BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001375
(1091 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LUG9|MD33A_ARATH Mediator of RNA polymerase II transcription subunit 33A
OS=Arabidopsis thaliana GN=MED33A PE=1 SV=1
Length = 1309
Score = 1565 bits (4051), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 778/1087 (71%), Positives = 912/1087 (83%), Gaps = 19/1087 (1%)
Query: 3 LSHLLPLFRRTHWVVFIQRLRLLGANSSALKSSTILTPEDLLQLTSDTHLGLSQECKTSP 62
L +L+ R + W F+Q+++LLG NSSALK S +L DLLQL S+ G S + K +
Sbjct: 236 LLYLVSSNRASKWHEFVQKVQLLGENSSALKHSKVLNSGDLLQLISNRRFGYSYDSKVTS 295
Query: 63 QPKFDAVLAFGSLASSAGLCHGASRSALWLPLDLVLEDALDGYQVNATSAIEIITSLIKT 122
K +A++ FGSL+S AGLCHGAS S+LWLPLDLV EDA+DGYQVN TSAIEIIT L KT
Sbjct: 296 ARKSNAIVDFGSLSSYAGLCHGASLSSLWLPLDLVFEDAMDGYQVNPTSAIEIITGLAKT 355
Query: 123 LQAINGTTWHETFLGLWIAALRLVQRERDPIEGPMPRLDPRLCMLFSVTTLLIADLIDEE 182
L+ ING+TWH+TFLGLWIAALRLVQRERDPIEGP+PRLD RLCM + L++A+LI+E
Sbjct: 356 LKEINGSTWHDTFLGLWIAALRLVQRERDPIEGPIPRLDTRLCMSLCIVPLVVANLIEEG 415
Query: 183 ESAPNDETECGFTYPWKEKKVPGKRRNDLVSSLQVLGDYQGLLTPPQSVVSAANQAAAKA 242
K + V K R+DLV+SLQVLGD+ GLL PP+ VVSAAN+AA KA
Sbjct: 416 ----------------KYESVMEKLRDDLVTSLQVLGDFPGLLAPPKCVVSAANKAATKA 459
Query: 243 MLFVSGIDVGSAYFECINMKDMPVNCSGNLRHLIVEACIARNLLDTSAYFWPGYVNGHIN 302
+LF+SG +VG + F+ INMKDMPVNCSGN+RHLIVEACIARN+LD SAY WPGYVNG IN
Sbjct: 460 ILFLSGGNVGKSCFDVINMKDMPVNCSGNMRHLIVEACIARNILDMSAYSWPGYVNGRIN 519
Query: 303 QIPNTVPAQVPGWSSFTKGAPLTPLMVNALVSSPASSLAELEKVFEIAIKGADDEKIFAA 362
QIP ++P +VP WSSF KGAPL MVN LVS PASSLAELEK+FE+A+KG+DDEKI AA
Sbjct: 520 QIPQSLPNEVPCWSSFVKGAPLNAAMVNTLVSVPASSLAELEKLFEVAVKGSDDEKISAA 579
Query: 363 TVLCGASLIRGWNIQEHTVQFITRLLSPPAPAEYDGGESHLIGYAPMLNVLMVGISPVDC 422
TVLCGASL RGWNIQEHTV+++TRLLSPP PA+Y E+HLIGYA MLNV++VGI VD
Sbjct: 580 TVLCGASLTRGWNIQEHTVEYLTRLLSPPVPADYSRAENHLIGYACMLNVVIVGIGSVDS 639
Query: 423 VQIFSLHGLIPQLACSLMPICEVFGSCVPNVSWTLPTGEEISAHAVFSNAFALLLKLWRF 482
+QIFSLHG++PQLACSLMPICE FGS P+VSWTLP+GE ISA++VFSNAF LLLKLWRF
Sbjct: 640 IQIFSLHGMVPQLACSLMPICEEFGSYTPSVSWTLPSGEAISAYSVFSNAFTLLLKLWRF 699
Query: 483 NHPPIEHGVGDVPTVGSQLTPEYLLSVRNSHLLSSQSIHQDRNKRRLSAAASSSSPEPIF 542
NHPPIEHGVGDVPTVGSQLTPE+LLSVRNS+L+SS+ + +DRN++RLS A ++S +P+F
Sbjct: 700 NHPPIEHGVGDVPTVGSQLTPEHLLSVRNSYLVSSEILDRDRNRKRLSEVARAASCQPVF 759
Query: 543 VDSFPKLKVWYRQHQRCIAATLSGLVHGTQVHQTVDELLSMMFRKINRASQGLNSVASGS 602
VDSFPKLKVWYRQHQRCIAATLSGL HG+ VHQTV+ LL+M F K+ R SQ LN V SG+
Sbjct: 760 VDSFPKLKVWYRQHQRCIAATLSGLTHGSPVHQTVEALLNMTFGKV-RGSQTLNPVNSGT 818
Query: 603 SSSSGPGNEDSSLRPKLPAWDILEAVPFVVDAALTGCAHGRLSPRELATGLKDLADFLPA 662
SSSSG +EDS++RP+ PAWDIL+AVP+VVDAALT C HGRLSPR+LATGLKDLADFLPA
Sbjct: 819 SSSSGAASEDSNIRPEFPAWDILKAVPYVVDAALTACTHGRLSPRQLATGLKDLADFLPA 878
Query: 663 SLATIVSYFSAEVSRGVWKPAFMNGMDWPSPATNLTNVEEHIKKILATTGIDIPSLAAGG 722
SLATIVSYFSAEVSRGVWKP FMNG+DWPSPATNL+ VEE+I KILATTG+DIPSLA GG
Sbjct: 879 SLATIVSYFSAEVSRGVWKPVFMNGVDWPSPATNLSTVEEYITKILATTGVDIPSLAPGG 938
Query: 723 TSPATLPLPLAAFLSLTITYKIDKASERFLNLAGPALESLAAGCPWPCMPIVASLWTQKA 782
+SPATLPLPLAAF+SLTITYKIDKASERFLNLAGPALE LAAGCPWPCMPIVASLWTQKA
Sbjct: 939 SSPATLPLPLAAFVSLTITYKIDKASERFLNLAGPALECLAAGCPWPCMPIVASLWTQKA 998
Query: 783 KRWFDFLVFSASRTVFLHNSDAVVQLLKSCFTATLGLNSNPISSNVGVGALLGHGFGSHF 842
KRWFDFLVFSASRTVFLHN DAV+QLL++CF+ATLGLN+ P+S++ GVGALLGHGFGSHF
Sbjct: 999 KRWFDFLVFSASRTVFLHNQDAVIQLLRNCFSATLGLNAAPMSNDGGVGALLGHGFGSHF 1058
Query: 843 CGGISPVAPGILYLRVYRSMRDILFITEEIVSLLMHSVREIAFSGLPQEKMEKLKASKNG 902
GGISPVAPGILYLR+YR++RD + ++EEI+SLL+HSV +IA + L +EK+EKLK KNG
Sbjct: 1059 YGGISPVAPGILYLRMYRALRDTVSVSEEILSLLIHSVEDIAQNRLSKEKLEKLKTVKNG 1118
Query: 903 MRYGQVSLAAAITRVKLAASLGASLVWLSGGLGSVHSLIYETLPSWFISVHKSEHKYS-D 961
RYGQ SLA A+T+VKLAASL ASLVWL+GGLG VH LI ET+PSWF+S KS+ +
Sbjct: 1119 SRYGQSSLATAMTQVKLAASLSASLVWLTGGLGVVHVLIKETIPSWFLSTDKSDREQGPS 1178
Query: 962 GLVSMLGGYALAYFAVLCGALAWGVDSSSLASKRRPK-ILGFHMEFLASALDGKISLGCD 1020
LV+ L G+ALAYF VLCGAL WGVDS S ASKRR + ILG H+EF+ASALDGKIS+GC+
Sbjct: 1179 DLVAELRGHALAYFVVLCGALTWGVDSRSSASKRRRQAILGSHLEFIASALDGKISVGCE 1238
Query: 1021 SATWHAYVSGFMSLMVSCTPTWVLEVDVEVLKRLSKGLKQWNEEELAIALLGIGGLGTMG 1080
+ATW Y+SG +SLMVSC P WV E+D EVLK LS GL++W ++ELAI LL +GGL TM
Sbjct: 1239 TATWRTYISGLVSLMVSCLPLWVTEIDTEVLKSLSNGLRKWGKDELAIVLLSLGGLKTMD 1298
Query: 1081 AAAELII 1087
AA+ II
Sbjct: 1299 YAADFII 1305
>sp|F4IN69|MD33B_ARATH Mediator of RNA polymerase II transcription subunit 33B
OS=Arabidopsis thaliana GN=MED33B PE=1 SV=1
Length = 1275
Score = 1208 bits (3125), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 641/1056 (60%), Positives = 776/1056 (73%), Gaps = 51/1056 (4%)
Query: 55 SQECKTSPQPKFDAVLAFGSLASSAGLCHGASRSALWLPLDLVLEDALDGYQVNATSAIE 114
+ E KT P+ +F A+++ GS + S SALWLP+DL ED +DG Q A SA+E
Sbjct: 244 NMESKTIPRGEFHAIVSSGSKLALT------SDSALWLPIDLFFEDIMDGTQAAAASAVE 297
Query: 115 IITSLIKTLQAINGTTWHETFLGLWIAALRLVQRE-------------------RDPIEG 155
+T L+K LQA N T+WH+ FL LW+AALRLVQRE RDPIEG
Sbjct: 298 NLTGLVKALQAANSTSWHDAFLALWLAALRLVQRENLCLRYCFFMHMLEILSEERDPIEG 357
Query: 156 PMPRLDPRLCMLFSVTTLLIADLIDEEESAPNDETECGFTYPWKEKKVPGKRRNDLVSSL 215
P+PR D LC+L SVT L +A++I+EEES D+T + WKEKK GK R L++SL
Sbjct: 358 PVPRTDTFLCVLLSVTPLAVANIIEEEESQWIDQTSSSPSNQWKEKK--GKCRQGLINSL 415
Query: 216 QVLGDYQGLLTPPQSVVSAANQAAAKAMLFVSGIDVGSAYFECINMKDMPVNCSGNLRHL 275
Q LGDY+ LLTPP+SV S ANQAAAKA++F+SGI + +E +M + C
Sbjct: 416 QQLGDYESLLTPPRSVQSVANQAAAKAIMFISGITNSNGSYENTSMSESASGC------- 468
Query: 276 IVEACIARNLLDTSAYFWPGYVNGHINQIPNTVPAQVPGWSSFTKGAPLTPLMVNALVSS 335
C R L T F V N + WS KG+PLTP + N+L+++
Sbjct: 469 ----CKVRFSLFTLKMFVVMGVYLLCN---------ISCWSLVMKGSPLTPSLTNSLITT 515
Query: 336 PASSLAELEKVFEIAIKGADDEKIFAATVLCGASLIRGWNIQEHTVQFITRLLSPPAPAE 395
PASSLAE+EK++E+A G++DEKI A++LCGASL RGW+IQEH + FI LLSPPAPA+
Sbjct: 516 PASSLAEIEKMYEVATTGSEDEKIAVASILCGASLFRGWSIQEHVIIFIVTLLSPPAPAD 575
Query: 396 YDGGESHLIGYAPMLNVLMVGISPVDCVQIFSLHGLIPQLACSLMPICEVFGSCVPNVSW 455
G SHLI AP LNVL+VGISP+DCV IFSLHG++P LA +LMPICE FGS VPN++W
Sbjct: 576 LSGSYSHLINSAPFLNVLLVGISPIDCVHIFSLHGVVPLLAGALMPICEAFGSGVPNITW 635
Query: 456 TLPTGEEISAHAVFSNAFALLLKLWRFNHPPIEHGVGDVPTVGSQLTPEYLLSVRNSHLL 515
TLPTGE IS+HAVFS AF LLL+LWRF+HPP+++ +GDVP VG Q +PEYLL VRN L
Sbjct: 636 TLPTGELISSHAVFSTAFTLLLRLWRFDHPPLDYVLGDVPPVGPQPSPEYLLLVRNCRLE 695
Query: 516 SSQSIHQDRNKRRLSAAASSSSPEPIFVDSFPKLKVWYRQHQRCIAATLSGLVHGTQVHQ 575
+DR RR + S +PIF+DSFP+LK WYRQHQ C+A+ LS L G+ VH
Sbjct: 696 CFGKSPKDRMARRRFSKVIDISVDPIFMDSFPRLKQWYRQHQECMASILSELKTGSPVHH 755
Query: 576 TVDELLSMMFRKINRASQGLNSVASGSSSSSGPGNEDSSLRPKLPAWDILEAVPFVVDAA 635
VD LLSMMF+K N+ + +SGSSS S G +DSS + KLPAWDILEA PFV+DAA
Sbjct: 756 IVDSLLSMMFKKANKGGSQSLTPSSGSSSLSTSGGDDSSDQLKLPAWDILEAAPFVLDAA 815
Query: 636 LTGCAHGRLSPRELATGLKDLADFLPASLATIVSYFSAEVSRGVWKPAFMNGMDWPSPAT 695
LT CAHG LSPRELATGLK LADFLPA+L T+VSYFS+EV+RG+WKP MNG DWPSPA
Sbjct: 816 LTACAHGSLSPRELATGLKILADFLPATLGTMVSYFSSEVTRGLWKPVSMNGTDWPSPAA 875
Query: 696 NLTNVEEHIKKILATTGIDIPSLAAGGTSPATLPLPLAAFLSLTITYKIDKASERFLNLA 755
NL +VE+ I+KILA TG+D+P L A G S ATLPLPLAA +SLTITYK+DKA+ERFL L
Sbjct: 876 NLASVEQQIEKILAATGVDVPRLPADGISAATLPLPLAALVSLTITYKLDKATERFLVLV 935
Query: 756 GPALESLAAGCPWPCMPIVASLWTQKAKRWFDFLVFSASRTVFLHNSDAVVQLLKSCFTA 815
GPAL+SLAA CPWPCMPIV SLWTQK KRW DFL+FSASRTVF HN DAV+QLL+SCFT
Sbjct: 936 GPALDSLAAACPWPCMPIVTSLWTQKVKRWSDFLIFSASRTVFHHNRDAVIQLLRSCFTC 995
Query: 816 TLGLN-SNPISSNVGVGALLGHGFGSHFCGGISPVAPGILYLRVYRSMRDILFITEEIVS 874
TLGL ++ + S GVGALLGHGFGS + GGIS APGILY++V+RS+RD++F+TEEI+S
Sbjct: 996 TLGLTPTSQLCSYGGVGALLGHGFGSRYSGGISTAAPGILYIKVHRSIRDVMFLTEEILS 1055
Query: 875 LLMHSVREIAFSGLPQEKMEKLKASKNGMRY--GQVSLAAAITRVKLAASLGASLVWLSG 932
LLM SV+ IA LP + EKLK +K+G RY GQVSL+ A+ RVKLAASLGASLVW+SG
Sbjct: 1056 LLMFSVKSIATRELPAGQAEKLKKTKDGSRYGIGQVSLSLAMRRVKLAASLGASLVWISG 1115
Query: 933 GLGSVHSLIYETLPSWFISVHKSEHKYSDGLVSMLGGYALAYFAVLCGALAWGVDSSSLA 992
GL V +LI ETLPSWFISVH E + G+V ML GYALAYFA+L A AWGVDSS A
Sbjct: 1116 GLNLVQALIKETLPSWFISVHGEEDELG-GMVPMLRGYALAYFAILSSAFAWGVDSSYPA 1174
Query: 993 SKRRPKILGFHMEFLASALDGKISLGCDSATWHAYVSGFMSLMVSCTPTWVLEVDVEVLK 1052
SKRRP++L H+EF+ SAL+GKISLGCD ATW AYV+GF+SLMV CTP WVLEVDVEV+K
Sbjct: 1175 SKRRPRVLWLHLEFMVSALEGKISLGCDWATWQAYVTGFVSLMVQCTPAWVLEVDVEVIK 1234
Query: 1053 RLSKGLKQWNEEELAIALLGIGGLGTMGAAAELIIE 1088
RLSK L+QWNE++LA+ALL GGLGTMGAA ELI+E
Sbjct: 1235 RLSKSLRQWNEQDLALALLCAGGLGTMGAATELIVE 1270
>sp|O32137|ALLB_BACSU Allantoinase OS=Bacillus subtilis (strain 168) GN=allB PE=2 SV=1
Length = 446
Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 258 CINMKDMPVNC---SGNLRHLIVEACIARNLLDTSAYFWPGYVNGHINQIPNTVPAQVPG 314
C DMP+NC + HL+ +A + R W G V GHI I A G
Sbjct: 86 CTTYFDMPLNCIPSTVTAEHLLAKAELGRQKSAVDFALWGGLVPGHIEDIRPMAEAGAIG 145
Query: 315 WSSF 318
+ +F
Sbjct: 146 FKAF 149
>sp|C5CDZ1|PSUG_KOSOT Pseudouridine-5'-phosphate glycosidase OS=Kosmotoga olearia (strain
TBF 19.5.1) GN=psuG PE=3 SV=1
Length = 289
Score = 35.4 bits (80), Expect = 2.7, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 10/62 (16%)
Query: 887 GLPQEKMEKLKASKNGMRYGQVSLAAAIT-RVKLAASLGASL---------VWLSGGLGS 936
GL ++++E L +KN M+ G +AAAI R A ++ A++ V+ +GG+G
Sbjct: 54 GLTEKEIEHLAKAKNVMKIGTAEIAAAIALRRNAATTVSATMRLAKNAGIDVFATGGIGG 113
Query: 937 VH 938
VH
Sbjct: 114 VH 115
>sp|A2AX52|CO6A4_MOUSE Collagen alpha-4(VI) chain OS=Mus musculus GN=Col6a4 PE=1 SV=2
Length = 2309
Score = 34.3 bits (77), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 13/118 (11%)
Query: 488 EHGVGD-VPTVGSQLTPEYLLSVRNSHLLSSQSIHQDRNKRRLSAAASSSSPEPIFVDSF 546
E VGD V V + + P++ SVRN + + S+ R+ R+ A S +P F+
Sbjct: 29 EASVGDIVFLVHNSINPQHAHSVRNFLYILANSLQVGRDNIRVGLAQYSDTPTSEFL--- 85
Query: 547 PKLKVWYRQHQRCIAATLSGLVH---GTQVHQTVDELLSMMFRK--INRASQGLNSVA 599
L V++R+ + + GL G ++ Q + +L FR+ +RASQG+ VA
Sbjct: 86 --LSVYHRKGD--VLKHIRGLQFKPGGNRMGQALQFILEHHFREGAGSRASQGVPQVA 139
>sp|Q3J872|PYRC_NITOC Dihydroorotase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB
11848) GN=pyrC PE=3 SV=1
Length = 345
Score = 34.3 bits (77), Expect = 6.0, Method: Composition-based stats.
Identities = 40/153 (26%), Positives = 67/153 (43%), Gaps = 22/153 (14%)
Query: 495 PTVGSQLTPEYLLSVRNSHLLSSQSIH--------QDRNKRRLSAAASSSSPEPIF-VDS 545
P + + +TP +LL RN+ L H ++ +++ L AAA+S +P+ DS
Sbjct: 190 PNIAATITPHHLLFNRNALLAGGIQPHYYCLPVLKREIHRQALVAAATSGNPKFFLGTDS 249
Query: 546 FPKLKVWYRQHQRCIAATLSGLVHGTQVHQTVDELLSMMFRKINRASQGLNSVAS--GSS 603
P H + T G H + EL + F + + A + L + AS G
Sbjct: 250 AP--------HAKTAKETACGCAGIYSSHAAL-ELYAEAFEEAS-ALEKLEAFASFHGPD 299
Query: 604 SSSGPGNEDSSLRPKLPAWDILEAVPFVVDAAL 636
P N+D+ K P W + E++P+ DA +
Sbjct: 300 FYGLPRNQDTVTLIKTP-WQVPESLPYGDDALI 331
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 398,121,013
Number of Sequences: 539616
Number of extensions: 16620029
Number of successful extensions: 41285
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 41263
Number of HSP's gapped (non-prelim): 21
length of query: 1091
length of database: 191,569,459
effective HSP length: 128
effective length of query: 963
effective length of database: 122,498,611
effective search space: 117966162393
effective search space used: 117966162393
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 67 (30.4 bits)