BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 001377
         (1090 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4A35|A Chain A, Crystal Structure Of Human Mitochondrial Enolase
           Superfamily Member 1 (Enosf1)
          Length = 441

 Score = 30.8 bits (68), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 13/26 (50%), Positives = 19/26 (73%)

Query: 869 PVFDPLVDMDPRLVVSFLDLPRESDI 894
           PV+  LVDMDPR++VS +D    +D+
Sbjct: 134 PVWKLLVDMDPRMLVSCIDFRYITDV 159


>pdb|3K7L|A Chain A, Structures Of Two Elapid Snake Venom Metalloproteases With
           Distinct Activities Highlight The Disulfide Patterns In
           The D Domain Of Adamalysin Family Proteins
          Length = 422

 Score = 29.6 bits (65), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 587 RNVPCGSKDIRCNKLCGKTRQCGMHACGRTCHPPPCDTACNSEPGSKASCGQVC 640
           R +PC +KD++C +L  K R   +  C  +   P        EPG+K   G VC
Sbjct: 360 RKIPCAAKDVKCGRLFCKRRNSMICNCSISPRDPNYGMV---EPGTKCGDGMVC 410


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.134    0.454 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,750,839
Number of Sequences: 62578
Number of extensions: 1324995
Number of successful extensions: 2890
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 2855
Number of HSP's gapped (non-prelim): 42
length of query: 1090
length of database: 14,973,337
effective HSP length: 109
effective length of query: 981
effective length of database: 8,152,335
effective search space: 7997440635
effective search space used: 7997440635
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)