Query 001375
Match_columns 1091
No_of_seqs 44 out of 46
Neff 2.6
Searched_HMMs 29240
Date Tue Mar 26 00:54:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001375.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001375hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i5o_A DNA polymerase ETA; zin 27.5 29 0.001 27.7 2.0 21 366-387 15-36 (39)
2 3e2u_E CAP-Gly domain-containi 23.4 16 0.00055 30.0 -0.2 7 442-448 25-31 (42)
3 2hqh_E Restin; beta/BETA struc 19.4 22 0.00074 26.8 -0.2 7 442-448 8-14 (26)
4 2pzo_E CAP-Gly domain-containi 18.8 23 0.00078 29.1 -0.2 7 442-448 25-31 (42)
5 1k3y_A GSTA1-1, glutathione S- 18.0 97 0.0033 29.4 3.9 25 541-565 172-198 (221)
6 3tou_A Glutathione S-transfera 14.5 45 0.0016 31.9 0.7 35 542-576 178-214 (226)
7 3lsz_A Glutathione S-transfera 14.1 57 0.002 30.9 1.2 34 541-574 187-222 (225)
8 3ik7_A Glutathione S-transfera 12.6 1.2E+02 0.0041 28.6 3.0 25 541-565 173-199 (222)
9 3sp1_A Cysteinyl-tRNA syntheta 11.6 61 0.0021 37.2 0.7 21 789-809 256-276 (501)
10 1g12_A Peptidyl-Lys metalloend 11.2 37 0.0013 33.2 -1.0 48 995-1043 52-102 (167)
No 1
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=27.47 E-value=29 Score=27.70 Aligned_cols=21 Identities=33% Similarity=0.816 Sum_probs=18.7
Q ss_pred cccccccccchhhHH-HHHHHHh
Q 001375 366 CGASLIRGWNIQEHT-VQFITRL 387 (1091)
Q Consensus 366 CGASL~RGWnIQEH~-v~~vvkL 387 (1091)
||..+-- |..|||. -||..+|
T Consensus 15 C~~~i~~-~~~~EH~D~H~A~~L 36 (39)
T 2i5o_A 15 CGSLVPV-WDMPEHMDYHFALEL 36 (39)
T ss_dssp TCCEEEG-GGHHHHHHHHHHHHH
T ss_pred ccCcCCc-ccccchhhHHHHHHH
Confidence 8988776 9999999 9999887
No 2
>3e2u_E CAP-Gly domain-containing linker protein 1; structural protein microtubule binding, dynactin, cytoskelet associated protein, P150glued; 2.60A {Homo sapiens}
Probab=23.37 E-value=16 Score=30.04 Aligned_cols=7 Identities=71% Similarity=1.621 Sum_probs=5.6
Q ss_pred hhhhhcC
Q 001375 442 ICEVFGS 448 (1091)
Q Consensus 442 iCEvFGS 448 (1091)
+|||||-
T Consensus 25 ~CEVFGH 31 (42)
T 3e2u_E 25 ICEMFGH 31 (42)
T ss_dssp TTTEESS
T ss_pred cceeccc
Confidence 7899984
No 3
>2hqh_E Restin; beta/BETA structure, zinc finger motif, structural protein, binding; 1.80A {Homo sapiens}
Probab=19.38 E-value=22 Score=26.81 Aligned_cols=7 Identities=71% Similarity=1.621 Sum_probs=5.9
Q ss_pred hhhhhcC
Q 001375 442 ICEVFGS 448 (1091)
Q Consensus 442 iCEvFGS 448 (1091)
+||+||-
T Consensus 8 ~CE~FGH 14 (26)
T 2hqh_E 8 ICEMFGH 14 (26)
T ss_dssp TTTEESS
T ss_pred HHHHhCc
Confidence 7999985
No 4
>2pzo_E CAP-Gly domain-containing linker protein 1; structural protein microtubule binding, dynactin, cytoskeleton associated protein, P150glued; 2.60A {Homo sapiens} PDB: 3e2u_E
Probab=18.78 E-value=23 Score=29.15 Aligned_cols=7 Identities=71% Similarity=1.621 Sum_probs=5.8
Q ss_pred hhhhhcC
Q 001375 442 ICEVFGS 448 (1091)
Q Consensus 442 iCEvFGS 448 (1091)
||||||-
T Consensus 25 ~CEvFGH 31 (42)
T 2pzo_E 25 ICEMFGH 31 (42)
T ss_dssp TTTEESS
T ss_pred cccccCc
Confidence 7999984
No 5
>1k3y_A GSTA1-1, glutathione S-transferase A1; S-hexyl glutatione, water structu transferase; HET: GTX; 1.30A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 1gsf_A* 1guh_A* 1gsd_A* 1k3o_A 1k3l_A* 1pl1_A* 1pkz_A 1pkw_A* 2r6k_A* 1gse_A* 3u6v_A 1usb_A* 1ydk_A* 3q74_A 3ktl_A* 1pl2_A* 2r3x_A* 1xwg_A 3l0h_A* 1ags_A* ...
Probab=17.99 E-value=97 Score=29.39 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=17.9
Q ss_pred ccccccchhHHHH--HhhhhHHHHhhh
Q 001375 541 IFVDSFPKLKVWY--RQHQRCIAATLS 565 (1091)
Q Consensus 541 v~iDSFPKLk~WY--~Q~qaCiAStlS 565 (1091)
..++.||+|++|| .+....+..++.
T Consensus 172 ~~~~~~p~l~~w~~~i~~~p~~~~~~~ 198 (221)
T 1k3y_A 172 SLISSFPLLKALKTRISNLPTVKKFLQ 198 (221)
T ss_dssp TTTTTCHHHHHHHHHHHHSHHHHHHHS
T ss_pred hhhhcCchHHHHHHHHHhCHHHHHHHH
Confidence 3468899999999 445556666664
No 6
>3tou_A Glutathione S-transferase protein; GSH binding site, GSH; HET: GSH; 1.75A {Ralstonia solanacearum} PDB: 3tot_A*
Probab=14.47 E-value=45 Score=31.86 Aligned_cols=35 Identities=9% Similarity=0.095 Sum_probs=27.9
Q ss_pred cccccchhHHHH--HhhhhHHHHhhhcccCCCchhHH
Q 001375 542 FVDSFPKLKVWY--RQHQRCIAATLSGLVHGTQVHQT 576 (1091)
Q Consensus 542 ~iDSFPKLk~WY--~Q~qaCiAStlSgl~~g~pvhqv 576 (1091)
..+.||+|+.|| .+.+..+..++...-+.+|..+-
T Consensus 178 ~~~~~p~l~~w~~r~~~~p~~~~~~~~~~~~~~~~~~ 214 (226)
T 3tou_A 178 WREQHANLAAFYTRIEKRPSFLETQPQAENLYFQSHH 214 (226)
T ss_dssp HHHHCHHHHHHHHHHHTSHHHHTTCGGGGGCGGGCC-
T ss_pred hhhcChHHHHHHHHHhcCHHHHHhCcchhhhhhhhcc
Confidence 468899999999 66778888888888888776543
No 7
>3lsz_A Glutathione S-transferase; xenobiotic, biodegradative metabolism, PSI2, NYSGXRC, structural genomics, protein structure initiative; HET: GSH; 1.70A {Rhodobacter sphaeroides}
Probab=14.08 E-value=57 Score=30.87 Aligned_cols=34 Identities=15% Similarity=0.378 Sum_probs=25.3
Q ss_pred ccccccchhHHHH--HhhhhHHHHhhhcccCCCchh
Q 001375 541 IFVDSFPKLKVWY--RQHQRCIAATLSGLVHGTQVH 574 (1091)
Q Consensus 541 v~iDSFPKLk~WY--~Q~qaCiAStlSgl~~g~pvh 574 (1091)
...+.||+|+.|| .+.+..+..++..--.++|-|
T Consensus 187 ~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~~~~~~ 222 (225)
T 3lsz_A 187 ALLEPFPAVAAWLDRCQSRPAFRLMMERRAAEGHHH 222 (225)
T ss_dssp TTTTTCHHHHHHHHHHHTSHHHHHHHHHHHHCCCCC
T ss_pred CCcccChHHHHHHHHHHcCHHHHHHHhhccccCCcc
Confidence 3468899999999 566677777777666666654
No 8
>3ik7_A Glutathione S-transferase A4; human GST A4-4, enzyme, cytoplasm, polymorphism; HET: BOB; 1.97A {Homo sapiens} PDB: 1gum_A 1gul_A*
Probab=12.60 E-value=1.2e+02 Score=28.58 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=17.7
Q ss_pred ccccccchhHHHH--HhhhhHHHHhhh
Q 001375 541 IFVDSFPKLKVWY--RQHQRCIAATLS 565 (1091)
Q Consensus 541 v~iDSFPKLk~WY--~Q~qaCiAStlS 565 (1091)
...+.||+|++|| .+....+..++.
T Consensus 173 ~~~~~~p~l~~w~~~~~~~p~~~~~~~ 199 (222)
T 3ik7_A 173 NILSAFPFLQEYTVKLSNIPTIKRFLE 199 (222)
T ss_dssp TTTTTCHHHHHHHHHHHTSHHHHHHHS
T ss_pred hhhhcChHHHHHHHHHHcCHHHHHHHc
Confidence 3568899999999 445555655554
No 9
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=11.62 E-value=61 Score=37.18 Aligned_cols=21 Identities=5% Similarity=0.108 Sum_probs=13.4
Q ss_pred EEEeecccccccChHHHHHHH
Q 001375 789 LVFSASRTVFLHNSDAVVQLL 809 (1091)
Q Consensus 789 iV~S~SrtvF~hn~dAVaQLl 809 (1091)
|-..+.--+|-|-.+-++|..
T Consensus 256 IH~gG~DLifpHheneiAqs~ 276 (501)
T 3sp1_A 256 IHLGGVDHIGVHHINEIAIAE 276 (501)
T ss_dssp EEEEEGGGTTTHHHHHHHHHH
T ss_pred EEeeccccccchHHHHHHHHH
Confidence 555666666666666677753
No 10
>1g12_A Peptidyl-Lys metalloendopeptidase; zinc cordinate,metalloprotease, hydrolase; HET: MAN; 1.60A {Grifola frondosa} SCOP: d.92.1.12 PDB: 1ge5_A* 1ge6_A* 1ge7_A*
Probab=11.19 E-value=37 Score=33.17 Aligned_cols=48 Identities=23% Similarity=0.278 Sum_probs=36.0
Q ss_pred cchhHHhhHHHHHHHhhcCceecccCchh--hhHHHHhhhhh-hccccccch
Q 001375 995 RRPKILGFHMEFLASALDGKISLGCDSAT--WHAYVSGFMSL-MVSCTPTWV 1043 (1091)
Q Consensus 995 rR~rV~g~HmeFlAs~LdG~IsLgC~~~t--WraYVsgfv~L-mV~~~P~Wi 1043 (1091)
+|.+|.+ |++=+++.-+|.+.+.|++.. |-|||..==.. ++-|-+-|=
T Consensus 52 ~~~~V~~-~f~~i~~~~~~~~~~~C~C~~~~~~Ay~~p~~~~~i~~Cp~f~~ 102 (167)
T 1g12_A 52 RHSTVLQ-HYTDMNSNDFSSYSFDCTCTAAGTFAYVYPNRFGTVYLCGAFWK 102 (167)
T ss_dssp HHHHHHH-HHHHHHTSCGGGCEEECCCCCSSCCEECCTTSTTEEEECGGGGG
T ss_pred HHHHHHH-HHHHHHhccCCceeEeeccCCCCcEEEEeCCCCCeEEECCchhc
Confidence 6667765 888899888889999999864 88888754443 677776663
Done!