Query 001374
Match_columns 1091
No_of_seqs 265 out of 292
Neff 4.8
Searched_HMMs 46136
Date Thu Mar 28 23:11:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001374.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001374hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05911 DUF869: Plant protein 100.0 1E-149 3E-154 1341.7 79.8 766 98-981 1-769 (769)
2 PF05911 DUF869: Plant protein 99.5 4.3E-09 9.3E-14 129.5 54.8 38 579-616 430-467 (769)
3 TIGR02169 SMC_prok_A chromosom 99.5 1.1E-06 2.4E-11 113.0 75.5 51 361-411 449-499 (1164)
4 TIGR02169 SMC_prok_A chromosom 99.3 2.3E-06 4.9E-11 110.2 64.9 108 193-300 255-363 (1164)
5 KOG0996 Structural maintenance 99.3 5.6E-06 1.2E-10 103.6 59.5 129 805-934 774-905 (1293)
6 TIGR02168 SMC_prok_B chromosom 99.2 9.1E-05 2E-09 95.4 79.3 105 820-924 800-904 (1179)
7 KOG0161 Myosin class II heavy 99.1 9.6E-05 2.1E-09 98.6 64.8 89 66-154 1056-1144(1930)
8 COG1196 Smc Chromosome segrega 99.1 0.00041 8.8E-09 91.0 70.5 46 116-161 241-286 (1163)
9 KOG0161 Myosin class II heavy 99.0 0.001 2.2E-08 89.4 68.5 108 196-303 1013-1120(1930)
10 TIGR00606 rad50 rad50. This fa 98.9 0.0011 2.4E-08 88.0 69.6 171 78-248 188-371 (1311)
11 COG1196 Smc Chromosome segrega 98.9 0.0011 2.4E-08 87.0 69.8 59 78-136 231-289 (1163)
12 PRK02224 chromosome segregatio 98.8 0.0026 5.7E-08 81.0 65.7 46 365-410 347-392 (880)
13 PRK02224 chromosome segregatio 98.7 0.0032 6.9E-08 80.2 71.1 112 814-926 577-693 (880)
14 KOG0964 Structural maintenance 98.6 0.0054 1.2E-07 76.6 49.4 93 146-244 188-292 (1200)
15 TIGR00606 rad50 rad50. This fa 98.6 0.011 2.4E-07 78.8 66.3 63 172-234 402-464 (1311)
16 TIGR02168 SMC_prok_B chromosom 98.5 0.011 2.5E-07 76.4 79.9 27 944-970 914-940 (1179)
17 KOG0250 DNA repair protein RAD 98.4 0.026 5.6E-07 72.0 57.4 60 808-867 660-719 (1074)
18 PRK03918 chromosome segregatio 98.3 0.029 6.2E-07 71.5 71.7 15 1027-1041 814-828 (880)
19 KOG4674 Uncharacterized conser 98.1 0.12 2.7E-06 69.4 68.3 186 119-304 229-471 (1822)
20 PRK04863 mukB cell division pr 98.0 0.21 4.5E-06 67.5 65.9 99 830-928 935-1048(1486)
21 PF07888 CALCOCO1: Calcium bin 97.8 0.044 9.6E-07 66.3 33.6 43 121-163 150-192 (546)
22 KOG0996 Structural maintenance 97.8 0.28 6.1E-06 63.3 58.1 64 74-137 343-414 (1293)
23 PF00038 Filament: Intermediat 97.8 0.075 1.6E-06 59.9 33.5 38 115-152 97-134 (312)
24 PRK04778 septation ring format 97.8 0.01 2.3E-07 72.6 28.5 230 140-385 254-508 (569)
25 KOG0933 Structural maintenance 97.8 0.28 6.1E-06 62.4 54.3 195 102-300 246-447 (1174)
26 KOG0612 Rho-associated, coiled 97.7 0.044 9.4E-07 70.5 32.0 240 78-330 493-740 (1317)
27 PF00261 Tropomyosin: Tropomyo 97.6 0.065 1.4E-06 58.8 29.2 35 117-151 32-66 (237)
28 PF00261 Tropomyosin: Tropomyo 97.6 0.038 8.1E-07 60.6 27.3 40 116-155 66-105 (237)
29 PF12128 DUF3584: Protein of u 97.6 0.63 1.4E-05 62.2 71.5 64 240-303 471-534 (1201)
30 KOG4674 Uncharacterized conser 97.6 0.8 1.7E-05 62.2 65.4 79 73-165 137-215 (1822)
31 PF12128 DUF3584: Protein of u 97.6 0.74 1.6E-05 61.5 60.9 22 953-974 772-793 (1201)
32 KOG0977 Nuclear envelope prote 97.6 0.016 3.5E-07 69.9 24.7 105 90-201 148-261 (546)
33 KOG1029 Endocytic adaptor prot 97.5 0.13 2.8E-06 63.6 30.8 182 100-303 335-516 (1118)
34 PF10174 Cast: RIM-binding pro 97.4 0.1 2.2E-06 66.1 29.2 84 74-164 338-421 (775)
35 KOG0933 Structural maintenance 97.3 1 2.2E-05 57.6 53.7 243 64-325 243-500 (1174)
36 PF07888 CALCOCO1: Calcium bin 97.3 0.41 8.8E-06 58.4 32.3 45 109-153 194-238 (546)
37 PHA02562 46 endonuclease subun 97.3 0.12 2.5E-06 62.7 28.4 68 220-287 333-400 (562)
38 PRK03918 chromosome segregatio 97.3 1.1 2.3E-05 57.6 70.6 27 365-391 457-483 (880)
39 PF10174 Cast: RIM-binding pro 97.3 1 2.3E-05 57.3 55.3 118 809-927 436-561 (775)
40 KOG0977 Nuclear envelope prote 97.3 0.47 1E-05 57.9 32.4 292 78-401 41-362 (546)
41 PRK11637 AmiB activator; Provi 97.2 0.2 4.3E-06 59.4 28.8 89 77-172 45-133 (428)
42 KOG0250 DNA repair protein RAD 97.2 1.4 3E-05 57.1 57.4 111 807-917 666-786 (1074)
43 PF09726 Macoilin: Transmembra 97.2 0.23 5.1E-06 62.4 30.0 146 118-271 422-578 (697)
44 PRK11637 AmiB activator; Provi 97.2 0.32 6.9E-06 57.7 29.3 42 119-160 94-135 (428)
45 PF12718 Tropomyosin_1: Tropom 97.1 0.1 2.2E-06 53.5 21.1 112 812-927 3-114 (143)
46 PRK09039 hypothetical protein; 97.1 0.04 8.7E-07 63.7 20.1 67 804-870 41-107 (343)
47 KOG1029 Endocytic adaptor prot 97.0 0.16 3.4E-06 62.8 24.0 73 236-308 435-507 (1118)
48 KOG1003 Actin filament-coating 96.9 0.14 3.1E-06 54.7 20.6 169 810-978 5-177 (205)
49 PF14662 CCDC155: Coiled-coil 96.9 0.24 5.1E-06 53.0 22.3 164 806-971 19-191 (193)
50 KOG0612 Rho-associated, coiled 96.9 2.9 6.2E-05 54.9 36.4 38 129-166 488-525 (1317)
51 PF08317 Spc7: Spc7 kinetochor 96.9 0.82 1.8E-05 52.6 28.2 170 149-325 114-290 (325)
52 PF05701 WEMBL: Weak chloropla 96.8 2 4.4E-05 52.6 41.1 219 73-301 35-263 (522)
53 PHA02562 46 endonuclease subun 96.8 0.39 8.4E-06 58.3 26.6 129 184-326 229-373 (562)
54 COG1579 Zn-ribbon protein, pos 96.8 0.18 4E-06 55.7 21.0 48 880-927 90-137 (239)
55 PRK04863 mukB cell division pr 96.8 4.4 9.6E-05 55.3 61.2 195 107-305 283-488 (1486)
56 PF00038 Filament: Intermediat 96.7 1.6 3.4E-05 49.4 31.7 60 74-133 77-136 (312)
57 KOG0976 Rho/Rac1-interacting s 96.7 3 6.4E-05 52.4 35.9 51 365-415 370-437 (1265)
58 PF06160 EzrA: Septation ring 96.7 2.3 5E-05 52.6 31.7 144 182-325 306-458 (560)
59 PF05667 DUF812: Protein of un 96.7 0.32 6.9E-06 60.2 24.3 51 116-166 323-373 (594)
60 PF12718 Tropomyosin_1: Tropom 96.7 0.35 7.7E-06 49.6 20.8 63 236-298 78-140 (143)
61 PF15070 GOLGA2L5: Putative go 96.6 1.3 2.8E-05 55.3 29.4 56 357-412 192-247 (617)
62 KOG0963 Transcription factor/C 96.6 2.1 4.5E-05 52.7 30.0 189 121-313 235-449 (629)
63 PF10481 CENP-F_N: Cenp-F N-te 96.6 0.76 1.6E-05 51.4 23.8 159 808-973 17-190 (307)
64 KOG0994 Extracellular matrix g 96.6 3.8 8.1E-05 53.4 32.2 115 198-312 1572-1686(1758)
65 KOG0995 Centromere-associated 96.6 3.1 6.7E-05 50.9 34.2 283 100-414 169-479 (581)
66 COG1579 Zn-ribbon protein, pos 96.6 0.3 6.4E-06 54.1 20.7 49 810-858 32-80 (239)
67 PRK09039 hypothetical protein; 96.5 0.18 4E-06 58.4 20.1 120 808-927 52-178 (343)
68 PF05667 DUF812: Protein of un 96.5 0.33 7.2E-06 60.1 23.3 163 809-971 328-531 (594)
69 KOG0994 Extracellular matrix g 96.5 4.7 0.0001 52.6 45.1 16 660-675 1470-1485(1758)
70 PRK04778 septation ring format 96.5 2.2 4.7E-05 52.8 30.0 15 291-305 452-466 (569)
71 PF05701 WEMBL: Weak chloropla 96.5 3.4 7.4E-05 50.7 40.5 317 73-413 173-513 (522)
72 KOG0980 Actin-binding protein 96.5 1.1 2.3E-05 56.8 26.8 28 139-166 362-389 (980)
73 PF10473 CENP-F_leu_zip: Leuci 96.5 0.3 6.4E-06 50.1 18.7 116 180-295 1-116 (140)
74 PF09726 Macoilin: Transmembra 96.4 0.78 1.7E-05 57.9 25.9 116 187-303 543-659 (697)
75 PF15070 GOLGA2L5: Putative go 96.4 4.3 9.3E-05 50.8 33.8 78 197-274 154-231 (617)
76 KOG1003 Actin filament-coating 96.4 1.5 3.3E-05 47.1 23.8 157 118-293 1-157 (205)
77 PF09730 BicD: Microtubule-ass 96.4 4.8 0.0001 51.0 68.0 283 103-414 5-319 (717)
78 KOG0963 Transcription factor/C 96.2 5.2 0.00011 49.4 34.7 50 359-409 309-358 (629)
79 COG4942 Membrane-bound metallo 96.2 1 2.2E-05 53.5 23.3 73 809-881 38-110 (420)
80 COG4372 Uncharacterized protei 96.2 3 6.5E-05 48.8 26.2 42 120-161 101-142 (499)
81 KOG0964 Structural maintenance 96.1 7 0.00015 50.5 59.8 216 74-297 186-428 (1200)
82 KOG0971 Microtubule-associated 96.1 6.9 0.00015 50.1 33.8 194 76-298 228-442 (1243)
83 PF15619 Lebercilin: Ciliary p 96.1 1.6 3.5E-05 47.0 22.7 131 73-218 13-154 (194)
84 TIGR03185 DNA_S_dndD DNA sulfu 96.0 3.5 7.6E-05 51.7 28.9 75 217-291 391-467 (650)
85 KOG4673 Transcription factor T 96.0 6.2 0.00013 49.1 34.6 163 149-325 446-619 (961)
86 PF04849 HAP1_N: HAP1 N-termin 95.8 1.9 4.2E-05 49.4 22.9 173 132-304 87-293 (306)
87 PF04849 HAP1_N: HAP1 N-termin 95.8 2.3 5E-05 48.7 23.6 98 195-299 205-302 (306)
88 PF14915 CCDC144C: CCDC144C pr 95.8 4.6 9.9E-05 46.1 25.3 140 74-218 86-243 (305)
89 TIGR02680 conserved hypothetic 95.8 4.5 9.9E-05 55.0 30.1 92 195-289 874-965 (1353)
90 PRK11281 hypothetical protein; 95.7 4.1 8.8E-05 54.2 28.4 124 180-303 126-250 (1113)
91 PF10473 CENP-F_leu_zip: Leuci 95.6 2.4 5.1E-05 43.7 20.3 107 813-926 7-113 (140)
92 PF08317 Spc7: Spc7 kinetochor 95.6 0.64 1.4E-05 53.5 18.3 30 946-975 259-292 (325)
93 PF01576 Myosin_tail_1: Myosin 95.6 0.0039 8.5E-08 79.6 0.5 108 810-917 744-851 (859)
94 PF05010 TACC: Transforming ac 95.5 2.8 6.2E-05 45.7 21.6 110 865-974 76-190 (207)
95 TIGR01843 type_I_hlyD type I s 95.4 2 4.3E-05 49.9 22.1 25 946-970 247-271 (423)
96 PF07926 TPR_MLP1_2: TPR/MLP1/ 95.4 1.5 3.3E-05 44.1 18.2 72 894-971 60-131 (132)
97 PF09789 DUF2353: Uncharacteri 95.4 3 6.5E-05 48.2 22.5 30 357-386 193-222 (319)
98 PF15619 Lebercilin: Ciliary p 95.4 1.7 3.6E-05 47.0 19.4 31 810-840 13-43 (194)
99 PF13851 GAS: Growth-arrest sp 95.4 5.2 0.00011 43.4 27.2 177 125-322 13-189 (201)
100 PF09755 DUF2046: Uncharacteri 95.3 7.3 0.00016 44.8 30.9 58 121-182 34-91 (310)
101 COG3883 Uncharacterized protei 95.2 4 8.7E-05 46.0 22.3 154 810-966 39-218 (265)
102 PRK10869 recombination and rep 95.2 9.8 0.00021 47.1 27.8 119 255-414 264-386 (553)
103 PF04156 IncA: IncA protein; 95.2 1.2 2.6E-05 47.0 17.4 104 817-920 82-185 (191)
104 PF04156 IncA: IncA protein; 94.9 1.6 3.5E-05 45.9 17.6 109 187-295 79-187 (191)
105 KOG4643 Uncharacterized coiled 94.9 18 0.00039 47.1 52.4 38 126-164 60-97 (1195)
106 KOG4643 Uncharacterized coiled 94.7 20 0.00043 46.7 29.3 114 187-305 486-599 (1195)
107 TIGR00634 recN DNA repair prot 94.7 8.1 0.00018 47.8 25.4 124 254-414 268-391 (563)
108 PF08614 ATG16: Autophagy prot 94.7 0.23 5.1E-06 52.9 10.7 99 807-905 79-177 (194)
109 PF06818 Fez1: Fez1; InterPro 94.7 6.3 0.00014 42.9 21.2 52 121-172 31-82 (202)
110 PF10168 Nup88: Nuclear pore c 94.6 4.1 8.9E-05 51.9 22.9 117 807-924 541-670 (717)
111 PF08614 ATG16: Autophagy prot 94.6 0.27 5.9E-06 52.5 10.8 107 193-299 71-177 (194)
112 KOG0946 ER-Golgi vesicle-tethe 94.5 1.8 3.8E-05 54.6 18.7 57 812-868 660-716 (970)
113 PF10481 CENP-F_N: Cenp-F N-te 94.5 3.6 7.7E-05 46.3 19.3 104 189-299 18-128 (307)
114 KOG0982 Centrosomal protein Nu 94.5 6.9 0.00015 46.5 22.4 106 218-325 312-417 (502)
115 smart00787 Spc7 Spc7 kinetocho 94.5 11 0.00024 43.5 24.3 152 174-325 128-285 (312)
116 smart00787 Spc7 Spc7 kinetocho 94.5 2 4.3E-05 49.5 18.2 34 943-976 251-288 (312)
117 KOG1899 LAR transmembrane tyro 94.5 3.5 7.7E-05 50.7 20.5 89 814-902 109-197 (861)
118 TIGR01843 type_I_hlyD type I s 94.3 12 0.00027 43.4 24.7 10 286-295 252-261 (423)
119 PF07926 TPR_MLP1_2: TPR/MLP1/ 94.3 4.4 9.5E-05 40.9 18.2 30 812-841 6-35 (132)
120 PRK01156 chromosome segregatio 94.3 24 0.00052 45.9 68.7 84 837-924 629-712 (895)
121 KOG2991 Splicing regulator [RN 94.3 9.2 0.0002 42.8 21.5 214 95-313 76-318 (330)
122 COG4477 EzrA Negative regulato 94.1 19 0.00041 44.2 28.9 218 185-419 305-537 (570)
123 PF12795 MscS_porin: Mechanose 94.1 6.2 0.00013 43.5 20.5 179 114-300 31-212 (240)
124 KOG1899 LAR transmembrane tyro 94.0 11 0.00024 46.6 23.4 100 808-907 110-216 (861)
125 PF03148 Tektin: Tektin family 93.9 8.8 0.00019 45.4 22.4 130 165-308 241-383 (384)
126 COG3883 Uncharacterized protei 93.8 5 0.00011 45.3 19.0 120 181-303 37-178 (265)
127 PF10186 Atg14: UV radiation r 93.8 4 8.7E-05 45.3 18.6 84 219-302 58-141 (302)
128 PF15066 CAGE1: Cancer-associa 93.8 20 0.00044 43.2 24.5 142 148-301 312-453 (527)
129 KOG0978 E3 ubiquitin ligase in 93.7 26 0.00057 44.5 31.0 131 191-321 505-638 (698)
130 TIGR01000 bacteriocin_acc bact 93.7 14 0.0003 44.5 24.0 22 278-299 289-310 (457)
131 PRK11281 hypothetical protein; 93.7 22 0.00049 47.5 27.5 181 110-291 66-252 (1113)
132 PF14073 Cep57_CLD: Centrosome 93.6 4.1 9E-05 43.4 16.9 122 806-927 8-154 (178)
133 PF13851 GAS: Growth-arrest sp 93.6 13 0.00028 40.3 21.3 47 809-855 34-80 (201)
134 PF09728 Taxilin: Myosin-like 93.4 19 0.00041 41.6 31.2 202 79-300 103-306 (309)
135 PF09787 Golgin_A5: Golgin sub 93.3 27 0.00058 43.0 29.4 156 138-305 158-320 (511)
136 KOG0979 Structural maintenance 93.2 17 0.00036 47.4 24.1 154 141-298 201-357 (1072)
137 PF05557 MAD: Mitotic checkpoi 93.2 0.23 5E-06 62.7 8.5 40 359-401 605-644 (722)
138 TIGR03185 DNA_S_dndD DNA sulfu 93.1 32 0.00069 43.4 34.3 47 278-325 389-435 (650)
139 PF00769 ERM: Ezrin/radixin/mo 93.1 9 0.0002 42.8 19.6 168 807-974 10-204 (246)
140 PRK01156 chromosome segregatio 93.1 38 0.00081 44.2 63.8 17 834-850 591-607 (895)
141 KOG0980 Actin-binding protein 93.0 37 0.00079 43.9 28.3 150 151-307 391-549 (980)
142 TIGR03007 pepcterm_ChnLen poly 92.9 7.9 0.00017 46.7 20.5 26 805-830 164-189 (498)
143 PF04111 APG6: Autophagy prote 92.9 1.7 3.7E-05 50.0 14.1 91 838-928 44-134 (314)
144 KOG1937 Uncharacterized conser 92.9 25 0.00053 42.4 23.2 90 100-201 248-337 (521)
145 COG0497 RecN ATPase involved i 92.8 32 0.00069 42.8 25.3 88 286-414 296-387 (557)
146 PF12325 TMF_TATA_bd: TATA ele 92.8 5.2 0.00011 40.2 15.5 94 809-906 16-109 (120)
147 PF00769 ERM: Ezrin/radixin/mo 92.5 4.3 9.4E-05 45.2 16.2 50 813-862 2-51 (246)
148 PF13514 AAA_27: AAA domain 92.5 51 0.0011 44.3 40.1 307 71-414 624-952 (1111)
149 KOG0971 Microtubule-associated 92.4 44 0.00095 43.4 60.6 111 800-923 939-1049(1243)
150 KOG0979 Structural maintenance 92.4 31 0.00067 45.2 24.8 173 129-303 175-355 (1072)
151 PF15450 DUF4631: Domain of un 92.4 34 0.00073 42.0 25.0 122 177-308 389-514 (531)
152 KOG4360 Uncharacterized coiled 92.4 2.9 6.2E-05 50.5 15.1 107 880-996 220-326 (596)
153 PF06818 Fez1: Fez1; InterPro 92.4 2.4 5.3E-05 46.0 13.4 89 157-257 18-106 (202)
154 TIGR01005 eps_transp_fam exopo 92.3 8.4 0.00018 49.1 20.5 61 229-293 343-403 (754)
155 PF15254 CCDC14: Coiled-coil d 92.3 15 0.00032 46.7 21.5 153 197-393 388-541 (861)
156 PRK12704 phosphodiesterase; Pr 92.3 12 0.00026 46.1 20.9 22 176-197 62-83 (520)
157 PF10146 zf-C4H2: Zinc finger- 92.1 4.6 9.9E-05 44.8 15.6 27 169-196 3-29 (230)
158 KOG0946 ER-Golgi vesicle-tethe 92.0 46 0.001 42.8 25.8 35 378-412 852-886 (970)
159 PF10186 Atg14: UV radiation r 92.0 15 0.00032 40.9 19.7 22 152-173 26-47 (302)
160 PF13870 DUF4201: Domain of un 91.9 15 0.00032 38.7 18.4 75 853-927 44-118 (177)
161 TIGR03319 YmdA_YtgF conserved 91.8 20 0.00043 44.2 22.1 23 176-198 56-78 (514)
162 PF10498 IFT57: Intra-flagella 91.8 6.5 0.00014 46.3 17.2 90 864-964 265-354 (359)
163 PF13870 DUF4201: Domain of un 91.8 19 0.00041 37.9 19.9 133 832-969 44-176 (177)
164 TIGR00634 recN DNA repair prot 91.7 25 0.00053 43.6 23.0 36 115-150 169-204 (563)
165 PF10212 TTKRSYEDQ: Predicted 91.7 18 0.00039 44.4 20.9 74 886-972 441-514 (518)
166 TIGR03007 pepcterm_ChnLen poly 91.6 12 0.00027 45.1 19.9 28 138-165 164-191 (498)
167 PF10498 IFT57: Intra-flagella 91.5 6.3 0.00014 46.3 16.7 118 810-927 221-348 (359)
168 PF12325 TMF_TATA_bd: TATA ele 91.4 5.4 0.00012 40.1 13.8 90 832-921 18-110 (120)
169 COG4942 Membrane-bound metallo 91.4 39 0.00084 40.7 31.8 45 249-293 200-244 (420)
170 PF14662 CCDC155: Coiled-coil 91.3 25 0.00053 38.2 26.1 167 118-300 19-185 (193)
171 PF04111 APG6: Autophagy prote 91.3 3.7 7.9E-05 47.4 14.3 78 219-296 45-122 (314)
172 PF13166 AAA_13: AAA domain 91.2 31 0.00066 43.6 23.6 58 266-326 417-474 (712)
173 PF14915 CCDC144C: CCDC144C pr 91.2 33 0.00072 39.4 31.5 101 200-300 183-291 (305)
174 PF05384 DegS: Sensor protein 90.8 21 0.00047 37.6 18.1 45 809-853 27-71 (159)
175 PF01576 Myosin_tail_1: Myosin 90.8 0.071 1.5E-06 68.5 0.0 116 810-925 659-782 (859)
176 PF09304 Cortex-I_coil: Cortex 90.8 13 0.00028 36.8 15.2 38 874-911 39-76 (107)
177 COG5185 HEC1 Protein involved 90.6 48 0.001 40.2 29.8 128 186-313 299-433 (622)
178 PF11559 ADIP: Afadin- and alp 90.3 24 0.00051 36.2 17.8 26 885-910 100-125 (151)
179 PF12072 DUF3552: Domain of un 90.2 30 0.00066 37.4 22.9 76 147-222 29-104 (201)
180 PF10168 Nup88: Nuclear pore c 90.1 33 0.00071 44.1 22.2 160 811-973 538-713 (717)
181 KOG4593 Mitotic checkpoint pro 90.1 64 0.0014 40.9 35.1 259 125-395 123-405 (716)
182 COG2433 Uncharacterized conser 90.0 4.5 9.8E-05 49.9 13.9 97 820-927 419-517 (652)
183 PF15254 CCDC14: Coiled-coil d 89.9 16 0.00035 46.4 18.6 116 180-305 432-547 (861)
184 KOG0804 Cytoplasmic Zn-finger 89.8 12 0.00027 44.8 16.8 52 873-924 376-427 (493)
185 KOG0288 WD40 repeat protein Ti 89.6 13 0.00029 44.1 16.8 82 178-259 23-104 (459)
186 PRK10246 exonuclease subunit S 89.6 90 0.0019 41.9 29.9 52 273-324 829-880 (1047)
187 PRK10884 SH3 domain-containing 89.5 5 0.00011 43.8 12.7 22 808-829 92-113 (206)
188 KOG0243 Kinesin-like protein [ 89.4 15 0.00033 48.1 18.7 104 805-908 407-512 (1041)
189 PF15233 SYCE1: Synaptonemal c 89.4 13 0.00028 37.9 14.3 79 816-894 6-84 (134)
190 PF05010 TACC: Transforming ac 89.4 37 0.00081 37.3 26.9 27 274-300 176-202 (207)
191 PF05557 MAD: Mitotic checkpoi 89.2 0.11 2.5E-06 65.4 0.0 26 359-384 349-374 (722)
192 PRK00106 hypothetical protein; 89.1 55 0.0012 40.7 22.4 11 178-188 79-89 (535)
193 KOG2129 Uncharacterized conser 89.1 38 0.00082 40.5 19.8 90 807-909 134-224 (552)
194 PF05483 SCP-1: Synaptonemal c 88.9 78 0.0017 40.2 37.2 230 120-392 404-633 (786)
195 PF05622 HOOK: HOOK protein; 88.7 0.13 2.8E-06 64.9 0.0 68 236-303 457-525 (713)
196 COG5185 HEC1 Protein involved 88.4 24 0.00053 42.6 17.8 33 951-983 399-431 (622)
197 PF07889 DUF1664: Protein of u 88.2 11 0.00024 38.2 13.2 85 167-251 39-123 (126)
198 PF12795 MscS_porin: Mechanose 88.1 46 0.001 36.7 24.2 56 248-303 153-208 (240)
199 KOG4360 Uncharacterized coiled 88.0 64 0.0014 39.6 21.1 90 207-296 202-291 (596)
200 PF15450 DUF4631: Domain of un 88.0 76 0.0017 39.1 27.3 242 110-394 225-475 (531)
201 TIGR03017 EpsF chain length de 88.0 65 0.0014 38.3 22.8 30 136-165 172-201 (444)
202 TIGR03017 EpsF chain length de 87.9 49 0.0011 39.3 20.7 27 805-831 174-200 (444)
203 COG4026 Uncharacterized protei 87.8 7.5 0.00016 42.7 12.4 72 841-912 132-203 (290)
204 PF05335 DUF745: Protein of un 87.7 30 0.00065 37.4 16.9 107 822-928 59-165 (188)
205 PF11559 ADIP: Afadin- and alp 87.7 28 0.0006 35.7 16.1 24 866-889 95-118 (151)
206 TIGR01005 eps_transp_fam exopo 87.6 31 0.00068 44.1 20.0 35 130-164 189-223 (754)
207 KOG0982 Centrosomal protein Nu 87.5 74 0.0016 38.3 24.3 163 135-304 250-420 (502)
208 COG4026 Uncharacterized protei 87.4 11 0.00023 41.6 13.3 34 225-258 157-190 (290)
209 KOG4787 Uncharacterized conser 87.3 71 0.0015 39.8 21.0 187 116-302 334-544 (852)
210 PF08702 Fib_alpha: Fibrinogen 87.3 23 0.0005 36.7 15.2 37 889-925 93-129 (146)
211 KOG2685 Cystoskeletal protein 87.3 65 0.0014 38.6 20.4 148 161-308 250-410 (421)
212 PRK10929 putative mechanosensi 87.1 1.3E+02 0.0028 40.7 33.0 37 110-146 51-90 (1109)
213 KOG0243 Kinesin-like protein [ 87.0 72 0.0016 42.3 22.3 81 810-890 435-515 (1041)
214 PF10146 zf-C4H2: Zinc finger- 86.9 26 0.00057 39.0 16.3 29 898-926 72-100 (230)
215 KOG4403 Cell surface glycoprot 86.8 80 0.0017 38.1 24.3 37 808-844 251-287 (575)
216 KOG1937 Uncharacterized conser 86.8 46 0.001 40.2 18.9 29 942-970 400-428 (521)
217 PF06785 UPF0242: Uncharacteri 86.8 71 0.0015 37.4 20.8 75 198-272 101-175 (401)
218 KOG0995 Centromere-associated 86.3 99 0.0021 38.6 34.6 58 247-304 427-484 (581)
219 PF15290 Syntaphilin: Golgi-lo 86.1 17 0.00038 41.3 14.3 41 818-858 63-103 (305)
220 PF05335 DUF745: Protein of un 86.1 42 0.00091 36.4 16.8 97 811-907 69-165 (188)
221 KOG2991 Splicing regulator [RN 86.0 67 0.0014 36.4 20.6 146 115-260 137-307 (330)
222 KOG0976 Rho/Rac1-interacting s 86.0 1.2E+02 0.0026 39.2 55.6 118 132-260 82-205 (1265)
223 PF09787 Golgin_A5: Golgin sub 85.8 99 0.0021 38.1 28.6 49 366-414 343-397 (511)
224 COG1382 GimC Prefoldin, chaper 85.6 19 0.00041 36.3 13.0 42 886-927 70-111 (119)
225 PRK03947 prefoldin subunit alp 85.6 25 0.00054 35.6 14.3 45 877-921 92-136 (140)
226 KOG0999 Microtubule-associated 85.5 1E+02 0.0023 38.2 27.1 142 130-287 95-236 (772)
227 KOG4809 Rab6 GTPase-interactin 85.5 1E+02 0.0023 38.2 24.3 219 73-321 332-573 (654)
228 KOG0239 Kinesin (KAR3 subfamil 85.4 1.2E+02 0.0026 38.8 23.2 72 233-304 243-317 (670)
229 cd00632 Prefoldin_beta Prefold 85.2 26 0.00056 34.0 13.6 42 879-920 63-104 (105)
230 COG2433 Uncharacterized conser 85.0 16 0.00034 45.5 14.4 69 860-928 438-509 (652)
231 PF11932 DUF3450: Protein of u 84.7 30 0.00065 38.4 15.7 21 492-512 182-202 (251)
232 KOG0972 Huntingtin interacting 84.7 41 0.00089 38.6 16.4 94 864-968 272-365 (384)
233 PF07106 TBPIP: Tat binding pr 84.6 18 0.00039 37.8 13.1 63 807-869 70-134 (169)
234 COG3096 MukB Uncharacterized p 84.4 1.3E+02 0.0029 38.5 53.2 102 873-974 992-1109(1480)
235 KOG4438 Centromere-associated 84.4 77 0.0017 38.2 19.1 172 807-978 143-332 (446)
236 PF06008 Laminin_I: Laminin Do 84.3 76 0.0016 35.5 27.6 29 67-95 47-75 (264)
237 TIGR01000 bacteriocin_acc bact 84.3 1E+02 0.0023 37.1 23.4 17 284-300 288-304 (457)
238 KOG0804 Cytoplasmic Zn-finger 84.1 47 0.001 40.2 17.3 19 284-302 432-450 (493)
239 PF10234 Cluap1: Clusterin-ass 84.0 85 0.0018 35.9 19.4 69 235-303 194-262 (267)
240 COG1382 GimC Prefoldin, chaper 84.0 22 0.00048 35.9 12.7 96 121-222 13-110 (119)
241 COG3074 Uncharacterized protei 83.9 17 0.00037 33.4 10.6 56 211-266 19-74 (79)
242 PF02994 Transposase_22: L1 tr 83.5 2.9 6.3E-05 49.2 7.6 93 833-925 94-190 (370)
243 PF13166 AAA_13: AAA domain 83.5 1.4E+02 0.003 37.9 26.0 11 451-461 533-543 (712)
244 PF03962 Mnd1: Mnd1 family; I 83.5 31 0.00068 37.1 14.6 65 245-312 110-174 (188)
245 PF09789 DUF2353: Uncharacteri 83.2 1E+02 0.0022 36.1 22.9 35 378-412 283-317 (319)
246 PF06785 UPF0242: Uncharacteri 83.1 59 0.0013 38.0 17.0 62 199-260 95-156 (401)
247 KOG0249 LAR-interacting protei 83.0 51 0.0011 41.8 17.6 37 128-164 77-113 (916)
248 KOG3647 Predicted coiled-coil 83.0 55 0.0012 37.2 16.3 18 149-166 53-70 (338)
249 PF14197 Cep57_CLD_2: Centroso 82.7 13 0.00029 33.9 9.8 65 842-906 3-67 (69)
250 KOG0999 Microtubule-associated 82.5 1.4E+02 0.003 37.2 36.0 172 73-259 9-184 (772)
251 COG4372 Uncharacterized protei 82.4 1.2E+02 0.0026 36.3 34.0 161 119-284 121-284 (499)
252 PRK03947 prefoldin subunit alp 82.3 44 0.00095 33.8 14.5 29 193-221 10-38 (140)
253 COG1842 PspA Phage shock prote 82.2 89 0.0019 34.8 19.9 132 818-964 12-155 (225)
254 PRK10929 putative mechanosensi 82.0 2.1E+02 0.0045 38.9 30.3 16 458-473 441-456 (1109)
255 PF12329 TMF_DNA_bd: TATA elem 81.7 21 0.00046 32.9 10.8 63 190-252 6-68 (74)
256 PF11932 DUF3450: Protein of u 81.7 93 0.002 34.6 18.8 27 239-265 64-90 (251)
257 PF04871 Uso1_p115_C: Uso1 / p 81.6 59 0.0013 33.4 15.0 33 896-928 80-112 (136)
258 PF09728 Taxilin: Myosin-like 81.5 1.1E+02 0.0024 35.5 33.2 91 213-303 170-267 (309)
259 PF08826 DMPK_coil: DMPK coile 81.5 18 0.00039 32.5 9.8 47 860-906 13-59 (61)
260 COG1340 Uncharacterized archae 81.4 1.1E+02 0.0024 35.4 29.2 46 121-166 55-100 (294)
261 PF05384 DegS: Sensor protein 81.1 79 0.0017 33.5 19.3 60 242-301 74-133 (159)
262 KOG2129 Uncharacterized conser 81.0 1.4E+02 0.0029 36.1 20.5 25 160-184 91-116 (552)
263 TIGR02338 gimC_beta prefoldin, 80.8 37 0.00081 33.2 12.9 33 884-916 72-104 (110)
264 TIGR02338 gimC_beta prefoldin, 80.3 41 0.00088 33.0 13.0 36 889-924 70-105 (110)
265 PLN02939 transferase, transfer 80.3 2.2E+02 0.0047 38.1 24.9 72 179-261 202-280 (977)
266 PF07445 priB_priC: Primosomal 80.3 64 0.0014 34.4 15.3 33 940-972 140-172 (173)
267 KOG1853 LIS1-interacting prote 80.2 1.1E+02 0.0024 34.6 23.6 33 892-924 90-122 (333)
268 PF15397 DUF4618: Domain of un 80.2 1.1E+02 0.0025 34.7 18.9 32 115-146 74-106 (258)
269 COG1340 Uncharacterized archae 80.0 1.2E+02 0.0027 35.0 30.6 17 121-137 69-85 (294)
270 PF15456 Uds1: Up-regulated Du 79.7 37 0.00081 34.4 12.7 43 806-849 19-61 (124)
271 PF10212 TTKRSYEDQ: Predicted 79.5 44 0.00096 41.1 15.4 100 804-906 415-514 (518)
272 KOG1962 B-cell receptor-associ 79.3 27 0.00058 38.6 12.3 65 863-927 149-213 (216)
273 KOG0249 LAR-interacting protei 79.3 1.3E+02 0.0027 38.6 19.1 20 1069-1088 893-912 (916)
274 PF07106 TBPIP: Tat binding pr 79.1 28 0.00061 36.3 12.2 6 692-697 21-26 (169)
275 PRK09841 cryptic autophosphory 79.0 43 0.00093 42.9 16.1 33 819-851 263-295 (726)
276 TIGR01010 BexC_CtrB_KpsE polys 78.8 41 0.00088 39.2 14.6 24 946-969 293-316 (362)
277 PF01920 Prefoldin_2: Prefoldi 78.2 48 0.001 31.4 12.5 37 888-924 64-100 (106)
278 KOG2685 Cystoskeletal protein 78.2 1.2E+02 0.0025 36.6 17.8 91 834-924 275-389 (421)
279 PF09738 DUF2051: Double stran 77.9 44 0.00096 38.7 14.2 139 823-975 84-249 (302)
280 PF04582 Reo_sigmaC: Reovirus 77.8 3.7 8E-05 47.5 5.6 24 946-969 134-157 (326)
281 PF03962 Mnd1: Mnd1 family; I 77.6 25 0.00054 37.8 11.5 78 239-323 70-147 (188)
282 PF04012 PspA_IM30: PspA/IM30 77.5 1.1E+02 0.0024 33.1 23.5 68 84-154 10-77 (221)
283 PF05622 HOOK: HOOK protein; 77.5 0.74 1.6E-05 58.2 0.0 175 198-394 181-359 (713)
284 PF10205 KLRAQ: Predicted coil 77.1 43 0.00094 33.0 11.7 67 196-262 5-71 (102)
285 COG1730 GIM5 Predicted prefold 77.0 93 0.002 32.5 14.9 43 816-858 6-48 (145)
286 KOG0288 WD40 repeat protein Ti 76.8 1.1E+02 0.0025 36.7 17.1 28 179-206 10-37 (459)
287 KOG0018 Structural maintenance 76.8 2.8E+02 0.006 37.3 47.0 174 691-910 728-901 (1141)
288 PRK09343 prefoldin subunit bet 76.4 66 0.0014 32.3 13.3 39 814-852 5-43 (121)
289 KOG0978 E3 ubiquitin ligase in 76.3 2.4E+02 0.0052 36.4 47.7 59 869-927 563-621 (698)
290 KOG0240 Kinesin (SMY1 subfamil 76.1 2.2E+02 0.0047 35.8 22.2 37 116-152 336-372 (607)
291 COG3074 Uncharacterized protei 76.0 34 0.00075 31.5 9.9 51 194-244 23-73 (79)
292 PF08172 CASP_C: CASP C termin 75.9 31 0.00066 38.8 12.0 50 871-920 85-134 (248)
293 PRK10869 recombination and rep 75.5 2.2E+02 0.0048 35.6 24.6 65 81-149 134-199 (553)
294 PRK10361 DNA recombination pro 75.3 2.1E+02 0.0046 35.3 26.9 24 131-154 39-62 (475)
295 cd00632 Prefoldin_beta Prefold 75.1 72 0.0016 30.9 12.9 29 880-908 71-99 (105)
296 PF14992 TMCO5: TMCO5 family 75.1 58 0.0013 37.3 13.8 110 185-302 59-172 (280)
297 PF09738 DUF2051: Double stran 74.7 59 0.0013 37.7 14.1 83 843-925 83-165 (302)
298 PRK09343 prefoldin subunit bet 74.6 98 0.0021 31.1 15.0 41 810-850 8-48 (121)
299 KOG2751 Beclin-like protein [S 74.4 1.1E+02 0.0024 37.1 16.2 11 327-337 286-296 (447)
300 PF09730 BicD: Microtubule-ass 74.3 2.7E+02 0.0059 36.1 62.4 153 246-415 266-453 (717)
301 PF04012 PspA_IM30: PspA/IM30 74.2 1.4E+02 0.0029 32.5 24.6 28 276-303 161-188 (221)
302 TIGR02231 conserved hypothetic 74.1 32 0.0007 42.1 12.7 38 262-299 134-171 (525)
303 PRK15422 septal ring assembly 73.6 53 0.0012 31.0 10.8 24 239-262 47-70 (79)
304 PF08647 BRE1: BRE1 E3 ubiquit 73.5 90 0.0019 30.1 13.5 27 224-250 31-57 (96)
305 KOG0239 Kinesin (KAR3 subfamil 73.4 1.3E+02 0.0028 38.5 17.8 106 875-983 223-331 (670)
306 PF14712 Snapin_Pallidin: Snap 73.2 54 0.0012 30.8 11.3 79 841-919 11-90 (92)
307 PF07889 DUF1664: Protein of u 73.0 83 0.0018 32.2 13.1 37 884-920 87-123 (126)
308 KOG4593 Mitotic checkpoint pro 73.0 2.8E+02 0.0061 35.6 56.3 24 905-928 557-580 (716)
309 PRK11519 tyrosine kinase; Prov 73.0 56 0.0012 41.8 14.8 28 805-832 270-297 (719)
310 PRK09841 cryptic autophosphory 72.4 69 0.0015 41.1 15.5 28 805-832 270-297 (726)
311 PF08647 BRE1: BRE1 E3 ubiquit 72.3 89 0.0019 30.1 12.6 42 816-857 3-44 (96)
312 PF09755 DUF2046: Uncharacteri 71.2 2.1E+02 0.0046 33.4 32.1 18 367-384 261-278 (310)
313 PF15066 CAGE1: Cancer-associa 70.5 2.7E+02 0.0058 34.3 23.4 51 175-225 383-433 (527)
314 KOG0018 Structural maintenance 70.4 3.8E+02 0.0083 36.1 53.3 108 806-924 649-756 (1141)
315 PF04582 Reo_sigmaC: Reovirus 70.3 8 0.00017 44.8 5.9 98 831-928 57-154 (326)
316 PF05266 DUF724: Protein of un 70.3 1.1E+02 0.0024 33.2 14.1 72 232-303 111-182 (190)
317 PRK12705 hypothetical protein; 70.1 2.9E+02 0.0062 34.5 23.9 50 164-213 45-94 (508)
318 PF02994 Transposase_22: L1 tr 69.9 10 0.00022 44.8 6.8 93 836-928 90-186 (370)
319 PF12777 MT: Microtubule-bindi 69.2 18 0.00039 42.2 8.6 44 815-858 220-263 (344)
320 PF02601 Exonuc_VII_L: Exonucl 69.1 2.2E+02 0.0047 32.7 17.4 52 106-157 135-187 (319)
321 PF09731 Mitofilin: Mitochondr 68.7 3E+02 0.0066 34.2 26.1 48 141-188 250-298 (582)
322 KOG4807 F-actin binding protei 68.5 2.7E+02 0.0058 33.5 27.4 113 78-193 244-378 (593)
323 KOG0244 Kinesin-like protein [ 67.3 3.8E+02 0.0083 35.5 19.9 67 132-210 471-537 (913)
324 TIGR02231 conserved hypothetic 67.1 56 0.0012 40.2 12.6 33 809-841 71-103 (525)
325 PF10046 BLOC1_2: Biogenesis o 66.5 1.3E+02 0.0028 29.1 14.3 30 894-923 67-96 (99)
326 COG5283 Phage-related tail pro 66.2 3.2E+02 0.007 37.1 19.3 117 809-925 22-138 (1213)
327 PRK04406 hypothetical protein; 66.2 40 0.00087 31.4 8.5 46 196-241 11-56 (75)
328 PF10267 Tmemb_cc2: Predicted 66.2 2.3E+02 0.005 34.2 16.9 19 275-293 300-318 (395)
329 PRK11519 tyrosine kinase; Prov 66.0 1.3E+02 0.0028 38.7 15.9 31 821-851 265-295 (719)
330 KOG1853 LIS1-interacting prote 65.5 2.5E+02 0.0054 32.0 22.0 46 102-147 25-71 (333)
331 PF04102 SlyX: SlyX; InterPro 65.4 33 0.00071 31.2 7.7 50 195-244 3-52 (69)
332 PRK14011 prefoldin subunit alp 65.4 1.4E+02 0.0029 31.2 13.0 43 816-858 3-45 (144)
333 KOG4302 Microtubule-associated 65.4 4E+02 0.0086 34.3 25.1 128 196-325 160-326 (660)
334 PF09731 Mitofilin: Mitochondr 65.4 3.5E+02 0.0076 33.7 30.0 62 260-324 379-440 (582)
335 PF02050 FliJ: Flagellar FliJ 65.2 1.2E+02 0.0027 28.4 16.8 32 884-915 57-88 (123)
336 COG3352 FlaC Putative archaeal 65.2 58 0.0013 34.2 10.2 66 808-873 43-108 (157)
337 KOG0972 Huntingtin interacting 64.6 2E+02 0.0043 33.4 14.9 80 848-927 270-355 (384)
338 PF14197 Cep57_CLD_2: Centroso 64.4 81 0.0018 28.9 10.0 53 198-250 7-59 (69)
339 KOG3501 Molecular chaperone Pr 64.2 1.6E+02 0.0034 29.4 14.0 98 825-922 5-110 (114)
340 PLN02939 transferase, transfer 64.2 4.1E+02 0.0088 35.7 19.7 118 808-925 155-289 (977)
341 PF14988 DUF4515: Domain of un 63.8 2.3E+02 0.005 31.1 22.2 97 144-248 6-102 (206)
342 PF15290 Syntaphilin: Golgi-lo 63.8 1.2E+02 0.0025 35.0 13.0 15 943-957 150-164 (305)
343 PF11180 DUF2968: Protein of u 63.4 1.7E+02 0.0036 32.1 13.6 42 884-925 145-186 (192)
344 PRK10698 phage shock protein P 63.2 2.4E+02 0.0053 31.2 22.8 27 215-241 118-144 (222)
345 TIGR02449 conserved hypothetic 63.1 58 0.0013 29.7 8.6 59 186-244 4-62 (65)
346 cd00176 SPEC Spectrin repeats, 63.0 1.8E+02 0.0039 29.6 16.5 35 167-201 75-109 (213)
347 KOG4677 Golgi integral membran 63.0 3.6E+02 0.0078 33.1 19.8 67 255-321 305-375 (554)
348 KOG2751 Beclin-like protein [S 62.7 1.3E+02 0.0028 36.5 13.7 92 811-904 145-236 (447)
349 PF15294 Leu_zip: Leucine zipp 62.7 2.9E+02 0.0063 31.9 21.6 22 377-398 256-277 (278)
350 PF12329 TMF_DNA_bd: TATA elem 62.5 99 0.0021 28.6 10.3 11 910-920 57-67 (74)
351 KOG0992 Uncharacterized conser 62.2 3.9E+02 0.0085 33.2 29.8 29 361-396 475-503 (613)
352 TIGR00998 8a0101 efflux pump m 62.1 1.8E+02 0.0038 33.1 14.7 52 817-868 81-132 (334)
353 PF05103 DivIVA: DivIVA protei 61.9 5.4 0.00012 39.4 2.2 45 814-858 23-67 (131)
354 PF06160 EzrA: Septation ring 61.9 4.1E+02 0.0089 33.3 38.1 54 361-414 380-433 (560)
355 PF02841 GBP_C: Guanylate-bind 61.9 2.4E+02 0.0052 32.3 15.6 120 130-251 178-297 (297)
356 PRK10093 primosomal replicatio 61.7 1.6E+02 0.0034 31.7 12.9 65 904-972 106-170 (171)
357 PF05278 PEARLI-4: Arabidopsis 60.9 1.9E+02 0.0041 33.2 14.1 8 497-504 61-68 (269)
358 PF08172 CASP_C: CASP C termin 60.8 1.3E+02 0.0028 33.9 13.0 32 827-858 3-34 (248)
359 KOG0240 Kinesin (SMY1 subfamil 60.5 4.4E+02 0.0096 33.3 20.1 166 809-974 421-601 (607)
360 PF10046 BLOC1_2: Biogenesis o 59.9 1.7E+02 0.0037 28.3 13.1 33 886-918 66-98 (99)
361 PRK02119 hypothetical protein; 59.8 58 0.0013 30.1 8.3 44 197-240 10-53 (73)
362 PRK10476 multidrug resistance 59.8 3.3E+02 0.0071 31.5 17.7 19 810-828 87-105 (346)
363 PRK02119 hypothetical protein; 59.6 52 0.0011 30.4 7.9 52 876-927 6-57 (73)
364 KOG4673 Transcription factor T 59.5 5E+02 0.011 33.5 49.5 138 123-306 355-493 (961)
365 PF04102 SlyX: SlyX; InterPro 59.4 53 0.0012 29.8 7.9 46 814-859 2-47 (69)
366 KOG4603 TBP-1 interacting prot 59.4 2.6E+02 0.0056 30.2 14.2 68 806-880 76-145 (201)
367 KOG0962 DNA repair protein RAD 59.1 6.6E+02 0.014 34.8 57.0 172 140-322 266-449 (1294)
368 PF05700 BCAS2: Breast carcino 59.0 2.8E+02 0.0061 30.5 17.5 34 178-211 132-165 (221)
369 PF10267 Tmemb_cc2: Predicted 58.9 2.6E+02 0.0055 33.8 15.5 26 812-837 215-240 (395)
370 KOG3809 Microtubule-binding pr 58.6 1.5E+02 0.0032 36.0 13.2 40 123-162 449-488 (583)
371 PF14712 Snapin_Pallidin: Snap 58.6 1.5E+02 0.0033 27.8 11.2 27 141-167 6-32 (92)
372 PRK02793 phi X174 lysis protei 58.3 61 0.0013 29.9 8.1 47 196-242 8-54 (72)
373 COG4487 Uncharacterized protei 58.2 4.3E+02 0.0093 32.4 20.6 152 820-974 39-206 (438)
374 KOG4687 Uncharacterized coiled 57.9 2.8E+02 0.006 31.9 14.5 64 196-259 9-72 (389)
375 PF15556 Zwint: ZW10 interacto 57.9 3E+02 0.0065 30.5 21.5 142 166-319 58-207 (252)
376 PF15294 Leu_zip: Leucine zipp 57.8 2.3E+02 0.0051 32.6 14.3 45 194-238 130-174 (278)
377 COG1730 GIM5 Predicted prefold 56.9 2.6E+02 0.0055 29.4 14.7 35 193-227 10-44 (145)
378 KOG2391 Vacuolar sorting prote 56.8 1.4E+02 0.003 35.2 12.4 105 863-970 223-328 (365)
379 PRK02793 phi X174 lysis protei 56.5 65 0.0014 29.7 8.0 51 877-927 6-56 (72)
380 KOG1962 B-cell receptor-associ 56.4 1.2E+02 0.0026 33.6 11.4 59 243-301 149-207 (216)
381 PF15456 Uds1: Up-regulated Du 56.1 1.1E+02 0.0023 31.2 10.2 86 886-972 22-108 (124)
382 COG3096 MukB Uncharacterized p 56.0 5.9E+02 0.013 33.3 25.8 60 254-313 1061-1120(1480)
383 PRK04406 hypothetical protein; 55.9 83 0.0018 29.3 8.7 35 231-265 11-45 (75)
384 TIGR03495 phage_LysB phage lys 55.9 2.4E+02 0.0053 29.2 12.8 44 265-308 60-103 (135)
385 PRK03598 putative efflux pump 55.3 3.5E+02 0.0076 31.0 15.7 8 731-738 20-27 (331)
386 PRK00736 hypothetical protein; 55.1 71 0.0015 29.1 7.9 40 202-241 11-50 (68)
387 KOG4302 Microtubule-associated 54.9 5.8E+02 0.013 32.9 24.0 138 167-304 46-198 (660)
388 PRK00736 hypothetical protein; 54.7 66 0.0014 29.3 7.7 49 879-927 5-53 (68)
389 PF07989 Microtub_assoc: Micro 54.6 1.1E+02 0.0023 28.6 9.2 71 839-915 2-72 (75)
390 PF10211 Ax_dynein_light: Axon 54.3 3.1E+02 0.0068 29.6 15.9 102 825-926 86-189 (189)
391 PRK00846 hypothetical protein; 54.1 80 0.0017 29.7 8.2 48 196-243 13-60 (77)
392 PF04899 MbeD_MobD: MbeD/MobD 54.1 1.6E+02 0.0034 27.3 10.0 54 169-222 15-68 (70)
393 PF10234 Cluap1: Clusterin-ass 54.0 4E+02 0.0086 30.7 20.2 14 139-152 128-141 (267)
394 PRK04325 hypothetical protein; 53.9 78 0.0017 29.3 8.1 39 202-240 15-53 (74)
395 PF14992 TMCO5: TMCO5 family 53.8 4.1E+02 0.0088 30.8 16.9 22 952-974 161-182 (280)
396 PF08581 Tup_N: Tup N-terminal 53.8 2E+02 0.0043 27.2 12.1 52 873-927 26-77 (79)
397 PLN03229 acetyl-coenzyme A car 53.7 6.3E+02 0.014 33.0 19.1 180 120-307 435-708 (762)
398 KOG4809 Rab6 GTPase-interactin 53.4 5.6E+02 0.012 32.3 27.2 190 185-398 327-516 (654)
399 COG4694 Uncharacterized protei 53.4 5.2E+02 0.011 32.7 16.8 65 863-928 437-501 (758)
400 PF09486 HrpB7: Bacterial type 53.4 3.1E+02 0.0066 29.2 18.6 106 139-252 26-142 (158)
401 PRK04325 hypothetical protein; 53.2 67 0.0014 29.8 7.6 47 812-858 5-51 (74)
402 TIGR02977 phageshock_pspA phag 53.2 3.4E+02 0.0074 29.7 24.2 16 221-236 124-139 (219)
403 KOG2008 BTK-associated SH3-dom 53.1 4.4E+02 0.0096 31.0 24.6 84 76-159 31-130 (426)
404 PF15358 TSKS: Testis-specific 53.1 1.7E+02 0.0037 35.2 12.4 59 866-924 154-212 (558)
405 PRK00295 hypothetical protein; 53.0 89 0.0019 28.5 8.2 38 236-273 10-47 (68)
406 PRK13729 conjugal transfer pil 53.0 50 0.0011 40.3 8.5 21 838-858 70-90 (475)
407 TIGR02971 heterocyst_DevB ABC 53.0 4E+02 0.0086 30.4 19.7 25 946-970 180-204 (327)
408 PF14739 DUF4472: Domain of un 52.6 2.6E+02 0.0055 28.1 13.4 91 195-288 9-99 (108)
409 KOG4657 Uncharacterized conser 52.5 3.9E+02 0.0084 30.1 18.3 120 163-285 25-144 (246)
410 smart00502 BBC B-Box C-termina 52.3 2.2E+02 0.0047 27.2 15.7 36 823-858 7-42 (127)
411 KOG4403 Cell surface glycoprot 52.3 5.2E+02 0.011 31.6 18.4 26 839-864 254-279 (575)
412 cd00890 Prefoldin Prefoldin is 51.7 2.4E+02 0.0053 27.5 12.6 37 889-925 90-126 (129)
413 PRK00846 hypothetical protein; 51.5 92 0.002 29.3 8.2 46 813-858 10-55 (77)
414 KOG3433 Protein involved in me 51.5 2.9E+02 0.0063 30.2 12.8 23 836-858 87-109 (203)
415 KOG4603 TBP-1 interacting prot 51.2 3.5E+02 0.0076 29.3 14.6 70 197-271 80-149 (201)
416 KOG4677 Golgi integral membran 51.1 5.6E+02 0.012 31.6 18.2 9 467-475 31-39 (554)
417 KOG2264 Exostosin EXT1L [Signa 50.6 99 0.0022 38.5 10.3 36 821-856 91-126 (907)
418 KOG0998 Synaptic vesicle prote 50.5 1.8E+02 0.0038 38.4 13.5 79 845-923 485-563 (847)
419 cd00176 SPEC Spectrin repeats, 50.3 2.9E+02 0.0063 28.1 17.7 39 123-161 74-112 (213)
420 KOG4552 Vitamin-D-receptor int 50.3 4E+02 0.0086 29.6 18.6 12 972-983 146-157 (272)
421 PRK00295 hypothetical protein; 49.4 1.1E+02 0.0023 28.0 8.1 34 264-297 10-43 (68)
422 TIGR01010 BexC_CtrB_KpsE polys 49.4 4.9E+02 0.011 30.4 19.4 27 138-164 173-199 (362)
423 cd00890 Prefoldin Prefoldin is 49.1 2.7E+02 0.0058 27.3 12.0 31 887-917 95-125 (129)
424 PF14073 Cep57_CLD: Centrosome 48.8 3.9E+02 0.0084 29.1 20.3 101 186-293 54-154 (178)
425 PF12761 End3: Actin cytoskele 48.8 78 0.0017 34.6 8.4 30 364-393 164-193 (195)
426 KOG3215 Uncharacterized conser 48.5 4.2E+02 0.0092 29.4 17.3 98 94-210 27-124 (222)
427 PF08826 DMPK_coil: DMPK coile 48.4 2.1E+02 0.0045 25.9 10.0 41 224-264 18-58 (61)
428 TIGR02449 conserved hypothetic 48.3 1.3E+02 0.0029 27.5 8.4 34 234-267 10-43 (65)
429 PF15035 Rootletin: Ciliary ro 48.3 3.9E+02 0.0084 28.9 19.3 88 232-325 82-180 (182)
430 PF15397 DUF4618: Domain of un 48.1 4.8E+02 0.01 29.9 29.2 141 124-271 9-150 (258)
431 PF07798 DUF1640: Protein of u 48.1 3.7E+02 0.0079 28.6 20.1 18 115-132 15-34 (177)
432 PF05529 Bap31: B-cell recepto 47.8 1.5E+02 0.0034 31.5 10.5 29 828-856 116-144 (192)
433 TIGR03752 conj_TIGR03752 integ 47.5 1.8E+02 0.0039 35.8 11.9 27 832-858 61-87 (472)
434 KOG1760 Molecular chaperone Pr 47.3 2.7E+02 0.0058 28.7 11.1 35 890-924 85-119 (131)
435 PF10805 DUF2730: Protein of u 46.9 1.5E+02 0.0033 29.1 9.4 54 805-858 31-86 (106)
436 PF08657 DASH_Spc34: DASH comp 46.6 81 0.0018 35.8 8.5 82 890-971 177-258 (259)
437 PF04899 MbeD_MobD: MbeD/MobD 46.5 2.4E+02 0.0053 26.1 9.9 39 864-902 20-58 (70)
438 PF08580 KAR9: Yeast cortical 46.5 7.8E+02 0.017 31.9 34.0 97 810-908 200-298 (683)
439 PF14817 HAUS5: HAUS augmin-li 46.4 3.4E+02 0.0073 34.8 14.5 87 221-307 83-169 (632)
440 KOG3850 Predicted membrane pro 46.4 3.4E+02 0.0073 32.7 13.4 18 952-969 353-370 (455)
441 PF13805 Pil1: Eisosome compon 46.1 5.2E+02 0.011 29.8 18.2 21 952-972 208-228 (271)
442 PF12761 End3: Actin cytoskele 45.6 2.9E+02 0.0062 30.4 12.0 24 811-834 98-121 (195)
443 PRK00409 recombination and DNA 45.4 6.5E+02 0.014 33.0 17.3 20 661-680 389-408 (782)
444 KOG1103 Predicted coiled-coil 44.9 6.1E+02 0.013 30.2 20.8 54 248-301 241-294 (561)
445 KOG2629 Peroxisomal membrane a 44.9 1.6E+02 0.0035 34.0 10.4 64 238-311 136-201 (300)
446 COG2900 SlyX Uncharacterized p 44.5 1.4E+02 0.003 27.9 8.0 50 195-244 7-56 (72)
447 COG0497 RecN ATPase involved i 44.5 7.7E+02 0.017 31.3 20.4 40 110-149 160-199 (557)
448 TIGR00293 prefoldin, archaeal 44.4 3.3E+02 0.0071 27.0 12.3 17 834-850 17-33 (126)
449 PF05483 SCP-1: Synaptonemal c 44.2 8.4E+02 0.018 31.6 59.1 66 863-928 585-650 (786)
450 TIGR01069 mutS2 MutS2 family p 43.8 5.9E+02 0.013 33.4 16.6 9 1071-1079 693-701 (771)
451 cd00584 Prefoldin_alpha Prefol 43.7 3.4E+02 0.0074 26.9 12.9 30 894-923 95-124 (129)
452 TIGR02894 DNA_bind_RsfA transc 43.5 3.7E+02 0.0079 28.8 12.0 50 879-928 104-153 (161)
453 PF06810 Phage_GP20: Phage min 43.4 1.5E+02 0.0032 31.2 9.2 23 961-983 118-140 (155)
454 PF07989 Microtub_assoc: Micro 43.3 2.4E+02 0.0053 26.3 9.6 36 238-273 36-71 (75)
455 KOG2264 Exostosin EXT1L [Signa 43.3 1.7E+02 0.0036 36.7 10.7 14 496-509 255-268 (907)
456 PRK10361 DNA recombination pro 43.1 7.5E+02 0.016 30.8 25.6 15 309-323 203-217 (475)
457 COG3352 FlaC Putative archaeal 42.7 2.3E+02 0.0049 30.1 10.2 67 848-928 69-136 (157)
458 TIGR02894 DNA_bind_RsfA transc 42.6 4.5E+02 0.0099 28.1 12.8 43 243-285 102-144 (161)
459 PRK15178 Vi polysaccharide exp 42.5 7.3E+02 0.016 30.5 18.2 62 830-891 242-305 (434)
460 PF06120 Phage_HK97_TLTM: Tail 42.5 6.2E+02 0.013 29.6 19.2 119 809-927 41-168 (301)
461 COG4717 Uncharacterized conser 42.3 9.8E+02 0.021 31.9 26.2 181 123-304 629-849 (984)
462 TIGR01069 mutS2 MutS2 family p 42.0 6E+02 0.013 33.3 16.2 10 113-122 412-421 (771)
463 PF05377 FlaC_arch: Flagella a 42.0 74 0.0016 28.2 5.6 40 880-919 1-40 (55)
464 KOG1265 Phospholipase C [Lipid 41.4 3.5E+02 0.0077 35.8 13.4 105 107-218 1070-1179(1189)
465 PF08657 DASH_Spc34: DASH comp 41.3 1.1E+02 0.0023 34.8 8.4 25 896-920 235-259 (259)
466 PF06632 XRCC4: DNA double-str 41.2 6.7E+02 0.015 29.8 15.1 64 831-900 145-208 (342)
467 PF10304 DUF2411: Domain of un 41.2 27 0.0006 28.1 2.7 22 95-116 15-36 (36)
468 PF07851 TMPIT: TMPIT-like pro 41.0 2.4E+02 0.0051 33.4 11.3 13 911-923 79-91 (330)
469 PF05103 DivIVA: DivIVA protei 41.0 17 0.00036 35.9 1.9 81 121-208 39-119 (131)
470 PRK15178 Vi polysaccharide exp 41.0 4.5E+02 0.0098 32.2 13.9 71 885-972 313-392 (434)
471 PF11172 DUF2959: Protein of u 40.9 5.4E+02 0.012 28.5 18.2 112 863-974 62-192 (201)
472 PF02403 Seryl_tRNA_N: Seryl-t 40.6 2.1E+02 0.0045 27.6 9.3 13 282-294 83-95 (108)
473 TIGR03545 conserved hypothetic 40.2 2.6E+02 0.0055 35.2 12.1 58 787-851 148-205 (555)
474 KOG0993 Rab5 GTPase effector R 40.1 7.8E+02 0.017 30.1 20.2 40 126-165 322-361 (542)
475 PF04949 Transcrip_act: Transc 40.1 4.8E+02 0.01 27.7 17.0 32 135-166 45-76 (159)
476 PF12777 MT: Microtubule-bindi 40.0 6.8E+02 0.015 29.3 23.6 78 224-301 221-298 (344)
477 PF12240 Angiomotin_C: Angiomo 39.8 5.7E+02 0.012 28.4 13.5 40 942-985 126-165 (205)
478 TIGR02971 heterocyst_DevB ABC 39.8 6.2E+02 0.013 28.8 16.0 33 944-980 185-217 (327)
479 KOG2196 Nuclear porin [Nuclear 39.6 6.2E+02 0.014 28.8 17.3 53 159-212 84-136 (254)
480 KOG4637 Adaptor for phosphoino 39.5 7.6E+02 0.017 29.8 16.6 10 5-14 24-33 (464)
481 TIGR03752 conj_TIGR03752 integ 39.3 2.1E+02 0.0046 35.2 10.8 77 121-208 66-142 (472)
482 PF05377 FlaC_arch: Flagella a 39.1 95 0.0021 27.6 5.9 52 831-882 1-52 (55)
483 KOG2010 Double stranded RNA bi 39.1 2.2E+02 0.0049 33.4 10.4 90 836-925 110-200 (405)
484 KOG4460 Nuclear pore complex, 38.8 9.2E+02 0.02 30.6 20.8 154 815-973 573-737 (741)
485 PF08702 Fib_alpha: Fibrinogen 38.7 4.8E+02 0.01 27.2 16.3 102 814-924 27-128 (146)
486 PF11180 DUF2968: Protein of u 38.4 5.8E+02 0.013 28.1 15.1 94 810-903 92-185 (192)
487 PRK10476 multidrug resistance 38.4 6.8E+02 0.015 28.9 17.9 124 186-309 83-217 (346)
488 PF05615 THOC7: Tho complex su 38.2 4.4E+02 0.0096 26.7 12.3 75 192-266 42-116 (139)
489 KOG3433 Protein involved in me 38.0 5.8E+02 0.013 28.0 13.0 92 837-928 74-165 (203)
490 TIGR03495 phage_LysB phage lys 37.7 4.9E+02 0.011 27.1 12.1 80 201-280 17-96 (135)
491 PHA03011 hypothetical protein; 37.7 1.7E+02 0.0037 29.0 7.9 60 864-923 56-115 (120)
492 KOG0244 Kinesin-like protein [ 37.6 2.6E+02 0.0056 37.0 11.7 125 189-323 467-591 (913)
493 KOG3478 Prefoldin subunit 6, K 37.6 4.5E+02 0.0098 26.6 14.5 97 201-297 3-114 (120)
494 PF04871 Uso1_p115_C: Uso1 / p 37.6 4.8E+02 0.01 26.9 14.1 97 831-927 2-104 (136)
495 COG4985 ABC-type phosphate tra 37.6 3.4E+02 0.0074 30.7 11.1 85 820-904 161-246 (289)
496 PRK10698 phage shock protein P 37.3 6.1E+02 0.013 28.1 24.2 184 117-301 20-215 (222)
497 PF15369 KIAA1328: Uncharacter 37.3 4.7E+02 0.01 30.9 12.7 81 214-297 5-85 (328)
498 TIGR01837 PHA_granule_1 poly(h 37.1 2.1E+02 0.0046 28.7 8.9 62 156-217 48-117 (118)
499 TIGR00998 8a0101 efflux pump m 37.1 6.7E+02 0.015 28.5 18.1 118 186-305 77-204 (334)
500 PF04642 DUF601: Protein of un 37.0 2.8E+02 0.0061 31.6 10.4 117 148-282 185-301 (311)
No 1
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=100.00 E-value=1.2e-149 Score=1341.74 Aligned_cols=766 Identities=51% Similarity=0.679 Sum_probs=658.3
Q ss_pred hhHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhHHHHhhhhhhHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Q 001374 98 KEDLVKQHTKVAEEAVSGWEKAEAEALALKNHLESVTLSKLTAEDRAAHLDGALKECMRQIRNLKEEHEQKLQDFVLTKT 177 (1091)
Q Consensus 98 kd~lvkqh~kvaeeav~gwekae~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLKec~~qLr~~reeqeqki~~~~~~~~ 177 (1091)
||+|||||+|||||||+||||||+||++||+|||+++++++++||||+|||||||+||||||++|||||||||++|++++
T Consensus 1 k~~lvkqh~kvaeeav~gwekae~e~~~lk~~l~~~~~~~~~~e~r~~hld~aLkec~~qlr~~ree~eq~i~~~~~~~s 80 (769)
T PF05911_consen 1 KDDLVKQHAKVAEEAVSGWEKAEAEAASLKQQLEAATQQKLALEDRVSHLDGALKECMRQLRQVREEQEQKIHEAVAKKS 80 (769)
T ss_pred CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 001374 178 KQWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIV 257 (1091)
Q Consensus 178 ~e~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIenlEKEne~LK~EL~~L 257 (1091)
+||++++.+|+.+|.++.++|.++.+++..+...|+.+.+.|.+|.+.+.++++++..++.|++++++++..|+|+++++
T Consensus 81 ~e~e~~~~~le~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~ 160 (769)
T PF05911_consen 81 KEWEKIKSELEAKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVL 160 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHhhhcCCcCCccccCCCC
Q 001374 258 SKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLVRKKLPGPAALAQMKMEVESLGRDYGDSRLKRSPV 337 (1091)
Q Consensus 258 qeELEiL~EElE~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l~rk~lpgpaa~a~mk~ev~~l~~~~~~~r~rr~~~ 337 (1091)
+++|++|++|+++..++++++++||++.++||++||+||+|||+||||||||||||||||+|||+|||+++++||||+|+
T Consensus 161 ~keleir~~E~~~~~~~ae~a~kqhle~vkkiakLEaEC~rLr~l~rk~lpgpaa~a~mk~ev~~~~~~~~~~r~r~~~~ 240 (769)
T PF05911_consen 161 SKELEIRNEEREYSRRAAEAASKQHLESVKKIAKLEAECQRLRALVRKKLPGPAALAQMKNEVESLGRDSGENRRRRSPS 240 (769)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHhHHHHHHhccccccccCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCcccchhhhHhhhhhhHHHHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHhhhccc
Q 001374 338 KPTSPHLSPVSEFSLDNVQKFQKENEFLTERLLAMEEETKMLKEALAKRNSELQASRNLCAKTASKLQSLEAQMQTSTQQ 417 (1091)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~rl~~~eee~k~lke~l~~k~~elq~sr~~~a~t~~kl~~~e~q~~~~~~~ 417 (1091)
++++++. ++.++.+.++++++|||+||++||||||||||+|++||+||||||+|||+|||||++||+||.
T Consensus 241 ~~~~~~~-----~~~~~~~~~~~~~~~l~~~l~~~eeEnk~Lke~l~~k~~ELq~sr~~~a~ta~kL~~~e~ql~----- 310 (769)
T PF05911_consen 241 RPSSPHD-----FSPQNPQKRSKESEFLTERLQAMEEENKMLKEALAKKNSELQFSRNMYAKTASKLSQLEAQLK----- 310 (769)
T ss_pred ccccccc-----ccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 8877653 566788899999999999999999999999999999999999999999999999999999993
Q ss_pred CCCCchhhhhhhccccCCCCCCCCCCCCCCCCCCCCCCcCcchhhHhhhhhhhhhhhhccccccC-CCCCCccccccchH
Q 001374 418 KSPTKSVVQIAAEGYTSQNASNPPSLTSMSEDDNDDKVSCADSWATALISELSQIKKEKNVEKSN-KAETPKHLELMDDF 496 (1091)
Q Consensus 418 ~~~~~~~~~~~~~~~~s~~~s~~~s~~s~s~~~~dd~~s~s~swasalisel~~fk~~k~~~~~~-~~~~~~~~~lMDDF 496 (1091)
++.++++++++++|++||||++|||++|+||++||+|||||||||||||||++|.+++++ .++.++||+|||||
T Consensus 311 -----~~~~~~~e~~~s~~~~~~~s~~s~se~~~dd~~s~s~SWAsaLiseldqfk~~k~~~~~~~~~~~~~~i~LMDDF 385 (769)
T PF05911_consen 311 -----SSGQVSMELSSSQNTSNPPSLTSMSEDGNDDEGSCSDSWASALISELDQFKNEKVISRSSSKTISSSDIDLMDDF 385 (769)
T ss_pred -----HhhccccccccccCCCCCCchhcccccCCCCCCcccchhHHHHhchHHHhccccccccccccCCccccHHHHHHH
Confidence 336788999999999999999999999999999999999999999999999999855555 44567799999999
Q ss_pred HHhHhhhccccCCCCCCccccCCCCCCCCCcccccCCCcccccccchhhhhhccCCCcccccccccCCCCCCCCcccCch
Q 001374 497 LEMEKLACLSNDTNSNGTITASNGPNNKTSDIVNHDASGAVTSGEDLLSEQQRDMNPSVDKLSSNTQSSTVNPEADAGQP 576 (1091)
Q Consensus 497 lEmEkLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 576 (1091)
||||||||+|.++++.++++.+..... ....+.. +.+.+... .. ..-.+.
T Consensus 386 lEmEkLA~~s~~~~~~~~~~~~~~~~~------~~~~~~~-~~~~~~~~---------------------~~--~~~~~~ 435 (769)
T PF05911_consen 386 LEMEKLAALSRDSSSPSSCSSSEVDSD------SSVTLES-SSKRESVL---------------------ES--DKLSDR 435 (769)
T ss_pred HHHHHHHhcCCCCCCCCCCCCcccccc------ccccccc-cccccccc---------------------cc--hhhccc
Confidence 999999999998887777642111110 1111111 01111111 00 001255
Q ss_pred hhhHHHHHHHHHHHhh-ccccchhHHHHHHHHHHhhhhhhhhccccccccccccCCcccccccCCCCCCCccchhhhhhh
Q 001374 577 QLMKLRSRISMLLETI-SKDADMGKIVEDIKRVVEDEHVTLHQHSANCISDEVKCSDVSCSAEAYPGDASLNTERKIDLT 655 (1091)
Q Consensus 577 ~~~~l~~~~~~~~e~~-~~~~~~~~il~~ik~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 655 (1091)
.|+|||++++.|+++. +++++ .||+||+++|.++++.. ... +. .+..+.....+..-..+
T Consensus 436 ~~~wLqsv~k~v~~q~~~s~i~--~ILedI~~al~~~~~~~-------~~~-----~~-----~~~~~~~~~sL~e~~~s 496 (769)
T PF05911_consen 436 IPEWLQSVLKLVLEQKEVSKIS--EILEDIEIALDSINNSS-------NCD-----DD-----SEEYESMEASLVEESKS 496 (769)
T ss_pred ccHHHHHHHHHHHHHHHhhhHH--HHHHHHHHHHHhhcccc-------ccc-----cc-----cchhhhhhhhHHHHHHH
Confidence 7999999999999998 88877 99999999999997611 110 00 00001111111112344
Q ss_pred HHHHhHHHHHHHHHHHHHHHhhhhhhhhhcCCCCchhhHHHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHhhhhhhh
Q 001374 656 VQVISQELVAAITQIHDFVLFLGKEARAVHDTTNENGFSQKIEEFYVSFNKVIDSNTYLVDFVFALSNVLAKASELRINV 735 (1091)
Q Consensus 656 ~~~~~~~l~~~~~~i~~~v~~~~~e~~~~~~~~~~~~l~~~l~~f~~~~~~~l~~~~~~~~f~~~l~~~l~~~~~~~~~~ 735 (1091)
...++.+|..++.+|+||+..+ ++|.|+|+++|+|+++|.+|+.+++.+|+|+.++||++
T Consensus 497 ~~~~s~eL~~avskIsEfv~~L--------------------ekeVh~C~DLLsgkadLE~fieE~s~tLdwIls~~~SL 556 (769)
T PF05911_consen 497 MIEISQELNVAVSKISEFVLVL--------------------EKEVHVCQDLLSGKADLERFIEEFSLTLDWILSNCFSL 556 (769)
T ss_pred HHhhcccHHHHHHhHHHHHHHH--------------------HHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHccchH
Confidence 5568899999999998876655 67888899999999999999999999999999999988
Q ss_pred cCCCCCccCCCCccccccccccchhhcccCCCCCCCCCCccCCCCCCCCCCCCCCccccccccchhhhhccCHHHHHHHH
Q 001374 736 MGYKDTEIEPNSPDCIDKVALPENKVIKKDTSGERYPNGCAHISNPTSDPEVPDDGSIVAAYESETTACKFSLEEFEELK 815 (1091)
Q Consensus 736 ~~~~~~e~e~~~~~~~dk~~~~e~k~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~EelEqLE 815 (1091)
.+.. +..|. +...+ .+|. +..-++... -......+..+.++++.++
T Consensus 557 qDv~---------s~~sE---IK~~f-----------~~~s-----s~e~E~~~~------dea~~~~~~el~eelE~le 602 (769)
T PF05911_consen 557 QDVS---------SMRSE---IKKNF-----------DGDS-----SSEAEINSE------DEADTSEKKELEEELEKLE 602 (769)
T ss_pred HHHH---------HHHHH---HHHhh-----------hhcc-----cccccccch------HHHHHHHHHHHHHHHHHHH
Confidence 8711 11111 11111 0010 001110000 0233445567889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 001374 816 LEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVNLLRAKI 895 (1091)
Q Consensus 816 sEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selEeqLk~~~e~ledLesrL~eLeaElkeLqeKV 895 (1091)
.++.++++.|..|+++++.++.+|+++++.|.+|+.+|..++++++.++++++++.+.|+.+++++..+++++++++.||
T Consensus 603 ~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~~~l~~Ki 682 (769)
T PF05911_consen 603 SEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAEAEELQSKI 682 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhh-hcccchhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 001374 896 ESLENELQDEKMSHHNAMAKCKELEEQLQRNENC-AVCSSEADENKIKQDRDLAAAAERLAECQETILLLGKQLKSLRPQ 974 (1091)
Q Consensus 896 esLE~ELe~ek~~~eEleaK~~eLEeQLe~~~~~-~lk~q~dkdLKikqEkEIaaAeeKLAEcQeTI~sLEKQLKsLa~q 974 (1091)
..|+.||++++..+.++.++|.+|+++|+++... ......+.+++++++|+|++|++||||||+||.+||+|||+|+++
T Consensus 683 ~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~~~~~~~~~~~~~~k~kqe~EiaaAA~KLAECQeTI~sLGkQLksLa~~ 762 (769)
T PF05911_consen 683 SSLEEELEKERALSEELEAKCRELEEELERMKKEESLQQLANEDKKIKQEKEIAAAAEKLAECQETIASLGKQLKSLATP 762 (769)
T ss_pred HHHHHHHHHHHhcchhhhhHHHHHHHHHHhhhcccchhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence 9999999999999999999999999999999872 222333778899999999999999999999999999999999999
Q ss_pred CcccCCC
Q 001374 975 SEVIGSP 981 (1091)
Q Consensus 975 ~e~~~~~ 981 (1091)
+||++++
T Consensus 763 ~d~~~ds 769 (769)
T PF05911_consen 763 EDFLLDS 769 (769)
T ss_pred hhhhccC
Confidence 9999874
No 2
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=99.51 E-value=4.3e-09 Score=129.53 Aligned_cols=38 Identities=32% Similarity=0.344 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHHhhccccchhHHHHHHHHHHhhhhhhh
Q 001374 579 MKLRSRISMLLETISKDADMGKIVEDIKRVVEDEHVTL 616 (1091)
Q Consensus 579 ~~l~~~~~~~~e~~~~~~~~~~il~~ik~~l~~~~~~~ 616 (1091)
+.+++++..+|....+....++++.+|+.+|++|...+
T Consensus 430 ~~~~~~~~~wLqsv~k~v~~q~~~s~i~~ILedI~~al 467 (769)
T PF05911_consen 430 DKLSDRIPEWLQSVLKLVLEQKEVSKISEILEDIEIAL 467 (769)
T ss_pred hhhcccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 57999999999999999999999999999999997644
No 3
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.48 E-value=1.1e-06 Score=112.99 Aligned_cols=51 Identities=18% Similarity=0.118 Sum_probs=26.7
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHH
Q 001374 361 ENEFLTERLLAMEEETKMLKEALAKRNSELQASRNLCAKTASKLQSLEAQM 411 (1091)
Q Consensus 361 ~~~~l~~rl~~~eee~k~lke~l~~k~~elq~sr~~~a~t~~kl~~~e~q~ 411 (1091)
++.-+..++..++.+.+.+...+.....+|+..+..+...-.++..++...
T Consensus 449 ~l~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~l~~l~~~~~~l~~~~ 499 (1164)
T TIGR02169 449 EIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQA 499 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555555555555555555555555555555555555544
No 4
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.34 E-value=2.3e-06 Score=110.22 Aligned_cols=108 Identities=20% Similarity=0.258 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001374 193 NFEQELLRSAAENATLSRSLQERSNMLIKIS-EEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMS 271 (1091)
Q Consensus 193 ElEkeLeelkaEl~aLeeqLEelqeeI~EL~-eeiErlEgEi~LLkERIenlEKEne~LK~EL~~LqeELEiL~EElE~s 271 (1091)
.+..++..+..++..+...+..++..+..+. .++.+++.++..+..++..++..+..++.++..+..++..+..++..+
T Consensus 255 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l 334 (1164)
T TIGR02169 255 KLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKL 334 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444433 344446677777777777777777777777777666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001374 272 MRSAEAANKQHMEGVKKIAKLEAECQRLR 300 (1091)
Q Consensus 272 ~qsaeal~KQ~lEl~KKLaKLEaEcqrLr 300 (1091)
...++.+..++.+....+..++.++..+.
T Consensus 335 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 363 (1164)
T TIGR02169 335 LAEIEELEREIEEERKRRDKLTEEYAELK 363 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666655555554444
No 5
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.27 E-value=5.6e-06 Score=103.61 Aligned_cols=129 Identities=16% Similarity=0.210 Sum_probs=110.6
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHH
Q 001374 805 KFSLEEFEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQEL 884 (1091)
Q Consensus 805 ~~s~EelEqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selEeqLk~~~e~ledLesrL~eL 884 (1091)
-++.+.++.++..+..+...+..++.++..+..++.++...+++|+.+++.+.++...+-..+..+..++.+++..+...
T Consensus 774 ~~s~~~v~~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~k~ 853 (1293)
T KOG0996|consen 774 GVSKESVEKLERALSKMSDKARQHQEQLHELEERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAAVLKK 853 (1293)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 46889999999999999999999999999999999999999999999999999988888888888888888888775544
Q ss_pred H---HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhcccc
Q 001374 885 E---AEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNENCAVCSS 934 (1091)
Q Consensus 885 e---aElkeLqeKVesLE~ELe~ek~~~eEleaK~~eLEeQLe~~~~~~lk~q 934 (1091)
. ..++.+++.|+.++.|++........ .+++..|+.+|+.+++...+.+
T Consensus 854 ~~d~~~l~~~~~~ie~l~kE~e~~qe~~~K-k~~i~~lq~~i~~i~~e~~q~q 905 (1293)
T KOG0996|consen 854 VVDKKRLKELEEQIEELKKEVEELQEKAAK-KARIKELQNKIDEIGGEKVQAQ 905 (1293)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHhhchhhHHh
Confidence 3 56677888899999999999855555 7999999999999998444433
No 6
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.20 E-value=9.1e-05 Score=95.35 Aligned_cols=105 Identities=21% Similarity=0.270 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 820 NLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVNLLRAKIESLE 899 (1091)
Q Consensus 820 elE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selEeqLk~~~e~ledLesrL~eLeaElkeLqeKVesLE 899 (1091)
.+...+..++.++..+...+..+...+..++.++..+...+..++.++..+...+..+...+..++.++..+..++..++
T Consensus 800 ~~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 879 (1179)
T TIGR02168 800 ALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALL 879 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333333333333333333333444444444444444444
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHH
Q 001374 900 NELQDEKMSHHNAMAKCKELEEQLQ 924 (1091)
Q Consensus 900 ~ELe~ek~~~eEleaK~~eLEeQLe 924 (1091)
.++......+.++..++.+++.++.
T Consensus 880 ~~~~~l~~~~~~~~~~~~~~~~~~~ 904 (1179)
T TIGR02168 880 NERASLEEALALLRSELEELSEELR 904 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444
No 7
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.13 E-value=9.6e-05 Score=98.61 Aligned_cols=89 Identities=18% Similarity=0.200 Sum_probs=67.7
Q ss_pred hhcchHHHHHHHHHHHHHHHHHHHHhhhhcchhhHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhHHHHhhhhhhHHHHHh
Q 001374 66 QVKTNEEQVQTMEEQIKELNEKLSAANSEISAKEDLVKQHTKVAEEAVSGWEKAEAEALALKNHLESVTLSKLTAEDRAA 145 (1091)
Q Consensus 66 ~v~~~~~~~~~~~~~~k~l~ekls~a~~~~~~kd~lvkqh~kvaeeav~gwekae~e~~~lK~~Le~~~~q~~~le~rv~ 145 (1091)
.+.....++.+|..+++....-|+.....+.....+|.|+.|...+..++-...+.+....+..+..+..+++.|..-+.
T Consensus 1056 ~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele 1135 (1930)
T KOG0161|consen 1056 SIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELE 1135 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566778888888888889999999999999999999999998888888877777777777777777666666555
Q ss_pred hhhHHHHHH
Q 001374 146 HLDGALKEC 154 (1091)
Q Consensus 146 hLd~aLKec 154 (1091)
.|-.=|.+-
T Consensus 1136 ~l~~~Lee~ 1144 (1930)
T KOG0161|consen 1136 ELKEELEEQ 1144 (1930)
T ss_pred HHHHHHHHH
Confidence 554444443
No 8
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.06 E-value=0.00041 Score=91.01 Aligned_cols=46 Identities=26% Similarity=0.305 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHHhHHHHhhhhhhHHHHHhhhhHHHHHHHHHHHhh
Q 001374 116 WEKAEAEALALKNHLESVTLSKLTAEDRAAHLDGALKECMRQIRNL 161 (1091)
Q Consensus 116 wekae~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLKec~~qLr~~ 161 (1091)
|+.++.++..++.++++...+....+.++..+...+.+--.++..+
T Consensus 241 l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~ 286 (1163)
T COG1196 241 LEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEEL 286 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666666666666666665555555555
No 9
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.97 E-value=0.001 Score=89.35 Aligned_cols=108 Identities=18% Similarity=0.191 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001374 196 QELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSA 275 (1091)
Q Consensus 196 keLeelkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIenlEKEne~LK~EL~~LqeELEiL~EElE~s~qsa 275 (1091)
+...++...+..+...++.-+....++...+-++++++..+++.+..+......|..++.....++..+..+++.....+
T Consensus 1013 k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~ 1092 (1930)
T KOG0161|consen 1013 KAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEV 1092 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 33344444455555555555666666777777888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001374 276 EAANKQHMEGVKKIAKLEAECQRLRGLV 303 (1091)
Q Consensus 276 eal~KQ~lEl~KKLaKLEaEcqrLr~l~ 303 (1091)
..+.+++.++...|..+++++...++-.
T Consensus 1093 ~~l~k~i~eL~~~i~el~e~le~er~~r 1120 (1930)
T KOG0161|consen 1093 AQLQKQIKELEARIKELEEELEAERASR 1120 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888889999888888888887777654
No 10
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.95 E-value=0.0011 Score=88.03 Aligned_cols=171 Identities=14% Similarity=0.144 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHhhhhcchhhHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhHHHHhhhhhhHHHHHhhhhHHHHH---H
Q 001374 78 EEQIKELNEKLSAANSEISAKEDLVKQHTKVAEEAVSGWEKAEAEALALKNHLESVTLSKLTAEDRAAHLDGALKE---C 154 (1091)
Q Consensus 78 ~~~~k~l~ekls~a~~~~~~kd~lvkqh~kvaeeav~gwekae~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLKe---c 154 (1091)
.+.++.+......-+-.+...-..++.+-.-|.+.=..-++++.++.+++.++.+...+...++.++.++...+.+ -
T Consensus 188 ~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ir~~l~~~q~kie~~~~~~~~le~ei~~l~~~~~~l~~~~~~~~~l 267 (1311)
T TIGR00606 188 LETLRQVRQTQGQKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKL 267 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444555556666666666666666666666655555544322 2
Q ss_pred HHHHHhhhHHH------HHHHHH----HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 155 MRQIRNLKEEH------EQKLQD----FVLTKTKQWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISE 224 (1091)
Q Consensus 155 ~~qLr~~reeq------eqki~~----~~~~~~~e~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLEelqeeI~EL~e 224 (1091)
..++..++... -+++.. .+...-.+|+.+...+...+.+++.++..+..++..+...+..++.....+..
T Consensus 268 ~~ql~~l~~~~~~~~~~~~rL~~~i~~~l~~s~eEL~~ll~~f~~~~~e~~~~~~~le~e~~~l~~el~~l~~~~~~l~~ 347 (1311)
T TIGR00606 268 DNEIKALKSRKKQMEKDNSELELKMEKVFQGTDEQLNDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELLV 347 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333332211 122222 12223356777777777777777777777777777777777777777777766
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHH
Q 001374 225 EKSQAEAEIELLKGNIEQCEREIN 248 (1091)
Q Consensus 225 eiErlEgEi~LLkERIenlEKEne 248 (1091)
.+.+++++......++.....-+.
T Consensus 348 e~gkl~~~~~~~~~~~~~~~~~~~ 371 (1311)
T TIGR00606 348 EQGRLQLQADRHQEHIRARDSLIQ 371 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666555555554444443
No 11
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.93 E-value=0.0011 Score=87.05 Aligned_cols=59 Identities=25% Similarity=0.313 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHhhhhcchhhHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhHHHHhhh
Q 001374 78 EEQIKELNEKLSAANSEISAKEDLVKQHTKVAEEAVSGWEKAEAEALALKNHLESVTLS 136 (1091)
Q Consensus 78 ~~~~k~l~ekls~a~~~~~~kd~lvkqh~kvaeeav~gwekae~e~~~lK~~Le~~~~q 136 (1091)
-..++.++.+|..+-.++......+.++..--.++-..++..+.+...++..+..++..
T Consensus 231 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~ 289 (1163)
T COG1196 231 LAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEE 289 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666677777777766666667777777777777777777777666666666433
No 12
>PRK02224 chromosome segregation protein; Provisional
Probab=98.77 E-value=0.0026 Score=80.99 Aligned_cols=46 Identities=28% Similarity=0.402 Sum_probs=20.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHH
Q 001374 365 LTERLLAMEEETKMLKEALAKRNSELQASRNLCAKTASKLQSLEAQ 410 (1091)
Q Consensus 365 l~~rl~~~eee~k~lke~l~~k~~elq~sr~~~a~t~~kl~~~e~q 410 (1091)
+.+.+..++.+.+.|.+-++....++...+......-..|..++.+
T Consensus 347 ~~~~~~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~e 392 (880)
T PRK02224 347 LREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEE 392 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555444444444443333333333333333333
No 13
>PRK02224 chromosome segregation protein; Provisional
Probab=98.74 E-value=0.0032 Score=80.21 Aligned_cols=112 Identities=14% Similarity=0.206 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHH-----HHHHHHHHHHH
Q 001374 814 LKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSL-----ETHAQELEAEV 888 (1091)
Q Consensus 814 LEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selEeqLk~~~e~ledL-----esrL~eLeaEl 888 (1091)
++.++.+++.++..+. .+..+...+.+++..+.+++..+..++.....+.+++..+..++..+ ..++..+..++
T Consensus 577 ~~~~~~~l~~~~~~le-~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~r~~i~~l~~~~~~~~~e~l~~~~ 655 (880)
T PRK02224 577 LNSKLAELKERIESLE-RIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDEARIEEAREDK 655 (880)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 3333333333333333 23333333334444444444444333333333333444333333333 22344444555
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh
Q 001374 889 NLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRN 926 (1091)
Q Consensus 889 keLqeKVesLE~ELe~ek~~~eEleaK~~eLEeQLe~~ 926 (1091)
..+...+..++..+...+..+..+..++..++.+++.+
T Consensus 656 ~~~~~~~~~l~~~l~~~~~~~~~l~~~i~~~~~~~e~~ 693 (880)
T PRK02224 656 ERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEEL 693 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555544
No 14
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.61 E-value=0.0054 Score=76.64 Aligned_cols=93 Identities=24% Similarity=0.310 Sum_probs=44.2
Q ss_pred hhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHH-----HHHHHHHHHHHHHHHHH-------HHHHHHHH
Q 001374 146 HLDGALKECMRQIRNLKEEHEQKLQDFVLTKTKQWDKIRLEFE-----AKIANFEQELLRSAAEN-------ATLSRSLQ 213 (1091)
Q Consensus 146 hLd~aLKec~~qLr~~reeqeqki~~~~~~~~~e~e~~~~ELE-----aKLaElEkeLeelkaEl-------~aLeeqLE 213 (1091)
..++.|+....-||.+-+|.+. ..+-++||+.|.-++ ..+.++..++.++.... .....+++
T Consensus 188 kI~ell~yieerLreLEeEKee------L~~Yqkldk~rr~lEYtiYdrEl~E~~~~l~~le~~r~~~~e~s~~~~~~~~ 261 (1200)
T KOG0964|consen 188 KINELLKYIEERLRELEEEKEE------LEKYQKLDKERRSLEYTIYDRELNEINGELERLEEDRSSAPEESEQYIDALD 261 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHhHHH------HHHHHHHHHhHhhhhhhhhhhHHHHHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3455566666666666666554 456677777766554 23333333333333222 22223334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 001374 214 ERSNMLIKISEEKSQAEAEIELLKGNIEQCE 244 (1091)
Q Consensus 214 elqeeI~EL~eeiErlEgEi~LLkERIenlE 244 (1091)
...+++..+..++..++..+..+.+..+.+.
T Consensus 262 ~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~ 292 (1200)
T KOG0964|consen 262 KVEDESEDLKCEIKELENKLTNLREEKEQLK 292 (1200)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444333333
No 15
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.60 E-value=0.011 Score=78.85 Aligned_cols=63 Identities=16% Similarity=0.134 Sum_probs=33.4
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 172 FVLTKTKQWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIE 234 (1091)
Q Consensus 172 ~~~~~~~e~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~ 234 (1091)
.+....+.|+.++.+++.++..++..+..+...+....+.+......+......+..+..++.
T Consensus 402 ~~~~~~~~~~~~~~e~~~~~~~~q~~L~ei~~~l~~~eq~~~~~~e~~~~~~~~i~~~~~~l~ 464 (1311)
T TIGR00606 402 RQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQ 464 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444555555555555555555555555555555555555555555444444444444443
No 16
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.55 E-value=0.011 Score=76.36 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001374 944 DRDLAAAAERLAECQETILLLGKQLKS 970 (1091)
Q Consensus 944 EkEIaaAeeKLAEcQeTI~sLEKQLKs 970 (1091)
..++..+..++..++..+..+..+|..
T Consensus 914 ~~~l~~l~~~~~~~~~~~~~l~~~l~e 940 (1179)
T TIGR02168 914 RRELEELREKLAQLELRLEGLEVRIDN 940 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666666665
No 17
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=98.37 E-value=0.026 Score=72.02 Aligned_cols=60 Identities=17% Similarity=0.262 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 001374 808 LEEFEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQL 867 (1091)
Q Consensus 808 ~EelEqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selEeqL 867 (1091)
...++.++.+...+++.+..|.......+..|.+++..+.+|..++..++..+.....++
T Consensus 660 d~~ie~le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em 719 (1074)
T KOG0250|consen 660 DDEIEDLEREASRLQKEILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEM 719 (1074)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666655555555555555555555555555555444433333
No 18
>PRK03918 chromosome segregation protein; Provisional
Probab=98.35 E-value=0.029 Score=71.54 Aligned_cols=15 Identities=27% Similarity=0.432 Sum_probs=6.9
Q ss_pred CCCccCCCCCCCccc
Q 001374 1027 PLDLYTSPCSPSENE 1041 (1091)
Q Consensus 1027 ~~~~~~~~~~~s~~~ 1041 (1091)
|+-.+.-|...-|..
T Consensus 814 ~~lilDEp~~~lD~~ 828 (880)
T PRK03918 814 PLLILDEPTPFLDEE 828 (880)
T ss_pred CeEEEeCCCcccCHH
Confidence 444444455444443
No 19
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.11 E-value=0.12 Score=69.39 Aligned_cols=186 Identities=19% Similarity=0.207 Sum_probs=112.5
Q ss_pred HHHHHHHHHHhHHHHhhhhhhHHHHHhhhhHHHHHHHHHHHhhhHHHH------HHHHHHHHHHhhhHHHHHHHHHHHHH
Q 001374 119 AEAEALALKNHLESVTLSKLTAEDRAAHLDGALKECMRQIRNLKEEHE------QKLQDFVLTKTKQWDKIRLEFEAKIA 192 (1091)
Q Consensus 119 ae~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLKec~~qLr~~reeqe------qki~~~~~~~~~e~e~~~~ELEaKLa 192 (1091)
...+...+..+..-..+++..|.-+|..+.+-|++|-++.....++=. .+|.+....+..+|..-..++...|.
T Consensus 229 ~~~~~~~~q~~~~~l~q~~~eLs~~ie~~~~~ls~~k~t~~s~~~kf~~El~~q~kL~eL~ks~~ee~~~~~~el~~~i~ 308 (1822)
T KOG4674|consen 229 LKESLAELQEKNKSLKQQNEELSKKIESLNLELSKLKDTAESSEEKFEKELSTQKKLNELWKSKLEELSHEVAELQRAIE 308 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666666777788888888888899999888887755433 67888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH-------------------------------------
Q 001374 193 NFEQELLRSAAENATLSRSLQERSNMLI----KISEEKSQAEA------------------------------------- 231 (1091)
Q Consensus 193 ElEkeLeelkaEl~aLeeqLEelqeeI~----EL~eeiErlEg------------------------------------- 231 (1091)
++++-|......+......+......+. .+...+.++++
T Consensus 309 ~~~klled~~~~~~e~~d~l~e~~~sl~~~~~~~~k~~~~le~~l~~an~~~~~~~~~~~~s~~~a~~s~~~~~~~sLtk 388 (1822)
T KOG4674|consen 309 ELEKLLEDASERNKENTDQLKELEQSLSKLNEKLEKKVSRLEGELEDANDSLSATGESSMVSEKAALASSLIRPGSSLTK 388 (1822)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhcccchhhhHHHHHHhhcccchhHHH
Confidence 8866666555544444333322222111 11122222222
Q ss_pred ----------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001374 232 ----------EIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRG 301 (1091)
Q Consensus 232 ----------Ei~LLkERIenlEKEne~LK~EL~~LqeELEiL~EElE~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~ 301 (1091)
++..+.-.++.+.....+...++....-.++.-..+++........+..++....+++..++..+..+.+
T Consensus 389 ~ys~~~~~qqqle~~~lele~~~~~l~s~~eev~~~~p~lk~qr~~~e~~~~~~~~l~~el~~~~q~~~~~e~~~~~l~~ 468 (1822)
T KOG4674|consen 389 LYSKYSKLQQQLESLKLELERLQNILSSFKEEVKQKAPILKEQRSELERMQETKAELSEELDFSNQKIQKLEKELESLKK 468 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222223333333333333333333444455566666667777888888888888888888877766
Q ss_pred hhh
Q 001374 302 LVR 304 (1091)
Q Consensus 302 l~r 304 (1091)
..+
T Consensus 469 ~~~ 471 (1822)
T KOG4674|consen 469 QLN 471 (1822)
T ss_pred HHH
Confidence 544
No 20
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.98 E-value=0.21 Score=67.49 Aligned_cols=99 Identities=15% Similarity=0.122 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH---------------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 001374 830 ENLEMTKSQLYETEQLLAEVKAQLASAQKSNSL---------------AETQLKCMAESYRSLETHAQELEAEVNLLRAK 894 (1091)
Q Consensus 830 eklEel~~qLqelE~~LeELesQLesLqeS~se---------------lEeqLk~~~e~ledLesrL~eLeaElkeLqeK 894 (1091)
..++.++.+...++..+..++.++-.+..-.+- ...-...+...++.++..+..+..++.+.+.+
T Consensus 935 ~~~e~lr~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~l~~~~~~~~~Le~~Le~iE~~~~~areql~qaq~q 1014 (1486)
T PRK04863 935 EQFEQLKQDYQQAQQTQRDAKQQAFALTEVVQRRAHFSYEDAAEMLAKNSDLNEKLRQRLEQAEQERTRAREQLRQAQAQ 1014 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHhHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555556666666666555555442221 11122344455566666666666777777777
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhh
Q 001374 895 IESLENELQDEKMSHHNAMAKCKELEEQLQRNEN 928 (1091)
Q Consensus 895 VesLE~ELe~ek~~~eEleaK~~eLEeQLe~~~~ 928 (1091)
...++.++...+..+..+..++.+++.+|..+|.
T Consensus 1015 ~~q~~q~l~slksslq~~~e~L~E~eqe~~~~g~ 1048 (1486)
T PRK04863 1015 LAQYNQVLASLKSSYDAKRQMLQELKQELQDLGV 1048 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 7777777777777777888888888888888875
No 21
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.82 E-value=0.044 Score=66.34 Aligned_cols=43 Identities=16% Similarity=0.197 Sum_probs=22.0
Q ss_pred HHHHHHHHhHHHHhhhhhhHHHHHhhhhHHHHHHHHHHHhhhH
Q 001374 121 AEALALKNHLESVTLSKLTAEDRAAHLDGALKECMRQIRNLKE 163 (1091)
Q Consensus 121 ~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLKec~~qLr~~re 163 (1091)
.|-..|.+....+..++..++.++..|...|..-.+....++.
T Consensus 150 kE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~ 192 (546)
T PF07888_consen 150 KEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQ 192 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444555556666666666666544444433333
No 22
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.80 E-value=0.28 Score=63.29 Aligned_cols=64 Identities=25% Similarity=0.330 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcchhhHHHHh-hH---HHHHHHhhhhHHH----HHHHHHHHHhHHHHhhhh
Q 001374 74 VQTMEEQIKELNEKLSAANSEISAKEDLVKQ-HT---KVAEEAVSGWEKA----EAEALALKNHLESVTLSK 137 (1091)
Q Consensus 74 ~~~~~~~~k~l~ekls~a~~~~~~kd~lvkq-h~---kvaeeav~gweka----e~e~~~lK~~Le~~~~q~ 137 (1091)
...++..++..++|+..---+...|..-|++ |- +++..=..+|-+- |.+-+..+..|.-++++.
T Consensus 343 ~~~~~e~lk~~~ek~~~e~~~~~~k~e~~~~~~~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~ 414 (1293)
T KOG0996|consen 343 LEKIEEGLKDENEKFDIESNEEVEKNEAVKKEIKERAKELKNKFESLKKKFQDLEREDVKREEKLKRLTSKI 414 (1293)
T ss_pred HHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888888887555555566655555 32 2333223455443 344444444444444443
No 23
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.80 E-value=0.075 Score=59.88 Aligned_cols=38 Identities=24% Similarity=0.363 Sum_probs=31.2
Q ss_pred hhHHHHHHHHHHHHhHHHHhhhhhhHHHHHhhhhHHHH
Q 001374 115 GWEKAEAEALALKNHLESVTLSKLTAEDRAAHLDGALK 152 (1091)
Q Consensus 115 gwekae~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLK 152 (1091)
=-..++.++..+++.|++++.....|+.++..|.+=|.
T Consensus 97 ~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~ 134 (312)
T PF00038_consen 97 ERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELE 134 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHH
Confidence 33456789999999999999999999999988876543
No 24
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.79 E-value=0.01 Score=72.61 Aligned_cols=230 Identities=17% Similarity=0.261 Sum_probs=146.3
Q ss_pred HHHHHhhhhHHHHHHHHHHHhhhHHHH-H---HHHH----HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 140 AEDRAAHLDGALKECMRQIRNLKEEHE-Q---KLQD----FVLTKTKQWDKIRLEFEAKIANFEQELLRSAAENATLSRS 211 (1091)
Q Consensus 140 le~rv~hLd~aLKec~~qLr~~reeqe-q---ki~~----~~~~~~~e~e~~~~ELEaKLaElEkeLeelkaEl~aLeeq 211 (1091)
++.++..|...|++|...|..++=+.- . .|.+ .-..-.+| -.++...+.....+...+..++.++..+...
T Consensus 254 i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE-~~A~~~vek~~~~l~~~l~~~~e~~~~l~~E 332 (569)
T PRK04778 254 IEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILERE-VKARKYVEKNSDTLPDFLEHAKEQNKELKEE 332 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666665555432211 1 1111 11111111 1233334444444455555555555555555
Q ss_pred HHHHHHH----------HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001374 212 LQERSNM----------LIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQ 281 (1091)
Q Consensus 212 LEelqee----------I~EL~eeiErlEgEi~LLkERIenlEKEne~LK~EL~~LqeELEiL~EElE~s~qsaeal~KQ 281 (1091)
++.++.. +..+..++..++.++..+.+++.........++.++..+.++++.+..+.......+..+.+.
T Consensus 333 i~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~ 412 (569)
T PRK04778 333 IDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKD 412 (569)
T ss_pred HHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555 566777778888888878888888888888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcc-CCC-hHHHHHHHHHH----hhhcCCcCCccccCCCCCCCCCCCCCCcccchh-h
Q 001374 282 HMEGVKKIAKLEAECQRLRGLVRKK-LPG-PAALAQMKMEV----ESLGRDYGDSRLKRSPVKPTSPHLSPVSEFSLD-N 354 (1091)
Q Consensus 282 ~lEl~KKLaKLEaEcqrLr~l~rk~-lpg-paa~a~mk~ev----~~l~~~~~~~r~rr~~~~~~~~~~~~~~~~~~~-~ 354 (1091)
..+..++|.++...+..++.+++++ +|| |.-.-.|-.+| +.|..... +-| +--.... -
T Consensus 413 E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~y~~~~~~~~~~i~~l~~~L~-----~g~----------VNm~ai~~e 477 (569)
T PRK04778 413 ELEAREKLERYRNKLHEIKRYLEKSNLPGLPEDYLEMFFEVSDEIEALAEELE-----EKP----------INMEAVNRL 477 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHhc-----cCC----------CCHHHHHHH
Confidence 9999999999999999999999888 999 77766655544 44443211 111 1111122 2
Q ss_pred hHhhhhhhHHHHHHHHhHHHHHHHHHHHHHh
Q 001374 355 VQKFQKENEFLTERLLAMEEETKMLKEALAK 385 (1091)
Q Consensus 355 ~~~~~~~~~~l~~rl~~~eee~k~lke~l~~ 385 (1091)
........+||..+...|.+....+-+++..
T Consensus 478 ~~e~~~~~~~L~~q~~dL~~~a~~lE~~Iqy 508 (569)
T PRK04778 478 LEEATEDVETLEEETEELVENATLTEQLIQY 508 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666666666666666555555444
No 25
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.77 E-value=0.28 Score=62.43 Aligned_cols=195 Identities=16% Similarity=0.116 Sum_probs=111.9
Q ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhHHHHhhhhhhHHH-HHhhhhHHHHHHHHHHHhhhHHHHHHHH------HHHH
Q 001374 102 VKQHTKVAEEAVSGWEKAEAEALALKNHLESVTLSKLTAED-RAAHLDGALKECMRQIRNLKEEHEQKLQ------DFVL 174 (1091)
Q Consensus 102 vkqh~kvaeeav~gwekae~e~~~lK~~Le~~~~q~~~le~-rv~hLd~aLKec~~qLr~~reeqeqki~------~~~~ 174 (1091)
++--+..++++..+-.+-........+.++....++.++++ |-..|.+++|---.++..++.+--+.-. +++.
T Consensus 246 ~~~~~~~i~e~~~~i~~l~e~~~k~~~ei~~le~~ikei~~~rd~em~~~~~~L~~~~~~~~~~~tr~~t~l~~~~~tl~ 325 (1174)
T KOG0933|consen 246 RKNSAHEIEEMKDKIAKLDESLGKTDKEIESLEKEIKEIEQQRDAEMGGEVKALEDKLDSLQNEITREETSLNLKKETLN 325 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44445566677777666666666666666666666655554 4456666666666666666555442221 2222
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 001374 175 TKTKQWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYEL 254 (1091)
Q Consensus 175 ~~~~e~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIenlEKEne~LK~EL 254 (1091)
.... -..++...+.+....|.+-+..+.........+++...+.....+.++..+.-+..-+...+..-.-|..+|
T Consensus 326 ~e~~----k~e~i~~~i~e~~~~l~~k~~~~~~~~~~~~~~ke~~~~~s~~~e~~e~~~eslt~G~Ss~~~~e~~l~~ql 401 (1174)
T KOG0933|consen 326 GEEE----KLEEIRKNIEEDRKKLKEKEKAMAKVEEGYEKLKEAFQEDSKLLEKAEELVESLTAGLSSNEDEEKTLEDQL 401 (1174)
T ss_pred hhHH----HHHHHHHhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccchhhHHHHH
Confidence 2222 222344445555555555556666655555666666666666666666666666666666665555566666
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001374 255 HIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLR 300 (1091)
Q Consensus 255 ~~LqeELEiL~EElE~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr 300 (1091)
......+.....++....-.+.-+++++....-+++...+++....
T Consensus 402 ~~aK~~~~~~~t~~k~a~~k~e~~~~elk~~e~e~~t~~~~~~~~~ 447 (1174)
T KOG0933|consen 402 RDAKITLSEASTEIKQAKLKLEHLRKELKLREGELATASAEYVKDI 447 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHH
Confidence 6666665555556666655666666666666666655555554443
No 26
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.69 E-value=0.044 Score=70.48 Aligned_cols=240 Identities=22% Similarity=0.225 Sum_probs=136.0
Q ss_pred HHHHHHHHHHHHHhhhhcchhhHHHHhhHHHHHHHhhhhHHH---HHHHHHHHHhHHHHhhhhhhHHHHHhhhhHHHHHH
Q 001374 78 EEQIKELNEKLSAANSEISAKEDLVKQHTKVAEEAVSGWEKA---EAEALALKNHLESVTLSKLTAEDRAAHLDGALKEC 154 (1091)
Q Consensus 78 ~~~~k~l~ekls~a~~~~~~kd~lvkqh~kvaeeav~gweka---e~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLKec 154 (1091)
....+..++|++-.-.....=..+|.|-..-.+.|-----.+ ...+.+++++|+....--.+-=+.+.+|---.++|
T Consensus 493 q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~ 572 (1317)
T KOG0612|consen 493 QHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEAELDMRAESEDAGKLRKHSKEL 572 (1317)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhhh
Confidence 345555555555544444433444444444444432111122 46788889999988888777778888888899999
Q ss_pred HHHHHhhhH---HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 155 MRQIRNLKE---EHEQKLQDFVLTKTKQWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEA 231 (1091)
Q Consensus 155 ~~qLr~~re---eqeqki~~~~~~~~~e~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLEelqeeI~EL~eeiErlEg 231 (1091)
+.||.+.++ +-+.++... ........+....+....................+...+..+++.+....-++.+++.
T Consensus 573 ~~~iq~~~e~~~~~~d~l~~l-e~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~e 651 (1317)
T KOG0612|consen 573 SKQIQQELEENRDLEDKLSLL-EESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKELLKVEE 651 (1317)
T ss_pred hHHHHHHhhccccHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHH
Confidence 999998888 333343333 1122222333333333333333444444455555555666666666666666666666
Q ss_pred HHHHHHhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCC
Q 001374 232 EIELLKGNIEQCER--EINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLVRKKLPG 309 (1091)
Q Consensus 232 Ei~LLkERIenlEK--Ene~LK~EL~~LqeELEiL~EElE~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l~rk~lpg 309 (1091)
......+++.+.++ ....+.+++..++.+++..+.|-... .+.....+..+...++..-...-..+.++
T Consensus 652 l~r~~~e~~~~~ek~~~e~~~e~~lk~~q~~~eq~~~E~~~~--~L~~~e~~~~e~~~~lseek~ar~k~e~~------- 722 (1317)
T KOG0612|consen 652 LKRENQERISDSEKEALEIKLERKLKMLQNELEQENAEHHRL--RLQDKEAQMKEIESKLSEEKSAREKAENL------- 722 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHhcccccHHHHHHHH-------
Confidence 66666777777777 44556666666676666666655554 23333444444444444433333333332
Q ss_pred hHHHHHHHHHHhhhcCCcCCc
Q 001374 310 PAALAQMKMEVESLGRDYGDS 330 (1091)
Q Consensus 310 paa~a~mk~ev~~l~~~~~~~ 330 (1091)
+-+|-.|+++|-.|+.-+
T Consensus 723 ---~~~i~~e~e~L~~d~~~~ 740 (1317)
T KOG0612|consen 723 ---LLEIEAELEYLSNDYKQS 740 (1317)
T ss_pred ---HHHHHHHHHHHhhhhhhh
Confidence 346888999988776443
No 27
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.65 E-value=0.065 Score=58.83 Aligned_cols=35 Identities=31% Similarity=0.342 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHhHHHHhhhhhhHHHHHhhhhHHH
Q 001374 117 EKAEAEALALKNHLESVTLSKLTAEDRAAHLDGAL 151 (1091)
Q Consensus 117 ekae~e~~~lK~~Le~~~~q~~~le~rv~hLd~aL 151 (1091)
++||+|+.+|.+.+..+....-..++|+.....-|
T Consensus 32 ~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL 66 (237)
T PF00261_consen 32 EKAEAEVASLQRRIQLLEEELERAEERLEEATEKL 66 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 46788888888777766665555555554444333
No 28
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.64 E-value=0.038 Score=60.65 Aligned_cols=40 Identities=25% Similarity=0.255 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHHhHHHHhhhhhhHHHHHhhhhHHHHHHH
Q 001374 116 WEKAEAEALALKNHLESVTLSKLTAEDRAAHLDGALKECM 155 (1091)
Q Consensus 116 wekae~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLKec~ 155 (1091)
++-|+..+......+..+.+.....++|+..|+..|++..
T Consensus 66 L~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~ 105 (237)
T PF00261_consen 66 LEEAEKRADESERARKVLENREQSDEERIEELEQQLKEAK 105 (237)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444444444445555555555555443
No 29
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.62 E-value=0.63 Score=62.16 Aligned_cols=64 Identities=14% Similarity=0.264 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001374 240 IEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLV 303 (1091)
Q Consensus 240 IenlEKEne~LK~EL~~LqeELEiL~EElE~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l~ 303 (1091)
++.++..+.....+.......+..+..+....++..+.+..++......+.++++.+..+..++
T Consensus 471 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L 534 (1201)
T PF12128_consen 471 LEQADKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQL 534 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333444444444444444444444455555555555555556666666666666666655553
No 30
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=97.57 E-value=0.8 Score=62.16 Aligned_cols=79 Identities=20% Similarity=0.331 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcchhhHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhHHHHhhhhhhHHHHHhhhhHHHH
Q 001374 73 QVQTMEEQIKELNEKLSAANSEISAKEDLVKQHTKVAEEAVSGWEKAEAEALALKNHLESVTLSKLTAEDRAAHLDGALK 152 (1091)
Q Consensus 73 ~~~~~~~~~k~l~ekls~a~~~~~~kd~lvkqh~kvaeeav~gwekae~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLK 152 (1091)
+++.+...++.|+++|+.+...+.....-+..|+ ++.++++..++-..+.+..++.-..-|++-|.
T Consensus 137 ele~l~~~n~~l~~ql~ss~~~~~e~e~r~~e~~--------------s~~vs~q~k~~rl~QEksll~s~~~wL~~eL~ 202 (1822)
T KOG4674|consen 137 ELEALESENKDLNDQLKSSTKTLSELEARLQETQ--------------SEDVSSQLKEERLEQEKSLLESENKWLSRELS 202 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3556677777888887777666655555444443 56667888899999999999999999998888
Q ss_pred HHHHHHHhhhHHH
Q 001374 153 ECMRQIRNLKEEH 165 (1091)
Q Consensus 153 ec~~qLr~~reeq 165 (1091)
....+|-..|-++
T Consensus 203 ~~~ekll~~~re~ 215 (1822)
T KOG4674|consen 203 KVNEKLLSLRREH 215 (1822)
T ss_pred HHHHHHHHHHhhh
Confidence 8888887776553
No 31
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.56 E-value=0.74 Score=61.48 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcCC
Q 001374 953 RLAECQETILLLGKQLKSLRPQ 974 (1091)
Q Consensus 953 KLAEcQeTI~sLEKQLKsLa~q 974 (1091)
.+..++.+|..|+++|+.....
T Consensus 772 ~I~~l~~~i~~L~~~l~~ie~~ 793 (1201)
T PF12128_consen 772 RIQQLKQEIEQLEKELKRIEER 793 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 5666677777777777766554
No 32
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.55 E-value=0.016 Score=69.95 Aligned_cols=105 Identities=17% Similarity=0.227 Sum_probs=65.7
Q ss_pred HhhhhcchhhHHHHhhHHHHHHHhhh----hHHHHHHHHHHHHhHHHHhhhhhhHHHHHhhhhHHHHHHHHHHHhhhHHH
Q 001374 90 AANSEISAKEDLVKQHTKVAEEAVSG----WEKAEAEALALKNHLESVTLSKLTAEDRAAHLDGALKECMRQIRNLKEEH 165 (1091)
Q Consensus 90 ~a~~~~~~kd~lvkqh~kvaeeav~g----wekae~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLKec~~qLr~~reeq 165 (1091)
.++.++.|+.+++|--.|-.|+.+.- -..-..++..+|++|++.+.-...++-++.-|- ..|.+.+..+
T Consensus 148 ~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Ll-------eel~f~~~~h 220 (546)
T KOG0977|consen 148 SRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLL-------EELAFLKRIH 220 (546)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-------HHHHHHHhcc
Confidence 44667778888888888888887642 233357888899999999988888887776553 3445555555
Q ss_pred HHHHHHHHHHHhhhH-----HHHHHHHHHHHHHHHHHHHHH
Q 001374 166 EQKLQDFVLTKTKQW-----DKIRLEFEAKIANFEQELLRS 201 (1091)
Q Consensus 166 eqki~~~~~~~~~e~-----e~~~~ELEaKLaElEkeLeel 201 (1091)
++.|.+......++- +-++.+|...|.++.++.+..
T Consensus 221 ~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~ 261 (546)
T KOG0977|consen 221 KQEIEEERRKARRDTTADNREYFKNELALAIREIRAQYEAI 261 (546)
T ss_pred HHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 544444433333332 334455666666655544443
No 33
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.49 E-value=0.13 Score=63.58 Aligned_cols=182 Identities=20% Similarity=0.253 Sum_probs=112.8
Q ss_pred HHHHhhHHHHHHHhhhhHHHHHHHHHHHHhHHHHhhhhhhHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhh
Q 001374 100 DLVKQHTKVAEEAVSGWEKAEAEALALKNHLESVTLSKLTAEDRAAHLDGALKECMRQIRNLKEEHEQKLQDFVLTKTKQ 179 (1091)
Q Consensus 100 ~lvkqh~kvaeeav~gwekae~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLKec~~qLr~~reeqeqki~~~~~~~~~e 179 (1091)
.|..|+.|-.|| |.-=|++|.|-- -+..+|.-.++-+.||-++ |.-|+|..-|||++.|-.+.-....+|
T Consensus 335 ~leeqqqreree-~eqkEreE~ekk-ererqEqErk~qlElekqL--------erQReiE~qrEEerkkeie~rEaar~E 404 (1118)
T KOG1029|consen 335 ALEEQQQREREE-VEQKEREEEEKK-ERERQEQERKAQLELEKQL--------ERQREIERQREEERKKEIERREAAREE 404 (1118)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666665 544444443321 1222233233333343333 345777778888887766654333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 001374 180 WDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSK 259 (1091)
Q Consensus 180 ~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIenlEKEne~LK~EL~~Lqe 259 (1091)
.|+.| +++=-++....+..+...-++.|+.++..+.+++-++..|+.++..+...+.+.+-.+..+..
T Consensus 405 lEkqR------------qlewErar~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt 472 (1118)
T KOG1029|consen 405 LEKQR------------QLEWERARRQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKT 472 (1118)
T ss_pred HHHHH------------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHH
Confidence 33222 222223445556666666677777777777777777777888888887777777777777777
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001374 260 ELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLV 303 (1091)
Q Consensus 260 ELEiL~EElE~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l~ 303 (1091)
+++..+..++.....++.+..++.|++.++.+|--|-+.|.+-+
T Consensus 473 ~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~ql 516 (1118)
T KOG1029|consen 473 EIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQL 516 (1118)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 77777777777777777777777777777777777766665543
No 34
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.36 E-value=0.1 Score=66.06 Aligned_cols=84 Identities=18% Similarity=0.262 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcchhhHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhHHHHhhhhhhHHHHHhhhhHHHHH
Q 001374 74 VQTMEEQIKELNEKLSAANSEISAKEDLVKQHTKVAEEAVSGWEKAEAEALALKNHLESVTLSKLTAEDRAAHLDGALKE 153 (1091)
Q Consensus 74 ~~~~~~~~k~l~ekls~a~~~~~~kd~lvkqh~kvaeeav~gwekae~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLKe 153 (1091)
...|.-+|..|.-+|-.+...| -+-.+..+.+..--...-.|+..++-.++....++..|+.|+..|++.|++
T Consensus 338 ~~~Lqsdve~Lr~rle~k~~~l-------~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~e 410 (775)
T PF10174_consen 338 AEMLQSDVEALRFRLEEKNSQL-------EKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLRE 410 (775)
T ss_pred HHHHHHhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555554444444 444555555554444445788889999999999999999999999999999
Q ss_pred HHHHHHhhhHH
Q 001374 154 CMRQIRNLKEE 164 (1091)
Q Consensus 154 c~~qLr~~ree 164 (1091)
..+||...++-
T Consensus 411 kd~ql~~~k~R 421 (775)
T PF10174_consen 411 KDRQLDEEKER 421 (775)
T ss_pred HHHHHHHHHHH
Confidence 99999887763
No 35
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.32 E-value=1 Score=57.64 Aligned_cols=243 Identities=24% Similarity=0.252 Sum_probs=109.4
Q ss_pred hhhhcchHHHHHHHHHHHHHHHHHHHHhhhhcchhhHHHHh--hHHHHHHHhhhhHHHHHHHHHHHHhHHHHhhhhhhHH
Q 001374 64 ENQVKTNEEQVQTMEEQIKELNEKLSAANSEISAKEDLVKQ--HTKVAEEAVSGWEKAEAEALALKNHLESVTLSKLTAE 141 (1091)
Q Consensus 64 e~~v~~~~~~~~~~~~~~k~l~ekls~a~~~~~~kd~lvkq--h~kvaeeav~gwekae~e~~~lK~~Le~~~~q~~~le 141 (1091)
++.+++....+.+..+.+..|.+.+.....+|...++-||. .++-++=.+ ++-+|-.+|+..+.-....+
T Consensus 243 ~~~~~~~~~~i~e~~~~i~~l~e~~~k~~~ei~~le~~ikei~~~rd~em~~--------~~~~L~~~~~~~~~~~tr~~ 314 (1174)
T KOG0933|consen 243 EEKRKNSAHEIEEMKDKIAKLDESLGKTDKEIESLEKEIKEIEQQRDAEMGG--------EVKALEDKLDSLQNEITREE 314 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhch--------hhhhHHHHHHHHHHHHHHHH
Confidence 33444444556677888889999999999988777776664 223333222 22344444444444444444
Q ss_pred HHHhhhhHHH---HHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 001374 142 DRAAHLDGAL---KECMRQIRNLKEEHEQKLQDFVLTKTKQWDKIRLE---FEAKIANFEQELLRSAAENATLSRSL--- 212 (1091)
Q Consensus 142 ~rv~hLd~aL---Kec~~qLr~~reeqeqki~~~~~~~~~e~e~~~~E---LEaKLaElEkeLeelkaEl~aLeeqL--- 212 (1091)
--+.-+.++| ++..++++.--++.+..+. ++.++..+.... +.....+..+-+++.+..+..+..-+
T Consensus 315 t~l~~~~~tl~~e~~k~e~i~~~i~e~~~~l~----~k~~~~~~~~~~~~~~ke~~~~~s~~~e~~e~~~eslt~G~Ss~ 390 (1174)
T KOG0933|consen 315 TSLNLKKETLNGEEEKLEEIRKNIEEDRKKLK----EKEKAMAKVEEGYEKLKEAFQEDSKLLEKAEELVESLTAGLSSN 390 (1174)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHH----HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Confidence 3343333333 3334444444444332221 122222221111 11111111112222222222221111
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 001374 213 ----QERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKK 288 (1091)
Q Consensus 213 ----EelqeeI~EL~eeiErlEgEi~LLkERIenlEKEne~LK~EL~~LqeELEiL~EElE~s~qsaeal~KQ~lEl~KK 288 (1091)
--++.++......+..+...+..+.-+++++.+++...+-++....++-.....+++.++..++.+.+++..+-=+
T Consensus 391 ~~~e~~l~~ql~~aK~~~~~~~t~~k~a~~k~e~~~~elk~~e~e~~t~~~~~~~~~~~ld~~q~eve~l~~~l~~l~~~ 470 (1174)
T KOG0933|consen 391 EDEEKTLEDQLRDAKITLSEASTEIKQAKLKLEHLRKELKLREGELATASAEYVKDIEELDALQNEVEKLKKRLQSLGYK 470 (1174)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 1122233333344444444444455555555555555555555444444444444444444445555554444444
Q ss_pred HHHHHHHHHHHhhhhhccCCChHHHHHHHHHHhhhcC
Q 001374 289 IAKLEAECQRLRGLVRKKLPGPAALAQMKMEVESLGR 325 (1091)
Q Consensus 289 LaKLEaEcqrLr~l~rk~lpgpaa~a~mk~ev~~l~~ 325 (1091)
+...++-.++...|.+- +-+.+++++.|-+
T Consensus 471 ~~~~e~l~q~~~~l~~~-------~~~lk~~~~~l~a 500 (1174)
T KOG0933|consen 471 IGQEEALKQRRAKLHED-------IGRLKDELDRLLA 500 (1174)
T ss_pred cchHHHHHHHHHHHHHH-------HHHHHHHHHHHHh
Confidence 44444444444444332 2467788887654
No 36
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.32 E-value=0.41 Score=58.38 Aligned_cols=45 Identities=22% Similarity=0.179 Sum_probs=31.5
Q ss_pred HHHHhhhhHHHHHHHHHHHHhHHHHhhhhhhHHHHHhhhhHHHHH
Q 001374 109 AEEAVSGWEKAEAEALALKNHLESVTLSKLTAEDRAAHLDGALKE 153 (1091)
Q Consensus 109 aeeav~gwekae~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLKe 153 (1091)
.++....++.+..|...|+.+++.+..++..|++.+..|-.-.++
T Consensus 194 ~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~~E 238 (546)
T PF07888_consen 194 QKELTESSEELKEERESLKEQLAEARQRIRELEEDIKTLTQKEKE 238 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455677778888888888888887777777777666555433
No 37
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.31 E-value=0.12 Score=62.73 Aligned_cols=68 Identities=16% Similarity=0.050 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 001374 220 IKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVK 287 (1091)
Q Consensus 220 ~EL~eeiErlEgEi~LLkERIenlEKEne~LK~EL~~LqeELEiL~EElE~s~qsaeal~KQ~lEl~K 287 (1091)
.++...+..++..+......+..+..++..|+.++..++.+...+..++..+...++.+.....++.+
T Consensus 333 ~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~k 400 (562)
T PHA02562 333 NEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVK 400 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444445555555555444444444444444444444444444433
No 38
>PRK03918 chromosome segregation protein; Provisional
Probab=97.31 E-value=1.1 Score=57.58 Aligned_cols=27 Identities=33% Similarity=0.363 Sum_probs=13.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHhhhhhHH
Q 001374 365 LTERLLAMEEETKMLKEALAKRNSELQ 391 (1091)
Q Consensus 365 l~~rl~~~eee~k~lke~l~~k~~elq 391 (1091)
+..++..++.+.+.|++-+..-+.++.
T Consensus 457 ~~~ei~~l~~~~~~l~~~~~~l~~~~~ 483 (880)
T PRK03918 457 YTAELKRIEKELKEIEEKERKLRKELR 483 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555554444444444
No 39
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.30 E-value=1 Score=57.28 Aligned_cols=118 Identities=25% Similarity=0.310 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHH
Q 001374 809 EEFEELKLEKDNLATDLARCT--------ENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETH 880 (1091)
Q Consensus 809 EelEqLEsEkeelE~eLee~~--------eklEel~~qLqelE~~LeELesQLesLqeS~selEeqLk~~~e~ledLesr 880 (1091)
..++....++..+...|.... +.++..+..+..+...+..|+..|.....++..+..+...+.....-..++
T Consensus 436 ~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s~ 515 (775)
T PF10174_consen 436 ETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLASSQEKKDSE 515 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchhhhH
Confidence 456666666666666655443 444444455555555555555555555444444455555555555555667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhh
Q 001374 881 AQELEAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNE 927 (1091)
Q Consensus 881 L~eLeaElkeLqeKVesLE~ELe~ek~~~eEleaK~~eLEeQLe~~~ 927 (1091)
+..+.+.+.....++..++.++...+.. .++..+|..|+..+..+.
T Consensus 516 i~~l~I~lEk~rek~~kl~~ql~k~~~~-~e~~~r~~~Le~ev~~~~ 561 (775)
T PF10174_consen 516 IERLEIELEKKREKHEKLEKQLEKLRAN-AELRDRIQQLEQEVTRYR 561 (775)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhC-HhhcchHHHHHHHHHHHH
Confidence 7777888888888888888888874443 466777777777765544
No 40
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.29 E-value=0.47 Score=57.86 Aligned_cols=292 Identities=17% Similarity=0.192 Sum_probs=150.6
Q ss_pred HHHHHHHHHHHHHhhhhcchhhHHHHhhHHH------HHHHhh---hhHHH--HHHHHHHHHhHHHHhhhhhhHHHHHhh
Q 001374 78 EEQIKELNEKLSAANSEISAKEDLVKQHTKV------AEEAVS---GWEKA--EAEALALKNHLESVTLSKLTAEDRAAH 146 (1091)
Q Consensus 78 ~~~~k~l~ekls~a~~~~~~kd~lvkqh~kv------aeeav~---gweka--e~e~~~lK~~Le~~~~q~~~le~rv~h 146 (1091)
.+.|..||++|+.-..-+. -|-.||.+. .+.+|. |-=|+ |+|....++.|+++......++..+..
T Consensus 41 K~El~~LNDRLA~YIekVR---~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~k 117 (546)
T KOG0977|consen 41 KKELQELNDRLAVYIEKVR---FLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITK 117 (546)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777777776655552 233444443 333332 22233 899999999999999999999988887
Q ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 147 LDGALKECMRQIRNLKEEHEQKLQDFVLTKTKQWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEK 226 (1091)
Q Consensus 147 Ld~aLKec~~qLr~~reeqeqki~~~~~~~~~e~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLEelqeeI~EL~eei 226 (1091)
|.+-+++--..+. +.++ -..++-.+..+|...-..+++++.-+......+..++..|..+...+...|..+...+
T Consensus 118 l~~e~~elr~~~~----~~~k-~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~l 192 (546)
T KOG0977|consen 118 LREELKELRKKLE----KAEK-ERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQL 192 (546)
T ss_pred hHHHHHHHHHHHH----HHHH-HHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 7776665544443 2222 2223355666777766666666666655555555555555555444444444444433
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH----HHHHHHHH----HH--HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-----
Q 001374 227 SQAEAEIELLKGNIEQCEREINSAK----YELHIVSK----EL--EIRNEEKNMSMRSAEAANKQHMEGVKKIAK----- 291 (1091)
Q Consensus 227 ErlEgEi~LLkERIenlEKEne~LK----~EL~~Lqe----EL--EiL~EElE~s~qsaeal~KQ~lEl~KKLaK----- 291 (1091)
.+-..-..-++.+++.+..++..++ .+|..... .. +.+..=...+..++..+..++......-.+
T Consensus 193 d~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~~~nR~diE~~ 272 (546)
T KOG0977|consen 193 DDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKNELALAIREIRAQYEAISRQNRKDIESW 272 (546)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3322222222333333333332222 11111111 11 111111223333344444444333322211
Q ss_pred HHHHHHHHhhhhhccCCChHHHHHHHHHHhhhcCCcCCccccCCCCCCCCCCCCCCcccchhhhHhhhhhhHHHHHHHHh
Q 001374 292 LEAECQRLRGLVRKKLPGPAALAQMKMEVESLGRDYGDSRLKRSPVKPTSPHLSPVSEFSLDNVQKFQKENEFLTERLLA 371 (1091)
Q Consensus 292 LEaEcqrLr~l~rk~lpgpaa~a~mk~ev~~l~~~~~~~r~rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~rl~~ 371 (1091)
+...+++++.- .-|+-....+-+.||...-....+.|. .+. .+...|.+|.+|+..
T Consensus 273 Y~~kI~~i~~~---~~~~~~~~~~~rEEl~~~R~~i~~Lr~-------------kls--------elE~~n~~L~~~I~d 328 (546)
T KOG0977|consen 273 YKRKIQEIRTS---AERANVEQNYAREELRRIRSRISGLRA-------------KLS--------ELESRNSALEKRIED 328 (546)
T ss_pred HHHHHHHHHhh---hccccchhHHHHHHHHHHHhcccchhh-------------hhc--------cccccChhHHHHHHH
Confidence 22222332211 223333444555666654332222221 111 223345667777665
Q ss_pred H----HHHHHHHHHHHHhhhhhHHHHHHHHHHhh
Q 001374 372 M----EEETKMLKEALAKRNSELQASRNLCAKTA 401 (1091)
Q Consensus 372 ~----eee~k~lke~l~~k~~elq~sr~~~a~t~ 401 (1091)
+ +++.+..-.+|+.|.+++...|-=|..-.
T Consensus 329 L~~ql~e~~r~~e~~L~~kd~~i~~mReec~~l~ 362 (546)
T KOG0977|consen 329 LEYQLDEDQRSFEQALNDKDAEIAKMREECQQLS 362 (546)
T ss_pred HHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 5 47789999999999999999998888643
No 41
>PRK11637 AmiB activator; Provisional
Probab=97.25 E-value=0.2 Score=59.39 Aligned_cols=89 Identities=10% Similarity=0.142 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHhhhhcchhhHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhHHHHhhhhhhHHHHHhhhhHHHHHHHH
Q 001374 77 MEEQIKELNEKLSAANSEISAKEDLVKQHTKVAEEAVSGWEKAEAEALALKNHLESVTLSKLTAEDRAAHLDGALKECMR 156 (1091)
Q Consensus 77 ~~~~~k~l~ekls~a~~~~~~kd~lvkqh~kvaeeav~gwekae~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLKec~~ 156 (1091)
+.++++.+..++.....++.....-.+ ++-.-.+..+.++..+..+|.....+...++.++..|+..|.+--.
T Consensus 45 ~~~~l~~l~~qi~~~~~~i~~~~~~~~-------~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~ 117 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSVRQQQQQRA-------SLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQ 117 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666555532211111 1112233344555555555555555555555555555555555555
Q ss_pred HHHhhhHHHHHHHHHH
Q 001374 157 QIRNLKEEHEQKLQDF 172 (1091)
Q Consensus 157 qLr~~reeqeqki~~~ 172 (1091)
+|...++.-.+++...
T Consensus 118 ~l~~~~~~l~~rlra~ 133 (428)
T PRK11637 118 QQAAQERLLAAQLDAA 133 (428)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555555555443
No 42
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.22 E-value=1.4 Score=57.13 Aligned_cols=111 Identities=20% Similarity=0.212 Sum_probs=68.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH----------HHHHHHhHHH
Q 001374 807 SLEEFEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQ----------LKCMAESYRS 876 (1091)
Q Consensus 807 s~EelEqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selEeq----------Lk~~~e~led 876 (1091)
+.-++.+++.++..+++.+..+...++++...++.+...+..++..+......+.+++.- ++.+...+..
T Consensus 666 le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n~~e~~~~~~~~~~~l~~ei~~ 745 (1074)
T KOG0250|consen 666 LEREASRLQKEILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKNTAEEKQVDISKLEDLAREIKK 745 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHHHHHH
Confidence 444677788888888888888888888888888888888888888888887777776662 2222223333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 001374 877 LETHAQELEAEVNLLRAKIESLENELQDEKMSHHNAMAKCK 917 (1091)
Q Consensus 877 LesrL~eLeaElkeLqeKVesLE~ELe~ek~~~eEleaK~~ 917 (1091)
....+.+.++.+..++++++.++.+...+...-.....+++
T Consensus 746 ~~~eIe~~~~~~e~l~~e~e~~~~e~~e~~~~~~~~~~~l~ 786 (1074)
T KOG0250|consen 746 KEKEIEEKEAPLEKLKEELEHIELEAQELEEYYAAGREKLQ 786 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444444444443333333
No 43
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.22 E-value=0.23 Score=62.43 Aligned_cols=146 Identities=19% Similarity=0.232 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHhHHHHhhhhhhHHHHHhhh---hHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 001374 118 KAEAEALALKNHLESVTLSKLTAEDRAAHL---DGALKECMRQIRNLKEEHEQKLQDFVLTKTKQWDKIRLEFEAKIANF 194 (1091)
Q Consensus 118 kae~e~~~lK~~Le~~~~q~~~le~rv~hL---d~aLKec~~qLr~~reeqeqki~~~~~~~~~e~e~~~~ELEaKLaEl 194 (1091)
+-|+|+..||..|....+.=..|..+++.| |..||.|+.||+.=-|+=+-|++..+..+-++-. ....+|.+|.+.
T Consensus 422 rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq-~l~~LEkrL~eE 500 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQ-SLQQLEKRLAEE 500 (697)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 789999999999999999999999997766 5679999999999999999999998665544422 224566666665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 195 EQELLRSAAENATLSRSLQERSNMLIKISEEKSQA--------EAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNE 266 (1091)
Q Consensus 195 EkeLeelkaEl~aLeeqLEelqeeI~EL~eeiErl--------EgEi~LLkERIenlEKEne~LK~EL~~LqeELEiL~E 266 (1091)
......+.+++.+..++..... ....+. ..--..++.|+..++.++..|+.++...++++..+..
T Consensus 501 ~~~R~~lEkQL~eErk~r~~ee-------~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~ 573 (697)
T PF09726_consen 501 RRQRASLEKQLQEERKARKEEE-------EKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELES 573 (697)
T ss_pred HHHHHHHHHHHHHHHHHHhHHH-------HhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555544443322211 111111 0112246677777777777777777777777666666
Q ss_pred HHHHh
Q 001374 267 EKNMS 271 (1091)
Q Consensus 267 ElE~s 271 (1091)
+...+
T Consensus 574 ~~~~l 578 (697)
T PF09726_consen 574 ELQEL 578 (697)
T ss_pred HHHHH
Confidence 66433
No 44
>PRK11637 AmiB activator; Provisional
Probab=97.16 E-value=0.32 Score=57.70 Aligned_cols=42 Identities=12% Similarity=0.121 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhHHHHhhhhhhHHHHHhhhhHHHHHHHHHHHh
Q 001374 119 AEAEALALKNHLESVTLSKLTAEDRAAHLDGALKECMRQIRN 160 (1091)
Q Consensus 119 ae~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLKec~~qLr~ 160 (1091)
.+.++..+..+++....+...++.++..+...|+.=++-+-.
T Consensus 94 ~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~ 135 (428)
T PRK11637 94 TQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555566666666666666666666655555544433
No 45
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.11 E-value=0.1 Score=53.53 Aligned_cols=112 Identities=21% Similarity=0.250 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 001374 812 EELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVNLL 891 (1091)
Q Consensus 812 EqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selEeqLk~~~e~ledLesrL~eLeaElkeL 891 (1091)
..|+.+..++..+...+..++..+..+....+..|..|+..+..++..+..+++++......+.....+. ..+..+
T Consensus 3 ~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~----~~~E~l 78 (143)
T PF12718_consen 3 QALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRK----SNAEQL 78 (143)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH----HhHHHH
Confidence 3456666666666666655555555555555555555555555555544444444444444333333332 233478
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhh
Q 001374 892 RAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNE 927 (1091)
Q Consensus 892 qeKVesLE~ELe~ek~~~eEleaK~~eLEeQLe~~~ 927 (1091)
..+|..|+.+++.-...+.+...++.+.....+.+.
T Consensus 79 ~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~e 114 (143)
T PF12718_consen 79 NRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFE 114 (143)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 888888888888888888877777777776666554
No 46
>PRK09039 hypothetical protein; Validated
Probab=97.07 E-value=0.04 Score=63.74 Aligned_cols=67 Identities=18% Similarity=0.214 Sum_probs=59.3
Q ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 001374 804 CKFSLEEFEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCM 870 (1091)
Q Consensus 804 ~~~s~EelEqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selEeqLk~~ 870 (1091)
+-|+.+++...+.++..++.++..+.+-+..-......++..|.+++.++..++.....++..+...
T Consensus 41 q~fLs~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~ 107 (343)
T PRK09039 41 QFFLSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAEL 107 (343)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4577889999999999999999999999999999999999999999999999999888888876643
No 47
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.96 E-value=0.16 Score=62.84 Aligned_cols=73 Identities=21% Similarity=0.290 Sum_probs=29.9
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCC
Q 001374 236 LKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLVRKKLP 308 (1091)
Q Consensus 236 LkERIenlEKEne~LK~EL~~LqeELEiL~EElE~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l~rk~lp 308 (1091)
++++..+++.+...|...++.+..++....-.+-..+..++...++..-....+..|.+.+++++.++.+-.|
T Consensus 435 ~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~ 507 (1118)
T KOG1029|consen 435 LNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAP 507 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3333333333333333333333333333333333333344444444444444444444444444444444333
No 48
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=96.92 E-value=0.14 Score=54.66 Aligned_cols=169 Identities=17% Similarity=0.246 Sum_probs=123.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 001374 810 EFEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVN 889 (1091)
Q Consensus 810 elEqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selEeqLk~~~e~ledLesrL~eLeaElk 889 (1091)
++..+.-.+..++.++...++++......|.++++.-.+-......+.......++..+.+..++++..-..........
T Consensus 5 ~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~e 84 (205)
T KOG1003|consen 5 DVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYE 84 (205)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777888888888888888888888777766666666666555555666666666666666666666667788
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhcc-cchhHhh---hhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001374 890 LLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNENCAVC-SSEADEN---KIKQDRDLAAAAERLAECQETILLLG 965 (1091)
Q Consensus 890 eLqeKVesLE~ELe~ek~~~eEleaK~~eLEeQLe~~~~~~lk-~q~dkdL---KikqEkEIaaAeeKLAEcQeTI~sLE 965 (1091)
+.-.++.-++.+|+......+-.+.+|.+|.+++.-++.+... ...+..+ ....+..|..+..||-+........+
T Consensus 85 EVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aE 164 (205)
T KOG1003|consen 85 EVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAE 164 (205)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 8888899999999999999999999999999999988764333 1111111 34456778888888888777777777
Q ss_pred HHHHhhcCCCccc
Q 001374 966 KQLKSLRPQSEVI 978 (1091)
Q Consensus 966 KQLKsLa~q~e~~ 978 (1091)
+....|..+.|-|
T Consensus 165 RsVakLeke~Ddl 177 (205)
T KOG1003|consen 165 RRVAKLEKERDDL 177 (205)
T ss_pred HHHHHHcccHHHH
Confidence 8888777765543
No 49
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=96.92 E-value=0.24 Score=53.00 Aligned_cols=164 Identities=18% Similarity=0.144 Sum_probs=105.6
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHH
Q 001374 806 FSLEEFEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEV---KAQLASAQKSNSLAETQLKCMAESYRSLETHAQ 882 (1091)
Q Consensus 806 ~s~EelEqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeEL---esQLesLqeS~selEeqLk~~~e~ledLesrL~ 882 (1091)
.+.++..+++..+..++..=..+...+..++.+++.+.+.+... +.+++.++.....+|++-..+-.+.+.++..-.
T Consensus 19 ~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q 98 (193)
T PF14662_consen 19 KLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQ 98 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666555566666666666666665555444 666666666666677777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhcccchhHhh--hhh----hHHHHHHHHHHHHH
Q 001374 883 ELEAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNENCAVCSSEADEN--KIK----QDRDLAAAAERLAE 956 (1091)
Q Consensus 883 eLeaElkeLqeKVesLE~ELe~ek~~~eEleaK~~eLEeQLe~~~~~~lk~q~dkdL--Kik----qEkEIaaAeeKLAE 956 (1091)
.+.+++..|++.-..+..+.+.++....++..+...|+-|+-.+..- ..+.+..+ +.. ...-|.....-..+
T Consensus 99 ~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l--~~~~da~l~e~t~~i~eL~~~ieEy~~~tee 176 (193)
T PF14662_consen 99 SLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESL--ICQRDAILSERTQQIEELKKTIEEYRSITEE 176 (193)
T ss_pred HHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHH--HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 77788888888888888888888888888888888888888666641 11111122 111 12233344444567
Q ss_pred HHHHHHHHHHHHHhh
Q 001374 957 CQETILLLGKQLKSL 971 (1091)
Q Consensus 957 cQeTI~sLEKQLKsL 971 (1091)
+|-.|..|+.||..+
T Consensus 177 LR~e~s~LEeql~q~ 191 (193)
T PF14662_consen 177 LRLEKSRLEEQLSQM 191 (193)
T ss_pred HHHHHHHHHHHHHhh
Confidence 777777888777543
No 50
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=96.88 E-value=2.9 Score=54.87 Aligned_cols=38 Identities=16% Similarity=0.217 Sum_probs=20.3
Q ss_pred hHHHHhhhhhhHHHHHhhhhHHHHHHHHHHHhhhHHHH
Q 001374 129 HLESVTLSKLTAEDRAAHLDGALKECMRQIRNLKEEHE 166 (1091)
Q Consensus 129 ~Le~~~~q~~~le~rv~hLd~aLKec~~qLr~~reeqe 166 (1091)
+..-+++.....++++++.++-++.--+++|+.+++-+
T Consensus 488 q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele 525 (1317)
T KOG0612|consen 488 QKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELE 525 (1317)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555555555555443
No 51
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.87 E-value=0.82 Score=52.59 Aligned_cols=170 Identities=22% Similarity=0.279 Sum_probs=119.2
Q ss_pred HHHHHHH-HHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 149 GALKECM-RQIRNLKEEHEQKLQDFVLTKTKQWDKIRLEFEAKI-ANFEQELLRSAAENATLSRSLQERSNMLIKISEEK 226 (1091)
Q Consensus 149 ~aLKec~-~qLr~~reeqeqki~~~~~~~~~e~e~~~~ELEaKL-aElEkeLeelkaEl~aLeeqLEelqeeI~EL~eei 226 (1091)
...|.-| .|++.++.=-+ ...+..|=.-|..+...+ ..+...+..++.+...+...++.+...+-.+....
T Consensus 114 ~d~r~~m~~q~~~vK~~aR-------l~aK~~WYeWR~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~ 186 (325)
T PF08317_consen 114 PDMRLLMDNQFQLVKTYAR-------LEAKKMWYEWRMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERK 186 (325)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444 56666655443 344555666565555444 34466777777777777777777777777777777
Q ss_pred HHHHHHHHHHHhhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001374 227 SQAEAEIELLKGNIEQCE----REINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGL 302 (1091)
Q Consensus 227 ErlEgEi~LLkERIenlE----KEne~LK~EL~~LqeELEiL~EElE~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l 302 (1091)
+.+..++..+++.....+ .+...++.+|..+..+++.+..++..++..+..+.....++..++.++.+++..+...
T Consensus 187 ~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~ 266 (325)
T PF08317_consen 187 AELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKI 266 (325)
T ss_pred HHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777665443 4667778888888888887777777887777888888888888888888887777766
Q ss_pred hh-ccCCChHHHHHHHHHHhhhcC
Q 001374 303 VR-KKLPGPAALAQMKMEVESLGR 325 (1091)
Q Consensus 303 ~r-k~lpgpaa~a~mk~ev~~l~~ 325 (1091)
+. .+.....-+..+|.+|+.|-+
T Consensus 267 ~~~~r~~t~~Ev~~Lk~~~~~Le~ 290 (325)
T PF08317_consen 267 REECRGWTRSEVKRLKAKVDALEK 290 (325)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHH
Confidence 63 455667788999999998765
No 52
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=96.84 E-value=2 Score=52.58 Aligned_cols=219 Identities=19% Similarity=0.222 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcchhhHHHHh---hHHHHHHHhhhhHHHHHHHHHHHHhHHHHhhhhhhHHHHHhhhhH
Q 001374 73 QVQTMEEQIKELNEKLSAANSEISAKEDLVKQ---HTKVAEEAVSGWEKAEAEALALKNHLESVTLSKLTAEDRAAHLDG 149 (1091)
Q Consensus 73 ~~~~~~~~~k~l~ekls~a~~~~~~kd~lvkq---h~kvaeeav~gwekae~e~~~lK~~Le~~~~q~~~le~rv~hLd~ 149 (1091)
+...+..++..+.+.|..+-. +|-..++. --+++++.-..-+++..+...-.+..+.+..+...++.-+++...
T Consensus 35 eL~~~qeel~~~k~~l~~~E~---~k~~~l~ELe~akr~veel~~kLe~~~~~~~~a~~~~e~~k~r~~e~e~~~~~~~~ 111 (522)
T PF05701_consen 35 ELEKAQEELAKLKEQLEAAER---EKAQALSELESAKRTVEELKLKLEKAQAEEKQAEEDSELAKFRAKELEQGIAEEAS 111 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHhhhhcccch
Confidence 344567777777777766543 23333332 445666666667776666665566666666665555554444322
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 150 ALKECMRQIRNLKEEHEQKLQDFVLTKTKQWDKIRLEFEAKIANFEQ---ELLRSAAENATLSRSLQERSNMLIKISEEK 226 (1091)
Q Consensus 150 aLKec~~qLr~~reeqeqki~~~~~~~~~e~e~~~~ELEaKLaElEk---eLeelkaEl~aLeeqLEelqeeI~EL~eei 226 (1091)
.. .-++|..+|+.+..-+.+. ..-++|.+++|.++..-+..... +.+............++.+..+|..+++.+
T Consensus 112 ~~--~k~ele~~~~q~~~~~~eL-~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l 188 (522)
T PF05701_consen 112 VA--WKAELESAREQYASAVAEL-DSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIALKESL 188 (522)
T ss_pred HH--HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 3466777887777655554 66678888888887776644422 222223333333344444444444444444
Q ss_pred HHHHHHHHHH-HhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001374 227 SQAEAEIELL-KGNIEQ---CEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRG 301 (1091)
Q Consensus 227 ErlEgEi~LL-kERIen---lEKEne~LK~EL~~LqeELEiL~EElE~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~ 301 (1091)
........-. .+++.. .+.....++.++....++++.+..++.. +..+..++......+..|..++.....
T Consensus 189 ~~~~~a~~eAeee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~~~----~k~Le~kL~~a~~~l~~Lq~El~~~~~ 263 (522)
T PF05701_consen 189 ESAKLAHIEAEEERIEIAAEREQDAEEWEKELEEAEEELEELKEELEA----AKDLESKLAEASAELESLQAELEAAKE 263 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4322211111 111111 1233344445555555555555555522 244444555555555555555544443
No 53
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.83 E-value=0.39 Score=58.29 Aligned_cols=129 Identities=19% Similarity=0.219 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------hHHHHHHHH
Q 001374 184 RLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKG----------------NIEQCEREI 247 (1091)
Q Consensus 184 ~~ELEaKLaElEkeLeelkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkE----------------RIenlEKEn 247 (1091)
...++.++..++.++..++.........+..++..+..+...+...++.+..++. ++..+..++
T Consensus 229 ~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~~~~~~~Cp~C~~~~~~~~~~~~~l~d~i 308 (562)
T PHA02562 229 AKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCTQQISEGPDRITKIKDKL 308 (562)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcCCCcHHHHHHHHHHH
Confidence 3445555555555555555555555566666666666666666666666665532 334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHhhhcCC
Q 001374 248 NSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLVRKKLPGPAALAQMKMEVESLGRD 326 (1091)
Q Consensus 248 e~LK~EL~~LqeELEiL~EElE~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l~rk~lpgpaa~a~mk~ev~~l~~~ 326 (1091)
..|+.++..+...+..+.... +.+..+...+.++...+......+.. ++++ ....+.||+.|...
T Consensus 309 ~~l~~~l~~l~~~i~~~~~~~----~~~~~~~~~i~el~~~i~~~~~~i~~---~~~~-------~~~l~~ei~~l~~~ 373 (562)
T PHA02562 309 KELQHSLEKLDTAIDELEEIM----DEFNEQSKKLLELKNKISTNKQSLIT---LVDK-------AKKVKAAIEELQAE 373 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH-------HHHHHHHHHHHHhh
Confidence 444444444444333222222 22233344444444444444333322 2222 24677888887754
No 54
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.78 E-value=0.18 Score=55.69 Aligned_cols=48 Identities=27% Similarity=0.424 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhh
Q 001374 880 HAQELEAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNE 927 (1091)
Q Consensus 880 rL~eLeaElkeLqeKVesLE~ELe~ek~~~eEleaK~~eLEeQLe~~~ 927 (1091)
++..|..++..+..+..+|+.++..+......+...+..++.++.+..
T Consensus 90 e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e 137 (239)
T COG1579 90 ELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLE 137 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666666666665555555555555555555444
No 55
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.76 E-value=4.4 Score=55.35 Aligned_cols=195 Identities=9% Similarity=0.061 Sum_probs=89.0
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhHHHHhhhhhhHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHH-HHHHHHhhhHHHHHH
Q 001374 107 KVAEEAVSGWEKAEAEALALKNHLESVTLSKLTAEDRAAHLDGALKECMRQIRNLKEEHEQKLQ-DFVLTKTKQWDKIRL 185 (1091)
Q Consensus 107 kvaeeav~gwekae~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLKec~~qLr~~reeqeqki~-~~~~~~~~e~e~~~~ 185 (1091)
.+-||| +|+. .+....++.|+.+......+++.+.+|+.-|+.--+|+..+++-++..-. .....+...+...-.
T Consensus 283 ~liEEA-ag~r---~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~Le 358 (1486)
T PRK04863 283 VHLEEA-LELR---RELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLE 358 (1486)
T ss_pred HHHHHH-HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344554 4544 33333444555555555555555555555555544444444443332111 000122222222233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH----------HH
Q 001374 186 EFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYE----------LH 255 (1091)
Q Consensus 186 ELEaKLaElEkeLeelkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIenlEKEne~LK~E----------L~ 255 (1091)
+++.++.+....+...+.++..+...+..+...+..+..++..+...+..++.++......+..+..- ..
T Consensus 359 ELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~~SdE 438 (1486)
T PRK04863 359 ELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTAD 438 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHH
Confidence 34444444444444444444444444444444444444444444444444444444444444333221 12
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 001374 256 IVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLVRK 305 (1091)
Q Consensus 256 ~LqeELEiL~EElE~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l~rk 305 (1091)
.++..++............+..+..++..+...+..++.....+....-+
T Consensus 439 eLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gk 488 (1486)
T PRK04863 439 NAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGE 488 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 23334444455555555555555556666666666666666555555555
No 56
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.71 E-value=1.6 Score=49.39 Aligned_cols=60 Identities=20% Similarity=0.272 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcchhhHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhHHHH
Q 001374 74 VQTMEEQIKELNEKLSAANSEISAKEDLVKQHTKVAEEAVSGWEKAEAEALALKNHLESV 133 (1091)
Q Consensus 74 ~~~~~~~~k~l~ekls~a~~~~~~kd~lvkqh~kvaeeav~gwekae~e~~~lK~~Le~~ 133 (1091)
...+...+..+..|+......+..=+.-+..-.|..+++...--..++++.+|+.+|+-.
T Consensus 77 ~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl 136 (312)
T PF00038_consen 77 IDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFL 136 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHH
Confidence 344556666666666666655544344444445667777777677777777777777654
No 57
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=96.70 E-value=3 Score=52.45 Aligned_cols=51 Identities=24% Similarity=0.347 Sum_probs=31.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHhhhhhH-----------------HHHHHHHHHhhhhHHHHHHHHhhhc
Q 001374 365 LTERLLAMEEETKMLKEALAKRNSEL-----------------QASRNLCAKTASKLQSLEAQMQTST 415 (1091)
Q Consensus 365 l~~rl~~~eee~k~lke~l~~k~~el-----------------q~sr~~~a~t~~kl~~~e~q~~~~~ 415 (1091)
+.+.+..+|+|-..|++..+++.-.+ .++.|-++++.-||-.+-.++..+.
T Consensus 370 i~e~k~nve~elqsL~~l~aerqeQidelKn~if~~e~~~~dhe~~kneL~~a~ekld~mgthl~mad 437 (1265)
T KOG0976|consen 370 IQEKKENVEEELQSLLELQAERQEQIDELKNHIFRLEQGKKDHEAAKNELQEALEKLDLMGTHLSMAD 437 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 55666666666666666666554332 2344556777777777777666554
No 58
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=96.67 E-value=2.3 Score=52.57 Aligned_cols=144 Identities=20% Similarity=0.256 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 001374 182 KIRLEFEAKIANFEQELLRSAAENATLSRSLQE---RSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVS 258 (1091)
Q Consensus 182 ~~~~ELEaKLaElEkeLeelkaEl~aLeeqLEe---lqeeI~EL~eeiErlEgEi~LLkERIenlEKEne~LK~EL~~Lq 258 (1091)
+....+...+..+..+...+..++..+.....- --..+..+..++..+......+..++.....--..+...+..+.
T Consensus 306 ~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~ 385 (560)
T PF06160_consen 306 KNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIE 385 (560)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHH
Confidence 333344444444444444444444444444311 12234556667777777788888888888888888999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hccCCC-hHHHH----HHHHHHhhhcC
Q 001374 259 KELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLV-RKKLPG-PAALA----QMKMEVESLGR 325 (1091)
Q Consensus 259 eELEiL~EElE~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l~-rk~lpg-paa~a----~mk~ev~~l~~ 325 (1091)
+.+..+..+.......+..+.+......+++.++...+...+-.| +..||| |.-.- ...++|+.+..
T Consensus 386 ~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~nLPGlp~~y~~~~~~~~~~i~~l~~ 458 (560)
T PF06160_consen 386 EQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKSNLPGLPEDYLDYFFDVSDEIEELSD 458 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998877666 567999 66543 34555665554
No 59
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=96.66 E-value=0.32 Score=60.20 Aligned_cols=51 Identities=22% Similarity=0.259 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHHHhHHHHhhhhhhHHHHHhhhhHHHHHHHHHHHhhhHHHH
Q 001374 116 WEKAEAEALALKNHLESVTLSKLTAEDRAAHLDGALKECMRQIRNLKEEHE 166 (1091)
Q Consensus 116 wekae~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLKec~~qLr~~reeqe 166 (1091)
++..+.|+.+|+.+|+++..+...+++-+..|...++.-..++...+.+.+
T Consensus 323 ~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~ 373 (594)
T PF05667_consen 323 QEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENE 373 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556678888888888888877777777777777777666666655554444
No 60
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.66 E-value=0.35 Score=49.57 Aligned_cols=63 Identities=19% Similarity=0.232 Sum_probs=32.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 236 LKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQR 298 (1091)
Q Consensus 236 LkERIenlEKEne~LK~EL~~LqeELEiL~EElE~s~qsaeal~KQ~lEl~KKLaKLEaEcqr 298 (1091)
+.-||..++.+.......+....+.+......-+...+.+..+..+......++..++..+..
T Consensus 78 l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~~ 140 (143)
T PF12718_consen 78 LNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYKE 140 (143)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 444444444444444444455555555555555555555555555555555555555554443
No 61
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.65 E-value=1.3 Score=55.27 Aligned_cols=56 Identities=25% Similarity=0.223 Sum_probs=47.1
Q ss_pred hhhhhhHHHHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHh
Q 001374 357 KFQKENEFLTERLLAMEEETKMLKEALAKRNSELQASRNLCAKTASKLQSLEAQMQ 412 (1091)
Q Consensus 357 ~~~~~~~~l~~rl~~~eee~k~lke~l~~k~~elq~sr~~~a~t~~kl~~~e~q~~ 412 (1091)
.-++-+.-|+++|..++++...||+.|.-|+.|++..+.......+.|.+..+.-.
T Consensus 192 ~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqqy~a~~q 247 (617)
T PF15070_consen 192 SEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQYVAAYQ 247 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555899999999999999999999999999999988888888888776544
No 62
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=96.64 E-value=2.1 Score=52.74 Aligned_cols=189 Identities=15% Similarity=0.111 Sum_probs=103.1
Q ss_pred HHHHHHHHhHHHHhhhhhhHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHHH-------HHHHhhhHHHHHHHHHHHHHH
Q 001374 121 AEALALKNHLESVTLSKLTAEDRAAHLDGALKECMRQIRNLKEEHEQKLQDF-------VLTKTKQWDKIRLEFEAKIAN 193 (1091)
Q Consensus 121 ~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLKec~~qLr~~reeqeqki~~~-------~~~~~~e~e~~~~ELEaKLaE 193 (1091)
+|+.-.=..|+++++....||.++.+|-+.|...---.+..+-+--.....+ +..-+.+.+.++..+...++.
T Consensus 235 aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~ 314 (629)
T KOG0963|consen 235 AEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREK 314 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777889999999999999999999998876544444411111111111 122222333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-------------------HHHHHHHHHHHH
Q 001374 194 FEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQ-------------------CEREINSAKYEL 254 (1091)
Q Consensus 194 lEkeLeelkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIen-------------------lEKEne~LK~EL 254 (1091)
...++..+..++.+....++++.+.+... ...+.+..++.+|++ +++ +-..+..|+.+.
T Consensus 315 ~~~qI~~le~~l~~~~~~leel~~kL~~~-sDYeeIK~ELsiLk~-ief~~se~a~~~~~~~~~leslLl~knr~lq~e~ 392 (629)
T KOG0963|consen 315 HKAQISALEKELKAKISELEELKEKLNSR-SDYEEIKKELSILKA-IEFGDSEEANDEDETAKTLESLLLEKNRKLQNEN 392 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccHHHHHHHHHHHHH-hhcCCcccccccccccchHHHHHHHHHhhhhHHH
Confidence 33333333333333333333332222211 233445555555543 111 123344555555
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCChHHH
Q 001374 255 HIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLVRKKLPGPAAL 313 (1091)
Q Consensus 255 ~~LqeELEiL~EElE~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l~rk~lpgpaa~ 313 (1091)
..+.........++.....+.+.+..+..+...-++++|..+..... +...|||.+.
T Consensus 393 a~Lr~~n~~~~~~~~~~~~~~~el~~~~~~~ke~i~klE~dl~~~~~--~~~~~~~~~~ 449 (629)
T KOG0963|consen 393 ASLRVANSGLSGRITELSKKGEELEAKATEQKELIAKLEQDLLKVQV--SPPAEGATAR 449 (629)
T ss_pred HHHhccccccchhHHHHHhhhhhhHHHHHHHHHHHHHHHhhHhhccc--CCCCCcchhh
Confidence 55555555555666777777777777777777778888888877776 5677777653
No 63
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=96.58 E-value=0.76 Score=51.42 Aligned_cols=159 Identities=18% Similarity=0.261 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 001374 808 LEEFEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAE 887 (1091)
Q Consensus 808 ~EelEqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selEeqLk~~~e~ledLesrL~eLeaE 887 (1091)
+..|..|+..++.+..+-..-+=+++.+...|+...++.++-+.+...++..+.-+-+....+.. .-..+..+
T Consensus 17 LqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek-------~rqKlshd 89 (307)
T PF10481_consen 17 LQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEK-------TRQKLSHD 89 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHH-------HHHHhhHH
Confidence 45788999999999999999999999999999999999999999888888855554444444433 33334444
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhh------hhc--c--cchhHhh-----hhhhHHHHHHHHH
Q 001374 888 VNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNEN------CAV--C--SSEADEN-----KIKQDRDLAAAAE 952 (1091)
Q Consensus 888 lkeLqeKVesLE~ELe~ek~~~eEleaK~~eLEeQLe~~~~------~~l--k--~q~dkdL-----KikqEkEIaaAee 952 (1091)
+......|..|+..+..-+.+++.+...+..++.+|++... ..+ + .+..... .......+..+.+
T Consensus 90 lq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~~~~sl~~~stpqk~f~~p~tp~q~~~~sk~e~L~e 169 (307)
T PF10481_consen 90 LQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAASSGDVSLNPCSTPQKSFATPLTPSQYYSDSKYEELQE 169 (307)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCchhhccCCCChhhhhhhhhHHHHHH
Confidence 44444555556666666666666666677777777776432 000 0 1111000 1223445667778
Q ss_pred HHHHHHHHHHHHHHHHHhhcC
Q 001374 953 RLAECQETILLLGKQLKSLRP 973 (1091)
Q Consensus 953 KLAEcQeTI~sLEKQLKsLa~ 973 (1091)
||..-=+.-..|+-.++.|.-
T Consensus 170 kynkeveerkrle~e~k~lq~ 190 (307)
T PF10481_consen 170 KYNKEVEERKRLEAEVKALQA 190 (307)
T ss_pred HHHHHHHHHhhHHHHHHHHhc
Confidence 888877888899999999874
No 64
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=96.57 E-value=3.8 Score=53.39 Aligned_cols=115 Identities=10% Similarity=0.155 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001374 198 LLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEA 277 (1091)
Q Consensus 198 LeelkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIenlEKEne~LK~EL~~LqeELEiL~EElE~s~qsaea 277 (1091)
|+....-....+..++.....|....+.+.+++.+....+....+..+.+..|...+..++-+......+-....+.+..
T Consensus 1572 L~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~s 1651 (1758)
T KOG0994|consen 1572 LEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGS 1651 (1758)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 33333333344444444445555555555555555555555555555555555555555555555555566666777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhccCCChHH
Q 001374 278 ANKQHMEGVKKIAKLEAECQRLRGLVRKKLPGPAA 312 (1091)
Q Consensus 278 l~KQ~lEl~KKLaKLEaEcqrLr~l~rk~lpgpaa 312 (1091)
+..+.....+.+..|.........|+-||.-|-.|
T Consensus 1652 a~~~A~~a~q~~~~lq~~~~~~~~l~~~r~~g~~~ 1686 (1758)
T KOG0994|consen 1652 AKEQALSAEQGLEILQKYYELVDRLLEKRMEGSQA 1686 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Confidence 88888888888888888999999999888777544
No 65
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.56 E-value=3.1 Score=50.92 Aligned_cols=283 Identities=20% Similarity=0.241 Sum_probs=140.7
Q ss_pred HHHHhhHHHHHHHhhhhHHHHHHHHHHHHhHHHH----hhhhhhHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 001374 100 DLVKQHTKVAEEAVSGWEKAEAEALALKNHLESV----TLSKLTAEDRAAHLDGALKECMRQIRNLKEEHEQKLQDFVLT 175 (1091)
Q Consensus 100 ~lvkqh~kvaeeav~gwekae~e~~~lK~~Le~~----~~q~~~le~rv~hLd~aLKec~~qLr~~reeqeqki~~~~~~ 175 (1091)
+|+++|.++.+--..--+++|-.+.. |--+|-+ ..=....++ .+.|+.-||-..++.-... ..
T Consensus 169 dlI~~~t~~v~~~~l~q~~~ed~~m~-k~f~dy~~~~Y~~fl~g~d~-~~~~~~Elk~~l~~~~~~i-----------~~ 235 (581)
T KOG0995|consen 169 DLIRINTALVEDSPLEQEEAEDKTMN-KLFFDYTIRSYTSFLKGEDN-SSELEDELKHRLEKYFTSI-----------AN 235 (581)
T ss_pred HHHHHhHHHhhccchhccchHHHHHH-HHHHHHHHHHHHHHhccCcc-cchHHHHHHHHHHHHHHHH-----------HH
Confidence 89999999988765533556666666 5543333 333333333 7777777776665554421 22
Q ss_pred HhhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 001374 176 KTKQWDKIRLEFEAKIANF---EQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKY 252 (1091)
Q Consensus 176 ~~~e~e~~~~ELEaKLaEl---EkeLeelkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIenlEKEne~LK~ 252 (1091)
+..-.++.-.+++++|.+. ..+.+.++.....+...+...+.-...+.......++.++-++..++-.+.+++.|+.
T Consensus 236 ~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~ 315 (581)
T KOG0995|consen 236 EIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQK 315 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222333333333333 1233333444444444444444444444444444444444444444444444433333
Q ss_pred HHHHHHH----------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHhhhhhccCCChH
Q 001374 253 ELHIVSK----------ELEIRNEEKNMSMRSAEAANKQHMEGVKKI-----------AKLEAECQRLRGLVRKKLPGPA 311 (1091)
Q Consensus 253 EL~~Lqe----------ELEiL~EElE~s~qsaeal~KQ~lEl~KKL-----------aKLEaEcqrLr~l~rk~lpgpa 311 (1091)
+...|.. +.+..+.+++.+.+.+..+..+...+.+++ ..++..+..+..++|+=.-| +
T Consensus 316 ~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l~~~i~l~-~ 394 (581)
T KOG0995|consen 316 ENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFIDLNSLIRRIKLG-I 394 (581)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 3333333 333344444444444444444444443333 33333444444555443322 1
Q ss_pred HHHHHHHHHhhhcCCcCCccccCCCCCCCCCCCCCCcccchhhhHhhhhhhHHHHHHHHhHHHHHHHHHHHHHhhhhhHH
Q 001374 312 ALAQMKMEVESLGRDYGDSRLKRSPVKPTSPHLSPVSEFSLDNVQKFQKENEFLTERLLAMEEETKMLKEALAKRNSELQ 391 (1091)
Q Consensus 312 a~a~mk~ev~~l~~~~~~~r~rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~rl~~~eee~k~lke~l~~k~~elq 391 (1091)
|-- -++ + .|.|-+++.- ..+....--.-.....+-..++|..-+.+.-+|-+.+..+++-+-
T Consensus 395 ~~~-~~n----~---------~~~pe~~~~~----~~d~k~~V~~~l~el~~ei~~~~~~~~~~~~tLq~~~~~~~~~i~ 456 (581)
T KOG0995|consen 395 AEN-SKN----L---------ERNPERAATN----GVDLKSYVKPLLKELLDEISEELHEAENELETLQEHFSNKASTIE 456 (581)
T ss_pred HHH-hcc----C---------CcCCccCccc----cccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 110 000 1 1222222110 011000000012233455778899999999999999999999888
Q ss_pred HHHHHHHHhhhhHHHHHHHHhhh
Q 001374 392 ASRNLCAKTASKLQSLEAQMQTS 414 (1091)
Q Consensus 392 ~sr~~~a~t~~kl~~~e~q~~~~ 414 (1091)
..+.....+-++|..+++.....
T Consensus 457 E~~~~l~~~~~el~~~~~~~~~~ 479 (581)
T KOG0995|consen 457 EKIQILGEIELELKKAESKYELK 479 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888877754
No 66
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.56 E-value=0.3 Score=54.10 Aligned_cols=49 Identities=20% Similarity=0.294 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 810 EFEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQK 858 (1091)
Q Consensus 810 elEqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqe 858 (1091)
.|.+++.+++.+...+...+..++.+..++..++..|.++..++..++.
T Consensus 32 ~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~ 80 (239)
T COG1579 32 ALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEE 80 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444444333
No 67
>PRK09039 hypothetical protein; Validated
Probab=96.55 E-value=0.18 Score=58.38 Aligned_cols=120 Identities=17% Similarity=0.149 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHH
Q 001374 808 LEEFEELKLEKDNLATDLARCTENLEMTKSQL-------YETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETH 880 (1091)
Q Consensus 808 ~EelEqLEsEkeelE~eLee~~eklEel~~qL-------qelE~~LeELesQLesLqeS~selEeqLk~~~e~ledLesr 880 (1091)
.+++..++.++..+-..+..-+.....+...+ ..++...+.|+..++........++.++..+...+......
T Consensus 52 ~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~ 131 (343)
T PRK09039 52 DSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQV 131 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHH
Confidence 45677777777776654443333333333333 33333333333333322222334444455444445455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhh
Q 001374 881 AQELEAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNE 927 (1091)
Q Consensus 881 L~eLeaElkeLqeKVesLE~ELe~ek~~~eEleaK~~eLEeQLe~~~ 927 (1091)
+.+...++..|+..|.+|+..+..+...+...+.+..+.+.+|..++
T Consensus 132 ~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~ 178 (343)
T PRK09039 132 SARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLG 178 (343)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555544444444433
No 68
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=96.54 E-value=0.33 Score=60.06 Aligned_cols=163 Identities=23% Similarity=0.228 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH----------HHHHHHHHHHhHHHHH
Q 001374 809 EEFEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSL----------AETQLKCMAESYRSLE 878 (1091)
Q Consensus 809 EelEqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~se----------lEeqLk~~~e~ledLe 878 (1091)
.+++.|+.++..+...+..+...++.+...+..+...+.+.+.....++..+.. .+..+..+......-.
T Consensus 328 ~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~~s~ 407 (594)
T PF05667_consen 328 QELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVEASE 407 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 456666666666666666666666666666666655555555555555443332 2333433333333333
Q ss_pred HHHHHHH-----------HHHHHH--------------HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhccc
Q 001374 879 THAQELE-----------AEVNLL--------------RAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNENCAVCS 933 (1091)
Q Consensus 879 srL~eLe-----------aElkeL--------------qeKVesLE~ELe~ek~~~eEleaK~~eLEeQLe~~~~~~lk~ 933 (1091)
.++..+. .++.++ ..+|..+..++..+...+..-...+.+|..+++++.+.....
T Consensus 408 ~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs 487 (594)
T PF05667_consen 408 QRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRS 487 (594)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHH
Confidence 3333322 233333 333444444444444444444445555555555555421111
Q ss_pred ---chhHhh---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001374 934 ---SEADEN---KIKQDRDLAAAAERLAECQETILLLGKQLKSL 971 (1091)
Q Consensus 934 ---q~dkdL---KikqEkEIaaAeeKLAEcQeTI~sLEKQLKsL 971 (1091)
....++ --+|..+|...-......|++|+.+.-+|.+-
T Consensus 488 ~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~Rt 531 (594)
T PF05667_consen 488 AYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRT 531 (594)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 111111 23467799999999999999999999999754
No 69
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=96.52 E-value=4.7 Score=52.59 Aligned_cols=16 Identities=38% Similarity=0.607 Sum_probs=10.5
Q ss_pred hHHHHHHHHHHHHHHH
Q 001374 660 SQELVAAITQIHDFVL 675 (1091)
Q Consensus 660 ~~~l~~~~~~i~~~v~ 675 (1091)
..+|..-|.+|-+|+.
T Consensus 1470 ~~el~~Li~~v~~Flt 1485 (1758)
T KOG0994|consen 1470 NRELRNLIQQVRDFLT 1485 (1758)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3466677777777764
No 70
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=96.49 E-value=2.2 Score=52.79 Aligned_cols=15 Identities=13% Similarity=0.217 Sum_probs=8.3
Q ss_pred HHHHHHHHHhhhhhc
Q 001374 291 KLEAECQRLRGLVRK 305 (1091)
Q Consensus 291 KLEaEcqrLr~l~rk 305 (1091)
.+..++.++..-+..
T Consensus 452 ~~~~~i~~l~~~L~~ 466 (569)
T PRK04778 452 EVSDEIEALAEELEE 466 (569)
T ss_pred HHHHHHHHHHHHhcc
Confidence 345555666655555
No 71
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=96.49 E-value=3.4 Score=50.66 Aligned_cols=317 Identities=21% Similarity=0.235 Sum_probs=131.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcchhhHHHHhhHHHH---HHHhhhhHH----HHHHHHHHHHhHHHHhhhhhhHH---H
Q 001374 73 QVQTMEEQIKELNEKLSAANSEISAKEDLVKQHTKVA---EEAVSGWEK----AEAEALALKNHLESVTLSKLTAE---D 142 (1091)
Q Consensus 73 ~~~~~~~~~k~l~ekls~a~~~~~~kd~lvkqh~kva---eeav~gwek----ae~e~~~lK~~Le~~~~q~~~le---~ 142 (1091)
+++.|...|..|++=|-.+.+... .--++...++ +.-..-|++ ++.++..|+.+++.+..-..-|. .
T Consensus 173 kve~L~~Ei~~lke~l~~~~~a~~---eAeee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~~~~k~Le~kL~~a~~ 249 (522)
T PF05701_consen 173 KVEELSKEIIALKESLESAKLAHI---EAEEERIEIAAEREQDAEEWEKELEEAEEELEELKEELEAAKDLESKLAEASA 249 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555433321 1112222232 122335554 46677777777744443333222 3
Q ss_pred HHhhhhHHHHHHHH-HHHhh--hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHH
Q 001374 143 RAAHLDGALKECMR-QIRNL--KEEHEQKLQDFVLTKTKQWDKIRLEFEAKIANF----------EQELLRSAAENATLS 209 (1091)
Q Consensus 143 rv~hLd~aLKec~~-qLr~~--reeqeqki~~~~~~~~~e~e~~~~ELEaKLaEl----------EkeLeelkaEl~aLe 209 (1091)
-+.-|-.=|+.++. .+... .......++..+...+.+++..+..|+.-..++ ..+|...+.++..+.
T Consensus 250 ~l~~Lq~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lk 329 (522)
T PF05701_consen 250 ELESLQAELEAAKESKLEEEAEAKEKSSELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLK 329 (522)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333343333 11110 111223344456667777777777665433322 334444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 001374 210 RSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKI 289 (1091)
Q Consensus 210 eqLEelqeeI~EL~eeiErlEgEi~LLkERIenlEKEne~LK~EL~~LqeELEiL~EElE~s~qsaeal~KQ~lEl~KKL 289 (1091)
.........+..|..++.+...++......-.........+...|+.+..+.+....+....+..+..+..+.......+
T Consensus 330 e~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i 409 (522)
T PF05701_consen 330 EREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAI 409 (522)
T ss_pred HHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444333333333333333333333333333333333333333333333333333333
Q ss_pred HHHHHHHHHHhhhhhc-cCCChHHHHHHHHHHhhhcCCcCCccccCCCCCCCCCCCCCCcccchhhhHhhhhhhHHHHHH
Q 001374 290 AKLEAECQRLRGLVRK-KLPGPAALAQMKMEVESLGRDYGDSRLKRSPVKPTSPHLSPVSEFSLDNVQKFQKENEFLTER 368 (1091)
Q Consensus 290 aKLEaEcqrLr~l~rk-~lpgpaa~a~mk~ev~~l~~~~~~~r~rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r 368 (1091)
...+..|....-++-. +-.--.|+++||.=.++.. ..+-+++.+++ .|+ ....++..|..|
T Consensus 410 ~t~E~rL~aa~ke~eaaKasEa~Ala~ik~l~e~~~------~~~~~~~~~~~----~Vt--------ls~eEy~~L~~k 471 (522)
T PF05701_consen 410 KTAEERLEAALKEAEAAKASEALALAEIKALSESES------SSRASDSESSS----KVT--------LSLEEYESLSKK 471 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc------cccccccCCCC----Cee--------ecHHHHHHHHHH
Confidence 3333333222221110 1111235667776333211 11111111111 111 123367778888
Q ss_pred HHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHhh
Q 001374 369 LLAMEEETKMLKEALAKRNSELQASRNLCAKTASKLQSLEAQMQT 413 (1091)
Q Consensus 369 l~~~eee~k~lke~l~~k~~elq~sr~~~a~t~~kl~~~e~q~~~ 413 (1091)
-...|+-.++ =.+.-.+.++.++--=-+...||..+..++.+
T Consensus 472 a~e~ee~a~k---kva~A~aqve~ak~se~e~l~kle~~~~e~~~ 513 (522)
T PF05701_consen 472 AEEAEELAEK---KVAAAMAQVEAAKASEKEILEKLEEAMKEIEE 513 (522)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888775431 11222334444444444455566666555553
No 72
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=96.48 E-value=1.1 Score=56.81 Aligned_cols=28 Identities=32% Similarity=0.484 Sum_probs=15.8
Q ss_pred hHHHHHhhhhHHHHHHHHHHHhhhHHHH
Q 001374 139 TAEDRAAHLDGALKECMRQIRNLKEEHE 166 (1091)
Q Consensus 139 ~le~rv~hLd~aLKec~~qLr~~reeqe 166 (1091)
.++.++..|+++|-+--++....|+|++
T Consensus 362 q~~~ql~~le~~~~e~q~~~qe~~~e~e 389 (980)
T KOG0980|consen 362 QYENQLLALEGELQEQQREAQENREEQE 389 (980)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3455555556666555555555555555
No 73
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=96.47 E-value=0.3 Score=50.11 Aligned_cols=116 Identities=20% Similarity=0.169 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 001374 180 WDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSK 259 (1091)
Q Consensus 180 ~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIenlEKEne~LK~EL~~Lqe 259 (1091)
|++.......++...+.+-+.++.....+.+.++..+.....+....+.....+.-+++.+..+..+..+|..++..+..
T Consensus 1 de~K~l~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~s 80 (140)
T PF10473_consen 1 DEEKFLHVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRS 80 (140)
T ss_pred CcHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 260 ELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAE 295 (1091)
Q Consensus 260 ELEiL~EElE~s~qsaeal~KQ~lEl~KKLaKLEaE 295 (1091)
+.+.+..++...+..+..+.........-|..++++
T Consensus 81 Ek~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~e 116 (140)
T PF10473_consen 81 EKENLDKELQKKQEKVSELESLNSSLENLLQEKEQE 116 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 777777777777777777777666666666666666
No 74
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.42 E-value=0.78 Score=57.90 Aligned_cols=116 Identities=17% Similarity=0.147 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 187 FEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEE-KSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRN 265 (1091)
Q Consensus 187 LEaKLaElEkeLeelkaEl~aLeeqLEelqeeI~EL~ee-iErlEgEi~LLkERIenlEKEne~LK~EL~~LqeELEiL~ 265 (1091)
+..+..+++.++..++.++...++++..+..++.++..- ++ .+.+..+|..-+..++..+..|+.-|..-..=...+=
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e-~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLf 621 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKE-SEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLF 621 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 344445555555666666666655555555555444332 22 3445566666666666666666665554444333344
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001374 266 EEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLV 303 (1091)
Q Consensus 266 EElE~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l~ 303 (1091)
.-+-..+++++.++.++....++|..|.+.+..+-+++
T Consensus 622 saLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~av~ 659 (697)
T PF09726_consen 622 SALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLLAVM 659 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44455555556666666666666666666665555553
No 75
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.40 E-value=4.3 Score=50.83 Aligned_cols=78 Identities=15% Similarity=0.294 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001374 197 ELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRS 274 (1091)
Q Consensus 197 eLeelkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIenlEKEne~LK~EL~~LqeELEiL~EElE~s~qs 274 (1091)
.+.+.-.+|..|..+|.++++.++.++.+.-.+...+..-+....-+.+....|+..+..+...++....+...+...
T Consensus 154 t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q 231 (617)
T PF15070_consen 154 TASRALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQ 231 (617)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 344455667777777777777777777665544444444333334444444455555555555544444444444333
No 76
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=96.39 E-value=1.5 Score=47.12 Aligned_cols=157 Identities=17% Similarity=0.210 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHhHHHHhhhhhhHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 001374 118 KAEAEALALKNHLESVTLSKLTAEDRAAHLDGALKECMRQIRNLKEEHEQKLQDFVLTKTKQWDKIRLEFEAKIANFEQE 197 (1091)
Q Consensus 118 kae~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLKec~~qLr~~reeqeqki~~~~~~~~~e~e~~~~ELEaKLaElEke 197 (1091)
.||++|++++..+-.+....-..++|+.-+ .+...+..+.-.|.+.-+ -++...... ++.++..++.+
T Consensus 1 ~ae~~va~lnrri~~leeele~aqErl~~a----~~KL~Eaeq~~dE~er~~-Kv~enr~~k-------dEE~~e~~e~q 68 (205)
T KOG1003|consen 1 KAEADVAALNRRIQLLEEELDRAQERLATA----LQKLEEAEQAADESERGM-KVIENRAQK-------LEEKMEAQEAQ 68 (205)
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhcccHHHHHH-HHHHHHHHh-------hHHHHHHHHHH
Confidence 378899999888888877777777776543 333444445555544322 222222222 23333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001374 198 LLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEA 277 (1091)
Q Consensus 198 LeelkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIenlEKEne~LK~EL~~LqeELEiL~EElE~s~qsaea 277 (1091)
+......-+.....+.+....+.-+++++.-..+|.+..+..+..|.++++.+...+..+...-+...+..+.
T Consensus 69 -------LkEAk~iaE~adrK~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~ 141 (205)
T KOG1003|consen 69 -------LKEAKHIAEKADRKYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEK 141 (205)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHH
Confidence 2222333333334445555566667777777777777777777778888877777777777777766666677
Q ss_pred HHHHHHHHHHHHHHHH
Q 001374 278 ANKQHMEGVKKIAKLE 293 (1091)
Q Consensus 278 l~KQ~lEl~KKLaKLE 293 (1091)
...++..+..||...+
T Consensus 142 ~e~~ik~ltdKLkEaE 157 (205)
T KOG1003|consen 142 YEEELKELTDKLKEAE 157 (205)
T ss_pred HHHHHHHHHHHHhhhh
Confidence 7777666666665443
No 77
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=96.37 E-value=4.8 Score=51.03 Aligned_cols=283 Identities=20% Similarity=0.279 Sum_probs=135.1
Q ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhHHHHhhhhhhHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHHH---HHHHhhh
Q 001374 103 KQHTKVAEEAVSGWEKAEAEALALKNHLESVTLSKLTAEDRAAHLDGALKECMRQIRNLKEEHEQKLQDF---VLTKTKQ 179 (1091)
Q Consensus 103 kqh~kvaeeav~gwekae~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLKec~~qLr~~reeqeqki~~~---~~~~~~e 179 (1091)
..|-+||...+ ...-..|.....+-..+..||..|+.=||.+-.++..++.|.++ ++-. +.+....
T Consensus 5 ~~~~~~~~~g~----------~~Ee~Ll~esa~~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~r-l~~~~~~~~~~~~~ 73 (717)
T PF09730_consen 5 SNHKKVAKDGE----------EREESLLQESASKEAYLQQRILELENELKQLRQELSNVQAENER-LSQLNQELRKECED 73 (717)
T ss_pred hHHHHHHhcch----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 35666665432 23345667777777888999999999999999999999999984 3222 2222333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 001374 180 WDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSK 259 (1091)
Q Consensus 180 ~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIenlEKEne~LK~EL~~Lqe 259 (1091)
.|.-+..+...+.++..+-.++-.+. .++.++...|. -++.+|++ .+-+.+.++.+|..+.+
T Consensus 74 ~e~~~~~lr~e~ke~K~rE~rll~dy-------selEeENislQ-------Kqvs~Lk~----sQvefE~~Khei~rl~E 135 (717)
T PF09730_consen 74 LELERKRLREEIKEYKFREARLLQDY-------SELEEENISLQ-------KQVSVLKQ----SQVEFEGLKHEIKRLEE 135 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh-------HHHHHHHHHHH-------HHHHHHHH----hHHHHHHHHHHHHHHHH
Confidence 33333333333333333322222222 22222222222 22222221 11222344455555555
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hh-hccCCChHHHHHHHHHHhhhcC---------CcC
Q 001374 260 ELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRG-LV-RKKLPGPAALAQMKMEVESLGR---------DYG 328 (1091)
Q Consensus 260 ELEiL~EElE~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~-l~-rk~lpgpaa~a~mk~ev~~l~~---------~~~ 328 (1091)
+.+.++..++...+--+-+.+|+.+.-..|..-.+.-..|+- |- +...+.+.-+..|-..++.+.. ..+
T Consensus 136 e~~~l~~qlee~~rLk~iae~qleEALesl~~EReqk~~LrkEL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (717)
T PF09730_consen 136 EIELLNSQLEEAARLKEIAEKQLEEALESLKSEREQKNALRKELDQHLNIESISYLSNLAISLDGLKFSEDPRAATEPNN 215 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccchhhcccccccccccccccCCCC
Confidence 555555544444444444444444443333222111111110 00 0111111111122222222200 001
Q ss_pred C-----------ccccCCC-----CCC-CCCCCCCCcccchhhhH-hhhhhhHHHHHHHHhHHHHHHHHHHHHHhhhhhH
Q 001374 329 D-----------SRLKRSP-----VKP-TSPHLSPVSEFSLDNVQ-KFQKENEFLTERLLAMEEETKMLKEALAKRNSEL 390 (1091)
Q Consensus 329 ~-----------~r~rr~~-----~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~l~~rl~~~eee~k~lke~l~~k~~el 390 (1091)
| +..++.+ +.| .+-...|.|.-..|=+. -..-++.-|-.+|.-||-|...|...|-.-...|
T Consensus 216 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lv~DLfSEl~~~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qL 295 (717)
T PF09730_consen 216 DDEEENGGLNGGPGLAKGNGDNRMSTPRKSESFSPAPSLVSDLFSELNLSEIQKLKQQLLQVEREKSSLLSNLQESQKQL 295 (717)
T ss_pred chhhhcchhhccchhcccccccccCCCCCCCCCCCCCcccchhhhhcchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 1 0001000 011 00012232221223222 1234677789999999999999988887777777
Q ss_pred HHHHHHHHHhhhhHHHHHHHHhhh
Q 001374 391 QASRNLCAKTASKLQSLEAQMQTS 414 (1091)
Q Consensus 391 q~sr~~~a~t~~kl~~~e~q~~~~ 414 (1091)
..++..+..--.|+..|-.++.-+
T Consensus 296 e~a~~als~q~eki~~L~e~l~aL 319 (717)
T PF09730_consen 296 EHAQGALSEQQEKINRLTEQLDAL 319 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777776666677777776654
No 78
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=96.17 E-value=5.2 Score=49.44 Aligned_cols=50 Identities=26% Similarity=0.267 Sum_probs=38.3
Q ss_pred hhhhHHHHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHH
Q 001374 359 QKENEFLTERLLAMEEETKMLKEALAKRNSELQASRNLCAKTASKLQSLEA 409 (1091)
Q Consensus 359 ~~~~~~l~~rl~~~eee~k~lke~l~~k~~elq~sr~~~a~t~~kl~~~e~ 409 (1091)
.++.+-...++.++|-++++.+..|..--..|+ +|+-|=+-=..|+.|.+
T Consensus 309 ~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~-~~sDYeeIK~ELsiLk~ 358 (629)
T KOG0963|consen 309 VEEREKHKAQISALEKELKAKISELEELKEKLN-SRSDYEEIKKELSILKA 358 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhccHHHHHHHHHHHHH
Confidence 345667788899999999998888888888887 56778776666666654
No 79
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.17 E-value=1 Score=53.53 Aligned_cols=73 Identities=16% Similarity=0.216 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHH
Q 001374 809 EEFEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHA 881 (1091)
Q Consensus 809 EelEqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selEeqLk~~~e~ledLesrL 881 (1091)
..+.+++.++...+..+....++...+..+|..++..+..++.+|......+..++.+|..+...+..++.+-
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3566777777777777777777777777777777777777777766666655555555555555554444443
No 80
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=96.15 E-value=3 Score=48.80 Aligned_cols=42 Identities=17% Similarity=0.222 Sum_probs=20.9
Q ss_pred HHHHHHHHHhHHHHhhhhhhHHHHHhhhhHHHHHHHHHHHhh
Q 001374 120 EAEALALKNHLESVTLSKLTAEDRAAHLDGALKECMRQIRNL 161 (1091)
Q Consensus 120 e~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLKec~~qLr~~ 161 (1091)
|.|-..-...|+.+-+..-..+.+...+---+-...+.|+.+
T Consensus 101 e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~ 142 (499)
T COG4372 101 ETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARL 142 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555666666555555555544444444444444443
No 81
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.12 E-value=7 Score=50.47 Aligned_cols=216 Identities=19% Similarity=0.208 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcchhhHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhHHHHhhh--------------hhh
Q 001374 74 VQTMEEQIKELNEKLSAANSEISAKEDLVKQHTKVAEEAVSGWEKAEAEALALKNHLESVTLS--------------KLT 139 (1091)
Q Consensus 74 ~~~~~~~~k~l~ekls~a~~~~~~kd~lvkqh~kvaeeav~gwekae~e~~~lK~~Le~~~~q--------------~~~ 139 (1091)
-+.++.-|+-++|||..-- ..|++|-+-|..=-+.-..-+-=-+.|+-....+|+.+..+ .-.
T Consensus 186 ~ekI~ell~yieerLreLE---eEKeeL~~Yqkldk~rr~lEYtiYdrEl~E~~~~l~~le~~r~~~~e~s~~~~~~~~~ 262 (1200)
T KOG0964|consen 186 REKINELLKYIEERLRELE---EEKEELEKYQKLDKERRSLEYTIYDRELNEINGELERLEEDRSSAPEESEQYIDALDK 262 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHhHhhhhhhhhhhHHHHHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 3445666677777765422 45777766553211111100000022333333333333222 222
Q ss_pred HHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 140 AEDRAAHLDGALKECMRQIRNLKEEHEQKLQDFVLTKTKQWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNML 219 (1091)
Q Consensus 140 le~rv~hLd~aLKec~~qLr~~reeqeqki~~~~~~~~~e~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLEelqeeI 219 (1091)
.+|+...++.-+++----|+.+++|-+|--.+- .+.-+.+..|+-++..++.++.......+.....++.....|
T Consensus 263 ~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~-----t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki 337 (1200)
T KOG0964|consen 263 VEDESEDLKCEIKELENKLTNLREEKEQLKARE-----TKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKI 337 (1200)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHH
Confidence 566777777788888888888888766522221 111223455666666666666665555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 001374 220 IKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIV-------------SKELEIRNEEKNMSMRSAEAANKQHMEGV 286 (1091)
Q Consensus 220 ~EL~eeiErlEgEi~LLkERIenlEKEne~LK~EL~~L-------------qeELEiL~EElE~s~qsaeal~KQ~lEl~ 286 (1091)
.+...++..+.-..+-+...-..+...+..|+.....+ .++-.-+..++..+.+.+.....+...+.
T Consensus 338 ~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~i~~~ke~e~~lq 417 (1200)
T KOG0964|consen 338 EEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIEKLKRGINDTKEQENILQ 417 (1200)
T ss_pred HHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 55555555544444444444444444444443332222 22233344445555555555555555555
Q ss_pred HHHHHHHHHHH
Q 001374 287 KKIAKLEAECQ 297 (1091)
Q Consensus 287 KKLaKLEaEcq 297 (1091)
..+..++.++.
T Consensus 418 ~e~~~~e~~l~ 428 (1200)
T KOG0964|consen 418 KEIEDLESELK 428 (1200)
T ss_pred HHHHHHHHHHH
Confidence 55554444443
No 82
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.08 E-value=6.9 Score=50.06 Aligned_cols=194 Identities=21% Similarity=0.219 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHHHHHhhhhcchhhHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhHHHHhhhhhhHHHHHhhhhHHHHHHH
Q 001374 76 TMEEQIKELNEKLSAANSEISAKEDLVKQHTKVAEEAVSGWEKAEAEALALKNHLESVTLSKLTAEDRAAHLDGALKECM 155 (1091)
Q Consensus 76 ~~~~~~k~l~ekls~a~~~~~~kd~lvkqh~kvaeeav~gwekae~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLKec~ 155 (1091)
+|..+|+.|+|||-++-.-- ++ .|+|+ .|..-+|=||+.++-=++-+-.+.+.|..-|+..-
T Consensus 228 eLr~QvrdLtEkLetlR~kR--~E----Dk~Kl------------~ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR 289 (1243)
T KOG0971|consen 228 ELRAQVRDLTEKLETLRLKR--AE----DKAKL------------KELEKMKIQLEQLQEFKSKIMEQQADLQRELKRAR 289 (1243)
T ss_pred HHHHHHHHHHHHHHHHHhhh--hh----hHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999997653321 22 34554 46677788888888888888888888888888777
Q ss_pred HHHHhhhHHHHHHHHH------HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 156 RQIRNLKEEHEQKLQD------FVLTKTKQWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQA 229 (1091)
Q Consensus 156 ~qLr~~reeqeqki~~------~~~~~~~e~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLEelqeeI~EL~eeiErl 229 (1091)
.+.+.+.+-+++-..+ +|...|-+ .++ ++.+-+.++.++..+.+.++++...+.-|+.+.+..
T Consensus 290 ~e~keaqe~ke~~k~emad~ad~iEmaTld-----KEm------AEERaesLQ~eve~lkEr~deletdlEILKaEmeek 358 (1243)
T KOG0971|consen 290 KEAKEAQEAKERYKEEMADTADAIEMATLD-----KEM------AEERAESLQQEVEALKERVDELETDLEILKAEMEEK 358 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7777777766654333 21111111 111 112222233333333333333333333333332221
Q ss_pred HHHH-HHHHhhHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 230 EAEI-ELLKGNIEQCEREINSA--------------KYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEA 294 (1091)
Q Consensus 230 EgEi-~LLkERIenlEKEne~L--------------K~EL~~LqeELEiL~EElE~s~qsaeal~KQ~lEl~KKLaKLEa 294 (1091)
-+.. ....-....++..|.+| +.+...+.++++....|+..+++..+.++.+......+|+.|.+
T Consensus 359 G~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkE 438 (1243)
T KOG0971|consen 359 GSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKE 438 (1243)
T ss_pred CCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 11112233344444444 44556677788888888888888888888888888888888887
Q ss_pred HHHH
Q 001374 295 ECQR 298 (1091)
Q Consensus 295 Ecqr 298 (1091)
.+..
T Consensus 439 QVDA 442 (1243)
T KOG0971|consen 439 QVDA 442 (1243)
T ss_pred HHHH
Confidence 7743
No 83
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.08 E-value=1.6 Score=47.02 Aligned_cols=131 Identities=22% Similarity=0.322 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcchhhHHHHhhHHHHHHHhhhhHHHHHH-----------HHHHHHhHHHHhhhhhhHH
Q 001374 73 QVQTMEEQIKELNEKLSAANSEISAKEDLVKQHTKVAEEAVSGWEKAEAE-----------ALALKNHLESVTLSKLTAE 141 (1091)
Q Consensus 73 ~~~~~~~~~k~l~ekls~a~~~~~~kd~lvkqh~kvaeeav~gwekae~e-----------~~~lK~~Le~~~~q~~~le 141 (1091)
++.+|...|..|..+|....-|- .++|+-.+--+-|+...|-.+++ +-.|+.+|-.+..+..+++
T Consensus 13 ki~~L~n~l~elq~~l~~l~~EN----k~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~ 88 (194)
T PF15619_consen 13 KIKELQNELAELQRKLQELRKEN----KTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELE 88 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778888888887776666 45666666667788888877754 4556666666665555555
Q ss_pred HHHhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 142 DRAAHLDGALKECMRQIRNLKEEHEQKLQDFVLTKTKQWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNM 218 (1091)
Q Consensus 142 ~rv~hLd~aLKec~~qLr~~reeqeqki~~~~~~~~~e~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLEelqee 218 (1091)
.++-+.|+-|-..-.++. +++..+..+ -.. -+.+|..++..++..++.....+..|.+.++-....
T Consensus 89 ~klk~~~~el~k~~~~l~--------~L~~L~~dk--nL~-eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~ 154 (194)
T PF15619_consen 89 RKLKDKDEELLKTKDELK--------HLKKLSEDK--NLA-EREELQRKLSQLEQKLQEKEKKIQELEKQLELENKS 154 (194)
T ss_pred HHHHHHHHHHHHHHHHHH--------HHHHHHHcC--Cch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 555555555444333333 333332222 122 156677777788777777777777777776655443
No 84
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=96.05 E-value=3.5 Score=51.71 Aligned_cols=75 Identities=19% Similarity=0.141 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 001374 217 NMLIKISEEKSQAEAEIELLKGNIEQC--EREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAK 291 (1091)
Q Consensus 217 eeI~EL~eeiErlEgEi~LLkERIenl--EKEne~LK~EL~~LqeELEiL~EElE~s~qsaeal~KQ~lEl~KKLaK 291 (1091)
..+..+..++..++.++..+..++... ...+..+..++..+++++..+..++....+.+..+.+++..+.+++.+
T Consensus 391 ~~~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 467 (650)
T TIGR03185 391 DAKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDE 467 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444432 223344444444444444444444444444444444444444444433
No 85
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=96.03 E-value=6.2 Score=49.13 Aligned_cols=163 Identities=14% Similarity=0.137 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHhhhHHHHH-----HHHHHHHHHhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 149 GALKECMRQIRNLKEEHEQ-----KLQDFVLTKTK----QWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNML 219 (1091)
Q Consensus 149 ~aLKec~~qLr~~reeqeq-----ki~~~~~~~~~----e~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLEelqeeI 219 (1091)
+-|+||..+++++..|-|. --+.++-+|-+ +-|-+..++-.+|..++.++..++ ..+......-
T Consensus 446 DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk-------~il~~Kee~E 518 (961)
T KOG4673|consen 446 DELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEAETLEEKKGELITKLQSEENKLK-------SILRDKEETE 518 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHH-------HHhhhHHHHH
Confidence 6789999999999999883 22233333322 222222223333333444444433 3333333322
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 220 IKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEK-NMSMRSAEAANKQHMEGVKKIAKLEAECQR 298 (1091)
Q Consensus 220 ~EL~eeiErlEgEi~LLkERIenlEKEne~LK~EL~~LqeELEiL~EEl-E~s~qsaeal~KQ~lEl~KKLaKLEaEcqr 298 (1091)
--+.+.+.+..+++.-......+....++.|+.....++.-++.....+ ...+-..+.+..++..++..+..|...+++
T Consensus 519 k~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~ 598 (961)
T KOG4673|consen 519 KLLQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSK 598 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333334444444443333333333444444444444444333333211 111111356677777777777777666654
Q ss_pred Hh-hhhhccCCChHHHHHHHHHHhhhcC
Q 001374 299 LR-GLVRKKLPGPAALAQMKMEVESLGR 325 (1091)
Q Consensus 299 Lr-~l~rk~lpgpaa~a~mk~ev~~l~~ 325 (1091)
.. .++||- ..||-|++.|.|
T Consensus 599 ~Eq~aarrE-------d~~R~Ei~~Lqr 619 (961)
T KOG4673|consen 599 KEQQAARRE-------DMFRGEIEDLQR 619 (961)
T ss_pred HHHHHHHHH-------HHHHHHHHHHHH
Confidence 43 344442 346666666554
No 86
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=95.85 E-value=1.9 Score=49.36 Aligned_cols=173 Identities=12% Similarity=0.132 Sum_probs=104.7
Q ss_pred HHhhhhhhHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHH--HHHHHhhhHH---------------------HHHHHHH
Q 001374 132 SVTLSKLTAEDRAAHLDGALKECMRQIRNLKEEHEQKLQD--FVLTKTKQWD---------------------KIRLEFE 188 (1091)
Q Consensus 132 ~~~~q~~~le~rv~hLd~aLKec~~qLr~~reeqeqki~~--~~~~~~~e~e---------------------~~~~ELE 188 (1091)
....+|..|..|+..|++.|...-.++.++|-+=-.|.-- ++....-+.+ ---..|+
T Consensus 87 sLl~~N~~L~~~~~~le~~L~~~~e~v~qLrHeL~~kdeLL~~ys~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~le~Lq 166 (306)
T PF04849_consen 87 SLLEQNQDLSERNEALEEQLGAALEQVEQLRHELSMKDELLQIYSNDDEESEPESSESTPLRRNESSLSSQKCIQLEALQ 166 (306)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccccCCCccccccccccccccchhHHHHH
Confidence 3445666777777777777766666666655433322110 0000000000 0002244
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 001374 189 AKIANFEQELLRSAAENATLSR-----------SLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIV 257 (1091)
Q Consensus 189 aKLaElEkeLeelkaEl~aLee-----------qLEelqeeI~EL~eeiErlEgEi~LLkERIenlEKEne~LK~EL~~L 257 (1091)
.++..++.+...++.+...|.. -+..+-.++...+..+..+..++..-.+.......++.+|..++..+
T Consensus 167 ~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Llsqivdl 246 (306)
T PF04849_consen 167 EKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDL 246 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444431 12223344445555566666666666777777778888888888888
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 001374 258 SKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLVR 304 (1091)
Q Consensus 258 qeELEiL~EElE~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l~r 304 (1091)
+.++..+..+.+.+.+.+.....-+..+..++..++.......+|+.
T Consensus 247 Q~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~ 293 (306)
T PF04849_consen 247 QQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLH 293 (306)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888887777754
No 87
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=95.84 E-value=2.3 Score=48.73 Aligned_cols=98 Identities=16% Similarity=0.130 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001374 195 EQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRS 274 (1091)
Q Consensus 195 EkeLeelkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIenlEKEne~LK~EL~~LqeELEiL~EElE~s~qs 274 (1091)
-++|.....++..|...|..+.+.+....++|.++-+++..++.|...+--+++.|...|.....-...+..++..+
T Consensus 205 v~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~el--- 281 (306)
T PF04849_consen 205 VKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQEL--- 281 (306)
T ss_pred HHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 34555556666777777777777777778888888888888888888888888888887777766666666664444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 275 AEAANKQHMEGVKKIAKLEAECQRL 299 (1091)
Q Consensus 275 aeal~KQ~lEl~KKLaKLEaEcqrL 299 (1091)
+.++.+...-+...++++..+
T Consensus 282 ----qdkY~E~~~mL~EaQEElk~l 302 (306)
T PF04849_consen 282 ----QDKYAECMAMLHEAQEELKTL 302 (306)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHh
Confidence 444555555555555555444
No 88
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=95.81 E-value=4.6 Score=46.10 Aligned_cols=140 Identities=20% Similarity=0.237 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhc----chhhHHHHhhHHHHHHHhhhhHHHHHHHH-------HHHHhHHHHhhhhhhHHH
Q 001374 74 VQTMEEQIKELNEKLSAANSEI----SAKEDLVKQHTKVAEEAVSGWEKAEAEAL-------ALKNHLESVTLSKLTAED 142 (1091)
Q Consensus 74 ~~~~~~~~k~l~ekls~a~~~~----~~kd~lvkqh~kvaeeav~gwekae~e~~-------~lK~~Le~~~~q~~~le~ 142 (1091)
.++|+..|.+.--+|++|+.+. ++|-||----...-.|=+.=++|.--++. .|-+||-.|..+...|+.
T Consensus 86 kerLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~nsLe~ 165 (305)
T PF14915_consen 86 KERLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESKFNSLEI 165 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 5689999999999999999986 55655554444444555566677766664 455677788888888888
Q ss_pred HHhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 143 RAAHLDGALKECMRQIRNLKEEHEQKLQDFVLTKTKQWDKIRLEFEA-------KIANFEQELLRSAAENATLSRSLQER 215 (1091)
Q Consensus 143 rv~hLd~aLKec~~qLr~~reeqeqki~~~~~~~~~e~e~~~~ELEa-------KLaElEkeLeelkaEl~aLeeqLEel 215 (1091)
.+.|.-+||++..==|..++-+-.|.-+. .+|.+.....-+. +-..++.+|..+..++--|..+|+..
T Consensus 166 elh~trdaLrEKtL~lE~~QrdL~Qtq~q-----~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA 240 (305)
T PF14915_consen 166 ELHHTRDALREKTLALESVQRDLSQTQCQ-----IKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDA 240 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888889988875555555443332211 1222222222222 22333555555566666666666555
Q ss_pred HHH
Q 001374 216 SNM 218 (1091)
Q Consensus 216 qee 218 (1091)
++.
T Consensus 241 ~~K 243 (305)
T PF14915_consen 241 HNK 243 (305)
T ss_pred HHH
Confidence 443
No 89
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=95.80 E-value=4.5 Score=54.95 Aligned_cols=92 Identities=12% Similarity=0.092 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001374 195 EQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRS 274 (1091)
Q Consensus 195 EkeLeelkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIenlEKEne~LK~EL~~LqeELEiL~EElE~s~qs 274 (1091)
...+.....++..+...++..+..+..+..++..+..++..+.+.+... ...+..+|..+..+++.+..++....+.
T Consensus 874 ~~~~~~a~~~le~ae~~l~~~~~e~~~~~~e~~~a~~~l~~l~e~l~~~---~eel~a~L~e~r~rL~~l~~el~~~~~~ 950 (1353)
T TIGR02680 874 ATRAAEQRARAARAESDAREAAEDAAEARAEAEEASLRLRTLEESVGAM---VDEIRARLAETRAALASGGRELPRLAEA 950 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444555555555555555555555555555555444444322 3344444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHH
Q 001374 275 AEAANKQHMEGVKKI 289 (1091)
Q Consensus 275 aeal~KQ~lEl~KKL 289 (1091)
...+...+.....++
T Consensus 951 ~~~a~~~~~~a~~~~ 965 (1353)
T TIGR02680 951 LATAEEARGRAEEKR 965 (1353)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444444
No 90
>PRK11281 hypothetical protein; Provisional
Probab=95.73 E-value=4.1 Score=54.15 Aligned_cols=124 Identities=12% Similarity=0.059 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHH
Q 001374 180 WDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKG-NIEQCEREINSAKYELHIVS 258 (1091)
Q Consensus 180 ~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkE-RIenlEKEne~LK~EL~~Lq 258 (1091)
.|..-.+++.++.+.++.+..+..++..+....+..+..+.+....+..++.+++.... .-.-.+.....|+.|+..+.
T Consensus 126 LEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~~l~ 205 (1113)
T PRK11281 126 LESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLN 205 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHH
Confidence 44444445555555555555555555555555555555555555555555544432110 00000122333444444444
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001374 259 KELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLV 303 (1091)
Q Consensus 259 eELEiL~EElE~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l~ 303 (1091)
.+.+....++.......+-.+.++.....++..+++.++.++..+
T Consensus 206 ~~~~~~~~~l~~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~i 250 (1113)
T PRK11281 206 AQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAI 250 (1113)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444445555555555555555555555555444
No 91
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=95.58 E-value=2.4 Score=43.69 Aligned_cols=107 Identities=17% Similarity=0.211 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 001374 813 ELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVNLLR 892 (1091)
Q Consensus 813 qLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selEeqLk~~~e~ledLesrL~eLeaElkeLq 892 (1091)
.+..++...+..-..+.+.+..+...|...+.....+..+....+..+..+++++..+ ...++.++.++..+.
T Consensus 7 ~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~l-------t~el~~L~~EL~~l~ 79 (140)
T PF10473_consen 7 HVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEEL-------TSELNQLELELDTLR 79 (140)
T ss_pred HHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555555555555555555555444444444433 344444555555555
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh
Q 001374 893 AKIESLENELQDEKMSHHNAMAKCKELEEQLQRN 926 (1091)
Q Consensus 893 eKVesLE~ELe~ek~~~eEleaK~~eLEeQLe~~ 926 (1091)
.....|.++++..+..+.+++..+..+..-|...
T Consensus 80 sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~ 113 (140)
T PF10473_consen 80 SEKENLDKELQKKQEKVSELESLNSSLENLLQEK 113 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 5555566666666666666666655555555533
No 92
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.57 E-value=0.64 Score=53.46 Aligned_cols=30 Identities=20% Similarity=0.374 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHhhcCCC
Q 001374 946 DLAAAAERLAECQ----ETILLLGKQLKSLRPQS 975 (1091)
Q Consensus 946 EIaaAeeKLAEcQ----eTI~sLEKQLKsLa~q~ 975 (1091)
+|+.+...+.+|+ ..|..|...+..|...+
T Consensus 259 eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le~~~ 292 (325)
T PF08317_consen 259 EIAEAEKIREECRGWTRSEVKRLKAKVDALEKLT 292 (325)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 4444444444444 24555555555555543
No 93
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=95.55 E-value=0.0039 Score=79.62 Aligned_cols=108 Identities=18% Similarity=0.211 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 001374 810 EFEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVN 889 (1091)
Q Consensus 810 elEqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selEeqLk~~~e~ledLesrL~eLeaElk 889 (1091)
.|.++++.+.+++..|..-......+...++.++..+.++..++..-......+...+..+..+++.+.-++.+.+.+..
T Consensus 744 ~i~kLE~ri~eLE~~Le~E~r~~~~~~k~~rk~er~~kEl~~q~ee~~k~~~~~~d~~~kl~~k~k~~krq~eeaEe~~~ 823 (859)
T PF01576_consen 744 QIAKLEARIRELEEELESEQRRRAEAQKQLRKLERRVKELQFQVEEERKNAERLQDLVDKLQLKLKQLKRQLEEAEEEAS 823 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 34567777777777777777777777777777777777777777776664444555555554444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 001374 890 LLRAKIESLENELQDEKMSHHNAMAKCK 917 (1091)
Q Consensus 890 eLqeKVesLE~ELe~ek~~~eEleaK~~ 917 (1091)
+...+...+..+|+........+...+.
T Consensus 824 ~~~~k~Rk~q~elee~~e~~~~~e~~l~ 851 (859)
T PF01576_consen 824 RNLAKYRKLQRELEEAEERAEAAERELN 851 (859)
T ss_dssp -------SSSSHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444333333333333
No 94
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=95.47 E-value=2.8 Score=45.68 Aligned_cols=110 Identities=16% Similarity=0.130 Sum_probs=72.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhcc--cchhHhh---
Q 001374 865 TQLKCMAESYRSLETHAQELEAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNENCAVC--SSEADEN--- 939 (1091)
Q Consensus 865 eqLk~~~e~ledLesrL~eLeaElkeLqeKVesLE~ELe~ek~~~eEleaK~~eLEeQLe~~~~~~lk--~q~dkdL--- 939 (1091)
.+-.....-+..++.-|..+-.++..+...+..+..--+.++.++.++..++...++++..+...... ...+..+
T Consensus 76 ~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~ANeei~~v 155 (207)
T PF05010_consen 76 KERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEKLEKANEEIAQV 155 (207)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444555555566666666666777767777888888888888888888877652211 2222222
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 001374 940 KIKQDRDLAAAAERLAECQETILLLGKQLKSLRPQ 974 (1091)
Q Consensus 940 KikqEkEIaaAeeKLAEcQeTI~sLEKQLKsLa~q 974 (1091)
+.....++.++.-.+-.-+..+.+|+.+|......
T Consensus 156 ~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kE 190 (207)
T PF05010_consen 156 RSKHQAELLALQASLKKEEMKVQSLEESLEQKTKE 190 (207)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566788888888888899999999988876554
No 95
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=95.44 E-value=2 Score=49.88 Aligned_cols=25 Identities=32% Similarity=0.407 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 001374 946 DLAAAAERLAECQETILLLGKQLKS 970 (1091)
Q Consensus 946 EIaaAeeKLAEcQeTI~sLEKQLKs 970 (1091)
++..+...+...+..+..+..+|..
T Consensus 247 ~l~~~~~~l~~~~~~l~~~~~~l~~ 271 (423)
T TIGR01843 247 ELTEAQARLAELRERLNKARDRLQR 271 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5566666666666666666666654
No 96
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=95.40 E-value=1.5 Score=44.13 Aligned_cols=72 Identities=25% Similarity=0.368 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhcccchhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001374 894 KIESLENELQDEKMSHHNAMAKCKELEEQLQRNENCAVCSSEADENKIKQDRDLAAAAERLAECQETILLLGKQLKSL 971 (1091)
Q Consensus 894 KVesLE~ELe~ek~~~eEleaK~~eLEeQLe~~~~~~lk~q~dkdLKikqEkEIaaAeeKLAEcQeTI~sLEKQLKsL 971 (1091)
.+..++.++...+..+.++..........|......|. .-+...+++|..+..++.+....=.-|-.||..+
T Consensus 60 ~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~------~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 60 ELQQLREELQELQQEINELKAEAESAKAELEESEASWE------EQKEQLEKELSELEQRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33334444444444444444444444444443333222 1144456677777777777777777777777654
No 97
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=95.38 E-value=3 Score=48.16 Aligned_cols=30 Identities=37% Similarity=0.606 Sum_probs=25.2
Q ss_pred hhhhhhHHHHHHHHhHHHHHHHHHHHHHhh
Q 001374 357 KFQKENEFLTERLLAMEEETKMLKEALAKR 386 (1091)
Q Consensus 357 ~~~~~~~~l~~rl~~~eee~k~lke~l~~k 386 (1091)
...-||.||-+||...++|...+|..++|=
T Consensus 193 aLi~ENRyL~erl~q~qeE~~l~k~~i~KY 222 (319)
T PF09789_consen 193 ALIMENRYLKERLKQLQEEKELLKQTINKY 222 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456689999999999999999888877653
No 98
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=95.36 E-value=1.7 Score=46.96 Aligned_cols=31 Identities=19% Similarity=0.160 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 810 EFEELKLEKDNLATDLARCTENLEMTKSQLY 840 (1091)
Q Consensus 810 elEqLEsEkeelE~eLee~~eklEel~~qLq 840 (1091)
.+..++.++.++...++.+......+...-.
T Consensus 13 ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~ 43 (194)
T PF15619_consen 13 KIKELQNELAELQRKLQELRKENKTLKQLQK 43 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666666666555544444333
No 99
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=95.36 E-value=5.2 Score=43.37 Aligned_cols=177 Identities=21% Similarity=0.281 Sum_probs=92.8
Q ss_pred HHHHhHHHHhhhhhhHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 125 ALKNHLESVTLSKLTAEDRAAHLDGALKECMRQIRNLKEEHEQKLQDFVLTKTKQWDKIRLEFEAKIANFEQELLRSAAE 204 (1091)
Q Consensus 125 ~lK~~Le~~~~q~~~le~rv~hLd~aLKec~~qLr~~reeqeqki~~~~~~~~~e~e~~~~ELEaKLaElEkeLeelkaE 204 (1091)
.+|.=-.+.|.-++++ =..||+-|.+++.--+..+..+.++. ...+..-.--..++..+.++..++..+...
T Consensus 13 ~iK~YYndIT~~NL~l-------IksLKeei~emkk~e~~~~k~m~ei~-~eN~~L~epL~~a~~e~~eL~k~L~~y~kd 84 (201)
T PF13851_consen 13 EIKNYYNDITLNNLEL-------IKSLKEEIAEMKKKEERNEKLMAEIS-QENKRLSEPLKKAEEEVEELRKQLKNYEKD 84 (201)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666667777777654 34678888888776666666666663 222222222222333333333333332221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 001374 205 NATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHME 284 (1091)
Q Consensus 205 l~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIenlEKEne~LK~EL~~LqeELEiL~EElE~s~qsaeal~KQ~lE 284 (1091)
...+......+..+..++..+.-+..++.+|+..++++...|...+...-.++.....-+..+ +.+.+..
T Consensus 85 ----K~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~l------LEkKl~~ 154 (201)
T PF13851_consen 85 ----KQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLL------LEKKLQA 154 (201)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHH
Confidence 122233344444455555555556666666666666666666555554444444444433333 2223333
Q ss_pred HHHHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHhh
Q 001374 285 GVKKIAKLEAECQRLRGLVRKKLPGPAALAQMKMEVES 322 (1091)
Q Consensus 285 l~KKLaKLEaEcqrLr~l~rk~lpgpaa~a~mk~ev~~ 322 (1091)
+...+.+-+ ..+..++...-|.|+|+..+..-|+.
T Consensus 155 l~~~lE~ke---aqL~evl~~~nldp~~~~~v~~~l~~ 189 (201)
T PF13851_consen 155 LSEQLEKKE---AQLNEVLAAANLDPAALSQVSKKLED 189 (201)
T ss_pred HHHHHHHHH---HHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 333333333 34455566677899999988887775
No 100
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=95.30 E-value=7.3 Score=44.82 Aligned_cols=58 Identities=26% Similarity=0.300 Sum_probs=30.5
Q ss_pred HHHHHHHHhHHHHhhhhhhHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHH
Q 001374 121 AEALALKNHLESVTLSKLTAEDRAAHLDGALKECMRQIRNLKEEHEQKLQDFVLTKTKQWDK 182 (1091)
Q Consensus 121 ~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLKec~~qLr~~reeqeqki~~~~~~~~~e~e~ 182 (1091)
.+-..||..|+........|++-+. +|++.--.+..-=|..|..|.-.++++-....+
T Consensus 34 qen~~Lk~El~~ek~~~~~L~~e~~----~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~k 91 (310)
T PF09755_consen 34 QENRVLKRELETEKARCKHLQEENR----ALREASVRIQAKAEQEEEFISNTLLKKLQQLKK 91 (310)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566655555555444433 344444444444455556677776666544333
No 101
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.22 E-value=4 Score=46.03 Aligned_cols=154 Identities=18% Similarity=0.219 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHH----
Q 001374 810 EFEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELE---- 885 (1091)
Q Consensus 810 elEqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selEeqLk~~~e~ledLesrL~eLe---- 885 (1091)
++..++.++.+++++|+.+..+++.+...+.++..++.+++.++..++..+..+++.|..-.+.++. |+-.+.
T Consensus 39 ~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~---raRAmq~nG~ 115 (265)
T COG3883 39 KLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKK---RARAMQVNGT 115 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHcCC
Confidence 5677777888888888888888888888888888888888888887777777777666654443322 322211
Q ss_pred ------------------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhcc-cchhHhh---hhhh
Q 001374 886 ------------------AEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNENCAVC-SSEADEN---KIKQ 943 (1091)
Q Consensus 886 ------------------aElkeLqeKVesLE~ELe~ek~~~eEleaK~~eLEeQLe~~~~~~lk-~q~dkdL---Kikq 943 (1091)
.++.-+...|+.-..-|+..+.....++.+-..++.+++.+...... ...-..| +-.+
T Consensus 116 ~t~Yidvil~SkSfsD~IsRvtAi~~iv~aDk~ile~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~qk~e~ 195 (265)
T COG3883 116 ATSYIDVILNSKSFSDLISRVTAISVIVDADKKILEQQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQKAEK 195 (265)
T ss_pred hhHHHHHHHccCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444444444455555555555555554430000 0000011 2334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001374 944 DRDLAAAAERLAECQETILLLGK 966 (1091)
Q Consensus 944 EkEIaaAeeKLAEcQeTI~sLEK 966 (1091)
..-+..+..+.++.......|.+
T Consensus 196 ~~l~~~~aa~~a~~~~e~a~l~~ 218 (265)
T COG3883 196 NALIAALAAKEASALGEKAALEE 218 (265)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHH
Confidence 44556666666666666666663
No 102
>PRK10869 recombination and repair protein; Provisional
Probab=95.18 E-value=9.8 Score=47.12 Aligned_cols=119 Identities=18% Similarity=0.120 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCChHHHHH----HHHHHhhhcCCcCCc
Q 001374 255 HIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLVRKKLPGPAALAQ----MKMEVESLGRDYGDS 330 (1091)
Q Consensus 255 ~~LqeELEiL~EElE~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l~rk~lpgpaa~a~----mk~ev~~l~~~~~~~ 330 (1091)
..+...++.....++.....+...-..+.-.-..+..+++.+..+..|.||-=|.+..|-. ++.|++.+.
T Consensus 264 ~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~dp~~l~~ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L~------ 337 (553)
T PRK10869 264 SGVLDMLEEALIQIQEASDELRHYLDRLDLDPNRLAELEQRLSKQISLARKHHVSPEELPQHHQQLLEEQQQLD------ 337 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh------
Confidence 3333444444444444433333333333334556889999999999999999988887744 444444322
Q ss_pred cccCCCCCCCCCCCCCCcccchhhhHhhhhhhHHHHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHH
Q 001374 331 RLKRSPVKPTSPHLSPVSEFSLDNVQKFQKENEFLTERLLAMEEETKMLKEALAKRNSELQASRNLCAKTASKLQSLEAQ 410 (1091)
Q Consensus 331 r~rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~rl~~~eee~k~lke~l~~k~~elq~sr~~~a~t~~kl~~~e~q 410 (1091)
-.-+++..++.+-+.++..|.+...+|-..|...|+...+ .|..+
T Consensus 338 ---------------------------------~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~aA~~l~~--~v~~~ 382 (553)
T PRK10869 338 ---------------------------------DQEDDLETLALAVEKHHQQALETAQKLHQSRQRYAKELAQ--LITES 382 (553)
T ss_pred ---------------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence 1245677888888899999999999999999999987753 56777
Q ss_pred Hhhh
Q 001374 411 MQTS 414 (1091)
Q Consensus 411 ~~~~ 414 (1091)
|..+
T Consensus 383 L~~L 386 (553)
T PRK10869 383 MHEL 386 (553)
T ss_pred HHHc
Confidence 7766
No 103
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=95.15 E-value=1.2 Score=46.97 Aligned_cols=104 Identities=24% Similarity=0.341 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 817 EKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVNLLRAKIE 896 (1091)
Q Consensus 817 EkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selEeqLk~~~e~ledLesrL~eLeaElkeLqeKVe 896 (1091)
++.+.+..+.....++..+...+.++...+..++.............+..+..+...++.+..++..+..++...+..+.
T Consensus 82 e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~ 161 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQ 161 (191)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444333333333333333333333333333333333333333334444
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHH
Q 001374 897 SLENELQDEKMSHHNAMAKCKELE 920 (1091)
Q Consensus 897 sLE~ELe~ek~~~eEleaK~~eLE 920 (1091)
.+..++...+.....+...+.+++
T Consensus 162 ~~~~~~~~~~~~~~~l~~~~~~~~ 185 (191)
T PF04156_consen 162 ELRSQLERLQENLQQLEEKIQELQ 185 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444433333
No 104
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=94.89 E-value=1.6 Score=45.93 Aligned_cols=109 Identities=18% Similarity=0.243 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 187 FEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNE 266 (1091)
Q Consensus 187 LEaKLaElEkeLeelkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIenlEKEne~LK~EL~~LqeELEiL~E 266 (1091)
.+.++.+.+..+..+..++..+...+......+..+........+......+++..++.....+..++..+.+++.....
T Consensus 79 ~~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~ 158 (191)
T PF04156_consen 79 LQGELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQKELQDSRE 158 (191)
T ss_pred hhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555555555555555555555555666666666666666666666666666644444444
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 267 EKNMSMRSAEAANKQHMEGVKKIAKLEAE 295 (1091)
Q Consensus 267 ElE~s~qsaeal~KQ~lEl~KKLaKLEaE 295 (1091)
...............+......+..++..
T Consensus 159 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~l 187 (191)
T PF04156_consen 159 EVQELRSQLERLQENLQQLEEKIQELQEL 187 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444433
No 105
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=94.88 E-value=18 Score=47.09 Aligned_cols=38 Identities=16% Similarity=0.111 Sum_probs=24.6
Q ss_pred HHHhHHHHhhhhhhHHHHHhhhhHHHHHHHHHHHhhhHH
Q 001374 126 LKNHLESVTLSKLTAEDRAAHLDGALKECMRQIRNLKEE 164 (1091)
Q Consensus 126 lK~~Le~~~~q~~~le~rv~hLd~aLKec~~qLr~~ree 164 (1091)
=++.|...+-|.++++-....|+ .+++|-..=..+.+.
T Consensus 60 p~kelfi~riq~ldlete~a~~~-~iaevtd~~~~vlel 97 (1195)
T KOG4643|consen 60 PTKELFIQRIQILDLETEMAQMR-TIAEVTDEECQVLEL 97 (1195)
T ss_pred CcHHHHHHHHHhhhhHHHHHHHH-HHHHhhhhHHhhhhh
Confidence 34556777777777777777776 677766555555443
No 106
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=94.71 E-value=20 Score=46.74 Aligned_cols=114 Identities=14% Similarity=0.102 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 187 FEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNE 266 (1091)
Q Consensus 187 LEaKLaElEkeLeelkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIenlEKEne~LK~EL~~LqeELEiL~E 266 (1091)
+..++..+.+.|.....++..+.....++.++|.......+........|.+++-++++++..|-.+|+.+..- .+
T Consensus 486 l~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t----~q 561 (1195)
T KOG4643|consen 486 LLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKTT----SQ 561 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH----hH
Confidence 33334444444444455555555555555555555555555666666667777777777777777777666552 23
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 001374 267 EKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLVRK 305 (1091)
Q Consensus 267 ElE~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l~rk 305 (1091)
....+.+......-.+.+..+-+.+|. .+++-+-.+++
T Consensus 562 n~~~LEq~~n~lE~~~~elkk~idaL~-alrrhke~LE~ 599 (1195)
T KOG4643|consen 562 NGALLEQNNNDLELIHNELKKYIDALN-ALRRHKEKLEE 599 (1195)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 444455555555556666666666666 44444444444
No 107
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=94.69 E-value=8.1 Score=47.76 Aligned_cols=124 Identities=18% Similarity=0.177 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHhhhcCCcCCcccc
Q 001374 254 LHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLVRKKLPGPAALAQMKMEVESLGRDYGDSRLK 333 (1091)
Q Consensus 254 L~~LqeELEiL~EElE~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l~rk~lpgpaa~a~mk~ev~~l~~~~~~~r~r 333 (1091)
+..+.+.++....+++.....+...-..+.-.-..+..+++.+..+..+.||.-|.+..+-.-+.+++.-=
T Consensus 268 ~~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL--------- 338 (563)
T TIGR00634 268 LRELAEQVGNALTEVEEATRELQNYLDELEFDPERLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEEL--------- 338 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH---------
Confidence 33344444444444444444444433344444566888999999999999999988888755444433200
Q ss_pred CCCCCCCCCCCCCCcccchhhhHhhhhhhHHHHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHhh
Q 001374 334 RSPVKPTSPHLSPVSEFSLDNVQKFQKENEFLTERLLAMEEETKMLKEALAKRNSELQASRNLCAKTASKLQSLEAQMQT 413 (1091)
Q Consensus 334 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~rl~~~eee~k~lke~l~~k~~elq~sr~~~a~t~~kl~~~e~q~~~ 413 (1091)
..+......+..++.+...+++-|.+...+|-..|...|+...+ .+..+|..
T Consensus 339 --------------------------~~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~R~~~a~~l~~--~v~~~l~~ 390 (563)
T TIGR00634 339 --------------------------DQLDDSDESLEALEEEVDKLEEELDKAAVALSLIRRKAAERLAK--RVEQELKA 390 (563)
T ss_pred --------------------------HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHh
Confidence 01112234666777788888888888888888888888876643 45555554
Q ss_pred h
Q 001374 414 S 414 (1091)
Q Consensus 414 ~ 414 (1091)
+
T Consensus 391 L 391 (563)
T TIGR00634 391 L 391 (563)
T ss_pred C
Confidence 4
No 108
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=94.69 E-value=0.23 Score=52.93 Aligned_cols=99 Identities=30% Similarity=0.372 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 001374 807 SLEEFEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEA 886 (1091)
Q Consensus 807 s~EelEqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selEeqLk~~~e~ledLesrL~eLea 886 (1091)
..+|+..+......+...|...+.++..+...+......|..|+.++..++..+..++.+++.....+..+.+.+..++.
T Consensus 79 l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l 158 (194)
T PF08614_consen 79 LQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQL 158 (194)
T ss_dssp -----------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777777777777777778888888888888888888888888888887777888888777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001374 887 EVNLLRAKIESLENELQDE 905 (1091)
Q Consensus 887 ElkeLqeKVesLE~ELe~e 905 (1091)
++..+..++..|+.|-..+
T Consensus 159 ~~~~~e~k~~~l~~En~~L 177 (194)
T PF08614_consen 159 QLNMLEEKLRKLEEENREL 177 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7777777777777766553
No 109
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=94.65 E-value=6.3 Score=42.87 Aligned_cols=52 Identities=15% Similarity=0.242 Sum_probs=39.2
Q ss_pred HHHHHHHHhHHHHhhhhhhHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHHH
Q 001374 121 AEALALKNHLESVTLSKLTAEDRAAHLDGALKECMRQIRNLKEEHEQKLQDF 172 (1091)
Q Consensus 121 ~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLKec~~qLr~~reeqeqki~~~ 172 (1091)
.|+++||.+|-++..+....+.++..|.+++..+-.+|.....|-.++..++
T Consensus 31 ~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea 82 (202)
T PF06818_consen 31 SEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEA 82 (202)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHH
Confidence 7889999999999888888888888888888777777665555544443333
No 110
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.61 E-value=4.1 Score=51.87 Aligned_cols=117 Identities=16% Similarity=0.162 Sum_probs=70.1
Q ss_pred CHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHH
Q 001374 807 SLEEFEELKLE-KDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELE 885 (1091)
Q Consensus 807 s~EelEqLEsE-keelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selEeqLk~~~e~ledLesrL~eLe 885 (1091)
+.+.++.++.+ +........+++..+..++.+.+..-..|.+++.++..++..-..+.+.++...+..+.+..|+..+-
T Consensus 541 L~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl 620 (717)
T PF10168_consen 541 LSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVL 620 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556555 45555556666666666666666666666777777776666555555566666666666666665543
Q ss_pred ------------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 001374 886 ------------AEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQ 924 (1091)
Q Consensus 886 ------------aElkeLqeKVesLE~ELe~ek~~~eEleaK~~eLEeQLe 924 (1091)
+| +...+.+..+..++...+..++.+..++...+.++.
T Consensus 621 ~~l~~~~P~LS~AE-r~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~ 670 (717)
T PF10168_consen 621 QLLNSQLPVLSEAE-REFKKELERMKDQLQDLKASIEQLKKKLDYQQRQIE 670 (717)
T ss_pred HHHhccCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22 344455556666666666666666666655555554
No 111
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=94.55 E-value=0.27 Score=52.45 Aligned_cols=107 Identities=24% Similarity=0.285 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001374 193 NFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSM 272 (1091)
Q Consensus 193 ElEkeLeelkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIenlEKEne~LK~EL~~LqeELEiL~EElE~s~ 272 (1091)
.++..+..++.++..+.+.-..+...+..++.++..++..+.....+|..+..++..|+.++..+..++.....-.+.+.
T Consensus 71 ~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~ 150 (194)
T PF08614_consen 71 SLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQ 150 (194)
T ss_dssp -------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444555555555555555555555656666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 273 RSAEAANKQHMEGVKKIAKLEAECQRL 299 (1091)
Q Consensus 273 qsaeal~KQ~lEl~KKLaKLEaEcqrL 299 (1091)
..+.+++-++..+.+++.+++.+-..|
T Consensus 151 DE~~~L~l~~~~~e~k~~~l~~En~~L 177 (194)
T PF08614_consen 151 DELQALQLQLNMLEEKLRKLEEENREL 177 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666667777777777777665443
No 112
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.54 E-value=1.8 Score=54.59 Aligned_cols=57 Identities=12% Similarity=0.066 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 001374 812 EELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLK 868 (1091)
Q Consensus 812 EqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selEeqLk 868 (1091)
-.++..+..+...++.+.+...+++.+.++++.++....++...+.+.+..++.++.
T Consensus 660 ~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 660 QKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345566666666666666666666666666666666666666666666666666666
No 113
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=94.54 E-value=3.6 Score=46.35 Aligned_cols=104 Identities=17% Similarity=0.188 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 001374 189 AKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQ-------AEAEIELLKGNIEQCEREINSAKYELHIVSKEL 261 (1091)
Q Consensus 189 aKLaElEkeLeelkaEl~aLeeqLEelqeeI~EL~eeiEr-------lEgEi~LLkERIenlEKEne~LK~EL~~LqeEL 261 (1091)
.+|.+++.++++++.+...-.-+|+.+...+..-..+.+. +..+...+.+-.+++++....|..++..-+..+
T Consensus 18 qKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv 97 (307)
T PF10481_consen 18 QKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQV 97 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHH
Confidence 3455555555555555555554555444444333333333 333333333444444444444444443333333
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 262 EIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRL 299 (1091)
Q Consensus 262 EiL~EElE~s~qsaeal~KQ~lEl~KKLaKLEaEcqrL 299 (1091)
..+.. .+....+++..+...|..+..++.+.
T Consensus 98 ~~lEg-------Ql~s~Kkqie~Leqelkr~KsELErs 128 (307)
T PF10481_consen 98 NFLEG-------QLNSCKKQIEKLEQELKRCKSELERS 128 (307)
T ss_pred HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333 33333334444444444444444433
No 114
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=94.54 E-value=6.9 Score=46.51 Aligned_cols=106 Identities=15% Similarity=0.054 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 218 MLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQ 297 (1091)
Q Consensus 218 eI~EL~eeiErlEgEi~LLkERIenlEKEne~LK~EL~~LqeELEiL~EElE~s~qsaeal~KQ~lEl~KKLaKLEaEcq 297 (1091)
+..++...+.++.+...-+.+..+.....++.+..++...++........+...++...+.+.-+.++.+.+..+....-
T Consensus 312 entelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ekeatqELieelrkelehlr~~kl 391 (502)
T KOG0982|consen 312 ENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEEKEATQELIEELRKELEHLRRRKL 391 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555556666667777777776665555555555555555555555555555544443333
Q ss_pred HHhhhhhccCCChHHHHHHHHHHhhhcC
Q 001374 298 RLRGLVRKKLPGPAALAQMKMEVESLGR 325 (1091)
Q Consensus 298 rLr~l~rk~lpgpaa~a~mk~ev~~l~~ 325 (1091)
.+..-+| -|..|-+.-.-.||..|-.
T Consensus 392 ~~a~p~r--grsSaRe~eleqevkrLrq 417 (502)
T KOG0982|consen 392 VLANPVR--GRSSAREIELEQEVKRLRQ 417 (502)
T ss_pred Hhhcccc--CchhHHHHHHHHHHHHhcc
Confidence 3222222 2223444445566665543
No 115
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=94.53 E-value=11 Score=43.54 Aligned_cols=152 Identities=16% Similarity=0.199 Sum_probs=103.5
Q ss_pred HHHhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH----HHH
Q 001374 174 LTKTKQWDKIRLEFE-AKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCER----EIN 248 (1091)
Q Consensus 174 ~~~~~e~e~~~~ELE-aKLaElEkeLeelkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIenlEK----Ene 248 (1091)
...++.|=.=|+.+- .=+..+...++.++.+...|...++.++..+-.+......+..++..+++....++. +..
T Consensus 128 l~ak~~WYeWR~kllegLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~ 207 (312)
T smart00787 128 LEAKKMWYEWRMKLLEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELD 207 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHH
Confidence 344555655555443 333445667777777777777777777777888888888888888877777766544 677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc-cCCChHHHHHHHHHHhhhcC
Q 001374 249 SAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLVRK-KLPGPAALAQMKMEVESLGR 325 (1091)
Q Consensus 249 ~LK~EL~~LqeELEiL~EElE~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l~rk-~lpgpaa~a~mk~ev~~l~~ 325 (1091)
.++.+|..+..++.....+++..+..+..+...+.+..++..++..+++.+...+.. +-=.+.=+.+.|..|..|-.
T Consensus 208 ~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le~ 285 (312)
T smart00787 208 RAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQS 285 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 777777777777777777777777777777777777777777777777776665422 22224556778888877654
No 116
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=94.50 E-value=2 Score=49.52 Aligned_cols=34 Identities=29% Similarity=0.495 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHHH----HHHHHHHHHHHhhcCCCc
Q 001374 943 QDRDLAAAAERLAECQ----ETILLLGKQLKSLRPQSE 976 (1091)
Q Consensus 943 qEkEIaaAeeKLAEcQ----eTI~sLEKQLKsLa~q~e 976 (1091)
...+|+.|+..+.+|+ ..|..|...+..|...+.
T Consensus 251 ~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le~l~g 288 (312)
T smart00787 251 LNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQSLTG 288 (312)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC
Confidence 3446666666666664 466667777766666544
No 117
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=94.47 E-value=3.5 Score=50.68 Aligned_cols=89 Identities=21% Similarity=0.216 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 001374 814 LKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVNLLRA 893 (1091)
Q Consensus 814 LEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selEeqLk~~~e~ledLesrL~eLeaElkeLqe 893 (1091)
++..+..+++..+.+.-++..+..+..+...+|.+|+.-|+.-+..+-..|+.+...--....|+++--.|-+++-+|.-
T Consensus 109 yQerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQqellsrtsLETqKlDLmaevSeLKL 188 (861)
T KOG1899|consen 109 YQERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQELLSRTSLETQKLDLMAEVSELKL 188 (861)
T ss_pred HHHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHHHhhhhHHHHHhHHHHHHHHhHH
Confidence 33444444444444444444455555555555555555555444444445555555544556666666666677777766
Q ss_pred HHHHHHHHH
Q 001374 894 KIESLENEL 902 (1091)
Q Consensus 894 KVesLE~EL 902 (1091)
+..++++|.
T Consensus 189 kltalEkeq 197 (861)
T KOG1899|consen 189 KLTALEKEQ 197 (861)
T ss_pred HHHHHHHHh
Confidence 666666544
No 118
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=94.34 E-value=12 Score=43.37 Aligned_cols=10 Identities=20% Similarity=0.401 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 001374 286 VKKIAKLEAE 295 (1091)
Q Consensus 286 ~KKLaKLEaE 295 (1091)
...+..+++.
T Consensus 252 ~~~l~~~~~~ 261 (423)
T TIGR01843 252 QARLAELRER 261 (423)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 119
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=94.31 E-value=4.4 Score=40.88 Aligned_cols=30 Identities=20% Similarity=0.233 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 812 EELKLEKDNLATDLARCTENLEMTKSQLYE 841 (1091)
Q Consensus 812 EqLEsEkeelE~eLee~~eklEel~~qLqe 841 (1091)
..++.++..+......+..++..+...+..
T Consensus 6 ~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~ 35 (132)
T PF07926_consen 6 SSLQSELQRLKEQEEDAEEQLQSLREDLES 35 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443333333333
No 120
>PRK01156 chromosome segregation protein; Provisional
Probab=94.31 E-value=24 Score=45.94 Aligned_cols=84 Identities=12% Similarity=0.158 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 001374 837 SQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVNLLRAKIESLENELQDEKMSHHNAMAKC 916 (1091)
Q Consensus 837 ~qLqelE~~LeELesQLesLqeS~selEeqLk~~~e~ledLesrL~eLeaElkeLqeKVesLE~ELe~ek~~~eEleaK~ 916 (1091)
.++......+.+++.++..+...+..+..++..+.... ..+...+.++..+......++.++..+...+..+..++
T Consensus 629 ~~le~~~~~l~~~~~~i~~~~~~i~~l~~~i~~l~~~~----~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~l~~~i 704 (895)
T PRK01156 629 NNLNNKYNEIQENKILIEKLRGKIDNYKKQIAEIDSII----PDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTI 704 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444445544444444444444332211 11222333444444444444444444444444444444
Q ss_pred HHHHHHHH
Q 001374 917 KELEEQLQ 924 (1091)
Q Consensus 917 ~eLEeQLe 924 (1091)
..+..++.
T Consensus 705 ~~l~~~~~ 712 (895)
T PRK01156 705 EILRTRIN 712 (895)
T ss_pred HHHHhhHH
Confidence 44444433
No 121
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=94.26 E-value=9.2 Score=42.82 Aligned_cols=214 Identities=18% Similarity=0.167 Sum_probs=134.8
Q ss_pred cchhhHHHHhhHHHHHHH-hhhhHH------------HHHHHHHHHHhHHHHhhhhhhHHHHHhhhhHHHHHHHHHHHhh
Q 001374 95 ISAKEDLVKQHTKVAEEA-VSGWEK------------AEAEALALKNHLESVTLSKLTAEDRAAHLDGALKECMRQIRNL 161 (1091)
Q Consensus 95 ~~~kd~lvkqh~kvaeea-v~gwek------------ae~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLKec~~qLr~~ 161 (1091)
..+++.|.++..--..|| |..-|- -.-+-..||+|++++...-..|=-|++.=+--+-+|.-|++-+
T Consensus 76 ~~a~~elq~~ks~~Q~e~~v~a~e~~~~rll~d~i~nLk~se~~lkqQ~~~a~RrE~ilv~rlA~kEQEmqe~~sqi~~l 155 (330)
T KOG2991|consen 76 VMARDELQLRKSWKQYEAYVQALEGKYTRLLSDDITNLKESEEKLKQQQQEAARRENILVMRLATKEQEMQECTSQIQYL 155 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccchhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778777644333333 321111 1133457889999998888888888888888899999999888
Q ss_pred hHHHHHH---HHHHH--HHHhhhHHHHHHHHHHHHHHH---HHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH
Q 001374 162 KEEHEQK---LQDFV--LTKTKQWDKIRLEFEAKIANF---EQELLRSA--------AENATLSRSLQERSNMLIKISEE 225 (1091)
Q Consensus 162 reeqeqk---i~~~~--~~~~~e~e~~~~ELEaKLaEl---EkeLeelk--------aEl~aLeeqLEelqeeI~EL~ee 225 (1091)
+-.|.-- +..++ -...-.|.+++.+++.....+ +.+|...+ .-+-+-.+-|..-+++|..
T Consensus 156 K~qq~Ps~~qlR~~llDPAinl~F~rlK~ele~tk~Klee~QnelsAwkFTPdS~tGK~LMAKCR~L~qENeElG~---- 231 (330)
T KOG2991|consen 156 KQQQQPSVAQLRSTLLDPAINLFFLRLKGELEQTKDKLEEAQNELSAWKFTPDSKTGKMLMAKCRTLQQENEELGH---- 231 (330)
T ss_pred HHhhCcHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeecCCCcchHHHHHHHHHHHHHHHHHHh----
Confidence 8766411 11110 122345666666665543322 22222210 1111222222222222221
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 001374 226 KSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLVRK 305 (1091)
Q Consensus 226 iErlEgEi~LLkERIenlEKEne~LK~EL~~LqeELEiL~EElE~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l~rk 305 (1091)
.-.+|+|.-|.-.+.-.....+.|+.....+-.=++.+.+..+..+..+=.++.++.+-.+.|..|+..+..+.-+|--
T Consensus 232 -q~s~Gria~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~sqav~d 310 (330)
T KOG2991|consen 232 -QASEGRIAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVSQAVGD 310 (330)
T ss_pred -hhhcccHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1245667777777777777777888888888888888888888899999999999999999999999999888888866
Q ss_pred cCCChHHH
Q 001374 306 KLPGPAAL 313 (1091)
Q Consensus 306 ~lpgpaa~ 313 (1091)
+---|+|+
T Consensus 311 ~~~~~~a~ 318 (330)
T KOG2991|consen 311 KKDEVDAI 318 (330)
T ss_pred cccccccc
Confidence 65544443
No 122
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=94.14 E-value=19 Score=44.18 Aligned_cols=218 Identities=17% Similarity=0.233 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 001374 185 LEFEAKIANFEQELLRSAAENATLSRSLQERSNMLI----------KISEEKSQAEAEIELLKGNIEQCEREINSAKYEL 254 (1091)
Q Consensus 185 ~ELEaKLaElEkeLeelkaEl~aLeeqLEelqeeI~----------EL~eeiErlEgEi~LLkERIenlEKEne~LK~EL 254 (1091)
...+..+..+..-|.+.+..+..|..++...+..|. ....++..+...+......+..-..--..|+..+
T Consensus 305 ~~V~~~~~~l~~~l~k~ke~n~~L~~Eie~V~~sY~l~e~e~~~vr~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l 384 (570)
T COG4477 305 NVVEENLPILPDYLEKAKENNEHLKEEIERVKESYRLAETELGSVRKFEKELKELESVLDEILENIEAQEVAYSELQDNL 384 (570)
T ss_pred HHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 334444444455566666666666666555544432 2333444444455555555555555556677777
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhccCCC-hHHHHHHHHHHhhhcCCcCCccc
Q 001374 255 HIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLR-GLVRKKLPG-PAALAQMKMEVESLGRDYGDSRL 332 (1091)
Q Consensus 255 ~~LqeELEiL~EElE~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr-~l~rk~lpg-paa~a~mk~ev~~l~~~~~~~r~ 332 (1091)
..+.+.+..++.+.......+..+.+.-.+....+..+...+.... -|-+..||| |--+-.|+...+.--++... ++
T Consensus 385 ~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~eikR~mek~nLPGlPe~~l~l~~~~~~~i~~l~~-eL 463 (570)
T COG4477 385 EEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHEIKRYMEKSNLPGLPETFLSLFFTAGHEIQDLMK-EL 463 (570)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHhhhhHHHHHHH-HH
Confidence 7777777777777777778888888888888888888888776554 455678999 88777776544321111110 11
Q ss_pred cCCCCCCCCCCCCCCcccchhhhHhhhhhhHHHHHHHHhHHHHHHHHHHHHHhhhhhHHHH---HHHHHHhhhhHHHHHH
Q 001374 333 KRSPVKPTSPHLSPVSEFSLDNVQKFQKENEFLTERLLAMEEETKMLKEALAKRNSELQAS---RNLCAKTASKLQSLEA 409 (1091)
Q Consensus 333 rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~rl~~~eee~k~lke~l~~k~~elq~s---r~~~a~t~~kl~~~e~ 409 (1091)
.+-| .+| -....-.+-.+..+..+++++-.+-+--.=-.-=||++ |.-++.-+..|+..|.
T Consensus 464 se~p-----inm-----------~~v~~~v~~a~~~m~~l~~~t~e~ve~a~LaE~lIQY~NRYRs~~~~v~~~l~eAe~ 527 (570)
T COG4477 464 SEVP-----INM-----------EAVSALVDIATEDMNTLEDETEEVVENAVLAEQLIQYGNRYRSRNAEVAKSLNEAER 527 (570)
T ss_pred hhcC-----CcH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 1111 111 11122223344555555555443322111111226766 5677788888888888
Q ss_pred HHhhhcccCC
Q 001374 410 QMQTSTQQKS 419 (1091)
Q Consensus 410 q~~~~~~~~~ 419 (1091)
.+....+++.
T Consensus 528 lF~~~~dY~~ 537 (570)
T COG4477 528 LFENAFDYDA 537 (570)
T ss_pred HHHHhcchhH
Confidence 8875555444
No 123
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=94.10 E-value=6.2 Score=43.46 Aligned_cols=179 Identities=13% Similarity=0.140 Sum_probs=89.9
Q ss_pred hhhHHHHHHHHHHHHhHHHHhhhhhhHHHHHhhhhHH---HHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 001374 114 SGWEKAEAEALALKNHLESVTLSKLTAEDRAAHLDGA---LKECMRQIRNLKEEHEQKLQDFVLTKTKQWDKIRLEFEAK 190 (1091)
Q Consensus 114 ~gwekae~e~~~lK~~Le~~~~q~~~le~rv~hLd~a---LKec~~qLr~~reeqeqki~~~~~~~~~e~e~~~~ELEaK 190 (1091)
.+=++....+..+++.++.+......+...+..+-.+ ...-.. ..--++=+++|..+ ...-.+|..-...+..+
T Consensus 31 ~~~~~~~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~~~~~~~~~~--~~s~~eLeq~l~~~-~~~L~~~q~~l~~~~~~ 107 (240)
T PF12795_consen 31 DEIKKQKKRAAEYQKQIDQAPKEIRELQKELEALKSQDAPSKEILA--NLSLEELEQRLSQE-QAQLQELQEQLQQENSQ 107 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhccccccccCcc--cCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 3344445677778888888888877777777766443 111111 11122333444444 23334444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 191 IANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNM 270 (1091)
Q Consensus 191 LaElEkeLeelkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIenlEKEne~LK~EL~~LqeELEiL~EElE~ 270 (1091)
+..+......+...+......++.....+..... .+.-.+...+...+.-+...|..++..++.++.......+.
T Consensus 108 l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~~~~-----~~~~~l~~a~~~~l~ae~~~l~~~~~~le~el~s~~~rq~L 182 (240)
T PF12795_consen 108 LIEIQTRPERAQQQLSEARQRLQEIRNQLQNLPP-----NGESPLSEAQRWLLQAELAALEAQIEMLEQELLSNNNRQEL 182 (240)
T ss_pred HHHHHccHHHHHHHHHHHHHHHHHHHHHHhccCC-----CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHH
Confidence 4444444444444444444433333332221100 00012235555666666666666666666666666666666
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001374 271 SMRSAEAANKQHMEGVKKIAKLEAECQRLR 300 (1091)
Q Consensus 271 s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr 300 (1091)
.+...+.+..++..+...+..|+..+...+
T Consensus 183 ~~~qrdl~~~~~~~l~~~l~~Lq~~ln~~R 212 (240)
T PF12795_consen 183 LQLQRDLLKARIQRLQQQLQALQNLLNQKR 212 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 655555555555555555555555554443
No 124
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=94.03 E-value=11 Score=46.64 Aligned_cols=100 Identities=22% Similarity=0.280 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hHHHHHHHHHHHHhHHHHHHH
Q 001374 808 LEEFEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKS-------NSLAETQLKCMAESYRSLETH 880 (1091)
Q Consensus 808 ~EelEqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS-------~selEeqLk~~~e~ledLesr 880 (1091)
.|.+..|+-.++.+.-...-+.++++.-...|++++.-|++-..+|-..++- ...+|+|.-.+.....+|.-+
T Consensus 110 QerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQqellsrtsLETqKlDLmaevSeLKLk 189 (861)
T KOG1899|consen 110 QERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQELLSRTSLETQKLDLMAEVSELKLK 189 (861)
T ss_pred HHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHHHhhhhHHHHHhHHHHHHHHhHHH
Confidence 3567777888888877777788888777777777777777766666554443 334777777777778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001374 881 AQELEAEVNLLRAKIESLENELQDEKM 907 (1091)
Q Consensus 881 L~eLeaElkeLqeKVesLE~ELe~ek~ 907 (1091)
+..++.+-.+.+.|+..-+..++.+++
T Consensus 190 ltalEkeq~e~E~K~R~se~l~qevn~ 216 (861)
T KOG1899|consen 190 LTALEKEQNETEKKLRLSENLMQEVNQ 216 (861)
T ss_pred HHHHHHHhhhHHHHHHhHHHHHHHHHH
Confidence 888888787777777777777777663
No 125
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=93.90 E-value=8.8 Score=45.40 Aligned_cols=130 Identities=12% Similarity=0.129 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 001374 165 HEQKLQDFVLTKTKQWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCE 244 (1091)
Q Consensus 165 qeqki~~~~~~~~~e~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIenlE 244 (1091)
|-.+.-.|+.+...|+..++.+|+.++.....+ +......|..|...+....+-+.+.+-|+++-.
T Consensus 241 Q~~~vn~al~~Ri~et~~ak~~Le~ql~~~~~e--------------i~~~e~~i~~L~~ai~~k~~~lkvaqTRL~~R~ 306 (384)
T PF03148_consen 241 QADAVNAALRKRIHETQEAKNELEWQLKKTLQE--------------IAEMEKNIEDLEKAIRDKEGPLKVAQTRLENRT 306 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH--------------HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHh
Confidence 333444555555555555555555555555444 444445555555556666666777777776532
Q ss_pred H----------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhhhccCC
Q 001374 245 R----------EINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQR---LRGLVRKKLP 308 (1091)
Q Consensus 245 K----------Ene~LK~EL~~LqeELEiL~EElE~s~qsaeal~KQ~lEl~KKLaKLEaEcqr---Lr~l~rk~lp 308 (1091)
. =...|-.|+..+..-+..+...+......+..+...+..+...|.-...-+.- --+.+|+++|
T Consensus 307 ~RP~vElcrD~~q~~L~~Ev~~l~~~i~~L~~~L~~a~~~l~~L~~~~~~Le~di~~K~~sL~iD~~~c~~~R~~~~ 383 (384)
T PF03148_consen 307 QRPNVELCRDPPQYGLIEEVKELRESIEALQEKLDEAEASLQKLERTRLRLEEDIAVKNNSLFIDRERCMQLRRRYP 383 (384)
T ss_pred cCCchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCC
Confidence 2 12346666777777777777777777777777777777777766666655532 2245677766
No 126
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.85 E-value=5 Score=45.31 Aligned_cols=120 Identities=17% Similarity=0.126 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-
Q 001374 181 DKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSK- 259 (1091)
Q Consensus 181 e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIenlEKEne~LK~EL~~Lqe- 259 (1091)
++.-.+++..+..++.+++.+..++..+...+++.+..+.++..++.+++++|..++++|. .+.+.|+.+.+..+.
T Consensus 37 ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~---~r~~~l~~raRAmq~n 113 (265)
T COG3883 37 DSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIV---ERQELLKKRARAMQVN 113 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHc
Confidence 3334445555555566666666666666666666666666666667777777777766666 334445554444333
Q ss_pred ---------------------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001374 260 ---------------------ELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLV 303 (1091)
Q Consensus 260 ---------------------ELEiL~EElE~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l~ 303 (1091)
++..+..-.++...-+......+..+..+-..++..+..+.++.
T Consensus 114 G~~t~Yidvil~SkSfsD~IsRvtAi~~iv~aDk~ile~qk~dk~~Le~kq~~l~~~~e~l~al~ 178 (265)
T COG3883 114 GTATSYIDVILNSKSFSDLISRVTAISVIVDADKKILEQQKEDKKSLEEKQAALEDKLETLVALQ 178 (265)
T ss_pred CChhHHHHHHHccCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555556666666666666666666666666554
No 127
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=93.80 E-value=4 Score=45.30 Aligned_cols=84 Identities=18% Similarity=0.242 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 219 LIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQR 298 (1091)
Q Consensus 219 I~EL~eeiErlEgEi~LLkERIenlEKEne~LK~EL~~LqeELEiL~EElE~s~qsaeal~KQ~lEl~KKLaKLEaEcqr 298 (1091)
+..+..++...+.++..+..+++...+++...+..+..+...+..+...+...............+....+...+..+..
T Consensus 58 ~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 137 (302)
T PF10186_consen 58 IQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQ 137 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555555555555555555555555555554433333334444444444444444444444
Q ss_pred Hhhh
Q 001374 299 LRGL 302 (1091)
Q Consensus 299 Lr~l 302 (1091)
+..+
T Consensus 138 l~~~ 141 (302)
T PF10186_consen 138 LQSQ 141 (302)
T ss_pred HHHH
Confidence 3333
No 128
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=93.77 E-value=20 Score=43.21 Aligned_cols=142 Identities=13% Similarity=0.232 Sum_probs=71.8
Q ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 148 DGALKECMRQIRNLKEEHEQKLQDFVLTKTKQWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKS 227 (1091)
Q Consensus 148 d~aLKec~~qLr~~reeqeqki~~~~~~~~~e~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLEelqeeI~EL~eeiE 227 (1091)
|=||.|..+-|....-.|+-+|++. .--..-|+.++.+++-+..+ ...+-.-+.++...|.+|.+.+-
T Consensus 312 dmaLNEvL~kLk~tn~kQq~~IqdL--------q~sN~yLe~kvkeLQ~k~~k----QqvfvDiinkLk~niEeLIedKY 379 (527)
T PF15066_consen 312 DMALNEVLQKLKHTNRKQQNRIQDL--------QCSNLYLEKKVKELQMKITK----QQVFVDIINKLKENIEELIEDKY 379 (527)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHh--------hhccHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHHHHHhHh
Confidence 5679999999999999999999986 33445566666666544322 22233334444444444444444
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001374 228 QAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRG 301 (1091)
Q Consensus 228 rlEgEi~LLkERIenlEKEne~LK~EL~~LqeELEiL~EElE~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~ 301 (1091)
++-=+.+-....++++..-.+..+..|..-..+.+.+.-++.......-.++..|..-.+.-.+.-..|-.+..
T Consensus 380 ~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksvsqclEmdk 453 (527)
T PF15066_consen 380 RVILEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSVSQCLEMDK 453 (527)
T ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 44434444444444444444444444444444444444444433333333444333333333333333333333
No 129
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=93.74 E-value=26 Score=44.45 Aligned_cols=131 Identities=18% Similarity=0.177 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 191 IANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNM 270 (1091)
Q Consensus 191 LaElEkeLeelkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIenlEKEne~LK~EL~~LqeELEiL~EElE~ 270 (1091)
...+..++..+.+....+...+..+.+....++.....+..++..+...++...+....+...+..++.+++.....+..
T Consensus 505 k~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~ 584 (698)
T KOG0978|consen 505 KSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQ 584 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555555555555555555555555666666666666666666666666666666666666666666666
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh---ccCCChHHHHHHHHHHh
Q 001374 271 SMRSAEAANKQHMEGVKKIAKLEAECQRLRGLVR---KKLPGPAALAQMKMEVE 321 (1091)
Q Consensus 271 s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l~r---k~lpgpaa~a~mk~ev~ 321 (1091)
++.....+...+.-...+...+++++.+++.-++ +.--|+-|.+.|..|+.
T Consensus 585 i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~~~~~s~d~~L~EElk 638 (698)
T KOG0978|consen 585 IQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKKEESGASADEVLAEELK 638 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccHHHHHHHH
Confidence 6666666666666666677777777766665442 23334444444544444
No 130
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=93.73 E-value=14 Score=44.51 Aligned_cols=22 Identities=18% Similarity=0.289 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001374 278 ANKQHMEGVKKIAKLEAECQRL 299 (1091)
Q Consensus 278 l~KQ~lEl~KKLaKLEaEcqrL 299 (1091)
+..++.+....+..+++.+...
T Consensus 289 ~~~~l~~~~~~l~~~~~~l~~a 310 (457)
T TIGR01000 289 VKQEITDLNQKLLELESKIKSL 310 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444333
No 131
>PRK11281 hypothetical protein; Provisional
Probab=93.72 E-value=22 Score=47.54 Aligned_cols=181 Identities=14% Similarity=0.107 Sum_probs=76.2
Q ss_pred HHHhhhhHHH---HHHHHHHHHhHHHHhhhhhhHHHHHhhhhHHHHHHH-HHHHh-hhHHHHHHHHHHHHHHhhhHHHHH
Q 001374 110 EEAVSGWEKA---EAEALALKNHLESVTLSKLTAEDRAAHLDGALKECM-RQIRN-LKEEHEQKLQDFVLTKTKQWDKIR 184 (1091)
Q Consensus 110 eeav~gweka---e~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLKec~-~qLr~-~reeqeqki~~~~~~~~~e~e~~~ 184 (1091)
+.|..-+.++ +.++..++++++++.++...+..++..|-.....-. +.+.. .-.+-|+++-+. ...-++|+..-
T Consensus 66 ~~tL~~L~qi~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~~~~~~~~~Sl~qLEq~L~q~-~~~Lq~~Q~~L 144 (1113)
T PRK11281 66 EQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLSLRQLESRLAQT-LDQLQNAQNDL 144 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHHH-HHHHHHHHHHH
Confidence 4444444444 466777788888777776666666543322111000 00000 001123333322 22222333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 185 LEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKS-QAEAEIELLKGNIEQCEREINSAKYELHIVSKELEI 263 (1091)
Q Consensus 185 ~ELEaKLaElEkeLeelkaEl~aLeeqLEelqeeI~EL~eeiE-rlEgEi~LLkERIenlEKEne~LK~EL~~LqeELEi 263 (1091)
..+..++..++.+.++.++.+......+++.++.+......-+ =.+.+...++.+...++.++..++.++.......+.
T Consensus 145 a~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~~l~~~~~~~~~~l~~~~~l~~l 224 (1113)
T PRK11281 145 AEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQRKSLEGNTQLQDL 224 (1113)
T ss_pred HHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 3344444444444444444444444433333332221100000 002233444444444444455555555555555555
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 001374 264 RNEEKNMSMRSAEAANKQHMEGVKKIAK 291 (1091)
Q Consensus 264 L~EElE~s~qsaeal~KQ~lEl~KKLaK 291 (1091)
....+++....++.++.+...++..++.
T Consensus 225 ~~~q~d~~~~~~~~~~~~~~~lq~~in~ 252 (1113)
T PRK11281 225 LQKQRDYLTARIQRLEHQLQLLQEAINS 252 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555444444444443
No 132
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=93.60 E-value=4.1 Score=43.43 Aligned_cols=122 Identities=30% Similarity=0.333 Sum_probs=88.4
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhH
Q 001374 806 FSLEEFEELKLEKDNLATDLARCTENLEMTKSQL-----------YETEQLLAEVKAQLASAQKSNSLAETQLKCMAESY 874 (1091)
Q Consensus 806 ~s~EelEqLEsEkeelE~eLee~~eklEel~~qL-----------qelE~~LeELesQLesLqeS~selEeqLk~~~e~l 874 (1091)
.+-+.|.+|+-|...++..+..+......-..-+ .++...-.+|..+|..++...+.+|.||+.|....
T Consensus 8 ~LQeKIrrLELER~qAe~nl~~LS~et~~yk~vl~~~~~~~~~~~~e~~~q~~dl~~qL~aAEtRCslLEKQLeyMRkmv 87 (178)
T PF14073_consen 8 NLQEKIRRLELERSQAEDNLKQLSRETSHYKKVLQSEQNERERAHQELSKQNQDLSSQLSAAETRCSLLEKQLEYMRKMV 87 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHhhhhhcccchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777888888777777765544332222222 12223456899999999999999999999999887
Q ss_pred HHHHHHHHH-H-------------HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhh
Q 001374 875 RSLETHAQE-L-------------EAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNE 927 (1091)
Q Consensus 875 edLesrL~e-L-------------eaElkeLqeKVesLE~ELe~ek~~~eEleaK~~eLEeQLe~~~ 927 (1091)
...+..-+. + ..++.....|++.|+.|.-.+...-.-.+.||..|+++|..=.
T Consensus 88 ~~ae~er~~~le~q~~l~~e~~~~~~~~~~klekLe~LE~E~~rLt~~Q~~ae~Ki~~LE~KL~eEe 154 (178)
T PF14073_consen 88 ESAEKERNAVLEQQVSLQRERQQDQSELQAKLEKLEKLEKEYLRLTATQSLAETKIKELEEKLQEEE 154 (178)
T ss_pred HHHHHhhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776643322 1 1455667789999999999999999999999999999998544
No 133
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=93.55 E-value=13 Score=40.33 Aligned_cols=47 Identities=21% Similarity=0.292 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 809 EEFEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLAS 855 (1091)
Q Consensus 809 EelEqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLes 855 (1091)
+++..|+..-...+..+.++..+...+..-|..++..+.+|+.++..
T Consensus 34 eei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~ 80 (201)
T PF13851_consen 34 EEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKN 80 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444444444443
No 134
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=93.38 E-value=19 Score=41.63 Aligned_cols=202 Identities=24% Similarity=0.235 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHHhhhhcchhhHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhHHHHhhhhhhHHHHHhhhhHHHH--HHHH
Q 001374 79 EQIKELNEKLSAANSEISAKEDLVKQHTKVAEEAVSGWEKAEAEALALKNHLESVTLSKLTAEDRAAHLDGALK--ECMR 156 (1091)
Q Consensus 79 ~~~k~l~ekls~a~~~~~~kd~lvkqh~kvaeeav~gwekae~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLK--ec~~ 156 (1091)
..=+.+++|+..+|.+|.++=+ +| -.--.|.-.|-..|+..|.....|- +-|=.|++..+| +...
T Consensus 103 ~kR~el~~kFq~~L~dIq~~~e---e~-------~~~~~k~~~eN~~L~eKlK~l~eQy---e~rE~~~~~~~k~keLE~ 169 (309)
T PF09728_consen 103 EKRKELSEKFQATLKDIQAQME---EQ-------SERNIKLREENEELREKLKSLIEQY---ELREEHFEKLLKQKELEV 169 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---hc-------cchhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhHHHHHH
Confidence 3345677778788887755321 11 1222233345556677777777663 455556666654 4455
Q ss_pred HHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 157 QIRNLKEEHEQKLQDFVLTKTKQWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELL 236 (1091)
Q Consensus 157 qLr~~reeqeqki~~~~~~~~~e~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LL 236 (1091)
||..+|=++..........+......+-..--.++..+...-..++.++ .-..+.+.+....+.+...-+.-.
T Consensus 170 Ql~~AKl~q~~~~~~~e~~k~~~~~~~~l~~~~~~~~~~~~E~~Lr~QL-------~~Y~~Kf~efq~tL~kSNe~F~tf 242 (309)
T PF09728_consen 170 QLAEAKLEQQQEEAEQEKEKAKQEKEILLEEAAQVQTLKETEKELREQL-------NLYSEKFEEFQDTLNKSNEVFETF 242 (309)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhHHHHHHH
Confidence 6666666665554444333322222211111113333333334444444 444444444444444444444444
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001374 237 KGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLR 300 (1091)
Q Consensus 237 kERIenlEKEne~LK~EL~~LqeELEiL~EElE~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr 300 (1091)
+..++...+.+..|..+-..+....+.-+..+-..........+++....+++.+|+.-|+.|+
T Consensus 243 k~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~LcRaLQ 306 (309)
T PF09728_consen 243 KKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEKLCRALQ 306 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444444444444444444444444444444444445566667777777888888887765
No 135
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=93.25 E-value=27 Score=42.98 Aligned_cols=156 Identities=19% Similarity=0.132 Sum_probs=89.2
Q ss_pred hhHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 138 LTAEDRAAHLDGALKECMRQIRNLKEEHEQKLQDFVLTKTKQWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSN 217 (1091)
Q Consensus 138 ~~le~rv~hLd~aLKec~~qLr~~reeqeqki~~~~~~~~~e~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLEelqe 217 (1091)
..|++|+.-||.||+-.. +.-...+.. ..+.+-.|+..+..|+.+.. +...+.....+...+...++-+..
T Consensus 158 ~sL~ekl~lld~al~~~~-------~~~~~~~~~-fl~rtl~~e~~~~~L~~~~~-A~~~~~~~l~~~~e~~~~l~l~~~ 228 (511)
T PF09787_consen 158 RSLQEKLSLLDEALKRED-------GNAITAVVE-FLKRTLKKEIERQELEERPK-ALRHYIEYLRESGELQEQLELLKA 228 (511)
T ss_pred hhHHHHHHHHHHHHHhcC-------ccHHHHHHH-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666665432 222222223 35677778888888888877 555677777777777777777766
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-HHHH-HH-----HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 001374 218 MLIKISEEKSQAEAEIELLKGNIEQCEREINSAKY-ELHI-VS-----KELEIRNEEKNMSMRSAEAANKQHMEGVKKIA 290 (1091)
Q Consensus 218 eI~EL~eeiErlEgEi~LLkERIenlEKEne~LK~-EL~~-Lq-----eELEiL~EElE~s~qsaeal~KQ~lEl~KKLa 290 (1091)
.......+...+..... --++..++.++.|+. -+.. .. -+++.+..+++..+..+..+..|+..+...+.
T Consensus 229 ~~~~~~~el~~Yk~kA~---~iLq~kEklI~~LK~~~~~~~~~~~~~~~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~ 305 (511)
T PF09787_consen 229 EGESEEAELQQYKQKAQ---RILQSKEKLIESLKEGCLEEGFDSSTNSIELEELKQERDHLQEEIQLLERQIEQLRAELQ 305 (511)
T ss_pred HhHHHHHHHHHHHHHHH---HHhcCHHHHHHHHHhcccccccccccchhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666553321 123444555666655 2211 11 12555666666666666666666666666666
Q ss_pred HHHHHHHHHhhhhhc
Q 001374 291 KLEAECQRLRGLVRK 305 (1091)
Q Consensus 291 KLEaEcqrLr~l~rk 305 (1091)
..+.++..-....|+
T Consensus 306 d~e~~~~~~~~~~~~ 320 (511)
T PF09787_consen 306 DLEAQLEGEQESFRE 320 (511)
T ss_pred HHHHHHHhHHHHHHH
Confidence 666555444433333
No 136
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=93.22 E-value=17 Score=47.44 Aligned_cols=154 Identities=18% Similarity=0.267 Sum_probs=63.3
Q ss_pred HHHHhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 141 EDRAAHLDGALKECMRQIRNLKEEHEQKLQDFVLTKTK---QWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSN 217 (1091)
Q Consensus 141 e~rv~hLd~aLKec~~qLr~~reeqeqki~~~~~~~~~---e~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLEelqe 217 (1091)
...+.||..+.-.-++-...+|+.+.-+-.=-++.+.+ +|++...++.+ +......++.++..+.+.......
T Consensus 201 ~~~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l~~k~~~v~y~~~~~ey~~----~k~~~~r~k~~~r~l~k~~~pi~~ 276 (1072)
T KOG0979|consen 201 TEKLNRLEDEIDKLEKDVERVRERERKKSKIELLEKKKKWVEYKKHDREYNA----YKQAKDRAKKELRKLEKEIKPIED 276 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHhhhHHHHH----HHHHHHHHHHHHHHHHHhhhhhhh
Confidence 44455555555555555566665554322222232222 33333333222 222233344444444444444433
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 218 MLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQ 297 (1091)
Q Consensus 218 eI~EL~eeiErlEgEi~LLkERIenlEKEne~LK~EL~~LqeELEiL~EElE~s~qsaeal~KQ~lEl~KKLaKLEaEcq 297 (1091)
.+.+|..++....+++....--+..........-..+.....+++.....++.+++..+..++.+....+.|..++++++
T Consensus 277 ~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el~ 356 (1072)
T KOG0979|consen 277 KKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAELQ 356 (1072)
T ss_pred hhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 33333333333333333333333333333333333333334444444444444444444444444444444444444444
Q ss_pred H
Q 001374 298 R 298 (1091)
Q Consensus 298 r 298 (1091)
.
T Consensus 357 ~ 357 (1072)
T KOG0979|consen 357 E 357 (1072)
T ss_pred h
Confidence 3
No 137
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=93.22 E-value=0.23 Score=62.73 Aligned_cols=40 Identities=23% Similarity=0.277 Sum_probs=29.3
Q ss_pred hhhhHHHHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHhh
Q 001374 359 QKENEFLTERLLAMEEETKMLKEALAKRNSELQASRNLCAKTA 401 (1091)
Q Consensus 359 ~~~~~~l~~rl~~~eee~k~lke~l~~k~~elq~sr~~~a~t~ 401 (1091)
.+++.-|-..|...+--+..||++.++|-.|.- -.|....
T Consensus 605 ~~e~~~l~~~~~~~ekr~~RLkevf~~ks~eFr---~av~~ll 644 (722)
T PF05557_consen 605 EKEIAELKAELASAEKRNQRLKEVFKAKSQEFR---EAVYSLL 644 (722)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHh
Confidence 445666778888888899999999999988775 4444433
No 138
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=93.09 E-value=32 Score=43.42 Aligned_cols=47 Identities=17% Similarity=0.262 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHhhhcC
Q 001374 278 ANKQHMEGVKKIAKLEAECQRLRGLVRKKLPGPAALAQMKMEVESLGR 325 (1091)
Q Consensus 278 l~KQ~lEl~KKLaKLEaEcqrLr~l~rk~lpgpaa~a~mk~ev~~l~~ 325 (1091)
...+...+..++.+++.++..+...++. .|++..+.++..+++.+.+
T Consensus 389 ~~~~~~~~~~~~~~~e~el~~l~~~l~~-~~~~e~i~~l~e~l~~l~~ 435 (650)
T TIGR03185 389 LQDAKSQLLKELRELEEELAEVDKKIST-IPSEEQIAQLLEELGEAQN 435 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHH
Confidence 4566777788888888888888777764 4777888888877776543
No 139
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=93.07 E-value=9 Score=42.76 Aligned_cols=168 Identities=20% Similarity=0.202 Sum_probs=98.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 001374 807 SLEEFEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEA 886 (1091)
Q Consensus 807 s~EelEqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selEeqLk~~~e~ledLesrL~eLea 886 (1091)
+.+.+.+++.+.......|......+..+...++.++..-..|+.....+...+..++.+..........|...+..+..
T Consensus 10 le~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~ 89 (246)
T PF00769_consen 10 LEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEA 89 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557777777777777777777777777777777777777777777777777777777776666666677777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhh----hh-----------------cccchhHhh------
Q 001374 887 EVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNEN----CA-----------------VCSSEADEN------ 939 (1091)
Q Consensus 887 ElkeLqeKVesLE~ELe~ek~~~eEleaK~~eLEeQLe~~~~----~~-----------------lk~q~dkdL------ 939 (1091)
++..+...+..-+.|...++..+.........-..+|..+-. .. .......++
T Consensus 90 ~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~L~~~~~~~~~p~~~~v~~~~~~~~~~~~~~~~~~s~dl~~~~~~ 169 (246)
T PF00769_consen 90 EIARLEEESERKEEEAEELQEELEEAREDEEEAKEELLEVMSAPPPPPHHPVAEPDEGDEDENDEENSEYSADLETDGDM 169 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HTTS--GGGS------------------EEEE---T-T-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCCCCCCCccccccccccccccccccccc
Confidence 777777777777777777777777666666666666622211 00 000011111
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 001374 940 KIKQDRDLAAAAERLAECQETILLLGKQLKSLRPQ 974 (1091)
Q Consensus 940 KikqEkEIaaAeeKLAEcQeTI~sLEKQLKsLa~q 974 (1091)
+...+++-....+|=.-.|..+..|..+|..++..
T Consensus 170 ~~~sEeeR~t~~EKnk~lq~QL~~L~~EL~~~kde 204 (246)
T PF00769_consen 170 KDRSEEERVTYAEKNKRLQEQLKELKSELEQLKDE 204 (246)
T ss_dssp -TCGGGC---HHHH-HHHHHHHHHHHHHHHTTB-C
T ss_pred cchhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhh
Confidence 11213344455567777888888999998888764
No 140
>PRK01156 chromosome segregation protein; Provisional
Probab=93.05 E-value=38 Score=44.17 Aligned_cols=17 Identities=35% Similarity=0.407 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001374 834 MTKSQLYETEQLLAEVK 850 (1091)
Q Consensus 834 el~~qLqelE~~LeELe 850 (1091)
.+..++..++..+.+++
T Consensus 591 e~~~~l~~l~~~l~~le 607 (895)
T PRK01156 591 EIKKQLNDLESRLQEIE 607 (895)
T ss_pred HHHHHHHHHHhhHHHHH
Confidence 33333333333333333
No 141
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=93.02 E-value=37 Score=43.94 Aligned_cols=150 Identities=13% Similarity=0.134 Sum_probs=66.8
Q ss_pred HHHHHHHHHhhhHHHHHHH--HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
Q 001374 151 LKECMRQIRNLKEEHEQKL--QDFVLTKTKQWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQ-------ERSNMLIK 221 (1091)
Q Consensus 151 LKec~~qLr~~reeqeqki--~~~~~~~~~e~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLE-------elqeeI~E 221 (1091)
|+.-..||+..|.+-++-. .+-...+-..|+.--.++..++.++...-..+..++.....+++ ...+.+.+
T Consensus 391 Lr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~ 470 (980)
T KOG0980|consen 391 LRNELAQLLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTN 470 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4444445555544444222 23334444455554445555555554444444433433333333 33334444
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001374 222 ISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRG 301 (1091)
Q Consensus 222 L~eeiErlEgEi~LLkERIenlEKEne~LK~EL~~LqeELEiL~EElE~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~ 301 (1091)
+...++++..+...+.-+.+...+-.+.++.|+..+..+++.+...+..+ ...+......+..+..+-.++-+
T Consensus 471 L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~-------~qs~~~~~~~l~~~l~~KD~~~~ 543 (980)
T KOG0980|consen 471 LNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRTLSNL-------AQSHNNQLAQLEDLLKQKDRLAA 543 (980)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-------HHHHHHHHHHHHHHHHhhHHHHH
Confidence 44444444444444444555555555555555555555554444443333 22233333333344444444444
Q ss_pred hhhccC
Q 001374 302 LVRKKL 307 (1091)
Q Consensus 302 l~rk~l 307 (1091)
.+++++
T Consensus 544 ~~~~~~ 549 (980)
T KOG0980|consen 544 ELVARE 549 (980)
T ss_pred HHHHHH
Confidence 444444
No 142
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=92.94 E-value=7.9 Score=46.71 Aligned_cols=26 Identities=12% Similarity=0.193 Sum_probs=19.9
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 805 KFSLEEFEELKLEKDNLATDLARCTE 830 (1091)
Q Consensus 805 ~~s~EelEqLEsEkeelE~eLee~~e 830 (1091)
.|...++.+++.++...+..+..++.
T Consensus 164 ~fl~~ql~~~~~~L~~ae~~l~~f~~ 189 (498)
T TIGR03007 164 RFIDEQIKTYEKKLEAAENRLKAFKQ 189 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667788888888888888887764
No 143
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=92.92 E-value=1.7 Score=50.04 Aligned_cols=91 Identities=16% Similarity=0.167 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 001374 838 QLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVNLLRAKIESLENELQDEKMSHHNAMAKCK 917 (1091)
Q Consensus 838 qLqelE~~LeELesQLesLqeS~selEeqLk~~~e~ledLesrL~eLeaElkeLqeKVesLE~ELe~ek~~~eEleaK~~ 917 (1091)
.+..+...+..|+.+...+...+..++.+-..+..++..++.++..+..+-.+.-...+.+.-++.........+.+++.
T Consensus 44 ~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~ 123 (314)
T PF04111_consen 44 DIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYE 123 (314)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555556666666666666677777777777777888888888888888888899999
Q ss_pred HHHHHHHhhhh
Q 001374 918 ELEEQLQRNEN 928 (1091)
Q Consensus 918 eLEeQLe~~~~ 928 (1091)
....+|.+...
T Consensus 124 ~~~~~L~~L~k 134 (314)
T PF04111_consen 124 YASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHCHHT
T ss_pred HHHHHHHHHHh
Confidence 99999998765
No 144
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.90 E-value=25 Score=42.38 Aligned_cols=90 Identities=18% Similarity=0.196 Sum_probs=47.9
Q ss_pred HHHHhhHHHHHHHhhhhHHHHHHHHHHHHhHHHHhhhhhhHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhh
Q 001374 100 DLVKQHTKVAEEAVSGWEKAEAEALALKNHLESVTLSKLTAEDRAAHLDGALKECMRQIRNLKEEHEQKLQDFVLTKTKQ 179 (1091)
Q Consensus 100 ~lvkqh~kvaeeav~gwekae~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLKec~~qLr~~reeqeqki~~~~~~~~~e 179 (1091)
...|||.-.-.++=+|--+++-+...+.+.|-....-..+|-|- -.-+.+|...-.+-.+++.+. +++
T Consensus 248 ae~kqh~v~~~ales~~sq~~e~~selE~llklkerl~e~l~dg--------eayLaKL~~~l~~~~~~~~~l----tqq 315 (521)
T KOG1937|consen 248 AEYKQHLVEYKALESKRSQFEEQNSELEKLLKLKERLIEALDDG--------EAYLAKLMGKLAELNKQMEEL----TQQ 315 (521)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhHHHHHHhcCCh--------HhHHHHHHHHHHHHHHHHHHH----HHH
Confidence 34578876666666777777655555543332222111111110 112233333333333344333 699
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001374 180 WDKIRLEFEAKIANFEQELLRS 201 (1091)
Q Consensus 180 ~e~~~~ELEaKLaElEkeLeel 201 (1091)
|++.|.-+..+...+...+...
T Consensus 316 wed~R~pll~kkl~Lr~~l~~~ 337 (521)
T KOG1937|consen 316 WEDTRQPLLQKKLQLREELKNL 337 (521)
T ss_pred HHHHhhhHHHHHHHHHHHHhcc
Confidence 9999999998888775554433
No 145
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=92.83 E-value=32 Score=42.79 Aligned_cols=88 Identities=28% Similarity=0.327 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHhhhhhccCCChHHH----HHHHHHHhhhcCCcCCccccCCCCCCCCCCCCCCcccchhhhHhhhhh
Q 001374 286 VKKIAKLEAECQRLRGLVRKKLPGPAAL----AQMKMEVESLGRDYGDSRLKRSPVKPTSPHLSPVSEFSLDNVQKFQKE 361 (1091)
Q Consensus 286 ~KKLaKLEaEcqrLr~l~rk~lpgpaa~----a~mk~ev~~l~~~~~~~r~rr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (1091)
-..|.+.++.+..+..|.||--|-|..+ .+|+.|+..|-.
T Consensus 296 p~~L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el~~L~~------------------------------------ 339 (557)
T COG0497 296 PNRLEEVEERLFALKSLARKYGVTIEDLLEYLDKIKEELAQLDN------------------------------------ 339 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhh------------------------------------
Confidence 3468889999999999999988866555 567777765431
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHhhh
Q 001374 362 NEFLTERLLAMEEETKMLKEALAKRNSELQASRNLCAKTASKLQSLEAQMQTS 414 (1091)
Q Consensus 362 ~~~l~~rl~~~eee~k~lke~l~~k~~elq~sr~~~a~t~~kl~~~e~q~~~~ 414 (1091)
.-+.+..+|.+.+.|++-+-+....|-..|-.+|+...+ .+..+|+.+
T Consensus 340 ---~~~~~~~Le~~~~~l~~~~~~~A~~Ls~~R~~~A~~L~~--~v~~eL~~L 387 (557)
T COG0497 340 ---SEESLEALEKEVKKLKAELLEAAEALSAIRKKAAKELEK--EVTAELKAL 387 (557)
T ss_pred ---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhc
Confidence 134567788999999999999999999999999987764 455666655
No 146
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=92.80 E-value=5.2 Score=40.24 Aligned_cols=94 Identities=17% Similarity=0.213 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 001374 809 EEFEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEV 888 (1091)
Q Consensus 809 EelEqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selEeqLk~~~e~ledLesrL~eLeaEl 888 (1091)
.-++.|.+.+..++.++..++.++..+..+...+...|-.|-.+.+.++. ...++..+...+.+++.++..+-.=+
T Consensus 16 ~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~----~~~~~~~L~~el~~l~~ry~t~Lell 91 (120)
T PF12325_consen 16 QLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRA----LKKEVEELEQELEELQQRYQTLLELL 91 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45788888888888888888888888888887777777776666655543 22233333333444444444333333
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001374 889 NLLRAKIESLENELQDEK 906 (1091)
Q Consensus 889 keLqeKVesLE~ELe~ek 906 (1091)
-+..+.++-|+.++.+.+
T Consensus 92 GEK~E~veEL~~Dv~DlK 109 (120)
T PF12325_consen 92 GEKSEEVEELRADVQDLK 109 (120)
T ss_pred cchHHHHHHHHHHHHHHH
Confidence 333334444444444333
No 147
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=92.51 E-value=4.3 Score=45.22 Aligned_cols=50 Identities=24% Similarity=0.330 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 001374 813 ELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSL 862 (1091)
Q Consensus 813 qLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~se 862 (1091)
.++.++.+++.+|..+.++.......|...+..+..|..++..++..-..
T Consensus 2 ~aEr~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~ 51 (246)
T PF00769_consen 2 EAEREKQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEE 51 (246)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777777777777777777777777777766666663333
No 148
>PF13514 AAA_27: AAA domain
Probab=92.49 E-value=51 Score=44.28 Aligned_cols=307 Identities=21% Similarity=0.246 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcchhhHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhHHHHhhhhhhHHHHHhhhhHH
Q 001374 71 EEQVQTMEEQIKELNEKLSAANSEISAKEDLVKQHTKVAEEAVSGWEKAEAEALALKNHLESVTLSKLTAEDRAAHLDGA 150 (1091)
Q Consensus 71 ~~~~~~~~~~~k~l~ekls~a~~~~~~kd~lvkqh~kvaeeav~gwekae~e~~~lK~~Le~~~~q~~~le~rv~hLd~a 150 (1091)
......+...+..+-..|..+|..+.. +.-+.--...|+..+.-|+.+.+....+..++..+..+...++.++..+..+
T Consensus 624 ~~~~~~~~~~~~~~~~~L~~~l~~~~~-~~~l~~~l~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 702 (1111)
T PF13514_consen 624 RAELEALRARRAAARAALAAALAALGP-AEELAALLEEAEALLEEWEQAAARREQLEEELQQLEQELEEAEAELQEAQEA 702 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHH----------hhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Q 001374 151 LKECMRQIR----------NLKEEHEQKLQDFVLTKTKQWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQE------ 214 (1091)
Q Consensus 151 LKec~~qLr----------~~reeqeqki~~~~~~~~~e~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLEe------ 214 (1091)
+.+...+.. .+--..-...-+. ...-.+.......++.++..++..+..+..+...+-..+..
T Consensus 703 ~~~~~~~w~~~l~~~gL~~~~~~~~~~~~l~~-l~~l~~~~~~~~~~~~ri~~~~~~~~~f~~~~~~L~~~l~~~~~~~~ 781 (1111)
T PF13514_consen 703 LEEWQEEWQEALAELGLPADASPEEALEALEL-LEELREALAEIRELRRRIEQMEADLAAFEEQVAALAERLGPDLPEDP 781 (1111)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCc
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH----HHHHHHHHHHHHHHH
Q 001374 215 RSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSA----EAANKQHMEGVKKIA 290 (1091)
Q Consensus 215 lqeeI~EL~eeiErlEgEi~LLkERIenlEKEne~LK~EL~~LqeELEiL~EElE~s~qsa----eal~KQ~lEl~KKLa 290 (1091)
....+..+............ ++..+..++..++.++..+..++.....++..+...+ ...=...........
T Consensus 782 ~~~~~~~L~~~l~~a~~~~~----~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~~a~~~~~e~l~~~~~~~~~~~ 857 (1111)
T PF13514_consen 782 AEEALEALRARLEEAREAQE----ERERLQEQLEELEEELEQAEEELEELEAELAELLEQAGVEDEEELREAEERAEERR 857 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhhhhhccCCChHHHHHHHHHHhhhcCCcCCccccCCCCCCCCCCCCCCcccchhhhHhhhhhhHHHHHHHH
Q 001374 291 KLEAECQRLRGLVRKKLPGPAALAQMKMEVESLGRDYGDSRLKRSPVKPTSPHLSPVSEFSLDNVQKFQKENEFLTERLL 370 (1091)
Q Consensus 291 KLEaEcqrLr~l~rk~lpgpaa~a~mk~ev~~l~~~~~~~r~rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~rl~ 370 (1091)
.+..++..+...+..-..|. .+.....|++..- ......++.-+..++.
T Consensus 858 ~l~~~~~~~~~~l~~~~~~~-~~~~l~~e~~~~d------------------------------~~~l~~~l~~l~~~l~ 906 (1111)
T PF13514_consen 858 ELREELEDLERQLERQADGL-DLEELEEELEELD------------------------------PDELEAELEELEEELE 906 (1111)
T ss_pred HHHHHHHHHHHHHHhhcCcc-cHHHHHHHhhccC------------------------------HHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHHHHhhhhhHHHHHH--HHHHhhhhHHHHHHHHhhh
Q 001374 371 AMEEETKMLKEALAKRNSELQASRN--LCAKTASKLQSLEAQMQTS 414 (1091)
Q Consensus 371 ~~eee~k~lke~l~~k~~elq~sr~--~~a~t~~kl~~~e~q~~~~ 414 (1091)
.++.+...|.+-++..+.+|..... .|+.....+..++++|...
T Consensus 907 ~l~~~~~~l~~~~~~~~~~l~~l~~~~~~a~l~~e~e~~~a~l~~~ 952 (1111)
T PF13514_consen 907 ELEEELEELQEERAELEQELEALEGDDDAAELEQEREEAEAELEEL 952 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH
No 149
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=92.45 E-value=44 Score=43.40 Aligned_cols=111 Identities=21% Similarity=0.302 Sum_probs=63.4
Q ss_pred hhhhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHH
Q 001374 800 ETTACKFSLEEFEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLET 879 (1091)
Q Consensus 800 ~~~~~~~s~EelEqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selEeqLk~~~e~ledLes 879 (1091)
.+...|.-.++.+.|.-.+++-++++.++....++-++.+.++.-++.=.+++|..+.. .....++...+.+++...
T Consensus 939 RA~~~K~~~edaegL~~tle~re~eikeLkk~aKmkqeelSe~qvRldmaEkkLss~~k---~~~h~v~~~~ek~ee~~a 1015 (1243)
T KOG0971|consen 939 RAAALKAEIEDAEGLGLTLEDRETEIKELKKSAKMKQEELSEAQVRLDLAEKKLSSAAK---DADHRVEKVQEKLEETQA 1015 (1243)
T ss_pred HHHHHHHHHHhhhhhhhhHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhh---hHhHHHHHHHHHHHHHHH
Confidence 34444555666777777777777777666666666666666666555555555555544 455566677776666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 001374 880 HAQELEAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQL 923 (1091)
Q Consensus 880 rL~eLeaElkeLqeKVesLE~ELe~ek~~~eEleaK~~eLEeQL 923 (1091)
.+...++++.+ -++.|..+|. .++..-.+|++++
T Consensus 1016 ~lr~Ke~efee---tmdaLq~di~-------~lEsek~elKqrl 1049 (1243)
T KOG0971|consen 1016 LLRKKEKEFEE---TMDALQADID-------QLESEKAELKQRL 1049 (1243)
T ss_pred HHHHHHHHHHH---HHHHHHHHHH-------HHHhhHHHHHHHh
Confidence 65544444433 3444444444 4444444555554
No 150
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=92.40 E-value=31 Score=45.17 Aligned_cols=173 Identities=15% Similarity=0.198 Sum_probs=105.5
Q ss_pred hHHHHhhhhhhHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHH--------HHHHHHHHHH
Q 001374 129 HLESVTLSKLTAEDRAAHLDGALKECMRQIRNLKEEHEQKLQDFVLTKTKQWDKIRLEFEAK--------IANFEQELLR 200 (1091)
Q Consensus 129 ~Le~~~~q~~~le~rv~hLd~aLKec~~qLr~~reeqeqki~~~~~~~~~e~e~~~~ELEaK--------LaElEkeLee 200 (1091)
+|..+.-....|+.+-..|+.++..|-.-|.+++.+.+.--.++ ..-++.+.++..++-- ......++..
T Consensus 175 ~ll~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdV--E~~rer~~~~~~Ie~l~~k~~~v~y~~~~~ey~~ 252 (1072)
T KOG0979|consen 175 ELLQYHIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDV--ERVRERERKKSKIELLEKKKKWVEYKKHDREYNA 252 (1072)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhccccchHhhhHHHHH
Confidence 34455555566788888999999999999999999888655554 2334444444433321 1122445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001374 201 SAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANK 280 (1091)
Q Consensus 201 lkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIenlEKEne~LK~EL~~LqeELEiL~EElE~s~qsaeal~K 280 (1091)
++.....+..++..+.+.+..+...++.++++..-+..++.....+...-...+......+.....+..........+.+
T Consensus 253 ~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~ 332 (1072)
T KOG0979|consen 253 YKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKK 332 (1072)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555666666666666666666666666665555555555555555555555555555555555566666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 001374 281 QHMEGVKKIAKLEAECQRLRGLV 303 (1091)
Q Consensus 281 Q~lEl~KKLaKLEaEcqrLr~l~ 303 (1091)
+-...++.|.+....+.+++.-+
T Consensus 333 ~~~~rq~~i~~~~k~i~~~q~el 355 (1072)
T KOG0979|consen 333 AAEKRQKRIEKAKKMILDAQAEL 355 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Confidence 66666666666666555555544
No 151
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=92.40 E-value=34 Score=41.99 Aligned_cols=122 Identities=15% Similarity=0.256 Sum_probs=63.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH----HHHHHHHHHHH
Q 001374 177 TKQWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIE----QCEREINSAKY 252 (1091)
Q Consensus 177 ~~e~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIe----nlEKEne~LK~ 252 (1091)
..+|+..-...-.++...... ..+.+..+...++.+-..|.++..+..-..++.+ -||. ..+.++..++.
T Consensus 389 ~~e~~~~~r~~lekl~~~q~e---~~~~l~~v~eKVd~LpqqI~~vs~Kc~~~Ksd~d---~kIdtE~k~R~~eV~~vRq 462 (531)
T PF15450_consen 389 KNEWESDERKSLEKLDQWQNE---MEKHLKEVQEKVDSLPQQIEEVSDKCDLHKSDSD---TKIDTEGKAREREVGAVRQ 462 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhh---hhccHHHHHHHHHHHHHHH
Confidence 446665555544444444332 2223333344444444444444444333333322 2332 23344445555
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCC
Q 001374 253 ELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLVRKKLP 308 (1091)
Q Consensus 253 EL~~LqeELEiL~EElE~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l~rk~lp 308 (1091)
+|..+-..++.+.+.-. .+++.+.+.++. ...|-+|+.-++..++..-+|+.
T Consensus 463 ELa~lLssvQ~~~e~~~--~rkiaeiqg~l~--~~qi~kle~siq~nKtiqn~kfn 514 (531)
T PF15450_consen 463 ELATLLSSVQLLKEDNP--GRKIAEIQGKLA--TNQIMKLENSIQTNKTIQNLKFN 514 (531)
T ss_pred HHHHHHHHHHHhcCCCh--hhhHHHHHHHHH--HHHHHHHHHHHHHHHHHHhcccc
Confidence 55554444444433222 235666777776 77888999999999999888874
No 152
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=92.37 E-value=2.9 Score=50.46 Aligned_cols=107 Identities=19% Similarity=0.168 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhcccchhHhhhhhhHHHHHHHHHHHHHHHH
Q 001374 880 HAQELEAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNENCAVCSSEADENKIKQDRDLAAAAERLAECQE 959 (1091)
Q Consensus 880 rL~eLeaElkeLqeKVesLE~ELe~ek~~~eEleaK~~eLEeQLe~~~~~~lk~q~dkdLKikqEkEIaaAeeKLAEcQe 959 (1091)
.+..+..++.++++.+..|..+|-.++.....+.....++-+-|..+. +-......++...+.|+|||..
T Consensus 220 el~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~----------da~~ql~aE~~EleDkyAE~m~ 289 (596)
T KOG4360|consen 220 ELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYK----------DAQRQLTAELEELEDKYAECMQ 289 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH----------hhHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444433333333333332221 1122345588889999999999
Q ss_pred HHHHHHHHHHhhcCCCcccCCCCccccccCCCCCCCC
Q 001374 960 TILLLGKQLKSLRPQSEVIGSPYSERSQKGEFLPGEP 996 (1091)
Q Consensus 960 TI~sLEKQLKsLa~q~e~~~~~~~~~~~~~~~~~~~~ 996 (1091)
...+-+..|+.|++-.-+-..++.--+..-.|.++..
T Consensus 290 ~~~EaeeELk~lrs~~~p~~~s~~~~~~~~~fp~~~~ 326 (596)
T KOG4360|consen 290 MLHEAEEELKCLRSCDAPKLISQEALSHGHHFPQLSL 326 (596)
T ss_pred HHHHHHHHHHhhccCCCcchhHHHHHHhhhhCChhhH
Confidence 9999999999999876655544332222224555444
No 153
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=92.37 E-value=2.4 Score=45.95 Aligned_cols=89 Identities=25% Similarity=0.309 Sum_probs=54.5
Q ss_pred HHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 157 QIRNLKEEHEQKLQDFVLTKTKQWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELL 236 (1091)
Q Consensus 157 qLr~~reeqeqki~~~~~~~~~e~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LL 236 (1091)
||+-++-|.-+|.+++|. |..++.++...+......+..+...+....-++.....++.+..++..++
T Consensus 18 QLke~q~E~~~K~~Eiv~------------Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lL 85 (202)
T PF06818_consen 18 QLKESQAEVNQKDSEIVS------------LRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELL 85 (202)
T ss_pred HHHHHHHHHHHHHhHHHH------------HHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHh
Confidence 344455566677777765 44444455555555555555555555555555555556666666666777
Q ss_pred HhhHHHHHHHHHHHHHHHHHH
Q 001374 237 KGNIEQCEREINSAKYELHIV 257 (1091)
Q Consensus 237 kERIenlEKEne~LK~EL~~L 257 (1091)
.+++..++.++..|+..+...
T Consensus 86 rekl~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 86 REKLGQLEAELAELREELACA 106 (202)
T ss_pred hhhhhhhHHHHHHHHHHHHhh
Confidence 777777777777666666655
No 154
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=92.33 E-value=8.4 Score=49.08 Aligned_cols=61 Identities=10% Similarity=0.028 Sum_probs=31.2
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 001374 229 AEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLE 293 (1091)
Q Consensus 229 lEgEi~LLkERIenlEKEne~LK~EL~~LqeELEiL~EElE~s~qsaeal~KQ~lEl~KKLaKLE 293 (1091)
...+...+..+...++..+..++.++..+.. ...++..+++.++...+.+..+..++.+..
T Consensus 343 ~~~~~~~a~~~~~~L~~~l~~~~~~~~~~~~----~~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~ 403 (754)
T TIGR01005 343 LLMQADAAQARESQLVSDVNQLKAASAQAGE----QQVDLDALQRDAAAKRQLYESYLTNYRQAA 403 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443333222 244555666666666666666666555443
No 155
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=92.31 E-value=15 Score=46.66 Aligned_cols=153 Identities=18% Similarity=0.163 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001374 197 ELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAE 276 (1091)
Q Consensus 197 eLeelkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIenlEKEne~LK~EL~~LqeELEiL~EElE~s~qsae 276 (1091)
-++-++.++..|.+.|.-++..+.+.... ++..+ -....=.+-.+..-+..|+.++.+..+.++.+...-+.+.+-++
T Consensus 388 A~QplrsENaqLrRrLrilnqqlreqe~~-~k~~~-~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e 465 (861)
T PF15254_consen 388 AMQPLRSENAQLRRRLRILNQQLREQEKA-EKTSG-SQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIE 465 (861)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHhh-cccCC-CcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHH
Confidence 36667777888887777777666552111 11111 00011124455566666777777776666666666666666655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHhh-hcCCcCCccccCCCCCCCCCCCCCCcccchhhh
Q 001374 277 AANKQHMEGVKKIAKLEAECQRLRGLVRKKLPGPAALAQMKMEVES-LGRDYGDSRLKRSPVKPTSPHLSPVSEFSLDNV 355 (1091)
Q Consensus 277 al~KQ~lEl~KKLaKLEaEcqrLr~l~rk~lpgpaa~a~mk~ev~~-l~~~~~~~r~rr~~~~~~~~~~~~~~~~~~~~~ 355 (1091)
....+-..+.+-+...+.++-..+...- .-.+++|.||+. |..
T Consensus 466 ~q~~Enk~~~~~~~ekd~~l~~~kq~~d------~e~~rik~ev~eal~~------------------------------ 509 (861)
T PF15254_consen 466 NQKEENKRLRKMFQEKDQELLENKQQFD------IETTRIKIEVEEALVN------------------------------ 509 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHH------HHHHHHHHHHHHHHHH------------------------------
Confidence 5555555555555555555544433321 234678888874 221
Q ss_pred HhhhhhhHHHHHHHHhHHHHHHHHHHHHHhhhhhHHHH
Q 001374 356 QKFQKENEFLTERLLAMEEETKMLKEALAKRNSELQAS 393 (1091)
Q Consensus 356 ~~~~~~~~~l~~rl~~~eee~k~lke~l~~k~~elq~s 393 (1091)
...+--+|.+.|-||+.|.=.|..|++|+-.-
T Consensus 510 ------~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL 541 (861)
T PF15254_consen 510 ------VKSLQFKLEASEKENQILGITLRQRDAEIERL 541 (861)
T ss_pred ------HHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHH
Confidence 11234467777788888888888888877633
No 156
>PRK12704 phosphodiesterase; Provisional
Probab=92.25 E-value=12 Score=46.07 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=10.4
Q ss_pred HhhhHHHHHHHHHHHHHHHHHH
Q 001374 176 KTKQWDKIRLEFEAKIANFEQE 197 (1091)
Q Consensus 176 ~~~e~e~~~~ELEaKLaElEke 197 (1091)
...++...|.+++..+.+.+.+
T Consensus 62 aeeE~~~~R~Ele~e~~~~e~~ 83 (520)
T PRK12704 62 AKEEIHKLRNEFEKELRERRNE 83 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3355555555555444443333
No 157
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=92.14 E-value=4.6 Score=44.76 Aligned_cols=27 Identities=19% Similarity=0.401 Sum_probs=16.7
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001374 169 LQDFVLTKTKQWDKIRLEFEAKIANFEQ 196 (1091)
Q Consensus 169 i~~~~~~~~~e~e~~~~ELEaKLaElEk 196 (1091)
|.++ -.++.++++++..+-..+..++.
T Consensus 3 i~~i-r~K~~~lek~k~~i~~e~~~~e~ 29 (230)
T PF10146_consen 3 IKEI-RNKTLELEKLKNEILQEVESLEN 29 (230)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444 56677777777777666655533
No 158
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.04 E-value=46 Score=42.77 Aligned_cols=35 Identities=26% Similarity=0.429 Sum_probs=25.5
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHh
Q 001374 378 MLKEALAKRNSELQASRNLCAKTASKLQSLEAQMQ 412 (1091)
Q Consensus 378 ~lke~l~~k~~elq~sr~~~a~t~~kl~~~e~q~~ 412 (1091)
..+.-|..-+.++++-.+..++-.-|++.+++|..
T Consensus 852 ~ieq~ls~l~~~~k~~~nli~~ltEk~~sl~~qad 886 (970)
T KOG0946|consen 852 LIEQKLSNLQEKIKFGNNLIKELTEKISSLEAQAD 886 (970)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHhhc
Confidence 33344444456677888889999999999998766
No 159
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=91.96 E-value=15 Score=40.88 Aligned_cols=22 Identities=14% Similarity=0.474 Sum_probs=10.5
Q ss_pred HHHHHHHHhhhHHHHHHHHHHH
Q 001374 152 KECMRQIRNLKEEHEQKLQDFV 173 (1091)
Q Consensus 152 Kec~~qLr~~reeqeqki~~~~ 173 (1091)
+.+..+++..++.-.++|.+++
T Consensus 26 ~~~l~~~~~~~~~l~~~i~~~l 47 (302)
T PF10186_consen 26 RSELQQLKEENEELRRRIEEIL 47 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444555553
No 160
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=91.86 E-value=15 Score=38.72 Aligned_cols=75 Identities=15% Similarity=0.172 Sum_probs=33.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhh
Q 001374 853 LASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNE 927 (1091)
Q Consensus 853 LesLqeS~selEeqLk~~~e~ledLesrL~eLeaElkeLqeKVesLE~ELe~ek~~~eEleaK~~eLEeQLe~~~ 927 (1091)
...++..+..+...|+.-...+..+...+...-..+....+|+..+..++...+..+......+.++..+|..+.
T Consensus 44 FeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k 118 (177)
T PF13870_consen 44 FEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVK 118 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344433333333333333333444444444444444444444444444444444444444443
No 161
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=91.84 E-value=20 Score=44.20 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=11.4
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHH
Q 001374 176 KTKQWDKIRLEFEAKIANFEQEL 198 (1091)
Q Consensus 176 ~~~e~e~~~~ELEaKLaElEkeL 198 (1091)
...+|...|.+++..+.+.+.++
T Consensus 56 aeeE~~~~R~Ele~el~~~e~rL 78 (514)
T TIGR03319 56 AKEEVHKLRAELERELKERRNEL 78 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555544444433
No 162
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=91.84 E-value=6.5 Score=46.28 Aligned_cols=90 Identities=17% Similarity=0.278 Sum_probs=41.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhcccchhHhhhhhh
Q 001374 864 ETQLKCMAESYRSLETHAQELEAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNENCAVCSSEADENKIKQ 943 (1091)
Q Consensus 864 EeqLk~~~e~ledLesrL~eLeaElkeLqeKVesLE~ELe~ek~~~eEleaK~~eLEeQLe~~~~~~lk~q~dkdLKikq 943 (1091)
..|+..+-..|+.+..+|.+.+.++++...-|..+..+|..+ ..++.+.+.+|+..|. .+ ....-..++++
T Consensus 265 N~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~I-------seeLe~vK~emeerg~-~m-tD~sPlv~IKq 335 (359)
T PF10498_consen 265 NNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEI-------SEELEQVKQEMEERGS-SM-TDGSPLVKIKQ 335 (359)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-------HHHHHHHHHHHHHhcC-CC-CCCCHHHHHHH
Confidence 335555555555555555555555555555555544444433 3333344444443332 01 11122224444
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001374 944 DRDLAAAAERLAECQETILLL 964 (1091)
Q Consensus 944 EkEIaaAeeKLAEcQeTI~sL 964 (1091)
.|..+...+..+-..|--+
T Consensus 336 --Al~kLk~EI~qMdvrIGVl 354 (359)
T PF10498_consen 336 --ALTKLKQEIKQMDVRIGVL 354 (359)
T ss_pred --HHHHHHHHHHHhhhhhhee
Confidence 5555555555555444433
No 163
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=91.81 E-value=19 Score=37.87 Aligned_cols=133 Identities=17% Similarity=0.155 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 001374 832 LEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVNLLRAKIESLENELQDEKMSHHN 911 (1091)
Q Consensus 832 lEel~~qLqelE~~LeELesQLesLqeS~selEeqLk~~~e~ledLesrL~eLeaElkeLqeKVesLE~ELe~ek~~~eE 911 (1091)
++.++.....+..+|+|-..+|..++......-..+....+.+..+...+..+..++......+..++.++...+..+..
T Consensus 44 FeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k 123 (177)
T PF13870_consen 44 FEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDK 123 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555566666666666666655555555566666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHhhhhhhcccchhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 912 AMAKCKELEEQLQRNENCAVCSSEADENKIKQDRDLAAAAERLAECQETILLLGKQLK 969 (1091)
Q Consensus 912 leaK~~eLEeQLe~~~~~~lk~q~dkdLKikqEkEIaaAeeKLAEcQeTI~sLEKQLK 969 (1091)
+.....+|..+..-+....+ =.+ =......+......+..++..+..++..|+
T Consensus 124 ~~~~~~~l~~~~~~~~~P~l----l~D-y~~~~~~~~~l~~~i~~l~rk~~~l~~~i~ 176 (177)
T PF13870_consen 124 LRKQNKKLRQQGGLLGVPAL----LRD-YDKTKEEVEELRKEIKELERKVEILEMRIK 176 (177)
T ss_pred HHHHHHHHHHhcCCCCCcHH----HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 66666666655554432111 000 011222444455555555555555555443
No 164
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=91.72 E-value=25 Score=43.64 Aligned_cols=36 Identities=14% Similarity=0.121 Sum_probs=17.8
Q ss_pred hhHHHHHHHHHHHHhHHHHhhhhhhHHHHHhhhhHH
Q 001374 115 GWEKAEAEALALKNHLESVTLSKLTAEDRAAHLDGA 150 (1091)
Q Consensus 115 gwekae~e~~~lK~~Le~~~~q~~~le~rv~hLd~a 150 (1091)
-|.++..+...++..-.....+..-++-++..|+.|
T Consensus 169 ~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~ 204 (563)
T TIGR00634 169 AWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEEA 204 (563)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhC
Confidence 355555555555444444444444555555555443
No 165
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=91.70 E-value=18 Score=44.36 Aligned_cols=74 Identities=22% Similarity=0.342 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhcccchhHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001374 886 AEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNENCAVCSSEADENKIKQDRDLAAAAERLAECQETILLLG 965 (1091)
Q Consensus 886 aElkeLqeKVesLE~ELe~ek~~~eEleaK~~eLEeQLe~~~~~~lk~q~dkdLKikqEkEIaaAeeKLAEcQeTI~sLE 965 (1091)
.+...|..++...+.+.+.....+.+...+|..|+++|+.. +...|.+|....+-++.+.+++..-.
T Consensus 441 ~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TT-------------r~NYE~QLs~MSEHLasmNeqL~~Q~ 507 (518)
T PF10212_consen 441 AECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETT-------------RRNYEEQLSMMSEHLASMNEQLAKQR 507 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444422 34467788888888888888888888
Q ss_pred HHHHhhc
Q 001374 966 KQLKSLR 972 (1091)
Q Consensus 966 KQLKsLa 972 (1091)
.+|..|+
T Consensus 508 eeI~~LK 514 (518)
T PF10212_consen 508 EEIQTLK 514 (518)
T ss_pred HHHHHHh
Confidence 8887776
No 166
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=91.60 E-value=12 Score=45.08 Aligned_cols=28 Identities=11% Similarity=0.285 Sum_probs=17.4
Q ss_pred hhHHHHHhhhhHHHHHHHHHHHhhhHHH
Q 001374 138 LTAEDRAAHLDGALKECMRQIRNLKEEH 165 (1091)
Q Consensus 138 ~~le~rv~hLd~aLKec~~qLr~~reeq 165 (1091)
.-++.++..+...|.+...+|+..|.+.
T Consensus 164 ~fl~~ql~~~~~~L~~ae~~l~~f~~~~ 191 (498)
T TIGR03007 164 RFIDEQIKTYEKKLEAAENRLKAFKQEN 191 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3456666666666666666666666543
No 167
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=91.53 E-value=6.3 Score=46.34 Aligned_cols=118 Identities=15% Similarity=0.283 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHH
Q 001374 810 EFEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLA----EVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELE 885 (1091)
Q Consensus 810 elEqLEsEkeelE~eLee~~eklEel~~qLqelE~~Le----ELesQLesLqeS~selEeqLk~~~e~ledLesrL~eLe 885 (1091)
.+++|+.-...+...+..+...+..+...+...-.+|. -|..|++.+-..+..+..++....++|+.++...+++.
T Consensus 221 hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t 300 (359)
T PF10498_consen 221 HLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERT 300 (359)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 45566555555555555555555555544444333333 23344455555555555566666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhH------HHHHHHHHHHHHHHhhh
Q 001374 886 AEVNLLRAKIESLENELQDEKMSHH------NAMAKCKELEEQLQRNE 927 (1091)
Q Consensus 886 aElkeLqeKVesLE~ELe~ek~~~e------EleaK~~eLEeQLe~~~ 927 (1091)
.++.++..+++..+.+++..-..+. .+..-+.+|+.+|..+.
T Consensus 301 ~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~kLk~EI~qMd 348 (359)
T PF10498_consen 301 RELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQALTKLKQEIKQMD 348 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 6666666666666666666544444 44455555555555443
No 168
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=91.44 E-value=5.4 Score=40.13 Aligned_cols=90 Identities=23% Similarity=0.299 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001374 832 LEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYR---SLETHAQELEAEVNLLRAKIESLENELQDEKMS 908 (1091)
Q Consensus 832 lEel~~qLqelE~~LeELesQLesLqeS~selEeqLk~~~e~le---dLesrL~eLeaElkeLqeKVesLE~ELe~ek~~ 908 (1091)
++.+.++|+..+..+.-++.++..+......+..+|-.+....+ ....++..++.++..++.+...+=.=+..+...
T Consensus 18 ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~ 97 (120)
T PF12325_consen 18 VERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEE 97 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 44455555555555555555555555555555555544443332 222333344444444444444444444444444
Q ss_pred hHHHHHHHHHHHH
Q 001374 909 HHNAMAKCKELEE 921 (1091)
Q Consensus 909 ~eEleaK~~eLEe 921 (1091)
.+++...+.++++
T Consensus 98 veEL~~Dv~DlK~ 110 (120)
T PF12325_consen 98 VEELRADVQDLKE 110 (120)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
No 169
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=91.43 E-value=39 Score=40.69 Aligned_cols=45 Identities=20% Similarity=0.082 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 001374 249 SAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLE 293 (1091)
Q Consensus 249 ~LK~EL~~LqeELEiL~EElE~s~qsaeal~KQ~lEl~KKLaKLE 293 (1091)
.|..-+.+.++-+..++.++...++.++++..+...+.+.|+.++
T Consensus 200 kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e 244 (420)
T COG4942 200 KLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAE 244 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 333333333334444444444444445555555555555555555
No 170
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=91.31 E-value=25 Score=38.18 Aligned_cols=167 Identities=17% Similarity=0.157 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHhHHHHhhhhhhHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 001374 118 KAEAEALALKNHLESVTLSKLTAEDRAAHLDGALKECMRQIRNLKEEHEQKLQDFVLTKTKQWDKIRLEFEAKIANFEQE 197 (1091)
Q Consensus 118 kae~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLKec~~qLr~~reeqeqki~~~~~~~~~e~e~~~~ELEaKLaElEke 197 (1091)
|-..|...|+..++.+..-+..|-..+.. |+.+|+-+. |-++-+ -.-..|.+++|. -+..++.+
T Consensus 19 ~L~~en~kL~~~ve~~ee~na~L~~e~~~----L~~q~~s~Q-------qal~~a-K~l~eEledLk~----~~~~lEE~ 82 (193)
T PF14662_consen 19 KLADENAKLQRSVETAEEGNAQLAEEITD----LRKQLKSLQ-------QALQKA-KALEEELEDLKT----LAKSLEEE 82 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH-------HHHHHH-HHHHHHHHHHHH----HHHHHHHH
Confidence 33455677777777766666555554443 344443332 111111 111334444443 33445566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001374 198 LLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEA 277 (1091)
Q Consensus 198 LeelkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIenlEKEne~LK~EL~~LqeELEiL~EElE~s~qsaea 277 (1091)
...+.++...+.+.-+.+-..|..+.++..++.++...++-+...+...+..|+.++..-..-+-.+...+....+.++.
T Consensus 83 ~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~e 162 (193)
T PF14662_consen 83 NRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEE 162 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 66666677777777777777777778888888888888888888888888888888876666555555555555555566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 001374 278 ANKQHMEGVKKIAKLEAECQRLR 300 (1091)
Q Consensus 278 l~KQ~lEl~KKLaKLEaEcqrLr 300 (1091)
+...+.++..-...|..+..++.
T Consensus 163 L~~~ieEy~~~teeLR~e~s~LE 185 (193)
T PF14662_consen 163 LKKTIEEYRSITEELRLEKSRLE 185 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 65555555555555554444443
No 171
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=91.29 E-value=3.7 Score=47.35 Aligned_cols=78 Identities=24% Similarity=0.246 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 219 LIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAEC 296 (1091)
Q Consensus 219 I~EL~eeiErlEgEi~LLkERIenlEKEne~LK~EL~~LqeELEiL~EElE~s~qsaeal~KQ~lEl~KKLaKLEaEc 296 (1091)
+..+..++..++.+...+.+.+..++++...|..++..++.+.+.+..+....-+.......++.+..++...++..+
T Consensus 45 ~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~ 122 (314)
T PF04111_consen 45 IEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQY 122 (314)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555556666666666666666666666666666665555555555555555555555555554444
No 172
>PF13166 AAA_13: AAA domain
Probab=91.22 E-value=31 Score=43.56 Aligned_cols=58 Identities=19% Similarity=0.268 Sum_probs=31.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHhhhcCC
Q 001374 266 EEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLVRKKLPGPAALAQMKMEVESLGRD 326 (1091)
Q Consensus 266 EElE~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l~rk~lpgpaa~a~mk~ev~~l~~~ 326 (1091)
.++....+.+..+..........+..++.++..++.-+...- .+...+-.++..+|..
T Consensus 417 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~---~~~~~iN~~L~~~g~~ 474 (712)
T PF13166_consen 417 KEIKELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQLKNTE---PAADRINEELKRLGFS 474 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH---HHHHHHHHHHHHhCCC
Confidence 333444444455555555555555555555555554444322 2456777888888744
No 173
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=91.17 E-value=33 Score=39.43 Aligned_cols=101 Identities=13% Similarity=0.109 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH----
Q 001374 200 RSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSA---- 275 (1091)
Q Consensus 200 elkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIenlEKEne~LK~EL~~LqeELEiL~EElE~s~qsa---- 275 (1091)
.....+....-++.+...++..-.....+.-+..+-+++|+..++.++.-|+.+|....++-.....-.-.++..+
T Consensus 183 ~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ~~f~d~~ 262 (305)
T PF14915_consen 183 SVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQDQFQDIV 262 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3333444444444444455555555566666666667777777777777777777666665444443333333333
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHh
Q 001374 276 ----EAANKQHMEGVKKIAKLEAECQRLR 300 (1091)
Q Consensus 276 ----eal~KQ~lEl~KKLaKLEaEcqrLr 300 (1091)
....++..-+..+-.+|-.+|..++
T Consensus 263 ~~L~ae~ekq~lllEErNKeL~ne~n~Lk 291 (305)
T PF14915_consen 263 KKLQAESEKQVLLLEERNKELINECNHLK 291 (305)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3333444444444444555555444
No 174
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=90.84 E-value=21 Score=37.58 Aligned_cols=45 Identities=22% Similarity=0.402 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 809 EEFEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQL 853 (1091)
Q Consensus 809 EelEqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQL 853 (1091)
.+++.++.++..+...+...-.+...+....+.+...|.+....+
T Consensus 27 ~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f 71 (159)
T PF05384_consen 27 QEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNF 71 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 345555555555555555555555555555555555555444444
No 175
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=90.78 E-value=0.071 Score=68.49 Aligned_cols=116 Identities=22% Similarity=0.338 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHH----
Q 001374 810 EFEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELE---- 885 (1091)
Q Consensus 810 elEqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selEeqLk~~~e~ledLesrL~eLe---- 885 (1091)
+...|+.++..++.+|.+....+..+...++.+...++.+..+|..-+.....++..-..+...++++..+|..++
T Consensus 659 ~kr~le~~i~~l~~eleE~~~~~~~~~ek~kka~~~~~~l~~eL~~Eq~~~~~le~~k~~LE~q~keLq~rl~e~E~~~~ 738 (859)
T PF01576_consen 659 EKRKLEAEIQQLEEELEEEQSEAEAAEEKAKKAQAQAAQLAEELRQEQDHNQHLEKEKKALERQVKELQARLEEAEQSAL 738 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3445666666666666666666666666666666666666666666555555555555555555555555555544
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Q 001374 886 ----AEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQR 925 (1091)
Q Consensus 886 ----aElkeLqeKVesLE~ELe~ek~~~eEleaK~~eLEeQLe~ 925 (1091)
..+..|..+|.-|+.+|+.+...+.++..-+..++..+..
T Consensus 739 ~~~k~~i~kLE~ri~eLE~~Le~E~r~~~~~~k~~rk~er~~kE 782 (859)
T PF01576_consen 739 KGGKKQIAKLEARIRELEEELESEQRRRAEAQKQLRKLERRVKE 782 (859)
T ss_dssp --------------------------------------------
T ss_pred cccccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4555666677777777777666666555555555544444
No 176
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=90.76 E-value=13 Score=36.76 Aligned_cols=38 Identities=16% Similarity=0.258 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 001374 874 YRSLETHAQELEAEVNLLRAKIESLENELQDEKMSHHN 911 (1091)
Q Consensus 874 ledLesrL~eLeaElkeLqeKVesLE~ELe~ek~~~eE 911 (1091)
.+.|.+.+..++.+.....+++..|+..+....+.+..
T Consensus 39 kd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 39 KDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED 76 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444443
No 177
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=90.58 E-value=48 Score=40.25 Aligned_cols=128 Identities=15% Similarity=0.211 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH---HHHHHHHHHHH
Q 001374 186 EFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAK---YELHIVSKELE 262 (1091)
Q Consensus 186 ELEaKLaElEkeLeelkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIenlEKEne~LK---~EL~~LqeELE 262 (1091)
.++.+-..+......+.+-..++....+++-..+..+..+++..+.++..|++++..+...+..-. .++.....+.+
T Consensus 299 ~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere 378 (622)
T COG5185 299 TLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQERE 378 (622)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 344444444444444444455555555555555555555555555555555555555444332210 11112222333
Q ss_pred HHHHHHHHhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhhhhccCCChHHH
Q 001374 263 IRNEEKNMSMRSAEA----ANKQHMEGVKKIAKLEAECQRLRGLVRKKLPGPAAL 313 (1091)
Q Consensus 263 iL~EElE~s~qsaea----l~KQ~lEl~KKLaKLEaEcqrLr~l~rk~lpgpaa~ 313 (1091)
.+..+++...-..+. ...+.++.+.-+..|+..++.+..|...-.-.||||
T Consensus 379 ~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~slek~~~~~~sl~~~i~~~~~~i 433 (622)
T COG5185 379 KLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDSLIQNITRSRSQI 433 (622)
T ss_pred HHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHH
Confidence 333333333222222 223445556666677777777777776655556664
No 178
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=90.26 E-value=24 Score=36.19 Aligned_cols=26 Identities=27% Similarity=0.328 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhH
Q 001374 885 EAEVNLLRAKIESLENELQDEKMSHH 910 (1091)
Q Consensus 885 eaElkeLqeKVesLE~ELe~ek~~~e 910 (1091)
..++..+...+...+.++...+..+.
T Consensus 100 ~~~~~~~~~~~k~~kee~~klk~~~~ 125 (151)
T PF11559_consen 100 QKQLKSLEAKLKQEKEELQKLKNQLQ 125 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333334433333333
No 179
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=90.19 E-value=30 Score=37.36 Aligned_cols=76 Identities=24% Similarity=0.244 Sum_probs=51.9
Q ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 147 LDGALKECMRQIRNLKEEHEQKLQDFVLTKTKQWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKI 222 (1091)
Q Consensus 147 Ld~aLKec~~qLr~~reeqeqki~~~~~~~~~e~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLEelqeeI~EL 222 (1091)
+..|-++..+=+..++.+-+....++......+|.+++.+++..+..-..++......+..-...|+.....+...
T Consensus 29 ~~~A~~~A~~i~~~A~~eAe~~~ke~~~eakee~~~~r~~~E~E~~~~~~el~~~E~rl~~rE~~L~~~~~~L~~~ 104 (201)
T PF12072_consen 29 LEQAEKEAEQILEEAEREAEAIKKEAELEAKEEAQKLRQELERELKERRKELQRLEKRLQQREEQLDRRLEQLEKR 104 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666666677777777888888888899999998888887777776666655555555555444443333
No 180
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=90.08 E-value=33 Score=44.06 Aligned_cols=160 Identities=18% Similarity=0.160 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 001374 811 FEELKLEKDNLATD-LARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVN 889 (1091)
Q Consensus 811 lEqLEsEkeelE~e-Lee~~eklEel~~qLqelE~~LeELesQLesLqeS~selEeqLk~~~e~ledLesrL~eLeaElk 889 (1091)
++=+-.-.+.+..+ +.....-..+++.++.-+.......-.+|..+++.+..+.+.-+.+.++|+++..+-..+..++.
T Consensus 538 l~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~ 617 (717)
T PF10168_consen 538 LELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVD 617 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444555544 23333345556666666666666666667777777777777777777788888877777777777
Q ss_pred HHHHHHHH-----------HHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhcc----cchhHhhhhhhHHHHHHHHHHH
Q 001374 890 LLRAKIES-----------LENELQDEKMSHHNAMAKCKELEEQLQRNENCAVC----SSEADENKIKQDRDLAAAAERL 954 (1091)
Q Consensus 890 eLqeKVes-----------LE~ELe~ek~~~eEleaK~~eLEeQLe~~~~~~lk----~q~dkdLKikqEkEIaaAeeKL 954 (1091)
.+...+.. ..+|++..+..+..+.+.+.+++.++..-...... ......+...|. ..+.+-|
T Consensus 618 ~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~~~~~~~~~s~~L~~~Q~---~~I~~iL 694 (717)
T PF10168_consen 618 RVLQLLNSQLPVLSEAEREFKKELERMKDQLQDLKASIEQLKKKLDYQQRQIESQKSPKKKSIVLSESQK---RTIKEIL 694 (717)
T ss_pred HHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCccCCHHHH---HHHHHHH
Confidence 77666543 34455555555555666666665555543321011 111112222233 3333445
Q ss_pred HHHHHHHHHHHHHHHhhcC
Q 001374 955 AECQETILLLGKQLKSLRP 973 (1091)
Q Consensus 955 AEcQeTI~sLEKQLKsLa~ 973 (1091)
.+.-+.|..+=+++|.+..
T Consensus 695 ~~~~~~I~~~v~~ik~i~~ 713 (717)
T PF10168_consen 695 KQQGEEIDELVKQIKNIKK 713 (717)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555566666666665543
No 181
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=90.07 E-value=64 Score=40.92 Aligned_cols=259 Identities=17% Similarity=0.139 Sum_probs=125.1
Q ss_pred HHHHhHHHHhhhhhhHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 125 ALKNHLESVTLSKLTAEDRAAHLDGALKECMRQIRNLKEEHEQKLQDFVLTKTKQWDKIRLEFEAKIANFEQELLRSAAE 204 (1091)
Q Consensus 125 ~lK~~Le~~~~q~~~le~rv~hLd~aLKec~~qLr~~reeqeqki~~~~~~~~~e~e~~~~ELEaKLaElEkeLeelkaE 204 (1091)
.++.+++...++.-+...+...|=.++-....++..+|.--++++-.+ ..+..-++..-..+...+...++++.....+
T Consensus 123 ~lq~q~e~~~n~~q~~~~k~~el~~e~~~k~ae~~~lr~k~dss~s~~-q~e~~~~~~~~~~~~s~l~~~eke~~~~~~q 201 (716)
T KOG4593|consen 123 KLQEQLERNRNQCQANLKKELELLREKEDKLAELGTLRNKLDSSLSEL-QWEVMLQEMRAKRLHSELQNEEKELDRQHKQ 201 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666666666666666665555444433 1111111111111222222223333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH---HHHHHHHH
Q 001374 205 NATLSRSLQERSNMLIKISEE----------------KSQAEAEIELLKGNIEQCEREINSAKYELHIV---SKELEIRN 265 (1091)
Q Consensus 205 l~aLeeqLEelqeeI~EL~ee----------------iErlEgEi~LLkERIenlEKEne~LK~EL~~L---qeELEiL~ 265 (1091)
+....+.+.+....+.++... ++.+.-.+..--+++..+++.+..+..++..+ ..-..++.
T Consensus 202 l~~~~q~~~~~~~~l~e~~~~~qq~a~~~~ql~~~~ele~i~~~~~dqlqel~~l~~a~~q~~ee~~~~re~~~tv~~Lq 281 (716)
T KOG4593|consen 202 LQEENQKIQELQASLEERADHEQQNAELEQQLSLSEELEAINKNMKDQLQELEELERALSQLREELATLRENRETVGLLQ 281 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 333322222222222222211 22222222222233333444444444444422 22333455
Q ss_pred HHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc--cCCChHHHHHHHHHHhhhcCCcCCccccCCCCCCC
Q 001374 266 EEKNMSMRS---AEAANKQHMEGVKKIAKLEAECQRLRGLVRK--KLPGPAALAQMKMEVESLGRDYGDSRLKRSPVKPT 340 (1091)
Q Consensus 266 EElE~s~qs---aeal~KQ~lEl~KKLaKLEaEcqrLr~l~rk--~lpgpaa~a~mk~ev~~l~~~~~~~r~rr~~~~~~ 340 (1091)
+|++.++.. +..+..++.-+.-....+..++++|..+-.- .+|-|-++ |...|.-+.+..+..-.-++ -.
T Consensus 282 eE~e~Lqskl~~~~~l~~~~~~LELeN~~l~tkL~rwE~~~~~~~~~~~~~~~--~~~~~~e~s~~~~l~~~~~t---~~ 356 (716)
T KOG4593|consen 282 EELEGLQSKLGRLEKLQSTLLGLELENEDLLTKLQRWERADQEMGSLRTPEDL--MEKLVNEQSRNANLKNKNST---VT 356 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHH--HHHHHHHHHHHhhhcccccc---cc
Confidence 555555433 3566677777777888888999999888777 88888764 88888776655443321111 11
Q ss_pred CCCCCCCcccchhhhHhhhhhhHHHHHHHHhHHHHHHHHHHHHHhhhhhHHHHHH
Q 001374 341 SPHLSPVSEFSLDNVQKFQKENEFLTERLLAMEEETKMLKEALAKRNSELQASRN 395 (1091)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~l~~rl~~~eee~k~lke~l~~k~~elq~sr~ 395 (1091)
+|..-+.+ .-.+.++..-=+.-+..++...|.|-+.|+.++-..+..++
T Consensus 357 s~~~~~~r------~~q~lke~~k~~~~ite~~tklk~l~etl~~~~~~~~~~~t 405 (716)
T KOG4593|consen 357 SPARGLER------ARQLLKEELKQVAGITEEETKLKELHETLARRLQKRALLLT 405 (716)
T ss_pred CcccchHH------HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 11100111 11222333333555667777788888888877766654433
No 182
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=89.96 E-value=4.5 Score=49.90 Aligned_cols=97 Identities=21% Similarity=0.283 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 820 NLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVNLLRAKIESLE 899 (1091)
Q Consensus 820 elE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selEeqLk~~~e~ledLesrL~eLeaElkeLqeKVesLE 899 (1091)
....++..|..+++.++.+.+.++..+.+++..+..|+ .++..+...... -.....++..+..+|..|+
T Consensus 419 ~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~-------~~l~~~~r~~~~----~~~~~rei~~~~~~I~~L~ 487 (652)
T COG2433 419 VYEKRIKKLEETVERLEEENSELKRELEELKREIEKLE-------SELERFRREVRD----KVRKDREIRARDRRIERLE 487 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH----HHhhhHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444433 355544433320 0113467777888888899
Q ss_pred HHHHHHHhhhHHHHHHHHHHH--HHHHhhh
Q 001374 900 NELQDEKMSHHNAMAKCKELE--EQLQRNE 927 (1091)
Q Consensus 900 ~ELe~ek~~~eEleaK~~eLE--eQLe~~~ 927 (1091)
.+|...+...+.|+.++..|. ..|+.-|
T Consensus 488 ~~L~e~~~~ve~L~~~l~~l~k~~~lE~sG 517 (652)
T COG2433 488 KELEEKKKRVEELERKLAELRKMRKLELSG 517 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Confidence 998888888888888888777 4444333
No 183
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=89.86 E-value=16 Score=46.38 Aligned_cols=116 Identities=16% Similarity=0.174 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 001374 180 WDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSK 259 (1091)
Q Consensus 180 ~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIenlEKEne~LK~EL~~Lqe 259 (1091)
+.++.+-|++++.+..+.++-++..++.|-+.++...++...+...+...+.++. +..+..+-+..+++.|+...-.
T Consensus 432 LqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~---~~kq~~d~e~~rik~ev~eal~ 508 (861)
T PF15254_consen 432 LQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQKEENKRLRKMFQEKDQELL---ENKQQFDIETTRIKIEVEEALV 508 (861)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHH
Confidence 4577788999999999999999999999999998888888887776665555544 3445555666777766665555
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 001374 260 ELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLVRK 305 (1091)
Q Consensus 260 ELEiL~EElE~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l~rk 305 (1091)
..+.+.-. ++++.++-.-+.-.|.+-.+|+.||+-|.|-
T Consensus 509 ~~k~~q~k-------Le~sekEN~iL~itlrQrDaEi~RL~eLtR~ 547 (861)
T PF15254_consen 509 NVKSLQFK-------LEASEKENQILGITLRQRDAEIERLRELTRT 547 (861)
T ss_pred HHHHHhhh-------HHHHHhhhhHhhhHHHHHHHHHHHHHHHHHH
Confidence 54444444 4444444444555666677777777777764
No 184
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=89.83 E-value=12 Score=44.78 Aligned_cols=52 Identities=19% Similarity=0.202 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 001374 873 SYRSLETHAQELEAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQ 924 (1091)
Q Consensus 873 ~ledLesrL~eLeaElkeLqeKVesLE~ELe~ek~~~eEleaK~~eLEeQLe 924 (1091)
..+.++.++.++...++..++.+..++++-..+.........++++++++..
T Consensus 376 ~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~ 427 (493)
T KOG0804|consen 376 EKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREK 427 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3334444555555555555555555554444444444444444444444433
No 185
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=89.64 E-value=13 Score=44.08 Aligned_cols=82 Identities=16% Similarity=0.112 Sum_probs=35.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 001374 178 KQWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIV 257 (1091)
Q Consensus 178 ~e~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIenlEKEne~LK~EL~~L 257 (1091)
.++++....+-+++..+.++...+++.+...+..|..++++...+.++.-+.+..-+-+...+...+...-++..+|..+
T Consensus 23 aq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~~~~t~~~~~~en~~~r~~~eir~~ 102 (459)
T KOG0288|consen 23 AQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEATEKTLTVDVLIAENLRIRSLNEIREL 102 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444444444444444444444444433333334444444444434444444443
Q ss_pred HH
Q 001374 258 SK 259 (1091)
Q Consensus 258 qe 259 (1091)
.+
T Consensus 103 ~~ 104 (459)
T KOG0288|consen 103 RE 104 (459)
T ss_pred HH
Confidence 33
No 186
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=89.56 E-value=90 Score=41.85 Aligned_cols=52 Identities=13% Similarity=0.131 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHhhhc
Q 001374 273 RSAEAANKQHMEGVKKIAKLEAECQRLRGLVRKKLPGPAALAQMKMEVESLG 324 (1091)
Q Consensus 273 qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l~rk~lpgpaa~a~mk~ev~~l~ 324 (1091)
..+..+...+......+..+...+..+.....+.----.+++....+.+.|+
T Consensus 829 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 880 (1047)
T PRK10246 829 QELAQLAQQLRENTTRQGEIRQQLKQDADNRQQQQALMQQIAQATQQVEDWG 880 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444444444433333322211233444444444443
No 187
>PRK10884 SH3 domain-containing protein; Provisional
Probab=89.50 E-value=5 Score=43.77 Aligned_cols=22 Identities=14% Similarity=0.178 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001374 808 LEEFEELKLEKDNLATDLARCT 829 (1091)
Q Consensus 808 ~EelEqLEsEkeelE~eLee~~ 829 (1091)
.+.+.+++.++..++.+++.+.
T Consensus 92 ~~rlp~le~el~~l~~~l~~~~ 113 (206)
T PRK10884 92 RTRVPDLENQVKTLTDKLNNID 113 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555444
No 188
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=89.44 E-value=15 Score=48.10 Aligned_cols=104 Identities=20% Similarity=0.190 Sum_probs=44.6
Q ss_pred ccCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHH
Q 001374 805 KFSLEEFEELKLEKDNLATDLA--RCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQ 882 (1091)
Q Consensus 805 ~~s~EelEqLEsEkeelE~eLe--e~~eklEel~~qLqelE~~LeELesQLesLqeS~selEeqLk~~~e~ledLesrL~ 882 (1091)
|-.-+++++|+.++..+...-- ..++.+......++....+|++++.+++.++..+..+.+.+..+...+..+..++.
T Consensus 407 Kd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~ 486 (1041)
T KOG0243|consen 407 KDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKE 486 (1041)
T ss_pred HHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3334555555555554433222 11122222223334444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001374 883 ELEAEVNLLRAKIESLENELQDEKMS 908 (1091)
Q Consensus 883 eLeaElkeLqeKVesLE~ELe~ek~~ 908 (1091)
.++..+......+..++.++...+..
T Consensus 487 ~~k~~L~~~~~el~~~~ee~~~~~~~ 512 (1041)
T KOG0243|consen 487 KLKSKLQNKNKELESLKEELQQAKAT 512 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444333
No 189
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=89.41 E-value=13 Score=37.89 Aligned_cols=79 Identities=20% Similarity=0.232 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 001374 816 LEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVNLLRAK 894 (1091)
Q Consensus 816 sEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selEeqLk~~~e~ledLesrL~eLeaElkeLqeK 894 (1091)
-.++.+-++|++++.--..+...|.++.....-|+.+|+++...+..+++=+..-.+.+..+..++.+.+.+..+.+.-
T Consensus 6 P~iE~LInrInelQQaKKk~~EELgEa~~l~eaL~~ELDsL~~EkvhLeeilnkKqe~l~iLqlhcqeke~eaqrq~~~ 84 (134)
T PF15233_consen 6 PQIEDLINRINELQQAKKKSSEELGEAQALWEALQRELDSLNGEKVHLEEILNKKQETLRILQLHCQEKESEAQRQQTL 84 (134)
T ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 3566777888888888888888999999999999999999999988998888888888888888888888777766544
No 190
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=89.41 E-value=37 Score=37.26 Aligned_cols=27 Identities=15% Similarity=0.234 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001374 274 SAEAANKQHMEGVKKIAKLEAECQRLR 300 (1091)
Q Consensus 274 saeal~KQ~lEl~KKLaKLEaEcqrLr 300 (1091)
.+..+..++....+...+|..-|..|-
T Consensus 176 ~~~SLe~~LeQK~kEn~ELtkICDeLI 202 (207)
T PF05010_consen 176 KVQSLEESLEQKTKENEELTKICDELI 202 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555543
No 191
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=89.22 E-value=0.11 Score=65.42 Aligned_cols=26 Identities=38% Similarity=0.532 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHhHHHHHHHHHHHHH
Q 001374 359 QKENEFLTERLLAMEEETKMLKEALA 384 (1091)
Q Consensus 359 ~~~~~~l~~rl~~~eee~k~lke~l~ 384 (1091)
+.++-.|++++-.+.-+.+.|+.++.
T Consensus 349 q~~~~~L~ek~g~~~~~~~~l~~~~~ 374 (722)
T PF05557_consen 349 QQENASLTEKLGSLQSELRELEEEIQ 374 (722)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 34445566666666666655554443
No 192
>PRK00106 hypothetical protein; Provisional
Probab=89.14 E-value=55 Score=40.74 Aligned_cols=11 Identities=36% Similarity=0.353 Sum_probs=4.3
Q ss_pred hhHHHHHHHHH
Q 001374 178 KQWDKIRLEFE 188 (1091)
Q Consensus 178 ~e~e~~~~ELE 188 (1091)
+++...+.+++
T Consensus 79 eEi~~~R~ElE 89 (535)
T PRK00106 79 EEARKYREEIE 89 (535)
T ss_pred HHHHHHHHHHH
Confidence 33333343333
No 193
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=89.13 E-value=38 Score=40.49 Aligned_cols=90 Identities=21% Similarity=0.168 Sum_probs=48.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHH
Q 001374 807 SLEEFEELKLEKDNLATDLARCTE-NLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELE 885 (1091)
Q Consensus 807 s~EelEqLEsEkeelE~eLee~~e-klEel~~qLqelE~~LeELesQLesLqeS~selEeqLk~~~e~ledLesrL~eLe 885 (1091)
+...+.+|+.++-.++..++..++ ....+...+++++..----+.-|+.|....-++++-++. +.+
T Consensus 134 Lsrkl~qLr~ek~~lEq~leqeqef~vnKlm~ki~Klen~t~~kq~~leQLRre~V~lentlEQ-------------EqE 200 (552)
T KOG2129|consen 134 LSRKLKQLRHEKLPLEQLLEQEQEFFVNKLMNKIRKLENKTLLKQNTLEQLRREAVQLENTLEQ-------------EQE 200 (552)
T ss_pred hhHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHH-------------HHH
Confidence 344677888777777777766552 233444455555433322222234444433333333332 234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 001374 886 AEVNLLRAKIESLENELQDEKMSH 909 (1091)
Q Consensus 886 aElkeLqeKVesLE~ELe~ek~~~ 909 (1091)
+=++.|-.+++.|+.|..++...+
T Consensus 201 alvN~LwKrmdkLe~ekr~Lq~Kl 224 (552)
T KOG2129|consen 201 ALVNSLWKRMDKLEQEKRYLQKKL 224 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556677777777777777766544
No 194
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=88.86 E-value=78 Score=40.19 Aligned_cols=230 Identities=16% Similarity=0.207 Sum_probs=114.3
Q ss_pred HHHHHHHHHhHHHHhhhhhhHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 001374 120 EAEALALKNHLESVTLSKLTAEDRAAHLDGALKECMRQIRNLKEEHEQKLQDFVLTKTKQWDKIRLEFEAKIANFEQELL 199 (1091)
Q Consensus 120 e~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLKec~~qLr~~reeqeqki~~~~~~~~~e~e~~~~ELEaKLaElEkeLe 199 (1091)
|.|+-.|+.-|+.-+ +...-..++...-..|+..-++|-.+---.+..+||.-..-+-.-+ -....-.++.++..+|.
T Consensus 404 e~eleeL~~~L~e~q-kll~ekk~~eki~E~lq~~eqel~~llq~~ekev~dLe~~l~~~~~-~eq~yskQVeeLKtELE 481 (786)
T PF05483_consen 404 EVELEELKKILAEKQ-KLLDEKKQFEKIAEELQGTEQELTGLLQIREKEVHDLEIQLTTIKE-SEQHYSKQVEELKTELE 481 (786)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHH
Confidence 445555666666544 2333344456666677777777777776667777764222111111 11223344445555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001374 200 RSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAAN 279 (1091)
Q Consensus 200 elkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIenlEKEne~LK~EL~~LqeELEiL~EElE~s~qsaeal~ 279 (1091)
.-+-.+..|......++-+--.+..+....-.++.-+++.+.+..+.-.++..+|..+.+.-..+..+++.++. .+.
T Consensus 482 ~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~~~~Lrneles~~e---el~ 558 (786)
T PF05483_consen 482 QEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQEDINNSKKQEEKMLKQIENLEETNTQLRNELESVKE---ELK 558 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Confidence 44444455544444444444444444455555555555555555555555555555555544444444443322 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHhhhcCCcCCccccCCCCCCCCCCCCCCcccchhhhHhhh
Q 001374 280 KQHMEGVKKIAKLEAECQRLRGLVRKKLPGPAALAQMKMEVESLGRDYGDSRLKRSPVKPTSPHLSPVSEFSLDNVQKFQ 359 (1091)
Q Consensus 280 KQ~lEl~KKLaKLEaEcqrLr~l~rk~lpgpaa~a~mk~ev~~l~~~~~~~r~rr~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (1091)
.+-.+...++.+-+...+....-+-++-+ +|+. -+ .......
T Consensus 559 ~k~~Ev~~kl~ksEen~r~~e~e~~~k~k------q~k~-----------------------------le---nk~~~Lr 600 (786)
T PF05483_consen 559 QKGEEVKCKLDKSEENARSIECEILKKEK------QMKI-----------------------------LE---NKCNNLR 600 (786)
T ss_pred HHHHHHHHHhhhHHHhhHHHHHHHhhhHH------HHHH-----------------------------HH---HHHHHHH
Confidence 33334444444443333322222222221 1111 00 0111233
Q ss_pred hhhHHHHHHHHhHHHHHHHHHHHHHhhhhhHHH
Q 001374 360 KENEFLTERLLAMEEETKMLKEALAKRNSELQA 392 (1091)
Q Consensus 360 ~~~~~l~~rl~~~eee~k~lke~l~~k~~elq~ 392 (1091)
+.++-...++-.+..+||+||--++..+.-+-+
T Consensus 601 KqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~ 633 (786)
T PF05483_consen 601 KQVENKNKNIEELQQENKALKKKITAESKQSNV 633 (786)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556777888999999998877766655543
No 195
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=88.73 E-value=0.13 Score=64.88 Aligned_cols=68 Identities=19% Similarity=0.212 Sum_probs=0.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001374 236 LKGNIEQCEREINSAKYELHIV-SKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLV 303 (1091)
Q Consensus 236 LkERIenlEKEne~LK~EL~~L-qeELEiL~EElE~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l~ 303 (1091)
+.+++..++.+|..|+..+... ...+..+...++...+....+..+.....+++..++.++..+..-+
T Consensus 457 l~erl~rLe~ENk~Lk~~~e~~~~e~~~~L~~~Leda~~~~~~Le~~~~~~~~~~~~lq~qle~lq~~l 525 (713)
T PF05622_consen 457 LRERLLRLEHENKRLKEKQEESEEEKLEELQSQLEDANRRKEKLEEENREANEKILELQSQLEELQKSL 525 (713)
T ss_dssp ---------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777776555444 2334445555555555556666666666666666666665555433
No 196
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=88.41 E-value=24 Score=42.61 Aligned_cols=33 Identities=24% Similarity=0.168 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCcccCCCCc
Q 001374 951 AERLAECQETILLLGKQLKSLRPQSEVIGSPYS 983 (1091)
Q Consensus 951 eeKLAEcQeTI~sLEKQLKsLa~q~e~~~~~~~ 983 (1091)
-+.--+.|.-+.+|++-+..+....+-++-+++
T Consensus 399 ~~~~leaq~~~~slek~~~~~~sl~~~i~~~~~ 431 (622)
T COG5185 399 KSRKLEAQGIFKSLEKTLRQYDSLIQNITRSRS 431 (622)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHH
Confidence 344456778888888888877776666655544
No 197
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=88.24 E-value=11 Score=38.25 Aligned_cols=85 Identities=14% Similarity=0.228 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 001374 167 QKLQDFVLTKTKQWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCERE 246 (1091)
Q Consensus 167 qki~~~~~~~~~e~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIenlEKE 246 (1091)
+-+.+|+..-+++.+..-..+......+..+++.+...++...+.....++++.++...++++..++.-++.....++-.
T Consensus 39 r~m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~k 118 (126)
T PF07889_consen 39 RSMSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGK 118 (126)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777777777777777777777777777777777777777777777777777777777777777777666666666
Q ss_pred HHHHH
Q 001374 247 INSAK 251 (1091)
Q Consensus 247 ne~LK 251 (1091)
+.+++
T Consensus 119 i~~ie 123 (126)
T PF07889_consen 119 IDEIE 123 (126)
T ss_pred HHHHh
Confidence 65554
No 198
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=88.14 E-value=46 Score=36.73 Aligned_cols=56 Identities=20% Similarity=0.158 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001374 248 NSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLV 303 (1091)
Q Consensus 248 e~LK~EL~~LqeELEiL~EElE~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l~ 303 (1091)
..|..++..+..++..+..++.......+-...+......++..++..++.|+.++
T Consensus 153 ~~l~ae~~~l~~~~~~le~el~s~~~rq~L~~~qrdl~~~~~~~l~~~l~~Lq~~l 208 (240)
T PF12795_consen 153 WLLQAELAALEAQIEMLEQELLSNNNRQELLQLQRDLLKARIQRLQQQLQALQNLL 208 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555666666666666666666666554
No 199
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=88.04 E-value=64 Score=39.61 Aligned_cols=90 Identities=11% Similarity=0.027 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 001374 207 TLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGV 286 (1091)
Q Consensus 207 aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIenlEKEne~LK~EL~~LqeELEiL~EElE~s~qsaeal~KQ~lEl~ 286 (1091)
-+.+++...+..+..+.++++....++...++.+..+...+.+++..+..+.=+.+.+.+-+......-+.+..++.|..
T Consensus 202 ~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~Ele 281 (596)
T KOG4360|consen 202 DCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELE 281 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34455566666666666667777777777777777777777777777666666655555555555555555555555555
Q ss_pred HHHHHHHHHH
Q 001374 287 KKIAKLEAEC 296 (1091)
Q Consensus 287 KKLaKLEaEc 296 (1091)
.+.++..+.+
T Consensus 282 DkyAE~m~~~ 291 (596)
T KOG4360|consen 282 DKYAECMQML 291 (596)
T ss_pred HHHHHHHHHH
Confidence 5544444433
No 200
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=88.03 E-value=76 Score=39.11 Aligned_cols=242 Identities=17% Similarity=0.156 Sum_probs=124.6
Q ss_pred HHHhhhhHH----HHHHHHHHHHhHHHHhhh----hhhHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHH
Q 001374 110 EEAVSGWEK----AEAEALALKNHLESVTLS----KLTAEDRAAHLDGALKECMRQIRNLKEEHEQKLQDFVLTKTKQWD 181 (1091)
Q Consensus 110 eeav~gwek----ae~e~~~lK~~Le~~~~q----~~~le~rv~hLd~aLKec~~qLr~~reeqeqki~~~~~~~~~e~e 181 (1091)
||==.-|.| .|..+.+|+.+.+..... ..-+-++.-.||.|+-.-...++..+. +|--++....+-|+
T Consensus 225 eElE~rW~~lq~l~Ee~l~al~gq~ev~~~~~~~E~~~l~eq~~~ld~AV~~Ltk~v~~~q~----sL~kvl~aE~kaR~ 300 (531)
T PF15450_consen 225 EELESRWQKLQELTEERLRALQGQQEVGLGGIQSEESKLLEQCRKLDEAVAQLTKFVQQNQK----SLNKVLNAEQKARD 300 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHH----HHHHHHhhHHHHHH
Confidence 343356766 578888888888854433 344566777777776555544444433 56666677777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 001374 182 KIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKEL 261 (1091)
Q Consensus 182 ~~~~ELEaKLaElEkeLeelkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIenlEKEne~LK~EL~~LqeEL 261 (1091)
.--.-++.++.++...+... +.++... -.-......+.+.++++..+-++..+..|...|..+...+
T Consensus 301 ~k~~~e~sk~eeL~~~L~~~---lea~q~a----------gkla~Qe~~~~ld~LqEksqile~sv~~l~~~lkDLd~~~ 367 (531)
T PF15450_consen 301 AKEKLEESKAEELATKLQEN---LEAMQLA----------GKLAQQETQSELDLLQEKSQILEDSVAELMRQLKDLDDHI 367 (531)
T ss_pred HHhHHHHhhHHHHHHHHHHH---HHHHHHh----------hhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77667777777776655443 1121111 1111222345566666666666666666666666666665
Q ss_pred HHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHhhhcCCcCCccccCCCCCCC
Q 001374 262 EIRNEEKNMSMRSAEA-ANKQHMEGVKKIAKLEAECQRLRGLVRKKLPGPAALAQMKMEVESLGRDYGDSRLKRSPVKPT 340 (1091)
Q Consensus 262 EiL~EElE~s~qsaea-l~KQ~lEl~KKLaKLEaEcqrLr~l~rk~lpgpaa~a~mk~ev~~l~~~~~~~r~rr~~~~~~ 340 (1091)
-.+.-.+..-.+.+.. +..-..+....+.+.-..+..|+.-+-+.+ --++.=||+|+++..+...+--..++
T Consensus 368 ~aLs~rld~qEqtL~~rL~e~~~e~~~~~r~~lekl~~~q~e~~~~l------~~v~eKVd~LpqqI~~vs~Kc~~~Ks- 440 (531)
T PF15450_consen 368 LALSWRLDLQEQTLNLRLSEAKNEWESDERKSLEKLDQWQNEMEKHL------KEVQEKVDSLPQQIEEVSDKCDLHKS- 440 (531)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhhhHHHHHHHHHHHHHHh-
Confidence 5555554444333322 111112223333333333444444443332 34555566666544332111000000
Q ss_pred CCCCCCCcccchhhhHhhhhhhHHHHHHHHhHHHHHHHHHHHHHhhhhhHHHHH
Q 001374 341 SPHLSPVSEFSLDNVQKFQKENEFLTERLLAMEEETKMLKEALAKRNSELQASR 394 (1091)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~l~~rl~~~eee~k~lke~l~~k~~elq~sr 394 (1091)
-.+.-. ..--.+-+-+..++|+.|+...+-+|..+
T Consensus 441 ------d~d~kI-------------dtE~k~R~~eV~~vRqELa~lLssvQ~~~ 475 (531)
T PF15450_consen 441 ------DSDTKI-------------DTEGKAREREVGAVRQELATLLSSVQLLK 475 (531)
T ss_pred ------hhhhhc-------------cHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 000000 01112334566788899988888888554
No 201
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=88.00 E-value=65 Score=38.28 Aligned_cols=30 Identities=17% Similarity=0.194 Sum_probs=15.8
Q ss_pred hhhhHHHHHhhhhHHHHHHHHHHHhhhHHH
Q 001374 136 SKLTAEDRAAHLDGALKECMRQIRNLKEEH 165 (1091)
Q Consensus 136 q~~~le~rv~hLd~aLKec~~qLr~~reeq 165 (1091)
-..-+++|+..+..-|.+...+|...|+++
T Consensus 172 ~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~ 201 (444)
T TIGR03017 172 AALWFVQQIAALREDLARAQSKLSAYQQEK 201 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 334455555555555555555555555543
No 202
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=87.88 E-value=49 Score=39.33 Aligned_cols=27 Identities=7% Similarity=0.207 Sum_probs=17.6
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 805 KFSLEEFEELKLEKDNLATDLARCTEN 831 (1091)
Q Consensus 805 ~~s~EelEqLEsEkeelE~eLee~~ek 831 (1091)
.|..+++.+++.++...+..+..++.+
T Consensus 174 ~fl~~ql~~~~~~l~~ae~~l~~fr~~ 200 (444)
T TIGR03017 174 LWFVQQIAALREDLARAQSKLSAYQQE 200 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566777777777777777665543
No 203
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=87.84 E-value=7.5 Score=42.74 Aligned_cols=72 Identities=21% Similarity=0.275 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 001374 841 ETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVNLLRAKIESLENELQDEKMSHHNA 912 (1091)
Q Consensus 841 elE~~LeELesQLesLqeS~selEeqLk~~~e~ledLesrL~eLeaElkeLqeKVesLE~ELe~ek~~~eEl 912 (1091)
++.....+++..++.+++.+.++-.++..+...|+..+.++..++.+..+|.++...|..+..+++....++
T Consensus 132 d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~EL 203 (290)
T COG4026 132 DLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDEL 203 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHh
Confidence 444445555555555555555444455555555555566666666666666666665555555544444433
No 204
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=87.73 E-value=30 Score=37.43 Aligned_cols=107 Identities=21% Similarity=0.244 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 822 ATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVNLLRAKIESLENE 901 (1091)
Q Consensus 822 E~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selEeqLk~~~e~ledLesrL~eLeaElkeLqeKVesLE~E 901 (1091)
+.-|.--+.-++.+..++++++.-+.+....|...+........-.......+..|..-+...+..+.....-......+
T Consensus 59 eAaL~GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~e 138 (188)
T PF05335_consen 59 EAALAGKQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQE 138 (188)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555667777777777777777777777777777777777777777777777778888888888888888889999
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHhhhh
Q 001374 902 LQDEKMSHHNAMAKCKELEEQLQRNEN 928 (1091)
Q Consensus 902 Le~ek~~~eEleaK~~eLEeQLe~~~~ 928 (1091)
+......+.....|+..|..+|.....
T Consensus 139 l~eK~qLLeaAk~Rve~L~~QL~~Ar~ 165 (188)
T PF05335_consen 139 LAEKTQLLEAAKRRVEELQRQLQAARA 165 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999886553
No 205
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=87.71 E-value=28 Score=35.67 Aligned_cols=24 Identities=17% Similarity=0.324 Sum_probs=8.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHH
Q 001374 866 QLKCMAESYRSLETHAQELEAEVN 889 (1091)
Q Consensus 866 qLk~~~e~ledLesrL~eLeaElk 889 (1091)
....+...++.+...+.....++.
T Consensus 95 ~~~~l~~~~~~~~~~~k~~kee~~ 118 (151)
T PF11559_consen 95 KERQLQKQLKSLEAKLKQEKEELQ 118 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 206
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=87.61 E-value=31 Score=44.06 Aligned_cols=35 Identities=14% Similarity=0.102 Sum_probs=20.0
Q ss_pred HHHHhhhhhhHHHHHhhhhHHHHHHHHHHHhhhHH
Q 001374 130 LESVTLSKLTAEDRAAHLDGALKECMRQIRNLKEE 164 (1091)
Q Consensus 130 Le~~~~q~~~le~rv~hLd~aLKec~~qLr~~ree 164 (1091)
.+.+.....-+++|+..|..-|.+..++|...|.+
T Consensus 189 ~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~ 223 (754)
T TIGR01005 189 SESNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQ 223 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445556666666666666666666666554
No 207
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=87.46 E-value=74 Score=38.33 Aligned_cols=163 Identities=17% Similarity=0.156 Sum_probs=77.0
Q ss_pred hhhhhHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 135 LSKLTAEDRAAHLDGALKECMRQIRNLKEEHEQKLQDFVLTKTKQWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQE 214 (1091)
Q Consensus 135 ~q~~~le~rv~hLd~aLKec~~qLr~~reeqeqki~~~~~~~~~e~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLEe 214 (1091)
+.++.|+-|+.-|++-+|+-.=--...-.|.+.|=.++..++-++- .-.+..++.+++.+..++..+...+-.
T Consensus 250 qEnlqLvhR~h~LEEq~reqElraeE~l~Ee~rrhrEil~k~eRea-------sle~Enlqmr~qqleeentelRs~~ar 322 (502)
T KOG0982|consen 250 QENLQLVHRYHMLEEQRREQELRAEESLSEEERRHREILIKKEREA-------SLEKENLQMRDQQLEEENTELRSLIAR 322 (502)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777776665432222333333333344444333331 122222333333334444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH--------
Q 001374 215 RSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGV-------- 286 (1091)
Q Consensus 215 lqeeI~EL~eeiErlEgEi~LLkERIenlEKEne~LK~EL~~LqeELEiL~EElE~s~qsaeal~KQ~lEl~-------- 286 (1091)
+...+.++.....+...++..+..++.-..+...+.-.-|..-+++.+...+-++.+.+.+..++.......
T Consensus 323 lksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ekeatqELieelrkelehlr~~kl~~a~p~rgrsS 402 (502)
T KOG0982|consen 323 LKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEEKEATQELIEELRKELEHLRRRKLVLANPVRGRSS 402 (502)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCchh
Confidence 444444444444444555555555555555444444444444555555555555555555544444444333
Q ss_pred HHHHHHHHHHHHHhhhhh
Q 001374 287 KKIAKLEAECQRLRGLVR 304 (1091)
Q Consensus 287 KKLaKLEaEcqrLr~l~r 304 (1091)
.....|+.++.+++.=-|
T Consensus 403 aRe~eleqevkrLrq~nr 420 (502)
T KOG0982|consen 403 AREIELEQEVKRLRQPNR 420 (502)
T ss_pred HHHHHHHHHHHHhccccc
Confidence 345556666666554433
No 208
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=87.45 E-value=11 Score=41.55 Aligned_cols=34 Identities=24% Similarity=0.216 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 001374 225 EKSQAEAEIELLKGNIEQCEREINSAKYELHIVS 258 (1091)
Q Consensus 225 eiErlEgEi~LLkERIenlEKEne~LK~EL~~Lq 258 (1091)
+.+.++++.+..++|++.++.++.+|...+..+-
T Consensus 157 eleele~e~ee~~erlk~le~E~s~LeE~~~~l~ 190 (290)
T COG4026 157 ELEELEAEYEEVQERLKRLEVENSRLEEMLKKLP 190 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 3333444444444555555555444444443333
No 209
>KOG4787 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.32 E-value=71 Score=39.77 Aligned_cols=187 Identities=17% Similarity=0.190 Sum_probs=115.5
Q ss_pred hHHHHHHHHHHHHhHHHHhhhhhhHHHHHhhhhHHHH-----HHHHHHHhhhHHHH-----HHHHHHHHH---HhhhHHH
Q 001374 116 WEKAEAEALALKNHLESVTLSKLTAEDRAAHLDGALK-----ECMRQIRNLKEEHE-----QKLQDFVLT---KTKQWDK 182 (1091)
Q Consensus 116 wekae~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLK-----ec~~qLr~~reeqe-----qki~~~~~~---~~~e~e~ 182 (1091)
.+-|+-++..|+...+-+..-+--|-.|+..||.|-+ +...-+.-.++--+ .|..-.+++ +.-+.-.
T Consensus 334 ~~~~~~~~~~~~Tr~Er~Er~~D~L~rri~~~~~~~~R~~~s~A~~K~~E~K~~~~~~~~~~r~i~~~~~~~~~~~~~s~ 413 (852)
T KOG4787|consen 334 LELAESQVQHLNTKIERLEKTNDHLNKKIVELEADCKRGGVTSAHSKAGEFKLTPEMEKDMSKMIVTISELERKNLELTT 413 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHhhhhhcChHhHhHHHHHHHHHHHHHHhcccHHH
Confidence 4556788999999999999999999999999997643 33333332222111 111111111 1111111
Q ss_pred HHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 001374 183 IRLEFEAKIA----------NFEQELLRSAAENATLSRSL-QERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAK 251 (1091)
Q Consensus 183 ~~~ELEaKLa----------ElEkeLeelkaEl~aLeeqL-EelqeeI~EL~eeiErlEgEi~LLkERIenlEKEne~LK 251 (1091)
.+..|+++.. ....++..+++++..+..-+ +.--..+..|...++++.-.-.+|..|+.-..++..+--
T Consensus 414 ~~r~L~~~~~~~~~~~~~~~s~~~Ei~~~QA~M~E~~Dt~~~~dV~~~~sL~~~LeqAsK~CRIL~~RL~K~~R~q~R~~ 493 (852)
T KOG4787|consen 414 QVKQLETKVTPKPNFVVPSGTTTTELRKEQAQMNELKDTVFKSDVQKVISLATKLEQANKQCRILNERLNKLHRKQVRDG 493 (852)
T ss_pred HHHHHhhccccchhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHhHHHHHHHhhh
Confidence 2222222211 01334455555554444332 112223455677777777778888888888777655554
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001374 252 YELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGL 302 (1091)
Q Consensus 252 ~EL~~LqeELEiL~EElE~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l 302 (1091)
.--......+..+..++..+..-.-.+++++....+++++++..|..|+.-
T Consensus 494 ~~~~~d~~kIK~LE~e~R~S~~Ls~~L~~ElE~~~~~~~~~e~~~evL~~~ 544 (852)
T KOG4787|consen 494 EIQYSDELKIKILELEKRLSEKLAIDLVSELEGKIPTIDEIEQCCEVLAAV 544 (852)
T ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHhHHHHHHHHHHHH
Confidence 444456667888888999988888889999999999999999999877654
No 210
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=87.27 E-value=23 Score=36.72 Aligned_cols=37 Identities=16% Similarity=0.222 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Q 001374 889 NLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQR 925 (1091)
Q Consensus 889 keLqeKVesLE~ELe~ek~~~eEleaK~~eLEeQLe~ 925 (1091)
..++.++.....-|..++.-+.....+|..|+..+..
T Consensus 93 ~~~e~~i~~~~~~I~~Lq~~~~~~~~ki~~Le~~i~~ 129 (146)
T PF08702_consen 93 YILETKIINQPSNIRVLQNILRSNRQKIQRLEQDIDQ 129 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555666666555543
No 211
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=87.27 E-value=65 Score=38.65 Aligned_cols=148 Identities=16% Similarity=0.167 Sum_probs=93.4
Q ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 001374 161 LKEEHEQKLQDFVLTKTKQWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNI 240 (1091)
Q Consensus 161 ~reeqeqki~~~~~~~~~e~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERI 240 (1091)
+|+.-.+-+.++...-..+.+....-+...|.+.+.-..++..++....+.+......|..+...|-..++=+.|.+-|+
T Consensus 250 LR~~l~~~l~~tan~lr~Q~~~ve~af~~ri~etqdar~kL~~ql~k~leEi~~~e~~I~~le~airdK~~pLKVAqTRl 329 (421)
T KOG2685|consen 250 LREALDQTLRETANDLRTQADAVELAFKKRIRETQDARNKLEWQLAKTLEEIADAENNIEALERAIRDKEGPLKVAQTRL 329 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccccHHHHHHHH
Confidence 44444455555555555566666666666666666666666666666666666677777777777777777788888887
Q ss_pred HHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhhhccC
Q 001374 241 EQC----------EREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAEC---QRLRGLVRKKL 307 (1091)
Q Consensus 241 enl----------EKEne~LK~EL~~LqeELEiL~EElE~s~qsaeal~KQ~lEl~KKLaKLEaEc---qrLr~l~rk~l 307 (1091)
++- ..-.-.|-.|++.+..-+..+..+++..+..+..+......+..+|+-...-+ .+.=++.|++.
T Consensus 330 e~Rt~RPnvELCrD~AQ~~L~~EV~~l~~t~~~L~~kL~eA~~~l~~L~~~~~rLe~di~~k~nsL~ID~ekcm~mR~~y 409 (421)
T KOG2685|consen 330 ENRTYRPNVELCRDQAQYRLVDEVHELDDTVAALKEKLDEAEDSLKLLVNHRARLERDIAIKANSLFIDREKCMLMRKSY 409 (421)
T ss_pred HHcccCCchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhccHHHHHHHHhcC
Confidence 752 12233456667777777777777777776666666666666666665544433 33334556666
Q ss_pred C
Q 001374 308 P 308 (1091)
Q Consensus 308 p 308 (1091)
|
T Consensus 410 P 410 (421)
T KOG2685|consen 410 P 410 (421)
T ss_pred C
Confidence 6
No 212
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=87.07 E-value=1.3e+02 Score=40.71 Aligned_cols=37 Identities=8% Similarity=0.065 Sum_probs=24.5
Q ss_pred HHHhhhhHHH---HHHHHHHHHhHHHHhhhhhhHHHHHhh
Q 001374 110 EEAVSGWEKA---EAEALALKNHLESVTLSKLTAEDRAAH 146 (1091)
Q Consensus 110 eeav~gweka---e~e~~~lK~~Le~~~~q~~~le~rv~h 146 (1091)
+.|..-+.++ ...+..++++++.+..+...++.++..
T Consensus 51 ~~tl~~l~~~~~~~~~~~~~~~~i~~ap~~~~~~~~~l~~ 90 (1109)
T PRK10929 51 QSALNWLEERKGSLERAKQYQQVIDNFPKLSAELRQQLNN 90 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 3444444444 467778888888888887777766654
No 213
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=86.99 E-value=72 Score=42.31 Aligned_cols=81 Identities=17% Similarity=0.214 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 001374 810 EFEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVN 889 (1091)
Q Consensus 810 elEqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selEeqLk~~~e~ledLesrL~eLeaElk 889 (1091)
.+.+.+.++.++...+++...+++....++..+...+......-..+.+.+..++..+......+..++..+.+++..++
T Consensus 435 ~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~ 514 (1041)
T KOG0243|consen 435 RYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLK 514 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566667777777777777777777777666666666333333333333333333444444444444444444444433
Q ss_pred H
Q 001374 890 L 890 (1091)
Q Consensus 890 e 890 (1091)
.
T Consensus 515 ~ 515 (1041)
T KOG0243|consen 515 E 515 (1041)
T ss_pred H
Confidence 3
No 214
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=86.95 E-value=26 Score=38.96 Aligned_cols=29 Identities=14% Similarity=0.205 Sum_probs=12.2
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhh
Q 001374 898 LENELQDEKMSHHNAMAKCKELEEQLQRN 926 (1091)
Q Consensus 898 LE~ELe~ek~~~eEleaK~~eLEeQLe~~ 926 (1091)
.+.+....+..+..+...+..|.+++.++
T Consensus 72 a~~er~~~~~~i~r~~eey~~Lk~~in~~ 100 (230)
T PF10146_consen 72 AESERNKRQEKIQRLYEEYKPLKDEINEL 100 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444444444443
No 215
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=86.85 E-value=80 Score=38.07 Aligned_cols=37 Identities=16% Similarity=0.260 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 808 LEEFEELKLEKDNLATDLARCTENLEMTKSQLYETEQ 844 (1091)
Q Consensus 808 ~EelEqLEsEkeelE~eLee~~eklEel~~qLqelE~ 844 (1091)
+|.+..++..+..++.+|+.++++-..-...-..++.
T Consensus 251 le~Lq~aEqsl~dlQk~Lekar~e~rnvavek~~ler 287 (575)
T KOG4403|consen 251 LEGLQRAEQSLEDLQKRLEKAREEQRNVAVEKLDLER 287 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHH
Confidence 3555666666777777777666554433333333333
No 216
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.79 E-value=46 Score=40.19 Aligned_cols=29 Identities=24% Similarity=0.218 Sum_probs=23.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001374 942 KQDRDLAAAAERLAECQETILLLGKQLKS 970 (1091)
Q Consensus 942 kqEkEIaaAeeKLAEcQeTI~sLEKQLKs 970 (1091)
+++.+|....+..-+.|+++++++.+|.+
T Consensus 400 Kq~~DI~Kil~etreLqkq~ns~se~L~R 428 (521)
T KOG1937|consen 400 KQEQDIVKILEETRELQKQENSESEALNR 428 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35668888888888888888888888864
No 217
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=86.77 E-value=71 Score=37.39 Aligned_cols=75 Identities=15% Similarity=0.143 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001374 198 LLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSM 272 (1091)
Q Consensus 198 LeelkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIenlEKEne~LK~EL~~LqeELEiL~EElE~s~ 272 (1091)
-+.++.+++.|..++-..+.-+........++++-+.-+.++-..++-....+..+..+-+++-..++.|++...
T Consensus 101 ~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~l 175 (401)
T PF06785_consen 101 SEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEAL 175 (401)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHH
Confidence 344445555555555545554544444444445444444444444444444444444444444444444444433
No 218
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=86.26 E-value=99 Score=38.57 Aligned_cols=58 Identities=19% Similarity=0.117 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 001374 247 INSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLVR 304 (1091)
Q Consensus 247 ne~LK~EL~~LqeELEiL~EElE~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l~r 304 (1091)
......+++..+.++..+..-+......+.+....+..+.-++.+++..|...+--.+
T Consensus 427 ~~ei~~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~e 484 (581)
T KOG0995|consen 427 LDEISEELHEAENELETLQEHFSNKASTIEEKIQILGEIELELKKAESKYELKKEEAE 484 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666666666666666666666666666666666666655554443
No 219
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=86.13 E-value=17 Score=41.25 Aligned_cols=41 Identities=20% Similarity=0.269 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 818 KDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQK 858 (1091)
Q Consensus 818 keelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqe 858 (1091)
+..-+..+..++.++.++..+|++-+.+|.+|+.||..-++
T Consensus 63 LQQKEV~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrE 103 (305)
T PF15290_consen 63 LQQKEVCIRHLKAKLKESENRLHDRETEIDELKSQLARMRE 103 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34445556667777777778888888888888888776655
No 220
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=86.06 E-value=42 Score=36.36 Aligned_cols=97 Identities=13% Similarity=0.191 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 001374 811 FEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVNL 890 (1091)
Q Consensus 811 lEqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selEeqLk~~~e~ledLesrL~eLeaElke 890 (1091)
|++|+.++.+.+.-+.+....|...+..+..+.......+.++..+...+..+...+.............|.+...=+..
T Consensus 69 veqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~eK~qLLea 148 (188)
T PF05335_consen 69 VEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQELAEKTQLLEA 148 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666666666666666666666666666666666666655555555555555555555554444444444
Q ss_pred HHHHHHHHHHHHHHHHh
Q 001374 891 LRAKIESLENELQDEKM 907 (1091)
Q Consensus 891 LqeKVesLE~ELe~ek~ 907 (1091)
.+.+|+.|...|..-+.
T Consensus 149 Ak~Rve~L~~QL~~Ar~ 165 (188)
T PF05335_consen 149 AKRRVEELQRQLQAARA 165 (188)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444443333
No 221
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=86.03 E-value=67 Score=36.38 Aligned_cols=146 Identities=20% Similarity=0.273 Sum_probs=106.9
Q ss_pred hhHHHHHHHHHHHHhHHHHh--hhhhhHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHHHH------------------H
Q 001374 115 GWEKAEAEALALKNHLESVT--LSKLTAEDRAAHLDGALKECMRQIRNLKEEHEQKLQDFV------------------L 174 (1091)
Q Consensus 115 gwekae~e~~~lK~~Le~~~--~q~~~le~rv~hLd~aLKec~~qLr~~reeqeqki~~~~------------------~ 174 (1091)
-.-+-|-|...++-++..+. ++=.+++-|-.-||-|+..-.--|...-++...||-++- +
T Consensus 137 rlA~kEQEmqe~~sqi~~lK~qq~Ps~~qlR~~llDPAinl~F~rlK~ele~tk~Klee~QnelsAwkFTPdS~tGK~LM 216 (330)
T KOG2991|consen 137 RLATKEQEMQECTSQIQYLKQQQQPSVAQLRSTLLDPAINLFFLRLKGELEQTKDKLEEAQNELSAWKFTPDSKTGKMLM 216 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeecCCCcchHHHH
Confidence 44455677777777777765 445678888888998888877777777777766666642 2
Q ss_pred HHhhhHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 001374 175 TKTKQWDKI-----RLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINS 249 (1091)
Q Consensus 175 ~~~~e~e~~-----~~ELEaKLaElEkeLeelkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIenlEKEne~ 249 (1091)
.|.+-+-.- +.--+-+|++++.+|+--+.....+..+-+++..=+.+|.+..+...+-|-+|+++++..+++|.+
T Consensus 217 AKCR~L~qENeElG~q~s~Gria~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~ 296 (330)
T KOG2991|consen 217 AKCRTLQQENEELGHQASEGRIAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQR 296 (330)
T ss_pred HHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHH
Confidence 222211111 122345677888888888888888888888888888999999999999999999999999999988
Q ss_pred HHHHHHHHHHH
Q 001374 250 AKYELHIVSKE 260 (1091)
Q Consensus 250 LK~EL~~LqeE 260 (1091)
|+..+..+.+.
T Consensus 297 l~k~~~q~sqa 307 (330)
T KOG2991|consen 297 LKKGLEQVSQA 307 (330)
T ss_pred HHHHHHHHHHH
Confidence 88877776654
No 222
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=85.98 E-value=1.2e+02 Score=39.23 Aligned_cols=118 Identities=20% Similarity=0.157 Sum_probs=69.9
Q ss_pred HHhhhhhhHHHHHhhhhHHHHHHHHHHHhhhH------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 132 SVTLSKLTAEDRAAHLDGALKECMRQIRNLKE------EHEQKLQDFVLTKTKQWDKIRLEFEAKIANFEQELLRSAAEN 205 (1091)
Q Consensus 132 ~~~~q~~~le~rv~hLd~aLKec~~qLr~~re------eqeqki~~~~~~~~~e~e~~~~ELEaKLaElEkeLeelkaEl 205 (1091)
..++.-..+..-|..|++-||+.-+|||.++- -+-|+++++ +.-++.++.+.+.+|+.+.+++
T Consensus 82 vstqetriyRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~t-----------i~~~q~d~ke~etelE~~~srl 150 (1265)
T KOG0976|consen 82 VSTQETRIYRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDT-----------IQGAQDDKKENEIEIENLNSRL 150 (1265)
T ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHhhHHHH
Confidence 33444455666677778888888888876643 333444444 3445556666666666677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 001374 206 ATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKE 260 (1091)
Q Consensus 206 ~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIenlEKEne~LK~EL~~LqeE 260 (1091)
..+...|.....+|..+.+.+-.....+.-+...++..-.++++++..+....++
T Consensus 151 h~le~eLsAk~~eIf~~~~~L~nk~~~lt~~~~q~~tkl~e~~~en~~le~k~~k 205 (1265)
T KOG0976|consen 151 HKLEDELSAKAHDIFMIGEDLHDKNEELNEFNMEFQTKLAEANREKKALEEKLEK 205 (1265)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777666666655555555555555555555555444444433333
No 223
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=85.81 E-value=99 Score=38.15 Aligned_cols=49 Identities=29% Similarity=0.313 Sum_probs=27.1
Q ss_pred HHHHHhHHHHHHHHHHHHHh----hhhhHHHHHHHHHHhh--hhHHHHHHHHhhh
Q 001374 366 TERLLAMEEETKMLKEALAK----RNSELQASRNLCAKTA--SKLQSLEAQMQTS 414 (1091)
Q Consensus 366 ~~rl~~~eee~k~lke~l~~----k~~elq~sr~~~a~t~--~kl~~~e~q~~~~ 414 (1091)
-.-|.-++++....+..+.- |.+|+|+.|+..+.-+ +.-..+|.-+..+
T Consensus 343 ~~el~~~~ee~~~~~s~~~~k~~~ke~E~q~lr~~l~~~~~~s~~~elE~rl~~l 397 (511)
T PF09787_consen 343 YQELYHYREELSRQKSPLQLKLKEKESEIQKLRNQLSARASSSSWNELESRLTQL 397 (511)
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhccCCcHhHHHHHhhc
Confidence 33344455555555554443 7788888888776555 3334455555444
No 224
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=85.64 E-value=19 Score=36.34 Aligned_cols=42 Identities=19% Similarity=0.299 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhh
Q 001374 886 AEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNE 927 (1091)
Q Consensus 886 aElkeLqeKVesLE~ELe~ek~~~eEleaK~~eLEeQLe~~~ 927 (1091)
.=+.+|..+++.|+..+..++++-+.+..++.+|+..|..+-
T Consensus 70 ~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l 111 (119)
T COG1382 70 EAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKAL 111 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334556666666666666667777777777777777776543
No 225
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=85.59 E-value=25 Score=35.56 Aligned_cols=45 Identities=20% Similarity=0.254 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 001374 877 LETHAQELEAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEE 921 (1091)
Q Consensus 877 LesrL~eLeaElkeLqeKVesLE~ELe~ek~~~eEleaK~~eLEe 921 (1091)
+......++..+..+...+..++.++.+++..+..+...+..+..
T Consensus 92 ~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~ 136 (140)
T PRK03947 92 LDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQ 136 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555555555555555555555555555554443
No 226
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.53 E-value=1e+02 Score=38.19 Aligned_cols=142 Identities=20% Similarity=0.220 Sum_probs=68.1
Q ss_pred HHHHhhhhhhHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 130 LESVTLSKLTAEDRAAHLDGALKECMRQIRNLKEEHEQKLQDFVLTKTKQWDKIRLEFEAKIANFEQELLRSAAENATLS 209 (1091)
Q Consensus 130 Le~~~~q~~~le~rv~hLd~aLKec~~qLr~~reeqeqki~~~~~~~~~e~e~~~~ELEaKLaElEkeLeelkaEl~aLe 209 (1091)
|.+...+-..+-.||-.|+.-||..-..|-.+++|.++-...+ +.+-.....++.+-..+..++-+++-.-..+-
T Consensus 95 LqESaakE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~-----sd~~e~~~~~E~qR~rlr~elKe~KfRE~Rll 169 (772)
T KOG0999|consen 95 LQESAAKEEYYLQKILELENELKQLRQELTNVQEENERLEKVH-----SDLKESNAAVEDQRRRLRDELKEYKFREARLL 169 (772)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhhhcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444567888999999999999999999988533222 22222233333333333333333222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 001374 210 RSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVK 287 (1091)
Q Consensus 210 eqLEelqeeI~EL~eeiErlEgEi~LLkERIenlEKEne~LK~EL~~LqeELEiL~EElE~s~qsaeal~KQ~lEl~K 287 (1091)
..+.++.++...|.... .. +...+-+.+.|+.+|..+.++.+.++...+...+--.-+.+|+.+...
T Consensus 170 seYSELEEENIsLQKqV-------s~----LR~sQVEyEglkheikRleEe~elln~q~ee~~~Lk~IAekQlEEALe 236 (772)
T KOG0999|consen 170 SEYSELEEENISLQKQV-------SN----LRQSQVEYEGLKHEIKRLEEETELLNSQLEEAIRLKEIAEKQLEEALE 236 (772)
T ss_pred HHHHHHHHhcchHHHHH-------HH----HhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222222222221 11 112222334555555555555555555555554444445555554433
No 227
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.52 E-value=1e+02 Score=38.17 Aligned_cols=219 Identities=20% Similarity=0.236 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcchhhHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhHHHHhhhhhhHHHHHhhhhHHHH
Q 001374 73 QVQTMEEQIKELNEKLSAANSEISAKEDLVKQHTKVAEEAVSGWEKAEAEALALKNHLESVTLSKLTAEDRAAHLDGALK 152 (1091)
Q Consensus 73 ~~~~~~~~~k~l~ekls~a~~~~~~kd~lvkqh~kvaeeav~gwekae~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLK 152 (1091)
+++..+...|.|.||.++...+.+.|+.-.+ .+|.+.-....-.+-++.++..||=||.
T Consensus 332 eIe~~~ke~kdLkEkv~~lq~~l~eke~sl~---------------------dlkehassLas~glk~ds~Lk~leIalE 390 (654)
T KOG4809|consen 332 EIESFRKENKDLKEKVNALQAELTEKESSLI---------------------DLKEHASSLASAGLKRDSKLKSLEIALE 390 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHhhhhhhhhhHHHHHHH
Confidence 3555678889999999888887766654332 2222222222233334445555555553
Q ss_pred ----HHH---HHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 153 ----ECM---RQIRNLKEEHEQKLQDFVLTKTKQWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEE 225 (1091)
Q Consensus 153 ----ec~---~qLr~~reeqeqki~~~~~~~~~e~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLEelqeeI~EL~ee 225 (1091)
+|- +||-.+.+ +.-|| .-..+++..+..++..+..++..+-...++.+.+-.-+-+..++-.+-...
T Consensus 391 qkkEec~kme~qLkkAh~----~~dda--r~~pe~~d~i~~le~e~~~y~de~~kaqaevdrlLeilkeveneKnDkdkk 464 (654)
T KOG4809|consen 391 QKKEECSKMEAQLKKAHN----IEDDA--RMNPEFADQIKQLEKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKK 464 (654)
T ss_pred HHHHHHHHHHHHHHHHHH----hhHhh--hcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccch
Confidence 232 22222222 12222 235566667777777777766666666666555555444444433333333
Q ss_pred HHHHHHHHHHHHhhHHHH-HHHHHHHHHHHH-------------HHHHH--HHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 001374 226 KSQAEAEIELLKGNIEQC-EREINSAKYELH-------------IVSKE--LEIRNEEKNMSMRSAEAANKQHMEGVKKI 289 (1091)
Q Consensus 226 iErlEgEi~LLkERIenl-EKEne~LK~EL~-------------~LqeE--LEiL~EElE~s~qsaeal~KQ~lEl~KKL 289 (1091)
+..++-.......+..|+ -+++..++.-+. ..++- .+.+.-+++...+..++......-.+.-+
T Consensus 465 iaeler~~kdqnkkvaNlkHk~q~Ekkk~aq~lee~rrred~~~d~sqhlq~eel~~alektkQel~~tkarl~stqqsl 544 (654)
T KOG4809|consen 465 IAELERHMKDQNKKVANLKHKQQLEKKKNAQLLEEVRRREDSMADNSQHLQIEELMNALEKTKQELDATKARLASTQQSL 544 (654)
T ss_pred hhhcCchhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHhhChhhhhhHHHHHHHHH
Confidence 333322111111111111 011111111111 11111 22233345555666677777777778888
Q ss_pred HHHHHHHHHHhhhhhccCCChHHHHHHHHHHh
Q 001374 290 AKLEAECQRLRGLVRKKLPGPAALAQMKMEVE 321 (1091)
Q Consensus 290 aKLEaEcqrLr~l~rk~lpgpaa~a~mk~ev~ 321 (1091)
++-++-+..|+.+-||-| -++--||.+..
T Consensus 545 aEke~HL~nLr~errk~L---ee~lemK~~a~ 573 (654)
T KOG4809|consen 545 AEKEAHLANLRIERRKQL---EEILEMKKPAW 573 (654)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHhhhhhh
Confidence 888888889999988887 34446776555
No 228
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=85.40 E-value=1.2e+02 Score=38.82 Aligned_cols=72 Identities=21% Similarity=0.331 Sum_probs=32.7
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhhh
Q 001374 233 IELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGV---KKIAKLEAECQRLRGLVR 304 (1091)
Q Consensus 233 i~LLkERIenlEKEne~LK~EL~~LqeELEiL~EElE~s~qsaeal~KQ~lEl~---KKLaKLEaEcqrLr~l~r 304 (1091)
+..++.++..+.+....++++...+..+.+..-.........+......+.+.. ....+|-.++..+++.+|
T Consensus 243 i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLkGnIR 317 (670)
T KOG0239|consen 243 IQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEILELKGNIR 317 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCce
Confidence 444444444444444444444444444444433333333333333333333333 444555566666665543
No 229
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=85.16 E-value=26 Score=33.97 Aligned_cols=42 Identities=17% Similarity=0.256 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 001374 879 THAQELEAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELE 920 (1091)
Q Consensus 879 srL~eLeaElkeLqeKVesLE~ELe~ek~~~eEleaK~~eLE 920 (1091)
.-...++.++..+...+..++..+.++...+.++..++.+++
T Consensus 63 ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~~ 104 (105)
T cd00632 63 EARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQAQ 104 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444555555555666666666666666666666655543
No 230
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=85.02 E-value=16 Score=45.45 Aligned_cols=69 Identities=17% Similarity=0.243 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhh
Q 001374 860 NSLAETQLKCMAESYRSLETHAQELEAEVN---LLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNEN 928 (1091)
Q Consensus 860 ~selEeqLk~~~e~ledLesrL~eLeaElk---eLqeKVesLE~ELe~ek~~~eEleaK~~eLEeQLe~~~~ 928 (1091)
++.++..+..+...+..|+.+|..+..++. ....++..++.++..++..+.+-..++..|+.+|.....
T Consensus 438 ~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k 509 (652)
T COG2433 438 NSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELRK 509 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444455555555443333 233455556666666666666666666666666665554
No 231
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=84.72 E-value=30 Score=38.43 Aligned_cols=21 Identities=19% Similarity=0.293 Sum_probs=12.5
Q ss_pred ccchHHHhHhhhccccCCCCC
Q 001374 492 LMDDFLEMEKLACLSNDTNSN 512 (1091)
Q Consensus 492 lMDDFlEmEkLa~~~~~~~~~ 512 (1091)
...|||-+=|++.+-.+.+|.
T Consensus 182 ~~V~~LrlGr~~l~~~t~Dg~ 202 (251)
T PF11932_consen 182 RQVDFLRLGRVALYYQTLDGS 202 (251)
T ss_pred EEEEEEeecchhheeECCCcc
Confidence 455677777777665554443
No 232
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=84.72 E-value=41 Score=38.58 Aligned_cols=94 Identities=16% Similarity=0.235 Sum_probs=60.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhcccchhHhhhhhh
Q 001374 864 ETQLKCMAESYRSLETHAQELEAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNENCAVCSSEADENKIKQ 943 (1091)
Q Consensus 864 EeqLk~~~e~ledLesrL~eLeaElkeLqeKVesLE~ELe~ek~~~eEleaK~~eLEeQLe~~~~~~lk~q~dkdLKikq 943 (1091)
.+|++.+-++++.+. +++.+++.+-..+..-+......+.+....++.++++|++-|.. +.. -.-..+|++
T Consensus 272 NnqL~~l~q~fr~a~-------~~lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~~KqemEe~G~~-msD-GaplvkIkq 342 (384)
T KOG0972|consen 272 NNQLASLMQKFRRAT-------DTLSELREKYKQASVGVSSRTETLDEVMDEIEQLKQEMEEQGAK-MSD-GAPLVKIKQ 342 (384)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhccc-ccC-CchHHHHHH
Confidence 345555555554444 44445555555566666667777888888899999999987751 211 122236666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 944 DRDLAAAAERLAECQETILLLGKQL 968 (1091)
Q Consensus 944 EkEIaaAeeKLAEcQeTI~sLEKQL 968 (1091)
.|+.+.+..+.+-..|.-++-.+
T Consensus 343 --avsKLk~et~~mnv~igv~ehs~ 365 (384)
T KOG0972|consen 343 --AVSKLKEETQTMNVQIGVFEHSI 365 (384)
T ss_pred --HHHHHHHHHHhhhhheehhhHHH
Confidence 78888888888887777666543
No 233
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=84.58 E-value=18 Score=37.81 Aligned_cols=63 Identities=21% Similarity=0.259 Sum_probs=36.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhHHHHHHHHH
Q 001374 807 SLEEFEELKLEKDNLATDLARCTENLEMTKSQLYETE--QLLAEVKAQLASAQKSNSLAETQLKC 869 (1091)
Q Consensus 807 s~EelEqLEsEkeelE~eLee~~eklEel~~qLqelE--~~LeELesQLesLqeS~selEeqLk~ 869 (1091)
+.+++..|..++..+..++..+...+..+..+|..+. +...+|..++..+...+..++..+..
T Consensus 70 s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~ 134 (169)
T PF07106_consen 70 SPEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEK 134 (169)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777776666666666666555 23345555555555544444444433
No 234
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=84.43 E-value=1.3e+02 Score=38.51 Aligned_cols=102 Identities=16% Similarity=0.160 Sum_probs=67.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhcc------cchhHhh-------
Q 001374 873 SYRSLETHAQELEAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNENCAVC------SSEADEN------- 939 (1091)
Q Consensus 873 ~ledLesrL~eLeaElkeLqeKVesLE~ELe~ek~~~eEleaK~~eLEeQLe~~~~~~lk------~q~dkdL------- 939 (1091)
++..++.+-...+.++.+.+..+..+..-+..++.....-..-+.+|..+|..+|...-. .....++
T Consensus 992 rL~q~eaeR~~~reqlrQ~Q~Q~sqYnqvl~~LksS~~~K~~~l~El~qEl~d~GV~AD~gAeeRA~~RRDELh~~Lst~ 1071 (1480)
T COG3096 992 RLEQAEAERTRAREQLRQHQAQLSQYNQVLASLKSSYDTKKELLNELQQELQDIGVRADSGAEERARIRRDELHAQLSTN 1071 (1480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCcCcchHHHHHHHHHHHHHHHhcc
Confidence 444555555555666677777777777777777777777777777888888877751000 0111111
Q ss_pred ---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 001374 940 ---KIKQDRDLAAAAERLAECQETILLLGKQLKSLRPQ 974 (1091)
Q Consensus 940 ---KikqEkEIaaAeeKLAEcQeTI~sLEKQLKsLa~q 974 (1091)
+...|+.|+..+.........|..++++.+.++..
T Consensus 1072 RsRr~~~EkqlT~~E~E~~~L~~~~rK~ErDY~~~Re~ 1109 (1480)
T COG3096 1072 RSRRNQLEKQLTFCEAEMDNLTRKLRKLERDYFEMREQ 1109 (1480)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 44567888888888888888888888888777653
No 235
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=84.40 E-value=77 Score=38.18 Aligned_cols=172 Identities=16% Similarity=0.146 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHH-HHHHHHHHH
Q 001374 807 SLEEFEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRS-LETHAQELE 885 (1091)
Q Consensus 807 s~EelEqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selEeqLk~~~e~led-LesrL~eLe 885 (1091)
+++...++.+....+.+++..+..........++.++..+.+|..++-........+-.++..+.....+ ....++.+.
T Consensus 143 lle~~~q~da~~qq~~~ele~~d~~~~~d~ee~kqlEe~ieeL~qsl~kd~~~~~~l~~e~n~~k~s~~s~~~k~l~al~ 222 (446)
T KOG4438|consen 143 LLELRKQLDAKYQQALKELERFDEDVEEDEEEVKQLEENIEELNQSLLKDFNQQMSLLAEYNKMKKSSTSEKNKILNALK 222 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHhhhHHHHHHHHHHHHHHHhhhhhhcccchhHhhhhhhHHHHHHHHHHHHHHH---
Q 001374 886 AEVNLLRAKIESLENEL----QDEKMSHHNAMAKCKELEEQLQRNENCAVCSSEADENKIKQDRDLAAAAERLAECQ--- 958 (1091)
Q Consensus 886 aElkeLqeKVesLE~EL----e~ek~~~eEleaK~~eLEeQLe~~~~~~lk~q~dkdLKikqEkEIaaAeeKLAEcQ--- 958 (1091)
--+-.+++..+.|...+ ++++..+++..-.+.+.+..+..+......-.....--...+.++.++-.++.+|.
T Consensus 223 llv~tLee~~~~LktqIV~sPeKL~~~leemk~~l~k~k~~~~~l~~K~~iL~ekv~~~qti~~e~~~~lk~i~~~~~e~ 302 (446)
T KOG4438|consen 223 LLVVTLEENANCLKTQIVQSPEKLKEALEEMKDLLQKEKSAMVELQEKAKILEEKVTNLQTIEKELKALLKKISSDGVEY 302 (446)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhhhhh
Q ss_pred ----------HHHHHHHHHHHhhcCCCccc
Q 001374 959 ----------ETILLLGKQLKSLRPQSEVI 978 (1091)
Q Consensus 959 ----------eTI~sLEKQLKsLa~q~e~~ 978 (1091)
++|..|+.|+.-.....+++
T Consensus 303 d~~Et~~v~lke~~~Le~q~e~~~~e~~~l 332 (446)
T KOG4438|consen 303 DSLETKVVELKEILELEDQIELNQLELEKL 332 (446)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 236
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=84.34 E-value=76 Score=35.54 Aligned_cols=29 Identities=17% Similarity=0.434 Sum_probs=17.4
Q ss_pred hcchHHHHHHHHHHHHHHHHHHHHhhhhc
Q 001374 67 VKTNEEQVQTMEEQIKELNEKLSAANSEI 95 (1091)
Q Consensus 67 v~~~~~~~~~~~~~~k~l~ekls~a~~~~ 95 (1091)
+..++.....|+.++..|.+|...++...
T Consensus 47 ~~~~e~~l~~L~~d~~~L~~k~~~~~~~~ 75 (264)
T PF06008_consen 47 LDPLEKELESLEQDVENLQEKATKVSRKA 75 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445556677777777776666555
No 237
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=84.31 E-value=1e+02 Score=37.14 Aligned_cols=17 Identities=18% Similarity=0.229 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHh
Q 001374 284 EGVKKIAKLEAECQRLR 300 (1091)
Q Consensus 284 El~KKLaKLEaEcqrLr 300 (1091)
....++..+++++..++
T Consensus 288 ~~~~~l~~~~~~l~~~~ 304 (457)
T TIGR01000 288 KVKQEITDLNQKLLELE 304 (457)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444443333
No 238
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=84.15 E-value=47 Score=40.16 Aligned_cols=19 Identities=21% Similarity=0.211 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 001374 284 EGVKKIAKLEAECQRLRGL 302 (1091)
Q Consensus 284 El~KKLaKLEaEcqrLr~l 302 (1091)
....+|..|++.++.+-.-
T Consensus 432 s~d~~I~dLqEQlrDlmf~ 450 (493)
T KOG0804|consen 432 SKDEKITDLQEQLRDLMFF 450 (493)
T ss_pred HHHHHHHHHHHHHHhHhee
Confidence 3444555666665555443
No 239
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=84.04 E-value=85 Score=35.87 Aligned_cols=69 Identities=13% Similarity=0.104 Sum_probs=31.4
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001374 235 LLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLV 303 (1091)
Q Consensus 235 LLkERIenlEKEne~LK~EL~~LqeELEiL~EElE~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l~ 303 (1091)
.|..+|+....+.++.+.+|..++.=.=...+|.+.++..+..+-..+.+.-..+.=||.++......-
T Consensus 194 ~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~kfRNl~yLe~qle~~~~~e 262 (267)
T PF10234_consen 194 NLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYVEKFRNLDYLEHQLEEYNRRE 262 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 333334433344444444444444422233344555544444445555555555555555555544443
No 240
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=84.01 E-value=22 Score=35.86 Aligned_cols=96 Identities=21% Similarity=0.288 Sum_probs=65.4
Q ss_pred HHHHHHHHhHHHHhhhhhhHHHHHhhhhHHHHHHHHHHHhhhHHHH--HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 001374 121 AEALALKNHLESVTLSKLTAEDRAAHLDGALKECMRQIRNLKEEHE--QKLQDFVLTKTKQWDKIRLEFEAKIANFEQEL 198 (1091)
Q Consensus 121 ~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLKec~~qLr~~reeqe--qki~~~~~~~~~e~e~~~~ELEaKLaElEkeL 198 (1091)
++.--|..+|..+..++..++-.+...+.||.||- .+-++-. ..+.+++.+. ..+++..+|+.+++.++.++
T Consensus 13 ~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele----~l~eD~~vYk~VG~llvk~--~k~~~~~eL~er~E~Le~ri 86 (119)
T COG1382 13 AQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELE----KLDEDAPVYKKVGNLLVKV--SKEEAVDELEERKETLELRI 86 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCcccHHHHHhhhHHhhh--hHHHHHHHHHHHHHHHHHHH
Confidence 45566778888888888888888888888888875 2222221 3445555444 44677888888888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 199 LRSAAENATLSRSLQERSNMLIKI 222 (1091)
Q Consensus 199 eelkaEl~aLeeqLEelqeeI~EL 222 (1091)
..+..+-..+...+++++..|...
T Consensus 87 ~tLekQe~~l~e~l~eLq~~i~~~ 110 (119)
T COG1382 87 KTLEKQEEKLQERLEELQSEIQKA 110 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777776666666665543
No 241
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.92 E-value=17 Score=33.42 Aligned_cols=56 Identities=16% Similarity=0.089 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 211 SLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNE 266 (1091)
Q Consensus 211 qLEelqeeI~EL~eeiErlEgEi~LLkERIenlEKEne~LK~EL~~LqeELEiL~E 266 (1091)
.+.-++-+|.+++++...+..+...++..++.+++++..|+.+-...++.+..+-.
T Consensus 19 TI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLG 74 (79)
T COG3074 19 TITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLG 74 (79)
T ss_pred HHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444455555555555555555666667777777777777777666555443
No 242
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=83.55 E-value=2.9 Score=49.16 Aligned_cols=93 Identities=22% Similarity=0.357 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001374 833 EMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESY----RSLETHAQELEAEVNLLRAKIESLENELQDEKMS 908 (1091)
Q Consensus 833 Eel~~qLqelE~~LeELesQLesLqeS~selEeqLk~~~e~l----edLesrL~eLeaElkeLqeKVesLE~ELe~ek~~ 908 (1091)
+....++.++...+.+|+.++..++........++..+.... ..+.+++.+++.++..+...+..++..+..+...
T Consensus 94 ek~~k~l~el~~~~~elkkEie~IKk~q~e~~~~i~~~~~~~~~~~~~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~ 173 (370)
T PF02994_consen 94 EKSIKELNELKKRIKELKKEIENIKKNQSEMKLEIENLKKKLENIDESLNSRIDELEERISELEDRIEEIEQAIKELEKR 173 (370)
T ss_dssp ------------------------H-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHH
Confidence 333444445555666666666666654444444554444333 2344455555555555555555555555555555
Q ss_pred hHHHHHHHHHHHHHHHh
Q 001374 909 HHNAMAKCKELEEQLQR 925 (1091)
Q Consensus 909 ~eEleaK~~eLEeQLe~ 925 (1091)
+..+..+|.+|+..+.+
T Consensus 174 i~~l~~kl~DlEnrsRR 190 (370)
T PF02994_consen 174 IKKLEDKLDDLENRSRR 190 (370)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhccC
Confidence 55555555555555543
No 243
>PF13166 AAA_13: AAA domain
Probab=83.53 E-value=1.4e+02 Score=37.89 Aligned_cols=11 Identities=36% Similarity=0.338 Sum_probs=7.6
Q ss_pred CCCCCcCcchh
Q 001374 451 NDDKVSCADSW 461 (1091)
Q Consensus 451 ~dd~~s~s~sw 461 (1091)
-||.+|+-|+=
T Consensus 533 iDDPISSLD~~ 543 (712)
T PF13166_consen 533 IDDPISSLDHN 543 (712)
T ss_pred ECCCCCCCCHH
Confidence 47777777663
No 244
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=83.52 E-value=31 Score=37.13 Aligned_cols=65 Identities=18% Similarity=0.171 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCChHH
Q 001374 245 REINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLVRKKLPGPAA 312 (1091)
Q Consensus 245 KEne~LK~EL~~LqeELEiL~EElE~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l~rk~lpgpaa 312 (1091)
.+...|+.++..++.+++.. ....-..++.+..........+..-...+--+..-++++.+++..
T Consensus 110 ~~l~~l~~~~~~l~~el~~~---~~~Dp~~i~~~~~~~~~~~~~anrwTDNI~~l~~~~~~k~~~~~~ 174 (188)
T PF03962_consen 110 EELEELKKELKELKKELEKY---SENDPEKIEKLKEEIKIAKEAANRWTDNIFSLKSYLKKKFGMDEE 174 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HhcCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCCCHH
Confidence 34444444444444443311 112234556666677777777788888888888888998887654
No 245
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=83.23 E-value=1e+02 Score=36.13 Aligned_cols=35 Identities=23% Similarity=0.348 Sum_probs=18.9
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHh
Q 001374 378 MLKEALAKRNSELQASRNLCAKTASKLQSLEAQMQ 412 (1091)
Q Consensus 378 ~lke~l~~k~~elq~sr~~~a~t~~kl~~~e~q~~ 412 (1091)
.|=|.++-||--||-.|..===-+.|+..||..+.
T Consensus 283 aLle~indK~~al~Hqr~tNkILg~rv~ELE~kl~ 317 (319)
T PF09789_consen 283 ALLETINDKNLALQHQRKTNKILGNRVAELEKKLK 317 (319)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455566666666555544444455555555554
No 246
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=83.13 E-value=59 Score=37.99 Aligned_cols=62 Identities=21% Similarity=0.276 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 001374 199 LRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKE 260 (1091)
Q Consensus 199 eelkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIenlEKEne~LK~EL~~LqeE 260 (1091)
++-+.+...|.-+-+.+.+++....+-+.+..++...+++=+.++..++..|+.++..+..+
T Consensus 95 ~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e 156 (401)
T PF06785_consen 95 EERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQE 156 (401)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 33344455555555555555555555555555555555555555555555555555554444
No 247
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=83.02 E-value=51 Score=41.85 Aligned_cols=37 Identities=14% Similarity=0.176 Sum_probs=20.5
Q ss_pred HhHHHHhhhhhhHHHHHhhhhHHHHHHHHHHHhhhHH
Q 001374 128 NHLESVTLSKLTAEDRAAHLDGALKECMRQIRNLKEE 164 (1091)
Q Consensus 128 ~~Le~~~~q~~~le~rv~hLd~aLKec~~qLr~~ree 164 (1091)
+-+-.++-.....-+++..|+.+|-.....+|+.+|-
T Consensus 77 ~rflnaqre~t~~~d~ndklE~~Lankda~lrq~eek 113 (916)
T KOG0249|consen 77 KRFLNAQRESTSIHDLNDKLENELANKDADLRQNEEK 113 (916)
T ss_pred HHHHhccCCCCCcccchHHHHHHHhCcchhhchhHHh
Confidence 3344444445555566666666666665555555543
No 248
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=82.99 E-value=55 Score=37.24 Aligned_cols=18 Identities=11% Similarity=0.281 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHhhhHHHH
Q 001374 149 GALKECMRQIRNLKEEHE 166 (1091)
Q Consensus 149 ~aLKec~~qLr~~reeqe 166 (1091)
..|-.+|++||.+|+=--
T Consensus 53 ~~i~~k~~e~r~~r~lat 70 (338)
T KOG3647|consen 53 SLIGDKIEELRKARELAT 70 (338)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 347788889988887544
No 249
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=82.73 E-value=13 Score=33.90 Aligned_cols=65 Identities=26% Similarity=0.310 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 842 TEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVNLLRAKIESLENELQDEK 906 (1091)
Q Consensus 842 lE~~LeELesQLesLqeS~selEeqLk~~~e~ledLesrL~eLeaElkeLqeKVesLE~ELe~ek 906 (1091)
++..+..|+..+..+...++..+...+.+.........++..+-.++..|..+++.|.+|++..+
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44555566666666666666666667777766777777777777777777777777777766543
No 250
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.54 E-value=1.4e+02 Score=37.22 Aligned_cols=172 Identities=23% Similarity=0.255 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcchhhHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhHHHHhhhhhhHHHHHhhhhHHHH
Q 001374 73 QVQTMEEQIKELNEKLSAANSEISAKEDLVKQHTKVAEEAVSGWEKAEAEALALKNHLESVTLSKLTAEDRAAHLDGALK 152 (1091)
Q Consensus 73 ~~~~~~~~~k~l~ekls~a~~~~~~kd~lvkqh~kvaeeav~gwekae~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLK 152 (1091)
.++.|.-.|..|+++|..+-.++ ++-|-.|.+=-| |-..||+++++....--.+.--+..+-.||-
T Consensus 9 ~ve~lr~eierLT~el~q~t~e~-------------~qaAeyGL~lLe-eK~~Lkqq~eEleaeyd~~R~Eldqtkeal~ 74 (772)
T KOG0999|consen 9 EVEKLRQEIERLTEELEQTTEEK-------------IQAAEYGLELLE-EKEDLKQQLEELEAEYDLARTELDQTKEALG 74 (772)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678889999999998876665 233445554433 4456777777777666666666666666665
Q ss_pred HHHHHHHhh-h--HHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 153 ECMRQIRNL-K--EEHE-QKLQDFVLTKTKQWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQ 228 (1091)
Q Consensus 153 ec~~qLr~~-r--eeqe-qki~~~~~~~~~e~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLEelqeeI~EL~eeiEr 228 (1091)
+.--+-+.+ + +++| --+++. +.+-..+-..-.++++.+-.+...|...+.++..+....+.....-.....+.-+
T Consensus 75 q~~s~hkk~~~~g~e~EesLLqES-aakE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~r 153 (772)
T KOG0999|consen 75 QYRSQHKKVARDGEEREESLLQES-AAKEEYYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRR 153 (772)
T ss_pred HHHHHHHHhhccchhhHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHH
Confidence 544333222 2 2222 334444 3333334444466677777777777777777766666555555444445555556
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 001374 229 AEAEIELLKGNIEQCEREINSAKYELHIVSK 259 (1091)
Q Consensus 229 lEgEi~LLkERIenlEKEne~LK~EL~~Lqe 259 (1091)
+..++.-.+.|-..+-.+...|..+--.+++
T Consensus 154 lr~elKe~KfRE~RllseYSELEEENIsLQK 184 (772)
T KOG0999|consen 154 LRDELKEYKFREARLLSEYSELEEENISLQK 184 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 6666666666655555555555444433333
No 251
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=82.35 E-value=1.2e+02 Score=36.32 Aligned_cols=161 Identities=14% Similarity=0.146 Sum_probs=82.9
Q ss_pred HHHHHHHHHHhHHHHhhhhhhHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 001374 119 AEAEALALKNHLESVTLSKLTAEDRAAHLDGALKECMRQIRNLKEEHEQKLQDFVLTKTKQWDKIRLEFEAKIANFEQEL 198 (1091)
Q Consensus 119 ae~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLKec~~qLr~~reeqeqki~~~~~~~~~e~e~~~~ELEaKLaElEkeL 198 (1091)
++.|....++.+-.+++...-+....-.|-.-||....|-+++-++-. .+....+++.-.-..+..+..++..+-
T Consensus 121 v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~q-----sl~a~~k~LQ~s~~Qlk~~~~~L~~r~ 195 (499)
T COG4372 121 VRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQ-----SLQASQKQLQASATQLKSQVLDLKLRS 195 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777777777776666666666666667776666666544322 133344444433344444444443322
Q ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001374 199 LRSA---AENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSA 275 (1091)
Q Consensus 199 eelk---aEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIenlEKEne~LK~EL~~LqeELEiL~EElE~s~qsa 275 (1091)
..+. ..+..-...++.+.+++........+....+.-....|.+....+..-.+.|...+..+..++.+..++++..
T Consensus 196 ~~ieQ~~~~la~r~~a~q~r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leqev 275 (499)
T COG4372 196 AQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEV 275 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2221 2222222333444444444444444455555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHH
Q 001374 276 EAANKQHME 284 (1091)
Q Consensus 276 eal~KQ~lE 284 (1091)
+.+++-+..
T Consensus 276 a~le~yyQ~ 284 (499)
T COG4372 276 AQLEAYYQA 284 (499)
T ss_pred HHHHHHHHH
Confidence 444444333
No 252
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=82.26 E-value=44 Score=33.80 Aligned_cols=29 Identities=17% Similarity=0.214 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 193 NFEQELLRSAAENATLSRSLQERSNMLIK 221 (1091)
Q Consensus 193 ElEkeLeelkaEl~aLeeqLEelqeeI~E 221 (1091)
.+...+..++.++..+...+..+...+.+
T Consensus 10 ~l~~~~~~l~~~~~~l~~~~~~l~~~~~e 38 (140)
T PRK03947 10 ELAAQLQALQAQIEALQQQLEELQASINE 38 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444443333333333
No 253
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=82.18 E-value=89 Score=34.77 Aligned_cols=132 Identities=21% Similarity=0.236 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHH------------
Q 001374 818 KDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELE------------ 885 (1091)
Q Consensus 818 keelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selEeqLk~~~e~ledLesrL~eLe------------ 885 (1091)
..++..-++.+.+-...+...|++++..+.++...+..+-.....++.+++.+......++.+....-
T Consensus 12 ~a~~~~~~dk~EDp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al 91 (225)
T COG1842 12 KANINELLDKAEDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREAL 91 (225)
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhcccchhHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 001374 886 AEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNENCAVCSSEADENKIKQDRDLAAAAERLAECQETILLL 964 (1091)
Q Consensus 886 aElkeLqeKVesLE~ELe~ek~~~eEleaK~~eLEeQLe~~~~~~lk~q~dkdLKikqEkEIaaAeeKLAEcQeTI~sL 964 (1091)
.+...+.+.+..++..+.........+...+..|+.+|. ..+..+..-.|...-++-+..+...
T Consensus 92 ~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~---------------e~~~~~~~l~ar~~~akA~~~v~~~ 155 (225)
T COG1842 92 EEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIA---------------ELRAKKEALKARKAAAKAQEKVNRS 155 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHH
No 254
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=81.98 E-value=2.1e+02 Score=38.88 Aligned_cols=16 Identities=13% Similarity=0.279 Sum_probs=9.4
Q ss_pred cchhhHhhhhhhhhhh
Q 001374 458 ADSWATALISELSQIK 473 (1091)
Q Consensus 458 s~swasalisel~~fk 473 (1091)
.-+|...+..++..+-
T Consensus 441 ~l~w~~~~~~~l~~l~ 456 (1109)
T PRK10929 441 SLSYPLEIAQDLRRLL 456 (1109)
T ss_pred ChHHHHHHHHHHHHHh
Confidence 3467666666665544
No 255
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=81.74 E-value=21 Score=32.92 Aligned_cols=63 Identities=24% Similarity=0.342 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 001374 190 KIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKY 252 (1091)
Q Consensus 190 KLaElEkeLeelkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIenlEKEne~LK~ 252 (1091)
.|.+-..+++.+..+-..|...-....+.|-.|.......+..+..+..+++..+.++..|+.
T Consensus 6 ~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~ 68 (74)
T PF12329_consen 6 KLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEE 68 (74)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444444444444444444444444444444444433
No 256
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=81.67 E-value=93 Score=34.63 Aligned_cols=27 Identities=19% Similarity=0.110 Sum_probs=10.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 239 NIEQCEREINSAKYELHIVSKELEIRN 265 (1091)
Q Consensus 239 RIenlEKEne~LK~EL~~LqeELEiL~ 265 (1091)
.+++++..+..++..+..+++++..++
T Consensus 64 e~e~L~~~~~~l~~~v~~q~~el~~L~ 90 (251)
T PF11932_consen 64 EIENLEVYNEQLERQVASQEQELASLE 90 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 257
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=81.62 E-value=59 Score=33.40 Aligned_cols=33 Identities=21% Similarity=0.214 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhh
Q 001374 896 ESLENELQDEKMSHHNAMAKCKELEEQLQRNEN 928 (1091)
Q Consensus 896 esLE~ELe~ek~~~eEleaK~~eLEeQLe~~~~ 928 (1091)
...+.|++.+=..+.++..|+..+..+|...|.
T Consensus 80 ~~~q~EldDLL~ll~Dle~K~~kyk~rLk~LG~ 112 (136)
T PF04871_consen 80 KEAQSELDDLLVLLGDLEEKRKKYKERLKELGE 112 (136)
T ss_pred HhhhhhHHHHHHHHHhHHHHHHHHHHHHHHcCC
Confidence 567889999999999999999999999998886
No 258
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=81.50 E-value=1.1e+02 Score=35.46 Aligned_cols=91 Identities=23% Similarity=0.181 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 001374 213 QERSNMLIKISEEKSQAEAEIELLKG-------NIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEG 285 (1091)
Q Consensus 213 EelqeeI~EL~eeiErlEgEi~LLkE-------RIenlEKEne~LK~EL~~LqeELEiL~EElE~s~qsaeal~KQ~lEl 285 (1091)
+-....+................+.+ ++..+...-..|+.+|..-....+....-+..+..-+..-.+++...
T Consensus 170 Ql~~AKl~q~~~~~~~e~~k~~~~~~~~l~~~~~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm 249 (309)
T PF09728_consen 170 QLAEAKLEQQQEEAEQEKEKAKQEKEILLEEAAQVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKM 249 (309)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 33333333333334444444444444 55555555555566666666555666666666666666667777777
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 001374 286 VKKIAKLEAECQRLRGLV 303 (1091)
Q Consensus 286 ~KKLaKLEaEcqrLr~l~ 303 (1091)
.+++.+||.+...|+.-.
T Consensus 250 ~Kk~kklEKE~~~~k~k~ 267 (309)
T PF09728_consen 250 SKKIKKLEKENQTWKSKW 267 (309)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777777777776665543
No 259
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=81.47 E-value=18 Score=32.46 Aligned_cols=47 Identities=21% Similarity=0.311 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 860 NSLAETQLKCMAESYRSLETHAQELEAEVNLLRAKIESLENELQDEK 906 (1091)
Q Consensus 860 ~selEeqLk~~~e~ledLesrL~eLeaElkeLqeKVesLE~ELe~ek 906 (1091)
+..+.+++......+-..+.+|.+.+.+...|..+|..|+.+++..+
T Consensus 13 kQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 13 KQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455566666666666677777777777777777777777777654
No 260
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=81.35 E-value=1.1e+02 Score=35.36 Aligned_cols=46 Identities=17% Similarity=0.342 Sum_probs=29.2
Q ss_pred HHHHHHHHhHHHHhhhhhhHHHHHhhhhHHHHHHHHHHHhhhHHHH
Q 001374 121 AEALALKNHLESVTLSKLTAEDRAAHLDGALKECMRQIRNLKEEHE 166 (1091)
Q Consensus 121 ~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLKec~~qLr~~reeqe 166 (1091)
..+-+++.+.+....++..+.++-..+-.-|-+-++..+.+++...
T Consensus 55 e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~ 100 (294)
T COG1340 55 EKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRN 100 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455666666666666666666666666666666666666665544
No 261
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=81.12 E-value=79 Score=33.47 Aligned_cols=60 Identities=15% Similarity=0.139 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001374 242 QCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRG 301 (1091)
Q Consensus 242 nlEKEne~LK~EL~~LqeELEiL~EElE~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~ 301 (1091)
+.+.++...-.+.+.++-+|....++...++...+.+...+..+..-|.+.+.-...+..
T Consensus 74 ysE~dik~AYe~A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi~v 133 (159)
T PF05384_consen 74 YSEEDIKEAYEEAHELQVRLAMLREREKQLRERRDELERRLRNLEETIERAENLVSQIGV 133 (159)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666667777777777777777777677777766666666666665554443
No 262
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=81.01 E-value=1.4e+02 Score=36.11 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=15.9
Q ss_pred hhhHHHH-HHHHHHHHHHhhhHHHHH
Q 001374 160 NLKEEHE-QKLQDFVLTKTKQWDKIR 184 (1091)
Q Consensus 160 ~~reeqe-qki~~~~~~~~~e~e~~~ 184 (1091)
++|-||| .-|.-++.++-+-|-+-+
T Consensus 91 QaraeqeeEfisntLlkkiqal~kek 116 (552)
T KOG2129|consen 91 QARAEQEEEFISNTLLKKIQALFKEK 116 (552)
T ss_pred hhccchHHHHHHHHHHHHHHHhhccc
Confidence 4455544 566668888887776543
No 263
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=80.82 E-value=37 Score=33.22 Aligned_cols=33 Identities=12% Similarity=0.203 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 001374 884 LEAEVNLLRAKIESLENELQDEKMSHHNAMAKC 916 (1091)
Q Consensus 884 LeaElkeLqeKVesLE~ELe~ek~~~eEleaK~ 916 (1091)
++.++..+...+..|++.+.+++..+.+++..+
T Consensus 72 l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l 104 (110)
T TIGR02338 72 LKEKKETLELRVKTLQRQEERLREQLKELQEKI 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444433
No 264
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=80.35 E-value=41 Score=32.97 Aligned_cols=36 Identities=28% Similarity=0.349 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 001374 889 NLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQ 924 (1091)
Q Consensus 889 keLqeKVesLE~ELe~ek~~~eEleaK~~eLEeQLe 924 (1091)
..+..+++.++..+..+......+..++.+++.+|.
T Consensus 70 ~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~ 105 (110)
T TIGR02338 70 QELKEKKETLELRVKTLQRQEERLREQLKELQEKIQ 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444443
No 265
>PLN02939 transferase, transferring glycosyl groups
Probab=80.30 E-value=2.2e+02 Score=38.07 Aligned_cols=72 Identities=24% Similarity=0.241 Sum_probs=43.3
Q ss_pred hHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 001374 179 QWDKIRLEFEAKIAN-------FEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAK 251 (1091)
Q Consensus 179 e~e~~~~ELEaKLaE-------lEkeLeelkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIenlEKEne~LK 251 (1091)
+.+++|.++-..... +..++..++.++..+...++.+..++.+..+ ..+++--++++..-|.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~ 270 (977)
T PLN02939 202 QLEKLRNELLIRGATEGLCVHSLSKELDVLKEENMLLKDDIQFLKAELIEVAE-----------TEERVFKLEKERSLLD 270 (977)
T ss_pred HHHHHhhhhhccccccccccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh-----------hhHHHHHHHHHHHHHH
Confidence 456666665554444 5677788888888888888877776655422 2344445555555555
Q ss_pred HHHHHHHHHH
Q 001374 252 YELHIVSKEL 261 (1091)
Q Consensus 252 ~EL~~LqeEL 261 (1091)
.-+..++.++
T Consensus 271 ~~~~~~~~~~ 280 (977)
T PLN02939 271 ASLRELESKF 280 (977)
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 266
>PF07445 priB_priC: Primosomal replication protein priB and priC; InterPro: IPR010890 This family contains the bacterial primosomal replication proteins priB and priC (approximately 180 residues long). In Escherichia coli, these function in the assembly of the primosome [].
Probab=80.27 E-value=64 Score=34.36 Aligned_cols=33 Identities=18% Similarity=0.411 Sum_probs=28.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001374 940 KIKQDRDLAAAAERLAECQETILLLGKQLKSLR 972 (1091)
Q Consensus 940 KikqEkEIaaAeeKLAEcQeTI~sLEKQLKsLa 972 (1091)
+.....+|.++++.+..|+..|..+|++|..+.
T Consensus 140 ~~~lq~ei~a~e~RL~RCr~Ai~~iE~~I~~~E 172 (173)
T PF07445_consen 140 QQQLQQEILALEQRLQRCRQAIEKIEEQIQRRE 172 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445566999999999999999999999998654
No 267
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=80.18 E-value=1.1e+02 Score=34.62 Aligned_cols=33 Identities=18% Similarity=0.217 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 001374 892 RAKIESLENELQDEKMSHHNAMAKCKELEEQLQ 924 (1091)
Q Consensus 892 qeKVesLE~ELe~ek~~~eEleaK~~eLEeQLe 924 (1091)
-..++.|+.++...++.++.+...|.+|++.=.
T Consensus 90 y~q~s~Leddlsqt~aikeql~kyiReLEQaND 122 (333)
T KOG1853|consen 90 YQQESQLEDDLSQTHAIKEQLRKYIRELEQAND 122 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344566777777777777777777777765433
No 268
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=80.16 E-value=1.1e+02 Score=34.71 Aligned_cols=32 Identities=19% Similarity=0.377 Sum_probs=17.3
Q ss_pred hhHHH-HHHHHHHHHhHHHHhhhhhhHHHHHhh
Q 001374 115 GWEKA-EAEALALKNHLESVTLSKLTAEDRAAH 146 (1091)
Q Consensus 115 gweka-e~e~~~lK~~Le~~~~q~~~le~rv~h 146 (1091)
-|+.. +..+..|.+|++.+..+...+.+-|.-
T Consensus 74 e~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~ 106 (258)
T PF15397_consen 74 EWEEKEESKLSKLQQQLEQLDAKIQKTQEELNF 106 (258)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45433 456666666666655555555444443
No 269
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=80.04 E-value=1.2e+02 Score=35.03 Aligned_cols=17 Identities=18% Similarity=0.235 Sum_probs=7.6
Q ss_pred HHHHHHHHhHHHHhhhh
Q 001374 121 AEALALKNHLESVTLSK 137 (1091)
Q Consensus 121 ~e~~~lK~~Le~~~~q~ 137 (1091)
.+|..+|...+..-...
T Consensus 69 eev~elK~kR~ein~kl 85 (294)
T COG1340 69 EEVQELKEKRDEINAKL 85 (294)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444333
No 270
>PF15456 Uds1: Up-regulated During Septation
Probab=79.69 E-value=37 Score=34.41 Aligned_cols=43 Identities=30% Similarity=0.410 Sum_probs=33.4
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 806 FSLEEFEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEV 849 (1091)
Q Consensus 806 ~s~EelEqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeEL 849 (1091)
.+.|||+.++.++..+..++.-++.++. +...++++-..+..+
T Consensus 19 Ls~eEVe~LKkEl~~L~~R~~~lr~kl~-le~k~RdAa~sl~~l 61 (124)
T PF15456_consen 19 LSFEEVEELKKELRSLDSRLEYLRRKLA-LESKIRDAAHSLSRL 61 (124)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 6789999999999999999988887777 666666655444444
No 271
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=79.48 E-value=44 Score=41.11 Aligned_cols=100 Identities=14% Similarity=0.214 Sum_probs=72.0
Q ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHH
Q 001374 804 CKFSLEEFEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQE 883 (1091)
Q Consensus 804 ~~~s~EelEqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selEeqLk~~~e~ledLesrL~e 883 (1091)
+.+-...+++|-.++..+..+......+++.+..+|..++.....+..+|..+...+..+++++......| +.|+..
T Consensus 415 k~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NY---E~QLs~ 491 (518)
T PF10212_consen 415 KSYYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNY---EEQLSM 491 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHH
Confidence 34455678888888888888888888888888888888888888888888888888887777777554433 446666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001374 884 LEAEVNLLRAKIESLENELQDEK 906 (1091)
Q Consensus 884 LeaElkeLqeKVesLE~ELe~ek 906 (1091)
+--.+..+..++..-..+|+.++
T Consensus 492 MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 492 MSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 66666666666666666666554
No 272
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=79.34 E-value=27 Score=38.60 Aligned_cols=65 Identities=14% Similarity=0.241 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhh
Q 001374 863 AETQLKCMAESYRSLETHAQELEAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNE 927 (1091)
Q Consensus 863 lEeqLk~~~e~ledLesrL~eLeaElkeLqeKVesLE~ELe~ek~~~eEleaK~~eLEeQLe~~~ 927 (1091)
++++..+..+...-+++++.....+++..++++..|++..+.+...-..+..+...|+++++.-+
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~~~ 213 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIESGG 213 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhccC
Confidence 55666667777777777777888888888888888888888888888888888888888888544
No 273
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=79.28 E-value=1.3e+02 Score=38.62 Aligned_cols=20 Identities=30% Similarity=0.384 Sum_probs=14.5
Q ss_pred CCCCCccccccccccccCCC
Q 001374 1069 APTPEKSSRGFSRFFSSKGR 1088 (1091)
Q Consensus 1069 ~~~~~~~~~~~~~~f~~~~~ 1088 (1091)
.-.|+-++.|.+|.+.+.-.
T Consensus 893 k~~~d~~ss~~q~~~~~s~R 912 (916)
T KOG0249|consen 893 KMQPDAVSSGLQRLDESSVR 912 (916)
T ss_pred cCCcccccccchhhhccccc
Confidence 45688888888888766443
No 274
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=79.10 E-value=28 Score=36.33 Aligned_cols=6 Identities=0% Similarity=0.158 Sum_probs=2.5
Q ss_pred hhHHHH
Q 001374 692 GFSQKI 697 (1091)
Q Consensus 692 ~l~~~l 697 (1091)
.+.+.|
T Consensus 21 di~~nL 26 (169)
T PF07106_consen 21 DIFDNL 26 (169)
T ss_pred HHHHHH
Confidence 344444
No 275
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=78.98 E-value=43 Score=42.89 Aligned_cols=33 Identities=18% Similarity=0.168 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 819 DNLATDLARCTENLEMTKSQLYETEQLLAEVKA 851 (1091)
Q Consensus 819 eelE~eLee~~eklEel~~qLqelE~~LeELes 851 (1091)
......++-+.+++..++.++..++..+...+.
T Consensus 263 ~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~ 295 (726)
T PRK09841 263 AQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQ 295 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444443
No 276
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=78.79 E-value=41 Score=39.18 Aligned_cols=24 Identities=21% Similarity=0.059 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 946 DLAAAAERLAECQETILLLGKQLK 969 (1091)
Q Consensus 946 EIaaAeeKLAEcQeTI~sLEKQLK 969 (1091)
-+..+-.++.+.+.+...-...+.
T Consensus 293 ~y~~~l~r~~~a~~~~~~~~~~~~ 316 (362)
T TIGR01010 293 QLKAALTSLQQTRVEADRQQLYLE 316 (362)
T ss_pred HHHHHHHHHHHHHHHHHhhheeee
Confidence 344455555555555544444443
No 277
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=78.20 E-value=48 Score=31.36 Aligned_cols=37 Identities=30% Similarity=0.383 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 001374 888 VNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQ 924 (1091)
Q Consensus 888 lkeLqeKVesLE~ELe~ek~~~eEleaK~~eLEeQLe 924 (1091)
...+..++..++.++..++.....+..++.+++..|.
T Consensus 64 ~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~ 100 (106)
T PF01920_consen 64 IEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLY 100 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555555556655554
No 278
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=78.16 E-value=1.2e+02 Score=36.62 Aligned_cols=91 Identities=20% Similarity=0.240 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHH------------------------HHHH
Q 001374 834 MTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELE------------------------AEVN 889 (1091)
Q Consensus 834 el~~qLqelE~~LeELesQLesLqeS~selEeqLk~~~e~ledLesrL~eLe------------------------aElk 889 (1091)
....++.+.+.-..+|+.++.+.-+++..++..|..++..+.+.+.-|.... .||+
T Consensus 275 af~~ri~etqdar~kL~~ql~k~leEi~~~e~~I~~le~airdK~~pLKVAqTRle~Rt~RPnvELCrD~AQ~~L~~EV~ 354 (421)
T KOG2685|consen 275 AFKKRIRETQDARNKLEWQLAKTLEEIADAENNIEALERAIRDKEGPLKVAQTRLENRTYRPNVELCRDQAQYRLVDEVH 354 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccccHHHHHHHHHHcccCCchHHHHhHHHHHHHHHHH
Confidence 3445555666666666666666666666666666666555554443333322 4555
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 001374 890 LLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQ 924 (1091)
Q Consensus 890 eLqeKVesLE~ELe~ek~~~eEleaK~~eLEeQLe 924 (1091)
++..-+.+|+..|..-+.....+..--..|+..|.
T Consensus 355 ~l~~t~~~L~~kL~eA~~~l~~L~~~~~rLe~di~ 389 (421)
T KOG2685|consen 355 ELDDTVAALKEKLDEAEDSLKLLVNHRARLERDIA 389 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555544444444444444
No 279
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=77.89 E-value=44 Score=38.67 Aligned_cols=139 Identities=14% Similarity=0.068 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 823 TDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVNLLRAKIESLENEL 902 (1091)
Q Consensus 823 ~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selEeqLk~~~e~ledLesrL~eLeaElkeLqeKVesLE~EL 902 (1091)
..|.++.+++.........+.+.-..|.-|+..|+..+.+++ ..+..+.-++.+....++.++..+
T Consensus 84 ~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~e--------------E~~~~~~re~~eK~~elEr~K~~~ 149 (302)
T PF09738_consen 84 DSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELE--------------ETLAQLQREYREKIRELERQKRAH 149 (302)
T ss_pred HHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444445555555544333333 333334444444444444445555
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHhhhh--hh--cc-------------------cchhHhh----hhhhHHHHHHHHHHHH
Q 001374 903 QDEKMSHHNAMAKCKELEEQLQRNEN--CA--VC-------------------SSEADEN----KIKQDRDLAAAAERLA 955 (1091)
Q Consensus 903 e~ek~~~eEleaK~~eLEeQLe~~~~--~~--lk-------------------~q~dkdL----KikqEkEIaaAeeKLA 955 (1091)
..++.....+...+.+..+-|...|- .. .. ......+ ...++-.|..+...-.
T Consensus 150 d~L~~e~~~Lre~L~~rdeli~khGlVlv~~~~ngd~~~~~~~~~~~~~~~vs~e~a~~L~~aG~g~LDvRLkKl~~eke 229 (302)
T PF09738_consen 150 DSLREELDELREQLKQRDELIEKHGLVLVPDATNGDTSDEPNNVGHPKRALVSQEAAQLLESAGDGSLDVRLKKLADEKE 229 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCeeeCCCCCCCccccCccccCCCcccccchhhhhhhcccCCCCHHHHHHHHHHHHH
Confidence 55555555555556666666666552 00 00 0001111 2234445666677777
Q ss_pred HHHHHHHHHHHHHHhhcCCC
Q 001374 956 ECQETILLLGKQLKSLRPQS 975 (1091)
Q Consensus 956 EcQeTI~sLEKQLKsLa~q~ 975 (1091)
+.+.+|..|.-||...+...
T Consensus 230 ~L~~qv~klk~qLee~~~~~ 249 (302)
T PF09738_consen 230 ELLEQVRKLKLQLEERQSEG 249 (302)
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 88888899999997765543
No 280
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=77.84 E-value=3.7 Score=47.52 Aligned_cols=24 Identities=13% Similarity=0.201 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 946 DLAAAAERLAECQETILLLGKQLK 969 (1091)
Q Consensus 946 EIaaAeeKLAEcQeTI~sLEKQLK 969 (1091)
.+...+-.+...+..++.||...-
T Consensus 134 dVSt~aL~ItdLe~RV~~LEs~~s 157 (326)
T PF04582_consen 134 DVSTQALNITDLESRVKALESGSS 157 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred hhhhhcchHhhHHHHHHHHhcCCC
Confidence 334444445555666666666543
No 281
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=77.62 E-value=25 Score=37.84 Aligned_cols=78 Identities=17% Similarity=0.285 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCChHHHHHHHH
Q 001374 239 NIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLVRKKLPGPAALAQMKM 318 (1091)
Q Consensus 239 RIenlEKEne~LK~EL~~LqeELEiL~EElE~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l~rk~lpgpaa~a~mk~ 318 (1091)
++..+.+++..++..+..++.+++.....+... .....+-..+.++.+++..|..++..... -.|..+.+|+.
T Consensus 70 ~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~-~eR~~~l~~l~~l~~~~~~l~~el~~~~~------~Dp~~i~~~~~ 142 (188)
T PF03962_consen 70 KLEKLQKEIEELEKKIEELEEKIEEAKKGREES-EEREELLEELEELKKELKELKKELEKYSE------NDPEKIEKLKE 142 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh------cCHHHHHHHHH
Confidence 333334444444444444444444443333322 11233344444455555555555553222 27899999999
Q ss_pred HHhhh
Q 001374 319 EVESL 323 (1091)
Q Consensus 319 ev~~l 323 (1091)
++..+
T Consensus 143 ~~~~~ 147 (188)
T PF03962_consen 143 EIKIA 147 (188)
T ss_pred HHHHH
Confidence 88853
No 282
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=77.50 E-value=1.1e+02 Score=33.11 Aligned_cols=68 Identities=18% Similarity=0.191 Sum_probs=44.8
Q ss_pred HHHHHHHhhhhcchhhHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhHHHHhhhhhhHHHHHhhhhHHHHHH
Q 001374 84 LNEKLSAANSEISAKEDLVKQHTKVAEEAVSGWEKAEAEALALKNHLESVTLSKLTAEDRAAHLDGALKEC 154 (1091)
Q Consensus 84 l~ekls~a~~~~~~kd~lvkqh~kvaeeav~gwekae~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLKec 154 (1091)
+.-.+..++..+-.-..++.|+..=+++++.-+.++=+.+.+.+++|+- +...++..+..++.-.+.|
T Consensus 10 ~~a~~~~~ld~~EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~---~~~~~~~~~~~~~~~A~~A 77 (221)
T PF04012_consen 10 VKANINELLDKAEDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLER---KLDEAEEEAEKWEKQAELA 77 (221)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 3445666666666677899999999999998888887777777766653 3333444444444443333
No 283
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=77.50 E-value=0.74 Score=58.25 Aligned_cols=175 Identities=23% Similarity=0.253 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001374 198 LLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCE----REINSAKYELHIVSKELEIRNEEKNMSMR 273 (1091)
Q Consensus 198 LeelkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIenlE----KEne~LK~EL~~LqeELEiL~EElE~s~q 273 (1091)
+..+..+.+.+......+...+..+..+++.+..+...+..++...+ .....+..++..+..+++.+.+++.....
T Consensus 181 l~~~~~e~d~l~q~~~el~~~i~~L~~e~~~L~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ql~~L~~el~~~e~ 260 (713)
T PF05622_consen 181 LSRLVAERDELAQRCHELEKQISDLQEEKESLQSENEELQERLSQLEGSSEEPSQHLSVELADLRAQLRRLREELERLEE 260 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhcccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444555555555555555555555555555433 11222233344444555555555555544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHhhhcCCcCCccccCCCCCCCCCCCCCCcccchh
Q 001374 274 SAEAANKQHMEGVKKIAKLEAECQRLRGLVRKKLPGPAALAQMKMEVESLGRDYGDSRLKRSPVKPTSPHLSPVSEFSLD 353 (1091)
Q Consensus 274 saeal~KQ~lEl~KKLaKLEaEcqrLr~l~rk~lpgpaa~a~mk~ev~~l~~~~~~~r~rr~~~~~~~~~~~~~~~~~~~ 353 (1091)
..+.......+..+.+.+|..+...|...++. ...+|+||+-|-.... |..|. +..+.
T Consensus 261 ~~~d~~~~~e~le~ei~~L~q~~~eL~~~A~~-------a~~LrDElD~lR~~a~--r~~kl-------------E~~ve 318 (713)
T PF05622_consen 261 QRDDLKIELEELEKEIDELRQENEELQAEARE-------ARALRDELDELREKAD--RADKL-------------ENEVE 318 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhhHHHHHHHHH--HHHHH-------------HHHHH
Confidence 55556666666777788888888888887765 3568999997654211 11111 11122
Q ss_pred hhHhhhhhhHHHHHHHHhHHHHHHHHHHHHHhhhhhHHHHH
Q 001374 354 NVQKFQKENEFLTERLLAMEEETKMLKEALAKRNSELQASR 394 (1091)
Q Consensus 354 ~~~~~~~~~~~l~~rl~~~eee~k~lke~l~~k~~elq~sr 394 (1091)
+.-+--.+..||-.|+..+++.|..|-+-...=..+|+-++
T Consensus 319 ~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~ 359 (713)
T PF05622_consen 319 KYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKAR 359 (713)
T ss_dssp -----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 22222346788899999999999887666555555665443
No 284
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=77.05 E-value=43 Score=33.02 Aligned_cols=67 Identities=18% Similarity=0.238 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 196 QELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELE 262 (1091)
Q Consensus 196 keLeelkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIenlEKEne~LK~EL~~LqeELE 262 (1091)
.++.++++++..|...+-+-+.....|.+.+...+..+.-+.+.++.+.=.|..|..++..++.+++
T Consensus 5 ~eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 5 QEYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777777777776666666666666666666666666666666665544
No 285
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=76.98 E-value=93 Score=32.51 Aligned_cols=43 Identities=16% Similarity=0.287 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 816 LEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQK 858 (1091)
Q Consensus 816 sEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqe 858 (1091)
.++.++...++.++.+++.++.++..+...+.++..-++.++.
T Consensus 6 ~~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~ 48 (145)
T COG1730 6 QELEELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLEN 48 (145)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666766777777776666666666666666654
No 286
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=76.83 E-value=1.1e+02 Score=36.74 Aligned_cols=28 Identities=18% Similarity=0.255 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 179 QWDKIRLEFEAKIANFEQELLRSAAENA 206 (1091)
Q Consensus 179 e~e~~~~ELEaKLaElEkeLeelkaEl~ 206 (1091)
+|+.--..++.+++..+++...+.+++.
T Consensus 10 ~~dqr~~~~~~~laq~~k~~s~~~aq~~ 37 (459)
T KOG0288|consen 10 ENDQRLIDLNTELAQCEKAQSRLSAQLV 37 (459)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444443333333333
No 287
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=76.82 E-value=2.8e+02 Score=37.29 Aligned_cols=174 Identities=15% Similarity=0.205 Sum_probs=102.0
Q ss_pred hhhHHHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHhhhhhhhcCCCCCccCCCCccccccccccchhhcccCCCCCC
Q 001374 691 NGFSQKIEEFYVSFNKVIDSNTYLVDFVFALSNVLAKASELRINVMGYKDTEIEPNSPDCIDKVALPENKVIKKDTSGER 770 (1091)
Q Consensus 691 ~~l~~~l~~f~~~~~~~l~~~~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~e~e~~~~~~~dk~~~~e~k~~~~~~~~~~ 770 (1091)
.++..+|+.+..+.+.+-..-+.+++=|+. +.|..+-|.+-.|.+.+. .....+|...++++.....--.
T Consensus 728 ~~i~r~l~~~e~~~~~L~~~~n~ved~if~-----~f~~~igv~ir~Yee~~~---~~~~a~k~~ef~~q~~~l~~~l-- 797 (1141)
T KOG0018|consen 728 SEIKRKLQNREGEMKELEERMNKVEDRIFK-----GFCRRIGVRIREYEEREL---QQEFAKKRLEFENQKAKLENQL-- 797 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhhhhcCeeeehHHHHHH---HHHHHHHHHHHHHHHHHHhhhh--
Confidence 345566666666666655554444442221 456667777666665554 2223455555555441111111
Q ss_pred CCCCccCCCCCCCCCCCCCCccccccccchhhhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 771 YPNGCAHISNPTSDPEVPDDGSIVAAYESETTACKFSLEEFEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVK 850 (1091)
Q Consensus 771 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~EelEqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELe 850 (1091)
+| .-+ +-.-..|+.++..++.++.++..+...-+..+..+.++ ..++.
T Consensus 798 ---------------~f----------e~~----~d~~~~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~-~~~e~-- 845 (1141)
T KOG0018|consen 798 ---------------DF----------EKQ----KDTQRRVERWERSVEDLEKEIEGLKKDEEAAEKIIAEI-EELEK-- 845 (1141)
T ss_pred ---------------hh----------eec----ccHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhH-HHHHH--
Confidence 11 110 12234677888888877777777776666666666555 22222
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 001374 851 AQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVNLLRAKIESLENELQDEKMSHH 910 (1091)
Q Consensus 851 sQLesLqeS~selEeqLk~~~e~ledLesrL~eLeaElkeLqeKVesLE~ELe~ek~~~e 910 (1091)
+-+..-..++.++.........+-..++.+..++..+..+++.++.|.+.+-..|.
T Consensus 846 ----k~k~~~~~~~~e~~e~~k~~~~~~~~~tkl~~~i~~~es~ie~~~~er~~lL~~ck 901 (1141)
T KOG0018|consen 846 ----KNKSKFEKKEDEINEVKKILRRLVKELTKLDKEITSIESKIERKESERHNLLSKCK 901 (1141)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhh
Confidence 11333445677777778888888888888888888888888888888877665554
No 288
>PRK09343 prefoldin subunit beta; Provisional
Probab=76.39 E-value=66 Score=32.27 Aligned_cols=39 Identities=18% Similarity=0.159 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 814 LKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQ 852 (1091)
Q Consensus 814 LEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQ 852 (1091)
|..++.+.-..++.++.++..+..+++.++..+.+.+.-
T Consensus 5 ~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~ 43 (121)
T PRK09343 5 IPPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKA 43 (121)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444443333
No 289
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=76.35 E-value=2.4e+02 Score=36.36 Aligned_cols=59 Identities=22% Similarity=0.303 Sum_probs=26.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhh
Q 001374 869 CMAESYRSLETHAQELEAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNE 927 (1091)
Q Consensus 869 ~~~e~ledLesrL~eLeaElkeLqeKVesLE~ELe~ek~~~eEleaK~~eLEeQLe~~~ 927 (1091)
.....++.|..++...++.+++++..+..+..+++..+....-++..+..|.-++++++
T Consensus 563 e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k 621 (698)
T KOG0978|consen 563 EAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLK 621 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33333444444444444444444444444444444444444444444444444444443
No 290
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=76.10 E-value=2.2e+02 Score=35.78 Aligned_cols=37 Identities=24% Similarity=0.339 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHhHHHHhhhhhhHHHHHhhhhHHHH
Q 001374 116 WEKAEAEALALKNHLESVTLSKLTAEDRAAHLDGALK 152 (1091)
Q Consensus 116 wekae~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLK 152 (1091)
|=.-|--+.+.|+.++-....+.++-.++.++..-|+
T Consensus 336 ~~n~e~~~e~~~r~~e~~kd~~~~~~~~~~~~~~sl~ 372 (607)
T KOG0240|consen 336 WVNLELTAEEWKRKLEKKKDKNVALKEELEKLRNSLK 372 (607)
T ss_pred hhhhHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 3344445556666666666666666666666655554
No 291
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.05 E-value=34 Score=31.53 Aligned_cols=51 Identities=16% Similarity=0.173 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 001374 194 FEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCE 244 (1091)
Q Consensus 194 lEkeLeelkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIenlE 244 (1091)
++-++++++.+++.|....+..+.....+..+-+++..+....++|+..+-
T Consensus 23 LQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLL 73 (79)
T COG3074 23 LQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALL 73 (79)
T ss_pred HHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667778888888888888888888888888888888888888887664
No 292
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=75.92 E-value=31 Score=38.84 Aligned_cols=50 Identities=20% Similarity=0.272 Sum_probs=33.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 001374 871 AESYRSLETHAQELEAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELE 920 (1091)
Q Consensus 871 ~e~ledLesrL~eLeaElkeLqeKVesLE~ELe~ek~~~eEleaK~~eLE 920 (1091)
..+.+=...+..+|+.++..+...+..|+.|+..+++..-.|=.|++-|+
T Consensus 85 tsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylq 134 (248)
T PF08172_consen 85 TSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQ 134 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444445566667777777777777777777777777776666666654
No 293
>PRK10869 recombination and repair protein; Provisional
Probab=75.54 E-value=2.2e+02 Score=35.58 Aligned_cols=65 Identities=11% Similarity=0.091 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhhhhcchh-hHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhHHHHhhhhhhHHHHHhhhhH
Q 001374 81 IKELNEKLSAANSEISAK-EDLVKQHTKVAEEAVSGWEKAEAEALALKNHLESVTLSKLTAEDRAAHLDG 149 (1091)
Q Consensus 81 ~k~l~ekls~a~~~~~~k-d~lvkqh~kvaeeav~gwekae~e~~~lK~~Le~~~~q~~~le~rv~hLd~ 149 (1091)
..-|+..---.++|--+. ..+.+. -.++..-|.++..+...+...-....++.--|+-.+..|+.
T Consensus 134 ~~ll~~~~~~~lLD~~~~~~~~~~~----~~~~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~~ 199 (553)
T PRK10869 134 QLLLKPEHQKTLLDAYANETSLLQE----MRAAYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLKELNE 199 (553)
T ss_pred HHhcCHHHHHHHHHHhcccHHHHHH----HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555555444 333332 23556678888777777766655555555555555555543
No 294
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=75.31 E-value=2.1e+02 Score=35.27 Aligned_cols=24 Identities=17% Similarity=0.223 Sum_probs=12.1
Q ss_pred HHHhhhhhhHHHHHhhhhHHHHHH
Q 001374 131 ESVTLSKLTAEDRAAHLDGALKEC 154 (1091)
Q Consensus 131 e~~~~q~~~le~rv~hLd~aLKec 154 (1091)
.....+..++.+++.++.....+|
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~ 62 (475)
T PRK10361 39 EEMVAELSAAKQQITQSEHWRAEC 62 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555556666555444444
No 295
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=75.10 E-value=72 Score=30.91 Aligned_cols=29 Identities=17% Similarity=0.321 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001374 880 HAQELEAEVNLLRAKIESLENELQDEKMS 908 (1091)
Q Consensus 880 rL~eLeaElkeLqeKVesLE~ELe~ek~~ 908 (1091)
++..++.++..+..++..++.++...+..
T Consensus 71 ~~e~le~~i~~l~~~~~~l~~~~~elk~~ 99 (105)
T cd00632 71 RLETIELRIKRLERQEEDLQEKLKELQEK 99 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 296
>PF14992 TMCO5: TMCO5 family
Probab=75.05 E-value=58 Score=37.35 Aligned_cols=110 Identities=19% Similarity=0.186 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 001374 185 LEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEE----KSQAEAEIELLKGNIEQCEREINSAKYELHIVSKE 260 (1091)
Q Consensus 185 ~ELEaKLaElEkeLeelkaEl~aLeeqLEelqeeI~EL~ee----iErlEgEi~LLkERIenlEKEne~LK~EL~~LqeE 260 (1091)
.+.+..+.+++.+-+.+..++..+.+.+.+++..+.+.... ...+.+-+...+.+++.+......++.++..+...
T Consensus 59 ~~~e~~l~~le~e~~~LE~~ne~l~~~~~elq~k~~e~~~~~~~e~~~~~~~lq~sk~~lqql~~~~~~qE~ei~kve~d 138 (280)
T PF14992_consen 59 EERETDLQELELETAKLEKENEHLSKSVQELQRKQDEQETNVQCEDPQLSQSLQFSKNKLQQLLESCASQEKEIAKVEDD 138 (280)
T ss_pred hchHHHHHHHHhhhHHHhhhhHhhhhhhhhhhhhhccccCCCCCCccchhcccHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555666666666666666666665433222 23334444555555555555555555555555443
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001374 261 LEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGL 302 (1091)
Q Consensus 261 LEiL~EElE~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l 302 (1091)
.....+.-.....-+.+++++|.+.|. |.....|
T Consensus 139 -------~~~v~~l~eDq~~~i~klkE~L~rmE~-ekE~~lL 172 (280)
T PF14992_consen 139 -------YQQVHQLCEDQANEIKKLKEKLRRMEE-EKEMLLL 172 (280)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 222222223333444455556656655 4444433
No 297
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=74.73 E-value=59 Score=37.67 Aligned_cols=83 Identities=25% Similarity=0.311 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 001374 843 EQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQ 922 (1091)
Q Consensus 843 E~~LeELesQLesLqeS~selEeqLk~~~e~ledLesrL~eLeaElkeLqeKVesLE~ELe~ek~~~eEleaK~~eLEeQ 922 (1091)
...|.+++....++=-+++.+.++-..+.-+..-|...+.+++-.+.+++.++...-.+++..+..+..+..++..|+++
T Consensus 83 k~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~ 162 (302)
T PF09738_consen 83 KDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQ 162 (302)
T ss_pred HHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444344444444444444444455555555555555555555555555555555555555555555555
Q ss_pred HHh
Q 001374 923 LQR 925 (1091)
Q Consensus 923 Le~ 925 (1091)
|..
T Consensus 163 L~~ 165 (302)
T PF09738_consen 163 LKQ 165 (302)
T ss_pred HHH
Confidence 543
No 298
>PRK09343 prefoldin subunit beta; Provisional
Probab=74.60 E-value=98 Score=31.06 Aligned_cols=41 Identities=20% Similarity=0.232 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 810 EFEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVK 850 (1091)
Q Consensus 810 elEqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELe 850 (1091)
++.+.=.....++..+..+..+...+..++++++..+.||.
T Consensus 8 ~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~ 48 (121)
T PRK09343 8 EVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELE 48 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444455555555555555555555555555555544
No 299
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=74.37 E-value=1.1e+02 Score=37.05 Aligned_cols=11 Identities=36% Similarity=0.483 Sum_probs=5.7
Q ss_pred cCCccccCCCC
Q 001374 327 YGDSRLKRSPV 337 (1091)
Q Consensus 327 ~~~~r~rr~~~ 337 (1091)
.+.-|+.|.|.
T Consensus 286 IN~FRLG~lp~ 296 (447)
T KOG2751|consen 286 INNFRLGRLPS 296 (447)
T ss_pred cccceeccccC
Confidence 44555555544
No 300
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=74.32 E-value=2.7e+02 Score=36.05 Aligned_cols=153 Identities=24% Similarity=0.310 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc--------------------
Q 001374 246 EINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLVRK-------------------- 305 (1091)
Q Consensus 246 Ene~LK~EL~~LqeELEiL~EElE~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l~rk-------------------- 305 (1091)
++..|+.+|..++.+...+...+...+..++.......+...++..|.+.+..++.+=-.
T Consensus 266 EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~l~~~ke~~~~~d~~~~~~s~~d~~ 345 (717)
T PF09730_consen 266 EIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRKLQEDKEQQSAEDSEKERDSHEDGD 345 (717)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhcccccccccccc
Confidence 344555555555556666666666666666666666666777777777666655553110
Q ss_pred ----cCCChHH-----------HHHHHHHHhhhcCCcCCccccCCCCCCCCCCCCCCcccchhhhHhhhhhhHHHHHHHH
Q 001374 306 ----KLPGPAA-----------LAQMKMEVESLGRDYGDSRLKRSPVKPTSPHLSPVSEFSLDNVQKFQKENEFLTERLL 370 (1091)
Q Consensus 306 ----~lpgpaa-----------~a~mk~ev~~l~~~~~~~r~rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~rl~ 370 (1091)
-.|||-- +.+++.|+..|...+.... ....+....+..++.-|.++|.
T Consensus 346 ~ye~Di~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~-----------------~~~~~ek~~~~~e~q~L~ekl~ 408 (717)
T PF09730_consen 346 YYEVDINGLEILECKYKVAVSEVIQLKAELKALKSKYNELE-----------------ERYKQEKDRLESEVQNLKEKLM 408 (717)
T ss_pred hhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 1233321 1233444443322111110 0111111223344555667777
Q ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHhhhc
Q 001374 371 AMEEETKMLKEALAKRNSELQASRNLCAKTASKLQSLEAQMQTST 415 (1091)
Q Consensus 371 ~~eee~k~lke~l~~k~~elq~sr~~~a~t~~kl~~~e~q~~~~~ 415 (1091)
..+-..+.=++-+..=.+||+..+.+..++.+.|...+-.|...+
T Consensus 409 ~lek~~re~qeri~~LE~ELr~l~~~A~E~q~~LnsAQDELvtfS 453 (717)
T PF09730_consen 409 SLEKSSREDQERISELEKELRALSKLAGESQGSLNSAQDELVTFS 453 (717)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 666666666667777788888999999999999999988888553
No 301
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=74.24 E-value=1.4e+02 Score=32.48 Aligned_cols=28 Identities=21% Similarity=0.194 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001374 276 EAANKQHMEGVKKIAKLEAECQRLRGLV 303 (1091)
Q Consensus 276 eal~KQ~lEl~KKLaKLEaEcqrLr~l~ 303 (1091)
..+...+..+..+|...++.......+.
T Consensus 161 ~~a~~~~er~e~ki~~~ea~a~a~~el~ 188 (221)
T PF04012_consen 161 SSAMDSFERMEEKIEEMEARAEASAELA 188 (221)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444445555555555555554444443
No 302
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=74.11 E-value=32 Score=42.14 Aligned_cols=38 Identities=18% Similarity=0.251 Sum_probs=18.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 262 EIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRL 299 (1091)
Q Consensus 262 EiL~EElE~s~qsaeal~KQ~lEl~KKLaKLEaEcqrL 299 (1091)
....+++..+...+..+..++.++.++|.+++.++..+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l 171 (525)
T TIGR02231 134 DFNGSEIERLLTEDREAERRIRELEKQLSELQNELNAL 171 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333334444444445555555555555555554444
No 303
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=73.56 E-value=53 Score=31.01 Aligned_cols=24 Identities=29% Similarity=0.221 Sum_probs=10.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 239 NIEQCEREINSAKYELHIVSKELE 262 (1091)
Q Consensus 239 RIenlEKEne~LK~EL~~LqeELE 262 (1091)
....+..++..|+.+....+.++.
T Consensus 47 ~r~~L~~en~qLk~E~~~WqerLr 70 (79)
T PRK15422 47 QREELERENNHLKEQQNGWQERLQ 70 (79)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444433
No 304
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=73.53 E-value=90 Score=30.10 Aligned_cols=27 Identities=19% Similarity=0.094 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 001374 224 EEKSQAEAEIELLKGNIEQCEREINSA 250 (1091)
Q Consensus 224 eeiErlEgEi~LLkERIenlEKEne~L 250 (1091)
+.+.++..++.-..++.-.+.+....|
T Consensus 31 ~k~~rl~~Ek~kadqkyfa~mr~~d~l 57 (96)
T PF08647_consen 31 QKKLRLEAEKAKADQKYFAAMRSKDAL 57 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 333333333333333333333333333
No 305
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=73.36 E-value=1.3e+02 Score=38.55 Aligned_cols=106 Identities=15% Similarity=0.146 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhcccchhHhh---hhhhHHHHHHHH
Q 001374 875 RSLETHAQELEAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNENCAVCSSEADEN---KIKQDRDLAAAA 951 (1091)
Q Consensus 875 edLesrL~eLeaElkeLqeKVesLE~ELe~ek~~~eEleaK~~eLEeQLe~~~~~~lk~q~dkdL---KikqEkEIaaAe 951 (1091)
..+......+........+++..|..++..+++.+..+...|..+...+++.-...... ...+ ....-... +-.
T Consensus 223 ~~~~~~~~~l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~L~~~~~~l~~~~-~e~ 299 (670)
T KOG0239|consen 223 ADLRRNIKPLEGLESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTL--QSDLESLEENLVEKK-KEK 299 (670)
T ss_pred hhHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH-HHH
Confidence 33444444444444444555666666666666666666666666666665544300000 0000 00000011 222
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcccCCCCc
Q 001374 952 ERLAECQETILLLGKQLKSLRPQSEVIGSPYS 983 (1091)
Q Consensus 952 eKLAEcQeTI~sLEKQLKsLa~q~e~~~~~~~ 983 (1091)
..-..|..+|..|.-.|+-+++..-++.+..+
T Consensus 300 ~~r~kL~N~i~eLkGnIRV~CRvRP~~~~e~~ 331 (670)
T KOG0239|consen 300 EERRKLHNEILELKGNIRVFCRVRPLLPSEKQ 331 (670)
T ss_pred HHHHHHHHHHHHhhcCceEEEEecCCCccccc
Confidence 44556777888888888888887777776555
No 306
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=73.16 E-value=54 Score=30.75 Aligned_cols=79 Identities=14% Similarity=0.151 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 001374 841 ETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQEL-EAEVNLLRAKIESLENELQDEKMSHHNAMAKCKEL 919 (1091)
Q Consensus 841 elE~~LeELesQLesLqeS~selEeqLk~~~e~ledLesrL~eL-eaElkeLqeKVesLE~ELe~ek~~~eEleaK~~eL 919 (1091)
-+.+.|..+...+..+..+...+-.++......+..+....... -..+.....|+..++.++..+...+..+..|...|
T Consensus 11 ~l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~y~~KL~~ikkrm~~l~~~l~~lk~R~~~L 90 (92)
T PF14712_consen 11 LLEPDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDPYVKKLVNIKKRMSNLHERLQKLKKRADKL 90 (92)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455666666666666655555556665555554444422211 11122256666666666666666555555555544
No 307
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=73.02 E-value=83 Score=32.15 Aligned_cols=37 Identities=16% Similarity=0.316 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 001374 884 LEAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELE 920 (1091)
Q Consensus 884 LeaElkeLqeKVesLE~ELe~ek~~~eEleaK~~eLE 920 (1091)
.+.++..++..++.+..++...+.....++.|+..++
T Consensus 87 i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 87 IKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555555555555555555555544443
No 308
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=72.98 E-value=2.8e+02 Score=35.59 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=15.9
Q ss_pred HHhhhHHHHHHHHHHHHHHHhhhh
Q 001374 905 EKMSHHNAMAKCKELEEQLQRNEN 928 (1091)
Q Consensus 905 ek~~~eEleaK~~eLEeQLe~~~~ 928 (1091)
.+..+..+.+.|..|...+..+++
T Consensus 557 ~k~~~e~LqaE~~~lk~~l~~le~ 580 (716)
T KOG4593|consen 557 KKNRLEELQAELERLKERLTALEG 580 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455666677777777776666665
No 309
>PRK11519 tyrosine kinase; Provisional
Probab=72.97 E-value=56 Score=41.82 Aligned_cols=28 Identities=14% Similarity=0.224 Sum_probs=21.9
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 805 KFSLEEFEELKLEKDNLATDLARCTENL 832 (1091)
Q Consensus 805 ~~s~EelEqLEsEkeelE~eLee~~ekl 832 (1091)
.|..+++..++.++...+.+++.++.+-
T Consensus 270 ~fL~~ql~~l~~~L~~aE~~l~~fr~~~ 297 (719)
T PRK11519 270 AFLAQQLPEVRSRLDVAENKLNAFRQDK 297 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3677888888888888888888777543
No 310
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=72.37 E-value=69 Score=41.07 Aligned_cols=28 Identities=18% Similarity=0.256 Sum_probs=23.5
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 805 KFSLEEFEELKLEKDNLATDLARCTENL 832 (1091)
Q Consensus 805 ~~s~EelEqLEsEkeelE~eLee~~ekl 832 (1091)
.|..+++..++.++...+..++..+.+.
T Consensus 270 ~fL~~qL~~l~~~L~~aE~~l~~fr~~~ 297 (726)
T PRK09841 270 EFLQRQLPEVRSELDQAEEKLNVYRQQR 297 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4778889999999999999999888653
No 311
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=72.33 E-value=89 Score=30.11 Aligned_cols=42 Identities=19% Similarity=0.141 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 816 LEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQ 857 (1091)
Q Consensus 816 sEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLq 857 (1091)
.|+..++..+......+......+..+++.+.-|..++....
T Consensus 3 ~EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kad 44 (96)
T PF08647_consen 3 TELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKAD 44 (96)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444333
No 312
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=71.24 E-value=2.1e+02 Score=33.42 Aligned_cols=18 Identities=22% Similarity=0.337 Sum_probs=8.9
Q ss_pred HHHHhHHHHHHHHHHHHH
Q 001374 367 ERLLAMEEETKMLKEALA 384 (1091)
Q Consensus 367 ~rl~~~eee~k~lke~l~ 384 (1091)
.-...+-+||+.|++.|.
T Consensus 261 ~eek~ireEN~rLqr~L~ 278 (310)
T PF09755_consen 261 QEEKEIREENRRLQRKLQ 278 (310)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334445555555555544
No 313
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=70.50 E-value=2.7e+02 Score=34.27 Aligned_cols=51 Identities=20% Similarity=0.275 Sum_probs=36.8
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 175 TKTKQWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEE 225 (1091)
Q Consensus 175 ~~~~e~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLEelqeeI~EL~ee 225 (1091)
-.+.+.++.-..|..-++..++.|++.+.+...|.-++......+..|.+.
T Consensus 383 LEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEr 433 (527)
T PF15066_consen 383 LEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQER 433 (527)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHH
Confidence 345566777777777777788888888887777777777777776666554
No 314
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=70.40 E-value=3.8e+02 Score=36.06 Aligned_cols=108 Identities=16% Similarity=0.280 Sum_probs=59.0
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHH
Q 001374 806 FSLEEFEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELE 885 (1091)
Q Consensus 806 ~s~EelEqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selEeqLk~~~e~ledLesrL~eLe 885 (1091)
....++.+|...+..+..+|.++...-. .+. +.+.++.-+++.+.-+..++..+.-.+...+.++...+
T Consensus 649 wdek~~~~L~~~k~rl~eel~ei~~~~~----e~~-------~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~ 717 (1141)
T KOG0018|consen 649 WDEKEVDQLKEKKERLLEELKEIQKRRK----EVS-------SVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTE 717 (1141)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhhh----hHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777666666554110 333 33333333333333333355555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 001374 886 AEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQ 924 (1091)
Q Consensus 886 aElkeLqeKVesLE~ELe~ek~~~eEleaK~~eLEeQLe 924 (1091)
.++.+..-++..++.+++.....+.++..++.+.+..+-
T Consensus 718 ~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if 756 (1141)
T KOG0018|consen 718 SEIDEFGPEISEIKRKLQNREGEMKELEERMNKVEDRIF 756 (1141)
T ss_pred HHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666666666666666665554
No 315
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=70.33 E-value=8 Score=44.84 Aligned_cols=98 Identities=16% Similarity=0.261 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 001374 831 NLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVNLLRAKIESLENELQDEKMSHH 910 (1091)
Q Consensus 831 klEel~~qLqelE~~LeELesQLesLqeS~selEeqLk~~~e~ledLesrL~eLeaElkeLqeKVesLE~ELe~ek~~~e 910 (1091)
++-.+...|..+...+.+++..|..+...+..+...+..+...+.++...+......+-.|+..|..+.-++..++....
T Consensus 57 ~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVS 136 (326)
T PF04582_consen 57 TISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVS 136 (326)
T ss_dssp -------------------------------------------------------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhh
Confidence 33333333333333333333333333333333334444444444444445555556677777777778888888888888
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 001374 911 NAMAKCKELEEQLQRNEN 928 (1091)
Q Consensus 911 EleaK~~eLEeQLe~~~~ 928 (1091)
...-.|.+|+.++..++.
T Consensus 137 t~aL~ItdLe~RV~~LEs 154 (326)
T PF04582_consen 137 TQALNITDLESRVKALES 154 (326)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred hhcchHhhHHHHHHHHhc
Confidence 888888888888877664
No 316
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=70.27 E-value=1.1e+02 Score=33.18 Aligned_cols=72 Identities=17% Similarity=0.113 Sum_probs=35.1
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001374 232 EIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLV 303 (1091)
Q Consensus 232 Ei~LLkERIenlEKEne~LK~EL~~LqeELEiL~EElE~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l~ 303 (1091)
+..-+.+++.....+...+...+..++..+-.+..+........++..+.+..+......+.++|...+.-.
T Consensus 111 ~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F 182 (190)
T PF05266_consen 111 ERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEF 182 (190)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444555555555555544444444444444455555555555555555555544433
No 317
>PRK12705 hypothetical protein; Provisional
Probab=70.12 E-value=2.9e+02 Score=34.49 Aligned_cols=50 Identities=20% Similarity=0.175 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 164 EHEQKLQDFVLTKTKQWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQ 213 (1091)
Q Consensus 164 eqeqki~~~~~~~~~e~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLE 213 (1091)
+-+....+++.....++...+.+.+..+.+...++......+......++
T Consensus 45 ~a~~~~~~~~~~~~~~~~~~~~~~e~e~~~~~~~~~~~e~rl~~~e~~l~ 94 (508)
T PRK12705 45 EAEEKLEAALLEAKELLLRERNQQRQEARREREELQREEERLVQKEEQLD 94 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455666666777777777776666655555555444433333333
No 318
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=69.91 E-value=10 Score=44.80 Aligned_cols=93 Identities=19% Similarity=0.278 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 001374 836 KSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHA----QELEAEVNLLRAKIESLENELQDEKMSHHN 911 (1091)
Q Consensus 836 ~~qLqelE~~LeELesQLesLqeS~selEeqLk~~~e~ledLesrL----~eLeaElkeLqeKVesLE~ELe~ek~~~eE 911 (1091)
..........+.++...+..++..+..+......+...+..+.... ..+..++.++..+|+.++..++........
T Consensus 90 ~e~~ek~~k~l~el~~~~~elkkEie~IKk~q~e~~~~i~~~~~~~~~~~~~l~~Ri~e~Eeris~lEd~~~~i~~~~~~ 169 (370)
T PF02994_consen 90 KEEKEKSIKELNELKKRIKELKKEIENIKKNQSEMKLEIENLKKKLENIDESLNSRIDELEERISELEDRIEEIEQAIKE 169 (370)
T ss_dssp ----------------------------H-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHH
Confidence 3333334444445555555555544433333333333333333222 234566777777777777777777777777
Q ss_pred HHHHHHHHHHHHHhhhh
Q 001374 912 AMAKCKELEEQLQRNEN 928 (1091)
Q Consensus 912 leaK~~eLEeQLe~~~~ 928 (1091)
+..++..|+..|..+..
T Consensus 170 ~~k~i~~l~~kl~DlEn 186 (370)
T PF02994_consen 170 LEKRIKKLEDKLDDLEN 186 (370)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 77777777777766654
No 319
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=69.22 E-value=18 Score=42.16 Aligned_cols=44 Identities=25% Similarity=0.367 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 815 KLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQK 858 (1091)
Q Consensus 815 EsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqe 858 (1091)
+..+..++..+...+..+...+..+.+++..|..|+.+++....
T Consensus 220 ~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~ 263 (344)
T PF12777_consen 220 RQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQK 263 (344)
T ss_dssp HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444555555555555444444
No 320
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=69.15 E-value=2.2e+02 Score=32.67 Aligned_cols=52 Identities=19% Similarity=0.154 Sum_probs=36.9
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhHHHHhhhh-hhHHHHHhhhhHHHHHHHHH
Q 001374 106 TKVAEEAVSGWEKAEAEALALKNHLESVTLSK-LTAEDRAAHLDGALKECMRQ 157 (1091)
Q Consensus 106 ~kvaeeav~gwekae~e~~~lK~~Le~~~~q~-~~le~rv~hLd~aLKec~~q 157 (1091)
..+||-+|..|..+...+..+...|..+.... ...+.++.++...|..-.++
T Consensus 135 taaAe~~~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~L~~l~~~l~~~~~~ 187 (319)
T PF02601_consen 135 TAAAELIVPDRRELLQRLDELRQRLNRAMRNRLQRKRQRLNQLAKRLQLQSRR 187 (319)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 46799999999999988888888877765443 33456666666666655544
No 321
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=68.69 E-value=3e+02 Score=34.23 Aligned_cols=48 Identities=25% Similarity=0.400 Sum_probs=22.4
Q ss_pred HHHHhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhh-HHHHHHHHH
Q 001374 141 EDRAAHLDGALKECMRQIRNLKEEHEQKLQDFVLTKTKQ-WDKIRLEFE 188 (1091)
Q Consensus 141 e~rv~hLd~aLKec~~qLr~~reeqeqki~~~~~~~~~e-~e~~~~ELE 188 (1091)
..-+.|....+..-.++|..++...+.++..++..+..+ ++++..++.
T Consensus 250 ~~~i~~a~~~i~~L~~~l~~l~~~~~~~l~~~L~~q~~e~~~~~~~~~~ 298 (582)
T PF09731_consen 250 NSLIAHAKERIDALQKELAELKEEEEEELERALEEQREELLSKLREELE 298 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444445555555555555544444 444444444
No 322
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=68.52 E-value=2.7e+02 Score=33.50 Aligned_cols=113 Identities=25% Similarity=0.355 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHhhhhcchhhHHHHhhHHHHHHH----hh----------hhHHHHHHHHHHHHhHHHHhhhhhhHHHH
Q 001374 78 EEQIKELNEKLSAANSEISAKEDLVKQHTKVAEEA----VS----------GWEKAEAEALALKNHLESVTLSKLTAEDR 143 (1091)
Q Consensus 78 ~~~~k~l~ekls~a~~~~~~kd~lvkqh~kvaeea----v~----------gwekae~e~~~lK~~Le~~~~q~~~le~r 143 (1091)
+++.+.|.|-.+.-+-++ +++.--|.|-.--+ -+ |-+--+.||-+|+.|||.-..+.-+++.-
T Consensus 244 Edq~~~LsE~~~k~~q~L---e~~~~~~~~~~P~t~~~~~~~~e~~~~~sD~~~~L~k~vQ~L~AQle~~R~q~e~~q~~ 320 (593)
T KOG4807|consen 244 EDQQNRLSEEIEKKWQEL---EKLPLRENKRVPLTALLNQSRGERRGPPSDGHEALEKEVQALRAQLEAWRLQGEAPQSA 320 (593)
T ss_pred HHHHHHHHHHHHHHHHHH---HhhhhhhcCCCCccccCCCccccccCCCCcchHHHHHHHHHHHHHHHHHHHhccCchhh
Confidence 667778887777766555 23333333322222 23 44455789999999999998887776665
Q ss_pred HhhhhHH-------H-HHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 001374 144 AAHLDGA-------L-KECMRQIRNLKEEHEQKLQDFVLTKTKQWDKIRLEFEAKIAN 193 (1091)
Q Consensus 144 v~hLd~a-------L-Kec~~qLr~~reeqeqki~~~~~~~~~e~e~~~~ELEaKLaE 193 (1091)
+..+++- + --|.|-+--..+-+-++|-|.--.--+|+++++.+...-+++
T Consensus 321 ~~s~~d~~~~~~~~~qatCERgfAaMEetHQkkiEdLQRqHqRELekLreEKdrLLAE 378 (593)
T KOG4807|consen 321 LRSQEDGHIPPGYISQATCERGFAAMEETHQKKIEDLQRQHQRELEKLREEKDRLLAE 378 (593)
T ss_pred HhhhhhccCCccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 5554431 2 347777766667677777776666667777777766655544
No 323
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=67.27 E-value=3.8e+02 Score=35.53 Aligned_cols=67 Identities=18% Similarity=0.081 Sum_probs=36.1
Q ss_pred HHhhhhhhHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 132 SVTLSKLTAEDRAAHLDGALKECMRQIRNLKEEHEQKLQDFVLTKTKQWDKIRLEFEAKIANFEQELLRSAAENATLSR 210 (1091)
Q Consensus 132 ~~~~q~~~le~rv~hLd~aLKec~~qLr~~reeqeqki~~~~~~~~~e~e~~~~ELEaKLaElEkeLeelkaEl~aLee 210 (1091)
...-+...++-|+...+.-.+.|++..+ .......++|+-...++..+..++.+...+..++.....
T Consensus 471 ~ls~el~el~k~l~~Ke~l~rr~~~~~~------------~~~~~~~~~e~~~~~le~e~~~le~E~~~l~~el~~~~~ 537 (913)
T KOG0244|consen 471 SLSGELSELEKRLAEKEPLTRRKAYEKA------------EKSKAKEQYESDSGTLEAEKSPLESERSRLRNELNVFNR 537 (913)
T ss_pred hhhHHHHHHHhhhccccHHHHHHHHhhh------------hhhHHHHHHhhhhhhHHHHhcccccccHHHHHHHHhhhH
Confidence 3344444455555555555555553222 223334455666666666666666666666666666555
No 324
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=67.08 E-value=56 Score=40.15 Aligned_cols=33 Identities=18% Similarity=0.184 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 809 EEFEELKLEKDNLATDLARCTENLEMTKSQLYE 841 (1091)
Q Consensus 809 EelEqLEsEkeelE~eLee~~eklEel~~qLqe 841 (1091)
+++..++.++..++.++..+++++..+..++.-
T Consensus 71 ~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~ 103 (525)
T TIGR02231 71 ERLAELRKQIRELEAELRDLEDRGDALKALAKF 103 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666666555555555533
No 325
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=66.53 E-value=1.3e+02 Score=29.15 Aligned_cols=30 Identities=20% Similarity=0.328 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 001374 894 KIESLENELQDEKMSHHNAMAKCKELEEQL 923 (1091)
Q Consensus 894 KVesLE~ELe~ek~~~eEleaK~~eLEeQL 923 (1091)
+|+.++..+..+......+..-+..|+.++
T Consensus 67 ~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k~ 96 (99)
T PF10046_consen 67 QIDQIEEQVTELEQTVYELDEYSKELESKF 96 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333344444444444444444444433
No 326
>COG5283 Phage-related tail protein [Function unknown]
Probab=66.24 E-value=3.2e+02 Score=37.10 Aligned_cols=117 Identities=12% Similarity=0.103 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 001374 809 EEFEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEV 888 (1091)
Q Consensus 809 EelEqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selEeqLk~~~e~ledLesrL~eLeaEl 888 (1091)
..++.|.+-+......-..++.+..-+..-+....-+++.|..-.++...-...+..++.+........+..|.++.+++
T Consensus 22 ~~in~L~ssi~~~~~~~k~~e~q~k~t~~~ls~s~~k~~~l~eameK~k~~~~~~kqe~~evn~at~a~~kay~e~~~q~ 101 (1213)
T COG5283 22 KNINVLKSSIKDSTQFWKMLEKQQKLTKDGLSASKGKYEGLSEAMEKQKKAYEDLKQEVKEVNRATQASKKAYQEYNAQY 101 (1213)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Q 001374 889 NLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQR 925 (1091)
Q Consensus 889 keLqeKVesLE~ELe~ek~~~eEleaK~~eLEeQLe~ 925 (1091)
.+...++.++...+.--..++.--+..++.++.+|..
T Consensus 102 tqae~~~~sas~q~~~a~~q~~~~~~~iq~~~~~is~ 138 (1213)
T COG5283 102 TQAENKLRSLSGQFGVASEQLMLQQKEIQRLQYAIST 138 (1213)
T ss_pred HHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHh
Confidence 6666666666655555444444444445555554443
No 327
>PRK04406 hypothetical protein; Provisional
Probab=66.23 E-value=40 Score=31.36 Aligned_cols=46 Identities=9% Similarity=0.176 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 001374 196 QELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIE 241 (1091)
Q Consensus 196 keLeelkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIe 241 (1091)
.++..+...+.-++..++.++..+.+....+.++..++..+.+|+.
T Consensus 11 ~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~ 56 (75)
T PRK04406 11 ERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVK 56 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444444444444444444443
No 328
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=66.16 E-value=2.3e+02 Score=34.19 Aligned_cols=19 Identities=26% Similarity=0.176 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001374 275 AEAANKQHMEGVKKIAKLE 293 (1091)
Q Consensus 275 aeal~KQ~lEl~KKLaKLE 293 (1091)
+..++.-+...+.+|.++|
T Consensus 300 aRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 300 ARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HhHHHHHHHHHHHHHHHHH
Confidence 3556666677777777777
No 329
>PRK11519 tyrosine kinase; Provisional
Probab=65.98 E-value=1.3e+02 Score=38.67 Aligned_cols=31 Identities=23% Similarity=0.233 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 821 LATDLARCTENLEMTKSQLYETEQLLAEVKA 851 (1091)
Q Consensus 821 lE~eLee~~eklEel~~qLqelE~~LeELes 851 (1091)
....+.-+.+++..++.+|..++..+...+.
T Consensus 265 a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~ 295 (719)
T PRK11519 265 ASKSLAFLAQQLPEVRSRLDVAENKLNAFRQ 295 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555444
No 330
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=65.52 E-value=2.5e+02 Score=32.03 Aligned_cols=46 Identities=22% Similarity=0.310 Sum_probs=28.4
Q ss_pred HHhhHHHHHHHhhhhHHHHHHH-HHHHHhHHHHhhhhhhHHHHHhhh
Q 001374 102 VKQHTKVAEEAVSGWEKAEAEA-LALKNHLESVTLSKLTAEDRAAHL 147 (1091)
Q Consensus 102 vkqh~kvaeeav~gwekae~e~-~~lK~~Le~~~~q~~~le~rv~hL 147 (1091)
.|||.--+.|-.--+----+|+ +.|..||+.+..++..|+-|+..|
T Consensus 25 ykq~f~~~reEl~EFQegSrE~EaelesqL~q~etrnrdl~t~nqrl 71 (333)
T KOG1853|consen 25 YKQHFLQMREELNEFQEGSREIEAELESQLDQLETRNRDLETRNQRL 71 (333)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3777776666554333222222 235668888888888888877665
No 331
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=65.43 E-value=33 Score=31.16 Aligned_cols=50 Identities=12% Similarity=0.246 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 001374 195 EQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCE 244 (1091)
Q Consensus 195 EkeLeelkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIenlE 244 (1091)
+.++..+...+..++..++.++..+......+.+++.++..+..|+..+.
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34445555555566666666666666666666666666666666666544
No 332
>PRK14011 prefoldin subunit alpha; Provisional
Probab=65.37 E-value=1.4e+02 Score=31.23 Aligned_cols=43 Identities=14% Similarity=0.146 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 816 LEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQK 858 (1091)
Q Consensus 816 sEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqe 858 (1091)
.+++.+-..|+.++.+++.+..++..+...+.++..-++.++.
T Consensus 3 ~elq~~~~~l~~~~~qie~L~~si~~L~~a~~e~~~~ie~L~~ 45 (144)
T PRK14011 3 EELQNQFMALEVYNQQVQKLQEELSSIDMMKMELLKSIESMEG 45 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3455566777777777777777777777777777666666653
No 333
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=65.36 E-value=4e+02 Score=34.33 Aligned_cols=128 Identities=14% Similarity=0.136 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHhhHHH---------HHHHHHHHHHHHHHHH
Q 001374 196 QELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIEL--------LKGNIEQ---------CEREINSAKYELHIVS 258 (1091)
Q Consensus 196 keLeelkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~L--------LkERIen---------lEKEne~LK~EL~~Lq 258 (1091)
.+|+.++..+..|..+...+-+.+..+...+..+-+.+.+ ....+.. ....+.+|..-+..+.
T Consensus 160 ~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~~l~~~Lg~~~~~~vt~~~~sL~~~~~~~~~~is~etl~~L~~~v~~l~ 239 (660)
T KOG4302|consen 160 EKLEELREHLNELQKEKSDRLEKVLELKEEIKSLCSVLGLDFSMTVTDVEPSLVDHDGEQSRSISDETLDRLDKMVKKLK 239 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhhhhhhhccCcccccCCHHHHHHHHHHHHHHH
Confidence 6777778888888777777777777776666655444321 1111111 2235566777777777
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHhhhhhccCCChHHHHHH
Q 001374 259 KELEIRNEEKNMSMRSAEAANKQHMEGV----------------------KKIAKLEAECQRLRGLVRKKLPGPAALAQM 316 (1091)
Q Consensus 259 eELEiL~EElE~s~qsaeal~KQ~lEl~----------------------KKLaKLEaEcqrLr~l~rk~lpgpaa~a~m 316 (1091)
.+...+...+..+..++..+|..+.... .-|..++.|+.++..|=..+ =+.-|-+|
T Consensus 240 ~~k~qr~~kl~~l~~~~~~LWn~l~ts~Ee~~~f~~~t~~e~t~~~~ls~d~I~~ve~Ev~Rl~qlK~s~--mKeli~k~ 317 (660)
T KOG4302|consen 240 EEKKQRLQKLQDLRTKLLELWNLLDTSDEERQRFVHVTESEATEPNSLSLDIIEQVEKEVDRLEQLKASN--MKELIEKK 317 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHccccHHHhhccccccHHHHHHHHHHHHHHHHHHHHh--HHHHHHHH
Confidence 7777777777777777777776543322 34566679999999986555 46888999
Q ss_pred HHHHhhhcC
Q 001374 317 KMEVESLGR 325 (1091)
Q Consensus 317 k~ev~~l~~ 325 (1091)
|.|++-+-+
T Consensus 318 r~Eleel~~ 326 (660)
T KOG4302|consen 318 RSELEELWR 326 (660)
T ss_pred HHHHHHHHH
Confidence 999998654
No 334
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=65.35 E-value=3.5e+02 Score=33.71 Aligned_cols=62 Identities=13% Similarity=0.131 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHhhhc
Q 001374 260 ELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLVRKKLPGPAALAQMKMEVESLG 324 (1091)
Q Consensus 260 ELEiL~EElE~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l~rk~lpgpaa~a~mk~ev~~l~ 324 (1091)
.|+.+...+..+.+.+... .........+..|-..|..|+..+...-+|+ -.-+..||..|.
T Consensus 379 ~l~~~~~~~~~le~~~~~~-~~~~~~~~~~~~l~~a~~~l~~~l~~~~~~~--~~p~~~el~~l~ 440 (582)
T PF09731_consen 379 KLAELNSRLKALEEALDAR-SEAEDENRRAQQLWLAVDALKSALDSGNAGS--PRPFEDELRALK 440 (582)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCCCcC--CCCHHHHHHHHH
Confidence 3344444444444333322 2233344556677777777777777764322 112456666554
No 335
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=65.23 E-value=1.2e+02 Score=28.41 Aligned_cols=32 Identities=22% Similarity=0.370 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 001374 884 LEAEVNLLRAKIESLENELQDEKMSHHNAMAK 915 (1091)
Q Consensus 884 LeaElkeLqeKVesLE~ELe~ek~~~eEleaK 915 (1091)
+...+..+...+..++.+++..+..+.+...+
T Consensus 57 l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~ 88 (123)
T PF02050_consen 57 LEQAIQQQQQELERLEQEVEQAREELQEARRE 88 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444433333
No 336
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=65.22 E-value=58 Score=34.22 Aligned_cols=66 Identities=14% Similarity=0.204 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Q 001374 808 LEEFEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAES 873 (1091)
Q Consensus 808 ~EelEqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selEeqLk~~~e~ 873 (1091)
.+.+..+.......++.|......+......++.+...|+.|+..+..+...++....++.-..+.
T Consensus 43 ne~id~imer~~~ieNdlg~~~~~~~g~kk~~~~~~eelerLe~~iKdl~~lye~Vs~d~Npf~s~ 108 (157)
T COG3352 43 NEVIDAIMERMTDIENDLGKVKIEIEGQKKQLQDIKEELERLEENIKDLVSLYELVSRDFNPFMSK 108 (157)
T ss_pred hHHHHHHHHHHHHHHhhcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhh
Confidence 457788888888888888877777777777777777777777777777766655555555544443
No 337
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=64.56 E-value=2e+02 Score=33.42 Aligned_cols=80 Identities=19% Similarity=0.245 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH------HHHHHHHHHHH
Q 001374 848 EVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVNLLRAKIESLENELQDEKMSHH------NAMAKCKELEE 921 (1091)
Q Consensus 848 ELesQLesLqeS~selEeqLk~~~e~ledLesrL~eLeaElkeLqeKVesLE~ELe~ek~~~e------EleaK~~eLEe 921 (1091)
.|..||..+-.....+..++..+.+.|+.++.-...-...+.+.-..++.+++|++..=+.+. .+..-+.+|++
T Consensus 270 ~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~~KqemEe~G~~msDGaplvkIkqavsKLk~ 349 (384)
T KOG0972|consen 270 SLNNQLASLMQKFRRATDTLSELREKYKQASVGVSSRTETLDEVMDEIEQLKQEMEEQGAKMSDGAPLVKIKQAVSKLKE 349 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCchHHHHHHHHHHHHH
Confidence 344444444443333344555555555555555555556666666666666777666554443 44555555655
Q ss_pred HHHhhh
Q 001374 922 QLQRNE 927 (1091)
Q Consensus 922 QLe~~~ 927 (1091)
+...+.
T Consensus 350 et~~mn 355 (384)
T KOG0972|consen 350 ETQTMN 355 (384)
T ss_pred HHHhhh
Confidence 555433
No 338
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=64.38 E-value=81 Score=28.94 Aligned_cols=53 Identities=11% Similarity=0.061 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 001374 198 LLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSA 250 (1091)
Q Consensus 198 LeelkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIenlEKEne~L 250 (1091)
...++..++.+.+.+......+-.+..+.......+...-..+..+..+++.|
T Consensus 7 ~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L 59 (69)
T PF14197_consen 7 IATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEAL 59 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444433333333333333
No 339
>KOG3501 consensus Molecular chaperone Prefoldin, subunit 1 [Posttranslational modification, protein turnover, chaperones]
Probab=64.23 E-value=1.6e+02 Score=29.37 Aligned_cols=98 Identities=16% Similarity=0.063 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH--------HHhHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 825 LARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCM--------AESYRSLETHAQELEAEVNLLRAKIE 896 (1091)
Q Consensus 825 Lee~~eklEel~~qLqelE~~LeELesQLesLqeS~selEeqLk~~--------~e~ledLesrL~eLeaElkeLqeKVe 896 (1091)
+..++.+.-.++.+++-..-+++.++..+.-.....-+++.....- .-.+.+.......++++++...++|.
T Consensus 5 f~~lQ~K~~dtqq~~~~~~vQi~~~nr~kk~~~l~~ke~~~~~de~~~Y~svgrmF~l~dk~a~~s~leak~k~see~Ie 84 (114)
T KOG3501|consen 5 FSQLQEKAVDTQQQLRTIMVQIAAKNRAKKISELAKKELEDVGDEKAVYTSVGRMFMLSDKAAVRSHLEAKMKSSEEKIE 84 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhHHHHHH
Confidence 3444445555555555555455544444444433333333333321 11334455555667899999999999
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHH
Q 001374 897 SLENELQDEKMSHHNAMAKCKELEEQ 922 (1091)
Q Consensus 897 sLE~ELe~ek~~~eEleaK~~eLEeQ 922 (1091)
+|+....|+.....+.+.-+++|-+.
T Consensus 85 aLqkkK~YlEk~v~eaE~nLrellqs 110 (114)
T KOG3501|consen 85 ALQKKKTYLEKTVSEAEQNLRELLQS 110 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999998888887654
No 340
>PLN02939 transferase, transferring glycosyl groups
Probab=64.21 E-value=4.1e+02 Score=35.74 Aligned_cols=118 Identities=20% Similarity=0.202 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhHH-----------HHHHHHHHHHh
Q 001374 808 LEEFEELKLEKDNLATDLARCTENLEMTKSQLYETEQ---LLAEVKAQLASAQKSNSL-----------AETQLKCMAES 873 (1091)
Q Consensus 808 ~EelEqLEsEkeelE~eLee~~eklEel~~qLqelE~---~LeELesQLesLqeS~se-----------lEeqLk~~~e~ 873 (1091)
.++++++-.|++.++.+++-+..++.++..+++-+-+ ..+-++.+++++...+.. +-.++..+.++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (977)
T PLN02939 155 LEDLEKILTEKEALQGKINILEMRLSETDARIKLAAQEKIHVEILEEQLEKLRNELLIRGATEGLCVHSLSKELDVLKEE 234 (977)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhhhhccccchhhHHHHHHHhhhhhccccccccccccHHHHHHHHHHH
Confidence 3566666666666666666666555554333322211 011122222222221111 22333333333
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Q 001374 874 YRSLETHAQELE---AEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQR 925 (1091)
Q Consensus 874 ledLesrL~eLe---aElkeLqeKVesLE~ELe~ek~~~eEleaK~~eLEeQLe~ 925 (1091)
.-.+...++.++ .++.+..+.+-.|++|-..++..+.+++.++..-++-+..
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (977)
T PLN02939 235 NMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVSK 289 (977)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 333333333333 4455566667777777777777777777666555444443
No 341
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=63.76 E-value=2.3e+02 Score=31.11 Aligned_cols=97 Identities=22% Similarity=0.314 Sum_probs=63.8
Q ss_pred HhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 144 AAHLDGALKECMRQIRNLKEEHEQKLQDFVLTKTKQWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKIS 223 (1091)
Q Consensus 144 v~hLd~aLKec~~qLr~~reeqeqki~~~~~~~~~e~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLEelqeeI~EL~ 223 (1091)
++.|-..-.+|-+.+..+.+...+....+ ..+.+.+...+..++..++..|......+..+...+..+.. +.
T Consensus 6 l~yL~~~~~e~~~~i~~L~~q~~~~~~~i----~~~r~~l~s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq~l~~----~~ 77 (206)
T PF14988_consen 6 LEYLKKKDEEKEKKIEKLWKQYIQQLEEI----QRERQELVSRYAKQTSELQDQLLQKEKEQAKLQQELQALKE----FR 77 (206)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----HH
Confidence 45566666777777777777766666555 46667788888888888888888888888888877776632 33
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHH
Q 001374 224 EEKSQAEAEIELLKGNIEQCEREIN 248 (1091)
Q Consensus 224 eeiErlEgEi~LLkERIenlEKEne 248 (1091)
...+..+.+|.-|+..+.....+..
T Consensus 78 ~~k~~qe~eI~~Le~e~~~~~~e~~ 102 (206)
T PF14988_consen 78 RLKEQQEREIQTLEEELEKMRAEHA 102 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445444444444444433
No 342
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=63.76 E-value=1.2e+02 Score=34.96 Aligned_cols=15 Identities=13% Similarity=0.098 Sum_probs=8.1
Q ss_pred hHHHHHHHHHHHHHH
Q 001374 943 QDRDLAAAAERLAEC 957 (1091)
Q Consensus 943 qEkEIaaAeeKLAEc 957 (1091)
.+.+|++-..||...
T Consensus 150 YFvDINiQN~KLEsL 164 (305)
T PF15290_consen 150 YFVDINIQNKKLESL 164 (305)
T ss_pred HHhhhhhhHhHHHHH
Confidence 344566555665544
No 343
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=63.36 E-value=1.7e+02 Score=32.05 Aligned_cols=42 Identities=17% Similarity=0.246 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Q 001374 884 LEAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQR 925 (1091)
Q Consensus 884 LeaElkeLqeKVesLE~ELe~ek~~~eEleaK~~eLEeQLe~ 925 (1091)
....-...+.....|+.+....+.++..+..+|..|+.+.+.
T Consensus 145 va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~~~ 186 (192)
T PF11180_consen 145 VAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQANE 186 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 334445556666667777777777777777777777766653
No 344
>PRK10698 phage shock protein PspA; Provisional
Probab=63.16 E-value=2.4e+02 Score=31.16 Aligned_cols=27 Identities=11% Similarity=0.052 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 001374 215 RSNMLIKISEEKSQAEAEIELLKGNIE 241 (1091)
Q Consensus 215 lqeeI~EL~eeiErlEgEi~LLkERIe 241 (1091)
+...+..|...+.....+...|..|..
T Consensus 118 L~~~l~~L~~ki~eak~k~~~L~aR~~ 144 (222)
T PRK10698 118 MKKEIGELENKLSETRARQQALMLRHQ 144 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444444443
No 345
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=63.12 E-value=58 Score=29.72 Aligned_cols=59 Identities=19% Similarity=0.230 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 001374 186 EFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCE 244 (1091)
Q Consensus 186 ELEaKLaElEkeLeelkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIenlE 244 (1091)
.++.++..+=...+.++.+|..|..++..+..+-..+.++.+.+.+++..+-.|+.+++
T Consensus 4 ~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~le 62 (65)
T TIGR02449 4 ALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 47778888888888888888888888888777777777777777777777666666554
No 346
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=63.05 E-value=1.8e+02 Score=29.60 Aligned_cols=35 Identities=17% Similarity=0.337 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001374 167 QKLQDFVLTKTKQWDKIRLEFEAKIANFEQELLRS 201 (1091)
Q Consensus 167 qki~~~~~~~~~e~e~~~~ELEaKLaElEkeLeel 201 (1091)
..|...+..-...|+.+......+...++..+...
T Consensus 75 ~~i~~~~~~l~~~w~~l~~~~~~r~~~L~~~~~~~ 109 (213)
T cd00176 75 EEIQERLEELNQRWEELRELAEERRQRLEEALDLQ 109 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556666777777777777766665554443
No 347
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=63.00 E-value=3.6e+02 Score=33.07 Aligned_cols=67 Identities=21% Similarity=0.206 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhhhccCCChHHHHHHHHHHh
Q 001374 255 HIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRL----RGLVRKKLPGPAALAQMKMEVE 321 (1091)
Q Consensus 255 ~~LqeELEiL~EElE~s~qsaeal~KQ~lEl~KKLaKLEaEcqrL----r~l~rk~lpgpaa~a~mk~ev~ 321 (1091)
+....+++.+.-++.+....++.++-|+..+.-.|..+|+....+ +.-+|.++|--|.+-.|+.+.+
T Consensus 305 tas~~E~ee~rve~~~s~ed~~~~q~q~~~Lrs~~~d~EAq~r~l~s~~~~q~~~~h~~ka~~~~~~~~l~ 375 (554)
T KOG4677|consen 305 TASRKEFEETRVELPFSAEDSAHIQDQYTLLRSQIIDIEAQDRHLESAGQTQIFRKHPRKASILNMPLVLT 375 (554)
T ss_pred hhHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHhhhHhhhhhhchHHHH
Confidence 445667777888888888888888888888888888888777544 4456778888888888877654
No 348
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=62.73 E-value=1.3e+02 Score=36.48 Aligned_cols=92 Identities=14% Similarity=0.182 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 001374 811 FEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVNL 890 (1091)
Q Consensus 811 lEqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selEeqLk~~~e~ledLesrL~eLeaElke 890 (1091)
+..|.++.+.++.+.+.+..-++.+..+-+.. ..+++..+++.+..+-..+..+++.....-.++...+.+++.+..+
T Consensus 145 ~~~ld~e~~~~~~e~~~Y~~~l~~Le~~~~~~--~~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~ 222 (447)
T KOG2751|consen 145 LNKLDKEVEDAEDEVDTYKACLQRLEQQNQDV--SEEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAER 222 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCccc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666676666666665555555554444433 5566666777776666667777777777777777777777766666
Q ss_pred HHHHHHHHHHHHHH
Q 001374 891 LRAKIESLENELQD 904 (1091)
Q Consensus 891 LqeKVesLE~ELe~ 904 (1091)
+.++...+-.+...
T Consensus 223 ~~e~~~~~~~ey~~ 236 (447)
T KOG2751|consen 223 LNEEEDQYWREYNN 236 (447)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666655555443
No 349
>PF15294 Leu_zip: Leucine zipper
Probab=62.71 E-value=2.9e+02 Score=31.89 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=17.9
Q ss_pred HHHHHHHHhhhhhHHHHHHHHH
Q 001374 377 KMLKEALAKRNSELQASRNLCA 398 (1091)
Q Consensus 377 k~lke~l~~k~~elq~sr~~~a 398 (1091)
+.||++|++||.++-..|.-++
T Consensus 256 ~NMk~~ltkKn~QiKeLRkrl~ 277 (278)
T PF15294_consen 256 RNMKEILTKKNEQIKELRKRLA 277 (278)
T ss_pred HHhHHHHHhccHHHHHHHHHhc
Confidence 4689999999999988886554
No 350
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=62.51 E-value=99 Score=28.64 Aligned_cols=11 Identities=18% Similarity=0.196 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q 001374 910 HNAMAKCKELE 920 (1091)
Q Consensus 910 eEleaK~~eLE 920 (1091)
......+..|+
T Consensus 57 ~~~e~~~~~l~ 67 (74)
T PF12329_consen 57 EELEKELESLE 67 (74)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 351
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.21 E-value=3.9e+02 Score=33.22 Aligned_cols=29 Identities=24% Similarity=0.390 Sum_probs=18.9
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHH
Q 001374 361 ENEFLTERLLAMEEETKMLKEALAKRNSELQASRNL 396 (1091)
Q Consensus 361 ~~~~l~~rl~~~eee~k~lke~l~~k~~elq~sr~~ 396 (1091)
....|++|+. .|..++++||--+.|.-.-
T Consensus 475 Dka~lieriv-------rLQ~a~arknekiefLe~h 503 (613)
T KOG0992|consen 475 DKADLIERIV-------RLQLAIARKNEKIEFLEQH 503 (613)
T ss_pred hhHHHHHHHH-------HHHHHHHHhhhHhHHHHHH
Confidence 3555666664 3567778888888776543
No 352
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=62.09 E-value=1.8e+02 Score=33.11 Aligned_cols=52 Identities=15% Similarity=0.162 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 001374 817 EKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLK 868 (1091)
Q Consensus 817 EkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selEeqLk 868 (1091)
.+..++..+..++.++..+...+..+...+..++.++..++..+..++.+++
T Consensus 81 ~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~l~~a~~~~~ 132 (334)
T TIGR00998 81 ALAKAEANLAALVRQTKQLEITVQQLQAKVESLKIKLEQAREKLLQAELDLR 132 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3333444444444444444444444444444444444444443333333444
No 353
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=61.90 E-value=5.4 Score=39.38 Aligned_cols=45 Identities=24% Similarity=0.253 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 814 LKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQK 858 (1091)
Q Consensus 814 LEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqe 858 (1091)
....+..+...+..+..++..+..++..+...+..++.....++.
T Consensus 23 VD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~ 67 (131)
T PF05103_consen 23 VDDFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQR 67 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 344445555555555555555555555544444444444444444
No 354
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=61.89 E-value=4.1e+02 Score=33.33 Aligned_cols=54 Identities=26% Similarity=0.364 Sum_probs=39.9
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHhhh
Q 001374 361 ENEFLTERLLAMEEETKMLKEALAKRNSELQASRNLCAKTASKLQSLEAQMQTS 414 (1091)
Q Consensus 361 ~~~~l~~rl~~~eee~k~lke~l~~k~~elq~sr~~~a~t~~kl~~~e~q~~~~ 414 (1091)
...-+.++|..++++-+.+.+.|..-..+-+.+|-...+--.+|..+.+.+...
T Consensus 380 ~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~ 433 (560)
T PF06160_consen 380 ELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKS 433 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 445567788888888888888888877777777777777666777666666633
No 355
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=61.87 E-value=2.4e+02 Score=32.26 Aligned_cols=120 Identities=16% Similarity=0.166 Sum_probs=0.0
Q ss_pred HHHHhhhhhhHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 130 LESVTLSKLTAEDRAAHLDGALKECMRQIRNLKEEHEQKLQDFVLTKTKQWDKIRLEFEAKIANFEQELLRSAAENATLS 209 (1091)
Q Consensus 130 Le~~~~q~~~le~rv~hLd~aLKec~~qLr~~reeqeqki~~~~~~~~~e~e~~~~ELEaKLaElEkeLeelkaEl~aLe 209 (1091)
|....+.+...++.+-.+|.+|.+.-+++...+...+....+. ..-..........++.+...++..+..+...+....
T Consensus 178 L~~fl~~~~~~~~~ilq~d~~L~~~ek~~~~~~~k~e~~e~e~-~~l~e~~~~~~~~le~~~~~~ee~~~~L~ekme~e~ 256 (297)
T PF02841_consen 178 LQEFLQSKESMENSILQADQQLTEKEKEIEEEQAKAEAAEKEK-EKLEEKQKEQEQMLEQQERSYEEHIKQLKEKMEEER 256 (297)
T ss_dssp HHHHHHHCHHHHHHHHHH-TTS-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 001374 210 RSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAK 251 (1091)
Q Consensus 210 eqLEelqeeI~EL~eeiErlEgEi~LLkERIenlEKEne~LK 251 (1091)
..+..-.+.+... ...++.+--....+.+...+.++|..|+
T Consensus 257 ~~~~~e~e~~l~~-k~~eq~~~l~e~~~~~~~~l~~ei~~L~ 297 (297)
T PF02841_consen 257 EQLLQEQERLLEQ-KLQEQEELLKEGFQEEAEKLQKEIQDLQ 297 (297)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHcC
No 356
>PRK10093 primosomal replication protein N''; Provisional
Probab=61.66 E-value=1.6e+02 Score=31.72 Aligned_cols=65 Identities=15% Similarity=0.238 Sum_probs=41.5
Q ss_pred HHHhhhHHHHHHHHHHHHHHHhhhhhhcccchhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001374 904 DEKMSHHNAMAKCKELEEQLQRNENCAVCSSEADENKIKQDRDLAAAAERLAECQETILLLGKQLKSLR 972 (1091)
Q Consensus 904 ~ek~~~eEleaK~~eLEeQLe~~~~~~lk~q~dkdLKikqEkEIaaAeeKLAEcQeTI~sLEKQLKsLa 972 (1091)
+.+.++.+.+.++..+-..=+..- ..........+..++|.++++.|+-|+..+..+|++|....
T Consensus 106 ~~~lqHQd~ERRL~~Mv~dre~~L----~~a~~~~~qq~lq~el~alegRL~RCrqAl~~IE~~Ier~e 170 (171)
T PRK10093 106 RKRIQHQEFERRLLEMVAERRARL----ARATDLVEQQTLHREVEAYEGRLARCRHALEKIENVLARLT 170 (171)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHH----HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344477777777655433322111 11111112334566999999999999999999999998754
No 357
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=60.92 E-value=1.9e+02 Score=33.21 Aligned_cols=8 Identities=25% Similarity=0.219 Sum_probs=3.5
Q ss_pred HHhHhhhc
Q 001374 497 LEMEKLAC 504 (1091)
Q Consensus 497 lEmEkLa~ 504 (1091)
-+|+++..
T Consensus 61 ~~~~~~~~ 68 (269)
T PF05278_consen 61 SEIECMKG 68 (269)
T ss_pred HHHHHHhc
Confidence 44444443
No 358
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=60.83 E-value=1.3e+02 Score=33.94 Aligned_cols=32 Identities=25% Similarity=0.320 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 827 RCTENLEMTKSQLYETEQLLAEVKAQLASAQK 858 (1091)
Q Consensus 827 e~~eklEel~~qLqelE~~LeELesQLesLqe 858 (1091)
.++.++..+...+.+.+..++.|+..|..++.
T Consensus 3 ~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~ 34 (248)
T PF08172_consen 3 ELQKELSELEAKLEEQKELNAKLENDLAKVQA 34 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34445555555566666666666666666664
No 359
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=60.51 E-value=4.4e+02 Score=33.27 Aligned_cols=166 Identities=20% Similarity=0.232 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 001374 809 EEFEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEV 888 (1091)
Q Consensus 809 EelEqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selEeqLk~~~e~ledLesrL~eLeaEl 888 (1091)
+.++.|...+......++....-.+.++.++..-+..+.--...+...+.....+..............-+.+.++....
T Consensus 421 e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~~~qee~~s~~~~~~e~~q~e~~~~Q~~~e~~~~e~~e~~~al~el~~~~ 500 (607)
T KOG0240|consen 421 ERIESLYQQLDQKDDQINKQSQLMEKLKEQLLDQEELLSSTRRLYEDIQQELSEIQEENEAAKDEVKEVLTALEELAVNY 500 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444444444444444444444444444444444433333444433333333333333333333333333333222
Q ss_pred HHHHHHHH---H--HHHHHHHHHhhhHHHHHHHHHHHHHHHhhhh--hhcc--cc------hhHhhhhhhHHHHHHHHHH
Q 001374 889 NLLRAKIE---S--LENELQDEKMSHHNAMAKCKELEEQLQRNEN--CAVC--SS------EADENKIKQDRDLAAAAER 953 (1091)
Q Consensus 889 keLqeKVe---s--LE~ELe~ek~~~eEleaK~~eLEeQLe~~~~--~~lk--~q------~dkdLKikqEkEIaaAeeK 953 (1091)
....+.+. . ++.+|..++.....-..++..+..++-...+ .+.. .. .-+++....-..+......
T Consensus 501 ~~~~~~~~~~~~~n~~sel~sl~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~q~e~~~~~~~~~~~~~~~~ 580 (607)
T KOG0240|consen 501 DQKSEEKESKLSQNLKSELQSLQEPSEHQSKRITELLSELRKDLGEIGWKIGTSSEKRLYIQLEVLQSESNTKMEQEEKE 580 (607)
T ss_pred hHHHHHHhhhhhhhhHHHHHhhhhcccchhHHHHHHHHHHHhhhccccccccCCcccceeeehhhhhhHHHHHHHHHHHh
Confidence 22222221 1 4666777777777777777777776665443 0000 00 0011111122234445567
Q ss_pred HHHHHHHHHHHHHHHHhhcCC
Q 001374 954 LAECQETILLLGKQLKSLRPQ 974 (1091)
Q Consensus 954 LAEcQeTI~sLEKQLKsLa~q 974 (1091)
+..|+.-|..++.-+++|++-
T Consensus 581 ~~~~k~~~s~hs~~~~slt~~ 601 (607)
T KOG0240|consen 581 LRPCKLLISQHSAKKKSLTES 601 (607)
T ss_pred hHHHHHHHHHHHHHHhccchh
Confidence 888999999999988888653
No 360
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=59.88 E-value=1.7e+02 Score=28.31 Aligned_cols=33 Identities=12% Similarity=0.243 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 001374 886 AEVNLLRAKIESLENELQDEKMSHHNAMAKCKE 918 (1091)
Q Consensus 886 aElkeLqeKVesLE~ELe~ek~~~eEleaK~~e 918 (1091)
.++..+...|..|+.-...+..-+..++.|++.
T Consensus 66 ~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k~k~ 98 (99)
T PF10046_consen 66 QQIDQIEEQVTELEQTVYELDEYSKELESKFKK 98 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344444445555555555555555555555543
No 361
>PRK02119 hypothetical protein; Provisional
Probab=59.81 E-value=58 Score=30.12 Aligned_cols=44 Identities=11% Similarity=0.131 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 001374 197 ELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNI 240 (1091)
Q Consensus 197 eLeelkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERI 240 (1091)
++..+...+..++..++.++..+.+....+..+..++..+.+|+
T Consensus 10 Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl 53 (73)
T PRK02119 10 RIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKL 53 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444444444444444443333
No 362
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=59.78 E-value=3.3e+02 Score=31.51 Aligned_cols=19 Identities=0% Similarity=-0.006 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001374 810 EFEELKLEKDNLATDLARC 828 (1091)
Q Consensus 810 elEqLEsEkeelE~eLee~ 828 (1091)
++.++++++..++..+...
T Consensus 87 ~l~~a~a~l~~a~a~l~~~ 105 (346)
T PRK10476 87 TVAQAQADLALADAQIMTT 105 (346)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433
No 363
>PRK02119 hypothetical protein; Provisional
Probab=59.61 E-value=52 Score=30.43 Aligned_cols=52 Identities=17% Similarity=0.319 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhh
Q 001374 876 SLETHAQELEAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNE 927 (1091)
Q Consensus 876 dLesrL~eLeaElkeLqeKVesLE~ELe~ek~~~eEleaK~~eLEeQLe~~~ 927 (1091)
.++.|+..|+..+.-+..-|+.|...+-.-...+..+.+++..|.++|..++
T Consensus 6 ~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 6 NLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3445555555555566666666666666666666666666666666665544
No 364
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=59.53 E-value=5e+02 Score=33.54 Aligned_cols=138 Identities=22% Similarity=0.270 Sum_probs=67.0
Q ss_pred HHHHHHhHHHHhhhhhhHHHHHhhhhHH-HHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001374 123 ALALKNHLESVTLSKLTAEDRAAHLDGA-LKECMRQIRNLKEEHEQKLQDFVLTKTKQWDKIRLEFEAKIANFEQELLRS 201 (1091)
Q Consensus 123 ~~~lK~~Le~~~~q~~~le~rv~hLd~a-LKec~~qLr~~reeqeqki~~~~~~~~~e~e~~~~ELEaKLaElEkeLeel 201 (1091)
+.-|..-|++-.+|.++++-.-+-|+.+ ++...+-++ . .....+...++.++-.+++.++++...+
T Consensus 355 i~~Ln~~leaReaqll~~e~~ka~lee~~~n~~~e~~~-~------------k~~~s~~ssl~~e~~QRva~lEkKvqa~ 421 (961)
T KOG4673|consen 355 IKMLNNALEAREAQLLADEIAKAMLEEEQLNSVTEDLK-R------------KSNESEVSSLREEYHQRVATLEKKVQAL 421 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-H------------HhhcccccchHHHHHHHHHHHHHHHHHH
Confidence 5555555665555555555443333333 222222111 1 1122344566666666666666666665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001374 202 AAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQ 281 (1091)
Q Consensus 202 kaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIenlEKEne~LK~EL~~LqeELEiL~EElE~s~qsaeal~KQ 281 (1091)
-.+.+++.+++..+.+++.. +|- ..+|....+.+..+...=+.+.++
T Consensus 422 ~kERDalr~e~kslk~ela~-----------------~l~----------------~DeLaEkdE~I~~lm~EGEkLSK~ 468 (961)
T KOG4673|consen 422 TKERDALRREQKSLKKELAA-----------------ALL----------------KDELAEKDEIINQLMAEGEKLSKK 468 (961)
T ss_pred HHhHHHHHHHHHHHHHHHHH-----------------hhh----------------hHHHHHHHHHHHHHHHHHHHhHHH
Confidence 55555555444333222211 110 012333334444444444556666
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcc
Q 001374 282 HMEGVKKIAKLEAECQRLRGLVRKK 306 (1091)
Q Consensus 282 ~lEl~KKLaKLEaEcqrLr~l~rk~ 306 (1091)
++....-|.+|.+.......|+.|+
T Consensus 469 ql~qs~iIkKLRAk~ke~etl~~K~ 493 (961)
T KOG4673|consen 469 QLAQSAIIKKLRAKIKEAETLEEKK 493 (961)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHh
Confidence 6666666666666666666666553
No 365
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=59.41 E-value=53 Score=29.82 Aligned_cols=46 Identities=17% Similarity=0.226 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001374 814 LKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKS 859 (1091)
Q Consensus 814 LEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS 859 (1091)
++..+.+++.++....+.++.+...+-.....|..|+.++..+...
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~r 47 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRER 47 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666666666666666655555555553
No 366
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=59.40 E-value=2.6e+02 Score=30.23 Aligned_cols=68 Identities=13% Similarity=0.193 Sum_probs=36.8
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHH
Q 001374 806 FSLEEFEELKLEKDNLATDLARCTENLEMTKSQLYETEQ--LLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETH 880 (1091)
Q Consensus 806 ~s~EelEqLEsEkeelE~eLee~~eklEel~~qLqelE~--~LeELesQLesLqeS~selEeqLk~~~e~ledLesr 880 (1091)
.+.+++..|..++..++..++.+++.+.-....|+.+.. .+++++..+..|.+ .+..+.++++.+.+-
T Consensus 76 ~~~eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~k-------ev~~~~erl~~~k~g 145 (201)
T KOG4603|consen 76 VSDEELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKK-------EVAGYRERLKNIKAG 145 (201)
T ss_pred CChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH-------HHHHHHHHHHHHHHh
Confidence 455677777766666666666666555555555555542 23445555555544 555554444444333
No 367
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=59.09 E-value=6.6e+02 Score=34.80 Aligned_cols=172 Identities=18% Similarity=0.202 Sum_probs=98.4
Q ss_pred HHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 140 AEDRAAHLDGALKECMRQIRNLKEEHEQKLQDFVLTKTKQWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNML 219 (1091)
Q Consensus 140 le~rv~hLd~aLKec~~qLr~~reeqeqki~~~~~~~~~e~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLEelqeeI 219 (1091)
+..++.+|++-.+.|+.|+...+..=. .-++..-..+..-+...+..+.........+...+..+..+.
T Consensus 266 ~~~~~~~l~~e~~~l~~~~~~l~~~i~-----------~~~~~t~~~l~~~~~n~~~~~~~~~~~~~~~e~~~~~l~~e~ 334 (1294)
T KOG0962|consen 266 LLKQVKLLDSEHKNLKKQISRLREKIL-----------KIFDGTDEELGELLSNFEERLEEMGEKLRELEREISDLNEER 334 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc-----------cccccchHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 344555666666666666555544211 112222223334444444455555555555555555555566
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 001374 220 IKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSK------------ELEIRNEEKNMSMRSAEAANKQHMEGVK 287 (1091)
Q Consensus 220 ~EL~eeiErlEgEi~LLkERIenlEKEne~LK~EL~~Lqe------------ELEiL~EElE~s~qsaeal~KQ~lEl~K 287 (1091)
..+...+.++.+++..++.+....+.....+...+..+.- ..+.+..-.+.....+......+....+
T Consensus 335 ~~l~~~k~~~~~~~~~lq~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~i~~~~~~~~~~~~q~~k 414 (1294)
T KOG0962|consen 335 SSLIQLKTELDLEQSELQAEAEFHQELKRQRDSLIQELAHQYQLDSVESLEFMAEVKKDFRNLILERFGGLEDDIKQRKK 414 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 6666666666666666666666655544444333321111 3333333344455556677778888888
Q ss_pred HHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHhh
Q 001374 288 KIAKLEAECQRLRGLVRKKLPGPAALAQMKMEVES 322 (1091)
Q Consensus 288 KLaKLEaEcqrLr~l~rk~lpgpaa~a~mk~ev~~ 322 (1091)
.++.++.....++.-++++--+--+.-.|+.+...
T Consensus 415 ~~~~~~s~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 449 (1294)
T KOG0962|consen 415 DIAELETNALDLIKEITDREVSLEAQKRIKDEIKK 449 (1294)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888777766677777776654
No 368
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=59.04 E-value=2.8e+02 Score=30.53 Aligned_cols=34 Identities=24% Similarity=0.360 Sum_probs=20.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 178 KQWDKIRLEFEAKIANFEQELLRSAAENATLSRS 211 (1091)
Q Consensus 178 ~e~e~~~~ELEaKLaElEkeLeelkaEl~aLeeq 211 (1091)
..|-.-...|+..+..+++.+..++.++..+...
T Consensus 132 naW~~~n~~Le~~~~~le~~l~~~k~~ie~vN~~ 165 (221)
T PF05700_consen 132 NAWLIHNEQLEAMLKRLEKELAKLKKEIEEVNRE 165 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466555666666666666666666665555543
No 369
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=58.95 E-value=2.6e+02 Score=33.84 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 812 EELKLEKDNLATDLARCTENLEMTKS 837 (1091)
Q Consensus 812 EqLEsEkeelE~eLee~~eklEel~~ 837 (1091)
..+..++.++......+...++.++.
T Consensus 215 ~~~~~el~eik~~~~~L~~~~e~Lk~ 240 (395)
T PF10267_consen 215 QKILEELREIKESQSRLEESIEKLKE 240 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444
No 370
>KOG3809 consensus Microtubule-binding protein MIP-T3 [Cytoskeleton]
Probab=58.61 E-value=1.5e+02 Score=35.97 Aligned_cols=40 Identities=25% Similarity=0.229 Sum_probs=29.3
Q ss_pred HHHHHHhHHHHhhhhhhHHHHHhhhhHHHHHHHHHHHhhh
Q 001374 123 ALALKNHLESVTLSKLTAEDRAAHLDGALKECMRQIRNLK 162 (1091)
Q Consensus 123 ~~~lK~~Le~~~~q~~~le~rv~hLd~aLKec~~qLr~~r 162 (1091)
++.-|+.++...++.---+-.......|.++.|.|||..-
T Consensus 449 IlETkke~e~~g~~~~p~e~~a~~~~sa~~~~~~~lr~~~ 488 (583)
T KOG3809|consen 449 ILETKKEIEDGGGQDQPEESDADKIMSAEREKMKQLREKL 488 (583)
T ss_pred HHHHHHHHHhcCCCCCCChhhhhhHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777778888888888777543
No 371
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=58.58 E-value=1.5e+02 Score=27.77 Aligned_cols=27 Identities=22% Similarity=0.362 Sum_probs=21.1
Q ss_pred HHHHhhhhHHHHHHHHHHHhhhHHHHH
Q 001374 141 EDRAAHLDGALKECMRQIRNLKEEHEQ 167 (1091)
Q Consensus 141 e~rv~hLd~aLKec~~qLr~~reeqeq 167 (1091)
+.=+.+|..+|..|..+++.++.-|..
T Consensus 6 ~Gl~~~l~P~l~~~~~~l~el~~sQ~~ 32 (92)
T PF14712_consen 6 EGLLSLLEPDLDRLDQQLQELRQSQEE 32 (92)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 345677888888888888888888874
No 372
>PRK02793 phi X174 lysis protein; Provisional
Probab=58.26 E-value=61 Score=29.86 Aligned_cols=47 Identities=13% Similarity=0.128 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 001374 196 QELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQ 242 (1091)
Q Consensus 196 keLeelkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIen 242 (1091)
.++..+...+.-++..++.+++.+.+....+.++..++..+.+|+..
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444445555555555555555555555555555444443
No 373
>COG4487 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.23 E-value=4.3e+02 Score=32.37 Aligned_cols=152 Identities=20% Similarity=0.208 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhh-HHHHHHHHHHHHhHHHHHHHHHHHHH--HH-HHHHHH
Q 001374 820 NLATDLARCTENLEMTKSQLYETEQ-LLAEVKAQLASAQKSN-SLAETQLKCMAESYRSLETHAQELEA--EV-NLLRAK 894 (1091)
Q Consensus 820 elE~eLee~~eklEel~~qLqelE~-~LeELesQLesLqeS~-selEeqLk~~~e~ledLesrL~eLea--El-keLqeK 894 (1091)
.+-+.+...+.+......+...... .+..++.++...+... ...++++.... -.+..+...++. .+ .....+
T Consensus 39 ~~l~~~ee~e~~~~~~~A~~~~~~kkel~~~~~q~~~~k~~~~~~~~eqi~~~~---~~~q~e~~~~~~~~~~N~e~dke 115 (438)
T COG4487 39 RILNTLEEFEKEANEKRAQYRSAKKKELSQLEEQLINQKKEQKNLFNEQIKQFE---LALQDEIAKLEALELLNLEKDKE 115 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhHHhhHH
Confidence 3344445555555554444444443 6666666666665422 23444554443 222233333332 21 233455
Q ss_pred HHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHhhhh-------hhcccchhHhh-hhhhHHHHHHH--HHHHHHHHHHHHH
Q 001374 895 IESLENELQDEKMSHHN-AMAKCKELEEQLQRNEN-------CAVCSSEADEN-KIKQDRDLAAA--AERLAECQETILL 963 (1091)
Q Consensus 895 VesLE~ELe~ek~~~eE-leaK~~eLEeQLe~~~~-------~~lk~q~dkdL-KikqEkEIaaA--eeKLAEcQeTI~s 963 (1091)
+..|+.++.....++.+ +..++..++.+.+.... ...+.+.+.++ +.+.+.++..+ .-++++.++.+.+
T Consensus 116 ~~~le~~L~~~~~e~~~~lq~~~e~~~kkre~~k~~~~l~~~~ekK~e~sLe~eR~k~~~ql~~~~~~~e~~e~~e~~~s 195 (438)
T COG4487 116 LELLEKELDELSKELQKQLQNTAEIIEKKRENNKNEERLKFENEKKLEESLELEREKFEEQLHEANLDLEFKENEEQRES 195 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 55566666555555554 44444444433333222 00111111111 33343344433 3456666666666
Q ss_pred HHHHHHhhcCC
Q 001374 964 LGKQLKSLRPQ 974 (1091)
Q Consensus 964 LEKQLKsLa~q 974 (1091)
....++.+.+.
T Consensus 196 ~~~~~k~~k~~ 206 (438)
T COG4487 196 KWAILKKLKRR 206 (438)
T ss_pred HHHHHHHHHHH
Confidence 66666555443
No 374
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=57.91 E-value=2.8e+02 Score=31.94 Aligned_cols=64 Identities=16% Similarity=0.230 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 001374 196 QELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSK 259 (1091)
Q Consensus 196 keLeelkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIenlEKEne~LK~EL~~Lqe 259 (1091)
+.+..++.+..++.+.....-+.|..+.+.+++.+.+..-+..|.+.++.+..+++.++.-+-.
T Consensus 9 a~iae~k~e~sAlhqK~~aKtdairiL~QdLEkfe~Ekd~~a~~aETLeln~ealere~eLlaa 72 (389)
T KOG4687|consen 9 AEIAELKKEFSALHQKCGAKTDAIRILGQDLEKFENEKDGLAARAETLELNLEALERELELLAA 72 (389)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHh
Confidence 4566778888888888888889999999999999999999999999999999999988876544
No 375
>PF15556 Zwint: ZW10 interactor
Probab=57.86 E-value=3e+02 Score=30.47 Aligned_cols=142 Identities=15% Similarity=0.179 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 001374 166 EQKLQDFVLTKTKQWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCER 245 (1091)
Q Consensus 166 eqki~~~~~~~~~e~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIenlEK 245 (1091)
+|++.+| +.+|..+++.+...++-+..-+-..-. .+++.+.....|.+.++++.+...+..+++....+
T Consensus 58 Rqkai~a----KeQWKeLKAtYqehVEaIk~alt~aL~-------q~eEaqrK~~qLqeA~eqlqaKKqva~eK~r~AQk 126 (252)
T PF15556_consen 58 RQKAIEA----KEQWKELKATYQEHVEAIKSALTQALP-------QVEEAQRKRTQLQEALEQLQAKKQVAMEKLRAAQK 126 (252)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455444 789999999999888777555444433 34445555556666666666666666666655544
Q ss_pred HHHH--------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCChHHHHHHH
Q 001374 246 EINS--------AKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLVRKKLPGPAALAQMK 317 (1091)
Q Consensus 246 Ene~--------LK~EL~~LqeELEiL~EElE~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l~rk~lpgpaa~a~mk 317 (1091)
...- |..--..+.++..--..+++.+.+.+..+..+.-.-..|+.+.+.-++-+-.|- -+++-|.|=+...
T Consensus 127 qwqlqQeK~LQ~Lae~sAEvrerq~~~qqeLe~l~qeL~~lkqQa~qeqdKLQR~qtfLqLl~tLq-~k~~~~eae~e~~ 205 (252)
T PF15556_consen 127 QWQLQQEKHLQHLAEVSAEVRERQTGTQQELERLYQELGTLKQQAGQEQDKLQRHQTFLQLLYTLQ-GKLLFPEAEAELP 205 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCCCCcccccch
Confidence 3321 111111222222333445555555556666666666666666666666555554 4455565544444
Q ss_pred HH
Q 001374 318 ME 319 (1091)
Q Consensus 318 ~e 319 (1091)
.|
T Consensus 206 ~~ 207 (252)
T PF15556_consen 206 QE 207 (252)
T ss_pred hh
Confidence 33
No 376
>PF15294 Leu_zip: Leucine zipper
Probab=57.85 E-value=2.3e+02 Score=32.62 Aligned_cols=45 Identities=27% Similarity=0.345 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001374 194 FEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKG 238 (1091)
Q Consensus 194 lEkeLeelkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkE 238 (1091)
+..++.+++.+|..+...+...+......-++..+++.+++-++-
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666677777666666666666666666666666665554
No 377
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=56.90 E-value=2.6e+02 Score=29.37 Aligned_cols=35 Identities=6% Similarity=0.106 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 193 NFEQELLRSAAENATLSRSLQERSNMLIKISEEKS 227 (1091)
Q Consensus 193 ElEkeLeelkaEl~aLeeqLEelqeeI~EL~eeiE 227 (1091)
++..++.-+..++..+..++..++..+.++...++
T Consensus 10 ~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~ 44 (145)
T COG1730 10 ELAAQLQILQSQIESLQAQIAALNAAISELQTAIE 44 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444443333
No 378
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=56.81 E-value=1.4e+02 Score=35.19 Aligned_cols=105 Identities=27% Similarity=0.263 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhcc-cchhHhhhh
Q 001374 863 AETQLKCMAESYRSLETHAQELEAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNENCAVC-SSEADENKI 941 (1091)
Q Consensus 863 lEeqLk~~~e~ledLesrL~eLeaElkeLqeKVesLE~ELe~ek~~~eEleaK~~eLEeQLe~~~~~~lk-~q~dkdLKi 941 (1091)
.++++..+....+.+..+-.+++.-...|...++.|++++..++..+.=+..+.++..++++...-.... .-....--.
T Consensus 223 ~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~n~~~~~~D~~~~~~~~l~ 302 (365)
T KOG2391|consen 223 REEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAENLEALDIDEAIECTAPLY 302 (365)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccCcCCCchhhhhccchHH
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001374 942 KQDRDLAAAAERLAECQETILLLGKQLKS 970 (1091)
Q Consensus 942 kqEkEIaaAeeKLAEcQeTI~sLEKQLKs 970 (1091)
+| .+...+..+| |+.+|-.|++-++.
T Consensus 303 kq--~l~~~A~d~a-ieD~i~~L~~~~r~ 328 (365)
T KOG2391|consen 303 KQ--ILECYALDLA-IEDAIYSLGKSLRD 328 (365)
T ss_pred HH--HHHhhhhhhH-HHHHHHHHHHHHhc
No 379
>PRK02793 phi X174 lysis protein; Provisional
Probab=56.54 E-value=65 Score=29.68 Aligned_cols=51 Identities=24% Similarity=0.333 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhh
Q 001374 877 LETHAQELEAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNE 927 (1091)
Q Consensus 877 LesrL~eLeaElkeLqeKVesLE~ELe~ek~~~eEleaK~~eLEeQLe~~~ 927 (1091)
++.|+..|+.++.-+..-|+.|...+-.-...+..+..+++.|..+|..+.
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 56 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445556666666666666666666666666666666666666666666544
No 380
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=56.44 E-value=1.2e+02 Score=33.65 Aligned_cols=59 Identities=22% Similarity=0.255 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001374 243 CEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRG 301 (1091)
Q Consensus 243 lEKEne~LK~EL~~LqeELEiL~EElE~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~ 301 (1091)
++.++..++.++..+..+++....+++..+...+++.+|..++......|-++.+.++.
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~ 207 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQE 207 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 45566677777777777777777777777777777777777777777777777666654
No 381
>PF15456 Uds1: Up-regulated During Septation
Probab=56.12 E-value=1.1e+02 Score=31.18 Aligned_cols=86 Identities=20% Similarity=0.286 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhcc-cchhHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 001374 886 AEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNENCAVC-SSEADENKIKQDRDLAAAAERLAECQETILLL 964 (1091)
Q Consensus 886 aElkeLqeKVesLE~ELe~ek~~~eEleaK~~eLEeQLe~~~~~~lk-~q~dkdLKikqEkEIaaAeeKLAEcQeTI~sL 964 (1091)
.+|..+..++..|..-+++.+..+. ++.++.+.-..|.+....... .....+-..+++.+++.+..++.+....+..+
T Consensus 22 eEVe~LKkEl~~L~~R~~~lr~kl~-le~k~RdAa~sl~~l~~~~~~~~~~~~~~~~~~eeel~~~~rk~ee~~~eL~~l 100 (124)
T PF15456_consen 22 EEVEELKKELRSLDSRLEYLRRKLA-LESKIRDAAHSLSRLYSSSSRRARFSRESSLKAEEELAESDRKCEELAQELWKL 100 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5677777777777777777887777 888888888888776541111 11111223456678888888888888888888
Q ss_pred HHHHHhhc
Q 001374 965 GKQLKSLR 972 (1091)
Q Consensus 965 EKQLKsLa 972 (1091)
++.+...+
T Consensus 101 e~R~~~~~ 108 (124)
T PF15456_consen 101 ENRLAEVR 108 (124)
T ss_pred HHHHHHHH
Confidence 88876654
No 382
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=55.99 E-value=5.9e+02 Score=33.26 Aligned_cols=60 Identities=17% Similarity=0.156 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCChHHH
Q 001374 254 LHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLVRKKLPGPAAL 313 (1091)
Q Consensus 254 L~~LqeELEiL~EElE~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l~rk~lpgpaa~ 313 (1091)
-..+...|-.-...+.+..+.+.-...+...+.+++.++|..+..++.+|--.-.|--++
T Consensus 1061 RDELh~~Lst~RsRr~~~EkqlT~~E~E~~~L~~~~rK~ErDY~~~Re~VV~AK~~WC~V 1120 (1480)
T COG3096 1061 RDELHAQLSTNRSRRNQLEKQLTFCEAEMDNLTRKLRKLERDYFEMREQVVTAKAGWCAV 1120 (1480)
T ss_pred HHHHHHHHhccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhh
Confidence 334445555555667777788888888888888999999999988888876555554444
No 383
>PRK04406 hypothetical protein; Provisional
Probab=55.92 E-value=83 Score=29.31 Aligned_cols=35 Identities=14% Similarity=0.052 Sum_probs=15.9
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 231 AEIELLKGNIEQCEREINSAKYELHIVSKELEIRN 265 (1091)
Q Consensus 231 gEi~LLkERIenlEKEne~LK~EL~~LqeELEiL~ 265 (1091)
.++..|+.|+.+.+..++.|...+..++++++.+.
T Consensus 11 ~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~ 45 (75)
T PRK04406 11 ERINDLECQLAFQEQTIEELNDALSQQQLLITKMQ 45 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444443333
No 384
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=55.91 E-value=2.4e+02 Score=29.21 Aligned_cols=44 Identities=20% Similarity=0.265 Sum_probs=31.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCC
Q 001374 265 NEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLVRKKLP 308 (1091)
Q Consensus 265 ~EElE~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l~rk~lp 308 (1091)
+.....+......+......-.+.|.+|..|-..++.-....||
T Consensus 60 ~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~lR~Wa~t~LP 103 (135)
T TIGR03495 60 EEAQAQLRQQLAQARALLAQREQRIERLKRENEDLRRWADTPLP 103 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHhcCCCc
Confidence 33444444555666666677777888888888999999988887
No 385
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=55.32 E-value=3.5e+02 Score=31.00 Aligned_cols=8 Identities=0% Similarity=-0.682 Sum_probs=4.0
Q ss_pred hhhhhcCC
Q 001374 731 LRINVMGY 738 (1091)
Q Consensus 731 ~~~~~~~~ 738 (1091)
++|.+.+.
T Consensus 20 ~~~~~~~~ 27 (331)
T PRK03598 20 GGWWWYQS 27 (331)
T ss_pred HheeEeee
Confidence 45555553
No 386
>PRK00736 hypothetical protein; Provisional
Probab=55.12 E-value=71 Score=29.14 Aligned_cols=40 Identities=15% Similarity=0.168 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 001374 202 AAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIE 241 (1091)
Q Consensus 202 kaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIe 241 (1091)
...+.-++..++.++..+......+..+..++..+.+|+.
T Consensus 11 E~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~ 50 (68)
T PRK00736 11 EIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFL 50 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444443
No 387
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=54.92 E-value=5.8e+02 Score=32.91 Aligned_cols=138 Identities=14% Similarity=0.112 Sum_probs=62.2
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 001374 167 QKLQDFVLTKTKQWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCERE 246 (1091)
Q Consensus 167 qki~~~~~~~~~e~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIenlEKE 246 (1091)
+-+.++...+-.+....+..|...|+..++++..+-..+.............-.-|.+.+..+.-.+..+..+...-.++
T Consensus 46 ~e~~~~y~~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~tLke~l~~l~~~le~lr~qk~eR~~e 125 (660)
T KOG4302|consen 46 QECLEIYKRKVEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGEISDKIEGTLKEQLESLKPYLEGLRKQKDERRAE 125 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555556666666666666666555444433222211000000022233333333333333333333333
Q ss_pred HHHHHHHHHHHHHHHHH---------------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 001374 247 INSAKYELHIVSKELEI---------------RNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLVR 304 (1091)
Q Consensus 247 ne~LK~EL~~LqeELEi---------------L~EElE~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l~r 304 (1091)
...+..++..+-.++.- -.++++..+..+..++++...-.+++..+..++..+-..+-
T Consensus 126 f~el~~qie~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~~l~~~Lg 198 (660)
T KOG4302|consen 126 FKELYHQIEKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQKEKSDRLEKVLELKEEIKSLCSVLG 198 (660)
T ss_pred HHHHHHHHHHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33333333333332221 12455555566666666666666666666666655555543
No 388
>PRK00736 hypothetical protein; Provisional
Probab=54.66 E-value=66 Score=29.31 Aligned_cols=49 Identities=24% Similarity=0.260 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhh
Q 001374 879 THAQELEAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNE 927 (1091)
Q Consensus 879 srL~eLeaElkeLqeKVesLE~ELe~ek~~~eEleaK~~eLEeQLe~~~ 927 (1091)
.++..|+.++.-+..-|+.|...+-.-...+..+..+|..|.++|....
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455555555555555555555555555555555555666666555443
No 389
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=54.62 E-value=1.1e+02 Score=28.58 Aligned_cols=71 Identities=25% Similarity=0.265 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 001374 839 LYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVNLLRAKIESLENELQDEKMSHHNAMAK 915 (1091)
Q Consensus 839 LqelE~~LeELesQLesLqeS~selEeqLk~~~e~ledLesrL~eLeaElkeLqeKVesLE~ELe~ek~~~eEleaK 915 (1091)
+++.+..|..|+.+--.|+..+.-++..+.... ......+..+..++...+..|..++...+..+.++...
T Consensus 2 lrEqe~~i~~L~KENF~LKLrI~fLee~l~~~~------~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~~ 72 (75)
T PF07989_consen 2 LREQEEQIDKLKKENFNLKLRIYFLEERLQKLG------PESIEELLKENIELKVEVESLKRELQEKKKLLKEAEKA 72 (75)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcc------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567778888888888888887777777776331 12222233444444445555555555555555554443
No 390
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=54.34 E-value=3.1e+02 Score=29.62 Aligned_cols=102 Identities=18% Similarity=0.177 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 001374 825 LARCTENLEMTKSQLYETEQLLAEVKAQLASAQKS-NSLAETQLKCMAESYRSLETHAQELEAEVNLLRAKIES-LENEL 902 (1091)
Q Consensus 825 Lee~~eklEel~~qLqelE~~LeELesQLesLqeS-~selEeqLk~~~e~ledLesrL~eLeaElkeLqeKVes-LE~EL 902 (1091)
|..+.+.+..+.+.+..+-...-..........+. +..++.++..+...+..+..++..+......+..+... ...+.
T Consensus 86 L~rvrde~~~~l~~y~~l~~s~~~f~~rk~l~~e~~~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~ 165 (189)
T PF10211_consen 86 LLRVRDEYRMTLDAYQTLYESSIAFGMRKALQAEQGKQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEE 165 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHhh
Q 001374 903 QDEKMSHHNAMAKCKELEEQLQRN 926 (1091)
Q Consensus 903 e~ek~~~eEleaK~~eLEeQLe~~ 926 (1091)
..-...+.-+......|..+|+++
T Consensus 166 k~~~~ei~~lk~~~~ql~~~l~~~ 189 (189)
T PF10211_consen 166 KKHQEEIDFLKKQNQQLKAQLEQI 189 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
No 391
>PRK00846 hypothetical protein; Provisional
Probab=54.14 E-value=80 Score=29.74 Aligned_cols=48 Identities=15% Similarity=0.125 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 001374 196 QELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQC 243 (1091)
Q Consensus 196 keLeelkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIenl 243 (1091)
.++..+...+.-.+..++.++..+......+.++..++..+.+|+...
T Consensus 13 ~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~ 60 (77)
T PRK00846 13 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 60 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444445555555544444444444444444444433
No 392
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=54.11 E-value=1.6e+02 Score=27.32 Aligned_cols=54 Identities=19% Similarity=0.247 Sum_probs=39.9
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 169 LQDFVLTKTKQWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKI 222 (1091)
Q Consensus 169 i~~~~~~~~~e~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLEelqeeI~EL 222 (1091)
++....+.-++|++.-..++........+...+.+.++.|..+++.+...+..+
T Consensus 15 Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rL 68 (70)
T PF04899_consen 15 LQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLERL 68 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344556677889998888888888888887777777777777777666555443
No 393
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=53.96 E-value=4e+02 Score=30.67 Aligned_cols=14 Identities=29% Similarity=0.247 Sum_probs=5.8
Q ss_pred hHHHHHhhhhHHHH
Q 001374 139 TAEDRAAHLDGALK 152 (1091)
Q Consensus 139 ~le~rv~hLd~aLK 152 (1091)
.+=++-+.|=++|.
T Consensus 128 eit~~GA~LydlL~ 141 (267)
T PF10234_consen 128 EITQRGASLYDLLG 141 (267)
T ss_pred HHHHHHHHHHHHHh
Confidence 33344444444443
No 394
>PRK04325 hypothetical protein; Provisional
Probab=53.95 E-value=78 Score=29.33 Aligned_cols=39 Identities=10% Similarity=0.099 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 001374 202 AAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNI 240 (1091)
Q Consensus 202 kaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERI 240 (1091)
...+.-++..++.++..+.+....+.++..++..+.+|+
T Consensus 15 E~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl 53 (74)
T PRK04325 15 EIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQM 53 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444444444333
No 395
>PF14992 TMCO5: TMCO5 family
Probab=53.78 E-value=4.1e+02 Score=30.78 Aligned_cols=22 Identities=36% Similarity=0.590 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCC
Q 001374 952 ERLAECQETILLLGKQLKSLRPQ 974 (1091)
Q Consensus 952 eKLAEcQeTI~sLEKQLKsLa~q 974 (1091)
.++.+ .+.+.-|++.+......
T Consensus 161 ~rmE~-ekE~~lLe~el~k~q~~ 182 (280)
T PF14992_consen 161 RRMEE-EKEMLLLEKELSKYQMQ 182 (280)
T ss_pred HHHHH-HHHHHHHHHHHHHHhch
Confidence 55555 44566677777666554
No 396
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=53.77 E-value=2e+02 Score=27.20 Aligned_cols=52 Identities=17% Similarity=0.199 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhh
Q 001374 873 SYRSLETHAQELEAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNE 927 (1091)
Q Consensus 873 ~ledLesrL~eLeaElkeLqeKVesLE~ELe~ek~~~eEleaK~~eLEeQLe~~~ 927 (1091)
..++.+..++..-.|+..++++|..|+..-...+.. ++..|..|..+|+..+
T Consensus 26 ~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~---YEeEI~rLr~eLe~r~ 77 (79)
T PF08581_consen 26 QKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQ---YEEEIARLRRELEQRG 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHCHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhC
Confidence 344444445555556666666666665555554433 3556666666666544
No 397
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=53.73 E-value=6.3e+02 Score=32.99 Aligned_cols=180 Identities=19% Similarity=0.271 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHH-----hhhhhhHHHHHhhhhH-------------HHHHHHHHHH----hhhHHHHHHHHHHHHHHh
Q 001374 120 EAEALALKNHLESV-----TLSKLTAEDRAAHLDG-------------ALKECMRQIR----NLKEEHEQKLQDFVLTKT 177 (1091)
Q Consensus 120 e~e~~~lK~~Le~~-----~~q~~~le~rv~hLd~-------------aLKec~~qLr----~~reeqeqki~~~~~~~~ 177 (1091)
|.|+..||+|+=.+ ..-...|.+.+..|-. .||+...=|| .+ .-+.|-+|-++..+
T Consensus 435 e~elekLk~eilKAk~s~~~~~~~~L~e~IeKLk~E~d~e~S~A~~~~gLk~kL~~Lr~E~sKa-~~~~~~~~~~L~eK- 512 (762)
T PLN03229 435 EGEVEKLKEQILKAKESSSKPSELALNEMIEKLKKEIDLEYTEAVIAMGLQERLENLREEFSKA-NSQDQLMHPVLMEK- 512 (762)
T ss_pred HHHHHHHHHHHHhcccccCCCCChHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhc-ccccccccHHHHHH-
Q ss_pred hhHHHHHHHHHHHHHH------HHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q 001374 178 KQWDKIRLEFEAKIAN------FEQELLRSAAENA------------TLSRSLQERSNMLIKISEEKSQAEAEIE----- 234 (1091)
Q Consensus 178 ~e~e~~~~ELEaKLaE------lEkeLeelkaEl~------------aLeeqLEelqeeI~EL~eeiErlEgEi~----- 234 (1091)
-++++.++..++.+ +..+++.+++... .|...+.+.-.++++--+-+++.+....
T Consensus 513 --~~kLk~Efnkkl~ea~n~p~lk~Kle~Lk~~~~~~~~s~g~~~a~~Lk~ei~kki~e~~~~~~~kek~ea~~aev~~~ 590 (762)
T PLN03229 513 --IEKLKDEFNKRLSRAPNYLSLKYKLDMLNEFSRAKALSEKKSKAEKLKAEINKKFKEVMDRPEIKEKMEALKAEVASS 590 (762)
T ss_pred --HHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhhhhcccchhhhhhhHHHHHHHHHhcccHHHHHHHHHHHHHHHhc
Q ss_pred ----------HHHhhHHHHHHHHH-------------------------------HHHHHHHHHHHHHHHHHHHHHHhHH
Q 001374 235 ----------LLKGNIEQCEREIN-------------------------------SAKYELHIVSKELEIRNEEKNMSMR 273 (1091)
Q Consensus 235 ----------LLkERIenlEKEne-------------------------------~LK~EL~~LqeELEiL~EElE~s~q 273 (1091)
.+++++..+.++++ .++..|..++++ ++++++....
T Consensus 591 g~s~~~~~~~~lkeki~~~~~Ei~~eie~v~~S~gL~~~~~~k~e~a~~~~~p~~~~k~KIe~L~~e---IkkkIe~av~ 667 (762)
T PLN03229 591 GASSGDELDDDLKEKVEKMKKEIELELAGVLKSMGLEVIGVTKKNKDTAEQTPPPNLQEKIESLNEE---INKKIERVIR 667 (762)
T ss_pred CccccCCCCHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhhhhhhcccccCCChhhHHHHHHHHHH---HHHHHHHHhc
Q ss_pred HHHHHHHHHHHHHHHHHHHH--------HHHHHHhhhhhccC
Q 001374 274 SAEAANKQHMEGVKKIAKLE--------AECQRLRGLVRKKL 307 (1091)
Q Consensus 274 saeal~KQ~lEl~KKLaKLE--------aEcqrLr~l~rk~l 307 (1091)
+ -.+...+.++..++++.- +.+..|..-++.++
T Consensus 668 s-s~LK~k~E~Lk~Evaka~~~pd~~~k~kieal~~qik~~~ 708 (762)
T PLN03229 668 S-SDLKSKIELLKLEVAKASKTPDVTEKEKIEALEQQIKQKI 708 (762)
T ss_pred c-hhHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHH
No 398
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.44 E-value=5.6e+02 Score=32.27 Aligned_cols=190 Identities=18% Similarity=0.192 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 185 LEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIR 264 (1091)
Q Consensus 185 ~ELEaKLaElEkeLeelkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIenlEKEne~LK~EL~~LqeELEiL 264 (1091)
.+...+|+..++++..++..++.+...+-+....+..+.+....+.+-+.-+..++..++--++.-++++......|..-
T Consensus 327 rE~~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkA 406 (654)
T KOG4809|consen 327 RERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKA 406 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666666666666666666655555555555455555544444444444444443333222
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHhhhcCCcCCccccCCCCCCCCCCC
Q 001374 265 NEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLVRKKLPGPAALAQMKMEVESLGRDYGDSRLKRSPVKPTSPHL 344 (1091)
Q Consensus 265 ~EElE~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l~rk~lpgpaa~a~mk~ev~~l~~~~~~~r~rr~~~~~~~~~~ 344 (1091)
-.-.+..+-. -....++..+.+.+..++.+|....++|-.-| -+--||+.+-+|. +.+. . ...++
T Consensus 407 h~~~ddar~~-pe~~d~i~~le~e~~~y~de~~kaqaevdrlL-------eilkeveneKnDk-dkki----a-eler~- 471 (654)
T KOG4809|consen 407 HNIEDDARMN-PEFADQIKQLEKEASYYRDECGKAQAEVDRLL-------EILKEVENEKNDK-DKKI----A-ELERH- 471 (654)
T ss_pred HHhhHhhhcC-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhhccc-cchh----h-hcCch-
Confidence 2211111111 22345666777788888888888888887755 3445677666653 1111 0 00011
Q ss_pred CCCcccchhhhHhhhhhhHHHHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 001374 345 SPVSEFSLDNVQKFQKENEFLTERLLAMEEETKMLKEALAKRNSELQASRNLCA 398 (1091)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~l~~rl~~~eee~k~lke~l~~k~~elq~sr~~~a 398 (1091)
. .....+-.+..-.|....++-..+|-++=+++++=+..++-..+
T Consensus 472 ---~------kdqnkkvaNlkHk~q~Ekkk~aq~lee~rrred~~~d~sqhlq~ 516 (654)
T KOG4809|consen 472 ---M------KDQNKKVANLKHKQQLEKKKNAQLLEEVRRREDSMADNSQHLQI 516 (654)
T ss_pred ---h------hhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHH
Confidence 0 01112233445566666677777777777777766665555543
No 399
>COG4694 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.38 E-value=5.2e+02 Score=32.72 Aligned_cols=65 Identities=18% Similarity=0.275 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhh
Q 001374 863 AETQLKCMAESYRSLETHAQELEAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNEN 928 (1091)
Q Consensus 863 lEeqLk~~~e~ledLesrL~eLeaElkeLqeKVesLE~ELe~ek~~~eEleaK~~eLEeQLe~~~~ 928 (1091)
..+.+.... .|-.++..++.|+.+++..+..|+.|.+++..+.+.+-...-=++++++-|.+.-+
T Consensus 437 ~~~~VQe~~-~Y~g~ekk~n~LE~e~kn~~~ev~kls~ei~~ie~~l~~~~~~vke~nq~l~~g~g 501 (758)
T COG4694 437 FKSDVQEYN-KYCGLEKKINNLEKEIKNNQEEVKKLSNEIKEIEKFLVSIKPIVKEINQTLLKGYG 501 (758)
T ss_pred HHHHHHHHH-HHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHhhcc
Confidence 355666666 78889999999999999999999999999999999999888889999988887555
No 400
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=53.37 E-value=3.1e+02 Score=29.21 Aligned_cols=106 Identities=15% Similarity=0.209 Sum_probs=61.4
Q ss_pred hHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHHHHH-----------HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 139 TAEDRAAHLDGALKECMRQIRNLKEEHEQKLQDFVL-----------TKTKQWDKIRLEFEAKIANFEQELLRSAAENAT 207 (1091)
Q Consensus 139 ~le~rv~hLd~aLKec~~qLr~~reeqeqki~~~~~-----------~~~~e~e~~~~ELEaKLaElEkeLeelkaEl~a 207 (1091)
++...+.+.+.+|.+|-.+.+..++.-. ...+.|. ..-..|+..+..+..++..++.++ ..
T Consensus 26 ~~r~al~~~~a~~~~~~a~v~~~~~~l~-~~~~ri~~m~~gg~~f~i~~~~~~~~~r~~l~~~~~~~e~~~-------a~ 97 (158)
T PF09486_consen 26 AQRRALAAAEAELAEQQAEVEAARQRLR-AHDARIDAMMTGGAPFSIDEYLALRRYRDVLEERVRAAEAEL-------AA 97 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH-------HH
Confidence 3444455555555555555544443322 1122221 233456666666666666555554 44
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 001374 208 LSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKY 252 (1091)
Q Consensus 208 LeeqLEelqeeI~EL~eeiErlEgEi~LLkERIenlEKEne~LK~ 252 (1091)
+...++.....|......|.++.+.+.+..+|+..+..-...-..
T Consensus 98 l~~~l~~~~~~ia~~~raIarn~a~id~~~er~~~l~r~~ea~~e 142 (158)
T PF09486_consen 98 LRQALRAAEDEIAATRRAIARNDARIDVCRERIDRLRRAAEAAAE 142 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhHH
Confidence 555566666777777778888888888888888877766554443
No 401
>PRK04325 hypothetical protein; Provisional
Probab=53.16 E-value=67 Score=29.77 Aligned_cols=47 Identities=19% Similarity=0.173 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 812 EELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQK 858 (1091)
Q Consensus 812 EqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqe 858 (1091)
..++..+.+++.++..-.+.++.+...+-.....|..|+.++..+..
T Consensus 5 ~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~ 51 (74)
T PRK04325 5 QEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQ 51 (74)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666677777777777777777776666666666666666666655
No 402
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=53.16 E-value=3.4e+02 Score=29.72 Aligned_cols=16 Identities=25% Similarity=0.331 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 001374 221 KISEEKSQAEAEIELL 236 (1091)
Q Consensus 221 EL~eeiErlEgEi~LL 236 (1091)
.+..++.........+
T Consensus 124 ~L~~ki~~~k~k~~~l 139 (219)
T TIGR02977 124 KLQAKLAEARARQKAL 139 (219)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 403
>KOG2008 consensus BTK-associated SH3-domain binding protein SAB [Signal transduction mechanisms]
Probab=53.10 E-value=4.4e+02 Score=30.97 Aligned_cols=84 Identities=19% Similarity=0.190 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHhhhhcchh-hHHHHhhHHHHHHHhhhhHHH------HHHH-------HHHHHhHHHHhhhhhhHH
Q 001374 76 TMEEQIKELNEKLSAANSEISAK-EDLVKQHTKVAEEAVSGWEKA------EAEA-------LALKNHLESVTLSKLTAE 141 (1091)
Q Consensus 76 ~~~~~~k~l~ekls~a~~~~~~k-d~lvkqh~kvaeeav~gweka------e~e~-------~~lK~~Le~~~~q~~~le 141 (1091)
..+-.|.....|.-.++...+.| +.||||.+|-.+-+-.=||=- .-|+ .--+.-|..|..|+.-++
T Consensus 31 ~~E~~Le~ar~~Fretqv~~t~kl~el~Kk~~k~I~ksrpf~elk~~er~~r~e~QkAa~~FeRat~vl~~AkeqVsl~~ 110 (426)
T KOG2008|consen 31 RRETELEDARQKFRETQVEATVKLDELVKKIGKAIEKSRPFWELKRVERQARLEAQKAAQDFERATEVLRAAKEQVSLAE 110 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666677777665 778999998888887778732 1122 122333455555666666
Q ss_pred HHHh--hhhHHHHHHHHHHH
Q 001374 142 DRAA--HLDGALKECMRQIR 159 (1091)
Q Consensus 142 ~rv~--hLd~aLKec~~qLr 159 (1091)
.++. .=-.+++.|..=|+
T Consensus 111 ~sL~~~~~~~~~~~~~evln 130 (426)
T KOG2008|consen 111 QSLLEDDKRQFDSAWQEVLN 130 (426)
T ss_pred HHhhcchhhhhHHHHHHHHH
Confidence 5555 22234566655443
No 404
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=53.05 E-value=1.7e+02 Score=35.23 Aligned_cols=59 Identities=20% Similarity=0.171 Sum_probs=26.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 001374 866 QLKCMAESYRSLETHAQELEAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQ 924 (1091)
Q Consensus 866 qLk~~~e~ledLesrL~eLeaElkeLqeKVesLE~ELe~ek~~~eEleaK~~eLEeQLe 924 (1091)
.++.-.++.++|+.-+..++.--.....-|+..+..-..++....-++.|++-|+.+|.
T Consensus 154 nLErrrQEaeELEgyCsqLk~nCrkVt~SVedaEiKtnvLkqnS~~LEekLr~lq~qLq 212 (558)
T PF15358_consen 154 NLERRRQEAEELEGYCSQLKENCRKVTRSVEDAEIKTNVLKQNSALLEEKLRYLQQQLQ 212 (558)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcccccchHHHHHHHHHHHHHhc
Confidence 33333333333444444444333333333333333334444455555555555555555
No 405
>PRK00295 hypothetical protein; Provisional
Probab=53.05 E-value=89 Score=28.51 Aligned_cols=38 Identities=11% Similarity=0.028 Sum_probs=15.2
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001374 236 LKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMR 273 (1091)
Q Consensus 236 LkERIenlEKEne~LK~EL~~LqeELEiL~EElE~s~q 273 (1091)
|+.|+.+.+..++.|...+..+++++..+...+..+..
T Consensus 10 LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~ 47 (68)
T PRK00295 10 LESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIK 47 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444433333333
No 406
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=53.04 E-value=50 Score=40.35 Aligned_cols=21 Identities=14% Similarity=0.167 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001374 838 QLYETEQLLAEVKAQLASAQK 858 (1091)
Q Consensus 838 qLqelE~~LeELesQLesLqe 858 (1091)
.|.+.+.++.+|+.+|+.++.
T Consensus 70 ALteqQ~kasELEKqLaaLrq 90 (475)
T PRK13729 70 ATTEMQVTAAQMQKQYEEIRR 90 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555543
No 407
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=52.97 E-value=4e+02 Score=30.38 Aligned_cols=25 Identities=16% Similarity=0.153 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 001374 946 DLAAAAERLAECQETILLLGKQLKS 970 (1091)
Q Consensus 946 EIaaAeeKLAEcQeTI~sLEKQLKs 970 (1091)
++..+...+...+..+.....+|..
T Consensus 180 ~~~~~~~~~~~~~~~l~~a~~~l~~ 204 (327)
T TIGR02971 180 DVDLAQAEVKSALEAVQQAEALLEL 204 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5566666677777777777666653
No 408
>PF14739 DUF4472: Domain of unknown function (DUF4472)
Probab=52.60 E-value=2.6e+02 Score=28.09 Aligned_cols=91 Identities=16% Similarity=0.123 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001374 195 EQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRS 274 (1091)
Q Consensus 195 EkeLeelkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIenlEKEne~LK~EL~~LqeELEiL~EElE~s~qs 274 (1091)
.+.|-.++.+++.+.++.+ .++++++.++=++++++--++-+..........+...+...+.....+..+.-.+.+.
T Consensus 9 SKeLVDLQIe~~rL~Eq~E---aE~FELk~~vL~lE~rvleLel~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~l~~~ 85 (108)
T PF14739_consen 9 SKELVDLQIETNRLREQHE---AEKFELKNEVLRLENRVLELELHGDKAAPQIADLRHRLAEAQEDRQELQEEYVSLKKN 85 (108)
T ss_pred HHHHHHHHHHhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhcchhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555554433 4455566665555555555555555555555555555555555545555555555554
Q ss_pred HHHHHHHHHHHHHH
Q 001374 275 AEAANKQHMEGVKK 288 (1091)
Q Consensus 275 aeal~KQ~lEl~KK 288 (1091)
+.++.+.+..-+.+
T Consensus 86 ~~a~~k~~~~e~~k 99 (108)
T PF14739_consen 86 YQALPKAFEAEVAK 99 (108)
T ss_pred HHHHHHhhccHHHH
Confidence 44444444433333
No 409
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.46 E-value=3.9e+02 Score=30.12 Aligned_cols=120 Identities=17% Similarity=0.227 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 001374 163 EEHEQKLQDFVLTKTKQWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQ 242 (1091)
Q Consensus 163 eeqeqki~~~~~~~~~e~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIen 242 (1091)
..+..++-..+....+..=.-..+.-.++.....++..+.+.+.....++.+..+.+.+-......++.++...+++++-
T Consensus 25 ~n~~s~~D~f~q~~r~~~~nS~~efar~lS~~~~e~e~l~~~l~etene~~~~neL~~ek~~~q~~ieqeik~~q~elEv 104 (246)
T KOG4657|consen 25 HNQRSKIDSFIQSPRRRSMNSLVEFARALSQSQVELENLKADLRETENELVKVNELKTEKEARQMGIEQEIKATQSELEV 104 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 001374 243 CEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEG 285 (1091)
Q Consensus 243 lEKEne~LK~EL~~LqeELEiL~EElE~s~qsaeal~KQ~lEl 285 (1091)
+.+.+..|+.+.. --.+++...+..+.++.+..-+.....
T Consensus 105 l~~n~Q~lkeE~d---d~keiIs~kr~~~~Ka~e~~~kRkQds 144 (246)
T KOG4657|consen 105 LRRNLQLLKEEKD---DSKEIISQKRQALSKAKENAGKRKQDS 144 (246)
T ss_pred HHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHHHHHhhh
No 410
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=52.33 E-value=2.2e+02 Score=27.17 Aligned_cols=36 Identities=14% Similarity=0.166 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 823 TDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQK 858 (1091)
Q Consensus 823 ~eLee~~eklEel~~qLqelE~~LeELesQLesLqe 858 (1091)
..+..+..++......+..++..+..++.+......
T Consensus 7 ~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 42 (127)
T smart00502 7 ELLTKLRKKAAELEDALKQLISIIQEVEENAADVEA 42 (127)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444444443333
No 411
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=52.32 E-value=5.2e+02 Score=31.61 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHH
Q 001374 839 LYETEQLLAEVKAQLASAQKSNSLAE 864 (1091)
Q Consensus 839 LqelE~~LeELesQLesLqeS~selE 864 (1091)
|+-+++.+.+++..|.++++......
T Consensus 254 Lq~aEqsl~dlQk~Lekar~e~rnva 279 (575)
T KOG4403|consen 254 LQRAEQSLEDLQKRLEKAREEQRNVA 279 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhchh
Confidence 44556667777777777776444333
No 412
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=51.66 E-value=2.4e+02 Score=27.55 Aligned_cols=37 Identities=24% Similarity=0.471 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Q 001374 889 NLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQR 925 (1091)
Q Consensus 889 keLqeKVesLE~ELe~ek~~~eEleaK~~eLEeQLe~ 925 (1091)
..+..+++.|+..+..+...+..+..++..++..|..
T Consensus 90 ~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~ 126 (129)
T cd00890 90 EFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQ 126 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555555555543
No 413
>PRK00846 hypothetical protein; Provisional
Probab=51.53 E-value=92 Score=29.34 Aligned_cols=46 Identities=15% Similarity=0.040 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 813 ELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQK 858 (1091)
Q Consensus 813 qLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqe 858 (1091)
.++..+..++.++..-.+.++.+...+-.....|..|+.++..+..
T Consensus 10 ~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~ 55 (77)
T PRK00846 10 ALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLE 55 (77)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666677777777766666666666666666666666666555555
No 414
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=51.45 E-value=2.9e+02 Score=30.15 Aligned_cols=23 Identities=22% Similarity=0.187 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001374 836 KSQLYETEQLLAEVKAQLASAQK 858 (1091)
Q Consensus 836 ~~qLqelE~~LeELesQLesLqe 858 (1091)
..+|....+.+..|...+...++
T Consensus 87 e~~L~~~~qk~~tl~e~~en~K~ 109 (203)
T KOG3433|consen 87 ESQLATGSQKKATLGESIENRKA 109 (203)
T ss_pred HHHHHHhhhhHhHHHHHHHHHHh
Confidence 33333334444444444444444
No 415
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=51.18 E-value=3.5e+02 Score=29.28 Aligned_cols=70 Identities=17% Similarity=0.146 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001374 197 ELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMS 271 (1091)
Q Consensus 197 eLeelkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIenlEKEne~LK~EL~~LqeELEiL~EElE~s 271 (1091)
++..+.-++..+...+++++..+.....++..+.+-+. +..++.++..|+.+.....++|..+..-....
T Consensus 80 el~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt-----~eemQe~i~~L~kev~~~~erl~~~k~g~~~v 149 (201)
T KOG4603|consen 80 ELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALT-----TEEMQEEIQELKKEVAGYRERLKNIKAGTNHV 149 (201)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 34444444445555445444444433333333333222 45566667777777777777766666655444
No 416
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=51.08 E-value=5.6e+02 Score=31.56 Aligned_cols=9 Identities=44% Similarity=0.571 Sum_probs=5.9
Q ss_pred hhhhhhhhh
Q 001374 467 SELSQIKKE 475 (1091)
Q Consensus 467 sel~~fk~~ 475 (1091)
++.++.|+|
T Consensus 31 s~a~~~R~g 39 (554)
T KOG4677|consen 31 SEASQLREG 39 (554)
T ss_pred hhhhhhhcc
Confidence 566777764
No 417
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=50.59 E-value=99 Score=38.46 Aligned_cols=36 Identities=14% Similarity=0.201 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 821 LATDLARCTENLEMTKSQLYETEQLLAEVKAQLASA 856 (1091)
Q Consensus 821 lE~eLee~~eklEel~~qLqelE~~LeELesQLesL 856 (1091)
...+|.+++.+-.++++.+.++..++++++..+...
T Consensus 91 Vs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~ 126 (907)
T KOG2264|consen 91 VSLELTELEVKRQELNSEIEEINTKIEELKRLIPQK 126 (907)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 333333333333334444444444444444433333
No 418
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=50.47 E-value=1.8e+02 Score=38.40 Aligned_cols=79 Identities=16% Similarity=0.271 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 001374 845 LLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQL 923 (1091)
Q Consensus 845 ~LeELesQLesLqeS~selEeqLk~~~e~ledLesrL~eLeaElkeLqeKVesLE~ELe~ek~~~eEleaK~~eLEeQL 923 (1091)
.+..+...+..+.......+.+++.+...+..+..++..+...++.....|+.+.++|..+...+.....++..|...+
T Consensus 485 ~~s~~~~~~~~~~~~~~~~~~ei~~~~~~ln~~~qq~~~l~~~v~~~~~~ve~l~~~L~~~~~~~~~~~s~~~~l~~~~ 563 (847)
T KOG0998|consen 485 WISSLDNDLNLLPLQLSNDNREISSLEKELNELQQQLSVLEGSVKAIESQVENLQKELLDLIYEMADTRSKSTLLDDSF 563 (847)
T ss_pred ccccccchhhhcccccccchhhHHHHHHHHhhhHHHHhHHhhhhhhhhhhhhhhHhHHHHHHHHHHhhcccchhhhhhh
Confidence 3333344444444434444445555555555555555555555555555566677777777776666666776666666
No 419
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=50.34 E-value=2.9e+02 Score=28.08 Aligned_cols=39 Identities=15% Similarity=0.125 Sum_probs=18.0
Q ss_pred HHHHHHhHHHHhhhhhhHHHHHhhhhHHHHHHHHHHHhh
Q 001374 123 ALALKNHLESVTLSKLTAEDRAAHLDGALKECMRQIRNL 161 (1091)
Q Consensus 123 ~~~lK~~Le~~~~q~~~le~rv~hLd~aLKec~~qLr~~ 161 (1091)
+..++..++.....-..+...+..-...|..|+.+....
T Consensus 74 ~~~i~~~~~~l~~~w~~l~~~~~~r~~~L~~~~~~~~~~ 112 (213)
T cd00176 74 AEEIQERLEELNQRWEELRELAEERRQRLEEALDLQQFF 112 (213)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555444444444444444444444444443
No 420
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=50.34 E-value=4e+02 Score=29.65 Aligned_cols=12 Identities=25% Similarity=0.454 Sum_probs=6.4
Q ss_pred cCCCcccCCCCc
Q 001374 972 RPQSEVIGSPYS 983 (1091)
Q Consensus 972 a~q~e~~~~~~~ 983 (1091)
++.+=.+|+|..
T Consensus 146 APLTW~~GDprR 157 (272)
T KOG4552|consen 146 APLTWQMGDPRR 157 (272)
T ss_pred CccccccCCCCC
Confidence 344556666544
No 421
>PRK00295 hypothetical protein; Provisional
Probab=49.41 E-value=1.1e+02 Score=28.00 Aligned_cols=34 Identities=15% Similarity=0.188 Sum_probs=13.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 264 RNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQ 297 (1091)
Q Consensus 264 L~EElE~s~qsaeal~KQ~lEl~KKLaKLEaEcq 297 (1091)
++..+.+....++.++....+-.+.|..|+..|+
T Consensus 10 LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~ 43 (68)
T PRK00295 10 LESRQAFQDDTIQALNDVLVEQQRVIERLQLQMA 43 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444444444444444443333
No 422
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=49.39 E-value=4.9e+02 Score=30.39 Aligned_cols=27 Identities=11% Similarity=0.133 Sum_probs=13.2
Q ss_pred hhHHHHHhhhhHHHHHHHHHHHhhhHH
Q 001374 138 LTAEDRAAHLDGALKECMRQIRNLKEE 164 (1091)
Q Consensus 138 ~~le~rv~hLd~aLKec~~qLr~~ree 164 (1091)
.-+++++..+...|++.-++|...|..
T Consensus 173 ~fl~~ql~~~~~~l~~ae~~l~~fr~~ 199 (362)
T TIGR01010 173 AFAENEVKEAEQRLNATKAELLKYQIK 199 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334455555555555555555544443
No 423
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=49.09 E-value=2.7e+02 Score=27.26 Aligned_cols=31 Identities=19% Similarity=0.266 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 001374 887 EVNLLRAKIESLENELQDEKMSHHNAMAKCK 917 (1091)
Q Consensus 887 ElkeLqeKVesLE~ELe~ek~~~eEleaK~~ 917 (1091)
++..+...+..++.++..+...+..+...+.
T Consensus 95 r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~ 125 (129)
T cd00890 95 RLETLEKQIEKLEKQLEKLQDQITELQEELQ 125 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444444444333
No 424
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=48.79 E-value=3.9e+02 Score=29.05 Aligned_cols=101 Identities=17% Similarity=0.133 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 186 EFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRN 265 (1091)
Q Consensus 186 ELEaKLaElEkeLeelkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIenlEKEne~LK~EL~~LqeELEiL~ 265 (1091)
++..+-.++..+|....+.-.-|.++++-...++.... .+....-++-..++++...-..++...-+.|+.+.
T Consensus 54 e~~~q~~dl~~qL~aAEtRCslLEKQLeyMRkmv~~ae-------~er~~~le~q~~l~~e~~~~~~~~~~klekLe~LE 126 (178)
T PF14073_consen 54 ELSKQNQDLSSQLSAAETRCSLLEKQLEYMRKMVESAE-------KERNAVLEQQVSLQRERQQDQSELQAKLEKLEKLE 126 (178)
T ss_pred hhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHH
Confidence 33334445566666666666667777776666655433 22233333333333333333444555666777777
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 001374 266 EEKNMSMRSAEAANKQHMEGVKKIAKLE 293 (1091)
Q Consensus 266 EElE~s~qsaeal~KQ~lEl~KKLaKLE 293 (1091)
.+--.+...-..+...+.++..||.+-+
T Consensus 127 ~E~~rLt~~Q~~ae~Ki~~LE~KL~eEe 154 (178)
T PF14073_consen 127 KEYLRLTATQSLAETKIKELEEKLQEEE 154 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766666666666666666666664433
No 425
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=48.78 E-value=78 Score=34.60 Aligned_cols=30 Identities=30% Similarity=0.364 Sum_probs=25.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhhhhhHHHH
Q 001374 364 FLTERLLAMEEETKMLKEALAKRNSELQAS 393 (1091)
Q Consensus 364 ~l~~rl~~~eee~k~lke~l~~k~~elq~s 393 (1091)
.+.+=|..+|+.-.+|...|+.|..||+.-
T Consensus 164 ~v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L 193 (195)
T PF12761_consen 164 SVREDLDTIEEQVDGLESHLSSKKQELQQL 193 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356677888888999999999999999954
No 426
>KOG3215 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.49 E-value=4.2e+02 Score=29.42 Aligned_cols=98 Identities=19% Similarity=0.107 Sum_probs=62.7
Q ss_pred hcchhhHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhHHHHhhhhhhHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHHHH
Q 001374 94 EISAKEDLVKQHTKVAEEAVSGWEKAEAEALALKNHLESVTLSKLTAEDRAAHLDGALKECMRQIRNLKEEHEQKLQDFV 173 (1091)
Q Consensus 94 ~~~~kd~lvkqh~kvaeeav~gwekae~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLKec~~qLr~~reeqeqki~~~~ 173 (1091)
+=..-|.+|++|+|.--.|+.--+|.+.++..-++.--+..+..+..| +..+ .-|++.++.
T Consensus 27 e~~~~dr~v~~l~ksf~~~~~E~~kee~~y~ea~ri~Ka~L~~Lsq~E----------------~~ml---Ktqrv~e~n 87 (222)
T KOG3215|consen 27 EGDGGDRLVEHLEKSFVLAKAEIEKEEKEYSEAKRIRKALLASLSQDE----------------PSML---KTQRVIEMN 87 (222)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHHHHHHHhhcc----------------cchH---HHHHHHHHH
Confidence 346678999999999999998888888665554444222121111110 0111 124666666
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 174 LTKTKQWDKIRLEFEAKIANFEQELLRSAAENATLSR 210 (1091)
Q Consensus 174 ~~~~~e~e~~~~ELEaKLaElEkeLeelkaEl~aLee 210 (1091)
....-.++.++.+.+.+|....+.++.++.++.....
T Consensus 88 lre~e~~~q~k~Eiersi~~a~~kie~lkkql~eaKi 124 (222)
T KOG3215|consen 88 LREIENLVQKKLEIERSIQKARNKIELLKKQLHEAKI 124 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777888888888888887777777777665554
No 427
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=48.43 E-value=2.1e+02 Score=25.89 Aligned_cols=41 Identities=17% Similarity=0.263 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 224 EEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIR 264 (1091)
Q Consensus 224 eeiErlEgEi~LLkERIenlEKEne~LK~EL~~LqeELEiL 264 (1091)
+++.++.+..-....+++..+..+..|..+|..+.++++.+
T Consensus 18 eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 18 EELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444455555566677777777777777777777765543
No 428
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=48.34 E-value=1.3e+02 Score=27.51 Aligned_cols=34 Identities=18% Similarity=0.037 Sum_probs=15.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 234 ELLKGNIEQCEREINSAKYELHIVSKELEIRNEE 267 (1091)
Q Consensus 234 ~LLkERIenlEKEne~LK~EL~~LqeELEiL~EE 267 (1091)
..|-.+.+.+..+|..|..++..+..+...+.+.
T Consensus 10 e~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ek 43 (65)
T TIGR02449 10 EHLLEYLERLKSENRLLRAQEKTWREERAQLLEK 43 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444455555555444444443333333
No 429
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=48.27 E-value=3.9e+02 Score=28.92 Aligned_cols=88 Identities=16% Similarity=0.248 Sum_probs=50.8
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHh
Q 001374 232 EIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSA-----------EAANKQHMEGVKKIAKLEAECQRLR 300 (1091)
Q Consensus 232 Ei~LLkERIenlEKEne~LK~EL~~LqeELEiL~EElE~s~qsa-----------eal~KQ~lEl~KKLaKLEaEcqrLr 300 (1091)
-..+|.+.++.....|..|..+|..+...+..+..++..-.... ..-+..++.+=..+..+...+..++
T Consensus 82 vN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~~~~~y~~~eh~rll~LWr~v~~lRr~f~elr 161 (182)
T PF15035_consen 82 VNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWREEEENFNQYLSSEHSRLLSLWREVVALRRQFAELR 161 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777777777777776666666555544433222 2233333444445555666666666
Q ss_pred hhhhccCCChHHHHHHHHHHhhhcC
Q 001374 301 GLVRKKLPGPAALAQMKMEVESLGR 325 (1091)
Q Consensus 301 ~l~rk~lpgpaa~a~mk~ev~~l~~ 325 (1091)
.-+-+- |+.||.|+-..+|
T Consensus 162 ~~Terd------L~~~r~e~~r~~r 180 (182)
T PF15035_consen 162 TATERD------LSDMRAEFARTSR 180 (182)
T ss_pred HHHHhh------HHHHHHHHHHHHc
Confidence 655543 4677777765543
No 430
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=48.13 E-value=4.8e+02 Score=29.91 Aligned_cols=141 Identities=18% Similarity=0.138 Sum_probs=77.3
Q ss_pred HHHHHhHHHHhhhhhhHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 124 LALKNHLESVTLSKLTAEDRAAHLDGALKECMRQIRNLKEEHEQKLQDFVLTKT-KQWDKIRLEFEAKIANFEQELLRSA 202 (1091)
Q Consensus 124 ~~lK~~Le~~~~q~~~le~rv~hLd~aLKec~~qLr~~reeqeqki~~~~~~~~-~e~e~~~~ELEaKLaElEkeLeelk 202 (1091)
..++++.+..+..|..|-.-+-++|+.--..+|.|-+=.+ .=..+.+++.... ...+.++.+|+.--...+.++..+.
T Consensus 9 ~el~~h~~~L~~~N~~L~~~IqdtE~st~~~Vr~lLqqy~-~~~~~i~~le~~~~~~l~~ak~eLqe~eek~e~~l~~Lq 87 (258)
T PF15397_consen 9 QELKKHEDFLTKLNKELIKEIQDTEDSTALKVRKLLQQYD-IYRTAIDILEYSNHKQLQQAKAELQEWEEKEESKLSKLQ 87 (258)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhHHhhHHHHHHHHHHHHH-HHHHHHHHHHccChHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4577778888888888888888888776666655543222 2233444433222 2345555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001374 203 AENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMS 271 (1091)
Q Consensus 203 aEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIenlEKEne~LK~EL~~LqeELEiL~EElE~s 271 (1091)
.++..++..+...+.++.-|..=.. .+.-+-.-+|.++.+++..|+.+ ++.+++.+.+.+...
T Consensus 88 ~ql~~l~akI~k~~~el~~L~TYkD---~EYPvK~vqIa~L~rqlq~lk~~---qqdEldel~e~~~~e 150 (258)
T PF15397_consen 88 QQLEQLDAKIQKTQEELNFLSTYKD---HEYPVKAVQIANLVRQLQQLKDS---QQDELDELNEMRQME 150 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh---hhhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 5555555555555555544433222 34444444666666666666553 333444455444444
No 431
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=48.10 E-value=3.7e+02 Score=28.57 Aligned_cols=18 Identities=33% Similarity=0.468 Sum_probs=8.1
Q ss_pred hhHHH--HHHHHHHHHhHHH
Q 001374 115 GWEKA--EAEALALKNHLES 132 (1091)
Q Consensus 115 gweka--e~e~~~lK~~Le~ 132 (1091)
||-.. |+-+.++...|.+
T Consensus 15 Gft~~QAe~i~~~l~~~l~~ 34 (177)
T PF07798_consen 15 GFTEEQAEAIMKALREVLND 34 (177)
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 66444 4444444444433
No 432
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=47.84 E-value=1.5e+02 Score=31.50 Aligned_cols=29 Identities=24% Similarity=0.236 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 828 CTENLEMTKSQLYETEQLLAEVKAQLASA 856 (1091)
Q Consensus 828 ~~eklEel~~qLqelE~~LeELesQLesL 856 (1091)
|-..+-.+-.++..++..++.++.+....
T Consensus 116 ~I~r~~~li~~l~~~~~~~~~~~kq~~~~ 144 (192)
T PF05529_consen 116 VIRRVHSLIKELIKLEEKLEALKKQAESA 144 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444445555555555544444433
No 433
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=47.48 E-value=1.8e+02 Score=35.79 Aligned_cols=27 Identities=15% Similarity=0.167 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 832 LEMTKSQLYETEQLLAEVKAQLASAQK 858 (1091)
Q Consensus 832 lEel~~qLqelE~~LeELesQLesLqe 858 (1091)
+..+-.++++++.++..|..+-..+.+
T Consensus 61 lrTlva~~k~~r~~~~~l~~~N~~l~~ 87 (472)
T TIGR03752 61 LRTLVAEVKELRKRLAKLISENEALKA 87 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555544
No 434
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=47.27 E-value=2.7e+02 Score=28.66 Aligned_cols=35 Identities=29% Similarity=0.364 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 001374 890 LLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQ 924 (1091)
Q Consensus 890 eLqeKVesLE~ELe~ek~~~eEleaK~~eLEeQLe 924 (1091)
.|....++++++|+.++...+.+.+++.+|+..|=
T Consensus 85 ~LEe~ke~l~k~i~~les~~e~I~~~m~~LK~~LY 119 (131)
T KOG1760|consen 85 QLEEKKETLEKEIEELESELESISARMDELKKVLY 119 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666666666666666666553
No 435
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=46.95 E-value=1.5e+02 Score=29.11 Aligned_cols=54 Identities=20% Similarity=0.236 Sum_probs=29.5
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 001374 805 KFSLEEFEELKLEKDNLATDLARCTENLEMT--KSQLYETEQLLAEVKAQLASAQK 858 (1091)
Q Consensus 805 ~~s~EelEqLEsEkeelE~eLee~~eklEel--~~qLqelE~~LeELesQLesLqe 858 (1091)
....++++.+...+.....++..+..+++.+ ...+..++-.+.+++-++..+..
T Consensus 31 ~a~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~ 86 (106)
T PF10805_consen 31 YAKREDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSA 86 (106)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3445667676666666666665555555555 55555554444444444444444
No 436
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=46.57 E-value=81 Score=35.82 Aligned_cols=82 Identities=26% Similarity=0.235 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhcccchhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 890 LLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNENCAVCSSEADENKIKQDRDLAAAAERLAECQETILLLGKQLK 969 (1091)
Q Consensus 890 eLqeKVesLE~ELe~ek~~~eEleaK~~eLEeQLe~~~~~~lk~q~dkdLKikqEkEIaaAeeKLAEcQeTI~sLEKQLK 969 (1091)
..++++..|......+...++.+++++.+-+.+|+.+............-............+.+..=...|..|+.+++
T Consensus 177 ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~~~~~~~~~~~~~~~~~~~~~~~de~I~rEeeEIreLE~k~~ 256 (259)
T PF08657_consen 177 GAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMNRSSSDSSSDDEESEESSEDSVDTDEDIRREEEEIRELERKKR 256 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666667777777777777777777766521111000000011111223344556666677888888877
Q ss_pred hh
Q 001374 970 SL 971 (1091)
Q Consensus 970 sL 971 (1091)
.|
T Consensus 257 ~L 258 (259)
T PF08657_consen 257 EL 258 (259)
T ss_pred hc
Confidence 65
No 437
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=46.48 E-value=2.4e+02 Score=26.14 Aligned_cols=39 Identities=21% Similarity=0.297 Sum_probs=16.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 864 ETQLKCMAESYRSLETHAQELEAEVNLLRAKIESLENEL 902 (1091)
Q Consensus 864 EeqLk~~~e~ledLesrL~eLeaElkeLqeKVesLE~EL 902 (1091)
+.+.+.....|.++...+.....+...|...|..|...+
T Consensus 20 ~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv 58 (70)
T PF04899_consen 20 EKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQV 58 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444433333
No 438
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=46.46 E-value=7.8e+02 Score=31.93 Aligned_cols=97 Identities=13% Similarity=0.047 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHH-HHHH
Q 001374 810 EFEELKLEKDNLATDLARCTENLEMTKSQLYETE-QLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQE-LEAE 887 (1091)
Q Consensus 810 elEqLEsEkeelE~eLee~~eklEel~~qLqelE-~~LeELesQLesLqeS~selEeqLk~~~e~ledLesrL~e-LeaE 887 (1091)
++=.|++.+.=++.-|..+=.+|++-+.+..... ...++|......+......++.+++.++.++- +.+-+. .+--
T Consensus 200 ~ll~L~arm~PLraSLdfLP~Ri~~F~~ra~~~fp~a~e~L~~r~~~L~~k~~~L~~e~~~LK~ELi--edRW~~vFr~l 277 (683)
T PF08580_consen 200 SLLALFARMQPLRASLDFLPMRIEEFQSRAESIFPSACEELEDRYERLEKKWKKLEKEAESLKKELI--EDRWNIVFRNL 277 (683)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHH
Confidence 3444555555555555444455555444443333 23344444444444433334444443332221 111111 1234
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 001374 888 VNLLRAKIESLENELQDEKMS 908 (1091)
Q Consensus 888 lkeLqeKVesLE~ELe~ek~~ 908 (1091)
.++++..++.++..+.+++..
T Consensus 278 ~~q~~~m~esver~~~kl~~~ 298 (683)
T PF08580_consen 278 GRQAQKMCESVERSLSKLQEA 298 (683)
T ss_pred HHHHHHHHHHHHHHHHHhhcc
Confidence 456666667777777666655
No 439
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=46.44 E-value=3.4e+02 Score=34.80 Aligned_cols=87 Identities=17% Similarity=0.219 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001374 221 KISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLR 300 (1091)
Q Consensus 221 EL~eeiErlEgEi~LLkERIenlEKEne~LK~EL~~LqeELEiL~EElE~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr 300 (1091)
++..+++++.+++..+...|+..+.++..-+..+.....++.......-+++........+..-+..-..++..-|+.++
T Consensus 83 ~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~q~c~~~~~~l~e~~~rl~~~~~~~q 162 (632)
T PF14817_consen 83 ELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYSQQCEEQRRILREYTKRLQGQVEQLQ 162 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666667777777777777776666666666666666666655556666667777777778888899999
Q ss_pred hhhhccC
Q 001374 301 GLVRKKL 307 (1091)
Q Consensus 301 ~l~rk~l 307 (1091)
.+-||.-
T Consensus 163 ~~~R~a~ 169 (632)
T PF14817_consen 163 DIQRKAK 169 (632)
T ss_pred HHHhhcc
Confidence 9988753
No 440
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=46.35 E-value=3.4e+02 Score=32.70 Aligned_cols=18 Identities=39% Similarity=0.457 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001374 952 ERLAECQETILLLGKQLK 969 (1091)
Q Consensus 952 eKLAEcQeTI~sLEKQLK 969 (1091)
+-+..||..|..||-+..
T Consensus 353 EalEscqtrisKlEl~qq 370 (455)
T KOG3850|consen 353 EALESCQTRISKLELQQQ 370 (455)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 446666666666666554
No 441
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=46.06 E-value=5.2e+02 Score=29.80 Aligned_cols=21 Identities=33% Similarity=0.237 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 001374 952 ERLAECQETILLLGKQLKSLR 972 (1091)
Q Consensus 952 eKLAEcQeTI~sLEKQLKsLa 972 (1091)
-.++|.+.-|...|+.|=.+=
T Consensus 208 ~E~aEK~~Ila~~gk~Ll~ll 228 (271)
T PF13805_consen 208 IERAEKQAILAEYGKRLLELL 228 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 568889999999999997664
No 442
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=45.64 E-value=2.9e+02 Score=30.42 Aligned_cols=24 Identities=25% Similarity=0.227 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 811 FEELKLEKDNLATDLARCTENLEM 834 (1091)
Q Consensus 811 lEqLEsEkeelE~eLee~~eklEe 834 (1091)
.-.|+.++.+++..|..++...+.
T Consensus 98 evrLkrELa~Le~~l~~~~~~~~~ 121 (195)
T PF12761_consen 98 EVRLKRELAELEEKLSKVEQAAES 121 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345888888888888887766665
No 443
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=45.44 E-value=6.5e+02 Score=33.03 Aligned_cols=20 Identities=15% Similarity=0.134 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHhhhhh
Q 001374 661 QELVAAITQIHDFVLFLGKE 680 (1091)
Q Consensus 661 ~~l~~~~~~i~~~v~~~~~e 680 (1091)
+.++....++..++..++..
T Consensus 389 StfS~~m~~~~~Il~~~~~~ 408 (782)
T PRK00409 389 STFSGHMTNIVRILEKADKN 408 (782)
T ss_pred hHHHHHHHHHHHHHHhCCcC
Confidence 34555555565655555333
No 444
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=44.94 E-value=6.1e+02 Score=30.22 Aligned_cols=54 Identities=17% Similarity=0.116 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001374 248 NSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRG 301 (1091)
Q Consensus 248 e~LK~EL~~LqeELEiL~EElE~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~ 301 (1091)
+.+...|.....+.+.+..+++...+....+..+...+.+-+..+|+..+-++-
T Consensus 241 aqvek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh~~p 294 (561)
T KOG1103|consen 241 AQVEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQHLRP 294 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCc
Confidence 345556666667777777777777777677777777777777777777665543
No 445
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=44.93 E-value=1.6e+02 Score=34.00 Aligned_cols=64 Identities=19% Similarity=0.248 Sum_probs=34.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hccCCChH
Q 001374 238 GNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLV--RKKLPGPA 311 (1091)
Q Consensus 238 ERIenlEKEne~LK~EL~~LqeELEiL~EElE~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l~--rk~lpgpa 311 (1091)
..+.++..+..++...+..++.+ +-+.+..+...+-.+...+.+++.++..+..+| |+-+++|.
T Consensus 136 ~~~~~l~~~va~v~q~~~~qq~E----------ls~~L~~l~~~~~~~s~~~~k~esei~~Ik~lvln~~~f~~p~ 201 (300)
T KOG2629|consen 136 KSLNALMDEVAQVSQLLATQQSE----------LSRALASLKNTLVQLSRNIEKLESEINTIKQLVLNMSNFAPPV 201 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcccccCCCC
Confidence 34444555555555444444443 222333333334466677888888888887776 44444444
No 446
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.48 E-value=1.4e+02 Score=27.89 Aligned_cols=50 Identities=14% Similarity=0.224 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 001374 195 EQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCE 244 (1091)
Q Consensus 195 EkeLeelkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIenlE 244 (1091)
++++..+.....-....+++++..+.+....+++...++..+-+|+...+
T Consensus 7 E~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~ 56 (72)
T COG2900 7 EARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444444445555666666666777776777777777777777666554
No 447
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=44.47 E-value=7.7e+02 Score=31.27 Aligned_cols=40 Identities=18% Similarity=0.204 Sum_probs=22.7
Q ss_pred HHHhhhhHHHHHHHHHHHHhHHHHhhhhhhHHHHHhhhhH
Q 001374 110 EEAVSGWEKAEAEALALKNHLESVTLSKLTAEDRAAHLDG 149 (1091)
Q Consensus 110 eeav~gwekae~e~~~lK~~Le~~~~q~~~le~rv~hLd~ 149 (1091)
.++..-|.+++.++..++..-....++.--|+=++..|+.
T Consensus 160 ~~~y~~w~~~~~~l~~~~~~~~e~~~~~d~L~fq~~Ele~ 199 (557)
T COG0497 160 QEAYQAWKQARRELEDLQEKERERAQRADLLQFQLEELEE 199 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456678877776666665555555544444444444443
No 448
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=44.41 E-value=3.3e+02 Score=26.95 Aligned_cols=17 Identities=24% Similarity=0.352 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001374 834 MTKSQLYETEQLLAEVK 850 (1091)
Q Consensus 834 el~~qLqelE~~LeELe 850 (1091)
.+..++..+...+++++
T Consensus 17 ~l~~~i~~l~~~i~e~~ 33 (126)
T TIGR00293 17 SLQAQIAALRALIAELE 33 (126)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 449
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=44.15 E-value=8.4e+02 Score=31.64 Aligned_cols=66 Identities=17% Similarity=0.292 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhh
Q 001374 863 AETQLKCMAESYRSLETHAQELEAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNEN 928 (1091)
Q Consensus 863 lEeqLk~~~e~ledLesrL~eLeaElkeLqeKVesLE~ELe~ek~~~eEleaK~~eLEeQLe~~~~ 928 (1091)
.+.+++.+......+..+......-+..|+..-..|.+.+..+..++..+..++..|+.+++.+..
T Consensus 585 k~kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk 650 (786)
T PF05483_consen 585 KEKQMKILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKK 650 (786)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555555555555555666667777777777777777777888888888888877664
No 450
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=43.85 E-value=5.9e+02 Score=33.35 Aligned_cols=9 Identities=22% Similarity=0.154 Sum_probs=4.2
Q ss_pred CCCcccccc
Q 001374 1071 TPEKSSRGF 1079 (1091)
Q Consensus 1071 ~~~~~~~~~ 1079 (1091)
.++=.-||+
T Consensus 693 ~~~ldl~G~ 701 (771)
T TIGR01069 693 SLTLDLRGQ 701 (771)
T ss_pred CceEECCCC
Confidence 334444554
No 451
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=43.70 E-value=3.4e+02 Score=26.95 Aligned_cols=30 Identities=23% Similarity=0.329 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 001374 894 KIESLENELQDEKMSHHNAMAKCKELEEQL 923 (1091)
Q Consensus 894 KVesLE~ELe~ek~~~eEleaK~~eLEeQL 923 (1091)
++..|+..+..+...+..+..++..++..|
T Consensus 95 r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l 124 (129)
T cd00584 95 KIEELTKQIEKLQKELAKLKDQINTLEAEL 124 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 452
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=43.52 E-value=3.7e+02 Score=28.79 Aligned_cols=50 Identities=18% Similarity=0.266 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhh
Q 001374 879 THAQELEAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNEN 928 (1091)
Q Consensus 879 srL~eLeaElkeLqeKVesLE~ELe~ek~~~eEleaK~~eLEeQLe~~~~ 928 (1091)
.....++.++..++.++..|+.+++.+...+..++..++.|=.-|.+...
T Consensus 104 ~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RARk 153 (161)
T TIGR02894 104 KENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRARK 153 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556666666666666677777777777777777777666666543
No 453
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=43.38 E-value=1.5e+02 Score=31.19 Aligned_cols=23 Identities=17% Similarity=0.169 Sum_probs=16.1
Q ss_pred HHHHHHHHHhhcCCCcccCCCCc
Q 001374 961 ILLLGKQLKSLRPQSEVIGSPYS 983 (1091)
Q Consensus 961 I~sLEKQLKsLa~q~e~~~~~~~ 983 (1091)
+.-|..||+.|+....+|+-+..
T Consensus 118 ~~Gldeqi~~lkes~~yLF~~~~ 140 (155)
T PF06810_consen 118 LKGLDEQIKALKESDPYLFEEEE 140 (155)
T ss_pred cccHHHHHHHHHhcCchhccCCc
Confidence 66677888888877666666433
No 454
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=43.32 E-value=2.4e+02 Score=26.30 Aligned_cols=36 Identities=19% Similarity=0.210 Sum_probs=19.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001374 238 GNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMR 273 (1091)
Q Consensus 238 ERIenlEKEne~LK~EL~~LqeELEiL~EElE~s~q 273 (1091)
+..+.+.+++-.|+.++..+..+++.+...+....+
T Consensus 36 ~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~ 71 (75)
T PF07989_consen 36 ESIEELLKENIELKVEVESLKRELQEKKKLLKEAEK 71 (75)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666666666665555554444433
No 455
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=43.30 E-value=1.7e+02 Score=36.68 Aligned_cols=14 Identities=36% Similarity=0.247 Sum_probs=11.4
Q ss_pred HHHhHhhhccccCC
Q 001374 496 FLEMEKLACLSNDT 509 (1091)
Q Consensus 496 FlEmEkLa~~~~~~ 509 (1091)
-+|||||-.||.=.
T Consensus 255 p~eleklyslp~w~ 268 (907)
T KOG2264|consen 255 PAELEKLYSLPHWR 268 (907)
T ss_pred hHhhhhhhcCcccc
Confidence 78999998888644
No 456
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=43.11 E-value=7.5e+02 Score=30.75 Aligned_cols=15 Identities=13% Similarity=0.049 Sum_probs=6.2
Q ss_pred ChHHHHHHHHHHhhh
Q 001374 309 GPAALAQMKMEVESL 323 (1091)
Q Consensus 309 gpaa~a~mk~ev~~l 323 (1091)
|--+=-+++.=||..
T Consensus 203 G~WGE~qLerILE~s 217 (475)
T PRK10361 203 GNWGEVVLTRVLEAS 217 (475)
T ss_pred cchHHHHHHHHHHHh
Confidence 433333444444443
No 457
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=42.74 E-value=2.3e+02 Score=30.06 Aligned_cols=67 Identities=13% Similarity=0.114 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHhh
Q 001374 848 EVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVNLLRAKIESLENELQDEKMS-HHNAMAKCKELEEQLQRN 926 (1091)
Q Consensus 848 ELesQLesLqeS~selEeqLk~~~e~ledLesrL~eLeaElkeLqeKVesLE~ELe~ek~~-~eEleaK~~eLEeQLe~~ 926 (1091)
..+.+++....++..+++.++.+...|+.+...++- +..++..+-.. .+++..++.+++.-++.+
T Consensus 69 g~kk~~~~~~eelerLe~~iKdl~~lye~Vs~d~Np--------------f~s~~~qes~~~veel~eqV~el~~i~emv 134 (157)
T COG3352 69 GQKKQLQDIKEELERLEENIKDLVSLYELVSRDFNP--------------FMSKTPQESRGIVEELEEQVNELKMIVEMV 134 (157)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--------------HHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444333 33333222222 455555666666655554
Q ss_pred hh
Q 001374 927 EN 928 (1091)
Q Consensus 927 ~~ 928 (1091)
+.
T Consensus 135 ~~ 136 (157)
T COG3352 135 IK 136 (157)
T ss_pred hc
Confidence 43
No 458
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=42.65 E-value=4.5e+02 Score=28.12 Aligned_cols=43 Identities=12% Similarity=-0.011 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 001374 243 CEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEG 285 (1091)
Q Consensus 243 lEKEne~LK~EL~~LqeELEiL~EElE~s~qsaeal~KQ~lEl 285 (1091)
+..++..|+.++..++++.+.+..+...+.+........+..+
T Consensus 102 ~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L 144 (161)
T TIGR02894 102 LQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTL 144 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555544444444444444444443333333
No 459
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=42.47 E-value=7.3e+02 Score=30.47 Aligned_cols=62 Identities=16% Similarity=0.195 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH--HHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 001374 830 ENLEMTKSQLYETEQLLAEVKAQLASAQKSNSL--AETQLKCMAESYRSLETHAQELEAEVNLL 891 (1091)
Q Consensus 830 eklEel~~qLqelE~~LeELesQLesLqeS~se--lEeqLk~~~e~ledLesrL~eLeaElkeL 891 (1091)
+.+.-.+.++..++..+...+..|...+..... -+.+.......+..|+.++..+++++..+
T Consensus 242 D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~~Le~qLa~~~aeL~~L 305 (434)
T PRK15178 242 ERILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFETQLAEAKAEYAQL 305 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555443332 22333344444445555555555555444
No 460
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=42.46 E-value=6.2e+02 Score=29.62 Aligned_cols=119 Identities=16% Similarity=0.128 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHH----HH
Q 001374 809 EEFEELKLEKDNLATDLARCTENLEM-----TKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSL----ET 879 (1091)
Q Consensus 809 EelEqLEsEkeelE~eLee~~eklEe-----l~~qLqelE~~LeELesQLesLqeS~selEeqLk~~~e~ledL----es 879 (1091)
...++.+.+-......|.++.+++.. +...+.++...|++.+..+..++..+..++.++......+..- ..
T Consensus 41 Q~~EQAr~~A~~fA~~ld~~~~kl~~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~~~~~ 120 (301)
T PF06120_consen 41 QNAEQARQEAIEFADSLDELKEKLKEMSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEKGITENG 120 (301)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcch
Confidence 34555555555556666666655543 3334444445555555555555544444444443222111110 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhh
Q 001374 880 HAQELEAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNE 927 (1091)
Q Consensus 880 rL~eLeaElkeLqeKVesLE~ELe~ek~~~eEleaK~~eLEeQLe~~~ 927 (1091)
.+...-..+.....++..+..+|......+.....+....+..|....
T Consensus 121 ~~~n~~~~~~~~t~~la~~t~~L~~~~~~l~q~~~k~~~~q~~l~~~~ 168 (301)
T PF06120_consen 121 YIINHLMSQADATRKLAEATRELAVAQERLEQMQSKASETQATLNDLT 168 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000123445555555666666665556666666666665555433
No 461
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=42.34 E-value=9.8e+02 Score=31.91 Aligned_cols=181 Identities=17% Similarity=0.222 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHhhhhhhHHHHHhhhhHHHHH----------HHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 001374 123 ALALKNHLESVTLSKLTAEDRAAHLDGALKE----------CMRQIRNLKEEHEQKLQDFVLTKTKQWDKIRLEFEAKIA 192 (1091)
Q Consensus 123 ~~~lK~~Le~~~~q~~~le~rv~hLd~aLKe----------c~~qLr~~reeqeqki~~~~~~~~~e~e~~~~ELEaKLa 192 (1091)
+..|-+++.-......+.+.||+-|..-+ + |++++|..++.+-.+..-++..-..--..+..+|++++.
T Consensus 629 ~~EL~~q~~~L~ee~~af~~~v~~l~~~~-e~~~~~ls~~~~~~r~~~~~e~~~Ee~r~~le~~~~~t~El~~~L~ae~~ 707 (984)
T COG4717 629 KAELTHQVARLREEQAAFEERVEGLLAVL-EAQFIDLSTLFCVQRLRVAAELQKEEARLALEGNIERTKELNDELRAELE 707 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hcccchhHHHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHhhHHHHH
Q 001374 193 NFEQELLRS--------AAENATLSRSLQERSNMLIKISEEKSQAE--------------------AEIELLKGNIEQCE 244 (1091)
Q Consensus 193 ElEkeLeel--------kaEl~aLeeqLEelqeeI~EL~eeiErlE--------------------gEi~LLkERIenlE 244 (1091)
...+++..+ ....-..-+..+.+.....++..--++++ -+...+.+.++.+.
T Consensus 708 ~~~kei~dLfd~~~~~~ed~F~e~A~~~qq~~q~~srl~~~~aql~~v~~~~~eL~~~~~~~~~~e~E~~~lEe~~d~~~ 787 (984)
T COG4717 708 LHRKEILDLFDCGTADTEDAFREAAREEQQLTQRESRLESLEAQLEGVAAEAYELSASLDQRELKEEELALLEEAIDALD 787 (984)
T ss_pred HHHHHHHHHHhhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHhhhhhhhhhhhhHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 001374 245 REINSAKYELHIVSKELEIRNE--EKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLVR 304 (1091)
Q Consensus 245 KEne~LK~EL~~LqeELEiL~E--ElE~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l~r 304 (1091)
.+...+..++..+..+++.+.. ....+++....+..++.+..++.+.+..-.+-+.--+|
T Consensus 788 ee~~el~a~v~~~~~qi~~lE~g~~~a~lr~~~~slk~~l~e~ar~Wasl~~~~~vl~e~l~ 849 (984)
T COG4717 788 EEVEELHAQVAALSRQIAQLEGGGTVAELRQRRESLKEDLEEKARKWASLRLAVQVLEEALR 849 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 462
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=41.99 E-value=6e+02 Score=33.29 Aligned_cols=10 Identities=20% Similarity=0.235 Sum_probs=4.1
Q ss_pred hhhhHHHHHH
Q 001374 113 VSGWEKAEAE 122 (1091)
Q Consensus 113 v~gwekae~e 122 (1091)
.+|-.-.+..
T Consensus 412 g~GtD~~eg~ 421 (771)
T TIGR01069 412 GAGTDPDEGS 421 (771)
T ss_pred CCCCCHHHHH
Confidence 3444444433
No 463
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=41.97 E-value=74 Score=28.23 Aligned_cols=40 Identities=23% Similarity=0.320 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 001374 880 HAQELEAEVNLLRAKIESLENELQDEKMSHHNAMAKCKEL 919 (1091)
Q Consensus 880 rL~eLeaElkeLqeKVesLE~ELe~ek~~~eEleaK~~eL 919 (1091)
++.+++.++-.+...+.+++.|++.++..++++...+++|
T Consensus 1 Ri~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~l 40 (55)
T PF05377_consen 1 RIDELENELPRIESSINTVKKENEEISESVEKIEENVKDL 40 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 464
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=41.42 E-value=3.5e+02 Score=35.76 Aligned_cols=105 Identities=21% Similarity=0.265 Sum_probs=0.0
Q ss_pred HHHHHHhhhhHHH-----HHHHHHHHHhHHHHhhhhhhHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHH
Q 001374 107 KVAEEAVSGWEKA-----EAEALALKNHLESVTLSKLTAEDRAAHLDGALKECMRQIRNLKEEHEQKLQDFVLTKTKQWD 181 (1091)
Q Consensus 107 kvaeeav~gweka-----e~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLKec~~qLr~~reeqeqki~~~~~~~~~e~e 181 (1091)
||+.||-.|.-|| |+|--.||++|+......... |.-.|..+++-|.+||=...-|.+.|....+==+
T Consensus 1070 kl~~eaq~~Q~k~LK~~~e~e~kElk~~l~kkr~e~ik~-------~~~~kdK~e~er~~rE~n~s~i~~~V~e~krL~~ 1142 (1189)
T KOG1265|consen 1070 KLLSEAQTNQTKALKESLEKETKELKKKLDKKRMEDIKV-------DKVIKDKAERERRKRELNSSNIKEFVEERKRLAE 1142 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-------ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 182 KIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNM 218 (1091)
Q Consensus 182 ~~~~ELEaKLaElEkeLeelkaEl~aLeeqLEelqee 218 (1091)
+.....+.=...-..-|+.+..+-.+++.++...-..
T Consensus 1143 ~~~k~~e~L~k~~~~~leql~e~~kal~~e~~~~~e~ 1179 (1189)
T KOG1265|consen 1143 KQSKRQEQLVKKHLEVLEQLAEEEKALDAEAEQEYEE 1179 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
No 465
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=41.25 E-value=1.1e+02 Score=34.84 Aligned_cols=25 Identities=16% Similarity=0.249 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHH
Q 001374 896 ESLENELQDEKMSHHNAMAKCKELE 920 (1091)
Q Consensus 896 esLE~ELe~ek~~~eEleaK~~eLE 920 (1091)
...+..|+.+...+++|++++.+||
T Consensus 235 ~~~de~I~rEeeEIreLE~k~~~Lq 259 (259)
T PF08657_consen 235 VDTDEDIRREEEEIRELERKKRELQ 259 (259)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3566677777777777777777664
No 466
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=41.23 E-value=6.7e+02 Score=29.79 Aligned_cols=64 Identities=16% Similarity=0.089 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 831 NLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVNLLRAKIESLEN 900 (1091)
Q Consensus 831 klEel~~qLqelE~~LeELesQLesLqeS~selEeqLk~~~e~ledLesrL~eLeaElkeLqeKVesLE~ 900 (1091)
....+......++..+..+..|++.+-..+.++|.++-. -.-..|++.++.|.+|+..+..++.
T Consensus 145 ~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~L~~------KF~~vLNeKK~KIR~lq~~L~~~~~ 208 (342)
T PF06632_consen 145 ENEHLQKENERLESEANKLLKQLEKFVNAKEEHEEDLYA------KFVLVLNEKKAKIRELQRLLASAKE 208 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHhHHHHHHHHHHHHHHhhc
Confidence 333444444445555555555665555555555555421 1223455555555555555555443
No 467
>PF10304 DUF2411: Domain of unknown function (DUF2411); InterPro: IPR019414 This entry represents a 38 residue domain of unknown function that is found at the extreme C-terminal end of some HEAT repeats.
Probab=41.16 E-value=27 Score=28.06 Aligned_cols=22 Identities=32% Similarity=0.675 Sum_probs=19.5
Q ss_pred cchhhHHHHhhHHHHHHHhhhh
Q 001374 95 ISAKEDLVKQHTKVAEEAVSGW 116 (1091)
Q Consensus 95 ~~~kd~lvkqh~kvaeeav~gw 116 (1091)
.+..|.+|++||.+|-|.+-+|
T Consensus 15 ~~D~D~lvr~hA~~~Le~Le~~ 36 (36)
T PF10304_consen 15 STDNDDLVREHAQDALEELEAW 36 (36)
T ss_pred HhCCcHHHHHHHHHHHHHHhcC
Confidence 3677999999999999988887
No 468
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=41.05 E-value=2.4e+02 Score=33.35 Aligned_cols=13 Identities=15% Similarity=0.164 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q 001374 911 NAMAKCKELEEQL 923 (1091)
Q Consensus 911 EleaK~~eLEeQL 923 (1091)
+....+.+.+.-+
T Consensus 79 ~r~~~l~DmEa~L 91 (330)
T PF07851_consen 79 ERRCQLFDMEAFL 91 (330)
T ss_pred HHHhhHHHHHhhC
Confidence 3333344444443
No 469
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=41.03 E-value=17 Score=35.93 Aligned_cols=81 Identities=19% Similarity=0.138 Sum_probs=9.2
Q ss_pred HHHHHHHHhHHHHhhhhhhHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 001374 121 AEALALKNHLESVTLSKLTAEDRAAHLDGALKECMRQIRNLKEEHEQKLQDFVLTKTKQWDKIRLEFEAKIANFEQELLR 200 (1091)
Q Consensus 121 ~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLKec~~qLr~~reeqeqki~~~~~~~~~e~e~~~~ELEaKLaElEkeLee 200 (1091)
.|...|+.++..+..+...++.+...|..+| -.++..-++....+-.....-+...+.+...-+..+..++..
T Consensus 39 ~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l-------~~aq~~a~~~~~~A~~eA~~i~~~A~~~a~~i~~~A~~~~~~ 111 (131)
T PF05103_consen 39 RENAELKEEIEELQAQLEELREEEESLQRAL-------IQAQETADEIKAEAEEEAEEIIEEAQKEAEEIIEEARAEAER 111 (131)
T ss_dssp HHHHHHHHHHHCCCCT----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHHhh-------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555566666555555555555554444443 334443333333333333333344444444444444444444
Q ss_pred HHHHHHHH
Q 001374 201 SAAENATL 208 (1091)
Q Consensus 201 lkaEl~aL 208 (1091)
+..+...+
T Consensus 112 l~~~~~~l 119 (131)
T PF05103_consen 112 LREEIEEL 119 (131)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 44333333
No 470
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=41.01 E-value=4.5e+02 Score=32.20 Aligned_cols=71 Identities=17% Similarity=0.186 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhH---------HHHHHHHHHHHHHHhhhhhhcccchhHhhhhhhHHHHHHHHHHHH
Q 001374 885 EAEVNLLRAKIESLENELQDEKMSHH---------NAMAKCKELEEQLQRNENCAVCSSEADENKIKQDRDLAAAAERLA 955 (1091)
Q Consensus 885 eaElkeLqeKVesLE~ELe~ek~~~e---------EleaK~~eLEeQLe~~~~~~lk~q~dkdLKikqEkEIaaAeeKLA 955 (1091)
..++..+..+|..|+.+|..++..+. .....++.|.-+.+- .++.++.|-.-|.
T Consensus 313 sPqV~~l~~rI~aLe~QIa~er~kl~~~~g~~~la~~laeYe~L~le~ef-----------------Ae~~y~sAlaaLE 375 (434)
T PRK15178 313 NPLIPRLSAKIKVLEKQIGEQRNRLSNKLGSQGSSESLSLFEDLRLQSEI-----------------AKARWESALQTLQ 375 (434)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHH
Confidence 35677777777777777777776664 122333333333331 2334555666666
Q ss_pred HHHHHHHHHHHHHHhhc
Q 001374 956 ECQETILLLGKQLKSLR 972 (1091)
Q Consensus 956 EcQeTI~sLEKQLKsLa 972 (1091)
..|.+...--+-|....
T Consensus 376 ~AR~EA~RQ~~YL~~iv 392 (434)
T PRK15178 376 QGKLQALRERQYLLIIS 392 (434)
T ss_pred HHHHHHHhhhhheeeee
Confidence 66666654444444333
No 471
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=40.87 E-value=5.4e+02 Score=28.48 Aligned_cols=112 Identities=15% Similarity=0.239 Sum_probs=59.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HhhhHHHHHHHHHHHHHHHhhhh-
Q 001374 863 AETQLKCMAESYRSLETHAQELEAEVNLLRAKIESLENELQDE-------------KMSHHNAMAKCKELEEQLQRNEN- 928 (1091)
Q Consensus 863 lEeqLk~~~e~ledLesrL~eLeaElkeLqeKVesLE~ELe~e-------------k~~~eEleaK~~eLEeQLe~~~~- 928 (1091)
++..++.+...|+...........++...+..-+.|=.|++.+ ..++.....++.+|=.-|.+.+.
T Consensus 62 Le~~Y~~ln~~ye~s~~~A~~V~~RI~~vE~Va~ALF~EWe~EL~~Y~~~sLR~~S~~kL~~tr~~Y~~L~~aM~~Ae~k 141 (201)
T PF11172_consen 62 LEDKYNALNDEYESSEDAAEEVSDRIDAVEDVADALFDEWEQELDQYSNASLRRASEQKLAETRRRYAQLIKAMRRAESK 141 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444444444444444444444444444444444444332 22344555666666666665554
Q ss_pred --hhcccchhHhhhhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 001374 929 --CAVCSSEADENKIK---QDRDLAAAAERLAECQETILLLGKQLKSLRPQ 974 (1091)
Q Consensus 929 --~~lk~q~dkdLKik---qEkEIaaAeeKLAEcQeTI~sLEKQLKsLa~q 974 (1091)
..+..-.+.++=.+ .=..|+.+.+.+...+..|..|-+++.+--.+
T Consensus 142 m~PVL~~~~D~vL~LKHNLNA~AI~sL~~e~~~~~~di~~Li~~m~~sI~e 192 (201)
T PF11172_consen 142 MQPVLAAFRDQVLYLKHNLNAQAIASLQGEFSSIESDISQLIKEMERSIAE 192 (201)
T ss_pred cChHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222333344111 23478888888888888888888877654333
No 472
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=40.59 E-value=2.1e+02 Score=27.61 Aligned_cols=13 Identities=23% Similarity=0.197 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q 001374 282 HMEGVKKIAKLEA 294 (1091)
Q Consensus 282 ~lEl~KKLaKLEa 294 (1091)
+.++...+..+++
T Consensus 83 i~~le~~~~~~e~ 95 (108)
T PF02403_consen 83 IKELEEQLKELEE 95 (108)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 473
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=40.16 E-value=2.6e+02 Score=35.23 Aligned_cols=58 Identities=21% Similarity=0.334 Sum_probs=27.9
Q ss_pred CCCCccccccccchhhhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 787 VPDDGSIVAAYESETTACKFSLEEFEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKA 851 (1091)
Q Consensus 787 ~~~~~~~~~~~~~~~~~~~~s~EelEqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELes 851 (1091)
+|+...+..+.+.+| .+.+++++..++..+.........+. ....+.+.++++++|+.
T Consensus 148 lp~~~eil~~~~L~T------~~~~~~~~~~~k~~~~~w~~~~~~Lp-~~~~~~~yk~~v~~i~~ 205 (555)
T TIGR03545 148 LPDPRALLKGEDLKT------VETAEEIEKSLKAMQQKWKKRKKDLP-NKQDLEEYKKRLEAIKK 205 (555)
T ss_pred CCCHHHHhccCCCCc------HHHHHHHHHHHHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHh
Confidence 344445555555533 34556666666655555554444333 24444444444444433
No 474
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.06 E-value=7.8e+02 Score=30.07 Aligned_cols=40 Identities=15% Similarity=0.185 Sum_probs=29.5
Q ss_pred HHHhHHHHhhhhhhHHHHHhhhhHHHHHHHHHHHhhhHHH
Q 001374 126 LKNHLESVTLSKLTAEDRAAHLDGALKECMRQIRNLKEEH 165 (1091)
Q Consensus 126 lK~~Le~~~~q~~~le~rv~hLd~aLKec~~qLr~~reeq 165 (1091)
+++--|+.+.|...|=.++.|-+..|..--..+.+++.+=
T Consensus 322 ~~qs~ed~t~q~~~ll~~~q~sE~ll~tlq~~iSqaq~~v 361 (542)
T KOG0993|consen 322 EQQSQEDITVQRAQLLEERQHSEDLLVTLQAEISQAQSEV 361 (542)
T ss_pred HHhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4555567777777888888888888888777777776653
No 475
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=40.06 E-value=4.8e+02 Score=27.66 Aligned_cols=32 Identities=19% Similarity=0.355 Sum_probs=20.2
Q ss_pred hhhhhHHHHHhhhhHHHHHHHHHHHhhhHHHH
Q 001374 135 LSKLTAEDRAAHLDGALKECMRQIRNLKEEHE 166 (1091)
Q Consensus 135 ~q~~~le~rv~hLd~aLKec~~qLr~~reeqe 166 (1091)
.++....++|...=|-+-|..++|-..|++-|
T Consensus 45 rkKmeVrekVq~~LgrveEetkrLa~ireeLE 76 (159)
T PF04949_consen 45 RKKMEVREKVQAQLGRVEEETKRLAEIREELE 76 (159)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34444556666556666677777777777655
No 476
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=39.96 E-value=6.8e+02 Score=29.35 Aligned_cols=78 Identities=23% Similarity=0.259 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001374 224 EEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRG 301 (1091)
Q Consensus 224 eeiErlEgEi~LLkERIenlEKEne~LK~EL~~LqeELEiL~EElE~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~ 301 (1091)
..+++++.++...+.++...+.....+...+..++.+.+....+...++..++.....+....+=+.-|..+-.||..
T Consensus 221 ~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~ 298 (344)
T PF12777_consen 221 QKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWSE 298 (344)
T ss_dssp HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHH
Confidence 334444555555555555555555555555555555555555555555555555555555555555556666655554
No 477
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=39.83 E-value=5.7e+02 Score=28.40 Aligned_cols=40 Identities=18% Similarity=0.296 Sum_probs=29.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccCCCCccc
Q 001374 942 KQDRDLAAAAERLAECQETILLLGKQLKSLRPQSEVIGSPYSER 985 (1091)
Q Consensus 942 kqEkEIaaAeeKLAEcQeTI~sLEKQLKsLa~q~e~~~~~~~~~ 985 (1091)
+.+.+|-.+..|..++...|..|..+|.. .|-++...-+|
T Consensus 126 r~~eel~~a~~K~qemE~RIK~LhaqI~E----KDAmIkVLQqr 165 (205)
T PF12240_consen 126 REEEELHMANRKCQEMENRIKALHAQIAE----KDAMIKVLQQR 165 (205)
T ss_pred cchHHHHHhhhhHHHHHHHHHHHHHHHHH----HHHHHHHHHhh
Confidence 44678999999999999999999988864 35555544444
No 478
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=39.81 E-value=6.2e+02 Score=28.83 Aligned_cols=33 Identities=12% Similarity=0.133 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccCC
Q 001374 944 DRDLAAAAERLAECQETILLLGKQLKSLRPQSEVIGS 980 (1091)
Q Consensus 944 EkEIaaAeeKLAEcQeTI~sLEKQLKsLa~q~e~~~~ 980 (1091)
+.++..+...+...+..+... .=.+|..-.+..
T Consensus 185 ~~~~~~~~~~l~~a~~~l~~~----~i~AP~dG~V~~ 217 (327)
T TIGR02971 185 QAEVKSALEAVQQAEALLELT----YVKAPIDGRVLK 217 (327)
T ss_pred HHHHHHHHHHHHHHHHHHhcC----EEECCCCeEEEE
Confidence 346666666666665554432 345565554433
No 479
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=39.57 E-value=6.2e+02 Score=28.82 Aligned_cols=53 Identities=23% Similarity=0.354 Sum_probs=29.9
Q ss_pred HhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 159 RNLKEEHEQKLQDFVLTKTKQWDKIRLEFEAKIANFEQELLRSAAENATLSRSL 212 (1091)
Q Consensus 159 r~~reeqeqki~~~~~~~~~e~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqL 212 (1091)
..=-++||+--+.- +.+-.-||..-.+...+|..+-.+..+++...+.+...|
T Consensus 84 s~el~~Qe~vF~~q-~~qvNaWDr~LI~ngekI~~Ly~e~~~vk~~qkrLdq~L 136 (254)
T KOG2196|consen 84 SLELEEQERVFLQQ-ATQVNAWDRTLIENGEKISGLYNEVVKVKLDQKRLDQEL 136 (254)
T ss_pred HHHHHHHHHHHHHH-HHHHhHHHHHHHhCcHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 33346666544444 556667777777777776666555555544444444333
No 480
>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=39.55 E-value=7.6e+02 Score=29.82 Aligned_cols=10 Identities=30% Similarity=0.833 Sum_probs=9.1
Q ss_pred CCCCCccCch
Q 001374 5 SWPWKKKSSS 14 (1091)
Q Consensus 5 sW~WkkKSse 14 (1091)
.|-|..-|.+
T Consensus 24 ~WYWgdisRe 33 (464)
T KOG4637|consen 24 EWYWGDISRE 33 (464)
T ss_pred cccccccCHH
Confidence 6999999988
No 481
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=39.34 E-value=2.1e+02 Score=35.20 Aligned_cols=77 Identities=17% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHhhhhhhHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 001374 121 AEALALKNHLESVTLSKLTAEDRAAHLDGALKECMRQIRNLKEEHEQKLQDFVLTKTKQWDKIRLEFEAKIANFEQELLR 200 (1091)
Q Consensus 121 ~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLKec~~qLr~~reeqeqki~~~~~~~~~e~e~~~~ELEaKLaElEkeLee 200 (1091)
+++..++++|..+..+ -..|++--++||.-...-.++|+.+|....++..+-+..+..++..+...+..
T Consensus 66 a~~k~~r~~~~~l~~~-----------N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~ 134 (472)
T TIGR03752 66 AEVKELRKRLAKLISE-----------NEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQ 134 (472)
T ss_pred HHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHH
Q 001374 201 SAAENATL 208 (1091)
Q Consensus 201 lkaEl~aL 208 (1091)
+..++..+
T Consensus 135 l~~~l~~~ 142 (472)
T TIGR03752 135 LQRRLAGV 142 (472)
T ss_pred HHHHHhhc
No 482
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=39.13 E-value=95 Score=27.56 Aligned_cols=52 Identities=15% Similarity=0.198 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHH
Q 001374 831 NLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQ 882 (1091)
Q Consensus 831 klEel~~qLqelE~~LeELesQLesLqeS~selEeqLk~~~e~ledLesrL~ 882 (1091)
++.++++.+..++..+..++.+++.+.+++..++..++.+-..|+....+++
T Consensus 1 Ri~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~lYE~Vs~~iN 52 (55)
T PF05377_consen 1 RIDELENELPRIESSINTVKKENEEISESVEKIEENVKDLLSLYEVVSNQIN 52 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
No 483
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=39.07 E-value=2.2e+02 Score=33.38 Aligned_cols=90 Identities=21% Similarity=0.211 Sum_probs=0.0
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 001374 836 KSQLYETEQ-LLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVNLLRAKIESLENELQDEKMSHHNAMA 914 (1091)
Q Consensus 836 ~~qLqelE~-~LeELesQLesLqeS~selEeqLk~~~e~ledLesrL~eLeaElkeLqeKVesLE~ELe~ek~~~eElea 914 (1091)
...+.++.. ++.|++.....+==+++.+.++-..+-=+..-|...|.+++..+..-.....-+..|++.++..|.-+..
T Consensus 110 EAs~~e~~Dskv~EveekykkaMvsnaQLDNEKsnl~YqVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~ 189 (405)
T KOG2010|consen 110 EASLSELRDSKVSEVEEKYKKAMVSNAQLDNEKNNLIYQVDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQH 189 (405)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHhhcccccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHh
Q 001374 915 KCKELEEQLQR 925 (1091)
Q Consensus 915 K~~eLEeQLe~ 925 (1091)
+..+|++.|..
T Consensus 190 ~~~elKe~l~Q 200 (405)
T KOG2010|consen 190 KMEELKEGLRQ 200 (405)
T ss_pred HHHHHHHHHHH
No 484
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=38.83 E-value=9.2e+02 Score=30.56 Aligned_cols=154 Identities=11% Similarity=0.035 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHH---------
Q 001374 815 KLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELE--------- 885 (1091)
Q Consensus 815 EsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selEeqLk~~~e~ledLesrL~eLe--------- 885 (1091)
+.=+.....-..+++.-+..++......-+.|.+++.++.++.+--+.++..++...+.-+++..+++.+.
T Consensus 573 EqYi~~~dlV~~e~qrH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~~~~lp~ 652 (741)
T KOG4460|consen 573 EQYILKQDLVKEEIQRHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSFHSELPV 652 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccCCc
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhcccchhHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 001374 886 --AEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNENCAVCSSEADENKIKQDRDLAAAAERLAECQETILL 963 (1091)
Q Consensus 886 --aElkeLqeKVesLE~ELe~ek~~~eEleaK~~eLEeQLe~~~~~~lk~q~dkdLKikqEkEIaaAeeKLAEcQeTI~s 963 (1091)
.--......+-.+-.+++.+.+.++++.++..+-+.-+..+-....+.+...- +++..-+.+-|++.-..|..
T Consensus 653 l~~AErdFk~Elq~~~~~~~~L~~~iET~~~~~~KQ~~H~~~v~~al~K~~Y~l~-----~~Q~~~iqsiL~~L~~~i~~ 727 (741)
T KOG4460|consen 653 LSDAERDFKKELQLIPDQLRHLGNAIETVTMKKDKQQQHMEKVLSALPKPTYILS-----AYQRKCIQSILKELGEHIRE 727 (741)
T ss_pred chhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccc-----HHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhcC
Q 001374 964 LGKQLKSLRP 973 (1091)
Q Consensus 964 LEKQLKsLa~ 973 (1091)
.-++.|..+.
T Consensus 728 ~~k~VK~i~~ 737 (741)
T KOG4460|consen 728 MVKQVKDIRN 737 (741)
T ss_pred HHHHHHHHHH
No 485
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=38.68 E-value=4.8e+02 Score=27.24 Aligned_cols=102 Identities=17% Similarity=0.215 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 001374 814 LKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVNLLRA 893 (1091)
Q Consensus 814 LEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selEeqLk~~~e~ledLesrL~eLeaElkeLqe 893 (1091)
|-.--.....+|+.+...+....+.-.++...+..+..-+...+. +.+.-...+......|...- +..++.
T Consensus 27 L~k~~~~v~~~i~~L~~~L~~~~n~t~~~~~~v~~i~~~~~~~q~-------~~~~n~~i~~~~s~~l~~~~--~~~~e~ 97 (146)
T PF08702_consen 27 LDKYERDVDKDIQELENLLDQISNSTSEAFEYVKNIKDSLRPRQK-------QAKPNDNIYNQYSKSLRKMI--IYILET 97 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH--CHHHHH
T ss_pred HHHHccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcccc-------ccCCcccHHHHHHHHHHHHH--HHHHHH
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 001374 894 KIESLENELQDEKMSHHNAMAKCKELEEQLQ 924 (1091)
Q Consensus 894 KVesLE~ELe~ek~~~eEleaK~~eLEeQLe 924 (1091)
++.....-|..++.-+.....+|..|+..+.
T Consensus 98 ~i~~~~~~I~~Lq~~~~~~~~ki~~Le~~i~ 128 (146)
T PF08702_consen 98 KIINQPSNIRVLQNILRSNRQKIQRLEQDID 128 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHhHHHHHHHHHHHHHHHHHHHHHHHH
No 486
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=38.40 E-value=5.8e+02 Score=28.09 Aligned_cols=94 Identities=13% Similarity=0.206 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 001374 810 EFEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVN 889 (1091)
Q Consensus 810 elEqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selEeqLk~~~e~ledLesrL~eLeaElk 889 (1091)
.|.+--..+...+.+...+..+..-+.-.|...+..+..|+..|.-.+..-...-..-.....+...|+.+-....+++.
T Consensus 92 ~F~~Qt~~LA~~eirR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~ 171 (192)
T PF11180_consen 92 DFAQQTARLADVEIRRAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLR 171 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHH
Q 001374 890 LLRAKIESLENELQ 903 (1091)
Q Consensus 890 eLqeKVesLE~ELe 903 (1091)
.++..|..|+.+..
T Consensus 172 ~lQ~qv~~Lq~q~~ 185 (192)
T PF11180_consen 172 QLQRQVRQLQRQAN 185 (192)
T ss_pred HHHHHHHHHHHHhc
No 487
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=38.39 E-value=6.8e+02 Score=28.92 Aligned_cols=124 Identities=17% Similarity=0.189 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH----------HHHHHHHHHHH
Q 001374 186 EFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCE----------REINSAKYELH 255 (1091)
Q Consensus 186 ELEaKLaElEkeLeelkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIenlE----------KEne~LK~EL~ 255 (1091)
.++.++..+++++...++++......+...+..+......+...+.++...+...+... .+....+.++.
T Consensus 83 ~~~~~l~~a~a~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~a~~~l~~a~~~~~R~~~L~~~g~vS~~~~~~a~~~~~ 162 (346)
T PRK10476 83 PYELTVAQAQADLALADAQIMTTQRSVDAERSNAASANEQVERARANAKLATRTLERLEPLLAKGYVSAQQVDQARTAQR 162 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhccCCC
Q 001374 256 IVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRL-RGLVRKKLPG 309 (1091)
Q Consensus 256 ~LqeELEiL~EElE~s~qsaeal~KQ~lEl~KKLaKLEaEcqrL-r~l~rk~lpg 309 (1091)
..+.+++....++......+..+......+....+.++.....+ ...+|-...|
T Consensus 163 ~a~~~l~~a~~~~~~~~~~~~~~~~~~a~~~~~~a~l~~a~~~l~~~~I~AP~dG 217 (346)
T PRK10476 163 DAEVSLNQALLQAQAAAAAVGGVDALVAQRAAREAALAIAELHLEDTTVRAPFDG 217 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCEEECCCCc
No 488
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=38.20 E-value=4.4e+02 Score=26.68 Aligned_cols=75 Identities=23% Similarity=0.165 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 192 ANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNE 266 (1091)
Q Consensus 192 aElEkeLeelkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIenlEKEne~LK~EL~~LqeELEiL~E 266 (1091)
.+...-.+.+..++..++-.+...+-.+.-...+.+.++....-+...++...+++..|+.+|...+..+..+.+
T Consensus 42 e~~~~~~e~~l~~l~~~e~~~~k~q~~~~~n~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ak~~r~~k~e 116 (139)
T PF05615_consen 42 EESQFLYERLLKELAQFEFSILKSQLILEMNKRERENYEQLNEEIEQEIEQAKKEIEELKEELEEAKRVRQNKEE 116 (139)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 489
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=37.95 E-value=5.8e+02 Score=27.99 Aligned_cols=92 Identities=21% Similarity=0.300 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 001374 837 SQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVNLLRAKIESLENELQDEKMSHHNAMAKC 916 (1091)
Q Consensus 837 ~qLqelE~~LeELesQLesLqeS~selEeqLk~~~e~ledLesrL~eLeaElkeLqeKVesLE~ELe~ek~~~eEleaK~ 916 (1091)
..+......+.+|+.+|+........+-..+.........-+.+-.++..++..+...+..++.++.+.+.+--..-.+.
T Consensus 74 ~a~~~~ks~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~e~dpqv~~k~ 153 (203)
T KOG3433|consen 74 EAICDRKSVLQELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQETDPQVFEKK 153 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHH
Q ss_pred HHHHHHHHhhhh
Q 001374 917 KELEEQLQRNEN 928 (1091)
Q Consensus 917 ~eLEeQLe~~~~ 928 (1091)
.++...+.....
T Consensus 154 ~~~~K~~~eaan 165 (203)
T KOG3433|consen 154 VHLEKTMAEAAN 165 (203)
T ss_pred HHHHHHHHHHHh
No 490
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=37.74 E-value=4.9e+02 Score=27.07 Aligned_cols=80 Identities=13% Similarity=0.106 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001374 201 SAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANK 280 (1091)
Q Consensus 201 lkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIenlEKEne~LK~EL~~LqeELEiL~EElE~s~qsaeal~K 280 (1091)
...++..+...++..+..+......+....+.|..+.......+.....|...+......+..++..++.+...-+.+..
T Consensus 17 ~~~~~~~l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~lR~ 96 (135)
T TIGR03495 17 QSQRLRNARADLERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKRENEDLRR 96 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH
No 491
>PHA03011 hypothetical protein; Provisional
Probab=37.72 E-value=1.7e+02 Score=28.97 Aligned_cols=60 Identities=28% Similarity=0.348 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 001374 864 ETQLKCMAESYRSLETHAQELEAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQL 923 (1091)
Q Consensus 864 EeqLk~~~e~ledLesrL~eLeaElkeLqeKVesLE~ELe~ek~~~eEleaK~~eLEeQL 923 (1091)
+.++....+.++++-.|++.+..|...+.+.+.-++.=++.-.....-+.+++.+|++++
T Consensus 56 ~GD~Nai~e~ldeL~~qYN~L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~ni 115 (120)
T PHA03011 56 EGDINAIIEILDELIAQYNELLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKENI 115 (120)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH
No 492
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=37.65 E-value=2.6e+02 Score=36.98 Aligned_cols=125 Identities=17% Similarity=0.157 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 189 AKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEK 268 (1091)
Q Consensus 189 aKLaElEkeLeelkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIenlEKEne~LK~EL~~LqeELEiL~EEl 268 (1091)
.+...+..++.++...+...+.-...............++.+....-+..++..++.+..+|..++.....
T Consensus 467 ~~q~~ls~el~el~k~l~~Ke~l~rr~~~~~~~~~~~~~~~e~~~~~le~e~~~le~E~~~l~~el~~~~~--------- 537 (913)
T KOG0244|consen 467 QKQGSLSGELSELEKRLAEKEPLTRRKAYEKAEKSKAKEQYESDSGTLEAEKSPLESERSRLRNELNVFNR--------- 537 (913)
T ss_pred HHHhhhhHHHHHHHhhhccccHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHhcccccccHHHHHHHHhhhH---------
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHhhh
Q 001374 269 NMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLVRKKLPGPAALAQMKMEVESL 323 (1091)
Q Consensus 269 E~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l~rk~lpgpaa~a~mk~ev~~l 323 (1091)
......+.-.+++..+...+..++.-+..-..|++.+.---.+.++.+.|+..+
T Consensus 538 -~~~kl~eer~qklk~le~q~s~lkk~l~~~~~l~~~~~~~~~~~~kl~~ei~~~ 591 (913)
T KOG0244|consen 538 -LAAKLGEERVQKLKSLETQISLLKKKLSSQRKLIKPKPKSEGIRAKLLQEIHIA 591 (913)
T ss_pred -HHHHhhhHHHHHHHHHHHHHHHHHHhhHHHHHHhccchhhHHHHHHHHHHHHHH
No 493
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=37.64 E-value=4.5e+02 Score=26.62 Aligned_cols=97 Identities=15% Similarity=0.102 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH---------------HHHHHHHHHHHHHHHHHHH
Q 001374 201 SAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCERE---------------INSAKYELHIVSKELEIRN 265 (1091)
Q Consensus 201 lkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIenlEKE---------------ne~LK~EL~~LqeELEiL~ 265 (1091)
+...+...-..++.++..+......+.+++.++.-.+-=++.+..- ...|.+--....++++.+.
T Consensus 3 ~~~kmee~~~kyq~LQk~l~k~~~~rqkle~qL~Enk~V~~Eldlle~d~~VYKliGpvLvkqel~EAr~nV~kRlefI~ 82 (120)
T KOG3478|consen 3 LQKKMEEEANKYQNLQKELEKYVESRQKLETQLQENKIVLEELDLLEEDSNVYKLIGPVLVKQELEEARTNVGKRLEFIS 82 (120)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccchHHHHhcchhhHHHHHHHHhhHHHHHHHHH
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 266 EEKNMSMRSAEAANKQHMEGVKKIAKLEAECQ 297 (1091)
Q Consensus 266 EElE~s~qsaeal~KQ~lEl~KKLaKLEaEcq 297 (1091)
.|+..+..++...+++.......+.++.+.|+
T Consensus 83 ~Eikr~e~~i~d~q~e~~k~R~~v~k~Q~~~q 114 (120)
T KOG3478|consen 83 KEIKRLENQIRDSQEEFEKQREAVIKLQQAAQ 114 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 494
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=37.64 E-value=4.8e+02 Score=26.91 Aligned_cols=97 Identities=22% Similarity=0.288 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 001374 831 NLEMTKSQLYETEQLLAEVKAQL-----ASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVNLLRAKIESLENEL-QD 904 (1091)
Q Consensus 831 klEel~~qLqelE~~LeELesQL-----esLqeS~selEeqLk~~~e~ledLesrL~eLeaElkeLqeKVesLE~EL-e~ 904 (1091)
.++.--...+.+...+.+++.++ ..+......+..+++.+..........+......+..+......+..|. ..
T Consensus 2 ~~~~e~~~~~~~~a~~~e~e~~~~~~~~~~l~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~kl~~E~~~~ 81 (136)
T PF04871_consen 2 ELKSELEEEKQLAAKILELETKLKSQAESSLEQENKRLEAEEKELKEAEQAAEAELEELASEVKELEAEKEKLKEEARKE 81 (136)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HHhhhHHHHHHHHHHHHHHHhhh
Q 001374 905 EKMSHHNAMAKCKELEEQLQRNE 927 (1091)
Q Consensus 905 ek~~~eEleaK~~eLEeQLe~~~ 927 (1091)
.+..+.+|..=..++..++.++.
T Consensus 82 ~q~EldDLL~ll~Dle~K~~kyk 104 (136)
T PF04871_consen 82 AQSELDDLLVLLGDLEEKRKKYK 104 (136)
T ss_pred hhhhHHHHHHHHHhHHHHHHHHH
No 495
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=37.61 E-value=3.4e+02 Score=30.65 Aligned_cols=85 Identities=16% Similarity=0.199 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 820 NLATDLARCTENLEMTKSQLYETE-QLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVNLLRAKIESL 898 (1091)
Q Consensus 820 elE~eLee~~eklEel~~qLqelE-~~LeELesQLesLqeS~selEeqLk~~~e~ledLesrL~eLeaElkeLqeKVesL 898 (1091)
.++.+|+..--..+.+..++-++. ..+.-|..+++.+.-.+..+.-.=+--.+-...+-....+++.++..++.++++|
T Consensus 161 ~l~~eLqkr~~~v~~l~~q~~k~~~~qv~~in~qlErLRL~krrlQl~g~Ld~~~q~~~~ae~seLq~r~~~l~~~L~~L 240 (289)
T COG4985 161 PLERELQKRLLEVETLRDQVDKMVEQQVRVINSQLERLRLEKRRLQLNGQLDDEFQQHYVAEKSELQKRLAQLQTELDAL 240 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH
Q 001374 899 ENELQD 904 (1091)
Q Consensus 899 E~ELe~ 904 (1091)
..|++.
T Consensus 241 ~~e~~r 246 (289)
T COG4985 241 RAELER 246 (289)
T ss_pred hhhhhh
No 496
>PRK10698 phage shock protein PspA; Provisional
Probab=37.34 E-value=6.1e+02 Score=28.09 Aligned_cols=184 Identities=12% Similarity=0.094 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHhhhhhhHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001374 117 EKAEAEALALKNHLESVTLSKLTAEDRAAHLDGALKECMRQIRNLKEEHEQKLQDFVLTKTKQWDKIRLEFEAKIANFEQ 196 (1091)
Q Consensus 117 ekae~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLKec~~qLr~~reeqeqki~~~~~~~~~e~e~~~~ELEaKLaElEk 196 (1091)
+|||.=...+++-+.+.......+..=++..=+.-|.-.+++..+...-+..-.-|...-.+-=|.+-.+.=.+...+..
T Consensus 20 dkaEDP~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~ 99 (222)
T PRK10698 20 EKAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTD 99 (222)
T ss_pred HhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhH
Q 001374 197 ELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKY----ELHIVSKELEIRNEEKNMSM 272 (1091)
Q Consensus 197 eLeelkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIenlEKEne~LK~----EL~~LqeELEiL~EElE~s~ 272 (1091)
.+..++.++......+..+...+..|...+.....+...|..|.........--+. .....-..++...+.+....
T Consensus 100 ~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~~~~a~~~f~rmE~ki~~~E 179 (222)
T PRK10698 100 LIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDSGKLDEAMARFESFERRIDQME 179 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHH
Q ss_pred HHHHH--------HHHHHHHHHHHHHHHHHHHHHHhh
Q 001374 273 RSAEA--------ANKQHMEGVKKIAKLEAECQRLRG 301 (1091)
Q Consensus 273 qsaea--------l~KQ~lEl~KKLaKLEaEcqrLr~ 301 (1091)
-.+++ +..+...+... ..++.++..|+.
T Consensus 180 a~aea~~~~~~~~l~~e~~~le~~-~~ve~ELa~LK~ 215 (222)
T PRK10698 180 AEAESHGFGKQKSLDQQFAELKAD-DEISEQLAALKA 215 (222)
T ss_pred HHHhHhhccCCCCHHHHHHHhhcc-chHHHHHHHHHH
No 497
>PF15369 KIAA1328: Uncharacterised protein KIAA1328
Probab=37.25 E-value=4.7e+02 Score=30.87 Aligned_cols=81 Identities=11% Similarity=0.109 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 001374 214 ERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLE 293 (1091)
Q Consensus 214 elqeeI~EL~eeiErlEgEi~LLkERIenlEKEne~LK~EL~~LqeELEiL~EElE~s~qsaeal~KQ~lEl~KKLaKLE 293 (1091)
+....|..|.++++++..+..+..+|+. .+...++..|..+.++-+.+..+++.+.....+.+.-+.=+++-|.+-.
T Consensus 5 ~dk~ri~~li~~la~~~~~~e~~~~~~~---~~~~~~e~~~~~l~~~~~~~~~~~~~~~~qyrecqell~lyq~ylseqq 81 (328)
T PF15369_consen 5 EDKRRIANLIKELARVSEEKEVTEERLK---AEQESFEKKIRQLEEQNELIIKEREDLQQQYRECQELLSLYQKYLSEQQ 81 (328)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHH---HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHH
Q 001374 294 AECQ 297 (1091)
Q Consensus 294 aEcq 297 (1091)
+.+.
T Consensus 82 ~kl~ 85 (328)
T PF15369_consen 82 EKLT 85 (328)
T ss_pred HHHh
No 498
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=37.08 E-value=2.1e+02 Score=28.68 Aligned_cols=62 Identities=18% Similarity=0.329 Sum_probs=0.0
Q ss_pred HHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH
Q 001374 156 RQIRNLKEEHEQKLQDFVLTKTKQWDKIRLEFEAKIANF--------EQELLRSAAENATLSRSLQERSN 217 (1091)
Q Consensus 156 ~qLr~~reeqeqki~~~~~~~~~e~e~~~~ELEaKLaEl--------EkeLeelkaEl~aLeeqLEelqe 217 (1091)
..+..++++....+.++.......|+++...++.++..+ ..++..+...+..|...++.+.+
T Consensus 48 e~~~~~~e~~~~~~~~~~~~~~~~~~~le~~~~~~v~~~L~~lg~~tk~ev~~L~~RI~~Le~~l~~l~~ 117 (118)
T TIGR01837 48 ESVDAAREEVKTALEQTRDQVQRNWDKLEKAFDERVEQALNRLNIPSREEIEALSAKIEQLAVQVEELRR 117 (118)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
No 499
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=37.06 E-value=6.7e+02 Score=28.47 Aligned_cols=118 Identities=11% Similarity=0.087 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH----------HHHHHHHHHH
Q 001374 186 EFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCER----------EINSAKYELH 255 (1091)
Q Consensus 186 ELEaKLaElEkeLeelkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIenlEK----------Ene~LK~EL~ 255 (1091)
.++.++..++.++..+.+++..+...+..++..+..+...++..+.++...+..++.... +.+..+..+.
T Consensus 77 ~~~~~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~l~~a~~~~~r~~~L~~~g~is~~~~~~a~~~~~ 156 (334)
T TIGR00998 77 NAELALAKAEANLAALVRQTKQLEITVQQLQAKVESLKIKLEQAREKLLQAELDLRRRVPLFKKGLISREELDHARKALL 156 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHCCCcCHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 001374 256 IVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLVRK 305 (1091)
Q Consensus 256 ~LqeELEiL~EElE~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l~rk 305 (1091)
..+.+++....+ ...................+..++..+...+..+.+
T Consensus 157 ~a~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~~~l~~ 204 (334)
T TIGR00998 157 SAKAALNAAIQE--QLNANQALVRGTPLKKQPAVQEAKERLKTAWLALKR 204 (334)
T ss_pred HHHHHHHHHHHH--HHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhhC
No 500
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=36.96 E-value=2.8e+02 Score=31.57 Aligned_cols=117 Identities=17% Similarity=0.250 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 148 DGALKECMRQIRNLKEEHEQKLQDFVLTKTKQWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKS 227 (1091)
Q Consensus 148 d~aLKec~~qLr~~reeqeqki~~~~~~~~~e~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLEelqeeI~EL~eeiE 227 (1091)
++-|-...+||+..|--.+...+.+ .+..+-.+..+.. +.++.++.-.+..|...+..-.+.|..+.+...
T Consensus 185 e~~l~dkekEl~sfK~sEeeNar~V-~kAnsVldRmk~a--------EaqvneLEvsN~DLsaKLe~gknaY~~~ieke~ 255 (311)
T PF04642_consen 185 EDQLSDKEKELESFKRSEEENARAV-EKANSVLDRMKEA--------EAQVNELEVSNIDLSAKLEPGKNAYLAAIEKEN 255 (311)
T ss_pred ccccccHHHHHHHHhhhhhhhHHHH-HHHHHHHHHHHHH--------HhhhhheecccHHHHHhhcCCcchHHHHHhhHH
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 001374 228 QAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQH 282 (1091)
Q Consensus 228 rlEgEi~LLkERIenlEKEne~LK~EL~~LqeELEiL~EElE~s~qsaeal~KQ~ 282 (1091)
++..++..+++|+..++...+.+ +.-. +.+++...+.++..-...+
T Consensus 256 q~raeL~acEEkl~kmeE~Qa~~------l~~a---R~~errkvraqf~dfssky 301 (311)
T PF04642_consen 256 QARAELNACEEKLKKMEEEQAEM------LRAA---RTEERRKVRAQFHDFSSKY 301 (311)
T ss_pred HHHHHHHHHHHHHhcccHHHHHH------HHHH---HHHHHHHHHHHHHHhHHhh
Done!