Query 001374
Match_columns 1091
No_of_seqs 265 out of 292
Neff 4.8
Searched_HMMs 29240
Date Tue Mar 26 00:51:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001374.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001374hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 98.6 0.00014 4.9E-09 75.0 34.3 12 77-88 25-36 (284)
2 1i84_S Smooth muscle myosin he 98.0 7.4E-06 2.5E-10 105.3 8.1 9 3-11 834-842 (1184)
3 1i84_S Smooth muscle myosin he 97.8 2.3E-05 7.8E-10 100.8 8.8 29 123-151 866-894 (1184)
4 3na7_A HP0958; flagellar bioge 97.3 0.016 5.5E-07 62.5 20.5 159 810-974 12-172 (256)
5 2v71_A Nuclear distribution pr 97.0 0.043 1.5E-06 57.1 19.1 130 795-927 3-136 (189)
6 3na7_A HP0958; flagellar bioge 96.9 0.055 1.9E-06 58.3 20.0 12 814-825 37-48 (256)
7 2efr_A General control protein 96.7 0.14 4.7E-06 51.9 19.5 131 810-964 22-152 (155)
8 2efr_A General control protein 96.7 0.43 1.5E-05 48.3 22.9 27 946-972 127-153 (155)
9 3vkg_A Dynein heavy chain, cyt 96.6 0.17 5.6E-06 71.0 26.1 87 185-271 2017-2103(3245)
10 3vkg_A Dynein heavy chain, cyt 96.6 0.19 6.4E-06 70.5 26.1 52 121-172 1913-1964(3245)
11 2fxo_A Myosin heavy chain, car 96.6 0.17 5.8E-06 49.5 18.9 110 809-925 13-122 (129)
12 3o0z_A RHO-associated protein 96.5 0.4 1.4E-05 49.0 21.9 143 72-261 6-152 (168)
13 2dfs_A Myosin-5A; myosin-V, in 96.4 0.13 4.4E-06 65.9 21.3 118 182-302 921-1045(1080)
14 2dfs_A Myosin-5A; myosin-V, in 96.3 0.15 5E-06 65.4 21.1 15 137-151 923-937 (1080)
15 2fxo_A Myosin heavy chain, car 96.1 0.51 1.7E-05 46.1 19.4 105 824-928 14-118 (129)
16 2v71_A Nuclear distribution pr 95.7 2.3 8E-05 44.3 24.9 122 175-302 38-159 (189)
17 3u1c_A Tropomyosin alpha-1 cha 95.7 0.23 7.9E-06 46.7 14.4 90 811-900 11-100 (101)
18 3oja_B Anopheles plasmodium-re 95.3 0.22 7.5E-06 58.8 15.7 75 227-301 505-579 (597)
19 3u1c_A Tropomyosin alpha-1 cha 95.1 0.71 2.4E-05 43.4 15.6 94 149-243 5-98 (101)
20 3o0z_A RHO-associated protein 95.0 3.6 0.00012 42.1 23.3 22 140-161 4-25 (168)
21 3u59_A Tropomyosin beta chain; 95.0 0.44 1.5E-05 44.6 13.9 89 811-899 11-99 (101)
22 3u59_A Tropomyosin beta chain; 94.6 1 3.4E-05 42.2 15.1 94 149-243 5-98 (101)
23 2b9c_A Striated-muscle alpha t 94.5 0.099 3.4E-06 52.4 8.4 109 814-929 8-116 (147)
24 2ocy_A RAB guanine nucleotide 93.5 5.5 0.00019 40.3 18.8 17 130-146 8-24 (154)
25 2ocy_A RAB guanine nucleotide 92.4 7 0.00024 39.5 17.8 95 880-974 45-144 (154)
26 3tnu_B Keratin, type II cytosk 92.2 1.1 3.9E-05 43.5 11.6 28 886-913 75-102 (129)
27 3ol1_A Vimentin; structural ge 91.7 2.9 9.9E-05 40.3 13.7 98 815-922 19-116 (119)
28 3tnu_A Keratin, type I cytoske 91.7 1.1 3.6E-05 43.9 10.8 30 886-915 77-106 (131)
29 3ghg_A Fibrinogen alpha chain; 91.6 1.7 5.7E-05 51.2 13.8 26 158-183 51-76 (562)
30 1ic2_A Tropomyosin alpha chain 90.6 3.1 0.0001 37.5 11.8 64 817-880 7-70 (81)
31 4gkw_A Spindle assembly abnorm 90.3 11 0.00038 37.0 15.9 102 185-304 14-115 (167)
32 3oja_A Leucine-rich immune mol 90.1 2.1 7.3E-05 49.4 13.2 51 217-267 421-471 (487)
33 1ic2_A Tropomyosin alpha chain 90.0 3.2 0.00011 37.3 11.5 65 853-917 8-72 (81)
34 3ol1_A Vimentin; structural ge 89.8 14 0.00048 35.5 16.5 38 187-224 18-55 (119)
35 3mq9_A Bone marrow stromal ant 89.6 4.8 0.00016 46.2 15.6 96 147-261 371-466 (471)
36 1deq_A Fibrinogen (alpha chain 89.1 15 0.00051 41.8 18.3 60 227-286 116-175 (390)
37 3swk_A Vimentin; cytoskeleton, 87.9 5.3 0.00018 36.5 11.4 32 893-924 49-80 (86)
38 2eqb_B RAB guanine nucleotide 87.6 8.3 0.00028 36.2 12.6 48 809-856 12-59 (97)
39 2b9c_A Striated-muscle alpha t 87.4 25 0.00086 35.1 17.1 86 181-266 37-122 (147)
40 1deq_A Fibrinogen (alpha chain 87.3 9.3 0.00032 43.5 15.2 99 812-910 63-165 (390)
41 3q8t_A Beclin-1; autophagy, AT 87.2 15 0.0005 34.3 14.2 35 878-912 59-93 (96)
42 3hnw_A Uncharacterized protein 86.9 19 0.00063 35.7 15.6 27 238-264 103-129 (138)
43 3q8t_A Beclin-1; autophagy, AT 86.8 20 0.00068 33.4 15.1 72 207-278 22-93 (96)
44 1l8d_A DNA double-strand break 86.6 10 0.00036 35.3 13.1 33 824-856 11-43 (112)
45 3ghg_A Fibrinogen alpha chain; 86.4 7.5 0.00026 45.8 14.1 41 256-296 114-154 (562)
46 2i1j_A Moesin; FERM, coiled-co 86.2 0.79 2.7E-05 55.0 6.4 118 183-300 329-446 (575)
47 3mq7_A Bone marrow stromal ant 85.8 22 0.00076 34.3 14.6 35 881-915 73-107 (121)
48 2v4h_A NF-kappa-B essential mo 85.6 17 0.0006 34.7 13.8 73 198-274 26-98 (110)
49 3swk_A Vimentin; cytoskeleton, 85.4 17 0.00059 33.1 13.4 78 187-264 5-82 (86)
50 3iv1_A Tumor susceptibility ge 85.4 7.2 0.00025 35.3 10.5 64 181-244 10-73 (78)
51 2jee_A YIIU; FTSZ, septum, coi 85.3 10 0.00035 34.6 11.5 45 220-264 30-74 (81)
52 1x79_B RAB GTPase binding effe 85.2 15 0.0005 35.4 13.2 73 176-262 4-76 (112)
53 3tnu_B Keratin, type II cytosk 84.4 23 0.0008 34.2 14.8 20 886-905 103-122 (129)
54 3tnu_A Keratin, type I cytoske 84.3 16 0.00055 35.5 13.6 20 886-905 105-124 (131)
55 3bas_A Myosin heavy chain, str 84.2 16 0.00056 33.4 12.8 16 810-825 15-30 (89)
56 2v4h_A NF-kappa-B essential mo 83.2 11 0.00039 36.0 11.4 30 810-839 25-54 (110)
57 3bas_A Myosin heavy chain, str 82.9 17 0.00058 33.3 12.3 46 813-858 11-56 (89)
58 1m1j_B Fibrinogen beta chain; 82.8 23 0.00079 41.5 16.3 6 772-777 67-72 (464)
59 2zqm_A Prefoldin beta subunit 81.9 25 0.00084 32.8 13.5 29 821-849 11-39 (117)
60 3mq7_A Bone marrow stromal ant 81.8 36 0.0012 32.9 14.2 32 187-218 30-61 (121)
61 1l8d_A DNA double-strand break 81.5 17 0.00058 33.9 12.2 25 832-856 12-36 (112)
62 2eqb_B RAB guanine nucleotide 81.1 36 0.0012 32.0 13.8 24 275-298 71-94 (97)
63 2xzr_A Immunoglobulin-binding 80.8 37 0.0013 31.8 17.4 87 218-304 21-107 (114)
64 3mq9_A Bone marrow stromal ant 80.5 48 0.0017 37.9 18.0 27 274-300 444-470 (471)
65 1fxk_A Prefoldin; archaeal pro 80.0 19 0.00065 33.1 11.8 29 895-923 74-102 (107)
66 3a7p_A Autophagy protein 16; c 80.0 17 0.00057 36.7 11.9 60 845-904 69-128 (152)
67 1m1j_B Fibrinogen beta chain; 80.0 42 0.0014 39.4 17.2 7 769-775 75-81 (464)
68 1d7m_A Cortexillin I; coiled-c 78.0 43 0.0015 30.9 15.9 62 140-213 2-63 (101)
69 2v66_B Nuclear distribution pr 77.4 52 0.0018 31.6 16.4 92 814-905 8-103 (111)
70 3s4r_A Vimentin; alpha-helix, 77.3 44 0.0015 30.8 13.2 35 817-851 10-44 (93)
71 2e7s_A RAB guanine nucleotide 76.9 5.9 0.0002 39.2 7.5 96 831-926 33-129 (135)
72 2zqm_A Prefoldin beta subunit 76.8 42 0.0015 31.2 13.4 28 897-924 81-108 (117)
73 2e7s_A RAB guanine nucleotide 76.8 2 6.8E-05 42.5 4.2 88 886-973 39-131 (135)
74 3iox_A AGI/II, PA; alpha helix 75.2 78 0.0027 37.3 17.3 33 184-216 4-36 (497)
75 3uux_B Mitochondrial division 74.2 20 0.00068 38.5 11.2 72 195-266 155-226 (242)
76 3cvf_A Homer-3, homer protein 74.1 18 0.00061 32.8 9.3 20 196-215 13-32 (79)
77 4h22_A Leucine-rich repeat fli 73.3 24 0.00081 33.5 10.2 67 240-306 18-84 (103)
78 3a7p_A Autophagy protein 16; c 72.6 45 0.0015 33.6 12.6 67 190-256 69-135 (152)
79 3s4r_A Vimentin; alpha-helix, 72.5 53 0.0018 30.3 12.4 34 825-858 11-44 (93)
80 2i1j_A Moesin; FERM, coiled-co 71.9 5.8 0.0002 47.6 7.4 162 809-973 300-461 (575)
81 1go4_E MAD1 (mitotic arrest de 71.3 1.9 6.4E-05 40.8 2.3 75 232-306 13-94 (100)
82 3cve_A Homer protein homolog 1 71.0 40 0.0014 30.1 10.6 20 885-904 41-60 (72)
83 2v66_B Nuclear distribution pr 69.1 83 0.0029 30.2 17.6 65 236-300 40-104 (111)
84 3jsv_C NF-kappa-B essential mo 68.9 31 0.0011 32.2 9.8 73 198-274 4-76 (94)
85 1gk4_A Vimentin; intermediate 67.7 70 0.0024 28.8 12.6 46 810-858 2-47 (84)
86 3jsv_C NF-kappa-B essential mo 67.4 36 0.0012 31.8 9.9 28 897-924 51-78 (94)
87 4gkw_A Spindle assembly abnorm 67.2 1E+02 0.0034 30.4 22.5 75 141-220 10-84 (167)
88 4h22_A Leucine-rich repeat fli 66.2 41 0.0014 31.9 10.2 28 898-925 56-83 (103)
89 3cvf_A Homer-3, homer protein 66.0 39 0.0013 30.6 9.7 64 162-226 8-71 (79)
90 1fxk_A Prefoldin; archaeal pro 66.0 80 0.0027 28.8 13.2 28 888-915 74-101 (107)
91 1x8y_A Lamin A/C; structural p 65.4 43 0.0015 30.4 10.1 46 810-858 4-49 (86)
92 1fxk_C Protein (prefoldin); ar 65.0 99 0.0034 29.5 13.9 35 885-919 94-128 (133)
93 1m1j_A Fibrinogen alpha subuni 64.1 1.2E+02 0.0041 35.5 15.5 130 795-928 48-191 (491)
94 1m1j_C Fibrinogen gamma chain; 63.7 94 0.0032 35.9 14.8 36 892-927 97-132 (409)
95 1cii_A Colicin IA; bacteriocin 62.8 2.4E+02 0.0081 33.2 19.0 39 176-225 347-385 (602)
96 1m1j_C Fibrinogen gamma chain; 62.2 92 0.0032 35.9 14.4 38 869-906 88-125 (409)
97 1m1j_A Fibrinogen alpha subuni 62.1 2.1E+02 0.0072 33.5 17.0 68 236-303 95-162 (491)
98 3i00_A HIP-I, huntingtin-inter 62.0 72 0.0025 30.9 11.4 63 191-256 17-79 (120)
99 1f5n_A Interferon-induced guan 61.8 1.9E+02 0.0066 34.7 17.7 30 130-159 461-490 (592)
100 1x79_B RAB GTPase binding effe 60.8 1.2E+02 0.0041 29.1 14.2 62 809-873 6-67 (112)
101 3efg_A Protein SLYX homolog; x 60.1 24 0.00083 31.7 7.3 50 195-244 13-62 (78)
102 3ghg_B Fibrinogen beta chain; 59.6 1.3E+02 0.0046 35.2 15.1 34 825-858 97-130 (461)
103 1fxk_C Protein (prefoldin); ar 59.5 1.2E+02 0.0042 28.8 13.5 39 887-925 89-127 (133)
104 3qh9_A Liprin-beta-2; coiled-c 59.3 87 0.003 28.5 10.5 29 866-894 48-76 (81)
105 3iox_A AGI/II, PA; alpha helix 58.5 2.7E+02 0.0094 32.8 17.4 27 270-296 70-96 (497)
106 2w83_C C-JUN-amino-terminal ki 58.1 52 0.0018 29.6 8.8 49 877-925 28-76 (77)
107 2no2_A HIP-I, huntingtin-inter 57.0 1.3E+02 0.0046 28.4 16.7 35 188-222 7-41 (107)
108 1wt6_A Myotonin-protein kinase 55.5 60 0.0021 29.5 8.9 37 277-313 42-79 (81)
109 2w83_C C-JUN-amino-terminal ki 55.1 74 0.0025 28.7 9.3 63 199-261 12-74 (77)
110 3i00_A HIP-I, huntingtin-inter 55.0 74 0.0025 30.8 10.2 46 810-855 16-65 (120)
111 3ghg_C Fibrinogen gamma chain; 54.4 67 0.0023 37.2 11.4 48 95-153 23-70 (411)
112 2xzr_A Immunoglobulin-binding 54.1 1.4E+02 0.0049 27.9 17.2 43 885-927 61-103 (114)
113 3a7o_A Autophagy protein 16; c 53.9 61 0.0021 28.8 8.4 29 873-901 47-75 (75)
114 2xnx_M M protein, M1-BC1; cell 53.7 62 0.0021 32.4 9.5 47 882-928 62-108 (146)
115 3nmd_A CGMP dependent protein 53.6 32 0.0011 30.7 6.7 24 873-896 41-64 (72)
116 1go4_E MAD1 (mitotic arrest de 51.8 53 0.0018 31.0 8.3 18 808-825 11-28 (100)
117 3nmd_A CGMP dependent protein 51.3 50 0.0017 29.5 7.6 49 255-303 22-70 (72)
118 3efg_A Protein SLYX homolog; x 51.0 50 0.0017 29.7 7.8 52 813-864 11-62 (78)
119 1x8y_A Lamin A/C; structural p 49.4 1E+02 0.0035 27.9 9.7 23 886-908 56-78 (86)
120 3trt_A Vimentin; cytoskeleton, 49.0 1E+02 0.0036 26.8 9.5 20 885-904 55-74 (77)
121 2xu6_A MDV1 coiled coil; prote 48.9 1E+02 0.0035 27.5 9.1 63 204-266 8-70 (72)
122 3qh9_A Liprin-beta-2; coiled-c 48.2 1.2E+02 0.0041 27.6 9.6 54 872-925 26-79 (81)
123 1wt6_A Myotonin-protein kinase 48.2 1.3E+02 0.0045 27.4 9.8 18 886-903 52-69 (81)
124 2zdi_C Prefoldin subunit alpha 47.5 53 0.0018 32.4 8.2 41 884-924 103-143 (151)
125 3ghg_B Fibrinogen beta chain; 47.3 2E+02 0.007 33.6 14.0 54 94-158 79-132 (461)
126 3uux_B Mitochondrial division 47.3 1.6E+02 0.0056 31.6 12.2 61 795-858 138-198 (242)
127 3ghg_C Fibrinogen gamma chain; 46.7 98 0.0033 35.8 11.2 37 822-858 37-73 (411)
128 1cii_A Colicin IA; bacteriocin 46.6 4E+02 0.014 31.3 15.9 71 219-289 351-421 (602)
129 2no2_A HIP-I, huntingtin-inter 46.4 2E+02 0.0067 27.3 16.3 30 828-857 13-42 (107)
130 3m91_A Proteasome-associated A 46.2 69 0.0024 26.7 7.2 42 188-229 8-49 (51)
131 4emc_A Monopolin complex subun 45.6 74 0.0025 33.1 9.0 54 238-291 13-66 (190)
132 2xnx_M M protein, M1-BC1; cell 45.2 73 0.0025 31.9 8.5 30 250-279 99-128 (146)
133 3htk_A Structural maintenance 44.5 97 0.0033 25.7 8.2 26 878-903 25-50 (60)
134 2zdi_C Prefoldin subunit alpha 41.8 96 0.0033 30.5 9.0 37 889-925 101-137 (151)
135 4emc_A Monopolin complex subun 41.3 1.1E+02 0.0039 31.7 9.6 41 818-858 15-55 (190)
136 3l4q_C Phosphatidylinositol 3- 39.4 3.3E+02 0.011 27.9 16.1 119 810-928 11-145 (170)
137 1ci6_A Transcription factor AT 39.2 88 0.003 26.8 7.2 33 877-909 28-60 (63)
138 3mov_A Lamin-B1; LMNB1, B-type 39.0 1.2E+02 0.0042 28.1 8.6 44 812-858 15-58 (95)
139 3mov_A Lamin-B1; LMNB1, B-type 38.8 65 0.0022 29.9 6.8 23 887-909 38-60 (95)
140 2oqq_A Transcription factor HY 38.8 77 0.0026 25.5 6.0 33 875-907 6-38 (42)
141 2yy0_A C-MYC-binding protein; 38.6 38 0.0013 28.3 4.6 30 895-924 21-50 (53)
142 4dk0_A Putative MACA; alpha-ha 37.7 1.4E+02 0.0046 32.7 10.4 12 788-799 54-65 (369)
143 1d7m_A Cortexillin I; coiled-c 37.3 2.5E+02 0.0087 26.0 16.9 62 187-248 2-63 (101)
144 3he5_B Synzip2; heterodimeric 36.6 1.2E+02 0.0041 24.5 6.9 39 195-233 9-47 (52)
145 1ik9_A DNA repair protein XRCC 36.4 3.1E+02 0.011 28.8 12.3 7 87-93 69-75 (213)
146 3etw_A Adhesin A; antiparallel 35.7 3.1E+02 0.011 26.5 13.6 20 880-899 83-102 (119)
147 4dzn_A Coiled-coil peptide CC- 34.7 51 0.0017 24.5 4.1 27 232-258 3-29 (33)
148 3hhm_B NISH2 P85alpha; PI3KCA, 34.3 5.6E+02 0.019 29.0 17.7 37 142-179 119-155 (373)
149 2l5g_B Putative uncharacterize 34.2 73 0.0025 25.7 5.3 32 890-921 6-37 (42)
150 2p01_A Alpha-2-macroglobulin r 34.2 5.4E+02 0.018 28.8 16.4 99 116-216 121-258 (323)
151 1gk4_A Vimentin; intermediate 34.1 2.6E+02 0.0088 25.1 11.7 15 889-903 57-71 (84)
152 3uul_A Utrophin; spectrin repe 33.8 2.6E+02 0.0089 25.0 13.8 21 890-910 82-102 (118)
153 2ke4_A CDC42-interacting prote 33.6 3E+02 0.01 25.7 10.5 74 838-915 16-91 (98)
154 4etp_A Kinesin-like protein KA 33.6 87 0.003 35.9 8.2 51 878-928 9-59 (403)
155 4etp_A Kinesin-like protein KA 32.4 92 0.0032 35.7 8.1 10 911-920 49-58 (403)
156 2k48_A Nucleoprotein; viral pr 32.2 2.6E+02 0.0087 26.6 9.5 30 805-834 31-60 (107)
157 2avr_X Adhesion A; antiparalle 31.8 3.7E+02 0.012 26.1 12.9 33 864-899 70-102 (119)
158 3tul_A Cell invasion protein S 31.3 58 0.002 32.7 5.3 95 228-329 24-118 (158)
159 3haj_A Human pacsin2 F-BAR; pa 31.3 6.6E+02 0.023 29.0 17.6 145 149-296 84-240 (486)
160 3hhm_B NISH2 P85alpha; PI3KCA, 31.0 6.3E+02 0.021 28.6 18.0 51 877-927 203-253 (373)
161 2lw1_A ABC transporter ATP-bin 31.0 2E+02 0.0067 26.0 8.5 20 811-830 24-43 (89)
162 2wt7_B Transcription factor MA 30.6 3.3E+02 0.011 25.2 11.0 70 806-876 18-87 (90)
163 2pms_C Pneumococcal surface pr 29.3 1.5E+02 0.0051 29.0 7.7 25 903-927 64-88 (125)
164 1pl5_A Regulatory protein SIR4 29.2 3.5E+02 0.012 25.8 9.9 34 892-925 94-127 (142)
165 1nyh_A Regulatory protein SIR4 28.6 3.8E+02 0.013 26.0 10.3 33 893-925 119-151 (166)
166 1g6u_A Domain swapped dimer; d 28.2 99 0.0034 24.6 5.1 26 806-831 17-42 (48)
167 3q0x_A Centriole protein; cent 28.2 1.4E+02 0.0049 31.8 8.1 57 800-856 162-218 (228)
168 2ke4_A CDC42-interacting prote 28.2 1.7E+02 0.0058 27.3 7.7 65 239-303 16-85 (98)
169 3l4q_C Phosphatidylinositol 3- 28.0 5E+02 0.017 26.5 15.9 21 246-266 97-117 (170)
170 1hjb_A Ccaat/enhancer binding 27.8 3.6E+02 0.012 24.7 9.7 57 212-268 17-73 (87)
171 3uun_A Dystrophin; triple heli 27.1 3.3E+02 0.011 24.2 15.2 21 890-910 82-102 (119)
172 2pms_C Pneumococcal surface pr 27.1 1.9E+02 0.0065 28.3 8.0 20 134-153 12-31 (125)
173 2qih_A Protein USPA1; trimeric 26.3 4.9E+02 0.017 25.9 18.0 69 196-264 54-122 (157)
174 3htk_B Structural maintenance 26.2 3.2E+02 0.011 23.7 9.7 61 848-908 8-68 (73)
175 3m91_A Proteasome-associated A 26.1 2.3E+02 0.0079 23.6 7.2 36 821-856 14-49 (51)
176 1t2k_D Cyclic-AMP-dependent tr 26.0 2.9E+02 0.01 23.1 8.3 34 232-265 23-56 (61)
177 1ik9_A DNA repair protein XRCC 26.0 5.9E+02 0.02 26.7 13.6 66 825-896 134-199 (213)
178 4abx_A DNA repair protein RECN 25.9 5E+02 0.017 25.8 13.1 38 286-323 121-162 (175)
179 2yy0_A C-MYC-binding protein; 25.5 1.1E+02 0.0039 25.5 5.3 31 809-839 19-49 (53)
180 1lwu_C Fibrinogen gamma chain; 25.0 1.7E+02 0.0059 32.7 8.4 24 813-836 9-32 (323)
181 3k29_A Putative uncharacterize 24.7 5.8E+02 0.02 26.1 20.5 102 172-278 24-125 (169)
182 2k48_A Nucleoprotein; viral pr 24.7 3.7E+02 0.013 25.5 9.2 32 836-867 34-65 (107)
183 3c9i_A Tail needle protein GP2 23.9 6.6E+02 0.023 26.5 16.3 108 864-971 90-238 (242)
184 3fpp_A Macrolide-specific effl 23.7 1.1E+02 0.0038 33.1 6.5 11 789-799 54-64 (341)
185 4e61_A Protein BIM1; EB1-like 23.6 3.7E+02 0.013 25.6 9.1 46 879-924 18-63 (106)
186 3fpp_A Macrolide-specific effl 22.7 1.4E+02 0.0049 32.2 7.2 13 913-925 134-146 (341)
187 2p22_A Suppressor protein STP2 22.5 4.8E+02 0.016 26.8 10.4 48 276-326 111-158 (174)
188 3s9g_A Protein hexim1; cyclin 22.2 2.4E+02 0.0082 26.6 7.3 45 884-928 35-79 (104)
189 1wle_A Seryl-tRNA synthetase; 22.1 4.7E+02 0.016 30.8 11.8 15 294-308 148-162 (501)
190 3cl3_D NF-kappa-B essential mo 21.6 1.4E+02 0.0046 29.4 5.8 39 886-924 55-93 (130)
191 3m9b_A Proteasome-associated A 21.4 69 0.0024 34.7 4.1 41 888-928 56-96 (251)
192 1f5n_A Interferon-induced guan 21.3 1.1E+03 0.038 28.2 21.8 18 99-116 351-368 (592)
193 4fla_A Regulation of nuclear P 21.2 6.2E+02 0.021 25.2 14.0 33 807-839 66-98 (152)
194 2b5u_A Colicin E3; high resolu 21.1 1.1E+03 0.037 28.0 21.6 21 452-473 500-520 (551)
195 3qne_A Seryl-tRNA synthetase, 20.9 3.3E+02 0.011 32.1 10.0 29 830-858 33-61 (485)
196 4e61_A Protein BIM1; EB1-like 20.7 4.9E+02 0.017 24.8 9.3 53 250-302 9-61 (106)
197 1gu4_A CAAT/enhancer binding p 20.7 4.6E+02 0.016 23.5 9.2 31 235-265 40-70 (78)
198 2dq0_A Seryl-tRNA synthetase; 20.7 6E+02 0.021 29.4 12.2 23 903-925 79-101 (455)
199 2dq0_A Seryl-tRNA synthetase; 20.4 2.8E+02 0.0096 32.2 9.3 28 272-299 75-102 (455)
200 2ap3_A Conserved hypothetical 20.2 7.6E+02 0.026 25.8 17.1 87 78-166 39-126 (199)
201 3u0c_A Invasin IPAB, 62 kDa an 20.1 7.1E+02 0.024 25.5 10.8 7 780-786 32-38 (201)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.62 E-value=0.00014 Score=75.02 Aligned_cols=12 Identities=17% Similarity=0.221 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 001374 77 MEEQIKELNEKL 88 (1091)
Q Consensus 77 ~~~~~k~l~ekl 88 (1091)
+...+..+..++
T Consensus 25 l~~~l~~l~~~~ 36 (284)
T 1c1g_A 25 AEADKKAAEDRS 36 (284)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.97 E-value=7.4e-06 Score=105.28 Aligned_cols=9 Identities=33% Similarity=1.084 Sum_probs=5.4
Q ss_pred CCCCCCCcc
Q 001374 3 RRSWPWKKK 11 (1091)
Q Consensus 3 ~rsW~WkkK 11 (1091)
+|.|||.+-
T Consensus 834 ~k~~~~~rl 842 (1184)
T 1i84_S 834 VXHWPWMXL 842 (1184)
T ss_dssp HTTCHHHHH
T ss_pred HhhhHHHHH
Confidence 456776654
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.82 E-value=2.3e-05 Score=100.79 Aligned_cols=29 Identities=10% Similarity=0.000 Sum_probs=11.1
Q ss_pred HHHHHHhHHHHhhhhhhHHHHHhhhhHHH
Q 001374 123 ALALKNHLESVTLSKLTAEDRAAHLDGAL 151 (1091)
Q Consensus 123 ~~~lK~~Le~~~~q~~~le~rv~hLd~aL 151 (1091)
+..++..|+.+......++.++..|+..+
T Consensus 866 L~el~~~L~~le~~l~ele~~l~~Le~e~ 894 (1184)
T 1i84_S 866 LQRTKERQQKAEAELKELEQKHTQLCEEK 894 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 4
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.28 E-value=0.016 Score=62.48 Aligned_cols=159 Identities=13% Similarity=0.107 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHH--HH
Q 001374 810 EFEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELE--AE 887 (1091)
Q Consensus 810 elEqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selEeqLk~~~e~ledLesrL~eLe--aE 887 (1091)
+|..+-.++..+...+..+...+..+...+..+...+..++.++..++..+..++.++......++..+.++.... -+
T Consensus 12 ~LQ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE 91 (256)
T 3na7_A 12 EISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERE 91 (256)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHH
Confidence 4445555566666666655666666666666666666666666666666666666666666666655555554322 45
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhcccchhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 888 VNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNENCAVCSSEADENKIKQDRDLAAAAERLAECQETILLLGKQ 967 (1091)
Q Consensus 888 lkeLqeKVesLE~ELe~ek~~~eEleaK~~eLEeQLe~~~~~~lk~q~dkdLKikqEkEIaaAeeKLAEcQeTI~sLEKQ 967 (1091)
+..+...+..++.++..+...+.++..++..++..+........ .++.......+.....+++.+..+..+..+
T Consensus 92 ~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~------~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~ 165 (256)
T 3na7_A 92 LRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEML------ELEKLALELESLVENEVKNIKETQQIIFKK 165 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555554443100 011122223344455566666666666666
Q ss_pred HHhhcCC
Q 001374 968 LKSLRPQ 974 (1091)
Q Consensus 968 LKsLa~q 974 (1091)
-..+...
T Consensus 166 r~~l~~~ 172 (256)
T 3na7_A 166 KEDLVEK 172 (256)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 6555554
No 5
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=96.97 E-value=0.043 Score=57.09 Aligned_cols=130 Identities=15% Similarity=0.123 Sum_probs=75.7
Q ss_pred ccccchhhhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhH
Q 001374 795 AAYESETTACKFSLEEFEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESY 874 (1091)
Q Consensus 795 ~~~~~~~~~~~~s~EelEqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selEeqLk~~~e~l 874 (1091)
++|.+..+.+.+=.+.+.++......++.+|.+++.....+.. +++..|..++.++..++..+..+..++.....+|
T Consensus 3 ~~f~s~~ee~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~---ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~ 79 (189)
T 2v71_A 3 MDFSSLKEETAYWKELSMKYKQSFQEARDELVEFQEGSRELEA---ELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKL 79 (189)
T ss_dssp -CCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566766666666677788888888899888888865554443 3455666666666666666666666666666555
Q ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhh
Q 001374 875 RSLETH----AQELEAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNE 927 (1091)
Q Consensus 875 edLesr----L~eLeaElkeLqeKVesLE~ELe~ek~~~eEleaK~~eLEeQLe~~~ 927 (1091)
.....+ .+.++.++..++.....|...|..+.....+++.+.+....-++.++
T Consensus 80 ~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e 136 (189)
T 2v71_A 80 EHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFE 136 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHH
Confidence 554444 33444444444444444444444444444444444444444444333
No 6
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.89 E-value=0.055 Score=58.32 Aligned_cols=12 Identities=8% Similarity=0.064 Sum_probs=4.2
Q ss_pred HHHHHHHHHHHH
Q 001374 814 LKLEKDNLATDL 825 (1091)
Q Consensus 814 LEsEkeelE~eL 825 (1091)
++.++..+...+
T Consensus 37 le~~~~~l~~~~ 48 (256)
T 3na7_A 37 ALNDKEAKNKAI 48 (256)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 7
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=96.68 E-value=0.14 Score=51.88 Aligned_cols=131 Identities=19% Similarity=0.216 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 001374 810 EFEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVN 889 (1091)
Q Consensus 810 elEqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selEeqLk~~~e~ledLesrL~eLeaElk 889 (1091)
++..++.++...+.+...+..++..+...|+.+-+.+..|+..-......-..++.+|+.+..+++++++++...+..+.
T Consensus 22 EvaR~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~ 101 (155)
T 2efr_A 22 EVARLKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVT 101 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44446666666777777777777777777777777777776666666666666777777666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhcccchhHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 001374 890 LLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNENCAVCSSEADENKIKQDRDLAAAAERLAECQETILLL 964 (1091)
Q Consensus 890 eLqeKVesLE~ELe~ek~~~eEleaK~~eLEeQLe~~~~~~lk~q~dkdLKikqEkEIaaAeeKLAEcQeTI~sL 964 (1091)
.|+..|+.|+.++.. ...++..+...|...- .+|.....+++.....|+.|
T Consensus 102 kLEk~id~lEd~L~~-------~Kek~~~i~~eLd~tl-----------------~el~~~~~~~~~~~~~~~~~ 152 (155)
T 2efr_A 102 KLEKSIDDLEDELYA-------QKLKYKAISEEMKQLE-----------------DKVEELLSKNYHLENEVARL 152 (155)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH-----------------HHHHhcccchHHHHHHHHHh
Confidence 655555555555554 4445555555554211 14444456666666655554
No 8
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=96.66 E-value=0.43 Score=48.28 Aligned_cols=27 Identities=11% Similarity=0.256 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001374 946 DLAAAAERLAECQETILLLGKQLKSLR 972 (1091)
Q Consensus 946 EIaaAeeKLAEcQeTI~sLEKQLKsLa 972 (1091)
+|..+-..+..++.-.-.|++.+.+|.
T Consensus 127 eLd~tl~el~~~~~~~~~~~~~~~~~~ 153 (155)
T 2efr_A 127 EMKQLEDKVEELLSKNYHLENEVARLK 153 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHhh
Confidence 555555666667777777777777664
No 9
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.63 E-value=0.17 Score=71.01 Aligned_cols=87 Identities=13% Similarity=0.100 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 185 LEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIR 264 (1091)
Q Consensus 185 ~ELEaKLaElEkeLeelkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIenlEKEne~LK~EL~~LqeELEiL 264 (1091)
.+++.++..++++|.+.++++..++..+..++.++.+...++++++.++...+.|++..++-+..|..|-..-.+..+.+
T Consensus 2017 ~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l 2096 (3245)
T 3vkg_A 2017 EQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENF 2096 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHH
Confidence 44566677777778888888888888888888888888888888888888888888888888888888777777776666
Q ss_pred HHHHHHh
Q 001374 265 NEEKNMS 271 (1091)
Q Consensus 265 ~EElE~s 271 (1091)
..+...+
T Consensus 2097 ~~~~~~L 2103 (3245)
T 3vkg_A 2097 NTQMSTV 2103 (3245)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 6655554
No 10
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.57 E-value=0.19 Score=70.48 Aligned_cols=52 Identities=19% Similarity=0.159 Sum_probs=28.1
Q ss_pred HHHHHHHHhHHHHhhhhhhHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHHH
Q 001374 121 AEALALKNHLESVTLSKLTAEDRAAHLDGALKECMRQIRNLKEEHEQKLQDF 172 (1091)
Q Consensus 121 ~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLKec~~qLr~~reeqeqki~~~ 172 (1091)
.|+...+..|.....+.....+.|+.|-.-|.+.-.+|....++-++.+..+
T Consensus 1913 ~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i 1964 (3245)
T 3vkg_A 1913 DQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQM 1964 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555555555555555555555444443
No 11
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=96.56 E-value=0.17 Score=49.46 Aligned_cols=110 Identities=17% Similarity=0.221 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 001374 809 EEFEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEV 888 (1091)
Q Consensus 809 EelEqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selEeqLk~~~e~ledLesrL~eLeaEl 888 (1091)
+++..+..++..+...+.........+......+......|..+|+.-...+..+++.+..+......++ ..+
T Consensus 13 ~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe-------~~l 85 (129)
T 2fxo_A 13 KEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLE-------AKV 85 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-------HHH
Confidence 4556666666666666665555555555555555555555555555555544444444444433333333 333
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Q 001374 889 NLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQR 925 (1091)
Q Consensus 889 keLqeKVesLE~ELe~ek~~~eEleaK~~eLEeQLe~ 925 (1091)
+.+..+++..+.....+......+...|.+|+.+|..
T Consensus 86 ~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led 122 (129)
T 2fxo_A 86 KEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDD 122 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333444444444444444444443
No 12
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=96.55 E-value=0.4 Score=49.00 Aligned_cols=143 Identities=15% Similarity=0.204 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcchhhHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhHHHHhhhhhhHHHHHhhhhHHH
Q 001374 72 EQVQTMEEQIKELNEKLSAANSEISAKEDLVKQHTKVAEEAVSGWEKAEAEALALKNHLESVTLSKLTAEDRAAHLDGAL 151 (1091)
Q Consensus 72 ~~~~~~~~~~k~l~ekls~a~~~~~~kd~lvkqh~kvaeeav~gwekae~e~~~lK~~Le~~~~q~~~le~rv~hLd~aL 151 (1091)
+++..|+.+|..+|+||-+- -|++.-|-|..+|+..-.+++ ...++.|+++++.|+.+-
T Consensus 6 eKi~~LekQL~E~n~kLk~E------------------sE~~~rlkK~~tEl~k~~~~~---E~~~rELq~~~~~L~~~k 64 (168)
T 3o0z_A 6 EKLSQLQKQLEEANDLLRTE------------------SDTAVRLRKSHTEMSKSISQL---ESLNRELQERNRILENSK 64 (168)
T ss_dssp ----CTHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh------------------HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 34455888999999998532 356777888888765544444 456777888888887775
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 152 KECMRQIRNLKEEHEQKLQDFVLTKTKQWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEA 231 (1091)
Q Consensus 152 Kec~~qLr~~reeqeqki~~~~~~~~~e~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLEelqeeI~EL~eeiErlEg 231 (1091)
-.--+++-.++-.=++ ....| .....- ...+...+..+..++..+.....++..
T Consensus 65 ~~Leke~~~LQa~L~q--------Er~~r----~q~se~--------------~~elq~ri~~L~~El~~~k~~~~k~~~ 118 (168)
T 3o0z_A 65 SQTDKDYYQLQAILEA--------ERRDR----GHDSEM--------------IGDLQARITSLQEEVKHLKHNLEKVEG 118 (168)
T ss_dssp HHHHHHHHHHHHHHHH--------HHHHH----HHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--------HHHHH----HHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555544443332111 11110 111111 122222333344444455556666677
Q ss_pred HHHHHHhhHHHHHHHHHHHH----HHHHHHHHHH
Q 001374 232 EIELLKGNIEQCEREINSAK----YELHIVSKEL 261 (1091)
Q Consensus 232 Ei~LLkERIenlEKEne~LK----~EL~~LqeEL 261 (1091)
+..-+.+++..++++.+.+. ++|..++..+
T Consensus 119 e~r~L~Ekl~~lEKe~a~~eid~~~eLKalQ~~~ 152 (168)
T 3o0z_A 119 ERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQRL 152 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 77778888888888888888 7777777763
No 13
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.36 E-value=0.13 Score=65.90 Aligned_cols=118 Identities=19% Similarity=0.178 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH---HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 001374 182 KIRLEFEAKIANFEQELLRSAAENATLSRSLQ----ERSNMLIKI---SEEKSQAEAEIELLKGNIEQCEREINSAKYEL 254 (1091)
Q Consensus 182 ~~~~ELEaKLaElEkeLeelkaEl~aLeeqLE----elqeeI~EL---~eeiErlEgEi~LLkERIenlEKEne~LK~EL 254 (1091)
.....|+.++.+++.+++....++..+...+. ....++..| .++++..+.+...+++++..++.+++.|+.++
T Consensus 921 ~~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~ 1000 (1080)
T 2dfs_A 921 KLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKEL 1000 (1080)
T ss_dssp ------------------------------CHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777766666665555432 233334444 23334445555556666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001374 255 HIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGL 302 (1091)
Q Consensus 255 ~~LqeELEiL~EElE~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l 302 (1091)
..+.++.+.+.+...... +.++.+...+.+..++|++++..+...
T Consensus 1001 ~~~~ke~~~lee~~~~~~---~~L~~kv~~L~~e~~~L~qq~~~l~~~ 1045 (1080)
T 2dfs_A 1001 HQTQTEKKTIEEWADKYK---HETEQLVSELKEQNTLLKTEKEELNRR 1045 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666655444443 234455555555555555555555533
No 14
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.28 E-value=0.15 Score=65.45 Aligned_cols=15 Identities=13% Similarity=0.348 Sum_probs=0.0
Q ss_pred hhhHHHHHhhhhHHH
Q 001374 137 KLTAEDRAAHLDGAL 151 (1091)
Q Consensus 137 ~~~le~rv~hLd~aL 151 (1091)
+..||.+|..|..-|
T Consensus 923 ~~~LE~kl~eLq~rL 937 (1080)
T 2dfs_A 923 HIGLENKIMQLQRKI 937 (1080)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHHHH
Confidence 444455555444443
No 15
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=96.12 E-value=0.51 Score=46.09 Aligned_cols=105 Identities=19% Similarity=0.261 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 824 DLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVNLLRAKIESLENELQ 903 (1091)
Q Consensus 824 eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selEeqLk~~~e~ledLesrL~eLeaElkeLqeKVesLE~ELe 903 (1091)
++.....++..+...+...+....+|+.+...+...+..+..++..-...+.+++.++..+...-..|..++..+...++
T Consensus 14 E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rle 93 (129)
T 2fxo_A 14 EMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLE 93 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555555555555666666666666666666688888888888888888888888888899999999998
Q ss_pred HHHhhhHHHHHHHHHHHHHHHhhhh
Q 001374 904 DEKMSHHNAMAKCKELEEQLQRNEN 928 (1091)
Q Consensus 904 ~ek~~~eEleaK~~eLEeQLe~~~~ 928 (1091)
........+.+..++++.++.....
T Consensus 94 eeee~~~~L~~~kkkle~e~~~Lk~ 118 (129)
T 2fxo_A 94 DEEEMNAELTAKKRKLEDECSELKR 118 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888886664
No 16
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=95.75 E-value=2.3 Score=44.25 Aligned_cols=122 Identities=16% Similarity=0.177 Sum_probs=87.7
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 001374 175 TKTKQWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYEL 254 (1091)
Q Consensus 175 ~~~~e~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIenlEKEne~LK~EL 254 (1091)
.-|++.| .+|+..|..+++++..++..+..+...++.+...+.....+ ....++.++..+..+...+..|+..|
T Consensus 38 esSrELE---~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e---~~~~~~~Lq~el~~l~~~~~~l~~~i 111 (189)
T 2v71_A 38 EGSRELE---AELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQ---SYKQVSVLEDDLSQTRAIKEQLHKYV 111 (189)
T ss_dssp HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455544 56788888888888787777777777777776665544333 23346666677777777777788888
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001374 255 HIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGL 302 (1091)
Q Consensus 255 ~~LqeELEiL~EElE~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l 302 (1091)
..++..-+.+........-+++.....+.....+++=|+.++..-..|
T Consensus 112 reLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~EKe~l 159 (189)
T 2v71_A 112 RELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDEKESL 159 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877777777777777777788888888888888888888888764433
No 17
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=95.71 E-value=0.23 Score=46.73 Aligned_cols=90 Identities=21% Similarity=0.264 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 001374 811 FEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVNL 890 (1091)
Q Consensus 811 lEqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selEeqLk~~~e~ledLesrL~eLeaElke 890 (1091)
+..|+.++.++..+...+..++.........++..+..|+..+..++..+..++.++......+...+..+...+.++..
T Consensus 11 m~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~ 90 (101)
T 3u1c_A 11 MQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVAS 90 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666666666666666666666666655556666666655565655566666666666
Q ss_pred HHHHHHHHHH
Q 001374 891 LRAKIESLEN 900 (1091)
Q Consensus 891 LqeKVesLE~ 900 (1091)
|..+|..|+.
T Consensus 91 L~RriqllEE 100 (101)
T 3u1c_A 91 LNRRIQLVEE 100 (101)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHcc
Confidence 6666666553
No 18
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=95.25 E-value=0.22 Score=58.80 Aligned_cols=75 Identities=15% Similarity=0.082 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001374 227 SQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRG 301 (1091)
Q Consensus 227 ErlEgEi~LLkERIenlEKEne~LK~EL~~LqeELEiL~EElE~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~ 301 (1091)
++++..+..++++.+..+.++.+++.++....++++.+..+++..++.++...++..++.++++.+.+++..+..
T Consensus 505 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~ 579 (597)
T 3oja_B 505 DNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEA 579 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455556666666667777777777777777777777777777777777777777766666655555443
No 19
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=95.12 E-value=0.71 Score=43.38 Aligned_cols=94 Identities=19% Similarity=0.262 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 149 GALKECMRQIRNLKEEHEQKLQDFVLTKTKQWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQ 228 (1091)
Q Consensus 149 ~aLKec~~qLr~~reeqeqki~~~~~~~~~e~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLEelqeeI~EL~eeiEr 228 (1091)
+|+|..|+.|+.=.+.-..+...+ -.+.++.+.....++..+..+..++..+..++..+...+......+.........
T Consensus 5 daIKkKm~~lk~e~e~a~drae~~-e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~ 83 (101)
T 3u1c_A 5 DAIKKKMQMLKLDKENALDRAEQA-EADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAK 83 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888877777666555555544 3334444555555566666666665555555555555555555555555555555
Q ss_pred HHHHHHHHHhhHHHH
Q 001374 229 AEAEIELLKGNIEQC 243 (1091)
Q Consensus 229 lEgEi~LLkERIenl 243 (1091)
.++++..|.-||+-+
T Consensus 84 aE~ev~~L~Rriqll 98 (101)
T 3u1c_A 84 AESEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555555443
No 20
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=95.04 E-value=3.6 Score=42.10 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=10.4
Q ss_pred HHHHHhhhhHHHHHHHHHHHhh
Q 001374 140 AEDRAAHLDGALKECMRQIRNL 161 (1091)
Q Consensus 140 le~rv~hLd~aLKec~~qLr~~ 161 (1091)
..||+.+|+--|.|+=..|+.-
T Consensus 4 ~neKi~~LekQL~E~n~kLk~E 25 (168)
T 3o0z_A 4 ANEKLSQLQKQLEEANDLLRTE 25 (168)
T ss_dssp ------CTHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHh
Confidence 5677777777777766555543
No 21
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=95.02 E-value=0.44 Score=44.64 Aligned_cols=89 Identities=20% Similarity=0.256 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 001374 811 FEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVNL 890 (1091)
Q Consensus 811 lEqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selEeqLk~~~e~ledLesrL~eLeaElke 890 (1091)
+..|+.++.++..+...+..++.........++..+..|+..+..++..+..++..+......++..+..+...+.++..
T Consensus 11 m~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evas 90 (101)
T 3u59_A 11 MQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVAS 90 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666666666666666666666666666655555555555555555555555555666666
Q ss_pred HHHHHHHHH
Q 001374 891 LRAKIESLE 899 (1091)
Q Consensus 891 LqeKVesLE 899 (1091)
|..+|..|+
T Consensus 91 LnRriqllE 99 (101)
T 3u59_A 91 LNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHc
Confidence 666665554
No 22
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=94.58 E-value=1 Score=42.23 Aligned_cols=94 Identities=21% Similarity=0.246 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 149 GALKECMRQIRNLKEEHEQKLQDFVLTKTKQWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQ 228 (1091)
Q Consensus 149 ~aLKec~~qLr~~reeqeqki~~~~~~~~~e~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLEelqeeI~EL~eeiEr 228 (1091)
+|+|..|+.|+.=.+.-..++..+ -.+.++-+.....++..+..+..++..+..++......+...+..+.........
T Consensus 5 d~iKkKm~~lk~e~e~a~d~ae~~-e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~ 83 (101)
T 3u59_A 5 EAIKKKMQMLKLDKENAIDRAEQA-EADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATD 83 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777776666655555444444 3333343444444555555555555555555555555555555544444445555
Q ss_pred HHHHHHHHHhhHHHH
Q 001374 229 AEAEIELLKGNIEQC 243 (1091)
Q Consensus 229 lEgEi~LLkERIenl 243 (1091)
.+++...|.-||+-+
T Consensus 84 AE~evasLnRriqll 98 (101)
T 3u59_A 84 AEAEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555555443
No 23
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=94.48 E-value=0.099 Score=52.44 Aligned_cols=109 Identities=22% Similarity=0.288 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 001374 814 LKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVNLLRA 893 (1091)
Q Consensus 814 LEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selEeqLk~~~e~ledLesrL~eLeaElkeLqe 893 (1091)
++.++...+.+|..+..+++.......+.+....-|+..-..-.+.+..++.+++.... ........+.+...
T Consensus 8 lEeeLer~eerl~~a~~kLeeaek~adE~eR~~k~lE~r~~~deEr~~~lE~qLkeak~-------~aeeadrKyeE~~R 80 (147)
T 2b9c_A 8 VEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKH-------IAEDADRKYEEVAR 80 (147)
T ss_dssp ---CCGGGGTTTTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHH-------HHHHHHHhHHHHHH
Confidence 44455555555666666666666666666655666666666555655555555555444 44445566667777
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhh
Q 001374 894 KIESLENELQDEKMSHHNAMAKCKELEEQLQRNENC 929 (1091)
Q Consensus 894 KVesLE~ELe~ek~~~eEleaK~~eLEeQLe~~~~~ 929 (1091)
|+.-++.+|+.-.........+|.+|+++|..++.+
T Consensus 81 Kl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~n 116 (147)
T 2b9c_A 81 KLVIIESDLERAEERAELSEGKCAELEEELKTVTNN 116 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888889999999999999999999999999988863
No 24
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=93.51 E-value=5.5 Score=40.26 Aligned_cols=17 Identities=12% Similarity=0.030 Sum_probs=7.0
Q ss_pred HHHHhhhhhhHHHHHhh
Q 001374 130 LESVTLSKLTAEDRAAH 146 (1091)
Q Consensus 130 Le~~~~q~~~le~rv~h 146 (1091)
|-.+......|+|.+.+
T Consensus 8 LI~Ain~qs~LeD~L~~ 24 (154)
T 2ocy_A 8 LIESVDKQSHLEEQLNK 24 (154)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccHHHHHHH
Confidence 33333444444444444
No 25
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=92.44 E-value=7 Score=39.53 Aligned_cols=95 Identities=16% Similarity=0.144 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhcc----cchhHhh-hhhhHHHHHHHHHHH
Q 001374 880 HAQELEAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNENCAVC----SSEADEN-KIKQDRDLAAAAERL 954 (1091)
Q Consensus 880 rL~eLeaElkeLqeKVesLE~ELe~ek~~~eEleaK~~eLEeQLe~~~~~~lk----~q~dkdL-KikqEkEIaaAeeKL 954 (1091)
++..+..++.....++..|..++..++..-...+.....++.+|+........ ...+.-. ....+.....+...+
T Consensus 45 ~~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql 124 (154)
T 2ocy_A 45 DYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQL 124 (154)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455555666666677778888888888888888888888887751111 1111111 333455566677888
Q ss_pred HHHHHHHHHHHHHHHhhcCC
Q 001374 955 AECQETILLLGKQLKSLRPQ 974 (1091)
Q Consensus 955 AEcQeTI~sLEKQLKsLa~q 974 (1091)
.+.+.-|..+..||..|..-
T Consensus 125 ~e~~~~l~~lq~ql~~LK~v 144 (154)
T 2ocy_A 125 REKDTLLDTLTLQLKNLKKV 144 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888653
No 26
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=92.20 E-value=1.1 Score=43.51 Aligned_cols=28 Identities=25% Similarity=0.299 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 001374 886 AEVNLLRAKIESLENELQDEKMSHHNAM 913 (1091)
Q Consensus 886 aElkeLqeKVesLE~ELe~ek~~~eEle 913 (1091)
.++..++.+|..|+.++...+..+....
T Consensus 75 ~~l~~~q~~i~~lE~eL~~~r~e~~~ql 102 (129)
T 3tnu_B 75 LALKDARNKLAELEEALQKAKQDMARLL 102 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4556666677777777776666555433
No 27
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=91.75 E-value=2.9 Score=40.32 Aligned_cols=98 Identities=18% Similarity=0.196 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 001374 815 KLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVNLLRAK 894 (1091)
Q Consensus 815 EsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selEeqLk~~~e~ledLesrL~eLeaElkeLqeK 894 (1091)
+.++..+...+..+...-..+..++..+...+.+++.+.+.--.....+|.+|..+.. .+......--.|+.+
T Consensus 19 e~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK-------~lD~~~l~r~dLE~~ 91 (119)
T 3ol1_A 19 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQ-------DVDNASLARLDLERK 91 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhh-------cccHHHHHHHHHHHH
Confidence 3444444444444333333333444444444444444433332223334444444332 222233334456677
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 001374 895 IESLENELQDEKMSHHNAMAKCKELEEQ 922 (1091)
Q Consensus 895 VesLE~ELe~ek~~~eEleaK~~eLEeQ 922 (1091)
|.+|..||.+++..++ ..+.+|+.+
T Consensus 92 iesL~eEl~FLKk~he---eEl~eLq~q 116 (119)
T 3ol1_A 92 VESLQEEIAFLKKLHE---EEIQELQAQ 116 (119)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 7778888888777665 344444443
No 28
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=91.71 E-value=1.1 Score=43.92 Aligned_cols=30 Identities=13% Similarity=0.218 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 001374 886 AEVNLLRAKIESLENELQDEKMSHHNAMAK 915 (1091)
Q Consensus 886 aElkeLqeKVesLE~ELe~ek~~~eEleaK 915 (1091)
.++..++.+|..|+.++...+..+......
T Consensus 77 ~~l~~~q~~i~~lE~eL~~~r~em~~ql~E 106 (131)
T 3tnu_A 77 MQLAQIQEMIGSVEEQLAQLRCEMEQQNQE 106 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777777777766665544333
No 29
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=91.65 E-value=1.7 Score=51.18 Aligned_cols=26 Identities=12% Similarity=0.148 Sum_probs=12.4
Q ss_pred HHhhhHHHHHHHHHHHHHHhhhHHHH
Q 001374 158 IRNLKEEHEQKLQDFVLTKTKQWDKI 183 (1091)
Q Consensus 158 Lr~~reeqeqki~~~~~~~~~e~e~~ 183 (1091)
|..+-.+|++-+-..|.+-+.+++++
T Consensus 51 LQglLdkqErDltkrINELKnqLEdl 76 (562)
T 3ghg_A 51 MKGLIDEVNQDFTNRINKLKNSLFEY 76 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred hhhhHHhhcCcHHHHHHHHHHHHHHH
Confidence 33444455555555544444444444
No 30
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=90.60 E-value=3.1 Score=37.46 Aligned_cols=64 Identities=17% Similarity=0.186 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHH
Q 001374 817 EKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETH 880 (1091)
Q Consensus 817 EkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selEeqLk~~~e~ledLesr 880 (1091)
.+..+..++..+.++++.+...++..+.....++.++..++..+..++.++....+.+..+...
T Consensus 7 Km~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~k 70 (81)
T 1ic2_A 7 KMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEK 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444444444444555444444333333
No 31
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=90.27 E-value=11 Score=37.02 Aligned_cols=102 Identities=16% Similarity=0.279 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 185 LEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIR 264 (1091)
Q Consensus 185 ~ELEaKLaElEkeLeelkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIenlEKEne~LK~EL~~LqeELEiL 264 (1091)
+.|++.+..+..++++.+.++.-.-.-+. .-++...-++.|-..-++++..|+.++..++..++..
T Consensus 14 a~L~~D~~s~~~eleEnqeEL~iVgkML~--------------EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~ 79 (167)
T 4gkw_A 14 ADLKQDTESLQKQLEENQEELEIVGNMLR--------------EEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKA 79 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHH
Confidence 34455555555555554444443333332 2334445556666667778888888888777776555
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 001374 265 NEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLVR 304 (1091)
Q Consensus 265 ~EElE~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l~r 304 (1091)
...+... +..+.|+.=...|+..||+.+..-..||-
T Consensus 80 ~~~Lkrn----~~qQnQQSlDiRKLrELEADLKEKDsMVe 115 (167)
T 4gkw_A 80 DQLLKRN----SQQQNQQSLDMRKLGELEADLKEKDSMVE 115 (167)
T ss_dssp HHHHHHH----HHHHHHHHHHHHHTHHHHHTHHHHHHHHH
T ss_pred HHHHHhh----hHHHhHhhhhHHHHHHHHhHHhhhhHHHH
Confidence 4443333 45566666677889999999988888874
No 32
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=90.11 E-value=2.1 Score=49.37 Aligned_cols=51 Identities=14% Similarity=0.058 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 217 NMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEE 267 (1091)
Q Consensus 217 eeI~EL~eeiErlEgEi~LLkERIenlEKEne~LK~EL~~LqeELEiL~EE 267 (1091)
+...++..++++...+....+++++.+.+++++++.++..+...++...+.
T Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (487)
T 3oja_A 421 EMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANAT 471 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccH
Confidence 334444444445555555555555555555555555555555554444333
No 33
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=90.05 E-value=3.2 Score=37.34 Aligned_cols=65 Identities=20% Similarity=0.225 Sum_probs=38.4
Q ss_pred HHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 001374 853 LASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVNLLRAKIESLENELQDEKMSHHNAMAKCK 917 (1091)
Q Consensus 853 LesLqeS~selEeqLk~~~e~ledLesrL~eLeaElkeLqeKVesLE~ELe~ek~~~eEleaK~~ 917 (1091)
+..++.....+...+......++..+.++..++.++..++.|+..|+.+++.....+.+...++.
T Consensus 8 m~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLe 72 (81)
T 1ic2_A 8 MQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLE 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333335555555555556666677777777777777777777776655555544443
No 34
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=89.81 E-value=14 Score=35.52 Aligned_cols=38 Identities=8% Similarity=0.285 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 187 FEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISE 224 (1091)
Q Consensus 187 LEaKLaElEkeLeelkaEl~aLeeqLEelqeeI~EL~e 224 (1091)
++..|..+..++..+..++..+.-+++..+..+.++..
T Consensus 18 ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~ 55 (119)
T 3ol1_A 18 YEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLRE 55 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555555555554444444433
No 35
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=89.65 E-value=4.8 Score=46.23 Aligned_cols=96 Identities=19% Similarity=0.234 Sum_probs=58.6
Q ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 147 LDGALKECMRQIRNLKEEHEQKLQDFVLTKTKQWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEK 226 (1091)
Q Consensus 147 Ld~aLKec~~qLr~~reeqeqki~~~~~~~~~e~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLEelqeeI~EL~eei 226 (1091)
.+.||++..++++.+-++ ..+..|+......++.+|.++++.+..++++-....+.+-.++..+..
T Consensus 371 ~eeal~~~~~~i~~~l~~---------~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 436 (471)
T 3mq9_A 371 VDEALKDAQTRITAARDG---------LRAVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDA----- 436 (471)
T ss_dssp HHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHh---------hHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHH-----
Confidence 467777777776655443 233456677888899999999998888888877777666555544322
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 001374 227 SQAEAEIELLKGNIEQCEREINSAKYELHIVSKEL 261 (1091)
Q Consensus 227 ErlEgEi~LLkERIenlEKEne~LK~EL~~LqeEL 261 (1091)
..++ ...|++.++.++..|..+|+.+..++
T Consensus 437 --~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (471)
T 3mq9_A 437 --EKAQ---GQKKVEELEGEITTLNHKLQDASAEV 466 (471)
T ss_dssp --HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 11355555555555555555544443
No 36
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=89.10 E-value=15 Score=41.84 Aligned_cols=60 Identities=13% Similarity=0.213 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 001374 227 SQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGV 286 (1091)
Q Consensus 227 ErlEgEi~LLkERIenlEKEne~LK~EL~~LqeELEiL~EElE~s~qsaeal~KQ~lEl~ 286 (1091)
+.++.++..|+.++...-.++..|+.-|..+-.+++.|+..++...+.-........+.+
T Consensus 116 ~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~Id~c~~~C~~sC~~~l~~~ 175 (390)
T 1deq_A 116 EDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDIDIKIRSCKGSCSRALEHK 175 (390)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhh
Confidence 345566667777777666677777777777777766666666665554433333333333
No 37
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=87.87 E-value=5.3 Score=36.52 Aligned_cols=32 Identities=13% Similarity=0.382 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 001374 893 AKIESLENELQDEKMSHHNAMAKCKELEEQLQ 924 (1091)
Q Consensus 893 eKVesLE~ELe~ek~~~eEleaK~~eLEeQLe 924 (1091)
+.+.+|++.+....-.-.++++++.-|+++|.
T Consensus 49 ~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~ 80 (86)
T 3swk_A 49 NTLQSFRQDVDNASLARLDLERKVESLQEEIA 80 (86)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444443
No 38
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=87.65 E-value=8.3 Score=36.22 Aligned_cols=48 Identities=15% Similarity=0.261 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 809 EEFEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASA 856 (1091)
Q Consensus 809 EelEqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesL 856 (1091)
+++.+++.++...+.++..+...+..-......++.....++.+|+.|
T Consensus 12 e~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeL 59 (97)
T 2eqb_B 12 EDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDL 59 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444433333333333333333333333
No 39
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=87.36 E-value=25 Score=35.11 Aligned_cols=86 Identities=12% Similarity=0.119 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 001374 181 DKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKE 260 (1091)
Q Consensus 181 e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIenlEKEne~LK~EL~~LqeE 260 (1091)
+..+..|+++-...+.++..+..++.......+.....|.+....+.-+++++.-..+|.+..+..+..|..+|......
T Consensus 37 eR~~k~lE~r~~~deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~n 116 (147)
T 2b9c_A 37 ERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNN 116 (147)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555556666666666666677777777888888888888888888888888888888887777
Q ss_pred HHHHHH
Q 001374 261 LEIRNE 266 (1091)
Q Consensus 261 LEiL~E 266 (1091)
+..+..
T Consensus 117 lKsLE~ 122 (147)
T 2b9c_A 117 LKSLED 122 (147)
T ss_dssp HHHHHH
T ss_pred HHhhHH
Confidence 666554
No 40
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=87.30 E-value=9.3 Score=43.48 Aligned_cols=99 Identities=10% Similarity=0.083 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH----HHHHHHHHHhHHHHHHHHHHHHHH
Q 001374 812 EELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLA----ETQLKCMAESYRSLETHAQELEAE 887 (1091)
Q Consensus 812 EqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~sel----EeqLk~~~e~ledLesrL~eLeaE 887 (1091)
..++..++.|.+.|..+......+..-+..+.+.+..-..+.......+.++ +.++..+.....+-=.++..|+.-
T Consensus 63 r~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~ 142 (390)
T 1deq_A 63 QDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQRINLLQKN 142 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4567777777777777776666666666666666666666666555544443 333333333333322255556666
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhH
Q 001374 888 VNLLRAKIESLENELQDEKMSHH 910 (1091)
Q Consensus 888 lkeLqeKVesLE~ELe~ek~~~e 910 (1091)
|..+..+|..||..|+..+.-|.
T Consensus 143 l~~q~~kiqRLE~~Id~c~~~C~ 165 (390)
T 1deq_A 143 VRDQLVDMKRLEVDIDIKIRSCK 165 (390)
T ss_pred HHHHHHHHHHHHHHHHHHhcccc
Confidence 77777777777777776666655
No 41
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=87.19 E-value=15 Score=34.29 Aligned_cols=35 Identities=17% Similarity=0.266 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 001374 878 ETHAQELEAEVNLLRAKIESLENELQDEKMSHHNA 912 (1091)
Q Consensus 878 esrL~eLeaElkeLqeKVesLE~ELe~ek~~~eEl 912 (1091)
-..++.+..++.+.+....+++..+.+-..++..+
T Consensus 59 w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdkL 93 (96)
T 3q8t_A 59 QREYSEFKRQQLELDDELKSVENQMRYAQMQLDKL 93 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33455555666666666666666666655555433
No 42
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=86.90 E-value=19 Score=35.70 Aligned_cols=27 Identities=22% Similarity=0.201 Sum_probs=11.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 238 GNIEQCEREINSAKYELHIVSKELEIR 264 (1091)
Q Consensus 238 ERIenlEKEne~LK~EL~~LqeELEiL 264 (1091)
.+++.+.+++..|+.++..+++++..+
T Consensus 103 ~k~e~~~~e~~~l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 103 IKAESSAKEIKELKSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444443333
No 43
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=86.80 E-value=20 Score=33.37 Aligned_cols=72 Identities=18% Similarity=0.173 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001374 207 TLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAA 278 (1091)
Q Consensus 207 aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIenlEKEne~LK~EL~~LqeELEiL~EElE~s~qsaeal 278 (1091)
.+-..|..+...-..+..++..++.+...+...-....++...++.++...+.++..+.-.+.+....++.+
T Consensus 22 ~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdkL 93 (96)
T 3q8t_A 22 RLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLDKL 93 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333333333334444444444444444444455555555555555555555555555554444433
No 44
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=86.61 E-value=10 Score=35.33 Aligned_cols=33 Identities=9% Similarity=0.145 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 824 DLARCTENLEMTKSQLYETEQLLAEVKAQLASA 856 (1091)
Q Consensus 824 eLee~~eklEel~~qLqelE~~LeELesQLesL 856 (1091)
.+..+..++..+...+..++..+..++..+..+
T Consensus 11 ~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l 43 (112)
T 1l8d_A 11 KKTTIEEERNEITQRIGELKNKIGDLKTAIEEL 43 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333333334444444444444444333
No 45
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=86.35 E-value=7.5 Score=45.85 Aligned_cols=41 Identities=10% Similarity=0.145 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 256 IVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAEC 296 (1091)
Q Consensus 256 ~LqeELEiL~EElE~s~qsaeal~KQ~lEl~KKLaKLEaEc 296 (1091)
.|...++.|.++++...+.+.+|+..+.+...+|.+||-.+
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDI 154 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDI 154 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444443333444444444444444444444433
No 46
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=86.18 E-value=0.79 Score=54.99 Aligned_cols=118 Identities=15% Similarity=0.172 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 183 IRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELE 262 (1091)
Q Consensus 183 ~~~ELEaKLaElEkeLeelkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIenlEKEne~LK~EL~~LqeELE 262 (1091)
.|.+.+.+..+++.+|..+..+.......|...++.+..|.++...++.+...|..+...++..+.+|..+-....++.+
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~~~~~~~~e~~ 408 (575)
T 2i1j_A 329 ARERAEKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEETKNMEAAERQ 408 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------------------------------------
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 55566667777777788888888888888888888888888888888888888888888888888888887777777666
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001374 263 IRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLR 300 (1091)
Q Consensus 263 iL~EElE~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr 300 (1091)
.+..++......+..+............+++.++...+
T Consensus 409 ~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~a~ 446 (575)
T 2i1j_A 409 KLEDEIRAKQEEVSRIQQEVELKDSETRRLQEEVEDAR 446 (575)
T ss_dssp ---------------------------------CHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666555555544444444444444444444443333
No 47
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=85.78 E-value=22 Score=34.29 Aligned_cols=35 Identities=20% Similarity=0.339 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 001374 881 AQELEAEVNLLRAKIESLENELQDEKMSHHNAMAK 915 (1091)
Q Consensus 881 L~eLeaElkeLqeKVesLE~ELe~ek~~~eEleaK 915 (1091)
+.+++.|+..|..++.....+++.+++....+..+
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r 107 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRRENQVLSVR 107 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhH
Confidence 33334444444444444444444444444433333
No 48
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=85.62 E-value=17 Score=34.71 Aligned_cols=73 Identities=14% Similarity=0.120 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001374 198 LLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRS 274 (1091)
Q Consensus 198 LeelkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIenlEKEne~LK~EL~~LqeELEiL~EElE~s~qs 274 (1091)
+..++..+...++.|...+..|.++..++.+.+..+ +++.-+.....-++.++..--...+.+..+++.+...
T Consensus 26 i~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~l----E~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~q 98 (110)
T 2v4h_A 26 LEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVM----ETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQ 98 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHH
Confidence 455566666666666667777766666666544422 3444444444444444444333333344444333333
No 49
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=85.38 E-value=17 Score=33.13 Aligned_cols=78 Identities=9% Similarity=0.202 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 187 FEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIR 264 (1091)
Q Consensus 187 LEaKLaElEkeLeelkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIenlEKEne~LK~EL~~LqeELEiL 264 (1091)
|..+|..+......+..++..+...++..+..|.+=......+++++..++.-+..+--....|+..+..+.+++..+
T Consensus 5 Lr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fL 82 (86)
T 3swk_A 5 LRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFL 82 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555555554455555666666666666665555555555555555554443
No 50
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=85.37 E-value=7.2 Score=35.28 Aligned_cols=64 Identities=23% Similarity=0.369 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 001374 181 DKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCE 244 (1091)
Q Consensus 181 e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIenlE 244 (1091)
|++|..+...+...+++++.++.-.+.|..--+.+...|.++..+...++..+.+++.+.+-++
T Consensus 10 DKLRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~ 73 (78)
T 3iv1_A 10 DKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELS 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999999999999888888888888888888888877777777777777666554
No 51
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=85.29 E-value=10 Score=34.57 Aligned_cols=45 Identities=20% Similarity=0.180 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 220 IKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIR 264 (1091)
Q Consensus 220 ~EL~eeiErlEgEi~LLkERIenlEKEne~LK~EL~~LqeELEiL 264 (1091)
.+++++...+..+...+....+.+..++..|+.+....+.++..+
T Consensus 30 eELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~L 74 (81)
T 2jee_A 30 EELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333344444445555555555555555544443
No 52
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=85.19 E-value=15 Score=35.40 Aligned_cols=73 Identities=14% Similarity=0.207 Sum_probs=53.9
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 001374 176 KTKQWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELH 255 (1091)
Q Consensus 176 ~~~e~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIenlEKEne~LK~EL~ 255 (1091)
..-+|+++...+ ..+..+|.+..++...+... +....+....++..|..+++..+..+..|+..+.
T Consensus 4 t~~~~~~lq~~~----~ql~~qL~k~~~~r~~Le~~----------w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fs 69 (112)
T 1x79_B 4 TRDQVKKLQLML----RQANDQLEKTMKDKQELEDF----------IKQSSEDSSHQISALVLRAQASEILLEELQQGLS 69 (112)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788876665 55666777777666666654 5566677778888999999999999888888887
Q ss_pred HHHHHHH
Q 001374 256 IVSKELE 262 (1091)
Q Consensus 256 ~LqeELE 262 (1091)
..+....
T Consensus 70 q~q~~vq 76 (112)
T 1x79_B 70 QAKRDVQ 76 (112)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777633
No 53
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=84.40 E-value=23 Score=34.23 Aligned_cols=20 Identities=20% Similarity=0.104 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001374 886 AEVNLLRAKIESLENELQDE 905 (1091)
Q Consensus 886 aElkeLqeKVesLE~ELe~e 905 (1091)
.++..|.+..-+|+.||..=
T Consensus 103 ~EYq~LlnvKl~Ld~EIatY 122 (129)
T 3tnu_B 103 REYQELMNTKLALDVEIATY 122 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444445455555555443
No 54
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=84.34 E-value=16 Score=35.50 Aligned_cols=20 Identities=25% Similarity=0.253 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001374 886 AEVNLLRAKIESLENELQDE 905 (1091)
Q Consensus 886 aElkeLqeKVesLE~ELe~e 905 (1091)
.++..|.+..-+|+.||..=
T Consensus 105 ~EYq~Ll~vKl~Ld~EIatY 124 (131)
T 3tnu_A 105 QEYKILLDVKTRLEQEIATY 124 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555443
No 55
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=84.19 E-value=16 Score=33.35 Aligned_cols=16 Identities=31% Similarity=0.439 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 001374 810 EFEELKLEKDNLATDL 825 (1091)
Q Consensus 810 elEqLEsEkeelE~eL 825 (1091)
++..++.++..+...+
T Consensus 15 Em~~~eeel~~lke~l 30 (89)
T 3bas_A 15 EMKEQLKQMDKMKEDL 30 (89)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444433333333
No 56
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=83.22 E-value=11 Score=35.96 Aligned_cols=30 Identities=17% Similarity=0.254 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 810 EFEELKLEKDNLATDLARCTENLEMTKSQL 839 (1091)
Q Consensus 810 elEqLEsEkeelE~eLee~~eklEel~~qL 839 (1091)
++..|...+..++..|..-+..+..++..+
T Consensus 25 ei~~L~~~L~~AEeaL~~Kq~~idelk~ei 54 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVAKQELIDKLKEEA 54 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555554444444433
No 57
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=82.85 E-value=17 Score=33.29 Aligned_cols=46 Identities=15% Similarity=0.059 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 813 ELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQK 858 (1091)
Q Consensus 813 qLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqe 858 (1091)
..+.++..++.++..+...++.......+++.....|..+...|..
T Consensus 11 ~~eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ 56 (89)
T 3bas_A 11 RQEEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFG 56 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555555554444444444444
No 58
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=82.82 E-value=23 Score=41.52 Aligned_cols=6 Identities=50% Similarity=1.354 Sum_probs=3.5
Q ss_pred CCCccC
Q 001374 772 PNGCAH 777 (1091)
Q Consensus 772 ~~~c~~ 777 (1091)
+.+|.+
T Consensus 67 a~~c~~ 72 (464)
T 1m1j_B 67 AGGCKH 72 (464)
T ss_dssp CSCEEC
T ss_pred CCCccc
Confidence 456665
No 59
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=81.87 E-value=25 Score=32.79 Aligned_cols=29 Identities=17% Similarity=0.229 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 821 LATDLARCTENLEMTKSQLYETEQLLAEV 849 (1091)
Q Consensus 821 lE~eLee~~eklEel~~qLqelE~~LeEL 849 (1091)
+.+.+..++.++..+..++..++..+.++
T Consensus 11 ~i~~~~~l~~~~~~l~~q~~~l~~~~~e~ 39 (117)
T 2zqm_A 11 MLGQLESYQQQLQLVVQQKQKVQLELTEA 39 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444443333333333
No 60
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=81.79 E-value=36 Score=32.92 Aligned_cols=32 Identities=9% Similarity=0.150 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 187 FEAKIANFEQELLRSAAENATLSRSLQERSNM 218 (1091)
Q Consensus 187 LEaKLaElEkeLeelkaEl~aLeeqLEelqee 218 (1091)
|+.+|...+.-|....++-....+.+..+...
T Consensus 30 Lq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~S 61 (121)
T 3mq7_A 30 LQQELTEAQKGFQDVEAQAATANHTVMALMAS 61 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555544444433
No 61
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=81.50 E-value=17 Score=33.87 Aligned_cols=25 Identities=16% Similarity=0.205 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 832 LEMTKSQLYETEQLLAEVKAQLASA 856 (1091)
Q Consensus 832 lEel~~qLqelE~~LeELesQLesL 856 (1091)
+..+...+..+...+..++.++..+
T Consensus 12 ~~~~~~~l~~L~~~~~~l~~~i~~l 36 (112)
T 1l8d_A 12 KTTIEEERNEITQRIGELKNKIGDL 36 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 62
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=81.13 E-value=36 Score=31.97 Aligned_cols=24 Identities=13% Similarity=0.040 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 275 AEAANKQHMEGVKKIAKLEAECQR 298 (1091)
Q Consensus 275 aeal~KQ~lEl~KKLaKLEaEcqr 298 (1091)
+..+.........+..+|.+++..
T Consensus 71 Va~ar~e~~~~e~kn~~L~~qL~d 94 (97)
T 2eqb_B 71 VADARKEKYAIEILNKRLTEQLRE 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344455555566666666666544
No 63
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=80.79 E-value=37 Score=31.77 Aligned_cols=87 Identities=17% Similarity=0.246 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 218 MLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQ 297 (1091)
Q Consensus 218 eI~EL~eeiErlEgEi~LLkERIenlEKEne~LK~EL~~LqeELEiL~EElE~s~qsaeal~KQ~lEl~KKLaKLEaEcq 297 (1091)
.+..+...+.-+++.+.-..+-|....+.++.+...++.-..++.....++....+.+..+..|..++..++--+|.++.
T Consensus 21 ~~~ri~~aig~~d~ri~~NtqaI~~NS~aiaanTr~lQqh~aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~ene~a 100 (114)
T 2xzr_A 21 EIARIKKLIGAIDGRVTRNTQSIEKNSKAIAANTRTLQQHSARLDSQQRQINENHKEMKQIEDKIEEILSKIYHIENEIA 100 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhhhhHHHHhhHHHHHhchHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 33444444555555566666666666777777777777777777777777777777788888888888889999999999
Q ss_pred HHhhhhh
Q 001374 298 RLRGLVR 304 (1091)
Q Consensus 298 rLr~l~r 304 (1091)
+++.|+.
T Consensus 101 r~kkl~~ 107 (114)
T 2xzr_A 101 RIKKLIK 107 (114)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9888763
No 64
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=80.48 E-value=48 Score=37.87 Aligned_cols=27 Identities=26% Similarity=0.268 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001374 274 SAEAANKQHMEGVKKIAKLEAECQRLR 300 (1091)
Q Consensus 274 saeal~KQ~lEl~KKLaKLEaEcqrLr 300 (1091)
.++++..++.++..+|..+++++.+++
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 444 KVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444555555555556666666665554
No 65
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=80.03 E-value=19 Score=33.11 Aligned_cols=29 Identities=17% Similarity=0.285 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 001374 895 IESLENELQDEKMSHHNAMAKCKELEEQL 923 (1091)
Q Consensus 895 VesLE~ELe~ek~~~eEleaK~~eLEeQL 923 (1091)
++.++.++..+......+..++.+++.+|
T Consensus 74 ~e~i~~~i~~le~~~~~~~~~l~~lk~~l 102 (107)
T 1fxk_A 74 LETLQLREKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333444444444443
No 66
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=80.02 E-value=17 Score=36.68 Aligned_cols=60 Identities=18% Similarity=0.185 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 845 LLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVNLLRAKIESLENELQD 904 (1091)
Q Consensus 845 ~LeELesQLesLqeS~selEeqLk~~~e~ledLesrL~eLeaElkeLqeKVesLE~ELe~ 904 (1091)
.|..|+.++..++..+..++..++....-+..+.+.+..++.++..++.++..|+.|-..
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~ 128 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQ 128 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444555555555566666666677777776666666666543
No 67
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=80.00 E-value=42 Score=39.35 Aligned_cols=7 Identities=14% Similarity=0.306 Sum_probs=3.4
Q ss_pred CCCCCCc
Q 001374 769 ERYPNGC 775 (1091)
Q Consensus 769 ~~~~~~c 775 (1091)
++|-..|
T Consensus 75 ~~~G~~C 81 (464)
T 1m1j_B 75 DELGVLC 81 (464)
T ss_dssp TTTCEEE
T ss_pred CCccCcC
Confidence 3444555
No 68
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=78.02 E-value=43 Score=30.94 Aligned_cols=62 Identities=19% Similarity=0.260 Sum_probs=33.4
Q ss_pred HHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 140 AEDRAAHLDGALKECMRQIRNLKEEHEQKLQDFVLTKTKQWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQ 213 (1091)
Q Consensus 140 le~rv~hLd~aLKec~~qLr~~reeqeqki~~~~~~~~~e~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLE 213 (1091)
+..|++.|+++|. .|.-.++-+.+..++.+++-..++.+-+.-++.+..+++.++..-+-++
T Consensus 2 lan~La~le~sLe------------~EK~S~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~akidd~Lk~l~ 63 (101)
T 1d7m_A 2 MANRLAGLENSLE------------SEKVSREQLIKQKDQLNSLLASLESEGAEREKRLRELEAKLDETLKNLE 63 (101)
T ss_dssp HHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHhh------------hhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 3456666666653 2333444556666666666666665555555555555555544444333
No 69
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=77.42 E-value=52 Score=31.56 Aligned_cols=92 Identities=20% Similarity=0.200 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 001374 814 LKLEKDNLATDLARCTENLEMTKS----QLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVN 889 (1091)
Q Consensus 814 LEsEkeelE~eLee~~eklEel~~----qLqelE~~LeELesQLesLqeS~selEeqLk~~~e~ledLesrL~eLeaElk 889 (1091)
|+.....+..++..+..++..... .+..++..|..|......+..-+..+|-.-..+.-..+....-|..++..++
T Consensus 8 L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n 87 (111)
T 2v66_B 8 LQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLN 87 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHH
Confidence 344444444444444444433322 2222333333333333333333333333333333333333334444555556
Q ss_pred HHHHHHHHHHHHHHHH
Q 001374 890 LLRAKIESLENELQDE 905 (1091)
Q Consensus 890 eLqeKVesLE~ELe~e 905 (1091)
...++..-|+.||...
T Consensus 88 ~aiErnalLE~El~EK 103 (111)
T 2v66_B 88 QAIERNAFLESELDEK 103 (111)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666666677777643
No 70
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=77.31 E-value=44 Score=30.84 Aligned_cols=35 Identities=17% Similarity=0.152 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 817 EKDNLATDLARCTENLEMTKSQLYETEQLLAEVKA 851 (1091)
Q Consensus 817 EkeelE~eLee~~eklEel~~qLqelE~~LeELes 851 (1091)
++..+..+|+.+-+++..+..+-+.++.+|..+..
T Consensus 10 ~mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~ 44 (93)
T 3s4r_A 10 ELQELNDRFANLIDKVRFLEQQNKILLAELEQLKG 44 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34667777888887777777777766666655543
No 71
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=76.87 E-value=5.9 Score=39.24 Aligned_cols=96 Identities=13% Similarity=0.085 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001374 831 NLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQE-LEAEVNLLRAKIESLENELQDEKMSH 909 (1091)
Q Consensus 831 klEel~~qLqelE~~LeELesQLesLqeS~selEeqLk~~~e~ledLesrL~e-LeaElkeLqeKVesLE~ELe~ek~~~ 909 (1091)
++..+...+......+..|...+..-......+|.+...+...+++|...|.+ .+.=|...+..-..++.....++.++
T Consensus 33 ~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql 112 (135)
T 2e7s_A 33 DYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQL 112 (135)
T ss_dssp HHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555555555555555555555555666666666666555433 33222222333334444444444444
Q ss_pred HHHHHHHHHHHHHHHhh
Q 001374 910 HNAMAKCKELEEQLQRN 926 (1091)
Q Consensus 910 eEleaK~~eLEeQLe~~ 926 (1091)
.+....+..++.||...
T Consensus 113 ~e~e~ll~~lq~QL~~L 129 (135)
T 2e7s_A 113 REKDMLLDTLTLQLKNL 129 (135)
T ss_dssp THHHHCC----------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455555555555433
No 72
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=76.83 E-value=42 Score=31.15 Aligned_cols=28 Identities=32% Similarity=0.330 Sum_probs=10.9
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 001374 897 SLENELQDEKMSHHNAMAKCKELEEQLQ 924 (1091)
Q Consensus 897 sLE~ELe~ek~~~eEleaK~~eLEeQLe 924 (1091)
.++.++..+......+..++.+++.+|.
T Consensus 81 ~ie~~i~~le~~~~~l~~~l~~lk~~l~ 108 (117)
T 2zqm_A 81 TLEVRLNALERQEKKLNEKLKELTAQIQ 108 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333344444444443
No 73
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=76.79 E-value=2 Score=42.52 Aligned_cols=88 Identities=16% Similarity=0.137 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhcc----cchhHh-hhhhhHHHHHHHHHHHHHHHHH
Q 001374 886 AEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNENCAVC----SSEADE-NKIKQDRDLAAAAERLAECQET 960 (1091)
Q Consensus 886 aElkeLqeKVesLE~ELe~ek~~~eEleaK~~eLEeQLe~~~~~~lk----~q~dkd-LKikqEkEIaaAeeKLAEcQeT 960 (1091)
.++......+..|..++..++..-...+.....++.+|+........ ...+.- -....+.....+...+.+.+.-
T Consensus 39 ~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~l 118 (135)
T 2e7s_A 39 RELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLREKDML 118 (135)
T ss_dssp HHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHHC
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444445566666666666667777777777777766641111 111100 0223344556666777777777
Q ss_pred HHHHHHHHHhhcC
Q 001374 961 ILLLGKQLKSLRP 973 (1091)
Q Consensus 961 I~sLEKQLKsLa~ 973 (1091)
|..+..||+.|..
T Consensus 119 l~~lq~QL~~LK~ 131 (135)
T 2e7s_A 119 LDTLTLQLKNLKK 131 (135)
T ss_dssp C------------
T ss_pred HHHHHHHHHHHHH
Confidence 8888888877754
No 74
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=75.19 E-value=78 Score=37.31 Aligned_cols=33 Identities=21% Similarity=0.399 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 184 RLEFEAKIANFEQELLRSAAENATLSRSLQERS 216 (1091)
Q Consensus 184 ~~ELEaKLaElEkeLeelkaEl~aLeeqLEelq 216 (1091)
....+++|+..+++|++.++.+.......+...
T Consensus 4 ~a~yq~~la~yq~elarvqkana~aka~Ye~~~ 36 (497)
T 3iox_A 4 EADYQAKLTAYQTELARVQKANADAKAAYEAAV 36 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888888888877766655443
No 75
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=74.19 E-value=20 Score=38.53 Aligned_cols=72 Identities=15% Similarity=0.082 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 195 EQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNE 266 (1091)
Q Consensus 195 EkeLeelkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIenlEKEne~LK~EL~~LqeELEiL~E 266 (1091)
....+.+-.++.-|.-+..-+..+|.+|..+++++..-...+-.|+..++++-..|..+|..++.+++.+.+
T Consensus 155 kk~~~~i~~~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Rief~qE 226 (242)
T 3uux_B 155 KSFSQTLVNSLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRLDFLEE 226 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 334444455556666666777888999999999999999999999999999999999999999988777665
No 76
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=74.07 E-value=18 Score=32.82 Aligned_cols=20 Identities=25% Similarity=0.295 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001374 196 QELLRSAAENATLSRSLQER 215 (1091)
Q Consensus 196 keLeelkaEl~aLeeqLEel 215 (1091)
.++..+...+..|...+..+
T Consensus 13 ~klq~~E~rN~~Le~~v~~l 32 (79)
T 3cvf_A 13 QKVQDLETRNAELEHQLRAM 32 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHH
Confidence 33333333333333333333
No 77
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=73.34 E-value=24 Score=33.48 Aligned_cols=67 Identities=16% Similarity=0.170 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 001374 240 IEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLVRKK 306 (1091)
Q Consensus 240 IenlEKEne~LK~EL~~LqeELEiL~EElE~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l~rk~ 306 (1091)
...+..+...|.|++..+.-.++...+....+++......+........+..|..++..++.-++-|
T Consensus 18 nAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~qR 84 (103)
T 4h22_A 18 NAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQR 84 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677777777777777777777777777777777777777777777777776666665544
No 78
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=72.57 E-value=45 Score=33.65 Aligned_cols=67 Identities=12% Similarity=0.126 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 001374 190 KIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHI 256 (1091)
Q Consensus 190 KLaElEkeLeelkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIenlEKEne~LK~EL~~ 256 (1091)
.|..++.++..++.++..+...+......+..+..++.-+.-+++++..++..+++++..|=.+.-.
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~ 135 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLK 135 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666666666667777777777777777777777777788888888888888888777655443
No 79
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=72.50 E-value=53 Score=30.34 Aligned_cols=34 Identities=15% Similarity=0.053 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 825 LARCTENLEMTKSQLYETEQLLAEVKAQLASAQK 858 (1091)
Q Consensus 825 Lee~~eklEel~~qLqelE~~LeELesQLesLqe 858 (1091)
+..+++++..-....+.+++.-..|+.++..++.
T Consensus 11 mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~ 44 (93)
T 3s4r_A 11 LQELNDRFANLIDKVRFLEQQNKILLAELEQLKG 44 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556666777677777777666666666655543
No 80
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=71.93 E-value=5.8 Score=47.61 Aligned_cols=162 Identities=13% Similarity=0.132 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 001374 809 EEFEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEV 888 (1091)
Q Consensus 809 EelEqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selEeqLk~~~e~ledLesrL~eLeaEl 888 (1091)
-+|.+|++.-.+-..+.+.=+.++..-+....+++....+|+.++..+++....+...+....+....|...+...+.+.
T Consensus 300 ~e~qqm~~~a~e~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~ 379 (575)
T 2i1j_A 300 IDVQQMKAQAREEKLAKQAQREKLQLEIAARERAEKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAK 379 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 36677766666555555544455555555566666777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhcccchhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 889 NLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNENCAVCSSEADENKIKQDRDLAAAAERLAECQETILLLGKQL 968 (1091)
Q Consensus 889 keLqeKVesLE~ELe~ek~~~eEleaK~~eLEeQLe~~~~~~lk~q~dkdLKikqEkEIaaAeeKLAEcQeTI~sLEKQL 968 (1091)
..|..+-..++.++..+..........-..|+.++........... +-....+.+-..+..++...|.........|
T Consensus 380 ~~l~~~~~~~e~~~~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~---~~~~~~~~e~~~~~~~~~~a~~~~~~~~~~l 456 (575)
T 2i1j_A 380 EELEQRQNELQAMMQRLEETKNMEAAERQKLEDEIRAKQEEVSRIQ---QEVELKDSETRRLQEEVEDARRKQDEAAAAL 456 (575)
T ss_dssp -----------------------------------------------------------------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777776666555444444444444443332000000 0011122233344445555555555555555
Q ss_pred HhhcC
Q 001374 969 KSLRP 973 (1091)
Q Consensus 969 KsLa~ 973 (1091)
.....
T Consensus 457 ~~~~~ 461 (575)
T 2i1j_A 457 LAATT 461 (575)
T ss_dssp HTTSC
T ss_pred HHhcc
Confidence 55443
No 81
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=71.25 E-value=1.9 Score=40.76 Aligned_cols=75 Identities=25% Similarity=0.371 Sum_probs=48.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 001374 232 EIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSA-------EAANKQHMEGVKKIAKLEAECQRLRGLVR 304 (1091)
Q Consensus 232 Ei~LLkERIenlEKEne~LK~EL~~LqeELEiL~EElE~s~qsa-------eal~KQ~lEl~KKLaKLEaEcqrLr~l~r 304 (1091)
++..+..+|+.++.++.+|+.++..++-+++.+.-.-++..... .=+..-+....+.+.+|.++|.+|+..||
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v~ 92 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLR 92 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556777888888888888888888877766432222211000 00111122245889999999999999998
Q ss_pred cc
Q 001374 305 KK 306 (1091)
Q Consensus 305 k~ 306 (1091)
+-
T Consensus 93 ~l 94 (100)
T 1go4_E 93 AM 94 (100)
T ss_dssp TC
T ss_pred HH
Confidence 74
No 82
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=71.03 E-value=40 Score=30.07 Aligned_cols=20 Identities=15% Similarity=0.197 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001374 885 EAEVNLLRAKIESLENELQD 904 (1091)
Q Consensus 885 eaElkeLqeKVesLE~ELe~ 904 (1091)
+.+++.+.+.++.-=.||..
T Consensus 41 ~~Elk~~~e~Ld~KI~eL~e 60 (72)
T 3cve_A 41 RSNLKTLLEILDGKIFELTE 60 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHH
Confidence 33333333333333333333
No 83
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=69.06 E-value=83 Score=30.18 Aligned_cols=65 Identities=14% Similarity=0.126 Sum_probs=33.5
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001374 236 LKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLR 300 (1091)
Q Consensus 236 LkERIenlEKEne~LK~EL~~LqeELEiL~EElE~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr 300 (1091)
|+..+..+...+..|+..|..++..-+.+.........+++.....+.....+.+=||.++..-.
T Consensus 40 Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiErnalLE~El~EKe 104 (111)
T 2v66_B 40 LEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELDEKE 104 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444445555666666666666666666665433
No 84
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=68.88 E-value=31 Score=32.21 Aligned_cols=73 Identities=14% Similarity=0.120 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001374 198 LLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRS 274 (1091)
Q Consensus 198 LeelkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIenlEKEne~LK~EL~~LqeELEiL~EElE~s~qs 274 (1091)
+..+...+....+.+...+..|.++.+.+.+.+..+ +++.-+.....-++..+..--...+.+..+++.+...
T Consensus 4 ~~~L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~----E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~q 76 (94)
T 3jsv_C 4 LEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVM----ETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQ 76 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 344555555566666666666666666655555333 3455555555555555544444444444444444333
No 85
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=67.75 E-value=70 Score=28.81 Aligned_cols=46 Identities=13% Similarity=0.297 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 810 EFEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQK 858 (1091)
Q Consensus 810 elEqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqe 858 (1091)
+++.+++.+..++..+.++..... .++......|..++.++..++.
T Consensus 2 el~~l~~~~~sLE~~l~e~e~~~~---~~~~~~q~~i~~lE~eL~~~r~ 47 (84)
T 1gk4_A 2 EVDALKGTNESLERQMREMEENFA---VEAANYQDTIGRLQDEIQNMKE 47 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 456666677777777766665443 2344445555555555555544
No 86
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=67.35 E-value=36 Score=31.82 Aligned_cols=28 Identities=25% Similarity=0.372 Sum_probs=11.2
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 001374 897 SLENELQDEKMSHHNAMAKCKELEEQLQ 924 (1091)
Q Consensus 897 sLE~ELe~ek~~~eEleaK~~eLEeQLe 924 (1091)
-++.+...+|..-+.+..+...|+.++.
T Consensus 51 IY~~DF~aERadREkl~~eKe~L~~ql~ 78 (94)
T 3jsv_C 51 IYKADFQAERHAREKLVEKKEYLQEQLE 78 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3334444444444444444444444433
No 87
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=67.20 E-value=1e+02 Score=30.41 Aligned_cols=75 Identities=21% Similarity=0.231 Sum_probs=39.2
Q ss_pred HHHHhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 141 EDRAAHLDGALKECMRQIRNLKEEHEQKLQDFVLTKTKQWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLI 220 (1091)
Q Consensus 141 e~rv~hLd~aLKec~~qLr~~reeqeqki~~~~~~~~~e~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLEelqeeI~ 220 (1091)
+++|+.|+.-++..-++|.--++|-+ +|.+--.|-.-..-.++..=.-.++++.++++++..+++.++.....+.
T Consensus 10 ~~~ia~L~~D~~s~~~eleEnqeEL~-----iVgkML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~Lk 84 (167)
T 4gkw_A 10 EDEVADLKQDTESLQKQLEENQEELE-----IVGNMLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLLK 84 (167)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34566666666666655555444433 3333222222222333333344466677777777777776666655543
No 88
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=66.20 E-value=41 Score=31.86 Aligned_cols=28 Identities=25% Similarity=0.347 Sum_probs=16.4
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHh
Q 001374 898 LENELQDEKMSHHNAMAKCKELEEQLQR 925 (1091)
Q Consensus 898 LE~ELe~ek~~~eEleaK~~eLEeQLe~ 925 (1091)
...+++..+..+..+..++..|+.+|..
T Consensus 56 K~re~e~~Kr~~~~L~~~~~~lk~~L~q 83 (103)
T 4h22_A 56 KNKEFEREKHAHSILQFQFAEVKEALKQ 83 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555666666666666666654
No 89
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=66.05 E-value=39 Score=30.61 Aligned_cols=64 Identities=23% Similarity=0.235 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 162 KEEHEQKLQDFVLTKTKQWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEK 226 (1091)
Q Consensus 162 reeqeqki~~~~~~~~~e~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLEelqeeI~EL~eei 226 (1091)
+++-.+|++++ -....+|+.--..++..+.+...+-..++.++..+-..++-.-.++.++...+
T Consensus 8 ~e~~~~klq~~-E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgL 71 (79)
T 3cvf_A 8 REETQQKVQDL-ETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGL 71 (79)
T ss_dssp --CTTHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 44444555555 33444444444444555544444444444444444444444444444443333
No 90
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=65.99 E-value=80 Score=28.83 Aligned_cols=28 Identities=7% Similarity=0.124 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 001374 888 VNLLRAKIESLENELQDEKMSHHNAMAK 915 (1091)
Q Consensus 888 lkeLqeKVesLE~ELe~ek~~~eEleaK 915 (1091)
...+...|..|+..+.+++..+.++...
T Consensus 74 ~e~i~~~i~~le~~~~~~~~~l~~lk~~ 101 (107)
T 1fxk_A 74 LETLQLREKTIERQEERVMKKLQEMQVN 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444433
No 91
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=65.43 E-value=43 Score=30.41 Aligned_cols=46 Identities=17% Similarity=0.266 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 810 EFEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQK 858 (1091)
Q Consensus 810 elEqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqe 858 (1091)
+++.+++.+..++..+.++...+ ..++..+...|..++.++..++.
T Consensus 4 eie~L~~q~~~Le~~l~e~E~~~---~~~l~~~q~~i~~lE~el~~~r~ 49 (86)
T 1x8y_A 4 QLSQLQCQLAAKEAKLRDLEDSL---ARERDTSRRLLAEKEREMAEMRA 49 (86)
T ss_dssp --------CTTHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555433 22334444444444444444443
No 92
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=64.99 E-value=99 Score=29.54 Aligned_cols=35 Identities=14% Similarity=0.209 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 001374 885 EAEVNLLRAKIESLENELQDEKMSHHNAMAKCKEL 919 (1091)
Q Consensus 885 eaElkeLqeKVesLE~ELe~ek~~~eEleaK~~eL 919 (1091)
+.++..+...+..++..+.+++..+..+...++++
T Consensus 94 ~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~ 128 (133)
T 1fxk_C 94 KSQKNELESTLQKMGENLRAITDIMMKLSPQAEEL 128 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444443
No 93
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=64.07 E-value=1.2e+02 Score=35.47 Aligned_cols=130 Identities=10% Similarity=0.147 Sum_probs=70.0
Q ss_pred ccccchhhhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH----HH
Q 001374 795 AAYESETTACKFSLEEFEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLK----CM 870 (1091)
Q Consensus 795 ~~~~~~~~~~~~s~EelEqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selEeqLk----~~ 870 (1091)
.||.++...- +.=..+...+.++.+.|..+......+-.-...+.+.+..-..+.......+.++.++|+ .+
T Consensus 48 SGCrLqglL~----kqerdv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~yI 123 (491)
T 1m1j_A 48 SGCRMQGIID----DTDQNYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGHVSTELRRRIVTL 123 (491)
T ss_dssp CSTTHHHHHH----HHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccchhhHHH----HhhhhHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHH
Confidence 3566655322 223346777777777777777666666666666666666666666666555544333333 33
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH----------HHHHHHHHHHHHhhhh
Q 001374 871 AESYRSLETHAQELEAEVNLLRAKIESLENELQDEKMSHHNA----------MAKCKELEEQLQRNEN 928 (1091)
Q Consensus 871 ~e~ledLesrL~eLeaElkeLqeKVesLE~ELe~ek~~~eEl----------eaK~~eLEeQLe~~~~ 928 (1091)
......-=.+|..|+.-|..+..+|..||..|.-....|..- ..-+..+|.||+.+..
T Consensus 124 K~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~~q~~~Cr~pC~r~~~y~VD~~~Ye~~QKqLeQv~a 191 (491)
T 1m1j_A 124 KQRVATQVNRIKALQNSIQEQVVEMKRLEVDIDIKIRACKGSCARSFDYQVDKEGYDNIQKHLTQASS 191 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTBSSCCCCCCCTTTTHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHhhhcHHHHHHHHHHHHHhhc
Confidence 322222224444444555555555555555554444443311 1124567777777654
No 94
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=63.67 E-value=94 Score=35.88 Aligned_cols=36 Identities=22% Similarity=0.222 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhh
Q 001374 892 RAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNE 927 (1091)
Q Consensus 892 qeKVesLE~ELe~ek~~~eEleaK~~eLEeQLe~~~ 927 (1091)
+..+...+..|..++..+..+..+|..|+.+|....
T Consensus 97 e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~ 132 (409)
T 1m1j_C 97 ENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLE 132 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 333333444444444444445555555555554443
No 95
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=62.83 E-value=2.4e+02 Score=33.15 Aligned_cols=39 Identities=26% Similarity=0.449 Sum_probs=20.6
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 176 KTKQWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEE 225 (1091)
Q Consensus 176 ~~~e~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLEelqeeI~EL~ee 225 (1091)
..-+|++++ +++...++++..+...++.++..+.....+
T Consensus 347 evae~~~lr-----------QRlddArNEItsaeSaInslqaqvSa~t~e 385 (602)
T 1cii_A 347 EVAEWDKLR-----------QRLLDARNKITSAESAVNSARNNLSARTNE 385 (602)
T ss_dssp HHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445788877 234444555555555555555444444433
No 96
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=62.15 E-value=92 Score=35.94 Aligned_cols=38 Identities=16% Similarity=0.059 Sum_probs=16.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 869 CMAESYRSLETHAQELEAEVNLLRAKIESLENELQDEK 906 (1091)
Q Consensus 869 ~~~e~ledLesrL~eLeaElkeLqeKVesLE~ELe~ek 906 (1091)
.|.+++..++..+...+.++..|+..+..++..|+.++
T Consensus 88 kml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~ 125 (409)
T 1m1j_C 88 KIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLK 125 (409)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHH
Confidence 33333333344444444444444444444444444333
No 97
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=62.07 E-value=2.1e+02 Score=33.48 Aligned_cols=68 Identities=12% Similarity=0.072 Sum_probs=42.5
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001374 236 LKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLV 303 (1091)
Q Consensus 236 LkERIenlEKEne~LK~EL~~LqeELEiL~EElE~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l~ 303 (1091)
++.++.....+-..+.+-...|...+..|.+..+..-+.+..++..+.....+|.+||..+.--...-
T Consensus 95 lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~~q~~~C 162 (491)
T 1m1j_A 95 LKPGLEGAQQLDENYGHVSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDIDIKIRAC 162 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444444444444444455555666666666666567777788888888888888887765544443
No 98
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=61.97 E-value=72 Score=30.92 Aligned_cols=63 Identities=16% Similarity=0.182 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 001374 191 IANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHI 256 (1091)
Q Consensus 191 LaElEkeLeelkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIenlEKEne~LK~EL~~ 256 (1091)
|..+..+++.++.++..+ ..+.+..+..+...+..+++++.....-.+...-++..|+.++..
T Consensus 17 Ie~Lkreie~lk~ele~l---~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~ 79 (120)
T 3i00_A 17 IERLYREISGLKAQLENM---KTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDE 79 (120)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444333 223333344444444444444443333333333344444444443
No 99
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=61.83 E-value=1.9e+02 Score=34.74 Aligned_cols=30 Identities=27% Similarity=0.268 Sum_probs=20.6
Q ss_pred HHHHhhhhhhHHHHHhhhhHHHHHHHHHHH
Q 001374 130 LESVTLSKLTAEDRAAHLDGALKECMRQIR 159 (1091)
Q Consensus 130 Le~~~~q~~~le~rv~hLd~aLKec~~qLr 159 (1091)
|....+.+...++.+-+.|.+|.+..+++-
T Consensus 461 l~~fl~~~~~~~~~ilq~d~~l~~~~k~~~ 490 (592)
T 1f5n_A 461 LQTYLKSKESMTDAILQTDQTLTEKEKEIE 490 (592)
T ss_dssp HHHHHHHTHHHHHHHHHHCSSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666667777777777888777766553
No 100
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=60.81 E-value=1.2e+02 Score=29.14 Aligned_cols=62 Identities=11% Similarity=0.149 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Q 001374 809 EEFEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAES 873 (1091)
Q Consensus 809 EelEqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selEeqLk~~~e~ 873 (1091)
.++++|..++..+...|......-..+... ....-++-+.++..|.......|..|..+...
T Consensus 6 ~~~~~lq~~~~ql~~qL~k~~~~r~~Le~~---w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~ 67 (112)
T 1x79_B 6 DQVKKLQLMLRQANDQLEKTMKDKQELEDF---IKQSSEDSSHQISALVLRAQASEILLEELQQG 67 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555444444333333333 22223344444444444333344444443333
No 101
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=60.09 E-value=24 Score=31.69 Aligned_cols=50 Identities=16% Similarity=0.147 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 001374 195 EQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCE 244 (1091)
Q Consensus 195 EkeLeelkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIenlE 244 (1091)
+.++..+...+.-++..++.++..+.+....+.++..++..+.+|+...+
T Consensus 13 e~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 13 EARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444445555555566666666666666666666666666666665544
No 102
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=59.64 E-value=1.3e+02 Score=35.16 Aligned_cols=34 Identities=18% Similarity=0.125 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 825 LARCTENLEMTKSQLYETEQLLAEVKAQLASAQK 858 (1091)
Q Consensus 825 Lee~~eklEel~~qLqelE~~LeELesQLesLqe 858 (1091)
|+.+...+..+.+.-.+++..+..|+......+.
T Consensus 97 l~~Le~~l~~isn~Ts~a~~~v~~ik~s~~~~q~ 130 (461)
T 3ghg_B 97 VDELNNNVEAVSQTSSSSFQYMYLLKDLWQKRQK 130 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccC
Confidence 3333333333334444444444444444444433
No 103
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=59.50 E-value=1.2e+02 Score=28.85 Aligned_cols=39 Identities=15% Similarity=0.170 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Q 001374 887 EVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQR 925 (1091)
Q Consensus 887 ElkeLqeKVesLE~ELe~ek~~~eEleaK~~eLEeQLe~ 925 (1091)
-+.-+..+++.++..++.+...+..+..++..++++|..
T Consensus 89 A~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~ 127 (133)
T 1fxk_C 89 AMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEE 127 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555543
No 104
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=59.28 E-value=87 Score=28.50 Aligned_cols=29 Identities=21% Similarity=0.305 Sum_probs=12.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 001374 866 QLKCMAESYRSLETHAQELEAEVNLLRAK 894 (1091)
Q Consensus 866 qLk~~~e~ledLesrL~eLeaElkeLqeK 894 (1091)
.++...+.+..+..+|....+++..++.+
T Consensus 48 KLKsTK~El~~Lq~qLe~kd~ei~rL~~~ 76 (81)
T 3qh9_A 48 KLKATKAEVAQLQEQVALKDAEIERLHSQ 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 44443333444444444444444444443
No 105
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=58.45 E-value=2.7e+02 Score=32.83 Aligned_cols=27 Identities=15% Similarity=-0.011 Sum_probs=13.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 270 MSMRSAEAANKQHMEGVKKIAKLEAEC 296 (1091)
Q Consensus 270 ~s~qsaeal~KQ~lEl~KKLaKLEaEc 296 (1091)
...+.++.-+++..+...+++..+.++
T Consensus 70 kY~~dlakY~~~~AeY~~kl~aYe~~~ 96 (497)
T 3iox_A 70 KYQADLAKYQKDLADYPVKLKAYEDEQ 96 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555666655543
No 106
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=58.12 E-value=52 Score=29.63 Aligned_cols=49 Identities=31% Similarity=0.407 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Q 001374 877 LETHAQELEAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQR 925 (1091)
Q Consensus 877 LesrL~eLeaElkeLqeKVesLE~ELe~ek~~~eEleaK~~eLEeQLe~ 925 (1091)
+...-+.|-+++.+|-...+.|..|+...+.....+..|+.++++++.+
T Consensus 28 Lnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElkr 76 (77)
T 2w83_C 28 LNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELRK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4445556678888888888889999998888888889999998888764
No 107
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=56.98 E-value=1.3e+02 Score=28.42 Aligned_cols=35 Identities=20% Similarity=0.207 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 188 EAKIANFEQELLRSAAENATLSRSLQERSNMLIKI 222 (1091)
Q Consensus 188 EaKLaElEkeLeelkaEl~aLeeqLEelqeeI~EL 222 (1091)
=.+.++..++|...+.....+.+...++...+.++
T Consensus 7 LRK~aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~~ 41 (107)
T 2no2_A 7 LRKNAEVTKQVSMARQAQVDLEREKKELEDSLERI 41 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555444444444443
No 108
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=55.51 E-value=60 Score=29.54 Aligned_cols=37 Identities=22% Similarity=0.229 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhc-cCCChHHH
Q 001374 277 AANKQHMEGVKKIAKLEAECQRLRGLVRK-KLPGPAAL 313 (1091)
Q Consensus 277 al~KQ~lEl~KKLaKLEaEcqrLr~l~rk-~lpgpaa~ 313 (1091)
...+++.+..++...|.+++..++.-++- +.+|.+|+
T Consensus 42 ~~eskL~eae~rn~eL~~e~~~l~~~~eelq~~~~~~~ 79 (81)
T 1wt6_A 42 NFASQLREAEARNRDLEAHVRQLQERMELLQAEGATAV 79 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhc
Confidence 33334444444444444444444333333 56777764
No 109
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=55.14 E-value=74 Score=28.65 Aligned_cols=63 Identities=14% Similarity=0.139 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 001374 199 LRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKEL 261 (1091)
Q Consensus 199 eelkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIenlEKEne~LK~EL~~LqeEL 261 (1091)
+.+-.++..|-.....++-.-.+|..+++.+.++..+++..+..+..-..+++..+..+++++
T Consensus 12 EnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeEl 74 (77)
T 2w83_C 12 ENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEEL 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333433333333333333344444555555555555555555555555555555555443
No 110
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=55.01 E-value=74 Score=30.84 Aligned_cols=46 Identities=24% Similarity=0.143 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 810 EFEELKLEKDNLATDLARC----TENLEMTKSQLYETEQLLAEVKAQLAS 855 (1091)
Q Consensus 810 elEqLEsEkeelE~eLee~----~eklEel~~qLqelE~~LeELesQLes 855 (1091)
.|+.|..++..+..+++.+ +..+..+..++..++..|.+-..+.+.
T Consensus 16 ~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~ 65 (120)
T 3i00_A 16 LIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQ 65 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666544 333444444444444444444433333
No 111
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=54.44 E-value=67 Score=37.16 Aligned_cols=48 Identities=15% Similarity=0.104 Sum_probs=39.3
Q ss_pred cchhhHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhHHHHhhhhhhHHHHHhhhhHHHHH
Q 001374 95 ISAKEDLVKQHTKVAEEAVSGWEKAEAEALALKNHLESVTLSKLTAEDRAAHLDGALKE 153 (1091)
Q Consensus 95 ~~~kd~lvkqh~kvaeeav~gwekae~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLKe 153 (1091)
|--+|-|+||+..|= ..+..|+..|+.+.+.=....+.|.+|-..++.
T Consensus 23 Cgl~d~L~kye~~V~-----------~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~~~ 70 (411)
T 3ghg_C 23 CGIADFLSTYQTKVD-----------KDLQSLEDILHQVENKTSEVKQLIKAIQLTYNP 70 (411)
T ss_dssp HHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred chHHHHHHHhccchh-----------hHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcc
Confidence 556888999998885 458889999999999999999998887766554
No 112
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=54.07 E-value=1.4e+02 Score=27.92 Aligned_cols=43 Identities=14% Similarity=0.240 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhh
Q 001374 885 EAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNE 927 (1091)
Q Consensus 885 eaElkeLqeKVesLE~ELe~ek~~~eEleaK~~eLEeQLe~~~ 927 (1091)
.++++.++.+|..=-+|+.....+++++..++=.++.++-+++
T Consensus 61 ~aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~ene~ar~k 103 (114)
T 2xzr_A 61 SARLDSQQRQINENHKEMKQIEDKIEEILSKIYHIENEIARIK 103 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3444444444444444444455555555555555555554444
No 113
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=53.89 E-value=61 Score=28.77 Aligned_cols=29 Identities=24% Similarity=0.288 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 873 SYRSLETHAQELEAEVNLLRAKIESLENE 901 (1091)
Q Consensus 873 ~ledLesrL~eLeaElkeLqeKVesLE~E 901 (1091)
-++-+...+-.+++|.+-|+.|+..+++|
T Consensus 47 d~ErLNDEiislNIENNlL~~rl~~l~~E 75 (75)
T 3a7o_A 47 NTERLNDELISGTIENNVLQQKLSDLKKE 75 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred cHHHhhHHHHHhHHHHHHHHHHHHHHhcC
Confidence 34445667777788888888887776654
No 114
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=53.68 E-value=62 Score=32.40 Aligned_cols=47 Identities=19% Similarity=0.199 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhh
Q 001374 882 QELEAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNEN 928 (1091)
Q Consensus 882 ~eLeaElkeLqeKVesLE~ELe~ek~~~eEleaK~~eLEeQLe~~~~ 928 (1091)
+.++..+..+...+...+..+......+..+.+++..|+.++..++.
T Consensus 62 ~~le~~~~~l~rdleasr~akk~~ea~la~l~~~~~~LeAE~aKLeE 108 (146)
T 2xnx_M 62 NVLEKELEAITREQEINRNLLGNAKLELDQLSSEKEQLTIEKAKLEE 108 (146)
T ss_dssp HHHTTTTTTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred hhhHhhHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555555666665555443
No 115
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=53.57 E-value=32 Score=30.67 Aligned_cols=24 Identities=13% Similarity=0.300 Sum_probs=9.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 873 SYRSLETHAQELEAEVNLLRAKIE 896 (1091)
Q Consensus 873 ~ledLesrL~eLeaElkeLqeKVe 896 (1091)
.++.++.++.+++.++.+|+.+++
T Consensus 41 ~I~eLEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 41 LIDELELELDQKDELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444433333
No 116
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=51.78 E-value=53 Score=31.00 Aligned_cols=18 Identities=28% Similarity=0.418 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001374 808 LEEFEELKLEKDNLATDL 825 (1091)
Q Consensus 808 ~EelEqLEsEkeelE~eL 825 (1091)
.+++..++.++..++.+-
T Consensus 11 ~e~~~~lr~ei~~Le~E~ 28 (100)
T 1go4_E 11 REEADTLRLKVEELEGER 28 (100)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 344444444444443333
No 117
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=51.31 E-value=50 Score=29.48 Aligned_cols=49 Identities=14% Similarity=0.102 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001374 255 HIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLV 303 (1091)
Q Consensus 255 ~~LqeELEiL~EElE~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l~ 303 (1091)
..++..+....+++......+..+.+++.+....|..|..+|.+++..+
T Consensus 22 ~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrSVl 70 (72)
T 3nmd_A 22 RDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYRSVI 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 3344444444444444444555666666666666666666666665544
No 118
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=51.04 E-value=50 Score=29.66 Aligned_cols=52 Identities=15% Similarity=0.035 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 001374 813 ELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAE 864 (1091)
Q Consensus 813 qLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selE 864 (1091)
.++..+.+++.++....+.|+.+...+-.....|..|+.++..+...+..++
T Consensus 11 ~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 11 ELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5667777788888777777777777777777777777777777666444433
No 119
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=49.40 E-value=1e+02 Score=27.95 Aligned_cols=23 Identities=17% Similarity=0.060 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 001374 886 AEVNLLRAKIESLENELQDEKMS 908 (1091)
Q Consensus 886 aElkeLqeKVesLE~ELe~ek~~ 908 (1091)
.++..|.+..-+|+.||..=++.
T Consensus 56 ~EYq~LlnvK~~Le~EIatYRkL 78 (86)
T 1x8y_A 56 DEYQELLDIKLALDMEIHAYRKL 78 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHH
Confidence 34444444444455554443333
No 120
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=49.01 E-value=1e+02 Score=26.82 Aligned_cols=20 Identities=25% Similarity=0.361 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001374 885 EAEVNLLRAKIESLENELQD 904 (1091)
Q Consensus 885 eaElkeLqeKVesLE~ELe~ 904 (1091)
+.++.++...|.+|+.||+.
T Consensus 55 k~Ei~elrr~iq~L~~el~s 74 (77)
T 3trt_A 55 KQESTEYRRQVQSLTMEVDA 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444443
No 121
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=48.91 E-value=1e+02 Score=27.51 Aligned_cols=63 Identities=17% Similarity=0.147 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 204 ENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNE 266 (1091)
Q Consensus 204 El~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIenlEKEne~LK~EL~~LqeELEiL~E 266 (1091)
++.-+.-+..-+..+|.++.-+++++.+-..+.=.|+..++++-..|+..|..+..+++.+.+
T Consensus 8 ~Leml~IrKnma~sEI~EID~Ki~nL~~mR~ivldRlA~lEqdE~~LE~~l~~i~~rle~~qe 70 (72)
T 2xu6_A 8 SLEFLNIQKNSTMSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLMLEDNLKQIDDRLDFLEE 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-------
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 344444555566777888888888888888888888888888888888888888777666543
No 122
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=48.21 E-value=1.2e+02 Score=27.63 Aligned_cols=54 Identities=26% Similarity=0.291 Sum_probs=36.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Q 001374 872 ESYRSLETHAQELEAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQR 925 (1091)
Q Consensus 872 e~ledLesrL~eLeaElkeLqeKVesLE~ELe~ek~~~eEleaK~~eLEeQLe~ 925 (1091)
..+++|.-++.+++.|-.+...|+.+-+.|+..++.++..-.+.+.-|+.+|.+
T Consensus 26 qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l~~ 79 (81)
T 3qh9_A 26 QELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQLSR 79 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 344455556666666666666677777777777777777777777777777653
No 123
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=48.17 E-value=1.3e+02 Score=27.38 Aligned_cols=18 Identities=22% Similarity=0.362 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001374 886 AEVNLLRAKIESLENELQ 903 (1091)
Q Consensus 886 aElkeLqeKVesLE~ELe 903 (1091)
.+...|...+..++.+++
T Consensus 52 ~rn~eL~~e~~~l~~~~e 69 (81)
T 1wt6_A 52 ARNRDLEAHVRQLQERME 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 124
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=47.48 E-value=53 Score=32.38 Aligned_cols=41 Identities=15% Similarity=0.216 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 001374 884 LEAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQ 924 (1091)
Q Consensus 884 LeaElkeLqeKVesLE~ELe~ek~~~eEleaK~~eLEeQLe 924 (1091)
++.++..+...+..++..+.+++..+..+...+.+++.++.
T Consensus 103 l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~~~~ 143 (151)
T 2zdi_C 103 LEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQKQS 143 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555555555555554433
No 125
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=47.34 E-value=2e+02 Score=33.65 Aligned_cols=54 Identities=17% Similarity=0.204 Sum_probs=44.2
Q ss_pred hcchhhHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhHHHHhhhhhhHHHHHhhhhHHHHHHHHHH
Q 001374 94 EISAKEDLVKQHTKVAEEAVSGWEKAEAEALALKNHLESVTLSKLTAEDRAAHLDGALKECMRQI 158 (1091)
Q Consensus 94 ~~~~kd~lvkqh~kvaeeav~gwekae~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLKec~~qL 158 (1091)
.|--+|-|+||+..|= ..+..|+..|+.+.+.=....+.|.+|-..++.--++.
T Consensus 79 tCglad~L~kye~~V~-----------~dl~~Le~~l~~isn~Ts~a~~~v~~ik~s~~~~q~~~ 132 (461)
T 3ghg_B 79 GCQLQEALLQQERPIR-----------NSVDELNNNVEAVSQTSSSSFQYMYLLKDLWQKRQKQV 132 (461)
T ss_dssp HHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHhcccchh-----------hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccCCC
Confidence 3667899999998885 45889999999999999999999998888777655443
No 126
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=47.26 E-value=1.6e+02 Score=31.65 Aligned_cols=61 Identities=15% Similarity=0.131 Sum_probs=25.5
Q ss_pred ccccchhhhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 795 AAYESETTACKFSLEEFEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQK 858 (1091)
Q Consensus 795 ~~~~~~~~~~~~s~EelEqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqe 858 (1091)
+|++....+.-|+.- .|+.++..+..+|+.+.-+-......|.++..+|+.|+.....+-.
T Consensus 138 ~gi~~e~I~~SYSl~---~Lkk~~~~i~~~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~ 198 (242)
T 3uux_B 138 PGVETAAISSSYSPS---ALKSFSQTLVNSLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLG 198 (242)
T ss_dssp -CCCCCGGGGSCCSH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHhcccccHH---HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445545443 3333334444444433333333444444444444444444433333
No 127
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=46.69 E-value=98 Score=35.80 Aligned_cols=37 Identities=16% Similarity=0.264 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 822 ATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQK 858 (1091)
Q Consensus 822 E~eLee~~eklEel~~qLqelE~~LeELesQLesLqe 858 (1091)
...|+.+...+..+.+.-.++++.+.-|+.-....+.
T Consensus 37 ~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~~~~q~ 73 (411)
T 3ghg_C 37 DKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDES 73 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTC
T ss_pred hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccccC
Confidence 3444444444555555555555556655555444443
No 128
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=46.58 E-value=4e+02 Score=31.29 Aligned_cols=71 Identities=14% Similarity=0.129 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 001374 219 LIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKI 289 (1091)
Q Consensus 219 I~EL~eeiErlEgEi~LLkERIenlEKEne~LK~EL~~LqeELEiL~EElE~s~qsaeal~KQ~lEl~KKL 289 (1091)
+..|.+.+..+.+++..+...++.+......+..+.+.....+....++...++..+..+.+...+...+.
T Consensus 351 ~~~lrQRlddArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~kek~~~~n~~a~~~~KiAE~KrK~ 421 (602)
T 1cii_A 351 WDKLRQRLLDARNKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENIRNQLSGINQKIAEEKRKQ 421 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhh
Confidence 33444445555555555555555555555555555555555555555555555444444444444444443
No 129
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=46.36 E-value=2e+02 Score=27.26 Aligned_cols=30 Identities=17% Similarity=0.248 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 828 CTENLEMTKSQLYETEQLLAEVKAQLASAQ 857 (1091)
Q Consensus 828 ~~eklEel~~qLqelE~~LeELesQLesLq 857 (1091)
+..++...+..-.+++..+.+|..++..++
T Consensus 13 ~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~ 42 (107)
T 2no2_A 13 VTKQVSMARQAQVDLEREKKELEDSLERIS 42 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444443
No 130
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=46.20 E-value=69 Score=26.74 Aligned_cols=42 Identities=26% Similarity=0.351 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 188 EAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQA 229 (1091)
Q Consensus 188 EaKLaElEkeLeelkaEl~aLeeqLEelqeeI~EL~eeiErl 229 (1091)
+.++.++..++..+.+.|..|...+.....+|..+.++++++
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455667777788888888888888888888887777766653
No 131
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=45.59 E-value=74 Score=33.12 Aligned_cols=54 Identities=15% Similarity=0.183 Sum_probs=21.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 001374 238 GNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAK 291 (1091)
Q Consensus 238 ERIenlEKEne~LK~EL~~LqeELEiL~EElE~s~qsaeal~KQ~lEl~KKLaK 291 (1091)
+++++....+..|..|...+..+++.+..++..++++++.+..+.......+++
T Consensus 13 ~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~ 66 (190)
T 4emc_A 13 QQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQ 66 (190)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Confidence 444444444444444444444444444444444444444444444443333333
No 132
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=45.23 E-value=73 Score=31.86 Aligned_cols=30 Identities=17% Similarity=0.203 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001374 250 AKYELHIVSKELEIRNEEKNMSMRSAEAAN 279 (1091)
Q Consensus 250 LK~EL~~LqeELEiL~EElE~s~qsaeal~ 279 (1091)
|..++..+.++..+...-+..+.+.+++..
T Consensus 99 LeAE~aKLeEekQIseASRqgLrRDLeASR 128 (146)
T 2xnx_M 99 LTIEKAKLEEEKQISDASRQSLRRDLDASR 128 (146)
T ss_dssp HHHHHHHHGGGTTTC---------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 333444444433333333344444433333
No 133
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=44.54 E-value=97 Score=25.73 Aligned_cols=26 Identities=12% Similarity=0.256 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 878 ETHAQELEAEVNLLRAKIESLENELQ 903 (1091)
Q Consensus 878 esrL~eLeaElkeLqeKVesLE~ELe 903 (1091)
..++..+...+.++...++.+..+|.
T Consensus 25 ~~~~~~~k~~~~~~~~~l~~~~~~I~ 50 (60)
T 3htk_A 25 TDEFLKAKEKINEIFEKLNTIRDEVI 50 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 134
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=41.82 E-value=96 Score=30.49 Aligned_cols=37 Identities=8% Similarity=0.232 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Q 001374 889 NLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQR 925 (1091)
Q Consensus 889 keLqeKVesLE~ELe~ek~~~eEleaK~~eLEeQLe~ 925 (1091)
.-+..+++.|+..+..+...+..+..++..++..|..
T Consensus 101 ~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~ 137 (151)
T 2zdi_C 101 SFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQE 137 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444443
No 135
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=41.34 E-value=1.1e+02 Score=31.72 Aligned_cols=41 Identities=12% Similarity=0.072 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 818 KDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQK 858 (1091)
Q Consensus 818 keelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqe 858 (1091)
+.+....++.++.+...+..++.....++..|+.+++.++.
T Consensus 15 l~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~ 55 (190)
T 4emc_A 15 IDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNA 55 (190)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333344444444444444444444444444444444444
No 136
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=39.43 E-value=3.3e+02 Score=27.88 Aligned_cols=119 Identities=11% Similarity=0.144 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH----------------h
Q 001374 810 EFEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAE----------------S 873 (1091)
Q Consensus 810 elEqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selEeqLk~~~e----------------~ 873 (1091)
.++.+-..+......+......+..+-..+-.+.+.|.--..-++...+-+..+++|+...+. .
T Consensus 11 ~ve~v~~~L~e~h~qy~~ks~~yd~l~e~y~r~sqEiq~Kr~AieAF~E~ik~FeeQ~~~qer~~~~~~~~f~~e~~~~E 90 (170)
T 3l4q_C 11 SVEAVGAQLKVYHQQYQDKSREYDQLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQGQTQEKSSKEYLERFRREGNEKE 90 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTGGGSSSSSCCCSSS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcCHHH
Confidence 345555555555555555555555555555555555555555566666666667777654331 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhh
Q 001374 874 YRSLETHAQELEAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNEN 928 (1091)
Q Consensus 874 ledLesrL~eLeaElkeLqeKVesLE~ELe~ek~~~eEleaK~~eLEeQLe~~~~ 928 (1091)
+..+......+...+..+......|+.++........+++.++-.|+=.|.....
T Consensus 91 ~~~l~~N~e~LksRL~~l~~sk~~L~e~L~~q~~~~relERemnsLKPeL~qL~K 145 (170)
T 3l4q_C 91 MQRILLNSERLKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLMQLRK 145 (170)
T ss_dssp TTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 2334455555667777777777777777777777777777777777776665543
No 137
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=39.18 E-value=88 Score=26.82 Aligned_cols=33 Identities=30% Similarity=0.329 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001374 877 LETHAQELEAEVNLLRAKIESLENELQDEKMSH 909 (1091)
Q Consensus 877 LesrL~eLeaElkeLqeKVesLE~ELe~ek~~~ 909 (1091)
++.+...++.+...|..+|..|+.|+.+++..+
T Consensus 28 le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 28 LTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444555555555555555554443
No 138
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=38.97 E-value=1.2e+02 Score=28.07 Aligned_cols=44 Identities=9% Similarity=0.126 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 812 EELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQK 858 (1091)
Q Consensus 812 EqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqe 858 (1091)
..+++....+++.+.+....+. .++......|..|+.++..++.
T Consensus 15 ~~Lq~~~~~LE~~l~e~E~~~~---~e~~~~q~~i~~lE~eL~~~r~ 58 (95)
T 3mov_A 15 FQGQKESRACLERIQELEDLLA---KEKDNSRRMLTDKEREMAEIRD 58 (95)
T ss_dssp ---CCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555544443222 2333334444444444444443
No 139
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=38.83 E-value=65 Score=29.92 Aligned_cols=23 Identities=17% Similarity=0.169 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 001374 887 EVNLLRAKIESLENELQDEKMSH 909 (1091)
Q Consensus 887 ElkeLqeKVesLE~ELe~ek~~~ 909 (1091)
++..++..|..|+.++...+..+
T Consensus 38 e~~~~q~~i~~lE~eL~~~r~e~ 60 (95)
T 3mov_A 38 EKDNSRRMLTDKEREMAEIRDQM 60 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555444433
No 140
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=38.78 E-value=77 Score=25.51 Aligned_cols=33 Identities=27% Similarity=0.379 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001374 875 RSLETHAQELEAEVNLLRAKIESLENELQDEKM 907 (1091)
Q Consensus 875 edLesrL~eLeaElkeLqeKVesLE~ELe~ek~ 907 (1091)
.+|+.+...++....+|.++|+.|+.|-.-+++
T Consensus 6 ~eLE~r~k~le~~naeLEervstLq~EN~mLRq 38 (42)
T 2oqq_A 6 SELENRVKDLENKNSELEERLSTLQNENQMLRH 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 355666666777777777777777777666554
No 141
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=38.57 E-value=38 Score=28.34 Aligned_cols=30 Identities=30% Similarity=0.327 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 001374 895 IESLENELQDEKMSHHNAMAKCKELEEQLQ 924 (1091)
Q Consensus 895 VesLE~ELe~ek~~~eEleaK~~eLEeQLe 924 (1091)
++.|+.|+..++..+..+..++.+|..+|.
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555555555555555555555555554
No 142
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=37.70 E-value=1.4e+02 Score=32.73 Aligned_cols=12 Identities=25% Similarity=0.487 Sum_probs=5.8
Q ss_pred CCCccccccccc
Q 001374 788 PDDGSIVAAYES 799 (1091)
Q Consensus 788 ~~~~~~~~~~~~ 799 (1091)
...|.+..-++.
T Consensus 54 V~~Gq~L~~ld~ 65 (369)
T 4dk0_A 54 VKKGDLLAEIDS 65 (369)
T ss_dssp CCSSCCCEECCC
T ss_pred ECCCCEEEEEcC
Confidence 345555544444
No 143
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=37.33 E-value=2.5e+02 Score=25.97 Aligned_cols=62 Identities=13% Similarity=0.316 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 001374 187 FEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREIN 248 (1091)
Q Consensus 187 LEaKLaElEkeLeelkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIenlEKEne 248 (1091)
+.++++.++.-|+.-+.....+-.+.+++.+.+..+..+-+.-+..+.-++.|++..-+.+.
T Consensus 2 lan~La~le~sLe~EK~S~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~akidd~Lk~l~ 63 (101)
T 1d7m_A 2 MANRLAGLENSLESEKVSREQLIKQKDQLNSLLASLESEGAEREKRLRELEAKLDETLKNLE 63 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 34566666666666666666777777777777766666666666666666666665555444
No 144
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=36.64 E-value=1.2e+02 Score=24.46 Aligned_cols=39 Identities=21% Similarity=0.380 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 195 EQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEI 233 (1091)
Q Consensus 195 EkeLeelkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi 233 (1091)
.+++..++..+-.+++.-+.+...|..+..++.+++++.
T Consensus 9 rkkiarlkkdnlqlerdeqnlekiianlrdeiarlenev 47 (52)
T 3he5_B 9 RKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLENEV 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHH
Confidence 344455555555566655556566666666665555544
No 145
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=36.37 E-value=3.1e+02 Score=28.84 Aligned_cols=7 Identities=29% Similarity=0.093 Sum_probs=2.8
Q ss_pred HHHHhhh
Q 001374 87 KLSAANS 93 (1091)
Q Consensus 87 kls~a~~ 93 (1091)
.|..||.
T Consensus 69 ~l~~aL~ 75 (213)
T 1ik9_A 69 ELRKALL 75 (213)
T ss_dssp HHHHHHC
T ss_pred HHHHHHh
Confidence 3444443
No 146
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=35.65 E-value=3.1e+02 Score=26.54 Aligned_cols=20 Identities=35% Similarity=0.456 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001374 880 HAQELEAEVNLLRAKIESLE 899 (1091)
Q Consensus 880 rL~eLeaElkeLqeKVesLE 899 (1091)
-+++|..+++.++.+|+.++
T Consensus 83 ~~keLd~~ik~qekiIdnFE 102 (119)
T 3etw_A 83 ALKKLEAEMEQQKAVISDFE 102 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44445566666666666554
No 147
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=34.72 E-value=51 Score=24.47 Aligned_cols=27 Identities=33% Similarity=0.518 Sum_probs=16.4
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 001374 232 EIELLKGNIEQCEREINSAKYELHIVS 258 (1091)
Q Consensus 232 Ei~LLkERIenlEKEne~LK~EL~~Lq 258 (1091)
++..+++.|..+.+++..|+.+|..+.
T Consensus 3 eiaalkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666666665554
No 148
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=34.29 E-value=5.6e+02 Score=29.03 Aligned_cols=37 Identities=16% Similarity=0.199 Sum_probs=16.3
Q ss_pred HHHhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhh
Q 001374 142 DRAAHLDGALKECMRQIRNLKEEHEQKLQDFVLTKTKQ 179 (1091)
Q Consensus 142 ~rv~hLd~aLKec~~qLr~~reeqeqki~~~~~~~~~e 179 (1091)
+-+..+-..|++|-+|...---+- .++.+....-++|
T Consensus 119 ~~~e~~~~~l~e~~~~~~~~~~~~-~~~~~~~~~~~~e 155 (373)
T 3hhm_B 119 DNIEAVGKKLHEYNTQFQEKSREY-DRLYEEYTRTSQE 155 (373)
T ss_dssp C--CGGGC--CHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHhcccHH-HHHHHHhccchHH
Confidence 344556677888887765332222 2344443444443
No 149
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=34.19 E-value=73 Score=25.68 Aligned_cols=32 Identities=19% Similarity=0.228 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 001374 890 LLRAKIESLENELQDEKMSHHNAMAKCKELEE 921 (1091)
Q Consensus 890 eLqeKVesLE~ELe~ek~~~eEleaK~~eLEe 921 (1091)
.|..++..+..||.+.+..+.++..+.++|++
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677788888888888888877777777765
No 150
>2p01_A Alpha-2-macroglobulin receptor-associated protein; RAP, cell adhesion; NMR {Homo sapiens} PDB: 2p03_A
Probab=34.17 E-value=5.4e+02 Score=28.80 Aligned_cols=99 Identities=17% Similarity=0.136 Sum_probs=56.3
Q ss_pred hHHHH-------HHHHHHHHhHHHHhhhhhhHHHHHhhhh---------------------------HHHHHHHHHHHhh
Q 001374 116 WEKAE-------AEALALKNHLESVTLSKLTAEDRAAHLD---------------------------GALKECMRQIRNL 161 (1091)
Q Consensus 116 wekae-------~e~~~lK~~Le~~~~q~~~le~rv~hLd---------------------------~aLKec~~qLr~~ 161 (1091)
|+||+ .|..+|++.+...+.++..+..-+..+- .-||+.+|+|+.-
T Consensus 121 W~kA~~sGkFs~eEL~~Lk~Ef~HHqeKv~eY~~LLe~~~~~~~~heN~I~~~~~~~~~E~~~~~k~~~Lk~~~r~i~~~ 200 (323)
T 2p01_A 121 WHKAKTSGKFSGEELDKLWREFLHHKEKVHEYNVLLETLSRTEEIHENVISPSDLSDIKGSVLHSRHTELKEKLRSINQG 200 (323)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTSCCCCSCSSSCCSSSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCChhhhcchhhhhHHhhhHHHHHHHHHHHhh
Confidence 99996 6888999888887777666554433331 4568888888877
Q ss_pred hHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 001374 162 KEEHEQKLQDFVLTKTK-QWDKIRLEFEAKIAN----FEQELLRSAAENATLSRSLQERS 216 (1091)
Q Consensus 162 reeqeqki~~~~~~~~~-e~e~~~~ELEaKLaE----lEkeLeelkaEl~aLeeqLEelq 216 (1091)
=+.=++.++.. .. ++ +|..=|..==-+++. ...+|+.++.++...+..|..++
T Consensus 201 ydrL~rl~~~g-~~-~~~eF~EPkVq~LW~lA~~~NFT~~ELeSlK~EL~HfE~rL~Klr 258 (323)
T 2p01_A 201 LDRLRRVSHQG-YS-TEAEFEEPRVIDLWDLAQSANLTDKELEAFREELKHFEAKIEKHN 258 (323)
T ss_dssp HHHHHHHHHTS-SC-CSCSSCCTTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CC-cccCccChHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 77555444433 11 22 222111111111111 15566667777776666665553
No 151
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=34.09 E-value=2.6e+02 Score=25.07 Aligned_cols=15 Identities=20% Similarity=0.082 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q 001374 889 NLLRAKIESLENELQ 903 (1091)
Q Consensus 889 keLqeKVesLE~ELe 903 (1091)
..|-+..-+|+.||.
T Consensus 57 q~LlnvK~~Ld~EIa 71 (84)
T 1gk4_A 57 QDLLNVKMALDIEIA 71 (84)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHH
Confidence 333333334444443
No 152
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=33.80 E-value=2.6e+02 Score=25.02 Aligned_cols=21 Identities=5% Similarity=0.148 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhH
Q 001374 890 LLRAKIESLENELQDEKMSHH 910 (1091)
Q Consensus 890 eLqeKVesLE~ELe~ek~~~e 910 (1091)
.++.++..|...+..+...+.
T Consensus 82 ~i~~~l~~l~~rw~~L~~~~~ 102 (118)
T 3uul_A 82 EIQEQMTLLNARWEALRVESM 102 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433
No 153
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=33.57 E-value=3e+02 Score=25.66 Aligned_cols=74 Identities=18% Similarity=0.131 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 001374 838 QLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAE--SYRSLETHAQELEAEVNLLRAKIESLENELQDEKMSHHNAMAK 915 (1091)
Q Consensus 838 qLqelE~~LeELesQLesLqeS~selEeqLk~~~e--~ledLesrL~eLeaElkeLqeKVesLE~ELe~ek~~~eEleaK 915 (1091)
+.+.+..+|.+|+.+|+........++.-+..... .+.+.. .++.++.+...+|+.|+.++.+....+.+++.+
T Consensus 16 RkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~----s~~~~L~e~~~kid~L~~el~K~q~~L~e~e~~ 91 (98)
T 2ke4_A 16 QRKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPA----SLEPQIAETLSNIERLKLEVQKYEAWLAEAESR 91 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGG----GSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34444555555555555555533333322222111 111111 125778888888888888888888887777543
No 154
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=33.56 E-value=87 Score=35.85 Aligned_cols=51 Identities=16% Similarity=0.197 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhh
Q 001374 878 ETHAQELEAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNEN 928 (1091)
Q Consensus 878 esrL~eLeaElkeLqeKVesLE~ELe~ek~~~eEleaK~~eLEeQLe~~~~ 928 (1091)
+.++..++.+...+...+..++.++..++..+..-+..-+.|..+|..+.+
T Consensus 9 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkg 59 (403)
T 4etp_A 9 KEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRG 59 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 333334444444444444444444444444455455555555666666554
No 155
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=32.37 E-value=92 Score=35.66 Aligned_cols=10 Identities=20% Similarity=0.232 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 001374 911 NAMAKCKELE 920 (1091)
Q Consensus 911 EleaK~~eLE 920 (1091)
.+..++.+|+
T Consensus 49 ~l~n~~~elk 58 (403)
T 4etp_A 49 TLHNELQELR 58 (403)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHcC
Confidence 3334444444
No 156
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=32.20 E-value=2.6e+02 Score=26.65 Aligned_cols=30 Identities=17% Similarity=0.304 Sum_probs=20.0
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 805 KFSLEEFEELKLEKDNLATDLARCTENLEM 834 (1091)
Q Consensus 805 ~~s~EelEqLEsEkeelE~eLee~~eklEe 834 (1091)
++..+++++++.++...+..|..++.+++.
T Consensus 31 ~~tM~~ieeLQ~Ei~~~E~QL~iArQKLkd 60 (107)
T 2k48_A 31 PFTMSTLQELQENITAHEQQLVTARQKLKD 60 (107)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778888877777776666666644443
No 157
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=31.83 E-value=3.7e+02 Score=26.13 Aligned_cols=33 Identities=30% Similarity=0.460 Sum_probs=15.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 864 ETQLKCMAESYRSLETHAQELEAEVNLLRAKIESLE 899 (1091)
Q Consensus 864 EeqLk~~~e~ledLesrL~eLeaElkeLqeKVesLE 899 (1091)
..+++.+..+|++ -++.|+.+++.++..|+.++
T Consensus 70 K~eY~~L~KkYk~---~~~~Ld~eI~~qe~iI~nFe 102 (119)
T 2avr_X 70 KSQYQELASKYED---ALKKLEAEMEQQKAVISDFE 102 (119)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 3444444444433 33344555555555555544
No 158
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=31.29 E-value=58 Score=32.67 Aligned_cols=95 Identities=18% Similarity=0.196 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccC
Q 001374 228 QAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLVRKKL 307 (1091)
Q Consensus 228 rlEgEi~LLkERIenlEKEne~LK~EL~~LqeELEiL~EElE~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l~rk~l 307 (1091)
++.+++..+..-+.....--..|..++...-++-+....-.+.....++.+.+.+..+.+||...+.++.. --
T Consensus 24 qL~nrla~~~am~~sqqq~~eqlS~eFqtal~eAq~Atd~ye~ai~n~~sA~~~~d~lekKl~~aq~kL~~-------L~ 96 (158)
T 3tul_A 24 QLESRLAVWQAMIESQKEMGIQVSKEFQTALGEAQEATDLYEASIKKTDTAKSVYDAATKKLTQAQNKLQS-------LD 96 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC--CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-------C-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhc-------CC
Confidence 34444444444444444444444444444444433334433434445556666666666666555554443 35
Q ss_pred CChHHHHHHHHHHhhhcCCcCC
Q 001374 308 PGPAALAQMKMEVESLGRDYGD 329 (1091)
Q Consensus 308 pgpaa~a~mk~ev~~l~~~~~~ 329 (1091)
||-.--++.+-+++.++.+...
T Consensus 97 P~~P~Yak~~a~~~q~~~d~~~ 118 (158)
T 3tul_A 97 PADPGYAQAEAAVEQAGKEATE 118 (158)
T ss_dssp ------CHHHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHHH
Confidence 7766677888888888766543
No 159
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=31.27 E-value=6.6e+02 Score=28.96 Aligned_cols=145 Identities=11% Similarity=0.100 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 149 GALKECMRQIRNLKEEHEQKLQDFVLTKTKQWDKI------------RLEFEAKIANFEQELLRSAAENATLSRSLQERS 216 (1091)
Q Consensus 149 ~aLKec~~qLr~~reeqeqki~~~~~~~~~e~e~~------------~~ELEaKLaElEkeLeelkaEl~aLeeqLEelq 216 (1091)
..|...+.++-..+..--+.|..-|...-+.|-+- +..++.....+++.+.....++......+...-
T Consensus 84 ~~~~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~e~~~K~~~~~~kerK~~~~~~~k~qk~l~~~~~~l~KaKk~Y~~~c 163 (486)
T 3haj_A 84 MAFMSEAERVSELHLEVKASLMNDDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHAAC 163 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCBCSSSSBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 217 NMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAEC 296 (1091)
Q Consensus 217 eeI~EL~eeiErlEgEi~LLkERIenlEKEne~LK~EL~~LqeELEiL~EElE~s~qsaeal~KQ~lEl~KKLaKLEaEc 296 (1091)
.++..........+++..+....++-+.......+..+.....+ ...-+.........-...+-.+-..+..++.+.
T Consensus 164 ke~e~a~~~~~~a~~d~~~t~k~~eK~~~k~~k~~~~~~~a~~~---Y~~~v~~~n~~~~~y~~~~~~~~~~lQ~lEeeR 240 (486)
T 3haj_A 164 KEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEK---YEKSLKELDQGTPQYMENMEQVFEQCQQFEEKR 240 (486)
T ss_dssp HHHHHHHHHHHHHHHCCCSCSHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 160
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=31.02 E-value=6.3e+02 Score=28.61 Aligned_cols=51 Identities=10% Similarity=0.190 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhh
Q 001374 877 LETHAQELEAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNE 927 (1091)
Q Consensus 877 LesrL~eLeaElkeLqeKVesLE~ELe~ek~~~eEleaK~~eLEeQLe~~~ 927 (1091)
+......++.++.++......|+.+|........+++.++..|+=.|....
T Consensus 203 ~~~n~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l~ql~ 253 (373)
T 3hhm_B 203 IMHNYDKLKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMNSIKPDLIQLR 253 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHH
Confidence 344444556666666666777777777777777777776666666665443
No 161
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=30.96 E-value=2e+02 Score=25.97 Aligned_cols=20 Identities=20% Similarity=0.268 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001374 811 FEELKLEKDNLATDLARCTE 830 (1091)
Q Consensus 811 lEqLEsEkeelE~eLee~~e 830 (1091)
++.|...+..++.++..+..
T Consensus 24 le~le~~Ie~LE~~i~~le~ 43 (89)
T 2lw1_A 24 LEQLPQLLEDLEAKLEALQT 43 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444443
No 162
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=30.60 E-value=3.3e+02 Score=25.21 Aligned_cols=70 Identities=13% Similarity=0.056 Sum_probs=45.5
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHH
Q 001374 806 FSLEEFEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRS 876 (1091)
Q Consensus 806 ~s~EelEqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selEeqLk~~~e~led 876 (1091)
++.+++..++..-..+.|+.-...=... -..+...++.....|..+++.+...+..+..++..+...|+.
T Consensus 18 ls~eev~~lKq~RRtlKNRgyAq~CR~K-r~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~ 87 (90)
T 2wt7_B 18 FTKDEVIRLKQKRRTLKNRGYAQSCRYK-RVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEK 87 (90)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888888887753332222 224556667777777777777777666666666666555543
No 163
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=29.32 E-value=1.5e+02 Score=29.01 Aligned_cols=25 Identities=24% Similarity=0.245 Sum_probs=17.7
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHhhh
Q 001374 903 QDEKMSHHNAMAKCKELEEQLQRNE 927 (1091)
Q Consensus 903 e~ek~~~eEleaK~~eLEeQLe~~~ 927 (1091)
..++....++..++.+|+.++....
T Consensus 64 eeL~~ki~eL~~kvA~le~e~~~~e 88 (125)
T 2pms_C 64 EELSDKIDELDAEIAKLEDQLKAAE 88 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777778888888887655
No 164
>1pl5_A Regulatory protein SIR4; parallel coiled coil homodimer, DNA binding protein/transcription complex; 2.50A {Saccharomyces cerevisiae} SCOP: h.1.23.1
Probab=29.24 E-value=3.5e+02 Score=25.75 Aligned_cols=34 Identities=24% Similarity=0.345 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Q 001374 892 RAKIESLENELQDEKMSHHNAMAKCKELEEQLQR 925 (1091)
Q Consensus 892 qeKVesLE~ELe~ek~~~eEleaK~~eLEeQLe~ 925 (1091)
.-+|.+|...+.+.+.+++....+|.+-..+|..
T Consensus 94 eiritslqgdltftkkclenarsqisekdakink 127 (142)
T 1pl5_A 94 EIRITSLQGDLTFTKKCLENARSQISEKDAKINK 127 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred heeeeeeccchhhHHHHHHHHHhhhhhhhHHHHH
Confidence 3345566677777777777666666665555553
No 165
>1nyh_A Regulatory protein SIR4; coiled-coil, transcription regulation, repressor, transcript repressor; 3.10A {Saccharomyces cerevisiae} SCOP: h.1.23.1
Probab=28.59 E-value=3.8e+02 Score=26.04 Aligned_cols=33 Identities=24% Similarity=0.351 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Q 001374 893 AKIESLENELQDEKMSHHNAMAKCKELEEQLQR 925 (1091)
Q Consensus 893 eKVesLE~ELe~ek~~~eEleaK~~eLEeQLe~ 925 (1091)
-+|.+|...+.+.+.+++....+|.+-..+|..
T Consensus 119 iritslqgdltftkkclenarsqisekdakink 151 (166)
T 1nyh_A 119 IRITSLQGDLTFTKKCLENARSQISEKDAKINK 151 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeeeeccchhhHHHHHHHHHhhhhhhhHHHHH
Confidence 345566667777777777666666665555543
No 166
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=28.23 E-value=99 Score=24.61 Aligned_cols=26 Identities=35% Similarity=0.402 Sum_probs=15.5
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 806 FSLEEFEELKLEKDNLATDLARCTEN 831 (1091)
Q Consensus 806 ~s~EelEqLEsEkeelE~eLee~~ek 831 (1091)
|++|++..+++++..++..+..+..+
T Consensus 17 fspeelaaleselqalekklaalksk 42 (48)
T 1g6u_A 17 FSPEELAALESELQALEKKLAALKSK 42 (48)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777776666666555555444433
No 167
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=28.16 E-value=1.4e+02 Score=31.81 Aligned_cols=57 Identities=23% Similarity=0.309 Sum_probs=44.4
Q ss_pred hhhhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 800 ETTACKFSLEEFEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASA 856 (1091)
Q Consensus 800 ~~~~~~~s~EelEqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesL 856 (1091)
.+..+.+....+..+++++..++..|+..+.+......++.+..+.++++..+....
T Consensus 162 de~Ik~yLa~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~~ 218 (228)
T 3q0x_A 162 DSVVKQFLAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDKH 218 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 345566777778888888888888888888888888888888888887777776655
No 168
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=28.15 E-value=1.7e+02 Score=27.33 Aligned_cols=65 Identities=15% Similarity=0.232 Sum_probs=37.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001374 239 NIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRS-----AEAANKQHMEGVKKIAKLEAECQRLRGLV 303 (1091)
Q Consensus 239 RIenlEKEne~LK~EL~~LqeELEiL~EElE~s~qs-----aeal~KQ~lEl~KKLaKLEaEcqrLr~l~ 303 (1091)
|...+.+.+..|..+|.......+-+........+. ...+..++.+...+|..|..++.++..++
T Consensus 16 RkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el~K~q~~L 85 (98)
T 2ke4_A 16 QRKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEVQKYEAWL 85 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444454444444444444444443221 13356778888888888888887777665
No 169
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=28.05 E-value=5e+02 Score=26.54 Aligned_cols=21 Identities=5% Similarity=0.001 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001374 246 EINSAKYELHIVSKELEIRNE 266 (1091)
Q Consensus 246 Ene~LK~EL~~LqeELEiL~E 266 (1091)
+...|+..|..+......+.+
T Consensus 97 N~e~LksRL~~l~~sk~~L~e 117 (170)
T 3l4q_C 97 NSERLKSRIAEIHESRTKLEQ 117 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444333333333
No 170
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=27.80 E-value=3.6e+02 Score=24.73 Aligned_cols=57 Identities=12% Similarity=0.068 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 212 LQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEK 268 (1091)
Q Consensus 212 LEelqeeI~EL~eeiErlEgEi~LLkERIenlEKEne~LK~EL~~LqeELEiL~EEl 268 (1091)
.+.....-.......++.......+..+...++.+|..|+.+|..+..++..+..-+
T Consensus 17 ~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll 73 (87)
T 1hjb_A 17 KIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLF 73 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 171
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=27.13 E-value=3.3e+02 Score=24.19 Aligned_cols=21 Identities=5% Similarity=0.135 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhH
Q 001374 890 LLRAKIESLENELQDEKMSHH 910 (1091)
Q Consensus 890 eLqeKVesLE~ELe~ek~~~e 910 (1091)
.++.++..|...+..+...+.
T Consensus 82 ~i~~~l~~l~~rw~~L~~~~~ 102 (119)
T 3uun_A 82 EVQEQMNLLNSRWECLRVASM 102 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433
No 172
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=27.08 E-value=1.9e+02 Score=28.30 Aligned_cols=20 Identities=25% Similarity=0.302 Sum_probs=9.5
Q ss_pred hhhhhhHHHHHhhhhHHHHH
Q 001374 134 TLSKLTAEDRAAHLDGALKE 153 (1091)
Q Consensus 134 ~~q~~~le~rv~hLd~aLKe 153 (1091)
..++..++-+|..|+-.|+.
T Consensus 12 ~~KvAElekkv~~lek~lk~ 31 (125)
T 2pms_C 12 QAKIAELENQVHRLEQELKE 31 (125)
T ss_dssp HHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33444455555555544443
No 173
>2qih_A Protein USPA1; trimeric, parallel alpha-helical coiled-coil, cell adhesion; 1.90A {Moraxella catarrhalis}
Probab=26.32 E-value=4.9e+02 Score=25.86 Aligned_cols=69 Identities=9% Similarity=0.038 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 196 QELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIR 264 (1091)
Q Consensus 196 keLeelkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIenlEKEne~LK~EL~~LqeELEiL 264 (1091)
..+..+...+..|...+...-..|..|...+......|.-.+..|.+....+-.|..+...-...+..|
T Consensus 54 adI~~L~~dI~dLd~~v~l~~RdIgsL~ddVa~NqaDIakNqADIdNNinnIYELAQQQDQHSSDIKTL 122 (157)
T 2qih_A 54 ADIQLHDKKITNLGILHSMVARAVGNNTQGVATNKADIAKNQADIANNIKNIYELAQQQDQHSSDIKTL 122 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhcchhhHHHhhHHHHHHhHHHHHhhHHHHHHHHHHHHHhHHHHHHH
Confidence 333333444444444444444455555555555566666566666665555555544444333333333
No 174
>3htk_B Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=26.19 E-value=3.2e+02 Score=23.70 Aligned_cols=61 Identities=5% Similarity=-0.052 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001374 848 EVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVNLLRAKIESLENELQDEKMS 908 (1091)
Q Consensus 848 ELesQLesLqeS~selEeqLk~~~e~ledLesrL~eLeaElkeLqeKVesLE~ELe~ek~~ 908 (1091)
.++.++...-.....+-.++......+.+....+...+..+-+.++++.+++.-+......
T Consensus 8 ~~e~kI~~~~~~~~~~l~~~~~~~~~l~~~~~el~~~~i~~lE~~N~~~s~~~li~~~~~r 68 (73)
T 3htk_B 8 DIDDQIQQLLLKQRHLLSKMASSMKSLKNCQKELISTQILQFEAQNMDVSMNDVIGFFNER 68 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHhHHHHHHHHHHHH
Confidence 3333333333433344444544445555555566666666666666666666666554443
No 175
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=26.10 E-value=2.3e+02 Score=23.61 Aligned_cols=36 Identities=14% Similarity=0.150 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 821 LATDLARCTENLEMTKSQLYETEQLLAEVKAQLASA 856 (1091)
Q Consensus 821 lE~eLee~~eklEel~~qLqelE~~LeELesQLesL 856 (1091)
+...+..+..+-+.+...|+++..+|..|+.+++.+
T Consensus 14 l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 14 LEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333344444444444555555555555555555443
No 176
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=26.02 E-value=2.9e+02 Score=23.14 Aligned_cols=34 Identities=12% Similarity=0.113 Sum_probs=17.8
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 232 EIELLKGNIEQCEREINSAKYELHIVSKELEIRN 265 (1091)
Q Consensus 232 Ei~LLkERIenlEKEne~LK~EL~~LqeELEiL~ 265 (1091)
.+.-++.+...++.++..|..++..+..++..+.
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555544443
No 177
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=25.98 E-value=5.9e+02 Score=26.68 Aligned_cols=66 Identities=15% Similarity=0.104 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 825 LARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVNLLRAKIE 896 (1091)
Q Consensus 825 Lee~~eklEel~~qLqelE~~LeELesQLesLqeS~selEeqLk~~~e~ledLesrL~eLeaElkeLqeKVe 896 (1091)
...++.++..+..+...++..+..+..+++.+-..+.+.|.++-. -.-.-|++.++.+.+|++++.
T Consensus 134 ~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~L~~------KF~~lLNeKK~KIR~lq~~Ll 199 (213)
T 1ik9_A 134 IAENQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEALETDLYK------RFILVLNEKKTKIRSLHNKLL 199 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHhhHHHHHHHHHHHH
Confidence 334455555555566666666666677777776666666666531 122345566666666665553
No 178
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=25.90 E-value=5e+02 Score=25.84 Aligned_cols=38 Identities=24% Similarity=0.245 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHhhhhhccCCChHHHH----HHHHHHhhh
Q 001374 286 VKKIAKLEAECQRLRGLVRKKLPGPAALA----QMKMEVESL 323 (1091)
Q Consensus 286 ~KKLaKLEaEcqrLr~l~rk~lpgpaa~a----~mk~ev~~l 323 (1091)
-..+..+++.+..+..|.||-=|.|..|- +++.+++.+
T Consensus 121 P~rL~~ie~RL~~l~~L~RKyg~~~eell~~~~~~~~eL~~l 162 (175)
T 4abx_A 121 PEALDRVEARLSALSKLKNKYGPTLEDVVEFGAQAAEELAGL 162 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 45688899999999999999988888774 455555544
No 179
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=25.51 E-value=1.1e+02 Score=25.50 Aligned_cols=31 Identities=26% Similarity=0.309 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 809 EEFEELKLEKDNLATDLARCTENLEMTKSQL 839 (1091)
Q Consensus 809 EelEqLEsEkeelE~eLee~~eklEel~~qL 839 (1091)
.+++.|+.+..++..+++.+..++++++.++
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778888888877777777776666666655
No 180
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=25.02 E-value=1.7e+02 Score=32.67 Aligned_cols=24 Identities=8% Similarity=-0.076 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 813 ELKLEKDNLATDLARCTENLEMTK 836 (1091)
Q Consensus 813 qLEsEkeelE~eLee~~eklEel~ 836 (1091)
+|..++..++..+.....++..++
T Consensus 9 ~~~~~~~~~e~~i~~~~~~i~~L~ 32 (323)
T 1lwu_C 9 KILEEVRILEQIGVSHDAQIQELS 32 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcHHHHHHHHH
Confidence 444444444443333333333333
No 181
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=24.74 E-value=5.8e+02 Score=26.12 Aligned_cols=102 Identities=17% Similarity=0.153 Sum_probs=53.3
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 001374 172 FVLTKTKQWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAK 251 (1091)
Q Consensus 172 ~~~~~~~e~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIenlEKEne~LK 251 (1091)
+|..+.+.+|.-+..|....++...-.....+.++.|...++.= .-...+-....=|.++.+++...++..+...
T Consensus 24 ~~~~k~~~le~ek~~l~~~e~~r~k~~~h~~~k~~qlre~~d~g-----tt~~~i~~m~~yI~llrErea~lEqkVaeq~ 98 (169)
T 3k29_A 24 VVKEKRRLLELEQEKLRERESERDKVKNHYMQKIRQLREQLDDG-----TTSDAILKMKAYIKVVAIQLSEEEEKVNKQK 98 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555544444444444444444444433321 0112233444456677777777777776666
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001374 252 YELHIVSKELEIRNEEKNMSMRSAEAA 278 (1091)
Q Consensus 252 ~EL~~LqeELEiL~EElE~s~qsaeal 278 (1091)
..+..-.+.++....+.....+..+..
T Consensus 99 e~Ve~e~q~Le~ar~el~qArke~eKf 125 (169)
T 3k29_A 99 ENVLAASKELERAEVELTKRRKEEEKT 125 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666655555555555444443
No 182
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=24.71 E-value=3.7e+02 Score=25.53 Aligned_cols=32 Identities=25% Similarity=0.239 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 001374 836 KSQLYETEQLLAEVKAQLASAQKSNSLAETQL 867 (1091)
Q Consensus 836 ~~qLqelE~~LeELesQLesLqeS~selEeqL 867 (1091)
...+++++..+...+.||-.+...+..++.++
T Consensus 34 M~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~ 65 (107)
T 2k48_A 34 MSTLQELQENITAHEQQLVTARQKLKDAEKAV 65 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444555555555555555555444444444
No 183
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=23.88 E-value=6.6e+02 Score=26.51 Aligned_cols=108 Identities=10% Similarity=0.058 Sum_probs=68.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhh---hh----------
Q 001374 864 ETQLKCMAESYRSLETHAQELEAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNEN---CA---------- 930 (1091)
Q Consensus 864 EeqLk~~~e~ledLesrL~eLeaElkeLqeKVesLE~ELe~ek~~~eEleaK~~eLEeQLe~~~~---~~---------- 930 (1091)
+..+...+.++...+..+..++.++....++|..|+-.+..+.......+.+|..|+.-.-.... +.
T Consensus 90 ~a~l~dHE~RIt~~~~~ia~~e~Rit~~e~~i~~l~~~v~~ld~~vt~~et~Isal~~DyVS~s~t~~QsLaSpl~V~~S 169 (242)
T 3c9i_A 90 RIDVDDHESRITANTKAITALNVRVTTAEGEIASLQTNVSALDGRVTTAENNISALQADYVSKTATTSQSLASPLNVTTS 169 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHBCBSSCCSCEECSSCEEESSC
T ss_pred hcccccHHHHhhhhhhhhhhhhheeecccccchhhhhhhhhhcccccccccchhhhhhhhhhhhhhhhhhccCcccccee
Confidence 33555555556556666666777777777777777777777777777777777777665543221 00
Q ss_pred -----------------------cccchhHhh-----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001374 931 -----------------------VCSSEADEN-----KIKQDRDLAAAAERLAECQETILLLGKQLKSL 971 (1091)
Q Consensus 931 -----------------------lk~q~dkdL-----KikqEkEIaaAeeKLAEcQeTI~sLEKQLKsL 971 (1091)
++..-+.++ .....-||.+++..|-..|..|+-||.-|+..
T Consensus 170 YsV~G~kVvGaR~tG~TAaTGta~kg~F~a~~~~~v~~tY~qseiqa~an~L~~~RqrikAlEdalR~H 238 (242)
T 3c9i_A 170 YSVGGKKVVGARQTGWTAATGTANKGVFDADLTFAVSDTYTQSEIQAIANALITERRRTKAMEDALRAH 238 (242)
T ss_dssp EEETTEEEECSCBCCCCCCBSCCCCSCCBTTCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeCCEEEecccccCcccccccccccccccCcceeccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 000000111 22245689999999999999999999988753
No 184
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=23.70 E-value=1.1e+02 Score=33.11 Aligned_cols=11 Identities=0% Similarity=0.271 Sum_probs=4.8
Q ss_pred CCccccccccc
Q 001374 789 DDGSIVAAYES 799 (1091)
Q Consensus 789 ~~~~~~~~~~~ 799 (1091)
..|.+..-++.
T Consensus 54 ~kG~~L~~ld~ 64 (341)
T 3fpp_A 54 KKDQLLGVIDP 64 (341)
T ss_dssp CTTCEEEEECC
T ss_pred CCCCEEEEECh
Confidence 34455443443
No 185
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=23.58 E-value=3.7e+02 Score=25.61 Aligned_cols=46 Identities=11% Similarity=0.096 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 001374 879 THAQELEAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQ 924 (1091)
Q Consensus 879 srL~eLeaElkeLqeKVesLE~ELe~ek~~~eEleaK~~eLEeQLe 924 (1091)
.++..+..++..+...+..|++|..+-=..++.++.=|.+..+.+.
T Consensus 18 ~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIEiLcQe~~~~~~ 63 (106)
T 4e61_A 18 ETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIEILVHTTQDLIN 63 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3444566777777788888888888888888888888888766543
No 186
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=22.73 E-value=1.4e+02 Score=32.19 Aligned_cols=13 Identities=23% Similarity=0.181 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHh
Q 001374 913 MAKCKELEEQLQR 925 (1091)
Q Consensus 913 eaK~~eLEeQLe~ 925 (1091)
++++..++.++..
T Consensus 134 ~a~l~~a~a~l~~ 146 (341)
T 3fpp_A 134 DAQIKRNQASLDT 146 (341)
T ss_dssp HHHHHHTHHHHTT
T ss_pred HHHHHHHHHHHHH
Confidence 3333444444443
No 187
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=22.48 E-value=4.8e+02 Score=26.76 Aligned_cols=48 Identities=13% Similarity=0.052 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHhhhcCC
Q 001374 276 EAANKQHMEGVKKIAKLEAECQRLRGLVRKKLPGPAALAQMKMEVESLGRD 326 (1091)
Q Consensus 276 eal~KQ~lEl~KKLaKLEaEcqrLr~l~rk~lpgpaa~a~mk~ev~~l~~~ 326 (1091)
..+.+|+.++..+...++.-+-.|...+++..-+..+..|. |-.|+|.
T Consensus 111 ~~l~~Qll~l~Aed~AieDaIy~L~~al~~g~I~ld~ylK~---vR~LaRe 158 (174)
T 2p22_A 111 TDGLNQLYNLVAQDYALTDTIECLSRMLHRGTIPLDTFVKQ---GRELARQ 158 (174)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHH---HHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH---HHHHHHH
Confidence 34678999999999999999988888777765555544333 6666654
No 188
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=22.20 E-value=2.4e+02 Score=26.58 Aligned_cols=45 Identities=24% Similarity=0.284 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhh
Q 001374 884 LEAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNEN 928 (1091)
Q Consensus 884 LeaElkeLqeKVesLE~ELe~ek~~~eEleaK~~eLEeQLe~~~~ 928 (1091)
|-.+.-.|..+++.++.|-..++......-+++.+|+.++++...
T Consensus 35 LIqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ 79 (104)
T 3s9g_A 35 LIKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRA 79 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHH
Confidence 345555566666666666666666666667777777777776553
No 189
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=22.05 E-value=4.7e+02 Score=30.82 Aligned_cols=15 Identities=20% Similarity=0.326 Sum_probs=7.4
Q ss_pred HHHHHHhhhhhccCC
Q 001374 294 AECQRLRGLVRKKLP 308 (1091)
Q Consensus 294 aEcqrLr~l~rk~lp 308 (1091)
..+..+=.++-...|
T Consensus 148 ~~l~~iPN~~~~~vP 162 (501)
T 1wle_A 148 LRALRLPNQTHPDVP 162 (501)
T ss_dssp HHHTTSCCCCCTTCC
T ss_pred HHHHhCCCCCCCCCC
Confidence 344455555555544
No 190
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=21.58 E-value=1.4e+02 Score=29.40 Aligned_cols=39 Identities=23% Similarity=0.296 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 001374 886 AEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQ 924 (1091)
Q Consensus 886 aElkeLqeKVesLE~ELe~ek~~~eEleaK~~eLEeQLe 924 (1091)
..+..|.-.+.+++.+|.-++....+-..++..|+.-..
T Consensus 55 ~~~d~L~lQ~esmeaalkmEr~~~~eEKrkLAqLQ~AY~ 93 (130)
T 3cl3_D 55 VQVDQLRMQGQSVEAALRMERQAASEEKRKLAQLQVAYH 93 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555556666666666555555555555555554444
No 191
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=21.43 E-value=69 Score=34.73 Aligned_cols=41 Identities=22% Similarity=0.247 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhh
Q 001374 888 VNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNEN 928 (1091)
Q Consensus 888 lkeLqeKVesLE~ELe~ek~~~eEleaK~~eLEeQLe~~~~ 928 (1091)
+++++..+..|....+++...+.++..++..|+++|+++..
T Consensus 56 l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34444445555555566666666677777788888888776
No 192
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=21.33 E-value=1.1e+03 Score=28.20 Aligned_cols=18 Identities=22% Similarity=0.453 Sum_probs=13.2
Q ss_pred hHHHHhhHHHHHHHhhhh
Q 001374 99 EDLVKQHTKVAEEAVSGW 116 (1091)
Q Consensus 99 d~lvkqh~kvaeeav~gw 116 (1091)
+.|...|.....+|+.-.
T Consensus 351 ~eL~~~H~~~~~~Al~~F 368 (592)
T 1f5n_A 351 QELLDLHRDSEREAIEVF 368 (592)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 567788888888887533
No 193
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=21.20 E-value=6.2e+02 Score=25.22 Aligned_cols=33 Identities=21% Similarity=0.101 Sum_probs=21.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 807 SLEEFEELKLEKDNLATDLARCTENLEMTKSQL 839 (1091)
Q Consensus 807 s~EelEqLEsEkeelE~eLee~~eklEel~~qL 839 (1091)
..++.+++..++++.-..|++++..++.=....
T Consensus 66 Dk~~~e~l~~~veeA~~~L~eYn~rL~~E~~dR 98 (152)
T 4fla_A 66 DKEAAERLSKTVDEACLLLAEYNGRLAAELEDR 98 (152)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888888888877775555433333
No 194
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=21.13 E-value=1.1e+03 Score=28.02 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=11.5
Q ss_pred CCCCcCcchhhHhhhhhhhhhh
Q 001374 452 DDKVSCADSWATALISELSQIK 473 (1091)
Q Consensus 452 dd~~s~s~swasalisel~~fk 473 (1091)
++...|-=-|-| .--|||-|+
T Consensus 500 ~~k~~~iyEWDs-~hg~~E~y~ 520 (551)
T 2b5u_A 500 GDKGRKIYEWDS-QHGELEGYR 520 (551)
T ss_dssp ETTTTEEEEEET-TTTEEEEEE
T ss_pred cCCCCeeeeccc-cCCceEeec
Confidence 444555555654 345666666
No 195
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=20.89 E-value=3.3e+02 Score=32.13 Aligned_cols=29 Identities=21% Similarity=0.158 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 830 ENLEMTKSQLYETEQLLAEVKAQLASAQK 858 (1091)
Q Consensus 830 eklEel~~qLqelE~~LeELesQLesLqe 858 (1091)
+++-.+-.+.+++...+.+|+.+.-.+.+
T Consensus 33 ~~~~~ld~~~r~~~~~~~~l~~~rn~~sk 61 (485)
T 3qne_A 33 DEIIAEYKEWVKLRFDLDEHNKKLNSVQK 61 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444333
No 196
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=20.73 E-value=4.9e+02 Score=24.77 Aligned_cols=53 Identities=15% Similarity=0.089 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001374 250 AKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGL 302 (1091)
Q Consensus 250 LK~EL~~LqeELEiL~EElE~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l 302 (1091)
++.++...+.++..++.++..+.-.++.+.++-.-.-.||...|--|+....+
T Consensus 9 l~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIEiLcQe~~~~ 61 (106)
T 4e61_A 9 IQAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIEILVHTTQDL 61 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333444444444444444444444555555555566777788888776544
No 197
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=20.72 E-value=4.6e+02 Score=23.50 Aligned_cols=31 Identities=13% Similarity=0.108 Sum_probs=18.6
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 235 LLKGNIEQCEREINSAKYELHIVSKELEIRN 265 (1091)
Q Consensus 235 LLkERIenlEKEne~LK~EL~~LqeELEiL~ 265 (1091)
.+..+...++.+|..|+.+|..+..++..+.
T Consensus 40 e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 40 ETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666666666666655443
No 198
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=20.72 E-value=6e+02 Score=29.42 Aligned_cols=23 Identities=9% Similarity=0.115 Sum_probs=9.7
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHh
Q 001374 903 QDEKMSHHNAMAKCKELEEQLQR 925 (1091)
Q Consensus 903 e~ek~~~eEleaK~~eLEeQLe~ 925 (1091)
..++..+.+++.+..+++++|..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~ 101 (455)
T 2dq0_A 79 REIVKRIGELENEVEELKKKIDY 101 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444443
No 199
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=20.40 E-value=2.8e+02 Score=32.21 Aligned_cols=28 Identities=11% Similarity=0.090 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001374 272 MRSAEAANKQHMEGVKKIAKLEAECQRL 299 (1091)
Q Consensus 272 ~qsaeal~KQ~lEl~KKLaKLEaEcqrL 299 (1091)
...+..+..++.++.+++..+++++..+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (455)
T 2dq0_A 75 LAKSREIVKRIGELENEVEELKKKIDYY 102 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455555555556666666655443
No 200
>2ap3_A Conserved hypothetical protein; structural genomics, tetra helix, PSI, protein structure INI midwest center for structural genomics; 1.60A {Staphylococcus aureus subsp} SCOP: a.24.27.1
Probab=20.19 E-value=7.6e+02 Score=25.81 Aligned_cols=87 Identities=13% Similarity=0.202 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHhhhhcchhhHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhHHHHhhhhhhHHHHHhhh-hHHHHHHHH
Q 001374 78 EEQIKELNEKLSAANSEISAKEDLVKQHTKVAEEAVSGWEKAEAEALALKNHLESVTLSKLTAEDRAAHL-DGALKECMR 156 (1091)
Q Consensus 78 ~~~~k~l~ekls~a~~~~~~kd~lvkqh~kvaeeav~gwekae~e~~~lK~~Le~~~~q~~~le~rv~hL-d~aLKec~~ 156 (1091)
...|..|..+=..-...|. +++.-+ =...|.+||.--++=+-.+...|.-|+.+..+.-.+...+.++ |+.+|+-..
T Consensus 39 qkkL~~LEkk~q~LY~qI~-~~~~~~-v~~~adqa~~nv~eRek~l~kEk~si~~s~kef~~~k~~i~kIeD~~~Kkqa~ 116 (199)
T 2ap3_A 39 GKKIAELDEKKKKLTEDVN-SKDTAV-RGKAVKDLIKNADDRLKEFEKEEDAIKKSEQDFKKAKSHVDNIDNDVKRKEVK 116 (199)
T ss_dssp HHHHHHHHHHHHTTTTGGG-CSSHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-----CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-HhhhHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 3444445555445555665 333222 1233788888888888888899999999999999999999999 788998888
Q ss_pred HHHhhhHHHH
Q 001374 157 QIRNLKEEHE 166 (1091)
Q Consensus 157 qLr~~reeqe 166 (1091)
+|..+-++.-
T Consensus 117 ~l~~~~k~RY 126 (199)
T 2ap3_A 117 QLDDVLKEKY 126 (199)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8877766554
No 201
>3u0c_A Invasin IPAB, 62 kDa antigen; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.05A {Shigella flexneri} PDB: 3gz1_P
Probab=20.14 E-value=7.1e+02 Score=25.50 Aligned_cols=7 Identities=29% Similarity=0.150 Sum_probs=0.0
Q ss_pred CCCCCCC
Q 001374 780 NPTSDPE 786 (1091)
Q Consensus 780 ~~~~~~~ 786 (1091)
|+++|+-
T Consensus 32 ~~~~~i~ 38 (201)
T 3u0c_A 32 HSTSNIL 38 (201)
T ss_dssp -------
T ss_pred ccccccc
Confidence 3444544
Done!