~qR~~i~~~~~~~~ll~~~~ 147 (218)
T 1z6g_A 87 EDFLEYDNYANN-FYGTL---KSEYDKAKEQNK------------ICLFE---MNINGVKQLKKSTHIKNALYIFIKPPS 147 (218)
T ss_dssp TCEEEEEEETTE-EEEEE---HHHHHHHHHTTC------------EEEEE---ECHHHHHHHTTCSSCCSCEEEEEECSC
T ss_pred cchhhhhhcccc-cCCCc---HHHHHHHHhCCC------------cEEEE---ecHHHHHHHHHHhcCCCcEEEEEeCcC
Confidence 455566 44533 445666555422 22222 6799999999999 999999999
Q ss_pred EEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhccCeEEEEeC
Q 001371 543 ILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHR 595 (1091)
Q Consensus 543 IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~ 595 (1091)
+++|||||+++|.+++..|++.+.+..+++| ++| +..||.|+|+++
T Consensus 148 ~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~---~~h----~~~~d~iiv~~~ 193 (218)
T 1z6g_A 148 TDVLLSRLLTRNTENQEQIQKRMEQLNIELH---EAN----LLNFNLSIINDD 193 (218)
T ss_dssp HHHHHHHHHHTCCCCHHHHHHHHHHHHHHHH---HHT----TSCCSEEEECSS
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH---hhc----ccCCCEEEECCC
Confidence 9999999999999999999999988877777 788 688999998864
No 76
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.90 E-value=4.7e-25 Score=225.38 Aligned_cols=149 Identities=18% Similarity=0.219 Sum_probs=108.0
Q ss_pred ceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhceeEEeccCc--cccccHHHHhc
Q 001371 404 GFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPV--LFTGSIKDNIA 481 (1091)
Q Consensus 404 ~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~--Lf~~TIreNI~ 481 (1091)
|+||++++||+++|+||||||||||++++.+-+ .. ++.+.+| ++++|++. .+.++..+++.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~------~~--------~~~d~~~---g~~~~~~~~~~~~~~~~~~~~ 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPT------EV--------ISSDFCR---GLMSDDENDQTVTGAAFDVLH 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGG------GE--------EEHHHHH---HHHCSSTTCGGGHHHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCC------eE--------EccHHHH---HHhcCcccchhhHHHHHHHHH
Confidence 689999999999999999999999999965322 11 2233344 67788762 23333333221
Q ss_pred cCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhH---
Q 001371 482 YGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE--- 558 (1091)
Q Consensus 482 ~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~IliLDE~tSaLD~~te--- 558 (1091)
... ...+..|+.+.+... ...|||||||++||||+..+|++++|||||++||+.++
T Consensus 64 ------------~~~--------~~~~~~g~~~~~~~~-~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~ 122 (171)
T 4gp7_A 64 ------------YIV--------SKRLQLGKLTVVDAT-NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRT 122 (171)
T ss_dssp ------------HHH--------HHHHHTTCCEEEESC-CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCS
T ss_pred ------------HHH--------HHHHhCCCeEEEECC-CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhccc
Confidence 111 112234666666544 34699999999999999999999999999999999944
Q ss_pred -------------HHHHHHHHHHc-CCCeEEEEccCchhhhccCeE
Q 001371 559 -------------KVVQEALDRIM-VNRTTVIVAHRLSTVRNADMI 590 (1091)
Q Consensus 559 -------------~~i~~~l~~~~-~~~T~I~ItHrls~i~~aD~I 590 (1091)
+.+.+.|+++. +|.|+|+|||+++.+..++++
T Consensus 123 ~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~~~~ 168 (171)
T 4gp7_A 123 DRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEEVVFE 168 (171)
T ss_dssp SCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHHEEEE
T ss_pred CCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhhhhhc
Confidence 66777765542 489999999999998887765
No 77
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.90 E-value=1.3e-23 Score=240.51 Aligned_cols=83 Identities=25% Similarity=0.374 Sum_probs=75.8
Q ss_pred cCCCCCChHHHHHHHHHHHhh------cCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhhccCeE
Q 001371 518 EHGTQLSGGQKQRIAIARAIL------KDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMI 590 (1091)
Q Consensus 518 e~G~~LSGGQkQRialARAll------~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~aD~I 590 (1091)
....+||||||||++|||||. .+|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++....||+|
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~~ 354 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDRK 354 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSCE
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEE
Confidence 345679999999999999999 7999999999999999999999999998864 579999999999998899999
Q ss_pred EEEeCCEEee
Q 001371 591 AVIHRGKIVE 600 (1091)
Q Consensus 591 ivl~~G~Ive 600 (1091)
++|++|+|++
T Consensus 355 ~~l~~G~i~~ 364 (365)
T 3qf7_A 355 LRITGGVVVN 364 (365)
T ss_dssp EEEETTEEC-
T ss_pred EEEECCEEEe
Confidence 9999999975
No 78
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.90 E-value=1.9e-25 Score=228.99 Aligned_cols=147 Identities=17% Similarity=0.211 Sum_probs=111.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhceeEEeccCccccccHHHHhccCCCCCCHHHHH
Q 001371 414 TAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIR 493 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~ 493 (1091)
+++|+||+|||||||+++|+|++. |.++|.+..+......+++++|++|++ +.++|+. +.-.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~-----~~~~~~~-~~~~------- 63 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT-----EGKKKIF-SSKF------- 63 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET-----TCCEEEE-EETT-------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC-----cHHHHHH-Hhhc-------
Confidence 689999999999999999999995 567777665543225678999999987 3445542 1100
Q ss_pred HHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHH-----hhcCCCEEEeeC--CCCCCCHHhHHHHHHHHH
Q 001371 494 VATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA-----ILKDPRILLLDE--ATSALDAESEKVVQEALD 566 (1091)
Q Consensus 494 ~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARA-----ll~~~~IliLDE--~tSaLD~~te~~i~~~l~ 566 (1091)
++ .+..++..+.+||||||||++|||| ++.+|+++|||| ||+++|+...+.+.+.++
T Consensus 64 --------------~~--~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~ 127 (178)
T 1ye8_A 64 --------------FT--SKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMH 127 (178)
T ss_dssp --------------CC--CSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHT
T ss_pred --------------CC--ccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHh
Confidence 01 1245777888999999999999996 999999999999 999999999999988887
Q ss_pred HHcCCCeEEEEcc---Cchhhhc-cCeEEEEeCCEEee
Q 001371 567 RIMVNRTTVIVAH---RLSTVRN-ADMIAVIHRGKIVE 600 (1091)
Q Consensus 567 ~~~~~~T~I~ItH---rls~i~~-aD~Iivl~~G~Ive 600 (1091)
+ .+.|+|+++| ....+.. ||+ ++|+|.+
T Consensus 128 ~--~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 128 D--PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp C--TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred c--CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 6 4677999996 5566654 666 5677776
No 79
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.90 E-value=6.7e-26 Score=255.43 Aligned_cols=140 Identities=19% Similarity=0.196 Sum_probs=117.4
Q ss_pred EEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhceeEE
Q 001371 386 LRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLV 465 (1091)
Q Consensus 386 ~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia~V 465 (1091)
|+|++| | .++++++||++++|+.++|+||||||||||+++|+|+++|++|.|.++|.+ ++....+|+.++++
T Consensus 151 ~~~v~f-y-----~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~--e~~~~~~~~~i~~~ 222 (330)
T 2pt7_A 151 YNLLDN-K-----EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTE--EIVFKHHKNYTQLF 222 (330)
T ss_dssp TTTSTT-H-----HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSC--CCCCSSCSSEEEEE
T ss_pred cCchhh-H-----HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCee--ccccccchhEEEEE
Confidence 566666 5 248999999999999999999999999999999999999999999999975 33333345566665
Q ss_pred eccCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCCEEE
Q 001371 466 SQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILL 545 (1091)
Q Consensus 466 ~Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~Ili 545 (1091)
+| |||+||++|||||.++|+++|
T Consensus 223 ~g---------------------------------------------------------gg~~~r~~la~aL~~~p~ili 245 (330)
T 2pt7_A 223 FG---------------------------------------------------------GNITSADCLKSCLRMRPDRII 245 (330)
T ss_dssp CB---------------------------------------------------------TTBCHHHHHHHHTTSCCSEEE
T ss_pred eC---------------------------------------------------------CChhHHHHHHHHhhhCCCEEE
Confidence 40 899999999999999999999
Q ss_pred eeCCCCCCCHHhHHHHHHHHHHHcCCC-eEEEEccCchhhhccCeEEEEeCCE
Q 001371 546 LDEATSALDAESEKVVQEALDRIMVNR-TTVIVAHRLSTVRNADMIAVIHRGK 597 (1091)
Q Consensus 546 LDE~tSaLD~~te~~i~~~l~~~~~~~-T~I~ItHrls~i~~aD~Iivl~~G~ 597 (1091)
|||||+. .+.+.|+.+..++ |+|+++|+++....||+|++|++|+
T Consensus 246 ldE~~~~-------e~~~~l~~~~~g~~tvi~t~H~~~~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 246 LGELRSS-------EAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSN 291 (330)
T ss_dssp ECCCCST-------HHHHHHHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHTS
T ss_pred EcCCChH-------HHHHHHHHHhcCCCEEEEEEcccHHHHHhhhheehhcCC
Confidence 9999992 2445566655555 7999999999989999999998885
No 80
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.88 E-value=3.5e-25 Score=257.93 Aligned_cols=195 Identities=15% Similarity=0.143 Sum_probs=159.3
Q ss_pred CcEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCc---cccCCC----
Q 001371 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGI---NLKEFQ---- 454 (1091)
Q Consensus 382 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~---~i~~~~---- 454 (1091)
..++++|+++.|+. +..+|+++ |+|++||+++|+||||||||||+++|.|+++|+.|.|.++|. +++++.
T Consensus 130 ~~l~~~~v~~~~~t--g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~ 206 (438)
T 2dpy_A 130 NPLQRTPIEHVLDT--GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENIL 206 (438)
T ss_dssp CTTTSCCCCSBCCC--SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTT
T ss_pred CceEEeccceecCC--CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhc
Confidence 45889999999963 35799999 999999999999999999999999999999999999999998 665542
Q ss_pred -hHHHhhceeEEecc--CccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHH
Q 001371 455 -LQWIRKKIGLVSQE--PVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRI 531 (1091)
Q Consensus 455 -~~~lr~~ia~V~Q~--~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRi 531 (1091)
...+++.++||+|+ +...+-|+.+|+.+.. ++... +...+. .+=+...+||||| ||+
T Consensus 207 ~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~a------e~~~~-~~~~v~------------~~ld~l~~lS~g~-qrv 266 (438)
T 2dpy_A 207 GPDGRARSVVIAAPADVSPLLRMQGAAYATRIA------EDFRD-RGQHVL------------LIMDSLTRYAMAQ-REI 266 (438)
T ss_dssp HHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHH------HHHHT-TTCEEE------------EEEECHHHHHHHH-HHH
T ss_pred cccccCceEEEEECCCCCHHHHHHHHHHHHHHH------HHHHh-CCCCHH------------HHHHhHHHHHHHH-HHH
Confidence 35688899999994 3455679999987632 22110 000111 1113356799999 999
Q ss_pred HHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC-----CC-----eEEEEccCchhhhccCeEEEEeCCEEeee
Q 001371 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV-----NR-----TTVIVAHRLSTVRNADMIAVIHRGKIVEK 601 (1091)
Q Consensus 532 alARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~-----~~-----T~I~ItHrls~i~~aD~Iivl~~G~Ive~ 601 (1091)
+|| +.+|++ |++||+.+...+.+.+.++.+ |+ |++++||+++ ...||++++|.||+|+..
T Consensus 267 slA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl~ 336 (438)
T 2dpy_A 267 ALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVLS 336 (438)
T ss_dssp HHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEEC
T ss_pred HHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEEe
Confidence 999 899998 999999999999999988754 43 9999999999 788999999999999999
Q ss_pred cChhHHhc
Q 001371 602 GTHSKLVE 609 (1091)
Q Consensus 602 Gt~~eL~~ 609 (1091)
|++.++..
T Consensus 337 ~~~~~~~~ 344 (438)
T 2dpy_A 337 RRLAEAGH 344 (438)
T ss_dssp HHHHHTTC
T ss_pred CCHHHccC
Confidence 99998864
No 81
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.87 E-value=1.1e-24 Score=250.09 Aligned_cols=167 Identities=16% Similarity=0.174 Sum_probs=131.5
Q ss_pred CccccceeEEeeCCC--------------------EEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHH
Q 001371 399 EQIFSGFSISISSGT--------------------TAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI 458 (1091)
Q Consensus 399 ~~vL~~isl~i~~G~--------------------~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~l 458 (1091)
+.+|+||||++++|+ .+||+||+|||||||+++|+|+++|++|+|.++|.++.
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t------- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT------- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------
Confidence 368999999999999 99999999999999999999999999999999997653
Q ss_pred hhceeEEeccCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChH--HHHHHHHHHH
Q 001371 459 RKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGG--QKQRIAIARA 536 (1091)
Q Consensus 459 r~~ia~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGG--QkQRialARA 536 (1091)
| .+|++|++...+-|++||+.++.+. +++.+.++..++.+ ++..+ . |||| ||||++||||
T Consensus 109 ~--~~~v~q~~~~~~ltv~D~~g~~~~~---~~~~~~L~~~~L~~--------~~~~~----~-lS~G~~~kqrv~la~a 170 (413)
T 1tq4_A 109 M--ERHPYKHPNIPNVVFWDLPGIGSTN---FPPDTYLEKMKFYE--------YDFFI----I-ISATRFKKNDIDIAKA 170 (413)
T ss_dssp C--CCEEEECSSCTTEEEEECCCGGGSS---CCHHHHHHHTTGGG--------CSEEE----E-EESSCCCHHHHHHHHH
T ss_pred e--eEEeccccccCCeeehHhhcccchH---HHHHHHHHHcCCCc--------cCCeE----E-eCCCCccHHHHHHHHH
Confidence 2 2899999865578999999887542 34556666665432 12222 2 8999 9999999999
Q ss_pred hhc----------CCCEEEeeCCCCCCCHHhHHHHHHHHHHHc------C----CCeEEEEccCchh--hhc-cCeE
Q 001371 537 ILK----------DPRILLLDEATSALDAESEKVVQEALDRIM------V----NRTTVIVAHRLST--VRN-ADMI 590 (1091)
Q Consensus 537 ll~----------~~~IliLDE~tSaLD~~te~~i~~~l~~~~------~----~~T~I~ItHrls~--i~~-aD~I 590 (1091)
+.+ +||+++|||||++||+.+++.+.+.|+++. . .+++++.||.++- +.. ||+|
T Consensus 171 L~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 171 ISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp HHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred HHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 999 999999999999999999888888877652 1 2456667898764 333 5544
No 82
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.87 E-value=5.9e-22 Score=245.17 Aligned_cols=95 Identities=23% Similarity=0.395 Sum_probs=87.0
Q ss_pred cccCCCCCChHHHHHHHHHHHhhcCC--CEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhhccCeEEE
Q 001371 516 VGEHGTQLSGGQKQRIAIARAILKDP--RILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIAV 592 (1091)
Q Consensus 516 vge~G~~LSGGQkQRialARAll~~~--~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~aD~Iiv 592 (1091)
.+..-.+|||||||||+|||||.++| ++|||||||++||++..+.+.+.|+++. .++|+|+|+|++..+..||+|++
T Consensus 373 l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl~~l~~aD~ii~ 452 (842)
T 2vf7_A 373 LDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDLDVIRRADWLVD 452 (842)
T ss_dssp TTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHTTCSEEEE
T ss_pred ccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEE
Confidence 45556789999999999999999999 4999999999999999998988887765 47999999999999999999999
Q ss_pred E------eCCEEeeecChhHHhcC
Q 001371 593 I------HRGKIVEKGTHSKLVED 610 (1091)
Q Consensus 593 l------~~G~Ive~Gt~~eL~~~ 610 (1091)
| ++|+++..|+++++.+.
T Consensus 453 lgpgaG~~~G~iv~~g~~~~~~~~ 476 (842)
T 2vf7_A 453 VGPEAGEKGGEILYSGPPEGLKHV 476 (842)
T ss_dssp ECSSSGGGCCSEEEEECGGGGGGC
T ss_pred eCCCcccCCCEEEEecCHHHHHhc
Confidence 9 79999999999999875
No 83
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.86 E-value=4.9e-24 Score=216.07 Aligned_cols=111 Identities=20% Similarity=0.212 Sum_probs=90.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHhccCCCC---CcEEEECCccccCCC---hHHHh-hcee----EEeccCccccccHHHHhc
Q 001371 413 TTAALVGQSGSGKSTVISLIERFYDPQ---AGEVLIDGINLKEFQ---LQWIR-KKIG----LVSQEPVLFTGSIKDNIA 481 (1091)
Q Consensus 413 ~~vaIVG~sGsGKSTLl~ll~g~~~~~---~G~I~idg~~i~~~~---~~~lr-~~ia----~V~Q~~~Lf~~TIreNI~ 481 (1091)
++++|||+||||||||+++|+|+|+|+ .|.|.+||.++.+++ .+++| ++++ +++|++++| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~--- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR--- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence 689999999999999999999999998 899999999998887 77888 5788 899999988 322
Q ss_pred cCCCCCCHHHHHHHHHHcccHHHHhh-CCCCcccccccCCCCCChHHHHHHHHHHHhhcCCCEE
Q 001371 482 YGKDDATTEEIRVATELANAAKFIDK-LPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRIL 544 (1091)
Q Consensus 482 ~g~~~~~~~~i~~a~~~a~l~~~i~~-lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~Il 544 (1091)
+ ++ +. .++++++++. || |+||.|+|+ |||||||||+||||++++|+|.
T Consensus 77 -~----~~-~~-----~a~l~~~i~~~l~-g~dt~i~Eg---lSgGq~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 77 -V----SE-EE-----GNDLDWIYERYLS-DYDLVITEG---FSKAGKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp -C----CH-HH-----HTCHHHHHHHHTT-TCSEEEEES---CGGGCCCEEEECSSGGGGGGGC
T ss_pred -C----Ch-hh-----hhCHHHHHHhhCC-CCCEEEECC---cCCCCCcEEEEEecccCCCccC
Confidence 1 12 21 7899999999 99 999999995 9999999999999999999874
No 84
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.85 E-value=1.8e-24 Score=235.43 Aligned_cols=182 Identities=15% Similarity=0.175 Sum_probs=151.6
Q ss_pred EEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCC-CcEEEECCccccCCChHHHhhcee
Q 001371 385 ELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ-AGEVLIDGINLKEFQLQWIRKKIG 463 (1091)
Q Consensus 385 ~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~-~G~I~idg~~i~~~~~~~lr~~ia 463 (1091)
+++|++|. ++|+|+| +++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++..+. +..++
T Consensus 7 ~l~~l~~~-------~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~----~~~~~ 73 (261)
T 2eyu_A 7 EFKKLGLP-------DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF----KHKKS 73 (261)
T ss_dssp CGGGSSCC-------THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC----CCSSS
T ss_pred ChHHCCCH-------HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec----CCcce
Confidence 45566542 4899999 9999999999999999999999999999998 999999999886553 44678
Q ss_pred EEec-----cCccccccHHHHhccCCCCC-------CHHHHHHHHHHccc-----------------HHHH---------
Q 001371 464 LVSQ-----EPVLFTGSIKDNIAYGKDDA-------TTEEIRVATELANA-----------------AKFI--------- 505 (1091)
Q Consensus 464 ~V~Q-----~~~Lf~~TIreNI~~g~~~~-------~~~~i~~a~~~a~l-----------------~~~i--------- 505 (1091)
+++| ++..|..+|+.++.. +|+. +.+.++.+++.+.. +..+
T Consensus 74 ~v~q~~~gl~~~~l~~~la~aL~~-~p~illlDEp~D~~~~~~~l~~~~~g~~vl~t~H~~~~~~~~dri~~l~~~~~~~ 152 (261)
T 2eyu_A 74 IVNQREVGEDTKSFADALRAALRE-DPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQE 152 (261)
T ss_dssp EEEEEEBTTTBSCHHHHHHHHHHH-CCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSHHHHHHHHHHTSCGGGHH
T ss_pred eeeHHHhCCCHHHHHHHHHHHHhh-CCCEEEeCCCCCHHHHHHHHHHHccCCEEEEEeCcchHHHHHHHHhhhcCccccc
Confidence 8999 667788899999886 4554 77777776665421 1211
Q ss_pred ---hhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCCE--EEeeCCCCCCCHHh---------HHHHHHHHHHHcCC
Q 001371 506 ---DKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRI--LLLDEATSALDAES---------EKVVQEALDRIMVN 571 (1091)
Q Consensus 506 ---~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~I--liLDE~tSaLD~~t---------e~~i~~~l~~~~~~ 571 (1091)
..+++++++.|++++..+||| ||+++||+++.+|+| +|+||+||++|... +..++++++...+|
T Consensus 153 ~~~~~l~~~l~~vi~qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g 230 (261)
T 2eyu_A 153 QVRIVLSFILQGIISQRLLPKIGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQG 230 (261)
T ss_dssp HHHHHHHHHEEEEEEEEEECCSSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHHHHHHSCSCTTEECHHHHHHHHHHTT
T ss_pred hHHHHHHHHhhEEEEEEeEecCCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHcC
Confidence 235678999999999999999 999999999999999 99999999999863 45789999999999
Q ss_pred CeEEEEccCch
Q 001371 572 RTTVIVAHRLS 582 (1091)
Q Consensus 572 ~T~I~ItHrls 582 (1091)
+|.+.++||++
T Consensus 231 ~t~~~~a~r~~ 241 (261)
T 2eyu_A 231 LITLEDAMEAS 241 (261)
T ss_dssp SSCHHHHHHHC
T ss_pred CCCHHHHHHHh
Confidence 99999999987
No 85
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.84 E-value=5.1e-24 Score=244.12 Aligned_cols=175 Identities=15% Similarity=0.190 Sum_probs=149.0
Q ss_pred ccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCC-CcEEEECCccccCCChHHHhhceeEEec-----cCcccc
Q 001371 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ-AGEVLIDGINLKEFQLQWIRKKIGLVSQ-----EPVLFT 473 (1091)
Q Consensus 400 ~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~-~G~I~idg~~i~~~~~~~lr~~ia~V~Q-----~~~Lf~ 473 (1091)
++|++++ +++|+.++|+|||||||||++++|+|+++|+ +|+|.+.|.++. + .+|+.++||+| ++..|+
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q~~~g~~~~~~~ 199 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQREVGEDTKSFA 199 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEEEEBTTTBSCSH
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEeeecCCCHHHHH
Confidence 4677765 8999999999999999999999999999998 899988776664 2 36778999999 899999
Q ss_pred ccHHHHhccCCCCC-------CHHHHHHHHHHcccH-----------------HHH------------hhCCCCcccccc
Q 001371 474 GSIKDNIAYGKDDA-------TTEEIRVATELANAA-----------------KFI------------DKLPQGIDTLVG 517 (1091)
Q Consensus 474 ~TIreNI~~g~~~~-------~~~~i~~a~~~a~l~-----------------~~i------------~~lp~G~~T~vg 517 (1091)
++|++|+.. +|+. +++.++.+++.++.. ..+ ..+++++++.|+
T Consensus 200 ~~l~~~L~~-~pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l~~~~~~~~~~~~l~~~l~~vv~ 278 (372)
T 2ewv_A 200 DALRAALRE-DPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIIS 278 (372)
T ss_dssp HHHHHHTTS-CCSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHTSCTTSHHHHHHHHHHSCCEEEE
T ss_pred HHHHHHhhh-CcCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchHHHHHHHHHHhcCcccchhHHHHHHHhhhEEEE
Confidence 999999997 5666 788888888876531 221 224679999999
Q ss_pred cCCCCCChHHHHHHHHHHHhhcCCCE--EEeeCCCCCCCHH----h-----HHHHHHHHHHHcCCCeEEEEccCchh
Q 001371 518 EHGTQLSGGQKQRIAIARAILKDPRI--LLLDEATSALDAE----S-----EKVVQEALDRIMVNRTTVIVAHRLST 583 (1091)
Q Consensus 518 e~G~~LSGGQkQRialARAll~~~~I--liLDE~tSaLD~~----t-----e~~i~~~l~~~~~~~T~I~ItHrls~ 583 (1091)
+++..+||| ||+++||+++.+|+| +|+||+||+||.. + +..++++++...+|+|++.++||++.
T Consensus 279 qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~~ 353 (372)
T 2ewv_A 279 QRLLPKIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEASP 353 (372)
T ss_dssp EEEEECSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTTTSSSCTTTTTSSCS
T ss_pred EEeEecCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHCCCCCHHHHHHHcC
Confidence 999999999 899999999999999 9999999999975 3 44688889888899999999999974
No 86
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.84 E-value=1.6e-23 Score=233.71 Aligned_cols=141 Identities=16% Similarity=0.224 Sum_probs=114.4
Q ss_pred CCCcEEEEeEEEECCCCCCCccccceeEE-----------------------eeCCCEEEEEcCCCCcHHHHHHHHhccC
Q 001371 380 IRGDIELRDVYFSYPARPNEQIFSGFSIS-----------------------ISSGTTAALVGQSGSGKSTVISLIERFY 436 (1091)
Q Consensus 380 ~~~~I~~~~vsf~Y~~~~~~~vL~~isl~-----------------------i~~G~~vaIVG~sGsGKSTLl~ll~g~~ 436 (1091)
..+.|+++||++.|. |+++++++. +++|+++||+||||||||||+++|.|++
T Consensus 40 ~~~~i~~~~v~~~y~-----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 40 LGEQIDLLEVEEVYL-----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp TTCCCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEeeehhhhhh-----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 345799999999993 578887775 8999999999999999999999999999
Q ss_pred CCCCcEEEECCccccCCChHHHhhceeEEeccCccccccHHHHhccCC----CC-CCHHHHHHHHHHcccHHHHhhCCCC
Q 001371 437 DPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGK----DD-ATTEEIRVATELANAAKFIDKLPQG 511 (1091)
Q Consensus 437 ~~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~----~~-~~~~~i~~a~~~a~l~~~i~~lp~G 511 (1091)
+|..|. .++++|+||++++..|++||+.+.. |+ .+.+.+. ++++.+..|
T Consensus 115 ~~~~G~-----------------~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~---------~~L~~l~~~ 168 (312)
T 3aez_A 115 ARWDHH-----------------PRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALM---------RFVTSVKSG 168 (312)
T ss_dssp HTSTTC-----------------CCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHH---------HHHHHHHTT
T ss_pred cccCCC-----------------CeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHH---------HHHHHhCCC
Confidence 998664 3799999999999999999997532 21 1223333 334444445
Q ss_pred cc-cccccCCCCCChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCH
Q 001371 512 ID-TLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555 (1091)
Q Consensus 512 ~~-T~vge~G~~LSGGQkQRialARAll~~~~IliLDE~tSaLD~ 555 (1091)
.. ..+ ..||||||||+++|||++.+|+|+|||||++.+|+
T Consensus 169 ~~~~~~----~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 169 SDYACA----PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp CSCEEE----EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred cccCCc----ccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 43 444 46999999999999999999999999999999986
No 87
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.83 E-value=2e-20 Score=211.69 Aligned_cols=82 Identities=18% Similarity=0.247 Sum_probs=75.7
Q ss_pred CCChHHHHHHHHHHHhh---------cCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhccCeEEE
Q 001371 522 QLSGGQKQRIAIARAIL---------KDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAV 592 (1091)
Q Consensus 522 ~LSGGQkQRialARAll---------~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iiv 592 (1091)
.||||||||++|||+|. .+|+|||||||||+||+...+.+.+.|.++. +|+|++|| ++. .||+|++
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~--qt~i~~th-~~~--~~~~i~~ 339 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP--QAIVTGTE-LAP--GAALTLR 339 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS--EEEEEESS-CCT--TCSEEEE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC--cEEEEEEe-ccc--cCCEEEE
Confidence 59999999999999999 8999999999999999999999999998753 89999999 454 8999999
Q ss_pred EeCCEEeeecChhHHh
Q 001371 593 IHRGKIVEKGTHSKLV 608 (1091)
Q Consensus 593 l~~G~Ive~Gt~~eL~ 608 (1091)
|++|+|++.|+++++.
T Consensus 340 l~~G~i~~~g~~~~~~ 355 (359)
T 2o5v_A 340 AQAGRFTPVADEEMQA 355 (359)
T ss_dssp EETTEEEECCCTTTSC
T ss_pred EECCEEEecCCHHHHh
Confidence 9999999999999873
No 88
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.83 E-value=1.4e-22 Score=221.82 Aligned_cols=147 Identities=18% Similarity=0.177 Sum_probs=96.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhceeEEeccCccccc-cHHHHhccCCCCCC---H
Q 001371 414 TAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYGKDDAT---T 489 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~-TIreNI~~g~~~~~---~ 489 (1091)
.+|||||||||||||+++|+|...|++|+|.++|.++.. ...++.++|++|++.++.. ||.||+.||..... .
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~---~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK---TVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCC---CCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc---ceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence 589999999999999999999999999999999988743 3346789999999988765 99999999864222 2
Q ss_pred HHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc
Q 001371 490 EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM 569 (1091)
Q Consensus 490 ~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~ 569 (1091)
+.+.+.++ .++...++ ..||||||||+++|||+.. +++||||+++||+...+ +.+.+ .
T Consensus 81 ~~i~~~~~----~~~~~~~~-----------~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~~-~l~~L---~ 138 (270)
T 3sop_A 81 EPIEKYIN----EQYEKFLK-----------EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDLE-FMKHL---S 138 (270)
T ss_dssp HHHHHHHH----HHHHHHHH-----------HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHHH-HHHHH---H
T ss_pred HHHHHHHH----HHHHhhhH-----------HhcCcccchhhhhheeeee---eEEEecCCCcCCHHHHH-HHHHH---H
Confidence 23333333 23333222 2599999999999999875 99999999999987632 33333 3
Q ss_pred CCCeEEEEccCchhhh
Q 001371 570 VNRTTVIVAHRLSTVR 585 (1091)
Q Consensus 570 ~~~T~I~ItHrls~i~ 585 (1091)
+..++|+|.|+..++.
T Consensus 139 ~~~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 139 KVVNIIPVIAKADTMT 154 (270)
T ss_dssp TTSEEEEEETTGGGSC
T ss_pred hcCcEEEEEeccccCC
Confidence 3489999999987763
No 89
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.82 E-value=2.5e-22 Score=223.03 Aligned_cols=174 Identities=17% Similarity=0.237 Sum_probs=127.4
Q ss_pred ccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCC----hHHH--hhceeEEeccCc-ccc-
Q 001371 402 FSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ----LQWI--RKKIGLVSQEPV-LFT- 473 (1091)
Q Consensus 402 L~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~----~~~l--r~~ia~V~Q~~~-Lf~- 473 (1091)
++++||++++|+.++||||+||||||+++.|.|++.|++|+|.++|.|+.... ++.+ |..|+||+|++. ++.
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~ 169 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 169 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHH
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHH
Confidence 34678899999999999999999999999999999999999999999987653 2344 457999999987 654
Q ss_pred ccHHHHhccCCC-CCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCC--EEEeeCCC
Q 001371 474 GSIKDNIAYGKD-DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR--ILLLDEAT 550 (1091)
Q Consensus 474 ~TIreNI~~g~~-~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~--IliLDE~t 550 (1091)
.|++||+.++.. ..+ ...++.+++. +-.+..++ .|| |||++||||+..+|+ +|+|| ||
T Consensus 170 ~~v~e~l~~~~~~~~d----~~lldt~gl~-------~~~~~~~~----eLS---kqr~~iaral~~~P~e~lLvLD-pt 230 (302)
T 3b9q_A 170 TVLSKAVKRGKEEGYD----VVLCDTSGRL-------HTNYSLME----ELI---ACKKAVGKIVSGAPNEILLVLD-GN 230 (302)
T ss_dssp HHHHHHHHHHHHTTCS----EEEECCCCCS-------SCCHHHHH----HHH---HHHHHHHTTSTTCCSEEEEEEE-GG
T ss_pred HHHHHHHHHHHHcCCc----chHHhcCCCC-------cchhHHHH----HHH---HHHHHHHHhhccCCCeeEEEEe-CC
Confidence 589999976421 111 0111222221 11122233 388 999999999999999 99999 99
Q ss_pred CCCCHHhHHHHHHHHHHHcCCCeEEEEcc---------Cchhhh-ccCeEEEEeCCEE
Q 001371 551 SALDAESEKVVQEALDRIMVNRTTVIVAH---------RLSTVR-NADMIAVIHRGKI 598 (1091)
Q Consensus 551 SaLD~~te~~i~~~l~~~~~~~T~I~ItH---------rls~i~-~aD~Iivl~~G~I 598 (1091)
+++|+.... +.+.+ ..+.|+|++|| .++.+. ..+.|.++.+|+.
T Consensus 231 sglD~~~~~---~~~~~-~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 231 TGLNMLPQA---REFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp GGGGGHHHH---HHHHH-HTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CCcCHHHHH---HHHHH-hcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 999998542 22322 24789999999 444443 3678999999864
No 90
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.81 E-value=4.6e-23 Score=215.84 Aligned_cols=159 Identities=18% Similarity=0.309 Sum_probs=127.6
Q ss_pred eeCCCEEEEEcCCCCcHHHHHHHHhccCC-------------CCCcEEEECCccccCCChHHHhhceeEEeccCcccccc
Q 001371 409 ISSGTTAALVGQSGSGKSTVISLIERFYD-------------PQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGS 475 (1091)
Q Consensus 409 i~~G~~vaIVG~sGsGKSTLl~ll~g~~~-------------~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~T 475 (1091)
+++|++++||||||||||||+++|+|+++ |..|+ ++|.++..++.+.+|+.+ +|++++|+++
T Consensus 1 m~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~~~ 75 (198)
T 1lvg_A 1 MAGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEHAE 75 (198)
T ss_dssp ----CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEeeee
Confidence 36899999999999999999999999986 78897 699999999999999886 7999999999
Q ss_pred HHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHH-HhhcCCCEEEeeCCCCCCC
Q 001371 476 IKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR-AILKDPRILLLDEATSALD 554 (1091)
Q Consensus 476 IreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialAR-All~~~~IliLDE~tSaLD 554 (1091)
+++|+ +|. ++++++++++.....-+ ...|+|+++.... |+ .|| +++++|++++|||+|+++|
T Consensus 76 ~~~n~-~g~---~~~~i~~~~~~~~~~~~-~~~~~g~~~~~~~-----------~~-~~~~~~l~~p~~~ilde~~~~~d 138 (198)
T 1lvg_A 76 FSGNL-YGT---SKEAVRAVQAMNRICVL-DVDLQGVRSIKKT-----------DL-CPIYIFVQPPSLDVLEQRLRLRN 138 (198)
T ss_dssp ETTEE-EEE---EHHHHHHHHHTTCEEEE-ECCHHHHHHHTTS-----------SC-CCEEEEEECSCHHHHHHHHHHHT
T ss_pred ecCcc-CCC---CHHHHHHHHHcCCcEEE-ECCHHHHHHHHhc-----------CC-CcEEEEEeCCCHHHHHHHHHhcC
Confidence 99998 774 57888888876322111 2245677765431 22 677 8999999999999999999
Q ss_pred HHhHHHHHHHHHHHcCCCeEEEEccCchhhhccCeEEEEeC
Q 001371 555 AESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHR 595 (1091)
Q Consensus 555 ~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~ 595 (1091)
.++|+.|++.|.+..++ +.++| ++ ..+|+|+|+++
T Consensus 139 ~~~e~~i~~~l~~~~~~---~~~a~--~~-~~~D~iivnd~ 173 (198)
T 1lvg_A 139 TETEESLAKRLAAARTD---MESSK--EP-GLFDLVIINDD 173 (198)
T ss_dssp CSCHHHHHHHHHHHHHH---TTGGG--ST-TTCSEEEECSS
T ss_pred CCCHHHHHHHHHHHHHH---HHHhh--cc-CCceEEEECCC
Confidence 99999999999877654 46678 55 88999999875
No 91
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.80 E-value=1.5e-21 Score=220.27 Aligned_cols=173 Identities=17% Similarity=0.245 Sum_probs=128.0
Q ss_pred cceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCC----hHHH--hhceeEEeccCc-cc-cc
Q 001371 403 SGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ----LQWI--RKKIGLVSQEPV-LF-TG 474 (1091)
Q Consensus 403 ~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~----~~~l--r~~ia~V~Q~~~-Lf-~~ 474 (1091)
..+||++++|++++||||+||||||+++.|.|++.|++|+|.++|.|+.... ++.+ |..|+||+|++. ++ ..
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 3578889999999999999999999999999999999999999999987653 2333 567999999987 55 46
Q ss_pred cHHHHhccCCC-CCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCC--EEEeeCCCC
Q 001371 475 SIKDNIAYGKD-DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR--ILLLDEATS 551 (1091)
Q Consensus 475 TIreNI~~g~~-~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~--IliLDE~tS 551 (1091)
|++|||.++.. ..+ ...++.+++. +-.+..++ .|| |||++||||+..+|+ +|+|| ||+
T Consensus 228 tv~e~l~~~~~~~~d----~~lldt~Gl~-------~~~~~~~~----eLS---kqr~~iaral~~~P~e~lLvLD-ptt 288 (359)
T 2og2_A 228 VLSKAVKRGKEEGYD----VVLCDTSGRL-------HTNYSLME----ELI---ACKKAVGKIVSGAPNEILLVLD-GNT 288 (359)
T ss_dssp HHHHHHHHHHHTTCS----EEEEECCCCS-------SCCHHHHH----HHH---HHHHHHHHHSTTCCSEEEEEEE-GGG
T ss_pred hHHHHHHHHHhCCCH----HHHHHhcCCC-------hhhhhHHH----HHH---HHHHHHHHHHhcCCCceEEEEc-CCC
Confidence 99999986531 111 0111222221 11122222 378 999999999999999 99999 999
Q ss_pred CCCHHhHHHHHHHHHHHcCCCeEEEEcc---------Cchhhh-ccCeEEEEeCCEE
Q 001371 552 ALDAESEKVVQEALDRIMVNRTTVIVAH---------RLSTVR-NADMIAVIHRGKI 598 (1091)
Q Consensus 552 aLD~~te~~i~~~l~~~~~~~T~I~ItH---------rls~i~-~aD~Iivl~~G~I 598 (1091)
++|+.+.. +.+.+ ..+.|+|++|| .++.+. ..+.|..+..|+.
T Consensus 289 glD~~~~~---~~~~~-~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 289 GLNMLPQA---REFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp GGGGHHHH---HHHHH-HTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CCCHHHHH---HHHHH-hcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 99998553 12222 23789999999 344443 4678999988864
No 92
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.80 E-value=7.9e-22 Score=203.62 Aligned_cols=159 Identities=17% Similarity=0.232 Sum_probs=123.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhceeEEeccCccccccHHHHhccCCCCCCHHH
Q 001371 412 GTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEE 491 (1091)
Q Consensus 412 G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~~~~~~~ 491 (1091)
|++++|+||+|||||||+++|+|+++ ++| |.+||.++.++. .++++++|++|+. +++ ++|+.--. ...
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~--~~~~~ig~~~~~~---~g~-~~~l~~~~--~~~-- 68 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVR--QGGRRIGFDVVTL---SGT-RGPLSRVG--LEP-- 68 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEE--TTSSEEEEEEEET---TSC-EEEEEECC--CCC--
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhH--hhhceEEEEEEec---ccc-eehhhccc--ccC--
Confidence 78999999999999999999999999 999 999999886654 5788999999986 443 34433110 000
Q ss_pred HHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHH-HHHH---HhhcCCCEEEeeC--CCCCCCHHhHHHHHHHH
Q 001371 492 IRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRI-AIAR---AILKDPRILLLDE--ATSALDAESEKVVQEAL 565 (1091)
Q Consensus 492 i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRi-alAR---All~~~~IliLDE--~tSaLD~~te~~i~~~l 565 (1091)
-+...+..+|+.|..+|||||+++ +|+| |+.++|+|||||| ||..+|....+.+.+.+
T Consensus 69 ----------------~~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l 132 (189)
T 2i3b_A 69 ----------------PPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTL 132 (189)
T ss_dssp ----------------CSSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHH
T ss_pred ----------------CccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHH
Confidence 011134589999999999999999 6666 7899999999999 88888888766776666
Q ss_pred HHHcCCCeEEE--Ec--cCchhhhccCeEEEEeCCEEeeec
Q 001371 566 DRIMVNRTTVI--VA--HRLSTVRNADMIAVIHRGKIVEKG 602 (1091)
Q Consensus 566 ~~~~~~~T~I~--It--Hrls~i~~aD~Iivl~~G~Ive~G 602 (1091)
++ .+|+|+ ++ |+.+ +..+|+|..+++|+|++-.
T Consensus 133 ~~---~~~~ilgti~vsh~~~-~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 133 ST---PGTIILGTIPVPKGKP-LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp HC---SSCCEEEECCCCCSSC-CTTHHHHHTTCCSEEEECC
T ss_pred hC---CCcEEEEEeecCCCCc-hHHHHHHeecCCcEEEEeC
Confidence 53 456664 44 9876 5678899999999999753
No 93
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.79 E-value=1.1e-21 Score=206.95 Aligned_cols=168 Identities=17% Similarity=0.171 Sum_probs=109.3
Q ss_pred CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCCh-HHHhhceeEEeccCccccc-c
Q 001371 398 NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL-QWIRKKIGLVSQEPVLFTG-S 475 (1091)
Q Consensus 398 ~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~-~~lr~~ia~V~Q~~~Lf~~-T 475 (1091)
..++|+| .+|++|++++|+||||||||||+++|+|+++ .|.+++ ++...+. ...|+.++|++|++.+|.. |
T Consensus 8 ~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~----~i~~~~-~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 80 (207)
T 1znw_A 8 TKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP----NLHFSV-SATTRAPRPGEVDGVDYHFIDPTRFQQLI 80 (207)
T ss_dssp -------------CCCEEEEECSTTSSHHHHHHHHHHHST----TCEECC-CEESSCCCTTCCBTTTBEECCHHHHHHHH
T ss_pred CCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC----ceEEcc-cccccCCcccccCCCeeEecCHHHHHHHH
Confidence 3578999 7999999999999999999999999999996 344543 2222111 2235689999999988764 6
Q ss_pred HHHHhcc-----CC-C--CCCHHHHHHHH----------HHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHh
Q 001371 476 IKDNIAY-----GK-D--DATTEEIRVAT----------ELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1091)
Q Consensus 476 IreNI~~-----g~-~--~~~~~~i~~a~----------~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAl 537 (1091)
+++|+.. ++ . ..+.+++.+.+ +..++.+.....|. .|| |+
T Consensus 81 ~~~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----------~lS-----------~l 138 (207)
T 1znw_A 81 DQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPE-----------AVT-----------VF 138 (207)
T ss_dssp HTTCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTT-----------SEE-----------EE
T ss_pred hcCCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCC-----------cEE-----------EE
Confidence 6776632 10 0 01233333332 23334333333332 233 89
Q ss_pred hcCCCEEEeeCCCCCC----CHHhHHHHHHHHHHHc--CCCeEEEEccCchhhh-ccCeEEEEe
Q 001371 538 LKDPRILLLDEATSAL----DAESEKVVQEALDRIM--VNRTTVIVAHRLSTVR-NADMIAVIH 594 (1091)
Q Consensus 538 l~~~~IliLDE~tSaL----D~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~-~aD~Iivl~ 594 (1091)
+.+|++++|||||+++ |+...+.+.+.++++. .+.|+|+|||.++.+. .||+|++|.
T Consensus 139 ~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 139 LAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp EECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred EECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 9999999999999998 6678888888887764 4789999999999875 599999984
No 94
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.78 E-value=1e-20 Score=213.83 Aligned_cols=195 Identities=15% Similarity=0.203 Sum_probs=150.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCC-------Ch
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEF-------QL 455 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~-------~~ 455 (1091)
-++.+++++.|+. +..+|+++ |+|.+||+++|+||+|||||||+++|.|+.+|+.|.|.++|.+.+++ ..
T Consensus 45 ~i~~~~l~~~~~t--g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~ 121 (347)
T 2obl_A 45 PLLRQVIDQPFIL--GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQ 121 (347)
T ss_dssp STTCCCCCSEECC--SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCH
T ss_pred CeeecccceecCC--CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhh
Confidence 4788999999963 35799999 99999999999999999999999999999999999999999763222 22
Q ss_pred HHHhhceeEEeccCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccc-cccCCCCCChHHHHHHHHH
Q 001371 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTL-VGEHGTQLSGGQKQRIAIA 534 (1091)
Q Consensus 456 ~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~-vge~G~~LSGGQkQRialA 534 (1091)
..+++.+.+++|.. . ...+++..+...+.+.++... .|.+.. +-+.-.+||+|| ||+++|
T Consensus 122 ~~~~~~v~~~~~~~--------------~--~~~~r~~~~~~~~~~ae~~~~--~~~~vl~~ld~~~~lS~g~-r~v~la 182 (347)
T 2obl_A 122 STLSKCVLVVTTSD--------------R--PALERMKAAFTATTIAEYFRD--QGKNVLLMMDSVTRYARAA-RDVGLA 182 (347)
T ss_dssp HHHTTEEEEEECTT--------------S--CHHHHHHHHHHHHHHHHHHHT--TTCEEEEEEETHHHHHHHH-HHHHHH
T ss_pred hhhhceEEEEECCC--------------C--CHHHHHHHHHHHHHHHHHHHh--ccccHHHHHhhHHHHHHHH-HHHHHH
Confidence 23444556665532 1 123455555555555555433 243321 123456899999 999999
Q ss_pred HHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc---CCC-----eEEEEccCchhhhccCeEEEEeCCEEeeecChhH
Q 001371 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIM---VNR-----TTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSK 606 (1091)
Q Consensus 535 RAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~---~~~-----T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~e 606 (1091)
+.+|++ |+++|+.....+.+.++++. +|. |++++||+++ -.-||++++|.+|+|+..|+.+|
T Consensus 183 ---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~~~l~~ 252 (347)
T 2obl_A 183 ---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVLTRELAE 252 (347)
T ss_dssp ---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEBCHHHHT
T ss_pred ---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEEeCCHHH
Confidence 588888 99999999999999888765 266 8999999998 56799999999999999999888
Q ss_pred Hhc
Q 001371 607 LVE 609 (1091)
Q Consensus 607 L~~ 609 (1091)
+..
T Consensus 253 ~~~ 255 (347)
T 2obl_A 253 ENH 255 (347)
T ss_dssp TTC
T ss_pred cCC
Confidence 743
No 95
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.77 E-value=1.6e-19 Score=225.23 Aligned_cols=166 Identities=28% Similarity=0.416 Sum_probs=120.8
Q ss_pred HHhccCCCCCcEEEECCccccCCChHHHhhceeEEeccCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCC
Q 001371 431 LIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQ 510 (1091)
Q Consensus 431 ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~ 510 (1091)
+.-+-+.|..|+|.++|.+|.++....+.+.++++.+-. -+.+++.. -.++.+..+. ..+++..+
T Consensus 387 C~g~rl~~~~~~V~i~G~~i~~~~~~~v~~~l~~~~~~~----l~~~~~~~-------~~~~~~~~~~--~~~~L~~v-- 451 (916)
T 3pih_A 387 CGGRRLNREALSVKINGLNIHEFTELSISEELEFLKNLN----LTEREREI-------VGELLKEIEK--RLEFLVDV-- 451 (916)
T ss_dssp TCSCCBCTTGGGEEETTEEHHHHHHSBHHHHHHHHHSCC----CCTTTTTT-------HHHHHHHHHH--HHHHHHTT--
T ss_pred cccccCChHhcCcEECCccHHHhhhCCHHHHHHHHHhcc----CcHHHHHH-------HHhhHHHHHH--HHHHHHHc--
Confidence 334567899999999999987665555555555433211 11111110 1111111111 12344444
Q ss_pred Ccccc-cccCCCCCChHHHHHHHHHHHhhcCCC--EEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhhc
Q 001371 511 GIDTL-VGEHGTQLSGGQKQRIAIARAILKDPR--ILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN 586 (1091)
Q Consensus 511 G~~T~-vge~G~~LSGGQkQRialARAll~~~~--IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~ 586 (1091)
|++.. ......+||||||||++|||||.++|+ +|||||||++||+...+.+.+.|+++. +|+|+|+|+|++..+..
T Consensus 452 gL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~~~~~~ 531 (916)
T 3pih_A 452 GLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEVIRN 531 (916)
T ss_dssp TCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCHHHHHT
T ss_pred CCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh
Confidence 44322 345567899999999999999999887 999999999999999999999998875 47899999999999999
Q ss_pred cCeEEEE------eCCEEeeecChhHHhcCC
Q 001371 587 ADMIAVI------HRGKIVEKGTHSKLVEDP 611 (1091)
Q Consensus 587 aD~Iivl------~~G~Ive~Gt~~eL~~~~ 611 (1091)
||+|++| ++|+|+.+|+++|+++.+
T Consensus 532 aD~ii~lgpgag~~~G~iv~~G~~~e~~~~~ 562 (916)
T 3pih_A 532 ADHIIDIGPGGGTNGGRVVFQGTVDELLKNP 562 (916)
T ss_dssp CSEEEEEESSSGGGCSEEEEEECHHHHHHSC
T ss_pred CCEEEEEcCCcccCCCEEEEeechhhhhcCc
Confidence 9999999 899999999999998763
No 96
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.75 E-value=2.1e-20 Score=214.96 Aligned_cols=148 Identities=18% Similarity=0.255 Sum_probs=106.9
Q ss_pred cccceeEEeeC--CCEEEEEcCCCCcHHHHHHHHhccCCCCC----cEEEE----CCccccCCChHHHhhceeEEeccCc
Q 001371 401 IFSGFSISISS--GTTAALVGQSGSGKSTVISLIERFYDPQA----GEVLI----DGINLKEFQLQWIRKKIGLVSQEPV 470 (1091)
Q Consensus 401 vL~~isl~i~~--G~~vaIVG~sGsGKSTLl~ll~g~~~~~~----G~I~i----dg~~i~~~~~~~lr~~ia~V~Q~~~ 470 (1091)
+.+.|+++|++ |++++||||||||||||+++|.|+++|++ |+|.+ +|.++ .++..++ ++|++++|++.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~ 234 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYI 234 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHH
Confidence 45789999999 99999999999999999999999999999 99987 46666 5666666 56999999999
Q ss_pred cccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCC--ccc--------ccccCCCCCChHHHHHHHHHHHh---
Q 001371 471 LFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQG--IDT--------LVGEHGTQLSGGQKQRIAIARAI--- 537 (1091)
Q Consensus 471 Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G--~~T--------~vge~G~~LSGGQkQRialARAl--- 537 (1091)
+|++|++|||.++..+..+..............++..++.+ ++. +..++|.++||||+||++++|+|
T Consensus 235 ~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l 314 (365)
T 1lw7_A 235 DYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKL 314 (365)
T ss_dssp HHHHHHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHH
T ss_pred HHHHhccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHH
Confidence 99999999999987655455555554444555556555533 333 22256677777888888888877
Q ss_pred hc--CCCEEEeeCCC
Q 001371 538 LK--DPRILLLDEAT 550 (1091)
Q Consensus 538 l~--~~~IliLDE~t 550 (1091)
++ +++|+++|||+
T Consensus 315 ~~~~~~~ililde~~ 329 (365)
T 1lw7_A 315 LDKYKVPYIEIESPS 329 (365)
T ss_dssp HHGGGCCCEEEECSS
T ss_pred HHHcCCCEEEeCCCC
Confidence 66 67778888775
No 97
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.75 E-value=1.5e-17 Score=188.99 Aligned_cols=78 Identities=28% Similarity=0.411 Sum_probs=69.0
Q ss_pred CCCCChHHHH------HHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhhccCeEEE
Q 001371 520 GTQLSGGQKQ------RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIAV 592 (1091)
Q Consensus 520 G~~LSGGQkQ------RialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~aD~Iiv 592 (1091)
-..||||||| |+++|||+..+|++|||||||++||+.+...+.+.|+++. +++|+|+|||+......||+|++
T Consensus 246 ~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~~~~ 325 (339)
T 3qkt_A 246 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIR 325 (339)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEEEE
T ss_pred hHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCEEEE
Confidence 3579999999 7788999999999999999999999999999999988754 46899999999888888999999
Q ss_pred Ee--CCE
Q 001371 593 IH--RGK 597 (1091)
Q Consensus 593 l~--~G~ 597 (1091)
|+ +|.
T Consensus 326 l~~~~g~ 332 (339)
T 3qkt_A 326 ISLENGS 332 (339)
T ss_dssp EEEETTE
T ss_pred EEecCCc
Confidence 95 454
No 98
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.74 E-value=3.4e-18 Score=205.42 Aligned_cols=77 Identities=19% Similarity=0.329 Sum_probs=71.6
Q ss_pred CCC-ChHHHHHHHHHHHhhcCC--CEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhccCeEEEEeCCE
Q 001371 521 TQL-SGGQKQRIAIARAILKDP--RILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGK 597 (1091)
Q Consensus 521 ~~L-SGGQkQRialARAll~~~--~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~ 597 (1091)
.+| |||||||++||||++.+| ++|||||||++||+.+...|.+.|+++.+++|+|+|||+++.+..||++++|++|.
T Consensus 395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~~d~~~~~~~~~ 474 (517)
T 4ad8_A 395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKVEKQV 474 (517)
T ss_dssp SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHHSSEEEEEECCE
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeccc
Confidence 346 999999999999999999 99999999999999999999999988877899999999999999999999996653
No 99
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.74 E-value=6.7e-20 Score=220.70 Aligned_cols=168 Identities=15% Similarity=0.116 Sum_probs=120.0
Q ss_pred CCccccceeE-EeeCCCEEEEEcCCCCcHHHHHHH--HhccCCCCCcEEEECCccccCCChHHHhhceeEEeccCccccc
Q 001371 398 NEQIFSGFSI-SISSGTTAALVGQSGSGKSTVISL--IERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTG 474 (1091)
Q Consensus 398 ~~~vL~~isl-~i~~G~~vaIVG~sGsGKSTLl~l--l~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~ 474 (1091)
..++|+|++| .|++|++++|+||+|||||||++. +.|+++|.+|.|.++|.+. ..+....+++++|++|++...
T Consensus 24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~-~~~~~~~~~~~g~~~q~~~~~-- 100 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET-PQDIIKNARSFGWDLAKLVDE-- 100 (525)
T ss_dssp CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHGGGTCCHHHHHHT--
T ss_pred CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC-HHHHHHHHHHcCCChHHhhcc--
Confidence 3579999999 999999999999999999999999 6799999999999999883 334445667899999997631
Q ss_pred cHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhh-cCCCEEEeeCCCCC-
Q 001371 475 SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL-KDPRILLLDEATSA- 552 (1091)
Q Consensus 475 TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll-~~~~IliLDE~tSa- 552 (1091)
+|+.+-..... ++.+++++..++.+. +-.++++|- .+|++++|||||+.
T Consensus 101 ---~~l~~~~~~~~-~~~~~~l~~~~l~~~-------------------------~~~~~~~LS~g~~~~lilDe~t~~~ 151 (525)
T 1tf7_A 101 ---GKLFILDASPD-PEGQEVVGGFDLSAL-------------------------IERINYAIQKYRARRVSIDSVTSVF 151 (525)
T ss_dssp ---TSEEEEECCCC-SSCCSCCSSHHHHHH-------------------------HHHHHHHHHHHTCSEEEEECSTTTS
T ss_pred ---CcEEEEecCcc-cchhhhhcccCHHHH-------------------------HHHHHHHHHHcCCCEEEECCHHHHH
Confidence 22222111000 000111112222222 223333332 35789999999985
Q ss_pred ----CCHHhHHHHHHHHHHHc-CCCeEEEEccCchhh---------hc-cCeEEEEeCCE
Q 001371 553 ----LDAESEKVVQEALDRIM-VNRTTVIVAHRLSTV---------RN-ADMIAVIHRGK 597 (1091)
Q Consensus 553 ----LD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i---------~~-aD~Iivl~~G~ 597 (1091)
+|+...+.+.+.++.+. .++|+|+|+|+++.+ .. ||+|++|++|+
T Consensus 152 ~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~~ 211 (525)
T 1tf7_A 152 QQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVL 211 (525)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEEC
T ss_pred HhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEEc
Confidence 58888888888887653 489999999999874 44 99999999865
No 100
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.73 E-value=2e-20 Score=198.06 Aligned_cols=141 Identities=13% Similarity=0.169 Sum_probs=109.0
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhceeEEeccCccccc---cHHHHhc--c
Q 001371 408 SISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTG---SIKDNIA--Y 482 (1091)
Q Consensus 408 ~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~---TIreNI~--~ 482 (1091)
+.++|+++||+||+|||||||+++|.|++.| +++||+||+++++. |+++|+. +
T Consensus 2 ~~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~ 59 (211)
T 3asz_A 2 SAPKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNY 59 (211)
T ss_dssp ---CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCT
T ss_pred CCCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCC
Confidence 3578999999999999999999999999875 59999999998854 5666654 3
Q ss_pred CCC-CCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChH----HHHHHHHHHHhhcCCCEEEeeCCCCC-----
Q 001371 483 GKD-DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGG----QKQRIAIARAILKDPRILLLDEATSA----- 552 (1091)
Q Consensus 483 g~~-~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGG----QkQRialARAll~~~~IliLDE~tSa----- 552 (1091)
+.+ ..+.+++.++++..++.+.+.. | + ..+|+| |+||+++||+++.+|+++++||||++
T Consensus 60 ~~~~~~~~~~~~~~l~~~~~~~~~~~-~-~---------~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~ 128 (211)
T 3asz_A 60 DHPDAFDLALYLEHAQALLRGLPVEM-P-V---------YDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLK 128 (211)
T ss_dssp TSGGGBCHHHHHHHHHHHHTTCCEEE-C-C---------EETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEE
T ss_pred CChhhhhHHHHHHHHHHHHcCCCcCC-C-c---------ccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEE
Confidence 333 2345677777766655443332 2 3 345555 46899999999999999999999999
Q ss_pred --CCHHhHHHHHHHHHHHc--CCCeEEEEccCc
Q 001371 553 --LDAESEKVVQEALDRIM--VNRTTVIVAHRL 581 (1091)
Q Consensus 553 --LD~~te~~i~~~l~~~~--~~~T~I~ItHrl 581 (1091)
||+.++..+.+.+.+.. +++|++.++|+.
T Consensus 129 i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 129 VFVDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp EEEECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred EEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 99999998988887642 588999999984
No 101
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.73 E-value=9e-22 Score=224.94 Aligned_cols=149 Identities=13% Similarity=0.083 Sum_probs=119.7
Q ss_pred EEEeEEEE---CCCCCCCccc---------cceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccC
Q 001371 385 ELRDVYFS---YPARPNEQIF---------SGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE 452 (1091)
Q Consensus 385 ~~~~vsf~---Y~~~~~~~vL---------~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~ 452 (1091)
+|+||+|+ |+.. +.++| +++||+|++|+.++|+||||||||||+++|+|+++|++|.|.++|. .+
T Consensus 137 ~f~~v~f~~~~Y~~~-~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~--~e 213 (361)
T 2gza_A 137 FFKHVRPMSKSLTPF-EQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDV--PE 213 (361)
T ss_dssp TTSCCCCSCSCCCHH-HHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESS--SC
T ss_pred CcCccccccccccch-hHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCc--cc
Confidence 89999999 8631 23566 9999999999999999999999999999999999999999999985 46
Q ss_pred CChHHHhhceeEEe-ccCcc---ccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHH
Q 001371 453 FQLQWIRKKIGLVS-QEPVL---FTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1091)
Q Consensus 453 ~~~~~lr~~ia~V~-Q~~~L---f~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQk 528 (1091)
+....+|+.++|++ |++.+ +..|+++||.++....++..+...++.+.++++++.+|.|++|.+++-+.+-..+..
T Consensus 214 ~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~~~~~~~l~~l~~g~~~~l~t~H~~~~~~~~ 293 (361)
T 2gza_A 214 LFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTRILLAELRGGEAYDFINVAASGHGGSITSCHAGSCELTF 293 (361)
T ss_dssp CCCTTCSSEEEEECC----------CCHHHHHHHHTTSCCSEEEESCCCSTHHHHHHHHHHTTCCSCEEEEECSSHHHHH
T ss_pred cCccccCCEEEEeecCccccccccccCHHHHHHHHHhcCCCEEEEcCchHHHHHHHHHHHhcCCCeEEEEECCCCHHHHH
Confidence 66666788999999 99886 889999999987654444334444455667889999999999999998888889999
Q ss_pred HHHHHHHH
Q 001371 529 QRIAIARA 536 (1091)
Q Consensus 529 QRialARA 536 (1091)
+||.....
T Consensus 294 ~Rl~~l~~ 301 (361)
T 2gza_A 294 ERLALMVL 301 (361)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99988764
No 102
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.73 E-value=2e-18 Score=192.72 Aligned_cols=181 Identities=12% Similarity=0.097 Sum_probs=122.5
Q ss_pred ccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCc-EEEECCccccCCChHHHhhceeEEeccCccccccHHH
Q 001371 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG-EVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKD 478 (1091)
Q Consensus 400 ~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G-~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIre 478 (1091)
++|+++++.+++|++++|+||+|||||||++.|++.+.|.+| .|.+.+.+ .+...+++++..+.|+..+ +..+
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e---~~~~~~~~r~~~~~~~~~~---~~~~ 96 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE---ESVEETAEDLIGLHNRVRL---RQSD 96 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS---SCHHHHHHHHHHHHTTCCG---GGCH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc---CCHHHHHHHHHHHHcCCCh---hhcc
Confidence 589999999999999999999999999999999999999888 77654433 3556676666666555432 2334
Q ss_pred HhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHH-HHHHHHHHHhhcCCCEEEeeCCCC---C--
Q 001371 479 NIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQ-KQRIAIARAILKDPRILLLDEATS---A-- 552 (1091)
Q Consensus 479 NI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQ-kQRialARAll~~~~IliLDE~tS---a-- 552 (1091)
|+..+. .++++..++++. .+...+-+ +.+...++|.+| +||+. |+|+..+|+++||||||+ +
T Consensus 97 ~l~~~~--~~~~~~~~~~~~-----~l~~~~l~----i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~ 164 (296)
T 1cr0_A 97 SLKREI--IENGKFDQWFDE-----LFGNDTFH----LYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASG 164 (296)
T ss_dssp HHHHHH--HHHTHHHHHHHH-----HHSSSCEE----EECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-------
T ss_pred ccccCC--CCHHHHHHHHHH-----HhccCCEE----EECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCC
Confidence 444331 222333332221 22222211 223324689999 77777 999999999999999999 4
Q ss_pred -CCH-HhHHHHHHHHHHHc--CCCeEEEEccCc--h--------------------hh-hccCeEEEEeCCEE
Q 001371 553 -LDA-ESEKVVQEALDRIM--VNRTTVIVAHRL--S--------------------TV-RNADMIAVIHRGKI 598 (1091)
Q Consensus 553 -LD~-~te~~i~~~l~~~~--~~~T~I~ItHrl--s--------------------~i-~~aD~Iivl~~G~I 598 (1091)
+|. .....+.+.|+++. .+.|+|+++|.. . .+ ..||+|++|++|+.
T Consensus 165 ~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 165 ESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp ----CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 344 34456777777654 378999999995 3 44 46999999999875
No 103
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.72 E-value=5e-18 Score=209.74 Aligned_cols=152 Identities=26% Similarity=0.417 Sum_probs=113.2
Q ss_pred CCCCCcEEEECCccccCCChHHHhhceeEEeccCccccccHHHHhccCCC-CCCHH-------HHHHHHHHcccHHHHhh
Q 001371 436 YDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKD-DATTE-------EIRVATELANAAKFIDK 507 (1091)
Q Consensus 436 ~~~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~-~~~~~-------~i~~a~~~a~l~~~i~~ 507 (1091)
+.|....+.++|.+|.++ ...||.|++.|... ..+++ -+.+..+.. +++..
T Consensus 432 l~~~~l~v~~~g~~i~q~------------------~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl---~~L~~ 490 (972)
T 2r6f_A 432 LKKESLAVLVGGKHIGEV------------------TAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL---GFLQN 490 (972)
T ss_dssp BCTTTTTEESSSCBHHHH------------------HTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHH---HHHHH
T ss_pred cCHHHheeEECCCcHHHH------------------hhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH---HHhhh
Confidence 456777899999876433 44566666666421 12221 112222221 22333
Q ss_pred CCCCcccc-cccCCCCCChHHHHHHHHHHHhhcCC--CEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchh
Q 001371 508 LPQGIDTL-VGEHGTQLSGGQKQRIAIARAILKDP--RILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLST 583 (1091)
Q Consensus 508 lp~G~~T~-vge~G~~LSGGQkQRialARAll~~~--~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~ 583 (1091)
+ |++.. ....-.+|||||||||+||+||..+| ++|||||||++||+...+.+.+.|+++. .|.|+|+|+|++..
T Consensus 491 v--GL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~ 568 (972)
T 2r6f_A 491 V--GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDT 568 (972)
T ss_dssp H--TCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHH
T ss_pred C--CCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 3 34322 34445689999999999999999985 9999999999999998888888888875 57999999999999
Q ss_pred hhccCeEEEE------eCCEEeeecChhHHhcC
Q 001371 584 VRNADMIAVI------HRGKIVEKGTHSKLVED 610 (1091)
Q Consensus 584 i~~aD~Iivl------~~G~Ive~Gt~~eL~~~ 610 (1091)
+..||+|++| ++|+|+.+|+++++.+.
T Consensus 569 i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~~~ 601 (972)
T 2r6f_A 569 MLAADYLIDIGPGAGIHGGEVVAAGTPEEVMND 601 (972)
T ss_dssp HHSCSEEEEECSSSGGGCCSEEEEECTTTTTTC
T ss_pred HHhCCEEEEeCCCccCCCCEEEEecCHHHHHhh
Confidence 9999999999 79999999999999875
No 104
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.72 E-value=3.7e-18 Score=217.06 Aligned_cols=172 Identities=16% Similarity=0.166 Sum_probs=123.1
Q ss_pred CcEEEEe-----EEEECCCCCCCccccceeEEeeC-------CCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCcc
Q 001371 382 GDIELRD-----VYFSYPARPNEQIFSGFSISISS-------GTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGIN 449 (1091)
Q Consensus 382 ~~I~~~~-----vsf~Y~~~~~~~vL~~isl~i~~-------G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~ 449 (1091)
+.|+++| +++.|++ +.++++|++|++++ |++++|+||+||||||+++.+ |+..+
T Consensus 749 ~~l~i~~~rHP~l~~~~~~--~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~----------- 814 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFG--DDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV----------- 814 (1022)
T ss_dssp CCEEEEEECCCC------C--CCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-----------
T ss_pred ceEEEEeccccEEEEEecC--CceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-----------
Confidence 3599999 9999953 35799999999988 999999999999999999999 99863
Q ss_pred ccCCChHHHhhcee-EEeccCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHH
Q 001371 450 LKEFQLQWIRKKIG-LVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1091)
Q Consensus 450 i~~~~~~~lr~~ia-~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQk 528 (1091)
+.++| ||||++. .-|+.|||.. . .++.+.+.. |. .++|+|++
T Consensus 815 ---------~aqiG~~Vpq~~~--~l~v~d~I~~-r--------------ig~~d~~~~---~~--------stf~~em~ 857 (1022)
T 2o8b_B 815 ---------MAQMGCYVPAEVC--RLTPIDRVFT-R--------------LGASDRIMS---GE--------STFFVELS 857 (1022)
T ss_dssp ---------HHTTTCCEESSEE--EECCCSBEEE-E--------------CC--------------------CHHHHHHH
T ss_pred ---------HhheeEEeccCcC--CCCHHHHHHH-H--------------cCCHHHHhh---ch--------hhhHHHHH
Confidence 34677 9999983 6688888742 1 122222211 21 35677776
Q ss_pred HHHHHHHHhhcCCCEEEeeCCCCCCCHHh-HHHHHHHHHHHc-C-CCeEEEEccCchhhhc-cCeEEEEeCCEEe--eec
Q 001371 529 QRIAIARAILKDPRILLLDEATSALDAES-EKVVQEALDRIM-V-NRTTVIVAHRLSTVRN-ADMIAVIHRGKIV--EKG 602 (1091)
Q Consensus 529 QRialARAll~~~~IliLDE~tSaLD~~t-e~~i~~~l~~~~-~-~~T~I~ItHrls~i~~-aD~Iivl~~G~Iv--e~G 602 (1091)
+ +++||++..+|+++||||||+++|+.. ...+.+.|+.+. + ++|+|++||.++.+.. +|++.|+ +|++. +.|
T Consensus 858 ~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~~~~~~ 935 (1022)
T 2o8b_B 858 E-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMACMVEN 935 (1022)
T ss_dssp H-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEEEC---
T ss_pred H-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEEEEEec
Confidence 5 999999999999999999999999986 455666666654 3 7899999999998765 8999887 58887 556
Q ss_pred ChhH
Q 001371 603 THSK 606 (1091)
Q Consensus 603 t~~e 606 (1091)
+.++
T Consensus 936 ~~~~ 939 (1022)
T 2o8b_B 936 ECED 939 (1022)
T ss_dssp ----
T ss_pred Cccc
Confidence 5443
No 105
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.70 E-value=3.1e-17 Score=161.60 Aligned_cols=88 Identities=25% Similarity=0.356 Sum_probs=75.8
Q ss_pred Cccccc-----ccCCCCCChHHHHHHHHH------HHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEc
Q 001371 511 GIDTLV-----GEHGTQLSGGQKQRIAIA------RAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVA 578 (1091)
Q Consensus 511 G~~T~v-----ge~G~~LSGGQkQRialA------RAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~It 578 (1091)
++++.+ .....+||||||||++|| ||++.+|+++||||||++||+.+.+.+.+.|.++. +++|+|+||
T Consensus 41 ~~~l~~~~~~~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivs 120 (148)
T 1f2t_B 41 KVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVS 120 (148)
T ss_dssp SEEEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEE
T ss_pred ceEEEeccccccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEE
Confidence 666665 234578999999999876 99999999999999999999999999999998864 478999999
Q ss_pred cCchhhhccCeEEEE--eCCEE
Q 001371 579 HRLSTVRNADMIAVI--HRGKI 598 (1091)
Q Consensus 579 Hrls~i~~aD~Iivl--~~G~I 598 (1091)
|+......||+|++| ++|..
T Consensus 121 H~~~~~~~~d~ii~l~~~~g~s 142 (148)
T 1f2t_B 121 HDEELKDAADHVIRISLENGSS 142 (148)
T ss_dssp SCGGGGGGCSEEEEEEEETTEE
T ss_pred ChHHHHHhCCEEEEEEcCCCeE
Confidence 999777789999999 56643
No 106
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.70 E-value=3.8e-19 Score=192.73 Aligned_cols=166 Identities=13% Similarity=0.163 Sum_probs=106.3
Q ss_pred CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhceeEEeccCccccccHH
Q 001371 398 NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIK 477 (1091)
Q Consensus 398 ~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIr 477 (1091)
+.++|+|+||++++|+++||+||+|||||||+++|.|++ |.+.+| ..++.++|++|+++...-|++
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~~i~~v~~d~~~~~l~~~ 76 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE----------QRQRKVVILSQDRFYKVLTAE 76 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGCSEEEEEGGGGBCCCCHH
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc----------ccCCceEEEeCCcCccccCHh
Confidence 457999999999999999999999999999999999977 655554 357789999999744446899
Q ss_pred HHhccCCC-------C-CCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCCEEEeeCC
Q 001371 478 DNIAYGKD-------D-ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEA 549 (1091)
Q Consensus 478 eNI~~g~~-------~-~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~IliLDE~ 549 (1091)
+|+.+... + .+.+++.+. ++.+.++.+..+ ..||+||+||+++ |++..+|+++|||||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------L~~l~~~~~~~~----~~ls~g~~~r~~~-~~~~~~~~~lilDg~ 142 (245)
T 2jeo_A 77 QKAKALKGQYNFDHPDAFDNDLMHRT---------LKNIVEGKTVEV----PTYDFVTHSRLPE-TTVVYPADVVLFEGI 142 (245)
T ss_dssp HHHHHHTTCCCTTSGGGBCHHHHHHH---------HHHHHTTCCEEE----CCEETTTTEECSS-CEEECCCSEEEEECT
T ss_pred HhhhhhccCCCCCCcccccHHHHHHH---------HHHHHCCCCeec----ccccccccCccCc-eEEecCCCEEEEeCc
Confidence 98764321 1 122223332 222333445444 4699999999998 688999999999998
Q ss_pred CCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhh-hc-cCeEEEEeCCEEeeecChhHHh
Q 001371 550 TSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTV-RN-ADMIAVIHRGKIVEKGTHSKLV 608 (1091)
Q Consensus 550 tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i-~~-aD~Iivl~~G~Ive~Gt~~eL~ 608 (1091)
....|.. +.+. .+.|++++||...-+ +. ++.+ ++|+ +.+++.
T Consensus 143 ~~~~~~~--------l~~~-~~~~i~v~th~~~~~~r~~~r~~---~~G~-----~~e~~~ 186 (245)
T 2jeo_A 143 LVFYSQE--------IRDM-FHLRLFVDTDSDVRLSRRVLRDV---RRGR-----DLEQIL 186 (245)
T ss_dssp TTTTSHH--------HHTT-CSEEEEEECCHHHHHHHHHHHHT---C--------CHHHHH
T ss_pred cccccHH--------HHHh-cCeEEEEECCHHHHHHHHHHHHH---HcCC-----CHHHHH
Confidence 8877753 2222 378999999974333 33 3333 5664 556654
No 107
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.70 E-value=1.9e-18 Score=196.37 Aligned_cols=167 Identities=17% Similarity=0.203 Sum_probs=122.1
Q ss_pred ccccce-eEEeeCCCEEEEEcCCCCcHHHHHHHHhccC--CCCC----cE-EEECCccccCCChHHHhhceeEEeccCcc
Q 001371 400 QIFSGF-SISISSGTTAALVGQSGSGKSTVISLIERFY--DPQA----GE-VLIDGINLKEFQLQWIRKKIGLVSQEPVL 471 (1091)
Q Consensus 400 ~vL~~i-sl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~--~~~~----G~-I~idg~~i~~~~~~~lr~~ia~V~Q~~~L 471 (1091)
+.|+++ ++.|++|++++|+||+|||||||++.+++.+ +|++ |. |++|+.+.. .++++++++|++.+
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~------~~~~i~~i~q~~~~ 191 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF------RPERIREIAQNRGL 191 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC------CHHHHHHHHHTTTC
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC------CHHHHHHHHHHcCC
Confidence 356665 6899999999999999999999999999998 6666 67 999997651 25679999999999
Q ss_pred ccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhh-------cCCCEE
Q 001371 472 FTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL-------KDPRIL 544 (1091)
Q Consensus 472 f~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll-------~~~~Il 544 (1091)
+..+++|||.+... .+ |++|+|++.++|+++ .+|+++
T Consensus 192 ~~~~v~~ni~~~~~-~~-----------------------------------~~~~~~~l~~~~~~~~~lS~G~~~~~ll 235 (349)
T 1pzn_A 192 DPDEVLKHIYVARA-FN-----------------------------------SNHQMLLVQQAEDKIKELLNTDRPVKLL 235 (349)
T ss_dssp CHHHHGGGEEEEEC-CS-----------------------------------HHHHHHHHHHHHHHHHHSSSSSSCEEEE
T ss_pred CHHHHhhCEEEEec-CC-----------------------------------hHHHHHHHHHHHHHHHHhccccCCCCEE
Confidence 98999999988653 21 356788888888887 689999
Q ss_pred EeeCCCCCCCHHh-------H-----HHHHHHHHHHc--CCCeEEEEccCchhhhc-cCeEEEEeCCEEeeecChhHHh
Q 001371 545 LLDEATSALDAES-------E-----KVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLV 608 (1091)
Q Consensus 545 iLDE~tSaLD~~t-------e-----~~i~~~l~~~~--~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~ 608 (1091)
|+||||+.+|++. + ..+...|.++. .+.|+|+++|....... ++.+.+..+|++++.+.+..|.
T Consensus 236 IlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~~~rL~ 314 (349)
T 1pzn_A 236 IVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRVY 314 (349)
T ss_dssp EEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCCTTCSEEEE
T ss_pred EEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeecCcEEEE
Confidence 9999999999863 1 23333344433 37899999998765432 3456778889999888877774
No 108
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.69 E-value=3.1e-17 Score=197.40 Aligned_cols=152 Identities=17% Similarity=0.128 Sum_probs=115.0
Q ss_pred eEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhceeEEeccCccccccHHHHhc-cCC
Q 001371 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIA-YGK 484 (1091)
Q Consensus 406 sl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIreNI~-~g~ 484 (1091)
+..+++|+.++|+||+|||||||++.++|...|. |. +.+.|++|++. .++++|.. +|
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~-----------------~vi~~~~ee~~---~~l~~~~~~~g- 332 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE-----------------RAILFAYEESR---AQLLRNAYSWG- 332 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC-----------------CEEEEESSSCH---HHHHHHHHTTS-
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC-----------------CEEEEEEeCCH---HHHHHHHHHcC-
Confidence 3489999999999999999999999999998874 53 02556677762 35566542 23
Q ss_pred CCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHH-----hHH
Q 001371 485 DDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE-----SEK 559 (1091)
Q Consensus 485 ~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~IliLDE~tSaLD~~-----te~ 559 (1091)
.+.+++ .. .|...........|||||+||+++||++..+|+++||| ||++||.. ..+
T Consensus 333 --~~~~~~----~~-----------~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~ 394 (525)
T 1tf7_A 333 --MDFEEM----ER-----------QNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQ 394 (525)
T ss_dssp --CCHHHH----HH-----------TTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHH
T ss_pred --CCHHHH----Hh-----------CCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHH
Confidence 222221 11 12223333344679999999999999999999999999 99999998 777
Q ss_pred HHHHHHHHHc-CCCeEEEEccCc----------hhhh-ccCeEEEEeCCE
Q 001371 560 VVQEALDRIM-VNRTTVIVAHRL----------STVR-NADMIAVIHRGK 597 (1091)
Q Consensus 560 ~i~~~l~~~~-~~~T~I~ItHrl----------s~i~-~aD~Iivl~~G~ 597 (1091)
.+.+.++.+. .+.|+|+|+|.. ..+. .||+|++|++|+
T Consensus 395 ~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 395 FVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 7777766553 578999999998 5565 499999999987
No 109
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.68 E-value=3.8e-17 Score=192.02 Aligned_cols=73 Identities=21% Similarity=0.306 Sum_probs=67.5
Q ss_pred CCChHHHHHHHHHHHhh----cCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC-CCeEEEEccCchhhhccCeEEEEe
Q 001371 522 QLSGGQKQRIAIARAIL----KDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRNADMIAVIH 594 (1091)
Q Consensus 522 ~LSGGQkQRialARAll----~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~-~~T~I~ItHrls~i~~aD~Iivl~ 594 (1091)
.||||||||++|||++. ++||++|||||||+||+.....+.+.|.+..+ +.++|+|||+...+..||+++++.
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~~~ 410 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGVY 410 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 49999999999999998 68999999999999999999999999988753 679999999998888999999995
No 110
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.67 E-value=1.4e-16 Score=197.67 Aligned_cols=136 Identities=27% Similarity=0.421 Sum_probs=103.7
Q ss_pred ccccccHHHHhccCCC-CCCHHH-------HHHHHHHcccHHHHhhCCCCcccc-cccCCCCCChHHHHHHHHHHHhhcC
Q 001371 470 VLFTGSIKDNIAYGKD-DATTEE-------IRVATELANAAKFIDKLPQGIDTL-VGEHGTQLSGGQKQRIAIARAILKD 540 (1091)
Q Consensus 470 ~Lf~~TIreNI~~g~~-~~~~~~-------i~~a~~~a~l~~~i~~lp~G~~T~-vge~G~~LSGGQkQRialARAll~~ 540 (1091)
.+++.||.|++.|... ..+.++ +.+..+.. +++..+ |++.. ....-.+|||||||||+||+||..+
T Consensus 465 q~~~ltV~e~l~f~enl~l~~~~~~i~~~i~~ei~~Rl---~~L~~v--GL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~ 539 (993)
T 2ygr_A 465 EVCELSIADCADFLNALTLGPREQAIAGQVLKEIRSRL---GFLLDV--GLEYLSLSRAAATLSGGEAQRIRLATQIGSG 539 (993)
T ss_dssp CSSHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHH---HHHHHH--TGGGSCTTCBGGGCCHHHHHHHHHHHHHTTC
T ss_pred HHhhCCHHHHHHHHHhcCCCHHHhHHHHHHHHHHHHHH---HHHhhC--CCCccccCCCcccCCHHHHHHHHHHHHHhhC
Confidence 3566788888887532 123311 11111221 223333 44322 3445568999999999999999998
Q ss_pred --CCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhhccCeEEEE------eCCEEeeecChhHHhcC
Q 001371 541 --PRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIAVI------HRGKIVEKGTHSKLVED 610 (1091)
Q Consensus 541 --~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~aD~Iivl------~~G~Ive~Gt~~eL~~~ 610 (1091)
|++|||||||++||+...+.+.+.|+++. .|+|+|+|+|++.++..||+|++| ++|+|+..|+++++.+.
T Consensus 540 ~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~Lgp~aG~~gG~iv~~G~~~e~~~~ 618 (993)
T 2ygr_A 540 LVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDEDTIEHADWIVDIGPGAGEHGGRIVHSGPYDELLRN 618 (993)
T ss_dssp CCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHTCSEEEEECSSSGGGCCSCCEEECHHHHHHC
T ss_pred CCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHHHHHhCCEEEEecCccccCCCEEEEeeCHHHhhhh
Confidence 58999999999999998888888887764 589999999999999999999999 69999999999999875
No 111
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.67 E-value=2.7e-17 Score=203.00 Aligned_cols=158 Identities=20% Similarity=0.226 Sum_probs=119.1
Q ss_pred CCcEEEEeEEEECCCC--CCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCC-CCCcEEEECCccccCCChHH
Q 001371 381 RGDIELRDVYFSYPAR--PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-PQAGEVLIDGINLKEFQLQW 457 (1091)
Q Consensus 381 ~~~I~~~~vsf~Y~~~--~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~-~~~G~I~idg~~i~~~~~~~ 457 (1091)
++.|++++. ++|-- .+.++++|+||+ |+.++|+||+||||||+++++.|+.. ++.|.+.- .
T Consensus 548 ~~~i~i~~~--rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vp-----------a 611 (765)
T 1ewq_A 548 GDRLQIRAG--RHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVP-----------A 611 (765)
T ss_dssp SSSEEEEEE--CCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBS-----------S
T ss_pred CCcEEEEEe--ECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCceee-----------h
Confidence 356888887 44421 235799999999 99999999999999999999999874 67786521 1
Q ss_pred HhhceeEEeccCcccc-ccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHH
Q 001371 458 IRKKIGLVSQEPVLFT-GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1091)
Q Consensus 458 lr~~ia~V~Q~~~Lf~-~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARA 536 (1091)
.+.++++++| +|. -++.||+..| +|+|++|++.+|++
T Consensus 612 ~~~~i~~v~~---i~~~~~~~d~l~~g---------------------------------------~S~~~~e~~~la~i 649 (765)
T 1ewq_A 612 EEAHLPLFDG---IYTRIGASDDLAGG---------------------------------------KSTFMVEMEEVALI 649 (765)
T ss_dssp SEEEECCCSE---EEEECCC------C---------------------------------------CSHHHHHHHHHHHH
T ss_pred hccceeeHHH---hhccCCHHHHHHhc---------------------------------------ccHHHHHHHHHHHH
Confidence 2457899887 555 3777776432 58899999999999
Q ss_pred h--hcCCCEEEeeCC---CCCCCHHhH-HHHHHHHHHHcCCCeEEEEccCchhhhccCeEEEEeCCEEee
Q 001371 537 I--LKDPRILLLDEA---TSALDAESE-KVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVE 600 (1091)
Q Consensus 537 l--l~~~~IliLDE~---tSaLD~~te-~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive 600 (1091)
+ ..+|+++||||| ||++|..+. ..+.+.|.+ .++|+|++||..+....| .-.++++++..
T Consensus 650 l~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~--~g~~vl~~TH~~~l~~~~--~~~v~n~~~~~ 715 (765)
T 1ewq_A 650 LKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE--RRAYTLFATHYFELTALG--LPRLKNLHVAA 715 (765)
T ss_dssp HHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEECCCHHHHTCC--CTTEEEEEEEE
T ss_pred HHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHhh--hhcceEEEEEE
Confidence 9 999999999999 999999875 467777776 589999999998876655 22344555544
No 112
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.67 E-value=4e-19 Score=196.07 Aligned_cols=129 Identities=12% Similarity=0.063 Sum_probs=96.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhceeEEeccCccccccHHHHhccCCCC---C
Q 001371 411 SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD---A 487 (1091)
Q Consensus 411 ~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~~---~ 487 (1091)
++.+++|+|+||||||||+++|.+++.+. | . . ++.+.+|+||+++|+.++++|+.++.++ .
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~--------~-~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~ 93 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------G--------G-EKSIGYASIDDFYLTHEDQLKLNEQFKNNKLL 93 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------G--------G-GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------C--------C-CceEEEeccccccCChHHHHHHhccccccchh
Confidence 56799999999999999999999999864 2 0 0 4456677999999999999999876421 0
Q ss_pred CHHHHHHHHHHcccHHHHhhCCCCcccc------cccCCCCCChHHHHHHHHH--HHhhcCCCEEEeeCCCCCCCHHh
Q 001371 488 TTEEIRVATELANAAKFIDKLPQGIDTL------VGEHGTQLSGGQKQRIAIA--RAILKDPRILLLDEATSALDAES 557 (1091)
Q Consensus 488 ~~~~i~~a~~~a~l~~~i~~lp~G~~T~------vge~G~~LSGGQkQRialA--RAll~~~~IliLDE~tSaLD~~t 557 (1091)
+....-++.+...+.+++..+++|++|. +...+.++||||+||+++| |++ +|+|+|+||+++++|+.+
T Consensus 94 ~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 94 QGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp SSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred hhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 0000111223445678899999998764 4567789999999999998 666 999999999999999865
No 113
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.67 E-value=2.5e-17 Score=176.50 Aligned_cols=147 Identities=18% Similarity=0.266 Sum_probs=102.6
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhccCCC-------CCcEEEECCccccCCChHHHhhceeEEeccCccccccHHHHh
Q 001371 408 SISSGTTAALVGQSGSGKSTVISLIERFYDP-------QAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNI 480 (1091)
Q Consensus 408 ~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~-------~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIreNI 480 (1091)
-|++|++++|+||||||||||++.|+|.+.+ ..|.+.+++.+. .+ ++++++++|+..++..|+.||+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~--~~----~~~i~~~~~~~~~~~~~~~~~~ 94 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--FR----PERIREIAQNRGLDPDEVLKHI 94 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC--CC----HHHHHHHHHHTTSCHHHHHHTE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC--CC----HHHHHHHHHHcCCCHHHHhhcE
Confidence 6999999999999999999999999997666 445888888652 11 2367888888888888999999
Q ss_pred ccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhh-------cCCCEEEeeCCCCCC
Q 001371 481 AYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL-------KDPRILLLDEATSAL 553 (1091)
Q Consensus 481 ~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll-------~~~~IliLDE~tSaL 553 (1091)
.+..+. +..+ |++++..+++++ .+|++++|||||+.+
T Consensus 95 ~~~~~~-~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l 138 (231)
T 4a74_A 95 YVARAF-NSNH-----------------------------------QMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHF 138 (231)
T ss_dssp EEEECC-SHHH-----------------------------------HHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHH
T ss_pred EEEecC-ChHH-----------------------------------HHHHHHHHHHHHHHhcccCCceeEEEECChHHHh
Confidence 876542 2111 222233333333 489999999999999
Q ss_pred CHH-------hH-----HHHHHHHHHHc--CCCeEEEEcc----Cchhhhc-cCeEEEEeCC
Q 001371 554 DAE-------SE-----KVVQEALDRIM--VNRTTVIVAH----RLSTVRN-ADMIAVIHRG 596 (1091)
Q Consensus 554 D~~-------te-----~~i~~~l~~~~--~~~T~I~ItH----rls~i~~-aD~Iivl~~G 596 (1091)
|++ .+ ..+.+.|.++. .+.|+|+++| ....+.+ ||++++|++|
T Consensus 139 ~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 139 RSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp HHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred ccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 984 22 13444554443 3799999999 4444654 8999999875
No 114
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.66 E-value=1e-18 Score=212.69 Aligned_cols=191 Identities=18% Similarity=0.279 Sum_probs=123.4
Q ss_pred cEEEEeEEEECCCCCCCccccce----------eEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCC-CCcEEEECCcccc
Q 001371 383 DIELRDVYFSYPARPNEQIFSGF----------SISISSGTTAALVGQSGSGKSTVISLIERFYDP-QAGEVLIDGINLK 451 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~i----------sl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~-~~G~I~idg~~i~ 451 (1091)
.++++|+++.|+.. ..++|+.+ ++++|. +|||||+|||||||+++|.|++.| ++|.|.++|.++.
T Consensus 10 ~i~~~~l~~~~~~~-~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~ 85 (608)
T 3szr_A 10 SVAENNLCSQYEEK-VRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLK 85 (608)
T ss_dssp ----------CHHH-HHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEE
T ss_pred hhhhhhhhHHHHHH-HHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEE
Confidence 57899999999632 23455444 477765 999999999999999999999988 7999999999964
Q ss_pred CCC---hHHHhhceeEEeccCcccc-ccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHH
Q 001371 452 EFQ---LQWIRKKIGLVSQEPVLFT-GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQ 527 (1091)
Q Consensus 452 ~~~---~~~lr~~ia~V~Q~~~Lf~-~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQ 527 (1091)
..+ ...+|++++|++|++.+++ .||+|||.+.. .. +.. .+..+|
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~------------~~------~~~-----------~~~~~s--- 133 (608)
T 3szr_A 86 LKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQ------------NA------IAG-----------EGMGIS--- 133 (608)
T ss_dssp EEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHH------------HH------HHC-----------SSSCCC---
T ss_pred EecCCccccceeEEeeecccccCCCHHHHHHHHHHHH------------HH------hcC-----------Cccccc---
Confidence 322 3568899999999998876 58999986421 00 100 111122
Q ss_pred HHHHHHHHHhhcCCCEEEeeCC------CCCCCHHhHHHHHHHHHHHcC---CCeEEEEccCchhh--------hc----
Q 001371 528 KQRIAIARAILKDPRILLLDEA------TSALDAESEKVVQEALDRIMV---NRTTVIVAHRLSTV--------RN---- 586 (1091)
Q Consensus 528 kQRialARAll~~~~IliLDE~------tSaLD~~te~~i~~~l~~~~~---~~T~I~ItHrls~i--------~~---- 586 (1091)
++++.++++...+|+++|+||| |++||+..++.+.+.++++.+ +-++++++|.+... +.
T Consensus 134 ~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~ 213 (608)
T 3szr_A 134 HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPE 213 (608)
T ss_dssp SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSS
T ss_pred hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhc
Confidence 2445555666678999999999 999999999999999988643 34567788987632 22
Q ss_pred -cCeEEEEeCCEEeeecChhHHhc
Q 001371 587 -ADMIAVIHRGKIVEKGTHSKLVE 609 (1091)
Q Consensus 587 -aD~Iivl~~G~Ive~Gt~~eL~~ 609 (1091)
...|+|+.++.+++.|+.+++.+
T Consensus 214 g~rtI~VlTK~Dlv~~g~~~~~~~ 237 (608)
T 3szr_A 214 GDRTIGILTKPDLVDKGTEDKVVD 237 (608)
T ss_dssp CCSEEEEEECGGGSSSSSTTCCCC
T ss_pred CCceEEEecchhhcCcccHHHHHH
Confidence 35689999999998888765543
No 115
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.66 E-value=9e-18 Score=177.27 Aligned_cols=169 Identities=14% Similarity=0.198 Sum_probs=107.9
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccC-----CCCCcEEEE-------CCcccc
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFY-----DPQAGEVLI-------DGINLK 451 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~-----~~~~G~I~i-------dg~~i~ 451 (1091)
|+++|++|+|+ .++|++ |++++|.+++|+|++|||||||++.|.|.. .|+.|.+.. ++..+.
T Consensus 4 l~~~~~~~~~~----~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~ 77 (210)
T 1pui_A 4 LNYQQTHFVMS----APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLV 77 (210)
T ss_dssp -------CEEE----ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEE
T ss_pred hhhhhhhheee----cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEE
Confidence 68999999995 268888 899999999999999999999999999998 888887654 233332
Q ss_pred CCC-----------hHHHhhceeEEeccCccccc-cHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccC
Q 001371 452 EFQ-----------LQWIRKKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEH 519 (1091)
Q Consensus 452 ~~~-----------~~~lr~~ia~V~Q~~~Lf~~-TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~ 519 (1091)
+.+ .+.+++.++++.|+...+++ ++..|+..+.. ..++++.+.++. ..+| .-.++.+
T Consensus 78 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~-~~~~~~~~~~~~-------~~~~---~~~v~nK 146 (210)
T 1pui_A 78 DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLK-DLDQQMIEWAVD-------SNIA---VLVLLTK 146 (210)
T ss_dssp ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCC-HHHHHHHHHHHH-------TTCC---EEEEEEC
T ss_pred ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCc-hhHHHHHHHHHH-------cCCC---eEEEEec
Confidence 211 13456667777765444443 44555543321 112223322221 1222 1234666
Q ss_pred CCCCChHHHHH-HHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc
Q 001371 520 GTQLSGGQKQR-IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM 569 (1091)
Q Consensus 520 G~~LSGGQkQR-ialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~ 569 (1091)
-..+|+||||| +..||+++++|+++++||||||+|......+.+.|.+..
T Consensus 147 ~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 147 ADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp GGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHH
Confidence 67899999999 899999999999999999999999998888888887754
No 116
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.65 E-value=3.7e-16 Score=196.20 Aligned_cols=168 Identities=14% Similarity=0.117 Sum_probs=120.6
Q ss_pred CcEEEEeEEEECCCC--CCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHH--------hccCCCCCcEEEECCcccc
Q 001371 382 GDIELRDVYFSYPAR--PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLI--------ERFYDPQAGEVLIDGINLK 451 (1091)
Q Consensus 382 ~~I~~~~vsf~Y~~~--~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll--------~g~~~~~~G~I~idg~~i~ 451 (1091)
+.|++++...-+-.. .+..+++|++|++++|++++|+||+||||||+++.+ .|.+-|.++..
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-------- 701 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-------- 701 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE--------
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc--------
Confidence 458888775544221 135799999999999999999999999999999999 55555543321
Q ss_pred CCChHHHhhceeEEeccCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHH
Q 001371 452 EFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRI 531 (1091)
Q Consensus 452 ~~~~~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRi 531 (1091)
++.+. .+|. .+| +.+.+ -..+|+|++++.
T Consensus 702 ----------~~~~d---~i~~-------~ig-----------------~~d~l--------------~~~lStf~~e~~ 730 (934)
T 3thx_A 702 ----------VSIVD---CILA-------RVG-----------------AGDSQ--------------LKGVSTFMAEML 730 (934)
T ss_dssp ----------EECCS---EEEE-------ECC----------------------------------------CHHHHHHH
T ss_pred ----------chHHH---HHHH-------hcC-----------------chhhH--------------HHhHhhhHHHHH
Confidence 11110 0111 011 11111 124788888888
Q ss_pred HHHHHh--hcCCCEEEeeCCCCCCCHHhHHHH-HHHHHHHc--CCCeEEEEccCchhhhccCeEEEEeCCEEeeecChhH
Q 001371 532 AIARAI--LKDPRILLLDEATSALDAESEKVV-QEALDRIM--VNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSK 606 (1091)
Q Consensus 532 alARAl--l~~~~IliLDE~tSaLD~~te~~i-~~~l~~~~--~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~e 606 (1091)
.+|+++ ..+|+++||||||+++|+.....+ ...++.+. .++|+|++||..+....||++..+++|++...|+.++
T Consensus 731 ~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~~ 810 (934)
T 3thx_A 731 ETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEET 810 (934)
T ss_dssp HHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETTE
T ss_pred HHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecCCc
Confidence 888888 899999999999999999877766 44444443 3789999999998888999999999999999888777
Q ss_pred Hh
Q 001371 607 LV 608 (1091)
Q Consensus 607 L~ 608 (1091)
+.
T Consensus 811 l~ 812 (934)
T 3thx_A 811 LT 812 (934)
T ss_dssp EE
T ss_pred EE
Confidence 63
No 117
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.64 E-value=1.5e-17 Score=180.84 Aligned_cols=181 Identities=16% Similarity=0.119 Sum_probs=111.4
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHh--ccCCCCCcEEEECCccccCCChHHHhhc
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIE--RFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~--g~~~~~~G~I~idg~~i~~~~~~~lr~~ 461 (1091)
++++++++.|+.- ..+|.+ .|++|++++|+||+|||||||++.|+ +..++.+|.+.+++.+..+ .....+++
T Consensus 7 ~~~~~i~tg~~~l--D~~l~G---gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 80 (251)
T 2ehv_A 7 QPVRRVKSGIPGF--DELIEG---GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERAR-DLRREMAS 80 (251)
T ss_dssp -CCCEECCSCTTT--GGGTTT---SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHH-HHHHHHHT
T ss_pred cccceeecCCHhH--HHHhcC---CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHH-HHHHHHHH
Confidence 5566777776531 123443 79999999999999999999999999 7656778888888754322 22334467
Q ss_pred eeEEeccCcccc-ccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcC
Q 001371 462 IGLVSQEPVLFT-GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1091)
Q Consensus 462 ia~V~Q~~~Lf~-~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~ 540 (1091)
+++++|++..+. -++.++....... ..++.... . ...+-++.++...+..-..+
T Consensus 81 ~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------------------~----~~~~~~~~~~~~~~~l~~~~ 135 (251)
T 2ehv_A 81 FGWDFEKYEKEGKIAIVDGVSSVVGL-PSEEKFVL--------------------E----DRFNVDNFLRYIYRVVKAIN 135 (251)
T ss_dssp TTCCHHHHHHTTSEEEEC--------------------------------------------CCHHHHHHHHHHHHHHTT
T ss_pred cCCChHHHhhcCCEEEEEcccccccc-ccccceec--------------------c----CcccHHHHHHHHHHHHHhhC
Confidence 899988764332 2344433221100 00000000 0 01123444444444334579
Q ss_pred CCEEEeeCCCCCCC-----HHhHHHHHHHHHHHc-CCCeEEEEccCchhh----------hcc-CeEEEEeC
Q 001371 541 PRILLLDEATSALD-----AESEKVVQEALDRIM-VNRTTVIVAHRLSTV----------RNA-DMIAVIHR 595 (1091)
Q Consensus 541 ~~IliLDE~tSaLD-----~~te~~i~~~l~~~~-~~~T~I~ItHrls~i----------~~a-D~Iivl~~ 595 (1091)
|++++|||||+.+| +...+.+.+.++.+. .++|+|++||.++.. ..| |+|++|++
T Consensus 136 p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~~ 207 (251)
T 2ehv_A 136 AKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLDL 207 (251)
T ss_dssp CSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEEE
T ss_pred CCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEee
Confidence 99999999999997 556666777666543 489999999998876 457 99999963
No 118
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.64 E-value=4.2e-17 Score=184.73 Aligned_cols=147 Identities=20% Similarity=0.233 Sum_probs=109.9
Q ss_pred EeEEEECCCCCCCccccceeE-------EeeCCCEEEEEcCCCCcHHHHHHHHhccCCCC-CcEEEECCccccCCChHHH
Q 001371 387 RDVYFSYPARPNEQIFSGFSI-------SISSGTTAALVGQSGSGKSTVISLIERFYDPQ-AGEVLIDGINLKEFQLQWI 458 (1091)
Q Consensus 387 ~~vsf~Y~~~~~~~vL~~isl-------~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~-~G~I~idg~~i~~~~~~~l 458 (1091)
.+++|+|... ..+.|+++.+ ..++|+.++|+|||||||||++++|+|+++|+ +|.|...+.++. +. +
T Consensus 92 ~~~~iR~~~~-~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e-~~---~ 166 (356)
T 3jvv_A 92 AGAVFRTIPS-KVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIE-FV---H 166 (356)
T ss_dssp EEEEEEEECC-SCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCC-SC---C
T ss_pred cEEEEEECCC-CCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHH-hh---h
Confidence 5778888543 4577888887 77899999999999999999999999999997 567655443332 22 2
Q ss_pred hhceeEEeccCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhh
Q 001371 459 RKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1091)
Q Consensus 459 r~~ia~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll 538 (1091)
+...++++|.+.-.. ..+-.+ +|||||.
T Consensus 167 ~~~~~~v~q~~~~~~------------~~~~~~----------------------------------------~La~aL~ 194 (356)
T 3jvv_A 167 ESKKCLVNQREVHRD------------TLGFSE----------------------------------------ALRSALR 194 (356)
T ss_dssp CCSSSEEEEEEBTTT------------BSCHHH----------------------------------------HHHHHTT
T ss_pred hccccceeeeeeccc------------cCCHHH----------------------------------------HHHHHhh
Confidence 334566776543111 011111 9999999
Q ss_pred cCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhccCeEEEEeCC
Q 001371 539 KDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRG 596 (1091)
Q Consensus 539 ~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G 596 (1091)
.+||+++||||| |.++.+.+.++ ...|+|+|+++|..+.+..+||+++|..|
T Consensus 195 ~~PdvillDEp~---d~e~~~~~~~~---~~~G~~vl~t~H~~~~~~~~dRli~l~~~ 246 (356)
T 3jvv_A 195 EDPDIILVGEMR---DLETIRLALTA---AETGHLVFGTLHTTSAAKTIDRVVDVFPA 246 (356)
T ss_dssp SCCSEEEESCCC---SHHHHHHHHHH---HHTTCEEEEEESCSSHHHHHHHHHHTSCH
T ss_pred hCcCEEecCCCC---CHHHHHHHHHH---HhcCCEEEEEEccChHHHHHHHHhhhcCc
Confidence 999999999999 77775555444 34589999999999999999999998654
No 119
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.64 E-value=7.9e-17 Score=178.76 Aligned_cols=149 Identities=23% Similarity=0.231 Sum_probs=102.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCC----hHHH--hhceeEEeccCcccc-ccHHHHhccC
Q 001371 411 SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ----LQWI--RKKIGLVSQEPVLFT-GSIKDNIAYG 483 (1091)
Q Consensus 411 ~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~----~~~l--r~~ia~V~Q~~~Lf~-~TIreNI~~g 483 (1091)
+|++++|||||||||||+++.|.|++.|++|+|.++|.|+.... +..+ |..++||+|++.++. .|+++|+.++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999987654 2333 457999999998765 4788888643
Q ss_pred CCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCC--EEEeeCCCCCCCHHhHHHH
Q 001371 484 KDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR--ILLLDEATSALDAESEKVV 561 (1091)
Q Consensus 484 ~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~--IliLDE~tSaLD~~te~~i 561 (1091)
.. + +.+..+-..+...+. .-..++..+|||.+||||+..+|+ ++.|| |+++.| +
T Consensus 181 ~~-----------~--~~d~~llDt~G~~~~----~~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~------~ 236 (304)
T 1rj9_A 181 KA-----------R--GYDLLFVDTAGRLHT----KHNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQN------G 236 (304)
T ss_dssp HH-----------H--TCSEEEECCCCCCTT----CHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTH------H
T ss_pred Hh-----------C--CCCEEEecCCCCCCc----hHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHH------H
Confidence 10 0 111001111211111 112246677999999999999999 44455 444433 3
Q ss_pred HHHHHHHc--CCCeEEEEccCchh
Q 001371 562 QEALDRIM--VNRTTVIVAHRLST 583 (1091)
Q Consensus 562 ~~~l~~~~--~~~T~I~ItHrls~ 583 (1091)
.+.++++. .+.|+|++||...+
T Consensus 237 ~~~~~~~~~~~~~t~iivTh~d~~ 260 (304)
T 1rj9_A 237 LEQAKKFHEAVGLTGVIVTKLDGT 260 (304)
T ss_dssp HHHHHHHHHHHCCSEEEEECTTSS
T ss_pred HHHHHHHHHHcCCcEEEEECCccc
Confidence 33333322 37899999997544
No 120
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.63 E-value=2.3e-17 Score=190.30 Aligned_cols=166 Identities=16% Similarity=0.188 Sum_probs=101.3
Q ss_pred CcEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhc
Q 001371 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1091)
Q Consensus 382 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ 461 (1091)
+.|+++|++++|++ .++++|++|+| +|||+||||||||++.|+|...|..| .+|.++...+ ...+..
T Consensus 10 ~~l~~~~l~~~y~~---~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~~-t~~~~~ 76 (418)
T 2qag_C 10 GYVGFANLPNQVYR---KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIKK-TVQVEQ 76 (418)
T ss_dssp -----CCCCCCTTT---TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC------CCEEEE
T ss_pred CcEEEEecceeECC---EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCcc-ceeeee
Confidence 45899999999963 47999999998 99999999999999999999886666 2343332111 112357
Q ss_pred eeEEeccCccc-cccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcC
Q 001371 462 IGLVSQEPVLF-TGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1091)
Q Consensus 462 ia~V~Q~~~Lf-~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~ 540 (1091)
+++++|++.++ +-||.||+.++.. .+.++.++. +.+++.. .++++++||++||||++++
T Consensus 77 i~~v~q~~~~~~~Ltv~Dt~g~~~~-~~~~~~~~~-----i~~~i~~--------------~~~~~l~qr~~IaRal~~d 136 (418)
T 2qag_C 77 SKVLIKEGGVQLLLTIVDTPGFGDA-VDNSNCWQP-----VIDYIDS--------------KFEDYLNAESRVNRRQMPD 136 (418)
T ss_dssp EECC------CEEEEEEECC------------CHH-----HHHHHHH--------------HHHHHTTTSCC-CCCCCCC
T ss_pred EEEEEecCCcccceeeeechhhhhh-ccchhhHHH-----HHHHHHH--------------HHHHHHHHHHHHHHHhccC
Confidence 99999998876 6799999988764 222221121 1223321 3455677899999999999
Q ss_pred CC---EEEeeCCC-CCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhh
Q 001371 541 PR---ILLLDEAT-SALDAESEKVVQEALDRIMVNRTTVIVAHRLSTV 584 (1091)
Q Consensus 541 ~~---IliLDE~t-SaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i 584 (1091)
|+ +|+||||| ++||+..... ++.+..+.++|+|.|+...+
T Consensus 137 ~~~~vlL~ldePt~~~L~~~d~~~----lk~L~~~v~iIlVinK~Dll 180 (418)
T 2qag_C 137 NRVQCCLYFIAPSGHGLKPLDIEF----MKRLHEKVNIIPLIAKADTL 180 (418)
T ss_dssp C-CCEEEEECCC-CCSCCHHHHHH----HHHHTTTSEEEEEEESTTSS
T ss_pred CCeeEEEEEecCcccCCCHHHHHH----HHHHhccCcEEEEEEcccCc
Confidence 99 99999999 5899876422 33334578899999987654
No 121
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.63 E-value=6.6e-16 Score=156.23 Aligned_cols=79 Identities=25% Similarity=0.301 Sum_probs=71.5
Q ss_pred CCCCChHHHHHHHHHHHhh----cCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhccCeEEEE--
Q 001371 520 GTQLSGGQKQRIAIARAIL----KDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVI-- 593 (1091)
Q Consensus 520 G~~LSGGQkQRialARAll----~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl-- 593 (1091)
...||||||||++||||+. ++|+++||||||++||+.+++.+.+.|+++.++.++|+|||+..++..||+|+.+
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~~ad~i~~v~~ 141 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMANADKIIGVSM 141 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHHHhCCEEEEEEe
Confidence 3579999999999999995 6689999999999999999999999999988888999999999999999999865
Q ss_pred eCCEE
Q 001371 594 HRGKI 598 (1091)
Q Consensus 594 ~~G~I 598 (1091)
++|..
T Consensus 142 ~~g~s 146 (173)
T 3kta_B 142 RDGVS 146 (173)
T ss_dssp ETTEE
T ss_pred cCCEE
Confidence 56653
No 122
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.60 E-value=3.3e-17 Score=182.41 Aligned_cols=162 Identities=15% Similarity=0.146 Sum_probs=78.9
Q ss_pred EeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcc-CCCCCcEEEECCccccCCChHHHhhceeEE
Q 001371 387 RDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERF-YDPQAGEVLIDGINLKEFQLQWIRKKIGLV 465 (1091)
Q Consensus 387 ~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~-~~~~~G~I~idg~~i~~~~~~~lr~~ia~V 465 (1091)
.|+++.|. .+.++++++|+| +||||+|+|||||++.|.|. ..|.+| |.++|.++.. .. . ++.++++
T Consensus 2 ~~l~~~~~---~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~-t~-~-~~~~~~~ 68 (301)
T 2qnr_A 2 SNLPNQVH---RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER-TV-Q-IEASTVE 68 (301)
T ss_dssp -------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEE
T ss_pred CCCcceEC---CEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC-cc-e-EeeEEEE
Confidence 46788885 347999999988 99999999999999999998 889999 9888887653 11 1 4578999
Q ss_pred eccCccc-cccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCCEE
Q 001371 466 SQEPVLF-TGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRIL 544 (1091)
Q Consensus 466 ~Q~~~Lf-~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~Il 544 (1091)
+|++.++ .-||.||..+|......++.....+. +.+. .+..+ .++|||||||+++|||+. ++
T Consensus 69 ~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~--l~~~-------~~~~~----~~~sgg~rqrv~~ara~~----ll 131 (301)
T 2qnr_A 69 IEERGVKLRLTVVDTPGYGDAINCRDCFKTIISY--IDEQ-------FERYL----HDESGLNRRHIIDNRVHC----CF 131 (301)
T ss_dssp EC---CCEEEEEEEEC-----------CTTHHHH--HHHH-------HHHHH----HHHTSSCCTTCCCCCCCE----EE
T ss_pred ecCCCcccCcchhhhhhhhhhcCcHHHHHHHHHH--HHHH-------HHHHH----HHhCHHhhhhhhhhhhhh----ee
Confidence 9987654 56999998876431111111111111 1111 11222 358999999999999985 99
Q ss_pred EeeCCCCC-CCHHhHHHHHHHHHHHcC--CCeEEEEccCch
Q 001371 545 LLDEATSA-LDAESEKVVQEALDRIMV--NRTTVIVAHRLS 582 (1091)
Q Consensus 545 iLDE~tSa-LD~~te~~i~~~l~~~~~--~~T~I~ItHrls 582 (1091)
++||||++ ||+... +.++++.+ +.++|+..|.+.
T Consensus 132 ~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 132 YFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp EEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred eeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 99999986 999864 33333333 345666677764
No 123
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.57 E-value=3.1e-18 Score=180.71 Aligned_cols=150 Identities=14% Similarity=0.160 Sum_probs=109.2
Q ss_pred eeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhceeEEeccCccccccHHHHhccC-CCCC
Q 001371 409 ISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYG-KDDA 487 (1091)
Q Consensus 409 i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIreNI~~g-~~~~ 487 (1091)
.++|++++|+||||||||||+++|.|+++|. | ..+++|+|+.+.++.+.++|+... ....
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------------------~~~g~v~~d~~~~~~~~~~~~~~~~~~~~ 79 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G------------------LPAEVVPMDGFHLDNRLLEPRGLLPRKGA 79 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T------------------CCEEEEESGGGBCCHHHHGGGTCGGGTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C------------------CceEEEecCCCcCCHHHHHHhcccccCCC
Confidence 4689999999999999999999999999876 5 258889999988888888886421 1111
Q ss_pred CHHHHHHHHHHcccHHHHhhCCCC--cccccccCCCCCChHHHHHHHHH-HHhhcCCCEEEeeCCC-----------CCC
Q 001371 488 TTEEIRVATELANAAKFIDKLPQG--IDTLVGEHGTQLSGGQKQRIAIA-RAILKDPRILLLDEAT-----------SAL 553 (1091)
Q Consensus 488 ~~~~i~~a~~~a~l~~~i~~lp~G--~~T~vge~G~~LSGGQkQRialA-RAll~~~~IliLDE~t-----------SaL 553 (1091)
..+.+...+.+++..|+.| +++++.++|..+||||+||+++| |+++.+++++++|||. ..|
T Consensus 80 -----~~~~~~~~~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~~~l~~~~d~~i~v 154 (208)
T 3c8u_A 80 -----PETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGWRDLTAIWDVSIRL 154 (208)
T ss_dssp -----GGGBCHHHHHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTGGGGGGTCSEEEEE
T ss_pred -----CchhhHHHHHHHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCchhHHHHHhcCEEEEE
Confidence 1111122234455555555 77899999999999999999999 9999999999999985 345
Q ss_pred CHHhHHHHHHHHHHHc-CCCeEEEEccCch
Q 001371 554 DAESEKVVQEALDRIM-VNRTTVIVAHRLS 582 (1091)
Q Consensus 554 D~~te~~i~~~l~~~~-~~~T~I~ItHrls 582 (1091)
|...+..++..+++.. .++|..-+.|+..
T Consensus 155 d~~~~~~~~R~~~R~~~~g~t~~~~~~~~~ 184 (208)
T 3c8u_A 155 EVPMADLEARLVQRWLDHGLNHDAAVARAQ 184 (208)
T ss_dssp CCCHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred eCCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 6666666666665533 2555555555443
No 124
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.55 E-value=6.5e-16 Score=163.33 Aligned_cols=141 Identities=14% Similarity=0.127 Sum_probs=104.6
Q ss_pred EEeeCCCEEEEEcCCCCcHHHHHHHHhccCCC--CCcEEEECCccccCCChHHHhhceeEEeccCccccc-cH----HHH
Q 001371 407 ISISSGTTAALVGQSGSGKSTVISLIERFYDP--QAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SI----KDN 479 (1091)
Q Consensus 407 l~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~--~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~-TI----reN 479 (1091)
-..++|++++|+||||||||||+++|+|+++| ..|.|.+.+.+.+. ..++.++|++|++.+|.. ++ .||
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~~~~f~E~ 86 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMISRDAFLEH 86 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHHTTCEEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHhcCHHHHH
Confidence 35789999999999999999999999999986 78999998876643 235679999999998875 45 577
Q ss_pred hccCCCC--CCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHh
Q 001371 480 IAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES 557 (1091)
Q Consensus 480 I~~g~~~--~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~IliLDE~tSaLD~~t 557 (1091)
+.+.... .+.+++ +.++..++++||| ||+.+
T Consensus 87 ~~~~~~~yg~~~~~v------------------------------------------~~~l~~G~illLD-----LD~~~ 119 (219)
T 1s96_A 87 AEVFGNYYGTSREAI------------------------------------------EQVLATGVDVFLD-----IDWQG 119 (219)
T ss_dssp EEETTEEEEEEHHHH------------------------------------------HHHHTTTCEEEEE-----CCHHH
T ss_pred HHHHhccCCCCHHHH------------------------------------------HHHHhcCCeEEEE-----ECHHH
Confidence 6653211 112222 2233346999999 99999
Q ss_pred HHHHHHHHHHHcCCCeEEEEccCchhhhccCeEEEEeCCEEeeecChhHHhc
Q 001371 558 EKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVE 609 (1091)
Q Consensus 558 e~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~~ 609 (1091)
.+.+.+.+. +++|+++++|+++.+.. |+ +++| .|+.+++.+
T Consensus 120 ~~~i~~~l~---~~~tI~i~th~~~~l~~--Rl--~~rG----~~~~e~i~~ 160 (219)
T 1s96_A 120 AQQIRQKMP---HARSIFILPPSKIELDR--RL--RGRG----QDSEEVIAK 160 (219)
T ss_dssp HHHHHHHCT---TCEEEEEECSSHHHHHH--HH--HTTS----CSCHHHHHH
T ss_pred HHHHHHHcc---CCEEEEEECCCHHHHHH--HH--HHcC----CCCHHHHHH
Confidence 999988775 57899999999998876 33 5666 567777753
No 125
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.55 E-value=3.3e-15 Score=160.24 Aligned_cols=166 Identities=15% Similarity=0.057 Sum_probs=113.4
Q ss_pred CccccceeE-EeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhh---ceeEEeccCccccc
Q 001371 399 EQIFSGFSI-SISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRK---KIGLVSQEPVLFTG 474 (1091)
Q Consensus 399 ~~vL~~isl-~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~---~ia~V~Q~~~Lf~~ 474 (1091)
.+.|+++.. .+++|+.++|+||+|||||||++.|++...+.+|.+.+.+.+.. .+.++. .+++.+|+..
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~---- 81 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEES---RDSIIRQAKQFNWDFEEYI---- 81 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSC---HHHHHHHHHHTTCCCGGGB----
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccC---HHHHHHHHHHhcchHHHHh----
Confidence 467889888 89999999999999999999999999998888888887665432 233222 3444444321
Q ss_pred cHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCC--EEEeeCCCCC
Q 001371 475 SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR--ILLLDEATSA 552 (1091)
Q Consensus 475 TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~--IliLDE~tSa 552 (1091)
.+++.+-.. ... ... +. .+- ...|.+|.++...+.+...+|+ ++++||||+.
T Consensus 82 --~~~~~~~~~-~~~--------------~~~--~~----~~~---~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~ 135 (235)
T 2w0m_A 82 --EKKLIIIDA-LMK--------------EKE--DQ----WSL---VNLTPEELVNKVIEAKQKLGYGKARLVIDSVSAL 135 (235)
T ss_dssp --TTTEEEEEC-CC--------------------CT----TBC---SSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGG
T ss_pred --hCCEEEEec-ccc--------------ccC--ce----eee---cCCCHHHHHHHHHHHHHhhCCCceEEEEECchHh
Confidence 111111110 000 000 00 011 1348999998888887778999 9999999988
Q ss_pred C--CHHhHHHHHHHHHHHc--CCCeEEEEccCc--------hhhh-ccCeEEEEeCCE
Q 001371 553 L--DAESEKVVQEALDRIM--VNRTTVIVAHRL--------STVR-NADMIAVIHRGK 597 (1091)
Q Consensus 553 L--D~~te~~i~~~l~~~~--~~~T~I~ItHrl--------s~i~-~aD~Iivl~~G~ 597 (1091)
+ |+...+.+.+.|+++. .+.|+|+++|.. ..+. .||+|++|++.+
T Consensus 136 ~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~~ 193 (235)
T 2w0m_A 136 FLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRMI 193 (235)
T ss_dssp SSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEEE
T ss_pred hcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEEe
Confidence 8 9887777777777653 478999999998 3354 499999998653
No 126
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.53 E-value=6.6e-17 Score=181.68 Aligned_cols=142 Identities=20% Similarity=0.193 Sum_probs=109.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHhccC--------CCCCcEEEECCccccCCC---------------hHHHhhceeEE---e
Q 001371 413 TTAALVGQSGSGKSTVISLIERFY--------DPQAGEVLIDGINLKEFQ---------------LQWIRKKIGLV---S 466 (1091)
Q Consensus 413 ~~vaIVG~sGsGKSTLl~ll~g~~--------~~~~G~I~idg~~i~~~~---------------~~~lr~~ia~V---~ 466 (1091)
++++|+|++|||||||++.|+|.+ .|+.|+|.+||.++...+ ..++++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 589999999999999999999998 789999999999998764 35678889988 7
Q ss_pred ccCc-cccccHHHHhccCCCCCCHHHHHHHH----------------HHcccHHHHhhCCCCcccccccCCCCCChHHHH
Q 001371 467 QEPV-LFTGSIKDNIAYGKDDATTEEIRVAT----------------ELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529 (1091)
Q Consensus 467 Q~~~-Lf~~TIreNI~~g~~~~~~~~i~~a~----------------~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQ 529 (1091)
|++. .|+.++.||+.++.|. .+.+.+ ..+++.++...+ .+|||||||
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~----~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~------------~~ls~g~~Q 148 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPG----PIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQM------------NQFTIAQSQ 148 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHH----HHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHH------------HHCHHHHHH
T ss_pred hcCCCCCCEEEEeCCCCCCHH----HHHHHHhcCccccCeEEECCEEEEEEHHHHHHHH------------hhchHHHHH
Confidence 8876 4788999999887652 121111 111121222211 158999999
Q ss_pred HHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCc
Q 001371 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRL 581 (1091)
Q Consensus 530 RialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl 581 (1091)
|...+|+++.+|+++ ||| +.+.+.|+++.++.|+++++|..
T Consensus 149 ~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~~~~~ii~~sh~~ 189 (318)
T 1nij_A 149 VGYADRILLTKTDVA--GEA---------EKLHERLARINARAPVYTVTHGD 189 (318)
T ss_dssp HHTCSEEEEECTTTC--SCT---------HHHHHHHHHHCSSSCEEECCSSC
T ss_pred HHhCCEEEEECcccC--CHH---------HHHHHHHHHhCCCCeEEEecccC
Confidence 999999999999987 888 56777777776789999999974
No 127
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.52 E-value=6.5e-15 Score=184.31 Aligned_cols=167 Identities=16% Similarity=0.161 Sum_probs=107.6
Q ss_pred cEEEEeEEEEC----CCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHH
Q 001371 383 DIELRDVYFSY----PARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI 458 (1091)
Q Consensus 383 ~I~~~~vsf~Y----~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~l 458 (1091)
.|.+++...-. -...+..|++|++|++++|+.++|+||+||||||+++.+.+..- +
T Consensus 640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~--------------------~ 699 (918)
T 3thx_B 640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITI--------------------M 699 (918)
T ss_dssp EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHH--------------------H
T ss_pred cEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHH--------------------H
Confidence 57777653211 01124689999999999999999999999999999999865321 0
Q ss_pred hhceeEEeccCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhh
Q 001371 459 RKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1091)
Q Consensus 459 r~~ia~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll 538 (1091)
.+.-.+||++..-+ .+.++|. ...++.+.+. .+-.++|+|++|+..|+|+ .
T Consensus 700 aq~g~~vpa~~~~i--~~~d~i~---------------~~ig~~d~l~-----------~~~stfs~em~~~~~il~~-a 750 (918)
T 3thx_B 700 AQIGSYVPAEEATI--GIVDGIF---------------TRMGAADNIY-----------KGRSTFMEELTDTAEIIRK-A 750 (918)
T ss_dssp HHHTCCBSSSEEEE--ECCSEEE---------------EEC---------------------CCHHHHHHHHHHHHHH-C
T ss_pred hhcCccccchhhhh--hHHHHHH---------------HhCChHHHHH-----------HhHHHhhHHHHHHHHHHHh-c
Confidence 11112344332110 0111111 0111111111 1224689999999999999 7
Q ss_pred cCCCEEEeeCCCCCCCHHhHHHHH-HHHHHHc--CCCeEEEEccCchhhhccCeEEE-EeCCEE
Q 001371 539 KDPRILLLDEATSALDAESEKVVQ-EALDRIM--VNRTTVIVAHRLSTVRNADMIAV-IHRGKI 598 (1091)
Q Consensus 539 ~~~~IliLDE~tSaLD~~te~~i~-~~l~~~~--~~~T~I~ItHrls~i~~aD~Iiv-l~~G~I 598 (1091)
.+|+++||||||+++|+.....+. ..++.+. .++|+|++||.++....||+.-- +.++++
T Consensus 751 ~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~~~~~v~n~~~ 814 (918)
T 3thx_B 751 TSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNYSHQVGNYHM 814 (918)
T ss_dssp CTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHTTTTEEEEEE
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHhhcccceEEEEE
Confidence 899999999999999999777776 4444442 48999999999988777776431 344444
No 128
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.51 E-value=3.5e-15 Score=170.91 Aligned_cols=179 Identities=13% Similarity=0.118 Sum_probs=113.8
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCE--EEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhh
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTT--AALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRK 460 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~--vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~ 460 (1091)
.+++++ +++|++ .+ |+++||++++|+. +|||||||||||||+++|+|+. ++|.++........++
T Consensus 16 ~l~~~~-~~~y~~---~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~ 82 (427)
T 2qag_B 16 TVPLAG-HVGFDS---LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQ 82 (427)
T ss_dssp -CCCCC-CC-CC-----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEE
T ss_pred eEEEee-EEEECC---ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEe
Confidence 456677 788853 35 9999999999999 9999999999999999999984 4555555444444566
Q ss_pred ceeEEeccCccc-cccHHHHhccCCCCCCHHHHHH----HHHHcccHHHHhhC-------CCCcccc-------cccCCC
Q 001371 461 KIGLVSQEPVLF-TGSIKDNIAYGKDDATTEEIRV----ATELANAAKFIDKL-------PQGIDTL-------VGEHGT 521 (1091)
Q Consensus 461 ~ia~V~Q~~~Lf-~~TIreNI~~g~~~~~~~~i~~----a~~~a~l~~~i~~l-------p~G~~T~-------vge~G~ 521 (1091)
.++|++|++.++ +-|+.||+.||.. .+.+.-+. .++. ...+++... +..-|+. |-+.+.
T Consensus 83 ~i~~v~Q~~~l~~~ltv~D~~~~g~~-~~~~~~~~~i~~~i~~-q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~ 160 (427)
T 2qag_B 83 SNTYDLQESNVRLKLTIVSTVGFGDQ-INKEDSYKPIVEFIDA-QFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGH 160 (427)
T ss_dssp EEEEEEEC--CEEEEEEEEEECCCC--CCHHHHSHHHHHHHHH-HHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC-
T ss_pred eEEEEeecCccccccchhhhhhhhhc-cccchhhhHHHHHHHH-HHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCC
Confidence 899999999887 5699999999864 33321111 1111 122233322 2222332 224445
Q ss_pred CCChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHH-Hc-CCCeEEEEcc
Q 001371 522 QLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDR-IM-VNRTTVIVAH 579 (1091)
Q Consensus 522 ~LSGGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~-~~-~~~T~I~ItH 579 (1091)
.|+-.+ +.++|+|..+++|+++|+++..|.+.--..+.+.|++ +. .|.+++.++.
T Consensus 161 ~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 161 SLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp --CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC-
T ss_pred CCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCC
Confidence 677666 8999999999999999999999988755666666765 33 4566777764
No 129
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.50 E-value=9.3e-16 Score=159.27 Aligned_cols=136 Identities=15% Similarity=0.080 Sum_probs=90.0
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhceeEEeccCccccccHHHHhccCCCCC
Q 001371 408 SISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDA 487 (1091)
Q Consensus 408 ~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~~~ 487 (1091)
.+++|+.++|+||+|||||||+++|.|. |..|.|.+||.++..... -++.++|++|++. .+.|+++|+.+..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~--~~~~~~~~~~~~~-~~~~v~~~l~~~~--- 76 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIK--HGRIDPWLPQSHQ-QNRMIMQIAADVA--- 76 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCC--SSCCCTTSSSHHH-HHHHHHHHHHHHH---
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhh--cccccCCccchhh-hhHHHHHHHHHHH---
Confidence 4789999999999999999999999998 778999999987644321 1345789999776 5678999986421
Q ss_pred CHHHHHHHHHHcccHHHHhhCCC--Cccc--ccccCCCCCChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHH
Q 001371 488 TTEEIRVATELANAAKFIDKLPQ--GIDT--LVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQE 563 (1091)
Q Consensus 488 ~~~~i~~a~~~a~l~~~i~~lp~--G~~T--~vge~G~~LSGGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~ 563 (1091)
.. ..+ .+-...++.+.. +.+. ..+.....+|+||+||+++||++.++|+++ +|+...+.+.+
T Consensus 77 ---~~--~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~ 142 (191)
T 1zp6_A 77 ---GR--YAK-EGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHS 142 (191)
T ss_dssp ---HH--HHH-TSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHH
T ss_pred ---HH--Hhc-cCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHH
Confidence 00 011 000000000000 1110 012234579999999999999999999976 57765555544
Q ss_pred HH
Q 001371 564 AL 565 (1091)
Q Consensus 564 ~l 565 (1091)
.+
T Consensus 143 ~~ 144 (191)
T 1zp6_A 143 QF 144 (191)
T ss_dssp HT
T ss_pred HH
Confidence 44
No 130
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.49 E-value=2.7e-14 Score=151.67 Aligned_cols=151 Identities=15% Similarity=0.131 Sum_probs=95.6
Q ss_pred ccccceeE-EeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhceeEEeccCccccccHHH
Q 001371 400 QIFSGFSI-SISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKD 478 (1091)
Q Consensus 400 ~vL~~isl-~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIre 478 (1091)
+.|+++.. .+++|++++|+||+|||||||++.+++ .+..+.+.+++.+ ..+... +++
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~--~~~~~~------------------~~~ 64 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEG--GFSPER------------------LVQ 64 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSC--CCCHHH------------------HHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCC--CCCHHH------------------HHH
Confidence 46777665 799999999999999999999999999 3333334443321 111111 111
Q ss_pred HhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChH--HHHHHHHHHHhhcC-CCEEEeeCCCCCCCH
Q 001371 479 NIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGG--QKQRIAIARAILKD-PRILLLDEATSALDA 555 (1091)
Q Consensus 479 NI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGG--QkQRialARAll~~-~~IliLDE~tSaLD~ 555 (1091)
.... ...+.++ ..+.+ .+. .+|++ |+|+++.+|+++++ |+++|+||||+.+|+
T Consensus 65 ~~~~--~~~~~~~------------~~~~~------~~~----~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~ 120 (220)
T 2cvh_A 65 MAET--RGLNPEE------------ALSRF------ILF----TPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRA 120 (220)
T ss_dssp HHHT--TTCCHHH------------HHHHE------EEE----CCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTG
T ss_pred HHHh--cCCChHH------------HhhcE------EEE----ecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhh
Confidence 1110 0011111 11111 011 23344 47899999999986 999999999999997
Q ss_pred HhH-----H---HHHHHHHHHcC--CCeEEEEccCch-------------hh-hccCeEEEEeCC
Q 001371 556 ESE-----K---VVQEALDRIMV--NRTTVIVAHRLS-------------TV-RNADMIAVIHRG 596 (1091)
Q Consensus 556 ~te-----~---~i~~~l~~~~~--~~T~I~ItHrls-------------~i-~~aD~Iivl~~G 596 (1091)
..+ + .+.+.|+++.+ +.|+|+++|... .+ ..||.|++|++.
T Consensus 121 ~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 121 EENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp GGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 542 2 33444555443 789999999865 23 459999999754
No 131
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.49 E-value=1e-14 Score=181.25 Aligned_cols=165 Identities=14% Similarity=0.160 Sum_probs=110.0
Q ss_pred cEEEEeEEEECCCC----CCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCC-CCcEEEECCccccCCChHH
Q 001371 383 DIELRDVYFSYPAR----PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-QAGEVLIDGINLKEFQLQW 457 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~----~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~-~~G~I~idg~~i~~~~~~~ 457 (1091)
.|++++.. .|-- .+..+++|++|+ ++|++++|+||+||||||+++++.|...+ +.|. .+..
T Consensus 577 ~i~i~~~r--HP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~------~vpa----- 642 (800)
T 1wb9_A 577 GIRITEGR--HPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGS------YVPA----- 642 (800)
T ss_dssp CEEEEEEC--CTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTC------CBSS-----
T ss_pred CEEEEecc--ccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCc------ccch-----
Confidence 47777653 2310 235799999999 99999999999999999999999997432 2231 1111
Q ss_pred HhhceeEEeccCcccc-ccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHH
Q 001371 458 IRKKIGLVSQEPVLFT-GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1091)
Q Consensus 458 lr~~ia~V~Q~~~Lf~-~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARA 536 (1091)
-+..++++.| +|. -++.||+..+ -.++|+|+++ ++.+..
T Consensus 643 ~~~~i~~~~~---i~~~~~~~d~l~~~------------------------------------~stf~~e~~~-~~~il~ 682 (800)
T 1wb9_A 643 QKVEIGPIDR---IFTRVGAADDLASG------------------------------------RSTFMVEMTE-TANILH 682 (800)
T ss_dssp SEEEECCCCE---EEEEEC-----------------------------------------------CHHHHHH-HHHHHH
T ss_pred hcccceeHHH---HHhhCCHHHHHHhh------------------------------------hhhhhHHHHH-HHHHHH
Confidence 1235677665 443 2455554321 0235667664 444445
Q ss_pred hhcCCCEEEeeCCCCCCCHHhHHHH-HHHHHHHc--CCCeEEEEccCchhhhccCeEEEEeCCEEeee
Q 001371 537 ILKDPRILLLDEATSALDAESEKVV-QEALDRIM--VNRTTVIVAHRLSTVRNADMIAVIHRGKIVEK 601 (1091)
Q Consensus 537 ll~~~~IliLDE~tSaLD~~te~~i-~~~l~~~~--~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~ 601 (1091)
...+|+++|||||++++|+.....+ .+.++.+. .++|+|++||..+....||++..+++|++...
T Consensus 683 ~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~~~~~ 750 (800)
T 1wb9_A 683 NATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDAL 750 (800)
T ss_dssp HCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEEEEEE
T ss_pred hccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhhhceEEEEEEEE
Confidence 5789999999999999998755443 45555543 37899999999998888999888888887654
No 132
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.48 E-value=6.1e-14 Score=154.89 Aligned_cols=151 Identities=16% Similarity=0.208 Sum_probs=101.3
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhceeEEeccCccccccHHHHhc-cCCCC
Q 001371 408 SISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIA-YGKDD 486 (1091)
Q Consensus 408 ~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIreNI~-~g~~~ 486 (1091)
.+++|++++|+||+|||||||+..+++... .|.+ +.|.+..+ +..+.|++.+... ..+++++. +|. +
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~-~~g~~~~~------~~~v~~~~~e~~~--~~~~~r~~~~g~-~ 93 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPD-LLEVGELP------TGPVIYLPAEDPP--TAIHHRLHALGA-H 93 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCC-TTCCCCCC------CCCEEEEESSSCH--HHHHHHHHHHHT-T
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCC-cCCCccCC------CccEEEEECCCCH--HHHHHHHHHHHh-h
Confidence 478999999999999999999999998764 5666 33543321 2468888776543 23333322 232 2
Q ss_pred CCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCCEEEeeCCCC--CCCHHhH---HHH
Q 001371 487 ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS--ALDAESE---KVV 561 (1091)
Q Consensus 487 ~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~IliLDE~tS--aLD~~te---~~i 561 (1091)
.+.++..++++...+ ....+.....||+||+||+ |+++++|+++||||||+ ++|.... ..+
T Consensus 94 ~~~~~~~~~~~~l~l-----------~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~ 159 (279)
T 1nlf_A 94 LSAEERQAVADGLLI-----------QPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQV 159 (279)
T ss_dssp SCHHHHHHHHHHEEE-----------CCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHH
T ss_pred cChhhhhhccCceEE-----------eecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHH
Confidence 344444444444332 2223445667999998875 78889999999999999 9998644 566
Q ss_pred HHHHHHHc--CCCeEEEEccCchhh
Q 001371 562 QEALDRIM--VNRTTVIVAHRLSTV 584 (1091)
Q Consensus 562 ~~~l~~~~--~~~T~I~ItHrls~i 584 (1091)
.+.|.++. .++|+|+|+|.....
T Consensus 160 ~~~L~~l~~~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 160 IGRMEAIAADTGCSIVFLHHASKGA 184 (279)
T ss_dssp HHHHHHHHHHHCCEEEEEEEC----
T ss_pred HHHHHHHHHHcCCEEEEEecCCCcc
Confidence 66776653 389999999987543
No 133
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.42 E-value=2.2e-13 Score=146.96 Aligned_cols=148 Identities=18% Similarity=0.276 Sum_probs=94.0
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhc--cCCC-----CCcEEEECCccc-cCCChHHHhhceeEEeccCccccccHHHH
Q 001371 408 SISSGTTAALVGQSGSGKSTVISLIER--FYDP-----QAGEVLIDGINL-KEFQLQWIRKKIGLVSQEPVLFTGSIKDN 479 (1091)
Q Consensus 408 ~i~~G~~vaIVG~sGsGKSTLl~ll~g--~~~~-----~~G~I~idg~~i-~~~~~~~lr~~ia~V~Q~~~Lf~~TIreN 479 (1091)
-+++|++++|+||+|||||||++.|++ ..+| ..|.+.+++.+. ..-.+..+++++++.+|+ +.+|
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~ 92 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD-------VLDN 92 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH-------HHHT
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH-------HhhC
Confidence 489999999999999999999999999 4554 578899998763 112234455677877764 5677
Q ss_pred hccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHH---
Q 001371 480 IAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE--- 556 (1091)
Q Consensus 480 I~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~IliLDE~tSaLD~~--- 556 (1091)
+.+..+ .+.++..+.++. +.+.+. -.+|+++++|||++.+|+.
T Consensus 93 ~~~~~~-~~~~~~~~~~~~--~~~~~~-------------------------------~~~~~lliiD~~~~~~~~~~~~ 138 (243)
T 1n0w_A 93 VAYARA-FNTDHQTQLLYQ--ASAMMV-------------------------------ESRYALLIVDSATALYRTDYSG 138 (243)
T ss_dssp EEEEEC-CSHHHHHHHHHH--HHHHHH-------------------------------HSCEEEEEEETSSGGGC-----
T ss_pred eEEEec-CCHHHHHHHHHH--HHHHHh-------------------------------cCCceEEEEeCchHHHHHHhcC
Confidence 765443 333333322211 111111 1589999999999999986
Q ss_pred ----hHH-----HHHHHHHHHc--CCCeEEEEccCchhhh--------------------ccCeEEEEeCC
Q 001371 557 ----SEK-----VVQEALDRIM--VNRTTVIVAHRLSTVR--------------------NADMIAVIHRG 596 (1091)
Q Consensus 557 ----te~-----~i~~~l~~~~--~~~T~I~ItHrls~i~--------------------~aD~Iivl~~G 596 (1091)
+++ .+.+.|.++. .++|+|+++|-..... .||.|++|++|
T Consensus 139 ~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 139 RGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 432 2333344332 3789999999654322 58999999865
No 134
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.40 E-value=2.9e-15 Score=169.25 Aligned_cols=178 Identities=13% Similarity=0.158 Sum_probs=117.6
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCCh----HHHh
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL----QWIR 459 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~----~~lr 459 (1091)
|+++|++++|. ...+|+++||++++|++++|+||+|||||||++.|.|++.|++|+|.+.|.|+..... ...|
T Consensus 30 ie~~~~~~~~~---~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~ 106 (337)
T 2qm8_A 30 AESRRADHRAA---VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDK 106 (337)
T ss_dssp HTCSSHHHHHH---HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCG
T ss_pred HeeCCcccccC---hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHh
Confidence 34455566663 2368999999999999999999999999999999999999999999999998865432 3457
Q ss_pred hceeEEeccCccccc-------------cHHHHhc-c---CC-------CC--CCHHHHHHHHHHc-------------c
Q 001371 460 KKIGLVSQEPVLFTG-------------SIKDNIA-Y---GK-------DD--ATTEEIRVATELA-------------N 500 (1091)
Q Consensus 460 ~~ia~V~Q~~~Lf~~-------------TIreNI~-~---g~-------~~--~~~~~i~~a~~~a-------------~ 500 (1091)
.++++++|++.+|.. +++|.+. + |. +. .++..+.+.++.+ .
T Consensus 107 ~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~ 186 (337)
T 2qm8_A 107 TRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQG 186 (337)
T ss_dssp GGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------
T ss_pred hhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHH
Confidence 789999999998852 2333321 0 00 00 0111111100000 0
Q ss_pred cHHHHhhCCCCcc-cccc-cCCCCCChHHHHHHHHHHHhhc------CCCEEEeeCCCCCCCHHhHHHHHHHHHHH
Q 001371 501 AAKFIDKLPQGID-TLVG-EHGTQLSGGQKQRIAIARAILK------DPRILLLDEATSALDAESEKVVQEALDRI 568 (1091)
Q Consensus 501 l~~~i~~lp~G~~-T~vg-e~G~~LSGGQkQRialARAll~------~~~IliLDE~tSaLD~~te~~i~~~l~~~ 568 (1091)
+.+.+...|+-.- +.+. .....+|+|++|+++.|++++. +|+++. |||+|...-..+.+.|.+.
T Consensus 187 i~~~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~ 258 (337)
T 2qm8_A 187 IKKGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDH 258 (337)
T ss_dssp CCTTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHH
Confidence 0000111121000 0111 0113478999999999999987 688887 9999999888888888764
No 135
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.38 E-value=2.6e-13 Score=157.15 Aligned_cols=155 Identities=19% Similarity=0.266 Sum_probs=104.2
Q ss_pred ccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCC----hHH--HhhceeEEeccCccc-cc
Q 001371 402 FSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ----LQW--IRKKIGLVSQEPVLF-TG 474 (1091)
Q Consensus 402 L~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~----~~~--lr~~ia~V~Q~~~Lf-~~ 474 (1091)
-+++||++++|++++|||++|||||||++.|.|++.|++|+|.++|.|..... +.. .|.+|+||+|++.++ ..
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~ 362 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 362 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence 36789999999999999999999999999999999999999999988775432 222 477899999998755 56
Q ss_pred cHHHHhccCCC-CCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcC-C-CEEEeeCCCC
Q 001371 475 SIKDNIAYGKD-DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD-P-RILLLDEATS 551 (1091)
Q Consensus 475 TIreNI~~g~~-~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~-~-~IliLDE~tS 551 (1091)
|+++||.++.. +++ + ..+..+|. .+ +-.++-.--+||+.++|++..+ | .+|+..|||+
T Consensus 363 tV~e~l~~a~~~~~D---v-VLIDTaGr----------l~-----~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDatt 423 (503)
T 2yhs_A 363 VIFDAIQAAKARNID---V-LIADTAGR----------LQ-----NKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDAST 423 (503)
T ss_dssp HHHHHHHHHHHTTCS---E-EEECCCCS----------CC-----CHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGG
T ss_pred HHHHHHHHHHhcCCC---E-EEEeCCCc----------cc-----hhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcc
Confidence 89999976531 110 0 00011110 00 0011212235889999988643 5 3666666888
Q ss_pred CCCHHhHHHHHHHHHHHcCCCeEEEEcc
Q 001371 552 ALDAESEKVVQEALDRIMVNRTTVIVAH 579 (1091)
Q Consensus 552 aLD~~te~~i~~~l~~~~~~~T~I~ItH 579 (1091)
+.|.... .+.+.+. .+.|.|++||
T Consensus 424 Gq~al~~---ak~f~~~-~~itgvIlTK 447 (503)
T 2yhs_A 424 GQNAVSQ---AKLFHEA-VGLTGITLTK 447 (503)
T ss_dssp THHHHHH---HHHHHHH-TCCSEEEEEC
T ss_pred cHHHHHH---HHHHHhh-cCCCEEEEEc
Confidence 7655422 1122222 3689999999
No 136
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.33 E-value=3.6e-16 Score=162.24 Aligned_cols=166 Identities=13% Similarity=0.052 Sum_probs=106.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhceeEEeccCccc-cccHHHHhccCCCCCCHH
Q 001371 412 GTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLF-TGSIKDNIAYGKDDATTE 490 (1091)
Q Consensus 412 G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf-~~TIreNI~~g~~~~~~~ 490 (1091)
|++++|+||+||||||+++.|.+ |.+|.+.++|.++... ..+++++|.+..+ +.|+++|+.+.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~------- 65 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM------VVGGYRPPWESDELLALTWKNITDL------- 65 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT------CCTTCCCGGGCHHHHHHHHHHHHHH-------
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh------hccccccCccchhHHHHHHHHHHHH-------
Confidence 67899999999999999999997 6689999998665432 2467888866433 45777776431
Q ss_pred HHHHHHHHcccHHHHhhCCCCcccccccC----CCCC--ChHHHHHHHHHH------HhhcCCCEEEeeCCCCCCCHHhH
Q 001371 491 EIRVATELANAAKFIDKLPQGIDTLVGEH----GTQL--SGGQKQRIAIAR------AILKDPRILLLDEATSALDAESE 558 (1091)
Q Consensus 491 ~i~~a~~~a~l~~~i~~lp~G~~T~vge~----G~~L--SGGQkQRialAR------All~~~~IliLDE~tSaLD~~te 558 (1091)
.....+ .+. +.+ .+...+.. -..+ |+||+||+.++. +++++++...+|+ .+|+...
T Consensus 66 -~~~~~~-~~~-~~i------ld~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~ 133 (189)
T 2bdt_A 66 -TVNFLL-AQN-DVV------LDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCL 133 (189)
T ss_dssp -HHHHHH-TTC-EEE------EESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGG
T ss_pred -HHHHHh-cCC-cEE------EeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHH
Confidence 011110 000 000 11111110 0124 888888888888 8889998888884 7898766
Q ss_pred HHHHHHHHHHc-CCCeEEEEccC-chhhhc-cCeEEEEeCCEEeeecChhHHh
Q 001371 559 KVVQEALDRIM-VNRTTVIVAHR-LSTVRN-ADMIAVIHRGKIVEKGTHSKLV 608 (1091)
Q Consensus 559 ~~i~~~l~~~~-~~~T~I~ItHr-ls~i~~-aD~Iivl~~G~Ive~Gt~~eL~ 608 (1091)
+. .+.+.... .+.|+|..+|. ++.+.. ||+|+ ++|+++..|+.+-|-
T Consensus 134 ~~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~~ 183 (189)
T 2bdt_A 134 EL-VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPLE 183 (189)
T ss_dssp HH-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC-------
T ss_pred HH-HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCchh
Confidence 66 66666553 35788889999 888765 99998 999999999987663
No 137
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.32 E-value=4.9e-15 Score=171.06 Aligned_cols=128 Identities=16% Similarity=0.148 Sum_probs=90.1
Q ss_pred cccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccC----CChHHHhhceeEEe---------c
Q 001371 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE----FQLQWIRKKIGLVS---------Q 467 (1091)
Q Consensus 401 vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~----~~~~~lr~~ia~V~---------Q 467 (1091)
+|+++ + .++|+.++|+||+||||||++++|+|+++|.+|+|.++|.++.. ++...++.++++++ |
T Consensus 158 ~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq 235 (418)
T 1p9r_A 158 NFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQ 235 (418)
T ss_dssp HHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGG
T ss_pred HHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhcc
Confidence 56666 4 37899999999999999999999999999999999999988742 11223445566654 9
Q ss_pred cCccc--c-----ccHHHHhccCCC---------CCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHH
Q 001371 468 EPVLF--T-----GSIKDNIAYGKD---------DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRI 531 (1091)
Q Consensus 468 ~~~Lf--~-----~TIreNI~~g~~---------~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRi 531 (1091)
+|-++ . .|+++|+.++.. ..+..+..+.+...++.++. ...+|||||+||
T Consensus 236 ~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~-------------~~~~LSgg~~QR- 301 (418)
T 1p9r_A 236 DPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFL-------------ISSSLLGVLAQR- 301 (418)
T ss_dssp CCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHH-------------HHHHEEEEEEEE-
T ss_pred CCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHHH-------------HHHHHHHHHHHH-
Confidence 88763 2 388888865310 01112233334444443321 235799999999
Q ss_pred HHHHHhhcCCCEEE
Q 001371 532 AIARAILKDPRILL 545 (1091)
Q Consensus 532 alARAll~~~~Ili 545 (1091)
||||+..+|++..
T Consensus 302 -LaraL~~~p~~~~ 314 (418)
T 1p9r_A 302 -LVRTLCPDCKEPY 314 (418)
T ss_dssp -EEEEECTTTCEEE
T ss_pred -hhhhhcCCCCccC
Confidence 9999999999876
No 138
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.31 E-value=7.1e-13 Score=148.95 Aligned_cols=123 Identities=15% Similarity=0.179 Sum_probs=82.9
Q ss_pred ccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCC-CCCcEEEEC-CccccCCChHHHhhceeEEeccCccccc-cH
Q 001371 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-PQAGEVLID-GINLKEFQLQWIRKKIGLVSQEPVLFTG-SI 476 (1091)
Q Consensus 400 ~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~-~~~G~I~id-g~~i~~~~~~~lr~~ia~V~Q~~~Lf~~-TI 476 (1091)
.-++++++. .+|++++|+||||||||||+++|+|+.. |..|+|.++ |.+.. ...+..+++++|+++++.. |+
T Consensus 204 ~gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~----tt~~~~i~~v~q~~~l~dtpgv 278 (358)
T 2rcn_A 204 DGLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH----TTTAARLYHFPHGGDVIDSPGV 278 (358)
T ss_dssp BTHHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHH
T ss_pred cCHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc----ceEEEEEEEECCCCEecCcccH
Confidence 357788875 4899999999999999999999999999 999999987 76542 2345689999999998875 89
Q ss_pred HHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhh
Q 001371 477 KDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1091)
Q Consensus 477 reNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll 538 (1091)
+++-+. ..+.+++.+. ..++++.+ |+.......-.+|| ||+||++||++++
T Consensus 279 ~e~~l~---~l~~~e~~~~-----~~e~l~~~--gl~~f~~~~~~~lS-G~~~r~ala~gli 329 (358)
T 2rcn_A 279 REFGLW---HLEPEQITQG-----FVEFHDYL--GHCKYRDCKHDADP-GCAIREAVENGAI 329 (358)
T ss_dssp HTCCCC---CCCHHHHHHT-----SGGGGGGT--TCSSSTTCCSSSCT-TCHHHHHHHHTSS
T ss_pred HHhhhc---CCCHHHHHHH-----HHHHHHHc--CCchhcCCCcccCC-HHHHHHHHHhcCC
Confidence 997443 3455554322 22333332 33333344456899 9999999999863
No 139
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.31 E-value=2.6e-12 Score=147.52 Aligned_cols=74 Identities=27% Similarity=0.420 Sum_probs=67.7
Q ss_pred CCCChHHHHHH------HHHHHhhcC-CCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhccCeEEEE
Q 001371 521 TQLSGGQKQRI------AIARAILKD-PRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVI 593 (1091)
Q Consensus 521 ~~LSGGQkQRi------alARAll~~-~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl 593 (1091)
..||||||||+ ++|||+..+ |++|||||||++||+.+...+.+.|.++.+++|+|+|||+......||++++|
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~~~~~d~~~~l 358 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVIINV 358 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGGGGGCSEEEEE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHHHhhCCEEEEE
Confidence 57999999988 678999999 99999999999999999999999998865667999999999877789999999
Q ss_pred e
Q 001371 594 H 594 (1091)
Q Consensus 594 ~ 594 (1091)
+
T Consensus 359 ~ 359 (371)
T 3auy_A 359 K 359 (371)
T ss_dssp E
T ss_pred E
Confidence 7
No 140
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.29 E-value=1.9e-13 Score=136.48 Aligned_cols=88 Identities=16% Similarity=0.099 Sum_probs=73.2
Q ss_pred EeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhceeEEe
Q 001371 387 RDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVS 466 (1091)
Q Consensus 387 ~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia~V~ 466 (1091)
+|++++|+ +..+++++||++++|++++|+||+|||||||+++|+|++ |++|+|.++|.++.+.. ..+ .+++
T Consensus 11 ~~~~~~~g---~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~~--~~~---~~~~ 81 (158)
T 1htw_A 11 EFSMLRFG---KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEEY--NIA---GKMI 81 (158)
T ss_dssp HHHHHHHH---HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEEE--EET---TEEE
T ss_pred HHHHHHHH---HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeeec--cCC---Ccce
Confidence 45566664 246899999999999999999999999999999999999 99999999999885321 112 2899
Q ss_pred ccCccccccHHHHhc-cC
Q 001371 467 QEPVLFTGSIKDNIA-YG 483 (1091)
Q Consensus 467 Q~~~Lf~~TIreNI~-~g 483 (1091)
|++.+|.-|++||+. +|
T Consensus 82 q~~~l~~ltv~e~l~~~g 99 (158)
T 1htw_A 82 YHFDLYRLADPEELEFMG 99 (158)
T ss_dssp EEEECTTCSCTTHHHHST
T ss_pred eccccccCCcHHHHHHcC
Confidence 999999889999985 45
No 141
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.28 E-value=2.1e-13 Score=147.69 Aligned_cols=166 Identities=16% Similarity=0.196 Sum_probs=105.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHh---ccCCCCCcEEEECCccccCCChHHHhhceeEEeccCcccc-ccHHHHhcc----
Q 001371 411 SGTTAALVGQSGSGKSTVISLIE---RFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFT-GSIKDNIAY---- 482 (1091)
Q Consensus 411 ~G~~vaIVG~sGsGKSTLl~ll~---g~~~~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~-~TIreNI~~---- 482 (1091)
++++++|+||+||||||++++|. |+..|+.|+|.++|.+.. ..+...+.+++|++.++. .|+.+|+..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS----TEVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT----CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC----ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999999 999999999988876532 234556777788776654 588888853
Q ss_pred ---------CCCCCCHHHHHHHHHHcccH--HHHhhCCC--CcccccccCCCCCChHHHHHHHHHHHh-hcCCCEEEee-
Q 001371 483 ---------GKDDATTEEIRVATELANAA--KFIDKLPQ--GIDTLVGEHGTQLSGGQKQRIAIARAI-LKDPRILLLD- 547 (1091)
Q Consensus 483 ---------g~~~~~~~~i~~a~~~a~l~--~~i~~lp~--G~~T~vge~G~~LSGGQkQRialARAl-l~~~~IliLD- 547 (1091)
|.+ .+.++.....+..... -++ ..|. ..+-....+...||| |+ ||+ +.+|++++||
T Consensus 102 ~~~~~~il~g~~-~~~~~~~~l~~~~~~~~vi~L-~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~ 172 (246)
T 2bbw_A 102 RRGQHWLLDGFP-RTLGQAEALDKICEVDLVISL-NIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDD 172 (246)
T ss_dssp CTTSCEEEESCC-CSHHHHHHHHTTCCCCEEEEE-ECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCT
T ss_pred cCCCeEEEECCC-CCHHHHHHHHhhcCCCEEEEE-ECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCccccccc
Confidence 112 1222222211111000 000 0000 001111223356898 66 899 9999999999
Q ss_pred ---CCCCCCCHHhHHHHHHHHHHHcCCC-eEEEEccCchhhhccCeEEEEeC
Q 001371 548 ---EATSALDAESEKVVQEALDRIMVNR-TTVIVAHRLSTVRNADMIAVIHR 595 (1091)
Q Consensus 548 ---E~tSaLD~~te~~i~~~l~~~~~~~-T~I~ItHrls~i~~aD~Iivl~~ 595 (1091)
|||+++|..++..+.+.++++.+.. ++ +......+++++++.
T Consensus 173 ~~~EP~~~ld~~~~~~i~~~l~~~~~~~~~v------~~~~~~~~~~~~id~ 218 (246)
T 2bbw_A 173 VTGEPLVQQEDDKPEAVAARLRQYKDVAKPV------IELYKSRGVLHQFSG 218 (246)
T ss_dssp TTCCBCBCCGGGSHHHHHHHHHHHHHHHHHH------HHHHHHTTCEEEEEC
T ss_pred ccccccccCCCCcHHHHHHHHHHHHHhHHHH------HHHHhhcCcEEEECC
Confidence 9999999999999988887754321 11 122334566777764
No 142
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.27 E-value=1.6e-14 Score=171.16 Aligned_cols=171 Identities=15% Similarity=0.188 Sum_probs=116.1
Q ss_pred ccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhceeEEeccCcccc--ccHH
Q 001371 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFT--GSIK 477 (1091)
Q Consensus 400 ~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~--~TIr 477 (1091)
.+++++++.+++|+.++|+||+||||||++++|+|+++|++|.|.++|.+--.++. +..++++.|++. .. .|.+
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~---~~~v~~~~r~~~-~~~~~~~~ 323 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYH---ENWIAEVTRTGM-GEGEIDMY 323 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCC---SSEEEEECBCCS-SSCCBCHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCC---CCeEEEEeeccc-ccCCcCHH
Confidence 46889999999999999999999999999999999999999999999875322221 346778887765 33 2666
Q ss_pred HHhccC---CC------CCCHHHHHHHHHHcc-------------cHHHHhhC---CCCcccccc-------cCCCCCCh
Q 001371 478 DNIAYG---KD------DATTEEIRVATELAN-------------AAKFIDKL---PQGIDTLVG-------EHGTQLSG 525 (1091)
Q Consensus 478 eNI~~g---~~------~~~~~~i~~a~~~a~-------------l~~~i~~l---p~G~~T~vg-------e~G~~LSG 525 (1091)
+++... +| +.+.++...+++.++ +.+.+.+| |.|....+. .....+||
T Consensus 324 ~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~ 403 (511)
T 2oap_1 324 DLLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRG 403 (511)
T ss_dssp HHHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESS
T ss_pred HHHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeC
Confidence 665322 22 345555555555543 22333332 333332222 22345799
Q ss_pred HHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEE--EccCchhhhc
Q 001371 526 GQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVI--VAHRLSTVRN 586 (1091)
Q Consensus 526 GQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~--ItHrls~i~~ 586 (1091)
|||||.++|. + | |+++|+.+.+.+.+.|.++. .++|+++ +||.++.+..
T Consensus 404 G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~ 455 (511)
T 2oap_1 404 NTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMAD 455 (511)
T ss_dssp SCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHH
T ss_pred CCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHH
Confidence 9999988752 1 6 99999987766655555543 3678875 8999987753
No 143
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.27 E-value=2.3e-12 Score=147.44 Aligned_cols=138 Identities=17% Similarity=0.215 Sum_probs=80.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc-cCCCCCcEEEECCccccCCChHHHhhceeEEeccCcccc-ccHHHHhccCCCCCCHHH
Q 001371 414 TAALVGQSGSGKSTVISLIER-FYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFT-GSIKDNIAYGKDDATTEE 491 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g-~~~~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~-~TIreNI~~g~~~~~~~~ 491 (1091)
.+.|+||+|+||||++++|.| ++.|..|.+.++|.+...... -+..+++++|.+++.- .+- .+. .+.+.
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-----~~~--~~~~~ 108 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASN--RKLELNVVSSPYHLEITPSD-----MGN--NDRIV 108 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEEEECCC-----------CCHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccc--ccceeeeecccceEEecHhh-----cCC--cchHH
Confidence 499999999999999999999 789999999999988764332 2678999999987632 110 111 11222
Q ss_pred HHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCC
Q 001371 492 IRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVN 571 (1091)
Q Consensus 492 i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~ 571 (1091)
+.+.++.+ .... +++..+ .||| +..+|+|+|||||++ ||+.+.+.+.+.+.+..++
T Consensus 109 ~~~~i~~~-----~~~~--~~~~~~-----~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~ 164 (354)
T 1sxj_E 109 IQELLKEV-----AQME--QVDFQD-----SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKN 164 (354)
T ss_dssp HHHHHHHH-----TTTT--C----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTT
T ss_pred HHHHHHHH-----HHhc--cccccc-----cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCC
Confidence 33332221 1111 111111 5676 778999999999999 9999999999999887677
Q ss_pred CeEEEEccCchhh
Q 001371 572 RTTVIVAHRLSTV 584 (1091)
Q Consensus 572 ~T~I~ItHrls~i 584 (1091)
.++|++||+++.+
T Consensus 165 ~~~Il~t~~~~~l 177 (354)
T 1sxj_E 165 IRLIMVCDSMSPI 177 (354)
T ss_dssp EEEEEEESCSCSS
T ss_pred CEEEEEeCCHHHH
Confidence 8999999997643
No 144
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.24 E-value=1.2e-11 Score=142.05 Aligned_cols=146 Identities=16% Similarity=0.268 Sum_probs=95.8
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHH--HhccCCCCCc-----EEEECCccc-cCCChHHHhhceeEEeccCccccccHHHH
Q 001371 408 SISSGTTAALVGQSGSGKSTVISL--IERFYDPQAG-----EVLIDGINL-KEFQLQWIRKKIGLVSQEPVLFTGSIKDN 479 (1091)
Q Consensus 408 ~i~~G~~vaIVG~sGsGKSTLl~l--l~g~~~~~~G-----~I~idg~~i-~~~~~~~lr~~ia~V~Q~~~Lf~~TIreN 479 (1091)
-|++|++++|+||+|||||||+.. +.+..+++.| .+++++.+. .......+++++++.+| ++.+|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~-------~vlen 246 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD-------DALNN 246 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-------HHHHT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH-------hHhhc
Confidence 589999999999999999999994 4566665444 889998763 23334445667787665 67888
Q ss_pred hccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhh--cCCCEEEeeCCCCCCCHHh
Q 001371 480 IAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL--KDPRILLLDEATSALDAES 557 (1091)
Q Consensus 480 I~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll--~~~~IliLDE~tSaLD~~t 557 (1091)
+.+..+ .+.++..+. +.-+++++ .+|+++++||+++.+|++.
T Consensus 247 i~~~~~-~~~~~~~~~-----------------------------------l~~~~~~l~~~~~~llVIDs~t~~~~~~~ 290 (400)
T 3lda_A 247 VAYARA-YNADHQLRL-----------------------------------LDAAAQMMSESRFSLIVVDSVMALYRTDF 290 (400)
T ss_dssp EEEEEC-CSHHHHHHH-----------------------------------HHHHHHHHHHSCEEEEEEETGGGGCC---
T ss_pred EEEecc-CChHHHHHH-----------------------------------HHHHHHHHHhcCCceEEecchhhhCchhh
Confidence 887654 232222222 21122221 4799999999999999753
Q ss_pred H------------HHHHHHHHHHc--CCCeEEEEccCch-------------------hhh-ccCeEEEEeCC
Q 001371 558 E------------KVVQEALDRIM--VNRTTVIVAHRLS-------------------TVR-NADMIAVIHRG 596 (1091)
Q Consensus 558 e------------~~i~~~l~~~~--~~~T~I~ItHrls-------------------~i~-~aD~Iivl~~G 596 (1091)
. ..+.+.|+++. .+.|+|+|+|-.. .+. .||.+++|++|
T Consensus 291 sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~ 363 (400)
T 3lda_A 291 SGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKG 363 (400)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEEC
T ss_pred cCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEec
Confidence 2 34445555543 3789999999832 123 37888888765
No 145
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.23 E-value=2.6e-13 Score=151.81 Aligned_cols=147 Identities=18% Similarity=0.140 Sum_probs=96.7
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCCh----HHHhhce--eEEeccCcccc-ccHHHHh
Q 001371 408 SISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL----QWIRKKI--GLVSQEPVLFT-GSIKDNI 480 (1091)
Q Consensus 408 ~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~----~~lr~~i--a~V~Q~~~Lf~-~TIreNI 480 (1091)
..++|++++||||+||||||+++.|.|++.|++|+|.++|.|+..... +.+++++ .+++|++.++. .|++||+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 346899999999999999999999999999999999999999877653 3345554 49999988775 5899998
Q ss_pred ccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHH
Q 001371 481 AYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKV 560 (1091)
Q Consensus 481 ~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~IliLDE~tSaLD~~te~~ 560 (1091)
.++.. +.. +.+ =.||. |-.. .--.=-++.-.++|++..++++++||.+|. .|....
T Consensus 205 ~~~~~-----------~~~---d~v-----liDta-G~~~-~~~~l~~eL~~i~ral~~de~llvLDa~t~-~~~~~~-- 260 (328)
T 3e70_C 205 QHAKA-----------RGI---DVV-----LIDTA-GRSE-TNRNLMDEMKKIARVTKPNLVIFVGDALAG-NAIVEQ-- 260 (328)
T ss_dssp HHHHH-----------HTC---SEE-----EEEEC-CSCC-TTTCHHHHHHHHHHHHCCSEEEEEEEGGGT-THHHHH--
T ss_pred HHHHh-----------ccc---hhh-----HHhhc-cchh-HHHHHHHHHHHHHHHhcCCCCEEEEecHHH-HHHHHH--
Confidence 75420 000 000 01221 1000 001112344458999998888889985554 333211
Q ss_pred HHHHHHHHcCCCeEEEEccC
Q 001371 561 VQEALDRIMVNRTTVIVAHR 580 (1091)
Q Consensus 561 i~~~l~~~~~~~T~I~ItHr 580 (1091)
.+.+.+ ..+.|.|++||-
T Consensus 261 -~~~~~~-~~~it~iilTKl 278 (328)
T 3e70_C 261 -ARQFNE-AVKIDGIILTKL 278 (328)
T ss_dssp -HHHHHH-HSCCCEEEEECG
T ss_pred -HHHHHH-hcCCCEEEEeCc
Confidence 122222 237899999993
No 146
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.20 E-value=1.6e-11 Score=121.52 Aligned_cols=91 Identities=16% Similarity=0.223 Sum_probs=68.4
Q ss_pred cccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCc--EEEECCccccCCChHHHhhceeEEeccCccccccHHH
Q 001371 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG--EVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKD 478 (1091)
Q Consensus 401 vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G--~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIre 478 (1091)
+|+++ +|+.++|+||+|||||||++++.+++.+ +| .+.+++.++...
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~~------------------------- 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPLT------------------------- 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCCC-------------------------
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhHH-------------------------
Confidence 56666 8999999999999999999999999987 57 555555332110
Q ss_pred HhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhH
Q 001371 479 NIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE 558 (1091)
Q Consensus 479 NI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~IliLDE~tSaLD~~te 558 (1091)
+++.+|++|+||||++ +|...+
T Consensus 79 ---------------------------------------------------------~~~~~~~lLilDE~~~-~~~~~~ 100 (149)
T 2kjq_A 79 ---------------------------------------------------------DAAFEAEYLAVDQVEK-LGNEEQ 100 (149)
T ss_dssp ---------------------------------------------------------GGGGGCSEEEEESTTC-CCSHHH
T ss_pred ---------------------------------------------------------HHHhCCCEEEEeCccc-cChHHH
Confidence 3467899999999998 555547
Q ss_pred HHHHHHHHHHc-CCCe-EEEEccC
Q 001371 559 KVVQEALDRIM-VNRT-TVIVAHR 580 (1091)
Q Consensus 559 ~~i~~~l~~~~-~~~T-~I~ItHr 580 (1091)
+.+.+.+.... +++| +|++||+
T Consensus 101 ~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 101 ALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEESS
T ss_pred HHHHHHHHHHHHcCCcEEEEECCC
Confidence 77777776654 4577 6666664
No 147
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.17 E-value=1.6e-13 Score=147.02 Aligned_cols=160 Identities=19% Similarity=0.199 Sum_probs=72.7
Q ss_pred ccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHh-ccC------------CCCCcEEEECCccccCCChHHHhhceeEEe
Q 001371 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIE-RFY------------DPQAGEVLIDGINLKEFQLQWIRKKIGLVS 466 (1091)
Q Consensus 400 ~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~-g~~------------~~~~G~I~idg~~i~~~~~~~lr~~ia~V~ 466 (1091)
...+++||++++|++++|+||||||||||+++|. |++ +|..|.+ +|.++...+...++.. ..
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~~--~g~~~~~~~~~~~~~~---~~ 89 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEK--EGKDYYFVDREEFLRL---CS 89 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTCC--BTTTBEECCHHHHHHH---HH
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCcccc--CCCeEEEecHHHhhhh---hh
Confidence 4678999999999999999999999999999999 999 6666654 5555444444443322 12
Q ss_pred ccCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCCh--HHHHHH-HHHH-HhhcCCC
Q 001371 467 QEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSG--GQKQRI-AIAR-AILKDPR 542 (1091)
Q Consensus 467 Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSG--GQkQRi-alAR-All~~~~ 542 (1091)
++..++..++.+|+ +|.+.. ++.++++... ...+. ..+.| .-+++. .-++ .++..|+
T Consensus 90 ~~~~~~~~~~~~~~-~~~~~~---~i~~~~~~~~------------~vild---~~~~g~~~~~~~~~~~~~~v~v~~~~ 150 (231)
T 3lnc_A 90 NGEIIEHAEVFGNF-YGVPRK---NLEDNVDKGV------------STLLV---IDWQGAFKFMEMMREHVVSIFIMPPS 150 (231)
T ss_dssp TTCEEEEEEETTEE-EEEECT---THHHHHHHTC------------EEEEE---CCHHHHHHHHHHSGGGEEEEEEECSC
T ss_pred cCceehhhhhcccc-CCCCHH---HHHHHHHcCC------------eEEEE---cCHHHHHHHHHhcCCCeEEEEEECCc
Confidence 34444444555554 344322 2333333211 11100 00111 114444 2233 3457788
Q ss_pred EEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhccCeEEE
Q 001371 543 ILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAV 592 (1091)
Q Consensus 543 IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iiv 592 (1091)
..+|||.+++.|..++..+++.|.+.... ++....+|.|++
T Consensus 151 ~~~l~~Rl~~R~~~~~~~i~~rl~~~~~~---------~~~~~~~d~vI~ 191 (231)
T 3lnc_A 151 MEELRRRLCGRRADDSEVVEARLKGAAFE---------ISHCEAYDYVIV 191 (231)
T ss_dssp HHHHHHC--------------CHHHHHHH---------HTTGGGSSEEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHH---------HhhhcCCeEEEE
Confidence 88999999999999888888777654321 223467888776
No 148
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.15 E-value=1.4e-13 Score=150.92 Aligned_cols=129 Identities=16% Similarity=0.183 Sum_probs=97.5
Q ss_pred ccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhceeEEeccC-cccc-ccHH
Q 001371 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEP-VLFT-GSIK 477 (1091)
Q Consensus 400 ~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~-~Lf~-~TIr 477 (1091)
.+++++++++++| ++|+||+|||||||+++|.|++.+ |.|.++|.++.+......++++++++|++ ..+. -++.
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~ 109 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFF 109 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEee
Confidence 5789999999999 999999999999999999999887 79999999998777777788999999986 3443 4778
Q ss_pred HHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCCEEEeeCCCC
Q 001371 478 DNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS 551 (1091)
Q Consensus 478 eNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~IliLDE~tS 551 (1091)
|||....+....++.. ...+.+ .+.-..|||||+||..|++|+..+|++| |||+.
T Consensus 110 Deid~~~~~r~~~~~~------~~~~~~-----------~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~ 164 (274)
T 2x8a_A 110 DEVDALCPRRSDRETG------ASVRVV-----------NQLLTEMDGLEARQQVFIMAATNRPDII--DPAIL 164 (274)
T ss_dssp ETCTTTCC---------------CTTHH-----------HHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHH
T ss_pred ehhhhhhcccCCCcch------HHHHHH-----------HHHHHhhhcccccCCEEEEeecCChhhC--CHhhc
Confidence 8887654321111100 011111 1122358999999999999999999975 99975
No 149
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.15 E-value=3.3e-12 Score=142.05 Aligned_cols=115 Identities=16% Similarity=0.111 Sum_probs=81.1
Q ss_pred EEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEE---CCccccCCChHHHh-hceeEEeccCccc------cccH
Q 001371 407 ISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI---DGINLKEFQLQWIR-KKIGLVSQEPVLF------TGSI 476 (1091)
Q Consensus 407 l~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~i---dg~~i~~~~~~~lr-~~ia~V~Q~~~Lf------~~TI 476 (1091)
+++.+|++++++||||||||||+++|+ +.+|..|+|.+ +|.++..... ..+ +.++||+|+|-+. +-|+
T Consensus 160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~-~~~~~~~g~v~d~pg~~~~~l~~~lt~ 237 (302)
T 2yv5_A 160 VDYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR-LIPFGKGSFVGDTPGFSKVEATMFVKP 237 (302)
T ss_dssp HHHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE-EEEETTTEEEESSCCCSSCCGGGTSCG
T ss_pred HhhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE-EEEcCCCcEEEECcCcCcCcccccCCH
Confidence 345679999999999999999999999 99999999999 9988876442 222 3699999999653 4578
Q ss_pred HHHh--ccC---------C----CCCCHHHHHHHHHHcccHH-HHhhCCCCcccccccCCCCCChHHHHHHHHHH
Q 001371 477 KDNI--AYG---------K----DDATTEEIRVATELANAAK-FIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1091)
Q Consensus 477 reNI--~~g---------~----~~~~~~~i~~a~~~a~l~~-~i~~lp~G~~T~vge~G~~LSGGQkQRialAR 535 (1091)
||+ .|+ . .....+.+.++++..++.+ ..++.| ..|||.+++++.|||
T Consensus 238 -e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~-----------~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 238 -REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL-----------KIIKVYLEEIKELCR 300 (302)
T ss_dssp -GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH-----------HHTTCCCTTHHHHSS
T ss_pred -HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH-----------HHHHHHHHHHHHHhc
Confidence 898 553 0 1122356788888888765 333332 358998888899988
No 150
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.12 E-value=7.6e-12 Score=138.31 Aligned_cols=83 Identities=16% Similarity=0.259 Sum_probs=58.7
Q ss_pred cccHHHHHHHHHHHHHHHcCCCCCCCCCCCCCcccccceeEEEeeeeeeCCCCCCCccccccceeeeCCCEEEEEcCCCC
Q 001371 1003 SSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKVSAKLNFQFH 1082 (1091)
Q Consensus 1003 ~~~~~~~~~aa~~i~~~i~~~~~~~~~~~~~~~~~~~~G~I~f~nVs~~Y~~rp~~~VLk~is~~I~~Ge~valVG~SG~ 1082 (1091)
+++.+.+..++.+++.+++.+++.+.... +.+.++.+|.|+|+||+|+|+.+ .+||+||||+|++||++||||||||
T Consensus 15 ~~~~~~~~~~~~ri~~~l~~~~~~~~~~~-~~~~~~~~~~i~~~~vs~~y~~~--~~vL~~isl~i~~Ge~vaivG~sGs 91 (306)
T 3nh6_A 15 VPRGSHMFIDMENMFDLLKEETEVKDLPG-AGPLRFQKGRIEFENVHFSYADG--RETLQDVSFTVMPGQTLALVGPSGA 91 (306)
T ss_dssp ----CCTTCCHHHHHHHHHHHHSCCCCTT-CBCCCCSSCCEEEEEEEEESSTT--CEEEEEEEEEECTTCEEEEESSSCH
T ss_pred chhHHHHHHHHHHHHHHHhCCcccccccc-ccccCCCCCeEEEEEEEEEcCCC--CceeeeeeEEEcCCCEEEEECCCCc
Confidence 44555556667778877765443322111 11122347899999999999743 3699999999999999999999999
Q ss_pred Cccccc
Q 001371 1083 SLKQLT 1088 (1091)
Q Consensus 1083 ~~~~~~ 1088 (1091)
|||||-
T Consensus 92 GKSTLl 97 (306)
T 3nh6_A 92 GKSTIL 97 (306)
T ss_dssp HHHHHH
T ss_pred hHHHHH
Confidence 999974
No 151
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.11 E-value=1.6e-12 Score=138.78 Aligned_cols=129 Identities=16% Similarity=0.183 Sum_probs=105.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccC---CCCCcEEEE--------CCcccc-CCChHHHhhceeEEeccC------ccc
Q 001371 411 SGTTAALVGQSGSGKSTVISLIERFY---DPQAGEVLI--------DGINLK-EFQLQWIRKKIGLVSQEP------VLF 472 (1091)
Q Consensus 411 ~G~~vaIVG~sGsGKSTLl~ll~g~~---~~~~G~I~i--------dg~~i~-~~~~~~lr~~ia~V~Q~~------~Lf 472 (1091)
.+.+++|+||+||||||++++|.+.+ .++.|.+.. +|.++. +....++++++++++|++ .++
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 83 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILE 83 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEET
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEEC
Confidence 35789999999999999999999887 788899887 787776 356778999999999987 456
Q ss_pred cccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCccccc-ccCCCCCChHHHHHHHHHHHhhcCCCEEEeeCCCC
Q 001371 473 TGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLV-GEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS 551 (1091)
Q Consensus 473 ~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~v-ge~G~~LSGGQkQRialARAll~~~~IliLDE~tS 551 (1091)
..++.+++. ++++..++..+.+++.+.....+.++.+ .++|.-++|+ .++++++++++++|++++..
T Consensus 84 ~~~v~~~~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~-----~~~~~~~~~~d~~i~l~~~~ 151 (227)
T 1cke_A 84 GEDVSGEIR-------TQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGR-----DMGTVVFPDAPVKIFLDASS 151 (227)
T ss_dssp TEECHHHHT-------SHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEES-----SCCCCCCTTCSEEEEEECCH
T ss_pred CeeCchhhC-------CHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECC-----CccceEecCCCEEEEEeCCH
Confidence 667777753 4678889999999999988777776666 3567888887 57778899999999988754
No 152
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.10 E-value=3.5e-11 Score=123.40 Aligned_cols=111 Identities=15% Similarity=0.189 Sum_probs=75.1
Q ss_pred eEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhceeEEeccCccccccHHHHhccCCC
Q 001371 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKD 485 (1091)
Q Consensus 406 sl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~ 485 (1091)
+|++++|+.++|+||+|+|||||++++.+.+.|.+|.. +.|+ +..
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~------------------~~~~---------~~~-------- 76 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR------------------GYFF---------DTK-------- 76 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC------------------CCEE---------EHH--------
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe------------------EEEE---------EHH--------
Confidence 56778999999999999999999999999997766631 1121 111
Q ss_pred CCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCCEEEeeCCCC-CCCHHhHHHHHHH
Q 001371 486 DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS-ALDAESEKVVQEA 564 (1091)
Q Consensus 486 ~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~IliLDE~tS-aLD~~te~~i~~~ 564 (1091)
++.+-+.. .... + ... -+...+.+|++|+||||++ ++|+.....+.+.
T Consensus 77 -----~~~~~~~~-----~~~~---~--------~~~----------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~l 125 (180)
T 3ec2_A 77 -----DLIFRLKH-----LMDE---G--------KDT----------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYI 125 (180)
T ss_dssp -----HHHHHHHH-----HHHH---T--------CCS----------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHH
T ss_pred -----HHHHHHHH-----HhcC---c--------hHH----------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHH
Confidence 11111110 0000 0 000 1122345999999999996 8999988888888
Q ss_pred HHHHc-CCCeEEEEccCch
Q 001371 565 LDRIM-VNRTTVIVAHRLS 582 (1091)
Q Consensus 565 l~~~~-~~~T~I~ItHrls 582 (1091)
+.... +++++|++||...
T Consensus 126 l~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 126 ITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp HHHHHHTTCEEEEECCCCS
T ss_pred HHHHHHcCCCEEEEcCCCh
Confidence 87654 6889999999864
No 153
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.01 E-value=1.2e-10 Score=134.14 Aligned_cols=153 Identities=18% Similarity=0.168 Sum_probs=93.3
Q ss_pred ccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhceeEEeccCccccccHHHHhc
Q 001371 402 FSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIA 481 (1091)
Q Consensus 402 L~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIreNI~ 481 (1091)
-++++|+++.|+.++|||++|||||||++.|.+..+ .+.+.+..++ ..++++|.|+. -..-++.|+.-
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftTl-----~p~~G~V~~~~-~~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTTL-----SPNLGVVEVSE-EERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCSS-----CCEEEEEECSS-SCEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCccccee-----cceeeEEEecC-cceEEEEeccc
Confidence 479999999999999999999999999999999843 3445444433 34577777764 11123333322
Q ss_pred cCC-----CCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHH
Q 001371 482 YGK-----DDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 556 (1091)
Q Consensus 482 ~g~-----~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~IliLDE~tSaLD~~ 556 (1091)
+.. .......+ +..+.|.. .+..+.-. +.+ -.+||+||+||.++||++..+|.|++| +.+|..
T Consensus 215 li~~a~~~~~L~~~fl-~~~era~~--lL~vvDls-~~~----~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~ 282 (416)
T 1udx_A 215 IIEGASEGKGLGLEFL-RHIARTRV--LLYVLDAA-DEP----LKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLL 282 (416)
T ss_dssp CCCCGGGSCCSCHHHH-HHHTSSSE--EEEEEETT-SCH----HHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTS
T ss_pred cccchhhhhhhhHHHH-HHHHHHHh--hhEEeCCc-cCC----HHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChh
Confidence 211 00112211 11111111 11111000 112 236999999999999999999999999 899987
Q ss_pred hHHHHHHHHHHHc--CCCeEEEEcc
Q 001371 557 SEKVVQEALDRIM--VNRTTVIVAH 579 (1091)
Q Consensus 557 te~~i~~~l~~~~--~~~T~I~ItH 579 (1091)
....+ +.+.+.. .+.++|.||.
T Consensus 283 ~~~~~-~~l~~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 283 EEEAV-KALADALAREGLAVLPVSA 306 (416)
T ss_dssp CHHHH-HHHHHHHHTTTSCEEECCT
T ss_pred hHHHH-HHHHHHHHhcCCeEEEEEC
Confidence 65333 3333332 3557777664
No 154
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.98 E-value=5.1e-10 Score=117.10 Aligned_cols=139 Identities=12% Similarity=0.145 Sum_probs=87.8
Q ss_pred eEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhceeEEeccCccccc-cHHHHhccCC
Q 001371 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYGK 484 (1091)
Q Consensus 406 sl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~-TIreNI~~g~ 484 (1091)
|+++++|++++|+||||||||||+++|.|+++ .+.++|.++...+....+..++|++|++.+|.. +..+|+.+..
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHA 76 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeee
Confidence 57788999999999999999999999999974 688888888776665567789999999988765 5555554221
Q ss_pred C------CCCHHHHHHHHHHc----------ccHHHHhhCCCCccc------------ccccCCCCCChHHHHHHHHHHH
Q 001371 485 D------DATTEEIRVATELA----------NAAKFIDKLPQGIDT------------LVGEHGTQLSGGQKQRIAIARA 536 (1091)
Q Consensus 485 ~------~~~~~~i~~a~~~a----------~l~~~i~~lp~G~~T------------~vge~G~~LSGGQkQRialARA 536 (1091)
. ....+++.++++.. ++.......|+.+-. .+-++|..-....++|++-++.
T Consensus 77 ~~~~~~~~~~~~~i~~~l~~g~~vi~d~~~~~~~~~~~~~~~~~~v~~~~~~~e~l~~Rl~~R~~~~~~~i~~rl~~~~~ 156 (205)
T 3tr0_A 77 TIYERHYGTEKDWVLRQLKAGRDVLLEIDWQGARQIRELFPPALSIFILPPSIEALRERLIKRRQDDTAIIEQRLALARE 156 (205)
T ss_dssp EETTEEEEEEHHHHHHHHHTTCEEEEECCHHHHHHHHHHCTTCEEEEEECSCHHHHHHHHHTCTTSCSSTHHHHHHHHHH
T ss_pred eeecccccchHHHHHHHHHcCCeEEEEECHHHHHHHHHhCCCcEEEEEECcCHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 0 01234455554431 222333334433111 1224554444566788877776
Q ss_pred hh---cCCCEEEeeC
Q 001371 537 IL---KDPRILLLDE 548 (1091)
Q Consensus 537 ll---~~~~IliLDE 548 (1091)
.. +.++.+|.++
T Consensus 157 ~~~~~~~~d~vi~n~ 171 (205)
T 3tr0_A 157 EMAHYKEFDYLVVND 171 (205)
T ss_dssp HHTTGGGCSEEEECS
T ss_pred HHhcccCCCEEEECC
Confidence 54 4567776654
No 155
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.98 E-value=4.8e-11 Score=129.35 Aligned_cols=109 Identities=15% Similarity=0.150 Sum_probs=82.9
Q ss_pred ccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHh---ccCCCCCcEEE--------ECCccc-cCCChHHHhhceeEEec
Q 001371 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIE---RFYDPQAGEVL--------IDGINL-KEFQLQWIRKKIGLVSQ 467 (1091)
Q Consensus 400 ~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~---g~~~~~~G~I~--------idg~~i-~~~~~~~lr~~ia~V~Q 467 (1091)
+++++.+ ++|++++|+||+||||||++++|. |++.|+.|.|. .+|.++ .......+++++++++|
T Consensus 18 ~~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 94 (252)
T 4e22_A 18 LERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFV 94 (252)
T ss_dssp -----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEE
T ss_pred hhhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEe
Confidence 3455544 789999999999999999999999 99999999999 999998 45668889999999995
Q ss_pred ------cCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCccccccc
Q 001371 468 ------EPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGE 518 (1091)
Q Consensus 468 ------~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge 518 (1091)
..++++.++.+||. .+++..++..+..++.+......+...+++
T Consensus 95 ~~~~~~~~~l~~~~v~~~i~-------~~~v~~~~s~~~~~~~vr~~l~~~~~~~a~ 144 (252)
T 4e22_A 95 SQNGQLQVILEGEDVSNEIR-------TETVGNTASQAAAFPRVREALLRRQRAFRE 144 (252)
T ss_dssp EETTEEEEEETTEECTTGGG-------SHHHHHHHHHHTTSHHHHHHHHHHHHTTCC
T ss_pred cCCCCceEEECCeehhHHHH-------HHHHHHHHHHhcccHHHHHHHHHHHHHHhh
Confidence 45677788888875 245666777777777776655444444443
No 156
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.98 E-value=1e-10 Score=130.13 Aligned_cols=102 Identities=19% Similarity=0.148 Sum_probs=69.9
Q ss_pred EEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEE---CCccccCCChHHHhhceeEEeccCc-------------
Q 001371 407 ISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI---DGINLKEFQLQWIRKKIGLVSQEPV------------- 470 (1091)
Q Consensus 407 l~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~i---dg~~i~~~~~~~lr~~ia~V~Q~~~------------- 470 (1091)
|++.+|++++|+||||||||||+++|.|+..|+.|+|.+ +|.++.........++++||+|+|-
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 456789999999999999999999999999999999999 9998876542211236999999985
Q ss_pred ---ccc-ccHHHHhccCCC---CCCHHHHHHHHHHcccH-HHHhhCC
Q 001371 471 ---LFT-GSIKDNIAYGKD---DATTEEIRVATELANAA-KFIDKLP 509 (1091)
Q Consensus 471 ---Lf~-~TIreNI~~g~~---~~~~~~i~~a~~~a~l~-~~i~~lp 509 (1091)
+|. -|+ +|+.|+.. .....++.++++..+|. +..++.|
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~ 289 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYV 289 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHH
Confidence 343 478 99998531 22345788999999994 5555555
No 157
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.93 E-value=2.8e-11 Score=135.18 Aligned_cols=140 Identities=18% Similarity=0.204 Sum_probs=96.8
Q ss_pred CCcEEEEeEEEECCCCCCCccccceeEEe-------------------eCCCEEEEEcCCCCcHHHHHHHHhccCC--CC
Q 001371 381 RGDIELRDVYFSYPARPNEQIFSGFSISI-------------------SSGTTAALVGQSGSGKSTVISLIERFYD--PQ 439 (1091)
Q Consensus 381 ~~~I~~~~vsf~Y~~~~~~~vL~~isl~i-------------------~~G~~vaIVG~sGsGKSTLl~ll~g~~~--~~ 439 (1091)
.+.|+++||++.|. ++++++++.+ ++|+++||+||+|||||||+++|.|++. |+
T Consensus 35 ~~~i~~~~v~~~y~-----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~ 109 (308)
T 1sq5_A 35 NEDLSLEEVAEIYL-----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPE 109 (308)
T ss_dssp CTTCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT
T ss_pred ccccchHhHHHHHH-----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC
Confidence 35689999999993 6999999998 8999999999999999999999999998 99
Q ss_pred CcEEEE---CCccccCCChHHHhhceeEEeccCccc-cccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccc
Q 001371 440 AGEVLI---DGINLKEFQLQWIRKKIGLVSQEPVLF-TGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTL 515 (1091)
Q Consensus 440 ~G~I~i---dg~~i~~~~~~~lr~~ia~V~Q~~~Lf-~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~ 515 (1091)
+|+|.+ ||.+.. ...++.++++ |+.-++ .-|+.+|+.+.. .+..|.. .
T Consensus 110 ~G~i~vi~~d~~~~~----~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~----------------------~l~~~~~-~ 161 (308)
T 1sq5_A 110 HRRVELITTDGFLHP----NQVLKERGLM-KKKGFPESYDMHRLVKFVS----------------------DLKSGVP-N 161 (308)
T ss_dssp CCCEEEEEGGGGBCC----HHHHHHHTCT-TCTTSGGGBCHHHHHHHHH----------------------HHTTTCS-C
T ss_pred CCeEEEEecCCccCc----HHHHHhCCEe-ecCCCCCCccHHHHHHHHH----------------------HHhCCCC-c
Confidence 999999 987742 2356778999 765543 236666654321 1111111 0
Q ss_pred cccCCCCCChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCH
Q 001371 516 VGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555 (1091)
Q Consensus 516 vge~G~~LSGGQkQRialARAll~~~~IliLDE~tSaLD~ 555 (1091)
+--.-...+.+ +|+..+.+...+++++|+|.|..-.|.
T Consensus 162 i~~P~~~~~~~--~~~~~~~~~~~~~~ivIlEG~~l~~~~ 199 (308)
T 1sq5_A 162 VTAPVYSHLIY--DVIPDGDKTVVQPDILILEGLNVLQSG 199 (308)
T ss_dssp EEECCEETTTT--EECTTCCEEEC-CCEEEEECTTTTCCG
T ss_pred eeccccccccc--CcccccceecCCCCEEEECchhhCCCc
Confidence 00000111111 344333456678999999999988774
No 158
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.90 E-value=1.8e-10 Score=118.69 Aligned_cols=128 Identities=20% Similarity=0.335 Sum_probs=69.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhccCC-------------CCCcEEEECCccccCCChHHHhhceeEEeccCccccccHHH
Q 001371 412 GTTAALVGQSGSGKSTVISLIERFYD-------------PQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKD 478 (1091)
Q Consensus 412 G~~vaIVG~sGsGKSTLl~ll~g~~~-------------~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIre 478 (1091)
|+.++|+||||||||||+++|+|+++ |..|++ +|.++...+...++..+. |+..+++.++..
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~--~g~~~~~~~~~~~~~~~~---~~~~~e~~~~~~ 75 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEFKSMIK---NNEFIEWAQFSG 75 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCC--BTTTBEECCHHHHHHHHH---TTCEEEEEEETT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCcc--CCeeeeecCHHHHHHHHh---hcceeeEEEEec
Confidence 67899999999999999999999998 888886 898888777777766543 677778888888
Q ss_pred HhccCCCCCCHHHHHHHHHHcc---c------HHHHhh--------------CCCCcccccccCCCCCChHHHHHHHHHH
Q 001371 479 NIAYGKDDATTEEIRVATELAN---A------AKFIDK--------------LPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1091)
Q Consensus 479 NI~~g~~~~~~~~i~~a~~~a~---l------~~~i~~--------------lp~G~~T~vge~G~~LSGGQkQRialAR 535 (1091)
|+ ||.+ .+++.++++... + ...+.. -++-+...+-++|..-....+||++-|+
T Consensus 76 ~~-yg~~---~~~i~~~l~~g~~~il~~~~~g~~~l~~~~~~~~~~i~i~~p~~~~l~~Rl~~Rg~~~~~~i~~rl~~~~ 151 (186)
T 3a00_A 76 NY-YGST---VASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAAQ 151 (186)
T ss_dssp EE-EEEE---HHHHHHHHHTTCEEEEECCHHHHHHHHTCGGGCCEEEEEECSCC--------------------------
T ss_pred ee-ccCc---HHHHHHHHHcCCeEEEEEcHHHHHHHHHhcCCCeEEEEEECcCHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 86 6654 344555544311 1 111222 1245566677788877788899999998
Q ss_pred Hhh-----cCCCEEEeeC
Q 001371 536 AIL-----KDPRILLLDE 548 (1091)
Q Consensus 536 All-----~~~~IliLDE 548 (1091)
+-+ +.+|.+|..|
T Consensus 152 ~~~~~~~~~~~d~vi~nd 169 (186)
T 3a00_A 152 AELAYAETGAHDKVIVND 169 (186)
T ss_dssp -------CCCCSEEEECS
T ss_pred HHHHhhcccCCcEEEECc
Confidence 765 5667777665
No 159
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.89 E-value=3.4e-10 Score=116.38 Aligned_cols=82 Identities=23% Similarity=0.344 Sum_probs=68.8
Q ss_pred EEeeCCCEEEEEcCCCCcHHHHHHHHhccCC-------------CCCcEEEECCccccCCChHHHhhceeEEeccCcccc
Q 001371 407 ISISSGTTAALVGQSGSGKSTVISLIERFYD-------------PQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFT 473 (1091)
Q Consensus 407 l~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~-------------~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~ 473 (1091)
+...+|++++|+||||||||||+++|++.++ |..|+ +||++..-++.+.+++.+ .|+.+++.
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i---~~~~fle~ 88 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNI---SANEFLEF 88 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHH---HTTCEEEE
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhh---hhhhhhhh
Confidence 4445899999999999999999999999986 77887 799999999999999876 69999999
Q ss_pred ccHHHHhccCCCCCCHHHHHHHHH
Q 001371 474 GSIKDNIAYGKDDATTEEIRVATE 497 (1091)
Q Consensus 474 ~TIreNI~~g~~~~~~~~i~~a~~ 497 (1091)
+++.+| .||.+ .+.+.++++
T Consensus 89 ~~~~~n-~YGt~---~~~v~~~l~ 108 (197)
T 3ney_A 89 GSYQGN-MFGTK---FETVHQIHK 108 (197)
T ss_dssp EEETTE-EEEEE---HHHHHHHHH
T ss_pred hhhhce-ecccc---hhhHHHHHh
Confidence 999999 58865 445555544
No 160
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.87 E-value=9.5e-10 Score=121.73 Aligned_cols=98 Identities=15% Similarity=0.329 Sum_probs=71.2
Q ss_pred eeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhceeEEeccCccccccHHHHhccCC
Q 001371 405 FSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGK 484 (1091)
Q Consensus 405 isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~ 484 (1091)
++++.++|+.++|+||+||||||++..|.+.+.+..|+|.+.+.|.... ...
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~---------------------~a~------- 148 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRA---------------------AAI------- 148 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCH---------------------HHH-------
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccH---------------------HHH-------
Confidence 3455678999999999999999999999999999888888876553210 011
Q ss_pred CCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHH---HHHHHhhcCCCEEEeeCCCC
Q 001371 485 DDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRI---AIARAILKDPRILLLDEATS 551 (1091)
Q Consensus 485 ~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRi---alARAll~~~~IliLDE~tS 551 (1091)
+++...++..+ .+. + ...|||+.|++ +|+||+.++|+++|+|+|..
T Consensus 149 -----eqL~~~~~~~g-----------l~~-~----~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 149 -----EQLKIWGERVG-----------ATV-I----SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp -----HHHHHHHHHHT-----------CEE-E----CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred -----HHHHHHHHHcC-----------CcE-E----ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 12222222221 111 1 13589999999 99999999999999999974
No 161
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.87 E-value=2.2e-09 Score=118.64 Aligned_cols=138 Identities=12% Similarity=0.195 Sum_probs=91.8
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhceeEEeccCccccccHHHHhccCCCCCCH
Q 001371 410 SSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATT 489 (1091)
Q Consensus 410 ~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~~~~~ 489 (1091)
++|+.++++||+||||||++..|.+.+.+.+|. ++.++.+|++ ..+..|++
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~------------------~V~lv~~D~~--r~~a~eqL--------- 153 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHK------------------KIAFITTDTY--RIAAVEQL--------- 153 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCC------------------CEEEEECCCS--STTHHHHH---------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC------------------EEEEEecCcc--cchHHHHH---------
Confidence 478999999999999999999999999887781 5778888873 33333332
Q ss_pred HHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc
Q 001371 490 EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM 569 (1091)
Q Consensus 490 ~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~ 569 (1091)
....+..+ +| -... ..++..|.+|+++ +++|++|+| |+++|+..+..+.+..+-..
T Consensus 154 ---~~~~~~~g-------l~----~~~~------~~~~~l~~al~~~--~~~dlvIiD--T~G~~~~~~~~~~el~~~l~ 209 (296)
T 2px0_A 154 ---KTYAELLQ-------AP----LEVC------YTKEEFQQAKELF--SEYDHVFVD--TAGRNFKDPQYIDELKETIP 209 (296)
T ss_dssp ---HHHHTTTT-------CC----CCBC------SSHHHHHHHHHHG--GGSSEEEEE--CCCCCTTSHHHHHHHHHHSC
T ss_pred ---HHHHHhcC-------CC----eEec------CCHHHHHHHHHHh--cCCCEEEEe--CCCCChhhHHHHHHHHHHHh
Confidence 22222111 11 1111 1245567888875 999999999 99999877665554332221
Q ss_pred ---CCCeEEEE--ccCchhhhc-cCeEEEEeCCEEee
Q 001371 570 ---VNRTTVIV--AHRLSTVRN-ADMIAVIHRGKIVE 600 (1091)
Q Consensus 570 ---~~~T~I~I--tHrls~i~~-aD~Iivl~~G~Ive 600 (1091)
.+.+++++ +|....+.. +|++..++.|.|+-
T Consensus 210 ~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 210 FESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp CCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEE
T ss_pred hcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 23445666 898776655 77766667777765
No 162
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.86 E-value=1.4e-10 Score=127.87 Aligned_cols=95 Identities=20% Similarity=0.255 Sum_probs=56.4
Q ss_pred EEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEE---CCccccCCChHHHhhceeEEeccCcccc-----ccHHH
Q 001371 407 ISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI---DGINLKEFQLQWIRKKIGLVSQEPVLFT-----GSIKD 478 (1091)
Q Consensus 407 l~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~i---dg~~i~~~~~~~lr~~ia~V~Q~~~Lf~-----~TIre 478 (1091)
+++.+|++++|+||||+|||||+++|+|...|..|+|.+ +|.++.... ...+..++|++|.|-++. -|+ |
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~~~l~~lt~-e 245 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSSLEFTDIEE-E 245 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccccccccCCH-H
Confidence 567799999999999999999999999999999999999 888776532 222223899999997654 578 9
Q ss_pred Hhc--cC---------------CCCCCHHHHHHHHHHcccHH
Q 001371 479 NIA--YG---------------KDDATTEEIRVATELANAAK 503 (1091)
Q Consensus 479 NI~--~g---------------~~~~~~~~i~~a~~~a~l~~ 503 (1091)
||. |. ........+.++++..++.+
T Consensus 246 ~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~ 287 (307)
T 1t9h_A 246 ELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQ 287 (307)
T ss_dssp HHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCH
T ss_pred HHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChH
Confidence 983 32 01112345777777777754
No 163
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.84 E-value=8.1e-10 Score=128.74 Aligned_cols=80 Identities=15% Similarity=0.125 Sum_probs=63.7
Q ss_pred EEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChH--------
Q 001371 385 ELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ-------- 456 (1091)
Q Consensus 385 ~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~-------- 456 (1091)
.+.++++.. ..+|+|+||+|++ ++++|+||||||||||+++|+|+++|++|+|.++|.++...+.+
T Consensus 8 ~l~~l~~~~-----~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~r~~~~~~ 81 (483)
T 3euj_A 8 KFRSLTLIN-----WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGSTSSSRDKGLYG 81 (483)
T ss_dssp EEEEEEEEE-----ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSCCCCSSCCSCGG
T ss_pred ceeEEEEec-----cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccCchhHHhHHHHH
Confidence 355555432 2479999999999 99999999999999999999999999999999999998765533
Q ss_pred HHhhceeEEeccCc
Q 001371 457 WIRKKIGLVSQEPV 470 (1091)
Q Consensus 457 ~lr~~ia~V~Q~~~ 470 (1091)
.++..+.|+.+++.
T Consensus 82 ~~~~~~~~~~~~~~ 95 (483)
T 3euj_A 82 KLKAGVCYAVLETV 95 (483)
T ss_dssp GSCSSEEEEEEEEE
T ss_pred hcCCCceEEEEehh
Confidence 12334567766653
No 164
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.83 E-value=2.4e-11 Score=133.98 Aligned_cols=136 Identities=20% Similarity=0.252 Sum_probs=97.9
Q ss_pred EEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhceeE
Q 001371 385 ELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGL 464 (1091)
Q Consensus 385 ~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia~ 464 (1091)
+++++...|. ...+++++++++++| ++|+||+|||||||+++|.+... .|.|.++|.++.+......++++++
T Consensus 51 ~l~~l~~~~~---~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~ 123 (278)
T 1iy2_A 51 ELKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 123 (278)
T ss_dssp HHHHHHHHHH---CHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHH
T ss_pred HHHHHHHHHH---CHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHH
Confidence 3456666663 236899999999999 99999999999999999999986 8999999988876666666778889
Q ss_pred EeccCc-cc-cccHHHHh-ccCCCCC-----CHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHH
Q 001371 465 VSQEPV-LF-TGSIKDNI-AYGKDDA-----TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1091)
Q Consensus 465 V~Q~~~-Lf-~~TIreNI-~~g~~~~-----~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARA 536 (1091)
++|++. .+ .-++.||| .++.... ..++..+.+ ...+ ..|||||+||..+|+|
T Consensus 124 ~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~-----~~ll---------------~~lsgg~~~~~~i~~a 183 (278)
T 1iy2_A 124 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL-----NQLL---------------VEMDGFEKDTAIVVMA 183 (278)
T ss_dssp HHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHH-----HHHH---------------HHHTTCCTTCCEEEEE
T ss_pred HHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHH-----HHHH---------------HHHhCCCCCCCEEEEE
Confidence 999864 33 34677888 3332111 011222211 1122 1378999999999999
Q ss_pred hhcCCCEEEeeCC
Q 001371 537 ILKDPRILLLDEA 549 (1091)
Q Consensus 537 ll~~~~IliLDE~ 549 (1091)
+..+|++ ||++
T Consensus 184 ~t~~p~~--ld~~ 194 (278)
T 1iy2_A 184 ATNRPDI--LDPA 194 (278)
T ss_dssp EESCTTS--SCHH
T ss_pred ecCCchh--CCHh
Confidence 9999986 5654
No 165
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.82 E-value=4.2e-09 Score=116.39 Aligned_cols=132 Identities=16% Similarity=0.129 Sum_probs=91.2
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhcee
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia 463 (1091)
+.++++++.|+.. . ++++|+ +|+.++++|++|+||||++..|.+.+.+..|+|.+.+.|...-...+
T Consensus 77 ~~~~~l~~~~~~~---~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~------ 143 (295)
T 1ls1_A 77 TVYEALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAARE------ 143 (295)
T ss_dssp HHHHHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHH------
T ss_pred HHHHHHHHHHCCC---C--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHH------
Confidence 4567777888521 1 688888 99999999999999999999999999999999999887664321110
Q ss_pred EEeccCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCCE
Q 001371 464 LVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRI 543 (1091)
Q Consensus 464 ~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~I 543 (1091)
++....+..++ .-+|.| ..-.-.+-||.+|+++..+++|+
T Consensus 144 ---------------------------ql~~~~~~~~l----~~~~~~---------~~~~p~~l~~~~l~~~~~~~~D~ 183 (295)
T 1ls1_A 144 ---------------------------QLRLLGEKVGV----PVLEVM---------DGESPESIRRRVEEKARLEARDL 183 (295)
T ss_dssp ---------------------------HHHHHHHHHTC----CEEECC---------TTCCHHHHHHHHHHHHHHHTCCE
T ss_pred ---------------------------HHHHhcccCCe----EEEEcC---------CCCCHHHHHHHHHHHHHhCCCCE
Confidence 00001111111 111111 11233456799999998899999
Q ss_pred EEeeCC-CCCCCHHhHHHHHHHHHHH
Q 001371 544 LLLDEA-TSALDAESEKVVQEALDRI 568 (1091)
Q Consensus 544 liLDE~-tSaLD~~te~~i~~~l~~~ 568 (1091)
+|+|+| ++++|...-..+.+..+..
T Consensus 184 viiDtpp~~~~d~~~~~~l~~~~~~~ 209 (295)
T 1ls1_A 184 ILVDTAGRLQIDEPLMGELARLKEVL 209 (295)
T ss_dssp EEEECCCCSSCCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCccccHHHHHHHHHHhhhc
Confidence 999999 9999987666666655543
No 166
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.79 E-value=2.6e-11 Score=138.30 Aligned_cols=169 Identities=17% Similarity=0.183 Sum_probs=109.0
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhc------------cCCCCCcEEEECCccccCCCh-HHHhhce---eEEeccCcc
Q 001371 408 SISSGTTAALVGQSGSGKSTVISLIER------------FYDPQAGEVLIDGINLKEFQL-QWIRKKI---GLVSQEPVL 471 (1091)
Q Consensus 408 ~i~~G~~vaIVG~sGsGKSTLl~ll~g------------~~~~~~G~I~idg~~i~~~~~-~~lr~~i---a~V~Q~~~L 471 (1091)
++++|.+++|||++|+|||||++.|.| ..+|+.|.+.++|..+..+.. ..-++.+ .++.+.|-+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 567899999999999999999999999 568999999999854322110 0001122 366677776
Q ss_pred ccc-cHHHHhccCCCCCCHHHHHHHHHHcccH-HHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCC--CEEEee
Q 001371 472 FTG-SIKDNIAYGKDDATTEEIRVATELANAA-KFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP--RILLLD 547 (1091)
Q Consensus 472 f~~-TIreNI~~g~~~~~~~~i~~a~~~a~l~-~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~--~IliLD 547 (1091)
..+ |..|++ .. +....++.+..- ..+.... +. ....+||+. || +|+++|
T Consensus 96 ~~~~s~~e~L-------~~-~fl~~ir~~d~il~Vvd~~~---d~----~i~~v~~~~------------dP~~di~ild 148 (392)
T 1ni3_A 96 TKGASTGVGL-------GN-AFLSHVRAVDAIYQVVRAFD---DA----EIIHVEGDV------------DPIRDLSIIV 148 (392)
T ss_dssp CCCCCSSSSS-------CH-HHHHHHTTCSEEEEEEECCC---TT----CSSCCSSSS------------CHHHHHHHHH
T ss_pred ccCCcHHHHH-------HH-HHHHHHHHHHHHHHHHhccc---cc----eeeeecccc------------Ccchhhhhch
Confidence 543 333322 11 122222322210 0011110 12 223356552 89 999999
Q ss_pred CCCCCCCHHhHHHHHHHHHHH-cC-CCeEEEEccCchhhhc-cCeEE-EEeCC-EEeeecChh
Q 001371 548 EATSALDAESEKVVQEALDRI-MV-NRTTVIVAHRLSTVRN-ADMIA-VIHRG-KIVEKGTHS 605 (1091)
Q Consensus 548 E~tSaLD~~te~~i~~~l~~~-~~-~~T~I~ItHrls~i~~-aD~Ii-vl~~G-~Ive~Gt~~ 605 (1091)
||++.+|+..-+...+.+... .+ ++|+ ++|.+..+.. ||+|. +|++| +++..|+.+
T Consensus 149 eel~~~D~~~~~k~~~~l~~~~~~~g~ti--~sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~~ 209 (392)
T 1ni3_A 149 DELLIKDAEFVEKHLEGLRKITSRGANTL--EMKAKKEEQAIIEKVYQYLTETKQPIRKGDWS 209 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCSSCSS--SHHHHHHHHHHHHHHHHHHHTTCSCGGGSCCC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcCCcc--ccccHHHHHHHHHHHHHHhccCCceeecCCCC
Confidence 999999999877777777765 43 4553 3999887654 99999 99999 888766653
No 167
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.79 E-value=2.4e-11 Score=132.02 Aligned_cols=139 Identities=19% Similarity=0.226 Sum_probs=99.6
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhcee
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia 463 (1091)
.+++++...|. ...+++++++++++| ++|+||+|||||||+++|.+... .|.|.++|.++.+......+++++
T Consensus 26 ~~l~~l~~~~~---~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~ 98 (254)
T 1ixz_A 26 EELKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVR 98 (254)
T ss_dssp HHHHHHHHHHH---CHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHH
T ss_pred HHHHHHHHHHH---CHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHH
Confidence 34566666663 236899999999999 99999999999999999999986 799999998887666666677888
Q ss_pred EEeccCc-cc-cccHHHHh-ccCCCCC-----CHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHH
Q 001371 464 LVSQEPV-LF-TGSIKDNI-AYGKDDA-----TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1091)
Q Consensus 464 ~V~Q~~~-Lf-~~TIreNI-~~g~~~~-----~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialAR 535 (1091)
+++|++. .+ .-++.||| .++.... ..++..+.+ ...+. .|||||+||..+|+
T Consensus 99 ~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~-----~~ll~---------------~l~g~~~~~~~i~~ 158 (254)
T 1ixz_A 99 DLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL-----NQLLV---------------EMDGFEKDTAIVVM 158 (254)
T ss_dssp HHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHH-----HHHHH---------------HHHTCCTTCCEEEE
T ss_pred HHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHH-----HHHHH---------------HHhCCCCCCCEEEE
Confidence 8998864 33 34677777 3432111 111112111 11221 37799999999999
Q ss_pred HhhcCCCEEEeeCCCC
Q 001371 536 AILKDPRILLLDEATS 551 (1091)
Q Consensus 536 All~~~~IliLDE~tS 551 (1091)
|+..+|++ ||++.-
T Consensus 159 a~t~~p~~--ld~~l~ 172 (254)
T 1ixz_A 159 AATNRPDI--LDPALL 172 (254)
T ss_dssp EEESCGGG--SCGGGG
T ss_pred EccCCchh--CCHHHc
Confidence 99999986 677653
No 168
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.73 E-value=1.1e-10 Score=128.47 Aligned_cols=85 Identities=12% Similarity=0.087 Sum_probs=61.6
Q ss_pred HHHhcccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCCcccccceeEEEeeeeeeCCCCCCCccccccceeeeCCCEEEE
Q 001371 997 SQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKVSAK 1076 (1091)
Q Consensus 997 ~~~~~~~~~~~~~~~aa~~i~~~i~~~~~~~~~~~~~~~~~~~~G~I~f~nVs~~Y~~rp~~~VLk~is~~I~~Ge~val 1076 (1091)
.........+..+..++.++.++++.+++..... . ..++..|.|+|+||+|+|+ .+||+|+||+|++||++||
T Consensus 59 ~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~--~-~~~~~~~~i~~~~vs~~y~----~~vL~~vsl~i~~Ge~vaI 131 (305)
T 2v9p_A 59 KDCATMVRHYLRAETQALSMPAYIKARCKLATGE--G-SWKSILTFFNYQNIELITF----INALKLWLKGIPKKNCLAF 131 (305)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCCSS--C-CTHHHHHHHHHTTCCHHHH----HHHHHHHHHTCTTCSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccCCC--C-cccccCCeEEEEEEEEEcC----hhhhccceEEecCCCEEEE
Confidence 3334445566677778888888776543221111 1 1112356799999999995 3599999999999999999
Q ss_pred EcCCCCCccccc
Q 001371 1077 LNFQFHSLKQLT 1088 (1091)
Q Consensus 1077 VG~SG~~~~~~~ 1088 (1091)
|||||||||||.
T Consensus 132 vGpsGsGKSTLl 143 (305)
T 2v9p_A 132 IGPPNTGKSMLC 143 (305)
T ss_dssp ECSSSSSHHHHH
T ss_pred ECCCCCcHHHHH
Confidence 999999999984
No 169
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.70 E-value=1.1e-08 Score=110.06 Aligned_cols=170 Identities=14% Similarity=0.119 Sum_probs=89.7
Q ss_pred ccccce-eEEeeCCCEEEEEcCCCCcHHHHHH-HHhccCCCCCcEEEECCccccCCChHHHhhceeEEeccCccccccHH
Q 001371 400 QIFSGF-SISISSGTTAALVGQSGSGKSTVIS-LIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIK 477 (1091)
Q Consensus 400 ~vL~~i-sl~i~~G~~vaIVG~sGsGKSTLl~-ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIr 477 (1091)
+.|+++ .--+++|+.++|+||+|||||||+. ++....+...+.+.+++..- .-.......++++.+|+... .
T Consensus 10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~-~~~~~~~~~~~g~~~~~~~~-----~ 83 (247)
T 2dr3_A 10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEH-PVQVRQNMAQFGWDVKPYEE-----K 83 (247)
T ss_dssp TTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSC-HHHHHHHHHTTTCCCHHHHH-----H
T ss_pred hhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCC-HHHHHHHHHHcCCCHHHHhh-----C
Confidence 456665 5679999999999999999999965 44555444445555554321 11111222345555554311 0
Q ss_pred HHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhh--cCCCEEEeeCCCCCC--
Q 001371 478 DNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL--KDPRILLLDEATSAL-- 553 (1091)
Q Consensus 478 eNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll--~~~~IliLDE~tSaL-- 553 (1091)
+|+.+-.. .. +. +..+++ .+..+-+. +....+.+..++.++ .+|+++++|++++-+
T Consensus 84 ~~l~~~~~-~~-~~-------------~~~~~~-~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~~ 143 (247)
T 2dr3_A 84 GMFAMVDA-FT-AG-------------IGKSKE-YEKYIVHD----LTDIREFIEVLRQAIRDINAKRVVVDSVTTLYIN 143 (247)
T ss_dssp TSEEEEEC-ST-TT-------------TCC--C-CCSCBCSC----CSSHHHHHHHHHHHHHHHTCCEEEEETSGGGTTT
T ss_pred CcEEEEec-ch-hh-------------cccccc-cccccccC----ccCHHHHHHHHHHHHHHhCCCEEEECCchHhhcC
Confidence 12211100 00 00 000000 00000011 122334444445444 479999999999887
Q ss_pred CHHhHHHHHHHHHHHc--CCCeEEEEccCchh---------hhccCeEEEEeC
Q 001371 554 DAESEKVVQEALDRIM--VNRTTVIVAHRLST---------VRNADMIAVIHR 595 (1091)
Q Consensus 554 D~~te~~i~~~l~~~~--~~~T~I~ItHrls~---------i~~aD~Iivl~~ 595 (1091)
|+.....+...+.+.. .+.|+|+++|.... ...||.|+.|+.
T Consensus 144 ~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 144 KPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp CGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 5433333333343332 47899999998754 355899999964
No 170
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.69 E-value=4.8e-11 Score=135.03 Aligned_cols=155 Identities=15% Similarity=0.180 Sum_probs=98.4
Q ss_pred EEeEEEECCCCCCCccccceeEEeeCC-------CEEEEEcCCCCcHHHHHHHHhccC----CCCCcEEEECCccccCCC
Q 001371 386 LRDVYFSYPARPNEQIFSGFSISISSG-------TTAALVGQSGSGKSTVISLIERFY----DPQAGEVLIDGINLKEFQ 454 (1091)
Q Consensus 386 ~~~vsf~Y~~~~~~~vL~~isl~i~~G-------~~vaIVG~sGsGKSTLl~ll~g~~----~~~~G~I~idg~~i~~~~ 454 (1091)
.++++..|. ...+++++++.+++| +.++|+||+|+|||||+++|.+++ .+.+|.+..++.++..+.
T Consensus 21 ~~~l~~~~g---~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~ 97 (334)
T 1in4_A 21 PKSLDEFIG---QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAIL 97 (334)
T ss_dssp CSSGGGCCS---CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHH
T ss_pred CccHHHccC---cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHH
Confidence 344455554 236899999999877 899999999999999999999998 677888877776665432
Q ss_pred hHHHhhceeEEeccCccccccHHHHhccCCCCC--C----HHHHHHHHHHcccHHHHhhCCC-CcccccccCCCCCChHH
Q 001371 455 LQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDA--T----TEEIRVATELANAAKFIDKLPQ-GIDTLVGEHGTQLSGGQ 527 (1091)
Q Consensus 455 ~~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~~~--~----~~~i~~a~~~a~l~~~i~~lp~-G~~T~vge~G~~LSGGQ 527 (1091)
....+..|.+++|...++. ++.|++.....+. + ..+-. +. +.. .+|. ++.. ...+-..||+|+
T Consensus 98 ~~~~~~~v~~iDE~~~l~~-~~~e~L~~~~~~~~~~i~~~~~~~~---~~--i~~---~l~~~~li~-at~~~~~Ls~~l 167 (334)
T 1in4_A 98 TSLERGDVLFIDEIHRLNK-AVEELLYSAIEDFQIDIMIGKGPSA---KS--IRI---DIQPFTLVG-ATTRSGLLSSPL 167 (334)
T ss_dssp HHCCTTCEEEEETGGGCCH-HHHHHHHHHHHTSCCCC-----------------------CCCEEEE-EESCGGGSCHHH
T ss_pred HHccCCCEEEEcchhhcCH-HHHHHHHHHHHhcccceeeccCccc---cc--ccc---cCCCeEEEE-ecCCcccCCHHH
Confidence 1112457999999887765 7888774211000 0 00000 00 001 1111 1110 112334799999
Q ss_pred HHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc
Q 001371 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM 569 (1091)
Q Consensus 528 kQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~ 569 (1091)
|||++++ ..||+.+...+.+.|++..
T Consensus 168 ~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~ 193 (334)
T 1in4_A 168 RSRFGII----------------LELDFYTVKELKEIIKRAA 193 (334)
T ss_dssp HTTCSEE----------------EECCCCCHHHHHHHHHHHH
T ss_pred HHhcCce----------------eeCCCCCHHHHHHHHHHHH
Confidence 9998665 6788877777777776643
No 171
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=98.69 E-value=7.4e-09 Score=118.10 Aligned_cols=51 Identities=14% Similarity=0.220 Sum_probs=44.6
Q ss_pred cccceeEEEeeeeeeCCCCCCCccccccceeeeCCCEEEEEcCCCCCccccc
Q 001371 1037 EDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKVSAKLNFQFHSLKQLT 1088 (1091)
Q Consensus 1037 ~~~~G~I~f~nVs~~Y~~rp~~~VLk~is~~I~~Ge~valVG~SG~~~~~~~ 1088 (1091)
|+..|.|+++||+++|+.. +.++|+||||+|++||.+||+||||||||||-
T Consensus 14 ~~~~~~i~~~~l~~~y~~~-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLL 64 (390)
T 3gd7_A 14 WPSGGQMTVKDLTAKYTEG-GNAILENISFSISPGQRVGLLGRTGSGKSTLL 64 (390)
T ss_dssp SSSSCCEEEEEEEEESSSS-SCCSEEEEEEEECTTCEEEEEESTTSSHHHHH
T ss_pred CCCCCeEEEEEEEEEecCC-CeEEeeceeEEEcCCCEEEEECCCCChHHHHH
Confidence 4457899999999999643 34699999999999999999999999999973
No 172
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.68 E-value=9.8e-09 Score=126.25 Aligned_cols=132 Identities=20% Similarity=0.229 Sum_probs=96.4
Q ss_pred eEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCC--CCcEEEECCccccCCChHHHhhceeEEeccCccccccHHHHhc--
Q 001371 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDP--QAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIA-- 481 (1091)
Q Consensus 406 sl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~--~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIreNI~-- 481 (1091)
++++++|.+++|+|++|+|||||++.|++...+ ..|+| .+|.++.+....+.++.+++.+|.+.++..+++.||.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDT 81 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDA 81 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEEC
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeC
Confidence 456789999999999999999999999987765 77988 8899999999999999999999999999999988885
Q ss_pred cCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHH
Q 001371 482 YGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVV 561 (1091)
Q Consensus 482 ~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i 561 (1091)
.|..++. .++..+++. .+.-++++| |+.++|+.+++.+
T Consensus 82 pG~~~f~-~~~~~~l~~----------------------------------------ad~~ilVvD-~~~g~~~qt~~~~ 119 (665)
T 2dy1_A 82 PGYGDFV-GEIRGALEA----------------------------------------ADAALVAVS-AEAGVQVGTERAW 119 (665)
T ss_dssp CCSGGGH-HHHHHHHHH----------------------------------------CSEEEEEEE-TTTCSCHHHHHHH
T ss_pred CCccchH-HHHHHHHhh----------------------------------------cCcEEEEEc-CCcccchhHHHHH
Confidence 3433221 223333332 244566666 7777777777555
Q ss_pred HHHHHHHcCCCeEEEEccCchh
Q 001371 562 QEALDRIMVNRTTVIVAHRLST 583 (1091)
Q Consensus 562 ~~~l~~~~~~~T~I~ItHrls~ 583 (1091)
..+.. .+.++|++.|++..
T Consensus 120 ~~~~~---~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 120 TVAER---LGLPRMVVVTKLDK 138 (665)
T ss_dssp HHHHH---TTCCEEEEEECGGG
T ss_pred HHHHH---ccCCEEEEecCCch
Confidence 44432 35667777777654
No 173
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=98.68 E-value=9.9e-09 Score=111.89 Aligned_cols=50 Identities=32% Similarity=0.573 Sum_probs=43.5
Q ss_pred cceeEEEeeeeeeCCCCCCCccccccceeeeCCCEEEEEcCCCCCccccc
Q 001371 1039 VKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKVSAKLNFQFHSLKQLT 1088 (1091)
Q Consensus 1039 ~~G~I~f~nVs~~Y~~rp~~~VLk~is~~I~~Ge~valVG~SG~~~~~~~ 1088 (1091)
..+.|+++||+++|+.++..+||+||||+|++||.+||+||||||||||-
T Consensus 13 ~~~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl 62 (271)
T 2ixe_A 13 MKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVA 62 (271)
T ss_dssp CCCCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHH
T ss_pred CCceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHH
Confidence 35789999999999642234699999999999999999999999999974
No 174
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.68 E-value=4.1e-09 Score=108.96 Aligned_cols=141 Identities=21% Similarity=0.194 Sum_probs=78.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCC-----------CCcEEEECCccccC--CChHHHhhceeEEeccCcccc--ccHHH
Q 001371 414 TAALVGQSGSGKSTVISLIERFYDP-----------QAGEVLIDGINLKE--FQLQWIRKKIGLVSQEPVLFT--GSIKD 478 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g~~~~-----------~~G~I~idg~~i~~--~~~~~lr~~ia~V~Q~~~Lf~--~TIre 478 (1091)
+++|+|++|||||||++.+.|...+ ..|+|.++|.++.- ++....++..++++|...-.+ -++.|
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 7899999999999999999998765 57899999976532 222222233344443211000 01222
Q ss_pred HhccCCCCCCHHHHHHHHHHcccHHHHhh-CCCCc-ccccccCCCCCChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHH
Q 001371 479 NIAYGKDDATTEEIRVATELANAAKFIDK-LPQGI-DTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 556 (1091)
Q Consensus 479 NI~~g~~~~~~~~i~~a~~~a~l~~~i~~-lp~G~-~T~vge~G~~LSGGQkQRialARAll~~~~IliLDE~tSaLD~~ 556 (1091)
+... .+.+.+...++ .+.. -+.+. --.++.+ ..|..-..++..+||++.++|+++++| |||+|..
T Consensus 111 ~~~~----~s~~~~~~~~~------~~~~~~~~~~~i~~v~nK-~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~ 177 (191)
T 1oix_A 111 IAKH----LTYENVERWLK------ELRDHADSNIVIMLVGNK-SDLRHLRAVPTDEARAFAEKNGLSFIE--TSALDST 177 (191)
T ss_dssp TTCH----HHHHTHHHHHH------HHHHHSCTTCEEEEEEEC-GGGGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCT
T ss_pred CcCH----HHHHHHHHHHH------HHHHhcCCCCcEEEEEEC-cccccccccCHHHHHHHHHHcCCEEEE--EeCCCCC
Confidence 1110 00111111111 1111 01110 0122322 122222234578999999999999999 9999999
Q ss_pred hHHHHHHHHHH
Q 001371 557 SEKVVQEALDR 567 (1091)
Q Consensus 557 te~~i~~~l~~ 567 (1091)
....+.+.|.+
T Consensus 178 ~v~~l~~~l~~ 188 (191)
T 1oix_A 178 NVEAAFQTILT 188 (191)
T ss_dssp THHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 88877777654
No 175
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.67 E-value=4.7e-09 Score=107.44 Aligned_cols=80 Identities=24% Similarity=0.244 Sum_probs=63.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccCCC-CCcEEE----------ECCccccCCChHHHhhceeEEeccCccccccHHHH
Q 001371 411 SGTTAALVGQSGSGKSTVISLIERFYDP-QAGEVL----------IDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDN 479 (1091)
Q Consensus 411 ~G~~vaIVG~sGsGKSTLl~ll~g~~~~-~~G~I~----------idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIreN 479 (1091)
+|++++|+||||||||||+++|++++++ ..|.|. ++|.++..++.+.+++. +.|+.+++.+++.+|
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~---~~~~~~l~~~~~~~n 80 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQD---ISNNEYLEYGSHEDA 80 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHH---HHTTCEEEEEEETTE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHH---HHcCCceEEEEEcCc
Confidence 7999999999999999999999999863 344443 47888888888888774 578999999999999
Q ss_pred hccCCCCCCHHHHHHHHH
Q 001371 480 IAYGKDDATTEEIRVATE 497 (1091)
Q Consensus 480 I~~g~~~~~~~~i~~a~~ 497 (1091)
.+|.+ .+.++++++
T Consensus 81 -~yg~~---~~~i~~~l~ 94 (180)
T 1kgd_A 81 -MYGTK---LETIRKIHE 94 (180)
T ss_dssp -EEEEE---HHHHHHHHH
T ss_pred -ccccc---HHHHHHHHH
Confidence 56754 445555543
No 176
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=98.65 E-value=1e-08 Score=111.15 Aligned_cols=49 Identities=20% Similarity=0.388 Sum_probs=43.2
Q ss_pred ceeEEEeeeeeeCCCCCCCccccccceeeeCCCEEEEEcCCCCCccccc
Q 001371 1040 KGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKVSAKLNFQFHSLKQLT 1088 (1091)
Q Consensus 1040 ~G~I~f~nVs~~Y~~rp~~~VLk~is~~I~~Ge~valVG~SG~~~~~~~ 1088 (1091)
.+.|+++||+++|+.+...+||+|+||+|++||.+|||||||||||||-
T Consensus 15 ~~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl 63 (260)
T 2ghi_A 15 GVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIA 63 (260)
T ss_dssp CCCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHH
T ss_pred CCeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHH
Confidence 4679999999999754334699999999999999999999999999984
No 177
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.64 E-value=1.8e-09 Score=131.83 Aligned_cols=157 Identities=15% Similarity=0.174 Sum_probs=103.3
Q ss_pred CccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCC-cEEEECCccccCCChHHHhhceeEEeccC--------
Q 001371 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA-GEVLIDGINLKEFQLQWIRKKIGLVSQEP-------- 469 (1091)
Q Consensus 399 ~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~-G~I~idg~~i~~~~~~~lr~~ia~V~Q~~-------- 469 (1091)
..+++++++.+++|+.+.|+||+|+|||||+++|.+++++.. |.+.+++.+..... ..++++||..
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~-----p~i~~~p~g~~~~~~e~~ 121 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENM-----PRIKTVPACQGRRIVEKY 121 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTS-----CEEEEEETTHHHHHHHHH
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccC-----CcEEEEecchHHHHHHHH
Confidence 468999999999999999999999999999999999999988 88888887765443 3588887754
Q ss_pred --------------cccc-ccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHH
Q 001371 470 --------------VLFT-GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1091)
Q Consensus 470 --------------~Lf~-~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialA 534 (1091)
|.|. .++.+|+..++.......+... ......+.+..+. ++. .....+|+|++|++..+
T Consensus 122 ~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~-~~~~~~~L~G~~~--~~~---~~~g~~~~g~~~~i~~g 195 (604)
T 3k1j_A 122 REKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDA-TGAHAGALLGDVR--HDP---FQSGGLGTPAHERVEPG 195 (604)
T ss_dssp HHHHHHHTCC-----------CCCEEEECCTTCSSCCEEEC-TTCCHHHHHCEEC--CCC---C----CCCCGGGGEECC
T ss_pred HHhhccchhhhhhcccccccccccceeeccccCCCCCEEEc-CCCCHHhcCceEE--ech---hhcCCccccccccccCc
Confidence 3332 3555565543321100000000 0111112222111 011 12234999999999999
Q ss_pred HHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHH
Q 001371 535 RAILKDPRILLLDEATSALDAESEKVVQEALDR 567 (1091)
Q Consensus 535 RAll~~~~IliLDE~tSaLD~~te~~i~~~l~~ 567 (1091)
+....++.+|+|||.-. |++.....+.+.|.+
T Consensus 196 ~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 196 MIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp HHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred eeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 99999999999999988 788777776666654
No 178
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.61 E-value=2.3e-09 Score=125.85 Aligned_cols=160 Identities=18% Similarity=0.218 Sum_probs=94.9
Q ss_pred ceeEEeeCCCEEEEEcCCCCcHHHHHHHHhc--cCCCCCcEEEECCccccCCChHHHhhceeEEeccCccccccH-----
Q 001371 404 GFSISISSGTTAALVGQSGSGKSTVISLIER--FYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSI----- 476 (1091)
Q Consensus 404 ~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g--~~~~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TI----- 476 (1091)
-+++++.++..+.|+|+|||||||+++.|.. .+.+..|++.+.+.|.+...+..+.. -|+++. +|
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~~-------lPhl~~-~Vvtd~~ 230 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEG-------IPHLLT-EVVTDMK 230 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGTT-------CTTBSS-SCBCSHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhcc-------CCcccc-eeecCHH
Confidence 4788899999999999999999999999876 66777788888777777655444432 122221 11
Q ss_pred --HHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHH----------HHHHHhhcCCC-E
Q 001371 477 --KDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRI----------AIARAILKDPR-I 543 (1091)
Q Consensus 477 --reNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRi----------alARAll~~~~-I 543 (1091)
.+++..-..+ -+++ .+.++..++.+.- +|+..+. ..+||||+||. ++||++-..|. +
T Consensus 231 ~a~~~L~~~~~E-merR-~~ll~~~Gv~~i~-----~yn~~~~---~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~iv 300 (512)
T 2ius_A 231 DAANALRWCVNE-MERR-YKLMSALGVRNLA-----GYNEKIA---EADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIV 300 (512)
T ss_dssp HHHHHHHHHHHH-HHHH-HHHHHHTTCSSHH-----HHHHHHH---HHHHTTCCCBCTTC---------CCBCCCCCEEE
T ss_pred HHHHHHHHHHHH-HHHH-HHHHHHcCCccHH-----HHHHHHH---HHhhcCCcccccccccccchhccccccccCCcEE
Confidence 1111100000 0011 1222222221110 1111111 23688888753 46788888898 7
Q ss_pred EEeeCCCCCCCHHhHHHHHHHHHHH---c--CCCeEEEEccCch
Q 001371 544 LLLDEATSALDAESEKVVQEALDRI---M--VNRTTVIVAHRLS 582 (1091)
Q Consensus 544 liLDE~tSaLD~~te~~i~~~l~~~---~--~~~T~I~ItHrls 582 (1091)
+++||+++.+|... +.+.+.|.++ . .|-++|++|||++
T Consensus 301 lvIDE~~~ll~~~~-~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 301 VLVDEFADLMMTVG-KKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EEEETHHHHHHHHH-HHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EEEeCHHHHHhhhh-HHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 88999999988432 3344444432 1 2669999999998
No 179
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.60 E-value=1.1e-07 Score=107.46 Aligned_cols=143 Identities=19% Similarity=0.321 Sum_probs=82.9
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcE-EEECCccccCCChHHHhhceeEEeccCccccccHHHHhccCCCC
Q 001371 408 SISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE-VLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD 486 (1091)
Q Consensus 408 ~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~-I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~~ 486 (1091)
-+++|+.+.|.||+|||||||+..++.......|. ++++... ..+. ...+++++.+|+ +.+..+
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~--~~~~-~~a~~lG~~~~~-----------l~i~~~- 121 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH--ALDP-EYAKKLGVDTDS-----------LLVSQP- 121 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCH-HHHHHTTCCGGG-----------CEEECC-
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC--CcCH-HHHHHcCCCHHH-----------eEEecC-
Confidence 57899999999999999999988877665444443 3333321 0110 111122222111 111111
Q ss_pred CCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcC--CCEEEeeCCCCCC----------C
Q 001371 487 ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD--PRILLLDEATSAL----------D 554 (1091)
Q Consensus 487 ~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~--~~IliLDE~tSaL----------D 554 (1091)
.++ .|-+.++|++.++ |+++|+|++++-+ |
T Consensus 122 ------------------------------------~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd 163 (349)
T 2zr9_A 122 ------------------------------------DTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGD 163 (349)
T ss_dssp ------------------------------------SSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC---
T ss_pred ------------------------------------CCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhcccccc
Confidence 011 2345578888765 9999999999998 3
Q ss_pred H---HhHHHHHHHHHHH-----cCCCeEEEEccCch----------------hhh-ccCeEEEEeCCEEeeecC
Q 001371 555 A---ESEKVVQEALDRI-----MVNRTTVIVAHRLS----------------TVR-NADMIAVIHRGKIVEKGT 603 (1091)
Q Consensus 555 ~---~te~~i~~~l~~~-----~~~~T~I~ItHrls----------------~i~-~aD~Iivl~~G~Ive~Gt 603 (1091)
+ ...+.+.+.++++ ..+.|+|+++|-.. .++ .||.++.+..+++...|+
T Consensus 164 ~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 164 SHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred chhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 3 1222344444433 13789999999543 133 488888887777654443
No 180
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.58 E-value=1.4e-09 Score=114.72 Aligned_cols=75 Identities=12% Similarity=0.132 Sum_probs=51.3
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCCh-------
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL------- 455 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~------- 455 (1091)
.|+++|++..|. . ++++++ ++++|+||||||||||+++|.|++.|++|+|.++|.++...+.
T Consensus 9 ~l~l~~~~~~~~----~------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 77 (227)
T 1qhl_A 9 SLTLINWNGFFA----R------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGL 77 (227)
T ss_dssp EEEEEEETTEEE----E------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------C
T ss_pred EEEEEeeecccC----C------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccch
Confidence 478888765442 1 466666 8999999999999999999999999999999999998844332
Q ss_pred -HHHhhceeEEecc
Q 001371 456 -QWIRKKIGLVSQE 468 (1091)
Q Consensus 456 -~~lr~~ia~V~Q~ 468 (1091)
...+.+++||+|+
T Consensus 78 ~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 78 HGKLKAGVCYSMLD 91 (227)
T ss_dssp GGGBCSSEEEEEEE
T ss_pred hhHhhcCcEEEEEe
Confidence 2246789999984
No 181
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.58 E-value=9.1e-10 Score=125.17 Aligned_cols=134 Identities=16% Similarity=0.241 Sum_probs=89.9
Q ss_pred ccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhceeEEeccCccccccHHHH
Q 001371 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDN 479 (1091)
Q Consensus 400 ~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIreN 479 (1091)
.+|+++++.+++|+.++|+||+|||||||+++|.|.+ +|.+..-+ . +.+.++..+++++|...+| .|+
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~~~--~---~~~~~~~~lg~~~q~~~~l----~dd 224 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALNVN--L---PLDRLNFELGVAIDQFLVV----FED 224 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEECCS--S---CTTTHHHHHGGGTTCSCEE----ETT
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEEEe--c---cchhHHHHHHHhcchhHHH----HHH
Confidence 5899999999999999999999999999999999975 67776511 1 1122344588999987653 445
Q ss_pred hccCCC---CCCH-HHHHHHHHHcccHHHHhh-----------------CCCCcccccccCCCCCChHHHHHHHHHHHhh
Q 001371 480 IAYGKD---DATT-EEIRVATELANAAKFIDK-----------------LPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1091)
Q Consensus 480 I~~g~~---~~~~-~~i~~a~~~a~l~~~i~~-----------------lp~G~~T~vge~G~~LSGGQkQRialARAll 538 (1091)
+.+..+ .... +.+. ....+.+.+.. ++.| .+..+-..+++|.+||++.+.+++
T Consensus 225 ~~~~~~~~r~l~~~~~~~---~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg---~ld~~~~~l~~~~~~rl~~~~~l~ 298 (377)
T 1svm_A 225 VKGTGGESRDLPSGQGIN---NLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPG---IVTMNEYSVPKTLQARFVKQIDFR 298 (377)
T ss_dssp CCCSTTTTTTCCCCSHHH---HHHTTHHHHHCSSCEEECCSSSCCEEECCCCE---EEEECSCCCCHHHHTTEEEEEECC
T ss_pred HHHHHHHHhhccccCcch---HHHHHHHHhcCCCeEeeccCchhhHHHhhcCc---ccChhHHhhcHHHHHHHhhhhccC
Confidence 554322 0100 1110 11123333320 1111 233455678999999999999999
Q ss_pred cCCCEEE-eeCCCC
Q 001371 539 KDPRILL-LDEATS 551 (1091)
Q Consensus 539 ~~~~Ili-LDE~tS 551 (1091)
.+|++++ ||+|+.
T Consensus 299 ~~pDLliyLd~~~~ 312 (377)
T 1svm_A 299 PKDYLKHCLERSEF 312 (377)
T ss_dssp CCHHHHHHHHTCTH
T ss_pred CCCCeEEEEeCCHH
Confidence 9999998 999987
No 182
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.55 E-value=1.1e-08 Score=107.12 Aligned_cols=104 Identities=15% Similarity=0.177 Sum_probs=64.9
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhceeEEeccCccccccHHHHhccCCCCC
Q 001371 408 SISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDA 487 (1091)
Q Consensus 408 ~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~~~ 487 (1091)
++++|++++|+|++||||||++++|.+.++ .+.+++||+.++++ +|+.++.+..
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~---~~~~~~~~~~ 70 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE---SEIETDKNGF 70 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG---GGSCBCTTSC
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH---hHhhccccCC
Confidence 577899999999999999999999999875 38899999999986 7776654433
Q ss_pred CHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCCEEEeeCCCC
Q 001371 488 TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS 551 (1091)
Q Consensus 488 ~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~IliLDE~tS 551 (1091)
.+.++..+++...+.+++..+.++... -.++.|.++ ..+++++|+|=|..
T Consensus 71 ~~~~~~~~~~~~~l~~~i~~~l~~~~~------~~~~~~~~~--------~~~~~~vi~eg~~~ 120 (207)
T 2qt1_A 71 LQYDVLEALNMEKMMSAISCWMESARH------SVVSTDQES--------AEEIPILIIEGFLL 120 (207)
T ss_dssp BCCSSGGGBCHHHHHHHHHHHHHHHTT------SSCCC-------------CCCCEEEEECTTC
T ss_pred ChhHHHHHhHHHHHHHHHHHHHhCCCC------CCcCCCeee--------cCCCCEEEEeehHH
Confidence 222222233333344444332211100 134555544 45678888887653
No 183
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.55 E-value=1.2e-08 Score=107.09 Aligned_cols=80 Identities=21% Similarity=0.195 Sum_probs=60.8
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccCCC-CCcEEE----------ECCccccCCChHHHhhceeEEeccCccccccHHH
Q 001371 410 SSGTTAALVGQSGSGKSTVISLIERFYDP-QAGEVL----------IDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKD 478 (1091)
Q Consensus 410 ~~G~~vaIVG~sGsGKSTLl~ll~g~~~~-~~G~I~----------idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIre 478 (1091)
++|++++|+||||||||||++.|++.+++ ..+.+. .+|.+...++...+++.+ .|+.+++.+++.+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~---~~~~~le~~~~~~ 82 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAI---KDGKMLEYAEYVG 82 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHH---hcCcEEEEEEEcc
Confidence 58999999999999999999999999976 333332 457777777777777765 6788888888888
Q ss_pred HhccCCCCCCHHHHHHHH
Q 001371 479 NIAYGKDDATTEEIRVAT 496 (1091)
Q Consensus 479 NI~~g~~~~~~~~i~~a~ 496 (1091)
| .||.+ .+.+.+++
T Consensus 83 ~-~yg~~---~~~i~~~l 96 (208)
T 3tau_A 83 N-YYGTP---LEYVEEKL 96 (208)
T ss_dssp E-EEEEE---HHHHHHHH
T ss_pred c-cCCCc---HHHHHHHH
Confidence 8 56754 34444443
No 184
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=98.54 E-value=2.2e-08 Score=112.48 Aligned_cols=50 Identities=16% Similarity=0.250 Sum_probs=42.3
Q ss_pred cceeEEEeeeeeeCCCCC-CCccccccceeeeCCCEEEEEcCCCCCccccc
Q 001371 1039 VKGEIELHHVSFKYPSRP-DVQVFRDLNLKIRAGKVSAKLNFQFHSLKQLT 1088 (1091)
Q Consensus 1039 ~~G~I~f~nVs~~Y~~rp-~~~VLk~is~~I~~Ge~valVG~SG~~~~~~~ 1088 (1091)
.+..|+++||+++|+.+. ..+||+||||+|++||.+||+||||||||||-
T Consensus 21 ~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLl 71 (366)
T 3tui_C 21 DKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLI 71 (366)
T ss_dssp --CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHH
T ss_pred CCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHH
Confidence 355799999999996432 23599999999999999999999999999983
No 185
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.53 E-value=9.7e-08 Score=112.45 Aligned_cols=173 Identities=13% Similarity=0.198 Sum_probs=109.4
Q ss_pred ccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCc-EEEECCccccCCChHHHhhce-----eEEeccCcccc
Q 001371 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG-EVLIDGINLKEFQLQWIRKKI-----GLVSQEPVLFT 473 (1091)
Q Consensus 400 ~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G-~I~idg~~i~~~~~~~lr~~i-----a~V~Q~~~Lf~ 473 (1091)
+.|+++..-+++|+++.|.|++|+|||||+.-+++...+..| .|.+-+. +.+...++.++ ++-+|
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~---E~s~~~l~~r~~~~~~~~~~~------ 261 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL---EMSAQQLVMRMLCAEGNINAQ------ 261 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES---SSCHHHHHHHHHHHHHTCCHH------
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC---CCCHHHHHHHHHHHHcCCCHH------
Confidence 468888878999999999999999999999999988776555 5655443 23444444432 22111
Q ss_pred ccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhh--cCCCEEEeeCCCC
Q 001371 474 GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL--KDPRILLLDEATS 551 (1091)
Q Consensus 474 ~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll--~~~~IliLDE~tS 551 (1091)
++.-| ..++++..++.+.. +.+...| -.+-+ ...+|++|.+ +.||++. .+|+++++|+++.
T Consensus 262 -----~l~~g--~l~~~~~~~~~~a~---~~l~~~~----l~i~d-~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~ 324 (454)
T 2r6a_A 262 -----NLRTG--KLTPEDWGKLTMAM---GSLSNAG----IYIDD-TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQL 324 (454)
T ss_dssp -----HHHTS--CCCHHHHHHHHHHH---HHHHSSC----EEEEC-CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGG
T ss_pred -----HHhcC--CCCHHHHHHHHHHH---HHHhcCC----EEEEC-CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHH
Confidence 22223 24555544443332 2233322 11222 2468999876 6677776 5799999999999
Q ss_pred CCCHH-----hH---HHHHHHHHHHc--CCCeEEEEcc-----------Cch--------hh-hccCeEEEEeCCEE
Q 001371 552 ALDAE-----SE---KVVQEALDRIM--VNRTTVIVAH-----------RLS--------TV-RNADMIAVIHRGKI 598 (1091)
Q Consensus 552 aLD~~-----te---~~i~~~l~~~~--~~~T~I~ItH-----------rls--------~i-~~aD~Iivl~~G~I 598 (1091)
-.+.. .. ..+.+.|+.+. .+.|+|+++| |+. .+ ..||.|++|..++.
T Consensus 325 ~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 325 IQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp SCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred hccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 87532 11 34444555443 3789999999 132 23 35999999986654
No 186
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.49 E-value=3.4e-08 Score=106.60 Aligned_cols=46 Identities=7% Similarity=0.173 Sum_probs=41.3
Q ss_pred ceeEEEeeeeeeCCCCCCCccccccceeeeCCCEEEEEcCCCCCccccc
Q 001371 1040 KGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKVSAKLNFQFHSLKQLT 1088 (1091)
Q Consensus 1040 ~G~I~f~nVs~~Y~~rp~~~VLk~is~~I~~Ge~valVG~SG~~~~~~~ 1088 (1091)
-+.|+++||+++|.. .+||+||||+|++||.+||+||||||||||-
T Consensus 13 ~~~l~i~~l~~~y~~---~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLl 58 (256)
T 1vpl_A 13 MGAVVVKDLRKRIGK---KEILKGISFEIEEGEIFGLIGPNGAGKTTTL 58 (256)
T ss_dssp -CCEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHH
T ss_pred CCeEEEEEEEEEECC---EEEEEeeEEEEcCCcEEEEECCCCCCHHHHH
Confidence 478999999999953 3599999999999999999999999999974
No 187
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=98.48 E-value=3.8e-08 Score=107.57 Aligned_cols=46 Identities=11% Similarity=0.104 Sum_probs=41.3
Q ss_pred ceeEEEeeeeeeCCCCCCCccccccceeeeCCCEEEEEcCCCCCccccc
Q 001371 1040 KGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKVSAKLNFQFHSLKQLT 1088 (1091)
Q Consensus 1040 ~G~I~f~nVs~~Y~~rp~~~VLk~is~~I~~Ge~valVG~SG~~~~~~~ 1088 (1091)
+-.|+++||+++|.. .+||+||||+|++||.+||+||||||||||-
T Consensus 19 ~~~l~~~~l~~~y~~---~~vL~~isl~i~~Ge~~~liG~NGsGKSTLl 64 (279)
T 2ihy_A 19 HMLIQLDQIGRMKQG---KTILKKISWQIAKGDKWILYGLNGAGKTTLL 64 (279)
T ss_dssp CEEEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSSHHHHH
T ss_pred CceEEEEeEEEEECC---EEEEEeeeEEEcCCCEEEEECCCCCcHHHHH
Confidence 446999999999953 3599999999999999999999999999973
No 188
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=98.48 E-value=3.7e-08 Score=106.64 Aligned_cols=44 Identities=20% Similarity=0.375 Sum_probs=40.3
Q ss_pred eEEEeeeeeeCCCCCCCccccccceeeeCCCEEEEEcCCCCCccccc
Q 001371 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKVSAKLNFQFHSLKQLT 1088 (1091)
Q Consensus 1042 ~I~f~nVs~~Y~~rp~~~VLk~is~~I~~Ge~valVG~SG~~~~~~~ 1088 (1091)
.|+++||+++|.. .+||+||||+|++||.+||+||||||||||-
T Consensus 24 ~l~i~~l~~~y~~---~~vL~~vsl~i~~Gei~~liG~NGsGKSTLl 67 (263)
T 2olj_A 24 MIDVHQLKKSFGS---LEVLKGINVHIREGEVVVVIGPSGSGKSTFL 67 (263)
T ss_dssp SEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHH
T ss_pred eEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHH
Confidence 5999999999953 3599999999999999999999999999984
No 189
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=98.44 E-value=4.9e-08 Score=106.21 Aligned_cols=46 Identities=15% Similarity=0.259 Sum_probs=40.3
Q ss_pred ceeEEEeeeeeeCCCCCCCccccccceeeeCCCEEEEEcCCCCCccccc
Q 001371 1040 KGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKVSAKLNFQFHSLKQLT 1088 (1091)
Q Consensus 1040 ~G~I~f~nVs~~Y~~rp~~~VLk~is~~I~~Ge~valVG~SG~~~~~~~ 1088 (1091)
...|+++||+++|.. .+||+||||+|++||.+||+||||||||||-
T Consensus 18 ~~~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLl 63 (267)
T 2zu0_C 18 SHMLSIKDLHVSVED---KAILRGLSLDVHPGEVHAIMGPNGSGKSTLS 63 (267)
T ss_dssp --CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHH
T ss_pred CceEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCCCHHHHH
Confidence 346999999999953 3599999999999999999999999999974
No 190
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.41 E-value=4.1e-08 Score=100.42 Aligned_cols=99 Identities=18% Similarity=0.120 Sum_probs=62.2
Q ss_pred cceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCc--cccCCChH----HHhhceeEEeccCc------
Q 001371 403 SGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGI--NLKEFQLQ----WIRKKIGLVSQEPV------ 470 (1091)
Q Consensus 403 ~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~--~i~~~~~~----~lr~~ia~V~Q~~~------ 470 (1091)
+++++++.+| +++|+||+|||||||+.+|.+.+.+..|...-.+. ++-..... ..+..|.++.|+|.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~ 96 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNEDRGFPID 96 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTTCCSSSS
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCCcccccC
Confidence 6889999999 99999999999999999999988887765433221 11111100 23457999999862
Q ss_pred ----cccccHHHH----hccCCCCCCHHHHHHHHHHcccH
Q 001371 471 ----LFTGSIKDN----IAYGKDDATTEEIRVATELANAA 502 (1091)
Q Consensus 471 ----Lf~~TIreN----I~~g~~~~~~~~i~~a~~~a~l~ 502 (1091)
.+..++..+ +.......+.+++.+.++..++.
T Consensus 97 ~~~~~i~r~~~~~~~~~~~i~g~~~~~~~~~~~l~~~~l~ 136 (182)
T 3kta_A 97 EDEVVIRRRVYPDGRSSYWLNGRRATRSEILDILTAAMIS 136 (182)
T ss_dssp SSEEEEEEEECTTSCEEEEETTEEECHHHHHHHHHHTTCC
T ss_pred CcEEEEEEEEEeCCcEEEEECCeEcCHHHHHHHHHHcCCC
Confidence 222222111 11111224667777777776654
No 191
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.38 E-value=1.4e-07 Score=97.86 Aligned_cols=136 Identities=22% Similarity=0.264 Sum_probs=72.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC-----CCC------CcEEEECCcccc----CCC-hHHHhhceeEEeccCc--c--cc
Q 001371 414 TAALVGQSGSGKSTVISLIERFY-----DPQ------AGEVLIDGINLK----EFQ-LQWIRKKIGLVSQEPV--L--FT 473 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g~~-----~~~------~G~I~idg~~i~----~~~-~~~lr~~ia~V~Q~~~--L--f~ 473 (1091)
+++|+|++|||||||++.+.|.. .|+ .|.|.++|.++. +.+ .+.+|+......|++. + |+
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 86 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYD 86 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEE
Confidence 68999999999999999999974 243 578999997652 222 2223322222223221 1 21
Q ss_pred ccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhh-CCCCcc-cccccCCCCCChHHHHHHHHHHHhhcCCCEEEeeCCCC
Q 001371 474 GSIKDNIAYGKDDATTEEIRVATELANAAKFIDK-LPQGID-TLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS 551 (1091)
Q Consensus 474 ~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~-lp~G~~-T~vge~G~~LSGGQkQRialARAll~~~~IliLDE~tS 551 (1091)
.+-+. +.+++...++ .+.. .+.+.- -.++.+ ..|..-.......||++.++|++.++| ||
T Consensus 87 ~~~~~---------s~~~~~~~~~------~~~~~~~~~~~i~~v~nK-~Dl~~~~~~~~~~a~~l~~~~~~~~~d--~S 148 (199)
T 2f9l_A 87 IAKHL---------TYENVERWLK------ELRDHADSNIVIMLVGNK-SDLRHLRAVPTDEARAFAEKNNLSFIE--TS 148 (199)
T ss_dssp TTCHH---------HHHTHHHHHH------HHHHHSCTTCEEEEEEEC-TTCGGGCCSCHHHHHHHHHHTTCEEEE--CC
T ss_pred CcCHH---------HHHHHHHHHH------HHHHhcCCCCeEEEEEEC-cccccccCcCHHHHHHHHHHcCCeEEE--Ee
Confidence 11110 0111111111 1111 011110 122322 112111112346699999999999999 99
Q ss_pred CCCHHhHHHHHHHHHH
Q 001371 552 ALDAESEKVVQEALDR 567 (1091)
Q Consensus 552 aLD~~te~~i~~~l~~ 567 (1091)
|+|...-..+.+.|.+
T Consensus 149 al~~~~i~~l~~~l~~ 164 (199)
T 2f9l_A 149 ALDSTNVEEAFKNILT 164 (199)
T ss_dssp TTTCTTHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHH
Confidence 9999977777666654
No 192
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=98.36 E-value=1.7e-07 Score=105.38 Aligned_cols=47 Identities=21% Similarity=0.280 Sum_probs=41.3
Q ss_pred ceeEEEeeeeeeCCCCCCCccccccceeeeCCCEEEEEcCCCCCccccc
Q 001371 1040 KGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKVSAKLNFQFHSLKQLT 1088 (1091)
Q Consensus 1040 ~G~I~f~nVs~~Y~~rp~~~VLk~is~~I~~Ge~valVG~SG~~~~~~~ 1088 (1091)
...|+++||+++|+. +.+||+|+||+|++||.+||+||||||||||-
T Consensus 12 ~~~l~~~~l~~~y~g--~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLL 58 (355)
T 1z47_A 12 SMTIEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTIL 58 (355)
T ss_dssp CEEEEEEEEEECCTT--STTCEEEEEEEEETTCEEEEECSTTSSHHHHH
T ss_pred CceEEEEEEEEEEcC--CCEEEeeeEEEECCCCEEEEECCCCCcHHHHH
Confidence 357999999999942 23599999999999999999999999999973
No 193
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.36 E-value=6.8e-07 Score=104.63 Aligned_cols=114 Identities=21% Similarity=0.289 Sum_probs=75.3
Q ss_pred ccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhceeEEeccCccccccHHHH
Q 001371 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDN 479 (1091)
Q Consensus 400 ~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIreN 479 (1091)
..++++++++++| +.|+||+|+|||||++++.+.... .+-++ +..+.
T Consensus 39 ~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~----------------------~f~~i---------s~~~~ 85 (476)
T 2ce7_A 39 SKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANV----------------------PFFHI---------SGSDF 85 (476)
T ss_dssp HHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTC----------------------CEEEE---------EGGGT
T ss_pred HHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCC----------------------CeeeC---------CHHHH
Confidence 4677888888888 889999999999999999985421 01111 11111
Q ss_pred hccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCCEEEeeCCCC--------
Q 001371 480 IAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS-------- 551 (1091)
Q Consensus 480 I~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~IliLDE~tS-------- 551 (1091)
+. . .+| .|++++|-.+++|....|.|+++||+.+
T Consensus 86 ~~-------------------------~-------~~g------~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~ 127 (476)
T 2ce7_A 86 VE-------------------------L-------FVG------VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAG 127 (476)
T ss_dssp TT-------------------------C-------CTT------HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC----
T ss_pred HH-------------------------H-------Hhc------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccc
Confidence 00 0 011 2788999999999999999999999944
Q ss_pred --CCCHHhHHHHHHHHHHH-----cCCCeEEEEccCchhh
Q 001371 552 --ALDAESEKVVQEALDRI-----MVNRTTVIVAHRLSTV 584 (1091)
Q Consensus 552 --aLD~~te~~i~~~l~~~-----~~~~T~I~ItHrls~i 584 (1091)
+.|.+.++.+.+.+..+ ..+..+|..||+.+.+
T Consensus 128 ~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 128 LGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp -----CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred cCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence 55665555555544332 1345778889998655
No 194
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.34 E-value=1.1e-07 Score=99.24 Aligned_cols=83 Identities=17% Similarity=0.161 Sum_probs=50.5
Q ss_pred EEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhceeEEeccC-----------cccccc
Q 001371 407 ISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEP-----------VLFTGS 475 (1091)
Q Consensus 407 l~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~-----------~Lf~~T 475 (1091)
++|++|++++|+||+||||||++++|.+.+.|+.| +.+ +....+.. ...+..++|++|++ .+++.+
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~-~~i-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK-YSI-SMTTRQMR-EGEVDGVDYFFKTRDAFEALIKDDQFIEYAE 77 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE-CCC-CEECSCCC-TTCCBTTTBEECCHHHHHHHHHTTCEEEEEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE-Eec-ccccCCCC-CCccCCCceEEcCHHHHHHHHHcCCeEEEEe
Confidence 47899999999999999999999999999977655 212 11111111 11123477777765 445556
Q ss_pred HHHHhccCCCCCCHHHHHHHH
Q 001371 476 IKDNIAYGKDDATTEEIRVAT 496 (1091)
Q Consensus 476 IreNI~~g~~~~~~~~i~~a~ 496 (1091)
+++| .+|.+ .+++.+++
T Consensus 78 ~~~~-~~g~~---~~~i~~~l 94 (207)
T 2j41_A 78 YVGN-YYGTP---VQYVKDTM 94 (207)
T ss_dssp ETTE-EEEEE---HHHHHHHH
T ss_pred ECCe-ecCCC---HHHHHHHH
Confidence 6666 34532 44555544
No 195
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.33 E-value=5e-08 Score=116.37 Aligned_cols=89 Identities=26% Similarity=0.299 Sum_probs=63.9
Q ss_pred EEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCc-EEE-ECCccccC-------CCh---HHHhhceeEEeccCccccc
Q 001371 407 ISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG-EVL-IDGINLKE-------FQL---QWIRKKIGLVSQEPVLFTG 474 (1091)
Q Consensus 407 l~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G-~I~-idg~~i~~-------~~~---~~lr~~ia~V~Q~~~Lf~~ 474 (1091)
..+++|+.++|+|+||||||||+++|.+.+.|.+| +|. +||.++.+ ++. ..+++++++|+|+.
T Consensus 364 ~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~l----- 438 (552)
T 3cr8_A 364 PRERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASEI----- 438 (552)
T ss_dssp CGGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHHH-----
T ss_pred cccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHH-----
Confidence 36789999999999999999999999999999987 784 99987643 122 23456789999872
Q ss_pred cHHHHhccCCCC----CCHHHHHHHHHHcc
Q 001371 475 SIKDNIAYGKDD----ATTEEIRVATELAN 500 (1091)
Q Consensus 475 TIreNI~~g~~~----~~~~~i~~a~~~a~ 500 (1091)
+..+|+.+.... ...+++.++++..+
T Consensus 439 ~~~~~ivi~~~~~~~~~~r~~~r~lL~~~g 468 (552)
T 3cr8_A 439 TKNRGIAICAPIAPYRQTRRDVRAMIEAVG 468 (552)
T ss_dssp HHTTCEEEECCCCCCHHHHHHHHHHHHTTS
T ss_pred HhcCCEEEEecCCccHHHHHHHHHHHHHcC
Confidence 456676554321 12345556666544
No 196
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.32 E-value=3.3e-07 Score=104.65 Aligned_cols=47 Identities=28% Similarity=0.327 Sum_probs=36.6
Q ss_pred CccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhc--cCCCCCcEEEECCc
Q 001371 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIER--FYDPQAGEVLIDGI 448 (1091)
Q Consensus 399 ~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g--~~~~~~G~I~idg~ 448 (1091)
..+|+++++++| .++|||++|||||||++.|.| ++++.+|.+.....
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~ 72 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPL 72 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCE
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcce
Confidence 358999999998 999999999999999999999 77888887754443
No 197
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.31 E-value=2.4e-07 Score=105.22 Aligned_cols=142 Identities=12% Similarity=0.216 Sum_probs=84.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCC-----------CCCcEEEECCccccCCChHHHhhceeEEeccCcc----ccccHH-
Q 001371 414 TAALVGQSGSGKSTVISLIERFYD-----------PQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVL----FTGSIK- 477 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g~~~-----------~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~L----f~~TIr- 477 (1091)
.++|||++|+|||||++.|.|... |..|.|.++|.++.- ....|++.|.|.- |..|..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l------~DT~G~i~~lp~~lve~f~~tl~~ 254 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIML------VDTVGFIRGIPPQIVDAFFVTLSE 254 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEE------EECCCBCSSCCGGGHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEE------EeCCCchhcCCHHHHHHHHHHHHH
Confidence 499999999999999999999765 677999999976532 2356776664431 333322
Q ss_pred ----HHhccCCCCCC--HHHHHHHHHHcccHHHHhhC--CCCcccccccCCCCCChHHHHHHHHH----HHh-hcCCCEE
Q 001371 478 ----DNIAYGKDDAT--TEEIRVATELANAAKFIDKL--PQGIDTLVGEHGTQLSGGQKQRIAIA----RAI-LKDPRIL 544 (1091)
Q Consensus 478 ----eNI~~g~~~~~--~~~i~~a~~~a~l~~~i~~l--p~G~~T~vge~G~~LSGGQkQRialA----RAl-l~~~~Il 544 (1091)
|++.+--+ .+ +.+..+..+. ..+.+..+ ++----.|+.+--.+|+|++||+.++ |++ ..+|++
T Consensus 255 ~~~aD~il~VvD-~s~~~~~~~~~~~~--~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~- 330 (364)
T 2qtf_A 255 AKYSDALILVID-STFSENLLIETLQS--SFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV- 330 (364)
T ss_dssp GGGSSEEEEEEE-TTSCHHHHHHHHHH--HHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE-
T ss_pred HHhCCEEEEEEE-CCCCcchHHHHHHH--HHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE-
Confidence 22332211 11 1001111111 11222222 11111234566666898999998887 666 444554
Q ss_pred EeeCCCCCCCHHhHHHHHHHHHHH
Q 001371 545 LLDEATSALDAESEKVVQEALDRI 568 (1091)
Q Consensus 545 iLDE~tSaLD~~te~~i~~~l~~~ 568 (1091)
+|+||+|...-..+.+.|.+.
T Consensus 331 ---~~~SA~~g~gi~~L~~~I~~~ 351 (364)
T 2qtf_A 331 ---IPISALKRTNLELLRDKIYQL 351 (364)
T ss_dssp ---EECBTTTTBSHHHHHHHHHHH
T ss_pred ---EEEECCCCcCHHHHHHHHHHH
Confidence 899999999877777777654
No 198
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.30 E-value=3.4e-08 Score=116.36 Aligned_cols=138 Identities=19% Similarity=0.228 Sum_probs=98.6
Q ss_pred EEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhceeEE
Q 001371 386 LRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLV 465 (1091)
Q Consensus 386 ~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia~V 465 (1091)
++++...|. ++.+++++++++++| +.|+||+|+|||||+++|.++.. .|.+.++|.++.+......++++..+
T Consensus 43 l~~lv~~l~---~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~l 115 (499)
T 2dhr_A 43 LKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDL 115 (499)
T ss_dssp HHHHHHHHH---CGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHHH
T ss_pred HHHHHHHhh---chhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHHH
Confidence 444444443 235899999999999 99999999999999999999985 78999999988776666667778888
Q ss_pred eccCc-ccc-ccHHHHh-ccCCCCC-----CHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHh
Q 001371 466 SQEPV-LFT-GSIKDNI-AYGKDDA-----TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1091)
Q Consensus 466 ~Q~~~-Lf~-~TIreNI-~~g~~~~-----~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAl 537 (1091)
+|++. .+. -.+-|+| .++.... ..++..+.+. ..+. .|||||+|+..+++|.
T Consensus 116 fq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~-----~LL~---------------~Ldg~~~~~~viviAa 175 (499)
T 2dhr_A 116 FETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLN-----QLLV---------------EMDGFEKDTAIVVMAA 175 (499)
T ss_dssp TTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHH-----HHHH---------------HGGGCCSSCCCEEEEC
T ss_pred HHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHH-----HHHH---------------HhcccccCccEEEEEe
Confidence 88864 232 3566777 3432111 1222222221 2222 2678899999999999
Q ss_pred hcCCCEEEeeCCCCC
Q 001371 538 LKDPRILLLDEATSA 552 (1091)
Q Consensus 538 l~~~~IliLDE~tSa 552 (1091)
..+|++ ||||.-.
T Consensus 176 tn~p~~--LD~aLlr 188 (499)
T 2dhr_A 176 TNRPDI--LDPALLR 188 (499)
T ss_dssp CSCGGG--SCTTTSS
T ss_pred cCChhh--cCccccc
Confidence 999987 8998764
No 199
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.25 E-value=9.7e-08 Score=102.46 Aligned_cols=52 Identities=27% Similarity=0.365 Sum_probs=36.2
Q ss_pred cEEEEeE-EEECCCCCCCccccceeEEeeC---CCEEEEEcCCCCcHHHHHHHHhccC
Q 001371 383 DIELRDV-YFSYPARPNEQIFSGFSISISS---GTTAALVGQSGSGKSTVISLIERFY 436 (1091)
Q Consensus 383 ~I~~~~v-sf~Y~~~~~~~vL~~isl~i~~---G~~vaIVG~sGsGKSTLl~ll~g~~ 436 (1091)
.++++|+ +|+|++ +.++|+|+||+|++ |+.++|+|++||||||+.++|.+.+
T Consensus 17 ~l~~~~~~~~~~~~--~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFDE--EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp -----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEecC--cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5899999 999932 45799999999999 9999999999999999999999865
No 200
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.21 E-value=3.6e-07 Score=95.03 Aligned_cols=62 Identities=15% Similarity=0.163 Sum_probs=44.6
Q ss_pred eEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhceeEEeccCccc
Q 001371 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLF 472 (1091)
Q Consensus 406 sl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf 472 (1091)
.++.++|++++|+||+||||||++++|.+.+ |.+.+||.++..-. ...+..+++++|++..+
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~~-~~~~~~~g~~~~~~~~~ 84 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSPE-NIATMQRGIPLTDEDRW 84 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCHH-HHHHHHTTCCCCHHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccHH-HHHHHhcCCCCCCcccc
Confidence 3667899999999999999999999999987 99999998775321 11223578888875433
No 201
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=98.19 E-value=3.6e-07 Score=100.33 Aligned_cols=44 Identities=20% Similarity=0.253 Sum_probs=29.3
Q ss_pred ceeEEEeeeeeeCCCCCCCccccccceeeeCCCEEEEEcCCCCCccccc
Q 001371 1040 KGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKVSAKLNFQFHSLKQLT 1088 (1091)
Q Consensus 1040 ~G~I~f~nVs~~Y~~rp~~~VLk~is~~I~~Ge~valVG~SG~~~~~~~ 1088 (1091)
.+.|+++||+++| + +||+|+||+|++||.+||+||||||||||-
T Consensus 38 ~~~l~~~~l~~~~--~---~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl 81 (290)
T 2bbs_A 38 DDSLSFSNFSLLG--T---PVLKDINFKIERGQLLAVAGSTGAGKTSLL 81 (290)
T ss_dssp ------------C--C---CSEEEEEEEECTTCEEEEEESTTSSHHHHH
T ss_pred CceEEEEEEEEcC--c---eEEEeeEEEEcCCCEEEEECCCCCcHHHHH
Confidence 5689999999965 2 499999999999999999999999999974
No 202
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.19 E-value=7.5e-08 Score=100.20 Aligned_cols=52 Identities=27% Similarity=0.404 Sum_probs=45.6
Q ss_pred CccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEE--EECCcccc
Q 001371 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV--LIDGINLK 451 (1091)
Q Consensus 399 ~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I--~idg~~i~ 451 (1091)
....+..++..++|++++|+|||||||||++++|.+.+. ..|.+ .+||.++.
T Consensus 12 ~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 12 VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR 65 (200)
T ss_dssp CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence 456788889999999999999999999999999999997 78988 88886553
No 203
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.16 E-value=6.4e-07 Score=93.01 Aligned_cols=45 Identities=16% Similarity=0.083 Sum_probs=25.2
Q ss_pred ECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccC
Q 001371 392 SYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFY 436 (1091)
Q Consensus 392 ~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~ 436 (1091)
+|+.++..++++|+||++++|+.++|+|++||||||+.+.|.+.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 5 HHHSSGVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 466556778999999999999999999999999999999999877
No 204
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.11 E-value=7.8e-07 Score=99.11 Aligned_cols=68 Identities=21% Similarity=0.245 Sum_probs=55.2
Q ss_pred cccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCCh----HHH-----hhceeEE-ecc
Q 001371 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL----QWI-----RKKIGLV-SQE 468 (1091)
Q Consensus 401 vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~----~~l-----r~~ia~V-~Q~ 468 (1091)
++++++|++++|+.++|+|++|+||||++..|.+.+.+..|+|.+.+.|+..... ..| +.++.++ +|.
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~ 171 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANK 171 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSS
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCC
Confidence 3467888889999999999999999999999999999999999999888765432 334 5567888 554
No 205
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=98.04 E-value=6.6e-07 Score=99.57 Aligned_cols=56 Identities=14% Similarity=0.206 Sum_probs=50.7
Q ss_pred CCCcEEEEeEEEECCCCCCCcccc--------------ceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCC
Q 001371 380 IRGDIELRDVYFSYPARPNEQIFS--------------GFSISISSGTTAALVGQSGSGKSTVISLIERFYD 437 (1091)
Q Consensus 380 ~~~~I~~~~vsf~Y~~~~~~~vL~--------------~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~ 437 (1091)
..+.|+|+|++|.||. ++.+|+ |+++.|.+|++++|+||+|+|||||++.|.++..
T Consensus 130 ~~~ri~Fe~ltp~yP~--er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 130 ARNKILFENLTPLHAN--SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp HTTSCCTTTSCEESCC--SBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred hcCCceeccccccCCC--CccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 3568999999999985 467898 9999999999999999999999999999999863
No 206
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.03 E-value=8.7e-08 Score=106.31 Aligned_cols=125 Identities=11% Similarity=0.183 Sum_probs=74.5
Q ss_pred CccccceeEEeeCCC------EEEEEcCCCCcHHHHHHHHhccCCC--CCcEEEECCccccCCChHHHhhceeEEeccCc
Q 001371 399 EQIFSGFSISISSGT------TAALVGQSGSGKSTVISLIERFYDP--QAGEVLIDGINLKEFQLQWIRKKIGLVSQEPV 470 (1091)
Q Consensus 399 ~~vL~~isl~i~~G~------~vaIVG~sGsGKSTLl~ll~g~~~~--~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~ 470 (1091)
...|++++..+.+++ ++||+|||||||||++++|.+++.+ .+|. ++++++|.+
T Consensus 73 ~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~-------------------v~~i~~D~f 133 (321)
T 3tqc_A 73 RQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPN-------------------VEVITTDGF 133 (321)
T ss_dssp HHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCC-------------------EEEEEGGGG
T ss_pred hHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCe-------------------EEEEeeccc
Confidence 356778888887776 9999999999999999999999874 4444 555666665
Q ss_pred cccccHHHHh----ccCCCC-CCHHHHHHHHHHcccHHHHhhCCCCcc-cccccCCCCCChHHHHHHHHHHHhhcCCCEE
Q 001371 471 LFTGSIKDNI----AYGKDD-ATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQKQRIAIARAILKDPRIL 544 (1091)
Q Consensus 471 Lf~~TIreNI----~~g~~~-~~~~~i~~a~~~a~l~~~i~~lp~G~~-T~vge~G~~LSGGQkQRialARAll~~~~Il 544 (1091)
..+...++.. .+|.|+ .+.+.+.+ ++..+..|.+ ..+- .+|-+..+|+.-+.....+|+|+
T Consensus 134 ~~~~~~l~~~~~~~~~g~P~~~D~~~l~~---------~L~~L~~g~~~v~~P----~yd~~~~~r~~~~~~~v~~~dIV 200 (321)
T 3tqc_A 134 LYSNAKLEKQGLMKRKGFPESYDMPSLLR---------VLNAIKSGQRNVRIP----VYSHHYYDIVRGQYEIVDQPDIV 200 (321)
T ss_dssp BCCHHHHHHTTCGGGTTSGGGBCHHHHHH---------HHHHHHTTCSSEEEE----EEETTTTEEEEEEEEEECSCSEE
T ss_pred ccchhhhhhHHHHhhccCcccccHHHHHH---------HHHhhhccccccccc----hhhhhccccccCceeeccCCCEE
Confidence 5544333321 134442 23333333 3344444441 1110 12222233433334456789999
Q ss_pred EeeCCCCCCCH
Q 001371 545 LLDEATSALDA 555 (1091)
Q Consensus 545 iLDE~tSaLD~ 555 (1091)
|+|-+..-.|.
T Consensus 201 IvEGi~lL~~~ 211 (321)
T 3tqc_A 201 ILEGLNILQTG 211 (321)
T ss_dssp EEECTTTTCCC
T ss_pred EEEcccccccc
Confidence 99998876553
No 207
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=98.03 E-value=5e-06 Score=93.22 Aligned_cols=29 Identities=24% Similarity=0.358 Sum_probs=26.2
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhccC
Q 001371 408 SISSGTTAALVGQSGSGKSTVISLIERFY 436 (1091)
Q Consensus 408 ~i~~G~~vaIVG~sGsGKSTLl~ll~g~~ 436 (1091)
-+++|+.+.|.||+|||||||+..++...
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 58999999999999999999998887654
No 208
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.00 E-value=1.8e-05 Score=88.97 Aligned_cols=59 Identities=20% Similarity=0.231 Sum_probs=44.4
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEE-EECCccccCCChHHHhhceeEEeccC
Q 001371 408 SISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV-LIDGINLKEFQLQWIRKKIGLVSQEP 469 (1091)
Q Consensus 408 ~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I-~idg~~i~~~~~~~lr~~ia~V~Q~~ 469 (1091)
-+++|+.+.|.||+|||||||+..+++...+..|.+ ++|+.+..+ ..+.+++++.+|+.
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~---~~ra~rlgv~~~~l 116 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALD---PVYAKNLGVDLKSL 116 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC---HHHHHHHTCCGGGC
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccc---hHHHHHcCCchhhh
Confidence 488999999999999999999999999988877765 666654322 12445677766543
No 209
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.99 E-value=4.4e-07 Score=96.57 Aligned_cols=64 Identities=22% Similarity=0.233 Sum_probs=50.1
Q ss_pred eEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCC------ChHH----HhhceeEEeccCcccc
Q 001371 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEF------QLQW----IRKKIGLVSQEPVLFT 473 (1091)
Q Consensus 406 sl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~------~~~~----lr~~ia~V~Q~~~Lf~ 473 (1091)
+.+.++|++++|+|++||||||++++|.+. .|+|.+++.|.... .... .++.+++++|++.++.
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 87 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLT 87 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHHH
Confidence 335579999999999999999999999998 78999999886532 1211 2457889999876654
No 210
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.96 E-value=2.1e-06 Score=89.50 Aligned_cols=69 Identities=17% Similarity=0.175 Sum_probs=43.3
Q ss_pred CChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchh---hhccCeEEEEe
Q 001371 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLST---VRNADMIAVIH 594 (1091)
Q Consensus 523 LSGGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~---i~~aD~Iivl~ 594 (1091)
.+.|+.+|..+++.++.+|+.+-.+ .+.+++...+.+.+.+... .+.++|+-+|-+.. .+.||.+++++
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~-~~~~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ-TAPYTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC-CSSEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc-CCCEEEEEechhhhcCcHhhCCEEEEEE
Confidence 4688999999999999988754433 2345566555555555432 35678887887654 36799999986
No 211
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.94 E-value=1e-05 Score=101.06 Aligned_cols=65 Identities=14% Similarity=0.156 Sum_probs=49.9
Q ss_pred CCCChHHHHHHHHHHHhhcCCCEEEeeCCCC-CCCHHhHHHHHHHHHHHcCC-CeEEE-EccCchhhh
Q 001371 521 TQLSGGQKQRIAIARAILKDPRILLLDEATS-ALDAESEKVVQEALDRIMVN-RTTVI-VAHRLSTVR 585 (1091)
Q Consensus 521 ~~LSGGQkQRialARAll~~~~IliLDE~tS-aLD~~te~~i~~~l~~~~~~-~T~I~-ItHrls~i~ 585 (1091)
.-+|+|+.+|..++++++.+++++|+|||.. .+|......+.+.+....++ +++++ .||....+.
T Consensus 189 ~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~ 256 (773)
T 2xau_A 189 KYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQ 256 (773)
T ss_dssp EEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHH
T ss_pred EEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHH
Confidence 3568999999999999999999999999997 89987655555555555544 55555 478776553
No 212
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.93 E-value=1.1e-05 Score=91.67 Aligned_cols=59 Identities=17% Similarity=0.181 Sum_probs=46.4
Q ss_pred CCCChHHHHHHHHHHHhhcCCCEEEee-CCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccC
Q 001371 521 TQLSGGQKQRIAIARAILKDPRILLLD-EATSALDAESEKVVQEALDRIMVNRTTVIVAHR 580 (1091)
Q Consensus 521 ~~LSGGQkQRialARAll~~~~IliLD-E~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHr 580 (1091)
..+|+|++|++. +.+...++-++++| ++.+++|.+....+.+.+.+...++.+|+|...
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK 289 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINK 289 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECC
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 358999999887 66666777889999 999999998777777777665557888888843
No 213
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.92 E-value=2.5e-05 Score=89.78 Aligned_cols=161 Identities=19% Similarity=0.206 Sum_probs=95.7
Q ss_pred EEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHH-HhhceeE
Q 001371 386 LRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW-IRKKIGL 464 (1091)
Q Consensus 386 ~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~-lr~~ia~ 464 (1091)
.++++..|+.. . ++++|+ +|+.++++|++||||||++..|.+.+.+..|+|.+.+.|.......+ ++.. +
T Consensus 79 ~~~L~~~~~~~---~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~-~- 149 (425)
T 2ffh_A 79 YEALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLL-G- 149 (425)
T ss_dssp HHHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHH-H-
T ss_pred HHHHHHHhCCC---c--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHh-c-
Confidence 44556666421 1 677887 89999999999999999999999999999999999888776543322 2210 0
Q ss_pred EeccCccccccHHHHhcc--CCCCCCHHHHHHHHHHcccHHHHhhC-CCCcccccccCCCCCC---hHHHHHHHHHHHhh
Q 001371 465 VSQEPVLFTGSIKDNIAY--GKDDATTEEIRVATELANAAKFIDKL-PQGIDTLVGEHGTQLS---GGQKQRIAIARAIL 538 (1091)
Q Consensus 465 V~Q~~~Lf~~TIreNI~~--g~~~~~~~~i~~a~~~a~l~~~i~~l-p~G~~T~vge~G~~LS---GGQkQRialARAll 538 (1091)
-+.|+.+ ..+..+..++. .+.++.+ .++||..|=+-.-.++ .-..+...++|++.
T Consensus 150 -----------~~~gv~v~~~~~~~~p~~i~--------~~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~ 210 (425)
T 2ffh_A 150 -----------EKVGVPVLEVMDGESPESIR--------RRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLG 210 (425)
T ss_dssp -----------HHHTCCEEECCTTCCHHHHH--------HHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHC
T ss_pred -----------ccCCccEEecCCCCCHHHHH--------HHHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhccC
Confidence 0112211 01122334431 1223333 2577776655443443 34567778888886
Q ss_pred cCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEcc
Q 001371 539 KDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAH 579 (1091)
Q Consensus 539 ~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItH 579 (1091)
.++-+|++| ++++.|.... + +.+.+. -+-+-|++|+
T Consensus 211 pd~vlLVvD-a~tgq~av~~--a-~~f~~~-l~i~GVIlTK 246 (425)
T 2ffh_A 211 PDEVLLVLD-AMTGQEALSV--A-RAFDEK-VGVTGLVLTK 246 (425)
T ss_dssp CSEEEEEEE-GGGTTHHHHH--H-HHHHHH-TCCCEEEEES
T ss_pred CceEEEEEe-ccchHHHHHH--H-HHHHhc-CCceEEEEeC
Confidence 666677777 5666554421 1 223222 2457777775
No 214
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.83 E-value=3e-07 Score=95.59 Aligned_cols=33 Identities=33% Similarity=0.463 Sum_probs=27.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCcc
Q 001371 412 GTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGIN 449 (1091)
Q Consensus 412 G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~ 449 (1091)
...++|+|++||||||+.+.|.+. |...+|.-+
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-----g~~~id~d~ 40 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-----GYPVLDLDA 40 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-----TCCEEEHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-----CCEEEcccH
Confidence 357999999999999999999985 766776544
No 215
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.82 E-value=4.9e-06 Score=90.01 Aligned_cols=60 Identities=18% Similarity=0.230 Sum_probs=50.5
Q ss_pred HHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhccCeEEEEeC
Q 001371 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHR 595 (1091)
Q Consensus 530 RialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~ 595 (1091)
|++|||||..+|++++||||| |+++...+ ++....++|+++++|..+....||++++|..
T Consensus 88 ~~~la~aL~~~p~illlDEp~---D~~~~~~~---l~~~~~g~~vl~t~H~~~~~~~~dri~~l~~ 147 (261)
T 2eyu_A 88 ADALRAALREDPDVIFVGEMR---DLETVETA---LRAAETGHLVFGTLHTNTAIDTIHRIVDIFP 147 (261)
T ss_dssp HHHHHHHHHHCCSEEEESCCC---SHHHHHHH---HHHHHTTCEEEEEECCSSHHHHHHHHHHTSC
T ss_pred HHHHHHHHhhCCCEEEeCCCC---CHHHHHHH---HHHHccCCEEEEEeCcchHHHHHHHHhhhcC
Confidence 899999999999999999999 98875433 3334468999999999998888999988853
No 216
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.81 E-value=4.6e-06 Score=100.14 Aligned_cols=47 Identities=19% Similarity=0.334 Sum_probs=42.1
Q ss_pred ccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECC
Q 001371 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG 447 (1091)
Q Consensus 400 ~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg 447 (1091)
.+++++++++ +|+.+.|+||+|+|||||+++|.+...+..|.|.++|
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~ 143 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGG 143 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecc
Confidence 4678888888 8999999999999999999999999988888876665
No 217
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.77 E-value=1e-05 Score=90.18 Aligned_cols=104 Identities=13% Similarity=0.219 Sum_probs=70.4
Q ss_pred ccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhceeEEeccCccccccHHHH
Q 001371 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDN 479 (1091)
Q Consensus 400 ~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIreN 479 (1091)
+-|+.+.--+++|+++.|.|++|+|||||+.-++.......+ .+.|++=
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~-------------------~Vl~fSl------------ 82 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDR-------------------GVAVFSL------------ 82 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC-------------------EEEEEES------------
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCC-------------------eEEEEeC------------
Confidence 356666657899999999999999999999887765433211 3444332
Q ss_pred hccCCCCCCHHHHHH-HH---HHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCCEEEeeCCCCCCC
Q 001371 480 IAYGKDDATTEEIRV-AT---ELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD 554 (1091)
Q Consensus 480 I~~g~~~~~~~~i~~-a~---~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~IliLDE~tSaLD 554 (1091)
+.+.+++.. .+ ....+++.. .| .||++++||++.|...+.+++++|.|+|...+|
T Consensus 83 ------Ems~~ql~~Rlls~~~~v~~~~l~-------------~g-~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~ 141 (338)
T 4a1f_A 83 ------EMSAEQLALRALSDLTSINMHDLE-------------SG-RLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE 141 (338)
T ss_dssp ------SSCHHHHHHHHHHHHHCCCHHHHH-------------HT-CCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH
T ss_pred ------CCCHHHHHHHHHHHhhCCCHHHHh-------------cC-CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH
Confidence 234444432 21 112222211 12 699999999999999999999999999876544
No 218
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.69 E-value=2.9e-06 Score=90.89 Aligned_cols=46 Identities=7% Similarity=0.128 Sum_probs=29.0
Q ss_pred eeEEEeee-eeeCCCCCCCccccccceeeeC---CCEEEEEcCCCCCccccc
Q 001371 1041 GEIELHHV-SFKYPSRPDVQVFRDLNLKIRA---GKVSAKLNFQFHSLKQLT 1088 (1091)
Q Consensus 1041 G~I~f~nV-s~~Y~~rp~~~VLk~is~~I~~---Ge~valVG~SG~~~~~~~ 1088 (1091)
..++++|| +++|.. +.++|+|+||+|++ |++++|+|+|||||||+.
T Consensus 16 ~~l~~~~~~~~~~~~--~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~ 65 (250)
T 3nwj_A 16 ALLETGSLLHSPFDE--EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVG 65 (250)
T ss_dssp ------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHH
T ss_pred CceEEcceeeEEecC--cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHH
Confidence 47999999 999921 33699999999999 999999999999999974
No 219
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.68 E-value=1.3e-06 Score=99.46 Aligned_cols=44 Identities=11% Similarity=0.008 Sum_probs=38.4
Q ss_pred EEeeeeee---CCCCCCCccc---------cccceeeeCCCEEEEEcCCCCCccccc
Q 001371 1044 ELHHVSFK---YPSRPDVQVF---------RDLNLKIRAGKVSAKLNFQFHSLKQLT 1088 (1091)
Q Consensus 1044 ~f~nVs~~---Y~~rp~~~VL---------k~is~~I~~Ge~valVG~SG~~~~~~~ 1088 (1091)
+|+||+|+ |++. +.+|| +++||.|++|+.++||||||||||||-
T Consensus 137 ~f~~v~f~~~~Y~~~-~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll 192 (361)
T 2gza_A 137 FFKHVRPMSKSLTPF-EQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLM 192 (361)
T ss_dssp TTSCCCCSCSCCCHH-HHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHH
T ss_pred CcCccccccccccch-hHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHH
Confidence 99999999 9642 22466 999999999999999999999999974
No 220
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.62 E-value=1.7e-06 Score=85.94 Aligned_cols=42 Identities=10% Similarity=-0.145 Sum_probs=35.0
Q ss_pred EEeeeeeeCCCCCCCccccccceeeeCCCEEEEEcCCCCCccccc
Q 001371 1044 ELHHVSFKYPSRPDVQVFRDLNLKIRAGKVSAKLNFQFHSLKQLT 1088 (1091)
Q Consensus 1044 ~f~nVs~~Y~~rp~~~VLk~is~~I~~Ge~valVG~SG~~~~~~~ 1088 (1091)
+-+|++.+|. ...+|+++||+|++||.+||+||+|||||||.
T Consensus 9 ~~~~~~~~~g---~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLl 50 (158)
T 1htw_A 9 PDEFSMLRFG---KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLT 50 (158)
T ss_dssp CSHHHHHHHH---HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHH
T ss_pred CCHHHHHHHH---HHHHHhccccccCCCCEEEEECCCCCCHHHHH
Confidence 3445667774 23599999999999999999999999999985
No 221
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.62 E-value=6.1e-06 Score=91.89 Aligned_cols=49 Identities=12% Similarity=0.070 Sum_probs=44.0
Q ss_pred ccceeEEEeeeeeeCCCCCCCcccc--------------ccceeeeCCCEEEEEcCCCCCccccc
Q 001371 1038 DVKGEIELHHVSFKYPSRPDVQVFR--------------DLNLKIRAGKVSAKLNFQFHSLKQLT 1088 (1091)
Q Consensus 1038 ~~~G~I~f~nVs~~Y~~rp~~~VLk--------------~is~~I~~Ge~valVG~SG~~~~~~~ 1088 (1091)
..+|.|+|+||++.||.+. .+|+ |+++.|.+||+++||||||+|||+|-
T Consensus 129 ~~~~ri~Fe~ltp~yP~er--~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl 191 (422)
T 3ice_A 129 NARNKILFENLTPLHANSR--LRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLL 191 (422)
T ss_dssp HHTTSCCTTTSCEESCCSB--CCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHH
T ss_pred hhcCCceeccccccCCCCc--cccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHH
Confidence 3589999999999998643 4889 89999999999999999999999875
No 222
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.62 E-value=4.7e-05 Score=87.66 Aligned_cols=40 Identities=28% Similarity=0.354 Sum_probs=34.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccc
Q 001371 411 SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINL 450 (1091)
Q Consensus 411 ~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i 450 (1091)
++..++++||+||||||++..|.+.+.+..++|.+-+.|.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV 135 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 5689999999999999999999999988888887755443
No 223
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.61 E-value=1.9e-05 Score=79.87 Aligned_cols=38 Identities=34% Similarity=0.403 Sum_probs=33.8
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCcccc
Q 001371 410 SSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLK 451 (1091)
Q Consensus 410 ~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~ 451 (1091)
++|+.++|+|++||||||+++.|.+.+ |.+.+|+.++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~ 43 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLH 43 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCcccc
Confidence 468999999999999999999999876 88999987664
No 224
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.60 E-value=1.8e-05 Score=82.14 Aligned_cols=47 Identities=17% Similarity=0.146 Sum_probs=40.2
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCC
Q 001371 408 SISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ 454 (1091)
Q Consensus 408 ~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~ 454 (1091)
..++|++++|+|++||||||+++.|.+.+++..|.|.+.+.|....+
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~ 64 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVE 64 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCC
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCC
Confidence 35688999999999999999999999999988999888776655444
No 225
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.58 E-value=1.9e-06 Score=95.74 Aligned_cols=45 Identities=13% Similarity=0.033 Sum_probs=40.0
Q ss_pred cceeEEEeeeeeeCCCCCCCcccccccee-----------------------eeCCCEEEEEcCCCCCccccc
Q 001371 1039 VKGEIELHHVSFKYPSRPDVQVFRDLNLK-----------------------IRAGKVSAKLNFQFHSLKQLT 1088 (1091)
Q Consensus 1039 ~~G~I~f~nVs~~Y~~rp~~~VLk~is~~-----------------------I~~Ge~valVG~SG~~~~~~~ 1088 (1091)
.++.|+++||++.|. |+++++++. +++|+.+||+||||||||||.
T Consensus 40 ~~~~i~~~~v~~~y~-----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~ 107 (312)
T 3aez_A 40 LGEQIDLLEVEEVYL-----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTA 107 (312)
T ss_dssp TTCCCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHH
T ss_pred CCCeEEeeehhhhhh-----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHH
Confidence 478899999999993 488888875 899999999999999999985
No 226
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.54 E-value=0.00022 Score=81.75 Aligned_cols=30 Identities=23% Similarity=0.515 Sum_probs=26.3
Q ss_pred CCC--EEEEEcCCCCcHHHHHHHHhccCCCCC
Q 001371 411 SGT--TAALVGQSGSGKSTVISLIERFYDPQA 440 (1091)
Q Consensus 411 ~G~--~vaIVG~sGsGKSTLl~ll~g~~~~~~ 440 (1091)
++. .+.|+||+|+||||+++.+.+...+..
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~ 72 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYKDKT 72 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc
Confidence 456 899999999999999999999987653
No 227
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.44 E-value=0.0001 Score=83.07 Aligned_cols=28 Identities=18% Similarity=0.171 Sum_probs=25.9
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhcc
Q 001371 408 SISSGTTAALVGQSGSGKSTVISLIERF 435 (1091)
Q Consensus 408 ~i~~G~~vaIVG~sGsGKSTLl~ll~g~ 435 (1091)
-+++|+.+.|.||+|||||||+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999999988875
No 228
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.42 E-value=0.00066 Score=72.23 Aligned_cols=29 Identities=31% Similarity=0.320 Sum_probs=24.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCcE
Q 001371 414 TAALVGQSGSGKSTVISLIERFYDPQAGE 442 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g~~~~~~G~ 442 (1091)
+++|||++|+|||||++.|+|...+.+|.
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~~ 59 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSGT 59 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccCC
Confidence 68999999999999999999977665553
No 229
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.41 E-value=4.8e-06 Score=93.37 Aligned_cols=38 Identities=11% Similarity=-0.093 Sum_probs=34.9
Q ss_pred EeeeeeeCCCCCCCccccccceeeeCCCEEEEEcCCCCCccccc
Q 001371 1045 LHHVSFKYPSRPDVQVFRDLNLKIRAGKVSAKLNFQFHSLKQLT 1088 (1091)
Q Consensus 1045 f~nVs~~Y~~rp~~~VLk~is~~I~~Ge~valVG~SG~~~~~~~ 1088 (1091)
|+||+| | .++|+++||.|++|+.++|+||||||||||-
T Consensus 151 ~~~v~f-y-----~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll 188 (330)
T 2pt7_A 151 YNLLDN-K-----EQAISAIKDGIAIGKNVIVCGGTGSGKTTYI 188 (330)
T ss_dssp TTTSTT-H-----HHHHHHHHHHHHHTCCEEEEESTTSCHHHHH
T ss_pred cCchhh-H-----HHHHhhhhhhccCCCEEEEECCCCCCHHHHH
Confidence 889999 8 2599999999999999999999999999974
No 230
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.37 E-value=2.4e-05 Score=79.38 Aligned_cols=40 Identities=38% Similarity=0.488 Sum_probs=33.3
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccCCCCCc--EEEECCccc
Q 001371 410 SSGTTAALVGQSGSGKSTVISLIERFYDPQAG--EVLIDGINL 450 (1091)
Q Consensus 410 ~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G--~I~idg~~i 450 (1091)
++|++++|+|++||||||+.++|.+.+.+ .| .|.+||..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHH
Confidence 47999999999999999999999998876 66 677776444
No 231
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.37 E-value=6.6e-05 Score=94.31 Aligned_cols=33 Identities=18% Similarity=0.314 Sum_probs=29.5
Q ss_pred eEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCC
Q 001371 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDP 438 (1091)
Q Consensus 406 sl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~ 438 (1091)
+|.+++|+.+.|+||+|||||||+++|.+.+.+
T Consensus 232 ~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 232 AIGVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp SSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred hcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 346899999999999999999999999998743
No 232
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.36 E-value=3.6e-05 Score=86.88 Aligned_cols=43 Identities=16% Similarity=0.273 Sum_probs=38.2
Q ss_pred CccccceeEEeeCCCE--EEEEcCCCCcHHHHHHHHhccCCCCCc
Q 001371 399 EQIFSGFSISISSGTT--AALVGQSGSGKSTVISLIERFYDPQAG 441 (1091)
Q Consensus 399 ~~vL~~isl~i~~G~~--vaIVG~sGsGKSTLl~ll~g~~~~~~G 441 (1091)
..+++.++..++.|+. +.+.||+|+||||+++++.+.+.+..+
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~ 75 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY 75 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc
Confidence 3588999999999998 999999999999999999999876554
No 233
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.35 E-value=0.00073 Score=74.40 Aligned_cols=32 Identities=31% Similarity=0.405 Sum_probs=27.1
Q ss_pred ChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCH
Q 001371 524 SGGQKQRIAIARAILKDPRILLLDEATSALDA 555 (1091)
Q Consensus 524 SGGQkQRialARAll~~~~IliLDE~tSaLD~ 555 (1091)
++++++|-.+++|...+|.++++||+.+-.+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~ 128 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSE 128 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBC
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccc
Confidence 36788888888888889999999999887764
No 234
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.33 E-value=0.00029 Score=82.29 Aligned_cols=44 Identities=16% Similarity=0.294 Sum_probs=33.2
Q ss_pred hc-CCCEEEeeCCCCCCCH-HhHHHHHHHHHHHc-CCCeEEEEccCc
Q 001371 538 LK-DPRILLLDEATSALDA-ESEKVVQEALDRIM-VNRTTVIVAHRL 581 (1091)
Q Consensus 538 l~-~~~IliLDE~tSaLD~-~te~~i~~~l~~~~-~~~T~I~ItHrl 581 (1091)
++ ++++|++||+..-.+. .+...+...+.... .++++|+.||+.
T Consensus 191 ~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 191 YRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp HTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred hcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 45 8999999999887764 46666777776644 467888888884
No 235
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.31 E-value=0.00086 Score=72.14 Aligned_cols=44 Identities=25% Similarity=0.322 Sum_probs=29.2
Q ss_pred cccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCc
Q 001371 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGI 448 (1091)
Q Consensus 401 vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~ 448 (1091)
.++++++..++| +.|+||+|+||||++++|.+.+... -+.+++.
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~ 79 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGS 79 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECSC
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHH
Confidence 345555555555 9999999999999999999987422 3555543
No 236
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.27 E-value=8.3e-06 Score=90.70 Aligned_cols=45 Identities=18% Similarity=0.132 Sum_probs=41.1
Q ss_pred cceeEEEeeeeeeCCCCCCCccccccceee-------------------eCCCEEEEEcCCCCCccccc
Q 001371 1039 VKGEIELHHVSFKYPSRPDVQVFRDLNLKI-------------------RAGKVSAKLNFQFHSLKQLT 1088 (1091)
Q Consensus 1039 ~~G~I~f~nVs~~Y~~rp~~~VLk~is~~I-------------------~~Ge~valVG~SG~~~~~~~ 1088 (1091)
.++.|+++||++.|. +++++|++++ ++|+.+||+||||||||||.
T Consensus 34 ~~~~i~~~~v~~~y~-----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~ 97 (308)
T 1sq5_A 34 INEDLSLEEVAEIYL-----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTA 97 (308)
T ss_dssp HCTTCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHH
T ss_pred CccccchHhHHHHHH-----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHH
Confidence 368899999999992 5999999999 99999999999999999985
No 237
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=97.26 E-value=2.7e-05 Score=90.50 Aligned_cols=45 Identities=11% Similarity=0.084 Sum_probs=40.3
Q ss_pred eeEEEeeeeeeCCCCCCCccccccceeeeCCCEEEEEcCCCCCccccc
Q 001371 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKVSAKLNFQFHSLKQLT 1088 (1091)
Q Consensus 1041 G~I~f~nVs~~Y~~rp~~~VLk~is~~I~~Ge~valVG~SG~~~~~~~ 1088 (1091)
+.++++||++.|.+ +..||+++ |+|++||++||+||||||||+|-
T Consensus 130 ~~l~~~~v~~~~~t--g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl 174 (438)
T 2dpy_A 130 NPLQRTPIEHVLDT--GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLL 174 (438)
T ss_dssp CTTTSCCCCSBCCC--SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHH
T ss_pred CceEEeccceecCC--CceEEeee-EEecCCCEEEEECCCCCCHHHHH
Confidence 56899999999963 34699999 99999999999999999999983
No 238
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.18 E-value=0.00014 Score=83.20 Aligned_cols=31 Identities=16% Similarity=0.315 Sum_probs=27.1
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccCCCCC
Q 001371 410 SSGTTAALVGQSGSGKSTVISLIERFYDPQA 440 (1091)
Q Consensus 410 ~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~ 440 (1091)
+++..+.|.||+|+|||||++.+.+.+.+..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~ 73 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKF 73 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 4678999999999999999999999876543
No 239
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.18 E-value=0.00022 Score=79.30 Aligned_cols=107 Identities=10% Similarity=0.126 Sum_probs=67.6
Q ss_pred ccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhceeEEeccCccccccHHHH
Q 001371 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDN 479 (1091)
Q Consensus 400 ~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIreN 479 (1091)
+.|+++.--+++|+++.|.|++|+|||||+.-++...-. .| ..+.|++=|
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g------------------~~vl~~slE----------- 105 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-ND------------------DVVNLHSLE----------- 105 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-TT------------------CEEEEEESS-----------
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cC------------------CeEEEEECC-----------
Confidence 457777766999999999999999999998777643211 11 124443322
Q ss_pred hccCCCCCCHHHHHHHHHH--cccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCCEEEeeCCCCCC
Q 001371 480 IAYGKDDATTEEIRVATEL--ANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL 553 (1091)
Q Consensus 480 I~~g~~~~~~~~i~~a~~~--a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~IliLDE~tSaL 553 (1091)
.+.+++..=+.. .+.. +..+-.|. ..||++++||++.|...+.++++++.|+|...+
T Consensus 106 -------~s~~~l~~R~~~~~~~i~--~~~l~~~~--------~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~~ 164 (315)
T 3bh0_A 106 -------MGKKENIKRLIVTAGSIN--AQKIKAAR--------RDFASEDWGKLSMAIGEISNSNINIFDKAGQSV 164 (315)
T ss_dssp -------SCHHHHHHHHHHHHTTCC--HHHHHSCH--------HHHCSSCHHHHHHHHHHHHTSCEEEECCSCCBH
T ss_pred -------CCHHHHHHHHHHHHcCCC--HHHHhcCC--------CCCCHHHHHHHHHHHHHHhCCCEEEECCCCCCH
Confidence 334443322111 1111 01111111 128999999999999999999999999986443
No 240
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.18 E-value=0.0001 Score=76.54 Aligned_cols=30 Identities=23% Similarity=0.345 Sum_probs=26.5
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhccCC
Q 001371 408 SISSGTTAALVGQSGSGKSTVISLIERFYD 437 (1091)
Q Consensus 408 ~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~ 437 (1091)
...+|..++|+|||||||||+.+.|...++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 356899999999999999999999998774
No 241
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.15 E-value=0.00021 Score=79.03 Aligned_cols=126 Identities=15% Similarity=0.181 Sum_probs=66.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEE-CCccccCCChHHHhhceeEEeccCcc--ccccHHHHhccCCCCC
Q 001371 411 SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI-DGINLKEFQLQWIRKKIGLVSQEPVL--FTGSIKDNIAYGKDDA 487 (1091)
Q Consensus 411 ~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~i-dg~~i~~~~~~~lr~~ia~V~Q~~~L--f~~TIreNI~~g~~~~ 487 (1091)
++.+++|||++|+|||||++.|+|.- +.+ .+.+-. ..+...+++.|+..- |-+| |..
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~------~~i~s~~~~t-----Tr~~~~gi~~~~~~~i~~iDT---------pG~ 66 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK------ISITSRKAQT-----TRHRIVGIHTEGAYQAIYVDT---------PGL 66 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS------EEECCCCSSC-----CSSCEEEEEEETTEEEEEESS---------SSC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC------ccccCCCCCc-----ceeeEEEEEEECCeeEEEEEC---------cCC
Confidence 34489999999999999999999863 222 111111 113356778776531 2122 222
Q ss_pred CHHHHHHHHHHcccHHHHhhCCC---Cccccc--ccCCCCCChHHHHHHHHHHHhh--cCCCEEEeeCCCCCCCHHh-HH
Q 001371 488 TTEEIRVATELANAAKFIDKLPQ---GIDTLV--GEHGTQLSGGQKQRIAIARAIL--KDPRILLLDEATSALDAES-EK 559 (1091)
Q Consensus 488 ~~~~i~~a~~~a~l~~~i~~lp~---G~~T~v--ge~G~~LSGGQkQRialARAll--~~~~IliLDE~tSaLD~~t-e~ 559 (1091)
.. +....+.. ++...... ..|-.+ -+. ..+|+|++ .+++++- ..|.|+++ +-+|... ..
T Consensus 67 ~~-~~~~~l~~----~~~~~~~~~l~~~D~vl~Vvd~-~~~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~ 133 (301)
T 1ega_A 67 HM-EEKRAINR----LMNKAASSSIGDVELVIFVVEG-TRWTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKA 133 (301)
T ss_dssp CH-HHHHHHHH----HHTCCTTSCCCCEEEEEEEEET-TCCCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHH
T ss_pred Cc-cchhhHHH----HHHHHHHHHHhcCCEEEEEEeC-CCCCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHH
Confidence 21 11111110 11111111 112111 122 23899887 4566665 67888888 6788765 45
Q ss_pred HHHHHHHHHc
Q 001371 560 VVQEALDRIM 569 (1091)
Q Consensus 560 ~i~~~l~~~~ 569 (1091)
.+.+.+.++.
T Consensus 134 ~~~~~l~~l~ 143 (301)
T 1ega_A 134 DLLPHLQFLA 143 (301)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5656665543
No 242
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.15 E-value=0.00018 Score=76.10 Aligned_cols=43 Identities=21% Similarity=0.264 Sum_probs=31.5
Q ss_pred ccceeEEee---CCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEE
Q 001371 402 FSGFSISIS---SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI 445 (1091)
Q Consensus 402 L~~isl~i~---~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~i 445 (1091)
|.++|++++ +|.+++|.|++||||||+++.|...+.+ .+.+..
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~ 58 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIM 58 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCcee
Confidence 445555554 8999999999999999999999999987 666644
No 243
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.14 E-value=5.5e-05 Score=86.66 Aligned_cols=43 Identities=12% Similarity=-0.028 Sum_probs=32.7
Q ss_pred eeEEEeeeeeeCCCCCCCccccccceeeeCCCE--EEEEcCCCCCccccc
Q 001371 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKV--SAKLNFQFHSLKQLT 1088 (1091)
Q Consensus 1041 G~I~f~nVs~~Y~~rp~~~VLk~is~~I~~Ge~--valVG~SG~~~~~~~ 1088 (1091)
..+++++ +++|.+. + |+|+||+|++|+. +|||||||||||||-
T Consensus 15 ~~l~~~~-~~~y~~~---~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLl 59 (427)
T 2qag_B 15 RTVPLAG-HVGFDSL---P-DQLVNKSVSQGFCFNILCVGETGLGKSTLM 59 (427)
T ss_dssp --CCCCC-CC-CC-----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHH
T ss_pred ceEEEee-EEEECCe---e-cCCCceEecCCCeeEEEEECCCCCCHHHHH
Confidence 3566666 7888533 4 9999999999999 999999999999974
No 244
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.14 E-value=0.0001 Score=75.98 Aligned_cols=42 Identities=14% Similarity=0.390 Sum_probs=31.8
Q ss_pred EEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhc
Q 001371 390 YFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIER 434 (1091)
Q Consensus 390 sf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g 434 (1091)
+|+|++ -.+++++++++.+++ +++++|++|+|||||++.+.+
T Consensus 6 ~~~~~~--~~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 6 DWIYSG--FSSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp ---------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHH--HHHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence 466764 346899999998887 689999999999999999986
No 245
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.12 E-value=5.4e-05 Score=79.83 Aligned_cols=71 Identities=20% Similarity=0.252 Sum_probs=45.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcc---CCCCCcEE--------EECCccccCCC-hHHHhhceeEEe------ccCccc
Q 001371 411 SGTTAALVGQSGSGKSTVISLIERF---YDPQAGEV--------LIDGINLKEFQ-LQWIRKKIGLVS------QEPVLF 472 (1091)
Q Consensus 411 ~G~~vaIVG~sGsGKSTLl~ll~g~---~~~~~G~I--------~idg~~i~~~~-~~~lr~~ia~V~------Q~~~Lf 472 (1091)
+.-.++|+||+||||||+.+.|.+. ...+.|.+ .-.|.++.+.. ...+-+++.+.. |+.+|+
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~l~ 87 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAFLA 87 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEEET
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEEEC
Confidence 3458999999999999999999844 34445554 23455555443 445556666666 445565
Q ss_pred cccHHHHhc
Q 001371 473 TGSIKDNIA 481 (1091)
Q Consensus 473 ~~TIreNI~ 481 (1091)
...|.+||.
T Consensus 88 g~~v~~~ir 96 (233)
T 3r20_A 88 GEDVSSEIR 96 (233)
T ss_dssp TEECTTGGG
T ss_pred Ceehhhhhc
Confidence 556665553
No 246
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.11 E-value=0.00065 Score=75.90 Aligned_cols=29 Identities=14% Similarity=0.181 Sum_probs=24.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccCCCC
Q 001371 411 SGTTAALVGQSGSGKSTVISLIERFYDPQ 439 (1091)
Q Consensus 411 ~G~~vaIVG~sGsGKSTLl~ll~g~~~~~ 439 (1091)
++..+.|.||+|+|||||++.+.+.+.+.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~ 64 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKR 64 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 35689999999999999999999877543
No 247
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.10 E-value=0.00021 Score=83.46 Aligned_cols=59 Identities=27% Similarity=0.335 Sum_probs=39.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCC------------CCCcEEEECCccccCCChHHHhhceeEEeccCccc
Q 001371 414 TAALVGQSGSGKSTVISLIERFYD------------PQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLF 472 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g~~~------------~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf 472 (1091)
+++|||++|+|||||++.|+|... +.+|.+.++|.++.-++..-+|+..++.+|....|
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~ 252 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKY 252 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCS
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHH
Confidence 799999999999999999999853 77899999998776666655565555555554444
No 248
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.10 E-value=0.00059 Score=70.44 Aligned_cols=27 Identities=22% Similarity=0.274 Sum_probs=23.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHhccCCCC
Q 001371 413 TTAALVGQSGSGKSTVISLIERFYDPQ 439 (1091)
Q Consensus 413 ~~vaIVG~sGsGKSTLl~ll~g~~~~~ 439 (1091)
.-+.|.||+|+|||||++.+.......
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~ 81 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR 81 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 789999999999999999999877543
No 249
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.05 E-value=9.7e-05 Score=77.16 Aligned_cols=42 Identities=31% Similarity=0.285 Sum_probs=37.3
Q ss_pred EEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCc--EEEECCc
Q 001371 407 ISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG--EVLIDGI 448 (1091)
Q Consensus 407 l~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G--~I~idg~ 448 (1091)
+.+++|.+++|+|++||||||+.+.|.+.+.|..| .+.+||.
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d 63 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGD 63 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECCh
Confidence 45678999999999999999999999999988888 8888763
No 250
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.03 E-value=8.9e-05 Score=83.57 Aligned_cols=48 Identities=17% Similarity=0.212 Sum_probs=42.3
Q ss_pred ccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECC
Q 001371 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG 447 (1091)
Q Consensus 400 ~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg 447 (1091)
.+++++++++++|..++|+|++|+|||||++.|++.+.+..|++.+-+
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~ 91 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIA 91 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 578899999999999999999999999999999999988777665533
No 251
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.02 E-value=0.00068 Score=71.97 Aligned_cols=131 Identities=16% Similarity=0.185 Sum_probs=69.7
Q ss_pred eeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhceeEEeccCcccc-ccHHHHhccCCCCC
Q 001371 409 ISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFT-GSIKDNIAYGKDDA 487 (1091)
Q Consensus 409 i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~-~TIreNI~~g~~~~ 487 (1091)
+.+|+.++++||+||||||++.+++.......|. ...+.++.|.|.... -++.+|+.......
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~----------------~~~~~~l~~~p~~~la~q~~~~~~~~~~~~ 136 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR----------------AAECNIVVTQPRRISAVSVAERVAFERGEE 136 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC----------------GGGCEEEEEESSHHHHHHHHHHHHHTTTCC
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC----------------CCceEEEEeccchHHHHHHHHHHHHHhccc
Confidence 4578999999999999999887765432221221 124667777776443 36667664211100
Q ss_pred CHHHHHHHHHHcccHHHHhhCCCCccc----ccccCCCC---CChHHHHHHHHHHHhhcCCCEEEeeCCCC-CCCHHhHH
Q 001371 488 TTEEIRVATELANAAKFIDKLPQGIDT----LVGEHGTQ---LSGGQKQRIAIARAILKDPRILLLDEATS-ALDAESEK 559 (1091)
Q Consensus 488 ~~~~i~~a~~~a~l~~~i~~lp~G~~T----~vge~G~~---LSGGQkQRialARAll~~~~IliLDE~tS-aLD~~te~ 559 (1091)
+ ... -|+.. .....+.. -..|+-.+. .+.-+++-+++|+||+-. ++|.....
T Consensus 137 ----~---~~~-----------~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~--l~~~l~~~~~lVlDEah~~~~~~~~~~ 196 (235)
T 3llm_A 137 ----P---GKS-----------CGYSVRFESILPRPHASIMFCTVGVLLRK--LEAGIRGISHVIVDEIHERDINTDFLL 196 (235)
T ss_dssp ----T---TSS-----------EEEEETTEEECCCSSSEEEEEEHHHHHHH--HHHCCTTCCEEEECCTTSCCHHHHHHH
T ss_pred ----c---Cce-----------EEEeechhhccCCCCCeEEEECHHHHHHH--HHhhhcCCcEEEEECCccCCcchHHHH
Confidence 0 000 01111 11001100 134655555 344689999999999976 46665443
Q ss_pred HHHHHHHHHcCCCeEE
Q 001371 560 VVQEALDRIMVNRTTV 575 (1091)
Q Consensus 560 ~i~~~l~~~~~~~T~I 575 (1091)
...+.+.....+..+|
T Consensus 197 ~~l~~i~~~~~~~~~i 212 (235)
T 3llm_A 197 VVLRDVVQAYPEVRIV 212 (235)
T ss_dssp HHHHHHHHHCTTSEEE
T ss_pred HHHHHHHhhCCCCeEE
Confidence 3333443434443333
No 252
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.98 E-value=7.5e-05 Score=83.99 Aligned_cols=45 Identities=11% Similarity=0.016 Sum_probs=39.7
Q ss_pred eeEEEeeeeeeCCCCCCCccccccceeeeCCCEEEEEcCCCCCccccc
Q 001371 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKVSAKLNFQFHSLKQLT 1088 (1091)
Q Consensus 1041 G~I~f~nVs~~Y~~rp~~~VLk~is~~I~~Ge~valVG~SG~~~~~~~ 1088 (1091)
.-++.+||+..|.+ +..||+++ |+|.+||.+||+||+|||||+|-
T Consensus 44 ~~i~~~~l~~~~~t--g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl 88 (347)
T 2obl_A 44 DPLLRQVIDQPFIL--GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLL 88 (347)
T ss_dssp CSTTCCCCCSEECC--SCHHHHHH-SCEETTCEEEEEECTTSSHHHHH
T ss_pred CCeeecccceecCC--CCEEEEee-eeecCCCEEEEECCCCCCHHHHH
Confidence 35899999999963 34699999 99999999999999999999983
No 253
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.96 E-value=0.0032 Score=70.89 Aligned_cols=37 Identities=16% Similarity=0.197 Sum_probs=29.5
Q ss_pred ccccceeEE---eeCCCEEEEEcCCCCcHHHHHHHHhccCC
Q 001371 400 QIFSGFSIS---ISSGTTAALVGQSGSGKSTVISLIERFYD 437 (1091)
Q Consensus 400 ~vL~~isl~---i~~G~~vaIVG~sGsGKSTLl~ll~g~~~ 437 (1091)
+-|+.+ +. +++|+.+.|.|++|+|||||+.-++....
T Consensus 49 ~~LD~~-Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~ 88 (356)
T 1u94_A 49 LSLDIA-LGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 88 (356)
T ss_dssp HHHHHH-TSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHH-hccCCccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 445554 33 89999999999999999999987776543
No 254
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.93 E-value=0.00049 Score=72.87 Aligned_cols=28 Identities=18% Similarity=0.114 Sum_probs=25.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccCCC
Q 001371 411 SGTTAALVGQSGSGKSTVISLIERFYDP 438 (1091)
Q Consensus 411 ~G~~vaIVG~sGsGKSTLl~ll~g~~~~ 438 (1091)
++..+.|+||+|+||||+++.+...+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~ 78 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANE 78 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6889999999999999999999987654
No 255
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.91 E-value=2.9e-05 Score=90.64 Aligned_cols=40 Identities=8% Similarity=0.012 Sum_probs=35.9
Q ss_pred ceeEEEeeeeeeCCCCCCCccccccceeeeCCCEEEEEcCCCCCccccc
Q 001371 1040 KGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKVSAKLNFQFHSLKQLT 1088 (1091)
Q Consensus 1040 ~G~I~f~nVs~~Y~~rp~~~VLk~is~~I~~Ge~valVG~SG~~~~~~~ 1088 (1091)
.+.|+++||+++|. ++||+|++||.+|||||||||||||.
T Consensus 116 ~~mi~~~nl~~~y~---------~vsl~i~~Ge~v~IvGpnGsGKSTLl 155 (460)
T 2npi_A 116 HTMKYIYNLHFMLE---------KIRMSNFEGPRVVIVGGSQTGKTSLS 155 (460)
T ss_dssp CTHHHHHHHHHHHH---------HHHHHSSSCCCEEEEESTTSSHHHHH
T ss_pred cchhhhhhhhehhh---------cCceEeCCCCEEEEECCCCCCHHHHH
Confidence 45688999999983 79999999999999999999999984
No 256
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.90 E-value=0.0004 Score=69.65 Aligned_cols=33 Identities=27% Similarity=0.342 Sum_probs=28.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECC
Q 001371 411 SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG 447 (1091)
Q Consensus 411 ~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg 447 (1091)
.|+.++|+|++||||||++++|.+.+.+ +.+|+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~ 35 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS 35 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence 4789999999999999999999998754 55654
No 257
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.89 E-value=0.00025 Score=80.01 Aligned_cols=41 Identities=20% Similarity=0.336 Sum_probs=35.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCcccc
Q 001371 411 SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLK 451 (1091)
Q Consensus 411 ~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~ 451 (1091)
++..++|+|++|||||||++.|.|.+.+.+|+|.+.+.|..
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~ 113 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPS 113 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCC
Confidence 56799999999999999999999999988888877665543
No 258
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.85 E-value=0.00055 Score=69.93 Aligned_cols=34 Identities=15% Similarity=0.461 Sum_probs=20.9
Q ss_pred ccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhc
Q 001371 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIER 434 (1091)
Q Consensus 400 ~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g 434 (1091)
.++++++++.++. +++++|++|+|||||++.+.+
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 3788999988777 889999999999999999987
No 259
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.84 E-value=0.0011 Score=77.65 Aligned_cols=57 Identities=14% Similarity=0.200 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHHhhcCCCEEEeeCCC-CCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhh
Q 001371 525 GGQKQRIAIARAILKDPRILLLDEAT-SALDAESEKVVQEALDRIMVNRTTVIVAHRLSTV 584 (1091)
Q Consensus 525 GGQkQRialARAll~~~~IliLDE~t-SaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i 584 (1091)
+.|++....++..+++++++|+.... ..+... ...+.+.+++ .++.+|+|.++....
T Consensus 87 ~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~-d~~l~~~l~~--~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 87 PFLAQIRQQAEIAMDEADVIIFMVNGREGVTAA-DEEVAKILYR--TKKPVVLAVNKLDNT 144 (456)
T ss_dssp CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHH-HHHHHHHHTT--CCSCEEEEEECC---
T ss_pred HHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChH-HHHHHHHHHH--cCCCEEEEEECccch
Confidence 35888889999999999988765443 344444 3445555544 578899999887643
No 260
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.81 E-value=0.00012 Score=75.66 Aligned_cols=69 Identities=19% Similarity=0.334 Sum_probs=37.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC------CCCCcEEEECCc--cccCCCh--------HHHhhceeEEeccCccccccHH
Q 001371 414 TAALVGQSGSGKSTVISLIERFY------DPQAGEVLIDGI--NLKEFQL--------QWIRKKIGLVSQEPVLFTGSIK 477 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g~~------~~~~G~I~idg~--~i~~~~~--------~~lr~~ia~V~Q~~~Lf~~TIr 477 (1091)
+++|+|++||||||+.+.|...+ +|..|...++.. +-...+. ..++.....+.|+.++++.++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~vi~d~~~~ 81 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFKEPVEENPYFEQYYKDLKKTVFKMQIYMLTARSKQLKQAKNLENIIFDRTLL 81 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEECCCGGGCTTHHHHTTCHHHHHHHHHHHHHHHHHHHHC------CEEEESCTT
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEcccccccHHHHHHHhCccccchhHHHHHHHHHHHHHHHhhccCCEEEEeccc
Confidence 68999999999999999999843 333332211110 1000110 0123333556677788888888
Q ss_pred HHhcc
Q 001371 478 DNIAY 482 (1091)
Q Consensus 478 eNI~~ 482 (1091)
+|+.+
T Consensus 82 ~~~~~ 86 (205)
T 2jaq_A 82 EDPIF 86 (205)
T ss_dssp THHHH
T ss_pred hhHHH
Confidence 77765
No 261
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.80 E-value=0.0029 Score=69.02 Aligned_cols=28 Identities=21% Similarity=0.297 Sum_probs=24.9
Q ss_pred eeCCCEEEEEcCCCCcHHHHHHHHhccC
Q 001371 409 ISSGTTAALVGQSGSGKSTVISLIERFY 436 (1091)
Q Consensus 409 i~~G~~vaIVG~sGsGKSTLl~ll~g~~ 436 (1091)
++++.-+.|.||+|+|||||++.+.+.+
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4567789999999999999999999875
No 262
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.77 E-value=0.0015 Score=72.28 Aligned_cols=30 Identities=13% Similarity=0.215 Sum_probs=26.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHhccCCCCCcE
Q 001371 413 TTAALVGQSGSGKSTVISLIERFYDPQAGE 442 (1091)
Q Consensus 413 ~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~ 442 (1091)
..+.|+||+|+||||+++.|.+...+..|.
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~ 77 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEA 77 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGG
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcc
Confidence 578999999999999999999998776664
No 263
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.74 E-value=0.0015 Score=72.09 Aligned_cols=39 Identities=21% Similarity=0.345 Sum_probs=31.3
Q ss_pred EEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECC
Q 001371 407 ISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG 447 (1091)
Q Consensus 407 l~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg 447 (1091)
+.++++..+.|.||+|+|||||++++.+... .+-+.+++
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~--~~~i~v~~ 82 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKG 82 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHTT--CEEEEECH
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHhC--CCEEEEEh
Confidence 4567899999999999999999999999864 34444443
No 264
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.68 E-value=0.00083 Score=67.36 Aligned_cols=27 Identities=22% Similarity=0.432 Sum_probs=23.5
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccC
Q 001371 410 SSGTTAALVGQSGSGKSTVISLIERFY 436 (1091)
Q Consensus 410 ~~G~~vaIVG~sGsGKSTLl~ll~g~~ 436 (1091)
++|.+++|||++|+|||||++.|.+..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999999864
No 265
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.63 E-value=6.6e-05 Score=84.36 Aligned_cols=44 Identities=2% Similarity=-0.161 Sum_probs=38.5
Q ss_pred eEEEeeeeeeCCCCCCCccccccceeeeCCCEEEEEcCCCCCccccc
Q 001371 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKVSAKLNFQFHSLKQLT 1088 (1091)
Q Consensus 1042 ~I~f~nVs~~Y~~rp~~~VLk~is~~I~~Ge~valVG~SG~~~~~~~ 1088 (1091)
.|+.+|++++|.. ..+|+++||++++|+.++|+||+|||||||.
T Consensus 29 ~ie~~~~~~~~~~---~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl 72 (337)
T 2qm8_A 29 LAESRRADHRAAV---RDLIDAVLPQTGRAIRVGITGVPGVGKSTTI 72 (337)
T ss_dssp HHTCSSHHHHHHH---HHHHHHHGGGCCCSEEEEEECCTTSCHHHHH
T ss_pred HHeeCCcccccCh---HHHHHhCCcccCCCeEEEEECCCCCCHHHHH
Confidence 4678889999942 2599999999999999999999999999974
No 266
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.54 E-value=0.0014 Score=64.24 Aligned_cols=30 Identities=33% Similarity=0.575 Sum_probs=24.4
Q ss_pred cceeEEeeCCCEEEEEcCCCCcHHHHHHHHh
Q 001371 403 SGFSISISSGTTAALVGQSGSGKSTVISLIE 433 (1091)
Q Consensus 403 ~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~ 433 (1091)
++..+++.+| +.+|+||+|||||||+.+|.
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 3445555555 89999999999999999987
No 267
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.53 E-value=0.00052 Score=77.48 Aligned_cols=37 Identities=16% Similarity=0.276 Sum_probs=28.9
Q ss_pred cccceeEEeeCC--CEEEEEcCCCCcHHHHHHHHhccCC
Q 001371 401 IFSGFSISISSG--TTAALVGQSGSGKSTVISLIERFYD 437 (1091)
Q Consensus 401 vL~~isl~i~~G--~~vaIVG~sGsGKSTLl~ll~g~~~ 437 (1091)
+++.+.-.+..| ..+.|.||+|+||||+++.+.+.+.
T Consensus 45 ~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 45 AVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp THHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 455555555555 4499999999999999999998864
No 268
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.53 E-value=0.0013 Score=69.23 Aligned_cols=44 Identities=14% Similarity=0.150 Sum_probs=30.2
Q ss_pred cCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchh
Q 001371 539 KDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLST 583 (1091)
Q Consensus 539 ~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~ 583 (1091)
.++.++++||+-. +|......+.+.+.+...+..+|++|++...
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~ 168 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQK 168 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGG
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChHh
Confidence 3578999999866 6777666666666554344566777777653
No 269
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.47 E-value=0.0013 Score=66.92 Aligned_cols=32 Identities=22% Similarity=0.368 Sum_probs=26.8
Q ss_pred ceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcc
Q 001371 404 GFSISISSGTTAALVGQSGSGKSTVISLIERF 435 (1091)
Q Consensus 404 ~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~ 435 (1091)
++|++.++|..++|+|++||||||+.+.|...
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888999999999999999999999999876
No 270
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.44 E-value=0.0027 Score=70.76 Aligned_cols=28 Identities=21% Similarity=0.300 Sum_probs=25.1
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhcc
Q 001371 408 SISSGTTAALVGQSGSGKSTVISLIERF 435 (1091)
Q Consensus 408 ~i~~G~~vaIVG~sGsGKSTLl~ll~g~ 435 (1091)
-+++|+.+.|.||+|||||||+.-++..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5799999999999999999999877753
No 271
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.38 E-value=0.0033 Score=73.43 Aligned_cols=106 Identities=17% Similarity=0.245 Sum_probs=66.6
Q ss_pred ccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhceeEEeccCccccccHHHH
Q 001371 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDN 479 (1091)
Q Consensus 400 ~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIreN 479 (1091)
+-|+.+.--+++|+++.|.|++|+|||||+.-++.......| . .+.|++=+
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g------~------------~vl~~slE----------- 238 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEG------V------------GVGIYSLE----------- 238 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC------C------------CEEEEESS-----------
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC------C------------eEEEEECC-----------
Confidence 356666656899999999999999999999887765432222 0 23333222
Q ss_pred hccCCCCCCHHHHHHHH--HHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCCEEEeeCCCCCC
Q 001371 480 IAYGKDDATTEEIRVAT--ELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL 553 (1091)
Q Consensus 480 I~~g~~~~~~~~i~~a~--~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~IliLDE~tSaL 553 (1091)
.+.+++..-+ ...+ ++. ..+- .| +|+..+++|+.-|-..+.+.++++.|+|...+
T Consensus 239 -------~~~~~l~~R~~~~~~~-------i~~---~~l~-~g-~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~ 295 (444)
T 2q6t_A 239 -------MPAAQLTLRMMCSEAR-------IDM---NRVR-LG-QLTDRDFSRLVDVASRLSEAPIYIDDTPDLTL 295 (444)
T ss_dssp -------SCHHHHHHHHHHHHTT-------CCT---TTCC-GG-GCCHHHHHHHHHHHHHHHTSCEEEECCTTCBH
T ss_pred -------CCHHHHHHHHHHHHcC-------CCH---HHHh-CC-CCCHHHHHHHHHHHHHHhcCCEEEECCCCCCH
Confidence 3344443211 1111 111 0111 12 69999999999888888889999988764433
No 272
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.37 E-value=0.00063 Score=74.77 Aligned_cols=48 Identities=23% Similarity=0.268 Sum_probs=41.5
Q ss_pred cc-eeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCcccc
Q 001371 403 SG-FSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLK 451 (1091)
Q Consensus 403 ~~-isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~ 451 (1091)
++ ++++.+ |+.++++|++|+||||++..|.+.+.+..|+|.+.+.|..
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~ 137 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVY 137 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 45 777776 9999999999999999999999999988888888776654
No 273
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.34 E-value=0.009 Score=63.73 Aligned_cols=58 Identities=10% Similarity=0.155 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHHhh---cCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc----CCCeEEEEccCchh
Q 001371 525 GGQKQRIAIARAIL---KDPRILLLDEATSALDAESEKVVQEALDRIM----VNRTTVIVAHRLST 583 (1091)
Q Consensus 525 GGQkQRialARAll---~~~~IliLDE~tSaLD~~te~~i~~~l~~~~----~~~T~I~ItHrls~ 583 (1091)
.|++.+-.+.|+++ ++++++|+--..+.++... ..+.+.+.+.+ .++++|+++|....
T Consensus 87 ~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~-~~~~~~l~~~~~~~~~~~~iilv~nK~Dl 151 (247)
T 3lxw_A 87 KTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQD-QQAVRQVRDMFGEDVLKWMVIVFTRKEDL 151 (247)
T ss_dssp HHSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCHHH-HHHHHHHHHHHCGGGGGGEEEEEECGGGG
T ss_pred cHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCHHH-HHHHHHHHHHhChhhhccEEEEEEchHhc
Confidence 34555666777774 8888777554444554433 34444454432 26789999998653
No 274
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.34 E-value=9.2e-05 Score=84.38 Aligned_cols=86 Identities=14% Similarity=0.089 Sum_probs=62.5
Q ss_pred CCChHHHHHHHHHHHhh-cCCCEEEeeC---CC------CCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchhhhccCe
Q 001371 522 QLSGGQKQRIAIARAIL-KDPRILLLDE---AT------SALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADM 589 (1091)
Q Consensus 522 ~LSGGQkQRialARAll-~~~~IliLDE---~t------SaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~aD~ 589 (1091)
.+|+|++||..+++++. .+|++++||| |+ +++|+.....+.+.|.++.+ +.|+|+++|--..-+-+|+
T Consensus 258 ~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~~~~r~~~~ 337 (365)
T 1lw7_A 258 CIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPSYLDRYNQV 337 (365)
T ss_dssp HHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECSSHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHH
Confidence 45778889999999885 5999999999 65 68999999999999977655 8899999986444445677
Q ss_pred EEEEeCCEEeeecChhHHhc
Q 001371 590 IAVIHRGKIVEKGTHSKLVE 609 (1091)
Q Consensus 590 Iivl~~G~Ive~Gt~~eL~~ 609 (1091)
+.++++ +.+.|+.+||.+
T Consensus 338 i~~i~~--~l~~~~~~~~~~ 355 (365)
T 1lw7_A 338 KAVIEK--VLNEEEISELQN 355 (365)
T ss_dssp HHHHHH--HTSCCCCSSCCC
T ss_pred HHHHHH--HhcccchhHhhc
Confidence 766654 556667777654
No 275
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.32 E-value=0.0096 Score=57.71 Aligned_cols=30 Identities=20% Similarity=0.318 Sum_probs=24.9
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccCCCC
Q 001371 410 SSGTTAALVGQSGSGKSTVISLIERFYDPQ 439 (1091)
Q Consensus 410 ~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~ 439 (1091)
+.+.-+.|.||+|+|||++++.|.......
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~~~ 51 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGRNA 51 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSSTTT
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCCcc
Confidence 355678999999999999999998876543
No 276
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.31 E-value=0.0017 Score=65.21 Aligned_cols=38 Identities=18% Similarity=0.170 Sum_probs=30.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhccCCCC---CcEEEECCcc
Q 001371 412 GTTAALVGQSGSGKSTVISLIERFYDPQ---AGEVLIDGIN 449 (1091)
Q Consensus 412 G~~vaIVG~sGsGKSTLl~ll~g~~~~~---~G~I~idg~~ 449 (1091)
-..++|+|+||||||||++.|++.+.+. -|.|..++++
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 3689999999999999999999886543 3667776654
No 277
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.28 E-value=0.002 Score=65.39 Aligned_cols=75 Identities=23% Similarity=0.423 Sum_probs=49.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC-------------CCCCcEEEECCccccCCChHHHhhceeEEeccCccccccHHHHh
Q 001371 414 TAALVGQSGSGKSTVISLIERFY-------------DPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNI 480 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g~~-------------~~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIreNI 480 (1091)
.+.|+|||||||+||++.|+..+ +|-.|+ +||+|..-++.+...+.+ .++-+|-.+.+..|
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE--~~G~dY~Fvs~~eF~~~i---~~g~flE~~~~~g~- 76 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGE--VNGKDYNFVSVDEFKSMI---KNNEFIEWAQFSGN- 76 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HTTCEEEEEEETTE-
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCC--cCCceeEeecHHHHHHHH---HcCCEEEEEEEcCc-
Confidence 37899999999999999988654 244565 378888777777766553 34555555555555
Q ss_pred ccCCCCCCHHHHHHHHH
Q 001371 481 AYGKDDATTEEIRVATE 497 (1091)
Q Consensus 481 ~~g~~~~~~~~i~~a~~ 497 (1091)
.||-+ .+.+.++++
T Consensus 77 ~YGt~---~~~v~~~l~ 90 (186)
T 1ex7_A 77 YYGST---VASVKQVSK 90 (186)
T ss_dssp EEEEE---HHHHHHHHH
T ss_pred eeeee---cceeeehhh
Confidence 44533 445555443
No 278
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.26 E-value=0.0015 Score=70.21 Aligned_cols=42 Identities=31% Similarity=0.479 Sum_probs=34.3
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCcccc
Q 001371 408 SISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLK 451 (1091)
Q Consensus 408 ~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~ 451 (1091)
..+++..+.|+|++||||||+.+.|.+.+. .|.+.+||-.++
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~r 69 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSFR 69 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHHH
Confidence 455678999999999999999999999875 356788885543
No 279
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.24 E-value=0.0077 Score=65.96 Aligned_cols=29 Identities=14% Similarity=0.209 Sum_probs=25.6
Q ss_pred EEeeCCCEEEEEcCCCCcHHHHHHHHhcc
Q 001371 407 ISISSGTTAALVGQSGSGKSTVISLIERF 435 (1091)
Q Consensus 407 l~i~~G~~vaIVG~sGsGKSTLl~ll~g~ 435 (1091)
--+++|..+.|.||+|+|||||...+...
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 36889999999999999999999988753
No 280
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.24 E-value=0.0021 Score=72.96 Aligned_cols=41 Identities=22% Similarity=0.368 Sum_probs=34.6
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhcc-----------CCCCCcEEEECCc
Q 001371 408 SISSGTTAALVGQSGSGKSTVISLIERF-----------YDPQAGEVLIDGI 448 (1091)
Q Consensus 408 ~i~~G~~vaIVG~sGsGKSTLl~ll~g~-----------~~~~~G~I~idg~ 448 (1091)
.++.|.+++|||++|+|||||++.|.|. .+|..|.+.++|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 4567889999999999999999999998 6788898888764
No 281
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.22 E-value=0.0014 Score=66.70 Aligned_cols=39 Identities=31% Similarity=0.540 Sum_probs=32.6
Q ss_pred eeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEE-EECC
Q 001371 409 ISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV-LIDG 447 (1091)
Q Consensus 409 i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I-~idg 447 (1091)
.++|..++|+|++||||||+.+.|.+.+.+..|.+ .+|+
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 45789999999999999999999999988776665 3443
No 282
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.16 E-value=0.0017 Score=67.04 Aligned_cols=32 Identities=38% Similarity=0.501 Sum_probs=26.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECC
Q 001371 412 GTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG 447 (1091)
Q Consensus 412 G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg 447 (1091)
..+++|+|++||||||+.+.|.+.+ |...+|+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~ 49 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEG 49 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeC
Confidence 5689999999999999999999876 4555655
No 283
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.16 E-value=0.0093 Score=67.43 Aligned_cols=27 Identities=22% Similarity=0.270 Sum_probs=24.1
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccC
Q 001371 410 SSGTTAALVGQSGSGKSTVISLIERFY 436 (1091)
Q Consensus 410 ~~G~~vaIVG~sGsGKSTLl~ll~g~~ 436 (1091)
++..-+.|.||+|+|||||++.+....
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999999875
No 284
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.15 E-value=0.00051 Score=77.87 Aligned_cols=58 Identities=21% Similarity=0.230 Sum_probs=36.5
Q ss_pred CCcEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECC
Q 001371 381 RGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG 447 (1091)
Q Consensus 381 ~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg 447 (1091)
.+.|.++|++..|. .+.++++++|+| +|||++|+|||||++.|.+.-.+..|.+..++
T Consensus 15 ~~~v~~~~l~~~~~---~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~ 72 (361)
T 2qag_A 15 PGYVGFANLPNQVH---RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIPGAA 72 (361)
T ss_dssp ------CCHHHHHH---THHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC----------
T ss_pred CceEEeccchHHhC---CeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcccCCC
Confidence 45688999988885 246889999977 99999999999999999987666555554433
No 285
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.13 E-value=0.0037 Score=61.98 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 001371 414 TAALVGQSGSGKSTVISLIERFY 436 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g~~ 436 (1091)
+++|+|++|+|||||++.+.|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
No 286
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.13 E-value=0.021 Score=65.66 Aligned_cols=29 Identities=31% Similarity=0.613 Sum_probs=25.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccCCCC
Q 001371 411 SGTTAALVGQSGSGKSTVISLIERFYDPQ 439 (1091)
Q Consensus 411 ~G~~vaIVG~sGsGKSTLl~ll~g~~~~~ 439 (1091)
++..++++|++|+||||++.-|...+...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 45689999999999999999999887653
No 287
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.07 E-value=0.0016 Score=73.32 Aligned_cols=42 Identities=7% Similarity=-0.056 Sum_probs=35.1
Q ss_pred eeeeeeCCCCCCCccccccce-------eeeCCCEEEEEcCCCCCccccc
Q 001371 1046 HHVSFKYPSRPDVQVFRDLNL-------KIRAGKVSAKLNFQFHSLKQLT 1088 (1091)
Q Consensus 1046 ~nVs~~Y~~rp~~~VLk~is~-------~I~~Ge~valVG~SG~~~~~~~ 1088 (1091)
.++++||.+. ..+.|+++.+ .+++|+.++++||||||||||-
T Consensus 92 ~~~~iR~~~~-~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL 140 (356)
T 3jvv_A 92 AGAVFRTIPS-KVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTL 140 (356)
T ss_dssp EEEEEEEECC-SCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHH
T ss_pred cEEEEEECCC-CCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHH
Confidence 6889998643 3358888887 8899999999999999999874
No 288
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.06 E-value=0.0015 Score=71.92 Aligned_cols=28 Identities=14% Similarity=0.006 Sum_probs=25.3
Q ss_pred ccccceeeeCCCEEEEEcCCCCCccccc
Q 001371 1061 FRDLNLKIRAGKVSAKLNFQFHSLKQLT 1088 (1091)
Q Consensus 1061 Lk~is~~I~~Ge~valVG~SG~~~~~~~ 1088 (1091)
++.+||++++|+.++||||+||||||+.
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSL 117 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHH
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHH
Confidence 4578999999999999999999999974
No 289
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.04 E-value=0.017 Score=65.48 Aligned_cols=40 Identities=23% Similarity=0.400 Sum_probs=31.5
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCcc
Q 001371 410 SSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGIN 449 (1091)
Q Consensus 410 ~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~ 449 (1091)
.+|..+.|.||+|+||||+++.+..........+.+++..
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~ 107 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSE 107 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchh
Confidence 4577899999999999999999999886544555555533
No 290
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.03 E-value=0.012 Score=64.39 Aligned_cols=26 Identities=27% Similarity=0.249 Sum_probs=22.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccC
Q 001371 411 SGTTAALVGQSGSGKSTVISLIERFY 436 (1091)
Q Consensus 411 ~G~~vaIVG~sGsGKSTLl~ll~g~~ 436 (1091)
+...+.+.||+|+|||+|++.|.+.+
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 33567888999999999999999887
No 291
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.96 E-value=0.0074 Score=61.53 Aligned_cols=28 Identities=18% Similarity=0.198 Sum_probs=25.2
Q ss_pred eeCCCEEEEEcCCCCcHHHHHHHHhccC
Q 001371 409 ISSGTTAALVGQSGSGKSTVISLIERFY 436 (1091)
Q Consensus 409 i~~G~~vaIVG~sGsGKSTLl~ll~g~~ 436 (1091)
+|+...+.|.||.|+||||++..|.+++
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 6777789999999999999999999875
No 292
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=95.93 E-value=0.00076 Score=77.29 Aligned_cols=30 Identities=17% Similarity=0.200 Sum_probs=28.4
Q ss_pred ccccccceeeeCCC--------------------EEEEEcCCCCCccccc
Q 001371 1059 QVFRDLNLKIRAGK--------------------VSAKLNFQFHSLKQLT 1088 (1091)
Q Consensus 1059 ~VLk~is~~I~~Ge--------------------~valVG~SG~~~~~~~ 1088 (1091)
.+|+||||+|++|| .+|||||||||||||-
T Consensus 37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLl 86 (413)
T 1tq4_A 37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFI 86 (413)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHH
T ss_pred HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHH
Confidence 59999999999999 9999999999999974
No 293
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.93 E-value=0.029 Score=59.95 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=22.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccC
Q 001371 411 SGTTAALVGQSGSGKSTVISLIERFY 436 (1091)
Q Consensus 411 ~G~~vaIVG~sGsGKSTLl~ll~g~~ 436 (1091)
+..-+.|.||+|+||||+++.+.+.+
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34568899999999999999999865
No 294
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.93 E-value=0.0033 Score=63.59 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 001371 414 TAALVGQSGSGKSTVISLIERF 435 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g~ 435 (1091)
+++++|++|+|||||++.|.+.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999999984
No 295
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=95.85 E-value=0.0029 Score=80.82 Aligned_cols=47 Identities=11% Similarity=0.027 Sum_probs=35.6
Q ss_pred ceeEEEee-----eeeeCCCCCCCccccccceeeeC-------CCEEEEEcCCCCCccccc
Q 001371 1040 KGEIELHH-----VSFKYPSRPDVQVFRDLNLKIRA-------GKVSAKLNFQFHSLKQLT 1088 (1091)
Q Consensus 1040 ~G~I~f~n-----Vs~~Y~~rp~~~VLk~is~~I~~-------Ge~valVG~SG~~~~~~~ 1088 (1091)
++.|+++| |+++|+. +.+|++|++|++++ |+.++|+||+|||||||-
T Consensus 748 ~~~l~i~~~rHP~l~~~~~~--~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlL 806 (1022)
T 2o8b_B 748 PPFLELKGSRHPCITKTFFG--DDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLM 806 (1022)
T ss_dssp CCCEEEEEECCCC------C--CCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHH
T ss_pred CceEEEEeccccEEEEEecC--CceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHH
Confidence 45799999 9999953 23599999999998 999999999999999873
No 296
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.77 E-value=0.03 Score=63.12 Aligned_cols=29 Identities=24% Similarity=0.327 Sum_probs=25.0
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhccC
Q 001371 408 SISSGTTAALVGQSGSGKSTVISLIERFY 436 (1091)
Q Consensus 408 ~i~~G~~vaIVG~sGsGKSTLl~ll~g~~ 436 (1091)
-+++|+.+.|.||+|+|||||+.-++...
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~ 98 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQA 98 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHH
Confidence 47899999999999999999997766543
No 297
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.71 E-value=0.0049 Score=62.32 Aligned_cols=26 Identities=27% Similarity=0.514 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCC
Q 001371 414 TAALVGQSGSGKSTVISLIERFYDPQ 439 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g~~~~~ 439 (1091)
+++|||++|+|||||++.+.+...+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~ 29 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSD 29 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC----
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc
Confidence 68999999999999999999975443
No 298
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.68 E-value=0.0026 Score=73.89 Aligned_cols=27 Identities=15% Similarity=-0.028 Sum_probs=25.2
Q ss_pred cccceeeeCCCEEEEEcCCCCCccccc
Q 001371 1062 RDLNLKIRAGKVSAKLNFQFHSLKQLT 1088 (1091)
Q Consensus 1062 k~is~~I~~Ge~valVG~SG~~~~~~~ 1088 (1091)
+++||++++|+.++|||+||||||||.
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl 310 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTI 310 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHH
T ss_pred CCceeeccCCeEEEEECCCcccHHHHH
Confidence 688999999999999999999999975
No 299
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.66 E-value=0.0098 Score=60.32 Aligned_cols=25 Identities=36% Similarity=0.569 Sum_probs=20.9
Q ss_pred CCCEEEEEcCCCCcHHHHH-HHHhcc
Q 001371 411 SGTTAALVGQSGSGKSTVI-SLIERF 435 (1091)
Q Consensus 411 ~G~~vaIVG~sGsGKSTLl-~ll~g~ 435 (1091)
+|+.+.++||.||||||++ +++.+.
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHH
Confidence 5889999999999999997 555444
No 300
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.62 E-value=0.061 Score=59.09 Aligned_cols=27 Identities=22% Similarity=0.396 Sum_probs=23.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccCC
Q 001371 411 SGTTAALVGQSGSGKSTVISLIERFYD 437 (1091)
Q Consensus 411 ~G~~vaIVG~sGsGKSTLl~ll~g~~~ 437 (1091)
++..+.|.||+|+||||+++.+...+.
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 455789999999999999998887763
No 301
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.60 E-value=0.013 Score=61.18 Aligned_cols=51 Identities=18% Similarity=0.217 Sum_probs=33.7
Q ss_pred CCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccC-----------chhhhccCeEEEEe
Q 001371 540 DPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHR-----------LSTVRNADMIAVIH 594 (1091)
Q Consensus 540 ~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHr-----------ls~i~~aD~Iivl~ 594 (1091)
+++++++||+-- ++.+.-+.+ ..+.+ .+.++|++-|+ ...+..||.|.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~~~ve~l-~~L~~--~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDRICEVA-NILAE--NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTHHHHHH-HHHHH--TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHHHHHHH-HHHHh--CCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 654422222 23333 37899999993 23456789988875
No 302
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.57 E-value=0.007 Score=62.46 Aligned_cols=29 Identities=31% Similarity=0.570 Sum_probs=23.7
Q ss_pred ceeEEeeCCCEEEEEcCCCCcHHHHHHHHh
Q 001371 404 GFSISISSGTTAALVGQSGSGKSTVISLIE 433 (1091)
Q Consensus 404 ~isl~i~~G~~vaIVG~sGsGKSTLl~ll~ 433 (1091)
+.++.+.+| +++|+||+||||||++.+|.
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 445555554 99999999999999999886
No 303
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.57 E-value=0.018 Score=65.33 Aligned_cols=29 Identities=31% Similarity=0.489 Sum_probs=25.2
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccCCC
Q 001371 410 SSGTTAALVGQSGSGKSTVISLIERFYDP 438 (1091)
Q Consensus 410 ~~G~~vaIVG~sGsGKSTLl~ll~g~~~~ 438 (1091)
..+..+.|.||+|+||||+++.+.+....
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46778999999999999999999987643
No 304
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.57 E-value=0.0066 Score=60.93 Aligned_cols=27 Identities=22% Similarity=0.349 Sum_probs=24.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccCC
Q 001371 411 SGTTAALVGQSGSGKSTVISLIERFYD 437 (1091)
Q Consensus 411 ~G~~vaIVG~sGsGKSTLl~ll~g~~~ 437 (1091)
.|..+.|+|++||||||+.+.|...+.
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 367899999999999999999998764
No 305
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.57 E-value=0.055 Score=60.05 Aligned_cols=27 Identities=22% Similarity=0.254 Sum_probs=24.2
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccC
Q 001371 410 SSGTTAALVGQSGSGKSTVISLIERFY 436 (1091)
Q Consensus 410 ~~G~~vaIVG~sGsGKSTLl~ll~g~~ 436 (1091)
++..-+.|.||+|+|||+|++.+.+..
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 456789999999999999999999876
No 306
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.55 E-value=0.0093 Score=60.28 Aligned_cols=34 Identities=32% Similarity=0.591 Sum_probs=25.5
Q ss_pred EEEEEcCCCCcHHHHHHHHh-cc----CCCCCc----EEEECC
Q 001371 414 TAALVGQSGSGKSTVISLIE-RF----YDPQAG----EVLIDG 447 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~-g~----~~~~~G----~I~idg 447 (1091)
+++|+|++|+|||||++.++ +. +.|+.| .+.++|
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~ 64 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDG 64 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETT
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECC
Confidence 79999999999999997555 43 566655 455554
No 307
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.54 E-value=0.0031 Score=70.83 Aligned_cols=27 Identities=15% Similarity=0.047 Sum_probs=24.4
Q ss_pred cccceeeeCCCEEEEEcCCCCCccccc
Q 001371 1062 RDLNLKIRAGKVSAKLNFQFHSLKQLT 1088 (1091)
Q Consensus 1062 k~is~~I~~Ge~valVG~SG~~~~~~~ 1088 (1091)
..+||++++|+.++||||+|||||||.
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSL 174 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHH
Confidence 357889999999999999999999974
No 308
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.54 E-value=0.0021 Score=71.43 Aligned_cols=38 Identities=26% Similarity=0.396 Sum_probs=34.3
Q ss_pred ccccceeEEeeCCCE--EEEEcCCCCcHHHHHHHHhccCC
Q 001371 400 QIFSGFSISISSGTT--AALVGQSGSGKSTVISLIERFYD 437 (1091)
Q Consensus 400 ~vL~~isl~i~~G~~--vaIVG~sGsGKSTLl~ll~g~~~ 437 (1091)
.+++++++.+++|+. ++|+|++||||||+.++|.+.+.
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 478889999999999 99999999999999999998653
No 309
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.46 E-value=0.0068 Score=62.40 Aligned_cols=21 Identities=38% Similarity=0.597 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 001371 414 TAALVGQSGSGKSTVISLIER 434 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g 434 (1091)
+++|+|++||||||+.+.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999999
No 310
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.41 E-value=0.006 Score=69.96 Aligned_cols=36 Identities=19% Similarity=0.230 Sum_probs=31.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEEC
Q 001371 411 SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLID 446 (1091)
Q Consensus 411 ~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~id 446 (1091)
.+..++|+||+||||||+++.|+..+.+..+.|.+-
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~ 69 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIII 69 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEE
Confidence 677899999999999999999998887777777663
No 311
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.39 E-value=0.0023 Score=72.49 Aligned_cols=30 Identities=7% Similarity=-0.106 Sum_probs=28.4
Q ss_pred ccccccceeeeCCCEEEEEcCCCCCccccc
Q 001371 1059 QVFRDLNLKIRAGKVSAKLNFQFHSLKQLT 1088 (1091)
Q Consensus 1059 ~VLk~is~~I~~Ge~valVG~SG~~~~~~~ 1088 (1091)
++|+++++.|++|+.++|+||+|||||+|.
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~ 186 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLA 186 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHH
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHH
Confidence 489999999999999999999999999985
No 312
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.39 E-value=0.0081 Score=65.62 Aligned_cols=35 Identities=37% Similarity=0.394 Sum_probs=29.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECC
Q 001371 411 SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG 447 (1091)
Q Consensus 411 ~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg 447 (1091)
+|..+.|+||+||||||+.+.|...++ .|.+.|++
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 467899999999999999999988663 36677776
No 313
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=95.39 E-value=0.0027 Score=73.46 Aligned_cols=29 Identities=14% Similarity=0.098 Sum_probs=27.1
Q ss_pred ccccccceeeeCCCEEEEEcCCCCCccccc
Q 001371 1059 QVFRDLNLKIRAGKVSAKLNFQFHSLKQLT 1088 (1091)
Q Consensus 1059 ~VLk~is~~I~~Ge~valVG~SG~~~~~~~ 1088 (1091)
.+|++++|++++| .++||||+|||||+|-
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl 77 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIV 77 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHT
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHH
Confidence 3789999999999 9999999999999974
No 314
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.39 E-value=0.0038 Score=78.34 Aligned_cols=34 Identities=15% Similarity=0.258 Sum_probs=30.7
Q ss_pred ceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCC
Q 001371 404 GFSISISSGTTAALVGQSGSGKSTVISLIERFYD 437 (1091)
Q Consensus 404 ~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~ 437 (1091)
..++.+++|+.+.++||+|+|||||+++|.+...
T Consensus 503 ~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 503 FLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp TTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred HHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC
Confidence 4567889999999999999999999999999874
No 315
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.36 E-value=0.005 Score=69.90 Aligned_cols=58 Identities=22% Similarity=0.289 Sum_probs=44.9
Q ss_pred HHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhccCeEEEE
Q 001371 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVI 593 (1091)
Q Consensus 530 RialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl 593 (1091)
+.+|++||..+|+++++|||+ |.++ +..+++....+.+++.++|..+....+|+++.|
T Consensus 199 ~~~l~~~L~~~pd~illdE~~---d~e~---~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l 256 (372)
T 2ewv_A 199 ADALRAALREDPDVIFVGEMR---DLET---VETALRAAETGHLVFGTLHTNTAIDTIHRIVDI 256 (372)
T ss_dssp HHHHHHHTTSCCSEEEESCCC---SHHH---HHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHT
T ss_pred HHHHHHHhhhCcCEEEECCCC---CHHH---HHHHHHHHhcCCEEEEEECcchHHHHHHHHHHh
Confidence 569999999999999999999 7654 334454445688999999988766667776544
No 316
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.36 E-value=0.045 Score=56.37 Aligned_cols=23 Identities=22% Similarity=0.354 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 001371 414 TAALVGQSGSGKSTVISLIERFY 436 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g~~ 436 (1091)
.+.|.||+|+||||+++.+...+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 49999999999999999998765
No 317
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=95.34 E-value=0.0085 Score=65.59 Aligned_cols=34 Identities=24% Similarity=0.394 Sum_probs=30.3
Q ss_pred ccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhc
Q 001371 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIER 434 (1091)
Q Consensus 400 ~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g 434 (1091)
..+++..+.+ .|.-++|+|+||+||||+...|++
T Consensus 133 ~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 133 TSLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 4678888888 789999999999999999998887
No 318
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.34 E-value=0.0052 Score=62.18 Aligned_cols=27 Identities=26% Similarity=0.434 Sum_probs=23.6
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccC
Q 001371 410 SSGTTAALVGQSGSGKSTVISLIERFY 436 (1091)
Q Consensus 410 ~~G~~vaIVG~sGsGKSTLl~ll~g~~ 436 (1091)
.+|.+++|+|++||||||+.+.|...+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999998654
No 319
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.33 E-value=0.0027 Score=65.87 Aligned_cols=89 Identities=17% Similarity=0.209 Sum_probs=51.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhceeEEeccC---ccccccHHHHhc--cCC-C-C
Q 001371 414 TAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEP---VLFTGSIKDNIA--YGK-D-D 486 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~---~Lf~~TIreNI~--~g~-~-~ 486 (1091)
+++|+|++||||||+++.|.+.+.+....+. ++.... .++...+|+.+. ++. + +
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~-------------------~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 62 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVA-------------------TLAFPRYGQSVAADIAAEALHGEHGDLASS 62 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEE-------------------EEESSEEEEEEEEEEHHHHEEEEEEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE-------------------EEeecCCCCcchhhHHHHHHcccccccCCC
Confidence 6899999999999999999998865322322 221111 112445666552 110 1 1
Q ss_pred CCHHHHHHHHHHcccHHHHhhCCCCcccccccCCC
Q 001371 487 ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGT 521 (1091)
Q Consensus 487 ~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~ 521 (1091)
...+.+..++......+.+..++.+.++.|.++..
T Consensus 63 ~~~~~~~~~~~r~~~~~~i~~~l~~g~~vi~D~~~ 97 (214)
T 1gtv_A 63 VYAMATLFALDRAGAVHTIQGLCRGYDVVILDRYV 97 (214)
T ss_dssp HHHHHHHHHHHHHEEHHHHHHEEEEEEEEEEEEEE
T ss_pred HhHHHHHHHHHHhhhHHHHHHHhhCCCEEEECCCc
Confidence 11223333334434466777776666788888764
No 320
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.23 E-value=0.0076 Score=59.97 Aligned_cols=25 Identities=28% Similarity=0.179 Sum_probs=21.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHhccCC
Q 001371 413 TTAALVGQSGSGKSTVISLIERFYD 437 (1091)
Q Consensus 413 ~~vaIVG~sGsGKSTLl~ll~g~~~ 437 (1091)
.+++|+|++||||||+.+.|...+.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3789999999999999999987653
No 321
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.14 E-value=0.035 Score=53.51 Aligned_cols=28 Identities=21% Similarity=0.211 Sum_probs=23.1
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccCC
Q 001371 410 SSGTTAALVGQSGSGKSTVISLIERFYD 437 (1091)
Q Consensus 410 ~~G~~vaIVG~sGsGKSTLl~ll~g~~~ 437 (1091)
+.+.-+.|.||+|+|||++++.|.....
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 3456689999999999999999887643
No 322
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.13 E-value=0.012 Score=60.54 Aligned_cols=27 Identities=30% Similarity=0.244 Sum_probs=24.9
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccC
Q 001371 410 SSGTTAALVGQSGSGKSTVISLIERFY 436 (1091)
Q Consensus 410 ~~G~~vaIVG~sGsGKSTLl~ll~g~~ 436 (1091)
.+|..++|+|++||||||+.+.|...+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999999877
No 323
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.09 E-value=0.0093 Score=60.06 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=21.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcc
Q 001371 413 TTAALVGQSGSGKSTVISLIERF 435 (1091)
Q Consensus 413 ~~vaIVG~sGsGKSTLl~ll~g~ 435 (1091)
-+++|+|++|+|||||++.+.+.
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 37999999999999999999875
No 324
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=95.08 E-value=0.016 Score=64.98 Aligned_cols=36 Identities=28% Similarity=0.513 Sum_probs=30.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhc-----------cCCCCCcEEEECC
Q 001371 412 GTTAALVGQSGSGKSTVISLIER-----------FYDPQAGEVLIDG 447 (1091)
Q Consensus 412 G~~vaIVG~sGsGKSTLl~ll~g-----------~~~~~~G~I~idg 447 (1091)
|-+++|||.+|+|||||++.|.+ -.+|+.|.+.+++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 46799999999999999999998 3467788887766
No 325
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=95.07 E-value=0.0085 Score=74.09 Aligned_cols=43 Identities=9% Similarity=0.074 Sum_probs=36.0
Q ss_pred ceeEEEeeeeeeCCCC--CCCccccccceeeeCCCEEEEEcCCCCCcccc
Q 001371 1040 KGEIELHHVSFKYPSR--PDVQVFRDLNLKIRAGKVSAKLNFQFHSLKQL 1087 (1091)
Q Consensus 1040 ~G~I~f~nVs~~Y~~r--p~~~VLk~is~~I~~Ge~valVG~SG~~~~~~ 1087 (1091)
+|.|++++. |||-- .+.+|++|+||+ |+.++|+||+|||||||
T Consensus 548 ~~~i~i~~~--rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTl 592 (765)
T 1ewq_A 548 GDRLQIRAG--RHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTF 592 (765)
T ss_dssp SSSEEEEEE--CCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHH
T ss_pred CCcEEEEEe--ECceEccCCceEeeeccCC---CcEEEEECCCCCChHHH
Confidence 578999987 77631 234699999999 99999999999999987
No 326
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.07 E-value=0.041 Score=62.00 Aligned_cols=27 Identities=22% Similarity=0.278 Sum_probs=23.9
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccC
Q 001371 410 SSGTTAALVGQSGSGKSTVISLIERFY 436 (1091)
Q Consensus 410 ~~G~~vaIVG~sGsGKSTLl~ll~g~~ 436 (1091)
++..-+.|.||+|+|||+|++.+...+
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 455679999999999999999999876
No 327
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.03 E-value=0.013 Score=67.99 Aligned_cols=34 Identities=6% Similarity=0.091 Sum_probs=27.4
Q ss_pred cccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhc
Q 001371 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIER 434 (1091)
Q Consensus 401 vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g 434 (1091)
-|+.+.--+++|+++.|.|++|+|||||+.-++.
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 3555443588999999999999999999876665
No 328
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.02 E-value=0.012 Score=59.61 Aligned_cols=27 Identities=19% Similarity=0.240 Sum_probs=23.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccCC
Q 001371 411 SGTTAALVGQSGSGKSTVISLIERFYD 437 (1091)
Q Consensus 411 ~G~~vaIVG~sGsGKSTLl~ll~g~~~ 437 (1091)
+|.+++|+|++||||||+.+.|...+.
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 367899999999999999999987653
No 329
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.00 E-value=0.0096 Score=59.20 Aligned_cols=26 Identities=23% Similarity=0.147 Sum_probs=23.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHhccCCC
Q 001371 413 TTAALVGQSGSGKSTVISLIERFYDP 438 (1091)
Q Consensus 413 ~~vaIVG~sGsGKSTLl~ll~g~~~~ 438 (1091)
..++|+|++|||||||+..|++.+..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 47999999999999999999988754
No 330
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.98 E-value=0.082 Score=60.88 Aligned_cols=35 Identities=29% Similarity=0.249 Sum_probs=27.7
Q ss_pred eeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECC
Q 001371 409 ISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG 447 (1091)
Q Consensus 409 i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg 447 (1091)
-++..++.|+|++||||||+.+.|...+ |-..++.
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~----~~~~i~~ 289 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSA----GYVHVNR 289 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGG----TCEECCG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhc----CcEEEcc
Confidence 3567899999999999999999998754 4444443
No 331
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.97 E-value=0.0078 Score=64.92 Aligned_cols=32 Identities=25% Similarity=0.432 Sum_probs=25.0
Q ss_pred cceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccC
Q 001371 403 SGFSISISSGTTAALVGQSGSGKSTVISLIERFY 436 (1091)
Q Consensus 403 ~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~ 436 (1091)
+++....++| +.|.||+|+||||+++++.+..
T Consensus 37 ~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 37 ANLGAKIPKG--VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp HHHSCCCCSC--CCCBCSSCSSHHHHHHHHHHHH
T ss_pred HHCCCCCCce--EEEECCCCCcHHHHHHHHHHHh
Confidence 3444445555 8899999999999999999854
No 332
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.93 E-value=0.013 Score=59.28 Aligned_cols=26 Identities=31% Similarity=0.422 Sum_probs=22.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccC
Q 001371 411 SGTTAALVGQSGSGKSTVISLIERFY 436 (1091)
Q Consensus 411 ~G~~vaIVG~sGsGKSTLl~ll~g~~ 436 (1091)
++..+.|+|++||||||+.+.|...+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998765
No 333
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.83 E-value=0.012 Score=59.84 Aligned_cols=27 Identities=15% Similarity=0.249 Sum_probs=24.1
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccC
Q 001371 410 SSGTTAALVGQSGSGKSTVISLIERFY 436 (1091)
Q Consensus 410 ~~G~~vaIVG~sGsGKSTLl~ll~g~~ 436 (1091)
+++..+.|+|++||||||+.+.|...+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999998755
No 334
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.80 E-value=0.0015 Score=75.22 Aligned_cols=41 Identities=15% Similarity=0.144 Sum_probs=29.1
Q ss_pred EEEeeeeeeCCCCCCCccccccceeeeCCCEEEEEcCCCCCccccc
Q 001371 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKVSAKLNFQFHSLKQLT 1088 (1091)
Q Consensus 1043 I~f~nVs~~Y~~rp~~~VLk~is~~I~~Ge~valVG~SG~~~~~~~ 1088 (1091)
++++|+.+.|. ...+|+++ + .++|+.++++||+|||||||-
T Consensus 144 ~~l~~Lg~~~~---~~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL 184 (418)
T 1p9r_A 144 LDLHSLGMTAH---NHDNFRRL-I-KRPHGIILVTGPTGSGKSTTL 184 (418)
T ss_dssp CCGGGSCCCHH---HHHHHHHH-H-TSSSEEEEEECSTTSCHHHHH
T ss_pred CCHHHcCCCHH---HHHHHHHH-H-HhcCCeEEEECCCCCCHHHHH
Confidence 44555555442 12367777 4 389999999999999999973
No 335
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.78 E-value=0.011 Score=59.62 Aligned_cols=27 Identities=22% Similarity=0.164 Sum_probs=23.9
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccC
Q 001371 410 SSGTTAALVGQSGSGKSTVISLIERFY 436 (1091)
Q Consensus 410 ~~G~~vaIVG~sGsGKSTLl~ll~g~~ 436 (1091)
.++..+.|+|++||||||+.+.|...+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 467889999999999999999998655
No 336
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=94.77 E-value=0.012 Score=74.25 Aligned_cols=49 Identities=8% Similarity=-0.033 Sum_probs=37.9
Q ss_pred ceeEEEeeeeeeCCCC--CCCccccccceeeeCCCEEEEEcCCCCCccccc
Q 001371 1040 KGEIELHHVSFKYPSR--PDVQVFRDLNLKIRAGKVSAKLNFQFHSLKQLT 1088 (1091)
Q Consensus 1040 ~G~I~f~nVs~~Y~~r--p~~~VLk~is~~I~~Ge~valVG~SG~~~~~~~ 1088 (1091)
.+.|++++..--+-.. ....|++|++|++++|+.++|+||+||||||+-
T Consensus 629 ~~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlL 679 (934)
T 3thx_A 629 QGRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYI 679 (934)
T ss_dssp SCEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHH
T ss_pred CcceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHH
Confidence 4678998854333221 123599999999999999999999999999873
No 337
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.74 E-value=0.014 Score=57.96 Aligned_cols=20 Identities=35% Similarity=0.564 Sum_probs=18.7
Q ss_pred CEEEEEcCCCCcHHHHHHHH
Q 001371 413 TTAALVGQSGSGKSTVISLI 432 (1091)
Q Consensus 413 ~~vaIVG~sGsGKSTLl~ll 432 (1091)
.+++|+|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37899999999999999999
No 338
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.68 E-value=0.016 Score=61.21 Aligned_cols=27 Identities=33% Similarity=0.444 Sum_probs=24.5
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccC
Q 001371 410 SSGTTAALVGQSGSGKSTVISLIERFY 436 (1091)
Q Consensus 410 ~~G~~vaIVG~sGsGKSTLl~ll~g~~ 436 (1091)
++|..++|+|++||||||+.+.|.+.+
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999998754
No 339
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.61 E-value=0.014 Score=59.45 Aligned_cols=27 Identities=33% Similarity=0.399 Sum_probs=24.3
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccC
Q 001371 410 SSGTTAALVGQSGSGKSTVISLIERFY 436 (1091)
Q Consensus 410 ~~G~~vaIVG~sGsGKSTLl~ll~g~~ 436 (1091)
+++..++|+|++||||||+.+.|...+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998765
No 340
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.60 E-value=0.013 Score=66.69 Aligned_cols=26 Identities=23% Similarity=0.267 Sum_probs=23.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccC
Q 001371 411 SGTTAALVGQSGSGKSTVISLIERFY 436 (1091)
Q Consensus 411 ~G~~vaIVG~sGsGKSTLl~ll~g~~ 436 (1091)
++..+.|.||+|+||||+++.+.+..
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999999865
No 341
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.59 E-value=0.0035 Score=74.08 Aligned_cols=30 Identities=13% Similarity=-0.071 Sum_probs=28.0
Q ss_pred ccccccceeeeCCCEEEEEcCCCCCccccc
Q 001371 1059 QVFRDLNLKIRAGKVSAKLNFQFHSLKQLT 1088 (1091)
Q Consensus 1059 ~VLk~is~~I~~Ge~valVG~SG~~~~~~~ 1088 (1091)
++++++++.|++|+.++++||+|||||||-
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL 277 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTL 277 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHH
Confidence 488999999999999999999999999873
No 342
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.55 E-value=0.018 Score=59.56 Aligned_cols=29 Identities=24% Similarity=0.192 Sum_probs=25.1
Q ss_pred eeCCCEEEEEcCCCCcHHHHHHHHhccCC
Q 001371 409 ISSGTTAALVGQSGSGKSTVISLIERFYD 437 (1091)
Q Consensus 409 i~~G~~vaIVG~sGsGKSTLl~ll~g~~~ 437 (1091)
.++|.+++|+|++||||||+.+.|...+.
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999999987653
No 343
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.53 E-value=0.16 Score=67.52 Aligned_cols=39 Identities=21% Similarity=0.321 Sum_probs=31.2
Q ss_pred eeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEE-EECC
Q 001371 409 ISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV-LIDG 447 (1091)
Q Consensus 409 i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I-~idg 447 (1091)
+++|+.+.|.||+|+|||||+..+........|.+ .+++
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~ 768 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 768 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECT
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEec
Confidence 89999999999999999999999887765544433 3344
No 344
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.51 E-value=0.019 Score=59.34 Aligned_cols=27 Identities=30% Similarity=0.402 Sum_probs=24.4
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccC
Q 001371 410 SSGTTAALVGQSGSGKSTVISLIERFY 436 (1091)
Q Consensus 410 ~~G~~vaIVG~sGsGKSTLl~ll~g~~ 436 (1091)
++|.+++|+|++||||||+.+.|...+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 478899999999999999999998754
No 345
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.46 E-value=0.015 Score=59.88 Aligned_cols=28 Identities=32% Similarity=0.534 Sum_probs=25.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccCCC
Q 001371 411 SGTTAALVGQSGSGKSTVISLIERFYDP 438 (1091)
Q Consensus 411 ~G~~vaIVG~sGsGKSTLl~ll~g~~~~ 438 (1091)
+|.+++|.|++||||||+.+.|...+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 4678999999999999999999987754
No 346
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=94.38 E-value=0.12 Score=60.08 Aligned_cols=27 Identities=22% Similarity=0.254 Sum_probs=24.5
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccC
Q 001371 410 SSGTTAALVGQSGSGKSTVISLIERFY 436 (1091)
Q Consensus 410 ~~G~~vaIVG~sGsGKSTLl~ll~g~~ 436 (1091)
++..-+.|.||+|+|||+|++++.+..
T Consensus 165 ~~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 165 TPWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 466789999999999999999999876
No 347
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.36 E-value=0.019 Score=59.79 Aligned_cols=24 Identities=42% Similarity=0.432 Sum_probs=21.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhc
Q 001371 411 SGTTAALVGQSGSGKSTVISLIER 434 (1091)
Q Consensus 411 ~G~~vaIVG~sGsGKSTLl~ll~g 434 (1091)
++.+++|+|++||||||+.+.|.+
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999987
No 348
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=94.33 E-value=0.085 Score=59.54 Aligned_cols=26 Identities=19% Similarity=0.388 Sum_probs=22.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCC
Q 001371 414 TAALVGQSGSGKSTVISLIERFYDPQ 439 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g~~~~~ 439 (1091)
.+.|.||.|+||||+++.+.+.....
T Consensus 40 ~~ll~G~~G~GKT~la~~la~~l~~~ 65 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAKGLNCE 65 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHSCT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 58899999999999999999877543
No 349
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.31 E-value=0.0079 Score=61.47 Aligned_cols=29 Identities=24% Similarity=0.373 Sum_probs=25.3
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhccC
Q 001371 408 SISSGTTAALVGQSGSGKSTVISLIERFY 436 (1091)
Q Consensus 408 ~i~~G~~vaIVG~sGsGKSTLl~ll~g~~ 436 (1091)
.++++.+++|+|++||||||+.+.|...+
T Consensus 8 ~~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 8 DLRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 34567899999999999999999998765
No 350
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=94.30 E-value=0.12 Score=60.77 Aligned_cols=28 Identities=18% Similarity=0.299 Sum_probs=24.7
Q ss_pred eeCCCEEEEEcCCCCcHHHHHHHHhccC
Q 001371 409 ISSGTTAALVGQSGSGKSTVISLIERFY 436 (1091)
Q Consensus 409 i~~G~~vaIVG~sGsGKSTLl~ll~g~~ 436 (1091)
+++..-+.|.||+|+|||++++++....
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 5667789999999999999999998765
No 351
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.28 E-value=0.034 Score=57.71 Aligned_cols=43 Identities=14% Similarity=0.207 Sum_probs=25.6
Q ss_pred hhcCCCEEEeeCCCCC-CCH-HhHHHHHHHHHHHcCCCeEEEEcc
Q 001371 537 ILKDPRILLLDEATSA-LDA-ESEKVVQEALDRIMVNRTTVIVAH 579 (1091)
Q Consensus 537 ll~~~~IliLDE~tSa-LD~-~te~~i~~~l~~~~~~~T~I~ItH 579 (1091)
+.++|+++|+||+-.. .+. ..+..++.....+-.+.-++..+|
T Consensus 81 L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~N 125 (228)
T 2r8r_A 81 LKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVN 125 (228)
T ss_dssp HHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEE
T ss_pred HhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEcc
Confidence 4468999999997642 332 233344444433345656777766
No 352
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=94.19 E-value=0.023 Score=64.10 Aligned_cols=59 Identities=17% Similarity=0.262 Sum_probs=41.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhceeEEeccCccccccHHHHhccCCCCCCHHHHH
Q 001371 414 TAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIR 493 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~ 493 (1091)
+++|||++|+|||||+++|.|.. + ++.+++. .|+..|+.+. ..+++++.
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~-~----------~v~~~p~------------------~Ti~pn~g~~--~v~~~~l~ 51 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN-A----------LAANYPF------------------ATIDKNVGVV--PLEDERLY 51 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH-T----------TCSSCCG------------------GGGSTTEEEE--ECCCHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC-C----------cccCCCC------------------ceeccceeeE--ecChHHHH
Confidence 58999999999999999999874 2 1122211 1666676554 25567788
Q ss_pred HHHHHcccHH
Q 001371 494 VATELANAAK 503 (1091)
Q Consensus 494 ~a~~~a~l~~ 503 (1091)
.+++.++.++
T Consensus 52 ~~~~~~~~~~ 61 (368)
T 2dby_A 52 ALQRTFAKGE 61 (368)
T ss_dssp HHHHHHCBTT
T ss_pred HHHHHhcccc
Confidence 8888776654
No 353
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.18 E-value=0.049 Score=54.04 Aligned_cols=25 Identities=20% Similarity=0.401 Sum_probs=22.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcc
Q 001371 411 SGTTAALVGQSGSGKSTVISLIERF 435 (1091)
Q Consensus 411 ~G~~vaIVG~sGsGKSTLl~ll~g~ 435 (1091)
+.-+++|+|++|+|||||++.+.+-
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999874
No 354
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.16 E-value=0.22 Score=57.25 Aligned_cols=30 Identities=20% Similarity=0.319 Sum_probs=26.2
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhccCC
Q 001371 408 SISSGTTAALVGQSGSGKSTVISLIERFYD 437 (1091)
Q Consensus 408 ~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~ 437 (1091)
-+++-.-+.+.||+|+|||+|++++.+...
T Consensus 211 g~~~prGvLL~GPPGtGKTllAkAiA~e~~ 240 (437)
T 4b4t_L 211 GIKPPKGVLLYGPPGTGKTLLAKAVAATIG 240 (437)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 466777899999999999999999998864
No 355
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.15 E-value=0.02 Score=61.30 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 001371 414 TAALVGQSGSGKSTVISLIERFY 436 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g~~ 436 (1091)
.++|+||+|||||||.+.|.+.+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999998865
No 356
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.14 E-value=0.018 Score=57.65 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 001371 414 TAALVGQSGSGKSTVISLIERFY 436 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g~~ 436 (1091)
.++|+|++||||||+.+.|...+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 68999999999999999998765
No 357
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=94.09 E-value=0.0093 Score=74.96 Aligned_cols=46 Identities=13% Similarity=0.094 Sum_probs=37.3
Q ss_pred ceeEEEeeeeeeCCC------CCCCccccccceeeeCCCEEEEEcCCCCCcccc
Q 001371 1040 KGEIELHHVSFKYPS------RPDVQVFRDLNLKIRAGKVSAKLNFQFHSLKQL 1087 (1091)
Q Consensus 1040 ~G~I~f~nVs~~Y~~------rp~~~VLk~is~~I~~Ge~valVG~SG~~~~~~ 1087 (1091)
.+.|++++ .|+|- ..+..|++|+||++++|+.++|+||+|||||||
T Consensus 638 ~~~i~i~~--~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTl 689 (918)
T 3thx_B 638 ERKIVIKN--GRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSY 689 (918)
T ss_dssp SCEEEEEE--ECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHH
T ss_pred CCcEEEEe--ccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHH
Confidence 45788877 56651 123469999999999999999999999999987
No 358
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.08 E-value=0.018 Score=57.83 Aligned_cols=27 Identities=15% Similarity=0.160 Sum_probs=18.9
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccC
Q 001371 410 SSGTTAALVGQSGSGKSTVISLIERFY 436 (1091)
Q Consensus 410 ~~G~~vaIVG~sGsGKSTLl~ll~g~~ 436 (1091)
.++..+.|+|++||||||+.+.|...+
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 357899999999999999999998655
No 359
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.08 E-value=0.099 Score=57.00 Aligned_cols=24 Identities=33% Similarity=0.217 Sum_probs=20.4
Q ss_pred eeCCCEEEEEcCCCCcHHHHHHHHh
Q 001371 409 ISSGTTAALVGQSGSGKSTVISLIE 433 (1091)
Q Consensus 409 i~~G~~vaIVG~sGsGKSTLl~ll~ 433 (1091)
+++| .+-|.||+|||||||+.-++
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~ 49 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMV 49 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHH
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHH
Confidence 6889 99999999999999954433
No 360
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.07 E-value=0.024 Score=56.67 Aligned_cols=31 Identities=29% Similarity=0.228 Sum_probs=24.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEEC
Q 001371 413 TTAALVGQSGSGKSTVISLIERFYDPQAGEVLID 446 (1091)
Q Consensus 413 ~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~id 446 (1091)
.++.|+|++||||||+.+.|... .-|...++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~---~~~~~~i~ 33 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAK---NPGFYNIN 33 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH---STTEEEEC
T ss_pred eEEEEecCCCCCHHHHHHHHHhh---cCCcEEec
Confidence 36899999999999999999872 12545554
No 361
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.06 E-value=0.042 Score=54.04 Aligned_cols=21 Identities=29% Similarity=0.517 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 001371 414 TAALVGQSGSGKSTVISLIER 434 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g 434 (1091)
+++++|++|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999987
No 362
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=94.01 E-value=0.022 Score=58.08 Aligned_cols=22 Identities=41% Similarity=0.588 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 001371 414 TAALVGQSGSGKSTVISLIERF 435 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g~ 435 (1091)
+++|||++|+|||||++.+.+.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7899999999999999999754
No 363
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=93.95 E-value=0.08 Score=58.63 Aligned_cols=44 Identities=18% Similarity=0.308 Sum_probs=28.9
Q ss_pred CCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchh
Q 001371 540 DPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLST 583 (1091)
Q Consensus 540 ~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~ 583 (1091)
+++|+++||+-.--.......+.+.+.+...+..+|++|++...
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~ 148 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDG 148 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGG
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccc
Confidence 78999999984321144455566666655556677778887654
No 364
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=93.94 E-value=0.16 Score=56.04 Aligned_cols=26 Identities=27% Similarity=0.331 Sum_probs=22.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccC
Q 001371 411 SGTTAALVGQSGSGKSTVISLIERFY 436 (1091)
Q Consensus 411 ~G~~vaIVG~sGsGKSTLl~ll~g~~ 436 (1091)
+...+.|.||+|+||||+++.+....
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHh
Confidence 34678999999999999999998764
No 365
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=93.88 E-value=0.076 Score=58.90 Aligned_cols=27 Identities=22% Similarity=0.278 Sum_probs=23.6
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccC
Q 001371 410 SSGTTAALVGQSGSGKSTVISLIERFY 436 (1091)
Q Consensus 410 ~~G~~vaIVG~sGsGKSTLl~ll~g~~ 436 (1091)
.+..-+.|.||+|+|||+|++++....
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 355679999999999999999998874
No 366
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.87 E-value=0.17 Score=55.28 Aligned_cols=31 Identities=29% Similarity=0.205 Sum_probs=24.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEEC
Q 001371 413 TTAALVGQSGSGKSTVISLIERFYDPQAGEVLID 446 (1091)
Q Consensus 413 ~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~id 446 (1091)
..+.|+|++||||||+.+.|...+ .|-..++
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~---~~~~~i~ 33 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKN---PGFYNIN 33 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS---TTEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHhC---CCcEEec
Confidence 478999999999999999998743 2544444
No 367
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.83 E-value=0.028 Score=58.92 Aligned_cols=27 Identities=37% Similarity=0.501 Sum_probs=23.0
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccC
Q 001371 410 SSGTTAALVGQSGSGKSTVISLIERFY 436 (1091)
Q Consensus 410 ~~G~~vaIVG~sGsGKSTLl~ll~g~~ 436 (1091)
.++..++|+|++||||||+.+.|...+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999998765
No 368
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.81 E-value=0.028 Score=58.57 Aligned_cols=27 Identities=26% Similarity=0.465 Sum_probs=23.7
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccC
Q 001371 410 SSGTTAALVGQSGSGKSTVISLIERFY 436 (1091)
Q Consensus 410 ~~G~~vaIVG~sGsGKSTLl~ll~g~~ 436 (1091)
++|..+.|+|+.||||||+.+.|...+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 367899999999999999999998765
No 369
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.74 E-value=0.048 Score=55.90 Aligned_cols=22 Identities=23% Similarity=0.471 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 001371 414 TAALVGQSGSGKSTVISLIERF 435 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g~ 435 (1091)
+++|+|++|+|||||++.+.+-
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999988753
No 370
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=93.74 E-value=0.011 Score=64.19 Aligned_cols=28 Identities=21% Similarity=0.107 Sum_probs=26.0
Q ss_pred ccccccceeeeCCCEEEEEcCCCCCccccc
Q 001371 1059 QVFRDLNLKIRAGKVSAKLNFQFHSLKQLT 1088 (1091)
Q Consensus 1059 ~VLk~is~~I~~Ge~valVG~SG~~~~~~~ 1088 (1091)
.+|+++++++++| ++|+||+|||||+|-
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLA 61 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHH
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHH
Confidence 4899999999999 999999999999874
No 371
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.72 E-value=0.031 Score=54.85 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 001371 414 TAALVGQSGSGKSTVISLIERF 435 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g~ 435 (1091)
+++++|++|+|||||++.+.+-
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 372
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=93.72 E-value=0.2 Score=55.64 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=22.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHhccCC
Q 001371 413 TTAALVGQSGSGKSTVISLIERFYD 437 (1091)
Q Consensus 413 ~~vaIVG~sGsGKSTLl~ll~g~~~ 437 (1091)
..+.|.||+|+||||+++.+.....
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~~ 80 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEMS 80 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999987753
No 373
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.72 E-value=0.033 Score=61.55 Aligned_cols=28 Identities=21% Similarity=0.369 Sum_probs=24.5
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccCC
Q 001371 410 SSGTTAALVGQSGSGKSTVISLIERFYD 437 (1091)
Q Consensus 410 ~~G~~vaIVG~sGsGKSTLl~ll~g~~~ 437 (1091)
+++..++|+||+|||||||...|...+.
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 3567899999999999999999998763
No 374
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.72 E-value=0.03 Score=56.80 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=22.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccC
Q 001371 411 SGTTAALVGQSGSGKSTVISLIERFY 436 (1091)
Q Consensus 411 ~G~~vaIVG~sGsGKSTLl~ll~g~~ 436 (1091)
++..++|+|++||||||+.+.|...+
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998654
No 375
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.71 E-value=0.029 Score=57.48 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=23.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccC
Q 001371 411 SGTTAALVGQSGSGKSTVISLIERFY 436 (1091)
Q Consensus 411 ~G~~vaIVG~sGsGKSTLl~ll~g~~ 436 (1091)
++.+++|+|++||||||+.+.|...+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998765
No 376
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.70 E-value=0.03 Score=56.62 Aligned_cols=24 Identities=33% Similarity=0.580 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCC
Q 001371 414 TAALVGQSGSGKSTVISLIERFYD 437 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g~~~ 437 (1091)
+++|.|++||||||+.+.|...+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999988764
No 377
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=93.69 E-value=0.025 Score=55.08 Aligned_cols=24 Identities=17% Similarity=0.057 Sum_probs=21.7
Q ss_pred cccccceeeeCCCEEEEEcCCCCCccccc
Q 001371 1060 VFRDLNLKIRAGKVSAKLNFQFHSLKQLT 1088 (1091)
Q Consensus 1060 VLk~is~~I~~Ge~valVG~SG~~~~~~~ 1088 (1091)
+|+++ +|+.++|+||+|+|||+|.
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLL 53 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHH
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHH
Confidence 67777 8999999999999999874
No 378
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=93.66 E-value=0.029 Score=60.10 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 001371 414 TAALVGQSGSGKSTVISLIERFY 436 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g~~ 436 (1091)
+++++|++|||||||++.|.|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 79999999999999999999863
No 379
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=93.65 E-value=0.045 Score=53.70 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 001371 414 TAALVGQSGSGKSTVISLIERFY 436 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g~~ 436 (1091)
+++++|++|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 68999999999999999998754
No 380
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=93.64 E-value=0.016 Score=64.21 Aligned_cols=30 Identities=3% Similarity=-0.140 Sum_probs=25.8
Q ss_pred cccccceeeeCCCEEEEEcCCCCCcccccc
Q 001371 1060 VFRDLNLKIRAGKVSAKLNFQFHSLKQLTT 1089 (1091)
Q Consensus 1060 VLk~is~~I~~Ge~valVG~SG~~~~~~~~ 1089 (1091)
++++++|++++|+.++++|++|+||||+..
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~ 123 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLA 123 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHH
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHH
Confidence 567899999999999999999999998753
No 381
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=93.60 E-value=0.03 Score=54.88 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 001371 414 TAALVGQSGSGKSTVISLIERFY 436 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g~~ 436 (1091)
+++++|++|+|||||++.+.+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 68999999999999999998754
No 382
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.58 E-value=0.03 Score=57.43 Aligned_cols=26 Identities=23% Similarity=0.356 Sum_probs=22.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccC
Q 001371 411 SGTTAALVGQSGSGKSTVISLIERFY 436 (1091)
Q Consensus 411 ~G~~vaIVG~sGsGKSTLl~ll~g~~ 436 (1091)
+..+++|+|++||||||+.+.|...+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34579999999999999999998765
No 383
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.55 E-value=0.027 Score=58.78 Aligned_cols=27 Identities=30% Similarity=0.410 Sum_probs=23.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccCC
Q 001371 411 SGTTAALVGQSGSGKSTVISLIERFYD 437 (1091)
Q Consensus 411 ~G~~vaIVG~sGsGKSTLl~ll~g~~~ 437 (1091)
++..+.|+|++||||||+.+.|...+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 457899999999999999999987663
No 384
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.55 E-value=0.035 Score=54.25 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 001371 414 TAALVGQSGSGKSTVISLIERF 435 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g~ 435 (1091)
+++++|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999998853
No 385
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=93.55 E-value=0.021 Score=71.08 Aligned_cols=46 Identities=13% Similarity=0.067 Sum_probs=36.4
Q ss_pred ceeEEEeeeeeeCCCC----CCCccccccceeeeCCCEEEEEcCCCCCccccc
Q 001371 1040 KGEIELHHVSFKYPSR----PDVQVFRDLNLKIRAGKVSAKLNFQFHSLKQLT 1088 (1091)
Q Consensus 1040 ~G~I~f~nVs~~Y~~r----p~~~VLk~is~~I~~Ge~valVG~SG~~~~~~~ 1088 (1091)
++.|++++ .|+|-- .+..|++|++|+ ++|+.++|+||+|||||||-
T Consensus 575 ~~~i~i~~--~rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlL 624 (800)
T 1wb9_A 575 KPGIRITE--GRHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYM 624 (800)
T ss_dssp SSCEEEEE--ECCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEe--ccccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHH
Confidence 35677776 566621 234599999999 99999999999999999873
No 386
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=93.51 E-value=0.037 Score=54.72 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 001371 414 TAALVGQSGSGKSTVISLIERFY 436 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g~~ 436 (1091)
+++|+|++|+|||||++.+.+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 68999999999999999998753
No 387
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.49 E-value=0.035 Score=56.11 Aligned_cols=25 Identities=20% Similarity=0.402 Sum_probs=22.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhccC
Q 001371 412 GTTAALVGQSGSGKSTVISLIERFY 436 (1091)
Q Consensus 412 G~~vaIVG~sGsGKSTLl~ll~g~~ 436 (1091)
.-+++|+|++|+|||||++.|.+..
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3489999999999999999998764
No 388
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.44 E-value=0.037 Score=53.81 Aligned_cols=23 Identities=22% Similarity=0.392 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 001371 414 TAALVGQSGSGKSTVISLIERFY 436 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g~~ 436 (1091)
+++++|++|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998754
No 389
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=93.43 E-value=0.13 Score=64.27 Aligned_cols=23 Identities=17% Similarity=0.381 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 001371 414 TAALVGQSGSGKSTVISLIERFY 436 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g~~ 436 (1091)
.+.++||+|+|||+++++|...+
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999886
No 390
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=93.42 E-value=0.036 Score=62.91 Aligned_cols=30 Identities=30% Similarity=0.556 Sum_probs=25.4
Q ss_pred cceeEEeeCCCEEEEEcCCCCcHHHHHHHHh
Q 001371 403 SGFSISISSGTTAALVGQSGSGKSTVISLIE 433 (1091)
Q Consensus 403 ~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~ 433 (1091)
++..+++.+| +++|+||+|||||||+.+|.
T Consensus 17 ~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 17 VNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred cceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 5666776664 99999999999999999886
No 391
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=93.40 E-value=0.039 Score=54.23 Aligned_cols=23 Identities=39% Similarity=0.538 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 001371 414 TAALVGQSGSGKSTVISLIERFY 436 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g~~ 436 (1091)
+++|+|++|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 58999999999999999998643
No 392
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=93.39 E-value=0.048 Score=55.16 Aligned_cols=22 Identities=36% Similarity=0.643 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 001371 414 TAALVGQSGSGKSTVISLIERF 435 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g~ 435 (1091)
+++|+|++|+|||||++.+.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999874
No 393
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=93.39 E-value=0.036 Score=54.03 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 001371 414 TAALVGQSGSGKSTVISLIERF 435 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g~ 435 (1091)
+++++|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999865
No 394
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=93.37 E-value=0.035 Score=59.95 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 001371 414 TAALVGQSGSGKSTVISLIERFY 436 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g~~ 436 (1091)
+++++|++|||||||++.|.|..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
No 395
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.37 E-value=0.26 Score=56.40 Aligned_cols=30 Identities=20% Similarity=0.366 Sum_probs=25.7
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhccCC
Q 001371 408 SISSGTTAALVGQSGSGKSTVISLIERFYD 437 (1091)
Q Consensus 408 ~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~ 437 (1091)
-+++..-+.+.||+|+|||+|++++.+...
T Consensus 202 g~~~prGiLL~GPPGtGKT~lakAiA~~~~ 231 (428)
T 4b4t_K 202 GIDPPRGVLLYGPPGTGKTMLVKAVANSTK 231 (428)
T ss_dssp CCCCCCEEEEESCTTTTHHHHHHHHHHHHT
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 355666799999999999999999998763
No 396
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=93.36 E-value=0.038 Score=53.99 Aligned_cols=22 Identities=27% Similarity=0.323 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 001371 414 TAALVGQSGSGKSTVISLIERF 435 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g~ 435 (1091)
+++++|++|+|||||++.+.+-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999864
No 397
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=93.36 E-value=0.031 Score=57.94 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 001371 414 TAALVGQSGSGKSTVISLIERFY 436 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g~~ 436 (1091)
+++|+|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999997655
No 398
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=93.36 E-value=0.013 Score=62.56 Aligned_cols=41 Identities=17% Similarity=0.177 Sum_probs=34.5
Q ss_pred EEEeeeeeeCCCCCCCccccccceeeeCCCEEEEEcCCCCCccccc
Q 001371 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKVSAKLNFQFHSLKQLT 1088 (1091)
Q Consensus 1043 I~f~nVs~~Y~~rp~~~VLk~is~~I~~Ge~valVG~SG~~~~~~~ 1088 (1091)
.+++++...|. ++ .+++++++++++| ++|+||+|||||+|.
T Consensus 26 ~~l~~l~~~~~-~~--~~~~~~~~~~~~g--~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 26 EELKEIVEFLK-NP--SRFHEMGARIPKG--VLLVGPPGVGKTHLA 66 (254)
T ss_dssp HHHHHHHHHHH-CH--HHHHHTTCCCCSE--EEEECCTTSSHHHHH
T ss_pred HHHHHHHHHHH-CH--HHHHHcCCCCCCe--EEEECCCCCCHHHHH
Confidence 46778888784 22 4999999999999 999999999999874
No 399
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.35 E-value=0.036 Score=54.41 Aligned_cols=22 Identities=32% Similarity=0.431 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 001371 414 TAALVGQSGSGKSTVISLIERF 435 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g~ 435 (1091)
+++|+|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 400
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.34 E-value=0.036 Score=57.46 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 001371 414 TAALVGQSGSGKSTVISLIERFY 436 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g~~ 436 (1091)
.++|+|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999997765
No 401
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=93.31 E-value=0.04 Score=53.96 Aligned_cols=22 Identities=23% Similarity=0.335 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 001371 414 TAALVGQSGSGKSTVISLIERF 435 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g~ 435 (1091)
+++++|++|+|||||++.+.+-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999863
No 402
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.31 E-value=0.04 Score=54.16 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 001371 414 TAALVGQSGSGKSTVISLIERF 435 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g~ 435 (1091)
+++++|++|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 403
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.29 E-value=0.04 Score=55.97 Aligned_cols=24 Identities=38% Similarity=0.625 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCC
Q 001371 414 TAALVGQSGSGKSTVISLIERFYD 437 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g~~~ 437 (1091)
+++|.|++||||||+.+.|...++
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999987663
No 404
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.28 E-value=0.024 Score=62.35 Aligned_cols=19 Identities=11% Similarity=0.015 Sum_probs=17.6
Q ss_pred CCCEEEEEcCCCCCccccc
Q 001371 1070 AGKVSAKLNFQFHSLKQLT 1088 (1091)
Q Consensus 1070 ~Ge~valVG~SG~~~~~~~ 1088 (1091)
+|+.++||||||||||||.
T Consensus 101 ~g~vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTI 119 (304)
T ss_dssp SSSEEEEECSTTSSHHHHH
T ss_pred CCeEEEEECCCCCcHHHHH
Confidence 6899999999999999975
No 405
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=93.28 E-value=0.035 Score=60.05 Aligned_cols=22 Identities=45% Similarity=0.522 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 001371 414 TAALVGQSGSGKSTVISLIERF 435 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g~ 435 (1091)
+++|||++|+|||||++.|++.
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999998864
No 406
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.27 E-value=0.04 Score=54.01 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 001371 414 TAALVGQSGSGKSTVISLIERF 435 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g~ 435 (1091)
+++++|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999998854
No 407
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=93.25 E-value=0.26 Score=56.17 Aligned_cols=27 Identities=19% Similarity=0.298 Sum_probs=23.9
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccC
Q 001371 410 SSGTTAALVGQSGSGKSTVISLIERFY 436 (1091)
Q Consensus 410 ~~G~~vaIVG~sGsGKSTLl~ll~g~~ 436 (1091)
.++.-+.|.||+|+|||+|++.+....
T Consensus 146 ~~~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 146 APARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 356789999999999999999998774
No 408
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=93.25 E-value=0.041 Score=54.55 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 001371 414 TAALVGQSGSGKSTVISLIERF 435 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g~ 435 (1091)
+++|+|++|+|||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 409
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.22 E-value=0.042 Score=54.68 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 001371 414 TAALVGQSGSGKSTVISLIERFY 436 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g~~ 436 (1091)
+++|+|++|+|||||++.+.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 68999999999999999888643
No 410
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=93.19 E-value=0.066 Score=54.77 Aligned_cols=22 Identities=32% Similarity=0.427 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 001371 414 TAALVGQSGSGKSTVISLIERF 435 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g~ 435 (1091)
+++|+|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 411
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=93.17 E-value=0.015 Score=63.22 Aligned_cols=40 Identities=15% Similarity=0.125 Sum_probs=33.4
Q ss_pred EEeeeeeeCCCCCCCccccccceeeeCCCEEEEEcCCCCCccccc
Q 001371 1044 ELHHVSFKYPSRPDVQVFRDLNLKIRAGKVSAKLNFQFHSLKQLT 1088 (1091)
Q Consensus 1044 ~f~nVs~~Y~~rp~~~VLk~is~~I~~Ge~valVG~SG~~~~~~~ 1088 (1091)
+++++...|. . ..+|+++++++++| ++|+||+|||||+|.
T Consensus 51 ~l~~l~~~~~-~--~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 51 ELKEIVEFLK-N--PSRFHEMGARIPKG--VLLVGPPGVGKTHLA 90 (278)
T ss_dssp HHHHHHHHHH-C--HHHHHHTTCCCCCE--EEEECCTTSSHHHHH
T ss_pred HHHHHHHHHH-C--HHHHHHcCCCCCCe--EEEECCCcChHHHHH
Confidence 5677777774 2 24999999999999 999999999999874
No 412
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.16 E-value=0.095 Score=70.50 Aligned_cols=39 Identities=15% Similarity=0.108 Sum_probs=33.4
Q ss_pred Ccccccee--EEeeCCCEEEEEcCCCCcHHHHHHHHhccCC
Q 001371 399 EQIFSGFS--ISISSGTTAALVGQSGSGKSTVISLIERFYD 437 (1091)
Q Consensus 399 ~~vL~~is--l~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~ 437 (1091)
.+.|+++. .-+++|+.+.++||+|||||||...+.-.--
T Consensus 1066 i~~Ld~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~~ea~ 1106 (2050)
T 3cmu_A 1066 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 1106 (2050)
T ss_dssp CHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cHHHHHHhccCCcCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45788887 5799999999999999999999998885543
No 413
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=93.14 E-value=0.041 Score=54.66 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 001371 414 TAALVGQSGSGKSTVISLIERF 435 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g~ 435 (1091)
+++|+|++|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999875
No 414
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.12 E-value=0.016 Score=63.59 Aligned_cols=40 Identities=10% Similarity=-0.076 Sum_probs=33.2
Q ss_pred EEEeeeeeeCCCCCCCccccccceeeeCCCEEEEEcCCCCCcccccc
Q 001371 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKVSAKLNFQFHSLKQLTT 1089 (1091)
Q Consensus 1043 I~f~nVs~~Y~~rp~~~VLk~is~~I~~Ge~valVG~SG~~~~~~~~ 1089 (1091)
+.++++++.|..+ + ++++|+ +|++++++|++|+||||+..
T Consensus 77 ~~~~~l~~~~~~~---~--~~i~~~--~~~~i~i~g~~G~GKTT~~~ 116 (295)
T 1ls1_A 77 TVYEALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAA 116 (295)
T ss_dssp HHHHHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTTTHHHHHH
T ss_pred HHHHHHHHHHCCC---C--ceeecC--CCeEEEEECCCCCCHHHHHH
Confidence 6778889999532 1 788998 99999999999999999753
No 415
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=93.12 E-value=0.04 Score=55.76 Aligned_cols=24 Identities=33% Similarity=0.343 Sum_probs=21.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcc
Q 001371 412 GTTAALVGQSGSGKSTVISLIERF 435 (1091)
Q Consensus 412 G~~vaIVG~sGsGKSTLl~ll~g~ 435 (1091)
--+++|+|++|+|||||++.|.+.
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999999875
No 416
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=93.12 E-value=0.043 Score=54.56 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 001371 414 TAALVGQSGSGKSTVISLIERF 435 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g~ 435 (1091)
+++|+|++|+|||||++.|.+-
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 417
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.10 E-value=0.04 Score=55.44 Aligned_cols=24 Identities=42% Similarity=0.531 Sum_probs=21.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHhccC
Q 001371 413 TTAALVGQSGSGKSTVISLIERFY 436 (1091)
Q Consensus 413 ~~vaIVG~sGsGKSTLl~ll~g~~ 436 (1091)
.+++|+|++||||||+.+.|...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 469999999999999999998754
No 418
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=93.04 E-value=0.015 Score=65.39 Aligned_cols=30 Identities=13% Similarity=0.030 Sum_probs=25.8
Q ss_pred ccccc-ceeeeCCCEEEEEcCCCCCcccccc
Q 001371 1060 VFRDL-NLKIRAGKVSAKLNFQFHSLKQLTT 1089 (1091)
Q Consensus 1060 VLk~i-s~~I~~Ge~valVG~SG~~~~~~~~ 1089 (1091)
.|+.+ .+.|++|+.++|+||+|||||||..
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~ 149 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAH 149 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHH
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHH
Confidence 55555 5799999999999999999999864
No 419
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.03 E-value=0.046 Score=54.22 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=21.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHhccC
Q 001371 413 TTAALVGQSGSGKSTVISLIERFY 436 (1091)
Q Consensus 413 ~~vaIVG~sGsGKSTLl~ll~g~~ 436 (1091)
.+++|+|++||||||+.+.|...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998754
No 420
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=93.03 E-value=0.037 Score=56.78 Aligned_cols=23 Identities=30% Similarity=0.366 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 001371 414 TAALVGQSGSGKSTVISLIERFY 436 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g~~ 436 (1091)
.++|.|++||||||+.+.|.+.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999998865
No 421
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=93.01 E-value=0.046 Score=53.56 Aligned_cols=21 Identities=29% Similarity=0.488 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 001371 414 TAALVGQSGSGKSTVISLIER 434 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g 434 (1091)
+++++|++|+|||||++.+.+
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999986
No 422
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.00 E-value=0.028 Score=61.36 Aligned_cols=26 Identities=27% Similarity=0.507 Sum_probs=19.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccC
Q 001371 411 SGTTAALVGQSGSGKSTVISLIERFY 436 (1091)
Q Consensus 411 ~G~~vaIVG~sGsGKSTLl~ll~g~~ 436 (1091)
++-+++|.|++||||||+.+.|...+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998754
No 423
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=93.00 E-value=0.043 Score=55.37 Aligned_cols=24 Identities=29% Similarity=0.391 Sum_probs=21.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHhccC
Q 001371 413 TTAALVGQSGSGKSTVISLIERFY 436 (1091)
Q Consensus 413 ~~vaIVG~sGsGKSTLl~ll~g~~ 436 (1091)
-+++|+|++|+|||||++.+++..
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCc
Confidence 379999999999999999998753
No 424
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=92.96 E-value=0.038 Score=58.66 Aligned_cols=26 Identities=23% Similarity=0.279 Sum_probs=23.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccC
Q 001371 411 SGTTAALVGQSGSGKSTVISLIERFY 436 (1091)
Q Consensus 411 ~G~~vaIVG~sGsGKSTLl~ll~g~~ 436 (1091)
++-.++|.|++||||||+.+.|...+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 56689999999999999999998665
No 425
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.92 E-value=0.041 Score=55.61 Aligned_cols=25 Identities=32% Similarity=0.410 Sum_probs=22.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhccC
Q 001371 412 GTTAALVGQSGSGKSTVISLIERFY 436 (1091)
Q Consensus 412 G~~vaIVG~sGsGKSTLl~ll~g~~ 436 (1091)
+..++|+|++||||||+.+.|...+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998754
No 426
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=92.91 E-value=0.066 Score=54.27 Aligned_cols=36 Identities=25% Similarity=0.316 Sum_probs=28.9
Q ss_pred ccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccC
Q 001371 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFY 436 (1091)
Q Consensus 400 ~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~ 436 (1091)
..++..-+.+ .|..++|+||||+|||||...|....
T Consensus 23 ~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 23 RSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp CCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred eeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 3566666665 68899999999999999998887643
No 427
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.90 E-value=0.051 Score=55.36 Aligned_cols=24 Identities=33% Similarity=0.610 Sum_probs=21.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHhccC
Q 001371 413 TTAALVGQSGSGKSTVISLIERFY 436 (1091)
Q Consensus 413 ~~vaIVG~sGsGKSTLl~ll~g~~ 436 (1091)
-.++|+|++||||||+.+.|...+
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 479999999999999999998753
No 428
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=92.90 E-value=0.061 Score=53.98 Aligned_cols=22 Identities=23% Similarity=0.466 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 001371 414 TAALVGQSGSGKSTVISLIERF 435 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g~ 435 (1091)
+++++|++|+|||||++.+.+-
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 429
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=92.87 E-value=0.049 Score=55.23 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 001371 414 TAALVGQSGSGKSTVISLIERF 435 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g~ 435 (1091)
+++|+|++|+|||||++.|++.
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999999975
No 430
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=92.87 E-value=0.05 Score=54.53 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 001371 414 TAALVGQSGSGKSTVISLIERF 435 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g~ 435 (1091)
+++|+|++|+|||||++.|.+-
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999864
No 431
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=92.87 E-value=0.055 Score=53.50 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=21.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhccC
Q 001371 412 GTTAALVGQSGSGKSTVISLIERFY 436 (1091)
Q Consensus 412 G~~vaIVG~sGsGKSTLl~ll~g~~ 436 (1091)
-+.++|.|+.||||||+.+.|...+
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh
Confidence 4789999999999999999998654
No 432
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=92.87 E-value=0.051 Score=54.87 Aligned_cols=25 Identities=24% Similarity=0.165 Sum_probs=22.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCC
Q 001371 414 TAALVGQSGSGKSTVISLIERFYDP 438 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g~~~~ 438 (1091)
+++|+|++|+|||||++.+.|.+..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 6899999999999999999987643
No 433
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=92.86 E-value=0.05 Score=58.74 Aligned_cols=23 Identities=35% Similarity=0.592 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 001371 414 TAALVGQSGSGKSTVISLIERFY 436 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g~~ 436 (1091)
+++++|++|+|||||++.|.|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999853
No 434
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.84 E-value=0.34 Score=55.56 Aligned_cols=31 Identities=19% Similarity=0.309 Sum_probs=26.7
Q ss_pred EEeeCCCEEEEEcCCCCcHHHHHHHHhccCC
Q 001371 407 ISISSGTTAALVGQSGSGKSTVISLIERFYD 437 (1091)
Q Consensus 407 l~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~ 437 (1091)
+-+++..-+.+.||+|+|||+|++++.+...
T Consensus 210 ~g~~~prGvLLyGPPGTGKTllAkAiA~e~~ 240 (434)
T 4b4t_M 210 MGIRAPKGALMYGPPGTGKTLLARACAAQTN 240 (434)
T ss_dssp HCCCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCCCeeEEECcCCCCHHHHHHHHHHHhC
Confidence 3466777899999999999999999999763
No 435
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=92.84 E-value=0.053 Score=59.12 Aligned_cols=25 Identities=20% Similarity=0.372 Sum_probs=22.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhccC
Q 001371 412 GTTAALVGQSGSGKSTVISLIERFY 436 (1091)
Q Consensus 412 G~~vaIVG~sGsGKSTLl~ll~g~~ 436 (1091)
+..++|+||||||||||...|...+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4579999999999999999998765
No 436
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.83 E-value=0.054 Score=53.47 Aligned_cols=23 Identities=48% Similarity=0.453 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 001371 414 TAALVGQSGSGKSTVISLIERFY 436 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g~~ 436 (1091)
.++|+|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998754
No 437
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=92.77 E-value=0.053 Score=52.95 Aligned_cols=21 Identities=24% Similarity=0.455 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 001371 414 TAALVGQSGSGKSTVISLIER 434 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g 434 (1091)
+++++|++|+|||||++.+.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999975
No 438
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.76 E-value=0.33 Score=54.86 Aligned_cols=29 Identities=24% Similarity=0.413 Sum_probs=24.7
Q ss_pred eeCCCEEEEEcCCCCcHHHHHHHHhccCC
Q 001371 409 ISSGTTAALVGQSGSGKSTVISLIERFYD 437 (1091)
Q Consensus 409 i~~G~~vaIVG~sGsGKSTLl~ll~g~~~ 437 (1091)
+++..-+.+.||+|+|||+|++++.+...
T Consensus 179 i~~prGvLL~GPPGTGKTllAkAiA~e~~ 207 (405)
T 4b4t_J 179 IAQPKGVILYGPPGTGKTLLARAVAHHTD 207 (405)
T ss_dssp CCCCCCEEEESCSSSSHHHHHHHHHHHHT
T ss_pred CCCCCceEEeCCCCCCHHHHHHHHHHhhC
Confidence 45555699999999999999999998764
No 439
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=92.75 E-value=0.057 Score=53.54 Aligned_cols=22 Identities=18% Similarity=0.398 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 001371 414 TAALVGQSGSGKSTVISLIERF 435 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g~ 435 (1091)
+++|+|++|+|||||++.+.+-
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999999864
No 440
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.75 E-value=0.054 Score=54.81 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCC
Q 001371 414 TAALVGQSGSGKSTVISLIERFYD 437 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g~~~ 437 (1091)
+++|.|++||||||+.+.|...+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999987663
No 441
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=92.74 E-value=0.049 Score=54.72 Aligned_cols=22 Identities=36% Similarity=0.415 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 001371 414 TAALVGQSGSGKSTVISLIERF 435 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g~ 435 (1091)
+++|+|++|+|||||++.+.+-
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5899999999999999999874
No 442
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=92.73 E-value=0.052 Score=54.57 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 001371 414 TAALVGQSGSGKSTVISLIERF 435 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g~ 435 (1091)
+++|+|++|+|||||++.+.+-
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999863
No 443
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=92.70 E-value=0.051 Score=53.84 Aligned_cols=22 Identities=18% Similarity=0.324 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 001371 414 TAALVGQSGSGKSTVISLIERF 435 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g~ 435 (1091)
+++|+|++|+|||||++.+++-
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999853
No 444
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.69 E-value=0.053 Score=58.14 Aligned_cols=27 Identities=26% Similarity=0.302 Sum_probs=23.1
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccC
Q 001371 410 SSGTTAALVGQSGSGKSTVISLIERFY 436 (1091)
Q Consensus 410 ~~G~~vaIVG~sGsGKSTLl~ll~g~~ 436 (1091)
+++..+.|+|++||||||+.+.|...+
T Consensus 2 ~~~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 2 GDIMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 356789999999999999999998764
No 445
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=92.69 E-value=0.055 Score=53.21 Aligned_cols=22 Identities=23% Similarity=0.502 Sum_probs=20.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHhc
Q 001371 413 TTAALVGQSGSGKSTVISLIER 434 (1091)
Q Consensus 413 ~~vaIVG~sGsGKSTLl~ll~g 434 (1091)
-+++++|++|+|||||++.+.+
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999999975
No 446
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.62 E-value=0.056 Score=53.71 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 001371 414 TAALVGQSGSGKSTVISLIERF 435 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g~ 435 (1091)
+++++|++|+|||||++.+.+-
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999999864
No 447
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.61 E-value=0.052 Score=57.91 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=21.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHhccC
Q 001371 413 TTAALVGQSGSGKSTVISLIERFY 436 (1091)
Q Consensus 413 ~~vaIVG~sGsGKSTLl~ll~g~~ 436 (1091)
-+++|.|++||||||+.+.|...+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 379999999999999999997754
No 448
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=92.60 E-value=0.024 Score=65.08 Aligned_cols=28 Identities=14% Similarity=0.057 Sum_probs=26.1
Q ss_pred ccccceeeeCCCEEEEEcCCCCCccccc
Q 001371 1061 FRDLNLKIRAGKVSAKLNFQFHSLKQLT 1088 (1091)
Q Consensus 1061 Lk~is~~I~~Ge~valVG~SG~~~~~~~ 1088 (1091)
-++|+|+++.|+.|||||++|+|||||-
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL 174 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLL 174 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHH
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHH
Confidence 4799999999999999999999999974
No 449
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=92.58 E-value=0.056 Score=59.33 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 001371 414 TAALVGQSGSGKSTVISLIERF 435 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g~ 435 (1091)
+++|||++|+|||||++.|+|.
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999974
No 450
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=92.56 E-value=0.078 Score=52.81 Aligned_cols=20 Identities=25% Similarity=0.348 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 001371 414 TAALVGQSGSGKSTVISLIE 433 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~ 433 (1091)
+++|+|++|+|||||++.+.
T Consensus 8 ki~~~G~~~~GKSsli~~l~ 27 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFV 27 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 78999999999999999998
No 451
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=92.54 E-value=0.014 Score=64.10 Aligned_cols=23 Identities=9% Similarity=-0.155 Sum_probs=20.4
Q ss_pred eeeeCCCEEEEEcCCCCCccccc
Q 001371 1066 LKIRAGKVSAKLNFQFHSLKQLT 1088 (1091)
Q Consensus 1066 ~~I~~Ge~valVG~SG~~~~~~~ 1088 (1091)
+++.+|+++||+||||+|||||-
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLl 190 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLL 190 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHH
T ss_pred HhhcCCCEEEEECCCCCCHHHHH
Confidence 67788999999999999999874
No 452
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=92.52 E-value=0.052 Score=65.19 Aligned_cols=28 Identities=25% Similarity=0.410 Sum_probs=24.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccCCC
Q 001371 411 SGTTAALVGQSGSGKSTVISLIERFYDP 438 (1091)
Q Consensus 411 ~G~~vaIVG~sGsGKSTLl~ll~g~~~~ 438 (1091)
.+..+.|.|+.|+||||+++.|...+..
T Consensus 203 ~~~~~~I~G~pGTGKTt~i~~l~~~l~~ 230 (574)
T 3e1s_A 203 GHRLVVLTGGPGTGKSTTTKAVADLAES 230 (574)
T ss_dssp TCSEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred hCCEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4689999999999999999999987754
No 453
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=92.51 E-value=0.06 Score=53.54 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 001371 414 TAALVGQSGSGKSTVISLIERF 435 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g~ 435 (1091)
+++|+|++|+|||||++.+.+-
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 454
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=92.47 E-value=0.049 Score=56.62 Aligned_cols=26 Identities=35% Similarity=0.565 Sum_probs=23.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccC
Q 001371 411 SGTTAALVGQSGSGKSTVISLIERFY 436 (1091)
Q Consensus 411 ~G~~vaIVG~sGsGKSTLl~ll~g~~ 436 (1091)
+|..+.|+|+.||||||+.+.|...+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998766
No 455
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=92.45 E-value=0.061 Score=53.27 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 001371 414 TAALVGQSGSGKSTVISLIERF 435 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g~ 435 (1091)
+++|+|++|+|||||++.+.+-
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 456
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=92.45 E-value=0.06 Score=54.17 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 001371 414 TAALVGQSGSGKSTVISLIERF 435 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g~ 435 (1091)
+++++|++|+|||||++.|.+-
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 457
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=92.44 E-value=0.077 Score=53.71 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=20.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHhc
Q 001371 413 TTAALVGQSGSGKSTVISLIER 434 (1091)
Q Consensus 413 ~~vaIVG~sGsGKSTLl~ll~g 434 (1091)
-+++|+|++|+|||||++.+.+
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4789999999999999999986
No 458
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=92.40 E-value=0.059 Score=57.62 Aligned_cols=22 Identities=41% Similarity=0.499 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 001371 414 TAALVGQSGSGKSTVISLIERF 435 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g~ 435 (1091)
+++|+|++|+|||||++.|++.
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999974
No 459
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.39 E-value=0.31 Score=55.91 Aligned_cols=30 Identities=23% Similarity=0.327 Sum_probs=26.3
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhccCC
Q 001371 408 SISSGTTAALVGQSGSGKSTVISLIERFYD 437 (1091)
Q Consensus 408 ~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~ 437 (1091)
-+++-.-+.+.||+|+|||+|++++.+...
T Consensus 239 Gi~pprGILLyGPPGTGKTlLAkAiA~e~~ 268 (467)
T 4b4t_H 239 GIDPPKGILLYGPPGTGKTLCARAVANRTD 268 (467)
T ss_dssp TCCCCSEEEECSCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCCceEeeCCCCCcHHHHHHHHHhccC
Confidence 466777899999999999999999998764
No 460
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=92.35 E-value=0.02 Score=64.12 Aligned_cols=26 Identities=15% Similarity=0.089 Sum_probs=15.4
Q ss_pred ccccceeeeCCCEEEEEcCCCCCcccc
Q 001371 1061 FRDLNLKIRAGKVSAKLNFQFHSLKQL 1087 (1091)
Q Consensus 1061 Lk~is~~I~~Ge~valVG~SG~~~~~~ 1087 (1091)
+++|++. .+|+++||+||||+|||||
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTL 231 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSL 231 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHH
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHH
Confidence 3444443 2566667777777776665
No 461
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.35 E-value=0.06 Score=59.64 Aligned_cols=25 Identities=20% Similarity=0.388 Sum_probs=22.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHhccCC
Q 001371 413 TTAALVGQSGSGKSTVISLIERFYD 437 (1091)
Q Consensus 413 ~~vaIVG~sGsGKSTLl~ll~g~~~ 437 (1091)
..++|+||||||||||...|...+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 3799999999999999999998764
No 462
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=92.34 E-value=0.064 Score=53.57 Aligned_cols=22 Identities=27% Similarity=0.323 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 001371 414 TAALVGQSGSGKSTVISLIERF 435 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g~ 435 (1091)
+++|+|++|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 6999999999999999999853
No 463
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=92.31 E-value=0.079 Score=54.95 Aligned_cols=29 Identities=21% Similarity=0.385 Sum_probs=26.4
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccCCC
Q 001371 410 SSGTTAALVGQSGSGKSTVISLIERFYDP 438 (1091)
Q Consensus 410 ~~G~~vaIVG~sGsGKSTLl~ll~g~~~~ 438 (1091)
++|.++++-|++||||||+++.|...+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 47999999999999999999999988765
No 464
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=92.28 E-value=0.062 Score=53.78 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 001371 414 TAALVGQSGSGKSTVISLIERF 435 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g~ 435 (1091)
+++|+|++|+|||||++.+.+-
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 465
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=92.27 E-value=0.064 Score=56.09 Aligned_cols=28 Identities=21% Similarity=0.331 Sum_probs=22.5
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccCC
Q 001371 410 SSGTTAALVGQSGSGKSTVISLIERFYD 437 (1091)
Q Consensus 410 ~~G~~vaIVG~sGsGKSTLl~ll~g~~~ 437 (1091)
.+|.+++|.|++||||||+++.|...+.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999999987764
No 466
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=92.26 E-value=0.066 Score=53.93 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 001371 414 TAALVGQSGSGKSTVISLIERF 435 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g~ 435 (1091)
+++|+|++|+|||||++.+.+.
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 467
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=92.24 E-value=0.065 Score=59.05 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=21.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcc
Q 001371 413 TTAALVGQSGSGKSTVISLIERF 435 (1091)
Q Consensus 413 ~~vaIVG~sGsGKSTLl~ll~g~ 435 (1091)
-+|||+|++|+|||||++.|+|.
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 38999999999999999999974
No 468
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=92.21 E-value=0.065 Score=54.23 Aligned_cols=22 Identities=27% Similarity=0.528 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 001371 414 TAALVGQSGSGKSTVISLIERF 435 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g~ 435 (1091)
+++|+|++|+|||||++.+.+-
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 469
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=92.19 E-value=0.068 Score=53.34 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 001371 414 TAALVGQSGSGKSTVISLIERF 435 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g~ 435 (1091)
+++|+|++|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999853
No 470
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.19 E-value=0.17 Score=55.65 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHhccC
Q 001371 415 AALVGQSGSGKSTVISLIERFY 436 (1091)
Q Consensus 415 vaIVG~sGsGKSTLl~ll~g~~ 436 (1091)
+.|.||+|+||||+++.+...+
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 8999999999999999998765
No 471
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=92.16 E-value=0.47 Score=49.20 Aligned_cols=51 Identities=20% Similarity=0.193 Sum_probs=38.5
Q ss_pred cCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccC-----------chhhhccCeEEEEe
Q 001371 539 KDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHR-----------LSTVRNADMIAVIH 594 (1091)
Q Consensus 539 ~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHr-----------ls~i~~aD~Iivl~ 594 (1091)
.+.+++++||+-=..| ...+.+.+.+ .++.||+..++ ...+..||.|.-|+
T Consensus 89 ~~~dvViIDEaQF~~~---v~el~~~l~~--~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD---IVEFCEAMAN--AGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT---HHHHHHHHHH--TTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh---HHHHHHHHHh--CCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 6789999999999865 3344455544 57888888888 34577899998885
No 472
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=92.16 E-value=0.069 Score=54.53 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 001371 414 TAALVGQSGSGKSTVISLIERFY 436 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g~~ 436 (1091)
+++|+|++|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 68999999999999999998753
No 473
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=92.12 E-value=0.063 Score=58.30 Aligned_cols=23 Identities=39% Similarity=0.452 Sum_probs=20.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhc
Q 001371 412 GTTAALVGQSGSGKSTVISLIER 434 (1091)
Q Consensus 412 G~~vaIVG~sGsGKSTLl~ll~g 434 (1091)
..+++|+|++||||||+.+.|..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999984
No 474
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=92.11 E-value=0.071 Score=53.66 Aligned_cols=22 Identities=18% Similarity=0.193 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 001371 414 TAALVGQSGSGKSTVISLIERF 435 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g~ 435 (1091)
+++|+|++|+|||||++.+.+-
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999853
No 475
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=92.09 E-value=0.04 Score=63.50 Aligned_cols=40 Identities=20% Similarity=0.323 Sum_probs=31.3
Q ss_pred cccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCc
Q 001371 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG 441 (1091)
Q Consensus 401 vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G 441 (1091)
+++.+ +.+-+|++++|+|++|+|||||++.|.+......|
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~ 180 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHG 180 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTC
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccC
Confidence 34444 66779999999999999999999999876543333
No 476
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=92.09 E-value=0.07 Score=54.38 Aligned_cols=22 Identities=27% Similarity=0.323 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 001371 414 TAALVGQSGSGKSTVISLIERF 435 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g~ 435 (1091)
+++|+|++|+|||||++.+.+-
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999854
No 477
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.06 E-value=0.049 Score=54.37 Aligned_cols=23 Identities=22% Similarity=0.453 Sum_probs=20.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhc
Q 001371 412 GTTAALVGQSGSGKSTVISLIER 434 (1091)
Q Consensus 412 G~~vaIVG~sGsGKSTLl~ll~g 434 (1091)
.-+++|+|++|+|||||++.+.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 44899999999999999998873
No 478
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=92.05 E-value=0.073 Score=53.33 Aligned_cols=25 Identities=16% Similarity=0.287 Sum_probs=21.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcc
Q 001371 411 SGTTAALVGQSGSGKSTVISLIERF 435 (1091)
Q Consensus 411 ~G~~vaIVG~sGsGKSTLl~ll~g~ 435 (1091)
+.=+++++|++|+|||||++.+.+-
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3447999999999999999999863
No 479
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=92.01 E-value=0.07 Score=57.67 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 001371 414 TAALVGQSGSGKSTVISLIERFY 436 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g~~ 436 (1091)
+++++|++|||||||++.|.|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998853
No 480
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.00 E-value=0.07 Score=54.03 Aligned_cols=21 Identities=24% Similarity=0.480 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 001371 414 TAALVGQSGSGKSTVISLIER 434 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g 434 (1091)
+++|+|++|+|||||++.+.+
T Consensus 10 ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHc
Confidence 799999999999999999987
No 481
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=91.97 E-value=0.073 Score=55.59 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=20.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcc
Q 001371 413 TTAALVGQSGSGKSTVISLIERF 435 (1091)
Q Consensus 413 ~~vaIVG~sGsGKSTLl~ll~g~ 435 (1091)
-+++|+|++|+|||||++.+.+.
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37999999999999999999874
No 482
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=91.96 E-value=0.11 Score=53.43 Aligned_cols=22 Identities=23% Similarity=0.466 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 001371 414 TAALVGQSGSGKSTVISLIERF 435 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g~ 435 (1091)
+++|+|++|+|||||++.+.+.
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7999999999999999999875
No 483
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=91.95 E-value=0.075 Score=53.90 Aligned_cols=22 Identities=32% Similarity=0.614 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 001371 414 TAALVGQSGSGKSTVISLIERF 435 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g~ 435 (1091)
+++|||++|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999999864
No 484
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.95 E-value=0.074 Score=54.96 Aligned_cols=24 Identities=21% Similarity=0.433 Sum_probs=21.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHhccC
Q 001371 413 TTAALVGQSGSGKSTVISLIERFY 436 (1091)
Q Consensus 413 ~~vaIVG~sGsGKSTLl~ll~g~~ 436 (1091)
-+++|+|++|+|||||++.|.+..
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999998754
No 485
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=91.94 E-value=0.073 Score=53.86 Aligned_cols=22 Identities=18% Similarity=0.434 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 001371 414 TAALVGQSGSGKSTVISLIERF 435 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g~ 435 (1091)
+++|+|++|+|||||++.|.+-
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999863
No 486
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=91.93 E-value=0.044 Score=56.90 Aligned_cols=25 Identities=32% Similarity=0.417 Sum_probs=22.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhccC
Q 001371 412 GTTAALVGQSGSGKSTVISLIERFY 436 (1091)
Q Consensus 412 G~~vaIVG~sGsGKSTLl~ll~g~~ 436 (1091)
.-+++|+|++|+|||||++.|++.-
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 3479999999999999999998853
No 487
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=91.93 E-value=0.079 Score=54.01 Aligned_cols=22 Identities=18% Similarity=0.276 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 001371 414 TAALVGQSGSGKSTVISLIERF 435 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g~ 435 (1091)
+++|+|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 488
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=91.91 E-value=0.072 Score=54.34 Aligned_cols=23 Identities=13% Similarity=0.186 Sum_probs=20.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcc
Q 001371 413 TTAALVGQSGSGKSTVISLIERF 435 (1091)
Q Consensus 413 ~~vaIVG~sGsGKSTLl~ll~g~ 435 (1091)
=+++|+|++|+|||||++.+.+-
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCcCHHHHHHHHHhC
Confidence 37999999999999999999874
No 489
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=91.91 E-value=0.07 Score=52.65 Aligned_cols=33 Identities=15% Similarity=0.194 Sum_probs=26.1
Q ss_pred cccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhc
Q 001371 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIER 434 (1091)
Q Consensus 401 vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g 434 (1091)
.++..-+.+ .|.-+.|.|+||+||||+...|..
T Consensus 6 ~lHas~v~v-~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 6 TWHANFLVI-DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEESEEEEE-TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 445544444 588999999999999999988876
No 490
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=91.86 E-value=0.021 Score=63.08 Aligned_cols=48 Identities=10% Similarity=0.048 Sum_probs=36.0
Q ss_pred eeEEEeeeeeeCCC--C------CCCccccccceeeeCCC------EEEEEcCCCCCccccc
Q 001371 1041 GEIELHHVSFKYPS--R------PDVQVFRDLNLKIRAGK------VSAKLNFQFHSLKQLT 1088 (1091)
Q Consensus 1041 G~I~f~nVs~~Y~~--r------p~~~VLk~is~~I~~Ge------~valVG~SG~~~~~~~ 1088 (1091)
-.|.+++|.=-|-+ | .+.+.|++++..+..++ .+||+||||||||||.
T Consensus 48 ~~~~~~~v~~~y~pl~rll~~~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 48 EIVSLKEVTEIYLPLSRLLSFYVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTS 109 (321)
T ss_dssp HHHCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHH
Confidence 35777777666621 0 02247888999998887 8999999999999985
No 491
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=91.86 E-value=0.09 Score=52.27 Aligned_cols=24 Identities=17% Similarity=0.166 Sum_probs=21.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcc
Q 001371 412 GTTAALVGQSGSGKSTVISLIERF 435 (1091)
Q Consensus 412 G~~vaIVG~sGsGKSTLl~ll~g~ 435 (1091)
-=+++|+|++|+|||||++.+.+-
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 347999999999999999998853
No 492
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=91.84 E-value=0.043 Score=60.92 Aligned_cols=22 Identities=14% Similarity=-0.038 Sum_probs=19.6
Q ss_pred eeeCCCEEEEEcCCCCCccccc
Q 001371 1067 KIRAGKVSAKLNFQFHSLKQLT 1088 (1091)
Q Consensus 1067 ~I~~Ge~valVG~SG~~~~~~~ 1088 (1091)
..++|+.++|||||||||||+.
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll 146 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTI 146 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHH
Confidence 4578999999999999999974
No 493
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=91.82 E-value=0.078 Score=57.70 Aligned_cols=25 Identities=20% Similarity=0.367 Sum_probs=22.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhccC
Q 001371 412 GTTAALVGQSGSGKSTVISLIERFY 436 (1091)
Q Consensus 412 G~~vaIVG~sGsGKSTLl~ll~g~~ 436 (1091)
...++|+||||||||||...|...+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4578999999999999999998775
No 494
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=91.81 E-value=0.098 Score=52.79 Aligned_cols=22 Identities=32% Similarity=0.427 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 001371 414 TAALVGQSGSGKSTVISLIERF 435 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g~ 435 (1091)
+++|+|++|+|||||++.+.+-
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6999999999999999999864
No 495
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=91.80 E-value=0.08 Score=52.81 Aligned_cols=21 Identities=19% Similarity=0.379 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 001371 414 TAALVGQSGSGKSTVISLIER 434 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g 434 (1091)
+++++|++|+|||||++.+.+
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999875
No 496
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.78 E-value=0.076 Score=53.59 Aligned_cols=23 Identities=17% Similarity=0.231 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 001371 414 TAALVGQSGSGKSTVISLIERFY 436 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g~~ 436 (1091)
+++|+|++|+|||||++.+.+--
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 68999999999999999998643
No 497
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=91.78 E-value=0.081 Score=53.40 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 001371 414 TAALVGQSGSGKSTVISLIERF 435 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g~ 435 (1091)
+++|+|++|+|||||++.+.+-
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 498
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.76 E-value=0.041 Score=56.54 Aligned_cols=34 Identities=12% Similarity=0.211 Sum_probs=23.6
Q ss_pred ccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcc
Q 001371 402 FSGFSISISSGTTAALVGQSGSGKSTVISLIERF 435 (1091)
Q Consensus 402 L~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~ 435 (1091)
..|+.|.-.+--+++|+|++|+|||||++.+.+-
T Consensus 15 ~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 15 TENLYFQSMIRKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp ----CGGGSEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ccccccccccCcEEEEECcCCCCHHHHHHHHhcC
Confidence 3344333333347999999999999999999874
No 499
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=91.75 E-value=0.079 Score=56.84 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 001371 414 TAALVGQSGSGKSTVISLIERF 435 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g~ 435 (1091)
+++++|++|+|||||++.|+|.
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999974
No 500
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=91.72 E-value=0.085 Score=53.56 Aligned_cols=25 Identities=28% Similarity=0.406 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCC
Q 001371 414 TAALVGQSGSGKSTVISLIERFYDP 438 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g~~~~ 438 (1091)
+++++|++|+|||||++.+.+-+.+
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~~ 46 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMSP 46 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCCG
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCC
Confidence 7999999999999999998885543
Done!