BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001373
(1091 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WEO|A Chain A, Solution Structure Of Ring-Finger In The Catalytic
Subunit (Irx3) Of Cellulose Synthase
Length = 93
Score = 122 bits (307), Expect = 7e-28, Method: Composition-based stats.
Identities = 49/67 (73%), Positives = 56/67 (83%)
Query: 31 VKELSGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90
+K L GQ C+ICGD+I +T G+ FVACNEC FP CRPCYEYERREG Q CPQCKTRYKR
Sbjct: 11 LKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70
Query: 91 IKGSPRV 97
++GSPRV
Sbjct: 71 LRGSPRV 77
>pdb|4HG6|A Chain A, Structure Of A Cellulose Synthase - Cellulose
Translocation Intermediate
Length = 802
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 6/110 (5%)
Query: 783 GWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEIL 842
G+ ++TED T ++H GW+S+Y R G P + + Q RWA G +++L
Sbjct: 334 GFAGETITEDAETALEIHSRGWKSLYI--DRAMIAGLQPETFASFIQQRGRWATGMMQML 391
Query: 843 LSRHCPIWYGYGCGLKPLERFSYINSVVYPITSIPLIAYCTLPAICLLTG 892
L ++ G G +R Y+NS+ + + + + P I L G
Sbjct: 392 LLKNPLFRRGLGIA----QRLCYLNSMSFWFFPLVRMMFLVAPLIYLFFG 437
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 59/129 (45%), Gaps = 21/129 (16%)
Query: 535 LVYVSREKRPGFDHHKKAGAMNA-LIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFM 593
+VY +RE+ + H KAG M+A L R+ + ++ D DH + R F+
Sbjct: 214 VVYSTRER----NEHAKAGNMSAALERLKGEL-----VVVFDADHVPSRDFLARTVGYFV 264
Query: 594 MDPTSGKKICYVQFPQRF---DGIDRH----DRYSNRNVVFFDINMKGLDGIQGPIYVGT 646
DP + VQ P F D I R+ DR N +F+ +GLD G + G+
Sbjct: 265 EDP----DLFLVQTPHFFINPDPIQRNLALGDRCPPENEMFYGKIHRGLDRWGGAFFCGS 320
Query: 647 GCVFRRQAL 655
V RR+AL
Sbjct: 321 AAVLRRRAL 329
>pdb|1UR6|B Chain B, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
Length = 52
Score = 37.0 bits (84), Expect = 0.061, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 39 CQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRY 88
C +C + +EI D F C C + +CR C+ R + N CP C+ Y
Sbjct: 3 CPLCMEPLEIDDIN--FFPCT-CGYQICRFCWHRIRTDENGLCPACRKPY 49
>pdb|2CKL|B Chain B, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 165
Score = 33.1 bits (74), Expect = 0.83, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 7/66 (10%)
Query: 23 DEVARVTSVKELSGQI-CQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQAC 81
D + V S + L ++ C IC D ++ T + EC C C R GN+ C
Sbjct: 40 DGLEIVVSPRSLHSELMCPICLDMLKNT------MTTKECLHRFCADCIITALRSGNKEC 93
Query: 82 PQCKTR 87
P C+ +
Sbjct: 94 PTCRKK 99
>pdb|2H0D|B Chain B, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 100
Score = 32.7 bits (73), Expect = 1.1, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 7/66 (10%)
Query: 23 DEVARVTSVKELSGQI-CQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQAC 81
D + V S + L ++ C IC D ++ T + EC C C R GN+ C
Sbjct: 20 DGLEIVVSPRSLHSELMCPICLDMLKNT------MTTKECLHRFCADCIITALRSGNKEC 73
Query: 82 PQCKTR 87
P C+ +
Sbjct: 74 PTCRKK 79
>pdb|3RPG|C Chain C, Bmi1RING1B-Ubch5c Complex Structure
Length = 121
Score = 32.7 bits (73), Expect = 1.3, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 7/66 (10%)
Query: 23 DEVARVTSVKELSGQI-CQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQAC 81
D + V S + L ++ C IC D ++ T + EC C C R GN+ C
Sbjct: 39 DGLEIVVSPRSLHSELMCPICLDMLKNT------MTTKECLHRFCADCIITALRSGNKEC 92
Query: 82 PQCKTR 87
P C+ +
Sbjct: 93 PTCRKK 98
>pdb|3F8U|B Chain B, TapasinERP57 HETERODIMER
pdb|3F8U|D Chain D, TapasinERP57 HETERODIMER
Length = 401
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 376 DPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKK 435
+P +EP LIT TV+ + P +V + D L+F + TSE A P
Sbjct: 144 EPQQEPVLITMATVVLTVLTHTPAPRV--RLGQDALLDLSFAYMPPTSEAASSLAPGPPP 201
Query: 436 FKIE 439
F +E
Sbjct: 202 FGLE 205
>pdb|1E4U|A Chain A, N-Terminal Ring Finger Domain Of Human Not-4
Length = 78
Score = 29.6 bits (65), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 25 VARVTSVKELSGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQC 84
++R KE + C +C + +EI D F C C + +CR C+ R + N CP C
Sbjct: 1 MSRSPDAKEDPVE-CPLCMEPLEIDDIN--FFPCT-CGYQICRFCWHRIRTDENGLCPAC 56
Query: 85 KTRY 88
+ Y
Sbjct: 57 RKPY 60
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.140 0.446
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,427,493
Number of Sequences: 62578
Number of extensions: 1288185
Number of successful extensions: 2613
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2604
Number of HSP's gapped (non-prelim): 14
length of query: 1091
length of database: 14,973,337
effective HSP length: 109
effective length of query: 982
effective length of database: 8,152,335
effective search space: 8005592970
effective search space used: 8005592970
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)