BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 001375
         (1091 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4A2Q|A Chain A, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
 pdb|4A2Q|B Chain B, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
 pdb|4A2Q|D Chain D, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
 pdb|4A2Q|E Chain E, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
          Length = 797

 Score = 32.3 bits (72), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 6/61 (9%)

Query: 794 SRTVFLHNSDAVVQLLKSCFTATLGLNSNPISSNVGVGALLGHGFGSHFCGGISPVAPGI 853
           +RT+    + A+V  LK C      +  NPI + +  G L+G G      G   P   G+
Sbjct: 632 TRTLLFAKTRALVSALKKC------MEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGV 685

Query: 854 L 854
           L
Sbjct: 686 L 686


>pdb|4A2W|A Chain A, Structure Of Full-Length Duck Rig-I
 pdb|4A2W|B Chain B, Structure Of Full-Length Duck Rig-I
          Length = 936

 Score = 32.3 bits (72), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 6/61 (9%)

Query: 794 SRTVFLHNSDAVVQLLKSCFTATLGLNSNPISSNVGVGALLGHGFGSHFCGGISPVAPGI 853
           +RT+    + A+V  LK C      +  NPI + +  G L+G G      G   P   G+
Sbjct: 632 TRTLLFAKTRALVSALKKC------MEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGV 685

Query: 854 L 854
           L
Sbjct: 686 L 686


>pdb|4A2P|A Chain A, Structure Of Duck Rig-I Helicase Domain
 pdb|4A36|A Chain A, Structure Of Duck Rig-I Helicase Domain Bound To 19-Mer
           Dsrna And Atp Transition State Analogue
 pdb|4A36|B Chain B, Structure Of Duck Rig-I Helicase Domain Bound To 19-Mer
           Dsrna And Atp Transition State Analogue
          Length = 556

 Score = 32.0 bits (71), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 6/61 (9%)

Query: 794 SRTVFLHNSDAVVQLLKSCFTATLGLNSNPISSNVGVGALLGHGFGSHFCGGISPVAPGI 853
           +RT+    + A+V  LK C      +  NPI + +  G L+G G      G   P   G+
Sbjct: 391 TRTLLFAKTRALVSALKKC------MEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGV 444

Query: 854 L 854
           L
Sbjct: 445 L 445


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.136    0.417 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,499,239
Number of Sequences: 62578
Number of extensions: 1135909
Number of successful extensions: 2225
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2225
Number of HSP's gapped (non-prelim): 3
length of query: 1091
length of database: 14,973,337
effective HSP length: 109
effective length of query: 982
effective length of database: 8,152,335
effective search space: 8005592970
effective search space used: 8005592970
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)