Query 001373
Match_columns 1091
No_of_seqs 417 out of 1860
Neff 5.1
Searched_HMMs 46136
Date Thu Mar 28 23:09:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001373.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001373hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02436 cellulose synthase A 100.0 0E+00 0E+00 2902.9 83.6 1087 1-1091 1-1094(1094)
2 PLN02400 cellulose synthase 100.0 0E+00 0E+00 2890.2 82.0 1068 1-1090 1-1085(1085)
3 PLN02638 cellulose synthase A 100.0 2E-313 5E-318 2780.6 82.9 1052 23-1090 4-1079(1079)
4 PLN02189 cellulose synthase 100.0 8E-305 2E-309 2700.1 83.5 1030 1-1090 1-1040(1040)
5 PLN02915 cellulose synthase A 100.0 1E-302 3E-307 2681.5 78.0 1001 31-1090 10-1044(1044)
6 PLN02195 cellulose synthase A 100.0 7E-285 2E-289 2516.5 78.3 967 33-1090 3-977 (977)
7 PLN02248 cellulose synthase-li 100.0 9E-252 2E-256 2241.3 71.7 951 4-1078 89-1125(1135)
8 PF03552 Cellulose_synt: Cellu 100.0 1E-218 3E-223 1908.7 45.8 712 368-1084 1-720 (720)
9 PLN02190 cellulose synthase-li 100.0 7E-202 1E-206 1769.7 60.1 725 270-1070 7-756 (756)
10 PLN02893 Cellulose synthase-li 100.0 1E-192 2E-197 1699.6 63.3 706 269-1068 9-728 (734)
11 TIGR03030 CelA cellulose synth 100.0 7.6E-66 1.7E-70 629.1 47.8 491 289-1044 57-561 (713)
12 PRK11498 bcsA cellulose syntha 100.0 7.5E-66 1.6E-70 630.1 45.3 472 291-1043 189-673 (852)
13 PF14569 zf-UDP: Zinc-binding 100.0 4E-45 8.8E-50 322.3 4.4 80 28-107 1-80 (80)
14 PRK05454 glucosyltransferase M 100.0 1.8E-35 4E-40 358.7 43.3 354 287-880 40-411 (691)
15 cd04191 Glucan_BSP_ModH Glucan 100.0 1.9E-33 4.1E-38 306.1 22.1 182 533-840 67-253 (254)
16 COG1215 Glycosyltransferases, 100.0 4.4E-30 9.5E-35 294.4 28.6 233 365-844 53-290 (439)
17 PRK14583 hmsR N-glycosyltransf 100.0 2.1E-28 4.5E-33 285.3 32.8 232 363-845 72-307 (444)
18 TIGR03111 glyc2_xrt_Gpos1 puta 100.0 3.8E-27 8.2E-32 274.6 32.3 281 362-896 45-341 (439)
19 PRK11204 N-glycosyltransferase 100.0 1.1E-26 2.3E-31 267.5 33.8 231 362-845 50-286 (420)
20 PRK14716 bacteriophage N4 adso 99.9 6.7E-25 1.4E-29 259.0 30.9 265 364-870 64-355 (504)
21 PRK11234 nfrB bacteriophage N4 99.9 4.7E-24 1E-28 260.8 28.2 170 549-843 132-334 (727)
22 cd06421 CESA_CelA_like CESA_Ce 99.9 1.5E-24 3.4E-29 226.4 20.2 229 366-842 1-234 (234)
23 cd06437 CESA_CaSu_A2 Cellulose 99.9 5.6E-24 1.2E-28 224.5 21.5 228 366-838 1-232 (232)
24 cd06427 CESA_like_2 CESA_like_ 99.9 7.2E-23 1.6E-27 218.2 20.6 232 366-844 1-236 (241)
25 cd06435 CESA_NdvC_like NdvC_li 99.9 1.2E-22 2.7E-27 213.9 22.0 174 534-844 57-234 (236)
26 PF13641 Glyco_tranf_2_3: Glyc 99.9 1E-22 2.2E-27 213.0 8.7 224 366-837 1-228 (228)
27 PRK15489 nfrB bacteriophage N4 99.8 1.3E-18 2.8E-23 211.5 30.2 171 548-842 139-341 (703)
28 TIGR03472 HpnI hopanoid biosyn 99.8 5.4E-19 1.2E-23 202.1 24.6 235 363-838 38-272 (373)
29 cd04190 Chitin_synth_C C-termi 99.8 1.8E-20 3.9E-25 201.6 11.6 52 787-840 190-243 (244)
30 cd04192 GT_2_like_e Subfamily 99.8 6.8E-19 1.5E-23 182.7 17.7 226 370-837 1-229 (229)
31 cd02520 Glucosylceramide_synth 99.8 1.3E-18 2.8E-23 180.1 16.7 194 366-836 1-194 (196)
32 cd06434 GT2_HAS Hyaluronan syn 99.8 2.3E-17 5E-22 173.2 18.4 59 548-615 62-120 (235)
33 COG2943 MdoH Membrane glycosyl 99.7 1.1E-14 2.3E-19 167.3 38.6 214 534-882 213-433 (736)
34 cd06439 CESA_like_1 CESA_like_ 99.7 8.9E-17 1.9E-21 171.0 19.9 127 362-614 25-151 (251)
35 TIGR03469 HonB hopene-associat 99.7 6.1E-16 1.3E-20 177.9 24.9 133 362-608 36-169 (384)
36 cd02525 Succinoglycan_BP_ExoA 99.6 7.4E-15 1.6E-19 154.5 19.8 54 789-844 180-233 (249)
37 PF13632 Glyco_trans_2_3: Glyc 99.6 2.6E-15 5.7E-20 154.4 14.3 138 570-838 1-143 (193)
38 cd06436 GlcNAc-1-P_transferase 99.5 1.3E-13 2.9E-18 142.8 13.5 115 534-655 51-175 (191)
39 cd06438 EpsO_like EpsO protein 99.4 2E-12 4.4E-17 132.3 11.7 102 548-655 61-167 (183)
40 cd04184 GT2_RfbC_Mx_like Myxoc 99.4 1.4E-11 3E-16 126.5 15.9 121 366-610 1-122 (202)
41 cd04195 GT2_AmsE_like GT2_AmsE 99.3 5.5E-11 1.2E-15 122.1 16.9 66 535-614 57-123 (201)
42 PF13506 Glyco_transf_21: Glyc 99.2 5.3E-11 1.1E-15 123.7 10.4 61 547-615 14-74 (175)
43 cd06433 GT_2_WfgS_like WfgS an 99.2 6.6E-10 1.4E-14 112.4 15.9 55 550-613 62-117 (202)
44 cd04196 GT_2_like_d Subfamily 99.1 2E-09 4.3E-14 110.9 15.3 65 535-613 56-121 (214)
45 cd02522 GT_2_like_a GT_2_like_ 99.1 4.2E-09 9E-14 109.7 17.3 40 368-413 1-40 (221)
46 cd02510 pp-GalNAc-T pp-GalNAc- 99.1 5.9E-09 1.3E-13 115.5 19.5 109 370-595 2-110 (299)
47 PF14570 zf-RING_4: RING/Ubox 99.1 7.1E-11 1.5E-15 97.8 2.8 48 39-89 1-48 (48)
48 cd06420 GT2_Chondriotin_Pol_N 99.0 5.9E-09 1.3E-13 105.3 16.6 42 549-596 65-106 (182)
49 cd04186 GT_2_like_c Subfamily 99.0 6.4E-09 1.4E-13 102.2 15.0 51 549-608 60-111 (166)
50 PF03142 Chitin_synth_2: Chiti 99.0 1.3E-07 2.7E-12 113.2 25.8 53 788-842 324-378 (527)
51 PLN02726 dolichyl-phosphate be 98.9 2.4E-08 5.2E-13 107.4 17.5 60 535-608 70-129 (243)
52 cd06913 beta3GnTL1_like Beta 1 98.9 2E-08 4.3E-13 105.6 15.7 41 370-415 1-41 (219)
53 cd06423 CESA_like CESA_like is 98.9 1.8E-08 3.9E-13 97.8 14.0 63 535-611 55-118 (180)
54 cd04185 GT_2_like_b Subfamily 98.9 3.1E-08 6.8E-13 102.3 16.5 66 535-612 53-118 (202)
55 cd02526 GT2_RfbF_like RfbF is 98.9 1.3E-08 2.8E-13 107.3 13.1 67 534-612 48-118 (237)
56 PF00535 Glycos_transf_2: Glyc 98.9 3.8E-09 8.3E-14 102.8 6.6 110 534-655 54-165 (169)
57 cd06442 DPM1_like DPM1_like re 98.8 5.4E-08 1.2E-12 101.5 15.3 60 535-608 55-114 (224)
58 PRK10073 putative glycosyl tra 98.6 9.1E-07 2E-11 100.6 16.4 110 364-596 4-113 (328)
59 cd04188 DPG_synthase DPG_synth 98.6 6.9E-07 1.5E-11 93.4 14.2 52 550-610 69-120 (211)
60 cd04179 DPM_DPG-synthase_like 98.5 7.3E-07 1.6E-11 90.2 12.0 65 535-613 56-120 (185)
61 TIGR01556 rhamnosyltran L-rham 98.5 2.4E-06 5.1E-11 93.9 16.6 69 534-612 46-114 (281)
62 PRK10018 putative glycosyl tra 98.5 2.9E-06 6.4E-11 94.7 16.0 52 534-595 61-112 (279)
63 PRK10063 putative glycosyl tra 98.4 7.9E-06 1.7E-10 89.4 17.6 47 366-416 1-48 (248)
64 cd00761 Glyco_tranf_GTA_type G 98.3 1E-05 2.2E-10 76.6 13.5 52 548-608 62-114 (156)
65 cd04187 DPM1_like_bac Bacteria 98.3 6.1E-06 1.3E-10 84.0 11.4 104 534-656 56-160 (181)
66 PF10111 Glyco_tranf_2_2: Glyc 98.2 2.8E-05 6E-10 86.5 17.0 63 549-617 74-136 (281)
67 KOG2571 Chitin synthase/hyalur 98.1 4.3E-05 9.3E-10 95.2 16.7 49 788-838 549-597 (862)
68 PTZ00260 dolichyl-phosphate be 98.1 5.6E-05 1.2E-09 86.5 16.1 42 549-595 148-189 (333)
69 COG1216 Predicted glycosyltran 98.1 0.00012 2.7E-09 82.1 17.3 69 533-613 56-126 (305)
70 PRK13915 putative glucosyl-3-p 97.9 4.9E-05 1.1E-09 86.0 11.1 51 549-607 101-152 (306)
71 PRK10714 undecaprenyl phosphat 97.2 0.0025 5.5E-08 72.8 12.0 41 549-594 76-116 (325)
72 KOG2547 Ceramide glucosyltrans 96.9 0.013 2.9E-07 67.3 14.0 159 548-836 155-314 (431)
73 COG5175 MOT2 Transcriptional r 96.9 0.0005 1.1E-08 77.0 2.2 48 38-88 16-63 (480)
74 cd02511 Beta4Glucosyltransfera 96.7 0.01 2.2E-07 63.6 10.9 42 550-596 58-99 (229)
75 COG0463 WcaA Glycosyltransfera 96.7 0.012 2.5E-07 56.7 9.9 45 365-415 2-46 (291)
76 TIGR00570 cdk7 CDK-activating 95.5 0.014 2.9E-07 66.3 4.5 59 35-95 2-60 (309)
77 PF14446 Prok-RING_1: Prokaryo 95.2 0.011 2.3E-07 51.0 1.9 45 36-88 5-51 (54)
78 PF02364 Glucan_synthase: 1,3- 95.2 0.23 5E-06 62.8 14.1 73 788-866 409-482 (817)
79 cd02514 GT13_GLCNAC-TI GT13_GL 94.8 0.35 7.6E-06 56.1 13.1 41 369-413 3-43 (334)
80 PF05290 Baculo_IE-1: Baculovi 88.6 0.28 6.1E-06 49.5 2.3 52 37-92 81-135 (140)
81 cd00162 RING RING-finger (Real 88.5 0.42 9.1E-06 37.4 2.8 44 38-87 1-44 (45)
82 KOG2978 Dolichol-phosphate man 87.0 3.3 7.1E-05 44.6 9.0 53 534-596 64-116 (238)
83 smart00504 Ubox Modified RING 79.7 1.9 4E-05 37.2 3.1 43 38-88 3-45 (63)
84 PRK14559 putative protein seri 76.4 1 2.3E-05 56.4 0.9 24 66-90 30-53 (645)
85 PHA02862 5L protein; Provision 76.2 1.6 3.4E-05 45.0 1.9 50 36-91 2-55 (156)
86 PHA02929 N1R/p28-like protein; 73.0 3.8 8.2E-05 45.6 4.1 55 34-89 172-227 (238)
87 KOG0823 Predicted E3 ubiquitin 72.8 2.9 6.3E-05 46.0 3.1 45 36-88 47-94 (230)
88 KOG0916 1,3-beta-glucan syntha 72.3 39 0.00085 45.7 13.1 82 788-875 1173-1256(1679)
89 PLN03208 E3 ubiquitin-protein 71.7 3.4 7.4E-05 44.6 3.2 54 30-90 12-80 (193)
90 PF13639 zf-RING_2: Ring finge 71.6 2.5 5.5E-05 34.3 1.7 43 38-85 2-44 (44)
91 smart00659 RPOLCX RNA polymera 71.2 2.3 5.1E-05 35.4 1.5 27 37-65 3-29 (44)
92 PF03604 DNA_RNApol_7kD: DNA d 70.9 2.9 6.3E-05 32.7 1.8 26 38-65 2-27 (32)
93 PF14447 Prok-RING_4: Prokaryo 69.7 1.9 4.1E-05 37.6 0.6 46 36-91 7-52 (55)
94 KOG2977 Glycosyltransferase [G 69.2 25 0.00055 40.3 9.3 60 367-437 68-130 (323)
95 PHA02825 LAP/PHD finger-like p 69.2 3.8 8.3E-05 42.9 2.8 51 35-91 7-61 (162)
96 KOG2932 E3 ubiquitin ligase in 65.5 3.1 6.7E-05 47.4 1.4 45 49-93 84-138 (389)
97 smart00184 RING Ring finger. E 64.7 5.9 0.00013 29.6 2.4 39 39-84 1-39 (39)
98 KOG2068 MOT2 transcription fac 64.1 4.9 0.00011 46.4 2.7 52 36-91 249-300 (327)
99 KOG3800 Predicted E3 ubiquitin 62.5 5.4 0.00012 45.3 2.6 53 37-91 1-53 (300)
100 KOG3737 Predicted polypeptide 60.3 30 0.00066 41.0 8.0 47 361-410 150-196 (603)
101 KOG0006 E3 ubiquitin-protein l 59.8 6.8 0.00015 44.8 2.7 63 31-94 310-413 (446)
102 PF03966 Trm112p: Trm112p-like 59.3 1.2 2.7E-05 39.8 -2.5 26 67-92 42-67 (68)
103 PF13712 Glyco_tranf_2_5: Glyc 59.2 32 0.00069 37.6 7.7 49 549-605 40-89 (217)
104 PRK00420 hypothetical protein; 57.0 4.2 9E-05 40.4 0.5 29 56-90 24-52 (112)
105 PF00097 zf-C3HC4: Zinc finger 55.2 8.2 0.00018 30.6 1.8 40 39-84 1-41 (41)
106 PF13923 zf-C3HC4_2: Zinc fing 53.3 10 0.00022 30.2 2.0 39 39-84 1-39 (39)
107 PRK15103 paraquat-inducible me 53.2 10 0.00022 45.6 2.9 31 53-92 219-249 (419)
108 PF14471 DUF4428: Domain of un 53.2 7.3 0.00016 33.5 1.3 28 38-71 1-28 (51)
109 COG5114 Histone acetyltransfer 52.4 4.5 9.8E-05 46.2 -0.1 36 38-77 7-43 (432)
110 PRK12495 hypothetical protein; 51.0 8.3 0.00018 42.4 1.6 30 54-90 41-70 (226)
111 PF02318 FYVE_2: FYVE-type zin 50.2 1.6 3.4E-05 43.3 -3.7 48 34-84 52-100 (118)
112 COG4858 Uncharacterized membra 49.7 69 0.0015 34.8 8.0 61 993-1053 99-162 (226)
113 PF07282 OrfB_Zn_ribbon: Putat 49.6 10 0.00022 33.7 1.7 33 35-68 27-59 (69)
114 PF13920 zf-C3HC4_3: Zinc fing 49.6 10 0.00022 31.7 1.6 46 37-90 3-49 (50)
115 PRK04023 DNA polymerase II lar 48.4 12 0.00025 48.9 2.5 45 34-89 624-674 (1121)
116 smart00291 ZnF_ZZ Zinc-binding 48.2 12 0.00025 30.9 1.7 37 36-77 4-41 (44)
117 TIGR00155 pqiA_fam integral me 47.2 11 0.00025 44.9 2.1 30 54-91 214-243 (403)
118 PHA02926 zinc finger-like prot 47.1 21 0.00045 39.5 3.9 61 34-94 168-235 (242)
119 KOG1941 Acetylcholine receptor 46.4 7.1 0.00015 45.8 0.3 69 35-106 364-438 (518)
120 smart00249 PHD PHD zinc finger 46.2 8.3 0.00018 30.4 0.6 31 38-72 1-31 (47)
121 PRK00398 rpoP DNA-directed RNA 45.7 12 0.00027 31.0 1.5 28 37-65 4-31 (46)
122 PF11077 DUF2616: Protein of u 45.6 7.2 0.00016 41.5 0.1 35 39-78 55-104 (173)
123 KOG0457 Histone acetyltransfer 45.5 8.7 0.00019 45.8 0.8 58 36-100 14-74 (438)
124 PRK12380 hydrogenase nickel in 43.7 6.6 0.00014 38.9 -0.5 27 55-88 70-96 (113)
125 PF07851 TMPIT: TMPIT-like pro 43.0 6.4E+02 0.014 29.9 15.4 19 923-941 173-191 (330)
126 PRK07220 DNA topoisomerase I; 40.4 12 0.00025 48.2 0.8 48 37-86 590-643 (740)
127 COG0551 TopA Zn-finger domain 39.9 15 0.00033 37.2 1.5 49 34-86 15-68 (140)
128 cd02335 ZZ_ADA2 Zinc finger, Z 39.1 21 0.00046 30.2 1.9 30 38-71 2-32 (49)
129 PRK00564 hypA hydrogenase nick 39.0 9.4 0.0002 38.0 -0.2 29 56-91 72-101 (117)
130 cd02249 ZZ Zinc finger, ZZ typ 38.9 21 0.00045 29.7 1.8 30 38-72 2-32 (46)
131 TIGR00599 rad18 DNA repair pro 38.5 24 0.00053 42.2 3.0 53 29-89 18-71 (397)
132 KOG2068 MOT2 transcription fac 38.2 12 0.00026 43.4 0.4 31 62-92 1-33 (327)
133 COG4739 Uncharacterized protei 38.0 19 0.00041 37.4 1.7 45 45-89 77-121 (182)
134 PF03884 DUF329: Domain of unk 37.8 19 0.00041 31.9 1.5 33 75-107 15-53 (57)
135 PF01155 HypA: Hydrogenase exp 37.6 4.2 9.2E-05 40.1 -2.9 13 79-91 87-99 (113)
136 TIGR02443 conserved hypothetic 37.3 18 0.00039 32.2 1.2 31 34-64 7-40 (59)
137 PF11238 DUF3039: Protein of u 36.8 12 0.00027 33.0 0.2 12 79-90 45-56 (58)
138 COG0068 HypF Hydrogenase matur 35.2 29 0.00063 44.0 3.0 55 34-88 99-183 (750)
139 PF06906 DUF1272: Protein of u 35.2 33 0.00072 30.3 2.5 47 38-90 7-53 (57)
140 PF09484 Cas_TM1802: CRISPR-as 34.9 20 0.00044 44.8 1.7 44 33-77 195-254 (593)
141 PRK03681 hypA hydrogenase nick 34.6 12 0.00025 37.2 -0.3 29 56-91 71-100 (114)
142 KOG3736 Polypeptide N-acetylga 34.4 47 0.001 41.6 4.7 49 362-413 138-186 (578)
143 PF07649 C1_3: C1-like domain; 34.3 19 0.00041 27.3 0.8 28 38-69 2-29 (30)
144 cd00350 rubredoxin_like Rubred 34.2 10 0.00022 29.5 -0.6 14 76-89 15-28 (33)
145 TIGR00100 hypA hydrogenase nic 33.9 13 0.00029 36.8 -0.0 29 56-91 71-99 (115)
146 COG2191 Formylmethanofuran deh 33.7 22 0.00047 38.8 1.5 26 36-71 172-201 (206)
147 PF14634 zf-RING_5: zinc-RING 33.4 35 0.00076 27.9 2.3 43 39-86 2-44 (44)
148 KOG2792 Putative cytochrome C 32.9 34 0.00073 38.8 2.8 41 348-389 158-198 (280)
149 COG4818 Predicted membrane pro 32.9 4.3E+02 0.0093 26.1 9.6 26 941-966 5-30 (105)
150 KOG0311 Predicted E3 ubiquitin 32.2 13 0.00028 43.4 -0.5 45 38-88 45-89 (381)
151 COG4707 Uncharacterized protei 32.2 19 0.00041 34.9 0.6 43 470-523 20-69 (107)
152 cd00730 rubredoxin Rubredoxin; 32.2 11 0.00024 32.4 -0.9 7 80-86 36-42 (50)
153 PRK11827 hypothetical protein; 31.8 27 0.0006 31.2 1.5 32 64-95 12-43 (60)
154 COG1996 RPC10 DNA-directed RNA 30.9 23 0.0005 30.5 0.9 29 36-65 6-34 (49)
155 PF00265 TK: Thymidine kinase; 30.7 19 0.00042 38.2 0.5 34 37-70 138-176 (176)
156 PRK14873 primosome assembly pr 30.5 31 0.00067 43.9 2.3 10 78-87 422-431 (665)
157 PRK14973 DNA topoisomerase I; 30.5 26 0.00057 46.2 1.8 47 37-86 589-643 (936)
158 TIGR01562 FdhE formate dehydro 30.3 34 0.00073 39.7 2.3 44 35-87 183-233 (305)
159 TIGR02460 osmo_MPGsynth mannos 30.1 1.4E+02 0.003 35.4 7.1 41 547-590 140-180 (381)
160 PRK07219 DNA topoisomerase I; 30.0 24 0.00053 45.9 1.3 53 36-91 688-746 (822)
161 PF00628 PHD: PHD-finger; Int 28.9 34 0.00074 28.4 1.6 45 38-86 1-50 (51)
162 PRK11595 DNA utilization prote 28.4 32 0.0007 37.7 1.7 39 36-87 5-43 (227)
163 PRK04296 thymidine kinase; Pro 28.4 26 0.00056 37.2 1.0 35 37-71 141-186 (190)
164 PRK14890 putative Zn-ribbon RN 28.4 60 0.0013 29.0 3.0 49 36-86 7-56 (59)
165 PF14446 Prok-RING_1: Prokaryo 28.1 21 0.00047 31.2 0.2 16 75-90 18-33 (54)
166 COG4393 Predicted membrane pro 28.1 1.1E+03 0.024 28.2 15.8 23 1048-1070 196-218 (405)
167 PRK15103 paraquat-inducible me 28.0 29 0.00064 41.7 1.4 33 56-92 11-44 (419)
168 TIGR00155 pqiA_fam integral me 27.8 34 0.00073 41.0 1.9 35 54-92 12-47 (403)
169 PRK14503 mannosyl-3-phosphogly 27.4 1.3E+02 0.0029 35.7 6.4 42 547-591 141-182 (393)
170 KOG3507 DNA-directed RNA polym 26.9 25 0.00054 31.3 0.4 28 36-65 20-47 (62)
171 COG4391 Uncharacterized protei 26.9 22 0.00049 31.8 0.2 17 74-90 44-60 (62)
172 TIGR01206 lysW lysine biosynth 26.2 40 0.00086 29.5 1.5 12 38-49 4-15 (54)
173 KOG2824 Glutaredoxin-related p 25.8 34 0.00074 38.9 1.4 22 33-62 226-247 (281)
174 TIGR00595 priA primosomal prot 25.8 29 0.00063 42.7 0.9 52 48-99 205-261 (505)
175 PF11781 RRN7: RNA polymerase 25.7 34 0.00074 27.4 1.0 23 39-63 11-33 (36)
176 PRK03824 hypA hydrogenase nick 25.5 18 0.00039 36.9 -0.8 11 77-87 106-116 (135)
177 PF13240 zinc_ribbon_2: zinc-r 25.4 15 0.00033 26.6 -1.0 13 75-87 10-22 (23)
178 PF13248 zf-ribbon_3: zinc-rib 25.3 16 0.00035 26.9 -0.8 14 74-87 12-25 (26)
179 PRK06319 DNA topoisomerase I/S 25.2 34 0.00074 44.8 1.4 56 35-93 591-660 (860)
180 PF08274 PhnA_Zn_Ribbon: PhnA 24.6 26 0.00056 27.2 0.1 24 38-63 4-27 (30)
181 KOG2857 Predicted MYND Zn-fing 24.2 39 0.00083 35.0 1.2 45 36-92 5-50 (157)
182 smart00744 RINGv The RING-vari 24.2 86 0.0019 26.6 3.2 45 38-85 1-49 (49)
183 PF09526 DUF2387: Probable met 24.1 41 0.00088 31.0 1.3 31 34-64 6-39 (71)
184 PF13719 zinc_ribbon_5: zinc-r 24.0 31 0.00067 27.6 0.5 11 80-90 4-14 (37)
185 PF13896 Glyco_transf_49: Glyc 23.9 83 0.0018 36.5 4.1 39 566-605 126-164 (317)
186 TIGR02556 cas_TM1802 CRISPR-as 23.8 48 0.001 41.4 2.3 41 36-77 170-222 (555)
187 COG1499 NMD3 NMD protein affec 23.7 41 0.00089 39.8 1.6 49 34-98 4-60 (355)
188 KOG1609 Protein involved in mR 23.6 45 0.00097 37.6 1.8 58 36-94 78-139 (323)
189 PTZ00293 thymidine kinase; Pro 23.4 35 0.00075 37.6 0.8 35 37-71 138-177 (211)
190 PF13717 zinc_ribbon_4: zinc-r 23.2 33 0.00071 27.4 0.4 11 80-90 4-14 (36)
191 KOG2177 Predicted E3 ubiquitin 23.1 42 0.00091 36.0 1.4 42 36-85 13-54 (386)
192 PRK08359 transcription factor; 22.9 25 0.00055 37.6 -0.3 30 37-74 7-42 (176)
193 PRK14714 DNA polymerase II lar 22.1 39 0.00084 45.5 1.0 48 37-91 668-722 (1337)
194 cd02336 ZZ_RSC8 Zinc finger, Z 22.1 46 0.001 28.0 1.1 34 38-76 2-36 (45)
195 TIGR00143 hypF [NiFe] hydrogen 21.8 44 0.00095 43.0 1.4 58 34-91 66-153 (711)
196 PF04641 Rtf2: Rtf2 RING-finge 21.7 61 0.0013 36.5 2.3 51 34-90 111-162 (260)
197 KOG2568 Predicted membrane pro 21.5 1.7E+03 0.037 28.1 15.7 71 997-1067 314-400 (518)
198 PF03107 C1_2: C1 domain; Int 21.4 50 0.0011 25.2 1.1 28 38-69 2-29 (30)
199 cd03031 GRX_GRX_like Glutaredo 21.1 32 0.0007 35.7 0.0 43 35-86 98-141 (147)
200 COG2888 Predicted Zn-ribbon RN 21.0 80 0.0017 28.3 2.4 48 36-85 9-57 (61)
201 PF07754 DUF1610: Domain of un 20.8 70 0.0015 23.8 1.7 24 39-63 1-24 (24)
202 COG3357 Predicted transcriptio 20.1 33 0.00071 33.1 -0.1 10 79-88 77-86 (97)
203 TIGR03830 CxxCG_CxxCG_HTH puta 20.0 33 0.00072 33.6 -0.1 40 39-88 1-41 (127)
204 PF12773 DZR: Double zinc ribb 20.0 63 0.0014 26.9 1.5 12 36-47 12-23 (50)
205 PRK06393 rpoE DNA-directed RNA 20.0 49 0.0011 30.0 0.9 23 54-87 4-26 (64)
206 COG4416 Com Mu-like prophage p 20.0 61 0.0013 28.5 1.4 22 66-87 7-33 (60)
No 1
>PLN02436 cellulose synthase A
Probab=100.00 E-value=0 Score=2902.86 Aligned_cols=1087 Identities=86% Similarity=1.446 Sum_probs=1018.7
Q ss_pred CCCCCcccccccCCceEEEeecccccccccccccCCccccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCC
Q 001373 1 MATNGRLVAGSHNRNEFVLINADEVARVTSVKELSGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQA 80 (1091)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~ 80 (1091)
||+++|||||||||||||+++.|++.++||++++++|+||||||+||+|+|||+|||||||+|||||||||||||||||+
T Consensus 1 m~~~~~~~~gs~~r~e~~~~~~d~~~~~k~~~~~~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~ 80 (1094)
T PLN02436 1 MNTGGRLIAGSHNRNEFVLINADEIARIRSVQELSGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQA 80 (1094)
T ss_pred CCcccccccccccccceeEeccccccCCCCccccCCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCcc
Confidence 99999999999999999999999766779999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhcccccCCCCCCCCCCCCCccccccccccCC-CCCchhhHHHhhhhccccCCCCCcccccccCCCccccccccC
Q 001373 81 CPQCKTRYKRIKGSPRVDGDEEEDDTDDLENEFDIND-RKDPHHIAEAMLSSRLNIGRGSQAYVSGITTPSEVDSVSVAQ 159 (1091)
Q Consensus 81 CpqCkt~Ykr~kgsprv~gd~ee~~~dd~~~ef~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (1091)
|||||||||||||||||+|||||||+||+||||+|.. +++.++++|+|++|+|++|++.+.....+..+.+.. +..+
T Consensus 81 Cpqckt~Y~r~kgs~~~~~d~ee~~~dd~e~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 158 (1094)
T PLN02436 81 CPQCKTRYKRIKGSPRVEGDEEEDDIDDLENEFDYGNNGLDPEQVAEAMLSSRLNTGRHSNVSGIATPSELDSA--PPGS 158 (1094)
T ss_pred CcccCCchhhccCCCCcCCccccccchhhhhhhcCcccccchHHHHHHHhhhhcccCccccccccccccccccC--CCcC
Confidence 9999999999999999999999999999999999863 333377899999999999998762211111112221 0025
Q ss_pred CCcccccCC--CCCCCCCcCcccccCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCccccCccccccchhhHHHHHhhh
Q 001373 160 EIPLLTYGN--EDVGISSDKHALIIPPFMGRGKRIHPMSFPDGFMTLPPRPMDPKKDLAVYGYGTVAWKERMEEWKKKQN 237 (1091)
Q Consensus 160 ~~~~l~~~~--~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 237 (1091)
++|+|++++ +|++ +++|++++|+.+|.||||||+||+|++.++++|.+||+||+++||||||+||||||+||+||+
T Consensus 159 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~wkerv~~wk~kq~ 236 (1094)
T PLN02436 159 QIPLLTYGEEDVEIS--SDRHALIVPPSTGHGNRVHPMPFPDSSASLQPRPMVPQKDLAVYGYGSVAWKDRMEEWKKKQN 236 (1094)
T ss_pred CCcccccCcccCccC--CcccccccCCcccccccccccccccccccCCCccCCccccccccccCcHHHHHHHHHHHhhhh
Confidence 789999876 5555 567787788888889999999999999999999999999999999999999999999999998
Q ss_pred hhhhhcccCCCCCCCCCCCCCCCCCCCcCccCCCCCceeeeecCCCCcchhHHHHHHHHHHHHHhhhhhccccccchhhH
Q 001373 238 EKLQVVKHQGGNGGGNNDGDGVDDPDLPMMDEGRQPLSRKLPISSSKISPYRLIILLRLVILGLFFHYRILHPVNDAYGL 317 (1091)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~yR~~i~~~l~~l~~~l~wRi~~~~~~a~~l 317 (1091)
+|++++.+..+..+|+.++.+.+++|++++|++++||+||+++++++|+|||++++++|+++++||+||++|++.+++|+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pL~~~~~i~~~~~~pyR~~~~~rlv~l~~fl~yRi~~~~~~a~~~ 316 (1094)
T PLN02436 237 EKLQVVKHEGGNDGGNNDGDELDDPDLPMMDEGRQPLSRKLPIPSSKINPYRMIIILRLVILGLFFHYRILHPVNDAYGL 316 (1094)
T ss_pred hcccccccccccccCCCCCCCCCCcccccccccCCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHhhccCcccHHH
Confidence 55555544322223344432334678899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCcccccccchhhhHhhhhhccCCCCCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCC
Q 001373 318 WLTSVICEIWFAVSWILDQFPKWDPIVRETYLDRLSLRYEKEGKPSDLADIDIFVSTVDPMKEPPLITANTVLSILAVDY 397 (1091)
Q Consensus 318 wl~~~~~Ei~f~~~wiL~q~~kw~Pv~R~~~~~rL~~r~~~~~~~~~lP~VDvfV~T~dP~kEPp~v~~nTvls~la~DY 397 (1091)
|+++++||+||+|+|+|+|++||+||+|+||+|||++||++++++++||+|||||||+||.||||++|+||||||||+||
T Consensus 317 Wl~s~~cE~WFaf~Wll~Q~~Kw~Pv~R~t~~drL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DY 396 (1094)
T PLN02436 317 WLTSVICEIWFAVSWILDQFPKWYPIERETYLDRLSLRYEKEGKPSELASVDVFVSTVDPMKEPPLITANTVLSILAVDY 396 (1094)
T ss_pred HHHHHHHHHHHHHHHHHccCcccccccceeCHHHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred CCCCcEEEEcCCCchhhhHHHHhhhHHHhhhhhhhhhhcCCCCCCchhhhhhccccccCCCCchHHHHHHHHHHHHHHHH
Q 001373 398 PVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRAPEWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFK 477 (1091)
Q Consensus 398 P~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFCkk~~iepRaPe~YFs~~~d~~~~~~~~~f~~err~mkreYee~k 477 (1091)
|+|||+|||||||+|+||||||.|||+|||+||||||||+|||||||+||++|.|+++++.+|+|++|||+|||||||||
T Consensus 397 P~eKlscYvSDDGgS~LTf~AL~EAa~FAk~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mKreYEe~K 476 (1094)
T PLN02436 397 PVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFSIEPRAPEWYFSQKMDYLKNKVHPAFVRERRAMKREYEEFK 476 (1094)
T ss_pred cccceEEEEecCCchHHHHHHHHHHHHHHHhhcccccccCCCcCCHHHHhhccCCcccccCChhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCCccccCCCCCCCCCCCCCCchhhhhhhcCCCCccccCCccCcEEEEeccCCCCCCCCCcchhhHH
Q 001373 478 VRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVRDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNA 557 (1091)
Q Consensus 478 ~rI~~l~~~~~~~p~~~w~m~dg~~w~g~~~rdHp~iiqv~l~~~g~~d~~~~~lP~lvYvsRekRpg~~hh~KAGalNa 557 (1091)
+|||+|+++++++|+++|.|+|||+|||+++||||+|||||++++|+.|.+|++||+||||||||||||+||+||||||+
T Consensus 477 ~RIe~l~~~~~~vp~~~~~m~dgt~W~g~~~~dHp~IIqVll~~~~~~d~~g~~LP~LVYVSREKRPg~~Hh~KAGAMNa 556 (1094)
T PLN02436 477 VKINALVATAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGHSGVRDVEGNELPRLVYVSREKRPGFDHHKKAGAMNS 556 (1094)
T ss_pred HHHHHHHhhcccCchhhhhhccCccCCCCCCCCCccceEEEecCCCCcccccccCceEEEEecccCCCCCcchhhhhhhh
Confidence 99999999889999999999999999999999999999999999998999999999999999999999999999999999
Q ss_pred HHHhhccccCCCEEEEecCCCCCCcHHHHHHHHHhhcCCCCCcceEEEecceeecCCCccccccchhhhhhhhhcccccc
Q 001373 558 LIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDG 637 (1091)
Q Consensus 558 llrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~va~VQ~PQ~F~nid~~Dry~n~~~vFfdi~~~glDg 637 (1091)
|+||||+|||||||||||||||+|||+++|+||||||||+.|+++|||||||+|+|+|++|||+|+++||||++|+|+||
T Consensus 557 LlRVSavmTNaP~ILNLDCDmYiNns~a~r~AMCfllD~~~g~~~afVQFPQrF~gi~k~D~Y~n~~~vffdi~~~GlDG 636 (1094)
T PLN02436 557 LIRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDG 636 (1094)
T ss_pred hhhhheeecCCceEEecccccccCchHHHHHhhhhhcCCccCCeeEEEcCCcccCCCCCCCcccccceEeeecccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccccccchhhhhhcCCCCCCCCCCCCCcCCCCCCccccccccccccccccC----CccCCcchhhhhhhhhhhhc
Q 001373 638 IQGPIYVGTGCVFRRQALYGYDAPVKKKPPRKTCNCLPKWCCCCCRSRKKSKKGKS----NKKNKDTSKQIYALENIEEG 713 (1091)
Q Consensus 638 ~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 713 (1091)
+|||+|+||||+|||+||||++||...+.+...++||+.|||+||+.|++++++++ +.++.+...+++++++++++
T Consensus 637 lqGP~YvGTGC~frR~aLYG~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 716 (1094)
T PLN02436 637 IQGPIYVGTGCVFRRQALYGYDAPKKKKPPGKTCNCWPKWCCLCCGSRKKKKKKKSKEKKKKKNREASKQIHALENIEEG 716 (1094)
T ss_pred CCCccccccCceeeeeeeeccCCccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999987766666788999999999998877543322 12334556688899999999
Q ss_pred ccccccccccCCchhhHhhhcCCcHHHHHhhhhhhCCCCCCCChhhHHHhhhhhccccccccCccccccCcccccccchH
Q 001373 714 IEGIDNEKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGASTASLLNEAIHVISCGYEDKTDWGKEIGWIYGSVTEDI 793 (1091)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~~~~~~~~~~l~ea~~v~sc~YE~~T~WG~evGW~ygsvTEDi 793 (1091)
++++++|++..+++++++++||+|++|++|++++.||.+...+++++++||+||+||+||++|+||+||||+|||+|||+
T Consensus 717 ~~~~~~~~~~~~~~~~l~~~FG~S~~fi~S~~~~~~~~~~~~~~~s~l~eA~~V~sC~YE~~T~WG~evGwiYGSvTEDv 796 (1094)
T PLN02436 717 IEGSNNEKSSETPQLKLEKKFGQSPVFVASTLLENGGVPRNASPASLLREAIQVISCGYEDKTEWGKEIGWIYGSVTEDI 796 (1094)
T ss_pred cccccchhhhhhhhhhHHhhhcccHHHHHHHHHhhcCCCCCCCcHHHHHHHHHhhcCCCcccChhhHhhCeeccceecHH
Confidence 99999999999999999999999999999999999999988888999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCcEEEEecCCCCcccccCCCCHHHHHHHHHHHhhcchHHHhhhccccccccCCCCCccccchhhhhhhHHh
Q 001373 794 LTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEILLSRHCPIWYGYGCGLKPLERFSYINSVVYPI 873 (1091)
Q Consensus 794 ~TglrLh~~GWrsvY~~p~~~AF~G~aP~tl~~~l~QR~RWA~G~lQil~sk~~Pl~~g~~~~L~~~QRL~Yl~~~ly~l 873 (1091)
.||++||++||||+|++|+++||.|+||+|+.+++.||+|||+|++||+++|++|+++|+.++|+++||++|+++++||+
T Consensus 797 ~TG~rLH~rGWrSvY~~P~r~AF~GlAP~~L~d~L~Qr~RWA~G~lQIffsr~nPl~~g~~~~L~l~QRL~Yl~~~ly~l 876 (1094)
T PLN02436 797 LTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYGGGLKWLERFSYINSVVYPW 876 (1094)
T ss_pred HHHHHHHcCCCceEeCCCCchhhcCcCCCCHHHHHHHHHHHhhcceeeeeccCCcchhcccccCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988778999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCcccccchhHHHHHHHHHHHHHHHHHHHHhhccCcccccccchhhHHHhhhhHHHHHHHHH
Q 001373 874 TSIPLIAYCTLPAICLLTGKFIVPEISNYASILFMALFISIAATGILEMQWGGVGIHDWWRNEQFWVIGGASSHLFALIQ 953 (1091)
Q Consensus 874 ~sl~~liylllP~l~Ll~G~~iip~~s~~~~i~fi~lfls~~~~~lLe~~wsG~si~~wWrne~~W~I~~~sa~lfAv~~ 953 (1091)
++++.++|+++|++||++|++++|.++.+++++|+++|++++++++||++|+|.++++||||||||+|.++|+|+||+++
T Consensus 877 ~Slp~liY~~lP~l~LL~G~~i~P~vs~~~~~~fi~lfls~~~~~lLE~~wsG~si~~WWrnQq~w~I~~tSa~Lfavl~ 956 (1094)
T PLN02436 877 TSIPLIVYCTLPAICLLTGKFIVPEISNYASILFMALFISIAATGILEMQWGGVGIDDWWRNEQFWVIGGVSSHLFALFQ 956 (1094)
T ss_pred HHHHHHHHHHHHHHHHHcCCeecCccchHHHHHHHHHHHHHHHHHHHHHHhccccHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999989999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCccceeeCCCCCCCCccccceecccccchHHHHHHHHHHHHHHHHHHHHHHhcCcccchhhHHHHHHHHHHH
Q 001373 954 GLLKVVGGVNTNFTVTSKAADDGEFSDLYLFKWTSLLIPPLTLLVFNLIGVIIGVADAISNGYETWGPLFGKLFFSLWVI 1033 (1091)
Q Consensus 954 aLlk~L~g~~~~F~VTpKg~~~~~~~~ly~f~ws~L~iP~~~Llilnlvaiv~gi~r~i~~g~~~wg~l~g~lf~~~Wvv 1033 (1091)
+++|+|++++++|.||+|..+++.++++|+|+|+++++|+++++++|++|+++|+++++++++++|+++++++|+++|++
T Consensus 957 ~iLKvLggs~~~F~VTsK~~d~~~~a~ly~f~~S~L~iP~tti~ilNlvaiv~Gi~~~i~~g~~~~g~l~~~l~~~~wvv 1036 (1094)
T PLN02436 957 GLLKVLAGVNTNFTVTSKAADDGEFSELYLFKWTSLLIPPTTLLIINIIGVIVGVSDAINNGYDSWGPLFGRLFFALWVI 1036 (1094)
T ss_pred HHHHHhccCcccceecccccccccccceeeecceeHhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHH
Confidence 99999999999999999998766778999999999999999999999999999999999989999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHhheeeecCCCCCCCccccccCCCCC
Q 001373 1034 LHLYPFLKGFLGKQDRLPTILLVWAILLASIFSLLWARVNPFVSKGDIVLEVCGLDCN 1091 (1091)
Q Consensus 1034 v~l~Pfl~gL~gR~~r~P~~v~~~s~~la~~f~~l~v~~~~~~~~~~~~~~~~~~~~~ 1091 (1091)
+|+|||++|||||++|+||||++||++||++||||||+||||++++||++++|||||+
T Consensus 1037 v~lyPf~kgL~gr~~r~P~~v~v~s~lla~~~~l~~v~~~~~~~~~~~~~~~~~~~~~ 1094 (1094)
T PLN02436 1037 VHLYPFLKGLLGKQDRMPTIILVWSILLASILTLLWVRVNPFVSKGGPVLEICGLDCD 1094 (1094)
T ss_pred HHHHHHHHHHhccCCCCCeeehHHHHHHHHHHHHHHeeeccccCCCCccccccCccCC
Confidence 9999999999999999999999999999999999999999999999999999999996
No 2
>PLN02400 cellulose synthase
Probab=100.00 E-value=0 Score=2890.25 Aligned_cols=1068 Identities=67% Similarity=1.214 Sum_probs=989.5
Q ss_pred CCCCCcccccccCCceEEEeecccccccccccccCCccccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCC
Q 001373 1 MATNGRLVAGSHNRNEFVLINADEVARVTSVKELSGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQA 80 (1091)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~ 80 (1091)
||+++|||||||||||||+|+.|++.++||++++++|+||||||+||+|+|||+|||||||+|||||||||||||||||+
T Consensus 1 ~~~~~glvaGSh~Rnelv~i~~d~~~g~kp~~~~~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~ 80 (1085)
T PLN02400 1 MEANAGMVAGSYRRNELVRIRHDSDSGPKPLKNLNGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQC 80 (1085)
T ss_pred CCCccccccccccccceeeecccccccCCCccccCCceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCcc
Confidence 99999999999999999999999877789999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhcccccCCCCCCCCCCCCCccccccccccCCCCCchhhHHHhhhhccccCCCCCcccccccCCCccccccccCC
Q 001373 81 CPQCKTRYKRIKGSPRVDGDEEEDDTDDLENEFDINDRKDPHHIAEAMLSSRLNIGRGSQAYVSGITTPSEVDSVSVAQE 160 (1091)
Q Consensus 81 CpqCkt~Ykr~kgsprv~gd~ee~~~dd~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (1091)
|||||||||||||||||+|||||||+||+||||+|..++++.. +++. |++.+.... ..++ .++
T Consensus 81 CPQCkTrYkR~KgsprV~GDeeedd~DDlenEf~~~~~~~~~~-------~~~~-~~~~~~~~~---~~~~------~~~ 143 (1085)
T PLN02400 81 CPQCKTRYRRHKGSPRVEGDEDEDDVDDLENEFNYAQGNGKAR-------HQWQ-GEDIELSSS---SRHE------SQP 143 (1085)
T ss_pred CcccCCccccccCCCCCCcccccccchhhhhhhcccccccccc-------cccc-ccCccccCc---cccc------CCC
Confidence 9999999999999999999999999999999999964322111 1111 444331100 0000 157
Q ss_pred CcccccCC---CCCCCCCcCcccccCCCC---CCCcccccCCCCCCCCCCCCCCCCCCCCccccCccccccchhhHHHHH
Q 001373 161 IPLLTYGN---EDVGISSDKHALIIPPFM---GRGKRIHPMSFPDGFMTLPPRPMDPKKDLAVYGYGTVAWKERMEEWKK 234 (1091)
Q Consensus 161 ~~~l~~~~---~~~~~~~~~~~~~~~~~~---g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 234 (1091)
+|+|++++ +|+++++++|++++++.+ |.||||||+||+|+.+|+++|.+||+||+++||||||+||||||+||+
T Consensus 144 ~p~lt~g~~~s~ei~~~~~~~~~~~~~~~~~~~~~~~vh~~p~~d~~~~~~~~~~d~~~~~~~~g~g~~~wkerv~~wk~ 223 (1085)
T PLN02400 144 IPLLTHGQPVSGEIPCATPDNQSVRTTSGPLGPAERNANSSPYIDPRQPVPVRIVDPSKDLNSYGLGNVDWKERVEGWKL 223 (1085)
T ss_pred CccccCCcccCCCCCCCCCccccccCCcccccccCCcccccCccCcccCCCccccCccccccccccCcHHHHHHHHHHHh
Confidence 89999976 899988777766666654 346999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhcccCCCC-CCCCCCCCCCCCCCCcCccCCCCCceeeeecCCCCcchhHHHHHHHHHHHHHhhhhhccccccc
Q 001373 235 KQNEKLQVVKHQGGN-GGGNNDGDGVDDPDLPMMDEGRQPLSRKLPISSSKISPYRLIILLRLVILGLFFHYRILHPVND 313 (1091)
Q Consensus 235 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~yR~~i~~~l~~l~~~l~wRi~~~~~~ 313 (1091)
||+||+.++.+.... .+|+.++++.+++|+++||++++||+||+++++++|+|||++++++|+++++||+||++|++.+
T Consensus 224 ~~~k~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~~~~~~pL~~~~~i~~~~~~~yR~~~~~~lv~l~~~l~yRi~~~~~~ 303 (1085)
T PLN02400 224 KQDKNMMQMTNKYHEGKGGDMEGTGSNGDELQMADDARLPMSRVVPIPSSRLTPYRIVIILRLIILGFFLQYRVTHPVKD 303 (1085)
T ss_pred hhhhhccccccccccccccCCCCCCCCcccccccccccCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHhhccCcc
Confidence 998876655553311 1224443334477899999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhcCcccccccchhhhHhhhhhccCCCCCCCCceeEEEecCCCCCCCHHHHHHHHHHHH
Q 001373 314 AYGLWLTSVICEIWFAVSWILDQFPKWDPIVRETYLDRLSLRYEKEGKPSDLADIDIFVSTVDPMKEPPLITANTVLSIL 393 (1091)
Q Consensus 314 a~~lwl~~~~~Ei~f~~~wiL~q~~kw~Pv~R~~~~~rL~~r~~~~~~~~~lP~VDvfV~T~dP~kEPp~v~~nTvls~l 393 (1091)
++|+|+++++||+||+|+|+|+|++||+||+|+||+|||++||++++++++||+|||||||+||.||||++|+|||||||
T Consensus 304 ~~~~Wl~s~~cE~wFaf~Wll~q~~Kw~Pv~R~t~~drL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiL 383 (1085)
T PLN02400 304 AYGLWLTSVICEIWFALSWLLDQFPKWYPINRETYLDRLALRYDRDGEPSQLAPVDVFVSTVDPLKEPPLVTANTVLSIL 383 (1085)
T ss_pred cHHHHHHHHHHHHHHHHHHHHccCcccccccceeCHHHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred cCCCCCCCcEEEEcCCCchhhhHHHHhhhHHHhhhhhhhhhhcCCCCCCchhhhhhccccccCCCCchHHHHHHHHHHHH
Q 001373 394 AVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRAPEWYFAQKLDYLKDKVNPSFIRERRAMKREY 473 (1091)
Q Consensus 394 a~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFCkk~~iepRaPe~YFs~~~d~~~~~~~~~f~~err~mkreY 473 (1091)
|+|||+|||+|||||||+|+||||||.|||+|||+||||||||+|||||||+||++|.|+++++.+|+|++|||+|||||
T Consensus 384 A~DYP~eKlscYvSDDGgS~LTf~Al~Eaa~FA~~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mK~eY 463 (1085)
T PLN02400 384 AVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEFYFAQKIDYLKDKIQPSFVKERRAMKREY 463 (1085)
T ss_pred hhcccccceEEEEecCCchHHHHHHHHHHHHHHHhhcchhhhcCCCcCCHHHHhccCCCcccCCCchhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCccccCCCCCCCCCCCCCCchhhhhhhcCCCCccccCCccCcEEEEeccCCCCCCCCCcch
Q 001373 474 EEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVRDIEGNLLPRLVYVSREKRPGFDHHKKAG 553 (1091)
Q Consensus 474 ee~k~rI~~l~~~~~~~p~~~w~m~dg~~w~g~~~rdHp~iiqv~l~~~g~~d~~~~~lP~lvYvsRekRpg~~hh~KAG 553 (1091)
||||+|||+|+++++++|+++|.|+|||+|||+++||||+|||||++++|+.|.+|++||+|||||||||||++||+|||
T Consensus 464 Ee~k~RIe~l~~~~~~~~~~~~~m~dgt~W~g~~~~dHp~iIqVll~~~~~~d~~g~~LP~LVYVSREKRP~~~Hh~KAG 543 (1085)
T PLN02400 464 EEFKVRINALVAKAQKIPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGHSGGLDTDGNELPRLVYVSREKRPGFQHHKKAG 543 (1085)
T ss_pred HHHHHHHHHHHhhhccCCccccccccCccCCCCCCCCCchhhhhhhcCCCCcccccccCceeEEEeccCCCCCCcchhhh
Confidence 99999999999999999999999999999999999999999999999999989999999999999999999999999999
Q ss_pred hhHHHHHhhccccCCCEEEEecCCCCCCcHHHHHHHHHhhcCCCCCcceEEEecceeecCCCccccccchhhhhhhhhcc
Q 001373 554 AMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMK 633 (1091)
Q Consensus 554 alNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~va~VQ~PQ~F~nid~~Dry~n~~~vFfdi~~~ 633 (1091)
|||+|+||||+|||||||||||||||+|||+++|+||||||||+.|+++|||||||+|+|+|++|||+|+++||||++|+
T Consensus 544 AMNaLlRVSavmTNaP~ILNlDCDmY~Nns~a~r~AMCf~lD~~~g~~~afVQFPQrF~gi~~~D~Y~n~~~vffdi~~~ 623 (1085)
T PLN02400 544 AMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAIGKKTCYVQFPQRFDGIDLHDRYANRNIVFFDINLK 623 (1085)
T ss_pred hhHHHHHHhhhhcCCceEEecccccccCCchhHHhhhhheeccCCCceeEEEeCCcccCCCCCCCCcccceeEEeecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCccccccccchhhhhhcCCCCCCCCCCCCCcCCCCCCccccccccccccccccCC-------ccCCcchhhhhh
Q 001373 634 GLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKPPRKTCNCLPKWCCCCCRSRKKSKKGKSN-------KKNKDTSKQIYA 706 (1091)
Q Consensus 634 glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~-------~~~~~~~~~~~~ 706 (1091)
|+||+|||+|+||||+|||+||||++||..++...... .|++||+.|+++++++.+ .+..+++.++++
T Consensus 624 GldGlqGP~YvGTGC~frR~aLYG~~p~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 698 (1085)
T PLN02400 624 GLDGIQGPVYVGTGCCFNRQALYGYDPVLTEEDLEPNI-----IVKSCCGSRKKGKGSKKYNIDKKRAMKRTESNVPIFN 698 (1085)
T ss_pred ccccCCCccccccCcceeeeeeccCCCccccccccccc-----ccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999986543212111 134577766654322111 133456678999
Q ss_pred hhhhhhcccccccccccCCchhhHhhhcCCcHHHHHhhhhhhCCCCCCCChhhHHHhhhhhccccccccCccccccCccc
Q 001373 707 LENIEEGIEGIDNEKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGASTASLLNEAIHVISCGYEDKTDWGKEIGWIY 786 (1091)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~~~~~~~~~~l~ea~~v~sc~YE~~T~WG~evGW~y 786 (1091)
++++++++++++++++.++++++++++||+|++|++|++++.||.+...+++++++||+||+||+||++|+||+||||+|
T Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~l~~~fG~S~~fi~S~~~~~~~~~~~~~~~~ll~eA~~V~sC~YE~~T~WG~evGwiY 778 (1085)
T PLN02400 699 MEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPSTNPATLLKEAIHVISCGYEDKTEWGKEIGWIY 778 (1085)
T ss_pred ccccccccccccchhhhhhhhhhhhhhccccHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhccCCccCCchhhhhCeec
Confidence 99999999999999988999999999999999999999999999988888999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHCCcEEEEecCCCCcccccCCCCHHHHHHHHHHHhhcchHHHhhhccccccccCCCCCccccchhh
Q 001373 787 GSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEILLSRHCPIWYGYGCGLKPLERFSYI 866 (1091)
Q Consensus 787 gsvTEDi~TglrLh~~GWrsvY~~p~~~AF~G~aP~tl~~~l~QR~RWA~G~lQil~sk~~Pl~~g~~~~L~~~QRL~Yl 866 (1091)
||+|||+.||++||++||||+|++|++++|.|+||+|+.+++.||+|||+|++||+++++||+++|+.++|+++||++|+
T Consensus 779 GSvTED~~TG~~LH~rGWrSvY~~p~r~af~GlAP~~l~d~L~Qr~RWA~G~lqI~~sr~nPl~~G~~~~L~l~QRL~Yl 858 (1085)
T PLN02400 779 GSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERLAYI 858 (1085)
T ss_pred cceechHHHHHHHHccCCceEecCCCcHhhcCcCCCCHHHHHHHHHHHhhcchheeeccCCccccccCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998777899999999999
Q ss_pred hhhhHHhHHHHHHHHHHHHHHHHHhCCcccccchhHHHHHHHHHHHHHHHHHHHHhhccCcccccccchhhHHHhhhhHH
Q 001373 867 NSVVYPITSIPLIAYCTLPAICLLTGKFIVPEISNYASILFMALFISIAATGILEMQWGGVGIHDWWRNEQFWVIGGASS 946 (1091)
Q Consensus 867 ~~~ly~l~sl~~liylllP~l~Ll~G~~iip~~s~~~~i~fi~lfls~~~~~lLe~~wsG~si~~wWrne~~W~I~~~sa 946 (1091)
++++||++++++++|+++|++||++|++++|.++++++++|+++|++++++++||++|+|+++++||||||||+|.++|+
T Consensus 859 ~~~~y~~~slp~liY~llP~l~LltG~~i~P~vs~~~~~~fi~lf~~~~~~~lLE~~~sG~si~~WWrnQq~w~I~~~Sa 938 (1085)
T PLN02400 859 NTIVYPITSIPLLAYCVLPAFCLITNKFIIPEISNYASMWFILLFISIFATGILELRWSGVGIEDWWRNEQFWVIGGTSA 938 (1085)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCccCCccchHHHHHHHHHHHHHHHHHHHHHhhcCccHHHhhhccceeeehhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCccceeeCCCCCCC-CccccceecccccchHHHHHHHHHHHHHHHHHHHHHHhcCcccchhhHHH
Q 001373 947 HLFALIQGLLKVVGGVNTNFTVTSKAADD-GEFSDLYLFKWTSLLIPPLTLLVFNLIGVIIGVADAISNGYETWGPLFGK 1025 (1091)
Q Consensus 947 ~lfAv~~aLlk~L~g~~~~F~VTpKg~~~-~~~~~ly~f~ws~L~iP~~~Llilnlvaiv~gi~r~i~~g~~~wg~l~g~ 1025 (1091)
|+||++++++|+|++++++|.||+|..++ +.+.++|+|+|+++++|+++++++|++|+++|+++++++++++|++++++
T Consensus 939 ~Lfavl~~ilKvLgg~~~~F~VTsK~~d~~~~~~ely~f~~s~L~iP~ttl~llNlvaiv~Gv~~~i~~g~~~~g~l~~~ 1018 (1085)
T PLN02400 939 HLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDFAELYVFKWTSLLIPPTTVLLVNLVGIVAGVSYAINSGYQSWGPLFGK 1018 (1085)
T ss_pred HHHHHHHHHHHHhcCCcccceecCCcccccccccceeeecccchhHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHH
Confidence 99999999999999999999999998763 45689999999999999999999999999999999999899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHhheeeecCCCCC-CCc-cccccCCCC
Q 001373 1026 LFFSLWVILHLYPFLKGFLGKQDRLPTILLVWAILLASIFSLLWARVNPFVSK-GDI-VLEVCGLDC 1090 (1091)
Q Consensus 1026 lf~~~Wvvv~l~Pfl~gL~gR~~r~P~~v~~~s~~la~~f~~l~v~~~~~~~~-~~~-~~~~~~~~~ 1090 (1091)
+|+++|+++|+|||++|||||++|+|+||++||++||++|+||||+||||+++ +|| ++++|||+|
T Consensus 1019 ~~~~~wvvv~l~Pf~kgL~gR~~r~P~~v~~~s~lla~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~ 1085 (1085)
T PLN02400 1019 LFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRIDPFVSDTTKAAANGQCGVNC 1085 (1085)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHHHHHHHheeccccccCCCCchhHhhcCcCC
Confidence 99999999999999999999999999999999999999999999999999999 999 899999999
No 3
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=100.00 E-value=2.4e-313 Score=2780.58 Aligned_cols=1052 Identities=68% Similarity=1.226 Sum_probs=966.4
Q ss_pred ccccccccccccCCccccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhcccccCCCCCCCCCC
Q 001373 23 DEVARVTSVKELSGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRVDGDEE 102 (1091)
Q Consensus 23 ~~~~~~~~~~~~~~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Ykr~kgsprv~gd~e 102 (1091)
|++.++||++++++|+||||||+||+|+|||+|||||||+|||||||||||||||||+|||||||||||||||||+||||
T Consensus 4 ~~~~~~k~~~~~~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYkr~kgsprv~gDee 83 (1079)
T PLN02638 4 EGETGAKPMKHGGGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKRHKGSPAILGDEE 83 (1079)
T ss_pred CCCCCCCCccccCCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhcCCCCcCcccc
Confidence 56666789999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC-ccccccccccCC--CCCchhhHHHhhhhccccCCCCCcccccccCCCccccccccCCCcccccCC---CCCCCCCc
Q 001373 103 EDD-TDDLENEFDIND--RKDPHHIAEAMLSSRLNIGRGSQAYVSGITTPSEVDSVSVAQEIPLLTYGN---EDVGISSD 176 (1091)
Q Consensus 103 e~~-~dd~~~ef~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~ 176 (1091)
||+ +||+||||+|.. ++..++++|+|+||+|+||+++|....+ ++. +++ .+++|+|++|| +|++++++
T Consensus 84 ed~~~dDle~ef~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~----~~~-~~~-~~~~~~~~~g~~~~~~~~~~~~ 157 (1079)
T PLN02638 84 EDGDADDGASDFNYPSSNQDQKQKIAERMLSWRMNSGRGEDVGAPN----YDK-EVS-HNHIPLLTNGQSVSGELSAASP 157 (1079)
T ss_pred ccCcchhhhhhhccccccccchhHHHHHHhhhhcccCcCccccccc----ccc-cCC-CCCCcccccCccccCccCCCCC
Confidence 886 899999999863 2233778999999999999987622100 000 011 25789999876 88887766
Q ss_pred CcccccCCCCCCCcccccCCCCCCC-CCCCCCCCCCCCCccccCccccccchhhHHHHHhhhhhhhhcccCC----CCCC
Q 001373 177 KHALIIPPFMGRGKRIHPMSFPDGF-MTLPPRPMDPKKDLAVYGYGTVAWKERMEEWKKKQNEKLQVVKHQG----GNGG 251 (1091)
Q Consensus 177 ~~~~~~~~~~g~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~----~~~~ 251 (1091)
+|++++++.+ .|||| ||+|+. +|.++|.|||+||+++|||||++||||||+||+||+||+.++.+.. +.++
T Consensus 158 ~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~wk~~~~k~~~~~~~~~~~~~~~~~ 233 (1079)
T PLN02638 158 ERLSMASPGA-GGKRI---PYASDVNQSPNIRVVDPVREFGSPGLGNVAWKERVDGWKMKQDKNTIPMSTGTAPSEGRGG 233 (1079)
T ss_pred ccccccCccc-cCCcc---cccccccccCCcccCCccccccccccccHHHHHHHHHHHhcccccccccccccccccccCc
Confidence 6655556653 57998 898865 7899999999999999999999999999999999987766554432 2222
Q ss_pred CCCCC-CCCCCCCCcCccCCCCCceeeeecCCCCcchhHHHHHHHHHHHHHhhhhhccccccchhhHHHHHHHHHHHHHH
Q 001373 252 GNNDG-DGVDDPDLPMMDEGRQPLSRKLPISSSKISPYRLIILLRLVILGLFFHYRILHPVNDAYGLWLTSVICEIWFAV 330 (1091)
Q Consensus 252 ~~~~~-~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~yR~~i~~~l~~l~~~l~wRi~~~~~~a~~lwl~~~~~Ei~f~~ 330 (1091)
++.++ ++.+++|+++|+++++||+||+++++++|+|||++++++|+++++||+||++|++.+++|+|+++++||+||+|
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~pL~~~~~i~~~~~~~yR~~~~~~l~~l~~~l~yRi~~~~~~~~~~Wl~s~~cE~WFaf 313 (1079)
T PLN02638 234 GDIDASTDVLMDDALLNDEARQPLSRKVSIPSSRINPYRMVIVLRLVILCIFLHYRITNPVRNAYALWLISVICEIWFAL 313 (1079)
T ss_pred CCCCCccccccccccccccCCCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHH
Confidence 34432 23346899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCcccccccchhhhHhhhhhccCCCCCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCC
Q 001373 331 SWILDQFPKWDPIVRETYLDRLSLRYEKEGKPSDLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDG 410 (1091)
Q Consensus 331 ~wiL~q~~kw~Pv~R~~~~~rL~~r~~~~~~~~~lP~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG 410 (1091)
+|+|+|++||+||+|+||+|||++||++|+++++||+|||||||+||.||||++|+||||||||+|||+|||+|||||||
T Consensus 314 ~Wll~q~~Kw~Pv~R~t~~drL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDG 393 (1079)
T PLN02638 314 SWILDQFPKWLPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDG 393 (1079)
T ss_pred HHHHhccccccccccccCHHHHHHHhccCCCcccCCCccEEEeCCCCccCccHHHHHHHHHHHhhcccccceeEEEecCC
Confidence 99999999999999999999999999998888999999999999999999999999999999999999999999999999
Q ss_pred chhhhHHHHhhhHHHhhhhhhhhhhcCCCCCCchhhhhhccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 001373 411 AAMLTFEALSETSEFARKWVPFCKKFKIEPRAPEWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKV 490 (1091)
Q Consensus 411 ~s~ltf~al~Eaa~FA~~WvPFCkk~~iepRaPe~YFs~~~d~~~~~~~~~f~~err~mkreYee~k~rI~~l~~~~~~~ 490 (1091)
+|+||||||.|||+|||+||||||||+|||||||+||++|.|+++++.+|+|++|||+|||||||||+|||+++++++++
T Consensus 394 gS~LTf~AL~EAa~FA~~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mK~eYEe~k~RIe~l~a~~~~~ 473 (1079)
T PLN02638 394 AAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKVRINGLVAKAQKV 473 (1079)
T ss_pred chHHHHHHHHHHHHHHHhhcccccccCCCcCCHHHHhccCCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccCCCCCCCCCCCCCCchhhhhhhcCCCCccccCCccCcEEEEeccCCCCCCCCCcchhhHHHHHhhccccCCCE
Q 001373 491 PEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVRDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPY 570 (1091)
Q Consensus 491 p~~~w~m~dg~~w~g~~~rdHp~iiqv~l~~~g~~d~~~~~lP~lvYvsRekRpg~~hh~KAGalNallrvSav~tngp~ 570 (1091)
|+++|.|+||++|||+++||||+||||+++++|+.|.+|++||+|||||||||||++||+||||||+|+||||+||||||
T Consensus 474 p~~~~~m~dgt~W~g~~~~dHp~IiqVll~~~~~~d~~g~~lP~LVYVSREKRPg~~Hh~KAGAMNaLlRVSavmTNaPf 553 (1079)
T PLN02638 474 PEEGWIMQDGTPWPGNNTRDHPGMIQVFLGHSGGLDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPF 553 (1079)
T ss_pred CCccccccCCccCCCCCCCCCHHHHHHHhcCCCccccccccccceEEEecccCCCCCcccccchHHHHHHHhhhccCCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCcHHHHHHHHHhhcCCCCCcceEEEecceeecCCCccccccchhhhhhhhhccccccCCCccccccccch
Q 001373 571 LLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVF 650 (1091)
Q Consensus 571 Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~va~VQ~PQ~F~nid~~Dry~n~~~vFfdi~~~glDg~qgp~yvGTgcvf 650 (1091)
|||||||||+|||++||+||||||||+.|+++|||||||+|+|+|++|||+|+++||||++|+|+||+|||+||||||+|
T Consensus 554 ILNLDCDmYiNns~alr~AMCf~lDp~~g~~vafVQFPQrF~~i~k~D~Ygn~~~vffdi~~~GlDGlqGP~YvGTGC~f 633 (1079)
T PLN02638 554 LLNLDCDHYINNSKALREAMCFLMDPNLGKSVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVF 633 (1079)
T ss_pred EeecccCcccCchHHHHHhhhhhcCcccCCeeEEecCCcccCCCCCCCcccccceeeeccccccccccCCccccccCcce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCCCCCCCCCCCcCCCCCCcccccccccccc-ccccCC-------ccCCcchhhhhhhhhhhhcccc--cccc
Q 001373 651 RRQALYGYDAPVKKKPPRKTCNCLPKWCCCCCRSRKKS-KKGKSN-------KKNKDTSKQIYALENIEEGIEG--IDNE 720 (1091)
Q Consensus 651 RR~ALyG~~p~~~~~~~~~~~~~~~~~~~~c~~~~~~~-~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~--~~~~ 720 (1091)
||+||||++||...+. +.+..+++||+..++. ++.+++ .++...+.+++++++++++.++ ++++
T Consensus 634 RR~ALYG~~p~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 (1079)
T PLN02638 634 NRTALYGYEPPIKPKH------KKPGFLSSLCGGSRKKSSKSSKKGSDKKKSGKHVDPTVPVFNLEDIEEGVEGAGFDDE 707 (1079)
T ss_pred eehhhcCcCCcccccc------cccccccccccccccccccccchhhccccccccccccccccccccccccccccccchh
Confidence 9999999999875321 1122223456553332 121110 1233445677888888887775 5567
Q ss_pred cccCCchhhHhhhcCCcHHHHHhhhhhhCCCCCCCChhhHHHhhhhhccccccccCccccccCcccccccchHHHHHHHH
Q 001373 721 KSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGASTASLLNEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMH 800 (1091)
Q Consensus 721 ~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~~~~~~~~~~l~ea~~v~sc~YE~~T~WG~evGW~ygsvTEDi~TglrLh 800 (1091)
++.++++++++++||+|++|++|++++.+|.+...+++++++||++|+||+||++|+||+||||+|||+|||+.||++||
T Consensus 708 ~~~~~~~~~~~~~fG~S~~fi~S~~~~~~~~~~~~~~~s~l~eA~~V~sC~YE~~T~WG~evGw~YGSvTEDv~TG~rLH 787 (1079)
T PLN02638 708 KSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATPESLLKEAIHVISCGYEDKTDWGSEIGWIYGSVTEDILTGFKMH 787 (1079)
T ss_pred hhhhhhhhhhhhhccccHHHHHHHHHhhcCCCCCCCcHHHHHHHHhhccCCCccCCchhhhcCeeecceecHHHHHHHHH
Confidence 78889999999999999999999999999999888899999999999999999999999999999999999999999999
Q ss_pred HCCcEEEEecCCCCcccccCCCCHHHHHHHHHHHhhcchHHHhhhccccccccCCCCCccccchhhhhhhHHhHHHHHHH
Q 001373 801 CHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEILLSRHCPIWYGYGCGLKPLERFSYINSVVYPITSIPLIA 880 (1091)
Q Consensus 801 ~~GWrsvY~~p~~~AF~G~aP~tl~~~l~QR~RWA~G~lQil~sk~~Pl~~g~~~~L~~~QRL~Yl~~~ly~l~sl~~li 880 (1091)
++||||+|++|+++||.|+||+|+.+++.||+|||+|++||+++|++|+++|+.++|+++||++|+++++||++++++++
T Consensus 788 ~rGWrSvY~~P~r~AF~GlAP~~l~d~L~Qr~RWA~G~lqI~fsr~nPl~~G~~~rL~l~QRL~Yl~~~~yp~~sip~li 867 (1079)
T PLN02638 788 ARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKWLERFAYVNTTIYPITSIPLLL 867 (1079)
T ss_pred cCCCcEEecCCCchHhcCcCCCCHHHHHHHHHHHhhcchheeeccCCccccccCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999899999999999999999999999999999999999999887789999999999999999999999999
Q ss_pred HHHHHHHHHHhCCcccccchhHHHHHHHHHHHHHHHHHHHHhhccCcccccccchhhHHHhhhhHHHHHHHHHHHHHHhc
Q 001373 881 YCTLPAICLLTGKFIVPEISNYASILFMALFISIAATGILEMQWGGVGIHDWWRNEQFWVIGGASSHLFALIQGLLKVVG 960 (1091)
Q Consensus 881 ylllP~l~Ll~G~~iip~~s~~~~i~fi~lfls~~~~~lLe~~wsG~si~~wWrne~~W~I~~~sa~lfAv~~aLlk~L~ 960 (1091)
|+++|++||++|++++|.++++++++|+++|++++++++||++|+|.++++||||||||+|.++|+|+||++++++|+|+
T Consensus 868 Y~llP~l~Ll~G~~i~P~vs~~~~~~f~~lfl~~~~~~llE~~wsG~si~~WWrnQr~w~I~~tSa~lfavl~~iLK~Lg 947 (1079)
T PLN02638 868 YCTLPAVCLLTGKFIIPQISNIASIWFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGLLKVLA 947 (1079)
T ss_pred HHHHHHHHHHcCCccCCCccchHHHHHHHHHHHHHHHHHHHHHhccccHHHHhhhhhheehhhhHHHHHHHHHHHHHHHc
Confidence 99999999999999999998998899999999999999999999999999999999999999999999999999999999
Q ss_pred CCccceeeCCCCCCC-CccccceecccccchHHHHHHHHHHHHHHHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHH
Q 001373 961 GVNTNFTVTSKAADD-GEFSDLYLFKWTSLLIPPLTLLVFNLIGVIIGVADAISNGYETWGPLFGKLFFSLWVILHLYPF 1039 (1091)
Q Consensus 961 g~~~~F~VTpKg~~~-~~~~~ly~f~ws~L~iP~~~Llilnlvaiv~gi~r~i~~g~~~wg~l~g~lf~~~Wvvv~l~Pf 1039 (1091)
+++++|.||+|..++ +.++++|+|+||++++|+++|+++|++|+++|+++++++++++|+++++++|+++|+++|+|||
T Consensus 948 gs~~~F~VTsK~~d~~~~~~ely~f~wS~l~iP~ttl~iiNlvaiv~g~~~~~~~g~~~~~~~~~~~~~~~wvv~~l~Pf 1027 (1079)
T PLN02638 948 GIDTNFTVTSKASDEDGDFAELYMFKWTTLLIPPTTLLIINLVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIVHLYPF 1027 (1079)
T ss_pred cCcccceeccccccccccccceeEecceehhHHHHHHHHHHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHH
Confidence 999999999998763 4578999999999999999999999999999999999988989999999999999999999999
Q ss_pred HHHhhcCCCCcchhHHHHHHHHHHHHHhheeeecCCCCC-CCccccccCCCC
Q 001373 1040 LKGFLGKQDRLPTILLVWAILLASIFSLLWARVNPFVSK-GDIVLEVCGLDC 1090 (1091)
Q Consensus 1040 l~gL~gR~~r~P~~v~~~s~~la~~f~~l~v~~~~~~~~-~~~~~~~~~~~~ 1090 (1091)
++|||||++|+||||++||++||++||||||+|+||+++ +||++++|||+|
T Consensus 1028 ~kgl~gR~~r~P~~v~v~s~ll~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~ 1079 (1079)
T PLN02638 1028 LKGLMGRQNRTPTIVVVWSILLASIFSLLWVRIDPFTTRVTGPDVEQCGINC 1079 (1079)
T ss_pred HHHHhccCCCCCeeehHHHHHHHHHHHHHHheecccccCCCCchhhccCcCC
Confidence 999999999999999999999999999999999999999 999999999999
No 4
>PLN02189 cellulose synthase
Probab=100.00 E-value=7.9e-305 Score=2700.11 Aligned_cols=1030 Identities=68% Similarity=1.241 Sum_probs=949.5
Q ss_pred CCCCCcccccccCCceEEEeecccccccccccccCCccccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCC
Q 001373 1 MATNGRLVAGSHNRNEFVLINADEVARVTSVKELSGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQA 80 (1091)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~ 80 (1091)
||+++|||||||||||||+++.| + +.||++++++|+||||||+||+|+|||+|||||||+|||||||||||||||||+
T Consensus 1 ~~~~~g~~~gs~~r~~~~~~~~~-~-~~k~~~~~~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~ 78 (1040)
T PLN02189 1 MEASAGLVAGSHNRNELVVIHGH-E-EPKPLRNLDGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQN 78 (1040)
T ss_pred CCcccccccccccccceeeeccc-c-CCCCcccccCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCcc
Confidence 99999999999999999999977 3 458899999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhcccccCCCCCCCCCCCCCccccccccccCCC-CCchhhHHHhhhhccccCCCCCcccccccCCCccccccccC
Q 001373 81 CPQCKTRYKRIKGSPRVDGDEEEDDTDDLENEFDINDR-KDPHHIAEAMLSSRLNIGRGSQAYVSGITTPSEVDSVSVAQ 159 (1091)
Q Consensus 81 CpqCkt~Ykr~kgsprv~gd~ee~~~dd~~~ef~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (1091)
|||||||||||||||||+|||||||+||+||||+|..+ ++.++++|+|++++|++|++.+... + .+
T Consensus 79 CpqCkt~Y~r~kgs~~v~gd~ee~~~dd~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~-----~~ 145 (1040)
T PLN02189 79 CPQCKTRYKRLKGSPRVEGDDDEEDIDDIEHEFNIDDEQDKNKHITEAMLHGKMSYGRGPDDDE--------N-----NQ 145 (1040)
T ss_pred CcccCCchhhccCCCCcCCccccccchhhhhhccccccccchhHHHHHHhhhhcccCCCcccCC--------C-----cC
Confidence 99999999999999999999999999999999999643 3337789999999999998876221 1 15
Q ss_pred CCcccccCC-----CCCCCCC--cCcccccCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCccccCccccccchhhHHH
Q 001373 160 EIPLLTYGN-----EDVGISS--DKHALIIPPFMGRGKRIHPMSFPDGFMTLPPRPMDPKKDLAVYGYGTVAWKERMEEW 232 (1091)
Q Consensus 160 ~~~~l~~~~-----~~~~~~~--~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 232 (1091)
++|++++++ +|++..+ .+|++++++. .||||||+||+|. ++|.|||+||++ ||||||+|
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~----~~~~~~~~~~~~--------wk~rv~~w 211 (1040)
T PLN02189 146 FPPVITGVRSRPVSGEFPIGSGYGHGEQMLSSS--LHKRVHPYPVSEP----GSAKWDEKKEGG--------WKERMDDW 211 (1040)
T ss_pred CCcccccCccccccCCcCccccccccccccCCc--ccCccCcccccCC----CcccCCcccccc--------HHHHHHHH
Confidence 678899865 5555211 1344455554 5799999999983 468999999974 99999999
Q ss_pred HHhhhhhhhhcccCCCCCCCCCCCCCCCCCCCcCccCCCCCceeeeecCCCCcchhHHHHHHHHHHHHHhhhhhcccccc
Q 001373 233 KKKQNEKLQVVKHQGGNGGGNNDGDGVDDPDLPMMDEGRQPLSRKLPISSSKISPYRLIILLRLVILGLFFHYRILHPVN 312 (1091)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~yR~~i~~~l~~l~~~l~wRi~~~~~ 312 (1091)
|+||+ ..+++ + +++++|+++++++++||+||+++++++++|||++++++|+++++||+||++|++.
T Consensus 212 k~~~~-------~~~~~------~-~~~~~d~~~~~~~~~pL~~~~~~~~~~~~pyR~~~~~~l~~l~~~l~yRi~~~~~ 277 (1040)
T PLN02189 212 KMQQG-------NLGPD------P-DDYDADMALIDEARQPLSRKVPIASSKVNPYRMVIVARLVVLAFFLRYRILHPVH 277 (1040)
T ss_pred Hhhcc-------cCCCC------C-CCCchhhhhcccCCCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHhcCcCc
Confidence 99995 11111 1 2235678888999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhcCcccccccchhhhHhhhhhccCCCCCCCCceeEEEecCCCCCCCHHHHHHHHHHH
Q 001373 313 DAYGLWLTSVICEIWFAVSWILDQFPKWDPIVRETYLDRLSLRYEKEGKPSDLADIDIFVSTVDPMKEPPLITANTVLSI 392 (1091)
Q Consensus 313 ~a~~lwl~~~~~Ei~f~~~wiL~q~~kw~Pv~R~~~~~rL~~r~~~~~~~~~lP~VDvfV~T~dP~kEPp~v~~nTvls~ 392 (1091)
+++|+|+++++||+||+|+|+|+|++||+||+|+||+|||++||++|+++++||+|||||||+||.||||++|+||||||
T Consensus 278 ~~~~~W~~s~~~E~wFaf~Wll~q~~kw~Pv~R~t~~drL~~r~~~~~~~~~LP~vDvFV~TADP~kEPPl~t~NTVLSi 357 (1040)
T PLN02189 278 DAIGLWLTSIICEIWFAVSWILDQFPKWFPIDRETYLDRLSLRYEREGEPNMLSPVDIFVSTVDPLKEPPLVTANTVLSI 357 (1040)
T ss_pred cchHHHHHHHHHHHHHHHHHHHccCcccccccceeCHHHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998888999999999999999999999999999999
Q ss_pred HcCCCCCCCcEEEEcCCCchhhhHHHHhhhHHHhhhhhhhhhhcCCCCCCchhhhhhccccccCCCCchHHHHHHHHHHH
Q 001373 393 LAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRAPEWYFAQKLDYLKDKVNPSFIRERRAMKRE 472 (1091)
Q Consensus 393 la~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFCkk~~iepRaPe~YFs~~~d~~~~~~~~~f~~err~mkre 472 (1091)
||+|||+|||+|||||||+|+||||||.|||+|||+||||||||||||||||+||++|.|+++++.+|+|++|||+||||
T Consensus 358 LA~DYP~eKlscYvSDDGgS~LTf~AL~EAa~FA~~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~~K~e 437 (1040)
T PLN02189 358 LAMDYPVDKISCYVSDDGASMLTFEALSETAEFARKWVPFCKKFSIEPRAPEFYFSLKVDYLKDKVQPTFVKERRAMKRE 437 (1040)
T ss_pred HhhcccccceeEEEecCCchHHHHHHHHHHHHHHHhhcccccccCCCcCCHHHHhccCCCcccccCCchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCccccCCCCCCCCCCCCCCchhhhhhhcCCCCccccCCccCcEEEEeccCCCCCCCCCcc
Q 001373 473 YEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVRDIEGNLLPRLVYVSREKRPGFDHHKKA 552 (1091)
Q Consensus 473 Yee~k~rI~~l~~~~~~~p~~~w~m~dg~~w~g~~~rdHp~iiqv~l~~~g~~d~~~~~lP~lvYvsRekRpg~~hh~KA 552 (1091)
|||||+|||+++++++++|+++|.|+||++|||++++|||+||||+++++|+.|.+|++||+|||||||||||++||+||
T Consensus 438 YEe~kvRI~~l~a~~~~~p~~~~~m~dGt~W~g~~~~dHp~IiQVll~~~~~~d~~g~~lP~LVYVSREKrPg~~Hh~KA 517 (1040)
T PLN02189 438 YEEFKVRINAIVAKAQKVPPEGWIMQDGTPWPGNNTRDHPGMIQVFLGHSGGHDTEGNELPRLVYVSREKRPGFQHHKKA 517 (1040)
T ss_pred HHHHHHHHHHHHhhcCccCCccceeccCccCCCCCCCCCHHHHHHHhcCCCCccccccccceeEEEeccCCCCCCcccch
Confidence 99999999999999999999999999999999999999999999999999988999999999999999999999999999
Q ss_pred hhhHHHHHhhccccCCCEEEEecCCCCCCcHHHHHHHHHhhcCCCCCcceEEEecceeecCCCccccccchhhhhhhhhc
Q 001373 553 GAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINM 632 (1091)
Q Consensus 553 GalNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~va~VQ~PQ~F~nid~~Dry~n~~~vFfdi~~ 632 (1091)
||||+|+||||+|||||||||||||||+|||++||+||||||||+.|+++|||||||+|+|+|++|||+|++++|||++|
T Consensus 518 GAMNaLlRVSavmTNaPfILNLDCDmY~Nns~alr~AMCfflDp~~g~~vAfVQFPQrF~~i~k~D~Ygn~~~vffdi~~ 597 (1040)
T PLN02189 518 GAMNALIRVSAVLTNAPFMLNLDCDHYINNSKAVREAMCFLMDPQIGRKVCYVQFPQRFDGIDTHDRYANRNTVFFDINM 597 (1040)
T ss_pred hhHHHHHHHhhhccCCCeEEEccCccccCchHHHHHhhhhhcCCccCceeEEEeCccccCCCCCCCccCCccceeeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCccccccccchhhhhhcCCCCCCCCCCCCCcCCCCCCccccccccccccccccCCccCCcchhhhhhhhhhhh
Q 001373 633 KGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKPPRKTCNCLPKWCCCCCRSRKKSKKGKSNKKNKDTSKQIYALENIEE 712 (1091)
Q Consensus 633 ~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 712 (1091)
+|+||+|||+||||||+|||+||||++|+...+.+...+ .+++||..++++++.+ .... ...+
T Consensus 598 ~GlDGlqGP~YvGTGC~fRR~ALyG~~p~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-~~~~-----------~~~~ 660 (1040)
T PLN02189 598 KGLDGIQGPVYVGTGCVFRRQALYGYDPPKGPKRPKMVT-----CDCCPCFGRRKKKHAK-NGLN-----------GEVA 660 (1040)
T ss_pred cccccCCCccccccCceeeeeeeeccCcccccccccccc-----cchhhhcccccccccc-cccc-----------cccc
Confidence 999999999999999999999999999876543333222 1233444443321110 0000 0012
Q ss_pred cccccccccccCCchhhHhhhcCCcHHHHHhhhhhhCCCCCCCChhhHHHhhhhhccccccccCccccccCcccccccch
Q 001373 713 GIEGIDNEKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGASTASLLNEAIHVISCGYEDKTDWGKEIGWIYGSVTED 792 (1091)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~~~~~~~~~~l~ea~~v~sc~YE~~T~WG~evGW~ygsvTED 792 (1091)
++++++++++..+++++++++||+|.+|++|++.+.+|.+....++++++||++|+||+||++|+||+||||.|||+|||
T Consensus 661 ~~~~~~~~~~~~~~~~~~~~~fG~S~~fi~S~~~~~~~~~~~~~~~~~l~eA~~V~sC~YE~~T~WG~evGw~YGSvTED 740 (1040)
T PLN02189 661 ALGGMESDKEMLMSQMNFEKKFGQSAIFVTSTLMEEGGVPPSSSPAALLKEAIHVISCGYEDKTDWGLELGWIYGSITED 740 (1040)
T ss_pred cccccchhhhhhhhhhhhHhhhccchhhhhhhhhhhcCCCCCCCcHHHHHHHHHhhccccccCCchhhccCeeccccccH
Confidence 33445556666788999999999999999999999999888888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCcEEEEecCCCCcccccCCCCHHHHHHHHHHHhhcchHHHhhhccccccccC-CCCCccccchhhhhhhH
Q 001373 793 ILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEILLSRHCPIWYGYG-CGLKPLERFSYINSVVY 871 (1091)
Q Consensus 793 i~TglrLh~~GWrsvY~~p~~~AF~G~aP~tl~~~l~QR~RWA~G~lQil~sk~~Pl~~g~~-~~L~~~QRL~Yl~~~ly 871 (1091)
+.||++||++||||+|++|+++||.|+||+|+.+++.||+|||+|++||+++++||+++|+. ++|+++||++|+++++|
T Consensus 741 ~~TG~rlH~rGWrSvY~~p~r~AF~GlAP~~L~~~L~Qr~RWA~G~lqI~~sr~nPl~~g~~~~~L~l~QRL~Yl~~~ly 820 (1040)
T PLN02189 741 ILTGFKMHCRGWRSIYCMPKRAAFKGSAPINLSDRLNQVLRWALGSVEIFFSRHSPLLYGYKGGNLKWLERFAYVNTTIY 820 (1040)
T ss_pred HHHHHHHHccCCceEecCCCcHHhcCcCCCCHHHHHHHHHHHhhhhHHHhhccCCccccccCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998763 67999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHhCCcccccchhHHHHHHHHHHHHHHHHHHHHhhccCcccccccchhhHHHhhhhHHHHHHH
Q 001373 872 PITSIPLIAYCTLPAICLLTGKFIVPEISNYASILFMALFISIAATGILEMQWGGVGIHDWWRNEQFWVIGGASSHLFAL 951 (1091)
Q Consensus 872 ~l~sl~~liylllP~l~Ll~G~~iip~~s~~~~i~fi~lfls~~~~~lLe~~wsG~si~~wWrne~~W~I~~~sa~lfAv 951 (1091)
|++++++++|+++|++||++|++++|.++++++++|+++|++++++.++|++|+|+++++||||||||+|.++|+|+||+
T Consensus 821 ~~~sip~liY~~lP~l~Ll~g~~i~p~vs~~~~~~fi~lf~~~~~~~llE~~~sG~s~~~WWrnQq~w~I~~~Sa~Lfav 900 (1040)
T PLN02189 821 PFTSLPLLAYCTLPAICLLTGKFIMPPISTFASLFFIALFMSIFATGILELRWSGVSIEEWWRNEQFWVIGGVSAHLFAV 900 (1040)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcccCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHhhhhhHHHHhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCccceeeCCCCCCCCccccceecccccchHHHHHHHHHHHHHHHHHHHHHHhcCcccchhhHHHHHHHHH
Q 001373 952 IQGLLKVVGGVNTNFTVTSKAADDGEFSDLYLFKWTSLLIPPLTLLVFNLIGVIIGVADAISNGYETWGPLFGKLFFSLW 1031 (1091)
Q Consensus 952 ~~aLlk~L~g~~~~F~VTpKg~~~~~~~~ly~f~ws~L~iP~~~Llilnlvaiv~gi~r~i~~g~~~wg~l~g~lf~~~W 1031 (1091)
+++++|+|++++++|.||+|..+++.++++|+|+||++++|+++|+++|++|+++|+++++++++++|+++++++|+++|
T Consensus 901 l~~ilKvlggs~~~F~VTsK~~~d~~~~~ly~f~~s~l~iP~ttl~i~Nlvaiv~g~~~~~~~~~~~~~~~~~~~~~~~w 980 (1040)
T PLN02189 901 VQGLLKVLAGIDTNFTVTSKATDDDEFGELYAFKWTTLLIPPTTLLIINIVGVVAGISDAINNGYQSWGPLFGKLFFAFW 980 (1040)
T ss_pred HHHHHHHhccCcccceeccccccccccccceeecceeHhHHHHHHHHHHHHHHHHHHHHHHhcCccccchhHHHHHHHHH
Confidence 99999999999999999999988878889999999999999999999999999999999999888899999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHhheeeecCCCCC-CCccccccCCCC
Q 001373 1032 VILHLYPFLKGFLGKQDRLPTILLVWAILLASIFSLLWARVNPFVSK-GDIVLEVCGLDC 1090 (1091)
Q Consensus 1032 vvv~l~Pfl~gL~gR~~r~P~~v~~~s~~la~~f~~l~v~~~~~~~~-~~~~~~~~~~~~ 1090 (1091)
+++|+|||++|||||++|+||||++||++|+++|+||||+||||+++ +||++++|||+|
T Consensus 981 vv~~~~Pf~kgl~gR~~r~P~~v~v~s~ll~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~ 1040 (1040)
T PLN02189 981 VIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVLKTKGPDVKQCGINC 1040 (1040)
T ss_pred HHHHHHHHHHHHhccCCCCCeeehHHHHHHHHHHHHHHheecccccCCCCchhhccCcCC
Confidence 99999999999999999999999999999999999999999999999 999999999999
No 5
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=100.00 E-value=1.3e-302 Score=2681.54 Aligned_cols=1001 Identities=68% Similarity=1.277 Sum_probs=931.1
Q ss_pred ccccCCccccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhcccccCCCCCCCC-CCCCCcccc
Q 001373 31 VKELSGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRVDGD-EEEDDTDDL 109 (1091)
Q Consensus 31 ~~~~~~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Ykr~kgsprv~gd-~ee~~~dd~ 109 (1091)
-++.++|+||||||+||+|+|||+|||||||+|||||||||||||||||+|||||||||||||||||+|| |||+++||+
T Consensus 10 ~~~~~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~~~~~~~~~~~d~~~~~~~dd~ 89 (1044)
T PLN02915 10 RQSADAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYKRHKGCPRVEGDDEEGNDMDDF 89 (1044)
T ss_pred ccCCCcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhcCCCCccCCccccccchhh
Confidence 3678999999999999999999999999999999999999999999999999999999999999999999 567889999
Q ss_pred ccccccCCCCCchhhHHHhhhhccccCCCCCcccccccCCCccccccccCCCcccccCCCCCCCCCcCcccccCCCCCCC
Q 001373 110 ENEFDINDRKDPHHIAEAMLSSRLNIGRGSQAYVSGITTPSEVDSVSVAQEIPLLTYGNEDVGISSDKHALIIPPFMGRG 189 (1091)
Q Consensus 110 ~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~ 189 (1091)
||||++...+++ +.|++++|++|++.+.... .. .+++|++++ ++|++
T Consensus 90 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-------~~----~~~~~~~~~-~~~~~----------------- 136 (1044)
T PLN02915 90 EDEFQIKSPQDH----EPVHQNVFAGSENGDYNAQ-------QW----RPGGPAFSS-TGSVA----------------- 136 (1044)
T ss_pred hhhhcccccccc----chhhhhhccCCCCcccccc-------cc----CCCCccccC-CCCcC-----------------
Confidence 999998653322 2388999999888652110 00 134566655 33322
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCccccCccccccchhhHHHHHhhhhhhhhcccCCCCCCCCCCCCCCCCCCCcCccC
Q 001373 190 KRIHPMSFPDGFMTLPPRPMDPKKDLAVYGYGTVAWKERMEEWKKKQNEKLQVVKHQGGNGGGNNDGDGVDDPDLPMMDE 269 (1091)
Q Consensus 190 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (1091)
-+.+||+|| ||||++||||||+||+||+ |++.+.+..++ .++ ..+++|+++|++
T Consensus 137 ----------------~~~~~~~~~----~~g~~~wk~r~~~wk~~~~-~~~~~~~~~~~----~~~-~~~~~~~~~~~~ 190 (1044)
T PLN02915 137 ----------------GKDLEAERE----GYGNAEWKDRVDKWKTRQE-KRGLVNKDDSD----DGD-DKGDEEEYLLAE 190 (1044)
T ss_pred ----------------CCCcCcccc----CcCCHHHHHHHHHHHhhhh-hhccccccccC----CCC-CCCCcccccccc
Confidence 135889997 9999999999999999997 44444443221 111 223678899999
Q ss_pred CCCCceeeeecCCCCcchhHHHHHHHHHHHHHhhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhcCcccccccchhh
Q 001373 270 GRQPLSRKLPISSSKISPYRLIILLRLVILGLFFHYRILHPVNDAYGLWLTSVICEIWFAVSWILDQFPKWDPIVRETYL 349 (1091)
Q Consensus 270 ~~~pl~~~~~~~~~~~~~yR~~i~~~l~~l~~~l~wRi~~~~~~a~~lwl~~~~~Ei~f~~~wiL~q~~kw~Pv~R~~~~ 349 (1091)
+++||+||+++++++|+|||++++++|+++++||+||++|++.+++|+|+++++||+||+|+|+|+|++||+||+|+||+
T Consensus 191 ~~~pL~~~~~i~~~~~~pyR~~~~~rlv~l~~fl~yRi~~~~~~a~~~Wl~s~~cE~wFaf~Wll~q~~Kw~Pv~R~t~~ 270 (1044)
T PLN02915 191 ARQPLWRKVPIPSSKINPYRIVIVLRLVILCFFFRFRILTPAYDAYPLWLISVICEIWFALSWILDQFPKWFPINRETYL 270 (1044)
T ss_pred cCCCceEEEecCcccchhHHHHHHHHHHHHHHHHHHHhcCcCCCchHHHHHHHHHHHHHHHHHHHccCccccccccccCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhhhhccCCCCCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCchhhhHHHHhhhHHHhhhh
Q 001373 350 DRLSLRYEKEGKPSDLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKW 429 (1091)
Q Consensus 350 ~rL~~r~~~~~~~~~lP~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~W 429 (1091)
|||++||++++++++||+|||||||+||.||||++|+||||||||+|||+|||+|||||||+|+||||||.|||+|||+|
T Consensus 271 drL~~r~e~~~~~~~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~AL~EAa~FAk~W 350 (1044)
T PLN02915 271 DRLSMRFERDGEPNRLAPVDVFVSTVDPLKEPPIITANTVLSILAVDYPVDKVSCYVSDDGASMLLFDTLSETAEFARRW 350 (1044)
T ss_pred HHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceeEEEecCCchHhHHHHHHHHHHHHHhh
Confidence 99999999998899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcCCCCCCchhhhhhccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCCCCCCC
Q 001373 430 VPFCKKFKIEPRAPEWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVR 509 (1091)
Q Consensus 430 vPFCkk~~iepRaPe~YFs~~~d~~~~~~~~~f~~err~mkreYee~k~rI~~l~~~~~~~p~~~w~m~dg~~w~g~~~r 509 (1091)
|||||||+|||||||+||+++.|+++++.+|+|++|||+|||||||||+|||+|+++++++|+++|.|+|||+|||+++|
T Consensus 351 vPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mKreYEe~K~RIe~l~~~~~~~~~~~~~m~dgt~W~g~~~~ 430 (1044)
T PLN02915 351 VPFCKKHNIEPRAPEFYFSQKIDYLKDKVQPTFVKERRAMKREYEEFKVRINALVAKAQKKPEEGWVMQDGTPWPGNNTR 430 (1044)
T ss_pred cchhhhcCCCcCCHHHHhccCCCccccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccccCCccCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhhhhhcCCCCccccCCccCcEEEEeccCCCCCCCCCcchhhHHHHHhhccccCCCEEEEecCCCCCCcHHHHHHH
Q 001373 510 DHPGMIQVFLGQNGVRDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREA 589 (1091)
Q Consensus 510 dHp~iiqv~l~~~g~~d~~~~~lP~lvYvsRekRpg~~hh~KAGalNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~a 589 (1091)
|||+|||||++++|+.|.+|++||+||||||||||||+||+||||||+|+||||+|||||||||||||||+|||+++|+|
T Consensus 431 dHp~IIqVll~~~~~~d~~g~~lP~LVYVSREKRP~~~Hh~KAGAMNaLlRVSavmTNaP~iLNlDCDmY~Nns~a~r~A 510 (1044)
T PLN02915 431 DHPGMIQVYLGSEGALDVEGKELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYINNSKAVREA 510 (1044)
T ss_pred CCccceEEeecCCCCcccccCccceeEEEecccCCCCCcchhhhhhhhHhhhhheeecCcEEEeeccccccCcchhhHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCcceEEEecceeecCCCccccccchhhhhhhhhccccccCCCccccccccchhhhhhcCCCCCCCCCCCCC
Q 001373 590 MCFMMDPTSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKPPRK 669 (1091)
Q Consensus 590 mcff~Dp~~g~~va~VQ~PQ~F~nid~~Dry~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~ 669 (1091)
|||||||+.|+++|||||||+|+|+|++|||+|+++||||++|+|+||+|||+||||||+|||+||||++||..++.+..
T Consensus 511 MCf~lD~~~g~~~afVQFPQrF~gidk~D~Y~n~~~Vffdi~~~GldGlqGP~YvGTGCffrR~aLYG~~pp~~~~~~~~ 590 (1044)
T PLN02915 511 MCFLMDPQLGKKLCYVQFPQRFDGIDRHDRYANRNVVFFDINMKGLDGIQGPVYVGTGCVFNRQALYGYDPPVSEKRPKM 590 (1044)
T ss_pred ceeeecCCCCCeeEEEeCCcccCCCCCCCCcCccceEEEeeecccccccCCcccccCCceeeeeeecCcCCccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988777888
Q ss_pred cCCCCCCccccccccccccccccCC-----------------------------ccCCcchhhhhhhhhhhhccccccc-
Q 001373 670 TCNCLPKWCCCCCRSRKKSKKGKSN-----------------------------KKNKDTSKQIYALENIEEGIEGIDN- 719 (1091)
Q Consensus 670 ~~~~~~~~~~~c~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~- 719 (1091)
+++||+.||++||+.++++++..++ +...+++.+++++++|++++|++++
T Consensus 591 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (1044)
T PLN02915 591 TCDCWPSWCCCCCGGGRRGKSKKSKKGKKGRRSLLGGLKKRKKKGGGGGSMMGKKYGRKKSQAVFDLEEIEEGLEGYDEL 670 (1044)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccch
Confidence 8999999999899887764332100 0012245577899999999999877
Q ss_pred ccccCCchhhHhhhcCCcHHHHHhhhhhhCCCCCCCChhhHHHhhhhhccccccccCccccccCcccccccchHHHHHHH
Q 001373 720 EKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGASTASLLNEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKM 799 (1091)
Q Consensus 720 ~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~~~~~~~~~~l~ea~~v~sc~YE~~T~WG~evGW~ygsvTEDi~TglrL 799 (1091)
|++++++++.++++||+|++|++|++.+.+|.+...+++++++||+|||||+||++|+||+||||.|||+|||+.||++|
T Consensus 671 ~~~~~~~~~~~~~~fG~S~~fi~S~~~~~~~~~~~~~~~s~l~eA~~V~sC~YE~~T~WG~evGw~YGSvTEDv~TG~rL 750 (1044)
T PLN02915 671 EKSSLMSQKNFEKRFGQSPVFIASTLMEDGGLPEGTNPAALIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKM 750 (1044)
T ss_pred hhhhhhhhhhhhhhcCCcHHHHHHHHHhhcCCCCCCCcHHHHHHHHhccccCCCccCchhHhhCccccccccHHHHHHHH
Confidence 88889999999999999999999999999999988889999999999999999999999999999999999999999999
Q ss_pred HHCCcEEEEecCCCCcccccCCCCHHHHHHHHHHHhhcchHHHhhhccccccccCCCCCccccchhhhhhhHHhHHHHHH
Q 001373 800 HCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEILLSRHCPIWYGYGCGLKPLERFSYINSVVYPITSIPLI 879 (1091)
Q Consensus 800 h~~GWrsvY~~p~~~AF~G~aP~tl~~~l~QR~RWA~G~lQil~sk~~Pl~~g~~~~L~~~QRL~Yl~~~ly~l~sl~~l 879 (1091)
|++||||+|++|+++||.|+||+|+.++++||+|||+|++||++++++|+++++.++|+++||++|+++++||+.+++++
T Consensus 751 H~rGWrSvY~~p~r~AF~GlAP~~L~d~L~Qr~RWA~G~lqIf~sr~~Pl~~g~~~~L~l~QRL~Yl~~~~yp~~slp~l 830 (1044)
T PLN02915 751 HCRGWKSVYCMPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFMSRHCPLWYAYGGKLKWLERLAYINTIVYPFTSIPLL 830 (1044)
T ss_pred HccCCcEEeeCCCcHHhcCcCCCCHHHHHHHHHHHhhhHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999987678999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCcccccchhHHHHHHHHHHHHHHHHHHHHhhccCcccccccchhhHHHhhhhHHHHHHHHHHHHHHh
Q 001373 880 AYCTLPAICLLTGKFIVPEISNYASILFMALFISIAATGILEMQWGGVGIHDWWRNEQFWVIGGASSHLFALIQGLLKVV 959 (1091)
Q Consensus 880 iylllP~l~Ll~G~~iip~~s~~~~i~fi~lfls~~~~~lLe~~wsG~si~~wWrne~~W~I~~~sa~lfAv~~aLlk~L 959 (1091)
+|+++|++||++|++++|.++.+++++|+++|+++++++++|++|+|+++++||||||||+|.++|+|+||++++++|+|
T Consensus 831 iY~llP~l~LLtG~~i~P~~s~~~~~~f~~lfls~~~~~lLE~~wsG~si~~WWrnQq~w~I~~tSa~Lfavl~~iLKvL 910 (1044)
T PLN02915 831 AYCTIPAVCLLTGKFIIPTLNNLASIWFLALFLSIIATSVLELRWSGVSIEDLWRNEQFWVIGGVSAHLFAVFQGLLKVL 910 (1044)
T ss_pred HHHHHHHHHHHcCCcccCccchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999988877778889999999999999999999999999999999999999999999999999999
Q ss_pred cCCccceeeCCCCCCCC--ccccceecccccchHHHHHHHHHHHHHHHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHH
Q 001373 960 GGVNTNFTVTSKAADDG--EFSDLYLFKWTSLLIPPLTLLVFNLIGVIIGVADAISNGYETWGPLFGKLFFSLWVILHLY 1037 (1091)
Q Consensus 960 ~g~~~~F~VTpKg~~~~--~~~~ly~f~ws~L~iP~~~Llilnlvaiv~gi~r~i~~g~~~wg~l~g~lf~~~Wvvv~l~ 1037 (1091)
++++++|+||+|+.+++ +++++|+|+||++++|+++++++|++|+++|+++++++++++|+++++++|+++|+++|+|
T Consensus 911 g~se~~F~VTsK~~d~~~d~~~ely~F~~S~l~iP~ttllllNlvalv~Gi~~~i~~~~~~~g~l~~~l~~~~wvvv~ly 990 (1044)
T PLN02915 911 GGVDTNFTVTSKAADDEADEFGELYLFKWTTLLIPPTTLIILNMVGVVAGVSDAINNGYGSWGPLFGKLFFAFWVIVHLY 990 (1044)
T ss_pred cccCCcceecCCccccchhhhccceeecceehHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHH
Confidence 99999999999987533 4678999999999999999999999999999999998888999999999999999999999
Q ss_pred HHHHHhhcCCCCcchhHHHHHHHHHHHHHhheeeecCCCCC-CCccccccCCCC
Q 001373 1038 PFLKGFLGKQDRLPTILLVWAILLASIFSLLWARVNPFVSK-GDIVLEVCGLDC 1090 (1091)
Q Consensus 1038 Pfl~gL~gR~~r~P~~v~~~s~~la~~f~~l~v~~~~~~~~-~~~~~~~~~~~~ 1090 (1091)
||++|||||++|+||||++||++||++|+||||+||||+++ +||++++|||+|
T Consensus 991 Pf~kgLmgR~~r~P~~v~v~s~lla~~~~ll~v~~~~~~~~~~~~~~~~~~~~~ 1044 (1044)
T PLN02915 991 PFLKGLMGRQNRTPTIVVLWSILLASIFSLVWVRIDPFLPKQTGPILKQCGVEC 1044 (1044)
T ss_pred HHHHHHhCCCCCCCeeehHHHHHHHHHHHHHHheeccccCCCCCccccccCCCC
Confidence 99999999999999999999999999999999999999999 999999999999
No 6
>PLN02195 cellulose synthase A
Probab=100.00 E-value=7.2e-285 Score=2516.45 Aligned_cols=967 Identities=65% Similarity=1.223 Sum_probs=880.0
Q ss_pred ccCCccccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhcccccCCCCCCCCCCCCCccccccc
Q 001373 33 ELSGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRVDGDEEEDDTDDLENE 112 (1091)
Q Consensus 33 ~~~~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Ykr~kgsprv~gd~ee~~~dd~~~e 112 (1091)
+.++|+||||||+||+++|||+|||||||+|||||||||||||||||+||||||||| ||||+||+|||
T Consensus 3 ~~~~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk------------~~~~~~d~~~~ 70 (977)
T PLN02195 3 ESGAPICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD------------AENVFDDVETK 70 (977)
T ss_pred cCCCccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc------------cccccchhhhh
Confidence 467899999999999999999999999999999999999999999999999999998 57778999999
Q ss_pred cccCCCCCchhhHHHhhhhccccCCCCCcccccccCCCccccccccCCCcccccCCCCCCCCCcCcccccCCCCCCCccc
Q 001373 113 FDINDRKDPHHIAEAMLSSRLNIGRGSQAYVSGITTPSEVDSVSVAQEIPLLTYGNEDVGISSDKHALIIPPFMGRGKRI 192 (1091)
Q Consensus 113 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~v 192 (1091)
|+-+ .+++ .++|++|++.+ . + .+++|++++.++|+
T Consensus 71 ~~~~----~~~~-----~~~~~~~~~~~--~---------~----~~~~~~~~~~~~~~--------------------- 105 (977)
T PLN02195 71 HSRN----QSTM-----ASHLNDTQDVG--I---------H----ARHISSVSTVDSEL--------------------- 105 (977)
T ss_pred hccc----hhhh-----hhhcccCcCCC--C---------C----CccccccccCCCcc---------------------
Confidence 9321 1332 26787766532 0 0 02334443311110
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCccccCccccccchhhHHHHHhhhhhhhhcccCCCCCCCCCCCCCCCCCCCcCccCCCC
Q 001373 193 HPMSFPDGFMTLPPRPMDPKKDLAVYGYGTVAWKERMEEWKKKQNEKLQVVKHQGGNGGGNNDGDGVDDPDLPMMDEGRQ 272 (1091)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (1091)
+ | +|||++||||||+||.||+||+.++.+.+. ..++.++ +++++|+++ ||.++
T Consensus 106 ------------------~--~----~~~~~~wk~r~~~wk~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~-~~~~~ 158 (977)
T PLN02195 106 ------------------N--D----EYGNPIWKNRVESWKDKKNKKKKSAKKKEA-HKAQIPP-EQQMEEKPS-ADAYE 158 (977)
T ss_pred ------------------c--C----ccCCHHHHHHHHHHHHhhhhhccccccccc-cccCCCC-ccCCccccc-ccccC
Confidence 1 1 399999999999999999877765554432 1123332 334678886 99999
Q ss_pred CceeeeecCCCCcchhHHHHHHHHHHHHHhhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhcCcccccccchhhhHh
Q 001373 273 PLSRKLPISSSKISPYRLIILLRLVILGLFFHYRILHPVNDAYGLWLTSVICEIWFAVSWILDQFPKWDPIVRETYLDRL 352 (1091)
Q Consensus 273 pl~~~~~~~~~~~~~yR~~i~~~l~~l~~~l~wRi~~~~~~a~~lwl~~~~~Ei~f~~~wiL~q~~kw~Pv~R~~~~~rL 352 (1091)
||+||+++++++++|||++++++|+++++||+||++|++.+++|+|+++++||+||+|+|+|+|++||+||+|+||+|||
T Consensus 159 pL~~~~~i~~~~~~pyR~~~~~~l~~l~~~l~yRi~~~~~~~~~~Wl~s~~cE~wFaf~Wll~q~~Kw~Pv~R~t~~drL 238 (977)
T PLN02195 159 PLSRVIPIPRNKLTPYRAVIIMRLIILGLFFHYRITNPVDSAFGLWLTSVICEIWFAFSWVLDQFPKWSPINRETYIDRL 238 (977)
T ss_pred CceEEEecCcccchhHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHhcccccccccceECHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCCCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCchhhhHHHHhhhHHHhhhhhhh
Q 001373 353 SLRYEKEGKPSDLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPF 432 (1091)
Q Consensus 353 ~~r~~~~~~~~~lP~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPF 432 (1091)
++||++|+++++||+|||||||+||.||||++|+||||||||+|||+|||+|||||||+|+||||||.|||+|||+||||
T Consensus 239 ~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~AL~EAa~FA~~WvPF 318 (977)
T PLN02195 239 SARYEREGEPSQLAAVDFFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLSFESLVETAEFARKWVPF 318 (977)
T ss_pred HHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceEEEEecCCchHHHHHHHHHHHHHHHhhccc
Confidence 99999988899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCCchhhhhhccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCCCCCCCCCc
Q 001373 433 CKKFKIEPRAPEWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHP 512 (1091)
Q Consensus 433 Ckk~~iepRaPe~YFs~~~d~~~~~~~~~f~~err~mkreYee~k~rI~~l~~~~~~~p~~~w~m~dg~~w~g~~~rdHp 512 (1091)
||||+|||||||+||+++.|+++++.+|+|++|||+|||||||||+|||+|+++++++|+++|.|+||++|||+++||||
T Consensus 319 CkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~~K~eYEe~k~RIe~~~~~~~~~~~~~~~m~d~t~W~g~~~~dHp 398 (977)
T PLN02195 319 CKKYSIEPRAPEFYFSQKIDYLKDKVQPSFVKERRAMKRDYEEYKVRVNALVAKAQKTPEEGWTMQDGTPWPGNNTRDHP 398 (977)
T ss_pred ccccCCCcCCHHHHhccCCCcccCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcccccccCCccCCCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhcCCCCccccCCccCcEEEEeccCCCCCCCCCcchhhHHHHHhhccccCCCEEEEecCCCCCCcHHHHHHHHHh
Q 001373 513 GMIQVFLGQNGVRDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCF 592 (1091)
Q Consensus 513 ~iiqv~l~~~g~~d~~~~~lP~lvYvsRekRpg~~hh~KAGalNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcf 592 (1091)
+|||||++++|+.|.+|++||+|||||||||||++||+||||||+|+||||+|||||||||||||||+|||++||+||||
T Consensus 399 ~IIqVll~~~~~~d~~g~~lP~LVYVSREKrPg~~Hh~KAGamNallrvSavmTNap~il~lDcDmy~n~s~~lr~AMCf 478 (977)
T PLN02195 399 GMIQVFLGETGARDIEGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCF 478 (977)
T ss_pred chhhhhccCCCCcccccccCceeEEEeccCCCCCCcccccchhHHHHHHhhhccCCCeEEEecCccccCcHHHHHHHHhh
Confidence 99999999999899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCcceEEEecceeecCCCccccccchhhhhhhhhccccccCCCccccccccchhhhhhcCCCCCCCCCCCCCcCC
Q 001373 593 MMDPTSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKPPRKTCN 672 (1091)
Q Consensus 593 f~Dp~~g~~va~VQ~PQ~F~nid~~Dry~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~ 672 (1091)
|+||+.|+++|||||||+|+|+|++|+|+|++++|||++|+|+||+|||+||||||+|||+||||++|+..++.+...+.
T Consensus 479 ~~D~~~g~~va~VQ~PQ~F~~i~~~D~y~~~~~~ffd~~~~g~dglqGP~YvGTGC~fRR~ALyG~~p~~~~~~~~~~~~ 558 (977)
T PLN02195 479 LMDPVVGRDVCYVQFPQRFDGIDRSDRYANRNVVFFDVNMKGLDGIQGPVYVGTGCVFNRQALYGYGPPSLPRLPKSSSS 558 (977)
T ss_pred ccCcccCCeeEEEcCCcccCCCCCCCCCCcccceeeeeeeccccccCCccccccCceeeehhhhccCccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998876544443333
Q ss_pred CCCCccccccccccccccccC----CccCCcchhhhhhhhhhhhcccccccccccCCchhhHhhhcCCcHHHHHhhhhhh
Q 001373 673 CLPKWCCCCCRSRKKSKKGKS----NKKNKDTSKQIYALENIEEGIEGIDNEKSSLMPQIKFEKKFGQSPVFIASTLKEA 748 (1091)
Q Consensus 673 ~~~~~~~~c~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~ 748 (1091)
+| | |||+.+++..+..+ ..++.+.+.++..++++++ ..+.+++..+++++++++||+|.+|++|++.+.
T Consensus 559 ~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~fG~S~~fi~S~~~~~ 631 (977)
T PLN02195 559 SS---S-CCCPTKKKPEQDPSEIYRDAKREDLNAAIFNLREIDN---YDEYERSMLISQMSFEKTFGLSSVFIESTLMEN 631 (977)
T ss_pred cc---c-ccccccccccccchhhccccccccccccccccccccc---cchhhhhhhhhhhHHHHhhcccHHHHHHHHHHh
Confidence 33 3 35554443221111 1122233344455554432 123366778899999999999999999999999
Q ss_pred CCCCCCCChhhHHHhhhhhccccccccCccccccCcccccccchHHHHHHHHHCCcEEEEecCCCCcccccCCCCHHHHH
Q 001373 749 GGVPTGASTASLLNEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRL 828 (1091)
Q Consensus 749 GG~~~~~~~~~~l~ea~~v~sc~YE~~T~WG~evGW~ygsvTEDi~TglrLh~~GWrsvY~~p~~~AF~G~aP~tl~~~l 828 (1091)
+|.+....++++++||++|+||+||++|+||+||||.|||+|||+.||++||++||||+|++|.+++|.|+||+|+.+++
T Consensus 632 ~~~~~~~~~~~~l~eA~~V~sC~YE~~T~WG~evGw~YGSvTEDv~TG~rlH~rGWrSvY~~p~r~af~G~AP~~L~~~L 711 (977)
T PLN02195 632 GGVPESANPSTLIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWRSIYCMPVRPAFKGSAPINLSDRL 711 (977)
T ss_pred cCCCCCCCcHHHHHHHHhhhcccCccccchhhhcCeeccceecHHHHHHHHHccCCcEEecCCccHHhcccCCCCHHHHH
Confidence 99988888899999999999999999999999999999999999999999999999999999988899999999999999
Q ss_pred HHHHHHhhcchHHHhhhccccccccC-CCCCccccchhhhhhhHHhHHHHHHHHHHHHHHHHHhCCcccccchhHHHHHH
Q 001373 829 HQVLRWALGSVEILLSRHCPIWYGYG-CGLKPLERFSYINSVVYPITSIPLIAYCTLPAICLLTGKFIVPEISNYASILF 907 (1091)
Q Consensus 829 ~QR~RWA~G~lQil~sk~~Pl~~g~~-~~L~~~QRL~Yl~~~ly~l~sl~~liylllP~l~Ll~G~~iip~~s~~~~i~f 907 (1091)
.||+|||+|++||++++++|+++|+. ++|+++||++|+++++||++++++++|+++|++||++|++++|.++.+++++|
T Consensus 712 ~Qr~RWA~G~lqI~~sr~nPl~~g~~~~~L~~~QRL~Yl~~~ly~~~slp~liY~~lP~l~Ll~G~~i~P~vs~~~~~~f 791 (977)
T PLN02195 712 HQVLRWALGSVEIFLSRHCPLWYGYGGGRLKWLQRLAYINTIVYPFTSLPLIAYCTLPAICLLTGKFIIPTLSNLASMLF 791 (977)
T ss_pred HHHHHHHhchhhhhhccCCccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeecccchHHHHHHH
Confidence 99999999999999999999998763 78999999999999999999999999999999999999999999988888999
Q ss_pred HHHHHHHHHHHHHHhhccCcccccccchhhHHHhhhhHHHHHHHHHHHHHHhcCCccceeeCCCCCCCCccccceecccc
Q 001373 908 MALFISIAATGILEMQWGGVGIHDWWRNEQFWVIGGASSHLFALIQGLLKVVGGVNTNFTVTSKAADDGEFSDLYLFKWT 987 (1091)
Q Consensus 908 i~lfls~~~~~lLe~~wsG~si~~wWrne~~W~I~~~sa~lfAv~~aLlk~L~g~~~~F~VTpKg~~~~~~~~ly~f~ws 987 (1091)
+++|+++++++++|++|+|.++++||||||||+|.++|+|+||++++++|+|++++++|+||+|..++++++++|+|+||
T Consensus 792 ~~lfl~~~~~~~lE~~~sG~si~~WWrnqq~w~I~~tSa~Lfavl~~llKvLggs~~~F~VTsK~~dd~~~~~~Y~f~~S 871 (977)
T PLN02195 792 LGLFISIILTSVLELRWSGVSIEDLWRNEQFWVIGGVSAHLFAVFQGFLKMLAGLDTNFTVTAKAADDTEFGELYMVKWT 871 (977)
T ss_pred HHHHHHHHHHHHHHHHhcccCHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHcCCCccceeccccccccchhcceeccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999887788999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHh
Q 001373 988 SLLIPPLTLLVFNLIGVIIGVADAISNGYETWGPLFGKLFFSLWVILHLYPFLKGFLGKQDRLPTILLVWAILLASIFSL 1067 (1091)
Q Consensus 988 ~L~iP~~~Llilnlvaiv~gi~r~i~~g~~~wg~l~g~lf~~~Wvvv~l~Pfl~gL~gR~~r~P~~v~~~s~~la~~f~~ 1067 (1091)
++++|+++++++|++|+++|+++++++++++|+++++++|+++|+++|+|||++|||||++|+||||++||++||++|||
T Consensus 872 ~l~iP~ttl~ilNlvaiv~g~~~~i~~~~~~~g~l~~~~~~~~wvv~~~~Pf~kgl~gR~~r~P~~v~v~s~ll~~~~~l 951 (977)
T PLN02195 872 TLLIPPTSLLIINLVGVVAGFSDALNKGYEAWGPLFGKVFFAFWVILHLYPFLKGLMGRQNRTPTIVVLWSVLLASVFSL 951 (977)
T ss_pred ehhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCeeehHHHHHHHHHHHH
Confidence 99999999999999999999999999899999999999999999999999999999999999999999999999999999
Q ss_pred heeeecCCCCC-CCcc-cccc-CCCC
Q 001373 1068 LWARVNPFVSK-GDIV-LEVC-GLDC 1090 (1091)
Q Consensus 1068 l~v~~~~~~~~-~~~~-~~~~-~~~~ 1090 (1091)
|||+||||+++ +||+ +++| |++|
T Consensus 952 ~~v~~~~~~~~~~~~~~~~~~~~~~~ 977 (977)
T PLN02195 952 VWVKINPFVGKTDTTTLSNNCISIDC 977 (977)
T ss_pred HHeeccccccCCCCCchhhccCCCCC
Confidence 99999999999 9999 9999 9999
No 7
>PLN02248 cellulose synthase-like protein
Probab=100.00 E-value=9.3e-252 Score=2241.27 Aligned_cols=951 Identities=50% Similarity=0.923 Sum_probs=826.5
Q ss_pred CCcccccccC---CceEEEeecccccccccccccCCccccc--cCccccccCCCCccccCCCCCCCcchhhHHHHHhhcC
Q 001373 4 NGRLVAGSHN---RNEFVLINADEVARVTSVKELSGQICQI--CGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGN 78 (1091)
Q Consensus 4 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~C~i--Cgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~ 78 (1091)
+++||||+|| |+|+|++..|++..|+++.+..+..|.+ |+.+++.+++|+...+| ||+|.|||+||-++.++|
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~- 166 (1135)
T PLN02248 89 SNSIFTGGFNSVTRAHLMDKVIESEVSHPQMAGAKGSSCAMPGCDGKVMRDERGEDLLPC-ECGFKICRDCYIDAVKSG- 166 (1135)
T ss_pred ccceecCCCCccchhhhhhcccccccCCcccCCCCCCcccccCcccccccccccccCCcc-cccchhHHhHhhhhhhcC-
Confidence 6789999999 9999999999999999999999999998 99999999999999999 999999999999999996
Q ss_pred CCCCCChhhcccccCCCCCCCCCCCCCccccccccccCCCCCchhhHHHhhhhccccCCCCCcccccccCCCcccccccc
Q 001373 79 QACPQCKTRYKRIKGSPRVDGDEEEDDTDDLENEFDINDRKDPHHIAEAMLSSRLNIGRGSQAYVSGITTPSEVDSVSVA 158 (1091)
Q Consensus 79 ~~CpqCkt~Ykr~kgsprv~gd~ee~~~dd~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (1091)
+.||+||++||.+ |+++++ +| ++ .+. .. ++. .. +.+.++. .|+.
T Consensus 167 ~~~~~~~~~~~~~--------~~~~~~-~~----~~--~~~--~~----~~~--~~-~~~~~~~------------~~~~ 210 (1135)
T PLN02248 167 GICPGCKEPYKVT--------DLDDEV-PD----ES--SGA--LP----LPP--PG-GSKMDRR------------LSLM 210 (1135)
T ss_pred CCCCCCccccccc--------cccccc-cc----cc--ccc--cc----CCC--CC-Ccccccc------------cccc
Confidence 7999999999776 332222 21 11 111 11 111 00 0000000 0000
Q ss_pred -CCCcccccCCCCCCCCCcCcccccCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCccccCccccccchhhHHHHHhhh
Q 001373 159 -QEIPLLTYGNEDVGISSDKHALIIPPFMGRGKRIHPMSFPDGFMTLPPRPMDPKKDLAVYGYGTVAWKERMEEWKKKQN 237 (1091)
Q Consensus 159 -~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 237 (1091)
++-.+..+++|||| |+ ||++++| ++|||||+.|++...
T Consensus 211 ~~~~~~~~~~~~~~~-----~~---------------------------~w~~~~~--~~~~~~~~~~~~~~~------- 249 (1135)
T PLN02248 211 KSNSLLMRSQTGDFD-----HN---------------------------RWLFETK--GTYGYGNAVWPKDDG------- 249 (1135)
T ss_pred cccchhccCCCCCCC-----Cc---------------------------eeeeecc--cccccccccCccccc-------
Confidence 10111224458887 65 9999999 999999999998642
Q ss_pred hhhhhcccCCCCCCCCCCCCCCCCCCCcCccCCCCCceeeeecCCCCcchhHHHHHHHHHHHHHhhhhhccccccchhhH
Q 001373 238 EKLQVVKHQGGNGGGNNDGDGVDDPDLPMMDEGRQPLSRKLPISSSKISPYRLIILLRLVILGLFFHYRILHPVNDAYGL 317 (1091)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~yR~~i~~~l~~l~~~l~wRi~~~~~~a~~l 317 (1091)
.|+++ + +.. ...+||++|+||+||+++++++|+|||++++++|+++++||+||++|++.+++|+
T Consensus 250 --------~~~~~----~--~~~--~~~~~~~~~~pL~~~~~i~~~il~pyRl~~~~rlv~l~~fl~~Ri~~~~~~~~~~ 313 (1135)
T PLN02248 250 --------YGDDG----G--GGG--PGEFMDKPWRPLTRKVKISAAILSPYRLLILIRLVVLGLFLTWRVRNPNEDAMWL 313 (1135)
T ss_pred --------cCCCC----C--ccc--cccccccCCCCceeeeecCcccccHHHHHHHHHHHHHHHHHHHHhcCCCCcchHH
Confidence 12211 0 011 1146899999999999999999999999999999999999999999999899999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCcccccccchhhhHhhhhhccCC-----CCCCCCceeEEEecCCCCCCCHHHHHHHHHHH
Q 001373 318 WLTSVICEIWFAVSWILDQFPKWDPIVRETYLDRLSLRYEKEG-----KPSDLADIDIFVSTVDPMKEPPLITANTVLSI 392 (1091)
Q Consensus 318 wl~~~~~Ei~f~~~wiL~q~~kw~Pv~R~~~~~rL~~r~~~~~-----~~~~lP~VDvfV~T~dP~kEPp~v~~nTvls~ 392 (1091)
|+++++||+||+|+|+|+|++||+||+|.||+|||++|||.|+ ++++||+|||||||+||+||||++|+||||||
T Consensus 314 W~~s~~cE~WFaf~Wll~q~~Kw~Pv~R~t~~~rL~~r~e~~~~~~p~g~s~LP~vDvFV~TADP~kEPPl~t~NTVLSi 393 (1135)
T PLN02248 314 WGMSVVCEIWFAFSWLLDQLPKLCPINRATDLAVLKEKFETPSPSNPTGRSDLPGIDVFVSTADPEKEPPLVTANTILSI 393 (1135)
T ss_pred HHHHHHHHHHHHHHHHHhccccccccccccCHHHHHHHhccccccCCCCcccCCcceeEeecCCCccCcchHHHHHHHHH
Confidence 9999999999999999999999999999999999999998643 46789999999999999999999999999999
Q ss_pred HcCCCCCCCcEEEEcCCCchhhhHHHHhhhHHHhhhhhhhhhhcCCCCCCchhhhhhccccccCCCCchHHHHHHHHHHH
Q 001373 393 LAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRAPEWYFAQKLDYLKDKVNPSFIRERRAMKRE 472 (1091)
Q Consensus 393 la~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFCkk~~iepRaPe~YFs~~~d~~~~~~~~~f~~err~mkre 472 (1091)
||+|||+|||+|||||||+|+||||||.|||+|||+||||||||+|||||||+||++|.|+++++.+|+|++|||+||||
T Consensus 394 LA~DYP~eKLacYvSDDGgS~LTf~AL~EAa~FA~~WVPFCrKh~IepRaPe~YFs~~~~~~~~~~~~~F~~d~r~~Kre 473 (1135)
T PLN02248 394 LAADYPVEKLACYLSDDGGALLTFEAMAEAASFARIWVPFCRKHDIEPRNPESYFSLKRDPTKNKVRPDFVKDRRRVKRE 473 (1135)
T ss_pred hcccccccceeEEEecCCchHHHHHHHHHHHHHHHhhcchhhhcCCCcCCHHHHhccCCCcccCccchhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh------------------------------hccCCCCccccCCCCCCCCCC--------CCCCchh
Q 001373 473 YEEFKVRINGLVAM------------------------------AQKVPEDGWTMQDGTPWPGNN--------VRDHPGM 514 (1091)
Q Consensus 473 Yee~k~rI~~l~~~------------------------------~~~~p~~~w~m~dg~~w~g~~--------~rdHp~i 514 (1091)
|||||+|||+|++. .+++|+++| |+|||+|||+| ++|||+|
T Consensus 474 Yee~K~RIe~l~~~~~~rs~~~n~~~e~~~~~~~~~~~~~~~~e~~~~~~~~w-m~dgt~wpg~W~~~~~~~~~~dH~~I 552 (1135)
T PLN02248 474 YDEFKVRINGLPDSIRRRSDAYNAREEIKAKKKQRESGGGDPSEPLKVPKATW-MADGTHWPGTWLSSAPDHSRGDHAGI 552 (1135)
T ss_pred HHHHHHHHHhhhhhccccccccchhHHHHhhhhhhhhccccccccccccccee-eccCCcCCCcccCcccCCCCCCCcce
Confidence 99999999999641 245788999 99999999994 4699999
Q ss_pred hhhhhcCCC------------Cccc--cCCccCcEEEEeccCCCCCCCCCcchhhHHHHHhhccccCCCEEEEecCCCCC
Q 001373 515 IQVFLGQNG------------VRDI--EGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYI 580 (1091)
Q Consensus 515 iqv~l~~~g------------~~d~--~~~~lP~lvYvsRekRpg~~hh~KAGalNallrvSav~tngp~Il~lDcD~~~ 580 (1091)
|||||++++ ..|. .+++||+|||||||||||++||+||||||+|+||||+|||||||||||||||+
T Consensus 553 IqVll~~p~~e~~~g~~~~~~~~d~~~~d~~lP~LVYVSREKRPg~~Hh~KAGAMNALlRVSavmTNgPfILNLDCDmYi 632 (1135)
T PLN02248 553 IQVMLKPPSDEPLMGSADDENLIDFTDVDIRLPMLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYI 632 (1135)
T ss_pred eEEeccCCCcccccCcccccccccccccccccceeEEEecccCCCCCcccccchhhhHHHhhhhccCCCeEEEeccCccc
Confidence 999998753 1122 24589999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHhhcCCCCCcceEEEecceeecCCCccccccchhhhhhhhhccccccCCCccccccccchhhhhhcCCCC
Q 001373 581 NNSKALREAMCFMMDPTSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDA 660 (1091)
Q Consensus 581 ~~p~~Lr~amcff~Dp~~g~~va~VQ~PQ~F~nid~~Dry~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p 660 (1091)
|||++||+||||||||+ |+++|||||||+|+|+|++|||+||++||||++|+|+||+|||+||||||+|||+||||++|
T Consensus 633 Nns~alr~AMCf~lD~~-g~~vAfVQFPQrF~~I~k~D~Ygn~~~Vffdi~~~GlDGlqGP~YvGTGCffRR~ALYG~~p 711 (1135)
T PLN02248 633 YNSLAIREGMCFMMDRG-GDRICYVQFPQRFEGIDPSDRYANHNTVFFDVNMRALDGLQGPVYVGTGCLFRRIALYGFDP 711 (1135)
T ss_pred CCchhHHhcchheecCC-CCceEEEcCCcccCCCCCCCccCCcceeeeeeeeccccccCCccccccCceeeehhhcCcCC
Confidence 99999999999999997 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcCCCCCCccccccccccccccccCCccCCcchhhhhhhhhhhhcccccccccccCCchhhHhhhcCCcHHH
Q 001373 661 PVKKKPPRKTCNCLPKWCCCCCRSRKKSKKGKSNKKNKDTSKQIYALENIEEGIEGIDNEKSSLMPQIKFEKKFGQSPVF 740 (1091)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f 740 (1091)
|..++.. .++++||+.++++++.+. . .+ ..+++++ .++ .++.+.++++||+|..|
T Consensus 712 p~~~~~~--------~~~~~~~~~~~~~~~~~~---~----~~-~~~~~~~-----~~~----~~~~~~~~~rfG~S~~f 766 (1135)
T PLN02248 712 PRAKEHS--------GCFGSCKFTKKKKKETSA---S----EP-EEQPDLE-----DDD----DLELSLLPKRFGNSTMF 766 (1135)
T ss_pred ccccccc--------cccccccccccccccccc---c----cc-ccccccc-----ccc----hhhhhhhhhhhccchhh
Confidence 8754321 223445555443211100 0 00 0011111 111 13567789999999999
Q ss_pred HHhhhh-hhCCCCC-------------------CCChhhHHHhhhhhccccccccCccccccCcccccccchHHHHHHHH
Q 001373 741 IASTLK-EAGGVPT-------------------GASTASLLNEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMH 800 (1091)
Q Consensus 741 ~~S~l~-e~GG~~~-------------------~~~~~~~l~ea~~v~sc~YE~~T~WG~evGW~ygsvTEDi~TglrLh 800 (1091)
++|+.. +..|.+. ...++++++||++|+||+||++|+||+||||.|+|+|||+.||++||
T Consensus 767 i~S~~~a~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~eA~~V~sC~YE~~T~WG~evG~~YGSvTEDv~TGlrLH 846 (1135)
T PLN02248 767 AASIPVAEFQGRPLADHPSVKNGRPPGALTVPREPLDAATVAEAISVISCWYEDKTEWGDRVGWIYGSVTEDVVTGYRMH 846 (1135)
T ss_pred hhhhHHHhhcccccccccccccccccccccccccCCcHHHHHHHHhhcccccccCCchhhhcCeeecceechHHHHHHHH
Confidence 999953 2232221 12356899999999999999999999999999999999999999999
Q ss_pred HCCcEEEEecCCCCcccccCCCCHHHHHHHHHHHhhcchHHHhhhccccccccCCCCCccccchhhhhhhHHhHHHHHHH
Q 001373 801 CHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEILLSRHCPIWYGYGCGLKPLERFSYINSVVYPITSIPLIA 880 (1091)
Q Consensus 801 ~~GWrsvY~~p~~~AF~G~aP~tl~~~l~QR~RWA~G~lQil~sk~~Pl~~g~~~~L~~~QRL~Yl~~~ly~l~sl~~li 880 (1091)
++||||+||+|++.+|.|++|+|+.++++||+|||+|++||++++++|+++ .++|+++||++|+++++||++++++++
T Consensus 847 ~rGWrSvY~~p~r~AF~GlAP~~L~d~L~Qr~RWA~G~lQIf~sr~~Pll~--~~~Lsl~QRL~Yl~~~lypf~Slp~li 924 (1135)
T PLN02248 847 NRGWRSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALLA--SRRLKFLQRIAYLNVGIYPFTSIFLIV 924 (1135)
T ss_pred hcCCceEeCCCChHhhcCCCCCCHHHHHHHHHHHhhchHHHHhccCCcccc--CCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999985 478999999999999999999999999
Q ss_pred HHHHHHHHHHhCCcccccchhHHHHHHHHHHHHHHHHHHHHhhccCcccccccchhhHHHhhhhHHHHHHHHHHHHHHhc
Q 001373 881 YCTLPAICLLTGKFIVPEISNYASILFMALFISIAATGILEMQWGGVGIHDWWRNEQFWVIGGASSHLFALIQGLLKVVG 960 (1091)
Q Consensus 881 ylllP~l~Ll~G~~iip~~s~~~~i~fi~lfls~~~~~lLe~~wsG~si~~wWrne~~W~I~~~sa~lfAv~~aLlk~L~ 960 (1091)
|+++|++||++|++++|+.+..++++++.++++++++.++|++|+|+++++||||||||+|.++++|++|++++++|+|+
T Consensus 925 Y~llP~l~LLtGi~~~p~~~~~fl~yll~l~l~~~~~sllE~~wsGvsl~~WWrnQq~W~I~~tSA~L~A~l~aiLKvLg 1004 (1135)
T PLN02248 925 YCFLPALSLFSGQFIVQTLNVTFLVYLLIITITLCLLAVLEIKWSGITLEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIA 1004 (1135)
T ss_pred HHHHHHHHHHcCCcccccccHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHhhhhheeeehhhHHHHHHHHHHHHHHhc
Confidence 99999999999999999876555555556678889999999999999999999999999999999999999999999999
Q ss_pred CCccceeeCCCCCCCC---ccccceecccccchHHHHHHHHHHHHHHHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHH
Q 001373 961 GVNTNFTVTSKAADDG---EFSDLYLFKWTSLLIPPLTLLVFNLIGVIIGVADAISNGYETWGPLFGKLFFSLWVILHLY 1037 (1091)
Q Consensus 961 g~~~~F~VTpKg~~~~---~~~~ly~f~ws~L~iP~~~Llilnlvaiv~gi~r~i~~g~~~wg~l~g~lf~~~Wvvv~l~ 1037 (1091)
+++++|+||+|..+++ +++++|+|+|+++++|+++++++|++|+++|++|++.++++.|+++++++|+++|+++|+|
T Consensus 1005 gs~~~F~VTsK~~~~d~~~~~a~ly~f~wS~L~iP~ttl~llNLvAivvGv~R~i~g~~~~~~~l~g~l~~s~Wvv~~ly 1084 (1135)
T PLN02248 1005 GIEISFTLTSKSAGDDEDDEFADLYIVKWTSLMIPPITIMMVNLIAIAVGVSRTIYSEIPQWSKLLGGVFFSFWVLAHLY 1084 (1135)
T ss_pred CccccceeCCcccccccccccchheecCcchHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHHHH
Confidence 9999999999987533 5688999999999999999999999999999999998878889999999999999999999
Q ss_pred HHHHHhhcCCCCcchhHHHHHHHHHHHHHhheeeecCCCCC
Q 001373 1038 PFLKGFLGKQDRLPTILLVWAILLASIFSLLWARVNPFVSK 1078 (1091)
Q Consensus 1038 Pfl~gL~gR~~r~P~~v~~~s~~la~~f~~l~v~~~~~~~~ 1078 (1091)
||++|||||++|+||||+|||++|++++|||||+|+||+..
T Consensus 1085 Pf~kGL~gR~gr~P~iv~v~s~ll~~~~sll~v~~~~~~~~ 1125 (1135)
T PLN02248 1085 PFAKGLMGRRGRTPTIVYVWSGLLSITISLLWVAISPPSGA 1125 (1135)
T ss_pred HHHHHHhccCCCCCeehHHHHHHHHHHHHHHheEeccccCc
Confidence 99999999999999999999999999999999999999854
No 8
>PF03552 Cellulose_synt: Cellulose synthase; InterPro: IPR005150 Cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues, is the major component of wood and thus paper, and is synthesized by plants, most algae, some bacteria and fungi, and even some animals. The genes that synthesize cellulose in higher plants differ greatly from the well-characterised genes found in Acetobacter and Agrobacterium spp. More correctly designated as "cellulose synthase catalytic subunits", plant cellulose synthase (CesA) proteins are integral membrane proteins, approximately 1,000 amino acids in length. There are a number of highly conserved residues, including several motifs shown to be necessary for processive glycosyltransferase activity [].; GO: 0016760 cellulose synthase (UDP-forming) activity, 0030244 cellulose biosynthetic process, 0016020 membrane
Probab=100.00 E-value=1.2e-218 Score=1908.66 Aligned_cols=712 Identities=68% Similarity=1.262 Sum_probs=683.5
Q ss_pred eeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCchhhhHHHHhhhHHHhhhhhhhhhhcCCCCCCchhhh
Q 001373 368 IDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRAPEWYF 447 (1091)
Q Consensus 368 VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFCkk~~iepRaPe~YF 447 (1091)
|||||||+||.||||++|+|||||+||+|||+|||+|||||||+|+||||||.|||+|||+||||||||+|||||||+||
T Consensus 1 vDvFv~TaDP~~EPp~~~~nTvLS~lA~dYP~~kls~YvSDDg~s~ltf~al~Ea~~FA~~WvPFCkk~~ie~R~P~~YF 80 (720)
T PF03552_consen 1 VDVFVCTADPEKEPPLVTANTVLSILAYDYPVEKLSCYVSDDGGSMLTFYALMEAAKFAKHWVPFCKKYNIEPRAPEAYF 80 (720)
T ss_pred CceEEecCCCCcCCCeeeHHHHHHHHhhcCCccceeEEEecCCchHHHHHHHHHHHHHHhhhcchhhccCCccCCHHHHh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCCCCCCCCCchhhhhhhcCCCCccc
Q 001373 448 AQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVRDI 527 (1091)
Q Consensus 448 s~~~d~~~~~~~~~f~~err~mkreYee~k~rI~~l~~~~~~~p~~~w~m~dg~~w~g~~~rdHp~iiqv~l~~~g~~d~ 527 (1091)
+++.|+++++.+|+|++|||+|||||||||+|||+++++.+++|+++|+|+||++|||++++|||+|||||++++++.|.
T Consensus 81 ~~~~~~~~~~~~~~f~~e~~~~k~~ye~~k~ri~~~~~~~~~~~~~~~~~~~~~~w~~~~~~dH~~iiqv~~~~~~~~~~ 160 (720)
T PF03552_consen 81 SSKIDPLKDKVQPEFVKERRAMKREYEEFKVRIEALVAKIQKVPEEGWTMQDGTPWPGNTRRDHPGIIQVLLDNPGGKDV 160 (720)
T ss_pred ccCCCcccCCcChhHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccceeccCCCcCCCCCCcCChhheEeeccCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccCcEEEEeccCCCCCCCCCcchhhHHHHHhhccccCCCEEEEecCCCCCCcHHHHHHHHHhhcCCCCCcceEEEec
Q 001373 528 EGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQF 607 (1091)
Q Consensus 528 ~~~~lP~lvYvsRekRpg~~hh~KAGalNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~va~VQ~ 607 (1091)
+|++||+||||||||||+++||+||||||+|+||||+|||||||||||||||+|||+++|+||||||||+.|+++|||||
T Consensus 161 ~g~~lP~lvYvsREKrp~~~Hh~KAGAmNaL~RvSa~~tN~p~iLnlDcD~y~nn~~~~~~amc~~~d~~~g~~~~~vQf 240 (720)
T PF03552_consen 161 DGNELPMLVYVSREKRPGYPHHFKAGAMNALLRVSAVMTNAPFILNLDCDMYINNSQALREAMCFFMDPKIGKKIAFVQF 240 (720)
T ss_pred ccCcCCeEEEEeccCCCCCCchhhhcccccccccceeecCCCEEEEecccccccchHHHHHHHHhhccCCCCCeeEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeecCCCccccccchhhhhhhhhccccccCCCccccccccchhhhhhcCCCCCCCCCCCCCcCCCCCCccccccccccc
Q 001373 608 PQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKPPRKTCNCLPKWCCCCCRSRKK 687 (1091)
Q Consensus 608 PQ~F~nid~~Dry~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~c~~~~~~ 687 (1091)
||+|+|+|++|+|+|++++||+++|+|+||+|||+||||||+|||+||||++||...+..+.++ +|++||.+++|
T Consensus 241 pq~f~~i~~~d~y~~~~~~~~~~~~~g~dG~~gp~y~Gtgc~~rR~al~g~~~~~~~~~~~~~~-----~~~~~c~~~~k 315 (720)
T PF03552_consen 241 PQRFDGIDKNDRYGNQNRVFFDINMRGLDGLQGPFYVGTGCFFRREALYGFDPPRYEKDPEKTC-----CCCSCCFGRRK 315 (720)
T ss_pred CceeCCCCcCCCCCccceeeeeccccccccCCCceeeecCcceechhhhCCCCCchhcccCcce-----eeeecccCCcc
Confidence 9999999999999999999999999999999999999999999999999999998777655443 34445544444
Q ss_pred cccccCC-----ccCCcchhhhhhhhhhhhcccccccccccCCchhhHhhhcCCcHHHHHhhhhhhCCCCCCCChhhHHH
Q 001373 688 SKKGKSN-----KKNKDTSKQIYALENIEEGIEGIDNEKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGASTASLLN 762 (1091)
Q Consensus 688 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~~~~~~~~~~l~ 762 (1091)
+++.+++ .++.+.+.+++++++++++.++.+++++..+++++|+++||+|++|++|+..+.|+.+...+++++|+
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~FG~S~~fi~S~~~~~~~~~~~~~~~~~L~ 395 (720)
T PF03552_consen 316 KKKSKKKPKKRASKRRESSSPIFALEDIEEGAEGSDEERSSLMSQKELEKKFGQSPEFIASTLMAQGGVPRSPSPASLLE 395 (720)
T ss_pred cccccccchhccccccccccccccccccccccccchhhhhhcchhHHHHHHhcCCHHHHHHHHHHhcCCCCCCChHHHHH
Confidence 3332221 14567888999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccccccccCccccccCcccccccchHHHHHHHHHCCcEEEEecCCCCcccccCCCCHHHHHHHHHHHhhcchHHH
Q 001373 763 EAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEIL 842 (1091)
Q Consensus 763 ea~~v~sc~YE~~T~WG~evGW~ygsvTEDi~TglrLh~~GWrsvY~~p~~~AF~G~aP~tl~~~l~QR~RWA~G~lQil 842 (1091)
||+||+||+||++|+|||||||.|||+|||+.||++||++||||+||+|+++||.|.||+|+.+.+.|++|||.|++||+
T Consensus 396 EA~~V~sC~YE~~T~WGkevGwiYGSvtEDv~TG~rmH~rGWrSvYc~p~r~AF~G~AP~nL~d~L~Q~~RWA~GslEI~ 475 (720)
T PF03552_consen 396 EAIHVASCGYEDKTEWGKEVGWIYGSVTEDVLTGFRMHCRGWRSVYCNPKRPAFLGSAPINLSDRLHQVKRWATGSLEIF 475 (720)
T ss_pred HHHHHhcCCccccCCcccccceEEEecccccccceeEeeCceeeEEeccccchhcccCCCChhhhceeeeeEeeeeEeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccccccCCCCCccccchhhhhhhHHhHHHHHHHHHHHHHHHHHhCCcccccchhHHHHHHHHHHHHHHHHHHHHh
Q 001373 843 LSRHCPIWYGYGCGLKPLERFSYINSVVYPITSIPLIAYCTLPAICLLTGKFIVPEISNYASILFMALFISIAATGILEM 922 (1091)
Q Consensus 843 ~sk~~Pl~~g~~~~L~~~QRL~Yl~~~ly~l~sl~~liylllP~l~Ll~G~~iip~~s~~~~i~fi~lfls~~~~~lLe~ 922 (1091)
++||||+|+|+.++|+++||++|++.++|+++++|.++|+++|++||++|++++|++++.++++|+++|+++++++++|+
T Consensus 476 fSr~~Pl~~g~~~rL~~lQrLaY~~~~~ypl~Sipll~Y~~lPalcLLtG~~i~Pk~s~~~~~~f~~lf~~~~~~~llE~ 555 (720)
T PF03552_consen 476 FSRHCPLWYGYGGRLKFLQRLAYLNYMLYPLTSIPLLCYCFLPALCLLTGIFIFPKVSSPWFIYFLALFVSIYAYSLLEF 555 (720)
T ss_pred hhcCCchhccCCCCCcHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHhhCCCcccCccccchhHHHHHHHHHHHHHHHHHH
Confidence 99999999987789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCcccccccchhhHHHhhhhHHHHHHHHHHHHHHhcCCccceeeCCCCCC--CCccccceecccccchHHHHHHHHHH
Q 001373 923 QWGGVGIHDWWRNEQFWVIGGASSHLFALIQGLLKVVGGVNTNFTVTSKAAD--DGEFSDLYLFKWTSLLIPPLTLLVFN 1000 (1091)
Q Consensus 923 ~wsG~si~~wWrne~~W~I~~~sa~lfAv~~aLlk~L~g~~~~F~VTpKg~~--~~~~~~ly~f~ws~L~iP~~~Lliln 1000 (1091)
+|+|+++++||||||||+|.++++|+||++++++|+|++++++|+||+|..+ ++++.|+|+|+|+++++|+++|+++|
T Consensus 556 ~wsG~si~~WWrnQq~W~I~~tSa~LfAvl~~iLK~lg~s~t~F~VTsK~~dde~~~~~ely~f~wS~LfiP~tTllilN 635 (720)
T PF03552_consen 556 RWSGVSIREWWRNQQFWMIGGTSAHLFAVLQGILKVLGGSETSFTVTSKVSDDEDDKYAELYIFKWSPLFIPPTTLLILN 635 (720)
T ss_pred HhccCcHHHhhcccceeeehhhHHHHHHHHHHHHHHHcCCccceeecccccccccccccccccccccchhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999876 45567899999999999999999999
Q ss_pred HHHHHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHhheeeecCCCCC-C
Q 001373 1001 LIGVIIGVADAISNGYETWGPLFGKLFFSLWVILHLYPFLKGFLGKQDRLPTILLVWAILLASIFSLLWARVNPFVSK-G 1079 (1091)
Q Consensus 1001 lvaiv~gi~r~i~~g~~~wg~l~g~lf~~~Wvvv~l~Pfl~gL~gR~~r~P~~v~~~s~~la~~f~~l~v~~~~~~~~-~ 1079 (1091)
++|+++|+++++++++++|+++++++|+++|+++|+|||++|||||++|+||||++||++||++|+||||+||||++| +
T Consensus 636 Lva~v~Gi~r~i~~g~~~~g~l~g~lf~~~wVvv~lyPf~kGL~~R~~r~P~~v~v~S~lla~i~~llwv~i~~~~~~~~ 715 (720)
T PF03552_consen 636 LVAFVVGISRAINSGYGSWGPLLGQLFFSFWVVVHLYPFLKGLFGRKDRIPTSVIVWSVLLASIFSLLWVRIDPFLAKTT 715 (720)
T ss_pred HHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHhhHHHHhhhcccCCcceeehHHHHHHHHHHHHHheecccCcCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred Ccccc
Q 001373 1080 DIVLE 1084 (1091)
Q Consensus 1080 ~~~~~ 1084 (1091)
||+++
T Consensus 716 ~~~~~ 720 (720)
T PF03552_consen 716 GPDLK 720 (720)
T ss_pred CCCCC
Confidence 99875
No 9
>PLN02190 cellulose synthase-like protein
Probab=100.00 E-value=6.5e-202 Score=1769.72 Aligned_cols=725 Identities=34% Similarity=0.613 Sum_probs=657.4
Q ss_pred CCCCceeeeecCCCCcchhHHHHHHHHHHHHHhhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhcCcccccccchhh
Q 001373 270 GRQPLSRKLPISSSKISPYRLIILLRLVILGLFFHYRILHPVNDAYGLWLTSVICEIWFAVSWILDQFPKWDPIVRETYL 349 (1091)
Q Consensus 270 ~~~pl~~~~~~~~~~~~~yR~~i~~~l~~l~~~l~wRi~~~~~~a~~lwl~~~~~Ei~f~~~wiL~q~~kw~Pv~R~~~~ 349 (1091)
+.+||++++++++++ ||++.+++++++++||+||++|+++++ ++|+++++||+||+|+|+|+|++||+|++|.|++
T Consensus 7 ~~~pL~~~~~~~~~~---~r~~~~~vl~~~~~~l~~R~~~~~~~~-~~W~~~~~~E~wf~~~WlL~q~~kw~pv~r~~~p 82 (756)
T PLN02190 7 SLPPLCERISHKSYF---LRAVDLTILGLLFSLLLYRILHMSEND-TVWLVAFLCESCFSFVWLLITCIKWSPAEYKPYP 82 (756)
T ss_pred CCCCceeeeeccchh---HHHHHHHHHHHHHHHHHHHHhCCCccc-HHHHHHHHHHHHHHHHHHHhccceeeecCCCCCc
Confidence 457999999999985 899999999999999999999999887 6899999999999999999999999999999999
Q ss_pred hHhhhhhccCCCCCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCchhhhHHHHhhhHHHhhhh
Q 001373 350 DRLSLRYEKEGKPSDLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKW 429 (1091)
Q Consensus 350 ~rL~~r~~~~~~~~~lP~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~W 429 (1091)
|||++|++ +||+|||||||+||.||||++|+|||||+||+|||+|||+|||||||+|+||||||.|||+|||+|
T Consensus 83 ~~l~~r~~------~Lp~VDvFV~TaDP~kEPpl~v~nTvLSilA~dYP~eklscYvSDDG~s~LT~~al~EAa~FA~~W 156 (756)
T PLN02190 83 DRLDERVH------DLPSVDMFVPTADPVREPPIIVVNTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLKEASKFAKIW 156 (756)
T ss_pred HHHHHhhc------cCCcceEEEecCCCCcCCHHHHHHHHHHHHhccCCccccceEEecCCCcHhHHHHHHHHHHHHhhh
Confidence 99999983 699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcCCCCCCchhhhhhccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccCCC--CCCCCCC
Q 001373 430 VPFCKKFKIEPRAPEWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDG--TPWPGNN 507 (1091)
Q Consensus 430 vPFCkk~~iepRaPe~YFs~~~d~~~~~~~~~f~~err~mkreYee~k~rI~~l~~~~~~~p~~~w~m~dg--~~w~g~~ 507 (1091)
|||||||||||||||+||+++.+ ++..++|++|||+|||||||||+||++.. +...|.+.|+ .+|+++.
T Consensus 157 vPFCrK~~IepRaPe~YF~~~~~---~~~~~~f~~e~~~~K~eYee~k~ri~~a~------~~~~~~~~~~~~~~~~~~~ 227 (756)
T PLN02190 157 VPFCKKYNVRVRAPFRYFLNPPV---ATEDSEFSKDWEMTKREYEKLSRKVEDAT------GDSHWLDAEDDFEAFSNTK 227 (756)
T ss_pred cccccccCCCcCCHHHHhcCCCC---CCCCchhHHHHHHHHHHHHHHHHHHHhhc------cCCCCcccCCcccccCCCC
Confidence 99999999999999999998643 33458999999999999999999999864 3456766655 6899989
Q ss_pred CCCCchhhhhhhcCCCCccccCCccCcEEEEeccCCCCCCCCCcchhhHHHHHhhccccCCCEEEEecCCCCCCcHHHHH
Q 001373 508 VRDHPGMIQVFLGQNGVRDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALR 587 (1091)
Q Consensus 508 ~rdHp~iiqv~l~~~g~~d~~~~~lP~lvYvsRekRpg~~hh~KAGalNallrvSav~tngp~Il~lDcD~~~~~p~~Lr 587 (1091)
++|||+|||||++++|+ +.+|++||+|||||||||||++||+||||||+|+||||+|||||||||||||||+|||+++|
T Consensus 228 ~~dH~~iiqVll~~~~~-~~~~~~lP~LVYvSREKrP~~~Hh~KAGAmNaLlRVSavmtNaP~iLnlDCDmY~Nns~~~r 306 (756)
T PLN02190 228 PNDHSTIVKVVWENKGG-VGDEKEVPHLVYISREKRPNYLHHYKAGAMNFLVRVSGLMTNAPYMLNVDCDMYANEADVVR 306 (756)
T ss_pred CCCCccceEEEecCCCC-ccccccCceEEEEeccCCCCCCcccccchhHHHHHHhhhhccCCeEEEecCccccCchhHHH
Confidence 99999999999999765 44789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCC-cceEEEecceeecCCCccccccchhhhhhhhhccccccCCCccccccccchhhhhhcCCCCCCCCCC
Q 001373 588 EAMCFMMDPTSG-KKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKP 666 (1091)
Q Consensus 588 ~amcff~Dp~~g-~~va~VQ~PQ~F~nid~~Dry~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~ 666 (1091)
+||||||||+.+ +++|||||||+|+ |+|+|+++||||++|+|+||+|||+|+||||+|||+||||++||...+.
T Consensus 307 ~AmCf~ld~~~~~~~~~fVQfPQ~F~-----D~y~n~~~v~f~~~~~GldGlqGP~YvGTGCffrR~alyG~~p~~~~~~ 381 (756)
T PLN02190 307 QAMCIFLQKSKNSNHCAFVQFPQEFY-----DSNTNELTVLQSYLGRGIAGIQGPIYIGSGCFHTRRVMYGLSSDDLEDD 381 (756)
T ss_pred HhhhhhcCCCCCCCeeEEEeCchhhc-----cccCccceEEEEEeeccccccCCcccccCCcceEeeeecCCCccccccc
Confidence 999999998744 5899999999998 7899999999999999999999999999999999999999988753221
Q ss_pred CCCcCCCCCCccccccccccccccccCCccCCcchhhhhhhhhhhhcccccccccccCCchhhHhhhcCCcHHHHHhhhh
Q 001373 667 PRKTCNCLPKWCCCCCRSRKKSKKGKSNKKNKDTSKQIYALENIEEGIEGIDNEKSSLMPQIKFEKKFGQSPVFIASTLK 746 (1091)
Q Consensus 667 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~ 746 (1091)
... .. . .++ ...++.+++++||+|+.|++|++.
T Consensus 382 ~~~------------~~-----------------------~-----------~~~-~~~~~~~~~~~fg~s~~f~~s~~~ 414 (756)
T PLN02190 382 GSL------------SS-----------------------V-----------ATR-EFLAEDSLAREFGNSKEMVKSVVD 414 (756)
T ss_pred ccc------------cc-----------------------c-----------ccc-cccchhhhhhhcCCcHHHHHHHHH
Confidence 000 00 0 001 124566788999999999999987
Q ss_pred hhCCCCC-CCChhhHHHhhhhhccccccccCccccccCcccccccchHHHHHHHHHCCcEEEEecCCCCcccccCCCCHH
Q 001373 747 EAGGVPT-GASTASLLNEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLS 825 (1091)
Q Consensus 747 e~GG~~~-~~~~~~~l~ea~~v~sc~YE~~T~WG~evGW~ygsvTEDi~TglrLh~~GWrsvY~~p~~~AF~G~aP~tl~ 825 (1091)
+..+.+. ..+.+++++||++|+||+||++|+||+||||.|+|+|||+.||++||++||||+||+|+++||.|.+|+++.
T Consensus 415 ~~~~~~~~~~~~~~~~~eA~~V~sC~YE~~T~WG~evG~~ygSitED~~TGl~mh~rGWrSvY~~p~~~AFlG~aP~~l~ 494 (756)
T PLN02190 415 ALQRKPNPQNSLTNSIEAAQEVGHCHYEYQTSWGNTIGWLYDSVAEDLNTSIGIHSRGWTSSYISPDPPAFLGSMPPGGP 494 (756)
T ss_pred HhccCCCCccchHHHHHHHHhhcccCCCCCCchhhccCcccceeechHHHHHHHHccCCceEecCCCchhhcCcCCCChH
Confidence 6644332 334578999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcchHHHhhhccccccccCCCCCccccchhhhhhhHHhHHHHHHHHHHHHHHHHHhCCcccccchhHHHH
Q 001373 826 DRLHQVLRWALGSVEILLSRHCPIWYGYGCGLKPLERFSYINSVVYPITSIPLIAYCTLPAICLLTGKFIVPEISNYASI 905 (1091)
Q Consensus 826 ~~l~QR~RWA~G~lQil~sk~~Pl~~g~~~~L~~~QRL~Yl~~~ly~l~sl~~liylllP~l~Ll~G~~iip~~s~~~~i 905 (1091)
+++.||+|||+|++||+++|+||++++..++|++.||++|++.++ |++++|+++|+++|++||++|++++|.. ++++
T Consensus 495 ~~L~Q~~RWa~G~lqI~fsr~nPl~~g~~~~L~l~QRLaYl~~~~-~~~sip~l~Y~~lP~l~Ll~g~~i~P~~--~~~~ 571 (756)
T PLN02190 495 EAMVQQRRWATGLIEVLFNKQSPLIGMFCRKIRFRQRLAYLYVFT-CLRSIPELIYCLLPAYCLLHNSALFPKG--VYLG 571 (756)
T ss_pred HHhhhhhhHhhhhHHHHHhcCCCceeccCCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCccccCc--cHHH
Confidence 999999999999999999999999976668999999999999988 9999999999999999999999999975 4567
Q ss_pred HHHHHHHHHHHHHHHHhhccCcccccccchhhHHHhhhhHHHHHHHHHHHHHHhcCCccceeeCCCCCC-----------
Q 001373 906 LFMALFISIAATGILEMQWGGVGIHDWWRNEQFWVIGGASSHLFALIQGLLKVVGGVNTNFTVTSKAAD----------- 974 (1091)
Q Consensus 906 ~fi~lfls~~~~~lLe~~wsG~si~~wWrne~~W~I~~~sa~lfAv~~aLlk~L~g~~~~F~VTpKg~~----------- 974 (1091)
+++++++.+++++++|++|+|.++++||||||||+|.++|+|++|++++++|+|++++++|+||+|..+
T Consensus 572 ~~~~l~~~~~~~~l~E~~~sG~s~~~WWnnqr~w~I~~~sa~l~a~~~~~lK~lg~s~~~F~vTsK~~~~~~~~~~~~~~ 651 (756)
T PLN02190 572 IIVTLVGMHCLYTLWEFMSLGFSVQSWYVSQSFWRIKATSSWLFSIQDIILKLLGISKTVFIVTKKTMPETKSGSGSGPS 651 (756)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcHHHHHhhhheEEeecchHHHHHHHHHHHHHhccccceEEEeeccccccccccccccc
Confidence 778888999999999999999999999999999999999999999999999999999999999999642
Q ss_pred --C--Cc--cccceecccccchHHHHHHHHHHHHHHHHHHHHHHh---cCcccchhhHHHHHHHHHHHHHHHHHHHHhhc
Q 001373 975 --D--GE--FSDLYLFKWTSLLIPPLTLLVFNLIGVIIGVADAIS---NGYETWGPLFGKLFFSLWVILHLYPFLKGFLG 1045 (1091)
Q Consensus 975 --~--~~--~~~ly~f~ws~L~iP~~~Llilnlvaiv~gi~r~i~---~g~~~wg~l~g~lf~~~Wvvv~l~Pfl~gL~g 1045 (1091)
+ ++ .+++|+|+||++++|+++++++|++|++.|+++++. ++.+.|+. ++++++++|+++|++||++|||+
T Consensus 652 ~~~~~~~~~~~~~f~f~~S~lfiP~tti~~~Nl~a~~~g~~~~~~~~~s~~~~~~~-l~q~~~~~~vv~~~~P~~~gl~~ 730 (756)
T PLN02190 652 QGEDDGPNSDSGKFEFDGSLYFLPGTFIVLVNLAALAGFLVGLQRSSYSHGGGGSG-LAEACGCILVVMLFLPFLKGLFE 730 (756)
T ss_pred cccccchhhhcceeEecceehHHHHHHHHHHHHHHHHHHHHHHhhhhhccCccccc-HHHHHHHHHHHHHHHHHHHHHhc
Confidence 1 11 257899999999999999999999999988887653 33345554 59999999999999999999997
Q ss_pred CC-CCcchhHHHHHHHHHHHHHhhee
Q 001373 1046 KQ-DRLPTILLVWAILLASIFSLLWA 1070 (1091)
Q Consensus 1046 R~-~r~P~~v~~~s~~la~~f~~l~v 1070 (1091)
|. +|+|++|+++|++|+++|+++.|
T Consensus 731 kdkg~iP~s~~~~s~~l~~~f~~~~~ 756 (756)
T PLN02190 731 KGKYGIPLSTLSKAAFLAVLFVVFSV 756 (756)
T ss_pred CCCCCCChhHHHHHHHHHHHHHhccC
Confidence 65 59999999999999999999876
No 10
>PLN02893 Cellulose synthase-like protein
Probab=100.00 E-value=1.1e-192 Score=1699.60 Aligned_cols=706 Identities=36% Similarity=0.688 Sum_probs=650.4
Q ss_pred CCCCCceeeeecCCCCcchhHHHHHHHHHHHHHhhhhhccccccch-hhHHHHHHHHHHHHHHHHHHhhcCcccccccch
Q 001373 269 EGRQPLSRKLPISSSKISPYRLIILLRLVILGLFFHYRILHPVNDA-YGLWLTSVICEIWFAVSWILDQFPKWDPIVRET 347 (1091)
Q Consensus 269 ~~~~pl~~~~~~~~~~~~~yR~~i~~~l~~l~~~l~wRi~~~~~~a-~~lwl~~~~~Ei~f~~~wiL~q~~kw~Pv~R~~ 347 (1091)
...+||+.+++++++. +||+++++++++++++|+||+++.+.+. .|+|+++++||+||+|+|+|+|++||+|++|.|
T Consensus 9 ~~~~pL~~~~~~~~~~--~~R~~~~~~~~~i~~ll~~r~~~~~~~~~~~~w~~~~~~e~wf~f~W~l~q~~k~~Pv~r~~ 86 (734)
T PLN02893 9 TGAPPLHTCHPMRRTI--ANRVFAVVYSCAILALLYHHVIALLHSTTTLITLLLLLADIVLAFMWATTQAFRMCPVHRRV 86 (734)
T ss_pred CCCCCceeeeecCCch--HHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHccCcccccccccc
Confidence 4556999999999885 5999999999999999999999876554 789999999999999999999999999999999
Q ss_pred hhhHhhhhhccCCCCCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCchhhhHHHHhhhHHHhh
Q 001373 348 YLDRLSLRYEKEGKPSDLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFAR 427 (1091)
Q Consensus 348 ~~~rL~~r~~~~~~~~~lP~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~ 427 (1091)
|+|||+++++ .++||+|||||||+||.||||++|+|||||+||+|||+|||+|||||||||+||||||.|||+|||
T Consensus 87 ~~~~L~~~~~----~~~lP~vDvfv~TaDP~~Epp~~~~ntvLSilA~dyp~~kls~YvSDDGgs~lt~~al~Eaa~FA~ 162 (734)
T PLN02893 87 FIEHLEHYAK----ESDYPGLDVFICTADPYKEPPMGVVNTALSVMAYDYPTEKLSVYVSDDGGSKLTLFAFMEAAKFAT 162 (734)
T ss_pred CHHHHhhhcc----cccCCcceeeeccCCcccCchHHHHHHHHHHHhhccCccceEEEEecCCccHHHHHHHHHHHHHHH
Confidence 9999997653 478999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhcCCCCCCchhhhhhccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccCCC-----CC
Q 001373 428 KWVPFCKKFKIEPRAPEWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDG-----TP 502 (1091)
Q Consensus 428 ~WvPFCkk~~iepRaPe~YFs~~~d~~~~~~~~~f~~err~mkreYee~k~rI~~l~~~~~~~p~~~w~m~dg-----~~ 502 (1091)
+||||||||+|||||||+||+++. ++|++|||+|||||||||+|||+++++ +++|++ |.|.++ +.
T Consensus 163 ~WvPFCrk~~ie~R~P~~YF~~~~--------~~~~~e~~~~k~~Yee~k~ri~~~~~~-~~~~~~-~~~~~~~~~~f~~ 232 (734)
T PLN02893 163 HWLPFCKKNKIVERCPEAYFSSNS--------HSWSPETEQIKMMYESMKVRVENVVER-GKVSTD-YITCDQEREAFSR 232 (734)
T ss_pred hhcccccccCCCcCCHHHHhccCC--------CccchHHHHHHHHHHHHHHHHHHHHhc-CcCchh-hhhhccccccccc
Confidence 999999999999999999999973 467899999999999999999999976 888877 655443 78
Q ss_pred CCCCC-CCCCchhhhhhhcCCCCccccCCccCcEEEEeccCCCCCCCCCcchhhHHHHHhhccccCCCEEEEecCCCCCC
Q 001373 503 WPGNN-VRDHPGMIQVFLGQNGVRDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYIN 581 (1091)
Q Consensus 503 w~g~~-~rdHp~iiqv~l~~~g~~d~~~~~lP~lvYvsRekRpg~~hh~KAGalNallrvSav~tngp~Il~lDcD~~~~ 581 (1091)
|+++. ++|||+||||+++++++.|.+|++||+|||||||||||++||+||||||+++||||+|||||||||||||||+|
T Consensus 233 w~~~~~~~dH~~ivqV~l~~~~~~d~~g~~lP~lvYvsReKrp~~~Hh~KAGaLN~llrvS~~~TngpfIl~lDcD~y~n 312 (734)
T PLN02893 233 WTDKFTRQDHPTVIQVLLESGKDKDITGHTMPNLIYVSREKSKNSPHHFKAGALNTLLRVSATMTNAPIILTLDCDMYSN 312 (734)
T ss_pred CcCCCCCCCCCceeeeeccCCCccchhhccCCceEEEeCCCCCCCCcccccchHHHHHHhhcccCCCCEEEEecCCcCCC
Confidence 98775 68999999999999988888999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhhcCCCCCcceEEEecceeecCCCccccccchhhhhhhhhccccccCCCccccccccchhhhhhcCCCCC
Q 001373 582 NSKALREAMCFMMDPTSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAP 661 (1091)
Q Consensus 582 ~p~~Lr~amcff~Dp~~g~~va~VQ~PQ~F~nid~~Dry~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~ 661 (1091)
||++||+|||||+||+.++++|||||||+|+|++++|+|+|++++||+++|+|+||+|||+||||||+|||+||||..+.
T Consensus 313 ~p~~l~~amcff~Dp~~~~~vafVQfPQ~F~~i~~~D~y~~~~~vff~~~~~glDG~~gp~y~GTGc~~RR~al~G~~~~ 392 (734)
T PLN02893 313 DPQTPLRALCYLLDPSMDPKLGYVQFPQIFHGINKNDIYAGELKRLFQINMIGMDGLAGPNYVGTGCFFRRRVFYGGPSS 392 (734)
T ss_pred chhHHHHHHHHhcCCCcCCceEEEeCcccccCCCcCCCCcchhHHHHHHHhhcccccCCceeeccceEEEHHHhcCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998431
Q ss_pred CCCCCCCCcCCCCCCccccccccccccccccCCccCCcchhhhhhhhhhhhcccccccccccCCchhhHhhhcCCcHHHH
Q 001373 662 VKKKPPRKTCNCLPKWCCCCCRSRKKSKKGKSNKKNKDTSKQIYALENIEEGIEGIDNEKSSLMPQIKFEKKFGQSPVFI 741 (1091)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~ 741 (1091)
... ++++ .+++
T Consensus 393 ~~~-------------------------------------------~~~~---------------------~~~~----- 403 (734)
T PLN02893 393 LIL-------------------------------------------PEIP---------------------ELNP----- 403 (734)
T ss_pred ccc-------------------------------------------hhhh---------------------hccc-----
Confidence 000 0000 0011
Q ss_pred HhhhhhhCCCCCCCChhhHHHhhhhhccccccccCccccccCcccccccchHHHHHHHHHCCcEEEEecCCCCcccccCC
Q 001373 742 ASTLKEAGGVPTGASTASLLNEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAP 821 (1091)
Q Consensus 742 ~S~l~e~GG~~~~~~~~~~l~ea~~v~sc~YE~~T~WG~evGW~ygsvTEDi~TglrLh~~GWrsvY~~p~~~AF~G~aP 821 (1091)
.++...+...+++++||++|+||.||++|+||+||||.|+|+|||+.||++||++|||++|++|++.+|.|++|
T Consensus 404 ------~~~~~~~~~~~~~~~~a~~v~sC~ye~~t~WG~~~G~~ygsvtED~~Tg~~lh~~GWrSvY~~p~~~af~G~aP 477 (734)
T PLN02893 404 ------DHLVDKSIKSQEVLALAHHVAGCNYENQTNWGSKMGFRYGSLVEDYYTGYRLQCEGWKSIFCNPKRPAFLGDSP 477 (734)
T ss_pred ------ccccccccchHHHHHHhhhccccccccCCccccccceEeccccccHHHHHHHHhcCCcEEecCCCchhhccCCC
Confidence 01122344567899999999999999999999999999999999999999999999999999988888999999
Q ss_pred CCHHHHHHHHHHHhhcchHHHhhhccccccccCCCCCccccchhhhhhhHHhHHHHHHHHHHHHHHHHHhCCcccccchh
Q 001373 822 INLSDRLHQVLRWALGSVEILLSRHCPIWYGYGCGLKPLERFSYINSVVYPITSIPLIAYCTLPAICLLTGKFIVPEISN 901 (1091)
Q Consensus 822 ~tl~~~l~QR~RWA~G~lQil~sk~~Pl~~g~~~~L~~~QRL~Yl~~~ly~l~sl~~liylllP~l~Ll~G~~iip~~s~ 901 (1091)
+|+.++++||+|||+|++||+++|+||+++|. ++|++.||++|++.++||++++++++|+++|++||++|++++|..+.
T Consensus 478 ~~l~~~l~Q~~RWa~G~lqI~~s~~nPl~~g~-~~L~~~Qrl~Y~~~~~~~~~slp~liY~~~P~l~Ll~g~~i~p~~s~ 556 (734)
T PLN02893 478 INLHDVLNQQKRWSVGLLEVAFSKYSPITFGV-KSIGLLMGLGYAHYAFWPIWSIPITIYAFLPQLALLNGVSIFPKASD 556 (734)
T ss_pred CCHHHHHHHHHHHHhhhHHHHhhccCchhhcc-cCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcccccccH
Confidence 99999999999999999999999999999764 78999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCcccccccchhhHHHhhhhHHHHHHHHHHHHHHhcCCccceeeCCCCCCCCc---c
Q 001373 902 YASILFMALFISIAATGILEMQWGGVGIHDWWRNEQFWVIGGASSHLFALIQGLLKVVGGVNTNFTVTSKAADDGE---F 978 (1091)
Q Consensus 902 ~~~i~fi~lfls~~~~~lLe~~wsG~si~~wWrne~~W~I~~~sa~lfAv~~aLlk~L~g~~~~F~VTpKg~~~~~---~ 978 (1091)
+++++++++++++++++++|++|+|.++++|||+||+|+|.++++++++++++++|.|++++.+|+||+|+.+++. +
T Consensus 557 ~~f~~yi~l~~s~~~~~~lE~~~sG~t~~~WWn~qr~w~I~~~ss~l~a~l~~iLk~lg~s~~~F~VT~K~~~~~~~~~y 636 (734)
T PLN02893 557 PWFFLYIFLFLGAYGQDLLDFLLSGGTIQRWWNDQRMWMIRGLSSFLFGLVEFLLKTLGISTFGFNVTSKVVDEEQSKRY 636 (734)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCccHhhhcchheeeehHHHHHHHHHHHHHHHHHhcccCCceeecCCCccccccccc
Confidence 8888888899999999999999999999999999999999999999999999999999999999999999865322 2
Q ss_pred -ccceeccc-ccchHHHHHHHHHHHHHHHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHHHHhhcCCC--CcchhH
Q 001373 979 -SDLYLFKW-TSLLIPPLTLLVFNLIGVIIGVADAISNGYETWGPLFGKLFFSLWVILHLYPFLKGFLGKQD--RLPTIL 1054 (1091)
Q Consensus 979 -~~ly~f~w-s~L~iP~~~Llilnlvaiv~gi~r~i~~g~~~wg~l~g~lf~~~Wvvv~l~Pfl~gL~gR~~--r~P~~v 1054 (1091)
.++|+|+| +++++|+++++++|++|+++|+++++.+ +.|+.+++++++++|++++++||++||++|++ |+|++|
T Consensus 637 ~~~~f~f~~~spl~ip~ttl~llNl~a~v~Gi~~~~~~--~~~~~~~~~~~~~~~~v~~~~P~~~gl~~r~dkg~~P~~v 714 (734)
T PLN02893 637 EQGIFEFGVSSPMFLPLTTAAIINLVSFLWGIAQIFRQ--RNLEGLFLQMFLAGFAVVNCWPIYEAMVLRTDDGKLPVKI 714 (734)
T ss_pred ccceeeecccchhHHHHHHHHHHHHHHHHHHHHHHHhC--CchhHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCccH
Confidence 47899995 8899999999999999999999999875 35888899999999999999999999999986 999999
Q ss_pred HHHHHHHHHHHHhh
Q 001373 1055 LVWAILLASIFSLL 1068 (1091)
Q Consensus 1055 ~~~s~~la~~f~~l 1068 (1091)
++||++||.++.++
T Consensus 715 ~~~s~~l~~~~~~~ 728 (734)
T PLN02893 715 TLISIVLAWALYLA 728 (734)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887764
No 11
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=100.00 E-value=7.6e-66 Score=629.07 Aligned_cols=491 Identities=25% Similarity=0.388 Sum_probs=386.4
Q ss_pred HHH-HHHHHHHHHHhhhhhccccccch----hhHHHHHHHHHHHHHHHHHHhhcCcccccccchhhhHhhhhhccCCCCC
Q 001373 289 RLI-ILLRLVILGLFFHYRILHPVNDA----YGLWLTSVICEIWFAVSWILDQFPKWDPIVRETYLDRLSLRYEKEGKPS 363 (1091)
Q Consensus 289 R~~-i~~~l~~l~~~l~wRi~~~~~~a----~~lwl~~~~~Ei~f~~~wiL~q~~kw~Pv~R~~~~~rL~~r~~~~~~~~ 363 (1091)
|++ +++.+++.++|++||++.+++.. ..+.++++++|+++.++.++..+..+.|.+|... ..+..++
T Consensus 57 ~~~~~~~~~~~~~~y~~wr~~~tl~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~r~~~--------~~~~~~~ 128 (713)
T TIGR03030 57 RLLLLVLSVFISLRYLWWRLTETLPFDNTLNFIFGTLLLLAELYSITILLLGYFQTVRPLDRTPV--------PLPLDPE 128 (713)
T ss_pred HHHHHHHHHHHHHHHHHhheeeecCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcc--------CCCCCcc
Confidence 664 55556668999999999876643 2357789999999999988888888888877542 1233457
Q ss_pred CCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCchhhhHHHHhhhHHHhhhhhhhhhhcCCCCCCc
Q 001373 364 DLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRAP 443 (1091)
Q Consensus 364 ~lP~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFCkk~~iepRaP 443 (1091)
.+|.|||+||||| |++.++.+|+.+++++|||.+|+.|||+|||+++-|.....+
T Consensus 129 ~~P~VsViIP~yN---E~~~iv~~tl~s~~~~dYP~~~~eIiVvDDgStD~t~~~~~~---------------------- 183 (713)
T TIGR03030 129 EWPTVDVFIPTYN---EDLEIVATTVLAAKNMDYPADKFRVWILDDGGTDQKRNDPDP---------------------- 183 (713)
T ss_pred cCCeeEEEEcCCC---CCHHHHHHHHHHHHhCCCCccceEEEEEECcCCccccccchh----------------------
Confidence 8999999999998 999999999999999999999999999999988743221111
Q ss_pred hhhhhhccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCCCCCCCCCchhhhhhhcCCC
Q 001373 444 EWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNG 523 (1091)
Q Consensus 444 e~YFs~~~d~~~~~~~~~f~~err~mkreYee~k~rI~~l~~~~~~~p~~~w~m~dg~~w~g~~~rdHp~iiqv~l~~~g 523 (1091)
...|. ++..++ +++++++
T Consensus 184 ------------------~~~~~---~~~~~~----~~~l~~~------------------------------------- 201 (713)
T TIGR03030 184 ------------------EQAEA---AQRREE----LKEFCRK------------------------------------- 201 (713)
T ss_pred ------------------hhhhh---hhhHHH----HHHHHHH-------------------------------------
Confidence 01110 000112 2223210
Q ss_pred CccccCCccCcEEEEeccCCCCCCCCCcchhhHHHHHhhccccCCCEEEEecCCCCCCcHHHHHHHHHhh-cCCCCCcce
Q 001373 524 VRDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFM-MDPTSGKKI 602 (1091)
Q Consensus 524 ~~d~~~~~lP~lvYvsRekRpg~~hh~KAGalNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff-~Dp~~g~~v 602 (1091)
.++.|+.|++ ++|+||||||++++. ++||||+++||||+ +.|++|++++++| .|| ++
T Consensus 202 ---------~~v~yi~r~~----n~~~KAgnLN~al~~----a~gd~Il~lDAD~v-~~pd~L~~~v~~f~~dp----~v 259 (713)
T TIGR03030 202 ---------LGVNYITRPR----NVHAKAGNINNALKH----TDGELILIFDADHV-PTRDFLQRTVGWFVEDP----KL 259 (713)
T ss_pred ---------cCcEEEECCC----CCCCChHHHHHHHHh----cCCCEEEEECCCCC-cChhHHHHHHHHHHhCC----CE
Confidence 1478999988 788999999999996 79999999999998 7899999999988 588 89
Q ss_pred EEEecceeecCCCcc-------ccccchhhhhhhhhccccccCCCccccccccchhhhhhcCCCCCCCCCCCCCcCCCCC
Q 001373 603 CYVQFPQRFDGIDRH-------DRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKPPRKTCNCLP 675 (1091)
Q Consensus 603 a~VQ~PQ~F~nid~~-------Dry~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~ 675 (1091)
++||+||.|+|.|+. +++.+++..||..+++|+|.+++++++||++++||+||
T Consensus 260 ~~Vqtp~~f~~p~~~~~nl~~~~~~~~e~~~f~~~i~~g~~~~~~~~~~Gs~~~iRR~al-------------------- 319 (713)
T TIGR03030 260 FLVQTPHFFVSPDPIERNLGTFRRMPNENELFYGLIQDGNDFWNAAFFCGSAAVLRREAL-------------------- 319 (713)
T ss_pred EEEeCCeeccCCCHHhhhhHHHHHhhhHHHHHHHHHHHHHhhhCCeeecCceeEEEHHHH--------------------
Confidence 999999999998754 34567788999999999999999999999999999888
Q ss_pred CccccccccccccccccCCccCCcchhhhhhhhhhhhcccccccccccCCchhhHhhhcCCcHHHHHhhhhhhCCCCCCC
Q 001373 676 KWCCCCCRSRKKSKKGKSNKKNKDTSKQIYALENIEEGIEGIDNEKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGA 755 (1091)
Q Consensus 676 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~~~~~ 755 (1091)
+++||++.
T Consensus 320 ----------------------------------------------------------------------~~iGGf~~-- 327 (713)
T TIGR03030 320 ----------------------------------------------------------------------DEIGGIAG-- 327 (713)
T ss_pred ----------------------------------------------------------------------HHcCCCCC--
Confidence 35677643
Q ss_pred ChhhHHHhhhhhccccccccCccccccCcccccccchHHHHHHHHHCCcEEEEecCCCCcccccCCCCHHHHHHHHHHHh
Q 001373 756 STASLLNEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWA 835 (1091)
Q Consensus 756 ~~~~~l~ea~~v~sc~YE~~T~WG~evGW~ygsvTEDi~TglrLh~~GWrsvY~~p~~~AF~G~aP~tl~~~l~QR~RWA 835 (1091)
++++||++++++|+++||+++|++.... +|++|+|++++++||.||+
T Consensus 328 -------------------------------~~vtED~~l~~rL~~~G~~~~y~~~~~~--~g~~p~sl~~~~~Qr~RWa 374 (713)
T TIGR03030 328 -------------------------------ETVTEDAETALKLHRRGWNSAYLDRPLI--AGLAPETLSGHIGQRIRWA 374 (713)
T ss_pred -------------------------------CCcCcHHHHHHHHHHcCCeEEEeccccc--cccCCCCHHHHHHHHHHHh
Confidence 5899999999999999999999965443 7999999999999999999
Q ss_pred hcchHHHhhhccccccccCCCCCccccchhhhhhhHHhHHHHHHHHHHHHHHHHHhCCcccccchhHHHHHHHHHHHHHH
Q 001373 836 LGSVEILLSRHCPIWYGYGCGLKPLERFSYINSVVYPITSIPLIAYCTLPAICLLTGKFIVPEISNYASILFMALFISIA 915 (1091)
Q Consensus 836 ~G~lQil~sk~~Pl~~g~~~~L~~~QRL~Yl~~~ly~l~sl~~liylllP~l~Ll~G~~iip~~s~~~~i~fi~lfls~~ 915 (1091)
+|++|+++. ++|++ .+++++.||++|+++++||+.+++.++|+++|++++++|..+++... ..+++++++++
T Consensus 375 ~G~~qi~~~-~~pl~---~~gl~~~qrl~y~~~~~~~~~~~~~~~~~~~P~~~l~~~~~~~~~~~----~~~~~~~lp~~ 446 (713)
T TIGR03030 375 QGMMQIFRL-DNPLL---KRGLSFPQRLCYLNAMLFWFFPLPRVIFLTAPLAYLFFGLNIFVASA----LEILAYALPHM 446 (713)
T ss_pred cChHHHHhh-hCccc---cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceeCCH----HHHHHHHHHHH
Confidence 999999975 48987 68999999999999999999999999999999999999999888642 12334446666
Q ss_pred HHHHHHhhc-cCcccccccchhhHHHhhhhHHHHHHHHHHHHHHhcCCccceeeCCCCCCCCccccceecccccchHHHH
Q 001373 916 ATGILEMQW-GGVGIHDWWRNEQFWVIGGASSHLFALIQGLLKVVGGVNTNFTVTSKAADDGEFSDLYLFKWTSLLIPPL 994 (1091)
Q Consensus 916 ~~~lLe~~w-sG~si~~wWrne~~W~I~~~sa~lfAv~~aLlk~L~g~~~~F~VTpKg~~~~~~~~ly~f~ws~L~iP~~ 994 (1091)
+.+++.+.| .|.....||+ |.|.. +.+ .+.+...+.+.+++++.+|+||||++..+.. ..+.+++|++
T Consensus 447 ~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~-~~~~~~~~~~~~~~~~~~F~VT~Kg~~~~~~------~~~~~~~p~~ 515 (713)
T TIGR03030 447 LHSLLTNSYLFGRVRWPFWS-EVYET---VLA-VYLLPPVLVTLLNPKKPKFNVTPKGELLDED------YFSPLSRPYL 515 (713)
T ss_pred HHHHHHHHHHcCCeecchHH-HHHHH---HHH-HHHHHHHHHHHhCcCCCCceecCCCcccccc------ccchHHHHHH
Confidence 666666443 4544556774 55443 222 2344455666788999999999999753221 1235899999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHHHHhh
Q 001373 995 TLLVFNLIGVIIGVADAISNGYETWGPLFGKLFFSLWVILHLYPFLKGFL 1044 (1091)
Q Consensus 995 ~Llilnlvaiv~gi~r~i~~g~~~wg~l~g~lf~~~Wvvv~l~Pfl~gL~ 1044 (1091)
+++++|++|+++|+++.+..+. ...+.+++++|.++|++-+..++.
T Consensus 516 ~l~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~w~~~n~~~~~~~~~ 561 (713)
T TIGR03030 516 ILFALILAGLAFGLYRIYGYPI----ERGVLLVVLGWNLLNLILLGAALA 561 (713)
T ss_pred HHHHHHHHHHHHHHHHHhcCcc----ccchhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999864332 234568999999999998877773
No 12
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=100.00 E-value=7.5e-66 Score=630.15 Aligned_cols=472 Identities=25% Similarity=0.410 Sum_probs=375.5
Q ss_pred HHHHHHHHHHHhhhhhccccccc----hhhHHHHHHHHHHHHHHHHHHhhcCcccccccchhhhHhhhhhccCCCCCCCC
Q 001373 291 IILLRLVILGLFFHYRILHPVND----AYGLWLTSVICEIWFAVSWILDQFPKWDPIVRETYLDRLSLRYEKEGKPSDLA 366 (1091)
Q Consensus 291 ~i~~~l~~l~~~l~wRi~~~~~~----a~~lwl~~~~~Ei~f~~~wiL~q~~kw~Pv~R~~~~~rL~~r~~~~~~~~~lP 366 (1091)
++++.+++.++|++||++.+++. +..+.++++++|+++.++.++..+..+.|..|.+. +.|...+.+|
T Consensus 189 l~~l~~~~~~rY~~WR~~~tL~~~~~~~~~~~~~ll~ae~~~~~~~~lg~~~~~~~~~r~~~--------~~~~~~~~~P 260 (852)
T PRK11498 189 LIVLSLTVSCRYIWWRYTSTLNWDDPVSLVCGLILLFAETYAWIVLVLGYFQVVWPLNRQPV--------PLPKDMSLWP 260 (852)
T ss_pred HHHHHHHHHHHHHHHHHheeeCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCC--------CCCcccCCCC
Confidence 46677788899999999987763 34556789999999999989888888778877532 1223346789
Q ss_pred ceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCchhhhHHHHhhhHHHhhhhhhhhhhcCCCCCCchhh
Q 001373 367 DIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRAPEWY 446 (1091)
Q Consensus 367 ~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFCkk~~iepRaPe~Y 446 (1091)
.|||+||||| ||..++.+|+.+++++|||.+|+.|||+|||.++-| .
T Consensus 261 ~VsViIPtYN---E~~~vv~~tI~a~l~~dYP~~k~EViVVDDgS~D~t-------~----------------------- 307 (852)
T PRK11498 261 TVDIFVPTYN---EDLNVVKNTIYASLGIDWPKDKLNIWILDDGGREEF-------R----------------------- 307 (852)
T ss_pred cEEEEEecCC---CcHHHHHHHHHHHHhccCCCCceEEEEEeCCCChHH-------H-----------------------
Confidence 9999999998 999999999999999999999999999999987611 0
Q ss_pred hhhccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCCCCCCCCCchhhhhhhcCCCCcc
Q 001373 447 FAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVRD 526 (1091)
Q Consensus 447 Fs~~~d~~~~~~~~~f~~err~mkreYee~k~rI~~l~~~~~~~p~~~w~m~dg~~w~g~~~rdHp~iiqv~l~~~g~~d 526 (1091)
+ +++ +
T Consensus 308 ----------------------------~-------la~-------~--------------------------------- 312 (852)
T PRK11498 308 ----------------------------Q-------FAQ-------E--------------------------------- 312 (852)
T ss_pred ----------------------------H-------HHH-------H---------------------------------
Confidence 0 110 0
Q ss_pred ccCCccCcEEEEeccCCCCCCCCCcchhhHHHHHhhccccCCCEEEEecCCCCCCcHHHHHHHHHh-hcCCCCCcceEEE
Q 001373 527 IEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCF-MMDPTSGKKICYV 605 (1091)
Q Consensus 527 ~~~~~lP~lvYvsRekRpg~~hh~KAGalNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcf-f~Dp~~g~~va~V 605 (1091)
.++.|+.|++ +.|+||||+|++++. ++||||+++||||+ +.+++|+++|++ +.|| ++|+|
T Consensus 313 ------~~v~yI~R~~----n~~gKAGnLN~aL~~----a~GEyIavlDAD~i-p~pdfL~~~V~~f~~dP----~VglV 373 (852)
T PRK11498 313 ------VGVKYIARPT----HEHAKAGNINNALKY----AKGEFVAIFDCDHV-PTRSFLQMTMGWFLKDK----KLAMM 373 (852)
T ss_pred ------CCcEEEEeCC----CCcchHHHHHHHHHh----CCCCEEEEECCCCC-CChHHHHHHHHHHHhCC----CeEEE
Confidence 0367999886 678999999999996 79999999999997 899999999986 4788 89999
Q ss_pred ecceeecCCCccc-------cccchhhhhhhhhccccccCCCccccccccchhhhhhcCCCCCCCCCCCCCcCCCCCCcc
Q 001373 606 QFPQRFDGIDRHD-------RYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKPPRKTCNCLPKWC 678 (1091)
Q Consensus 606 Q~PQ~F~nid~~D-------ry~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~ 678 (1091)
|+||.|+|.|+.. .+.++++.||+..++|+|.+++++++||++++||+||
T Consensus 374 Qtp~~f~n~dp~~rnl~~~~~~~~e~~~fy~~iq~g~~~~~a~~~~Gs~aviRReaL----------------------- 430 (852)
T PRK11498 374 QTPHHFFSPDPFERNLGRFRKTPNEGTLFYGLVQDGNDMWDATFFCGSCAVIRRKPL----------------------- 430 (852)
T ss_pred EcceeccCCchHHHhhHHHhhcccchhHHHHHHHhHHHhhcccccccceeeeEHHHH-----------------------
Confidence 9999999987643 2457788999999999999999999999999999888
Q ss_pred ccccccccccccccCCccCCcchhhhhhhhhhhhcccccccccccCCchhhHhhhcCCcHHHHHhhhhhhCCCCCCCChh
Q 001373 679 CCCCRSRKKSKKGKSNKKNKDTSKQIYALENIEEGIEGIDNEKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGASTA 758 (1091)
Q Consensus 679 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~~~~~~~~ 758 (1091)
+++||+++
T Consensus 431 -------------------------------------------------------------------eeVGGfd~----- 438 (852)
T PRK11498 431 -------------------------------------------------------------------DEIGGIAV----- 438 (852)
T ss_pred -------------------------------------------------------------------HHhcCCCC-----
Confidence 36787754
Q ss_pred hHHHhhhhhccccccccCccccccCcccccccchHHHHHHHHHCCcEEEEecCCCCcccccCCCCHHHHHHHHHHHhhcc
Q 001373 759 SLLNEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGS 838 (1091)
Q Consensus 759 ~~l~ea~~v~sc~YE~~T~WG~evGW~ygsvTEDi~TglrLh~~GWrsvY~~p~~~AF~G~aP~tl~~~l~QR~RWA~G~ 838 (1091)
+++|||++++++|+++||+++|++.+.. .|++|+|++++++||.||++|+
T Consensus 439 ----------------------------~titED~dlslRL~~~Gyrv~yl~~~~a--~glaPesl~~~~~QR~RWarG~ 488 (852)
T PRK11498 439 ----------------------------ETVTEDAHTSLRLHRRGYTSAYMRIPQA--AGLATESLSAHIGQRIRWARGM 488 (852)
T ss_pred ----------------------------CccCccHHHHHHHHHcCCEEEEEeccce--eEECCCCHHHHHHHHHHHHHHH
Confidence 5899999999999999999999965444 7999999999999999999999
Q ss_pred hHHHhhhccccccccCCCCCccccchhhhhhhHHhHHHHHHHHHHHHHHHHHhCCcccccchhHHHHHHHHHHHHHHHHH
Q 001373 839 VEILLSRHCPIWYGYGCGLKPLERFSYINSVVYPITSIPLIAYCTLPAICLLTGKFIVPEISNYASILFMALFISIAATG 918 (1091)
Q Consensus 839 lQil~sk~~Pl~~g~~~~L~~~QRL~Yl~~~ly~l~sl~~liylllP~l~Ll~G~~iip~~s~~~~i~fi~lfls~~~~~ 918 (1091)
+|+++ +++|++ .++|++.||++|+++++|++.+++.++|+++|++|+++|..++.+.. ..++++++++++..
T Consensus 489 lQi~r-~~~pl~---~~gL~~~qRl~y~~~~l~~l~g~~~l~~l~~Pl~~l~~gi~~i~a~~----~~i~~y~lP~~~~~ 560 (852)
T PRK11498 489 VQIFR-LDNPLT---GKGLKLAQRLCYANAMLHFLSGIPRLIFLTAPLAFLLLHAYIIYAPA----LMIALFVLPHMIHA 560 (852)
T ss_pred HHHHH-HhChhc---cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChheeCCh----HHHHHHHHHHHHHH
Confidence 99997 568987 68999999999999999999999999999999999999988775432 12233445655555
Q ss_pred HHHhhc-cCcccccccchhhHHHhhhhHHHHHHHHHHHHHHhcCCccceeeCCCCCCCCccccceecccccchHHHHHHH
Q 001373 919 ILEMQW-GGVGIHDWWRNEQFWVIGGASSHLFALIQGLLKVVGGVNTNFTVTSKAADDGEFSDLYLFKWTSLLIPPLTLL 997 (1091)
Q Consensus 919 lLe~~w-sG~si~~wWrne~~W~I~~~sa~lfAv~~aLlk~L~g~~~~F~VTpKg~~~~~~~~ly~f~ws~L~iP~~~Ll 997 (1091)
.+...| +|.....||+ |.| ..+.++.++. ..+...+++++.+|+||+|++..++. .|+|. ++.|+++++
T Consensus 561 ~l~~~~~~g~~r~~~ws-eiy---e~v~a~~l~~-~~~~~ll~p~~~~F~VTpKg~~~~~~----~~~~~-~~~P~~~L~ 630 (852)
T PRK11498 561 SLTNSRIQGKYRHSFWS-EIY---ETVLAWYIAP-PTTVALFNPHKGKFNVTAKGGLVEEE----YVDWV-ISRPYIFLV 630 (852)
T ss_pred HHHHHHhcCcchHhHHH-HHH---HHHHHHHHHH-HHHHHHcCccCCCcccCCCCcccccc----ceehH-HHHHHHHHH
Confidence 554433 3333334442 333 3344443333 23344678899999999999753321 25664 678999999
Q ss_pred HHHHHHHHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHHHHh
Q 001373 998 VFNLIGVIIGVADAISNGYETWGPLFGKLFFSLWVILHLYPFLKGF 1043 (1091)
Q Consensus 998 ilnlvaiv~gi~r~i~~g~~~wg~l~g~lf~~~Wvvv~l~Pfl~gL 1043 (1091)
++|++|+++|+++.+.+.. ....+.+++++|+++|++-+..++
T Consensus 631 ~L~l~gl~~g~~r~~~~~~---~~~~~~~~~~~W~~~nl~~l~~a~ 673 (852)
T PRK11498 631 LLNLVGVAVGIWRYFYGPP---NEILTVIVSLVWVFYNLIILGGAV 673 (852)
T ss_pred HHHHHHHHHHHHHHHhCCc---ccchhhhhhHHHHHHHHHHHHHHH
Confidence 9999999999999865321 223456799999999998777666
No 13
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=100.00 E-value=4e-45 Score=322.28 Aligned_cols=80 Identities=78% Similarity=1.481 Sum_probs=42.1
Q ss_pred cccccccCCccccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhcccccCCCCCCCCCCCCCcc
Q 001373 28 VTSVKELSGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRVDGDEEEDDTD 107 (1091)
Q Consensus 28 ~~~~~~~~~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Ykr~kgsprv~gd~ee~~~d 107 (1091)
+||++++++|+||||||+||+++|||+|||||||+|||||||||||||||+|+|||||||||||||||||+|||||||+|
T Consensus 1 pkp~k~~~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr~kgsp~V~gDeeedd~d 80 (80)
T PF14569_consen 1 PKPLKNLNGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKRHKGSPRVEGDEEEDDVD 80 (80)
T ss_dssp SS--S--SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B----TT----TTS-----S-
T ss_pred CcChhhcCCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcccccCCCCCCCCccccCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999998876
No 14
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=100.00 E-value=1.8e-35 Score=358.65 Aligned_cols=354 Identities=19% Similarity=0.233 Sum_probs=242.1
Q ss_pred hhHHHHHHHHHHHHHhhhhhccccccch---------hhHHHHHHHHHHHHHHHHHHhhcCcccccccchhhhHhhhhhc
Q 001373 287 PYRLIILLRLVILGLFFHYRILHPVNDA---------YGLWLTSVICEIWFAVSWILDQFPKWDPIVRETYLDRLSLRYE 357 (1091)
Q Consensus 287 ~yR~~i~~~l~~l~~~l~wRi~~~~~~a---------~~lwl~~~~~Ei~f~~~wiL~q~~kw~Pv~R~~~~~rL~~r~~ 357 (1091)
..|+++++..+++..+..|+....+... ..+-.+++..+.+.+.+-++..+.... .|... .+...-.
T Consensus 40 ~rr~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~lf~~~~~w~~~~~~~a~~g~~~~~~--~~~~~--~~~~~~~ 115 (691)
T PRK05454 40 LRRLILLGLTLAQTAVATWEMKAVLPYGGWTLLEPALLVLFALLFAWISLGFWTALMGFLQLLR--GRDKY--SISASAA 115 (691)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCCcc--cCCcccc
Confidence 4677777778888999999987644321 112223334444444444444332211 11111 0100000
Q ss_pred cCCCCCCCCceeEEEecCCCCCCCHHHH----HHHHHHHHcCCCCCCCcEEEEcCCCchhhhHHHHhhhHHHhhhhhhhh
Q 001373 358 KEGKPSDLADIDIFVSTVDPMKEPPLIT----ANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFC 433 (1091)
Q Consensus 358 ~~~~~~~lP~VDvfV~T~dP~kEPp~v~----~nTvls~la~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFC 433 (1091)
.+......|.|+|+||+|| |++..+ ..|+.|+.+.||| +++.+||+|||.++-+..
T Consensus 116 ~~~~~~~~~~VaVliP~yN---Ed~~~v~~~L~a~~~Sl~~~~~~-~~~e~~vLdD~~d~~~~~---------------- 175 (691)
T PRK05454 116 GDPPPPPEARTAILMPIYN---EDPARVFAGLRAMYESLAATGHG-AHFDFFILSDTRDPDIAA---------------- 175 (691)
T ss_pred cCCCCCCCCceEEEEeCCC---CChHHHHHHHHHHHHHHHhcCCC-CCEEEEEEECCCChhHHH----------------
Confidence 1123456799999999999 998754 5556677789998 589999999998873211
Q ss_pred hhcCCCCCCchhhhhhccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCCCCCCCCCch
Q 001373 434 KKFKIEPRAPEWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPG 513 (1091)
Q Consensus 434 kk~~iepRaPe~YFs~~~d~~~~~~~~~f~~err~mkreYee~k~rI~~l~~~~~~~p~~~w~m~dg~~w~g~~~rdHp~ 513 (1091)
.|+ +.|+++..+.
T Consensus 176 ------------------------------~e~----~~~~~L~~~~--------------------------------- 188 (691)
T PRK05454 176 ------------------------------AEE----AAWLELRAEL--------------------------------- 188 (691)
T ss_pred ------------------------------HHH----HHHHHHHHhc---------------------------------
Confidence 011 1222322110
Q ss_pred hhhhhhcCCCCccccCCccCcEEEEeccCCCCCCCCCcchhhHHHHHhhccccCCCEEEEecCCCCCCcHHHHHHHHHhh
Q 001373 514 MIQVFLGQNGVRDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFM 593 (1091)
Q Consensus 514 iiqv~l~~~g~~d~~~~~lP~lvYvsRekRpg~~hh~KAGalNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff 593 (1091)
+ .-+++.|..|++ |.|+||||+|.+++.++ .+++||+++|||++ +.+++|++++.+|
T Consensus 189 ---------~-------~~~~i~yr~R~~----n~~~KaGNl~~~~~~~~--~~~eyivvLDADs~-m~~d~L~~lv~~m 245 (691)
T PRK05454 189 ---------G-------GEGRIFYRRRRR----NVGRKAGNIADFCRRWG--GAYDYMVVLDADSL-MSGDTLVRLVRLM 245 (691)
T ss_pred ---------C-------CCCcEEEEECCc----CCCccHHHHHHHHHhcC--CCcCEEEEEcCCCC-CCHHHHHHHHHHH
Confidence 0 012689999987 77899999999999765 57899999999998 7899999999988
Q ss_pred c-CCCCCcceEEEecceeecCCCcc-ccccc-hhhhhhhhhccccccCCC--ccccccccchhhhhhcCCCCCCCCCCCC
Q 001373 594 M-DPTSGKKICYVQFPQRFDGIDRH-DRYSN-RNVVFFDINMKGLDGIQG--PIYVGTGCVFRRQALYGYDAPVKKKPPR 668 (1091)
Q Consensus 594 ~-Dp~~g~~va~VQ~PQ~F~nid~~-Dry~n-~~~vFfdi~~~glDg~qg--p~yvGTgcvfRR~ALyG~~p~~~~~~~~ 668 (1091)
. || ++|.||+|+.+.|.+.- .|..+ ...++.++...|++.+|+ ..|+|+|+++||+||..
T Consensus 246 ~~dP----~vGlVQt~~~~~n~~slfaR~qqf~~~~y~~~~~~G~~~w~~~~g~f~G~naIiR~~af~~----------- 310 (691)
T PRK05454 246 EANP----RAGLIQTLPVAVGADTLFARLQQFATRVYGPLFAAGLAWWQGGEGNYWGHNAIIRVKAFAE----------- 310 (691)
T ss_pred hhCc----CEEEEeCCccCcCCCCHHHHHHHHHHHHHHHHHHhhhhhhccCccccccceEEEEHHHHHH-----------
Confidence 5 99 89999999999887631 22111 234566667788887763 57999999999999951
Q ss_pred CcCCCCCCccccccccccccccccCCccCCcchhhhhhhhhhhhcccccccccccCCchhhHhhhcCCcHHHHHhhhhhh
Q 001373 669 KTCNCLPKWCCCCCRSRKKSKKGKSNKKNKDTSKQIYALENIEEGIEGIDNEKSSLMPQIKFEKKFGQSPVFIASTLKEA 748 (1091)
Q Consensus 669 ~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~ 748 (1091)
|||-.. +.+.
T Consensus 311 ------------~~glp~----------------------------------------------------------L~g~ 320 (691)
T PRK05454 311 ------------HCGLPP----------------------------------------------------------LPGR 320 (691)
T ss_pred ------------hcCCcc----------------------------------------------------------cccc
Confidence 112100 0112
Q ss_pred CCCCCCCChhhHHHhhhhhccccccccCccccccCcccccccchHHHHHHHHHCCcEEEEecCCCCcccccCCCCHHHHH
Q 001373 749 GGVPTGASTASLLNEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRL 828 (1091)
Q Consensus 749 GG~~~~~~~~~~l~ea~~v~sc~YE~~T~WG~evGW~ygsvTEDi~TglrLh~~GWrsvY~~p~~~AF~G~aP~tl~~~l 828 (1091)
| ||..++++||+++|.+|+++||+++|++ +....++++|+|+.+++
T Consensus 321 ~---------------------------------p~~~~~LseD~~~a~~l~~~GyrV~~~p-d~~~~~ee~P~tl~~~~ 366 (691)
T PRK05454 321 G---------------------------------PFGGHILSHDFVEAALMRRAGWGVWLAP-DLPGSYEELPPNLLDEL 366 (691)
T ss_pred C---------------------------------CCCCCcccHHHHHHHHHHHCCCEEEEcC-ccccccccCCCCHHHHH
Confidence 3 3555799999999999999999999994 43323899999999999
Q ss_pred HHHHHHhhcchHHHhhhccccccccCCCCCccccchhhhhhhHHhHHHHHHH
Q 001373 829 HQVLRWALGSVEILLSRHCPIWYGYGCGLKPLERFSYINSVVYPITSIPLIA 880 (1091)
Q Consensus 829 ~QR~RWA~G~lQil~sk~~Pl~~g~~~~L~~~QRL~Yl~~~ly~l~sl~~li 880 (1091)
+||.||++|++|++.. +. .+++++.+|+.|++.++.++.+...++
T Consensus 367 ~qr~RW~~G~lQ~l~~----l~---~~gl~~~~R~~~l~g~~~yl~~P~wll 411 (691)
T PRK05454 367 KRDRRWCQGNLQHLRL----LL---AKGLHPVSRLHFLTGIMSYLSAPLWLL 411 (691)
T ss_pred HHHHHHHhchHHHHHH----HH---hcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999852 33 578999999999887776666544333
No 15
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=100.00 E-value=1.9e-33 Score=306.06 Aligned_cols=182 Identities=22% Similarity=0.338 Sum_probs=146.3
Q ss_pred CcEEEEeccCCCCCCCCCcchhhHHHHHhhccccCCCEEEEecCCCCCCcHHHHHHHHHhhc-CCCCCcceEEEecceee
Q 001373 533 PRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMM-DPTSGKKICYVQFPQRF 611 (1091)
Q Consensus 533 P~lvYvsRekRpg~~hh~KAGalNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~-Dp~~g~~va~VQ~PQ~F 611 (1091)
++++|+.|++ +.|+||||||++++..+ ++++||+++|||+. +.|++|++++.+|. || ++|.||+||+|
T Consensus 67 ~~v~~~~r~~----~~g~Kag~l~~~~~~~~--~~~~~i~~~DaD~~-~~p~~l~~~v~~~~~~~----~vg~vq~~~~~ 135 (254)
T cd04191 67 GRIYYRRRRE----NTGRKAGNIADFCRRWG--SRYDYMVVLDADSL-MSGDTIVRLVRRMEANP----RAGIIQTAPKL 135 (254)
T ss_pred CcEEEEEcCC----CCCccHHHHHHHHHHhC--CCCCEEEEEeCCCC-CCHHHHHHHHHHHHhCC----CEEEEeCCcee
Confidence 4799999999 56799999999998532 58899999999997 79999999999885 98 89999999999
Q ss_pred cCCCcc-ccc-cchhhhhhhhhccccccCCC--ccccccccchhhhhhcCCCCCCCCCCCCCcCCCCCCccccccccccc
Q 001373 612 DGIDRH-DRY-SNRNVVFFDINMKGLDGIQG--PIYVGTGCVFRRQALYGYDAPVKKKPPRKTCNCLPKWCCCCCRSRKK 687 (1091)
Q Consensus 612 ~nid~~-Dry-~n~~~vFfdi~~~glDg~qg--p~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~c~~~~~~ 687 (1091)
.|.+.. .+. +-.+..|..+.+.|++.+++ .+++||+.++||+||... |
T Consensus 136 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~al~~~----------------------~------ 187 (254)
T cd04191 136 IGAETLFARLQQFANRLYGPVFGRGLAAWQGGEGNYWGHNAIIRVAAFMEH----------------------C------ 187 (254)
T ss_pred ECCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCccCccceEEEEEHHHHHHh----------------------c------
Confidence 987642 111 11355677778888887765 589999999999998411 0
Q ss_pred cccccCCccCCcchhhhhhhhhhhhcccccccccccCCchhhHhhhcCCcHHHHHhhhhhhCCCCCCCChhhHHHhhhhh
Q 001373 688 SKKGKSNKKNKDTSKQIYALENIEEGIEGIDNEKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGASTASLLNEAIHV 767 (1091)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~~~~~~~~~~l~ea~~v 767 (1091)
.+.++||+.
T Consensus 188 --------------------------------------------------------~~~~i~g~g--------------- 196 (254)
T cd04191 188 --------------------------------------------------------ALPVLPGRP--------------- 196 (254)
T ss_pred --------------------------------------------------------CCccccCCC---------------
Confidence 001234432
Q ss_pred ccccccccCccccccCcccccccchHHHHHHHHHCCcEEEEecCCCCcccccCCCCHHHHHHHHHHHhhcchH
Q 001373 768 ISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVE 840 (1091)
Q Consensus 768 ~sc~YE~~T~WG~evGW~ygsvTEDi~TglrLh~~GWrsvY~~p~~~AF~G~aP~tl~~~l~QR~RWA~G~lQ 840 (1091)
||..++++||+++|++++.+||+++|.+....+ ++++|+|++++++||.||++|++|
T Consensus 197 ---------------~~~~~~l~eD~~l~~~~~~~G~ri~~~~~~~~~-~~~~p~~~~~~~~qr~RW~~G~~q 253 (254)
T cd04191 197 ---------------PFGGHILSHDFVEAALMRRAGWEVRLAPDLEGS-YEECPPTLIDFLKRDRRWCQGNLQ 253 (254)
T ss_pred ---------------CCCCCeecHHHHHHHHHHHcCCEEEEccCCcce-EeECCCCHHHHHHHHHHHHhhcCc
Confidence 466789999999999999999999999543333 689999999999999999999998
No 16
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=4.4e-30 Score=294.38 Aligned_cols=233 Identities=30% Similarity=0.469 Sum_probs=173.4
Q ss_pred CCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCchhhhHHHHhhhHHHhhhhhhhhhhcCCCCCCch
Q 001373 365 LADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRAPE 444 (1091)
Q Consensus 365 lP~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFCkk~~iepRaPe 444 (1091)
+|.|||+||++| |++.++.+|+.|++++|||. +.++|.|||+++-|++-+ ++++.
T Consensus 53 ~p~vsviiP~yn---E~~~~~~~~l~s~~~~dyp~--~evivv~d~~~d~~~~~~--------------~~~~~------ 107 (439)
T COG1215 53 LPKVSVIIPAYN---EEPEVLEETLESLLSQDYPR--YEVIVVDDGSTDETYEIL--------------EELGA------ 107 (439)
T ss_pred CCceEEEEecCC---CchhhHHHHHHHHHhCCCCC--ceEEEECCCCChhHHHHH--------------HHHHh------
Confidence 699999999998 99999999999999999995 889999999988544422 12110
Q ss_pred hhhhhccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCCCCCCCCCchhhhhhhcCCCC
Q 001373 445 WYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGV 524 (1091)
Q Consensus 445 ~YFs~~~d~~~~~~~~~f~~err~mkreYee~k~rI~~l~~~~~~~p~~~w~m~dg~~w~g~~~rdHp~iiqv~l~~~g~ 524 (1091)
+| + | .+
T Consensus 108 ---------------------------~~-----------------~------------~---------~~--------- 113 (439)
T COG1215 108 ---------------------------EY-----------------G------------P---------NF--------- 113 (439)
T ss_pred ---------------------------hc-----------------C------------c---------ce---------
Confidence 00 0 0 00
Q ss_pred ccccCCccCcEEEEeccCCCCCCCCCcchhhHHHHHhhccccCCCEEEEecCCCCCCcHHHHHHHHHhhcCCCCCcceEE
Q 001373 525 RDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICY 604 (1091)
Q Consensus 525 ~d~~~~~lP~lvYvsRekRpg~~hh~KAGalNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~va~ 604 (1091)
.++|. ++ .+++|+||+|.++.. +.+|+|+++|||++ +.|++|++++..|.|+. .+|.
T Consensus 114 ---------~~~~~--~~----~~~gK~~al~~~l~~----~~~d~V~~~DaD~~-~~~d~l~~~~~~f~~~~---~~~v 170 (439)
T COG1215 114 ---------RVIYP--EK----KNGGKAGALNNGLKR----AKGDVVVILDADTV-PEPDALRELVSPFEDPP---VGAV 170 (439)
T ss_pred ---------EEEec--cc----cCccchHHHHHHHhh----cCCCEEEEEcCCCC-CChhHHHHHHhhhcCCC---eeEE
Confidence 12211 22 678999999999985 56999999999997 89999999999999884 3479
Q ss_pred EecceeecCCCccccccchhh-----hhhhhhccccccCCCccccccccchhhhhhcCCCCCCCCCCCCCcCCCCCCccc
Q 001373 605 VQFPQRFDGIDRHDRYSNRNV-----VFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKPPRKTCNCLPKWCC 679 (1091)
Q Consensus 605 VQ~PQ~F~nid~~Dry~n~~~-----vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~ 679 (1091)
+|.||.+.+.++....+..+. .++-....+.++-...++.|++.+|||+||
T Consensus 171 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~G~~~~~rr~aL------------------------ 226 (439)
T COG1215 171 VGTPRIRNRPDPSNLLGRIQAIEYLSAFYFRLRAASKGGLISFLSGSSSAFRRSAL------------------------ 226 (439)
T ss_pred eCCceeeecCChhhhcchhcchhhhhhHHHhhhhhhhcCCeEEEcceeeeEEHHHH------------------------
Confidence 999999988764111111111 122112222222245566666666666655
Q ss_pred cccccccccccccCCccCCcchhhhhhhhhhhhcccccccccccCCchhhHhhhcCCcHHHHHhhhhhhCCCCCCCChhh
Q 001373 680 CCCRSRKKSKKGKSNKKNKDTSKQIYALENIEEGIEGIDNEKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGASTAS 759 (1091)
Q Consensus 680 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~~~~~~~~~ 759 (1091)
++.||
T Consensus 227 ------------------------------------------------------------------~~~g~--------- 231 (439)
T COG1215 227 ------------------------------------------------------------------EEVGG--------- 231 (439)
T ss_pred ------------------------------------------------------------------HHhCC---------
Confidence 45664
Q ss_pred HHHhhhhhccccccccCccccccCcccccccchHHHHHHHHHCCcEEEEecCCCCcccccCCCCHHHHHHHHHHHhhcch
Q 001373 760 LLNEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSV 839 (1091)
Q Consensus 760 ~l~ea~~v~sc~YE~~T~WG~evGW~ygsvTEDi~TglrLh~~GWrsvY~~p~~~AF~G~aP~tl~~~l~QR~RWA~G~l 839 (1091)
|...++|||.+++++++.+|||+.|++.+.. ++++|+|+.++++||.||++|++
T Consensus 232 ------------------------~~~~~i~ED~~lt~~l~~~G~~~~~~~~~~~--~~~~p~t~~~~~~Qr~RW~~g~~ 285 (439)
T COG1215 232 ------------------------WLEDTITEDADLTLRLHLRGYRVVYVPEAIV--WTEAPETLKELWRQRLRWARGGL 285 (439)
T ss_pred ------------------------CCCCceeccHHHHHHHHHCCCeEEEeecceE--eeeCcccHHHHHHHHHHHHcccc
Confidence 4557999999999999999999999965433 89999999999999999999999
Q ss_pred HHHhh
Q 001373 840 EILLS 844 (1091)
Q Consensus 840 Qil~s 844 (1091)
|++..
T Consensus 286 ~~~~~ 290 (439)
T COG1215 286 QVLLL 290 (439)
T ss_pred eeeeh
Confidence 99975
No 17
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=99.97 E-value=2.1e-28 Score=285.29 Aligned_cols=232 Identities=22% Similarity=0.273 Sum_probs=168.2
Q ss_pred CCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCchhhhHHHHhhhHHHhhhhhhhhhhcCCCCCC
Q 001373 363 SDLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRA 442 (1091)
Q Consensus 363 ~~lP~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFCkk~~iepRa 442 (1091)
...|.|+|+||+|| |+. .+.+|+.|+++.||| ++.++|.|||.++-|.+.+.+
T Consensus 72 ~~~p~vsViIP~yN---E~~-~i~~~l~sll~q~yp--~~eIivVdDgs~D~t~~~~~~--------------------- 124 (444)
T PRK14583 72 KGHPLVSILVPCFN---EGL-NARETIHAALAQTYT--NIEVIAINDGSSDDTAQVLDA--------------------- 124 (444)
T ss_pred CCCCcEEEEEEeCC---CHH-HHHHHHHHHHcCCCC--CeEEEEEECCCCccHHHHHHH---------------------
Confidence 35799999999998 875 568999999999999 589999999998744332211
Q ss_pred chhhhhhccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCCCCCCCCCchhhhhhhcCC
Q 001373 443 PEWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQN 522 (1091)
Q Consensus 443 Pe~YFs~~~d~~~~~~~~~f~~err~mkreYee~k~rI~~l~~~~~~~p~~~w~m~dg~~w~g~~~rdHp~iiqv~l~~~ 522 (1091)
+.+
T Consensus 125 ----------------------------------------~~~------------------------------------- 127 (444)
T PRK14583 125 ----------------------------------------LLA------------------------------------- 127 (444)
T ss_pred ----------------------------------------HHH-------------------------------------
Confidence 110
Q ss_pred CCccccCCccCcEEEEeccCCCCCCCCCcchhhHHHHHhhccccCCCEEEEecCCCCCCcHHHHHHHHHhh-cCCCCCcc
Q 001373 523 GVRDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFM-MDPTSGKK 601 (1091)
Q Consensus 523 g~~d~~~~~lP~lvYvsRekRpg~~hh~KAGalNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff-~Dp~~g~~ 601 (1091)
+.|++.++.+++ ...||+|+|++++. +++|||+++|+|++ ++|++|++.+-.| .|| +
T Consensus 128 --------~~~~v~vv~~~~-----n~Gka~AlN~gl~~----a~~d~iv~lDAD~~-~~~d~L~~lv~~~~~~~----~ 185 (444)
T PRK14583 128 --------EDPRLRVIHLAH-----NQGKAIALRMGAAA----ARSEYLVCIDGDAL-LDKNAVPYLVAPLIANP----R 185 (444)
T ss_pred --------hCCCEEEEEeCC-----CCCHHHHHHHHHHh----CCCCEEEEECCCCC-cCHHHHHHHHHHHHhCC----C
Confidence 012345555443 23599999999985 68999999999997 7999999999755 567 8
Q ss_pred eEEEecceeecCCCcc-ccc-cchhhhhhhhhccccccCCCccc-cccccchhhhhhcCCCCCCCCCCCCCcCCCCCCcc
Q 001373 602 ICYVQFPQRFDGIDRH-DRY-SNRNVVFFDINMKGLDGIQGPIY-VGTGCVFRRQALYGYDAPVKKKPPRKTCNCLPKWC 678 (1091)
Q Consensus 602 va~VQ~PQ~F~nid~~-Dry-~n~~~vFfdi~~~glDg~qgp~y-vGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~ 678 (1091)
++.||..++..|.+.. .+. ..+...++....++.+-.+..+. .|++++|||+||
T Consensus 186 ~g~v~g~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~g~~~~~sG~~~~~rr~al----------------------- 242 (444)
T PRK14583 186 TGAVTGNPRIRTRSTLIGRVQVGEFSSIIGLIKRTQRVYGQVFTVSGVVAAFRRRAL----------------------- 242 (444)
T ss_pred eEEEEccceecCCCcchhhHHHHHHHHHHHHHHHHHHHhCCceEecCceeEEEHHHH-----------------------
Confidence 9999998776543211 111 11222333444444333333322 355556666555
Q ss_pred ccccccccccccccCCccCCcchhhhhhhhhhhhcccccccccccCCchhhHhhhcCCcHHHHHhhhhhhCCCCCCCChh
Q 001373 679 CCCCRSRKKSKKGKSNKKNKDTSKQIYALENIEEGIEGIDNEKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGASTA 758 (1091)
Q Consensus 679 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~~~~~~~~ 758 (1091)
+++||
T Consensus 243 -------------------------------------------------------------------~~vGg-------- 247 (444)
T PRK14583 243 -------------------------------------------------------------------ADVGY-------- 247 (444)
T ss_pred -------------------------------------------------------------------HHcCC--------
Confidence 46676
Q ss_pred hHHHhhhhhccccccccCccccccCcccccccchHHHHHHHHHCCcEEEEecCCCCcccccCCCCHHHHHHHHHHHhhcc
Q 001373 759 SLLNEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGS 838 (1091)
Q Consensus 759 ~~l~ea~~v~sc~YE~~T~WG~evGW~ygsvTEDi~TglrLh~~GWrsvY~~p~~~AF~G~aP~tl~~~l~QR~RWA~G~ 838 (1091)
|..+.++||+++++|++.+||++.|++.. .+ ++++|+|++++++||.||++|.
T Consensus 248 -------------------------~~~~~i~ED~dl~~rl~~~G~~i~~~p~a-~~-~~~~p~t~~~~~~Qr~RW~~G~ 300 (444)
T PRK14583 248 -------------------------WSPDMITEDIDISWKLQLKHWSVFFEPRG-LC-WILMPETLRGLWKQRLRWAQGG 300 (444)
T ss_pred -------------------------CCCCcccccHHHHHHHHHcCCeEEEeecc-EE-eeeCCCCHHHHHHHHHHHhCcH
Confidence 44568999999999999999999999543 33 8999999999999999999999
Q ss_pred hHHHhhh
Q 001373 839 VEILLSR 845 (1091)
Q Consensus 839 lQil~sk 845 (1091)
+|+++++
T Consensus 301 ~~~~~~~ 307 (444)
T PRK14583 301 AEVFLKN 307 (444)
T ss_pred HHHHHHH
Confidence 9999754
No 18
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=99.96 E-value=3.8e-27 Score=274.57 Aligned_cols=281 Identities=17% Similarity=0.209 Sum_probs=189.5
Q ss_pred CCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCchhhhHHHHhhhHHHhhhhhhhhhhcCCCCC
Q 001373 362 PSDLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPR 441 (1091)
Q Consensus 362 ~~~lP~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFCkk~~iepR 441 (1091)
++.+|.|+|+||+|| |+ ..+.+||.|+++++||.+++.|+|.|||+++-|.+.+.++
T Consensus 45 ~~~~P~vsVIIP~yN---e~-~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~il~~~------------------- 101 (439)
T TIGR03111 45 IGKLPDITIIIPVYN---SE-DTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQVFCRA------------------- 101 (439)
T ss_pred cCCCCCEEEEEEeCC---Ch-HHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHHHHHHH-------------------
Confidence 467999999999998 76 7899999999999999999999999999987554432221
Q ss_pred CchhhhhhccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCCCCCCCCCchhhhhhhcC
Q 001373 442 APEWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQ 521 (1091)
Q Consensus 442 aPe~YFs~~~d~~~~~~~~~f~~err~mkreYee~k~rI~~l~~~~~~~p~~~w~m~dg~~w~g~~~rdHp~iiqv~l~~ 521 (1091)
.+ .+
T Consensus 102 ------------------------------------------~~------------------------~~---------- 105 (439)
T TIGR03111 102 ------------------------------------------QN------------------------EF---------- 105 (439)
T ss_pred ------------------------------------------HH------------------------hC----------
Confidence 00 00
Q ss_pred CCCccccCCccCc--EEEEeccCCCCCCCCCcchhhHHHHHhhccccCCCEEEEecCCCCCCcHHHHHHHHHhhc-CCCC
Q 001373 522 NGVRDIEGNLLPR--LVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMM-DPTS 598 (1091)
Q Consensus 522 ~g~~d~~~~~lP~--lvYvsRekRpg~~hh~KAGalNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~-Dp~~ 598 (1091)
|+ ++++ ++ .+.||+|+|++++. ++++||+++|+|++ ++|++|++++..|. ||
T Consensus 106 -----------~~v~v~~~--~~-----~~Gka~AlN~gl~~----s~g~~v~~~DaD~~-~~~d~L~~l~~~f~~~~-- 160 (439)
T TIGR03111 106 -----------PGLSLRYM--NS-----DQGKAKALNAAIYN----SIGKYIIHIDSDGK-LHKDAIKNMVTRFENNP-- 160 (439)
T ss_pred -----------CCeEEEEe--CC-----CCCHHHHHHHHHHH----ccCCEEEEECCCCC-cChHHHHHHHHHHHhCC--
Confidence 11 2222 21 25799999999985 68999999999998 79999999999775 77
Q ss_pred CcceEEEecceeecCCCcccc-------ccchhhhhhhhhc-----cccccCCCccccccccchhhhhhcCCCCCCCCCC
Q 001373 599 GKKICYVQFPQRFDGIDRHDR-------YSNRNVVFFDINM-----KGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKP 666 (1091)
Q Consensus 599 g~~va~VQ~PQ~F~nid~~Dr-------y~n~~~vFfdi~~-----~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~ 666 (1091)
+++.|+..+.-. .+..+. +..+.. +++... ++.....+..++
T Consensus 161 --~v~~v~g~~~~~-~~~~~~~~~~~~~~~~~~~-~~~y~~~~l~~r~~~s~~~~~~~---------------------- 214 (439)
T TIGR03111 161 --DIHAMTGVILTD-KELIEKTKGRFLKLIRRCE-YFEYAQAFLAGRNFESQVNSLFT---------------------- 214 (439)
T ss_pred --CeEEEEeEEecC-chhhhhhcchhhhHhHHhH-HHHHHHHHHhhhHHHHhcCCeEE----------------------
Confidence 676665544221 110000 000000 111100 000000000000
Q ss_pred CCCcCCCCCCccccccccccccccccCCccCCcchhhhhhhhhhhhcccccccccccCCchhhHhhhcCCcHHHHHhhhh
Q 001373 667 PRKTCNCLPKWCCCCCRSRKKSKKGKSNKKNKDTSKQIYALENIEEGIEGIDNEKSSLMPQIKFEKKFGQSPVFIASTLK 746 (1091)
Q Consensus 667 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~ 746 (1091)
--|....|++++++
T Consensus 215 ------------------------------------------------------------------~sGa~~~~Rr~~l~ 228 (439)
T TIGR03111 215 ------------------------------------------------------------------LSGAFSAFRRETIL 228 (439)
T ss_pred ------------------------------------------------------------------EccHHHhhhHHHHH
Confidence 01445567777778
Q ss_pred hhCCCCCCCChhhHHHhhhhhccccccccCccccccCcccccccchHHHHHHHHH-CCcEEEEecCCCCcccccCCCCHH
Q 001373 747 EAGGVPTGASTASLLNEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHC-HGWRSVYCIPKRPAFKGSAPINLS 825 (1091)
Q Consensus 747 e~GG~~~~~~~~~~l~ea~~v~sc~YE~~T~WG~evGW~ygsvTEDi~TglrLh~-~GWrsvY~~p~~~AF~G~aP~tl~ 825 (1091)
+.||+++ ++++||++++++++. .|+++.|++++ . ++.++|+|++
T Consensus 229 ~vggf~~---------------------------------~~i~ED~~l~~rl~~~~g~kv~~~~~a-~-~~~~~p~t~~ 273 (439)
T TIGR03111 229 KTQLYNS---------------------------------ETVGEDTDMTFQIRELLDGKVYLCENA-I-FYVDPIDGLN 273 (439)
T ss_pred HhCCCCC---------------------------------CCcCccHHHHHHHHHhcCCeEEECCCC-E-EEEECCcCHH
Confidence 8897654 589999999999975 59999999543 3 3889999999
Q ss_pred HHHHHHHHHhhcchHHHhhhccccccccCCCCCccccchhhhhhhHHhHHHHHHHHHHHHHHHHHhCCccc
Q 001373 826 DRLHQVLRWALGSVEILLSRHCPIWYGYGCGLKPLERFSYINSVVYPITSIPLIAYCTLPAICLLTGKFIV 896 (1091)
Q Consensus 826 ~~l~QR~RWA~G~lQil~sk~~Pl~~g~~~~L~~~QRL~Yl~~~ly~l~sl~~liylllP~l~Ll~G~~ii 896 (1091)
++++||.||++|.+|++.....+.. +.+.++.+++.+...+..+...++.+++.++++++.+++.++.
T Consensus 274 ~~~~QR~RW~rG~~qv~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (439)
T TIGR03111 274 KLYTQRQRWQRGELEVSHMFFESAN---KSIKGFFSNFMVRRIMYDHTFAFPRMIWYFAMIFLIFLGYPVK 341 (439)
T ss_pred HHHHHHHHHhccHHHHHHHHHhhhh---hchhhhhhHHHHHHHHhhHhhHHHHHHHHHHHHHHHHhccHHH
Confidence 9999999999999999965433332 3445566665554445555557787888888888887775443
No 19
>PRK11204 N-glycosyltransferase; Provisional
Probab=99.96 E-value=1.1e-26 Score=267.47 Aligned_cols=231 Identities=24% Similarity=0.295 Sum_probs=164.6
Q ss_pred CCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCchhhhHHHHhhhHHHhhhhhhhhhhcCCCCC
Q 001373 362 PSDLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPR 441 (1091)
Q Consensus 362 ~~~lP~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFCkk~~iepR 441 (1091)
....|.|.|+||++| |+ ..+.+|+.|+++.+|| ++.++|.|||.++-|.+.+.
T Consensus 50 ~~~~p~vsViIp~yn---e~-~~i~~~l~sl~~q~yp--~~eiiVvdD~s~d~t~~~l~--------------------- 102 (420)
T PRK11204 50 LKEYPGVSILVPCYN---EG-ENVEETISHLLALRYP--NYEVIAINDGSSDNTGEILD--------------------- 102 (420)
T ss_pred cCCCCCEEEEEecCC---CH-HHHHHHHHHHHhCCCC--CeEEEEEECCCCccHHHHHH---------------------
Confidence 356899999999998 75 6789999999999999 68899999998863322111
Q ss_pred CchhhhhhccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCCCCCCCCCchhhhhhhcC
Q 001373 442 APEWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQ 521 (1091)
Q Consensus 442 aPe~YFs~~~d~~~~~~~~~f~~err~mkreYee~k~rI~~l~~~~~~~p~~~w~m~dg~~w~g~~~rdHp~iiqv~l~~ 521 (1091)
++++
T Consensus 103 ----------------------------------------~~~~------------------------------------ 106 (420)
T PRK11204 103 ----------------------------------------RLAA------------------------------------ 106 (420)
T ss_pred ----------------------------------------HHHH------------------------------------
Confidence 0110
Q ss_pred CCCccccCCccCcEEEEeccCCCCCCCCCcchhhHHHHHhhccccCCCEEEEecCCCCCCcHHHHHHHHHhh-cCCCCCc
Q 001373 522 NGVRDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFM-MDPTSGK 600 (1091)
Q Consensus 522 ~g~~d~~~~~lP~lvYvsRekRpg~~hh~KAGalNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff-~Dp~~g~ 600 (1091)
+.|++.++.++++ ..||+|+|.+++. +++|||+++|+|.+ +.|++|++++..| .||
T Consensus 107 ---------~~~~v~~i~~~~n-----~Gka~aln~g~~~----a~~d~i~~lDaD~~-~~~d~L~~l~~~~~~~~---- 163 (420)
T PRK11204 107 ---------QIPRLRVIHLAEN-----QGKANALNTGAAA----ARSEYLVCIDGDAL-LDPDAAAYMVEHFLHNP---- 163 (420)
T ss_pred ---------hCCcEEEEEcCCC-----CCHHHHHHHHHHH----cCCCEEEEECCCCC-CChhHHHHHHHHHHhCC----
Confidence 0134677776653 3499999999985 68999999999997 7999999999977 587
Q ss_pred ceEEEecceeecCCCccccccchhhh----hhhhhccccccCCCcc-ccccccchhhhhhcCCCCCCCCCCCCCcCCCCC
Q 001373 601 KICYVQFPQRFDGIDRHDRYSNRNVV----FFDINMKGLDGIQGPI-YVGTGCVFRRQALYGYDAPVKKKPPRKTCNCLP 675 (1091)
Q Consensus 601 ~va~VQ~PQ~F~nid~~Dry~n~~~v----Ffdi~~~glDg~qgp~-yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~ 675 (1091)
+++.||...+..|... ..+..+.. ++....++..-.+... ..|+++
T Consensus 164 ~v~~v~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~--------------------------- 214 (420)
T PRK11204 164 RVGAVTGNPRIRNRST--LLGRIQVGEFSSIIGLIKRAQRVYGRVFTVSGVIT--------------------------- 214 (420)
T ss_pred CeEEEECCceeccchh--HHHHHHHHHHHHhhhHHHHHHHHhCCceEecceee---------------------------
Confidence 8999999877665321 11111111 1111111110010110 123333
Q ss_pred CccccccccccccccccCCccCCcchhhhhhhhhhhhcccccccccccCCchhhHhhhcCCcHHHHHhhhhhhCCCCCCC
Q 001373 676 KWCCCCCRSRKKSKKGKSNKKNKDTSKQIYALENIEEGIEGIDNEKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGA 755 (1091)
Q Consensus 676 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~~~~~ 755 (1091)
.|++++++++||+.
T Consensus 215 ---------------------------------------------------------------~~rr~~l~~vgg~~--- 228 (420)
T PRK11204 215 ---------------------------------------------------------------AFRKSALHEVGYWS--- 228 (420)
T ss_pred ---------------------------------------------------------------eeeHHHHHHhCCCC---
Confidence 44445556778754
Q ss_pred ChhhHHHhhhhhccccccccCccccccCcccccccchHHHHHHHHHCCcEEEEecCCCCcccccCCCCHHHHHHHHHHHh
Q 001373 756 STASLLNEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWA 835 (1091)
Q Consensus 756 ~~~~~l~ea~~v~sc~YE~~T~WG~evGW~ygsvTEDi~TglrLh~~GWrsvY~~p~~~AF~G~aP~tl~~~l~QR~RWA 835 (1091)
.+.++||+++++|++.+||++.|++. ..+ +++.|+|++++++||.||+
T Consensus 229 ------------------------------~~~~~ED~~l~~rl~~~G~~i~~~p~-~~~-~~~~p~t~~~~~~Qr~RW~ 276 (420)
T PRK11204 229 ------------------------------TDMITEDIDISWKLQLRGWDIRYEPR-ALC-WILMPETLKGLWKQRLRWA 276 (420)
T ss_pred ------------------------------CCcccchHHHHHHHHHcCCeEEeccc-cEE-EeECcccHHHHHHHHHHHh
Confidence 35789999999999999999999954 444 8999999999999999999
Q ss_pred hcchHHHhhh
Q 001373 836 LGSVEILLSR 845 (1091)
Q Consensus 836 ~G~lQil~sk 845 (1091)
+|.+|.+++.
T Consensus 277 ~G~~~~l~~~ 286 (420)
T PRK11204 277 QGGAEVLLKN 286 (420)
T ss_pred cCHHHHHHHH
Confidence 9999999754
No 20
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=99.94 E-value=6.7e-25 Score=259.04 Aligned_cols=265 Identities=20% Similarity=0.207 Sum_probs=179.6
Q ss_pred CCCceeEEEecCCCCCCCHHHHHHHHHHHH-cCCCCCCCcEEEEcCCCchhhhHHHHhhhHHHhhhhhhhhhhcCCCCCC
Q 001373 364 DLADIDIFVSTVDPMKEPPLITANTVLSIL-AVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRA 442 (1091)
Q Consensus 364 ~lP~VDvfV~T~dP~kEPp~v~~nTvls~l-a~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFCkk~~iepRa 442 (1091)
..|.|+|+||++| |. .++.+||-|++ ++||| ++.|+|.||+..+-|.+.+.+.
T Consensus 64 ~~p~vaIlIPA~N---E~-~vI~~~l~s~L~~ldY~--~~eIiVv~d~ndd~T~~~v~~l-------------------- 117 (504)
T PRK14716 64 PEKRIAIFVPAWR---EA-DVIGRMLEHNLATLDYE--NYRIFVGTYPNDPATLREVDRL-------------------- 117 (504)
T ss_pred CCCceEEEEeccC---ch-hHHHHHHHHHHHcCCCC--CeEEEEEECCCChhHHHHHHHH--------------------
Confidence 4899999999998 86 78999999965 79996 7999999998887554433221
Q ss_pred chhhhhhccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCCCCCCCCCchhhhhhhcCC
Q 001373 443 PEWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQN 522 (1091)
Q Consensus 443 Pe~YFs~~~d~~~~~~~~~f~~err~mkreYee~k~rI~~l~~~~~~~p~~~w~m~dg~~w~g~~~rdHp~iiqv~l~~~ 522 (1091)
++ .|
T Consensus 118 -----------------------------------------~~------------------------~~----------- 121 (504)
T PRK14716 118 -----------------------------------------AA------------------------RY----------- 121 (504)
T ss_pred -----------------------------------------HH------------------------HC-----------
Confidence 10 11
Q ss_pred CCccccCCccCcEEEEeccCCCCCCCCCcchhhHHHHHhhc--cccCC---CEEEEecCCCCCCcHHHHHHHHHhhcCCC
Q 001373 523 GVRDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSA--VISNA---PYLLNVDCDHYINNSKALREAMCFMMDPT 597 (1091)
Q Consensus 523 g~~d~~~~~lP~lvYvsRekRpg~~hh~KAGalNallrvSa--v~tng---p~Il~lDcD~~~~~p~~Lr~amcff~Dp~ 597 (1091)
|++..+. .+++| .+.||+|||.+++... ....| ++|+++|||.+ ++|++|+....++.|
T Consensus 122 ----------p~v~~vv-~~~~g--p~~Ka~aLN~~l~~~~~~e~~~G~~~d~vvi~DAD~~-v~Pd~Lr~~~~~~~~-- 185 (504)
T PRK14716 122 ----------PRVHLVI-VPHDG--PTSKADCLNWIYQAIFAFERERGIRFAIIVLHDAEDV-IHPLELRLYNYLLPR-- 185 (504)
T ss_pred ----------CCeEEEE-eCCCC--CCCHHHHHHHHHHHHHHhhhhcCCCcCEEEEEcCCCC-cCccHHHHHHhhcCC--
Confidence 1222222 12232 3589999999987521 01234 99999999998 799999976555443
Q ss_pred CCcceEEEecceeecCCCcccc----ccchhhhhhhhhccccccCCCcc-ccccccchhhhhhcCCCCCCCCCCCCCcCC
Q 001373 598 SGKKICYVQFPQRFDGIDRHDR----YSNRNVVFFDINMKGLDGIQGPI-YVGTGCVFRRQALYGYDAPVKKKPPRKTCN 672 (1091)
Q Consensus 598 ~g~~va~VQ~PQ~F~nid~~Dr----y~n~~~vFfdi~~~glDg~qgp~-yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~ 672 (1091)
.++||.|....+.+.+.. |..+....+...++.++.+++++ ..|+|++|||++|--
T Consensus 186 ----~~~VQ~pv~~~~~~~~~~~ag~y~~ef~~~~~~~l~~r~~LG~~~~~~Gtg~afRR~aLe~--------------- 246 (504)
T PRK14716 186 ----HDFVQLPVFSLPRDWGEWVAGTYMDEFAESHLKDLPVREALGGLIPSAGVGTAFSRRALER--------------- 246 (504)
T ss_pred ----CCEEecceeccCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCeeEEeEHHHHHH---------------
Confidence 458999987665433322 22222222334456677777764 679999999988820
Q ss_pred CCCCccccccccccccccccCCccCCcchhhhhhhhhhhhcccccccccccCCchhhHhhhcCCcHHHHHhhhhhhCCCC
Q 001373 673 CLPKWCCCCCRSRKKSKKGKSNKKNKDTSKQIYALENIEEGIEGIDNEKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVP 752 (1091)
Q Consensus 673 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~~ 752 (1091)
...+.||.
T Consensus 247 -----------------------------------------------------------------------l~~~~GG~- 254 (504)
T PRK14716 247 -----------------------------------------------------------------------LAAERGGQ- 254 (504)
T ss_pred -----------------------------------------------------------------------HHhhcCCC-
Confidence 01123441
Q ss_pred CCCChhhHHHhhhhhccccccccCccccccCcccccccchHHHHHHHHHCCcEEEEecCCC-------------Cccccc
Q 001373 753 TGASTASLLNEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKR-------------PAFKGS 819 (1091)
Q Consensus 753 ~~~~~~~~l~ea~~v~sc~YE~~T~WG~evGW~ygsvTEDi~TglrLh~~GWrsvY~~p~~-------------~AF~G~ 819 (1091)
+|..+++|||+++|++++.+|||++|++.++ .+.+++
T Consensus 255 ------------------------------~fd~~sLTED~dLglRL~~~G~rv~y~p~ai~~~~~~~~~~~~~v~t~e~ 304 (504)
T PRK14716 255 ------------------------------PFDSDSLTEDYDIGLRLKRAGFRQIFVRVRADDTTDRPDRRGEPIATREF 304 (504)
T ss_pred ------------------------------CCCCCCcchHHHHHHHHHHCCCEEEEeccccccccccccccccccccccc
Confidence 2677899999999999999999999995442 123578
Q ss_pred CCCCHHHHHHHHHHHhhcc-hHHHhhhc--cccccccCCCCCccccchhhhhhh
Q 001373 820 APINLSDRLHQVLRWALGS-VEILLSRH--CPIWYGYGCGLKPLERFSYINSVV 870 (1091)
Q Consensus 820 aP~tl~~~l~QR~RWA~G~-lQil~sk~--~Pl~~g~~~~L~~~QRL~Yl~~~l 870 (1091)
+|+|++++++||.||+.|. +|...+.- .++. .+-+.|++|...+..++
T Consensus 305 ~P~t~~a~~rQR~RW~~Gi~~Q~~~~~gw~~~~~---~~~~~~rdr~~~~~~~~ 355 (504)
T PRK14716 305 FPDTFKAAVRQKARWIYGIAFQGWERLGWKGPAA---TKYMLWRDRKGLLTNLL 355 (504)
T ss_pred CccCHHHHHHHHHHHHhchHHhhHHhcCCCCchh---hhhhHHHHHHHHHHHHH
Confidence 9999999999999999995 78874211 1111 23366777777665443
No 21
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=99.93 E-value=4.7e-24 Score=260.81 Aligned_cols=170 Identities=21% Similarity=0.315 Sum_probs=123.5
Q ss_pred CCcchhhHHHHHhhccc---cCC--CEEEEecCCCCCCcHHHHHHHHHhhcCCCCCcceEEEecceeecCCCcccc----
Q 001373 549 HKKAGAMNALIRVSAVI---SNA--PYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDGIDRHDR---- 619 (1091)
Q Consensus 549 h~KAGalNallrvSav~---tng--p~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~va~VQ~PQ~F~nid~~Dr---- 619 (1091)
+.||+|||.++....-. +.+ +.++++|||.+ ++|++|+ .+-+|.++ + ++||.|..-.+...+..
T Consensus 132 ~gKa~aLN~~l~~~~~~e~~~~~~~~vvvi~DAD~~-v~pd~L~-~~~~l~~~----~-~~VQ~p~~p~~~~~~~~~~~~ 204 (727)
T PRK11234 132 TSKADCLNNVLDAITQFERSANFAFAGFILHDAEDV-ISPMELR-LFNYLVER----K-DLIQIPVYPFEREWTHFTSGT 204 (727)
T ss_pred CCHHHHHHHHHHHHHhhhcccCCcccEEEEEcCCCC-CChhHHH-HHHhhcCC----C-CeEeecccCCCccHHHHHHHH
Confidence 47999999998863111 133 56888999997 7999998 67888887 4 79999966332222211
Q ss_pred ccchhhhhhhhhccccccCCCc-cccccccchhhhhhcCCCCCCCCCCCCCcCCCCCCccccccccccccccccCCccCC
Q 001373 620 YSNRNVVFFDINMKGLDGIQGP-IYVGTGCVFRRQALYGYDAPVKKKPPRKTCNCLPKWCCCCCRSRKKSKKGKSNKKNK 698 (1091)
Q Consensus 620 y~n~~~vFfdi~~~glDg~qgp-~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~ 698 (1091)
|..+....+...+++++.++|+ .+.|+|++|.|+++
T Consensus 205 ~~~EFa~~~~~~~~~~~~lgg~~~l~G~~~af~Rr~l------------------------------------------- 241 (727)
T PRK11234 205 YIDEFAELHGKDVPVREALAGQVPSAGVGTCFSRRAV------------------------------------------- 241 (727)
T ss_pred HHHHHHHHhhhhhHHHHHcCCCcccCCceEEEecccH-------------------------------------------
Confidence 2233334455667888888765 56688888844433
Q ss_pred cchhhhhhhhhhhhcccccccccccCCchhhHhhhcCCcHHHHHhhhhhhC-CCCCCCChhhHHHhhhhhccccccccCc
Q 001373 699 DTSKQIYALENIEEGIEGIDNEKSSLMPQIKFEKKFGQSPVFIASTLKEAG-GVPTGASTASLLNEAIHVISCGYEDKTD 777 (1091)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~G-G~~~~~~~~~~l~ea~~v~sc~YE~~T~ 777 (1091)
+++.+.| |+
T Consensus 242 --------------------------------------------~al~~~ggg~-------------------------- 251 (727)
T PRK11234 242 --------------------------------------------TALLEDGDGI-------------------------- 251 (727)
T ss_pred --------------------------------------------HHHHHhcCCC--------------------------
Confidence 1233455 43
Q ss_pred cccccCcccccccchHHHHHHHHHCCcEEEEecCCC---------------------CcccccCCCCHHHHHHHHHHHhh
Q 001373 778 WGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKR---------------------PAFKGSAPINLSDRLHQVLRWAL 836 (1091)
Q Consensus 778 WG~evGW~ygsvTEDi~TglrLh~~GWrsvY~~p~~---------------------~AF~G~aP~tl~~~l~QR~RWA~ 836 (1091)
+|..+++|||+++|++|+.+||+++|++..+ .++++..|+|+++.++||.||..
T Consensus 252 -----~~~~~~lTED~dlg~rL~~~G~~v~f~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~t~~~~~rQR~RW~~ 326 (727)
T PRK11234 252 -----AFDVQSLTEDYDIGFRLKEKGMREIFVRFPVVDEAKEREQRKFLQHARTSNMICVREYFPDTFSAAVRQKSRWII 326 (727)
T ss_pred -----CcCCCcchHHHHHHHHHHHCCCEEEEcccccccccccccccccccccccccceEEEEeCchhHHHHHHHHHHHHc
Confidence 5888999999999999999999999996211 33578889999999999999999
Q ss_pred c-chHHHh
Q 001373 837 G-SVEILL 843 (1091)
Q Consensus 837 G-~lQil~ 843 (1091)
| .+|.+.
T Consensus 327 G~~~q~~~ 334 (727)
T PRK11234 327 GIVFQGFK 334 (727)
T ss_pred ccHHHHHH
Confidence 9 588874
No 22
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=99.93 E-value=1.5e-24 Score=226.45 Aligned_cols=229 Identities=36% Similarity=0.600 Sum_probs=178.1
Q ss_pred CceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCchhhhHHHHhhhHHHhhhhhhhhhhcCCCCCCchh
Q 001373 366 ADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRAPEW 445 (1091)
Q Consensus 366 P~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFCkk~~iepRaPe~ 445 (1091)
|.|.|+||++| |++..+..++.|+++.+||.+++.++|+|||.+.-|.+-+
T Consensus 1 p~vsviip~~n---~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~-------------------------- 51 (234)
T cd06421 1 PTVDVFIPTYN---EPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRALA-------------------------- 51 (234)
T ss_pred CceEEEEecCC---CcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHHHH--------------------------
Confidence 67999999998 8888999999999999999988999999999876322211
Q ss_pred hhhhccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCCCCCCCCCchhhhhhhcCCCCc
Q 001373 446 YFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVR 525 (1091)
Q Consensus 446 YFs~~~d~~~~~~~~~f~~err~mkreYee~k~rI~~l~~~~~~~p~~~w~m~dg~~w~g~~~rdHp~iiqv~l~~~g~~ 525 (1091)
+++.. .
T Consensus 52 -----------------------------------~~~~~---------------------------------------~ 57 (234)
T cd06421 52 -----------------------------------AELGV---------------------------------------E 57 (234)
T ss_pred -----------------------------------HHhhc---------------------------------------c
Confidence 01100 0
Q ss_pred cccCCccCcEEEEeccCCCCCCCCCcchhhHHHHHhhccccCCCEEEEecCCCCCCcHHHHHHHHHhhcC-CCCCcceEE
Q 001373 526 DIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMD-PTSGKKICY 604 (1091)
Q Consensus 526 d~~~~~lP~lvYvsRekRpg~~hh~KAGalNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~D-p~~g~~va~ 604 (1091)
.++.|+.+++ +.+.|+||+|.+++. .+++||+.+|+|.+ .+|++|.+.+..|.+ | +++.
T Consensus 58 -------~~~~~~~~~~----~~~~~~~~~n~~~~~----a~~d~i~~lD~D~~-~~~~~l~~l~~~~~~~~----~~~~ 117 (234)
T cd06421 58 -------YGYRYLTRPD----NRHAKAGNLNNALAH----TTGDFVAILDADHV-PTPDFLRRTLGYFLDDP----KVAL 117 (234)
T ss_pred -------cCceEEEeCC----CCCCcHHHHHHHHHh----CCCCEEEEEccccC-cCccHHHHHHHHHhcCC----CeEE
Confidence 0245666665 556899999999995 58999999999998 689999999998876 6 8999
Q ss_pred EecceeecCCCccc----cccchhhhhhhhhccccccCCCccccccccchhhhhhcCCCCCCCCCCCCCcCCCCCCcccc
Q 001373 605 VQFPQRFDGIDRHD----RYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKPPRKTCNCLPKWCCC 680 (1091)
Q Consensus 605 VQ~PQ~F~nid~~D----ry~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~ 680 (1091)
||+++.+.+.+..+ .+......|+.....+........+.|++.+|||+++
T Consensus 118 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~~~------------------------- 172 (234)
T cd06421 118 VQTPQFFYNPDPFDWLADGAPNEQELFYGVIQPGRDRWGAAFCCGSGAVVRREAL------------------------- 172 (234)
T ss_pred EecceEEecCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCceecCceeeEeHHHH-------------------------
Confidence 99999998776542 2333444555555555544555666777777777665
Q ss_pred ccccccccccccCCccCCcchhhhhhhhhhhhcccccccccccCCchhhHhhhcCCcHHHHHhhhhhhCCCCCCCChhhH
Q 001373 681 CCRSRKKSKKGKSNKKNKDTSKQIYALENIEEGIEGIDNEKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGASTASL 760 (1091)
Q Consensus 681 c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~~~~~~~~~~ 760 (1091)
+++||++.
T Consensus 173 -----------------------------------------------------------------~~ig~~~~------- 180 (234)
T cd06421 173 -----------------------------------------------------------------DEIGGFPT------- 180 (234)
T ss_pred -----------------------------------------------------------------HHhCCCCc-------
Confidence 45677653
Q ss_pred HHhhhhhccccccccCccccccCcccccccchHHHHHHHHHCCcEEEEecCCCCcccccCCCCHHHHHHHHHHHhhcchH
Q 001373 761 LNEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVE 840 (1091)
Q Consensus 761 l~ea~~v~sc~YE~~T~WG~evGW~ygsvTEDi~TglrLh~~GWrsvY~~p~~~AF~G~aP~tl~~~l~QR~RWA~G~lQ 840 (1091)
..+.||++++++++.+||+++|.+..+. ++..|.++.++++||.||.+|.+|
T Consensus 181 --------------------------~~~~eD~~l~~r~~~~g~~i~~~~~~~~--~~~~~~~~~~~~~q~~rw~~~~~~ 232 (234)
T cd06421 181 --------------------------DSVTEDLATSLRLHAKGWRSVYVPEPLA--AGLAPETLAAYIKQRLRWARGMLQ 232 (234)
T ss_pred --------------------------cceeccHHHHHHHHHcCceEEEecCccc--cccCCccHHHHHHHHHHHhcCCee
Confidence 3668999999999999999999965443 899999999999999999999998
Q ss_pred HH
Q 001373 841 IL 842 (1091)
Q Consensus 841 il 842 (1091)
++
T Consensus 233 ~~ 234 (234)
T cd06421 233 IL 234 (234)
T ss_pred eC
Confidence 64
No 23
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=99.92 E-value=5.6e-24 Score=224.53 Aligned_cols=228 Identities=23% Similarity=0.324 Sum_probs=161.8
Q ss_pred CceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCchhhhHHHHhhhHHHhhhhhhhhhhcCCCCCCchh
Q 001373 366 ADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRAPEW 445 (1091)
Q Consensus 366 P~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFCkk~~iepRaPe~ 445 (1091)
|.|.|+||+|| |. ..+..++.|+++++||.+++.|+|.|| ++.-|++.+.+..
T Consensus 1 p~vSViIp~yN---e~-~~l~~~L~sl~~q~~~~~~~eIiVvD~-s~D~t~~~~~~~~---------------------- 53 (232)
T cd06437 1 PMVTVQLPVFN---EK-YVVERLIEAACALDYPKDRLEIQVLDD-STDETVRLAREIV---------------------- 53 (232)
T ss_pred CceEEEEecCC---cH-HHHHHHHHHHHhcCCCccceEEEEEEC-CCCcHHHHHHHHH----------------------
Confidence 67999999998 75 678999999999999999999999998 6654544332210
Q ss_pred hhhhccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCCCCCCCCCchhhhhhhcCCCCc
Q 001373 446 YFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVR 525 (1091)
Q Consensus 446 YFs~~~d~~~~~~~~~f~~err~mkreYee~k~rI~~l~~~~~~~p~~~w~m~dg~~w~g~~~rdHp~iiqv~l~~~g~~ 525 (1091)
.+++
T Consensus 54 ----------------------------~~~~------------------------------------------------ 57 (232)
T cd06437 54 ----------------------------EEYA------------------------------------------------ 57 (232)
T ss_pred ----------------------------HHHh------------------------------------------------
Confidence 0000
Q ss_pred cccCCccCcEEEEeccCCCCCCCCCcchhhHHHHHhhccccCCCEEEEecCCCCCCcHHHHHHHHHhhcCCCCCcceEEE
Q 001373 526 DIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYV 605 (1091)
Q Consensus 526 d~~~~~lP~lvYvsRekRpg~~hh~KAGalNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~va~V 605 (1091)
..-++++++.+.+++| +||+|+|++++. ++++||+++|+|.+ +.|++|++++.++.|| ++++|
T Consensus 58 ----~~~~~i~~~~~~~~~G----~k~~a~n~g~~~----a~~~~i~~~DaD~~-~~~~~l~~~~~~~~~~----~v~~v 120 (232)
T cd06437 58 ----AQGVNIKHVRRADRTG----YKAGALAEGMKV----AKGEYVAIFDADFV-PPPDFLQKTPPYFADP----KLGFV 120 (232)
T ss_pred ----hcCCceEEEECCCCCC----CchHHHHHHHHh----CCCCEEEEEcCCCC-CChHHHHHhhhhhcCC----CeEEE
Confidence 0012578888877544 699999999985 58999999999998 6899999977888888 89999
Q ss_pred ecceeecCCCccc--ccc-chhhhhhhhhccccccCCCc-cccccccchhhhhhcCCCCCCCCCCCCCcCCCCCCccccc
Q 001373 606 QFPQRFDGIDRHD--RYS-NRNVVFFDINMKGLDGIQGP-IYVGTGCVFRRQALYGYDAPVKKKPPRKTCNCLPKWCCCC 681 (1091)
Q Consensus 606 Q~PQ~F~nid~~D--ry~-n~~~vFfdi~~~glDg~qgp-~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~c 681 (1091)
|.+..+.+.+.+- ++. -....+|.....+....... ...|+++
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--------------------------------- 167 (232)
T cd06437 121 QTRWGHINANYSLLTRVQAMSLDYHFTIEQVARSSTGLFFNFNGTAG--------------------------------- 167 (232)
T ss_pred ecceeeEcCCCchhhHhhhhhHHhhhhHhHhhHhhcCCeEEeccchh---------------------------------
Confidence 9987766543321 100 00111222222222111111 1233344
Q ss_pred cccccccccccCCccCCcchhhhhhhhhhhhcccccccccccCCchhhHhhhcCCcHHHHHhhhhhhCCCCCCCChhhHH
Q 001373 682 CRSRKKSKKGKSNKKNKDTSKQIYALENIEEGIEGIDNEKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGASTASLL 761 (1091)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~~~~~~~~~~l 761 (1091)
.|++++++++||++.
T Consensus 168 ---------------------------------------------------------~~rr~~~~~vgg~~~-------- 182 (232)
T cd06437 168 ---------------------------------------------------------VWRKECIEDAGGWNH-------- 182 (232)
T ss_pred ---------------------------------------------------------hhhHHHHHHhCCCCC--------
Confidence 445555567888754
Q ss_pred HhhhhhccccccccCccccccCcccccccchHHHHHHHHHCCcEEEEecCCCCcccccCCCCHHHHHHHHHHHhhcc
Q 001373 762 NEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGS 838 (1091)
Q Consensus 762 ~ea~~v~sc~YE~~T~WG~evGW~ygsvTEDi~TglrLh~~GWrsvY~~p~~~AF~G~aP~tl~~~l~QR~RWA~G~ 838 (1091)
.++.||+++++|++.+||+++|++ ...+ +...|+|+.++++||+||++|.
T Consensus 183 -------------------------~~~~ED~~l~~rl~~~G~~~~~~~-~~~v-~~~~~~~~~~~~~q~~rW~~g~ 232 (232)
T cd06437 183 -------------------------DTLTEDLDLSYRAQLKGWKFVYLD-DVVV-PAELPASMSAYRSQQHRWSKGP 232 (232)
T ss_pred -------------------------CcchhhHHHHHHHHHCCCeEEEec-ccee-eeeCCcCHHHHHHHHHHhccCC
Confidence 367899999999999999999994 4443 8999999999999999999984
No 24
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=99.90 E-value=7.2e-23 Score=218.23 Aligned_cols=232 Identities=24% Similarity=0.316 Sum_probs=164.2
Q ss_pred CceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCchhhhHHHHhhhHHHhhhhhhhhhhcCCCCCCchh
Q 001373 366 ADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRAPEW 445 (1091)
Q Consensus 366 P~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFCkk~~iepRaPe~ 445 (1091)
|.|.|+||++| |+ ..+..|+.|+++.+||.+++.+.|.|||.++-|.+-+.+
T Consensus 1 p~vsIiIp~~N---e~-~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~~~------------------------ 52 (241)
T cd06427 1 PVYTILVPLYK---EA-EVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAARA------------------------ 52 (241)
T ss_pred CeEEEEEecCC---cH-HHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHHHH------------------------
Confidence 68999999998 86 778999999999999988999999999987744332111
Q ss_pred hhhhccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCCCCCCCCCchhhhhhhcCCCCc
Q 001373 446 YFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVR 525 (1091)
Q Consensus 446 YFs~~~d~~~~~~~~~f~~err~mkreYee~k~rI~~l~~~~~~~p~~~w~m~dg~~w~g~~~rdHp~iiqv~l~~~g~~ 525 (1091)
+.. +
T Consensus 53 -------------------------------------~~~-----~---------------------------------- 56 (241)
T cd06427 53 -------------------------------------LRL-----P---------------------------------- 56 (241)
T ss_pred -------------------------------------hcc-----C----------------------------------
Confidence 000 0
Q ss_pred cccCCccCcEEEEeccCCCCCCCCCcchhhHHHHHhhccccCCCEEEEecCCCCCCcHHHHHHHHHhhcCCCCCcceEEE
Q 001373 526 DIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYV 605 (1091)
Q Consensus 526 d~~~~~lP~lvYvsRekRpg~~hh~KAGalNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~va~V 605 (1091)
.-.+++++.+.+ ...|++|+|++++. ++|+||+.+|+|.. ..|++|.+++.+|.+. ..++++|
T Consensus 57 -----~~~~i~~~~~~~-----~~G~~~a~n~g~~~----a~gd~i~~~DaD~~-~~~~~l~~~~~~~~~~--~~~v~~~ 119 (241)
T cd06427 57 -----SIFRVVVVPPSQ-----PRTKPKACNYALAF----ARGEYVVIYDAEDA-PDPDQLKKAVAAFARL--DDKLACV 119 (241)
T ss_pred -----CCeeEEEecCCC-----CCchHHHHHHHHHh----cCCCEEEEEcCCCC-CChHHHHHHHHHHHhc--CCCEEEE
Confidence 001344444322 23699999999995 68999999999998 6899999999988621 1289999
Q ss_pred ecceeecCCCccc--c-ccchhhhhhhhhccccccCCCcc-ccccccchhhhhhcCCCCCCCCCCCCCcCCCCCCccccc
Q 001373 606 QFPQRFDGIDRHD--R-YSNRNVVFFDINMKGLDGIQGPI-YVGTGCVFRRQALYGYDAPVKKKPPRKTCNCLPKWCCCC 681 (1091)
Q Consensus 606 Q~PQ~F~nid~~D--r-y~n~~~vFfdi~~~glDg~qgp~-yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~c 681 (1091)
|.+..+.+...+- + +......+|...+++....+.+. +.|++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---------------------------------- 165 (241)
T cd06427 120 QAPLNYYNARENWLTRMFALEYAAWFDYLLPGLARLGLPIPLGGTS---------------------------------- 165 (241)
T ss_pred eCceEeeCCCccHHHHHHHHHHHHHHHHHHHHHHhcCCeeecCCch----------------------------------
Confidence 9998887643221 0 01111122333333333222222 12333
Q ss_pred cccccccccccCCccCCcchhhhhhhhhhhhcccccccccccCCchhhHhhhcCCcHHHHHhhhhhhCCCCCCCChhhHH
Q 001373 682 CRSRKKSKKGKSNKKNKDTSKQIYALENIEEGIEGIDNEKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGASTASLL 761 (1091)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~~~~~~~~~~l 761 (1091)
..|++++++++||+.+
T Consensus 166 --------------------------------------------------------~~~rr~~~~~vgg~~~-------- 181 (241)
T cd06427 166 --------------------------------------------------------NHFRTDVLRELGGWDP-------- 181 (241)
T ss_pred --------------------------------------------------------HHhhHHHHHHcCCCCc--------
Confidence 3445555567887643
Q ss_pred HhhhhhccccccccCccccccCcccccccchHHHHHHHHHCCcEEEEecCCCCcccccCCCCHHHHHHHHHHHhhcchHH
Q 001373 762 NEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEI 841 (1091)
Q Consensus 762 ~ea~~v~sc~YE~~T~WG~evGW~ygsvTEDi~TglrLh~~GWrsvY~~p~~~AF~G~aP~tl~~~l~QR~RWA~G~lQi 841 (1091)
...+||+++++|++.+||+++|+ +... +...|+|++++++||.||+.|.+|+
T Consensus 182 -------------------------~~~~eD~~l~~rl~~~G~r~~~~-~~~~--~~~~~~~~~~~~~q~~Rw~~g~~~~ 233 (241)
T cd06427 182 -------------------------FNVTEDADLGLRLARAGYRTGVL-NSTT--LEEANNALGNWIRQRSRWIKGYMQT 233 (241)
T ss_pred -------------------------ccchhhHHHHHHHHHCCceEEEe-cccc--cccCcHhHHHHHHHHHHHhccHHHH
Confidence 36789999999999999999999 4333 6899999999999999999999999
Q ss_pred Hhh
Q 001373 842 LLS 844 (1091)
Q Consensus 842 l~s 844 (1091)
+..
T Consensus 234 ~~~ 236 (241)
T cd06427 234 WLV 236 (241)
T ss_pred HHH
Confidence 964
No 25
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=99.90 E-value=1.2e-22 Score=213.87 Aligned_cols=174 Identities=29% Similarity=0.446 Sum_probs=122.4
Q ss_pred cEEEEeccCCCCCCCCCcchhhHHHHHhhccccCCCEEEEecCCCCCCcHHHHHHHHHhhcCCCCCcceEEEecceeecC
Q 001373 534 RLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDG 613 (1091)
Q Consensus 534 ~lvYvsRekRpg~~hh~KAGalNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~va~VQ~PQ~F~n 613 (1091)
++.++..++. .+.||||+|.+++.+. .+++||+.+|+|-. ..|++|.+.+.+|.+| +++.||+++.+.+
T Consensus 57 ~i~~i~~~~~----~G~~~~a~n~g~~~a~--~~~d~i~~lD~D~~-~~~~~l~~l~~~~~~~----~~~~v~~~~~~~~ 125 (236)
T cd06435 57 RFRFFHVEPL----PGAKAGALNYALERTA--PDAEIIAVIDADYQ-VEPDWLKRLVPIFDDP----RVGFVQAPQDYRD 125 (236)
T ss_pred cEEEEEcCCC----CCCchHHHHHHHHhcC--CCCCEEEEEcCCCC-cCHHHHHHHHHHhcCC----CeeEEecCccccC
Confidence 3566666653 4469999999998642 46899999999986 7899999999998877 8999999876543
Q ss_pred CCcccccc----chhhhhhhhhccccccCCCccccccccchhhhhhcCCCCCCCCCCCCCcCCCCCCccccccccccccc
Q 001373 614 IDRHDRYS----NRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKPPRKTCNCLPKWCCCCCRSRKKSK 689 (1091)
Q Consensus 614 id~~Dry~----n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~c~~~~~~~~ 689 (1091)
... ..+. -....+|...++.....+.....|+++++||+
T Consensus 126 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~------------------------------------ 168 (236)
T cd06435 126 GEE-SLFKRMCYAEYKGFFDIGMVSRNERNAIIQHGTMCLIRRS------------------------------------ 168 (236)
T ss_pred CCc-cHHHHHHhHHHHHHHHHHhccccccCceEEecceEEEEHH------------------------------------
Confidence 211 1110 00011122222222222223334444455554
Q ss_pred cccCCccCCcchhhhhhhhhhhhcccccccccccCCchhhHhhhcCCcHHHHHhhhhhhCCCCCCCChhhHHHhhhhhcc
Q 001373 690 KGKSNKKNKDTSKQIYALENIEEGIEGIDNEKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGASTASLLNEAIHVIS 769 (1091)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~~~~~~~~~~l~ea~~v~s 769 (1091)
++.++||+++
T Consensus 169 ------------------------------------------------------~~~~iGgf~~---------------- 178 (236)
T cd06435 169 ------------------------------------------------------ALDDVGGWDE---------------- 178 (236)
T ss_pred ------------------------------------------------------HHHHhCCCCC----------------
Confidence 4456787754
Q ss_pred ccccccCccccccCcccccccchHHHHHHHHHCCcEEEEecCCCCcccccCCCCHHHHHHHHHHHhhcchHHHhh
Q 001373 770 CGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEILLS 844 (1091)
Q Consensus 770 c~YE~~T~WG~evGW~ygsvTEDi~TglrLh~~GWrsvY~~p~~~AF~G~aP~tl~~~l~QR~RWA~G~lQil~s 844 (1091)
....||+++++|++.+||++.|++.. .+ +...|.|+.++++||.||++|++|++.+
T Consensus 179 -----------------~~~~eD~dl~~r~~~~G~~~~~~~~~-~~-~~~~~~~~~~~~~q~~rw~~g~~~~~~~ 234 (236)
T cd06435 179 -----------------WCITEDSELGLRMHEAGYIGVYVAQS-YG-HGLIPDTFEAFKKQRFRWAYGAVQILKK 234 (236)
T ss_pred -----------------ccccchHHHHHHHHHCCcEEEEcchh-hc-cCcCcccHHHHHHHHHHHhcchhhhhhc
Confidence 35689999999999999999999543 33 7899999999999999999999999963
No 26
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=99.87 E-value=1e-22 Score=213.02 Aligned_cols=224 Identities=28% Similarity=0.431 Sum_probs=136.3
Q ss_pred CceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCchhhhHHHHhhhHHHhhhhhhhhhhcCCCCCCchh
Q 001373 366 ADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRAPEW 445 (1091)
Q Consensus 366 P~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFCkk~~iepRaPe~ 445 (1091)
|.|.|+||++| |+. .+..|+.|+++.+|| ++.++|+||+...-|.+.+
T Consensus 1 P~v~Vvip~~~---~~~-~l~~~l~sl~~~~~~--~~~v~vvd~~~~~~~~~~~-------------------------- 48 (228)
T PF13641_consen 1 PRVSVVIPAYN---EDD-VLRRCLESLLAQDYP--RLEVVVVDDGSDDETAEIL-------------------------- 48 (228)
T ss_dssp --EEEE--BSS----HH-HHHHHHHHHTTSHHH--TEEEEEEEE-SSS-GCTTH--------------------------
T ss_pred CEEEEEEEecC---CHH-HHHHHHHHHHcCCCC--CeEEEEEECCCChHHHHHH--------------------------
Confidence 78999999998 764 999999999999995 5999999999875222111
Q ss_pred hhhhccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCCCCCCCCCchhhhhhhcCCCCc
Q 001373 446 YFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVR 525 (1091)
Q Consensus 446 YFs~~~d~~~~~~~~~f~~err~mkreYee~k~rI~~l~~~~~~~p~~~w~m~dg~~w~g~~~rdHp~iiqv~l~~~g~~ 525 (1091)
++++++ +|+
T Consensus 49 -----------------------------------~~~~~~------------------------~~~------------ 57 (228)
T PF13641_consen 49 -----------------------------------RALAAR------------------------YPR------------ 57 (228)
T ss_dssp -----------------------------------HHHHHT------------------------TGG------------
T ss_pred -----------------------------------HHHHHH------------------------cCC------------
Confidence 111110 000
Q ss_pred cccCCccCcEEEEeccCCCCCCCCCcchhhHHHHHhhccccCCCEEEEecCCCCCCcHHHHHHHHHhhcCCCCCcceEEE
Q 001373 526 DIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYV 605 (1091)
Q Consensus 526 d~~~~~lP~lvYvsRekRpg~~hh~KAGalNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~va~V 605 (1091)
-++.|+.+.+.+| ...|++|+|.+++. ..+++|+++|+|.+ +.|++|++++.+|.+| +++.|
T Consensus 58 -------~~v~vi~~~~~~g--~~~k~~a~n~~~~~----~~~d~i~~lD~D~~-~~p~~l~~~~~~~~~~----~~~~v 119 (228)
T PF13641_consen 58 -------VRVRVIRRPRNPG--PGGKARALNEALAA----ARGDYILFLDDDTV-LDPDWLERLLAAFADP----GVGAV 119 (228)
T ss_dssp --------GEEEEE----HH--HHHHHHHHHHHHHH-------SEEEEE-SSEE-E-CHHHHHHHHHHHBS----S--EE
T ss_pred -------CceEEeecCCCCC--cchHHHHHHHHHHh----cCCCEEEEECCCcE-ECHHHHHHHHHHHHhC----CCCeE
Confidence 0367777765321 23699999999996 56999999999998 6999999999988888 89999
Q ss_pred ecceeecCCCccccccchhhhhhhh----hccccccCCCccccccccchhhhhhcCCCCCCCCCCCCCcCCCCCCccccc
Q 001373 606 QFPQRFDGIDRHDRYSNRNVVFFDI----NMKGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKPPRKTCNCLPKWCCCC 681 (1091)
Q Consensus 606 Q~PQ~F~nid~~Dry~n~~~vFfdi----~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~c 681 (1091)
|.+..+++ +.+ .+..-...++.. ...+....+.+.+.|++++|||++|
T Consensus 120 ~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~~-------------------------- 171 (228)
T PF13641_consen 120 GGPVFPDN-DRN-WLTRLQDLFFARWHLRFRSGRRALGVAFLSGSGMLFRRSAL-------------------------- 171 (228)
T ss_dssp EEEEEETT-CCC-EEEE-TT--S-EETTTS-TT-B----S-B--TEEEEEHHHH--------------------------
T ss_pred eeeEeecC-CCC-HHHHHHHHHHhhhhhhhhhhhcccceeeccCcEEEEEHHHH--------------------------
Confidence 98886664 322 122222222211 2233344445566788888888666
Q ss_pred cccccccccccCCccCCcchhhhhhhhhhhhcccccccccccCCchhhHhhhcCCcHHHHHhhhhhhCCCCCCCChhhHH
Q 001373 682 CRSRKKSKKGKSNKKNKDTSKQIYALENIEEGIEGIDNEKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGASTASLL 761 (1091)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~~~~~~~~~~l 761 (1091)
+++||+++
T Consensus 172 ----------------------------------------------------------------~~~g~fd~-------- 179 (228)
T PF13641_consen 172 ----------------------------------------------------------------EEVGGFDP-------- 179 (228)
T ss_dssp ----------------------------------------------------------------HHH-S--S--------
T ss_pred ----------------------------------------------------------------HHhCCCCC--------
Confidence 45676543
Q ss_pred HhhhhhccccccccCccccccCcccccccchHHHHHHHHHCCcEEEEecCCCCcccccCCCCHHHHHHHHHHHhhc
Q 001373 762 NEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALG 837 (1091)
Q Consensus 762 ~ea~~v~sc~YE~~T~WG~evGW~ygsvTEDi~TglrLh~~GWrsvY~~p~~~AF~G~aP~tl~~~l~QR~RWA~G 837 (1091)
....||+++++++..+||++.|++. ..+ +...|.+++++++||.||+.|
T Consensus 180 -------------------------~~~~eD~~l~~r~~~~G~~~~~~~~-~~v-~~~~~~~~~~~~~q~~RW~~g 228 (228)
T PF13641_consen 180 -------------------------FILGEDFDLCLRLRAAGWRIVYAPD-ALV-YHEEPSSLKAFFKQRFRWSRG 228 (228)
T ss_dssp -------------------------SSSSHHHHHHHHHHHTT--EEEEEE-EEE-EE--SSSTHHHHHHHHHHH--
T ss_pred -------------------------CCcccHHHHHHHHHHCCCcEEEECC-cEE-EEeCCCCHHHHHHHHhccCcC
Confidence 4778999999999999999999954 333 899999999999999999987
No 27
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=99.83 E-value=1.3e-18 Score=211.50 Aligned_cols=171 Identities=19% Similarity=0.265 Sum_probs=125.3
Q ss_pred CCCcchhhHHHHHhh---ccccCCCE--EEEecCCCCCCcHHHHHHHHHhhcCCCCCcceEEEeccee-ecCCCcc---c
Q 001373 548 HHKKAGAMNALIRVS---AVISNAPY--LLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQR-FDGIDRH---D 618 (1091)
Q Consensus 548 hh~KAGalNallrvS---av~tngp~--Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~va~VQ~PQ~-F~nid~~---D 618 (1091)
...||.|||.++... .-.+.+.| |+++|||-+ ++|++|+. |-++.+. + -+||.|-. ..|...+ .
T Consensus 139 p~gKa~ALN~~l~~~~~~e~~~~~~fa~vvi~DAEd~-~~P~~L~~-~~~~~~~----~-~~iQ~pV~~~~~~~~~~l~~ 211 (703)
T PRK15489 139 PTCKADCLNWIIQAIFRYEAGHGIEFAGVILHDSEDV-LHPLELKY-FNYLLPR----K-DLVQLPVLSLERKWYEWVAG 211 (703)
T ss_pred CCCHHHHHHHHHHHHHhhhhhccCccceEEEEcCCCC-CChhHHHH-HHhhcCC----c-ceeeeeeccCCCccccHHHH
Confidence 347999999988752 11234555 999999997 89999975 5666643 1 36998821 1111111 2
Q ss_pred cccchhhhhhhhhccccccCCCccc-cccccchhhhhhcCCCCCCCCCCCCCcCCCCCCccccccccccccccccCCccC
Q 001373 619 RYSNRNVVFFDINMKGLDGIQGPIY-VGTGCVFRRQALYGYDAPVKKKPPRKTCNCLPKWCCCCCRSRKKSKKGKSNKKN 697 (1091)
Q Consensus 619 ry~n~~~vFfdi~~~glDg~qgp~y-vGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~ 697 (1091)
-|..+....|+..++++..+.|++. .|||++|||.||-
T Consensus 212 ~~~~Efa~~~~~~l~~r~~l~~~ipl~Gv~~~frr~aL~----------------------------------------- 250 (703)
T PRK15489 212 TYMDEFAEWHQKDLVVRESLTGTVPSAGVGTCFSRRALL----------------------------------------- 250 (703)
T ss_pred HHHHHHHHHhhhHHHHHHHcCCceeccCcceeeeHHHHH-----------------------------------------
Confidence 3666777788888999998988866 5689999998882
Q ss_pred CcchhhhhhhhhhhhcccccccccccCCchhhHhhhcCCcHHHHHhhhhhhCCCCCCCChhhHHHhhhhhccccccccCc
Q 001373 698 KDTSKQIYALENIEEGIEGIDNEKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGASTASLLNEAIHVISCGYEDKTD 777 (1091)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~~~~~~~~~~l~ea~~v~sc~YE~~T~ 777 (1091)
.+.+.||..
T Consensus 251 ----------------------------------------------~l~~~gg~~------------------------- 259 (703)
T PRK15489 251 ----------------------------------------------ALMKERGNQ------------------------- 259 (703)
T ss_pred ----------------------------------------------HHHHhcCCC-------------------------
Confidence 012334321
Q ss_pred cccccCcccccccchHHHHHHHHHCCcEEEEecC---------------------CCCcccccCCCCHHHHHHHHHHHhh
Q 001373 778 WGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIP---------------------KRPAFKGSAPINLSDRLHQVLRWAL 836 (1091)
Q Consensus 778 WG~evGW~ygsvTEDi~TglrLh~~GWrsvY~~p---------------------~~~AF~G~aP~tl~~~l~QR~RWA~ 836 (1091)
+|+.+++|||+++|+||+.+|||+.|+.- ...+.++..|.|+.+.++||.||..
T Consensus 260 -----~~n~~sLTED~Dlg~RL~~~G~r~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~tre~fP~~~~a~~rQk~RW~~ 334 (703)
T PRK15489 260 -----PFNTSSLTEDYDFSFRLAELGMQEIFVRFPVQFRVRRTSWFGPRRERTREMLLCVREYFPDTFRTAYRQKARWVL 334 (703)
T ss_pred -----CCCCCCchHhHHHHHHHHHCCCceEEEEEeccccccccccccccccccccCceeehhhCcHHHHHHHHHHHHHHh
Confidence 48889999999999999999999999321 1245578899999999999999999
Q ss_pred cch-HHH
Q 001373 837 GSV-EIL 842 (1091)
Q Consensus 837 G~l-Qil 842 (1091)
|-. |-.
T Consensus 335 Gi~~q~~ 341 (703)
T PRK15489 335 GIAFQGW 341 (703)
T ss_pred HHHHhhH
Confidence 987 765
No 28
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=99.83 E-value=5.4e-19 Score=202.11 Aligned_cols=235 Identities=16% Similarity=0.190 Sum_probs=154.8
Q ss_pred CCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCchhhhHHHHhhhHHHhhhhhhhhhhcCCCCCC
Q 001373 363 SDLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRA 442 (1091)
Q Consensus 363 ~~lP~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFCkk~~iepRa 442 (1091)
...|.|.|+||++| |.+ .+.+++.|++++|||. +.++|.||+.++-|.+-+.
T Consensus 38 ~~~p~VSViiP~~n---ee~-~l~~~L~Sl~~q~Yp~--~EIivvdd~s~D~t~~iv~---------------------- 89 (373)
T TIGR03472 38 RAWPPVSVLKPLHG---DEP-ELYENLASFCRQDYPG--FQMLFGVQDPDDPALAVVR---------------------- 89 (373)
T ss_pred CCCCCeEEEEECCC---CCh-hHHHHHHHHHhcCCCC--eEEEEEeCCCCCcHHHHHH----------------------
Confidence 34899999999999 875 5679999999999995 8899999987763332111
Q ss_pred chhhhhhccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCCCCCCCCCchhhhhhhcCC
Q 001373 443 PEWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQN 522 (1091)
Q Consensus 443 Pe~YFs~~~d~~~~~~~~~f~~err~mkreYee~k~rI~~l~~~~~~~p~~~w~m~dg~~w~g~~~rdHp~iiqv~l~~~ 522 (1091)
++.+ +||.
T Consensus 90 ---------------------------------------~~~~------------------------~~p~--------- 97 (373)
T TIGR03472 90 ---------------------------------------RLRA------------------------DFPD--------- 97 (373)
T ss_pred ---------------------------------------HHHH------------------------hCCC---------
Confidence 1110 0100
Q ss_pred CCccccCCccCcEEEEeccCCCCCCCCCcchhhHHHHHhhccccCCCEEEEecCCCCCCcHHHHHHHHHhhcCCCCCcce
Q 001373 523 GVRDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKI 602 (1091)
Q Consensus 523 g~~d~~~~~lP~lvYvsRekRpg~~hh~KAGalNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~v 602 (1091)
.++.++.+.++. ..+.|++|+|++++. +.+++|+++|+|.+ +.|++|++.+..|.|| ++
T Consensus 98 ----------~~i~~v~~~~~~--G~~~K~~~l~~~~~~----a~ge~i~~~DaD~~-~~p~~L~~lv~~~~~~----~v 156 (373)
T TIGR03472 98 ----------ADIDLVIDARRH--GPNRKVSNLINMLPH----ARHDILVIADSDIS-VGPDYLRQVVAPLADP----DV 156 (373)
T ss_pred ----------CceEEEECCCCC--CCChHHHHHHHHHHh----ccCCEEEEECCCCC-cChhHHHHHHHHhcCC----Cc
Confidence 136666544433 245799999998874 68999999999997 6899999999999998 78
Q ss_pred EEEecceeecCCCccccccchhhhhhhhhccccccCCCccccccccchhhhhhcCCCCCCCCCCCCCcCCCCCCcccccc
Q 001373 603 CYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKPPRKTCNCLPKWCCCCC 682 (1091)
Q Consensus 603 a~VQ~PQ~F~nid~~Dry~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~c~ 682 (1091)
+.|+.+.+.. +... +.++....+ .+.. ++-+ .... ...|.
T Consensus 157 ~~V~~~~~~~--~~~~-~~~~l~~~~------~~~~---~~~~--~~~~--~~~~~------------------------ 196 (373)
T TIGR03472 157 GLVTCLYRGR--PVPG-FWSRLGAMG------INHN---FLPS--VMVA--RALGR------------------------ 196 (373)
T ss_pred ceEeccccCC--CCCC-HHHHHHHHH------hhhh---hhHH--HHHH--HhccC------------------------
Confidence 9999864322 1111 111110000 0000 0000 0000 00000
Q ss_pred ccccccccccCCccCCcchhhhhhhhhhhhcccccccccccCCchhhHhhhcCCcHHHHHhhhhhhCCCCCCCChhhHHH
Q 001373 683 RSRKKSKKGKSNKKNKDTSKQIYALENIEEGIEGIDNEKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGASTASLLN 762 (1091)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~~~~~~~~~~l~ 762 (1091)
...-.|++..|++++++++||++..
T Consensus 197 -----------------------------------------------~~~~~G~~~a~RR~~l~~iGGf~~~-------- 221 (373)
T TIGR03472 197 -----------------------------------------------ARFCFGATMALRRATLEAIGGLAAL-------- 221 (373)
T ss_pred -----------------------------------------------CccccChhhheeHHHHHHcCChHHh--------
Confidence 0001355566777777889998531
Q ss_pred hhhhhccccccccCccccccCcccccccchHHHHHHHHHCCcEEEEecCCCCcccccCCCCHHHHHHHHHHHhhcc
Q 001373 763 EAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGS 838 (1091)
Q Consensus 763 ea~~v~sc~YE~~T~WG~evGW~ygsvTEDi~TglrLh~~GWrsvY~~p~~~AF~G~aP~tl~~~l~QR~RWA~G~ 838 (1091)
..+++||++++.+++.+||++.|.+.. .. +...|+|++++++||.||++..
T Consensus 222 -----------------------~~~~~ED~~l~~~i~~~G~~v~~~~~~-v~-~~~~~~s~~~~~~q~~RW~r~~ 272 (373)
T TIGR03472 222 -----------------------AHHLADDYWLGELVRALGLRVVLAPVV-VD-TDVHETSFATLLAHELRWSRTI 272 (373)
T ss_pred -----------------------cccchHHHHHHHHHHHcCCeEEecchh-hh-cCCCccCHHHHHHHHHHHHhhh
Confidence 146789999999999999999998543 33 6778899999999999997543
No 29
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=99.83 E-value=1.8e-20 Score=201.62 Aligned_cols=52 Identities=19% Similarity=0.202 Sum_probs=46.3
Q ss_pred ccccchHHHHHHHHHCCcEEEE--ecCCCCcccccCCCCHHHHHHHHHHHhhcchH
Q 001373 787 GSVTEDILTGFKMHCHGWRSVY--CIPKRPAFKGSAPINLSDRLHQVLRWALGSVE 840 (1091)
Q Consensus 787 gsvTEDi~TglrLh~~GWrsvY--~~p~~~AF~G~aP~tl~~~l~QR~RWA~G~lQ 840 (1091)
.+++||.+++++|..+||++.| ++. ..+ +.++|+|++++++||+||++|++.
T Consensus 190 ~~~~ED~~l~~~l~~~G~~~~~~~~~~-a~~-~~~~p~s~~~~~~QR~RW~~g~~~ 243 (244)
T cd04190 190 LDLGEDRILCTLLLKAGPKRKYLYVPG-AVA-ETDVPETFVELLSQRRRWINSTIA 243 (244)
T ss_pred HhHhcccceeHHHhccCCccEEEEecc-cEE-EEECCCCHHHHHHHhHhhhccccc
Confidence 4789999999999999999999 744 333 899999999999999999999863
No 30
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.81 E-value=6.8e-19 Score=182.74 Aligned_cols=226 Identities=17% Similarity=0.211 Sum_probs=151.4
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCchhhhHHHHhhhHHHhhhhhhhhhhcCCCCCCchhhhhh
Q 001373 370 IFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRAPEWYFAQ 449 (1091)
Q Consensus 370 vfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFCkk~~iepRaPe~YFs~ 449 (1091)
|+|||+| |+ ..+..||.|+++.+||.+++.|+|.|||.+.-|.+.+.
T Consensus 1 viip~~n---~~-~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~----------------------------- 47 (229)
T cd04192 1 VVIAARN---EA-ENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILE----------------------------- 47 (229)
T ss_pred CEEEecC---cH-HHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHHHH-----------------------------
Confidence 6899998 65 78999999999999999889999999998763322111
Q ss_pred ccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCCCCCCCCCchhhhhhhcCCCCccccC
Q 001373 450 KLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVRDIEG 529 (1091)
Q Consensus 450 ~~d~~~~~~~~~f~~err~mkreYee~k~rI~~l~~~~~~~p~~~w~m~dg~~w~g~~~rdHp~iiqv~l~~~g~~d~~~ 529 (1091)
|. ..
T Consensus 48 -----------------------~~--------~~--------------------------------------------- 51 (229)
T cd04192 48 -----------------------FA--------AA--------------------------------------------- 51 (229)
T ss_pred -----------------------HH--------Hh---------------------------------------------
Confidence 00 00
Q ss_pred CccCcEEEEeccCCCCCCCCCcchhhHHHHHhhccccCCCEEEEecCCCCCCcHHHHHHHHHhhcCCCCCcceEEEecce
Q 001373 530 NLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQ 609 (1091)
Q Consensus 530 ~~lP~lvYvsRekRpg~~hh~KAGalNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~va~VQ~PQ 609 (1091)
...|++.++.++. + ....|+.|+|.++.. ++++||+++|+|.+ +.|++|.+.+..|.++ ..+.|+.++
T Consensus 52 ~~~~~v~~~~~~~--~-~~~g~~~a~n~g~~~----~~~d~i~~~D~D~~-~~~~~l~~l~~~~~~~----~~~~v~~~~ 119 (229)
T cd04192 52 KPNFQLKILNNSR--V-SISGKKNALTTAIKA----AKGDWIVTTDADCV-VPSNWLLTFVAFIQKE----QIGLVAGPV 119 (229)
T ss_pred CCCcceEEeeccC--c-ccchhHHHHHHHHHH----hcCCEEEEECCCcc-cCHHHHHHHHHHhhcC----CCcEEeeee
Confidence 0012455555543 1 235789999999885 68999999999997 6899999999977766 677888888
Q ss_pred eecCCCcc-ccccchhhhhhhhhccccccCCCc-cccccccchhhhhhcCCCCCCCCCCCCCcCCCCCCccccccccccc
Q 001373 610 RFDGIDRH-DRYSNRNVVFFDINMKGLDGIQGP-IYVGTGCVFRRQALYGYDAPVKKKPPRKTCNCLPKWCCCCCRSRKK 687 (1091)
Q Consensus 610 ~F~nid~~-Dry~n~~~vFfdi~~~glDg~qgp-~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~c~~~~~~ 687 (1091)
.+...+.. ..+..-...+......+.-+++.+ ...|++.+|||
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr----------------------------------- 164 (229)
T cd04192 120 IYFKGKSLLAKFQRLDWLSLLGLIAGSFGLGKPFMCNGANMAYRK----------------------------------- 164 (229)
T ss_pred eecCCccHHHHHHHHHHHHHHHHHhhHHHhcCccccccceEEEEH-----------------------------------
Confidence 87622111 111110111111111111122222 12233334444
Q ss_pred cccccCCccCCcchhhhhhhhhhhhcccccccccccCCchhhHhhhcCCcHHHHHhhhhhhCCCCCCCChhhHHHhhhhh
Q 001373 688 SKKGKSNKKNKDTSKQIYALENIEEGIEGIDNEKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGASTASLLNEAIHV 767 (1091)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~~~~~~~~~~l~ea~~v 767 (1091)
++++++||++..
T Consensus 165 -------------------------------------------------------~~~~~~ggf~~~------------- 176 (229)
T cd04192 165 -------------------------------------------------------EAFFEVGGFEGN------------- 176 (229)
T ss_pred -------------------------------------------------------HHHHHhcCCccc-------------
Confidence 445678887641
Q ss_pred ccccccccCccccccCcccccccchHHHHHHHHHCCc-EEEEecCCCCcccccCCCCHHHHHHHHHHHhhc
Q 001373 768 ISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGW-RSVYCIPKRPAFKGSAPINLSDRLHQVLRWALG 837 (1091)
Q Consensus 768 ~sc~YE~~T~WG~evGW~ygsvTEDi~TglrLh~~GW-rsvY~~p~~~AF~G~aP~tl~~~l~QR~RWA~G 837 (1091)
....+||.++.+++..+|| ++.|+..+....+...|.+++++++||+||++|
T Consensus 177 ------------------~~~~~eD~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~Rw~~g 229 (229)
T cd04192 177 ------------------DHIASGDDELLLAKVASKYPKVAYLKNPEALVTTQPVTSWKELLNQRKRWASK 229 (229)
T ss_pred ------------------cccccCCHHHHHHHHHhCCCCEEEeeCcchheecCCchhHHHHHHHHHHhhcC
Confidence 2366899999999999999 998874333334789999999999999999987
No 31
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=99.79 E-value=1.3e-18 Score=180.06 Aligned_cols=194 Identities=19% Similarity=0.216 Sum_probs=145.4
Q ss_pred CceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCchhhhHHHHhhhHHHhhhhhhhhhhcCCCCCCchh
Q 001373 366 ADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRAPEW 445 (1091)
Q Consensus 366 P~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFCkk~~iepRaPe~ 445 (1091)
|.|.|+||++| |... +..++-|+++.+||. +.++|.|||++.-|.+.+.+
T Consensus 1 p~vsviip~~n---~~~~-l~~~L~sl~~q~~~~--~eiivVdd~s~d~t~~~~~~------------------------ 50 (196)
T cd02520 1 PGVSILKPLCG---VDPN-LYENLESFFQQDYPK--YEILFCVQDEDDPAIPVVRK------------------------ 50 (196)
T ss_pred CCeEEEEecCC---CCcc-HHHHHHHHHhccCCC--eEEEEEeCCCcchHHHHHHH------------------------
Confidence 67999999998 6654 689999999999985 89999999998744332211
Q ss_pred hhhhccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCCCCCCCCCchhhhhhhcCCCCc
Q 001373 446 YFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVR 525 (1091)
Q Consensus 446 YFs~~~d~~~~~~~~~f~~err~mkreYee~k~rI~~l~~~~~~~p~~~w~m~dg~~w~g~~~rdHp~iiqv~l~~~g~~ 525 (1091)
+.++ ||.
T Consensus 51 -------------------------------------~~~~------------------------~~~------------ 57 (196)
T cd02520 51 -------------------------------------LIAK------------------------YPN------------ 57 (196)
T ss_pred -------------------------------------HHHH------------------------CCC------------
Confidence 1100 000
Q ss_pred cccCCccCcEEEEeccCCCCCCCCCcchhhHHHHHhhccccCCCEEEEecCCCCCCcHHHHHHHHHhhcCCCCCcceEEE
Q 001373 526 DIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYV 605 (1091)
Q Consensus 526 d~~~~~lP~lvYvsRekRpg~~hh~KAGalNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~va~V 605 (1091)
-.+.|+..+++.| ...|++|+|++++. ++++|++++|+|.. ..|++|.+.+..+.+| +++.|
T Consensus 58 -------~~~~~~~~~~~~g--~~~~~~~~n~g~~~----a~~d~i~~~D~D~~-~~~~~l~~l~~~~~~~----~~~~v 119 (196)
T cd02520 58 -------VDARLLIGGEKVG--INPKVNNLIKGYEE----ARYDILVISDSDIS-VPPDYLRRMVAPLMDP----GVGLV 119 (196)
T ss_pred -------CcEEEEecCCcCC--CCHhHHHHHHHHHh----CCCCEEEEECCCce-EChhHHHHHHHHhhCC----CCCeE
Confidence 0234454443222 33689999999985 68999999999997 6899999999988888 67788
Q ss_pred ecceeecCCCccccccchhhhhhhhhccccccCCCccccccccchhhhhhcCCCCCCCCCCCCCcCCCCCCccccccccc
Q 001373 606 QFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKPPRKTCNCLPKWCCCCCRSR 685 (1091)
Q Consensus 606 Q~PQ~F~nid~~Dry~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~c~~~~ 685 (1091)
+.. ...|+++++||+++
T Consensus 120 ~~~---------------------------------~~~g~~~~~r~~~~------------------------------ 136 (196)
T cd02520 120 TCL---------------------------------CAFGKSMALRREVL------------------------------ 136 (196)
T ss_pred Eee---------------------------------cccCceeeeEHHHH------------------------------
Confidence 764 45578888888776
Q ss_pred cccccccCCccCCcchhhhhhhhhhhhcccccccccccCCchhhHhhhcCCcHHHHHhhhhhhCCCCCCCChhhHHHhhh
Q 001373 686 KKSKKGKSNKKNKDTSKQIYALENIEEGIEGIDNEKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGASTASLLNEAI 765 (1091)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~~~~~~~~~~l~ea~ 765 (1091)
+++||++..
T Consensus 137 ------------------------------------------------------------~~~ggf~~~----------- 145 (196)
T cd02520 137 ------------------------------------------------------------DAIGGFEAF----------- 145 (196)
T ss_pred ------------------------------------------------------------HhccChHHH-----------
Confidence 245665320
Q ss_pred hhccccccccCccccccCcccccccchHHHHHHHHHCCcEEEEecCCCCcccccCCCCHHHHHHHHHHHhh
Q 001373 766 HVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWAL 836 (1091)
Q Consensus 766 ~v~sc~YE~~T~WG~evGW~ygsvTEDi~TglrLh~~GWrsvY~~p~~~AF~G~aP~tl~~~l~QR~RWA~ 836 (1091)
...+.||+++++++..+||++.|+.. ..+ +...|.+++++++||.||++
T Consensus 146 --------------------~~~~~eD~~l~~rl~~~G~~i~~~~~-~~~-~~~~~~~~~~~~~q~~rw~~ 194 (196)
T cd02520 146 --------------------ADYLAEDYFLGKLIWRLGYRVVLSPY-VVM-QPLGSTSLASFWRRQLRWSR 194 (196)
T ss_pred --------------------hHHHHHHHHHHHHHHHcCCeEEEcch-hee-ccCCcccHHHHHHHHHHHhc
Confidence 12468999999999999999999954 333 78999999999999999986
No 32
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=99.76 E-value=2.3e-17 Score=173.23 Aligned_cols=59 Identities=27% Similarity=0.200 Sum_probs=52.1
Q ss_pred CCCcchhhHHHHHhhccccCCCEEEEecCCCCCCcHHHHHHHHHhhcCCCCCcceEEEecceeecCCC
Q 001373 548 HHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDGID 615 (1091)
Q Consensus 548 hh~KAGalNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~va~VQ~PQ~F~nid 615 (1091)
+..|++|+|.+++. +.++||+++|+|.+ +.|++|++++..|.|| +++.|+..+.+.+.+
T Consensus 62 ~~g~~~a~n~g~~~----a~~d~v~~lD~D~~-~~~~~l~~l~~~~~~~----~v~~v~~~~~~~~~~ 120 (235)
T cd06434 62 HPGKRRALAEGIRH----VTTDIVVLLDSDTV-WPPNALPEMLKPFEDP----KVGGVGTNQRILRPR 120 (235)
T ss_pred CCChHHHHHHHHHH----hCCCEEEEECCCce-eChhHHHHHHHhccCC----CEeEEcCceEeecCc
Confidence 34599999999985 58999999999998 7899999999988888 899999999887764
No 33
>COG2943 MdoH Membrane glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.74 E-value=1.1e-14 Score=167.31 Aligned_cols=214 Identities=21% Similarity=0.332 Sum_probs=157.1
Q ss_pred cEEEEeccCCCCCCCCCcchhhHHHHHhhccccCCCEEEEecCCCCCCcHHHHHHHHHhh-cCCCCCcceEEEecceeec
Q 001373 534 RLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFM-MDPTSGKKICYVQFPQRFD 612 (1091)
Q Consensus 534 ~lvYvsRekRpg~~hh~KAGalNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff-~Dp~~g~~va~VQ~PQ~F~ 612 (1091)
++.|-.|.+ |-..||||+-...|--| +...|+++||||.++ ..+.+-+.+-.| .+| +.|.+||--.--
T Consensus 213 ~ifYRrRr~----n~~RKaGNIaDfcrRwG--~~Y~~MlVLDADSvM-tgd~lvrLv~~ME~~P----~aGlIQt~P~~~ 281 (736)
T COG2943 213 NIFYRRRRR----NVKRKAGNIADFCRRWG--SAYSYMLVLDADSVM-TGDCLVRLVRLMEANP----DAGLIQTSPKAS 281 (736)
T ss_pred ceeeehHhh----hhcccccCHHHHHHHhC--cccceEEEeeccccc-CchHHHHHHHHHhhCC----CCceeecchhhc
Confidence 467776666 56799999999999877 788999999999985 778888888877 577 899999943333
Q ss_pred CCCccccccc----hhhhhhhhhccccccCCC--ccccccccchhhhhhcCCCCCCCCCCCCCcCCCCCCcccccccccc
Q 001373 613 GIDRHDRYSN----RNVVFFDINMKGLDGIQG--PIYVGTGCVFRRQALYGYDAPVKKKPPRKTCNCLPKWCCCCCRSRK 686 (1091)
Q Consensus 613 nid~~Dry~n----~~~vFfdi~~~glDg~qg--p~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~c~~~~~ 686 (1091)
|.| ..|+- ..+|+=-+.--|+.-||+ .-|.|.|++.|-+|+-. -|.-..-
T Consensus 282 gg~--TL~AR~qQFatrvYGpl~~~GLawW~~~Es~yWGHNAIIRt~aF~~----------------------hcgLp~L 337 (736)
T COG2943 282 GGD--TLYARCQQFATRVYGPLFTAGLAWWQLGESHYWGHNAIIRTKAFIE----------------------HCGLPPL 337 (736)
T ss_pred Ccc--hHHHHHHHHHHHHhchHHhhhhHHHhccccccccccceeechhhHH----------------------hcCCCCC
Confidence 332 22322 134555566778888887 48999999999998831 0110000
Q ss_pred ccccccCCccCCcchhhhhhhhhhhhcccccccccccCCchhhHhhhcCCcHHHHHhhhhhhCCCCCCCChhhHHHhhhh
Q 001373 687 KSKKGKSNKKNKDTSKQIYALENIEEGIEGIDNEKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGASTASLLNEAIH 766 (1091)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~~~~~~~~~~l~ea~~ 766 (1091)
+|. ...||
T Consensus 338 ----------------------------pG~----------------------------~pFgG---------------- 345 (736)
T COG2943 338 ----------------------------PGR----------------------------GPFGG---------------- 345 (736)
T ss_pred ----------------------------CCC----------------------------CCCCc----------------
Confidence 000 01344
Q ss_pred hccccccccCccccccCcccccccchHHHHHHHHHCCcEEEEecCCCCcccccCCCCHHHHHHHHHHHhhcchHHHhhhc
Q 001373 767 VISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEILLSRH 846 (1091)
Q Consensus 767 v~sc~YE~~T~WG~evGW~ygsvTEDi~TglrLh~~GWrsvY~~p~~~AF~G~aP~tl~~~l~QR~RWA~G~lQil~sk~ 846 (1091)
..++.|+.-+-.|.+.||.+--. +++...|++.|.|+-|++++-+|||+|++|-+.
T Consensus 346 --------------------~ilSHDfvEAALmRRaGW~v~ia-~dL~GSyEE~PpnLlD~l~RDRRWC~GNLqh~r--- 401 (736)
T COG2943 346 --------------------HILSHDFVEAALMRRAGWGVWIA-YDLDGSYEELPPNLLDELKRDRRWCHGNLQHFR--- 401 (736)
T ss_pred --------------------cccchHHHHHHHHhhcCceEEEe-ccCCCchhhCCchHHHHHhhhhHhhhcchhhce---
Confidence 26788999999999999965544 677777999999999999999999999999873
Q ss_pred cccccccCCCCCccccchhhhhhhHHhHHHHHHHHH
Q 001373 847 CPIWYGYGCGLKPLERFSYINSVVYPITSIPLIAYC 882 (1091)
Q Consensus 847 ~Pl~~g~~~~L~~~QRL~Yl~~~ly~l~sl~~liyl 882 (1091)
++. .++|.|..|+.++.+++.|+++-..++++
T Consensus 402 --l~~--~~GlHwvsR~h~~tGVmsYlsaPlWfl~l 433 (736)
T COG2943 402 --LFL--VKGLHWVSRAHFLTGVMSYLSAPLWFLFL 433 (736)
T ss_pred --eec--cCCccHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 441 58999999999999888777654433333
No 34
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=99.74 E-value=8.9e-17 Score=171.02 Aligned_cols=127 Identities=23% Similarity=0.318 Sum_probs=97.7
Q ss_pred CCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCchhhhHHHHhhhHHHhhhhhhhhhhcCCCCC
Q 001373 362 PSDLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPR 441 (1091)
Q Consensus 362 ~~~lP~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFCkk~~iepR 441 (1091)
.+..|.|.|+|||+| |+ ..+..++.|+++.+||.+++.++|+|||+++-|.+.+.
T Consensus 25 ~~~~~~isVvip~~n---~~-~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~--------------------- 79 (251)
T cd06439 25 PAYLPTVTIIIPAYN---EE-AVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAR--------------------- 79 (251)
T ss_pred CCCCCEEEEEEecCC---cH-HHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHH---------------------
Confidence 456899999999998 65 67899999999999998889999999998863322110
Q ss_pred CchhhhhhccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCCCCCCCCCchhhhhhhcC
Q 001373 442 APEWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQ 521 (1091)
Q Consensus 442 aPe~YFs~~~d~~~~~~~~~f~~err~mkreYee~k~rI~~l~~~~~~~p~~~w~m~dg~~w~g~~~rdHp~iiqv~l~~ 521 (1091)
+|.+
T Consensus 80 ------------------------------~~~~---------------------------------------------- 83 (251)
T cd06439 80 ------------------------------EYAD---------------------------------------------- 83 (251)
T ss_pred ------------------------------HHhh----------------------------------------------
Confidence 1100
Q ss_pred CCCccccCCccCcEEEEeccCCCCCCCCCcchhhHHHHHhhccccCCCEEEEecCCCCCCcHHHHHHHHHhhcCCCCCcc
Q 001373 522 NGVRDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKK 601 (1091)
Q Consensus 522 ~g~~d~~~~~lP~lvYvsRekRpg~~hh~KAGalNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~ 601 (1091)
. ++.++..+++ ..|++|+|.+++. +++++|+++|+|.+ +.|++|++.+..|.++ +
T Consensus 84 ---------~--~v~~i~~~~~-----~g~~~a~n~gi~~----a~~d~i~~lD~D~~-~~~~~l~~l~~~~~~~----~ 138 (251)
T cd06439 84 ---------K--GVKLLRFPER-----RGKAAALNRALAL----ATGEIVVFTDANAL-LDPDALRLLVRHFADP----S 138 (251)
T ss_pred ---------C--cEEEEEcCCC-----CChHHHHHHHHHH----cCCCEEEEEccccC-cCHHHHHHHHHHhcCC----C
Confidence 0 1444544442 3599999999985 57899999999998 5699999999998877 7
Q ss_pred eEEEecceeecCC
Q 001373 602 ICYVQFPQRFDGI 614 (1091)
Q Consensus 602 va~VQ~PQ~F~ni 614 (1091)
+++|+......+.
T Consensus 139 ~~~v~~~~~~~~~ 151 (251)
T cd06439 139 VGAVSGELVIVDG 151 (251)
T ss_pred ccEEEeEEEecCC
Confidence 8899987766543
No 35
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=99.72 E-value=6.1e-16 Score=177.87 Aligned_cols=133 Identities=22% Similarity=0.204 Sum_probs=93.6
Q ss_pred CCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCchhhhHHHHhhhHHHhhhhhhhhhhcCCCCC
Q 001373 362 PSDLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPR 441 (1091)
Q Consensus 362 ~~~lP~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFCkk~~iepR 441 (1091)
++..|.|.|+||++| |. ..+..++-|+++.|||. ++.|+|.|||.++-|.+-+.+
T Consensus 36 ~~~~p~VSVIIpa~N---e~-~~L~~~L~sL~~q~yp~-~~eIIVVDd~StD~T~~i~~~-------------------- 90 (384)
T TIGR03469 36 PEAWPAVVAVVPARN---EA-DVIGECVTSLLEQDYPG-KLHVILVDDHSTDGTADIARA-------------------- 90 (384)
T ss_pred CCCCCCEEEEEecCC---cH-hHHHHHHHHHHhCCCCC-ceEEEEEeCCCCCcHHHHHHH--------------------
Confidence 457899999999998 76 67889999999999995 589999999998744332211
Q ss_pred CchhhhhhccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCCCCCCCCCchhhhhhhcC
Q 001373 442 APEWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQ 521 (1091)
Q Consensus 442 aPe~YFs~~~d~~~~~~~~~f~~err~mkreYee~k~rI~~l~~~~~~~p~~~w~m~dg~~w~g~~~rdHp~iiqv~l~~ 521 (1091)
+.++ .|.
T Consensus 91 -----------------------------------------~~~~---~~~----------------------------- 97 (384)
T TIGR03469 91 -----------------------------------------AARA---YGR----------------------------- 97 (384)
T ss_pred -----------------------------------------HHHh---cCC-----------------------------
Confidence 0000 000
Q ss_pred CCCccccCCccCcEEEEeccCCCCCCCCCcchhhHHHHHhhcccc-CCCEEEEecCCCCCCcHHHHHHHHHhhcCCCCCc
Q 001373 522 NGVRDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVIS-NAPYLLNVDCDHYINNSKALREAMCFMMDPTSGK 600 (1091)
Q Consensus 522 ~g~~d~~~~~lP~lvYvsRekRpg~~hh~KAGalNallrvSav~t-ngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~ 600 (1091)
-+++.++..+.+|. .-..|+.|+|.+++.+.... .+++|+.+|+|.. ++|++|++++..+.++
T Consensus 98 ----------~~~i~vi~~~~~~~-g~~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~~-~~p~~l~~lv~~~~~~---- 161 (384)
T TIGR03469 98 ----------GDRLTVVSGQPLPP-GWSGKLWAVSQGIAAARTLAPPADYLLLTDADIA-HGPDNLARLVARARAE---- 161 (384)
T ss_pred ----------CCcEEEecCCCCCC-CCcchHHHHHHHHHHHhccCCCCCEEEEECCCCC-CChhHHHHHHHHHHhC----
Confidence 01355555433332 34578999999998642111 1899999999997 7899999999988876
Q ss_pred ceEEEecc
Q 001373 601 KICYVQFP 608 (1091)
Q Consensus 601 ~va~VQ~P 608 (1091)
++++|..+
T Consensus 162 ~~~~vs~~ 169 (384)
T TIGR03469 162 GLDLVSLM 169 (384)
T ss_pred CCCEEEec
Confidence 45555543
No 36
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=99.65 E-value=7.4e-15 Score=154.48 Aligned_cols=54 Identities=13% Similarity=0.081 Sum_probs=47.6
Q ss_pred ccchHHHHHHHHHCCcEEEEecCCCCcccccCCCCHHHHHHHHHHHhhcchHHHhh
Q 001373 789 VTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEILLS 844 (1091)
Q Consensus 789 vTEDi~TglrLh~~GWrsvY~~p~~~AF~G~aP~tl~~~l~QR~RWA~G~lQil~s 844 (1091)
..||.+++++++.+|+++.|++. ..+ ....|.+++.+++|+.||+.|..|.+..
T Consensus 180 ~~eD~~l~~r~~~~G~~~~~~~~-~~~-~~~~~~s~~~~~~~~~r~~~~~~~~~~~ 233 (249)
T cd02525 180 RNEDAELNYRLRKAGYKIWLSPD-IRV-YYYPRSTLKKLARQYFRYGKWRARTLRK 233 (249)
T ss_pred ccchhHHHHHHHHcCcEEEEcCC-eEE-EEcCCCCHHHHHHHHHHHhhhhHHHHHh
Confidence 46999999999999999999954 333 6778899999999999999999999974
No 37
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=99.63 E-value=2.6e-15 Score=154.36 Aligned_cols=138 Identities=29% Similarity=0.413 Sum_probs=104.5
Q ss_pred EEEEecCCCCCCcHHHHHHHHHhhcCCCCCcceEEEecceeecCCCccccccchhhhhhhhhc----cccccCC-Ccccc
Q 001373 570 YLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINM----KGLDGIQ-GPIYV 644 (1091)
Q Consensus 570 ~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~va~VQ~PQ~F~nid~~Dry~n~~~vFfdi~~----~glDg~q-gp~yv 644 (1091)
||+++|+|.. +.+++|++++.+|.|| +++.||+|+.+++ .++...+.+.++|.... ...+..+ .....
T Consensus 1 ~v~~~DaDt~-~~~d~l~~~~~~~~~~----~~~~vq~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (193)
T PF13632_consen 1 YVLFLDADTR-LPPDFLERLVAALEDP----KVDAVQGPIIFRN--RGSLLTRLQDFEYAISHGLSRLSQSSLGRPLFLS 73 (193)
T ss_pred CEEEEcCCCC-CChHHHHHHHHHHhCC----CceEEEccEEecC--CCChhheeehhhhhhhhhhhHHHHHhcCCCcccc
Confidence 6899999998 6899999999998888 8999999999863 34445555555553221 1111222 23456
Q ss_pred ccccchhhhhhcCCCCCCCCCCCCCcCCCCCCccccccccccccccccCCccCCcchhhhhhhhhhhhcccccccccccC
Q 001373 645 GTGCVFRRQALYGYDAPVKKKPPRKTCNCLPKWCCCCCRSRKKSKKGKSNKKNKDTSKQIYALENIEEGIEGIDNEKSSL 724 (1091)
Q Consensus 645 GTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (1091)
|+|.++||+|+
T Consensus 74 G~~~~~r~~~l--------------------------------------------------------------------- 84 (193)
T PF13632_consen 74 GSGMLFRREAL--------------------------------------------------------------------- 84 (193)
T ss_pred CcceeeeHHHH---------------------------------------------------------------------
Confidence 77777777666
Q ss_pred CchhhHhhhcCCcHHHHHhhhhhhCCCCCCCChhhHHHhhhhhccccccccCccccccCcccccccchHHHHHHHHHCCc
Q 001373 725 MPQIKFEKKFGQSPVFIASTLKEAGGVPTGASTASLLNEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGW 804 (1091)
Q Consensus 725 ~~~~~~~~~fG~s~~f~~S~l~e~GG~~~~~~~~~~l~ea~~v~sc~YE~~T~WG~evGW~ygsvTEDi~TglrLh~~GW 804 (1091)
+++||++. ..+++||+++++++.++||
T Consensus 85 ---------------------~~vg~~~~--------------------------------~~~~~ED~~l~~~l~~~G~ 111 (193)
T PF13632_consen 85 ---------------------REVGGFDD--------------------------------PFSIGEDMDLGFRLRRAGY 111 (193)
T ss_pred ---------------------HHhCcccc--------------------------------cccccchHHHHHHHHHCCC
Confidence 45675430 4689999999999999999
Q ss_pred EEEEecCCCCcccccCCCCHHHHHHHHHHHhhcc
Q 001373 805 RSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGS 838 (1091)
Q Consensus 805 rsvY~~p~~~AF~G~aP~tl~~~l~QR~RWA~G~ 838 (1091)
++.|++... ++..+|.|+.++++||+||+.|.
T Consensus 112 ~~~~~~~~~--~~~~~p~t~~~~~~Qr~RW~~g~ 143 (193)
T PF13632_consen 112 RIVYVPDAI--VYTEAPPTFRAFIRQRRRWARGA 143 (193)
T ss_pred EEEEecccc--eeeeCCCCHHHHHHHHHHHHhhh
Confidence 999995542 38999999999999999999998
No 38
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=99.51 E-value=1.3e-13 Score=142.79 Aligned_cols=115 Identities=17% Similarity=0.107 Sum_probs=81.3
Q ss_pred cEEEEeccCCCCCCCCCcchhhHHHHHhhc-------cccCCCEEEEecCCCCCCcHHHHHHHHHhhcCCCCCcceEEEe
Q 001373 534 RLVYVSREKRPGFDHHKKAGAMNALIRVSA-------VISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQ 606 (1091)
Q Consensus 534 ~lvYvsRekRpg~~hh~KAGalNallrvSa-------v~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~va~VQ 606 (1091)
++.++.++... ....|++|+|++++.+. .-..+++|+++|+|.. +.|++|++++.+|.|| +++.||
T Consensus 51 ~v~~i~~~~~~--~~~Gk~~aln~g~~~~~~~~~~~g~~~~~d~v~~~DaD~~-~~~~~l~~~~~~~~~~----~v~~v~ 123 (191)
T cd06436 51 RVHLLRRHLPN--ARTGKGDALNAAYDQIRQILIEEGADPERVIIAVIDADGR-LDPNALEAVAPYFSDP----RVAGTQ 123 (191)
T ss_pred cEEEEeccCCc--CCCCHHHHHHHHHHHHhhhccccccCCCccEEEEECCCCC-cCHhHHHHHHHhhcCC----ceEEEe
Confidence 46677664311 23469999999998631 0012489999999997 7999999988899898 899999
Q ss_pred cceeecCCCccc--cc-cchhhhhhhhhccccccCCCccccccccchhhhhh
Q 001373 607 FPQRFDGIDRHD--RY-SNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQAL 655 (1091)
Q Consensus 607 ~PQ~F~nid~~D--ry-~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~AL 655 (1091)
.+.++.|.+.+- ++ ..+...++.+++.++.......+.|+|++|||+||
T Consensus 124 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~G~~~~~r~~~l 175 (191)
T cd06436 124 SRVRMYNRHKNLLTILQDLEFFIIIAATQSLRALTGTVGLGGNGQFMRLSAL 175 (191)
T ss_pred eeEEEecCCCCHHHHHHHHHHHHHHHHHHHHHHhcCcEEECCeeEEEeHHHH
Confidence 999998865431 11 12333344455666655555557899999999887
No 39
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=99.38 E-value=2e-12 Score=132.32 Aligned_cols=102 Identities=20% Similarity=0.123 Sum_probs=64.0
Q ss_pred CCCcchhhHHHHHhhc-cccCCCEEEEecCCCCCCcHHHHHHHHHhhcCCCCCcceEEEecceeecCCCcccc---ccch
Q 001373 548 HHKKAGAMNALIRVSA-VISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDGIDRHDR---YSNR 623 (1091)
Q Consensus 548 hh~KAGalNallrvSa-v~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~va~VQ~PQ~F~nid~~Dr---y~n~ 623 (1091)
+..|++|+|.+++... .-+++++|+++|+|.. +.|++|++++..|.+. ...||......+.+.+-. +.-.
T Consensus 61 ~~gk~~aln~g~~~a~~~~~~~d~v~~~DaD~~-~~p~~l~~l~~~~~~~-----~~~v~g~~~~~~~~~~~~~~~~~~~ 134 (183)
T cd06438 61 RRGKGYALDFGFRHLLNLADDPDAVVVFDADNL-VDPNALEELNARFAAG-----ARVVQAYYNSKNPDDSWITRLYAFA 134 (183)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCEEEEEcCCCC-CChhHHHHHHHHHhhC-----CCeeEEEEeeeCCccCHHHHHHHHH
Confidence 4469999999988631 1247999999999998 6899999999988653 246888776665433211 1111
Q ss_pred hhhhhhhhccccccCCCc-cccccccchhhhhh
Q 001373 624 NVVFFDINMKGLDGIQGP-IYVGTGCVFRRQAL 655 (1091)
Q Consensus 624 ~~vFfdi~~~glDg~qgp-~yvGTgcvfRR~AL 655 (1091)
..+++.+...++..+.+. ...|+|.+|||++|
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~l 167 (183)
T cd06438 135 FLVFNRLRPLGRSNLGLSCQLGGTGMCFPWAVL 167 (183)
T ss_pred HHHHHHHHHHHHHHcCCCeeecCchhhhHHHHH
Confidence 222223333344444433 44677777777665
No 40
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.36 E-value=1.4e-11 Score=126.47 Aligned_cols=121 Identities=20% Similarity=0.269 Sum_probs=88.4
Q ss_pred CceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCchhhhHHHHhhhHHHhhhhhhhhhhcCCCCCCchh
Q 001373 366 ADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRAPEW 445 (1091)
Q Consensus 366 P~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFCkk~~iepRaPe~ 445 (1091)
|.|.|+|||+| |.+..+.+|+.|+++.+|| .+.|+|+|||...-|.+.+.
T Consensus 1 p~vsiii~~~n---~~~~~l~~~l~sl~~q~~~--~~eiivvd~gs~d~~~~~~~------------------------- 50 (202)
T cd04184 1 PLISIVMPVYN---TPEKYLREAIESVRAQTYP--NWELCIADDASTDPEVKRVL------------------------- 50 (202)
T ss_pred CeEEEEEeccc---CcHHHHHHHHHHHHhCcCC--CeEEEEEeCCCCChHHHHHH-------------------------
Confidence 67999999998 6667889999999999998 47899999998652221110
Q ss_pred hhhhccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCCCCCCCCCchhhhhhhcCCCCc
Q 001373 446 YFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVR 525 (1091)
Q Consensus 446 YFs~~~d~~~~~~~~~f~~err~mkreYee~k~rI~~l~~~~~~~p~~~w~m~dg~~w~g~~~rdHp~iiqv~l~~~g~~ 525 (1091)
++| ..
T Consensus 51 -------------------------~~~----------~~---------------------------------------- 55 (202)
T cd04184 51 -------------------------KKY----------AA---------------------------------------- 55 (202)
T ss_pred -------------------------HHH----------Hh----------------------------------------
Confidence 011 00
Q ss_pred cccCCccCcEEEEeccCCCCCCCCCcchhhHHHHHhhccccCCCEEEEecCCCCCCcHHHHHHHHHhh-cCCCCCcceEE
Q 001373 526 DIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFM-MDPTSGKKICY 604 (1091)
Q Consensus 526 d~~~~~lP~lvYvsRekRpg~~hh~KAGalNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff-~Dp~~g~~va~ 604 (1091)
..+++.++..+. ...++.|+|.+++. +.++||+.+|+|.+ +.|++|.+++-.| .+| ++++
T Consensus 56 -----~~~~~~~~~~~~-----~~g~~~a~n~g~~~----a~~d~i~~ld~D~~-~~~~~l~~~~~~~~~~~----~~~~ 116 (202)
T cd04184 56 -----QDPRIKVVFREE-----NGGISAATNSALEL----ATGEFVALLDHDDE-LAPHALYEVVKALNEHP----DADL 116 (202)
T ss_pred -----cCCCEEEEEccc-----CCCHHHHHHHHHHh----hcCCEEEEECCCCc-CChHHHHHHHHHHHhCC----CCCE
Confidence 001345555443 33589999999985 57899999999997 7999999999977 777 6677
Q ss_pred Eeccee
Q 001373 605 VQFPQR 610 (1091)
Q Consensus 605 VQ~PQ~ 610 (1091)
|+....
T Consensus 117 v~~~~~ 122 (202)
T cd04184 117 IYSDED 122 (202)
T ss_pred EEccHH
Confidence 766443
No 41
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.31 E-value=5.5e-11 Score=122.15 Aligned_cols=66 Identities=18% Similarity=0.150 Sum_probs=52.4
Q ss_pred EEEEeccCCCCCCCCCcchhhHHHHHhhccccCCCEEEEecCCCCCCcHHHHHHHHHhhc-CCCCCcceEEEecceeecC
Q 001373 535 LVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMM-DPTSGKKICYVQFPQRFDG 613 (1091)
Q Consensus 535 lvYvsRekRpg~~hh~KAGalNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~-Dp~~g~~va~VQ~PQ~F~n 613 (1091)
+.|+.+++. ..+++|+|.+++. +.|+||+++|+|.+ ..|++|.+++.+|. +| ++++|.......+
T Consensus 57 i~~i~~~~n-----~G~~~a~N~g~~~----a~gd~i~~lD~Dd~-~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~~ 122 (201)
T cd04195 57 LKVVPLEKN-----RGLGKALNEGLKH----CTYDWVARMDTDDI-SLPDRFEKQLDFIEKNP----EIDIVGGGVLEFD 122 (201)
T ss_pred eEEEEcCcc-----ccHHHHHHHHHHh----cCCCEEEEeCCccc-cCcHHHHHHHHHHHhCC----CeEEEcccEEEEC
Confidence 566776653 3589999999985 68999999999997 68999999999874 56 7888887765543
Q ss_pred C
Q 001373 614 I 614 (1091)
Q Consensus 614 i 614 (1091)
.
T Consensus 123 ~ 123 (201)
T cd04195 123 S 123 (201)
T ss_pred C
Confidence 3
No 42
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=99.21 E-value=5.3e-11 Score=123.67 Aligned_cols=61 Identities=20% Similarity=0.127 Sum_probs=51.9
Q ss_pred CCCCcchhhHHHHHhhccccCCCEEEEecCCCCCCcHHHHHHHHHhhcCCCCCcceEEEecceeecCCC
Q 001373 547 DHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDGID 615 (1091)
Q Consensus 547 ~hh~KAGalNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~va~VQ~PQ~F~nid 615 (1091)
.-+.|..||.++++. ...+++|+++|+|+. .+|++|++.+.-|.|| ++++|..+.++.+.+
T Consensus 14 g~N~Kv~nL~~~~~~---~a~~d~~~~~DsDi~-v~p~~L~~lv~~l~~p----~vglVt~~~~~~~~~ 74 (175)
T PF13506_consen 14 GCNPKVNNLAQGLEA---GAKYDYLVISDSDIR-VPPDYLRELVAPLADP----GVGLVTGLPRGVPAR 74 (175)
T ss_pred CCChHHHHHHHHHHh---hCCCCEEEEECCCee-ECHHHHHHHHHHHhCC----CCcEEEecccccCCc
Confidence 357899999999884 269999999999998 5899999999999999 899998876655443
No 43
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.16 E-value=6.6e-10 Score=112.41 Aligned_cols=55 Identities=18% Similarity=0.076 Sum_probs=43.7
Q ss_pred CcchhhHHHHHhhccccCCCEEEEecCCCCCCcHHHHHHHHH-hhcCCCCCcceEEEecceeecC
Q 001373 550 KKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMC-FMMDPTSGKKICYVQFPQRFDG 613 (1091)
Q Consensus 550 ~KAGalNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amc-ff~Dp~~g~~va~VQ~PQ~F~n 613 (1091)
.+++|+|.+++. ++++||+++|+|.. ..++.+.+.+. +..++ ++.+|.....+.+
T Consensus 62 g~~~a~n~~~~~----a~~~~v~~ld~D~~-~~~~~~~~~~~~~~~~~----~~~~v~g~~~~~~ 117 (202)
T cd06433 62 GIYDAMNKGIAL----ATGDIIGFLNSDDT-LLPGALLAVVAAFAEHP----EVDVVYGDVLLVD 117 (202)
T ss_pred CHHHHHHHHHHH----cCCCEEEEeCCCcc-cCchHHHHHHHHHHhCC----CccEEEeeeEEEc
Confidence 589999999985 68999999999998 57899999984 55666 5667776655543
No 44
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.08 E-value=2e-09 Score=110.89 Aligned_cols=65 Identities=15% Similarity=0.183 Sum_probs=50.1
Q ss_pred EEEEeccCCCCCCCCCcchhhHHHHHhhccccCCCEEEEecCCCCCCcHHHHHHHHHh-hcCCCCCcceEEEecceeecC
Q 001373 535 LVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCF-MMDPTSGKKICYVQFPQRFDG 613 (1091)
Q Consensus 535 lvYvsRekRpg~~hh~KAGalNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcf-f~Dp~~g~~va~VQ~PQ~F~n 613 (1091)
++++..++ .+.+++|+|.+++. ++|+||+++|+|-+ ..|+.|.+.+-. +.+| +.+++.....+.+
T Consensus 56 ~~~~~~~~-----~~G~~~~~n~g~~~----~~g~~v~~ld~Dd~-~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~~ 121 (214)
T cd04196 56 IILIRNGK-----NLGVARNFESLLQA----ADGDYVFFCDQDDI-WLPDKLERLLKAFLKDD----KPLLVYSDLELVD 121 (214)
T ss_pred EEEEeCCC-----CccHHHHHHHHHHh----CCCCEEEEECCCcc-cChhHHHHHHHHHhcCC----CceEEecCcEEEC
Confidence 44555554 34589999999884 68999999999997 689999999997 5565 6777888765543
No 45
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.07 E-value=4.2e-09 Score=109.67 Aligned_cols=40 Identities=18% Similarity=0.253 Sum_probs=34.4
Q ss_pred eeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCchh
Q 001373 368 IDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAM 413 (1091)
Q Consensus 368 VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ 413 (1091)
|.|+||++| |+. .+..++.|+++..|+ ...++|.|||...
T Consensus 1 vsvii~~~n---~~~-~l~~~l~sl~~q~~~--~~evivvdd~s~d 40 (221)
T cd02522 1 LSIIIPTLN---EAE-NLPRLLASLRRLNPL--PLEIIVVDGGSTD 40 (221)
T ss_pred CEEEEEccC---cHH-HHHHHHHHHHhccCC--CcEEEEEeCCCCc
Confidence 579999998 764 779999999999984 6789999999865
No 46
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=99.07 E-value=5.9e-09 Score=115.52 Aligned_cols=109 Identities=18% Similarity=0.127 Sum_probs=82.8
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCchhhhHHHHhhhHHHhhhhhhhhhhcCCCCCCchhhhhh
Q 001373 370 IFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRAPEWYFAQ 449 (1091)
Q Consensus 370 vfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFCkk~~iepRaPe~YFs~ 449 (1091)
|+|||+| |++..+.+|+.|+++..||.....|+|.|||.+.-|.+.+.+
T Consensus 2 IIIp~~N---~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~---------------------------- 50 (299)
T cd02510 2 VIIIFHN---EALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLE---------------------------- 50 (299)
T ss_pred EEEEEec---CcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHH----------------------------
Confidence 8999999 888999999999999999865678999999998743332111
Q ss_pred ccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCCCCCCCCCchhhhhhhcCCCCccccC
Q 001373 450 KLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVRDIEG 529 (1091)
Q Consensus 450 ~~d~~~~~~~~~f~~err~mkreYee~k~rI~~l~~~~~~~p~~~w~m~dg~~w~g~~~rdHp~iiqv~l~~~g~~d~~~ 529 (1091)
+.. .
T Consensus 51 -------------------------~~~---------------------------------------------------~ 54 (299)
T cd02510 51 -------------------------EYY---------------------------------------------------K 54 (299)
T ss_pred -------------------------HHH---------------------------------------------------h
Confidence 000 0
Q ss_pred CccCcEEEEeccCCCCCCCCCcchhhHHHHHhhccccCCCEEEEecCCCCCCcHHHHHHHHHhhcC
Q 001373 530 NLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMD 595 (1091)
Q Consensus 530 ~~lP~lvYvsRekRpg~~hh~KAGalNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~D 595 (1091)
...|++.++..++ ...++.|.|.+++. +.|+||+.+|+|.. +.|++|.+.+-.+..
T Consensus 55 ~~~~~v~vi~~~~-----n~G~~~a~N~g~~~----A~gd~i~fLD~D~~-~~~~wL~~ll~~l~~ 110 (299)
T cd02510 55 KYLPKVKVLRLKK-----REGLIRARIAGARA----ATGDVLVFLDSHCE-VNVGWLEPLLARIAE 110 (299)
T ss_pred hcCCcEEEEEcCC-----CCCHHHHHHHHHHH----ccCCEEEEEeCCcc-cCccHHHHHHHHHHh
Confidence 0123466676654 23588999999995 68999999999998 589999999987754
No 47
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=99.06 E-value=7.1e-11 Score=97.82 Aligned_cols=48 Identities=35% Similarity=1.025 Sum_probs=30.5
Q ss_pred ccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhcc
Q 001373 39 CQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1091)
Q Consensus 39 C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Yk 89 (1091)
|.+|.+++ +++|..|.+| ||+|.|||.||...++++++.||+||++||
T Consensus 1 cp~C~e~~--d~~d~~~~PC-~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y~ 48 (48)
T PF14570_consen 1 CPLCDEEL--DETDKDFYPC-ECGFQICRFCYHDILENEGGRCPGCREPYK 48 (48)
T ss_dssp -TTTS-B----CCCTT--SS-TTS----HHHHHHHTTSS-SB-TTT--B--
T ss_pred CCCccccc--ccCCCccccC-cCCCcHHHHHHHHHHhccCCCCCCCCCCCC
Confidence 67899997 8899999999 999999999999999989999999999996
No 48
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=99.04 E-value=5.9e-09 Score=105.29 Aligned_cols=42 Identities=21% Similarity=0.367 Sum_probs=36.9
Q ss_pred CCcchhhHHHHHhhccccCCCEEEEecCCCCCCcHHHHHHHHHhhcCC
Q 001373 549 HKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDP 596 (1091)
Q Consensus 549 h~KAGalNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp 596 (1091)
..|++|+|.+++. ++|+||+.+|+|.. +.|++|++.+-++ ++
T Consensus 65 ~~~~~~~n~g~~~----a~g~~i~~lD~D~~-~~~~~l~~~~~~~-~~ 106 (182)
T cd06420 65 FRKAKIRNKAIAA----AKGDYLIFIDGDCI-PHPDFIADHIELA-EP 106 (182)
T ss_pred hhHHHHHHHHHHH----hcCCEEEEEcCCcc-cCHHHHHHHHHHh-CC
Confidence 3689999999985 68999999999997 7899999999887 44
No 49
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.01 E-value=6.4e-09 Score=102.16 Aligned_cols=51 Identities=24% Similarity=0.171 Sum_probs=41.4
Q ss_pred CCcchhhHHHHHhhccccCCCEEEEecCCCCCCcHHHHHHHHHhhc-CCCCCcceEEEecc
Q 001373 549 HKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMM-DPTSGKKICYVQFP 608 (1091)
Q Consensus 549 h~KAGalNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~-Dp~~g~~va~VQ~P 608 (1091)
..+++|+|.+++. .++++|+.+|+|.+ +.++++.+.+-.+. +| +++.|+..
T Consensus 60 ~g~~~a~n~~~~~----~~~~~i~~~D~D~~-~~~~~l~~~~~~~~~~~----~~~~~~~~ 111 (166)
T cd04186 60 LGFGAGNNQGIRE----AKGDYVLLLNPDTV-VEPGALLELLDAAEQDP----DVGIVGPK 111 (166)
T ss_pred cChHHHhhHHHhh----CCCCEEEEECCCcE-ECccHHHHHHHHHHhCC----CceEEEcc
Confidence 4689999999985 48999999999998 68999999997554 44 67776655
No 50
>PF03142 Chitin_synth_2: Chitin synthase; InterPro: IPR004835 Chitin synthase (2.4.1.16 from EC), also known as chitin-UDP acetyl-glucosaminyl transferase, is a plasma membrane-bound protein which catalyses the conversion of UDP-N-acettyl-D-glucosamine and {(1,4)-(N-acetyl- beta-D-glucosaminyl)}(N) to UDP and {(1,4)-(N-acetyl-beta-D- glucosaminyl)}(N+1). It plays a major role in cell wall biogenesis. ; GO: 0016758 transferase activity, transferring hexosyl groups
Probab=98.96 E-value=1.3e-07 Score=113.18 Aligned_cols=53 Identities=25% Similarity=0.283 Sum_probs=44.1
Q ss_pred cccchHHHHHHHHHC--CcEEEEecCCCCcccccCCCCHHHHHHHHHHHhhcchHHH
Q 001373 788 SVTEDILTGFKMHCH--GWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEIL 842 (1091)
Q Consensus 788 svTEDi~TglrLh~~--GWrsvY~~p~~~AF~G~aP~tl~~~l~QR~RWA~G~lQil 842 (1091)
.+.||=.++..|.++ |||..|+..+. | +..+|++++.+++||+||..|++--+
T Consensus 324 ~lGEDR~LttLlLk~~~~~k~~y~~~A~-a-~T~aP~t~~vflsQRRRWinSTi~Nl 378 (527)
T PF03142_consen 324 DLGEDRWLTTLLLKQFPGYKTEYVPSAV-A-YTDAPETFSVFLSQRRRWINSTIHNL 378 (527)
T ss_pred hcchhHHHHHHHHhhCCCceEEEccccc-c-cccCCccHHHHHHHhhhccchhHhhH
Confidence 567998777666666 89999995544 4 89999999999999999999998544
No 51
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=98.95 E-value=2.4e-08 Score=107.37 Aligned_cols=60 Identities=12% Similarity=0.058 Sum_probs=46.0
Q ss_pred EEEEeccCCCCCCCCCcchhhHHHHHhhccccCCCEEEEecCCCCCCcHHHHHHHHHhhcCCCCCcceEEEecc
Q 001373 535 LVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFP 608 (1091)
Q Consensus 535 lvYvsRekRpg~~hh~KAGalNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~va~VQ~P 608 (1091)
+.++.+++. ..|++|+|++++. +.|+||+.+|+|.. .+|++|.+++-.+.++ +..+|...
T Consensus 70 v~~~~~~~n-----~G~~~a~n~g~~~----a~g~~i~~lD~D~~-~~~~~l~~l~~~~~~~----~~~~v~g~ 129 (243)
T PLN02726 70 ILLRPRPGK-----LGLGTAYIHGLKH----ASGDFVVIMDADLS-HHPKYLPSFIKKQRET----GADIVTGT 129 (243)
T ss_pred EEEEecCCC-----CCHHHHHHHHHHH----cCCCEEEEEcCCCC-CCHHHHHHHHHHHHhc----CCcEEEEc
Confidence 555655442 2489999999985 68999999999997 7999999999888665 44555543
No 52
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=98.93 E-value=2e-08 Score=105.59 Aligned_cols=41 Identities=15% Similarity=0.182 Sum_probs=35.1
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCchhhh
Q 001373 370 IFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLT 415 (1091)
Q Consensus 370 vfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~lt 415 (1091)
|+||++| + ...+..|+-|+++.+|| +.+.++|.|||...-|
T Consensus 1 ViIp~yn---~-~~~l~~~l~sl~~q~~~-~~~eiiVvDd~S~d~t 41 (219)
T cd06913 1 IILPVHN---G-EQWLDECLESVLQQDFE-GTLELSVFNDASTDKS 41 (219)
T ss_pred CEEeecC---c-HHHHHHHHHHHHhCCCC-CCEEEEEEeCCCCccH
Confidence 6799998 4 37999999999999998 4689999999987744
No 53
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=98.92 E-value=1.8e-08 Score=97.84 Aligned_cols=63 Identities=30% Similarity=0.396 Sum_probs=47.6
Q ss_pred EEEEeccCCCCCCCCCcchhhHHHHHhhccccCCCEEEEecCCCCCCcHHHHHHHH-HhhcCCCCCcceEEEecceee
Q 001373 535 LVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAM-CFMMDPTSGKKICYVQFPQRF 611 (1091)
Q Consensus 535 lvYvsRekRpg~~hh~KAGalNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~am-cff~Dp~~g~~va~VQ~PQ~F 611 (1091)
++|+.+++. ..|+.|+|.+++. .+++||+.+|+|.+ ..|++|.+.+ .++.++ +++.|...+..
T Consensus 55 ~~~~~~~~~-----~g~~~~~n~~~~~----~~~~~i~~~D~D~~-~~~~~l~~~~~~~~~~~----~~~~v~~~~~~ 118 (180)
T cd06423 55 VLVVRDKEN-----GGKAGALNAGLRH----AKGDIVVVLDADTI-LEPDALKRLVVPFFADP----KVGAVQGRVRV 118 (180)
T ss_pred EEEEEeccc-----CCchHHHHHHHHh----cCCCEEEEECCCCC-cChHHHHHHHHHhccCC----CeeeEeeeEEE
Confidence 455555543 3599999999996 49999999999998 5899999994 455666 66676655443
No 54
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.92 E-value=3.1e-08 Score=102.26 Aligned_cols=66 Identities=17% Similarity=0.240 Sum_probs=47.5
Q ss_pred EEEEeccCCCCCCCCCcchhhHHHHHhhccccCCCEEEEecCCCCCCcHHHHHHHHHhhcCCCCCcceEEEecceeec
Q 001373 535 LVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFD 612 (1091)
Q Consensus 535 lvYvsRekRpg~~hh~KAGalNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~va~VQ~PQ~F~ 612 (1091)
+.|+.-++. +..+.++|.+++..- ...++|++.+|+|.+ +.|++|++.+-.+.+| +++.| +|.++.
T Consensus 53 i~~~~~~~n-----~g~~~~~n~~~~~a~-~~~~d~v~~ld~D~~-~~~~~l~~l~~~~~~~----~~~~~-~~~~~~ 118 (202)
T cd04185 53 IVYLRLPEN-----LGGAGGFYEGVRRAY-ELGYDWIWLMDDDAI-PDPDALEKLLAYADKD----NPQFL-APLVLD 118 (202)
T ss_pred eEEEECccc-----cchhhHHHHHHHHHh-ccCCCEEEEeCCCCC-cChHHHHHHHHHHhcC----CceEe-cceeEc
Confidence 455555542 347888898887532 457999999999997 6899999999988777 56655 344433
No 55
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=98.90 E-value=1.3e-08 Score=107.27 Aligned_cols=67 Identities=19% Similarity=0.221 Sum_probs=46.2
Q ss_pred cEEEEeccCCCCCCCCCcchhhHHHHHhhccccCCCEEEEecCCCCCCcHHHHHHHH---Hhh-cCCCCCcceEEEecce
Q 001373 534 RLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAM---CFM-MDPTSGKKICYVQFPQ 609 (1091)
Q Consensus 534 ~lvYvsRekRpg~~hh~KAGalNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~am---cff-~Dp~~g~~va~VQ~PQ 609 (1091)
.+.++..++.. .+|+|+|.+++.+.- .+++||+.+|+|.+ .+|++|.+++ -.+ .++ .++.+ .|+
T Consensus 48 ~i~~i~~~~n~-----G~~~a~N~g~~~a~~-~~~d~v~~lD~D~~-~~~~~l~~l~~~~~~~~~~~----~~~~~-~~~ 115 (237)
T cd02526 48 KIELIHLGENL-----GIAKALNIGIKAALE-NGADYVLLFDQDSV-PPPDMVEKLLAYKILSDKNS----NIGAV-GPR 115 (237)
T ss_pred cEEEEECCCce-----ehHHhhhHHHHHHHh-CCCCEEEEECCCCC-cCHhHHHHHHHHHHhhccCC----CeEEE-eee
Confidence 36677766533 399999999985321 25699999999998 6899999985 333 344 55544 555
Q ss_pred eec
Q 001373 610 RFD 612 (1091)
Q Consensus 610 ~F~ 612 (1091)
...
T Consensus 116 ~~~ 118 (237)
T cd02526 116 IID 118 (237)
T ss_pred EEc
Confidence 443
No 56
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=98.85 E-value=3.8e-09 Score=102.84 Aligned_cols=110 Identities=16% Similarity=0.142 Sum_probs=74.7
Q ss_pred cEEEEeccCCCCCCCCCcchhhHHHHHhhccccCCCEEEEecCCCCCCcHHHHHHHHHhhcCCCCCcceEEEecceeecC
Q 001373 534 RLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDG 613 (1091)
Q Consensus 534 ~lvYvsRekRpg~~hh~KAGalNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~va~VQ~PQ~F~n 613 (1091)
++.|+.+++ +. .+++|+|.+++. ..++||+.+|+|.+ ..+++|.+.+.++.+.. ..+.+...+....+
T Consensus 54 ~i~~i~~~~----n~-g~~~~~n~~~~~----a~~~~i~~ld~D~~-~~~~~l~~l~~~~~~~~--~~~~~~~~~~~~~~ 121 (169)
T PF00535_consen 54 NIRYIRNPE----NL-GFSAARNRGIKH----AKGEYILFLDDDDI-ISPDWLEELVEALEKNP--PDVVIGSVIYIDDD 121 (169)
T ss_dssp TEEEEEHCC----CS-HHHHHHHHHHHH------SSEEEEEETTEE-E-TTHHHHHHHHHHHCT--TEEEEEEEEEEECT
T ss_pred ccccccccc----cc-cccccccccccc----cceeEEEEeCCCce-EcHHHHHHHHHHHHhCC--CcEEEEEEEEecCC
Confidence 588999986 33 799999999995 68899999999998 57789999999998741 24444444444333
Q ss_pred CCccccccc--hhhhhhhhhccccccCCCccccccccchhhhhh
Q 001373 614 IDRHDRYSN--RNVVFFDINMKGLDGIQGPIYVGTGCVFRRQAL 655 (1091)
Q Consensus 614 id~~Dry~n--~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~AL 655 (1091)
......... ....++............+.++|.++++||++|
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~ 165 (169)
T PF00535_consen 122 NRYPDRRLRFSFWNRFERKIFNNIRFWKISFFIGSCALFRRSVF 165 (169)
T ss_dssp TETEECCCTSEEEECCHCHHHHTTHSTTSSEESSSCEEEEEHHH
T ss_pred ccccccccchhhhhhhhhHHHHhhhcCCcccccccEEEEEHHHH
Confidence 322222111 123334444455566678899999999999998
No 57
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=98.84 E-value=5.4e-08 Score=101.54 Aligned_cols=60 Identities=10% Similarity=0.063 Sum_probs=46.6
Q ss_pred EEEEeccCCCCCCCCCcchhhHHHHHhhccccCCCEEEEecCCCCCCcHHHHHHHHHhhcCCCCCcceEEEecc
Q 001373 535 LVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFP 608 (1091)
Q Consensus 535 lvYvsRekRpg~~hh~KAGalNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~va~VQ~P 608 (1091)
+.++.++++ ..|++|+|.+++. +.++||+.+|+|.. ..|++|...+..+.++ +...|..+
T Consensus 55 i~~~~~~~n-----~G~~~a~n~g~~~----a~gd~i~~lD~D~~-~~~~~l~~l~~~~~~~----~~~~v~g~ 114 (224)
T cd06442 55 VRLIVRPGK-----RGLGSAYIEGFKA----ARGDVIVVMDADLS-HPPEYIPELLEAQLEG----GADLVIGS 114 (224)
T ss_pred eEEEecCCC-----CChHHHHHHHHHH----cCCCEEEEEECCCC-CCHHHHHHHHHHHhcC----CCCEEEEe
Confidence 455555543 3589999999985 57899999999997 6899999999987766 44556554
No 58
>PRK10073 putative glycosyl transferase; Provisional
Probab=98.59 E-value=9.1e-07 Score=100.62 Aligned_cols=110 Identities=15% Similarity=0.208 Sum_probs=83.0
Q ss_pred CCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCchhhhHHHHhhhHHHhhhhhhhhhhcCCCCCCc
Q 001373 364 DLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRAP 443 (1091)
Q Consensus 364 ~lP~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFCkk~~iepRaP 443 (1091)
..|.|.|+||+|| ++ ..+..++-|+++..|+ .+.|+|.|||+++-|.+-+
T Consensus 4 ~~p~vSVIIP~yN---~~-~~L~~~l~Sl~~Qt~~--~~EIIiVdDgStD~t~~i~------------------------ 53 (328)
T PRK10073 4 STPKLSIIIPLYN---AG-KDFRAFMESLIAQTWT--ALEIIIVNDGSTDNSVEIA------------------------ 53 (328)
T ss_pred CCCeEEEEEeccC---CH-HHHHHHHHHHHhCCCC--CeEEEEEeCCCCccHHHHH------------------------
Confidence 3588999999998 54 6889999999999997 5889999999886332211
Q ss_pred hhhhhhccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCCCCCCCCCchhhhhhhcCCC
Q 001373 444 EWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNG 523 (1091)
Q Consensus 444 e~YFs~~~d~~~~~~~~~f~~err~mkreYee~k~rI~~l~~~~~~~p~~~w~m~dg~~w~g~~~rdHp~iiqv~l~~~g 523 (1091)
++|.+
T Consensus 54 ---------------------------~~~~~------------------------------------------------ 58 (328)
T PRK10073 54 ---------------------------KHYAE------------------------------------------------ 58 (328)
T ss_pred ---------------------------HHHHh------------------------------------------------
Confidence 11110
Q ss_pred CccccCCccCcEEEEeccCCCCCCCCCcchhhHHHHHhhccccCCCEEEEecCCCCCCcHHHHHHHHHhhcCC
Q 001373 524 VRDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDP 596 (1091)
Q Consensus 524 ~~d~~~~~lP~lvYvsRekRpg~~hh~KAGalNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp 596 (1091)
+.|++.++..+ ....++|.|.+++. +.|+||+.+|+|-+ ..|+.|.+.+..+.++
T Consensus 59 -------~~~~i~vi~~~------n~G~~~arN~gl~~----a~g~yi~flD~DD~-~~p~~l~~l~~~~~~~ 113 (328)
T PRK10073 59 -------NYPHVRLLHQA------NAGVSVARNTGLAV----ATGKYVAFPDADDV-VYPTMYETLMTMALED 113 (328)
T ss_pred -------hCCCEEEEECC------CCChHHHHHHHHHh----CCCCEEEEECCCCc-cChhHHHHHHHHHHhC
Confidence 01245666432 23689999999985 79999999999998 5899999999877654
No 59
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=98.59 E-value=6.9e-07 Score=93.45 Aligned_cols=52 Identities=17% Similarity=0.105 Sum_probs=41.6
Q ss_pred CcchhhHHHHHhhccccCCCEEEEecCCCCCCcHHHHHHHHHhhcCCCCCcceEEEeccee
Q 001373 550 KKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQR 610 (1091)
Q Consensus 550 ~KAGalNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~va~VQ~PQ~ 610 (1091)
.|++|+|.+++. +.++||+.+|+|.. ..|+++.+.+..+.++ ....|..+..
T Consensus 69 G~~~a~~~g~~~----a~gd~i~~ld~D~~-~~~~~l~~l~~~~~~~----~~~~v~g~r~ 120 (211)
T cd04188 69 GKGGAVRAGMLA----ARGDYILFADADLA-TPFEELEKLEEALKTS----GYDIAIGSRA 120 (211)
T ss_pred CcHHHHHHHHHH----hcCCEEEEEeCCCC-CCHHHHHHHHHHHhcc----CCcEEEEEee
Confidence 489999999995 68899999999997 7899999999987654 3344555433
No 60
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=98.53 E-value=7.3e-07 Score=90.15 Aligned_cols=65 Identities=11% Similarity=0.117 Sum_probs=50.3
Q ss_pred EEEEeccCCCCCCCCCcchhhHHHHHhhccccCCCEEEEecCCCCCCcHHHHHHHHHhhcCCCCCcceEEEecceeecC
Q 001373 535 LVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDG 613 (1091)
Q Consensus 535 lvYvsRekRpg~~hh~KAGalNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~va~VQ~PQ~F~n 613 (1091)
+.++..+++. .|++|+|.+++. +.+++|+.+|+|-. ..|++|.+.+-.+..+ +..+|+.+..+.+
T Consensus 56 ~~~~~~~~n~-----G~~~a~n~g~~~----a~gd~i~~lD~D~~-~~~~~l~~l~~~~~~~----~~~~v~g~~~~~~ 120 (185)
T cd04179 56 VRVIRLSRNF-----GKGAAVRAGFKA----ARGDIVVTMDADLQ-HPPEDIPKLLEKLLEG----GADVVIGSRFVRG 120 (185)
T ss_pred eEEEEccCCC-----CccHHHHHHHHH----hcCCEEEEEeCCCC-CCHHHHHHHHHHHhcc----CCcEEEEEeecCC
Confidence 4556555544 399999999985 67899999999997 6899999999986654 4667777765554
No 61
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=98.52 E-value=2.4e-06 Score=93.88 Aligned_cols=69 Identities=19% Similarity=0.234 Sum_probs=49.7
Q ss_pred cEEEEeccCCCCCCCCCcchhhHHHHHhhccccCCCEEEEecCCCCCCcHHHHHHHHHhhcCCCCCcceEEEecceeec
Q 001373 534 RLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFD 612 (1091)
Q Consensus 534 ~lvYvsRekRpg~~hh~KAGalNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~va~VQ~PQ~F~ 612 (1091)
.+.|+.-++.- ..|||+|.+++.. .-.+++||+.+|.|.+ +.+++|.+.+.++..+ +.+++.|. |..++
T Consensus 46 ~i~~i~~~~N~-----G~a~a~N~Gi~~a-~~~~~d~i~~lD~D~~-~~~~~l~~l~~~~~~~--~~~~~~~~-~~~~~ 114 (281)
T TIGR01556 46 KIALIHLGDNQ-----GIAGAQNQGLDAS-FRRGVQGVLLLDQDSR-PGNAFLAAQWKLLSAE--NGQACALG-PRFFD 114 (281)
T ss_pred CeEEEECCCCc-----chHHHHHHHHHHH-HHCCCCEEEEECCCCC-CCHHHHHHHHHHHHhc--CCceEEEC-CeEEc
Confidence 46677655433 5899999998853 1237899999999998 6799999999887542 12677776 44433
No 62
>PRK10018 putative glycosyl transferase; Provisional
Probab=98.47 E-value=2.9e-06 Score=94.67 Aligned_cols=52 Identities=15% Similarity=0.264 Sum_probs=42.6
Q ss_pred cEEEEeccCCCCCCCCCcchhhHHHHHhhccccCCCEEEEecCCCCCCcHHHHHHHHHhhcC
Q 001373 534 RLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMD 595 (1091)
Q Consensus 534 ~lvYvsRekRpg~~hh~KAGalNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~D 595 (1091)
++.|+..++. ..++.|+|.++.. ++|+||+.+|+|-+ ..|+.|.+.+-++..
T Consensus 61 ri~~i~~~~n-----~G~~~a~N~gi~~----a~g~~I~~lDaDD~-~~p~~l~~~~~~~~~ 112 (279)
T PRK10018 61 RITYIHNDIN-----SGACAVRNQAIML----AQGEYITGIDDDDE-WTPNRLSVFLAHKQQ 112 (279)
T ss_pred CEEEEECCCC-----CCHHHHHHHHHHH----cCCCEEEEECCCCC-CCccHHHHHHHHHHh
Confidence 5788876653 3589999999985 79999999999998 579999988887653
No 63
>PRK10063 putative glycosyl transferase; Provisional
Probab=98.42 E-value=7.9e-06 Score=89.41 Aligned_cols=47 Identities=15% Similarity=0.005 Sum_probs=36.3
Q ss_pred CceeEEEecCCCCCCCHHHHHHHHHHHHcC-CCCCCCcEEEEcCCCchhhhH
Q 001373 366 ADIDIFVSTVDPMKEPPLITANTVLSILAV-DYPVDKVACYVSDDGAAMLTF 416 (1091)
Q Consensus 366 P~VDvfV~T~dP~kEPp~v~~nTvls~la~-DYP~~kl~~yvsDDG~s~ltf 416 (1091)
|.|.|+||||| |. ..+..|+.|++++ ..+...+.++|.|||.++-|.
T Consensus 1 ~~vSVIi~~yN---~~-~~l~~~l~sl~~~~~~~~~~~EiIVvDdgStD~t~ 48 (248)
T PRK10063 1 MLLSVITVAFR---NL-EGIVKTHASLRHLAQDPGISFEWIVVDGGSNDGTR 48 (248)
T ss_pred CeEEEEEEeCC---CH-HHHHHHHHHHHHHHhCCCCCEEEEEEECcCcccHH
Confidence 56899999998 64 5689999999864 233347899999999987443
No 64
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=98.32 E-value=1e-05 Score=76.64 Aligned_cols=52 Identities=25% Similarity=0.312 Sum_probs=41.8
Q ss_pred CCCcchhhHHHHHhhccccCCCEEEEecCCCCCCcHHHHHHHHH-hhcCCCCCcceEEEecc
Q 001373 548 HHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMC-FMMDPTSGKKICYVQFP 608 (1091)
Q Consensus 548 hh~KAGalNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amc-ff~Dp~~g~~va~VQ~P 608 (1091)
+..|++++|.++.. .++++++++|+|.+ ..|+++...+- +..++ +...|+.+
T Consensus 62 ~~g~~~~~~~~~~~----~~~d~v~~~d~D~~-~~~~~~~~~~~~~~~~~----~~~~v~~~ 114 (156)
T cd00761 62 NQGLAAARNAGLKA----ARGEYILFLDADDL-LLPDWLERLVAELLADP----EADAVGGP 114 (156)
T ss_pred CCChHHHHHHHHHH----hcCCEEEEECCCCc-cCccHHHHHHHHHhcCC----CceEEecc
Confidence 44799999999986 47999999999997 68899988744 45555 67778776
No 65
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=98.27 E-value=6.1e-06 Score=84.00 Aligned_cols=104 Identities=13% Similarity=0.224 Sum_probs=62.9
Q ss_pred cEEEEeccCCCCCCCCCcchhhHHHHHhhccccCCCEEEEecCCCCCCcHHHHHHHHHhhcCCCCCcceEEEecceeecC
Q 001373 534 RLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDG 613 (1091)
Q Consensus 534 ~lvYvsRekRpg~~hh~KAGalNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~va~VQ~PQ~F~n 613 (1091)
++.|+..++ ...|++|+|++++. +.++||+.+|+|.. ..+++|.+.+.. +++. .++.+..... .+
T Consensus 56 ~i~~i~~~~-----n~G~~~a~n~g~~~----a~~d~i~~~D~D~~-~~~~~l~~l~~~-~~~~--~~~v~g~~~~--~~ 120 (181)
T cd04187 56 RVKVIRLSR-----NFGQQAALLAGLDH----ARGDAVITMDADLQ-DPPELIPEMLAK-WEEG--YDVVYGVRKN--RK 120 (181)
T ss_pred CEEEEEecC-----CCCcHHHHHHHHHh----cCCCEEEEEeCCCC-CCHHHHHHHHHH-HhCC--CcEEEEEecC--Cc
Confidence 356665554 23599999999985 67899999999997 689999999987 4432 2444433221 11
Q ss_pred CCc-cccccchhhhhhhhhccccccCCCccccccccchhhhhhc
Q 001373 614 IDR-HDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALY 656 (1091)
Q Consensus 614 id~-~Dry~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALy 656 (1091)
+. ..++.+. .++. ....+.+..-+...|+..++||+++-
T Consensus 121 -~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~ 160 (181)
T cd04187 121 -ESWLKRLTSK--LFYR-LINKLSGVDIPDNGGDFRLMDRKVVD 160 (181)
T ss_pred -chHHHHHHHH--HHHH-HHHHHcCCCCCCCCCCEEEEcHHHHH
Confidence 11 1111111 1111 11222334445566778899999995
No 66
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=98.25 E-value=2.8e-05 Score=86.45 Aligned_cols=63 Identities=13% Similarity=0.204 Sum_probs=45.9
Q ss_pred CCcchhhHHHHHhhccccCCCEEEEecCCCCCCcHHHHHHHHHhhcCCCCCcceEEEecceeecCCCcc
Q 001373 549 HKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDGIDRH 617 (1091)
Q Consensus 549 h~KAGalNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~va~VQ~PQ~F~nid~~ 617 (1091)
-.+|.|.|.++.. +++++|+.+|+|.+ +.|+++.+++-+.+.=. ...-+++-.|..|.+.+..
T Consensus 74 f~~a~arN~g~~~----A~~d~l~flD~D~i-~~~~~i~~~~~~~~~l~-~~~~~~~~~p~~yl~~~~~ 136 (281)
T PF10111_consen 74 FSRAKARNIGAKY----ARGDYLIFLDADCI-PSPDFIEKLLNHVKKLD-KNPNAFLVYPCLYLSEEGS 136 (281)
T ss_pred cCHHHHHHHHHHH----cCCCEEEEEcCCee-eCHHHHHHHHHHHHHHh-cCCCceEEEeeeeccchhh
Confidence 4799999999985 69999999999997 68999999999321100 0134566667777655433
No 67
>KOG2571 consensus Chitin synthase/hyaluronan synthase (glycosyltransferases) [Cell wall/membrane/envelope biogenesis]
Probab=98.13 E-value=4.3e-05 Score=95.19 Aligned_cols=49 Identities=27% Similarity=0.326 Sum_probs=44.1
Q ss_pred cccchHHHHHHHHHCCcEEEEecCCCCcccccCCCCHHHHHHHHHHHhhcc
Q 001373 788 SVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGS 838 (1091)
Q Consensus 788 svTEDi~TglrLh~~GWrsvY~~p~~~AF~G~aP~tl~~~l~QR~RWA~G~ 838 (1091)
+..||=.+..++..+||+.-|+... .| ...+|+++.+++.||+||..|.
T Consensus 549 ~~geDR~L~~~llskgy~l~Y~a~s-~a-~t~~Pe~~~efl~QrrRW~~s~ 597 (862)
T KOG2571|consen 549 SLGEDRWLCTLLLSKGYRLKYVAAS-DA-ETEAPESFLEFLNQRRRWLNSI 597 (862)
T ss_pred ccchhHHHHHHHHhccceeeeeccc-cc-cccCcHhHHHHHHHhhhhcccc
Confidence 5889999999999999999999543 33 8999999999999999999993
No 68
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=98.11 E-value=5.6e-05 Score=86.46 Aligned_cols=42 Identities=24% Similarity=0.319 Sum_probs=35.8
Q ss_pred CCcchhhHHHHHhhccccCCCEEEEecCCCCCCcHHHHHHHHHhhcC
Q 001373 549 HKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMD 595 (1091)
Q Consensus 549 h~KAGalNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~D 595 (1091)
..|++|+|++++. +.|+||+++|+|.. .+++.+.+.+-.+.+
T Consensus 148 ~G~~~A~~~Gi~~----a~gd~I~~~DaD~~-~~~~~l~~l~~~l~~ 189 (333)
T PTZ00260 148 KGKGGAVRIGMLA----SRGKYILMVDADGA-TDIDDFDKLEDIMLK 189 (333)
T ss_pred CChHHHHHHHHHH----ccCCEEEEEeCCCC-CCHHHHHHHHHHHHH
Confidence 3699999999985 58999999999997 688998888877653
No 69
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=98.05 E-value=0.00012 Score=82.09 Aligned_cols=69 Identities=22% Similarity=0.245 Sum_probs=49.3
Q ss_pred CcEEEEeccCCCCCCCCCcchhhHHHHHhhccccCCC-EEEEecCCCCCCcHHHHHHHHHhhc-CCCCCcceEEEeccee
Q 001373 533 PRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAP-YLLNVDCDHYINNSKALREAMCFMM-DPTSGKKICYVQFPQR 610 (1091)
Q Consensus 533 P~lvYvsRekRpg~~hh~KAGalNallrvSav~tngp-~Il~lDcD~~~~~p~~Lr~amcff~-Dp~~g~~va~VQ~PQ~ 610 (1091)
|.+.|+.-.+.-| =||+.|.+++.. +.++. |++.|+-|.+ .++++|.+.+-.+. +| .++.|+.-.+
T Consensus 56 ~~v~~i~~~~NlG-----~agg~n~g~~~a--~~~~~~~~l~LN~D~~-~~~~~l~~ll~~~~~~~----~~~~~~~~i~ 123 (305)
T COG1216 56 PNVRLIENGENLG-----FAGGFNRGIKYA--LAKGDDYVLLLNPDTV-VEPDLLEELLKAAEEDP----AAGVVGPLIR 123 (305)
T ss_pred CcEEEEEcCCCcc-----chhhhhHHHHHH--hcCCCcEEEEEcCCee-eChhHHHHHHHHHHhCC----CCeEeeeeEe
Confidence 3466666555443 588888877753 34544 9999999975 79999999997664 55 7888887766
Q ss_pred ecC
Q 001373 611 FDG 613 (1091)
Q Consensus 611 F~n 613 (1091)
.++
T Consensus 124 ~~~ 126 (305)
T COG1216 124 NYD 126 (305)
T ss_pred cCC
Confidence 543
No 70
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=97.93 E-value=4.9e-05 Score=86.03 Aligned_cols=51 Identities=16% Similarity=0.161 Sum_probs=42.6
Q ss_pred CCcchhhHHHHHhhccccCCCEEEEecCCCCCCcHHHHHHHHHhhc-CCCCCcceEEEec
Q 001373 549 HKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMM-DPTSGKKICYVQF 607 (1091)
Q Consensus 549 h~KAGalNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~-Dp~~g~~va~VQ~ 607 (1091)
..|++|+|.+++. ++|++|+.+|+|....+|++|.+.+..+. || ++++|..
T Consensus 101 ~Gkg~A~~~g~~~----a~gd~vv~lDaD~~~~~p~~l~~l~~~l~~~~----~~~~V~g 152 (306)
T PRK13915 101 PGKGEALWRSLAA----TTGDIVVFVDADLINFDPMFVPGLLGPLLTDP----GVHLVKA 152 (306)
T ss_pred CCHHHHHHHHHHh----cCCCEEEEEeCccccCCHHHHHHHHHHHHhCC----CceEEEE
Confidence 4699999999885 68999999999985468999999998775 77 6777764
No 71
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=97.20 E-value=0.0025 Score=72.76 Aligned_cols=41 Identities=12% Similarity=0.096 Sum_probs=35.9
Q ss_pred CCcchhhHHHHHhhccccCCCEEEEecCCCCCCcHHHHHHHHHhhc
Q 001373 549 HKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMM 594 (1091)
Q Consensus 549 h~KAGalNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~ 594 (1091)
..|++|+|++++. +.|++++.+|||.. .+|+.+.+.+-.+.
T Consensus 76 ~G~~~A~~~G~~~----A~gd~vv~~DaD~q-~~p~~i~~l~~~~~ 116 (325)
T PRK10714 76 YGQHSAIMAGFSH----VTGDLIITLDADLQ-NPPEEIPRLVAKAD 116 (325)
T ss_pred CCHHHHHHHHHHh----CCCCEEEEECCCCC-CCHHHHHHHHHHHH
Confidence 3689999999985 68999999999997 78999999988764
No 72
>KOG2547 consensus Ceramide glucosyltransferase [Lipid transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=96.92 E-value=0.013 Score=67.33 Aligned_cols=159 Identities=26% Similarity=0.419 Sum_probs=108.5
Q ss_pred CCCcchhhHHHHHhhccccCCCEEEEecCCCCCCcHHHHHHHHHhhcCCCCCcceEEE-ecceeecCCCccccccchhhh
Q 001373 548 HHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYV-QFPQRFDGIDRHDRYSNRNVV 626 (1091)
Q Consensus 548 hh~KAGalNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~va~V-Q~PQ~F~nid~~Dry~n~~~v 626 (1091)
-+-|--||=-+.|. ...|+|++.|.|-. -.|+.+....-=||.++ ++|+| |+|-.++-.-
T Consensus 155 ~npKInN~mpgy~~----a~ydlvlisDsgI~-m~pdtildm~t~M~she---kmalvtq~py~~dr~G----------- 215 (431)
T KOG2547|consen 155 LNPKINNMMPGYRA----AKYDLVLISDSGIF-MKPDTILDMATTMMSHE---KMALVTQTPYCKDRQG----------- 215 (431)
T ss_pred cChhhhccCHHHHH----hcCCEEEEecCCee-ecCchHHHHHHhhhccc---ceeeecCCceeecccc-----------
Confidence 45577777667774 68899999999998 58999998888888775 89998 7786655211
Q ss_pred hhhhhccccccCCCccccccccchhhhhhcCCCCCCCCCCCCCcCCCCCCccccccccccccccccCCccCCcchhhhhh
Q 001373 627 FFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKPPRKTCNCLPKWCCCCCRSRKKSKKGKSNKKNKDTSKQIYA 706 (1091)
Q Consensus 627 Ffdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~ 706 (1091)
|+... .-+|-||.- -|--|-| ++-++ -|.+
T Consensus 216 -f~atl-------e~~~fgTsh--~r~yl~~--------------n~~~~---~c~t----------------------- 245 (431)
T KOG2547|consen 216 -FDATL-------EQVYFGTSH--PRIYLSG--------------NVLGF---NCST----------------------- 245 (431)
T ss_pred -chhhh-------hheeeccCC--ceEEEcc--------------ccccc---cccc-----------------------
Confidence 11111 014444432 2211211 11110 1111
Q ss_pred hhhhhhcccccccccccCCchhhHhhhcCCcHHHHHhhhhhhCCCCCCCChhhHHHhhhhhccccccccCccccccCccc
Q 001373 707 LENIEEGIEGIDNEKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGASTASLLNEAIHVISCGYEDKTDWGKEIGWIY 786 (1091)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~~~~~~~~~~l~ea~~v~sc~YE~~T~WG~evGW~y 786 (1091)
|-|...+++++.|.||+... |
T Consensus 246 ----------------------------gms~~mrK~~ld~~ggi~~f----------------------------~--- 266 (431)
T KOG2547|consen 246 ----------------------------GMSSMMRKEALDECGGISAF----------------------------G--- 266 (431)
T ss_pred ----------------------------cHHHHHHHHHHHHhccHHHH----------------------------H---
Confidence 56778889999999997542 2
Q ss_pred ccccchHHHHHHHHHCCcEEEEecCCCCcccccCCCCHHHHHHHHHHHhh
Q 001373 787 GSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWAL 836 (1091)
Q Consensus 787 gsvTEDi~TglrLh~~GWrsvY~~p~~~AF~G~aP~tl~~~l~QR~RWA~ 836 (1091)
+.+.||+..+=.+..+||++.+.+-... ...+-.++..+..|-.||..
T Consensus 267 ~yLaedyFaaksllSRG~ksaist~pal--QnSas~~mssf~~Ri~rwvk 314 (431)
T KOG2547|consen 267 GYLAEDYFAAKSLLSRGWKSAISTHPAL--QNSASVTMSSFLDRIIRWVK 314 (431)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhcccchh--hhhhhhHHHHHHHHHHHhhh
Confidence 3899999999999999999999864332 46677889999999999975
No 73
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.86 E-value=0.0005 Score=77.02 Aligned_cols=48 Identities=33% Similarity=1.018 Sum_probs=44.2
Q ss_pred cccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhc
Q 001373 38 ICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRY 88 (1091)
Q Consensus 38 ~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Y 88 (1091)
.|..|=+.+.++ ..-|.+| -|||.|||.||.--|.+=|+.||-|...|
T Consensus 16 ~cplcie~mdit--dknf~pc-~cgy~ic~fc~~~irq~lngrcpacrr~y 63 (480)
T COG5175 16 YCPLCIEPMDIT--DKNFFPC-PCGYQICQFCYNNIRQNLNGRCPACRRKY 63 (480)
T ss_pred cCcccccccccc--cCCcccC-CcccHHHHHHHHHHHhhccCCChHhhhhc
Confidence 699999998776 4469999 99999999999999999999999999999
No 74
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=96.72 E-value=0.01 Score=63.64 Aligned_cols=42 Identities=12% Similarity=0.221 Sum_probs=36.0
Q ss_pred CcchhhHHHHHhhccccCCCEEEEecCCCCCCcHHHHHHHHHhhcCC
Q 001373 550 KKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDP 596 (1091)
Q Consensus 550 ~KAGalNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp 596 (1091)
..+.+.|.++.. ..+++|+.+|+|.. ..|+.+.+...++.++
T Consensus 58 g~~~~~n~~~~~----a~~d~vl~lDaD~~-~~~~~~~~l~~~~~~~ 99 (229)
T cd02511 58 GFGAQRNFALEL----ATNDWVLSLDADER-LTPELADEILALLATD 99 (229)
T ss_pred ChHHHHHHHHHh----CCCCEEEEEeCCcC-cCHHHHHHHHHHHhCC
Confidence 478999999884 68899999999998 6899999999888654
No 75
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=96.68 E-value=0.012 Score=56.71 Aligned_cols=45 Identities=22% Similarity=0.310 Sum_probs=39.5
Q ss_pred CCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCchhhh
Q 001373 365 LADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLT 415 (1091)
Q Consensus 365 lP~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~lt 415 (1091)
.|.|.|+|||+| |+ .....+|.|++...|+. ..+.|.|||.+.-|
T Consensus 2 ~~~~siiip~~n---~~-~~l~~~l~s~~~q~~~~--~eiivvddgs~d~t 46 (291)
T COG0463 2 MPKVSVVIPTYN---EE-EYLPEALESLLNQTYKD--FEIIVVDDGSTDGT 46 (291)
T ss_pred CccEEEEEeccc---hh-hhHHHHHHHHHhhhhcc--eEEEEEeCCCCCCh
Confidence 578999999998 55 89999999999999996 55999999998743
No 76
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.52 E-value=0.014 Score=66.35 Aligned_cols=59 Identities=20% Similarity=0.445 Sum_probs=51.4
Q ss_pred CCccccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhcccccCCC
Q 001373 35 SGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSP 95 (1091)
Q Consensus 35 ~~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Ykr~kgsp 95 (1091)
..+.|.+|-.+..++.+=.+++. +||-..|+.|.+--.+.|.+.||+|++..++.+=.|
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~--~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~ 60 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVN--VCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRV 60 (309)
T ss_pred CCCCCCcCCCCCccCcccccccC--CCCCcccHHHHHHHhcCCCCCCCCCCCccchhhccc
Confidence 35799999999999988888888 999999999998887889999999999998764333
No 77
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=95.22 E-value=0.011 Score=50.97 Aligned_cols=45 Identities=36% Similarity=0.963 Sum_probs=37.0
Q ss_pred CccccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCC--Chhhc
Q 001373 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQ--CKTRY 88 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~Cpq--Ckt~Y 88 (1091)
+.+|.+||+.+- +|++.|.|.+|+=|.=|+||+++ +.|-- |++.+
T Consensus 5 ~~~C~~Cg~~~~---~~dDiVvCp~CgapyHR~C~~~~-----g~C~~~~c~~~~ 51 (54)
T PF14446_consen 5 GCKCPVCGKKFK---DGDDIVVCPECGAPYHRDCWEKA-----GGCINYSCGTGF 51 (54)
T ss_pred CccChhhCCccc---CCCCEEECCCCCCcccHHHHhhC-----CceEeccCCCCc
Confidence 568999999874 47889999999999999999875 45655 77665
No 78
>PF02364 Glucan_synthase: 1,3-beta-glucan synthase component ; InterPro: IPR003440 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase 48 family GT48 from CAZY, which consists of various 1,3-beta-glucan synthase components including Gls1, Gls2 and Gls3 from yeast. 1,3-beta-glucan synthase (2.4.1.34 from EC) also known as callose synthase catalyses the formation of a beta-1,3-glucan polymer that is a major component of the fungal cell wall []. The reaction catalysed is:- UDP-glucose + {1,3-beta-D-glucosyl}(N) = UDP + {1,3-beta-D-glucosyl}(N+1).; GO: 0003843 1,3-beta-D-glucan synthase activity, 0006075 1,3-beta-D-glucan biosynthetic process, 0000148 1,3-beta-D-glucan synthase complex, 0016020 membrane
Probab=95.20 E-value=0.23 Score=62.82 Aligned_cols=73 Identities=25% Similarity=0.309 Sum_probs=50.1
Q ss_pred cccchHHHHHHHHHCCcEEEEecCCCCcccccCC-CCHHHHHHHHHHHhhcchHHHhhhccccccccCCCCCccccchhh
Q 001373 788 SVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAP-INLSDRLHQVLRWALGSVEILLSRHCPIWYGYGCGLKPLERFSYI 866 (1091)
Q Consensus 788 svTEDi~TglrLh~~GWrsvY~~p~~~AF~G~aP-~tl~~~l~QR~RWA~G~lQil~sk~~Pl~~g~~~~L~~~QRL~Yl 866 (1091)
.++||+..|+....||-++.++. -..+ |..- -.+..-..=-..-+.|+-+..++|.--.+ ..+|.+.+-+++.
T Consensus 409 hLsEDIfaG~n~~lRGG~i~h~e-y~qc--GKGRD~Gf~~I~~F~~KI~~G~GEQ~LSRe~yrL---g~~ld~~R~LSfy 482 (817)
T PF02364_consen 409 HLSEDIFAGMNATLRGGRIKHCE-YIQC--GKGRDVGFNSILNFETKIASGMGEQMLSREYYRL---GTRLDFFRFLSFY 482 (817)
T ss_pred cccHHHHHHHHHHhcCCceeehh-hhhc--ccccccCchhhhhhHhHhcCCccchhhhHHHHHh---hccCCHHHHHHHH
Confidence 88999999999999999999994 3342 4433 23344444446778999988888742222 5677776666533
No 79
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=94.76 E-value=0.35 Score=56.05 Aligned_cols=41 Identities=22% Similarity=0.265 Sum_probs=34.5
Q ss_pred eEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCchh
Q 001373 369 DIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAM 413 (1091)
Q Consensus 369 DvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ 413 (1091)
-|+|.||| - |.-+..|+-|+++..+-.+...+||++||...
T Consensus 3 PVlv~ayN---R-p~~l~r~LesLl~~~p~~~~~~liIs~DG~~~ 43 (334)
T cd02514 3 PVLVIACN---R-PDYLRRMLDSLLSYRPSAEKFPIIVSQDGGYE 43 (334)
T ss_pred CEEEEecC---C-HHHHHHHHHHHHhccccCCCceEEEEeCCCch
Confidence 47888886 3 69999999999998755567889999999875
No 80
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=88.63 E-value=0.28 Score=49.53 Aligned_cols=52 Identities=33% Similarity=0.798 Sum_probs=39.2
Q ss_pred ccccccCccccccCCCCccccCCC-CCCCcchhhHHHHHh--hcCCCCCCChhhccccc
Q 001373 37 QICQICGDEIEITDNGEPFVACNE-CAFPVCRPCYEYERR--EGNQACPQCKTRYKRIK 92 (1091)
Q Consensus 37 ~~C~iCgd~vg~~~~Ge~fvaC~e-C~fpvCrpCyeyerk--eG~~~CpqCkt~Ykr~k 92 (1091)
--|.||.|. ..-|-|.-=|| |||.||--||--=.| .-.-.||-|||-||..+
T Consensus 81 YeCnIC~et----S~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 81 YECNICKET----SAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred eeccCcccc----cchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence 469999874 22345665556 499999999976666 45589999999998754
No 81
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=88.50 E-value=0.42 Score=37.36 Aligned_cols=44 Identities=34% Similarity=0.825 Sum_probs=32.9
Q ss_pred cccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhh
Q 001373 38 ICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTR 87 (1091)
Q Consensus 38 ~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~ 87 (1091)
.|.||.+.. .+.+ ....|+-..|..|.+.-.+.++..||.|++.
T Consensus 1 ~C~iC~~~~-----~~~~-~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEF-----REPV-VLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhh-----hCce-EecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 488998886 2222 2234899999999987666678899999875
No 82
>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]
Probab=86.99 E-value=3.3 Score=44.62 Aligned_cols=53 Identities=15% Similarity=0.259 Sum_probs=37.1
Q ss_pred cEEEEeccCCCCCCCCCcchhhHHHHHhhccccCCCEEEEecCCCCCCcHHHHHHHHHhhcCC
Q 001373 534 RLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDP 596 (1091)
Q Consensus 534 ~lvYvsRekRpg~~hh~KAGalNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp 596 (1091)
++.-..|.+.-|.. -|--+.+.+ ..|+|+++.|||-- -.|+++-+......+-
T Consensus 64 ~i~l~pR~~klGLg-----tAy~hgl~~----a~g~fiviMDaDls-HhPk~ipe~i~lq~~~ 116 (238)
T KOG2978|consen 64 NILLKPRTKKLGLG-----TAYIHGLKH----ATGDFIVIMDADLS-HHPKFIPEFIRLQKEG 116 (238)
T ss_pred cEEEEeccCcccch-----HHHHhhhhh----ccCCeEEEEeCccC-CCchhHHHHHHHhhcc
Confidence 57778888744422 122334443 68999999999985 8899999887766654
No 83
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=79.68 E-value=1.9 Score=37.19 Aligned_cols=43 Identities=14% Similarity=0.111 Sum_probs=33.7
Q ss_pred cccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhc
Q 001373 38 ICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRY 88 (1091)
Q Consensus 38 ~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Y 88 (1091)
+|.||++-+ .+ +.+ -.||+-.||.|.+--.++ ++.||.|+.++
T Consensus 3 ~Cpi~~~~~-~~----Pv~--~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~ 45 (63)
T smart00504 3 LCPISLEVM-KD----PVI--LPSGQTYERRAIEKWLLS-HGTDPVTGQPL 45 (63)
T ss_pred CCcCCCCcC-CC----CEE--CCCCCEEeHHHHHHHHHH-CCCCCCCcCCC
Confidence 699999863 22 333 378999999999877766 68899999877
No 84
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=76.38 E-value=1 Score=56.40 Aligned_cols=24 Identities=25% Similarity=0.595 Sum_probs=16.9
Q ss_pred chhhHHHHHhhcCCCCCCChhhccc
Q 001373 66 CRPCYEYERREGNQACPQCKTRYKR 90 (1091)
Q Consensus 66 CrpCyeyerkeG~~~CpqCkt~Ykr 90 (1091)
|.-|- .+..+|..-||+|+++-..
T Consensus 30 Cp~CG-~~~~~~~~fC~~CG~~~~~ 53 (645)
T PRK14559 30 CPQCG-TEVPVDEAHCPNCGAETGT 53 (645)
T ss_pred CCCCC-CCCCcccccccccCCcccc
Confidence 44444 4467888999999988643
No 85
>PHA02862 5L protein; Provisional
Probab=76.23 E-value=1.6 Score=44.96 Aligned_cols=50 Identities=30% Similarity=0.546 Sum_probs=32.5
Q ss_pred CccccccCccccccCCCCccccCCCC---CCCcchhhHHHH-HhhcCCCCCCChhhcccc
Q 001373 36 GQICQICGDEIEITDNGEPFVACNEC---AFPVCRPCYEYE-RREGNQACPQCKTRYKRI 91 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC---~fpvCrpCyeye-rkeG~~~CpqCkt~Ykr~ 91 (1091)
+.+|.||-++ ++|..-+| .| -==|=+.|.+-= ...++..|+|||++|.-.
T Consensus 2 ~diCWIC~~~-----~~e~~~PC-~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik 55 (156)
T PHA02862 2 SDICWICNDV-----CDERNNFC-GCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIK 55 (156)
T ss_pred CCEEEEecCc-----CCCCcccc-cccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEE
Confidence 4689999886 23446788 44 112334555322 347889999999999643
No 86
>PHA02929 N1R/p28-like protein; Provisional
Probab=73.04 E-value=3.8 Score=45.61 Aligned_cols=55 Identities=20% Similarity=0.556 Sum_probs=39.3
Q ss_pred cCCccccccCccccccC-CCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhcc
Q 001373 34 LSGQICQICGDEIEITD-NGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1091)
Q Consensus 34 ~~~~~C~iCgd~vg~~~-~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Yk 89 (1091)
.....|.||.+.+.-++ ....+..=..|+=.-|+.|.. +-.+.++.||-|.+++.
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~-~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECID-IWKKEKNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHH-HHHhcCCCCCCCCCEee
Confidence 34679999999876443 111233334788899999995 45567899999998874
No 87
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=72.84 E-value=2.9 Score=45.99 Aligned_cols=45 Identities=36% Similarity=0.828 Sum_probs=37.0
Q ss_pred CccccccCccccccCCCCccccCCCCCCCcchhhHHHH---HhhcCCCCCCChhhc
Q 001373 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYE---RREGNQACPQCKTRY 88 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeye---rkeG~~~CpqCkt~Y 88 (1091)
---|.||=|.. =|+.|-| ||---|.||. |- ....++.||=||..-
T Consensus 47 ~FdCNICLd~a-----kdPVvTl--CGHLFCWpCl-yqWl~~~~~~~~cPVCK~~V 94 (230)
T KOG0823|consen 47 FFDCNICLDLA-----KDPVVTL--CGHLFCWPCL-YQWLQTRPNSKECPVCKAEV 94 (230)
T ss_pred ceeeeeecccc-----CCCEEee--cccceehHHH-HHHHhhcCCCeeCCcccccc
Confidence 34899997764 4578888 9999999998 76 568899999999875
No 88
>KOG0916 consensus 1,3-beta-glucan synthase/callose synthase catalytic subunit [Cell wall/membrane/envelope biogenesis]
Probab=72.35 E-value=39 Score=45.70 Aligned_cols=82 Identities=23% Similarity=0.293 Sum_probs=47.2
Q ss_pred cccchHHHHHHHHHCCcEEEEecCCCCcccccCC-CCHHHHHHHHHHHhhcchHHHhhhccccccccCCCCCccccchhh
Q 001373 788 SVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAP-INLSDRLHQVLRWALGSVEILLSRHCPIWYGYGCGLKPLERFSYI 866 (1091)
Q Consensus 788 svTEDi~TglrLh~~GWrsvY~~p~~~AF~G~aP-~tl~~~l~QR~RWA~G~lQil~sk~~Pl~~g~~~~L~~~QRL~Yl 866 (1091)
.++||+..|+....||-++.++.- ..+ |..- -.+..-..=-..-+.|+-|..++|.- |..+.++.+..-|.+.
T Consensus 1173 nlsEDIfAG~n~tlRgG~itH~EY-iQv--GKGRDvGlnqI~~FeaKia~G~GEQ~LSRd~---YrLG~~ldffRmLSfy 1246 (1679)
T KOG0916|consen 1173 NLSEDIFAGFNATLRGGNITHHEY-IQV--GKGRDVGLNQISNFEAKIANGNGEQTLSRDY---YRLGTQLDFFRMLSFY 1246 (1679)
T ss_pred ccchHhhhhhhHHhhCCCccccee-eec--ccccccCcchhhhhhhhhcCCCcchhhhHHH---HHhcccccHHHHHHHH
Confidence 889999999999999999988842 221 2211 11111112223568888888887642 1124567666555533
Q ss_pred -hhhhHHhHH
Q 001373 867 -NSVVYPITS 875 (1091)
Q Consensus 867 -~~~ly~l~s 875 (1091)
.+.-+++.+
T Consensus 1247 ftt~GF~~n~ 1256 (1679)
T KOG0916|consen 1247 FTTVGFYFNN 1256 (1679)
T ss_pred hccccHHHHh
Confidence 333344444
No 89
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=71.73 E-value=3.4 Score=44.55 Aligned_cols=54 Identities=28% Similarity=0.602 Sum_probs=36.5
Q ss_pred cccccCCccccccCccccccCCCCccccCCCCCCCcchhhHHHHHh---------------hcCCCCCCChhhccc
Q 001373 30 SVKELSGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERR---------------EGNQACPQCKTRYKR 90 (1091)
Q Consensus 30 ~~~~~~~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerk---------------eG~~~CpqCkt~Ykr 90 (1091)
-+.....-.|.||-|.+- ++.+ -.|+--.|++|-+.-.. .+...||-|++....
T Consensus 12 ~~~~~~~~~CpICld~~~-----dPVv--T~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~ 80 (193)
T PLN03208 12 LVDSGGDFDCNICLDQVR-----DPVV--TLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE 80 (193)
T ss_pred eccCCCccCCccCCCcCC-----CcEE--cCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence 344445569999999752 2333 26899999999963211 134689999998843
No 90
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=71.58 E-value=2.5 Score=34.28 Aligned_cols=43 Identities=35% Similarity=0.732 Sum_probs=33.2
Q ss_pred cccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCCh
Q 001373 38 ICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCK 85 (1091)
Q Consensus 38 ~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCk 85 (1091)
.|.||-+++.. ++..+... |+=-.|+.|.+-=.+. ++.||-|+
T Consensus 2 ~C~IC~~~~~~---~~~~~~l~-C~H~fh~~Ci~~~~~~-~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFED---GEKVVKLP-CGHVFHRSCIKEWLKR-NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHT---TSCEEEET-TSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred CCcCCChhhcC---CCeEEEcc-CCCeeCHHHHHHHHHh-CCcCCccC
Confidence 59999999755 67777775 9999999998654444 67999996
No 91
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=71.25 E-value=2.3 Score=35.40 Aligned_cols=27 Identities=41% Similarity=0.920 Sum_probs=21.5
Q ss_pred ccccccCccccccCCCCccccCCCCCCCc
Q 001373 37 QICQICGDEIEITDNGEPFVACNECAFPV 65 (1091)
Q Consensus 37 ~~C~iCgd~vg~~~~Ge~fvaC~eC~fpv 65 (1091)
-+|.-||.++.++.. .-+-|.+|++.|
T Consensus 3 Y~C~~Cg~~~~~~~~--~~irC~~CG~rI 29 (44)
T smart00659 3 YICGECGRENEIKSK--DVVRCRECGYRI 29 (44)
T ss_pred EECCCCCCEeecCCC--CceECCCCCceE
Confidence 379999999888743 348899999876
No 92
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=70.92 E-value=2.9 Score=32.69 Aligned_cols=26 Identities=35% Similarity=0.925 Sum_probs=19.0
Q ss_pred cccccCccccccCCCCccccCCCCCCCc
Q 001373 38 ICQICGDEIEITDNGEPFVACNECAFPV 65 (1091)
Q Consensus 38 ~C~iCgd~vg~~~~Ge~fvaC~eC~fpv 65 (1091)
+|.-||.++.+... + -+.|.+||+.|
T Consensus 2 ~C~~Cg~~~~~~~~-~-~irC~~CG~RI 27 (32)
T PF03604_consen 2 ICGECGAEVELKPG-D-PIRCPECGHRI 27 (32)
T ss_dssp BESSSSSSE-BSTS-S-TSSBSSSS-SE
T ss_pred CCCcCCCeeEcCCC-C-cEECCcCCCeE
Confidence 68999999996643 3 37999999875
No 93
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=69.66 E-value=1.9 Score=37.63 Aligned_cols=46 Identities=30% Similarity=0.679 Sum_probs=34.1
Q ss_pred CccccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhcccc
Q 001373 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRI 91 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Ykr~ 91 (1091)
.|.|-.|+..-.. ..+.+ ||=-||+-|+.-||-.| ||=|++|+...
T Consensus 7 ~~~~~~~~~~~~~----~~~~p---CgH~I~~~~f~~~rYng---CPfC~~~~~~~ 52 (55)
T PF14447_consen 7 EQPCVFCGFVGTK----GTVLP---CGHLICDNCFPGERYNG---CPFCGTPFEFD 52 (55)
T ss_pred ceeEEEccccccc----ccccc---ccceeeccccChhhccC---CCCCCCcccCC
Confidence 4567777765222 13444 59999999999999888 99999999654
No 94
>KOG2977 consensus Glycosyltransferase [General function prediction only]
Probab=69.20 E-value=25 Score=40.26 Aligned_cols=60 Identities=20% Similarity=0.201 Sum_probs=37.1
Q ss_pred ceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCC---CCcEEEEcCCCchhhhHHHHhhhHHHhhhhhhhhhhcC
Q 001373 367 DIDIFVSTVDPMKEPPLITANTVLSILAVDYPV---DKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFK 437 (1091)
Q Consensus 367 ~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~---~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFCkk~~ 437 (1091)
...|+||.||=.+-=+.+.-.|+-+ |.-.|-. =...+.|+|||...-|.+.- +-||+|++
T Consensus 68 ~lsVIVpaynE~~ri~~mldeav~~-le~ry~~~~~F~~eiiVvddgs~d~T~~~a----------~k~s~K~~ 130 (323)
T KOG2977|consen 68 YLSVIVPAYNEEGRIGAMLDEAVDY-LEKRYLSDKSFTYEIIVVDDGSTDSTVEVA----------LKFSRKLG 130 (323)
T ss_pred eeEEEEecCCcccchHHHHHHHHHH-HHHHhccCCCCceeEEEeCCCCchhHHHHH----------HHHHHHcC
Confidence 6889999999222224444444443 3333433 36779999999998665532 24677766
No 95
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=69.17 E-value=3.8 Score=42.85 Aligned_cols=51 Identities=27% Similarity=0.499 Sum_probs=35.1
Q ss_pred CCccccccCccccccCCCCccccCCCCCC---CcchhhHHHHH-hhcCCCCCCChhhcccc
Q 001373 35 SGQICQICGDEIEITDNGEPFVACNECAF---PVCRPCYEYER-REGNQACPQCKTRYKRI 91 (1091)
Q Consensus 35 ~~~~C~iCgd~vg~~~~Ge~fvaC~eC~f---pvCrpCyeyer-keG~~~CpqCkt~Ykr~ 91 (1091)
.+..|.||-++- ++..-+| .|.= -|=+.|-+-=. ..|+..|++|+++|+-.
T Consensus 7 ~~~~CRIC~~~~-----~~~~~PC-~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~ 61 (162)
T PHA02825 7 MDKCCWICKDEY-----DVVTNYC-NCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIK 61 (162)
T ss_pred CCCeeEecCCCC-----CCccCCc-ccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEE
Confidence 466999997662 2345688 5633 33567876543 35789999999999655
No 96
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=65.52 E-value=3.1 Score=47.42 Aligned_cols=45 Identities=33% Similarity=0.896 Sum_probs=37.6
Q ss_pred cCCCCccccCCCCCCCc--------ch--hhHHHHHhhcCCCCCCChhhcccccC
Q 001373 49 TDNGEPFVACNECAFPV--------CR--PCYEYERREGNQACPQCKTRYKRIKG 93 (1091)
Q Consensus 49 ~~~Ge~fvaC~eC~fpv--------Cr--pCyeyerkeG~~~CpqCkt~Ykr~kg 93 (1091)
..+|+..--|.-|+||| |+ .|||-+|.|-.+.||.|-.|-.|..-
T Consensus 84 k~l~p~VHfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~~dK~Cp~C~d~VqrIeq 138 (389)
T KOG2932|consen 84 KQLGPRVHFCDRCDFPIAIYGRMIPCKHVFCLECARSDSDKICPLCDDRVQRIEQ 138 (389)
T ss_pred cccCcceEeecccCCcceeeecccccchhhhhhhhhcCccccCcCcccHHHHHHH
Confidence 44666677799999998 54 69999999999999999999988743
No 97
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=64.74 E-value=5.9 Score=29.59 Aligned_cols=39 Identities=38% Similarity=0.935 Sum_probs=27.3
Q ss_pred ccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCC
Q 001373 39 CQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQC 84 (1091)
Q Consensus 39 C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqC 84 (1091)
|.||.+. .... +. -.|+.-.|..|.+.-.+.++..||.|
T Consensus 1 C~iC~~~-----~~~~-~~-~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEE-----LKDP-VV-LPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccC-----CCCc-EE-ecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 6788777 1122 11 25788899999976666677889987
No 98
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=64.08 E-value=4.9 Score=46.37 Aligned_cols=52 Identities=29% Similarity=0.805 Sum_probs=43.3
Q ss_pred CccccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhcccc
Q 001373 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRI 91 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Ykr~ 91 (1091)
...|.+|++.. +.+--.|++| -|+|-+|-+|- --.-+++..||.|.++|++.
T Consensus 249 ~~s~p~~~~~~--~~~d~~~lP~-~~~~~~~l~~~-~t~~~~~~~~~~~rk~~~~~ 300 (327)
T KOG2068|consen 249 PPSCPICYEDL--DLTDSNFLPC-PCGFRLCLFCH-KTISDGDGRCPGCRKPYERN 300 (327)
T ss_pred CCCCCCCCCcc--cccccccccc-cccccchhhhh-hcccccCCCCCccCCccccC
Confidence 36899999985 4445679999 99999999998 34568999999999999764
No 99
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=62.52 E-value=5.4 Score=45.29 Aligned_cols=53 Identities=23% Similarity=0.564 Sum_probs=43.8
Q ss_pred ccccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhcccc
Q 001373 37 QICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRI 91 (1091)
Q Consensus 37 ~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Ykr~ 91 (1091)
+.|.+|--++-++.+ ++.-=|+|+.+.|-.|..-=-.-|...||.|.+.-+..
T Consensus 1 ~~Cp~CKt~~Y~np~--lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~ 53 (300)
T KOG3800|consen 1 QACPKCKTDRYLNPD--LKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKN 53 (300)
T ss_pred CCCcccccceecCcc--ceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhc
Confidence 358888888877755 55556699999999999777778999999999988664
No 100
>KOG3737 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=60.28 E-value=30 Score=41.04 Aligned_cols=47 Identities=17% Similarity=0.068 Sum_probs=36.7
Q ss_pred CCCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCC
Q 001373 361 KPSDLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDG 410 (1091)
Q Consensus 361 ~~~~lP~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG 410 (1091)
-|.+||++.|+|.-.| |--...+.||.|++.-.=|.=--.|.+.||=
T Consensus 150 Ype~Lpt~SVviVFHN---EGws~LmRTVHSVi~RsP~~~l~eivlvDDf 196 (603)
T KOG3737|consen 150 YPENLPTSSVVIVFHN---EGWSTLMRTVHSVIKRSPRKYLAEIVLVDDF 196 (603)
T ss_pred CcccCCcceEEEEEec---CccHHHHHHHHHHHhcCcHHhhheEEEeccC
Confidence 4678999999999998 9999999999999876544323346666763
No 101
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=59.78 E-value=6.8 Score=44.84 Aligned_cols=63 Identities=30% Similarity=0.752 Sum_probs=45.2
Q ss_pred ccccCCccccc--cCccccccCCCCccccCCC-CCCCcchhhHH-----------------------HH-----------
Q 001373 31 VKELSGQICQI--CGDEIEITDNGEPFVACNE-CAFPVCRPCYE-----------------------YE----------- 73 (1091)
Q Consensus 31 ~~~~~~~~C~i--Cgd~vg~~~~Ge~fvaC~e-C~fpvCrpCye-----------------------ye----------- 73 (1091)
+.+..|-.|.- ||...-...| +--|.|.. |+|-.||.|.| +|
T Consensus 310 vlq~gGVlCP~pgCG~gll~EPD-~rkvtC~~gCgf~FCR~C~e~yh~geC~~~~~as~t~tc~y~vde~~a~~arwd~a 388 (446)
T KOG0006|consen 310 VLQMGGVLCPRPGCGAGLLPEPD-QRKVTCEGGCGFAFCRECKEAYHEGECSAVFEASGTTTCAYRVDERAAEQARWDAA 388 (446)
T ss_pred eeecCCEecCCCCCCcccccCCC-CCcccCCCCchhHhHHHHHhhhccccceeeeccccccceeeecChhhhhhhhhhhh
Confidence 45567888986 9987655542 23588877 99999999998 33
Q ss_pred ----HhhcCCCCCCChhhcccccCC
Q 001373 74 ----RREGNQACPQCKTRYKRIKGS 94 (1091)
Q Consensus 74 ----rkeG~~~CpqCkt~Ykr~kgs 94 (1091)
.|-.++-||.|.++-.|.-|+
T Consensus 389 s~~TIk~tTkpCPkChvptErnGGC 413 (446)
T KOG0006|consen 389 SKETIKKTTKPCPKCHVPTERNGGC 413 (446)
T ss_pred hhhhhhhccCCCCCccCccccCCce
Confidence 233567788888888776655
No 102
>PF03966 Trm112p: Trm112p-like protein; InterPro: IPR005651 This family of short proteins have no known function. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The function of this family is uncertain. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The entry contains 2 families: Trm112, which is required for tRNA methylation in Saccharomyces cerevisiae (Baker's yeast) and is found in complexes with 2 tRNA methylases (TRM9 and TRM11) also with putative methyltransferase YDR140W []. The zinc-finger protein Ynr046w is plurifunctional and a component of the eRF1 methyltransferase in yeast []. The crystal structure of Ynr046w has been determined to 1.7 A resolution. It comprises a zinc-binding domain built from both the N- and C-terminal sequences and an inserted domain, absent from bacterial and archaeal orthologs of the protein, composed of three alpha-helices []. UPF0434, which are proteins that are functionally uncharacterised. ; PDB: 3Q87_A 2KPI_A 2K5R_A 2HF1_A 2JS4_A 2J6A_A 2JR6_A 2PK7_A 2JNY_A.
Probab=59.30 E-value=1.2 Score=39.83 Aligned_cols=26 Identities=31% Similarity=0.539 Sum_probs=21.4
Q ss_pred hhhHHHHHhhcCCCCCCChhhccccc
Q 001373 67 RPCYEYERREGNQACPQCKTRYKRIK 92 (1091)
Q Consensus 67 rpCyeyerkeG~~~CpqCkt~Ykr~k 92 (1091)
+-|+|++..||.=.||+|+..|--.+
T Consensus 42 ~~l~~~~i~eg~L~Cp~c~r~YPI~d 67 (68)
T PF03966_consen 42 HVLLEVEIVEGELICPECGREYPIRD 67 (68)
T ss_dssp EHHCTEETTTTEEEETTTTEEEEEET
T ss_pred hhhhcccccCCEEEcCCCCCEEeCCC
Confidence 45777888999999999999996543
No 103
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=59.22 E-value=32 Score=37.59 Aligned_cols=49 Identities=27% Similarity=0.390 Sum_probs=38.6
Q ss_pred CCcchhhHHHHHhhccccCCCEEEEecCCCCCCcHHHHHHHHHhh-cCCCCCcceEEE
Q 001373 549 HKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFM-MDPTSGKKICYV 605 (1091)
Q Consensus 549 h~KAGalNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff-~Dp~~g~~va~V 605 (1091)
.--|-+.|++++. +.++|++.+.=|-.+.+++++.+.+-.| .|| ++|.|
T Consensus 40 ~s~~~~yN~a~~~----a~~~ylvflHqDv~i~~~~~l~~il~~~~~~~----~~G~i 89 (217)
T PF13712_consen 40 KSMAAAYNEAMEK----AKAKYLVFLHQDVFIINENWLEDILEIFEEDP----NIGMI 89 (217)
T ss_dssp S-TTTHHHHHGGG------SSEEEEEETTEE-SSHHHHHHHHHHHHH-T----TEEEE
T ss_pred cCHHHHHHHHHHh----CCCCEEEEEeCCeEEcchhHHHHHHHHHhhCC----CccEE
Confidence 4578889999985 7999999999999999999999999988 898 66554
No 104
>PRK00420 hypothetical protein; Validated
Probab=56.97 E-value=4.2 Score=40.41 Aligned_cols=29 Identities=28% Similarity=0.675 Sum_probs=22.7
Q ss_pred ccCCCCCCCcchhhHHHHHhhcCCCCCCChhhccc
Q 001373 56 VACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (1091)
Q Consensus 56 vaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Ykr 90 (1091)
-.|.+|++|.= +-++|.-.||.|++.+.-
T Consensus 24 ~~CP~Cg~pLf------~lk~g~~~Cp~Cg~~~~v 52 (112)
T PRK00420 24 KHCPVCGLPLF------ELKDGEVVCPVHGKVYIV 52 (112)
T ss_pred CCCCCCCCcce------ecCCCceECCCCCCeeee
Confidence 46888888863 338899999999998854
No 105
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=55.22 E-value=8.2 Score=30.57 Aligned_cols=40 Identities=30% Similarity=0.693 Sum_probs=30.0
Q ss_pred ccccCccccccCCCCccccCCCCCCCcchhhHHHHHh-hcCCCCCCC
Q 001373 39 CQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERR-EGNQACPQC 84 (1091)
Q Consensus 39 C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerk-eG~~~CpqC 84 (1091)
|.||.+...... -=.+|+=..|+.|.+--.+ .++..||.|
T Consensus 1 C~iC~~~~~~~~------~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPV------ILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEE------EETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCC------EEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 778887644332 2346799999999987766 788899988
No 106
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=53.33 E-value=10 Score=30.15 Aligned_cols=39 Identities=38% Similarity=0.920 Sum_probs=27.4
Q ss_pred ccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCC
Q 001373 39 CQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQC 84 (1091)
Q Consensus 39 C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqC 84 (1091)
|.||-|...- +++.- .||--.|+.|.+--.+. +..||.|
T Consensus 1 C~iC~~~~~~-----~~~~~-~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD-----PVVVT-PCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS-----EEEEC-TTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccC-----cCEEC-CCCCchhHHHHHHHHHC-cCCCcCC
Confidence 7788665322 43433 78999999999776666 7999988
No 107
>PRK15103 paraquat-inducible membrane protein A; Provisional
Probab=53.22 E-value=10 Score=45.61 Aligned_cols=31 Identities=19% Similarity=0.533 Sum_probs=22.8
Q ss_pred CccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhccccc
Q 001373 53 EPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIK 92 (1091)
Q Consensus 53 e~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Ykr~k 92 (1091)
+.-++|++|+.-+ ..+...||+|+++-.|++
T Consensus 219 ~~l~~C~~Cd~l~---------~~~~a~CpRC~~~L~~~~ 249 (419)
T PRK15103 219 QGLRSCSCCTAIL---------PADQPVCPRCHTKGYVRR 249 (419)
T ss_pred cCCCcCCCCCCCC---------CCCCCCCCCCCCcCcCCC
Confidence 3467899999864 234458999999886653
No 108
>PF14471 DUF4428: Domain of unknown function (DUF4428)
Probab=53.21 E-value=7.3 Score=33.47 Aligned_cols=28 Identities=25% Similarity=0.772 Sum_probs=17.9
Q ss_pred cccccCccccccCCCCccccCCCCCCCcchhhHH
Q 001373 38 ICQICGDEIEITDNGEPFVACNECAFPVCRPCYE 71 (1091)
Q Consensus 38 ~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCye 71 (1091)
.|.|||+++|+... .-+. =+| ||..|++
T Consensus 1 ~C~iCg~kigl~~~--~k~~---DG~-iC~~C~~ 28 (51)
T PF14471_consen 1 KCAICGKKIGLFKR--FKIK---DGY-ICKDCLK 28 (51)
T ss_pred CCCccccccccccc--eecc---Ccc-chHHHHH
Confidence 59999999999642 1111 123 6778873
No 109
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=52.44 E-value=4.5 Score=46.20 Aligned_cols=36 Identities=33% Similarity=0.886 Sum_probs=26.9
Q ss_pred cccccCccccccCCCCccccCCCC-CCCcchhhHHHHHhhc
Q 001373 38 ICQICGDEIEITDNGEPFVACNEC-AFPVCRPCYEYERREG 77 (1091)
Q Consensus 38 ~C~iCgd~vg~~~~Ge~fvaC~eC-~fpvCrpCyeyerkeG 77 (1091)
-|.+|--++- .-.|+.|+|| +|-.|-||+---..-|
T Consensus 7 hCdvC~~d~T----~~~~i~C~eC~~~DLC~pCF~~g~~tg 43 (432)
T COG5114 7 HCDVCFLDMT----DLTFIKCNECPAVDLCLPCFVNGIETG 43 (432)
T ss_pred eehHHHHhhh----cceeeeeecccccceehhhhhcccccc
Confidence 5888876543 3479999999 9999999995333333
No 110
>PRK12495 hypothetical protein; Provisional
Probab=50.99 E-value=8.3 Score=42.36 Aligned_cols=30 Identities=30% Similarity=0.847 Sum_probs=22.4
Q ss_pred ccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhccc
Q 001373 54 PFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (1091)
Q Consensus 54 ~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Ykr 90 (1091)
.-.-|.+|+.||= +..|...||-|.+.+-+
T Consensus 41 sa~hC~~CG~PIp-------a~pG~~~Cp~CQ~~~~~ 70 (226)
T PRK12495 41 TNAHCDECGDPIF-------RHDGQEFCPTCQQPVTE 70 (226)
T ss_pred chhhcccccCccc-------CCCCeeECCCCCCcccc
Confidence 3445667777764 45899999999999964
No 111
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=50.18 E-value=1.6 Score=43.29 Aligned_cols=48 Identities=27% Similarity=0.699 Sum_probs=34.2
Q ss_pred cCCccccccCccccccC-CCCccccCCCCCCCcchhhHHHHHhhcCCCCCCC
Q 001373 34 LSGQICQICGDEIEITD-NGEPFVACNECAFPVCRPCYEYERREGNQACPQC 84 (1091)
Q Consensus 34 ~~~~~C~iCgd~vg~~~-~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqC 84 (1091)
.+...|.+|+...|+-. .| ..|..|...||+.|-.|-.+++-=.|-=|
T Consensus 52 ~~~~~C~~C~~~fg~l~~~~---~~C~~C~~~VC~~C~~~~~~~~~WlC~vC 100 (118)
T PF02318_consen 52 YGERHCARCGKPFGFLFNRG---RVCVDCKHRVCKKCGVYSKKEPIWLCKVC 100 (118)
T ss_dssp HCCSB-TTTS-BCSCTSTTC---EEETTTTEEEETTSEEETSSSCCEEEHHH
T ss_pred cCCcchhhhCCcccccCCCC---CcCCcCCccccCccCCcCCCCCCEEChhh
Confidence 35679999999988764 35 88999999999999977444444455544
No 112
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=49.72 E-value=69 Score=34.77 Aligned_cols=61 Identities=13% Similarity=0.256 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccch--hhHHHHHHHHHHHHHHHHHHHHhhc-CCCCcchh
Q 001373 993 PLTLLVFNLIGVIIGVADAISNGYETWG--PLFGKLFFSLWVILHLYPFLKGFLG-KQDRLPTI 1053 (1091)
Q Consensus 993 ~~~Llilnlvaiv~gi~r~i~~g~~~wg--~l~g~lf~~~Wvvv~l~Pfl~gL~g-R~~r~P~~ 1053 (1091)
=..|+++.+++++.|+.-+++...+..| .+....+..+++++.+|-|+--..| +..|.++.
T Consensus 99 DssLl~lg~~aLlsgitaff~~nA~~~GlItlll~a~vgGfamy~my~y~yr~~ad~sqr~~~~ 162 (226)
T COG4858 99 DSSLLFLGAMALLSGITAFFQKNAQVYGLITLLLTAVVGGFAMYIMYYYAYRMRADNSQRPGTW 162 (226)
T ss_pred cccHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHhhhHHHHHHHHHHHHhhcccccCCchH
Confidence 3457778888889898887765433333 2334456677888888888776666 33566764
No 113
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=49.62 E-value=10 Score=33.67 Aligned_cols=33 Identities=30% Similarity=0.738 Sum_probs=25.1
Q ss_pred CCccccccCccccccCCCCccccCCCCCCCcchh
Q 001373 35 SGQICQICGDEIEITDNGEPFVACNECAFPVCRP 68 (1091)
Q Consensus 35 ~~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrp 68 (1091)
.+|+|..||.....+.++..|+ |..|++-.=|+
T Consensus 27 TSq~C~~CG~~~~~~~~~r~~~-C~~Cg~~~~rD 59 (69)
T PF07282_consen 27 TSQTCPRCGHRNKKRRSGRVFT-CPNCGFEMDRD 59 (69)
T ss_pred CccCccCcccccccccccceEE-cCCCCCEECcH
Confidence 5889999999988755666554 87898876554
No 114
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=49.56 E-value=10 Score=31.71 Aligned_cols=46 Identities=22% Similarity=0.582 Sum_probs=32.4
Q ss_pred ccccccCccccccCCCCccccCCCCCCC-cchhhHHHHHhhcCCCCCCChhhccc
Q 001373 37 QICQICGDEIEITDNGEPFVACNECAFP-VCRPCYEYERREGNQACPQCKTRYKR 90 (1091)
Q Consensus 37 ~~C~iCgd~vg~~~~Ge~fvaC~eC~fp-vCrpCyeyerkeG~~~CpqCkt~Ykr 90 (1091)
..|.||.+..-. -.+.+ |+=- +|..|++--++ .+..||-|+++.++
T Consensus 3 ~~C~iC~~~~~~----~~~~p---CgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 3 EECPICFENPRD----VVLLP---CGHLCFCEECAERLLK-RKKKCPICRQPIES 49 (50)
T ss_dssp SB-TTTSSSBSS----EEEET---TCEEEEEHHHHHHHHH-TTSBBTTTTBB-SE
T ss_pred CCCccCCccCCc----eEEeC---CCChHHHHHHhHHhcc-cCCCCCcCChhhcC
Confidence 369999987321 23454 5777 99999966666 77999999998754
No 115
>PRK04023 DNA polymerase II large subunit; Validated
Probab=48.39 E-value=12 Score=48.93 Aligned_cols=45 Identities=24% Similarity=0.614 Sum_probs=32.9
Q ss_pred cCCccccccCccccccCCCCccccCCCCCC-----CcchhhHHHHHhhc-CCCCCCChhhcc
Q 001373 34 LSGQICQICGDEIEITDNGEPFVACNECAF-----PVCRPCYEYERREG-NQACPQCKTRYK 89 (1091)
Q Consensus 34 ~~~~~C~iCgd~vg~~~~Ge~fvaC~eC~f-----pvCrpCyeyerkeG-~~~CpqCkt~Yk 89 (1091)
.....|.-||... ....|.+||= ..|..| ++.+ .-.||.|++.=+
T Consensus 624 Vg~RfCpsCG~~t-------~~frCP~CG~~Te~i~fCP~C----G~~~~~y~CPKCG~El~ 674 (1121)
T PRK04023 624 IGRRKCPSCGKET-------FYRRCPFCGTHTEPVYRCPRC----GIEVEEDECEKCGREPT 674 (1121)
T ss_pred ccCccCCCCCCcC-------CcccCCCCCCCCCcceeCccc----cCcCCCCcCCCCCCCCC
Confidence 4556999999983 5578999984 368888 4433 367999998654
No 116
>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein. Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3].
Probab=48.19 E-value=12 Score=30.94 Aligned_cols=37 Identities=27% Similarity=0.836 Sum_probs=27.9
Q ss_pred CccccccCccccccCCCCccccCCCC-CCCcchhhHHHHHhhc
Q 001373 36 GQICQICGDEIEITDNGEPFVACNEC-AFPVCRPCYEYERREG 77 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC-~fpvCrpCyeyerkeG 77 (1091)
...|..|+..+ .|.-| .|.+| .|-+|..||..-+..+
T Consensus 4 ~~~C~~C~~~i----~g~ry-~C~~C~d~dlC~~Cf~~~~~~~ 41 (44)
T smart00291 4 SYSCDTCGKPI----VGVRY-HCLVCPDYDLCQSCFAKGSAGG 41 (44)
T ss_pred CcCCCCCCCCC----cCCEE-ECCCCCCccchHHHHhCcCcCC
Confidence 45799999843 36666 79999 9999999997544443
No 117
>TIGR00155 pqiA_fam integral membrane protein, PqiA family. This family consists of uncharacterized predicted integral membrane proteins found, so far, only in the Proteobacteria. Of two members in E. coli, one is induced by paraquat and is designated PqiA, paraquat-inducible protein A.
Probab=47.20 E-value=11 Score=44.92 Aligned_cols=30 Identities=20% Similarity=0.541 Sum_probs=20.2
Q ss_pred ccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhcccc
Q 001373 54 PFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRI 91 (1091)
Q Consensus 54 ~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Ykr~ 91 (1091)
.-++|++|+..+ . ......||+|++.--|.
T Consensus 214 ~~~~C~~Cd~~~-~-------~~~~a~CpRC~~~L~~~ 243 (403)
T TIGR00155 214 KLRSCSACHTTI-L-------PAQEPVCPRCSTPLYVR 243 (403)
T ss_pred CCCcCCCCCCcc-C-------CCCCcCCcCCCCcccCC
Confidence 357799998865 1 13345799999886444
No 118
>PHA02926 zinc finger-like protein; Provisional
Probab=47.10 E-value=21 Score=39.52 Aligned_cols=61 Identities=26% Similarity=0.563 Sum_probs=42.3
Q ss_pred cCCccccccCccccccC--CCCccccCCCCCCCcchhhHHHHHhh-----cCCCCCCChhhcccccCC
Q 001373 34 LSGQICQICGDEIEITD--NGEPFVACNECAFPVCRPCYEYERRE-----GNQACPQCKTRYKRIKGS 94 (1091)
Q Consensus 34 ~~~~~C~iCgd~vg~~~--~Ge~fvaC~eC~fpvCrpCyeyerke-----G~~~CpqCkt~Ykr~kgs 94 (1091)
.....|.||=+.|--.. +...|--=..|+-.-|..|..--|+. +...||.|.++++...=|
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~pS 235 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNITMS 235 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeeeccc
Confidence 44579999999875432 22223333457888999999776653 246799999999876544
No 119
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=46.35 E-value=7.1 Score=45.81 Aligned_cols=69 Identities=22% Similarity=0.502 Sum_probs=45.3
Q ss_pred CCccccccCccccccCCCCccccCCCCCCCcchh-hHHHHHhhcCCCCCCChhhc---cc--ccCCCCCCCCCCCCCc
Q 001373 35 SGQICQICGDEIEITDNGEPFVACNECAFPVCRP-CYEYERREGNQACPQCKTRY---KR--IKGSPRVDGDEEEDDT 106 (1091)
Q Consensus 35 ~~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrp-CyeyerkeG~~~CpqCkt~Y---kr--~kgsprv~gd~ee~~~ 106 (1091)
-+--|..||+.+|+...----.+|-. -.=-- =|||--+.|.+.||-|..-- || .-|||.|+.+-++-++
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsH---IfH~rCl~e~L~~n~~rsCP~CrklrSs~~rpgfvgs~~Vesest~~~v 438 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSH---IFHLRCLQEILENNGTRSCPNCRKLRSSMKRPGFVGSVPVESESTDRCV 438 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhH---HHHHHHHHHHHHhCCCCCCccHHHHHhhccCCCCcCCCccccccccccc
Confidence 35589999999999865444556621 11112 26777899999999998322 22 2378888877655444
No 120
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=45.72 E-value=12 Score=30.97 Aligned_cols=28 Identities=32% Similarity=0.816 Sum_probs=18.0
Q ss_pred ccccccCccccccCCCCccccCCCCCCCc
Q 001373 37 QICQICGDEIEITDNGEPFVACNECAFPV 65 (1091)
Q Consensus 37 ~~C~iCgd~vg~~~~Ge~fvaC~eC~fpv 65 (1091)
-.|+-||..+..+++.. -+-|..|+.++
T Consensus 4 y~C~~CG~~~~~~~~~~-~~~Cp~CG~~~ 31 (46)
T PRK00398 4 YKCARCGREVELDEYGT-GVRCPYCGYRI 31 (46)
T ss_pred EECCCCCCEEEECCCCC-ceECCCCCCeE
Confidence 36888888877766554 35666666554
No 122
>PF11077 DUF2616: Protein of unknown function (DUF2616); InterPro: IPR020201 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf52; it is a family of uncharacterised viral proteins.
Probab=45.57 E-value=7.2 Score=41.49 Aligned_cols=35 Identities=31% Similarity=0.931 Sum_probs=26.0
Q ss_pred ccccCccccccCCCCccccCCCCCCCc-chh--------------hHHHHHhhcC
Q 001373 39 CQICGDEIEITDNGEPFVACNECAFPV-CRP--------------CYEYERREGN 78 (1091)
Q Consensus 39 C~iCgd~vg~~~~Ge~fvaC~eC~fpv-Crp--------------CyeyerkeG~ 78 (1091)
|+-|... .+.+.-..|+.|-||+ |-. || ||..+++
T Consensus 55 C~fC~~~----~~~~~~~~C~~CfFPl~c~~~~~eEla~Y~LLSVCy-~E~~~~~ 104 (173)
T PF11077_consen 55 CDFCYAV----NTETDRLFCKQCFFPLYCTNGIDEELATYCLLSVCY-WESNEDS 104 (173)
T ss_pred hhHHHhc----ccchhHHHHHhccccccccccchHHHHHHHHHHHHH-hhccccc
Confidence 9999876 2344578899999999 654 77 7766664
No 123
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=45.48 E-value=8.7 Score=45.77 Aligned_cols=58 Identities=26% Similarity=0.611 Sum_probs=38.5
Q ss_pred CccccccCccccccCCCCccccCCCCC-CCcchhhHHHHHhhcCCCCCCChhhcccccC--CCCCCCC
Q 001373 36 GQICQICGDEIEITDNGEPFVACNECA-FPVCRPCYEYERREGNQACPQCKTRYKRIKG--SPRVDGD 100 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~-fpvCrpCyeyerkeG~~~CpqCkt~Ykr~kg--sprv~gd 100 (1091)
...|-.|..+|. |-.+|-|.||. |-+|-+|+---..-|.. ||.-+|+-.+. .|.+.+|
T Consensus 14 ky~C~~C~~dit----~~i~ikCaeCp~fdLCl~CFs~GaE~~~H---~~~H~Yrim~~~s~~i~~~~ 74 (438)
T KOG0457|consen 14 KYNCDYCSLDIT----GLIRIKCAECPDFDLCLQCFSVGAETGKH---QNDHPYRIMDTNSFPILDPS 74 (438)
T ss_pred CCCCccHhHHhc----cceEEEeecCCCcchhHHHHhcccccCCC---CCCCCceeecCCCCCCCCCC
Confidence 348999998764 67899999998 99999999322222222 34456655543 4555555
No 124
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=43.74 E-value=6.6 Score=38.86 Aligned_cols=27 Identities=22% Similarity=0.571 Sum_probs=18.2
Q ss_pred cccCCCCCCCcchhhHHHHHhhcCCCCCCChhhc
Q 001373 55 FVACNECAFPVCRPCYEYERREGNQACPQCKTRY 88 (1091)
Q Consensus 55 fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Y 88 (1091)
-.-|+.|+ ++++..+-.-.||+|+.+=
T Consensus 70 ~~~C~~Cg-------~~~~~~~~~~~CP~Cgs~~ 96 (113)
T PRK12380 70 QAWCWDCS-------QVVEIHQHDAQCPHCHGER 96 (113)
T ss_pred EEEcccCC-------CEEecCCcCccCcCCCCCC
Confidence 35577776 4566655556799999753
No 125
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=43.00 E-value=6.4e+02 Score=29.89 Aligned_cols=19 Identities=21% Similarity=0.559 Sum_probs=14.2
Q ss_pred hccCcccccccchhhHHHh
Q 001373 923 QWGGVGIHDWWRNEQFWVI 941 (1091)
Q Consensus 923 ~wsG~si~~wWrne~~W~I 941 (1091)
+-.|-.++.||...-|+.+
T Consensus 173 ~~NGS~Ik~WW~~HHy~s~ 191 (330)
T PF07851_consen 173 IVNGSRIKGWWVFHHYIST 191 (330)
T ss_pred ccCCCcchHHHHHHHHHHH
Confidence 3457788999988888743
No 126
>PRK07220 DNA topoisomerase I; Validated
Probab=40.37 E-value=12 Score=48.22 Aligned_cols=48 Identities=19% Similarity=0.653 Sum_probs=32.4
Q ss_pred ccccccCcccccc--CCCCccccCCCCCCCcchhhHHHHHh----hcCCCCCCChh
Q 001373 37 QICQICGDEIEIT--DNGEPFVACNECAFPVCRPCYEYERR----EGNQACPQCKT 86 (1091)
Q Consensus 37 ~~C~iCgd~vg~~--~~Ge~fvaC~eC~fpvCrpCyeyerk----eG~~~CpqCkt 86 (1091)
..|..||.++... ..|..|..|. +||-|+-.+-..++ .-+..||.|+.
T Consensus 590 ~~CP~Cg~~l~~r~~r~g~~f~gCs--~yp~C~~~~~l~~~g~~~~~~~~Cp~Cg~ 643 (740)
T PRK07220 590 GKCPLCGSDLMVRRSKRGSRFIGCE--GYPECTFSLPLPKSGQIIVTDKVCEAHGL 643 (740)
T ss_pred cccccCCCeeeEEecCCCceEEEcC--CCCCCCceeeCCCCCccccCCCCCCCCCC
Confidence 4899999875542 3466799996 67888755533221 13578999985
No 127
>COG0551 TopA Zn-finger domain associated with topoisomerase type I [DNA replication, recombination, and repair]
Probab=39.87 E-value=15 Score=37.19 Aligned_cols=49 Identities=33% Similarity=0.799 Sum_probs=36.4
Q ss_pred cCCccccccCccccc--cCCCCccccCCCCCCCcchhhHHH---HHhhcCCCCCCChh
Q 001373 34 LSGQICQICGDEIEI--TDNGEPFVACNECAFPVCRPCYEY---ERREGNQACPQCKT 86 (1091)
Q Consensus 34 ~~~~~C~iCgd~vg~--~~~Ge~fvaC~eC~fpvCrpCyey---erkeG~~~CpqCkt 86 (1091)
..+++|..||....+ ...| -|+.|. .||.|+- |+- +..+....||+|+.
T Consensus 15 ~~~~~Cp~Cg~~m~~~~~~~g-~f~gCs--~yP~C~~-~~~~~~~~~~~~~~Cp~C~~ 68 (140)
T COG0551 15 KTGQICPKCGKNMVKKFGKYG-IFLGCS--NYPKCDY-YEPEKAIAEKTGVKCPKCGK 68 (140)
T ss_pred ccCccCCcCCCeeEEEEccCC-eEEEeC--CCCCCCC-CcccccccccCceeCCCCCC
Confidence 457899999999655 4568 999994 6999996 221 12356689999996
No 128
>cd02335 ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=39.07 E-value=21 Score=30.16 Aligned_cols=30 Identities=33% Similarity=1.017 Sum_probs=25.1
Q ss_pred cccccCccccccCCCCccccCCCC-CCCcchhhHH
Q 001373 38 ICQICGDEIEITDNGEPFVACNEC-AFPVCRPCYE 71 (1091)
Q Consensus 38 ~C~iCgd~vg~~~~Ge~fvaC~eC-~fpvCrpCye 71 (1091)
.|..|+.++. +...+.|.+| .|-+|-+||.
T Consensus 2 ~Cd~C~~~~~----~g~r~~C~~C~d~dLC~~Cf~ 32 (49)
T cd02335 2 HCDYCSKDIT----GTIRIKCAECPDFDLCLECFS 32 (49)
T ss_pred CCCCcCCCCC----CCcEEECCCCCCcchhHHhhh
Confidence 5888987653 4488999999 9999999995
No 129
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=39.00 E-value=9.4 Score=38.01 Aligned_cols=29 Identities=17% Similarity=0.635 Sum_probs=16.6
Q ss_pred ccCCCCCCCcchhhHHHHHhhcC-CCCCCChhhcccc
Q 001373 56 VACNECAFPVCRPCYEYERREGN-QACPQCKTRYKRI 91 (1091)
Q Consensus 56 vaC~eC~fpvCrpCyeyerkeG~-~~CpqCkt~Ykr~ 91 (1091)
.-|+.|+ ++++..+-. ..||+|+.+-.+.
T Consensus 72 ~~C~~Cg-------~~~~~~~~~~~~CP~Cgs~~~~i 101 (117)
T PRK00564 72 LECKDCS-------HVFKPNALDYGVCEKCHSKNVII 101 (117)
T ss_pred EEhhhCC-------CccccCCccCCcCcCCCCCceEE
Confidence 4466665 334443322 3599999875444
No 130
>cd02249 ZZ Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.
Probab=38.94 E-value=21 Score=29.70 Aligned_cols=30 Identities=33% Similarity=0.800 Sum_probs=24.4
Q ss_pred cccccCccccccCCCCccccCCCCC-CCcchhhHHH
Q 001373 38 ICQICGDEIEITDNGEPFVACNECA-FPVCRPCYEY 72 (1091)
Q Consensus 38 ~C~iCgd~vg~~~~Ge~fvaC~eC~-fpvCrpCyey 72 (1091)
.|.+|+..| . | ....|.+|. |-+|.+||..
T Consensus 2 ~C~~C~~~i--~--g-~r~~C~~C~d~dLC~~Cf~~ 32 (46)
T cd02249 2 SCDGCLKPI--V--G-VRYHCLVCEDFDLCSSCYAK 32 (46)
T ss_pred CCcCCCCCC--c--C-CEEECCCCCCCcCHHHHHCc
Confidence 588999843 2 5 788999997 9999999953
No 131
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=38.45 E-value=24 Score=42.15 Aligned_cols=53 Identities=25% Similarity=0.622 Sum_probs=36.6
Q ss_pred ccccccCC-ccccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhcc
Q 001373 29 TSVKELSG-QICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1091)
Q Consensus 29 ~~~~~~~~-~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Yk 89 (1091)
+.+..+.. ..|.||.+..- ++.+ -.|+--.|..|...-... ...||.|++.+.
T Consensus 18 ~~l~~Le~~l~C~IC~d~~~-----~Pvi--tpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~ 71 (397)
T TIGR00599 18 PSLYPLDTSLRCHICKDFFD-----VPVL--TSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQ 71 (397)
T ss_pred ccccccccccCCCcCchhhh-----CccC--CCCCCchhHHHHHHHHhC-CCCCCCCCCccc
Confidence 33555444 48999988642 2333 368999999999755443 458999999874
No 132
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=38.23 E-value=12 Score=43.37 Aligned_cols=31 Identities=29% Similarity=0.876 Sum_probs=25.6
Q ss_pred CCCcchhhHHHHHhhcC--CCCCCChhhccccc
Q 001373 62 AFPVCRPCYEYERREGN--QACPQCKTRYKRIK 92 (1091)
Q Consensus 62 ~fpvCrpCyeyerkeG~--~~CpqCkt~Ykr~k 92 (1091)
+|.|||.|+---|-+-+ +-||-|.++||.-|
T Consensus 1 ~yqIc~~cwh~i~~~~~~~grcpncr~ky~e~k 33 (327)
T KOG2068|consen 1 GYQICDSCWHHIATSAEKKGRCPNCRTKYKEEK 33 (327)
T ss_pred CceeeHHHHhccccccccccCCccccCccchhh
Confidence 57899999977766666 99999999997643
No 133
>COG4739 Uncharacterized protein containing a ferredoxin domain [Function unknown]
Probab=37.99 E-value=19 Score=37.42 Aligned_cols=45 Identities=22% Similarity=0.513 Sum_probs=40.7
Q ss_pred cccccCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhcc
Q 001373 45 EIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1091)
Q Consensus 45 ~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Yk 89 (1091)
-||+..+|-.-+-|.-|+|.-|..=.|-++.+-+-.=|+|--+|-
T Consensus 77 LIG~Kasg~~glnCgaCGfesC~e~~e~~k~~eeF~GP~C~~k~i 121 (182)
T COG4739 77 LIGVKASGTVGLNCGACGFESCSEMLERDKVGEEFVGPNCMFKYI 121 (182)
T ss_pred EEEeccCCccccccccccchhHHHHHHHHhhhhhccCcchhhhhh
Confidence 478888999999999999999999998888888899999999994
No 134
>PF03884 DUF329: Domain of unknown function (DUF329); InterPro: IPR005584 The biological function of these short proteins is unknown, but they contain four conserved cysteines, suggesting that they all bind zinc. YacG (Q5X8H6 from SWISSPROT) from Escherichia coli has been shown to bind zinc and contains the structural motifs typical of zinc-binding proteins []. The conserved four cysteine motif in these proteins (-C-X(2)-C-X(15)-C-X(3)-C-) is not found in other zinc-binding proteins with known structures.; GO: 0008270 zinc ion binding; PDB: 1LV3_A.
Probab=37.77 E-value=19 Score=31.86 Aligned_cols=33 Identities=27% Similarity=0.501 Sum_probs=12.9
Q ss_pred hhcCCCCCCChhhcc------cccCCCCCCCCCCCCCcc
Q 001373 75 REGNQACPQCKTRYK------RIKGSPRVDGDEEEDDTD 107 (1091)
Q Consensus 75 keG~~~CpqCkt~Yk------r~kgsprv~gd~ee~~~d 107 (1091)
.+.|..-|=|-+|-| -..|+=||+|.+++++.+
T Consensus 15 ~~~n~~rPFCS~RCk~iDLg~W~~e~Y~Ip~~~~~~~~~ 53 (57)
T PF03884_consen 15 SPENPFRPFCSERCKLIDLGRWANEEYRIPGEPDDEDED 53 (57)
T ss_dssp SSSSS--SSSSHHHHHHHHS-SSSSS----SSS-SS-S-
T ss_pred cCCCCcCCcccHhhcccCHHHHhcCCcccCCCCCCcccc
Confidence 344555555555543 245777888886544433
No 135
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=37.59 E-value=4.2 Score=40.09 Aligned_cols=13 Identities=31% Similarity=0.769 Sum_probs=8.2
Q ss_pred CCCCCChhhcccc
Q 001373 79 QACPQCKTRYKRI 91 (1091)
Q Consensus 79 ~~CpqCkt~Ykr~ 91 (1091)
-.||+|+.+..+.
T Consensus 87 ~~CP~Cgs~~~~i 99 (113)
T PF01155_consen 87 FSCPRCGSPDVEI 99 (113)
T ss_dssp HH-SSSSSS-EEE
T ss_pred CCCcCCcCCCcEE
Confidence 3499999987554
No 136
>TIGR02443 conserved hypothetical metal-binding protein. Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N-terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various Proteobacteria.
Probab=37.32 E-value=18 Score=32.21 Aligned_cols=31 Identities=26% Similarity=0.770 Sum_probs=24.7
Q ss_pred cCCccccccCcc---ccccCCCCccccCCCCCCC
Q 001373 34 LSGQICQICGDE---IEITDNGEPFVACNECAFP 64 (1091)
Q Consensus 34 ~~~~~C~iCgd~---vg~~~~Ge~fvaC~eC~fp 64 (1091)
..|-+|.-|+.- +...+||...+-|-+|+|.
T Consensus 7 IAGA~CP~C~~~Dtl~~~~e~~~e~vECv~Cg~~ 40 (59)
T TIGR02443 7 IAGAVCPACSAQDTLAMWKENNIELVECVECGYQ 40 (59)
T ss_pred eccccCCCCcCccEEEEEEeCCceEEEeccCCCc
Confidence 457789999854 4556899999999999985
No 137
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=36.83 E-value=12 Score=33.04 Aligned_cols=12 Identities=42% Similarity=1.157 Sum_probs=6.6
Q ss_pred CCCCCChhhccc
Q 001373 79 QACPQCKTRYKR 90 (1091)
Q Consensus 79 ~~CpqCkt~Ykr 90 (1091)
-+||+||+-|..
T Consensus 45 PVCP~Ck~iye~ 56 (58)
T PF11238_consen 45 PVCPECKEIYES 56 (58)
T ss_pred CCCcCHHHHHHh
Confidence 345666666643
No 138
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=35.23 E-value=29 Score=44.03 Aligned_cols=55 Identities=35% Similarity=0.870 Sum_probs=39.6
Q ss_pred cCCccccccCccccccCCCC---ccccCCCCC--------------------CCcchhhHH-HH----Hh--hcCCCCCC
Q 001373 34 LSGQICQICGDEIEITDNGE---PFVACNECA--------------------FPVCRPCYE-YE----RR--EGNQACPQ 83 (1091)
Q Consensus 34 ~~~~~C~iCgd~vg~~~~Ge---~fvaC~eC~--------------------fpvCrpCye-ye----rk--eG~~~Cpq 83 (1091)
..-.+|.-|=.++---.+=. +|..|..|| ||.|-.|-+ |+ |+ --.-+||.
T Consensus 99 pD~a~C~~Cl~Ei~dp~~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~nRRfHAQp~aCp~ 178 (750)
T COG0068 99 PDAATCEDCLEEIFDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPLNRRFHAQPIACPK 178 (750)
T ss_pred CchhhhHHHHHHhcCCCCcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCccccccccccccCcc
Confidence 34568999999875443332 699999994 999999974 33 33 22369999
Q ss_pred Chhhc
Q 001373 84 CKTRY 88 (1091)
Q Consensus 84 Ckt~Y 88 (1091)
|+-.|
T Consensus 179 CGP~~ 183 (750)
T COG0068 179 CGPHL 183 (750)
T ss_pred cCCCe
Confidence 99754
No 139
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=35.16 E-value=33 Score=30.31 Aligned_cols=47 Identities=30% Similarity=0.762 Sum_probs=34.2
Q ss_pred cccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhccc
Q 001373 38 ICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (1091)
Q Consensus 38 ~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Ykr 90 (1091)
-|..|+.++--+. .+-++-=.||-| |.+|-|-.. +..||-|+--+-+
T Consensus 7 nCE~C~~dLp~~s-~~A~ICSfECTF--C~~C~e~~l---~~~CPNCgGelv~ 53 (57)
T PF06906_consen 7 NCECCDKDLPPDS-PEAYICSFECTF--CADCAETML---NGVCPNCGGELVR 53 (57)
T ss_pred CccccCCCCCCCC-CcceEEeEeCcc--cHHHHHHHh---cCcCcCCCCcccc
Confidence 6999999865543 244555578887 999997654 4799999876643
No 140
>PF09484 Cas_TM1802: CRISPR-associated protein TM1802 (cas_TM1802); InterPro: IPR013389 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor class of Cas proteins found in at least five prokaryotic genomes: Methanosarcina mazei, Sulfurihydrogenibium azorense, Thermotoga maritima, Carboxydothermus hydrogenoformans, and Dictyoglomus thermophilum, the first of which is archaeal while the rest are bacterial [].
Probab=34.88 E-value=20 Score=44.81 Aligned_cols=44 Identities=30% Similarity=0.610 Sum_probs=26.6
Q ss_pred ccCCccccccCccccccCCCCc-----------ccc-----CCCCCCCcchhhHHHHHhhc
Q 001373 33 ELSGQICQICGDEIEITDNGEP-----------FVA-----CNECAFPVCRPCYEYERREG 77 (1091)
Q Consensus 33 ~~~~~~C~iCgd~vg~~~~Ge~-----------fva-----C~eC~fpvCrpCyeyerkeG 77 (1091)
.....+|.|||.+-.++.+-.. |++ =.-=.||||..||..- .+|
T Consensus 195 ~~~~g~C~iCg~~~~V~~~~~~~~Kfyt~DK~gf~~g~~~k~~~knfpiC~~C~~~l-~~G 254 (593)
T PF09484_consen 195 SKKDGVCSICGKEKEVYGDVSKPFKFYTTDKPGFASGFDKKNAWKNFPICQDCALKL-EEG 254 (593)
T ss_pred cCCCCeEEeCCCCCeecccchhhheeeecCCcccccccccccccccChhhHHHHHHH-HHH
Confidence 3455689999999544444322 222 0123789999999543 344
No 141
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=34.62 E-value=12 Score=37.18 Aligned_cols=29 Identities=28% Similarity=0.564 Sum_probs=17.1
Q ss_pred ccCCCCCCCcchhhHHHHHhhcC-CCCCCChhhcccc
Q 001373 56 VACNECAFPVCRPCYEYERREGN-QACPQCKTRYKRI 91 (1091)
Q Consensus 56 vaC~eC~fpvCrpCyeyerkeG~-~~CpqCkt~Ykr~ 91 (1091)
.-|+.|+ ++++..+-. -.||+|+.+=.+.
T Consensus 71 ~~C~~Cg-------~~~~~~~~~~~~CP~Cgs~~~~i 100 (114)
T PRK03681 71 CWCETCQ-------QYVTLLTQRVRRCPQCHGDMLRI 100 (114)
T ss_pred EEcccCC-------CeeecCCccCCcCcCcCCCCcEE
Confidence 4476666 244444443 5699999764333
No 142
>KOG3736 consensus Polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=34.44 E-value=47 Score=41.58 Aligned_cols=49 Identities=16% Similarity=0.075 Sum_probs=41.7
Q ss_pred CCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCchh
Q 001373 362 PSDLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAM 413 (1091)
Q Consensus 362 ~~~lP~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ 413 (1091)
.+.||.+-|+|+-+| |...+...||-|+...-=|.---.+.|.||+...
T Consensus 138 ~~~Lp~~Svii~f~n---E~~s~llRtv~Svi~rtp~~lLkEIiLVdD~S~~ 186 (578)
T KOG3736|consen 138 SDKLPTTSVIIIFHN---EAWSTLLRTVHSVINRTPPYLLKEIILVDDFSDR 186 (578)
T ss_pred ccccCCCceEEEEec---CCCcchhheEEeehccCChhHeEEEEEeecCcch
Confidence 456999999999999 9999999999999988766556678899998754
No 143
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=34.29 E-value=19 Score=27.25 Aligned_cols=28 Identities=39% Similarity=1.017 Sum_probs=12.0
Q ss_pred cccccCccccccCCCCccccCCCCCCCcchhh
Q 001373 38 ICQICGDEIEITDNGEPFVACNECAFPVCRPC 69 (1091)
Q Consensus 38 ~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpC 69 (1091)
.|.+|+..+. |+.+--|.+|.|-+...|
T Consensus 2 ~C~~C~~~~~----~~~~Y~C~~Cdf~lH~~C 29 (30)
T PF07649_consen 2 RCDACGKPID----GGWFYRCSECDFDLHEEC 29 (30)
T ss_dssp --TTTS--------S--EEE-TTT-----HHH
T ss_pred cCCcCCCcCC----CCceEECccCCCccChhc
Confidence 5899998854 367889999999998877
No 144
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=34.21 E-value=10 Score=29.50 Aligned_cols=14 Identities=29% Similarity=0.636 Sum_probs=10.1
Q ss_pred hcCCCCCCChhhcc
Q 001373 76 EGNQACPQCKTRYK 89 (1091)
Q Consensus 76 eG~~~CpqCkt~Yk 89 (1091)
+....||.|+.+-.
T Consensus 15 ~~~~~CP~Cg~~~~ 28 (33)
T cd00350 15 EAPWVCPVCGAPKD 28 (33)
T ss_pred cCCCcCcCCCCcHH
Confidence 36678999987643
No 145
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=33.91 E-value=13 Score=36.79 Aligned_cols=29 Identities=21% Similarity=0.584 Sum_probs=17.2
Q ss_pred ccCCCCCCCcchhhHHHHHhhcCCCCCCChhhcccc
Q 001373 56 VACNECAFPVCRPCYEYERREGNQACPQCKTRYKRI 91 (1091)
Q Consensus 56 vaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Ykr~ 91 (1091)
.-|+.|+ ++++..+-...||+|+.+=.+.
T Consensus 71 ~~C~~Cg-------~~~~~~~~~~~CP~Cgs~~~~i 99 (115)
T TIGR00100 71 CECEDCS-------EEVSPEIDLYRCPKCHGIMLQV 99 (115)
T ss_pred EEcccCC-------CEEecCCcCccCcCCcCCCcEE
Confidence 4465555 3344444456799999765444
No 146
>COG2191 Formylmethanofuran dehydrogenase subunit E [Energy production and conversion]
Probab=33.66 E-value=22 Score=38.80 Aligned_cols=26 Identities=42% Similarity=0.945 Sum_probs=20.0
Q ss_pred CccccccCcccccc----CCCCccccCCCCCCCcchhhHH
Q 001373 36 GQICQICGDEIEIT----DNGEPFVACNECAFPVCRPCYE 71 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~----~~Ge~fvaC~eC~fpvCrpCye 71 (1091)
..+|..||+-++-. .||+ |||+|||+
T Consensus 172 ~v~C~kCGE~~~e~~~~~~ng~----------~vC~~C~~ 201 (206)
T COG2191 172 SVRCSKCGELFMEPRAVVLNGK----------PVCKPCAE 201 (206)
T ss_pred eeeccccCcccccchhhhcCCc----------eecccccc
Confidence 35999999987653 3676 78999995
No 147
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=33.44 E-value=35 Score=27.86 Aligned_cols=43 Identities=23% Similarity=0.743 Sum_probs=31.2
Q ss_pred ccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChh
Q 001373 39 CQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKT 86 (1091)
Q Consensus 39 C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt 86 (1091)
|.+|-.+. +++..+++ = .|+=-+|..|.+--- .....||.|++
T Consensus 2 C~~C~~~~--~~~~~~~l-~-~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 2 CNICFEKY--SEERRPRL-T-SCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CcCcCccc--cCCCCeEE-c-ccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 88898887 33333322 2 679999999995554 67789999985
No 148
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=32.95 E-value=34 Score=38.76 Aligned_cols=41 Identities=24% Similarity=0.417 Sum_probs=27.2
Q ss_pred hhhHhhhhhccCCCCCCCCceeEEEecCCCCCCCHHHHHHHH
Q 001373 348 YLDRLSLRYEKEGKPSDLADIDIFVSTVDPMKEPPLITANTV 389 (1091)
Q Consensus 348 ~~~rL~~r~~~~~~~~~lP~VDvfV~T~dP~kEPp~v~~nTv 389 (1091)
-+|.|++-++.=.....+|.|=|||+ +||+..++.++++-+
T Consensus 158 ELeKm~~~Vd~i~~~~~~~~~PlFIs-vDPeRD~~~~~~eY~ 198 (280)
T KOG2792|consen 158 ELEKMSAVVDEIEAKPGLPPVPLFIS-VDPERDSVEVVAEYV 198 (280)
T ss_pred HHHHHHHHHHHHhccCCCCccceEEE-eCcccCCHHHHHHHH
Confidence 35555554432223356788878886 699999998887744
No 149
>COG4818 Predicted membrane protein [Function unknown]
Probab=32.86 E-value=4.3e+02 Score=26.06 Aligned_cols=26 Identities=35% Similarity=0.459 Sum_probs=18.0
Q ss_pred hhhhHHHHHHHHHHHHHHhcCCccce
Q 001373 941 IGGASSHLFALIQGLLKVVGGVNTNF 966 (1091)
Q Consensus 941 I~~~sa~lfAv~~aLlk~L~g~~~~F 966 (1091)
|.+...++++.+.+++-.|.-++.+|
T Consensus 5 iegaLCY~lgwitGllFlllEre~~F 30 (105)
T COG4818 5 IEGALCYLLGWITGLLFLLLERESKF 30 (105)
T ss_pred hhhHHHHHHHHHHHHHHHHhhccCcc
Confidence 34555777888888887776666666
No 150
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=32.22 E-value=13 Score=43.42 Aligned_cols=45 Identities=33% Similarity=0.750 Sum_probs=37.8
Q ss_pred cccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhc
Q 001373 38 ICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRY 88 (1091)
Q Consensus 38 ~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Y 88 (1091)
+|.||-+=+-.+-. =-||+-..|+.|.--..++||..||-|++.-
T Consensus 45 ~c~icl~llk~tmt------tkeClhrfc~~ci~~a~r~gn~ecptcRk~l 89 (381)
T KOG0311|consen 45 ICPICLSLLKKTMT------TKECLHRFCFDCIWKALRSGNNECPTCRKKL 89 (381)
T ss_pred ccHHHHHHHHhhcc------cHHHHHHHHHHHHHHHHHhcCCCCchHHhhc
Confidence 89999887655422 2389999999999999999999999999876
No 151
>COG4707 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.21 E-value=19 Score=34.90 Aligned_cols=43 Identities=37% Similarity=0.645 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCccccCCC-------CCCCCCCCCCCchhhhhhhcCCC
Q 001373 470 KREYEEFKVRINGLVAMAQKVPEDGWTMQDG-------TPWPGNNVRDHPGMIQVFLGQNG 523 (1091)
Q Consensus 470 kreYee~k~rI~~l~~~~~~~p~~~w~m~dg-------~~w~g~~~rdHp~iiqv~l~~~g 523 (1091)
|.||+|+|.. ..++|+|+|= +.|.-.+--.||.+.+.|--.+|
T Consensus 20 k~eyqel~~~-----------~~d~W~m~Dlk~k~~~~sd~tiknlL~hPrl~k~L~ieng 69 (107)
T COG4707 20 KVEYQELKEK-----------DFDGWVMMDLKEKKSNRSDWTIKNLLLHPRLKKMLSIENG 69 (107)
T ss_pred HHHHHHHHHh-----------hhcchhhhHHHHHhcccchhHHHHHhcCchhhhheeeecC
Confidence 5699998853 1358999874 35654455688888887765555
No 152
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=32.20 E-value=11 Score=32.39 Aligned_cols=7 Identities=43% Similarity=1.365 Sum_probs=3.3
Q ss_pred CCCCChh
Q 001373 80 ACPQCKT 86 (1091)
Q Consensus 80 ~CpqCkt 86 (1091)
.||+|+.
T Consensus 36 ~CP~C~a 42 (50)
T cd00730 36 VCPVCGA 42 (50)
T ss_pred CCCCCCC
Confidence 4555543
No 153
>PRK11827 hypothetical protein; Provisional
Probab=31.82 E-value=27 Score=31.17 Aligned_cols=32 Identities=22% Similarity=0.430 Sum_probs=17.3
Q ss_pred CcchhhHHHHHhhcCCCCCCChhhcccccCCC
Q 001373 64 PVCRPCYEYERREGNQACPQCKTRYKRIKGSP 95 (1091)
Q Consensus 64 pvCrpCyeyerkeG~~~CpqCkt~Ykr~kgsp 95 (1091)
|+|+-=.+|...+..-.|..|+-.|--..|=|
T Consensus 12 P~ckg~L~~~~~~~~Lic~~~~laYPI~dgIP 43 (60)
T PRK11827 12 PVCNGKLWYNQEKQELICKLDNLAFPLRDGIP 43 (60)
T ss_pred CCCCCcCeEcCCCCeEECCccCeeccccCCcc
Confidence 44443333433333456777888886655544
No 154
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=30.85 E-value=23 Score=30.46 Aligned_cols=29 Identities=24% Similarity=0.586 Sum_probs=20.8
Q ss_pred CccccccCccccccCCCCccccCCCCCCCc
Q 001373 36 GQICQICGDEIEITDNGEPFVACNECAFPV 65 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpv 65 (1091)
.-.|..||.+|.++. ...-+.|..|++.|
T Consensus 6 ~Y~C~~Cg~~~~~~~-~~~~irCp~Cg~rI 34 (49)
T COG1996 6 EYKCARCGREVELDQ-ETRGIRCPYCGSRI 34 (49)
T ss_pred EEEhhhcCCeeehhh-ccCceeCCCCCcEE
Confidence 458999999995443 22348898898865
No 155
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=30.68 E-value=19 Score=38.17 Aligned_cols=34 Identities=38% Similarity=0.959 Sum_probs=22.1
Q ss_pred ccccccCccccc----cCCCC-ccccCCCCCCCcchhhH
Q 001373 37 QICQICGDEIEI----TDNGE-PFVACNECAFPVCRPCY 70 (1091)
Q Consensus 37 ~~C~iCgd~vg~----~~~Ge-~fvaC~eC~fpvCrpCy 70 (1091)
.+|..||.+--. ..+|+ ..|--+|--.||||.||
T Consensus 138 avC~~Cg~~A~~t~R~~~~~~~i~iGg~e~Y~~~Cr~cy 176 (176)
T PF00265_consen 138 AVCEVCGRKATFTQRIVDDGEQILIGGSEKYEPVCRKCY 176 (176)
T ss_dssp EE-TTTSSEE-EEEEEETTSSSS-TTSTTTEEEE-CTTH
T ss_pred cEECCCCCceeEEEEEcCCCCEEEECCCCeEEEechhhC
Confidence 589999988333 24454 35666788899999998
No 156
>PRK14873 primosome assembly protein PriA; Provisional
Probab=30.53 E-value=31 Score=43.95 Aligned_cols=10 Identities=30% Similarity=1.036 Sum_probs=5.5
Q ss_pred CCCCCCChhh
Q 001373 78 NQACPQCKTR 87 (1091)
Q Consensus 78 ~~~CpqCkt~ 87 (1091)
...||.|+..
T Consensus 422 p~~Cp~Cgs~ 431 (665)
T PRK14873 422 DWRCPRCGSD 431 (665)
T ss_pred CccCCCCcCC
Confidence 3456666554
No 157
>PRK14973 DNA topoisomerase I; Provisional
Probab=30.51 E-value=26 Score=46.20 Aligned_cols=47 Identities=23% Similarity=0.708 Sum_probs=31.3
Q ss_pred ccccccCcccccc--CCCCccccCCCCCCCcchhhHHHHHh-hc-----CCCCCCChh
Q 001373 37 QICQICGDEIEIT--DNGEPFVACNECAFPVCRPCYEYERR-EG-----NQACPQCKT 86 (1091)
Q Consensus 37 ~~C~iCgd~vg~~--~~Ge~fvaC~eC~fpvCrpCyeyerk-eG-----~~~CpqCkt 86 (1091)
..|..||.++-+. ..|. |..|. +||-|+-.+...+. .| .+.||.|+.
T Consensus 589 ~~CP~CG~~l~ik~~k~gk-FigCS--~Yp~Ck~t~~L~~~~~g~~~~~~~~Cp~CG~ 643 (936)
T PRK14973 589 GPCPVCGKDLRIKHIGSSQ-FIGCS--GYPDCTFNIGLPGTTWGWAIRTDEVCPIHHL 643 (936)
T ss_pred ccCCcccccceeecccCce-eEECC--CCCCCCccccCCccccccCCCCCCCCCCCCC
Confidence 4799999876432 3454 99996 66888855544222 12 368999997
No 158
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=30.29 E-value=34 Score=39.66 Aligned_cols=44 Identities=25% Similarity=0.635 Sum_probs=29.2
Q ss_pred CCccccccCccc--c--c---cCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhh
Q 001373 35 SGQICQICGDEI--E--I---TDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTR 87 (1091)
Q Consensus 35 ~~~~C~iCgd~v--g--~---~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~ 87 (1091)
+-+.|.+||..= + . +.+|.-+.-|.-|+. |.+-.+-.||.|+..
T Consensus 183 ~~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~t---------eW~~~R~~C~~Cg~~ 233 (305)
T TIGR01562 183 SRTLCPACGSPPVASMVRQGGKETGLRYLSCSLCAT---------EWHYVRVKCSHCEES 233 (305)
T ss_pred CCCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCC---------cccccCccCCCCCCC
Confidence 345999999881 1 1 258889999988764 333334567777653
No 159
>TIGR02460 osmo_MPGsynth mannosyl-3-phosphoglycerate synthase. This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together mannosyl-3-phosphoglycerate phosphatase (MPGP) comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus, this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.
Probab=30.12 E-value=1.4e+02 Score=35.41 Aligned_cols=41 Identities=24% Similarity=0.239 Sum_probs=28.8
Q ss_pred CCCCcchhhHHHHHhhccccCCCEEEEecCCCCCCcHHHHHHHH
Q 001373 547 DHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAM 590 (1091)
Q Consensus 547 ~hh~KAGalNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~am 590 (1091)
=.+.|+-.|=-.+-... +.+.+||-.+|||.|+| -++.|-.
T Consensus 140 VR~GKgEGMiiG~lLAk-~~g~~YVGFiDaDNyiP--GaV~EYv 180 (381)
T TIGR02460 140 VRSGKGEGMLLGLLLAK-AIGAEYVGFVDADNYFP--GAVNEYV 180 (381)
T ss_pred eecCcchHHHHHHHHHH-HhCCceEeEeecccCCC--chHHHHH
Confidence 34568888864333222 45899999999999985 4666654
No 160
>PRK07219 DNA topoisomerase I; Validated
Probab=29.99 E-value=24 Score=45.90 Aligned_cols=53 Identities=28% Similarity=0.736 Sum_probs=30.7
Q ss_pred CccccccCcccccc--CCCCccccCCCCCCCcchhhHHHHH----hhcCCCCCCChhhcccc
Q 001373 36 GQICQICGDEIEIT--DNGEPFVACNECAFPVCRPCYEYER----REGNQACPQCKTRYKRI 91 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~--~~Ge~fvaC~eC~fpvCrpCyeyer----keG~~~CpqCkt~Ykr~ 91 (1091)
...|..||..+... ..|. |..|. +||-|+--+..-+ ..-...||.|+.+..+.
T Consensus 688 ~~~CP~Cg~~l~~k~gr~G~-F~~Cs--~yp~C~~~~~l~~~~~~~~~~~~CpkCg~~l~~~ 746 (822)
T PRK07219 688 IGPCPKCGGELAIKQLKYGS-FLGCT--NYPKCKYTLPLPRRGKITVTDEKCPECGLPLLRV 746 (822)
T ss_pred cccCCCCCCeeEEEcCCCCC-eeeCC--CCCCCCceeecccccccccccCCCCCCCCeEEEE
Confidence 34677787664432 3454 88885 6777753322111 12347899998866543
No 161
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=28.87 E-value=34 Score=28.37 Aligned_cols=45 Identities=24% Similarity=0.766 Sum_probs=31.3
Q ss_pred cccccCccccccCCCCccccCCCCCCCcchhhHHHHH-----hhcCCCCCCChh
Q 001373 38 ICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYER-----REGNQACPQCKT 86 (1091)
Q Consensus 38 ~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyer-----keG~~~CpqCkt 86 (1091)
+|++||. ..+++..|.|..|.--+=..|..... .++.=.||.|+.
T Consensus 1 ~C~vC~~----~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQ----SDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTS----SCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCC----cCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 5899998 56677899999998666666665432 233566776653
No 162
>PRK11595 DNA utilization protein GntX; Provisional
Probab=28.42 E-value=32 Score=37.72 Aligned_cols=39 Identities=23% Similarity=0.675 Sum_probs=25.8
Q ss_pred CccccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhh
Q 001373 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTR 87 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~ 87 (1091)
...|.+||..+..++ ..+|..|.+.-..- ...||+|+.+
T Consensus 5 P~~C~~C~~~~~~~~------------~~lC~~C~~~l~~~-~~~C~~Cg~~ 43 (227)
T PRK11595 5 PGLCWLCRMPLALSH------------WGICSVCSRALRTL-KTCCPQCGLP 43 (227)
T ss_pred CCcCccCCCccCCCC------------CcccHHHHhhCCcc-cCcCccCCCc
Confidence 357999998864321 24788887654332 3589999865
No 163
>PRK04296 thymidine kinase; Provisional
Probab=28.40 E-value=26 Score=37.24 Aligned_cols=35 Identities=34% Similarity=0.657 Sum_probs=23.8
Q ss_pred ccccccCcccccc----------CCCCc-cccCCCCCCCcchhhHH
Q 001373 37 QICQICGDEIEIT----------DNGEP-FVACNECAFPVCRPCYE 71 (1091)
Q Consensus 37 ~~C~iCgd~vg~~----------~~Ge~-fvaC~eC~fpvCrpCye 71 (1091)
.+|..||.+--.| .+|+. .+--.|=-.|+||.||.
T Consensus 141 ~vC~~Cg~~a~~~~r~~~~~~~~~~~~~~~ig~~e~Y~~~Cr~c~~ 186 (190)
T PRK04296 141 AICVHCGRKATMNQRLIDGGPAVYEGPQVLVGGNESYEAVCRKHYK 186 (190)
T ss_pred EEccccCCccceEEEEeCCCCccCCCCEEEECCcCcEEehhHHhhh
Confidence 4899999873332 23443 35555667899999994
No 164
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=28.38 E-value=60 Score=29.04 Aligned_cols=49 Identities=27% Similarity=0.575 Sum_probs=35.8
Q ss_pred CccccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcC-CCCCCChh
Q 001373 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGN-QACPQCKT 86 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~-~~CpqCkt 86 (1091)
...|..||-.|.-.+.+ +-.+|..||=-+=+=|+ .-||-+| -.||.|+-
T Consensus 7 ~~~CtSCg~~i~~~~~~-~~F~CPnCG~~~I~RC~-~CRk~~~~Y~CP~CGF 56 (59)
T PRK14890 7 PPKCTSCGIEIAPREKA-VKFLCPNCGEVIIYRCE-KCRKQSNPYTCPKCGF 56 (59)
T ss_pred CccccCCCCcccCCCcc-CEeeCCCCCCeeEeech-hHHhcCCceECCCCCC
Confidence 45899999998665555 45579999877445566 6678777 57999973
No 165
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=28.06 E-value=21 Score=31.22 Aligned_cols=16 Identities=31% Similarity=0.866 Sum_probs=12.9
Q ss_pred hhcCCCCCCChhhccc
Q 001373 75 REGNQACPQCKTRYKR 90 (1091)
Q Consensus 75 keG~~~CpqCkt~Ykr 90 (1091)
+|---+||.|+++|-|
T Consensus 18 ~dDiVvCp~CgapyHR 33 (54)
T PF14446_consen 18 GDDIVVCPECGAPYHR 33 (54)
T ss_pred CCCEEECCCCCCcccH
Confidence 4445789999999977
No 166
>COG4393 Predicted membrane protein [Function unknown]
Probab=28.05 E-value=1.1e+03 Score=28.15 Aligned_cols=23 Identities=22% Similarity=0.314 Sum_probs=15.2
Q ss_pred CCcchhHHHHHHHHHHHHHhhee
Q 001373 1048 DRLPTILLVWAILLASIFSLLWA 1070 (1091)
Q Consensus 1048 ~r~P~~v~~~s~~la~~f~~l~v 1070 (1091)
|+.-.-..+-+.++|++|+++|-
T Consensus 196 n~~~f~iyi~~~ilaiifl~flf 218 (405)
T COG4393 196 NKSTFYIYILFTILAIIFLLFLF 218 (405)
T ss_pred cccchHHHHHHHHHHHHHHHHHh
Confidence 44444455566788888888664
No 167
>PRK15103 paraquat-inducible membrane protein A; Provisional
Probab=27.97 E-value=29 Score=41.75 Aligned_cols=33 Identities=30% Similarity=0.662 Sum_probs=22.9
Q ss_pred ccCCCCCCCcchhhHHHHHhhc-CCCCCCChhhccccc
Q 001373 56 VACNECAFPVCRPCYEYERREG-NQACPQCKTRYKRIK 92 (1091)
Q Consensus 56 vaC~eC~fpvCrpCyeyerkeG-~~~CpqCkt~Ykr~k 92 (1091)
++|++|+--+..|= .+.| ...||+|+++-.|++
T Consensus 11 ~~C~~Cd~l~~~~~----l~~g~~a~CpRCg~~L~~~~ 44 (419)
T PRK15103 11 ILCPQCDMLVALPR----LEHGQKAACPRCGTTLTVRW 44 (419)
T ss_pred ccCCCCCceeecCC----CCCCCeeECCCCCCCCcCCC
Confidence 78999998765431 1233 356999999987663
No 168
>TIGR00155 pqiA_fam integral membrane protein, PqiA family. This family consists of uncharacterized predicted integral membrane proteins found, so far, only in the Proteobacteria. Of two members in E. coli, one is induced by paraquat and is designated PqiA, paraquat-inducible protein A.
Probab=27.81 E-value=34 Score=41.02 Aligned_cols=35 Identities=29% Similarity=0.636 Sum_probs=22.9
Q ss_pred ccccCCCCCCCcchhhHHHHHhhc-CCCCCCChhhccccc
Q 001373 54 PFVACNECAFPVCRPCYEYERREG-NQACPQCKTRYKRIK 92 (1091)
Q Consensus 54 ~fvaC~eC~fpvCrpCyeyerkeG-~~~CpqCkt~Ykr~k 92 (1091)
..++|+||+--+=+| ..+.| .-.||+|++.-.|++
T Consensus 12 ~~~~C~~Cd~l~~~~----~l~~g~~a~CpRCg~~L~~~~ 47 (403)
T TIGR00155 12 KHILCSQCDMLVALP----RIESGQKAACPRCGTTLTVGW 47 (403)
T ss_pred CeeeCCCCCCccccc----CCCCCCeeECCCCCCCCcCCC
Confidence 367899998764333 12233 356999999986653
No 169
>PRK14503 mannosyl-3-phosphoglycerate synthase; Provisional
Probab=27.39 E-value=1.3e+02 Score=35.68 Aligned_cols=42 Identities=26% Similarity=0.234 Sum_probs=29.2
Q ss_pred CCCCcchhhHHHHHhhccccCCCEEEEecCCCCCCcHHHHHHHHH
Q 001373 547 DHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMC 591 (1091)
Q Consensus 547 ~hh~KAGalNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amc 591 (1091)
=.+.|+-.|=-.+-... +.+.+||-.+|||.|+| -++.|-+-
T Consensus 141 VR~GKgEGMiiG~lLAk-~~g~~YVGFiDADNyiP--GaV~EYvk 182 (393)
T PRK14503 141 VRSGKGEGMIIGLLLAK-ALGARYVGFVDADNYIP--GAVNEYVK 182 (393)
T ss_pred eecCcchHHHHHHHHHH-HhCCCeEeEeecccCCC--chHHHHHH
Confidence 34568888864333222 46899999999999985 56776543
No 170
>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7.0 [Transcription]
Probab=26.91 E-value=25 Score=31.26 Aligned_cols=28 Identities=32% Similarity=0.880 Sum_probs=20.7
Q ss_pred CccccccCccccccCCCCccccCCCCCCCc
Q 001373 36 GQICQICGDEIEITDNGEPFVACNECAFPV 65 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpv 65 (1091)
--+|.-||.+-.+. .|| .+.|.||||.|
T Consensus 20 iYiCgdC~~en~lk-~~D-~irCReCG~RI 47 (62)
T KOG3507|consen 20 IYICGDCGQENTLK-RGD-VIRCRECGYRI 47 (62)
T ss_pred EEEecccccccccc-CCC-cEehhhcchHH
Confidence 45899999885554 344 46899999976
No 171
>COG4391 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.89 E-value=22 Score=31.82 Aligned_cols=17 Identities=47% Similarity=1.036 Sum_probs=14.4
Q ss_pred HhhcCCCCCCChhhccc
Q 001373 74 RREGNQACPQCKTRYKR 90 (1091)
Q Consensus 74 rkeG~~~CpqCkt~Ykr 90 (1091)
-++|.-.||=|.|+||-
T Consensus 44 g~~gev~CPYC~t~y~l 60 (62)
T COG4391 44 GDEGEVVCPYCSTRYRL 60 (62)
T ss_pred CCCCcEecCccccEEEe
Confidence 36888999999999974
No 172
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=26.16 E-value=40 Score=29.55 Aligned_cols=12 Identities=50% Similarity=1.013 Sum_probs=10.0
Q ss_pred cccccCcccccc
Q 001373 38 ICQICGDEIEIT 49 (1091)
Q Consensus 38 ~C~iCgd~vg~~ 49 (1091)
.|..||.+|.+.
T Consensus 4 ~CP~CG~~iev~ 15 (54)
T TIGR01206 4 ECPDCGAEIELE 15 (54)
T ss_pred CCCCCCCEEecC
Confidence 788999988775
No 173
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=25.80 E-value=34 Score=38.93 Aligned_cols=22 Identities=32% Similarity=0.986 Sum_probs=17.2
Q ss_pred ccCCccccccCccccccCCCCccccCCCCC
Q 001373 33 ELSGQICQICGDEIEITDNGEPFVACNECA 62 (1091)
Q Consensus 33 ~~~~~~C~iCgd~vg~~~~Ge~fvaC~eC~ 62 (1091)
...+..|.-||+- -|++|-.|+
T Consensus 226 ~~~~~~C~~CGg~--------rFlpC~~C~ 247 (281)
T KOG2824|consen 226 CEGGGVCESCGGA--------RFLPCSNCH 247 (281)
T ss_pred CCCCCcCCCcCCc--------ceEecCCCC
Confidence 4566899999854 789998884
No 174
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=25.80 E-value=29 Score=42.69 Aligned_cols=52 Identities=23% Similarity=0.600 Sum_probs=34.1
Q ss_pred ccCCCC-ccccCCCCCCC-cchhhH---HHHHhhcCCCCCCChhhcccccCCCCCCC
Q 001373 48 ITDNGE-PFVACNECAFP-VCRPCY---EYERREGNQACPQCKTRYKRIKGSPRVDG 99 (1091)
Q Consensus 48 ~~~~Ge-~fvaC~eC~fp-vCrpCy---eyerkeG~~~CpqCkt~Ykr~kgsprv~g 99 (1091)
++-.|- +++.|.+|+.. .|.-|= .|-++++.-.|..|+..++-..-||.=.+
T Consensus 205 lnrrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s 261 (505)
T TIGR00595 205 LNRRGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGS 261 (505)
T ss_pred EeCCcCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCC
Confidence 345565 57888888775 477774 33355666678888877777777775433
No 175
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=25.75 E-value=34 Score=27.43 Aligned_cols=23 Identities=30% Similarity=0.852 Sum_probs=17.9
Q ss_pred ccccCccccccCCCCccccCCCCCC
Q 001373 39 CQICGDEIEITDNGEPFVACNECAF 63 (1091)
Q Consensus 39 C~iCgd~vg~~~~Ge~fvaC~eC~f 63 (1091)
|.+||.......||-. -|.+|+-
T Consensus 11 C~~C~~~~~~~~dG~~--yC~~cG~ 33 (36)
T PF11781_consen 11 CPVCGSRWFYSDDGFY--YCDRCGH 33 (36)
T ss_pred CCCCCCeEeEccCCEE--EhhhCce
Confidence 9999999888888864 4777764
No 176
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=25.46 E-value=18 Score=36.92 Aligned_cols=11 Identities=36% Similarity=0.987 Sum_probs=8.3
Q ss_pred cCCCCCCChhh
Q 001373 77 GNQACPQCKTR 87 (1091)
Q Consensus 77 G~~~CpqCkt~ 87 (1091)
..-.||+|+.+
T Consensus 106 ~~~~CP~Cgs~ 116 (135)
T PRK03824 106 AFLKCPKCGSR 116 (135)
T ss_pred cCcCCcCCCCC
Confidence 44569999976
No 177
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=25.43 E-value=15 Score=26.62 Aligned_cols=13 Identities=31% Similarity=0.869 Sum_probs=6.1
Q ss_pred hhcCCCCCCChhh
Q 001373 75 REGNQACPQCKTR 87 (1091)
Q Consensus 75 keG~~~CpqCkt~ 87 (1091)
.++.+-||+|+++
T Consensus 10 ~~~~~fC~~CG~~ 22 (23)
T PF13240_consen 10 EDDAKFCPNCGTP 22 (23)
T ss_pred CCcCcchhhhCCc
Confidence 3444445555443
No 178
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=25.26 E-value=16 Score=26.95 Aligned_cols=14 Identities=21% Similarity=0.698 Sum_probs=9.7
Q ss_pred HhhcCCCCCCChhh
Q 001373 74 RREGNQACPQCKTR 87 (1091)
Q Consensus 74 rkeG~~~CpqCkt~ 87 (1091)
..++...||.|+++
T Consensus 12 ~~~~~~fC~~CG~~ 25 (26)
T PF13248_consen 12 IDPDAKFCPNCGAK 25 (26)
T ss_pred CCcccccChhhCCC
Confidence 36667777777765
No 179
>PRK06319 DNA topoisomerase I/SWI domain fusion protein; Validated
Probab=25.15 E-value=34 Score=44.82 Aligned_cols=56 Identities=23% Similarity=0.468 Sum_probs=32.3
Q ss_pred CCccccccCccccc---cCCCCccccCCCCCCCcchhhHHHHH-----------hhcCCCCCCChhhcccccC
Q 001373 35 SGQICQICGDEIEI---TDNGEPFVACNECAFPVCRPCYEYER-----------REGNQACPQCKTRYKRIKG 93 (1091)
Q Consensus 35 ~~~~C~iCgd~vg~---~~~Ge~fvaC~eC~fpvCrpCyeyer-----------keG~~~CpqCkt~Ykr~kg 93 (1091)
....|..||..-.+ ...| .|++|. +||-|+-=...++ ......||.|+......+|
T Consensus 591 ~~~~CP~Cg~~~L~~k~gr~G-~Fl~Cs--~yP~C~~t~~~~~~~~~~~~~~~~~~~~~~CP~Cg~~m~lK~g 660 (860)
T PRK06319 591 TEIDCPKCHKGKLVKIWAKNR-YFYGCS--EYPECDYKTSEEELTFNKEDYAEDTPWDSPCPLCGGEMKVRHG 660 (860)
T ss_pred cCcccCCCCCcceeEEecCCC-ceeecc--CCccccccCCcccccccccccccccccCCcCccCCCeeEEecC
Confidence 45689999864222 2345 699994 5777642111111 1225689999876655443
No 180
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=24.58 E-value=26 Score=27.20 Aligned_cols=24 Identities=42% Similarity=1.068 Sum_probs=11.7
Q ss_pred cccccCccccccCCCCccccCCCCCC
Q 001373 38 ICQICGDEIEITDNGEPFVACNECAF 63 (1091)
Q Consensus 38 ~C~iCgd~vg~~~~Ge~fvaC~eC~f 63 (1091)
.|..|+.+-.. +||..|| |.+|++
T Consensus 4 ~Cp~C~se~~y-~D~~~~v-Cp~C~~ 27 (30)
T PF08274_consen 4 KCPLCGSEYTY-EDGELLV-CPECGH 27 (30)
T ss_dssp --TTT-----E-E-SSSEE-ETTTTE
T ss_pred CCCCCCCccee-ccCCEEe-CCcccc
Confidence 57888887555 6777766 878875
No 181
>KOG2857 consensus Predicted MYND Zn-finger protein/hormone receptor interactor [Transcription]
Probab=24.20 E-value=39 Score=35.01 Aligned_cols=45 Identities=29% Similarity=0.745 Sum_probs=32.9
Q ss_pred CccccccCccccccCCCCccccCCCCCCCcch-hhHHHHHhhcCCCCCCChhhccccc
Q 001373 36 GQICQICGDEIEITDNGEPFVACNECAFPVCR-PCYEYERREGNQACPQCKTRYKRIK 92 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCr-pCyeyerkeG~~~CpqCkt~Ykr~k 92 (1091)
.++|-||-..+ .-.-|.-|.||-|. +||.-- +.=|||+|+=+..+
T Consensus 5 t~tC~ic~e~~-------~KYKCpkC~vPYCSl~CfKiH-----k~tPq~~~ve~~~t 50 (157)
T KOG2857|consen 5 TTTCVICLESE-------IKYKCPKCSVPYCSLPCFKIH-----KSTPQCETVEDNNT 50 (157)
T ss_pred eeeehhhhcch-------hhccCCCCCCccccchhhhhc-----cCCccccccCCccc
Confidence 46888887753 23669999999996 899543 33799998876554
No 182
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=24.20 E-value=86 Score=26.62 Aligned_cols=45 Identities=36% Similarity=0.710 Sum_probs=28.7
Q ss_pred cccccCccccccCCCCccccCCCCCC---CcchhhHHHHHh-hcCCCCCCCh
Q 001373 38 ICQICGDEIEITDNGEPFVACNECAF---PVCRPCYEYERR-EGNQACPQCK 85 (1091)
Q Consensus 38 ~C~iCgd~vg~~~~Ge~fvaC~eC~f---pvCrpCyeyerk-eG~~~CpqCk 85 (1091)
+|.||-+ +-+++..++.+| .|.- -|=+.|.+.=.. .++..||.|+
T Consensus 1 ~CrIC~~--~~~~~~~l~~PC-~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHD--EGDEGDPLVSPC-RCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCC--CCCCCCeeEecc-ccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 5899987 334445567788 4543 144567765544 4467899996
No 183
>PF09526 DUF2387: Probable metal-binding protein (DUF2387); InterPro: IPR012658 Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various proteobacteria.
Probab=24.07 E-value=41 Score=31.01 Aligned_cols=31 Identities=32% Similarity=0.927 Sum_probs=24.3
Q ss_pred cCCccccccCc--cccc-cCCCCccccCCCCCCC
Q 001373 34 LSGQICQICGD--EIEI-TDNGEPFVACNECAFP 64 (1091)
Q Consensus 34 ~~~~~C~iCgd--~vg~-~~~Ge~fvaC~eC~fp 64 (1091)
..|-+|.-|+. .|.+ .+||...+-|-+|+|-
T Consensus 6 IAGa~CP~C~~~D~i~~~~e~~ve~vECV~CGy~ 39 (71)
T PF09526_consen 6 IAGAVCPKCQAMDTIMMWRENGVEYVECVECGYT 39 (71)
T ss_pred ecCccCCCCcCccEEEEEEeCCceEEEecCCCCe
Confidence 35778999984 4544 6889999999999984
No 184
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=24.02 E-value=31 Score=27.59 Aligned_cols=11 Identities=45% Similarity=1.404 Sum_probs=9.6
Q ss_pred CCCCChhhccc
Q 001373 80 ACPQCKTRYKR 90 (1091)
Q Consensus 80 ~CpqCkt~Ykr 90 (1091)
.||.|++.|+-
T Consensus 4 ~CP~C~~~f~v 14 (37)
T PF13719_consen 4 TCPNCQTRFRV 14 (37)
T ss_pred ECCCCCceEEc
Confidence 59999999964
No 185
>PF13896 Glyco_transf_49: Glycosyl-transferase for dystroglycan
Probab=23.92 E-value=83 Score=36.48 Aligned_cols=39 Identities=15% Similarity=0.292 Sum_probs=27.0
Q ss_pred cCCCEEEEecCCCCCCcHHHHHHHHHhhcCCCCCcceEEE
Q 001373 566 SNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYV 605 (1091)
Q Consensus 566 tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~va~V 605 (1091)
+..+||+++|.|++ |.+++-+....+..--....+.+||
T Consensus 126 a~T~~v~~~DvD~~-ps~~l~~~l~~~~~~~~~~~~~a~V 164 (317)
T PF13896_consen 126 ARTDYVFLLDVDFL-PSPGLYEKLLRFARRNIDKSKTAFV 164 (317)
T ss_pred cCcceEEEecceee-eCcchHHHHHHHhhhhccCCceEEE
Confidence 57799999999997 7777666666555332233466666
No 186
>TIGR02556 cas_TM1802 CRISPR-associated protein, TM1802 family. This minor cas protein is found in CRISPR/cas regions of at least five prokaryotic genomes: Methanosarcina mazei, Sulfurihydrogenibium azorense, Thermotoga maritima, Carboxydothermus hydrogenoformans, and Dictyoglomus thermophilum, the first of which is archaeal while the rest are bacterial.
Probab=23.77 E-value=48 Score=41.40 Aligned_cols=41 Identities=29% Similarity=0.662 Sum_probs=24.8
Q ss_pred CccccccCccccccCC----------CCcccc--CCCCCCCcchhhHHHHHhhc
Q 001373 36 GQICQICGDEIEITDN----------GEPFVA--CNECAFPVCRPCYEYERREG 77 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~----------Ge~fva--C~eC~fpvCrpCyeyerkeG 77 (1091)
+.+|.|||.+--++.+ =.-|++ =.-=.||||+.||.+ ...|
T Consensus 170 ~g~C~iCg~~~~~v~~~~~fKfyT~DK~gf~sgk~~~knfpIC~eC~~~-l~~G 222 (555)
T TIGR02556 170 SGTCHLCGERSDITYDSFVYKFYTTDKPGFSSDKGFSKNFSICRDCYKD-VIYG 222 (555)
T ss_pred ceEEeccCCCCceeccceeeeeeecCCCcccCCccccccCchhHHHHHH-HHHH
Confidence 5799999997332221 112333 122379999999944 4555
No 187
>COG1499 NMD3 NMD protein affecting ribosome stability and mRNA decay [Translation, ribosomal structure and biogenesis]
Probab=23.74 E-value=41 Score=39.76 Aligned_cols=49 Identities=27% Similarity=0.612 Sum_probs=29.2
Q ss_pred cCCccccccCccccccCCCCccccCCCCCCCcchhhHHHHHh------hc--CCCCCCChhhcccccCCCCCC
Q 001373 34 LSGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERR------EG--NQACPQCKTRYKRIKGSPRVD 98 (1091)
Q Consensus 34 ~~~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerk------eG--~~~CpqCkt~Ykr~kgsprv~ 98 (1091)
.+...|--||..+-...+| +|..|| .|+. ++ --.|++|+..+ .|.+.++
T Consensus 4 ~~~~~C~~CGr~~~~~~~~------------lC~dC~-~~~~~~~~ip~~~~v~~C~~Cga~~---~~~~W~~ 60 (355)
T COG1499 4 ASTILCVRCGRSVDPLIDG------------LCGDCY-VETTPLIEIPDEVNVEVCRHCGAYR---IRGRWVD 60 (355)
T ss_pred CcccEeccCCCcCchhhcc------------ccHHHH-hccCccccCCCceEEEECCcCCCcc---CCCccee
Confidence 4556788888776533333 599999 4422 11 15799999333 3444554
No 188
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=23.64 E-value=45 Score=37.59 Aligned_cols=58 Identities=29% Similarity=0.572 Sum_probs=44.1
Q ss_pred CccccccCccccccCCCCccccCCCCC-CCc--chhhHHHHHh-hcCCCCCCChhhcccccCC
Q 001373 36 GQICQICGDEIEITDNGEPFVACNECA-FPV--CRPCYEYERR-EGNQACPQCKTRYKRIKGS 94 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~-fpv--CrpCyeyerk-eG~~~CpqCkt~Ykr~kgs 94 (1091)
+..|.||.++........+-++| .|. -+. =|.|.+-..+ -|+-.|..|+..|.+....
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC-~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~~~~ 139 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPC-SCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINVGTK 139 (323)
T ss_pred CCcEEEEecccccccccccccCc-cccCcHHHHHHHHHHhhhccccCeeeecccccceeccee
Confidence 46899999987665444778999 672 222 4889988877 5779999999999887544
No 189
>PTZ00293 thymidine kinase; Provisional
Probab=23.39 E-value=35 Score=37.57 Aligned_cols=35 Identities=20% Similarity=0.697 Sum_probs=22.4
Q ss_pred ccccccCccccc----cCCCCc-cccCCCCCCCcchhhHH
Q 001373 37 QICQICGDEIEI----TDNGEP-FVACNECAFPVCRPCYE 71 (1091)
Q Consensus 37 ~~C~iCgd~vg~----~~~Ge~-fvaC~eC~fpvCrpCye 71 (1091)
.+|..||.+--. .++|+. .+-=+|=--|+||.||+
T Consensus 138 aiC~~CG~~A~~t~R~~~~~~~v~IGg~e~Y~a~CR~c~~ 177 (211)
T PTZ00293 138 AVCMFCGKEASFSKRIVQSEQIELIGGEDKYIATCRKCFR 177 (211)
T ss_pred eEchhhCCcceeEEEEcCCCCEEEECCcccEEehhhhhhh
Confidence 599999988433 233443 23333445789999995
No 190
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=23.22 E-value=33 Score=27.41 Aligned_cols=11 Identities=36% Similarity=1.310 Sum_probs=9.3
Q ss_pred CCCCChhhccc
Q 001373 80 ACPQCKTRYKR 90 (1091)
Q Consensus 80 ~CpqCkt~Ykr 90 (1091)
.||+|+++|.-
T Consensus 4 ~Cp~C~~~y~i 14 (36)
T PF13717_consen 4 TCPNCQAKYEI 14 (36)
T ss_pred ECCCCCCEEeC
Confidence 59999999953
No 191
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.15 E-value=42 Score=36.01 Aligned_cols=42 Identities=26% Similarity=0.687 Sum_probs=35.0
Q ss_pred CccccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCCh
Q 001373 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCK 85 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCk 85 (1091)
--.|.||-+..--. ....|+--.|+.|-+.-.. +.-.||.|+
T Consensus 13 ~~~C~iC~~~~~~p-------~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr 54 (386)
T KOG2177|consen 13 ELTCPICLEYFREP-------VLLPCGHNFCRACLTRSWE-GPLSCPVCR 54 (386)
T ss_pred cccChhhHHHhhcC-------ccccccchHhHHHHHHhcC-CCcCCcccC
Confidence 44899998885443 5667899999999988877 889999999
No 192
>PRK08359 transcription factor; Validated
Probab=22.86 E-value=25 Score=37.61 Aligned_cols=30 Identities=43% Similarity=0.979 Sum_probs=19.6
Q ss_pred ccccccCcccccc-----CCCCccccCCCCCCCcchhhH-HHHH
Q 001373 37 QICQICGDEIEIT-----DNGEPFVACNECAFPVCRPCY-EYER 74 (1091)
Q Consensus 37 ~~C~iCgd~vg~~-----~~Ge~fvaC~eC~fpvCrpCy-eyer 74 (1091)
..|.|||.+|--. .+|-. .-||..|| .|-.
T Consensus 7 ~~CEiCG~~i~g~~~~v~ieGae--------l~VC~~Ca~k~G~ 42 (176)
T PRK08359 7 RYCEICGAEIRGPGHRIRIEGAE--------LLVCDRCYEKYGR 42 (176)
T ss_pred ceeecCCCccCCCCeEEEEcCeE--------EehHHHHHHHhCC
Confidence 4599999997422 34543 34778888 6644
No 193
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=22.11 E-value=39 Score=45.49 Aligned_cols=48 Identities=25% Similarity=0.645 Sum_probs=30.2
Q ss_pred ccccccCccccccCCCCccccCCCCCCCc-----chhhHHHHH--hhcCCCCCCChhhcccc
Q 001373 37 QICQICGDEIEITDNGEPFVACNECAFPV-----CRPCYEYER--REGNQACPQCKTRYKRI 91 (1091)
Q Consensus 37 ~~C~iCgd~vg~~~~Ge~fvaC~eC~fpv-----CrpCyeyer--keG~~~CpqCkt~Ykr~ 91 (1091)
..|.-||..+-. .-|.+|+-+. |..|=-.-- ..|..-||.|+++-...
T Consensus 668 rkCPkCG~~t~~-------~fCP~CGs~te~vy~CPsCGaev~~des~a~~CP~CGtplv~~ 722 (1337)
T PRK14714 668 RRCPSCGTETYE-------NRCPDCGTHTEPVYVCPDCGAEVPPDESGRVECPRCDVELTPY 722 (1337)
T ss_pred EECCCCCCcccc-------ccCcccCCcCCCceeCccCCCccCCCccccccCCCCCCccccc
Confidence 478888886421 2688888664 777753111 12355799999876544
No 194
>cd02336 ZZ_RSC8 Zinc finger, ZZ type. Zinc finger present in RSC8 and related proteins. RSC8 is a component of the RSC complex, which is closely related to the SWI/SNF complex and is involved in remodeling chromatin structure. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=22.09 E-value=46 Score=28.02 Aligned_cols=34 Identities=21% Similarity=0.499 Sum_probs=25.0
Q ss_pred cccccCccccccCCCCccccCCCCC-CCcchhhHHHHHhh
Q 001373 38 ICQICGDEIEITDNGEPFVACNECA-FPVCRPCYEYERRE 76 (1091)
Q Consensus 38 ~C~iCgd~vg~~~~Ge~fvaC~eC~-fpvCrpCyeyerke 76 (1091)
.|.+||-++.. +..-|-.++ +-+|.+||+-.|--
T Consensus 2 ~C~~Cg~D~t~-----vryh~~~~~~~dLC~~CF~~G~f~ 36 (45)
T cd02336 2 HCFTCGNDCTR-----VRYHNLKAKKYDLCPSCYQEGRFP 36 (45)
T ss_pred cccCCCCccCc-----eEEEecCCCccccChHHHhCcCCC
Confidence 69999999742 556666675 99999999654433
No 195
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=21.80 E-value=44 Score=42.96 Aligned_cols=58 Identities=31% Similarity=0.783 Sum_probs=42.3
Q ss_pred cCCccccccCccccccCC---CCccccCCCCC--------------------CCcchhhHH-HH----Hhh--cCCCCCC
Q 001373 34 LSGQICQICGDEIEITDN---GEPFVACNECA--------------------FPVCRPCYE-YE----RRE--GNQACPQ 83 (1091)
Q Consensus 34 ~~~~~C~iCgd~vg~~~~---Ge~fvaC~eC~--------------------fpvCrpCye-ye----rke--G~~~Cpq 83 (1091)
..-.+|.-|-+++---.| +=+|.-|..|| |+.|..|.. |+ |+- ---+||.
T Consensus 66 pD~a~C~~Cl~E~~dp~~Rry~YpF~nCt~CGPr~~i~~~lpydr~~t~m~~f~~C~~C~~ey~~p~~rr~h~~~~~C~~ 145 (711)
T TIGR00143 66 ADVATCSDCLEEMLDKNDRRYLYPFISCTHCGPRFTIIEALPYDRENTSMADFPLCPDCAKEYKDPLDRRFHAQPIACPR 145 (711)
T ss_pred CchhhHHHHHHHhcCCCcccccCCcccccCCCCCeEEeecCCCCCCCcCCCCCcCCHHHHHHhcCCccccCCCCCccCCC
Confidence 456699999999833222 55899999994 999999984 32 332 2358999
Q ss_pred Chhhcccc
Q 001373 84 CKTRYKRI 91 (1091)
Q Consensus 84 Ckt~Ykr~ 91 (1091)
|+=|+.-.
T Consensus 146 Cgp~l~l~ 153 (711)
T TIGR00143 146 CGPQLNFV 153 (711)
T ss_pred CCcEEEEE
Confidence 99988653
No 196
>PF04641 Rtf2: Rtf2 RING-finger
Probab=21.65 E-value=61 Score=36.49 Aligned_cols=51 Identities=24% Similarity=0.544 Sum_probs=37.8
Q ss_pred cCCccccccCccccccCCCC-ccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhccc
Q 001373 34 LSGQICQICGDEIEITDNGE-PFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (1091)
Q Consensus 34 ~~~~~C~iCgd~vg~~~~Ge-~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Ykr 90 (1091)
...-+|.|++.+. +|- -||+=--||=-+|..|.+-- + .+..||.|.++|.+
T Consensus 111 ~~~~~CPvt~~~~----~~~~~fv~l~~cG~V~s~~alke~-k-~~~~Cp~c~~~f~~ 162 (260)
T PF04641_consen 111 EGRFICPVTGKEF----NGKHKFVYLRPCGCVFSEKALKEL-K-KSKKCPVCGKPFTE 162 (260)
T ss_pred CceeECCCCCccc----CCceeEEEEcCCCCEeeHHHHHhh-c-ccccccccCCcccc
Confidence 3444999998776 444 58887788878888888444 4 45679999999964
No 197
>KOG2568 consensus Predicted membrane protein [Function unknown]
Probab=21.50 E-value=1.7e+03 Score=28.08 Aligned_cols=71 Identities=23% Similarity=0.309 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHhcCcccchh---------hHHHHHHHHHHHHHHHHHHHHhhcCCC-------CcchhHHHHHHH
Q 001373 997 LVFNLIGVIIGVADAISNGYETWGP---------LFGKLFFSLWVILHLYPFLKGFLGKQD-------RLPTILLVWAIL 1060 (1091)
Q Consensus 997 lilnlvaiv~gi~r~i~~g~~~wg~---------l~g~lf~~~Wvvv~l~Pfl~gL~gR~~-------r~P~~v~~~s~~ 1060 (1091)
+++.+++-+.++.+.+.+....-+. .+...++..|++.-|---++.|-.|++ |.=++++..|++
T Consensus 314 ~~~~i~s~i~~l~~~~g~~se~~~~~~lf~~ip~ai~d~~f~~wIF~SL~~Tlk~Lr~rRn~vKl~lYr~F~n~l~~~Vv 393 (518)
T KOG2568|consen 314 VIYFIASEILGLARVIGNISELSSLLILFAALPLAILDAAFIYWIFISLAKTLKKLRLRRNIVKLSLYRKFTNTLAFSVV 393 (518)
T ss_pred HHHHHHHHHHHHHHHhcCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666666665322221121 122346666777777777788877765 556677777666
Q ss_pred HHHHHHh
Q 001373 1061 LASIFSL 1067 (1091)
Q Consensus 1061 la~~f~~ 1067 (1091)
..+.|++
T Consensus 394 as~~~i~ 400 (518)
T KOG2568|consen 394 ASFAFIL 400 (518)
T ss_pred HHHHHHH
Confidence 6555544
No 198
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=21.41 E-value=50 Score=25.16 Aligned_cols=28 Identities=36% Similarity=0.960 Sum_probs=20.9
Q ss_pred cccccCccccccCCCCccccCCCCCCCcchhh
Q 001373 38 ICQICGDEIEITDNGEPFVACNECAFPVCRPC 69 (1091)
Q Consensus 38 ~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpC 69 (1091)
.|.+|+.++- |..|--|.+|.|-+..-|
T Consensus 2 ~C~~C~~~~~----~~~~Y~C~~c~f~lh~~C 29 (30)
T PF03107_consen 2 WCDVCRRKID----GFYFYHCSECCFTLHVRC 29 (30)
T ss_pred CCCCCCCCcC----CCEeEEeCCCCCeEcCcc
Confidence 5889977643 333889999999887655
No 199
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=21.14 E-value=32 Score=35.70 Aligned_cols=43 Identities=35% Similarity=0.858 Sum_probs=25.3
Q ss_pred CCccccccCccccccCCCCccccCCCCCCCcchhhHHHH-HhhcCCCCCCChh
Q 001373 35 SGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYE-RREGNQACPQCKT 86 (1091)
Q Consensus 35 ~~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeye-rkeG~~~CpqCkt 86 (1091)
.+..|..||+ .-||+|.+|.= -|+-=.+.. ...+-..||.|++
T Consensus 98 ~~~~C~~Cgg--------~rfv~C~~C~G-s~k~~~~~~~~~~~~~rC~~Cne 141 (147)
T cd03031 98 GGGVCEGCGG--------ARFVPCSECNG-SCKVFAENATAAGGFLRCPECNE 141 (147)
T ss_pred CCCCCCCCCC--------cCeEECCCCCC-cceEEeccCcccccEEECCCCCc
Confidence 4557888984 47999988841 122211110 1234478999986
No 200
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=21.02 E-value=80 Score=28.35 Aligned_cols=48 Identities=31% Similarity=0.703 Sum_probs=33.9
Q ss_pred CccccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcC-CCCCCCh
Q 001373 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGN-QACPQCK 85 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~-~~CpqCk 85 (1091)
..+|-.||-.|-..+.+-.| +|..||=-+-.-|- --||-|| -.||.|+
T Consensus 9 ~~~CtSCg~~i~p~e~~v~F-~CPnCGe~~I~Rc~-~CRk~g~~Y~Cp~CG 57 (61)
T COG2888 9 PPVCTSCGREIAPGETAVKF-PCPNCGEVEIYRCA-KCRKLGNPYRCPKCG 57 (61)
T ss_pred CceeccCCCEeccCCceeEe-eCCCCCceeeehhh-hHHHcCCceECCCcC
Confidence 34899999998887777665 69999943333333 3367776 5799886
No 201
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=20.75 E-value=70 Score=23.77 Aligned_cols=24 Identities=38% Similarity=1.049 Sum_probs=12.3
Q ss_pred ccccCccccccCCCCccccCCCCCC
Q 001373 39 CQICGDEIEITDNGEPFVACNECAF 63 (1091)
Q Consensus 39 C~iCgd~vg~~~~Ge~fvaC~eC~f 63 (1091)
|..||-.|--.+.|-.| .|..|||
T Consensus 1 C~sC~~~i~~r~~~v~f-~CPnCG~ 24 (24)
T PF07754_consen 1 CTSCGRPIAPREQAVPF-PCPNCGF 24 (24)
T ss_pred CccCCCcccCcccCceE-eCCCCCC
Confidence 45566554433334443 4666665
No 202
>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]
Probab=20.15 E-value=33 Score=33.05 Aligned_cols=10 Identities=40% Similarity=1.361 Sum_probs=7.9
Q ss_pred CCCCCChhhc
Q 001373 79 QACPQCKTRY 88 (1091)
Q Consensus 79 ~~CpqCkt~Y 88 (1091)
--||.||...
T Consensus 77 SRCP~CKSE~ 86 (97)
T COG3357 77 SRCPKCKSEW 86 (97)
T ss_pred ccCCcchhhc
Confidence 5799999754
No 203
>TIGR03830 CxxCG_CxxCG_HTH putative zinc finger/helix-turn-helix protein, YgiT family. This model describes a family of predicted regulatory proteins with a conserved zinc finger/HTH architecture. The amino-terminal region contains a novel domain, featuring two CXXC motifs and occuring in a number of small bacterial proteins as well as in the present family. The carboxyl-terminal region consists of a helix-turn-helix domain, modeled by pfam01381. The predicted function is DNA binding and transcriptional regulation.
Probab=20.05 E-value=33 Score=33.56 Aligned_cols=40 Identities=25% Similarity=0.622 Sum_probs=25.5
Q ss_pred ccccCccccc-cCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhc
Q 001373 39 CQICGDEIEI-TDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRY 88 (1091)
Q Consensus 39 C~iCgd~vg~-~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Y 88 (1091)
|.+||...+. ...-+.|.=+ .+.+.|..|++ .||+|++.|
T Consensus 1 C~~C~~~~~~~~~~~~~~~~~-G~~~~v~~~~~---------~C~~CGe~~ 41 (127)
T TIGR03830 1 CPICGSGELVRDVKDEPYTYK-GESITIGVPGW---------YCPACGEEL 41 (127)
T ss_pred CCCCCCccceeeeecceEEEc-CEEEEEeeeee---------ECCCCCCEE
Confidence 8899965443 3344445455 35555555655 599999987
No 204
>PF12773 DZR: Double zinc ribbon
Probab=20.02 E-value=63 Score=26.88 Aligned_cols=12 Identities=25% Similarity=0.888 Sum_probs=7.4
Q ss_pred CccccccCcccc
Q 001373 36 GQICQICGDEIE 47 (1091)
Q Consensus 36 ~~~C~iCgd~vg 47 (1091)
...|..||-.+.
T Consensus 12 ~~fC~~CG~~l~ 23 (50)
T PF12773_consen 12 AKFCPHCGTPLP 23 (50)
T ss_pred ccCChhhcCChh
Confidence 446666666655
No 205
>PRK06393 rpoE DNA-directed RNA polymerase subunit E''; Validated
Probab=20.01 E-value=49 Score=30.04 Aligned_cols=23 Identities=22% Similarity=0.592 Sum_probs=16.9
Q ss_pred ccccCCCCCCCcchhhHHHHHhhcCCCCCCChhh
Q 001373 54 PFVACNECAFPVCRPCYEYERREGNQACPQCKTR 87 (1091)
Q Consensus 54 ~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~ 87 (1091)
.|.||.+|.+-+ ++ +.||-|+..
T Consensus 4 ~~~AC~~C~~i~----------~~-~~Cp~Cgs~ 26 (64)
T PRK06393 4 QYRACKKCKRLT----------PE-KTCPVHGDE 26 (64)
T ss_pred hhhhHhhCCccc----------CC-CcCCCCCCC
Confidence 467888887766 23 599999874
No 206
>COG4416 Com Mu-like prophage protein Com [General function prediction only]
Probab=20.00 E-value=61 Score=28.47 Aligned_cols=22 Identities=32% Similarity=0.813 Sum_probs=15.3
Q ss_pred chhhHHHHHhhcCC-----CCCCChhh
Q 001373 66 CRPCYEYERREGNQ-----ACPQCKTR 87 (1091)
Q Consensus 66 CrpCyeyerkeG~~-----~CpqCkt~ 87 (1091)
|+-|-..-.+-+.| .||+||+-
T Consensus 7 C~~CnKlLa~a~~~~yle~KCPrCK~v 33 (60)
T COG4416 7 CAKCNKLLAEAEGQAYLEKKCPRCKEV 33 (60)
T ss_pred hHHHhHHHHhcccceeeeecCCcccee
Confidence 77777665454444 79999975
Done!