Query 001373
Match_columns 1091
No_of_seqs 417 out of 1860
Neff 5.1
Searched_HMMs 29240
Date Tue Mar 26 00:49:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001373.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001373hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hg6_A Cellulose synthase subu 100.0 2.9E-50 9.8E-55 496.6 48.3 492 288-1044 65-571 (802)
2 1weo_A Cellulose synthase, cat 100.0 8.8E-46 3E-50 333.5 8.2 84 28-111 8-91 (93)
3 2z86_A Chondroitin synthase; G 99.5 3.5E-13 1.2E-17 160.9 18.1 129 362-615 89-218 (625)
4 1xhb_A Polypeptide N-acetylgal 99.4 3.9E-12 1.3E-16 147.0 18.5 116 362-596 25-143 (472)
5 2d7i_A Polypeptide N-acetylgal 99.4 3.5E-12 1.2E-16 152.1 16.3 115 363-596 109-224 (570)
6 1qg8_A Protein (spore coat pol 99.3 1.1E-12 3.7E-17 137.6 7.7 124 366-612 1-129 (255)
7 3bcv_A Putative glycosyltransf 99.3 5.5E-12 1.9E-16 130.8 12.9 110 364-596 3-112 (240)
8 2ffu_A Ppgalnact-2, polypeptid 99.3 8.9E-12 3.1E-16 145.5 14.7 113 362-596 62-174 (501)
9 2z86_A Chondroitin synthase; G 99.2 6.4E-11 2.2E-15 141.4 13.5 125 363-614 372-497 (625)
10 4fix_A UDP-galactofuranosyl tr 98.8 1.3E-08 4.6E-13 123.6 13.2 127 362-607 176-304 (657)
11 3ckj_A Putative uncharacterize 98.8 2.7E-08 9.3E-13 110.3 12.7 54 549-610 117-171 (329)
12 3l7i_A Teichoic acid biosynthe 98.8 8.2E-10 2.8E-14 135.0 0.0 111 365-596 1-111 (729)
13 2fy7_A Beta-1,4-galactosyltran 98.5 1.5E-07 5.3E-12 103.5 8.3 53 790-842 201-263 (287)
14 3f1y_A Mannosyl-3-phosphoglyce 97.9 4.4E-05 1.5E-09 87.3 11.8 51 549-607 165-216 (387)
15 2nxv_A ATP synthase subunits r 97.7 0.00043 1.5E-08 73.6 14.3 46 552-606 63-113 (249)
16 1e4u_A Transcriptional repress 96.6 0.0025 8.6E-08 57.1 5.7 53 36-91 11-63 (78)
17 1fo8_A Alpha-1,3-mannosyl-glyc 95.7 0.021 7.2E-07 64.5 8.6 44 365-413 1-44 (343)
18 2bo4_A Mannosylglycerate synth 93.9 0.2 6.8E-06 57.6 10.7 46 549-594 74-119 (397)
19 2zu9_A Mannosyl-3-phosphoglyce 91.5 0.5 1.7E-05 54.4 9.5 38 550-590 144-181 (394)
20 1vyx_A ORF K3, K3RING; zinc-bi 89.6 0.31 1.1E-05 41.4 4.3 50 35-89 5-58 (60)
21 2d8s_A Cellular modulator of i 88.3 0.75 2.5E-05 41.3 6.0 54 34-90 13-70 (80)
22 2ea6_A Ring finger protein 4; 87.4 0.46 1.6E-05 39.9 3.9 54 35-90 14-68 (69)
23 3ng2_A RNF4, snurf, ring finge 86.0 0.33 1.1E-05 41.2 2.2 55 34-90 8-63 (71)
24 2ecy_A TNF receptor-associated 85.7 0.49 1.7E-05 39.9 3.1 48 36-90 15-62 (66)
25 2wvl_A Mannosyl-3-phosphoglyce 85.6 1.9 6.6E-05 49.1 8.7 42 365-415 52-93 (391)
26 1g25_A CDK-activating kinase a 85.4 0.61 2.1E-05 39.2 3.6 54 36-91 3-56 (65)
27 2ect_A Ring finger protein 126 84.0 1.8 6.2E-05 37.5 6.1 53 34-91 13-65 (78)
28 1t1h_A Gspef-atpub14, armadill 83.8 0.53 1.8E-05 40.9 2.5 47 36-89 8-54 (78)
29 2xeu_A Ring finger protein 4; 83.5 0.35 1.2E-05 40.0 1.3 53 36-90 3-56 (64)
30 2ckl_B Ubiquitin ligase protei 83.3 0.63 2.1E-05 46.5 3.2 48 37-90 55-102 (165)
31 2csz_A Synaptotagmin-like prot 81.7 0.63 2.2E-05 41.8 2.2 60 10-73 1-60 (76)
32 1iym_A EL5; ring-H2 finger, ub 81.0 1.4 4.7E-05 35.5 3.9 49 36-88 5-53 (55)
33 2ysl_A Tripartite motif-contai 80.7 0.9 3.1E-05 38.8 2.8 48 36-90 20-69 (73)
34 2ecm_A Ring finger and CHY zin 80.7 1.3 4.6E-05 35.5 3.7 50 35-88 4-53 (55)
35 3fl2_A E3 ubiquitin-protein li 79.6 1.1 3.7E-05 42.6 3.3 47 37-90 53-99 (124)
36 1chc_A Equine herpes virus-1 r 79.6 1.8 6.2E-05 36.4 4.3 49 36-91 5-53 (68)
37 1v87_A Deltex protein 2; ring- 78.9 1.6 5.5E-05 40.6 4.2 59 35-93 24-97 (114)
38 2ct2_A Tripartite motif protei 76.9 2.1 7E-05 37.7 4.1 52 36-90 15-68 (88)
39 2f42_A STIP1 homology and U-bo 76.6 1.4 4.8E-05 45.5 3.3 47 36-89 106-152 (179)
40 2ecv_A Tripartite motif-contai 76.5 2.5 8.6E-05 36.6 4.5 48 36-90 19-71 (85)
41 2c2l_A CHIP, carboxy terminus 76.0 1.5 5.1E-05 46.5 3.4 48 35-89 207-254 (281)
42 2ecw_A Tripartite motif-contai 75.0 2.6 9E-05 36.5 4.2 48 36-90 19-71 (85)
43 2kiz_A E3 ubiquitin-protein li 74.0 3 0.0001 35.2 4.1 52 35-91 13-64 (69)
44 3lrq_A E3 ubiquitin-protein li 73.1 2.3 8E-05 39.0 3.5 48 36-89 22-69 (100)
45 2djb_A Polycomb group ring fin 72.7 5.9 0.0002 33.8 5.8 49 36-91 15-63 (72)
46 2ecn_A Ring finger protein 141 71.5 2 6.9E-05 36.3 2.5 48 35-91 14-61 (70)
47 3vk6_A E3 ubiquitin-protein li 69.5 1.8 6.3E-05 40.7 1.9 29 63-91 22-50 (101)
48 2gvi_A Conserved hypothetical 69.4 1.3 4.4E-05 46.5 0.9 29 34-72 170-202 (204)
49 3hct_A TNF receptor-associated 68.0 2.9 0.0001 39.4 3.0 47 37-90 19-65 (118)
50 2y43_A E3 ubiquitin-protein li 67.3 3.5 0.00012 37.4 3.3 48 36-90 22-69 (99)
51 2ep4_A Ring finger protein 24; 67.3 4.5 0.00015 34.5 3.8 51 36-91 15-65 (74)
52 2kr4_A Ubiquitin conjugation f 67.0 3.2 0.00011 37.2 2.9 46 36-89 14-59 (85)
53 2d8t_A Dactylidin, ring finger 66.1 4.3 0.00015 34.6 3.5 49 34-90 13-61 (71)
54 2yur_A Retinoblastoma-binding 66.0 7.3 0.00025 33.5 4.9 50 36-91 15-65 (74)
55 1z6u_A NP95-like ring finger p 64.8 3.9 0.00013 40.5 3.4 47 37-90 79-125 (150)
56 1x4j_A Ring finger protein 38; 64.7 3 0.0001 35.9 2.2 52 35-91 22-73 (75)
57 2zet_C Melanophilin; complex, 64.3 0.73 2.5E-05 46.5 -2.1 51 35-87 67-117 (153)
58 3l11_A E3 ubiquitin-protein li 64.1 1.5 5.2E-05 41.0 0.2 48 36-90 15-62 (115)
59 2kre_A Ubiquitin conjugation f 64.0 3 0.0001 38.7 2.2 46 36-89 29-74 (100)
60 1jm7_A BRCA1, breast cancer ty 63.3 5.6 0.00019 36.5 3.9 48 36-90 21-70 (112)
61 2l0b_A E3 ubiquitin-protein li 62.4 3.6 0.00012 37.1 2.4 49 35-88 39-87 (91)
62 2csy_A Zinc finger protein 183 62.4 8.8 0.0003 33.4 4.9 46 36-89 15-60 (81)
63 1zbd_B Rabphilin-3A; G protein 61.8 3.1 0.00011 41.0 1.9 37 33-72 52-89 (134)
64 2ysj_A Tripartite motif-contai 60.9 7.2 0.00025 32.2 3.8 42 36-84 20-63 (63)
65 2ecl_A Ring-box protein 2; RNF 60.9 5.3 0.00018 35.2 3.2 56 35-91 14-77 (81)
66 1rmd_A RAG1; V(D)J recombinati 60.0 5.8 0.0002 37.0 3.4 48 36-90 23-70 (116)
67 3hcs_A TNF receptor-associated 59.9 4.6 0.00016 40.3 2.9 47 37-90 19-65 (170)
68 3d00_A Tungsten formylmethanof 59.5 4.2 0.00014 42.3 2.5 26 34-71 161-186 (191)
69 3ztg_A E3 ubiquitin-protein li 58.2 5.9 0.0002 35.3 3.0 48 36-89 13-61 (92)
70 2ckl_A Polycomb group ring fin 58.1 5.3 0.00018 36.9 2.7 48 36-90 15-62 (108)
71 3vth_A Hydrogenase maturation 57.8 4.9 0.00017 49.9 3.1 58 34-91 109-196 (761)
72 4ap4_A E3 ubiquitin ligase RNF 57.3 3.8 0.00013 38.5 1.6 54 35-90 71-125 (133)
73 4ayc_A E3 ubiquitin-protein li 56.9 5.2 0.00018 38.7 2.6 45 38-90 55-99 (138)
74 1wgm_A Ubiquitin conjugation f 55.5 6.1 0.00021 36.5 2.7 46 36-89 22-68 (98)
75 2ct0_A Non-SMC element 1 homol 55.3 4.1 0.00014 36.2 1.4 47 37-89 16-63 (74)
76 3h0g_L DNA-directed RNA polyme 54.1 7.7 0.00026 33.7 2.8 30 34-65 19-48 (63)
77 1jm7_B BARD1, BRCA1-associated 53.2 5.7 0.00019 37.3 2.1 45 36-89 22-66 (117)
78 2egp_A Tripartite motif-contai 52.6 3.5 0.00012 35.4 0.5 48 36-90 12-65 (79)
79 2ea5_A Cell growth regulator w 51.9 14 0.00047 31.8 4.1 45 34-90 13-58 (68)
80 4ap4_A E3 ubiquitin ligase RNF 48.3 6 0.00021 37.0 1.4 55 35-91 6-61 (133)
81 2k16_A Transcription initiatio 47.9 7.2 0.00025 34.1 1.8 53 35-91 17-72 (75)
82 1bor_A Transcription factor PM 47.8 9.9 0.00034 31.1 2.5 45 36-91 6-50 (56)
83 3nw0_A Non-structural maintena 47.2 9.6 0.00033 40.8 2.9 49 36-90 180-229 (238)
84 2y1n_A E3 ubiquitin-protein li 46.1 10 0.00034 43.6 3.0 48 37-91 333-380 (389)
85 3dpl_R Ring-box protein 1; ubi 46.1 12 0.00042 35.0 3.2 54 35-89 36-100 (106)
86 2ecg_A Baculoviral IAP repeat- 44.1 14 0.00048 31.9 3.0 43 36-90 25-68 (75)
87 1xwh_A Autoimmune regulator; P 43.8 5.5 0.00019 34.3 0.3 50 31-87 3-55 (66)
88 2ecj_A Tripartite motif-contai 43.5 31 0.0011 27.5 4.9 42 36-84 15-58 (58)
89 4g9i_A Hydrogenase maturation 42.9 9.2 0.00031 47.6 2.3 58 34-91 104-191 (772)
90 2vje_A E3 ubiquitin-protein li 42.9 9.5 0.00032 32.2 1.7 49 34-90 6-57 (64)
91 3ttc_A HYPF, transcriptional r 42.4 9.2 0.00031 46.7 2.1 55 35-89 16-100 (657)
92 3knv_A TNF receptor-associated 42.4 7 0.00024 38.4 0.9 46 36-88 31-76 (141)
93 2vrw_B P95VAV, VAV1, proto-onc 41.9 10 0.00034 42.9 2.2 35 34-71 355-390 (406)
94 2kdx_A HYPA, hydrogenase/ureas 41.1 2.8 9.6E-05 40.1 -2.1 30 55-91 73-103 (119)
95 2ku3_A Bromodomain-containing 40.1 5.9 0.0002 34.9 -0.1 56 30-87 10-66 (71)
96 1m3v_A FLIN4, fusion of the LI 38.4 22 0.00074 33.6 3.6 24 64-89 56-80 (122)
97 3ky9_A Proto-oncogene VAV; cal 38.0 13 0.00046 44.2 2.6 35 35-72 528-563 (587)
98 2js4_A UPF0434 protein BB2007; 36.7 2.9 9.9E-05 36.9 -2.6 40 64-103 12-51 (70)
99 2l43_A N-teminal domain from h 36.5 8.1 0.00028 35.3 0.3 54 33-88 22-76 (88)
100 3a43_A HYPD, hydrogenase nicke 36.4 4.3 0.00015 40.1 -1.7 14 78-91 107-120 (139)
101 1tot_A CREB-binding protein; z 36.1 9.7 0.00033 31.6 0.7 31 36-72 6-37 (52)
102 1twf_L ABC10-alpha, DNA-direct 36.1 16 0.00053 32.3 2.0 27 36-64 28-54 (70)
103 2co8_A NEDD9 interacting prote 36.0 20 0.00069 31.5 2.8 61 31-95 10-79 (82)
104 2xjy_A Rhombotin-2; oncoprotei 35.8 18 0.00063 34.2 2.7 46 37-88 30-76 (131)
105 2jny_A Uncharacterized BCR; st 35.1 2.7 9.4E-05 36.8 -2.9 32 72-103 22-53 (67)
106 1wim_A KIAA0161 protein; ring 34.3 17 0.0006 32.6 2.1 49 36-88 5-62 (94)
107 2gai_A DNA topoisomerase I; zi 33.1 8.7 0.0003 46.7 -0.2 45 38-87 574-621 (633)
108 3v43_A Histone acetyltransfera 32.6 28 0.00095 32.8 3.3 51 36-86 5-63 (112)
109 2yu4_A E3 SUMO-protein ligase 32.0 28 0.00096 31.5 3.1 46 36-87 7-59 (94)
110 2d8y_A Eplin protein; LIM doma 32.0 71 0.0024 28.3 5.8 34 29-62 8-49 (91)
111 2dj7_A Actin-binding LIM prote 30.9 24 0.00083 30.9 2.4 37 29-65 8-52 (80)
112 2l5u_A Chromodomain-helicase-D 29.8 20 0.00069 30.3 1.6 47 33-86 8-57 (61)
113 1x4u_A Zinc finger, FYVE domai 29.3 43 0.0015 29.9 3.8 36 31-69 9-44 (84)
114 2hf1_A Tetraacyldisaccharide-1 28.3 2.8 9.6E-05 36.8 -4.0 39 64-102 12-50 (68)
115 2vje_B MDM4 protein; proto-onc 28.2 23 0.0008 29.7 1.7 47 36-90 7-56 (63)
116 1rut_X Flinc4, fusion protein 28.1 30 0.001 35.1 2.9 23 64-88 56-79 (188)
117 2e72_A POGO transposable eleme 27.8 19 0.00065 29.7 1.0 15 77-91 11-25 (49)
118 2cup_A Skeletal muscle LIM-pro 26.9 26 0.00089 31.5 1.9 23 63-88 54-76 (101)
119 4a0k_B E3 ubiquitin-protein li 26.7 15 0.00053 35.2 0.4 54 35-89 47-111 (117)
120 3htk_C E3 SUMO-protein ligase 26.7 33 0.0011 37.5 3.0 51 34-90 179-232 (267)
121 2gmg_A Hypothetical protein PF 26.3 14 0.00049 35.0 0.1 26 56-87 68-93 (105)
122 2cor_A Pinch protein; LIM doma 25.8 43 0.0015 29.1 3.1 37 32-68 11-54 (79)
123 1m4f_A Hepcidin; strand-loop-s 25.5 3.2 0.00011 30.1 -3.4 9 62-70 3-11 (26)
124 4ic3_A E3 ubiquitin-protein li 25.4 22 0.00076 30.6 1.1 43 36-90 24-67 (74)
125 1x61_A Thyroid receptor intera 25.3 55 0.0019 27.5 3.6 10 63-72 54-63 (72)
126 2xqn_T Testin, TESS; metal-bin 25.2 31 0.0011 32.4 2.2 42 38-88 32-73 (126)
127 2orw_A Thymidine kinase; TMTK, 24.7 25 0.00086 35.4 1.6 35 37-71 138-178 (184)
128 1w4r_A Thymidine kinase; type 24.6 21 0.00073 37.1 1.0 35 37-71 152-191 (195)
129 1mm2_A MI2-beta; PHD, zinc fin 24.3 30 0.001 29.2 1.7 46 35-87 8-56 (61)
130 2jr6_A UPF0434 protein NMA0874 24.1 5.1 0.00017 35.1 -3.2 32 72-103 20-51 (68)
131 1dl6_A Transcription factor II 24.1 54 0.0018 27.6 3.2 24 38-63 13-38 (58)
132 2lri_C Autoimmune regulator; Z 23.9 32 0.0011 29.8 1.8 46 34-86 10-58 (66)
133 2ksl_A U1-agatoxin-TA1A; insec 23.9 3 0.0001 33.2 -4.2 26 35-60 19-48 (51)
134 3t6p_A Baculoviral IAP repeat- 23.8 21 0.00073 40.2 0.9 43 36-90 295-338 (345)
135 3lqh_A Histone-lysine N-methyl 23.1 28 0.00094 36.0 1.5 54 35-88 1-64 (183)
136 3q80_A 2-C-methyl-D-erythritol 22.8 98 0.0034 32.4 5.7 28 568-595 100-127 (231)
137 2pk7_A Uncharacterized protein 22.4 4.2 0.00014 35.8 -4.1 32 72-103 20-51 (69)
138 1we9_A PHD finger family prote 22.1 20 0.00067 30.3 0.1 54 35-91 5-62 (64)
139 1f62_A Transcription factor WS 20.3 30 0.001 27.9 0.8 45 38-86 2-49 (51)
No 1
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=100.00 E-value=2.9e-50 Score=496.63 Aligned_cols=492 Identities=23% Similarity=0.347 Sum_probs=376.6
Q ss_pred hHH-HHHHHHHHHHHhhhhhccccccc-----hhhHHHHHHHHHHHHHHHHHHhhcCcccccccchhhhHhhhhhccCCC
Q 001373 288 YRL-IILLRLVILGLFFHYRILHPVND-----AYGLWLTSVICEIWFAVSWILDQFPKWDPIVRETYLDRLSLRYEKEGK 361 (1091)
Q Consensus 288 yR~-~i~~~l~~l~~~l~wRi~~~~~~-----a~~lwl~~~~~Ei~f~~~wiL~q~~kw~Pv~R~~~~~rL~~r~~~~~~ 361 (1091)
.|+ ++++.+++.++|++||++.+++. ++++|++++++|+++.+.|++..+..|+|..|...++ ..
T Consensus 65 ~~~~~~~~~~~~~~~y~~wr~~~tl~~~~~~~~~~~~~~ll~~~~~~~~~~l~~~~~~~~~~~r~~~~~---------~~ 135 (802)
T 4hg6_A 65 PRFLLLSAASMLVMRYWFWRLFETLPPPALDASFLFALLLFAVETFSISIFFLNGFLSADPTDRPFPRP---------LQ 135 (802)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCCCC---------CC
T ss_pred hHHHHHHHHHHHHHHHHHHHhheecCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCC---------CC
Confidence 455 56667777899999999987653 2467888999999999999999999999998875432 23
Q ss_pred CCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCchhhhHHHHhhhHHHhhhhhhhhhhcCCCCC
Q 001373 362 PSDLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPR 441 (1091)
Q Consensus 362 ~~~lP~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFCkk~~iepR 441 (1091)
++++|.|+|+||||| |++.++.+|+.|++++|||.+++.|+|+|||+++-|.+.
T Consensus 136 ~~~~P~VSViIPtyN---e~~~lL~~~L~Sl~~q~yp~~~~eIiVVDDgStD~T~~~----------------------- 189 (802)
T 4hg6_A 136 PEELPTVDILVPSYN---EPADMLSVTLAAAKNMIYPARLRTVVLCDDGGTDQRCMS----------------------- 189 (802)
T ss_dssp TTTCCCEEEEEECTT---CCHHHHHHHHHHHHTSSCCTTCCEEEEESTTCHHHHHTC-----------------------
T ss_pred ccCCCcEEEEEEECC---CCHHHHHHHHHHHHhccCCCCcEEEEEEECCCCcccccc-----------------------
Confidence 567999999999998 999999999999999999999999999999999855431
Q ss_pred CchhhhhhccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCCCCCCCCCchhhhhhhcC
Q 001373 442 APEWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQ 521 (1091)
Q Consensus 442 aPe~YFs~~~d~~~~~~~~~f~~err~mkreYee~k~rI~~l~~~~~~~p~~~w~m~dg~~w~g~~~rdHp~iiqv~l~~ 521 (1091)
..|+.+++..+ .++ .++.++++
T Consensus 190 ----------------~d~~i~~~~~~---~~~----~l~~~~~~----------------------------------- 211 (802)
T 4hg6_A 190 ----------------PDPELAQKAQE---RRR----ELQQLCRE----------------------------------- 211 (802)
T ss_dssp ----------------SSHHHHHHHHH---HHH----HHHHHHHH-----------------------------------
T ss_pred ----------------CCHHHHHHHHh---hhH----HHHHHHHh-----------------------------------
Confidence 11222222111 111 22222210
Q ss_pred CCCccccCCccCcEEEEeccCCCCCCCCCcchhhHHHHHhhccccCCCEEEEecCCCCCCcHHHHHHHHHhh-cCCCCCc
Q 001373 522 NGVRDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFM-MDPTSGK 600 (1091)
Q Consensus 522 ~g~~d~~~~~lP~lvYvsRekRpg~~hh~KAGalNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff-~Dp~~g~ 600 (1091)
.++.|+.|++ +++.||||+|.+++. ++++||+++|||++ +.|++|++++.+| .||
T Consensus 212 -----------~~v~~i~~~~----~~~GKa~alN~gl~~----a~gd~Il~lDaD~~-~~pd~L~~lv~~~~~dp---- 267 (802)
T 4hg6_A 212 -----------LGVVYSTRER----NEHAKAGNMSAALER----LKGELVVVFDADHV-PSRDFLARTVGYFVEDP---- 267 (802)
T ss_dssp -----------HTCEEEECSS----CCSHHHHHHHHHHHH----CCCSEEEECCTTEE-ECTTHHHHHHHHHHHSS----
T ss_pred -----------cCcEEEEecC----CCCcchHHHHHHHHh----cCCCEEEEECCCCC-cChHHHHHHHHHHhcCC----
Confidence 0378899987 678999999999996 69999999999998 6899999999988 588
Q ss_pred ceEEEecceeecCCCcc-------ccccchhhhhhhhhccccccCCCccccccccchhhhhhcCCCCCCCCCCCCCcCCC
Q 001373 601 KICYVQFPQRFDGIDRH-------DRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKPPRKTCNC 673 (1091)
Q Consensus 601 ~va~VQ~PQ~F~nid~~-------Dry~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~ 673 (1091)
++++||+|+.+.|.++. .++.+++..||.....+.+.+++++++|++++|||+++
T Consensus 268 ~v~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~al------------------ 329 (802)
T 4hg6_A 268 DLFLVQTPHFFINPDPIQRNLALGDRCPPENEMFYGKIHRGLDRWGGAFFCGSAAVLRRRAL------------------ 329 (802)
T ss_dssp SCCEEECCCCBSSCCHHHHHHTCCTTSCCTTHHHHHTHHHHHHHTTCCCCCSSSEEEEHHHH------------------
T ss_pred CeEEEeccEEEeCCchHhhhhhHHhhhhHHHHHHHHHHHhhHhhcCCceecccchhhhHHHH------------------
Confidence 89999999999987742 45567788999999999999999999999999999887
Q ss_pred CCCccccccccccccccccCCccCCcchhhhhhhhhhhhcccccccccccCCchhhHhhhcCCcHHHHHhhhhhhCCCCC
Q 001373 674 LPKWCCCCCRSRKKSKKGKSNKKNKDTSKQIYALENIEEGIEGIDNEKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPT 753 (1091)
Q Consensus 674 ~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~~~ 753 (1091)
+++||+++
T Consensus 330 ------------------------------------------------------------------------~~vGgf~~ 337 (802)
T 4hg6_A 330 ------------------------------------------------------------------------DEAGGFAG 337 (802)
T ss_dssp ------------------------------------------------------------------------HHHTTCCC
T ss_pred ------------------------------------------------------------------------HHcCCcCC
Confidence 24676653
Q ss_pred CCChhhHHHhhhhhccccccccCccccccCcccccccchHHHHHHHHHCCcEEEEecCCCCcccccCCCCHHHHHHHHHH
Q 001373 754 GASTASLLNEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLR 833 (1091)
Q Consensus 754 ~~~~~~~l~ea~~v~sc~YE~~T~WG~evGW~ygsvTEDi~TglrLh~~GWrsvY~~p~~~AF~G~aP~tl~~~l~QR~R 833 (1091)
++++||.+++++++++||+++|++.. .+ ++.+|+|+.++++||.|
T Consensus 338 ---------------------------------~~~~ED~~l~~rl~~~G~ri~~~~~~-~~-~~~~p~t~~~~~~Qr~R 382 (802)
T 4hg6_A 338 ---------------------------------ETITEDAETALEIHSRGWKSLYIDRA-MI-AGLQPETFASFIQQRGR 382 (802)
T ss_dssp ---------------------------------SSSSHHHHHHHHHHTTTCCEEECCCC-CE-EECCCCSHHHHHHHHHH
T ss_pred ---------------------------------CCcchHHHHHHHHHHcCCeEEEecCC-EE-EecCCCCHHHHHHHHHH
Confidence 57889999999999999999999543 33 89999999999999999
Q ss_pred HhhcchHHHhhhccccccccCCCCCccccchhhhhhhHHhHHHHHHHHHHHHHHHHHhCCcccccchhHHHHHHH-HHHH
Q 001373 834 WALGSVEILLSRHCPIWYGYGCGLKPLERFSYINSVVYPITSIPLIAYCTLPAICLLTGKFIVPEISNYASILFM-ALFI 912 (1091)
Q Consensus 834 WA~G~lQil~sk~~Pl~~g~~~~L~~~QRL~Yl~~~ly~l~sl~~liylllP~l~Ll~G~~iip~~s~~~~i~fi-~lfl 912 (1091)
|++|.+|+++. ++|++ .+++++.+|+.|+...++++.+++.++++++|+++++++..++......+..+++ ++++
T Consensus 383 W~~G~~q~l~~-~~pl~---~~~l~~~~rl~~l~~~~~~~~~~~~li~ll~p~~~ll~~~~~~~~~~~~~~~~~lp~~l~ 458 (802)
T 4hg6_A 383 WATGMMQMLLL-KNPLF---RRGLGIAQRLCYLNSMSFWFFPLVRMMFLVAPLIYLFFGIEIFVATFEEVLAYMPGYLAV 458 (802)
T ss_dssp HHHHHHHHHHH-SCTTS---CSSCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHH
T ss_pred HHccHHHHHHH-hCccc---cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHHH
Confidence 99999999985 57877 6789999999999999999999999999999999999998887754333222222 1222
Q ss_pred HHHHHHHHHhhccCcccccccchhhHHHhhhhHHHHHHHHHHHHHHhcCCccceeeCCCCCCCCccccceecccccchHH
Q 001373 913 SIAATGILEMQWGGVGIHDWWRNEQFWVIGGASSHLFALIQGLLKVVGGVNTNFTVTSKAADDGEFSDLYLFKWTSLLIP 992 (1091)
Q Consensus 913 s~~~~~lLe~~wsG~si~~wWrne~~W~I~~~sa~lfAv~~aLlk~L~g~~~~F~VTpKg~~~~~~~~ly~f~ws~L~iP 992 (1091)
...+...+ +.+.. ..|| ++.++.+.+.. .+.+++.+ .+++++.+|+||+|+...+.. +-+ .++.|
T Consensus 459 ~~~~~~~~---~~~~r-~~~~-~~l~~~~~~~~-~~~a~l~~---l~~~~~~~f~VT~Kg~~~~~~-----~~~-~~~~p 523 (802)
T 4hg6_A 459 SFLVQNAL---FARQR-WPLV-SEVYEVAQAPY-LARAIVTT---LLRPRSARFAVTAKDETLSEN-----YIS-PIYRP 523 (802)
T ss_dssp HHHHHHHH---HTTTS-CTTH-HHHHHHHHHHH-HHHHHHHH---HHSTTCCCCCCCCCCCCCSSC-----CBC-TTCHH
T ss_pred HHHHHHHH---hcCcH-HHHH-HHHHHHHHHHH-HHHHHHHH---HhCCCCCcceECCCCcccccc-----chh-hHHHH
Confidence 22222222 11111 1233 34444332221 12333333 345688999999999764332 113 47789
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHHHHhh
Q 001373 993 PLTLLVFNLIGVIIGVADAISNGYETWGPLFGKLFFSLWVILHLYPFLKGFL 1044 (1091)
Q Consensus 993 ~~~Llilnlvaiv~gi~r~i~~g~~~wg~l~g~lf~~~Wvvv~l~Pfl~gL~ 1044 (1091)
++++++++++++++|+++...... +..+.+++++|+++|++.+.-++.
T Consensus 524 ~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~w~~~~l~~l~~~~~ 571 (802)
T 4hg6_A 524 LLFTFLLCLSGVLATLVRWVAFPG----DRSVLLVVGGWAVLNVLLVGFALR 571 (802)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhccCC----ccchhhhhhHHHHHHHHHHHHHHH
Confidence 999999999999999998876432 345678999999999999988884
No 2
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=100.00 E-value=8.8e-46 Score=333.47 Aligned_cols=84 Identities=65% Similarity=1.327 Sum_probs=81.8
Q ss_pred cccccccCCccccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhcccccCCCCCCCCCCCCCcc
Q 001373 28 VTSVKELSGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRVDGDEEEDDTD 107 (1091)
Q Consensus 28 ~~~~~~~~~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Ykr~kgsprv~gd~ee~~~d 107 (1091)
+|||+++++|+||||||+||+++|||+|||||||+|||||||||||||||||+|||||||||||||||||+|||||+|+|
T Consensus 8 ~kp~~~~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr~kgsp~v~GDe~e~d~d 87 (93)
T 1weo_A 8 PKPLKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKRLRGSPRVEGDEDEEDID 87 (93)
T ss_dssp SSCCSCCSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCCCTTCCCCTTSCCCCCSC
T ss_pred CCcccccCCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccccccCCCCccccccccccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 001373 108 DLEN 111 (1091)
Q Consensus 108 d~~~ 111 (1091)
|+++
T Consensus 88 D~~~ 91 (93)
T 1weo_A 88 SGPS 91 (93)
T ss_dssp CCCS
T ss_pred cccc
Confidence 9864
No 3
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=99.48 E-value=3.5e-13 Score=160.92 Aligned_cols=129 Identities=18% Similarity=0.194 Sum_probs=99.7
Q ss_pred CCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCchhhhHHHHhhhHHHhhhhhhhhhhcCCCCC
Q 001373 362 PSDLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPR 441 (1091)
Q Consensus 362 ~~~lP~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFCkk~~iepR 441 (1091)
+..+|.|+|+|||+| | +..+..|+.|+++.+||. .+.|+|.|||.++-|.+.+
T Consensus 89 ~~~~p~vsviIp~~n---~-~~~l~~~l~sl~~q~~~~-~~eiivvDd~s~d~t~~~~---------------------- 141 (625)
T 2z86_A 89 QLIIDGLSIVIPTYN---R-AKILAITLACLCNQKTIY-DYEVIVADDGSKENIEEIV---------------------- 141 (625)
T ss_dssp -CCCCCEEEEEEESS---C-HHHHHHHHHHHHTCCCSS-CEEEEEEEESCSSCHHHHH----------------------
T ss_pred cccCCcEEEEEecCC---c-HHHHHHHHHHHHhhccCC-CeEEEEEeCCCchhHHHHH----------------------
Confidence 457899999999998 7 488999999999999986 7899999999876322111
Q ss_pred CchhhhhhccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCCCCCCCCCchhhhhhhcC
Q 001373 442 APEWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQ 521 (1091)
Q Consensus 442 aPe~YFs~~~d~~~~~~~~~f~~err~mkreYee~k~rI~~l~~~~~~~p~~~w~m~dg~~w~g~~~rdHp~iiqv~l~~ 521 (1091)
+.+.
T Consensus 142 ---------------------------------------~~~~------------------------------------- 145 (625)
T 2z86_A 142 ---------------------------------------REFE------------------------------------- 145 (625)
T ss_dssp ---------------------------------------HTTT-------------------------------------
T ss_pred ---------------------------------------HHhh-------------------------------------
Confidence 0000
Q ss_pred CCCccccCCccCcEEEEeccCCCCCCCCCcchhhHHHHHhhccccCCCEEEEecCCCCCCcHHHHHHHHHhhc-CCCCCc
Q 001373 522 NGVRDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMM-DPTSGK 600 (1091)
Q Consensus 522 ~g~~d~~~~~lP~lvYvsRekRpg~~hh~KAGalNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~-Dp~~g~ 600 (1091)
.-+++.|+.+++ +.+.||+|+|.+++. +.|+||+++|+|++ +.|++|.+++..|. +|
T Consensus 146 ---------~~~~i~~i~~~~----~~~g~~~a~N~g~~~----a~g~~v~~lD~D~~-~~~~~l~~~~~~~~~~~---- 203 (625)
T 2z86_A 146 ---------SLLNIKYVRQKD----YGYQLCAVRNLGLRA----AKYNYVAILDCDMA-PNPLWVQSYMELLAVDD---- 203 (625)
T ss_dssp ---------TTSCEEEEEECC----CSCCHHHHHHHHHHH----CCSSEEEEECTTEE-ECTTHHHHHHHHHHHCT----
T ss_pred ---------hcCCeEEEEeCC----CCcchhHHHHHHHHh----CCcCEEEEECCCCC-CCHHHHHHHHHHHhcCC----
Confidence 002478888764 345799999999996 68999999999998 58999999999886 66
Q ss_pred ceEEEecceeecCCC
Q 001373 601 KICYVQFPQRFDGID 615 (1091)
Q Consensus 601 ~va~VQ~PQ~F~nid 615 (1091)
.++.|+..+.+.+..
T Consensus 204 ~~~~~g~~~~~~~~~ 218 (625)
T 2z86_A 204 NVALIGPRKYIDTSK 218 (625)
T ss_dssp TEEEECCEEEECCTT
T ss_pred ceEEEEeeeeccCcc
Confidence 788888877665443
No 4
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=99.40 E-value=3.9e-12 Score=147.03 Aligned_cols=116 Identities=17% Similarity=0.094 Sum_probs=91.7
Q ss_pred CCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCchhh-hHHHHhhhHHHhhhhhhhhhhcCCCC
Q 001373 362 PSDLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAML-TFEALSETSEFARKWVPFCKKFKIEP 440 (1091)
Q Consensus 362 ~~~lP~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~l-tf~al~Eaa~FA~~WvPFCkk~~iep 440 (1091)
++++|.|.|+|||+| |+...+..||.|+++.+||.....|+|.|||.+.- |.+.|
T Consensus 25 ~~~~p~vSVIIp~yN---~~~~~l~~~l~Sl~~q~~~~~~~EIIvVDd~S~d~~t~~~l--------------------- 80 (472)
T 1xhb_A 25 PDNLPTTSVVIVFHN---EAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPL--------------------- 80 (472)
T ss_dssp CSCCCCEEEEEEESS---CCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHH---------------------
T ss_pred CcCCCCeEEEEEeCC---CCHHHHHHHHHHHHhcCcHhHceEEEEEECCCCcHHHHHHH---------------------
Confidence 467999999999998 88789999999999999997667999999998751 22211
Q ss_pred CCchhhhhhccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCCCCCCCCCchhhhhhhc
Q 001373 441 RAPEWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLG 520 (1091)
Q Consensus 441 RaPe~YFs~~~d~~~~~~~~~f~~err~mkreYee~k~rI~~l~~~~~~~p~~~w~m~dg~~w~g~~~rdHp~iiqv~l~ 520 (1091)
+++++
T Consensus 81 ----------------------------------------~~~~~----------------------------------- 85 (472)
T 1xhb_A 81 ----------------------------------------ESYVK----------------------------------- 85 (472)
T ss_dssp ----------------------------------------HHHHH-----------------------------------
T ss_pred ----------------------------------------HHHHH-----------------------------------
Confidence 11110
Q ss_pred CCCCccccCCccC-cEEEEeccCCCCCCCCCcchhhHHHHHhhccccCCCEEEEecCCCCCCcHHHHHHHHHhhc-CC
Q 001373 521 QNGVRDIEGNLLP-RLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMM-DP 596 (1091)
Q Consensus 521 ~~g~~d~~~~~lP-~lvYvsRekRpg~~hh~KAGalNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~-Dp 596 (1091)
..| ++.++..+++.| +++|+|.+++. +.|+||+.+|+|.. .+|++|.+++..+. +|
T Consensus 86 ----------~~~~~v~vi~~~~n~G-----~~~a~N~g~~~----A~gd~i~flD~D~~-~~p~~L~~ll~~~~~~~ 143 (472)
T 1xhb_A 86 ----------KLKVPVHVIRMEQRSG-----LIRARLKGAAV----SRGQVITFLDAHCE-CTAGWLEPLLARIKHDR 143 (472)
T ss_dssp ----------SSSSCEEEEECSSCCC-----HHHHHHHHHHH----CCSSEEEEEESSEE-ECTTCHHHHHHHHHHCT
T ss_pred ----------HCCCcEEEEECCCCCC-----hHHHHHHHHHh----ccCCeEEEECCCeE-eCccHHHHHHHHHHhCC
Confidence 123 578888776443 99999999996 68999999999997 68999999999775 55
No 5
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=99.37 E-value=3.5e-12 Score=152.10 Aligned_cols=115 Identities=17% Similarity=0.087 Sum_probs=90.7
Q ss_pred CCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCchhhh-HHHHhhhHHHhhhhhhhhhhcCCCCC
Q 001373 363 SDLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLT-FEALSETSEFARKWVPFCKKFKIEPR 441 (1091)
Q Consensus 363 ~~lP~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~lt-f~al~Eaa~FA~~WvPFCkk~~iepR 441 (1091)
+.+|.|.|+||||| |+...+.+||.|+++..||...+.|+|.|||...-| .+.|
T Consensus 109 ~~~P~vSVIIp~yN---e~~~~L~~~L~Sll~qt~~~~~~EIIVVDDgS~D~tl~~~l---------------------- 163 (570)
T 2d7i_A 109 ETLPNTSIIIPFHN---EGWSSLLRTVHSVLNRSPPELVAEIVLVDDFSDREHLKKPL---------------------- 163 (570)
T ss_dssp SSCCCEEEEEEESS---CCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCCCGGGTHHH----------------------
T ss_pred CCCCCeEEEEEECC---CCHHHHHHHHHHHHhcCCccCcEEEEEEECCCCcHHHHHHH----------------------
Confidence 56899999999998 877899999999999999965568999999988643 1111
Q ss_pred CchhhhhhccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCCCCCCCCCchhhhhhhcC
Q 001373 442 APEWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQ 521 (1091)
Q Consensus 442 aPe~YFs~~~d~~~~~~~~~f~~err~mkreYee~k~rI~~l~~~~~~~p~~~w~m~dg~~w~g~~~rdHp~iiqv~l~~ 521 (1091)
+.+++
T Consensus 164 ---------------------------------------~~~~~------------------------------------ 168 (570)
T 2d7i_A 164 ---------------------------------------EDYMA------------------------------------ 168 (570)
T ss_dssp ---------------------------------------HHHHT------------------------------------
T ss_pred ---------------------------------------HHHHH------------------------------------
Confidence 11110
Q ss_pred CCCccccCCccCcEEEEeccCCCCCCCCCcchhhHHHHHhhccccCCCEEEEecCCCCCCcHHHHHHHHHhhcCC
Q 001373 522 NGVRDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDP 596 (1091)
Q Consensus 522 ~g~~d~~~~~lP~lvYvsRekRpg~~hh~KAGalNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp 596 (1091)
..|++.++..+++. .+++|+|.+++. +.|+||+.||+|.. .+|++|.+.+-.+.+.
T Consensus 169 ---------~~~~v~vi~~~~n~-----G~~~A~N~G~~~----A~gd~i~fLD~D~~-~~p~~L~~ll~~l~~~ 224 (570)
T 2d7i_A 169 ---------LFPSVRILRTKKRE-----GLIRTRMLGASV----ATGDVITFLDSHCE-ANVNWLPPLLDRIARN 224 (570)
T ss_dssp ---------TSTTEEEEECSSCC-----CHHHHHHHHHHH----CCSSEEEECCSSEE-ECTTCSHHHHHHHHHC
T ss_pred ---------hCCeEEEEECCCCC-----CHHHHHHHHHHh----cCCCEEEEEcCCcc-ccccHHHHHHHHHHhC
Confidence 11457888777643 499999999996 68999999999998 5899999999987543
No 6
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=99.33 E-value=1.1e-12 Score=137.64 Aligned_cols=124 Identities=13% Similarity=0.249 Sum_probs=93.4
Q ss_pred CceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCchhhhHHHHhhhHHHhhhhhhhhhhcCCCCCCchh
Q 001373 366 ADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRAPEW 445 (1091)
Q Consensus 366 P~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFCkk~~iepRaPe~ 445 (1091)
|.|.|+|||+| ++ ..+.+|+.|+++.+|| .+.++|.|||.+.-|.+.+.+
T Consensus 1 p~vSViIp~yn---~~-~~l~~~l~Sl~~q~~~--~~eiivvDd~S~d~t~~~~~~------------------------ 50 (255)
T 1qg8_A 1 PKVSVIMTSYN---KS-DYVAKSISSILSQTFS--DFELFIMDDNSNEETLNVIRP------------------------ 50 (255)
T ss_dssp CCEEEEEEESS---CT-TTHHHHHHHHHTCSCC--CEEEEEEECSCCHHHHHHHGG------------------------
T ss_pred CeEEEEEEcCC---CH-HHHHHHHHHHHhccCC--ceEEEEEECCCCchHHHHHHH------------------------
Confidence 67999999998 55 7889999999999998 688999999988643322110
Q ss_pred hhhhccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCCCCCCCCCchhhhhhhcCCCCc
Q 001373 446 YFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVR 525 (1091)
Q Consensus 446 YFs~~~d~~~~~~~~~f~~err~mkreYee~k~rI~~l~~~~~~~p~~~w~m~dg~~w~g~~~rdHp~iiqv~l~~~g~~ 525 (1091)
++ .
T Consensus 51 -------------------------------------~~-----------------------------------~----- 53 (255)
T 1qg8_A 51 -------------------------------------FL-----------------------------------N----- 53 (255)
T ss_dssp -------------------------------------GG-----------------------------------G-----
T ss_pred -------------------------------------Hh-----------------------------------h-----
Confidence 00 0
Q ss_pred cccCCccCcEEEEeccCCCCC----CCCCcchhhHHHHHhhccccCCCEEEEecCCCCCCcHHHHHHHHHhhc-CCCCCc
Q 001373 526 DIEGNLLPRLVYVSREKRPGF----DHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMM-DPTSGK 600 (1091)
Q Consensus 526 d~~~~~lP~lvYvsRekRpg~----~hh~KAGalNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~-Dp~~g~ 600 (1091)
-|++.|+..+.. +. ....+++|+|.+++. ++|+||+.+|+|.+ ..|++|.+.+..|. +|
T Consensus 54 ------~~~i~~i~~~~~-~~~~~~~n~G~~~a~N~gi~~----a~g~~i~~lD~Dd~-~~~~~l~~~~~~~~~~~---- 117 (255)
T 1qg8_A 54 ------DNRVRFYQSDIS-GVKERTEKTRYAALINQAIEM----AEGEYITYATDDNI-YMPDRLLKMVRELDTHP---- 117 (255)
T ss_dssp ------STTEEEEECCCC-SHHHHHSSCHHHHHHHHHHHH----CCCSEEEEEETTEE-ECTTHHHHHHHHHHHCT----
T ss_pred ------cCCEEEEecccc-cccccccccCHHHHHHHHHHH----cCCCEEEEeCCCCc-cChHHHHHHHHHHHhCC----
Confidence 124777777610 00 123599999999985 69999999999998 58999999998775 66
Q ss_pred ceEEEecceeec
Q 001373 601 KICYVQFPQRFD 612 (1091)
Q Consensus 601 ~va~VQ~PQ~F~ 612 (1091)
++++|.....+.
T Consensus 118 ~~~~v~~~~~~~ 129 (255)
T 1qg8_A 118 EKAVIYSASKTY 129 (255)
T ss_dssp TCCEEEEEEEEE
T ss_pred CceEEEeceEEE
Confidence 677888876655
No 7
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=99.33 E-value=5.5e-12 Score=130.81 Aligned_cols=110 Identities=15% Similarity=0.169 Sum_probs=85.2
Q ss_pred CCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCchhhhHHHHhhhHHHhhhhhhhhhhcCCCCCCc
Q 001373 364 DLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRAP 443 (1091)
Q Consensus 364 ~lP~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFCkk~~iepRaP 443 (1091)
..|.|.|+||||| ++ ..+.+++.|+++.+|| .+.|+|.|||.+.-|.+.+.+
T Consensus 3 ~~p~vsViIp~yn---~~-~~l~~~l~Sl~~q~~~--~~eiIvvDd~S~d~t~~~~~~---------------------- 54 (240)
T 3bcv_A 3 LIPKVSVIVPIYN---VE-KYLDQCVQALLAQTLS--DIEIILIDDESPDNCPKICDD---------------------- 54 (240)
T ss_dssp CCCSEEEEEEESS---CT-TTHHHHHHHHHTCSSS--SEEEEEEECCCSSSHHHHHHH----------------------
T ss_pred CCCcEEEEEecCC---CH-HHHHHHHHHHHhCcCC--CeEEEEEECCCCcCHHHHHHH----------------------
Confidence 4689999999998 54 6788999999999998 589999999988744332111
Q ss_pred hhhhhhccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCCCCCCCCCchhhhhhhcCCC
Q 001373 444 EWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNG 523 (1091)
Q Consensus 444 e~YFs~~~d~~~~~~~~~f~~err~mkreYee~k~rI~~l~~~~~~~p~~~w~m~dg~~w~g~~~rdHp~iiqv~l~~~g 523 (1091)
+++
T Consensus 55 ---------------------------------------~~~-------------------------------------- 57 (240)
T 3bcv_A 55 ---------------------------------------YAA-------------------------------------- 57 (240)
T ss_dssp ---------------------------------------HHH--------------------------------------
T ss_pred ---------------------------------------HHh--------------------------------------
Confidence 110
Q ss_pred CccccCCccCcEEEEeccCCCCCCCCCcchhhHHHHHhhccccCCCEEEEecCCCCCCcHHHHHHHHHhhcCC
Q 001373 524 VRDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDP 596 (1091)
Q Consensus 524 ~~d~~~~~lP~lvYvsRekRpg~~hh~KAGalNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp 596 (1091)
..|++.|+..+ ...+++|.|.+++. ++|+||+.+|+|.+ ..|++|.+.+..+.++
T Consensus 58 -------~~~~i~~i~~~------n~G~~~a~N~g~~~----a~g~~i~~lD~Dd~-~~~~~l~~l~~~~~~~ 112 (240)
T 3bcv_A 58 -------QYPNIKVIHKK------NAGLGMACNSGLDV----ATGEYVAFCDSDDY-VDSDMYMTMYNVAQKY 112 (240)
T ss_dssp -------HCSSEEEEECC------CCCHHHHHHHHHHH----CCSSEEEECCTTCC-CCTTHHHHHHHHHHHH
T ss_pred -------hCCCEEEEECC------CCChHHHHHHHHHH----cCCCEEEEECCCCc-CCHHHHHHHHHHHHhc
Confidence 01356777532 23599999999996 68999999999998 6899999999988763
No 8
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=99.31 E-value=8.9e-12 Score=145.54 Aligned_cols=113 Identities=17% Similarity=0.085 Sum_probs=90.2
Q ss_pred CCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCchhhhHHHHhhhHHHhhhhhhhhhhcCCCCC
Q 001373 362 PSDLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPR 441 (1091)
Q Consensus 362 ~~~lP~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFCkk~~iepR 441 (1091)
+..+|.|.|+||||| |+...+.+||.|+++..||.....|+|.|||.+.-|.+.+
T Consensus 62 ~~~~p~vSVIIp~yN---~~~~~L~~~l~Sl~~q~~~~~~~EIIvVDDgS~D~t~~~~---------------------- 116 (501)
T 2ffu_A 62 RVDLPATSVVITFHN---EARSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPEDGAL---------------------- 116 (501)
T ss_dssp CSSCCCEEEEEEESS---CCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCSCTHHHHG----------------------
T ss_pred CcCCCCEEEEEEeCc---CcHHHHHHHHHHHHhhCchhhceeEEEEECCCCchHHHHH----------------------
Confidence 457999999999998 8766899999999999998756799999999876321100
Q ss_pred CchhhhhhccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCCCCCCCCCchhhhhhhcC
Q 001373 442 APEWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQ 521 (1091)
Q Consensus 442 aPe~YFs~~~d~~~~~~~~~f~~err~mkreYee~k~rI~~l~~~~~~~p~~~w~m~dg~~w~g~~~rdHp~iiqv~l~~ 521 (1091)
+.
T Consensus 117 -----------------------------------------~~------------------------------------- 118 (501)
T 2ffu_A 117 -----------------------------------------LG------------------------------------- 118 (501)
T ss_dssp -----------------------------------------GG-------------------------------------
T ss_pred -----------------------------------------Hh-------------------------------------
Confidence 00
Q ss_pred CCCccccCCccCcEEEEeccCCCCCCCCCcchhhHHHHHhhccccCCCEEEEecCCCCCCcHHHHHHHHHhhcCC
Q 001373 522 NGVRDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDP 596 (1091)
Q Consensus 522 ~g~~d~~~~~lP~lvYvsRekRpg~~hh~KAGalNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp 596 (1091)
..|++.|+..+++. .+++|+|.+++. +.|+||+.+|+|.. ..|++|.+.+..+.+.
T Consensus 119 ---------~~~~v~vi~~~~n~-----G~~~A~N~G~~~----A~gd~i~flD~D~~-~~p~~L~~ll~~~~~~ 174 (501)
T 2ffu_A 119 ---------KIEKVRVLRNDRRE-----GLMRSRVRGADA----AQAKVLTFLDSHCE-CNEHWLEPLLERVAED 174 (501)
T ss_dssp ---------GBTTEEEEECSSCC-----HHHHHHHHHHHH----CCSSEEEECCSSEE-ECTTCHHHHHHHHHHC
T ss_pred ---------cCCCEEEEECCCCc-----CHHHHHHHHHHh----cCCCEEEEECCCcc-cCccHHHHHHHHHHhC
Confidence 12457888877643 499999999996 68999999999998 5899999999987643
No 9
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=99.19 E-value=6.4e-11 Score=141.39 Aligned_cols=125 Identities=19% Similarity=0.243 Sum_probs=95.2
Q ss_pred CCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCchhhhHHHHhhhHHHhhhhhhhhhhcCCCCCC
Q 001373 363 SDLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRA 442 (1091)
Q Consensus 363 ~~lP~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFCkk~~iepRa 442 (1091)
...|.|.|+||||| ++ ..+..+|.|+++.+|| .+.++|.|||.+.-|.+-+.
T Consensus 372 ~~~~~vsiii~~yn---~~-~~l~~~l~s~~~q~~~--~~eiivvdd~S~d~t~~~~~---------------------- 423 (625)
T 2z86_A 372 KRVPLVSIYIPAYN---CS-KYIVRCVESALNQTIT--DLEVCICDDGSTDDTLRILQ---------------------- 423 (625)
T ss_dssp CSSCSEEEEEEESS---CT-TTHHHHHHHHHSSSCC--SEEEEEEEESCSSSHHHHHH----------------------
T ss_pred ccCCeEEEEEeCCC---CH-HHHHHHHHHHHhCcCC--CeEEEEEECcCChhHHHHHH----------------------
Confidence 45789999999998 54 6789999999999998 58899999998864333211
Q ss_pred chhhhhhccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCCCCCCCCCchhhhhhhcCC
Q 001373 443 PEWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQN 522 (1091)
Q Consensus 443 Pe~YFs~~~d~~~~~~~~~f~~err~mkreYee~k~rI~~l~~~~~~~p~~~w~m~dg~~w~g~~~rdHp~iiqv~l~~~ 522 (1091)
++.+
T Consensus 424 ---------------------------------------~~~~------------------------------------- 427 (625)
T 2z86_A 424 ---------------------------------------EHYA------------------------------------- 427 (625)
T ss_dssp ---------------------------------------HHHT-------------------------------------
T ss_pred ---------------------------------------HHHh-------------------------------------
Confidence 0100
Q ss_pred CCccccCCccCcEEEEeccCCCCCCCCCcchhhHHHHHhhccccCCCEEEEecCCCCCCcHHHHHHHHHhh-cCCCCCcc
Q 001373 523 GVRDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFM-MDPTSGKK 601 (1091)
Q Consensus 523 g~~d~~~~~lP~lvYvsRekRpg~~hh~KAGalNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff-~Dp~~g~~ 601 (1091)
..|++.|+. ++ ...+++|+|.+++. ++|+||+.+|+|.+ ..|++|.+.+..| .+| +
T Consensus 428 --------~~~~i~~~~-~~-----n~G~~~a~n~g~~~----a~g~~i~~ld~D~~-~~~~~l~~~~~~~~~~~----~ 484 (625)
T 2z86_A 428 --------NHPRVRFIS-QK-----NKGIGSASNTAVRL----CRGFYIGQLDSDDF-LEPDAVELCLDEFRKDL----S 484 (625)
T ss_dssp --------TCTTEEEEE-EC-----CCCHHHHHHHHHHH----CCSSEEEECCTTCE-ECTTHHHHHHHHHHHCT----T
T ss_pred --------hCCcEEEEe-CC-----CCCHHHHHHHHHHh----cCCCEEEEECCCcc-cChhHHHHHHHHHHhCC----C
Confidence 013567775 33 23599999999995 68999999999998 5899999999866 577 6
Q ss_pred eEEEecceeecCC
Q 001373 602 ICYVQFPQRFDGI 614 (1091)
Q Consensus 602 va~VQ~PQ~F~ni 614 (1091)
+++|.+...+.+.
T Consensus 485 ~~~v~~~~~~~~~ 497 (625)
T 2z86_A 485 LACVYTTNRNIDR 497 (625)
T ss_dssp CSEEEEEEEEECT
T ss_pred eeEEEeeeEEECC
Confidence 7888887766543
No 10
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=98.82 E-value=1.3e-08 Score=123.62 Aligned_cols=127 Identities=16% Similarity=0.142 Sum_probs=88.4
Q ss_pred CCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCc-EEEEcCCCchhhhHHHHhhhHHHhhhhhhhhhhcCCCC
Q 001373 362 PSDLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKV-ACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEP 440 (1091)
Q Consensus 362 ~~~lP~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl-~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFCkk~~iep 440 (1091)
+..-|.|.|+||||| + +..+.++|-|+++..|+.++. .|+|.|||.+.-+-
T Consensus 176 ~~~~pkVSVVIptYN---~-~~~L~~~L~SL~~qt~~~~~~~EIIVVDNgStD~s~------------------------ 227 (657)
T 4fix_A 176 APGTANIAVGIPTFN---R-PADCVNALRELTADPLVDQVIGAVIVPDQGERKVRD------------------------ 227 (657)
T ss_dssp CCSCCCEEEECCBSS---C-HHHHHHHHHHHTTSHHHHTTEEEEEEEECSSSCGGG------------------------
T ss_pred CCCCCeEEEEEEecC---C-HHHHHHHHHHHHcCccccCCCCEEEEEECcCCCccc------------------------
Confidence 345689999999998 4 468999999999999966655 89999999864100
Q ss_pred CCchhhhhhccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCCCCCCCCCchhhhhhhc
Q 001373 441 RAPEWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLG 520 (1091)
Q Consensus 441 RaPe~YFs~~~d~~~~~~~~~f~~err~mkreYee~k~rI~~l~~~~~~~p~~~w~m~dg~~w~g~~~rdHp~iiqv~l~ 520 (1091)
.+.+. +.. +..
T Consensus 228 ------------------~~~~~-----------e~~---~~~------------------------------------- 238 (657)
T 4fix_A 228 ------------------HPDFP-----------AAA---ARL------------------------------------- 238 (657)
T ss_dssp ------------------STTHH-----------HHH---HHH-------------------------------------
T ss_pred ------------------hHHHH-----------HHH---Hhc-------------------------------------
Confidence 00000 000 000
Q ss_pred CCCCccccCCccCcEEEEeccCCCCCCCCCcchhhHHHHHhhccccCCCEEEEecCCCCCCcHHHHHHHHHhhc-CCCCC
Q 001373 521 QNGVRDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMM-DPTSG 599 (1091)
Q Consensus 521 ~~g~~d~~~~~lP~lvYvsRekRpg~~hh~KAGalNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~-Dp~~g 599 (1091)
-|++.|+..+ . ...|||.|.+++...-.++++||+.+|.|.+ ..|++|.+.+.++. +|
T Consensus 239 -----------~~~I~vI~~~-N-----~G~a~a~N~Gl~~A~g~~~~dyIlfLD~D~~-~~pd~L~~ll~~l~~~~--- 297 (657)
T 4fix_A 239 -----------GSRLSIHDQP-N-----LGGSGGYSRVMYEALKNTDCQQILFMDDDIR-LEPDSILRVLAMHRFAK--- 297 (657)
T ss_dssp -----------GGGEEEEECC-C-----CHHHHHHHHHHHHHHHHCCCSEEEEECSSEE-ECTHHHHHHHHHHHHBS---
T ss_pred -----------CCCEEEEECC-C-----CCHHHHHHHHHHHHHhcCCCCEEEEECCCCc-cChhHHHHHHHHHHhCC---
Confidence 0247777654 2 3579999999886321237899999999998 67999999999885 44
Q ss_pred cceEEEec
Q 001373 600 KKICYVQF 607 (1091)
Q Consensus 600 ~~va~VQ~ 607 (1091)
+++.|+.
T Consensus 298 -~~~~vg~ 304 (657)
T 4fix_A 298 -APMLVGG 304 (657)
T ss_dssp -SCCEEEE
T ss_pred -CcEEEEe
Confidence 5566654
No 11
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Probab=98.77 E-value=2.7e-08 Score=110.27 Aligned_cols=54 Identities=15% Similarity=0.023 Sum_probs=44.2
Q ss_pred CCcchhhHHHHHhhccccCCCEEEEecCCCCCCcHHHHHHHHHh-hcCCCCCcceEEEeccee
Q 001373 549 HKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCF-MMDPTSGKKICYVQFPQR 610 (1091)
Q Consensus 549 h~KAGalNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcf-f~Dp~~g~~va~VQ~PQ~ 610 (1091)
..|++|+|.+++. ++|+||+.+|+|.+...|++|.+.+.. +.+| ++++|+....
T Consensus 117 ~G~~~a~n~g~~~----a~gd~i~~lD~D~~~~~p~~l~~l~~~l~~~~----~~~~v~g~~~ 171 (329)
T 3ckj_A 117 PGKGEALWRSLAA----SRGDIVVFVDSDLINPHPMFVPWLVGPLLTGD----GVHLVKSFYR 171 (329)
T ss_dssp CSHHHHHHHHHHH----CCCSEEEECCTTEESCCTTHHHHHHHHHHSCS----SCCEEEEEEE
T ss_pred CCHHHHHHHHHHh----CCCCEEEEECCCCCCcChHHHHHHHHHHHhCC----CccEEEEEec
Confidence 4599999999985 689999999999963578999999987 5677 6777777543
No 12
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=98.76 E-value=8.2e-10 Score=135.05 Aligned_cols=111 Identities=15% Similarity=0.182 Sum_probs=0.0
Q ss_pred CCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCchhhhHHHHhhhHHHhhhhhhhhhhcCCCCCCch
Q 001373 365 LADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRAPE 444 (1091)
Q Consensus 365 lP~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFCkk~~iepRaPe 444 (1091)
.|.|.|+|||+| ++ ..+..||-|+++.+|| .+.|+|.|||.+.-|.+-+.+
T Consensus 1 Mp~vSVIIp~yN---~~-~~L~~~L~Sll~Qt~~--~~EIIVVDDgStD~t~~il~~----------------------- 51 (729)
T 3l7i_A 1 MNKLTIIVTYYN---AE-EYITGCLESIKQQRTQ--DFNLIIVNDGSTDQSKKLMDE----------------------- 51 (729)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CceEEEEEEcCC---CH-HHHHHHHHHHHhCCCC--CeEEEEEECCCCCcHHHHHHH-----------------------
Confidence 378999999998 54 6789999999999999 678999999998744332211
Q ss_pred hhhhhccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCCCCCCCCCchhhhhhhcCCCC
Q 001373 445 WYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGV 524 (1091)
Q Consensus 445 ~YFs~~~d~~~~~~~~~f~~err~mkreYee~k~rI~~l~~~~~~~p~~~w~m~dg~~w~g~~~rdHp~iiqv~l~~~g~ 524 (1091)
|.+ .|+
T Consensus 52 ----------------------------~~~----------------------------------~~~------------ 57 (729)
T 3l7i_A 52 ----------------------------AIK----------------------------------DYD------------ 57 (729)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------------------------HHH----------------------------------hCC------------
Confidence 000 000
Q ss_pred ccccCCccCcEEEEeccCCCCCCCCCcchhhHHHHHhhccccCCCEEEEecCCCCCCcHHHHHHHHHhhcCC
Q 001373 525 RDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDP 596 (1091)
Q Consensus 525 ~d~~~~~lP~lvYvsRekRpg~~hh~KAGalNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp 596 (1091)
+++.|+..++. ..+++|.|.+++. ++|+||+.+|+|.+ ..|++|.+.+..+.++
T Consensus 58 --------~~i~~i~~~~n-----~G~~~arN~gi~~----A~gdyI~flD~Dd~-~~p~~l~~l~~~l~~~ 111 (729)
T 3l7i_A 58 --------KNIRFIDLDEN-----SGHAHARNIALEE----VETPYFMFLDADDE-LASYAITFYLEKFNNT 111 (729)
T ss_dssp ------------------------------------------------------------------------
T ss_pred --------CCEEEEECCCC-----CCHHHHHHHHHHh----ccCCEEEEECCCCC-CChhHHHHHHHHhcCC
Confidence 13555655542 3489999999985 68999999999998 5899999999988755
No 13
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ...
Probab=98.49 E-value=1.5e-07 Score=103.48 Aligned_cols=53 Identities=11% Similarity=-0.065 Sum_probs=40.4
Q ss_pred cchHHHHHHHHHCCcEEEEecCCCCcc----------cccCCCCHHHHHHHHHHHhhcchHHH
Q 001373 790 TEDILTGFKMHCHGWRSVYCIPKRPAF----------KGSAPINLSDRLHQVLRWALGSVEIL 842 (1091)
Q Consensus 790 TEDi~TglrLh~~GWrsvY~~p~~~AF----------~G~aP~tl~~~l~QR~RWA~G~lQil 842 (1091)
.||.++.+|++.+||++.+..+....+ ....|+.+..+.+||.||+.+++..+
T Consensus 201 ~ED~Dl~~Rl~~~G~~i~~~~~~~~~~~~i~H~~~~~~~~n~~~~~~l~~~~~~~~~~Gl~~~ 263 (287)
T 2fy7_A 201 GEDDDIFNRLVFRGMSISRPNAVVGTTRHIRHSRDKKNEPNPQRFDRIAHTKETMLSDGLNSL 263 (287)
T ss_dssp CHHHHHHHHHHHTTCCCBCCCTTTCEEEECC---------CCCCCCCHHHHHHHTTTSSGGGC
T ss_pred cchHHHHHHHHHcCCeEEecCcccceeEEEecCCCcccCCCHHHHHHHhhcccEEcCCCcccC
Confidence 499999999999999887442211111 23478999999999999999999887
No 14
>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A*
Probab=97.89 E-value=4.4e-05 Score=87.34 Aligned_cols=51 Identities=20% Similarity=0.212 Sum_probs=41.5
Q ss_pred CCcchhhHHHHHhhccccCCCEEEEecCCCCCCcHHHHHHHHHhh-cCCCCCcceEEEec
Q 001373 549 HKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFM-MDPTSGKKICYVQF 607 (1091)
Q Consensus 549 h~KAGalNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff-~Dp~~g~~va~VQ~ 607 (1091)
..|++|+|.+++. +.|+||+.+|+|....+|++|.+.+..+ .+| ++.+|..
T Consensus 165 ~G~g~A~n~G~~~----A~gd~i~~lDaD~~~~~p~~L~~l~~~l~~~p----~~d~v~G 216 (387)
T 3f1y_A 165 HGKGDAMWRALSV----TRGDLVLYIDADTRDFRPQLAYGVLGPVLEVP----GVRFVKA 216 (387)
T ss_dssp CSHHHHHHHHTTT----CCSSEEEECCTTCSSCCTHHHHTTHHHHHHST----TCCEEEE
T ss_pred CCHHHHHHHHHHh----cCCCEEEEEcCCCCcCCHHHHHHHHHHHHHCC----CceEEEE
Confidence 3599999999985 6899999999999635899999999866 566 4556655
No 15
>2nxv_A ATP synthase subunits region ORF 6; majastridin, ATPase operon, glycosyl transferase, rossmann F sulphur SAD, transferase; 1.10A {Rhodobacter blasticus} PDB: 2qgi_A*
Probab=97.67 E-value=0.00043 Score=73.63 Aligned_cols=46 Identities=9% Similarity=0.109 Sum_probs=38.6
Q ss_pred chhhHHHHHhhccccCCCEEEEecCCCCCCcHHHHHHHHHhhcC-----CCCCcceEEEe
Q 001373 552 AGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMD-----PTSGKKICYVQ 606 (1091)
Q Consensus 552 AGalNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~D-----p~~g~~va~VQ 606 (1091)
|.|+|.+++. +.|+||+.||.|.++ .+++|.+.+-++.. | +++.|-
T Consensus 63 a~a~N~Gi~~----A~g~yl~fln~D~~~-~~~~l~~l~~~~~~~~~~~~----~vg~vg 113 (249)
T 2nxv_A 63 FSWHKQMLPR----CKGRYVIFCHEDVEL-VDRGYDDLVAAIEALEEADP----KWLVAG 113 (249)
T ss_dssp TTHHHHHGGG----CCSSEEEEEETTEEC-SSCCHHHHHHHHHHHHHHCT----TEEEEE
T ss_pred HHHHHHHHHh----cCCCEEEEECCCccc-CccHHHHHHHHHHhcccCCC----CeeEEe
Confidence 7889999985 689999999999985 88999999988863 7 676653
No 16
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=96.60 E-value=0.0025 Score=57.12 Aligned_cols=53 Identities=30% Similarity=0.845 Sum_probs=43.6
Q ss_pred CccccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhcccc
Q 001373 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRI 91 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Ykr~ 91 (1091)
...|.||-+.+.+ +.-.|.+| .||.-.|+.|+..-.++++..||.|+++|...
T Consensus 11 ~~~CpICle~~~~--~d~~~~p~-~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~ 63 (78)
T 1e4u_A 11 PVECPLCMEPLEI--DDINFFPC-TCGYQICRFCWHRIRTDENGLCPACRKPYPED 63 (78)
T ss_dssp CCBCTTTCCBCCT--TTTTCCSS-TTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSC
T ss_pred CCcCCccCccCcc--cccccccc-CCCCCcCHHHHHHHHhcCCCCCCCCCCccCCC
Confidence 4589999997632 33468889 99999999999877778889999999999653
No 17
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*
Probab=95.68 E-value=0.021 Score=64.48 Aligned_cols=44 Identities=23% Similarity=0.187 Sum_probs=37.6
Q ss_pred CCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCchh
Q 001373 365 LADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAM 413 (1091)
Q Consensus 365 lP~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ 413 (1091)
|+.+-|+|.||| -| . +..++-|+++..++.++..++|+|||...
T Consensus 1 ~~~~pViI~~yN---Rp-~-l~~~L~sL~~~~p~~~~~~iivsdDgs~~ 44 (343)
T 1fo8_A 1 LAVIPILVIACD---RS-T-VRRCLDKLLHYRPSAELFPIIVSQDCGHE 44 (343)
T ss_dssp CCCCCEEEEESS---CT-T-HHHHHHHHHHHCSCTTTSCEEEEECTTCH
T ss_pred CCcccEEEEECC---cH-H-HHHHHHHHHhcCCCcCCcEEEEEECCCCH
Confidence 455779999998 66 6 99999999999977778889999999764
No 18
>2bo4_A Mannosylglycerate synthase; catalysis, glycosyltransferase, mannose, transferase, stereoselectivity; HET: FLC; 1.95A {Rhodothermus marinus} SCOP: c.68.1.18 PDB: 2bo6_A 2bo7_A* 2bo8_A* 2xw2_A 2y4j_A 2xw3_A* 2xw4_A* 2xw5_A* 2y4k_A* 2y4l_A* 2y4m_A*
Probab=93.93 E-value=0.2 Score=57.62 Aligned_cols=46 Identities=15% Similarity=-0.039 Sum_probs=34.4
Q ss_pred CCcchhhHHHHHhhccccCCCEEEEecCCCCCCcHHHHHHHHHhhc
Q 001373 549 HKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMM 594 (1091)
Q Consensus 549 h~KAGalNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~ 594 (1091)
..|.+|+|++++.....++|++|+.+|||-.-.+|+.+.+.+..+.
T Consensus 74 ~GkG~Al~~G~~~Al~~a~gd~vv~mDADlq~~~P~~i~~Ll~~l~ 119 (397)
T 2bo4_A 74 PGKGDGMNTALRYFLEETQWERIHFYDADITSFGPDWITKAEEAAD 119 (397)
T ss_dssp SSHHHHHHHHHHHHHHHCCCSEEEECCTTCSSCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCHHHHHHHHHHHH
Confidence 4699999999922100268999999999984237899998887653
No 19
>2zu9_A Mannosyl-3-phosphoglycerate synthase; GT-A fold, glycosyltransferase, GT55, GDP, cytoplasm, magnesium, transferase; HET: GDP; 2.00A {Pyrococcus horikoshii} PDB: 2zu7_A* 2zu8_A*
Probab=91.54 E-value=0.5 Score=54.36 Aligned_cols=38 Identities=26% Similarity=0.269 Sum_probs=29.7
Q ss_pred CcchhhHHHHHhhccccCCCEEEEecCCCCCCcHHHHHHHH
Q 001373 550 KKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAM 590 (1091)
Q Consensus 550 ~KAGalNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~am 590 (1091)
.|..||-+.+.++. ..++++|+.+|||-+ .|.++.+..
T Consensus 144 GKG~Am~aGl~~A~-~~~gd~Vv~~DaDl~--iP~~v~~~~ 181 (394)
T 2zu9_A 144 GKGEGMLVGLLLAK-AIGAEYVGFVDADNY--IPGAVNEYV 181 (394)
T ss_dssp SHHHHHHHHHHHHH-HTTCSEEEECCSCBS--CHHHHHHHH
T ss_pred ChHHHHHHHHHHHh-hCCCCEEEEEeCCCC--CHHHHHHHH
Confidence 69999999998632 128999999999997 477776544
No 20
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=89.60 E-value=0.31 Score=41.44 Aligned_cols=50 Identities=34% Similarity=0.626 Sum_probs=37.0
Q ss_pred CCccccccCccccccCCCCccccCCCCCC---CcchhhHHHHHhh-cCCCCCCChhhcc
Q 001373 35 SGQICQICGDEIEITDNGEPFVACNECAF---PVCRPCYEYERRE-GNQACPQCKTRYK 89 (1091)
Q Consensus 35 ~~~~C~iCgd~vg~~~~Ge~fvaC~eC~f---pvCrpCyeyerke-G~~~CpqCkt~Yk 89 (1091)
.+..|.||-++ .++++..+| .|.= -|=+.|.+-=.++ |+..||.||++|+
T Consensus 5 ~~~~CrIC~~~----~~~~l~~PC-~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEE----LGNERFRAC-GCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEE----CSCCCCCSC-CCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecC----CCCceecCc-CCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 45689999876 234578888 6743 4557788666654 6899999999996
No 21
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.27 E-value=0.75 Score=41.28 Aligned_cols=54 Identities=26% Similarity=0.554 Sum_probs=39.8
Q ss_pred cCCccccccCccccccCCCCccccCCCCC---CCcchhhHHHHHhh-cCCCCCCChhhccc
Q 001373 34 LSGQICQICGDEIEITDNGEPFVACNECA---FPVCRPCYEYERRE-GNQACPQCKTRYKR 90 (1091)
Q Consensus 34 ~~~~~C~iCgd~vg~~~~Ge~fvaC~eC~---fpvCrpCyeyerke-G~~~CpqCkt~Ykr 90 (1091)
.....|.||-++. ++++.+..+| .|. --+.+.|-+-=.+. ++..||.|++.|.-
T Consensus 13 ~~~~~C~IC~~~~--~~~~~l~~pC-~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 13 SSQDICRICHCEG--DDESPLITPC-HCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp TTSCCCSSSCCCC--CSSSCEECSS-SCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCCeEcCccc--cCCCeeEecc-ccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 4566999998874 3445567788 563 67999999765554 44799999999964
No 22
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.37 E-value=0.46 Score=39.89 Aligned_cols=54 Identities=26% Similarity=0.639 Sum_probs=39.1
Q ss_pred CCccccccCccccccC-CCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhccc
Q 001373 35 SGQICQICGDEIEITD-NGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (1091)
Q Consensus 35 ~~~~C~iCgd~vg~~~-~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Ykr 90 (1091)
....|.||-+...-.. .++..+.- .|+--.|+.|.+--.+. +..||-|++++.+
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 68 (69)
T ss_dssp CCCCCTTTCCCHHHHTTTTCCEEEC-SSSCEEEHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred CCCCCcccCccccccccccCCeEeC-CCCChhcHHHHHHHHHc-CCCCCCCCCccCc
Confidence 4568999999865543 34444433 78889999999654444 6899999998753
No 23
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=85.98 E-value=0.33 Score=41.22 Aligned_cols=55 Identities=25% Similarity=0.614 Sum_probs=39.9
Q ss_pred cCCccccccCccccccC-CCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhccc
Q 001373 34 LSGQICQICGDEIEITD-NGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (1091)
Q Consensus 34 ~~~~~C~iCgd~vg~~~-~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Ykr 90 (1091)
.....|.||-+.+.... +++..+.- .|+--.|+.|.+--.+. +..||.|++++..
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 63 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEEC-TTSCEEEHHHHHHHHHH-CSBCTTTCCBCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeC-CCCChHhHHHHHHHHHc-CCCCCCCCCccCh
Confidence 34568999999876543 45544444 78999999999654443 4799999998853
No 24
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.66 E-value=0.49 Score=39.95 Aligned_cols=48 Identities=19% Similarity=0.486 Sum_probs=37.0
Q ss_pred CccccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhccc
Q 001373 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Ykr 90 (1091)
...|.||.+... ++.+ -.|+--.|+.|.+--.+.++..||.|+++++.
T Consensus 15 ~~~C~IC~~~~~-----~p~~--~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 15 KYKCEKCHLVLC-----SPKQ--TECGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CEECTTTCCEES-----SCCC--CSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred CCCCCCCChHhc-----CeeE--CCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 458999988753 2222 26888899999987776778899999999854
No 25
>2wvl_A Mannosyl-3-phosphoglycerate synthase; GT-A fold, transferase, glycosyltransferase, retaining mecha glucosyl transferase; HET: GDD; 2.81A {Thermus thermophilus} PDB: 2wvk_A* 2wvm_A*
Probab=85.64 E-value=1.9 Score=49.10 Aligned_cols=42 Identities=17% Similarity=0.093 Sum_probs=32.1
Q ss_pred CCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCchhhh
Q 001373 365 LADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLT 415 (1091)
Q Consensus 365 lP~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~lt 415 (1091)
+..+.|+||+|| |.. +++-++++.-|. ...+.|.|||..+-|
T Consensus 52 ~~klSIVVPvYN---Ee~----~lLesVl~qi~~--d~eIIlVdDGS~D~s 93 (391)
T 2wvl_A 52 LEQTAIVVPTRN---ERL----KLLEGVLSGIPH--EALILVASNSSPDRF 93 (391)
T ss_dssp HTTEEEEEEESS---CCH----HHHHHHHHTSCT--TSEEEEEECCCHHHH
T ss_pred HhceEEEEeccC---cHH----HHHHHHHhcCCC--CceEEEEECCCCCCh
Confidence 567899999999 775 356677777664 577999999987644
No 26
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=85.42 E-value=0.61 Score=39.21 Aligned_cols=54 Identities=20% Similarity=0.498 Sum_probs=37.5
Q ss_pred CccccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhcccc
Q 001373 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRI 91 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Ykr~ 91 (1091)
...|.||-+++..+.. ..++.= .||--.|+.|.+--..+++..||.|++++.+.
T Consensus 3 ~~~C~IC~~~~~~~~~-~~~~~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPS-LKLMVN-VCGHTLCESCVDLLFVRGAGNCPECGTPLRKS 56 (65)
T ss_dssp TTCCSTTTTHHHHCSS-CCEEEC-TTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred CCcCCcCCCCccCCCc-cCeecC-CCCCHhHHHHHHHHHHcCCCcCCCCCCccccc
Confidence 3579999884333321 122322 67889999999766567788999999998653
No 27
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=83.98 E-value=1.8 Score=37.47 Aligned_cols=53 Identities=21% Similarity=0.488 Sum_probs=36.6
Q ss_pred cCCccccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhcccc
Q 001373 34 LSGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRI 91 (1091)
Q Consensus 34 ~~~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Ykr~ 91 (1091)
.....|.||-+.+.. ++..+.- .|+--.|+.|.+--.+ .+..||-|++++...
T Consensus 13 ~~~~~C~IC~~~~~~---~~~~~~~-~C~H~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 13 GSGLECPVCKEDYAL---GESVRQL-PCNHLFHDSCIVPWLE-QHDSCPVCRKSLTGQ 65 (78)
T ss_dssp SSSCCCTTTTSCCCT---TSCEEEC-TTSCEEETTTTHHHHT-TTCSCTTTCCCCCCS
T ss_pred CCCCCCeeCCccccC---CCCEEEe-CCCCeecHHHHHHHHH-cCCcCcCcCCccCCc
Confidence 345699999988643 2332222 4788899999964443 458999999998654
No 28
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=83.76 E-value=0.53 Score=40.93 Aligned_cols=47 Identities=15% Similarity=0.284 Sum_probs=37.3
Q ss_pred CccccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhcc
Q 001373 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Yk 89 (1091)
.-.|.||.+... ++.+. .|+.-.|+.|.+--.+.|+..||.|++++.
T Consensus 8 ~~~C~IC~~~~~-----~Pv~~--~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~ 54 (78)
T 1t1h_A 8 YFRCPISLELMK-----DPVIV--STGQTYERSSIQKWLDAGHKTCPKSQETLL 54 (78)
T ss_dssp SSSCTTTSCCCS-----SEEEE--TTTEEEEHHHHHHHHTTTCCBCTTTCCBCS
T ss_pred cCCCCCcccccc-----CCEEc--CCCCeecHHHHHHHHHHCcCCCCCCcCCCC
Confidence 458999987542 24332 699999999998888888999999999874
No 29
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=83.47 E-value=0.35 Score=40.01 Aligned_cols=53 Identities=26% Similarity=0.633 Sum_probs=38.5
Q ss_pred CccccccCccccccC-CCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhccc
Q 001373 36 GQICQICGDEIEITD-NGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~-~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Ykr 90 (1091)
...|.||-+...... +++..+.- .|+--.|+.|.+--.+. +..||.|++++..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 56 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEE-TTSCEEEHHHHHHHHHH-CSBCTTTCCBCTT
T ss_pred CCCCCccChhhhCccccCCCEEeC-CCCCchhHHHHHHHHHc-CCCCCCCCccCCc
Confidence 458999999865543 34444444 78899999999654444 7899999998854
No 30
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=83.30 E-value=0.63 Score=46.50 Aligned_cols=48 Identities=29% Similarity=0.776 Sum_probs=38.1
Q ss_pred ccccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhccc
Q 001373 37 QICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (1091)
Q Consensus 37 ~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Ykr 90 (1091)
..|.||-+... ++ |.+..|+--.|+.|.+--.+.++..||.|++++..
T Consensus 55 ~~C~IC~~~~~-----~p-~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 55 LMCPICLDMLK-----NT-MTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HBCTTTSSBCS-----SE-EEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCcccChHhh-----Cc-CEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 38999988753 13 33347899999999988888888999999999854
No 31
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.69 E-value=0.63 Score=41.75 Aligned_cols=60 Identities=22% Similarity=0.447 Sum_probs=44.3
Q ss_pred cccCCceEEEeecccccccccccccCCccccccCccccccCCCCccccCCCCCCCcchhhHHHH
Q 001373 10 GSHNRNEFVLINADEVARVTSVKELSGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYE 73 (1091)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeye 73 (1091)
||.-.|||..++.-+. ..+..+-+...|..|+...|+- +.--+.|..|...||+.|-.+.
T Consensus 1 ~~~~~~eL~elrrkga--k~~s~~~~~r~CarC~~~LG~l--~~~g~~C~~Ck~rVC~~Crv~~ 60 (76)
T 2csz_A 1 GSSGSSGLLEIKRKGA--KRGSQHYSDRTCARCQESLGRL--SPKTNTCRGCNHLVCRDCRIQE 60 (76)
T ss_dssp CCCCCCCCCCCCCCCS--CSCCTTCCCCBCSSSCCBCSSS--CTTTSEETTTTEECCTTSEEEC
T ss_pred CchhHHHHHHHHHccc--cCcCcCCCccchhhhCcccccc--ccCCCcCcccChhhcccccccC
Confidence 4555899988885432 1223456667999999999986 4445789999999999997654
No 32
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=81.02 E-value=1.4 Score=35.51 Aligned_cols=49 Identities=24% Similarity=0.518 Sum_probs=34.4
Q ss_pred CccccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhc
Q 001373 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRY 88 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Y 88 (1091)
...|.||-+++.. |+..+....|+--.|+.|.+--. ..+..||-|++++
T Consensus 5 ~~~C~IC~~~~~~---~~~~~~~~~C~H~f~~~Ci~~w~-~~~~~CP~Cr~~~ 53 (55)
T 1iym_A 5 GVECAVCLAELED---GEEARFLPRCGHGFHAECVDMWL-GSHSTCPLCRLTV 53 (55)
T ss_dssp SCCCTTTCCCCCT---TSCCEECSSSCCEECTTHHHHTT-TTCCSCSSSCCCS
T ss_pred CCcCccCCccccC---CCceEECCCCCCcccHHHHHHHH-HcCCcCcCCCCEe
Confidence 4589999988643 33334343578889999994333 4478999999865
No 33
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.72 E-value=0.9 Score=38.77 Aligned_cols=48 Identities=31% Similarity=0.715 Sum_probs=36.0
Q ss_pred CccccccCccccccCCCCccccCCCCCCCcchhhHHHHHh--hcCCCCCCChhhccc
Q 001373 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERR--EGNQACPQCKTRYKR 90 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerk--eG~~~CpqCkt~Ykr 90 (1091)
...|.||-+... ++.+ . .|+--.|+.|.+--.+ .++..||.|++++..
T Consensus 20 ~~~C~IC~~~~~-----~~~~-~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 20 EVICPICLDILQ-----KPVT-I-DCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCBCTTTCSBCS-----SEEE-C-TTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred CCEeccCCcccC-----CeEE-c-CCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 458999998754 2322 2 6899999999976555 366799999999864
No 34
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=80.68 E-value=1.3 Score=35.49 Aligned_cols=50 Identities=28% Similarity=0.583 Sum_probs=35.3
Q ss_pred CCccccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhc
Q 001373 35 SGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRY 88 (1091)
Q Consensus 35 ~~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Y 88 (1091)
....|.||-+.+... ++. +..-.|+--.|+.|.+--.+.. ..||-|++++
T Consensus 4 ~~~~C~IC~~~~~~~--~~~-~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~ 53 (55)
T 2ecm_A 4 GSSGCPICLEDIHTS--RVV-AHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPS 53 (55)
T ss_dssp CCCSCTTTCCCCCTT--TSC-EEECTTSCEEETTHHHHHHHHT-CCCTTSCCSS
T ss_pred CCCcCcccChhhcCC--CcC-eEecCCCCcccHHHHHHHHHcC-CcCCCCCCcC
Confidence 356899999986422 222 2333578899999997655555 8999999765
No 35
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=79.64 E-value=1.1 Score=42.62 Aligned_cols=47 Identities=26% Similarity=0.648 Sum_probs=35.9
Q ss_pred ccccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhccc
Q 001373 37 QICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (1091)
Q Consensus 37 ~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Ykr 90 (1091)
-.|.||-+..- ++.+ - .|+--.|+.|.+--.+.++..||.|++++..
T Consensus 53 ~~C~IC~~~~~-----~p~~-~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 53 FQCICCQELVF-----RPIT-T-VCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp TBCTTTSSBCS-----SEEE-C-TTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCcCChHHc-----CcEE-e-eCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 47999998754 2322 2 6899999999977666666799999999854
No 36
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=79.55 E-value=1.8 Score=36.35 Aligned_cols=49 Identities=24% Similarity=0.548 Sum_probs=34.4
Q ss_pred CccccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhcccc
Q 001373 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRI 91 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Ykr~ 91 (1091)
...|.||-+... +..... .|+--.|+.|.+--. +.+..||.|+++....
T Consensus 5 ~~~C~IC~~~~~---~~~~~~---~C~H~fc~~Ci~~~~-~~~~~CP~Cr~~~~~~ 53 (68)
T 1chc_A 5 AERCPICLEDPS---NYSMAL---PCLHAFCYVCITRWI-RQNPTCPLCKVPVESV 53 (68)
T ss_dssp CCCCSSCCSCCC---SCEEET---TTTEEESTTHHHHHH-HHSCSTTTTCCCCCCE
T ss_pred CCCCeeCCcccc---CCcEec---CCCCeeHHHHHHHHH-hCcCcCcCCChhhHhh
Confidence 458999998853 111233 478889999996544 3458999999998644
No 37
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=78.86 E-value=1.6 Score=40.61 Aligned_cols=59 Identities=22% Similarity=0.471 Sum_probs=40.6
Q ss_pred CCccccccCccccccC-----------CCCccccCCCCCCCcchhhHHHHHh----hcCCCCCCChhhcccccC
Q 001373 35 SGQICQICGDEIEITD-----------NGEPFVACNECAFPVCRPCYEYERR----EGNQACPQCKTRYKRIKG 93 (1091)
Q Consensus 35 ~~~~C~iCgd~vg~~~-----------~Ge~fvaC~eC~fpvCrpCyeyerk----eG~~~CpqCkt~Ykr~kg 93 (1091)
....|.||-+.+...+ +-...+..-.|+=-.|+.|.+--.+ +++..||-|++.|...+|
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~g 97 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTG 97 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCCC
Confidence 3458999998865432 1112333446788899999975554 456799999999966544
No 38
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.91 E-value=2.1 Score=37.70 Aligned_cols=52 Identities=21% Similarity=0.423 Sum_probs=36.9
Q ss_pred CccccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhc--CCCCCCChhhccc
Q 001373 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREG--NQACPQCKTRYKR 90 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG--~~~CpqCkt~Ykr 90 (1091)
...|.||-+....+ ....+.- .|+--.|+.|.+--.+.. ...||.|+++++.
T Consensus 15 ~~~C~IC~~~~~~~--~~~~~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 15 VLECPICMESFTEE--QLRPKLL-HCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CCBCTTTCCBCCTT--SSCEEEC-SSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred CCCCccCCcccccc--CCCeEEC-CCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 45899999875432 2223333 689999999997655543 6899999998854
No 39
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=76.64 E-value=1.4 Score=45.47 Aligned_cols=47 Identities=13% Similarity=0.011 Sum_probs=36.2
Q ss_pred CccccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhcc
Q 001373 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Yk 89 (1091)
.-+|.||++- +. ++.+. .||.-.||.|-+--.+++...||.|++++.
T Consensus 106 ~f~CPI~~el-m~----DPV~~--~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~ 152 (179)
T 2f42_A 106 YLCGKISFEL-MR----EPCIT--PSGITYDRKDIEEHLQRVGHFDPVTRSPLT 152 (179)
T ss_dssp GGBCTTTCSB-CS----SEEEC--TTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred hhcccCcccc-CC----CCeEC--CCCCEECHHHHHHHHHhCCCCCCCCcCCCC
Confidence 4589999864 33 46666 499999999998777664457999999884
No 40
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.46 E-value=2.5 Score=36.63 Aligned_cols=48 Identities=25% Similarity=0.836 Sum_probs=35.1
Q ss_pred CccccccCccccccCCCCccccCCCCCCCcchhhHHHHHh-----hcCCCCCCChhhccc
Q 001373 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERR-----EGNQACPQCKTRYKR 90 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerk-----eG~~~CpqCkt~Ykr 90 (1091)
...|.||-+...- + +.. .|+-..|+.|.+--.+ .++..||.|++++..
T Consensus 19 ~~~C~IC~~~~~~-----p-~~~-~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 19 EVTCPICLELLTQ-----P-LSL-DCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCTTTCSCCSS-----C-BCC-SSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred CCCCCCCCcccCC-----c-eeC-CCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 4589999987531 2 222 5888999999965433 357899999999854
No 41
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=75.99 E-value=1.5 Score=46.52 Aligned_cols=48 Identities=13% Similarity=0.065 Sum_probs=36.7
Q ss_pred CCccccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhcc
Q 001373 35 SGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1091)
Q Consensus 35 ~~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Yk 89 (1091)
..-.|.||.+-. -++.+. .||.-.||.|-+--.+++...||.|+++..
T Consensus 207 ~~~~c~i~~~~~-----~dPv~~--~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~ 254 (281)
T 2c2l_A 207 DYLCGKISFELM-----REPCIT--PSGITYDRKDIEEHLQRVGHFNPVTRSPLT 254 (281)
T ss_dssp STTBCTTTCSBC-----SSEEEC--SSCCEEETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred cccCCcCcCCHh-----cCCeEC--CCCCEECHHHHHHHHHHCCCCCcCCCCCCc
Confidence 455899998652 234443 489999999998877777677999999884
No 42
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=74.96 E-value=2.6 Score=36.52 Aligned_cols=48 Identities=29% Similarity=0.802 Sum_probs=35.1
Q ss_pred CccccccCccccccCCCCccccCCCCCCCcchhhHHHHHhh-----cCCCCCCChhhccc
Q 001373 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERRE-----GNQACPQCKTRYKR 90 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerke-----G~~~CpqCkt~Ykr 90 (1091)
...|.||-+.... + +.. .|+--.|+.|.+--.+. ++..||.|++++..
T Consensus 19 ~~~C~IC~~~~~~-----p-~~~-~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 19 EVTCPICLELLKE-----P-VSA-DCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp TTSCTTTCSCCSS-----C-EEC-TTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred CCCCcCCChhhCc-----c-eeC-CCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 4589999887532 1 123 47888999999765554 47899999998853
No 43
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=73.96 E-value=3 Score=35.21 Aligned_cols=52 Identities=23% Similarity=0.490 Sum_probs=35.8
Q ss_pred CCccccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhcccc
Q 001373 35 SGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRI 91 (1091)
Q Consensus 35 ~~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Ykr~ 91 (1091)
....|.||-+.+. +++..+.- .|+--.|+.|..--.+. +..||-|+++....
T Consensus 13 ~~~~C~IC~~~~~---~~~~~~~~-~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 13 TEEKCTICLSILE---EGEDVRRL-PCMHLFHQVCVDQWLIT-NKKCPICRVDIEAQ 64 (69)
T ss_dssp CCCSBTTTTBCCC---SSSCEEEC-TTSCEEEHHHHHHHHHH-CSBCTTTCSBSCSC
T ss_pred CCCCCeeCCcccc---CCCcEEEe-CCCCHHHHHHHHHHHHc-CCCCcCcCccccCc
Confidence 4568999998764 23333333 57888899999544333 56799999988553
No 44
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=73.08 E-value=2.3 Score=39.00 Aligned_cols=48 Identities=23% Similarity=0.564 Sum_probs=37.9
Q ss_pred CccccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhcc
Q 001373 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Yk 89 (1091)
.-.|.||-+..- .-|.|-.|+--.|+.|..--.+..+..||.|++++.
T Consensus 22 ~~~C~IC~~~~~------~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (100)
T 3lrq_A 22 VFRCFICMEKLR------DARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQ 69 (100)
T ss_dssp HTBCTTTCSBCS------SEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCccCCcccc------CccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCC
Confidence 348999998863 235556899999999997666666679999999984
No 45
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.69 E-value=5.9 Score=33.82 Aligned_cols=49 Identities=20% Similarity=0.510 Sum_probs=35.2
Q ss_pred CccccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhcccc
Q 001373 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRI 91 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Ykr~ 91 (1091)
...|.||-+...- +. ....|+--.|+.|.+--.+. +..||.|+++++..
T Consensus 15 ~~~C~IC~~~~~~-----p~-~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 15 YILCSICKGYLID-----AT-TITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQT 63 (72)
T ss_dssp GGSCTTTSSCCSS-----CE-ECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCSS
T ss_pred CCCCCCCChHHHC-----cC-EECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCcc
Confidence 4589999876432 22 22357888899999665544 68999999998654
No 46
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.52 E-value=2 Score=36.35 Aligned_cols=48 Identities=23% Similarity=0.614 Sum_probs=35.0
Q ss_pred CCccccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhcccc
Q 001373 35 SGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRI 91 (1091)
Q Consensus 35 ~~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Ykr~ 91 (1091)
....|.||-+.... ...+ |+--.|+.|.+- .-..+..||.|+++....
T Consensus 14 ~~~~C~IC~~~~~~-----~~~~---CgH~fc~~Ci~~-~~~~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 14 DEEECCICMDGRAD-----LILP---CAHSFCQKCIDK-WSDRHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCCSSSCCSCCS-----EEET---TTEEECHHHHHH-SSCCCSSCHHHHHCTTCC
T ss_pred CCCCCeeCCcCccC-----cccC---CCCcccHHHHHH-HHHCcCcCCCcCCcccCC
Confidence 34589999887432 4444 577789999953 344789999999998654
No 47
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=69.50 E-value=1.8 Score=40.70 Aligned_cols=29 Identities=28% Similarity=0.758 Sum_probs=25.3
Q ss_pred CCcchhhHHHHHhhcCCCCCCChhhcccc
Q 001373 63 FPVCRPCYEYERREGNQACPQCKTRYKRI 91 (1091)
Q Consensus 63 fpvCrpCyeyerkeG~~~CpqCkt~Ykr~ 91 (1091)
=-.|-.|++.-.+++++.||.|+.+.-|.
T Consensus 22 HvFCydCa~~~~~~~~k~Cp~C~~~V~rV 50 (101)
T 3vk6_A 22 HVFCYDCAILHEKKGDKMCPGCSDPVQRI 50 (101)
T ss_dssp CEEEHHHHHHHHHTTCCBCTTTCCBCSEE
T ss_pred ccHHHHHHHHHHhccCCCCcCcCCeeeee
Confidence 35699999887889999999999999776
No 48
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=69.39 E-value=1.3 Score=46.50 Aligned_cols=29 Identities=34% Similarity=0.669 Sum_probs=23.0
Q ss_pred cCCccccccCcccccc----CCCCccccCCCCCCCcchhhHHH
Q 001373 34 LSGQICQICGDEIEIT----DNGEPFVACNECAFPVCRPCYEY 72 (1091)
Q Consensus 34 ~~~~~C~iCgd~vg~~----~~Ge~fvaC~eC~fpvCrpCyey 72 (1091)
.+.-+|++||+.|+-+ .||+ +||++|++.
T Consensus 170 ~~~~~C~~CGE~~~~~~~~~~~g~----------~~C~~C~~~ 202 (204)
T 2gvi_A 170 GAKVRCDVCGEYTYEADAKLLNGK----------PVCKPDYYG 202 (204)
T ss_dssp CCEEECTTTCCEEEGGGCEEETTE----------EECHHHHHC
T ss_pred CCceECCCCCCchhhcceeeeCCc----------EEChhhhcc
Confidence 4466999999998875 4665 799999964
No 49
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=68.00 E-value=2.9 Score=39.39 Aligned_cols=47 Identities=23% Similarity=0.524 Sum_probs=36.3
Q ss_pred ccccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhccc
Q 001373 37 QICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (1091)
Q Consensus 37 ~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Ykr 90 (1091)
-.|.||.+..- ++ |.. .|+--.|+.|.+--.+.++..||.|+++...
T Consensus 19 ~~C~IC~~~~~-----~p-~~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 19 YECPICLMALR-----EA-VQT-PCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp GBCTTTCSBCS-----SE-EEC-TTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCcCChhhc-----Ce-EEC-CcCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 48999997753 22 334 6899999999987777776799999988754
No 50
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=67.26 E-value=3.5 Score=37.43 Aligned_cols=48 Identities=21% Similarity=0.479 Sum_probs=34.6
Q ss_pred CccccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhccc
Q 001373 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Ykr 90 (1091)
...|.||-+...- +.+ ...|+--.|+.|.+--.+ .+..||.|++++..
T Consensus 22 ~~~C~IC~~~~~~-----p~~-~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 22 LLRCGICFEYFNI-----AMI-IPQCSHNYCSLCIRKFLS-YKTQCPTCCVTVTE 69 (99)
T ss_dssp HTBCTTTCSBCSS-----EEE-CTTTCCEEEHHHHHHHHT-TCCBCTTTCCBCCG
T ss_pred CCCcccCChhhCC-----cCE-ECCCCCHhhHHHHHHHHH-CCCCCCCCCCcCCh
Confidence 3589999887531 322 236899999999965544 45899999998854
No 51
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.25 E-value=4.5 Score=34.53 Aligned_cols=51 Identities=18% Similarity=0.549 Sum_probs=35.8
Q ss_pred CccccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhcccc
Q 001373 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRI 91 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Ykr~ 91 (1091)
...|.||-+.+.. ++..+.. .|+-..|+.|..--.+. +..||-|++++...
T Consensus 15 ~~~C~IC~~~~~~---~~~~~~~-~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 15 HELCAVCLEDFKP---RDELGIC-PCKHAFHRKCLIKWLEV-RKVCPLCNMPVLQL 65 (74)
T ss_dssp SCBCSSSCCBCCS---SSCEEEE-TTTEEEEHHHHHHHHHH-CSBCTTTCCBCSSC
T ss_pred CCCCcCCCcccCC---CCcEEEc-CCCCEecHHHHHHHHHc-CCcCCCcCcccccc
Confidence 5589999998543 3333333 47888999999644444 46999999988543
No 52
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=66.96 E-value=3.2 Score=37.24 Aligned_cols=46 Identities=7% Similarity=-0.094 Sum_probs=34.7
Q ss_pred CccccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhcc
Q 001373 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Yk 89 (1091)
.-.|.||++- +. ++.+. .||.-.||.|-+--.+ ++..||.|++++.
T Consensus 14 ~~~CpI~~~~-m~----dPV~~--~cGhtf~r~~I~~~l~-~~~~cP~~~~~l~ 59 (85)
T 2kr4_A 14 EFRDPLMDTL-MT----DPVRL--PSGTVMDRSIILRHLL-NSPTDPFNRQMLT 59 (85)
T ss_dssp TTBCTTTCSB-CS----SEEEC--TTSCEEEHHHHHHHHH-HCSBCTTTCCBCC
T ss_pred heECcccCch-hc----CCeEC--CCCCEECHHHHHHHHh-cCCCCCCCcCCCC
Confidence 4589999864 33 24443 3899999999977766 4789999998874
No 53
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.14 E-value=4.3 Score=34.58 Aligned_cols=49 Identities=18% Similarity=0.402 Sum_probs=34.4
Q ss_pred cCCccccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhccc
Q 001373 34 LSGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (1091)
Q Consensus 34 ~~~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Ykr 90 (1091)
.....|.||-+.+... ..+ .|+--.|+.|.+--.+. +..||.|++++..
T Consensus 13 ~~~~~C~IC~~~~~~~----~~~---~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 13 LTVPECAICLQTCVHP----VSL---PCKHVFCYLCVKGASWL-GKRCALCRQEIPE 61 (71)
T ss_dssp SSCCBCSSSSSBCSSE----EEE---TTTEEEEHHHHHHCTTC-SSBCSSSCCBCCH
T ss_pred CCCCCCccCCcccCCC----EEc---cCCCHHHHHHHHHHHHC-CCcCcCcCchhCH
Confidence 4456899999875211 233 47888999999543333 4899999999864
No 54
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=66.00 E-value=7.3 Score=33.53 Aligned_cols=50 Identities=24% Similarity=0.567 Sum_probs=35.4
Q ss_pred CccccccCccccccCCCCccccCCCCCCCcchhhHHHHHhh-cCCCCCCChhhcccc
Q 001373 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERRE-GNQACPQCKTRYKRI 91 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerke-G~~~CpqCkt~Ykr~ 91 (1091)
...|.||-+..- ++.+ -..|+--.|+.|.+--.++ +...||.|++++.+.
T Consensus 15 ~~~C~IC~~~~~-----~p~~-~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2yur_A 15 ELLCLICKDIMT-----DAVV-IPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSP 65 (74)
T ss_dssp GGSCSSSCCCCT-----TCEE-CSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCT
T ss_pred CCCCcCCChHHh-----CCeE-cCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCc
Confidence 458999977643 2322 3348999999999766554 457999999976543
No 55
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=64.84 E-value=3.9 Score=40.53 Aligned_cols=47 Identities=23% Similarity=0.685 Sum_probs=35.7
Q ss_pred ccccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhccc
Q 001373 37 QICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (1091)
Q Consensus 37 ~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Ykr 90 (1091)
..|.||-+..- ++.+ . .|+--.|+.|.+--.+.++..||.|++++..
T Consensus 79 ~~C~IC~~~~~-----~pv~-~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 79 FMCVCCQELVY-----QPVT-T-ECFHNVCKDCLQRSFKAQVFSCPACRHDLGQ 125 (150)
T ss_dssp TBCTTTSSBCS-----SEEE-C-TTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CEeecCChhhc-----CCEE-c-CCCCchhHHHHHHHHHhCCCcCCCCCccCCC
Confidence 48999988642 2322 2 6888899999977777776799999999854
No 56
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=64.65 E-value=3 Score=35.94 Aligned_cols=52 Identities=17% Similarity=0.448 Sum_probs=36.0
Q ss_pred CCccccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhcccc
Q 001373 35 SGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRI 91 (1091)
Q Consensus 35 ~~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Ykr~ 91 (1091)
....|.||-+++.. ++..+.- .|+--.|+.|.+--.+ .+..||-|++++...
T Consensus 22 ~~~~C~IC~~~~~~---~~~~~~l-~C~H~fh~~Ci~~w~~-~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 22 EQTLCVVCMCDFES---RQLLRVL-PCNHEFHAKCVDKWLK-ANRTCPICRADSGPS 73 (75)
T ss_dssp SCCEETTTTEECCB---TCEEEEE-TTTEEEETTHHHHHHH-HCSSCTTTCCCCCCC
T ss_pred CCCCCeECCcccCC---CCeEEEE-CCCCHhHHHHHHHHHH-cCCcCcCcCCcCCCC
Confidence 45689999988643 3333222 4777899999964444 357999999887544
No 57
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=64.30 E-value=0.73 Score=46.47 Aligned_cols=51 Identities=22% Similarity=0.494 Sum_probs=42.2
Q ss_pred CCccccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhh
Q 001373 35 SGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTR 87 (1091)
Q Consensus 35 ~~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~ 87 (1091)
+...|.+|+...|+- +..-+.|..|...||+.|-.|-++++.=.|--|-..
T Consensus 67 ~~~~C~~C~~~fg~l--~~~g~~C~~C~~~VC~~C~~~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLL--LNSRRQCLECSLFVCKSCSHAHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGC--SSCCEECTTTCCEECGGGEECCSSSSSCEEHHHHHH
T ss_pred CCccchhhcCccccc--cCCCCcCCCCCchhhcccccccCCCCcEeeHHHHHH
Confidence 567999999998876 334688999999999999988888887888777543
No 58
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=64.14 E-value=1.5 Score=40.95 Aligned_cols=48 Identities=27% Similarity=0.784 Sum_probs=36.2
Q ss_pred CccccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhccc
Q 001373 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Ykr 90 (1091)
.-.|.||-+..- ++.+- .|+--.|+.|.+--.+.++..||.|++++..
T Consensus 15 ~~~C~iC~~~~~-----~p~~~--~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 15 ECQCGICMEILV-----EPVTL--PCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHBCTTTCSBCS-----SCEEC--TTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCccCCcccC-----ceeEc--CCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 448999998753 23222 6899999999965566677899999999864
No 59
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=64.03 E-value=3 Score=38.70 Aligned_cols=46 Identities=7% Similarity=-0.089 Sum_probs=34.7
Q ss_pred CccccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhcc
Q 001373 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Yk 89 (1091)
.-.|.||++- +. ++.+. .||.-.||.|-+--.+ ++..||.|+.++.
T Consensus 29 ~~~CpI~~~~-m~----dPV~~--~cGhtf~r~~I~~~l~-~~~~cP~~~~~l~ 74 (100)
T 2kre_A 29 EFRDPLMDTL-MT----DPVRL--PSGTIMDRSIILRHLL-NSPTDPFNRQTLT 74 (100)
T ss_dssp TTBCTTTCSB-CS----SEEEE--TTTEEEEHHHHHHHTT-SCSBCSSSCCBCC
T ss_pred hhCCcCccCc-cc----CCeEC--CCCCEEchHHHHHHHH-cCCCCCCCCCCCC
Confidence 4589999764 33 35443 3899999999977665 5789999999873
No 60
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=63.27 E-value=5.6 Score=36.52 Aligned_cols=48 Identities=29% Similarity=0.638 Sum_probs=34.1
Q ss_pred CccccccCccccccCCCCccccCCCCCCCcchhhHHHHHh--hcCCCCCCChhhccc
Q 001373 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERR--EGNQACPQCKTRYKR 90 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerk--eG~~~CpqCkt~Ykr 90 (1091)
...|.||-+..- ++.+ . .|+--.|+.|.+--.+ .+...||.|++++..
T Consensus 21 ~~~C~IC~~~~~-----~p~~-~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 21 ILECPICLELIK-----EPVS-T-KCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HTSCSSSCCCCS-----SCCB-C-TTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCCcccChhhc-----CeEE-C-CCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 348999988652 1222 2 6888999999976554 344689999998754
No 61
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=62.43 E-value=3.6 Score=37.07 Aligned_cols=49 Identities=22% Similarity=0.568 Sum_probs=34.9
Q ss_pred CCccccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhc
Q 001373 35 SGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRY 88 (1091)
Q Consensus 35 ~~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Y 88 (1091)
....|.||-++.. +|+..+.. .|+=-.|+.|..-- -..+..||-|+.++
T Consensus 39 ~~~~C~IC~~~~~---~~~~~~~l-~C~H~Fh~~Ci~~w-l~~~~~CP~Cr~~~ 87 (91)
T 2l0b_A 39 QEMCCPICCSEYV---KGDVATEL-PCHHYFHKPCVSIW-LQKSGTCPVCRCMF 87 (91)
T ss_dssp SCSEETTTTEECC---TTCEEEEE-TTTEEEEHHHHHHH-HTTTCBCTTTCCBS
T ss_pred CCCCCcccChhhc---CCCcEEec-CCCChHHHHHHHHH-HHcCCcCcCcCccC
Confidence 3458999998864 34444444 37888999998543 34567999999876
No 62
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.42 E-value=8.8 Score=33.39 Aligned_cols=46 Identities=24% Similarity=0.515 Sum_probs=34.0
Q ss_pred CccccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhcc
Q 001373 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Yk 89 (1091)
...|.||-+..-- +.+ -.|+--.|+.|..--.+ .+..||.|++++.
T Consensus 15 ~~~C~IC~~~~~~-----p~~--~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 15 PFRCFICRQAFQN-----PVV--TKCRHYFCESCALEHFR-ATPRCYICDQPTG 60 (81)
T ss_dssp CSBCSSSCSBCCS-----EEE--CTTSCEEEHHHHHHHHH-HCSBCSSSCCBCC
T ss_pred CCCCcCCCchhcC-----eeE--ccCCCHhHHHHHHHHHH-CCCcCCCcCcccc
Confidence 4589999887621 322 26788889999965554 4689999999884
No 63
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=61.79 E-value=3.1 Score=41.01 Aligned_cols=37 Identities=24% Similarity=0.644 Sum_probs=29.8
Q ss_pred ccCCccccccCccccccC-CCCccccCCCCCCCcchhhHHH
Q 001373 33 ELSGQICQICGDEIEITD-NGEPFVACNECAFPVCRPCYEY 72 (1091)
Q Consensus 33 ~~~~~~C~iCgd~vg~~~-~Ge~fvaC~eC~fpvCrpCyey 72 (1091)
+.+...|.+|+...|+-. .| +.|..|...||+.|-.+
T Consensus 52 ~~~~~~C~~C~~~~g~l~~~g---~~C~~C~~~VC~~C~~~ 89 (134)
T 1zbd_B 52 GDGVNRCILCGEQLGMLGSAS---VVCEDCKKNVCTKCGVE 89 (134)
T ss_dssp SCSSSBCSSSCCBCSTTSCCE---EECTTTCCEEETTSEEE
T ss_pred cCCCccccccCCCcccccCCC---CCCCCCCcccccccCCc
Confidence 345679999999997543 34 78999999999999754
No 64
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.93 E-value=7.2 Score=32.21 Aligned_cols=42 Identities=31% Similarity=0.762 Sum_probs=31.3
Q ss_pred CccccccCccccccCCCCccccCCCCCCCcchhhHHHHHhh--cCCCCCCC
Q 001373 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERRE--GNQACPQC 84 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerke--G~~~CpqC 84 (1091)
...|.||-+..- ++.+ - .|+--.|+.|.+--.+. ++..||.|
T Consensus 20 ~~~C~IC~~~~~-----~p~~-~-~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 20 EVICPICLDILQ-----KPVT-I-DCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCBCTTTCSBCS-----SCEE-C-TTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CCCCCcCCchhC-----CeEE-e-CCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 458999998753 2323 2 68999999999766654 66789988
No 65
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.89 E-value=5.3 Score=35.24 Aligned_cols=56 Identities=20% Similarity=0.436 Sum_probs=38.0
Q ss_pred CCccccccCcccccc--------CCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhcccc
Q 001373 35 SGQICQICGDEIEIT--------DNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRI 91 (1091)
Q Consensus 35 ~~~~C~iCgd~vg~~--------~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Ykr~ 91 (1091)
....|.||-+++.-. .+++..+.-..|+=--|+.|.+-=. +.++.||-|++++...
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl-~~~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWV-KQNNRCPLCQQDWVVQ 77 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHT-TTCCBCTTTCCBCCEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHH-HhCCCCCCcCCCcchh
Confidence 455899999987542 2344333333688889999985433 3457999999988543
No 66
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=59.96 E-value=5.8 Score=37.03 Aligned_cols=48 Identities=25% Similarity=0.552 Sum_probs=36.9
Q ss_pred CccccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhccc
Q 001373 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Ykr 90 (1091)
.-.|.||-+..- ++.+ . .|+--.|+.|.+--.+.++..||.|++++..
T Consensus 23 ~~~C~IC~~~~~-----~p~~-~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 23 SISCQICEHILA-----DPVE-T-SCKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HTBCTTTCSBCS-----SEEE-C-TTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCCcHhc-----CcEE-c-CCCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 458999988752 2323 3 6899999999977777767899999999854
No 67
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=59.93 E-value=4.6 Score=40.29 Aligned_cols=47 Identities=23% Similarity=0.524 Sum_probs=37.6
Q ss_pred ccccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhccc
Q 001373 37 QICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (1091)
Q Consensus 37 ~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Ykr 90 (1091)
-.|.||.+..- ++ |.+ .|+--.|+.|.+--.+.++..||.|++++..
T Consensus 19 ~~C~IC~~~~~-----~p-v~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 19 YECPICLMALR-----EA-VQT-PCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp GBCTTTCSBCS-----SE-EEC-TTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCChhhc-----Cc-EEC-CCCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 48999998743 23 446 7999999999988877777899999988754
No 68
>3d00_A Tungsten formylmethanofuran dehydrogenase subunit; FWDE/GAPDH domain-like fold, structural genomics, joint CENT structural genomics; HET: MSE; 1.90A {Syntrophus aciditrophicus}
Probab=59.54 E-value=4.2 Score=42.30 Aligned_cols=26 Identities=15% Similarity=0.355 Sum_probs=21.6
Q ss_pred cCCccccccCccccccCCCCccccCCCCCCCcchhhHH
Q 001373 34 LSGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYE 71 (1091)
Q Consensus 34 ~~~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCye 71 (1091)
...-+|++||+.|+-. +=++|++|++
T Consensus 161 ~~~~~C~~CGE~~~~~------------g~~~C~~C~~ 186 (191)
T 3d00_A 161 GKIVLCPQCREAYPAQ------------DGELCLSCQG 186 (191)
T ss_dssp CCEEECTTTCCEEEGG------------GCSSCHHHHT
T ss_pred cCCEECCcCCCChhhC------------CCcCCccccC
Confidence 4677999999998866 5589999984
No 69
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=58.19 E-value=5.9 Score=35.27 Aligned_cols=48 Identities=23% Similarity=0.587 Sum_probs=34.4
Q ss_pred CccccccCccccccCCCCccccCCCCCCCcchhhHHHHHh-hcCCCCCCChhhcc
Q 001373 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERR-EGNQACPQCKTRYK 89 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerk-eG~~~CpqCkt~Yk 89 (1091)
.-.|.||.+..- ++.+ ...|+--.|+.|.+--.+ .++..||.|++++.
T Consensus 13 ~~~C~IC~~~~~-----~p~~-~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 13 ELLCLICKDIMT-----DAVV-IPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp TTEETTTTEECS-----SCEE-CTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CCCCCCCChhhc-----CceE-CCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 458999997643 2322 223899999999975554 35579999999873
No 70
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=58.09 E-value=5.3 Score=36.88 Aligned_cols=48 Identities=21% Similarity=0.606 Sum_probs=34.8
Q ss_pred CccccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhccc
Q 001373 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Ykr 90 (1091)
.-.|.||.+..- ++.+ ...|+--.|+.|.+--.+. +..||.|++++..
T Consensus 15 ~~~C~IC~~~~~-----~p~~-~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 15 HLMCVLCGGYFI-----DATT-IIECLHSFCKTCIVRYLET-SKYCPICDVQVHK 62 (108)
T ss_dssp GTBCTTTSSBCS-----SEEE-ETTTCCEEEHHHHHHHHTS-CSBCTTTCCBSCS
T ss_pred cCCCccCChHHh-----CcCE-eCCCCChhhHHHHHHHHHh-CCcCcCCCccccc
Confidence 448999988752 2322 2368889999999655554 4899999998854
No 71
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=57.84 E-value=4.9 Score=49.92 Aligned_cols=58 Identities=29% Similarity=0.754 Sum_probs=42.7
Q ss_pred cCCccccccCccccccCC---CCccccCCCCC--------------------CCcchhhHH-HH----Hh--hcCCCCCC
Q 001373 34 LSGQICQICGDEIEITDN---GEPFVACNECA--------------------FPVCRPCYE-YE----RR--EGNQACPQ 83 (1091)
Q Consensus 34 ~~~~~C~iCgd~vg~~~~---Ge~fvaC~eC~--------------------fpvCrpCye-ye----rk--eG~~~Cpq 83 (1091)
..-.+|.-|=.++---.| .-+|+.|..|| ||.|..|.+ |+ |+ ----+||.
T Consensus 109 pD~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhAqp~aC~~ 188 (761)
T 3vth_A 109 PDMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVACFD 188 (761)
T ss_dssp CCBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTCTTCCCTT
T ss_pred CCccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccCCCCcCCc
Confidence 455689999988753332 56899999998 999999973 44 33 12258999
Q ss_pred Chhhcccc
Q 001373 84 CKTRYKRI 91 (1091)
Q Consensus 84 Ckt~Ykr~ 91 (1091)
|+=++.-.
T Consensus 189 CGP~l~l~ 196 (761)
T 3vth_A 189 CGPSLSFV 196 (761)
T ss_dssp TSCCEEEE
T ss_pred cCCeeEEe
Confidence 99988543
No 72
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=57.30 E-value=3.8 Score=38.45 Aligned_cols=54 Identities=26% Similarity=0.662 Sum_probs=39.8
Q ss_pred CCccccccCcccccc-CCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhccc
Q 001373 35 SGQICQICGDEIEIT-DNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (1091)
Q Consensus 35 ~~~~C~iCgd~vg~~-~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Ykr 90 (1091)
+...|.||-+.+... +.+...+.+ .|+-..|..|.+--.+. +..||.|++.+..
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 125 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEE-TTSBEEEHHHHHHHHHH-CSBCTTTCCBCCG
T ss_pred CCCCCCCCCCccccccccCcceEeC-CCCChhhHHHHHHHHHc-CCCCCCCCCcCCh
Confidence 455899998886543 345555555 89999999999655444 5799999999854
No 73
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=56.95 E-value=5.2 Score=38.74 Aligned_cols=45 Identities=29% Similarity=0.647 Sum_probs=32.0
Q ss_pred cccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhccc
Q 001373 38 ICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (1091)
Q Consensus 38 ~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Ykr 90 (1091)
.|.||-+..- ++ |.. .|+--.|+.|..--. +.+..||.|+++.+.
T Consensus 55 ~C~iC~~~~~-----~~-~~~-~CgH~fc~~Ci~~~~-~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 55 QCIICSEYFI-----EA-VTL-NCAHSFCSYCINEWM-KRKIECPICRKDIKS 99 (138)
T ss_dssp BCTTTCSBCS-----SE-EEE-TTSCEEEHHHHHHHT-TTCSBCTTTCCBCCC
T ss_pred CCcccCcccC-----Cc-eEC-CCCCCccHHHHHHHH-HcCCcCCCCCCcCCC
Confidence 6999988752 12 222 478889999985433 446789999998753
No 74
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=55.54 E-value=6.1 Score=36.51 Aligned_cols=46 Identities=15% Similarity=0.107 Sum_probs=34.3
Q ss_pred CccccccCccccccCCCCccccCCCCC-CCcchhhHHHHHhhcCCCCCCChhhcc
Q 001373 36 GQICQICGDEIEITDNGEPFVACNECA-FPVCRPCYEYERREGNQACPQCKTRYK 89 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~-fpvCrpCyeyerkeG~~~CpqCkt~Yk 89 (1091)
.-.|.||.+- +. ++.+. .|+ .-.||.|-+--.++ +..||.|++++.
T Consensus 22 ~~~CpI~~~~-m~----dPV~~--~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~ 68 (98)
T 1wgm_A 22 EFLDPIMSTL-MC----DPVVL--PSSRVTVDRSTIARHLLS-DQTDPFNRSPLT 68 (98)
T ss_dssp TTBCTTTCSB-CS----SEEEC--TTTCCEEEHHHHHHHTTT-SCBCTTTCSBCC
T ss_pred hcCCcCcccc-cc----CCeEC--CCCCeEECHHHHHHHHHh-CCCCCCCCCCCC
Confidence 4589999763 33 24443 478 99999999777665 689999999884
No 75
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.34 E-value=4.1 Score=36.17 Aligned_cols=47 Identities=26% Similarity=0.757 Sum_probs=33.8
Q ss_pred ccccccCccccccCCCCccccCCCCCCCcchhhHHHH-HhhcCCCCCCChhhcc
Q 001373 37 QICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYE-RREGNQACPQCKTRYK 89 (1091)
Q Consensus 37 ~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeye-rkeG~~~CpqCkt~Yk 89 (1091)
..|.||-+.|.. | ..|..|+-..=..|..-= +..+++.||.|++...
T Consensus 16 ~~C~IC~~~i~~---g---~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 16 KICNICHSLLIQ---G---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp CBCSSSCCBCSS---S---EECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CcCcchhhHccc---C---CccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 489999999863 3 357677766667787433 4455689999998773
No 76
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=54.06 E-value=7.7 Score=33.65 Aligned_cols=30 Identities=27% Similarity=0.590 Sum_probs=23.9
Q ss_pred cCCccccccCccccccCCCCccccCCCCCCCc
Q 001373 34 LSGQICQICGDEIEITDNGEPFVACNECAFPV 65 (1091)
Q Consensus 34 ~~~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpv 65 (1091)
.-.-+|.-||.++.+... .-+-|.+|++.|
T Consensus 19 ~v~Y~C~~Cg~~~~l~~~--~~iRC~~CG~RI 48 (63)
T 3h0g_L 19 TMIYLCADCGARNTIQAK--EVIRCRECGHRV 48 (63)
T ss_dssp CCCCBCSSSCCBCCCCSS--SCCCCSSSCCCC
T ss_pred CeEEECCCCCCeeecCCC--CceECCCCCcEE
Confidence 345799999999998853 338999999876
No 77
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=53.23 E-value=5.7 Score=37.32 Aligned_cols=45 Identities=24% Similarity=0.485 Sum_probs=32.8
Q ss_pred CccccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhcc
Q 001373 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Yk 89 (1091)
.-.|.||-+... ++.+.. .|+--.|+.|..--.+ ..||.|++++.
T Consensus 22 ~~~C~IC~~~~~-----~pv~~~-~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~ 66 (117)
T 1jm7_B 22 LLRCSRCTNILR-----EPVCLG-GCEHIFCSNCVSDCIG---TGCPVCYTPAW 66 (117)
T ss_dssp TTSCSSSCSCCS-----SCBCCC-SSSCCBCTTTGGGGTT---TBCSSSCCBCS
T ss_pred CCCCCCCChHhh-----CccEeC-CCCCHHHHHHHHHHhc---CCCcCCCCcCc
Confidence 458999987652 344333 6899999999854433 78999999984
No 78
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=52.57 E-value=3.5 Score=35.45 Aligned_cols=48 Identities=29% Similarity=0.811 Sum_probs=34.0
Q ss_pred CccccccCccccccCCCCccccCCCCCCCcchhhHHHHHhh------cCCCCCCChhhccc
Q 001373 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERRE------GNQACPQCKTRYKR 90 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerke------G~~~CpqCkt~Ykr 90 (1091)
...|.||-+...- +.+ . .|+--.|+.|.+--.+. +...||.|++++..
T Consensus 12 ~~~C~IC~~~~~~-----p~~-l-~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 12 EVTCPICLELLTE-----PLS-L-DCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCEETTTTEECSS-----CCC-C-SSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred CCCCcCCCcccCC-----eeE-C-CCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 4589999987521 222 3 68889999999643332 37899999999854
No 79
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.89 E-value=14 Score=31.77 Aligned_cols=45 Identities=20% Similarity=0.564 Sum_probs=32.2
Q ss_pred cCCccccccCccccccCCCCccccCCCCCCC-cchhhHHHHHhhcCCCCCCChhhccc
Q 001373 34 LSGQICQICGDEIEITDNGEPFVACNECAFP-VCRPCYEYERREGNQACPQCKTRYKR 90 (1091)
Q Consensus 34 ~~~~~C~iCgd~vg~~~~Ge~fvaC~eC~fp-vCrpCyeyerkeG~~~CpqCkt~Ykr 90 (1091)
.....|.||-+.. .--+|++| +=- .|..|.+ ..+.||.|+++...
T Consensus 13 ~~~~~C~IC~~~~----~~~v~~pC---gH~~~C~~C~~-----~~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGT----VNWVLLPC---RHTCLCDGCVK-----YFQQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSC----CCCEETTT---TBCCSCTTHHH-----HCSSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCC----CCEEEECC---CChhhhHHHHh-----cCCCCCCCCcchhc
Confidence 3456899998753 22357777 433 7999997 25899999998754
No 80
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=48.29 E-value=6 Score=37.05 Aligned_cols=55 Identities=25% Similarity=0.637 Sum_probs=39.5
Q ss_pred CCccccccCcccccc-CCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhcccc
Q 001373 35 SGQICQICGDEIEIT-DNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRI 91 (1091)
Q Consensus 35 ~~~~C~iCgd~vg~~-~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Ykr~ 91 (1091)
+...|.||-+..... .+|+..+.- .|+--.|+.|.+--.++ +..||.|++++...
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~ 61 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN-ANTCPTCRKKINHK 61 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEE-TTCCEEEHHHHHHHHTT-CSBCTTTCCBCTTT
T ss_pred CCCCCcccChhhhCccccccCeEec-CCCChhhHHHHHHHHHh-CCCCCCCCCcCccc
Confidence 345899999886543 245544444 78999999999655544 46999999998654
No 81
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=47.94 E-value=7.2 Score=34.07 Aligned_cols=53 Identities=28% Similarity=0.644 Sum_probs=36.1
Q ss_pred CCccccccCccccccCCCCccccCCCCCCCcchhhHHHH---HhhcCCCCCCChhhcccc
Q 001373 35 SGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYE---RREGNQACPQCKTRYKRI 91 (1091)
Q Consensus 35 ~~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeye---rkeG~~~CpqCkt~Ykr~ 91 (1091)
+...|.+|+.. .+|+..+.|..|.--.=-.|.... ..+|.-.||.|..+-++.
T Consensus 17 ~~~~C~~C~~~----~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k~ 72 (75)
T 2k16_A 17 QIWICPGCNKP----DDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKKD 72 (75)
T ss_dssp EEECBTTTTBC----CSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCSC
T ss_pred CCcCCCCCCCC----CCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhhc
Confidence 35589999865 368889999988533333454332 224788999998876543
No 82
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=47.80 E-value=9.9 Score=31.08 Aligned_cols=45 Identities=24% Similarity=0.589 Sum_probs=32.0
Q ss_pred CccccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhcccc
Q 001373 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRI 91 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Ykr~ 91 (1091)
...|.||-+..-. -... .|+--.|+.|.+- .+..||.|+++....
T Consensus 6 ~~~C~IC~~~~~~----p~~l---~CgH~fC~~Ci~~----~~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 6 FLRCQQCQAEAKC----PKLL---PCLHTLCSGCLEA----SGMQCPICQAPWPLG 50 (56)
T ss_dssp CSSCSSSCSSCBC----CSCS---TTSCCSBTTTCSS----SSSSCSSCCSSSSCC
T ss_pred CCCceEeCCccCC----eEEc---CCCCcccHHHHcc----CCCCCCcCCcEeecC
Confidence 3479999886531 1233 4677789999743 678999999988654
No 83
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=47.19 E-value=9.6 Score=40.81 Aligned_cols=49 Identities=22% Similarity=0.655 Sum_probs=38.9
Q ss_pred CccccccCccccccCCCCccccCCCCCCCcchhhHHHH-HhhcCCCCCCChhhccc
Q 001373 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYE-RREGNQACPQCKTRYKR 90 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeye-rkeG~~~CpqCkt~Ykr 90 (1091)
-..|++|-+-|..+ +.|..|+-..=+.|++-- +..++..||.|++....
T Consensus 180 i~~C~iC~~iv~~g------~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 180 VKICNICHSLLIQG------QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp CCBCTTTCSBCSSC------EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCcCcchhhHHhCC------cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 45899999998852 789889998889999654 44466799999998743
No 84
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=46.09 E-value=10 Score=43.60 Aligned_cols=48 Identities=25% Similarity=0.688 Sum_probs=33.7
Q ss_pred ccccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhcccc
Q 001373 37 QICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRI 91 (1091)
Q Consensus 37 ~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Ykr~ 91 (1091)
..|.||-+..- + -...+| +=-.|+.|..--.+.++..||-|+++....
T Consensus 333 ~~C~ICle~~~---~-pv~lpC---GH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 333 QLCKICAENDK---D-VKIEPC---GHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SBCTTTSSSBC---C-EEEETT---CCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCccCcCCC---C-eEEeCC---CChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 58999977641 1 134444 555699999655554789999999988653
No 85
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=46.06 E-value=12 Score=35.05 Aligned_cols=54 Identities=22% Similarity=0.363 Sum_probs=35.8
Q ss_pred CCccccccCcccccc----------CCCC-ccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhcc
Q 001373 35 SGQICQICGDEIEIT----------DNGE-PFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1091)
Q Consensus 35 ~~~~C~iCgd~vg~~----------~~Ge-~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Yk 89 (1091)
....|.||-+.+... ..|+ .-+.--.|+---++.|-. +--..+..||-|+..++
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~-~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCIS-RWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHH-HHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHH-HHHHcCCcCcCCCCcce
Confidence 456899998886643 1122 122223688899999984 43345899999999864
No 86
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.13 E-value=14 Score=31.92 Aligned_cols=43 Identities=33% Similarity=0.731 Sum_probs=30.2
Q ss_pred CccccccCccccccCCCCccccCCCCCCC-cchhhHHHHHhhcCCCCCCChhhccc
Q 001373 36 GQICQICGDEIEITDNGEPFVACNECAFP-VCRPCYEYERREGNQACPQCKTRYKR 90 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~fp-vCrpCyeyerkeG~~~CpqCkt~Ykr 90 (1091)
...|.||-+..- .-.+++| +-- .|+.|.+ ....||-|+++...
T Consensus 25 ~~~C~IC~~~~~----~~~~~pC---gH~~~C~~C~~-----~~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRNI----AIVFVPC---GHLVTCKQCAE-----AVDKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSCC----CBCCSSS---CCCCBCHHHHH-----HCSBCTTTCCBCCC
T ss_pred CCCCCcCCCCCC----CEEEecC---CCHHHHHHHhh-----CCCCCccCCceecC
Confidence 348999987631 1235554 666 7999983 34899999998854
No 87
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=43.75 E-value=5.5 Score=34.28 Aligned_cols=50 Identities=22% Similarity=0.614 Sum_probs=35.8
Q ss_pred ccccCCccccccCccccccCCCCccccCCCCCCCcchhhHHH---HHhhcCCCCCCChhh
Q 001373 31 VKELSGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEY---ERREGNQACPQCKTR 87 (1091)
Q Consensus 31 ~~~~~~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyey---erkeG~~~CpqCkt~ 87 (1091)
++..+...|.+|++. | ..+.|..|.-..=..|..- +.-+|.=.||.|...
T Consensus 3 ~~~~~~~~C~vC~~~------g-~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 3 MAQKNEDECAVCRDG------G-ELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CCCSCCCSBSSSSCC------S-SCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred cCCCCCCCCccCCCC------C-CEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 344567799999973 3 5788999976655677751 234688899999764
No 88
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.45 E-value=31 Score=27.48 Aligned_cols=42 Identities=21% Similarity=0.684 Sum_probs=30.3
Q ss_pred CccccccCccccccCCCCccccCCCCCCCcchhhHHHHHhh--cCCCCCCC
Q 001373 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERRE--GNQACPQC 84 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerke--G~~~CpqC 84 (1091)
...|.||-+..... ... .|+--.|+.|.+--.++ ++..||.|
T Consensus 15 ~~~C~IC~~~~~~p----~~~---~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 15 EASCSVCLEYLKEP----VII---ECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCBCSSSCCBCSSC----CCC---SSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred CCCCccCCcccCcc----EeC---CCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 45899999886321 222 57888899999665443 77899988
No 89
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=42.94 E-value=9.2 Score=47.58 Aligned_cols=58 Identities=40% Similarity=0.838 Sum_probs=42.5
Q ss_pred cCCccccccCccccccCC---CCccccCCCCC--------------------CCcchhhH-HHH----Hh--hcCCCCCC
Q 001373 34 LSGQICQICGDEIEITDN---GEPFVACNECA--------------------FPVCRPCY-EYE----RR--EGNQACPQ 83 (1091)
Q Consensus 34 ~~~~~C~iCgd~vg~~~~---Ge~fvaC~eC~--------------------fpvCrpCy-eye----rk--eG~~~Cpq 83 (1091)
..-.+|.-|=.++---.| +=+|+-|..|| ||.|..|. ||+ || ----+||.
T Consensus 104 pD~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfhAqp~aC~~ 183 (772)
T 4g9i_A 104 PDIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLNRRYHAEPTACPV 183 (772)
T ss_dssp CCCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSSTTTTCTTCCCTT
T ss_pred CchhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCCCCCcCCCCCCcc
Confidence 455689999988754333 56899999994 99999996 455 33 12249999
Q ss_pred Chhhcccc
Q 001373 84 CKTRYKRI 91 (1091)
Q Consensus 84 Ckt~Ykr~ 91 (1091)
|+=++.-.
T Consensus 184 CGP~l~l~ 191 (772)
T 4g9i_A 184 CGPSYRLY 191 (772)
T ss_dssp TSCCEEEE
T ss_pred CCceEEEE
Confidence 99887544
No 90
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=42.90 E-value=9.5 Score=32.23 Aligned_cols=49 Identities=20% Similarity=0.435 Sum_probs=33.7
Q ss_pred cCCccccccCccccccCCCCccc--cCCCCCCC-cchhhHHHHHhhcCCCCCCChhhccc
Q 001373 34 LSGQICQICGDEIEITDNGEPFV--ACNECAFP-VCRPCYEYERREGNQACPQCKTRYKR 90 (1091)
Q Consensus 34 ~~~~~C~iCgd~vg~~~~Ge~fv--aC~eC~fp-vCrpCyeyerkeG~~~CpqCkt~Ykr 90 (1091)
.....|.||-|+..- -.|+ +| |-- .|..|.+--. +.+..||-|.++...
T Consensus 6 ~~~~~C~IC~~~~~~----~~~~~~pC---gH~~~C~~C~~~~~-~~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 6 NAIEPCVICQGRPKN----GCIVHGKT---GHLMACFTCAKKLK-KRNKPCPVCRQPIQM 57 (64)
T ss_dssp GGGSCCTTTSSSCSC----EEEEETTE---EEEEECHHHHHHHH-HTTCCCTTTCCCCCE
T ss_pred CCcCCCCcCCCCCCC----EEEECCCC---CChhhHHHHHHHHH-HcCCcCCCcCcchhc
Confidence 345689999886321 1455 54 655 6999997554 456889999988743
No 91
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=42.43 E-value=9.2 Score=46.72 Aligned_cols=55 Identities=35% Similarity=0.908 Sum_probs=41.3
Q ss_pred CCccccccCccccccCC---CCccccCCCCC--------------------CCcchhhH-HHH----Hh--hcCCCCCCC
Q 001373 35 SGQICQICGDEIEITDN---GEPFVACNECA--------------------FPVCRPCY-EYE----RR--EGNQACPQC 84 (1091)
Q Consensus 35 ~~~~C~iCgd~vg~~~~---Ge~fvaC~eC~--------------------fpvCrpCy-eye----rk--eG~~~CpqC 84 (1091)
.-.+|.-|=.++---.| +=+|+-|..|| ||.|..|. ||+ || ----+||.|
T Consensus 16 D~a~C~~Cl~e~~dp~~Rry~YpF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfHAqp~aCp~C 95 (657)
T 3ttc_A 16 DAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKEYRDPLDRRFHAQPVACPEC 95 (657)
T ss_dssp CBCCCHHHHHHHTSTTSTTTTCTTCCBTTBBCSGGGBSSSSCSGGGBGGGGSCCCHHHHHHHHCTTSTTTTCTTCCCTTT
T ss_pred chhhhHHHHHHhcCCCCcccCCccccCcCCCchHHhcccCCCCCCCCcccCCCCChHHHHHhCCCCCCcCcCCCCcCccc
Confidence 45599999999754332 55899999994 99999997 566 44 122599999
Q ss_pred hhhcc
Q 001373 85 KTRYK 89 (1091)
Q Consensus 85 kt~Yk 89 (1091)
+=++.
T Consensus 96 GP~l~ 100 (657)
T 3ttc_A 96 GPYLE 100 (657)
T ss_dssp SCCEE
T ss_pred Cccce
Confidence 98883
No 92
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=42.37 E-value=7 Score=38.36 Aligned_cols=46 Identities=22% Similarity=0.600 Sum_probs=36.4
Q ss_pred CccccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhc
Q 001373 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRY 88 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Y 88 (1091)
.-.|.||.+-+- ++ |.. .|+=-.|+.|.+--.+.++..||.|+++.
T Consensus 31 ~~~C~IC~~~~~-----~p-v~~-~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 31 KYLCSACRNVLR-----RP-FQA-QCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp GGBCTTTCSBCS-----SE-EEC-TTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred CcCCCCCChhhc-----Cc-EEC-CCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 348999987642 23 334 89999999999887888888999999865
No 93
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=41.92 E-value=10 Score=42.93 Aligned_cols=35 Identities=20% Similarity=0.494 Sum_probs=28.9
Q ss_pred cCCccccccCccc-cccCCCCccccCCCCCCCcchhhHH
Q 001373 34 LSGQICQICGDEI-EITDNGEPFVACNECAFPVCRPCYE 71 (1091)
Q Consensus 34 ~~~~~C~iCgd~v-g~~~~Ge~fvaC~eC~fpvCrpCye 71 (1091)
.....|..|+..+ |+...| ..|..|++.||+.|..
T Consensus 355 ~~~t~C~~C~~~~~g~~~qg---~~C~~C~~~~h~~C~~ 390 (406)
T 2vrw_B 355 EETTSCKACQMLLRGTFYQG---YRCYRCRAPAHKECLG 390 (406)
T ss_dssp SSCCBCTTTCCBCCSSSSCE---EEETTTCCEECGGGGG
T ss_pred CCCCCCccccchhceeCCCC---CCCCCCcCccchhhhh
Confidence 3456999999997 676666 5699999999999984
No 94
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=41.11 E-value=2.8 Score=40.09 Aligned_cols=30 Identities=17% Similarity=0.587 Sum_probs=19.4
Q ss_pred cccCCCCCCCcchhhHHHHHhhcCC-CCCCChhhcccc
Q 001373 55 FVACNECAFPVCRPCYEYERREGNQ-ACPQCKTRYKRI 91 (1091)
Q Consensus 55 fvaC~eC~fpvCrpCyeyerkeG~~-~CpqCkt~Ykr~ 91 (1091)
..-|.+|++. ++..+-.. .||.|+.+-.+.
T Consensus 73 ~~~C~~CG~~-------~e~~~~~~~~CP~Cgs~~~~i 103 (119)
T 2kdx_A 73 ELECKDCSHV-------FKPNALDYGVCEKCHSKNVII 103 (119)
T ss_dssp EEECSSSSCE-------ECSCCSTTCCCSSSSSCCCEE
T ss_pred eEEcCCCCCE-------EeCCCCCCCcCccccCCCcEE
Confidence 4567777643 23234456 899999987665
No 95
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=40.07 E-value=5.9 Score=34.86 Aligned_cols=56 Identities=25% Similarity=0.564 Sum_probs=41.9
Q ss_pred cccccCCccccccCccccccCCCCccccCCCCCCCcchhhHHHH-HhhcCCCCCCChhh
Q 001373 30 SVKELSGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYE-RREGNQACPQCKTR 87 (1091)
Q Consensus 30 ~~~~~~~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeye-rkeG~~~CpqCkt~ 87 (1091)
+....+...|.+|++. -..+++..+-|..|.-.+=..||.-. .-+|.=.||.|...
T Consensus 10 ~~~~~~~~~C~vC~~~--~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 10 QSLIDEDAVCSICMDG--ESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CCCCCSSCSCSSSCCC--CCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred ccCCCCCCCCCCCCCC--CCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 3445567799999874 23456788999999888888888643 34788999999763
No 96
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=38.37 E-value=22 Score=33.63 Aligned_cols=24 Identities=25% Similarity=0.112 Sum_probs=16.5
Q ss_pred CcchhhHHHHHhhcC-CCCCCChhhcc
Q 001373 64 PVCRPCYEYERREGN-QACPQCKTRYK 89 (1091)
Q Consensus 64 pvCrpCyeyerkeG~-~~CpqCkt~Yk 89 (1091)
|.|+.||+- +-+. ..|-.|+.+-.
T Consensus 56 ~yC~~cy~~--~f~~~~~C~~C~~~I~ 80 (122)
T 1m3v_A 56 ILCRNDYIR--LFGNSGAGGSGGHMGS 80 (122)
T ss_dssp EECHHHHHH--HHCCCCSSSCSSCCSC
T ss_pred eecHHHHHH--HcCCCCccccCCCCcC
Confidence 459999843 4443 38999988763
No 97
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=37.95 E-value=13 Score=44.25 Aligned_cols=35 Identities=17% Similarity=0.460 Sum_probs=29.8
Q ss_pred CCccccccCccc-cccCCCCccccCCCCCCCcchhhHHH
Q 001373 35 SGQICQICGDEI-EITDNGEPFVACNECAFPVCRPCYEY 72 (1091)
Q Consensus 35 ~~~~C~iCgd~v-g~~~~Ge~fvaC~eC~fpvCrpCyey 72 (1091)
....|..|++-+ |+.-.| ..|..|+|.||+-|.+.
T Consensus 528 ~~t~C~~C~~~l~gl~~qg---~~C~~C~~~vHk~C~~~ 563 (587)
T 3ky9_A 528 ETTSCKACQMLLRGTFYQG---YRCHRCRASAHKECLGR 563 (587)
T ss_dssp SCCBCTTTCSBCCSSSCCE---EEETTTCCEECSGGGGG
T ss_pred CCcccccccccccccccCC---cCCCCCCCccchhhhhc
Confidence 456999999997 877666 78999999999999954
No 98
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=36.73 E-value=2.9 Score=36.91 Aligned_cols=40 Identities=23% Similarity=0.479 Sum_probs=29.4
Q ss_pred CcchhhHHHHHhhcCCCCCCChhhcccccCCCCCCCCCCC
Q 001373 64 PVCRPCYEYERREGNQACPQCKTRYKRIKGSPRVDGDEEE 103 (1091)
Q Consensus 64 pvCrpCyeyerkeG~~~CpqCkt~Ykr~kgsprv~gd~ee 103 (1091)
|+|+.=.+|++.+|.-.|+.|+..|--..|=|..--||..
T Consensus 12 P~ck~~L~~~~~~~~LiC~~cg~~YPI~dGIPvmL~~Ear 51 (70)
T 2js4_A 12 PVCKGRLEFQRAQAELVCNADRLAFPVRDGVPIMLEAEAR 51 (70)
T ss_dssp TTTCCBEEEETTTTEEEETTTTEEEEEETTEECCCGGGSE
T ss_pred CCCCCcCEEeCCCCEEEcCCCCceecCCCCeeeeChhhcc
Confidence 4444444455567888999999999999999977666533
No 99
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=36.52 E-value=8.1 Score=35.27 Aligned_cols=54 Identities=26% Similarity=0.591 Sum_probs=40.7
Q ss_pred ccCCccccccCccccccCCCCccccCCCCCCCcchhhHHHH-HhhcCCCCCCChhhc
Q 001373 33 ELSGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYE-RREGNQACPQCKTRY 88 (1091)
Q Consensus 33 ~~~~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeye-rkeG~~~CpqCkt~Y 88 (1091)
..+...|.+|++. -..+++..+-|..|.-.+=..||.-. .-+|.=.||.|...-
T Consensus 22 ~~~~~~C~vC~~~--~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 22 IDEDAVCSICMDG--ESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCCCSSCCSS--SSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred CCCCCcCCcCCCC--CCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCcc
Confidence 3466799999964 22456789999999887778888543 447899999997653
No 100
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=36.45 E-value=4.3 Score=40.10 Aligned_cols=14 Identities=29% Similarity=0.672 Sum_probs=10.4
Q ss_pred CCCCCCChhhcccc
Q 001373 78 NQACPQCKTRYKRI 91 (1091)
Q Consensus 78 ~~~CpqCkt~Ykr~ 91 (1091)
...||.|+.+--..
T Consensus 107 ~~~CP~Cgs~~~~i 120 (139)
T 3a43_A 107 FLACPKCGSHDFEV 120 (139)
T ss_dssp GCSCSSSSCCCEEE
T ss_pred CCcCccccCCccEE
Confidence 57899999875443
No 101
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=36.14 E-value=9.7 Score=31.57 Aligned_cols=31 Identities=26% Similarity=0.745 Sum_probs=25.8
Q ss_pred CccccccCccccccCCCCccccCCCC-CCCcchhhHHH
Q 001373 36 GQICQICGDEIEITDNGEPFVACNEC-AFPVCRPCYEY 72 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC-~fpvCrpCyey 72 (1091)
+-.|..|+.+|| .-.-|.+| .|-+|..||.-
T Consensus 6 ~~~Cd~C~~~ig------~R~~C~~C~dyDLC~~C~~~ 37 (52)
T 1tot_A 6 VYTCNECKHHVE------TRWHCTVCEDYDLCINCYNT 37 (52)
T ss_dssp CEEETTTTEEES------SEEEESSSSSCEECHHHHHH
T ss_pred EEECCCCCCCCc------ceEEcCCCCCchhHHHHHhC
Confidence 458999999853 46889999 89999999964
No 102
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=36.09 E-value=16 Score=32.30 Aligned_cols=27 Identities=22% Similarity=0.722 Sum_probs=17.4
Q ss_pred CccccccCccccccCCCCccccCCCCCCC
Q 001373 36 GQICQICGDEIEITDNGEPFVACNECAFP 64 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~fp 64 (1091)
.-+|.-||.++.+.. ++ -+.|.+|+..
T Consensus 28 ~Y~C~~CG~~~e~~~-~d-~irCp~CG~R 54 (70)
T 1twf_L 28 KYICAECSSKLSLSR-TD-AVRCKDCGHR 54 (70)
T ss_dssp CEECSSSCCEECCCT-TS-TTCCSSSCCC
T ss_pred EEECCCCCCcceeCC-CC-CccCCCCCce
Confidence 347888888877763 22 2467777663
No 103
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.00 E-value=20 Score=31.48 Aligned_cols=61 Identities=21% Similarity=0.561 Sum_probs=33.2
Q ss_pred ccccCCccccccCccccc----cCCCCcc----ccCCCCCCCcchhhHHHH-HhhcCCCCCCChhhcccccCCC
Q 001373 31 VKELSGQICQICGDEIEI----TDNGEPF----VACNECAFPVCRPCYEYE-RREGNQACPQCKTRYKRIKGSP 95 (1091)
Q Consensus 31 ~~~~~~~~C~iCgd~vg~----~~~Ge~f----vaC~eC~fpvCrpCyeye-rkeG~~~CpqCkt~Ykr~kgsp 95 (1091)
.+......|..|+..|.. .+.|..+ ..|.+|.=+.=.-.| ++ .+||. +=|+.-|.+...+|
T Consensus 10 ~~~~~~~~C~~C~~~I~~~e~v~a~~~~wH~~CF~C~~C~~~L~~~~~-~~~~~~g~---~yC~~~y~~~~~~~ 79 (82)
T 2co8_A 10 QEAGAGDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGY-EQHPGDGH---FYCLQHLPQTDSGP 79 (82)
T ss_dssp CCCCSSCBCSSSCCBCCTTTBCCBTTBCCBTTTCBCSSSCCBCCTTSE-ECCTTTCC---CEETTTCCCCCCCC
T ss_pred cCCCCCCCCcccCCCcccceEEEECCCeeCCCcCEEcCCCCCcCCCce-eEeCcCCE---EEChHHHHhhhcCC
Confidence 344556799999999853 3456554 235555444433333 11 14554 34556666665554
No 104
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=35.83 E-value=18 Score=34.16 Aligned_cols=46 Identities=24% Similarity=0.544 Sum_probs=26.5
Q ss_pred ccccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcC-CCCCCChhhc
Q 001373 37 QICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGN-QACPQCKTRY 88 (1091)
Q Consensus 37 ~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~-~~CpqCkt~Y 88 (1091)
-.|..|+..+. +.|..|+. .=+-|.|++||.- +-+. ..|..|+++-
T Consensus 30 F~C~~C~~~L~--~~~~~~~~--~~g~~yC~~~y~~--~~~~~~~C~~C~~~I 76 (131)
T 2xjy_A 30 LSCDLCGCRLG--EVGRRLYY--KLGRKLCRRDYLR--LFGQDGLCASCDKRI 76 (131)
T ss_dssp CBCTTTCCBCS--STTCCEEE--ETTEEECHHHHHH--HHCCCEECTTTCCEE
T ss_pred cccCcCCCccc--cCCCeEEE--ECCEEeecCchhh--hCCCccChhhcCCcc
Confidence 36777776653 11222222 1134689999942 3332 4899999876
No 105
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=35.09 E-value=2.7 Score=36.78 Aligned_cols=32 Identities=22% Similarity=0.175 Sum_probs=25.2
Q ss_pred HHHhhcCCCCCCChhhcccccCCCCCCCCCCC
Q 001373 72 YERREGNQACPQCKTRYKRIKGSPRVDGDEEE 103 (1091)
Q Consensus 72 yerkeG~~~CpqCkt~Ykr~kgsprv~gd~ee 103 (1091)
|...+|.-.|+.|+..|--..|=|..--||..
T Consensus 22 ~~~~~g~LvC~~c~~~YPI~dGIPvmL~~Ear 53 (67)
T 2jny_A 22 YLESEQLLVNERLNLAYRIDDGIPVLLIDEAT 53 (67)
T ss_dssp EETTTTEEEETTTTEEEEEETTEECCCSSCCE
T ss_pred EeCCCCEEEcCCCCccccCCCCEeeeChhHhc
Confidence 33456778999999999999999977776543
No 106
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=34.35 E-value=17 Score=32.58 Aligned_cols=49 Identities=24% Similarity=0.576 Sum_probs=34.2
Q ss_pred CccccccCccccccCCCCccccCCCCCCCcchhhHHHH----HhhcC---CCCCC--Chhhc
Q 001373 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYE----RREGN---QACPQ--CKTRY 88 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeye----rkeG~---~~Cpq--Ckt~Y 88 (1091)
...|.||-+++. +..++.-..|+=.-|+.|..-- .++|. -.||+ |+..+
T Consensus 5 ~~~C~IC~~~~~----~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~ 62 (94)
T 1wim_A 5 SSGCKLCLGEYP----VEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQG 62 (94)
T ss_dssp BCCCSSSCCCCB----GGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCC
T ss_pred CcCCcccCcccc----cccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCC
Confidence 448999998753 3344544457889999997544 24664 48999 99874
No 107
>2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga maritima} PDB: 2gaj_A*
Probab=33.06 E-value=8.7 Score=46.72 Aligned_cols=45 Identities=9% Similarity=-0.024 Sum_probs=18.2
Q ss_pred cccccC-cccccc--CCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhh
Q 001373 38 ICQICG-DEIEIT--DNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTR 87 (1091)
Q Consensus 38 ~C~iCg-d~vg~~--~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~ 87 (1091)
.|..|| .++-.. ..|..|..| |+||-|+.-.-. +.....||+ +.+
T Consensus 574 ~CP~Cg~g~l~~r~~k~G~~f~gC--s~yp~C~f~~~~--~p~~~~Cp~-~~~ 621 (633)
T 2gai_A 574 FYLKCECGKTRSVKNDEIAVIDDG--KIFLGRKDSESG--SPDGRSVEG-KGN 621 (633)
T ss_dssp EEEECSSSCCEECCTTSBCEEETT--EEEC-----------------------
T ss_pred cCcccCCCcceeecccCCCeEEeC--CCCcCCCCeecC--CccCCcCCC-CCe
Confidence 499998 665443 467789999 566666544321 224478998 643
No 108
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=32.62 E-value=28 Score=32.79 Aligned_cols=51 Identities=24% Similarity=0.556 Sum_probs=39.0
Q ss_pred CccccccCcccc--ccCCCCccccCCCCCCCcchhhHHH------HHhhcCCCCCCChh
Q 001373 36 GQICQICGDEIE--ITDNGEPFVACNECAFPVCRPCYEY------ERREGNQACPQCKT 86 (1091)
Q Consensus 36 ~~~C~iCgd~vg--~~~~Ge~fvaC~eC~fpvCrpCyey------erkeG~~~CpqCkt 86 (1091)
..+|.+|...=. .+.+++.++.|..|+-..=..|.++ ..++++=.||.||+
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~ 63 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECKT 63 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTCC
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCCc
Confidence 458999976533 3356778999999988777788853 35789999999984
No 109
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.00 E-value=28 Score=31.45 Aligned_cols=46 Identities=22% Similarity=0.376 Sum_probs=33.0
Q ss_pred CccccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhc-----CCCCCC--Chhh
Q 001373 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREG-----NQACPQ--CKTR 87 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG-----~~~Cpq--Ckt~ 87 (1091)
.-+|.||.+- +. ++.+.- .||.-.||.|-+--.+++ ...||. |+..
T Consensus 7 ~~~CPI~~~~-~~----dPV~~~-~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 7 GFTCPITKEE-MK----KPVKNK-VCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp CCBCTTTCSB-CS----SEEEES-SSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred EeECcCcCch-hc----CCEEcC-CCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 3489999864 32 355542 689999999987665543 468999 8876
No 110
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.99 E-value=71 Score=28.29 Aligned_cols=34 Identities=18% Similarity=0.437 Sum_probs=21.4
Q ss_pred ccccccCCccccccCccccc----cCCCCcc----ccCCCCC
Q 001373 29 TSVKELSGQICQICGDEIEI----TDNGEPF----VACNECA 62 (1091)
Q Consensus 29 ~~~~~~~~~~C~iCgd~vg~----~~~Ge~f----vaC~eC~ 62 (1091)
++.+......|..|+..|.- .+.|..+ ..|.+|.
T Consensus 8 ~~~~~~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~ 49 (91)
T 2d8y_A 8 MKFQAPARETCVECQKTVYPMERLLANQQVFHISCFRCSYCN 49 (91)
T ss_dssp SCSCSSSSCBCTTTCCBCCTTSEEECSSSEEETTTCBCTTTC
T ss_pred CccCCCCCCcCccCCCccCCceeEEECCCEECCCCCeeCCCC
Confidence 44444567799999998853 3456553 2466664
No 111
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.87 E-value=24 Score=30.91 Aligned_cols=37 Identities=19% Similarity=0.443 Sum_probs=24.0
Q ss_pred ccccccCCccccccCccccc----cCCCCcc----ccCCCCCCCc
Q 001373 29 TSVKELSGQICQICGDEIEI----TDNGEPF----VACNECAFPV 65 (1091)
Q Consensus 29 ~~~~~~~~~~C~iCgd~vg~----~~~Ge~f----vaC~eC~fpv 65 (1091)
+|.+......|..|+..|.. .+.|..+ ..|.+|.-++
T Consensus 8 ~~~~~~~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L 52 (80)
T 2dj7_A 8 KPIKIRGPSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVIL 52 (80)
T ss_dssp CCCCCSSCSCCTTTCCCCSSSCCEEETTEEECTTTCBCSSSCCBC
T ss_pred CCcCCCCCCCCcCcCCeeCCCeEEEECCcccccccCCcCcCCCCc
Confidence 55556667799999998853 2345443 3577775554
No 112
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=29.77 E-value=20 Score=30.31 Aligned_cols=47 Identities=21% Similarity=0.662 Sum_probs=35.2
Q ss_pred ccCCccccccCccccccCCCCccccCCCCCCCcchhhHHH---HHhhcCCCCCCChh
Q 001373 33 ELSGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEY---ERREGNQACPQCKT 86 (1091)
Q Consensus 33 ~~~~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyey---erkeG~~~CpqCkt 86 (1091)
..+...|.+|++. ...+.|..|.-..=-.|..- +.-+|.-.||.|..
T Consensus 8 ~~~~~~C~vC~~~-------g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 8 TDHQDYCEVCQQG-------GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp SCCCSSCTTTSCC-------SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCCccCCCC-------CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 3456699999972 46788999977666777764 24478999999975
No 113
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.27 E-value=43 Score=29.93 Aligned_cols=36 Identities=17% Similarity=0.468 Sum_probs=20.8
Q ss_pred ccccCCccccccCccccccCCCCccccCCCCCCCcchhh
Q 001373 31 VKELSGQICQICGDEIEITDNGEPFVACNECAFPVCRPC 69 (1091)
Q Consensus 31 ~~~~~~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpC 69 (1091)
+.......|.+|+..-++..+ ---|.-||--+|..|
T Consensus 9 ~pd~~~~~C~~C~~~F~~~~R---rHHCR~CG~vfC~~C 44 (84)
T 1x4u_A 9 YPTNNFGNCTGCSATFSVLKK---RRSCSNCGNSFCSRC 44 (84)
T ss_dssp CSCCCCSSCSSSCCCCCSSSC---CEECSSSCCEECTTT
T ss_pred ccCCCCCcCcCcCCccccchh---hhhhcCCCcEEChhh
Confidence 334456689999999776532 123444444444444
No 114
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=28.34 E-value=2.8 Score=36.79 Aligned_cols=39 Identities=15% Similarity=0.400 Sum_probs=28.1
Q ss_pred CcchhhHHHHHhhcCCCCCCChhhcccccCCCCCCCCCC
Q 001373 64 PVCRPCYEYERREGNQACPQCKTRYKRIKGSPRVDGDEE 102 (1091)
Q Consensus 64 pvCrpCyeyerkeG~~~CpqCkt~Ykr~kgsprv~gd~e 102 (1091)
|+|+-=.+|++.+|.-.|+.|+..|--..|=|..--||.
T Consensus 12 P~ck~~L~~~~~~~~LiC~~cg~~YPI~dGIPvmL~~Ea 50 (68)
T 2hf1_A 12 PLCKGPLVFDKSKDELICKGDRLAFPIKDGIPMMLESEA 50 (68)
T ss_dssp TTTCCBCEEETTTTEEEETTTTEEEEEETTEECCCGGGC
T ss_pred CCCCCcCeEeCCCCEEEcCCCCcEecCCCCeeeeChhhc
Confidence 344433445555788899999999999999887766643
No 115
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=28.19 E-value=23 Score=29.67 Aligned_cols=47 Identities=17% Similarity=0.458 Sum_probs=32.0
Q ss_pred CccccccCccccccCCCCccc--cCCCCCCC-cchhhHHHHHhhcCCCCCCChhhccc
Q 001373 36 GQICQICGDEIEITDNGEPFV--ACNECAFP-VCRPCYEYERREGNQACPQCKTRYKR 90 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fv--aC~eC~fp-vCrpCyeyerkeG~~~CpqCkt~Ykr 90 (1091)
...|.||-|.--- -.++ +| |-- .|..|.+--.+ .+..||-|..+.+.
T Consensus 7 ~~~C~IC~~~~~~----~~~~~~pC---gH~~~C~~C~~~~~~-~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 7 LKPCSLCEKRPRD----GNIIHGRT---GHLVTCFHCARRLKK-AGASCPICKKEIQL 56 (63)
T ss_dssp GSBCTTTSSSBSC----EEEEETTE---EEEEECHHHHHHHHH-TTCBCTTTCCBCCE
T ss_pred CCCCcccCCcCCC----eEEEecCC---CCHhHHHHHHHHHHH-hCCcCCCcCchhhc
Confidence 4589999885211 1244 55 554 79999975544 45899999998753
No 116
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=28.15 E-value=30 Score=35.11 Aligned_cols=23 Identities=39% Similarity=0.713 Sum_probs=16.3
Q ss_pred CcchhhHHHHHhhcCC-CCCCChhhc
Q 001373 64 PVCRPCYEYERREGNQ-ACPQCKTRY 88 (1091)
Q Consensus 64 pvCrpCyeyerkeG~~-~CpqCkt~Y 88 (1091)
|.|+.||. ++-+.+ .|..|+++-
T Consensus 56 ~yC~~cy~--~~~~~~~~C~~C~~~I 79 (188)
T 1rut_X 56 ILCRNDYI--RLFGNSGACSACGQSI 79 (188)
T ss_dssp EECHHHHH--HHHSCCEECTTTCCEE
T ss_pred cccccccc--cccccCCccccCCCcc
Confidence 56999983 334444 799999876
No 117
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.83 E-value=19 Score=29.67 Aligned_cols=15 Identities=27% Similarity=1.061 Sum_probs=13.2
Q ss_pred cCCCCCCChhhcccc
Q 001373 77 GNQACPQCKTRYKRI 91 (1091)
Q Consensus 77 G~~~CpqCkt~Ykr~ 91 (1091)
|..+||+|+..|+..
T Consensus 11 ~~~~CPrCn~~f~~~ 25 (49)
T 2e72_A 11 GRKICPRCNAQFRVT 25 (49)
T ss_dssp SCCCCTTTCCCCSSH
T ss_pred CceeCCcccccccch
Confidence 678999999999875
No 118
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=26.89 E-value=26 Score=31.55 Aligned_cols=23 Identities=22% Similarity=0.603 Sum_probs=15.9
Q ss_pred CCcchhhHHHHHhhcCCCCCCChhhc
Q 001373 63 FPVCRPCYEYERREGNQACPQCKTRY 88 (1091)
Q Consensus 63 fpvCrpCyeyerkeG~~~CpqCkt~Y 88 (1091)
-+.|++||+ ++- ...|.+|+.+-
T Consensus 54 ~~yC~~cy~--~~~-~~~C~~C~~~I 76 (101)
T 2cup_A 54 KILCNKCTT--RED-SPKCKGCFKAI 76 (101)
T ss_dssp EEECHHHHT--TCC-CCBCSSSCCBC
T ss_pred EEEChhHhh--hhc-CCccccCCCcc
Confidence 367999983 223 36899998765
No 119
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=26.72 E-value=15 Score=35.20 Aligned_cols=54 Identities=22% Similarity=0.340 Sum_probs=0.8
Q ss_pred CCccccccCccccccC-----------CCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhcc
Q 001373 35 SGQICQICGDEIEITD-----------NGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1091)
Q Consensus 35 ~~~~C~iCgd~vg~~~-----------~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Yk 89 (1091)
....|.||-+++.... .++.-+.--.|+---|+.|-. +--..+..||-|+.+++
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~-~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCIS-RWLKTRQVCPLDNREWE 111 (117)
T ss_dssp CC----------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHH-HHHHcCCcCCCCCCeee
Confidence 3468999999876421 222233333678888999974 32233789999999864
No 120
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=26.72 E-value=33 Score=37.50 Aligned_cols=51 Identities=18% Similarity=0.339 Sum_probs=36.4
Q ss_pred cCCccccccCccccccCCCCccccCCCCCCCcchhhHHHHHhh-cCCCCCC--Chhhccc
Q 001373 34 LSGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERRE-GNQACPQ--CKTRYKR 90 (1091)
Q Consensus 34 ~~~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerke-G~~~Cpq--Ckt~Ykr 90 (1091)
...-+|.||.+-. -++.+ ...||---||.|.+--.++ |+..||. |+.++..
T Consensus 179 ~~el~CPIcl~~f-----~DPVt-s~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 179 KIELTCPITCKPY-----EAPLI-SRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp BCCSBCTTTSSBC-----SSEEE-ESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred ceeeECcCccCcc-----cCCee-eCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 3445899999875 12332 3468888999999766554 5568999 9998743
No 121
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=26.26 E-value=14 Score=34.98 Aligned_cols=26 Identities=27% Similarity=0.740 Sum_probs=18.5
Q ss_pred ccCCCCCCCcchhhHHHHHhhcCCCCCCChhh
Q 001373 56 VACNECAFPVCRPCYEYERREGNQACPQCKTR 87 (1091)
Q Consensus 56 vaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~ 87 (1091)
..|..|||-.+ ++-.....||.||..
T Consensus 68 ~~C~~CG~~F~------~~~~kPsrCP~CkSe 93 (105)
T 2gmg_A 68 AQCRKCGFVFK------AEINIPSRCPKCKSE 93 (105)
T ss_dssp CBBTTTCCBCC------CCSSCCSSCSSSCCC
T ss_pred cChhhCcCeec------ccCCCCCCCcCCCCC
Confidence 46999998871 233455789999864
No 122
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.76 E-value=43 Score=29.12 Aligned_cols=37 Identities=24% Similarity=0.611 Sum_probs=22.7
Q ss_pred cccCCccccccCcccc---ccCCCCcc----ccCCCCCCCcchh
Q 001373 32 KELSGQICQICGDEIE---ITDNGEPF----VACNECAFPVCRP 68 (1091)
Q Consensus 32 ~~~~~~~C~iCgd~vg---~~~~Ge~f----vaC~eC~fpvCrp 68 (1091)
......+|..|+..|. +.+.|..+ .-|.+|.-++=..
T Consensus 11 ~~~~~~~C~~C~~~I~~~~v~a~~~~~H~~CF~C~~C~~~L~~~ 54 (79)
T 2cor_A 11 RGLGKYICQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKELTAD 54 (79)
T ss_dssp CCCCCCBCTTTCCBCCSCCCCCSSSCCCTTTSBCSSSCCBCCTT
T ss_pred hccCCCCCccCCCEecceEEEECcceeCCCCCEeCCCCCccCCC
Confidence 3445679999999876 22345443 3577776555444
No 123
>1m4f_A Hepcidin; strand-loop-strand, beta-sheet, hairpin loop, antimicrobial protein; NMR {Synthetic} SCOP: j.3.1.8 PDB: 2kef_A 3h0t_C
Probab=25.50 E-value=3.2 Score=30.07 Aligned_cols=9 Identities=44% Similarity=1.228 Sum_probs=8.2
Q ss_pred CCCcchhhH
Q 001373 62 AFPVCRPCY 70 (1091)
Q Consensus 62 ~fpvCrpCy 70 (1091)
.||+||+|+
T Consensus 3 ~~~iC~~CC 11 (26)
T 1m4f_A 3 HFPICIFCC 11 (26)
T ss_dssp SSCCCEEEE
T ss_pred cCCccceec
Confidence 599999999
No 124
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=25.40 E-value=22 Score=30.63 Aligned_cols=43 Identities=33% Similarity=0.712 Sum_probs=30.3
Q ss_pred CccccccCccccccCCCCccccCCCCCCC-cchhhHHHHHhhcCCCCCCChhhccc
Q 001373 36 GQICQICGDEIEITDNGEPFVACNECAFP-VCRPCYEYERREGNQACPQCKTRYKR 90 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~fp-vCrpCyeyerkeG~~~CpqCkt~Ykr 90 (1091)
...|.||-+..- --++.+ |+=- .|+.|..-- ..||-|++++..
T Consensus 24 ~~~C~iC~~~~~----~~~~~p---CgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 24 EKLCKICMDRNI----AIVFVP---CGHLVTCKQCAEAV-----DKCPMCYTVITF 67 (74)
T ss_dssp HTBCTTTSSSBC----CEEEET---TCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred CCCCCCCCCCCC----CEEEcC---CCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence 348999988632 123555 4667 899997422 899999998854
No 125
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.34 E-value=55 Score=27.50 Aligned_cols=10 Identities=30% Similarity=0.717 Sum_probs=7.1
Q ss_pred CCcchhhHHH
Q 001373 63 FPVCRPCYEY 72 (1091)
Q Consensus 63 fpvCrpCyey 72 (1091)
-+.|++||+-
T Consensus 54 ~~yC~~cy~~ 63 (72)
T 1x61_A 54 RAYCEGCYVA 63 (72)
T ss_dssp CEEEHHHHHH
T ss_pred eEECHHHHHH
Confidence 4678888853
No 126
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=25.23 E-value=31 Score=32.39 Aligned_cols=42 Identities=31% Similarity=0.776 Sum_probs=25.2
Q ss_pred cccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhc
Q 001373 38 ICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRY 88 (1091)
Q Consensus 38 ~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Y 88 (1091)
.|..|+..+. |+.|+. .=+-|.|++||+ ++- ...|..|+++-
T Consensus 32 ~C~~C~~~L~----~~~f~~--~~g~~yC~~cy~--~~~-~~~C~~C~~~I 73 (126)
T 2xqn_T 32 CCFDCDSILA----GEIYVM--VNDKPVCKPCYV--KNH-AVVCQGCHNAI 73 (126)
T ss_dssp BCTTTCCBCT----TSEEEE--ETTEEEEHHHHH--HHS-CCBCTTTCSBC
T ss_pred CcCCCCCCCC----cCEEEe--ECCEEechHHhC--cCc-CccCcccCCcC
Confidence 5666665543 222322 124578999994 233 36899999876
No 127
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=24.66 E-value=25 Score=35.42 Aligned_cols=35 Identities=31% Similarity=0.664 Sum_probs=25.0
Q ss_pred ccccccC-ccccc----cCCCC-ccccCCCCCCCcchhhHH
Q 001373 37 QICQICG-DEIEI----TDNGE-PFVACNECAFPVCRPCYE 71 (1091)
Q Consensus 37 ~~C~iCg-d~vg~----~~~Ge-~fvaC~eC~fpvCrpCye 71 (1091)
.+|..|| .+.-. ..+|+ .++--+|=--|+||-||.
T Consensus 138 ~ic~~cg~~~a~~~~r~~~~~~~~~ig~~~~Y~~~cr~~~~ 178 (184)
T 2orw_A 138 AVCHRCGEYNATLTLKVAGGEEEIDVGGQEKYIAVCRDCYN 178 (184)
T ss_dssp BCCTTTCCSCBCEEEECSSCSCSCCCCSTTTEEEECHHHHH
T ss_pred eecCCCCCeeceeEEEEcCCCCEEEECCCCcEEEccHHHHh
Confidence 4899999 55322 34555 466777888999999994
No 128
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=24.63 E-value=21 Score=37.12 Aligned_cols=35 Identities=26% Similarity=0.490 Sum_probs=24.3
Q ss_pred ccccccCccccc----cCCCCc-cccCCCCCCCcchhhHH
Q 001373 37 QICQICGDEIEI----TDNGEP-FVACNECAFPVCRPCYE 71 (1091)
Q Consensus 37 ~~C~iCgd~vg~----~~~Ge~-fvaC~eC~fpvCrpCye 71 (1091)
.+|..||.+--. +++|+. .+-=+|=-.|+||-||.
T Consensus 152 aiC~~Cg~~A~~~~R~~~~~~~i~IGg~e~Y~~~CR~c~~ 191 (195)
T 1w4r_A 152 AVCMECFREAAYTKRLGTEKEVEVIGGADKYHSVCRLCYF 191 (195)
T ss_dssp EECTTTCSEECEEEESSCCCSSCCCCCTTTEEEECHHHHT
T ss_pred eEecccCCeeeeEEEEcCCCCEEEECCCCcEEEccHHHhh
Confidence 489999987332 235553 45556777899999994
No 129
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=24.30 E-value=30 Score=29.18 Aligned_cols=46 Identities=26% Similarity=0.738 Sum_probs=34.4
Q ss_pred CCccccccCccccccCCCCccccCCCCCCCcchhhHHH---HHhhcCCCCCCChhh
Q 001373 35 SGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEY---ERREGNQACPQCKTR 87 (1091)
Q Consensus 35 ~~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyey---erkeG~~~CpqCkt~ 87 (1091)
+...|.+|++ |...+-|..|.-..=..|..- +.-+|.=.||.|..+
T Consensus 8 ~~~~C~vC~~-------~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 8 HMEFCRVCKD-------GGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SCSSCTTTCC-------CSSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCcCCCCCC-------CCCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 5668999996 345789999977777777752 234788899999754
No 130
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=24.13 E-value=5.1 Score=35.14 Aligned_cols=32 Identities=22% Similarity=0.270 Sum_probs=24.9
Q ss_pred HHHhhcCCCCCCChhhcccccCCCCCCCCCCC
Q 001373 72 YERREGNQACPQCKTRYKRIKGSPRVDGDEEE 103 (1091)
Q Consensus 72 yerkeG~~~CpqCkt~Ykr~kgsprv~gd~ee 103 (1091)
|++.+|.-.|+.|+..|--..|=|..--||..
T Consensus 20 ~~~~~~~LiC~~cg~~YPI~dGIPvmL~~Ear 51 (68)
T 2jr6_A 20 YHQDKQELWSRQAKLAYPIKDGIPYMLENEAR 51 (68)
T ss_dssp EETTTTEEEETTTTEEEEEETTEECCCTTTCE
T ss_pred EeCCCCEEEcCCCCcEecCCCCeeeeChhhcc
Confidence 33456778999999999999999977766533
No 131
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=24.10 E-value=54 Score=27.62 Aligned_cols=24 Identities=25% Similarity=0.596 Sum_probs=12.7
Q ss_pred cccccCc-ccccc-CCCCccccCCCCCC
Q 001373 38 ICQICGD-EIEIT-DNGEPFVACNECAF 63 (1091)
Q Consensus 38 ~C~iCgd-~vg~~-~~Ge~fvaC~eC~f 63 (1091)
.|..||. ++-.+ +.|| +-|.+||+
T Consensus 13 ~Cp~C~~~~lv~D~~~ge--~vC~~CGl 38 (58)
T 1dl6_A 13 TCPNHPDAILVEDYRAGD--MICPECGL 38 (58)
T ss_dssp SBTTBSSSCCEECSSSCC--EECTTTCC
T ss_pred cCcCCCCCceeEeCCCCe--EEeCCCCC
Confidence 6777765 34443 3455 44555543
No 132
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=23.86 E-value=32 Score=29.75 Aligned_cols=46 Identities=28% Similarity=0.660 Sum_probs=35.3
Q ss_pred cCCccccccCccccccCCCCccccCCCCCCCcchhhHHHH---HhhcCCCCCCChh
Q 001373 34 LSGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYE---RREGNQACPQCKT 86 (1091)
Q Consensus 34 ~~~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeye---rkeG~~~CpqCkt 86 (1091)
.++..|.+|++ |...+-|..|.-..=-.|..-- .-+|.=.||.|+.
T Consensus 10 ~~~~~C~vC~~-------~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~ 58 (66)
T 2lri_C 10 APGARCGVCGD-------GTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSG 58 (66)
T ss_dssp CTTCCCTTTSC-------CTTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTT
T ss_pred CCCCCcCCCCC-------CCeEEECCCCCCceecccCCCccCcCCCCCEECccccC
Confidence 35668999985 3347889999988888998533 3378899999975
No 133
>2ksl_A U1-agatoxin-TA1A; insecticidal toxin, spider toxin, neurotoxin, crustacean hyperglycemic hormone, MOLT-inhibiting hormone; NMR {Tegenaria agrestis}
Probab=23.86 E-value=3 Score=33.23 Aligned_cols=26 Identities=27% Similarity=0.851 Sum_probs=19.2
Q ss_pred CCccccccCccccccC----CCCccccCCC
Q 001373 35 SGQICQICGDEIEITD----NGEPFVACNE 60 (1091)
Q Consensus 35 ~~~~C~iCgd~vg~~~----~Ge~fvaC~e 60 (1091)
++.+|.-|||.|..-+ +.++..||||
T Consensus 19 ksnvcngcgdqvaaceaecfrndvytache 48 (51)
T 2ksl_A 19 KSNVCNGCGDQVAACEAECFRNDVYTACHE 48 (51)
T ss_dssp HHHHHHHHCSCHHHHHHTTSCSHHHHHHHH
T ss_pred cccccccchhHHHHHHHHHHhhhHHHHHHh
Confidence 3568999999986542 5677788875
No 134
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=23.77 E-value=21 Score=40.18 Aligned_cols=43 Identities=28% Similarity=0.717 Sum_probs=30.8
Q ss_pred CccccccCccccccCCCCccccCCCCCCC-cchhhHHHHHhhcCCCCCCChhhccc
Q 001373 36 GQICQICGDEIEITDNGEPFVACNECAFP-VCRPCYEYERREGNQACPQCKTRYKR 90 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~fp-vCrpCyeyerkeG~~~CpqCkt~Ykr 90 (1091)
...|.||-+..- .-++.+ |+-- .|+.|..- -..||-|+++.++
T Consensus 295 ~~~C~IC~~~~~----~~v~lp---CgH~~fC~~C~~~-----~~~CP~CR~~i~~ 338 (345)
T 3t6p_A 295 ERTCKVCMDKEV----SVVFIP---CGHLVVCQECAPS-----LRKCPICRGIIKG 338 (345)
T ss_dssp TCBCTTTSSSBC----CEEEET---TCCEEECTTTGGG-----CSBCTTTCCBCCE
T ss_pred CCCCCccCCcCC----ceEEcC---CCChhHhHHHHhc-----CCcCCCCCCCccC
Confidence 458999998742 123555 4666 89999852 2789999999865
No 135
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=23.13 E-value=28 Score=35.97 Aligned_cols=54 Identities=26% Similarity=0.572 Sum_probs=35.7
Q ss_pred CCccccccCccccccCCCCccccCCCCCCCcchhhH---H--HHHh-----hcCCCCCCChhhc
Q 001373 35 SGQICQICGDEIEITDNGEPFVACNECAFPVCRPCY---E--YERR-----EGNQACPQCKTRY 88 (1091)
Q Consensus 35 ~~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCy---e--yerk-----eG~~~CpqCkt~Y 88 (1091)
+|+.|.+|+..-.-++.+...+.|..|..=+=..|- + +|.- +..=.||.|...-
T Consensus 1 ~G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 1 SGNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp -CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred CcCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 478999998765444445679999999865544443 2 3322 1367999997653
No 136
>3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} SCOP: c.68.1.0 PDB: 3q7u_A* 3okr_A 2xwn_A*
Probab=22.81 E-value=98 Score=32.37 Aligned_cols=28 Identities=11% Similarity=0.178 Sum_probs=23.5
Q ss_pred CCEEEEecCCCCCCcHHHHHHHHHhhcC
Q 001373 568 APYLLNVDCDHYINNSKALREAMCFMMD 595 (1091)
Q Consensus 568 gp~Il~lDcD~~~~~p~~Lr~amcff~D 595 (1091)
.++|+++|||+=.-.++.+++.+-.+.+
T Consensus 100 ~d~Vlv~~~d~Pli~~~~i~~li~~~~~ 127 (231)
T 3q80_A 100 PEFVLVHDAARALTPPALVARVVEALRD 127 (231)
T ss_dssp CSEEEECCTTCTTCCHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCcCCCCHHHHHHHHHHHhh
Confidence 5899999999855679999999887755
No 137
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=22.38 E-value=4.2 Score=35.80 Aligned_cols=32 Identities=13% Similarity=0.091 Sum_probs=24.7
Q ss_pred HHHhhcCCCCCCChhhcccccCCCCCCCCCCC
Q 001373 72 YERREGNQACPQCKTRYKRIKGSPRVDGDEEE 103 (1091)
Q Consensus 72 yerkeG~~~CpqCkt~Ykr~kgsprv~gd~ee 103 (1091)
|++.+|.-.|+.|+..|--..|=|..--||..
T Consensus 20 ~~~~~~~LiC~~cg~~YPI~dGIPvmL~~ear 51 (69)
T 2pk7_A 20 LSADKTELISKGAGLAYPIRDGIPVMLESEAR 51 (69)
T ss_dssp ECTTSSEEEETTTTEEEEEETTEECCCGGGCE
T ss_pred EeCCCCEEEcCCCCcEecCcCCeeeeChhhcc
Confidence 33446778999999999999999877666543
No 138
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=22.07 E-value=20 Score=30.29 Aligned_cols=54 Identities=20% Similarity=0.525 Sum_probs=34.1
Q ss_pred CCccccccCccccccCCCCccccCCCCCCCcchhhHHHHHh----hcCCCCCCChhhcccc
Q 001373 35 SGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERR----EGNQACPQCKTRYKRI 91 (1091)
Q Consensus 35 ~~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerk----eG~~~CpqCkt~Ykr~ 91 (1091)
.+..|.+|+..- .+++..|+|..|.-=.=-.|.....+ ...-.||.|..+..|.
T Consensus 5 e~~~C~~C~~~~---~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k~~~~ 62 (64)
T 1we9_A 5 SSGQCGACGESY---AADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKSGPS 62 (64)
T ss_dssp SCCCCSSSCCCC---CSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTTCSS
T ss_pred CCCCCCCCCCcc---CCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCcCCCC
Confidence 355899998752 34678999998843333344433222 2568899998765443
No 139
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=20.28 E-value=30 Score=27.88 Aligned_cols=45 Identities=27% Similarity=0.822 Sum_probs=31.4
Q ss_pred cccccCccccccCCCCccccCCCCCCCcchhhHH---HHHhhcCCCCCCChh
Q 001373 38 ICQICGDEIEITDNGEPFVACNECAFPVCRPCYE---YERREGNQACPQCKT 86 (1091)
Q Consensus 38 ~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCye---yerkeG~~~CpqCkt 86 (1091)
.|.+|++. .+++..+-|..|.-..=..|+. .+.-+|.=.||.|..
T Consensus 2 ~C~vC~~~----~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKK----GEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCS----SCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCC----CCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 59999875 2466789999887554456663 123467888999964
Done!