BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 001374
         (1091 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3NPK|A Chain A, The Crystal Structure Of Geranyltranstransferase From
           Campylobacter Jejuni
 pdb|3NPK|B Chain B, The Crystal Structure Of Geranyltranstransferase From
           Campylobacter Jejuni
          Length = 291

 Score = 32.0 bits (71), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 28/49 (57%)

Query: 41  QDNYKKPKYVQISVESYSHLTGLENQVKTNEEQVQTMEEQIKELNEKLS 89
           Q+   KP    I   S+ +L GLE  +KT E  +   E+ +++LNEKL+
Sbjct: 224 QEQSGKPTNNDIHKNSFVNLLGLEQAIKTKENLLNECEQDLEKLNEKLA 272


>pdb|3GAA|A Chain A, The Crystal Structure Of The Protein With Unknown Function
           From Thermoplasma Acidophilum
 pdb|3GAA|B Chain B, The Crystal Structure Of The Protein With Unknown Function
           From Thermoplasma Acidophilum
 pdb|3GAA|C Chain C, The Crystal Structure Of The Protein With Unknown Function
           From Thermoplasma Acidophilum
 pdb|3GAA|D Chain D, The Crystal Structure Of The Protein With Unknown Function
           From Thermoplasma Acidophilum
 pdb|3GAA|E Chain E, The Crystal Structure Of The Protein With Unknown Function
           From Thermoplasma Acidophilum
          Length = 252

 Score = 30.8 bits (68), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 15/25 (60%), Positives = 19/25 (76%)

Query: 63  LENQVKTNEEQVQTMEEQIKELNEK 87
           LE QVK  +EQ++ +EEQ KEL EK
Sbjct: 219 LEEQVKALDEQIKKIEEQYKELQEK 243


>pdb|3I4F|A Chain A, Structure Of Putative 3-oxoacyl-reductase From Bacillus
           Thuringiensis
 pdb|3I4F|B Chain B, Structure Of Putative 3-oxoacyl-reductase From Bacillus
           Thuringiensis
 pdb|3I4F|C Chain C, Structure Of Putative 3-oxoacyl-reductase From Bacillus
           Thuringiensis
 pdb|3I4F|D Chain D, Structure Of Putative 3-oxoacyl-reductase From Bacillus
           Thuringiensis
          Length = 264

 Score = 30.8 bits (68), Expect = 4.2,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 29/46 (63%), Gaps = 4/46 (8%)

Query: 69  TNEEQVQTMEEQIKELNEKLSAANSEISAKEDLVKQHTKVAEEAVS 114
           ++   ++TM+E  K++ E+L    ++++ KEDL     K+ EEA+S
Sbjct: 40  SDTTAMETMKETYKDVEERLQFVQADVTKKEDL----HKIVEEAMS 81


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.307    0.123    0.330 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,744,462
Number of Sequences: 62578
Number of extensions: 939100
Number of successful extensions: 2648
Number of sequences better than 100.0: 59
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 2493
Number of HSP's gapped (non-prelim): 173
length of query: 1091
length of database: 14,973,337
effective HSP length: 109
effective length of query: 982
effective length of database: 8,152,335
effective search space: 8005592970
effective search space used: 8005592970
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 57 (26.6 bits)