Query 001378
Match_columns 1090
No_of_seqs 410 out of 956
Neff 5.4
Searched_HMMs 29240
Date Tue Mar 26 01:02:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001378.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001378hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1whr_A Hypothetical KIAA1002 p 99.3 1.2E-11 4E-16 120.7 11.8 86 765-858 15-103 (124)
2 2cpm_A Sperm-associated antige 99.3 7.4E-12 2.5E-16 116.5 8.4 63 777-846 10-74 (94)
3 3gku_A Probable RNA-binding pr 98.7 5.2E-09 1.8E-13 111.5 3.5 69 778-846 141-210 (225)
4 1msz_A DNA-binding protein smu 98.5 2E-07 6.9E-12 85.1 7.2 61 781-848 19-80 (86)
5 1iym_A EL5; ring-H2 finger, ub 97.6 3.9E-05 1.3E-09 63.1 4.0 51 109-173 3-53 (55)
6 2ecm_A Ring finger and CHY zin 97.4 8.7E-05 3E-09 60.9 3.0 51 109-173 3-53 (55)
7 1x4j_A Ring finger protein 38; 97.2 0.00017 5.9E-09 63.3 3.8 51 109-174 21-71 (75)
8 2ct0_A Non-SMC element 1 homol 97.2 0.00022 7.5E-09 63.6 4.0 50 110-174 14-63 (74)
9 2kiz_A E3 ubiquitin-protein li 97.1 0.00041 1.4E-08 59.7 4.4 51 110-175 13-63 (69)
10 2ep4_A Ring finger protein 24; 97.0 0.00047 1.6E-08 60.1 4.6 51 110-175 14-64 (74)
11 2ect_A Ring finger protein 126 97.0 0.00046 1.6E-08 60.8 4.2 51 110-175 14-64 (78)
12 1v87_A Deltex protein 2; ring- 96.9 0.00023 8E-09 67.3 1.9 70 97-175 10-94 (114)
13 2l0b_A E3 ubiquitin-protein li 96.8 0.00078 2.7E-08 61.6 4.4 49 110-173 39-87 (91)
14 2xeu_A Ring finger protein 4; 96.8 0.00037 1.3E-08 58.6 2.0 54 109-176 1-57 (64)
15 3ng2_A RNF4, snurf, ring finge 96.8 0.00054 1.8E-08 59.0 2.8 54 109-176 8-64 (71)
16 2ea6_A Ring finger protein 4; 96.6 0.00077 2.6E-08 57.5 2.2 51 109-173 13-66 (69)
17 2pt7_G HP1451, hypothetical pr 96.5 0.00086 3E-08 67.6 2.5 57 778-845 80-137 (152)
18 2d8s_A Cellular modulator of i 96.4 0.0019 6.7E-08 58.1 3.5 54 110-175 14-70 (80)
19 2ct2_A Tripartite motif protei 96.3 0.0027 9.4E-08 56.7 4.3 55 110-175 14-68 (88)
20 2d8t_A Dactylidin, ring finger 96.3 0.0022 7.6E-08 55.6 3.3 47 110-174 14-60 (71)
21 1chc_A Equine herpes virus-1 r 96.2 0.0021 7.1E-08 55.0 2.5 50 108-174 2-51 (68)
22 2ysl_A Tripartite motif-contai 96.1 0.0047 1.6E-07 53.4 4.5 51 110-175 19-69 (73)
23 2ecl_A Ring-box protein 2; RNF 96.1 0.002 7E-08 57.6 2.2 49 112-174 16-75 (81)
24 2ecy_A TNF receptor-associated 96.0 0.0049 1.7E-07 52.5 4.0 49 110-175 14-62 (66)
25 2egp_A Tripartite motif-contai 95.7 0.0042 1.4E-07 54.4 2.6 55 110-175 11-65 (79)
26 2ecj_A Tripartite motif-contai 95.6 0.009 3.1E-07 49.2 3.8 45 110-169 14-58 (58)
27 2ysj_A Tripartite motif-contai 95.5 0.0071 2.4E-07 51.0 3.1 45 110-169 19-63 (63)
28 2djb_A Polycomb group ring fin 95.5 0.0077 2.6E-07 52.3 3.3 49 110-175 14-62 (72)
29 2ecn_A Ring finger protein 141 95.5 0.003 1E-07 54.3 0.7 46 110-174 14-59 (70)
30 4ap4_A E3 ubiquitin ligase RNF 95.5 0.0056 1.9E-07 58.5 2.6 55 107-175 3-60 (133)
31 2ecv_A Tripartite motif-contai 95.5 0.005 1.7E-07 54.4 2.0 54 110-175 18-71 (85)
32 2csy_A Zinc finger protein 183 95.4 0.0093 3.2E-07 52.9 3.5 47 110-174 14-60 (81)
33 3nw0_A Non-structural maintena 95.4 0.016 5.4E-07 62.5 6.0 65 95-174 164-228 (238)
34 1jm7_A BRCA1, breast cancer ty 95.3 0.013 4.4E-07 54.8 4.4 51 110-175 20-70 (112)
35 1g25_A CDK-activating kinase a 95.2 0.012 4E-07 50.0 3.5 52 110-175 2-55 (65)
36 3lrq_A E3 ubiquitin-protein li 95.2 0.0098 3.4E-07 55.2 3.3 49 111-175 22-70 (100)
37 3ctr_A Poly(A)-specific ribonu 95.2 0.018 6.2E-07 53.9 5.0 57 881-938 9-65 (101)
38 1whv_A Poly(A)-specific ribonu 95.2 0.015 5.3E-07 54.3 4.3 58 881-939 19-76 (100)
39 2ecw_A Tripartite motif-contai 95.1 0.009 3.1E-07 52.7 2.6 54 110-175 18-71 (85)
40 2yur_A Retinoblastoma-binding 95.1 0.016 5.4E-07 50.7 4.0 49 110-173 14-62 (74)
41 3fl2_A E3 ubiquitin-protein li 95.0 0.02 6.8E-07 54.9 4.7 57 96-174 42-98 (124)
42 3dpl_R Ring-box protein 1; ubi 94.8 0.018 6.3E-07 54.5 4.0 46 112-173 38-99 (106)
43 4ap4_A E3 ubiquitin ligase RNF 94.8 0.0075 2.6E-07 57.6 1.1 54 109-176 70-126 (133)
44 4ayc_A E3 ubiquitin-protein li 94.7 0.03 1E-06 54.8 5.4 46 111-174 53-98 (138)
45 1e4u_A Transcriptional repress 94.2 0.038 1.3E-06 49.4 4.4 53 110-176 10-63 (78)
46 2y43_A E3 ubiquitin-protein li 94.1 0.02 6.9E-07 52.6 2.4 47 111-174 22-68 (99)
47 1z6u_A NP95-like ring finger p 93.8 0.019 6.4E-07 57.5 1.7 48 111-175 78-125 (150)
48 1vyx_A ORF K3, K3RING; zinc-bi 93.5 0.036 1.2E-06 47.2 2.6 53 109-174 4-58 (60)
49 2ckl_B Ubiquitin ligase protei 93.4 0.04 1.4E-06 55.4 3.4 49 110-174 53-101 (165)
50 4a0k_B E3 ubiquitin-protein li 93.2 0.016 5.3E-07 56.0 0.0 47 113-173 50-110 (117)
51 3ztg_A E3 ubiquitin-protein li 93.0 0.066 2.3E-06 48.3 3.8 49 110-173 12-60 (92)
52 1t1h_A Gspef-atpub14, armadill 92.8 0.077 2.6E-06 46.4 3.9 48 110-174 7-54 (78)
53 2ckl_A Polycomb group ring fin 92.2 0.089 3E-06 49.1 3.7 49 110-175 14-62 (108)
54 3l11_A E3 ubiquitin-protein li 91.5 0.056 1.9E-06 51.0 1.5 47 111-174 15-61 (115)
55 1rmd_A RAG1; V(D)J recombinati 91.4 0.1 3.4E-06 49.3 3.1 48 111-175 23-70 (116)
56 3hct_A TNF receptor-associated 91.3 0.081 2.8E-06 50.3 2.3 49 110-175 17-65 (118)
57 3k1l_B Fancl; UBC, ring, RWD, 90.2 0.074 2.5E-06 59.9 1.1 62 110-174 307-372 (381)
58 2lri_C Autoimmune regulator; Z 88.5 0.26 8.8E-06 42.8 3.0 48 112-173 13-60 (66)
59 1jm7_B BARD1, BRCA1-associated 87.5 0.32 1.1E-05 46.1 3.3 46 110-174 21-66 (117)
60 1ug8_A Poly(A)-specific ribonu 86.9 1.8 6.3E-05 39.6 7.7 62 776-843 9-73 (87)
61 4ic3_A E3 ubiquitin-protein li 86.0 0.45 1.5E-05 41.5 3.2 54 94-174 12-66 (74)
62 1wim_A KIAA0161 protein; ring 84.8 0.38 1.3E-05 43.7 2.2 57 109-172 3-61 (94)
63 3knv_A TNF receptor-associated 81.6 0.23 7.8E-06 49.1 -0.7 47 110-173 30-76 (141)
64 2y1n_A E3 ubiquitin-protein li 81.2 1.3 4.4E-05 50.9 5.1 52 106-174 327-378 (389)
65 3hcs_A TNF receptor-associated 79.2 0.83 2.8E-05 45.9 2.4 48 110-174 17-64 (170)
66 2vje_B MDM4 protein; proto-onc 76.2 1.3 4.3E-05 37.6 2.3 52 107-174 3-55 (63)
67 2l5u_A Chromodomain-helicase-D 75.5 1.1 3.8E-05 38.1 1.8 48 111-172 11-58 (61)
68 1f62_A Transcription factor WS 75.1 1.4 4.9E-05 35.7 2.3 49 113-172 2-50 (51)
69 1bor_A Transcription factor PM 74.3 1 3.6E-05 37.0 1.3 45 110-175 5-49 (56)
70 1wil_A KIAA1045 protein; ring 71.9 3 0.0001 37.9 3.7 60 113-174 17-78 (89)
71 2ecg_A Baculoviral IAP repeat- 71.3 5.1 0.00017 34.7 5.1 53 95-174 14-67 (75)
72 3d45_A Poly(A)-specific ribonu 70.0 4.8 0.00016 47.7 6.1 60 879-939 441-500 (507)
73 2vje_A E3 ubiquitin-protein li 64.3 3.6 0.00012 34.8 2.6 49 110-174 7-56 (64)
74 2vpb_A Hpygo1, pygopus homolog 63.8 1.3 4.6E-05 38.2 -0.2 56 109-170 6-64 (65)
75 2ysm_A Myeloid/lymphoid or mix 63.5 2.5 8.7E-05 39.7 1.6 50 110-170 6-55 (111)
76 1xwh_A Autoimmune regulator; P 62.9 1.2 4.2E-05 38.3 -0.6 51 110-174 7-57 (66)
77 3v43_A Histone acetyltransfera 62.6 1.5 5.3E-05 41.5 -0.1 52 112-170 6-62 (112)
78 1mm2_A MI2-beta; PHD, zinc fin 62.4 1.9 6.3E-05 36.7 0.4 48 111-172 9-56 (61)
79 3v43_A Histone acetyltransfera 61.9 3.9 0.00013 38.7 2.6 60 102-171 46-111 (112)
80 2yql_A PHD finger protein 21A; 60.4 1 3.4E-05 37.6 -1.6 46 111-170 9-54 (56)
81 3o36_A Transcription intermedi 59.7 2.4 8.4E-05 43.3 0.8 47 113-173 6-52 (184)
82 2puy_A PHD finger protein 21A; 56.0 1.8 6.1E-05 36.5 -0.8 50 110-173 4-53 (60)
83 3u5n_A E3 ubiquitin-protein li 53.9 3.1 0.00011 43.4 0.5 48 112-173 8-55 (207)
84 3ql9_A Transcriptional regulat 53.8 6.9 0.00024 38.3 2.8 53 113-172 59-111 (129)
85 1fp0_A KAP-1 corepressor; PHD 53.5 5.4 0.00018 36.6 1.9 49 110-172 24-72 (88)
86 2e5i_A Heterogeneous nuclear r 51.0 49 0.0017 31.7 8.3 58 881-939 26-89 (124)
87 3asl_A E3 ubiquitin-protein li 50.3 12 0.0004 32.7 3.5 39 124-171 30-68 (70)
88 2ytc_A PRE-mRNA-splicing facto 48.3 37 0.0013 29.0 6.5 54 890-943 25-79 (85)
89 3beg_B Splicing factor, argini 48.1 38 0.0013 31.3 7.0 46 890-936 29-75 (115)
90 2k16_A Transcription initiatio 47.8 8.6 0.00029 33.5 2.3 52 111-173 18-69 (75)
91 2lv9_A Histone-lysine N-methyl 47.5 11 0.00037 34.9 3.0 48 112-172 29-76 (98)
92 4gne_A Histone-lysine N-methyl 47.2 6.2 0.00021 37.4 1.3 44 111-170 15-60 (107)
93 2dgu_A Heterogeneous nuclear r 46.9 51 0.0017 29.5 7.4 52 890-943 24-75 (103)
94 2lbm_A Transcriptional regulat 45.4 13 0.00046 36.8 3.4 55 111-172 63-117 (142)
95 2e6s_A E3 ubiquitin-protein li 45.2 13 0.00045 33.0 3.0 49 113-171 28-76 (77)
96 1x4c_A Splicing factor, argini 44.8 50 0.0017 29.9 7.1 57 882-940 17-77 (108)
97 2cph_A RNA binding motif prote 44.7 27 0.00094 31.2 5.3 53 890-943 28-89 (107)
98 3zzy_A Polypyrimidine tract-bi 44.6 48 0.0016 32.2 7.2 59 881-940 29-94 (130)
99 3htk_C E3 SUMO-protein ligase 44.1 12 0.0004 40.9 3.0 51 109-174 179-231 (267)
100 1owx_A Lupus LA protein, SS-B, 44.1 42 0.0014 32.3 6.6 59 874-933 12-77 (121)
101 1ffk_W Ribosomal protein L37AE 43.6 9.4 0.00032 33.9 1.8 35 105-139 21-57 (73)
102 2lxi_A RNA-binding protein 10; 42.8 31 0.001 30.6 5.2 54 890-943 14-75 (91)
103 3bs9_A Nucleolysin TIA-1 isofo 42.7 65 0.0022 27.4 7.2 61 882-943 8-78 (87)
104 2dnz_A Probable RNA-binding pr 42.6 77 0.0026 27.5 7.8 60 883-943 8-77 (95)
105 2cqd_A RNA-binding region cont 41.9 43 0.0015 30.6 6.3 51 890-943 30-88 (116)
106 3t6p_A Baculoviral IAP repeat- 41.1 10 0.00036 42.7 2.2 42 111-174 295-337 (345)
107 2yho_A E3 ubiquitin-protein li 41.0 15 0.00053 32.3 2.8 42 111-174 18-60 (79)
108 2cpd_A Apobec-1 stimulating pr 40.4 65 0.0022 28.5 7.0 53 890-943 28-81 (99)
109 3jyw_9 60S ribosomal protein L 40.2 11 0.00039 33.3 1.8 33 105-137 20-54 (72)
110 3shb_A E3 ubiquitin-protein li 39.7 8.3 0.00028 34.4 0.9 39 124-171 38-76 (77)
111 2kwj_A Zinc finger protein DPF 38.9 3.2 0.00011 39.4 -2.1 50 114-170 4-59 (114)
112 2kre_A Ubiquitin conjugation f 38.9 74 0.0025 29.2 7.2 47 110-174 28-74 (100)
113 2dgo_A Cytotoxic granule-assoc 38.7 59 0.002 29.5 6.6 62 881-943 16-87 (115)
114 1x5u_A Splicing factor 3B subu 38.6 93 0.0032 27.6 7.8 59 883-943 18-87 (105)
115 2dnp_A RNA-binding protein 14; 38.5 57 0.002 28.3 6.2 52 890-943 22-73 (90)
116 2cqc_A Arginine/serine-rich sp 37.9 82 0.0028 27.3 7.2 52 890-943 28-87 (95)
117 3r27_A HnRNP L, heterogeneous 37.6 95 0.0032 28.7 7.8 72 871-943 12-89 (100)
118 4g6v_B CDII; tRNAse, toxin, im 37.1 21 0.00071 33.0 3.0 57 782-849 15-71 (111)
119 2jvr_A Nucleolar protein 3; RN 37.0 70 0.0024 29.8 6.9 64 881-945 29-100 (111)
120 1sjr_A Polypyrimidine tract-bi 36.7 49 0.0017 33.4 6.1 58 881-939 47-111 (164)
121 2dgp_A Bruno-like 4, RNA bindi 36.2 54 0.0019 29.2 5.8 48 890-938 26-81 (106)
122 2dgt_A RNA-binding protein 30; 36.2 1.1E+02 0.0037 26.6 7.7 59 883-943 13-74 (92)
123 1sjq_A Polypyrimidine tract-bi 36.0 1E+02 0.0034 28.7 7.7 61 882-943 18-84 (105)
124 2cqi_A Nucleolysin TIAR; RNA r 35.7 1.4E+02 0.0049 26.3 8.6 59 883-943 18-85 (103)
125 2khc_A Testis-specific RNP-typ 35.6 1.3E+02 0.0044 27.3 8.4 62 880-943 40-112 (118)
126 2xb1_A Pygopus homolog 2, B-ce 35.2 15 0.0005 34.5 1.8 57 111-173 3-62 (105)
127 2kwj_A Zinc finger protein DPF 34.7 14 0.00049 34.9 1.7 59 104-173 45-109 (114)
128 2cpz_A CUG triplet repeat RNA- 34.5 1.1E+02 0.0039 27.6 7.9 60 883-943 28-97 (115)
129 2yu4_A E3 SUMO-protein ligase 34.4 22 0.00075 32.2 2.8 52 110-172 6-59 (94)
130 1why_A Hypothetical protein ri 34.3 72 0.0025 28.0 6.3 47 890-937 30-78 (97)
131 1x5t_A Splicing factor 3B subu 34.1 93 0.0032 27.0 6.9 60 883-943 8-78 (96)
132 2l43_A N-teminal domain from h 33.8 6.9 0.00024 35.6 -0.6 53 110-174 24-77 (88)
133 1x4a_A Splicing factor, argini 33.6 94 0.0032 27.9 7.0 59 883-943 25-91 (109)
134 2fy1_A RNA-binding motif prote 33.5 89 0.003 28.8 7.0 60 883-943 10-78 (116)
135 3ex7_B RNA-binding protein 8A; 33.4 55 0.0019 30.3 5.5 60 882-943 24-94 (126)
136 2ri7_A Nucleosome-remodeling f 33.4 13 0.00044 37.4 1.2 54 110-173 7-60 (174)
137 1wen_A Inhibitor of growth fam 33.4 18 0.00061 31.7 1.9 47 112-173 17-66 (71)
138 3ulh_A THO complex subunit 4; 33.3 1.2E+02 0.0041 26.9 7.7 62 881-943 30-100 (107)
139 3lqh_A Histone-lysine N-methyl 33.2 8.3 0.00029 39.8 -0.3 58 109-173 1-64 (183)
140 4fxv_A ELAV-like protein 1; RN 32.6 94 0.0032 27.9 6.8 59 883-943 22-91 (99)
141 3mdf_A Peptidyl-prolyl CIS-tra 32.6 1.2E+02 0.004 25.7 7.2 59 883-943 10-79 (85)
142 1whw_A Hypothetical protein ri 32.2 94 0.0032 27.2 6.7 59 883-943 11-80 (99)
143 2dnq_A RNA-binding protein 4B; 32.2 72 0.0025 27.6 5.8 52 890-943 21-72 (90)
144 2ku3_A Bromodomain-containing 32.0 13 0.00043 32.6 0.7 51 110-172 15-66 (71)
145 1x5s_A Cold-inducible RNA-bind 32.0 64 0.0022 28.5 5.6 52 890-943 25-84 (102)
146 2cqh_A IGF-II mRNA-binding pro 31.8 91 0.0031 27.0 6.5 54 890-943 21-75 (93)
147 2e5h_A Zinc finger CCHC-type a 31.7 94 0.0032 26.9 6.5 52 890-943 29-88 (94)
148 2dis_A Unnamed protein product 31.6 68 0.0023 28.7 5.7 54 890-943 21-84 (109)
149 3izc_m 60S ribosomal protein R 31.4 17 0.00058 33.6 1.5 33 105-137 30-64 (92)
150 1x4g_A Nucleolysin TIAR; struc 31.4 1.1E+02 0.0039 27.4 7.2 52 890-943 38-91 (109)
151 2dnm_A SRP46 splicing factor; 31.4 61 0.0021 28.8 5.3 59 883-943 16-85 (103)
152 1wgm_A Ubiquitin conjugation f 31.0 41 0.0014 30.8 4.1 47 110-174 21-68 (98)
153 2kr4_A Ubiquitin conjugation f 31.0 28 0.00095 31.0 2.8 47 110-174 13-59 (85)
154 2dgs_A DAZ-associated protein 30.8 1E+02 0.0035 27.1 6.7 51 890-943 23-81 (99)
155 2cq1_A PTB-like protein L; RRM 30.7 1.3E+02 0.0046 27.2 7.6 62 881-943 16-83 (101)
156 1x4b_A Heterogeneous nuclear r 30.2 1.2E+02 0.0042 27.4 7.3 62 883-946 30-102 (116)
157 2ysm_A Myeloid/lymphoid or mix 30.2 8.7 0.0003 36.0 -0.6 49 114-173 57-105 (111)
158 2cq0_A Eukaryotic translation 30.1 63 0.0021 28.7 5.1 59 883-943 18-87 (103)
159 3pgw_S U1-70K; protein-RNA com 29.9 1.2E+02 0.004 35.1 8.6 52 890-943 115-174 (437)
160 1wf1_A RNA-binding protein RAL 29.8 82 0.0028 28.4 6.0 52 890-943 41-92 (110)
161 3cc2_Z 50S ribosomal protein L 29.7 16 0.00056 35.0 1.1 35 105-139 54-90 (116)
162 2div_A TRNA selenocysteine ass 29.7 78 0.0027 27.8 5.7 47 890-936 22-76 (99)
163 2xnq_A Nuclear polyadenylated 29.7 1.1E+02 0.0038 27.1 6.8 52 890-943 36-87 (97)
164 1u6f_A Tcubp1, RNA-binding pro 29.3 1.8E+02 0.0061 27.2 8.5 59 883-943 45-114 (139)
165 2ro1_A Transcription intermedi 29.1 14 0.00049 38.0 0.7 46 113-172 4-49 (189)
166 1h2v_Z 20 kDa nuclear CAP bind 28.7 1E+02 0.0034 29.7 6.7 59 883-943 42-111 (156)
167 2e44_A Insulin-like growth fac 28.5 1.4E+02 0.0049 25.9 7.2 48 890-937 28-79 (96)
168 2cq3_A RNA-binding protein 9; 28.3 1.9E+02 0.0064 25.5 8.0 52 890-943 28-85 (103)
169 2fc8_A NCL protein; structure 28.2 1.5E+02 0.0051 26.1 7.3 29 914-943 56-84 (102)
170 2kt5_A RNA and export factor-b 27.9 1.4E+02 0.0048 27.4 7.3 63 879-943 34-106 (124)
171 3lns_A Benzaldehyde dehydrogen 27.9 1.8E+02 0.0063 33.5 9.8 56 867-938 356-412 (457)
172 2dh8_A DAZ-associated protein 27.8 84 0.0029 27.9 5.6 52 890-943 29-87 (105)
173 3s8s_A Histone-lysine N-methyl 27.8 1.1E+02 0.0036 28.2 6.4 52 890-943 19-78 (110)
174 1x4d_A Matrin 3; structural ge 27.7 1.1E+02 0.0038 28.0 6.5 65 878-943 13-84 (102)
175 2dnh_A Bruno-like 5, RNA bindi 27.7 1E+02 0.0036 27.2 6.2 56 883-938 18-82 (105)
176 1x4h_A RNA-binding protein 28; 27.7 1.2E+02 0.004 27.2 6.6 53 890-943 28-93 (111)
177 2ku7_A MLL1 PHD3-CYP33 RRM chi 27.6 1.1E+02 0.0039 28.4 6.7 59 883-943 66-135 (140)
178 4a8x_A RNA-binding protein wit 27.3 94 0.0032 26.4 5.6 52 890-943 17-77 (88)
179 3lqv_A PRE-mRNA branch site pr 27.0 1.1E+02 0.0036 27.8 6.2 52 890-943 21-77 (115)
180 2kvi_A Nuclear polyadenylated 26.7 1.2E+02 0.004 26.7 6.3 48 890-938 24-71 (96)
181 2ywk_A Putative RNA-binding pr 26.6 1.4E+02 0.0049 25.7 6.8 59 883-943 19-87 (95)
182 2jvo_A Nucleolar protein 3; nu 26.5 1.3E+02 0.0046 27.2 6.8 60 882-943 33-95 (108)
183 2do4_A Squamous cell carcinoma 26.4 1.2E+02 0.0041 26.6 6.3 59 883-943 20-88 (100)
184 2x1f_A MRNA 3'-END-processing 26.4 1.3E+02 0.0044 26.3 6.5 53 890-943 15-74 (96)
185 3md1_A Nuclear and cytoplasmic 26.4 1.4E+02 0.0047 25.1 6.5 59 883-943 4-73 (83)
186 4a17_Y RPL37A, 60S ribosomal p 26.3 18 0.00063 34.0 0.8 33 105-137 30-64 (103)
187 3s7r_A Heterogeneous nuclear r 26.2 1.5E+02 0.0051 25.2 6.8 51 890-943 24-82 (87)
188 1we9_A PHD finger family prote 26.2 12 0.00042 31.5 -0.4 55 110-173 5-59 (64)
189 2f42_A STIP1 homology and U-bo 26.2 52 0.0018 33.7 4.2 48 110-174 105-152 (179)
190 2dhx_A Poly (ADP-ribose) polym 25.5 82 0.0028 29.7 5.0 31 901-931 36-66 (104)
191 2cpe_A RNA-binding protein EWS 25.4 1E+02 0.0035 27.7 5.8 59 883-943 18-95 (113)
192 1p27_B RNA-binding protein 8A; 25.2 1.3E+02 0.0046 26.5 6.5 53 883-936 26-89 (106)
193 3nmr_A Cugbp ELAV-like family 25.1 1.2E+02 0.0041 28.9 6.5 50 890-940 108-164 (175)
194 3p5t_L Cleavage and polyadenyl 25.0 80 0.0027 27.4 4.8 53 890-943 14-75 (90)
195 1oo0_B CG8781-PA, drosophila Y 24.9 1.3E+02 0.0043 27.0 6.3 59 883-943 29-98 (110)
196 2ki2_A SS-DNA binding protein 24.8 1.1E+02 0.0039 26.2 5.7 51 890-943 14-72 (90)
197 2cqb_A Peptidyl-prolyl CIS-tra 24.8 1.4E+02 0.0049 26.2 6.5 52 890-943 25-84 (102)
198 2e6r_A Jumonji/ARID domain-con 24.7 16 0.00054 33.5 0.0 50 112-172 17-66 (92)
199 2diu_A KIAA0430 protein; struc 24.6 1.2E+02 0.004 28.2 5.9 45 899-945 35-79 (96)
200 3n9u_C Cleavage and polyadenyl 24.5 1.4E+02 0.0048 29.2 6.9 60 883-943 58-129 (156)
201 2cqg_A TDP-43, TAR DNA-binding 24.4 1.8E+02 0.0062 25.6 7.2 51 890-943 28-85 (103)
202 1weu_A Inhibitor of growth fam 24.3 32 0.0011 31.7 2.0 47 112-173 37-86 (91)
203 1x4e_A RNA binding motif, sing 24.1 69 0.0024 27.3 4.1 53 883-936 8-71 (85)
204 3iz5_m 60S ribosomal protein L 23.9 27 0.00094 32.2 1.5 33 105-137 30-64 (92)
205 2dhg_A TRNA selenocysteine ass 23.8 1.6E+02 0.0054 26.0 6.6 52 890-941 22-80 (104)
206 2cpf_A RNA binding motif prote 23.7 1.2E+02 0.0042 26.4 5.8 52 890-943 18-80 (98)
207 2ope_A PILX; type IV pilin, mi 23.6 36 0.0012 33.0 2.2 60 769-849 23-83 (128)
208 3pgw_A U1-A; protein-RNA compl 23.4 1.2E+02 0.0042 31.7 6.7 63 881-943 208-275 (282)
209 2cpi_A CCR4-NOT transcription 23.4 1.9E+02 0.0065 26.1 7.2 55 890-946 28-97 (111)
210 2cq4_A RNA binding motif prote 23.2 1.7E+02 0.0058 26.4 6.8 51 890-943 38-96 (114)
211 2dgv_A HnRNP M, heterogeneous 23.1 2E+02 0.0069 24.6 7.1 60 882-943 10-78 (92)
212 3j21_i 50S ribosomal protein L 23.0 29 0.00099 31.5 1.4 33 105-137 29-63 (83)
213 2lkz_A RNA-binding protein 5; 23.0 1E+02 0.0036 27.6 5.2 54 890-943 22-87 (95)
214 3sza_A Aldehyde dehydrogenase, 22.7 2.9E+02 0.0098 32.1 10.2 55 867-938 348-403 (469)
215 2do0_A HnRNP M, heterogeneous 22.6 2.7E+02 0.0093 24.8 8.1 52 890-943 28-86 (114)
216 2dng_A Eukaryotic translation 22.1 1.8E+02 0.0061 25.7 6.6 60 881-943 16-85 (103)
217 6rxn_A Rubredoxin; electron tr 22.0 37 0.0013 27.4 1.7 37 126-173 3-40 (46)
218 2jrs_A RNA-binding protein 39; 21.6 2.2E+02 0.0075 25.7 7.3 61 881-943 27-98 (108)
219 1x5p_A Negative elongation fac 21.5 2.7E+02 0.0094 24.2 7.7 52 890-943 26-79 (97)
220 1wev_A Riken cDNA 1110020M19; 21.4 30 0.001 31.4 1.2 59 111-175 16-75 (88)
221 2ad9_A Polypyrimidine tract-bi 21.3 1.1E+02 0.0038 29.0 5.2 61 882-943 33-99 (119)
222 1rk8_A CG8781-PA, CG8781-PA pr 21.2 1.4E+02 0.0048 29.1 6.2 52 890-943 85-144 (165)
223 2la4_A Nuclear and cytoplasmic 21.2 1.4E+02 0.0047 26.3 5.6 53 890-943 40-93 (101)
224 2dnl_A Cytoplasmic polyadenyla 21.0 1.4E+02 0.0047 27.2 5.8 50 890-943 21-80 (114)
225 1uaw_A Mouse-musashi-1; RNP-ty 21.0 90 0.0031 25.8 4.1 51 890-942 13-70 (77)
226 2la6_A RNA-binding protein FUS 20.8 2.4E+02 0.0082 24.6 7.2 59 881-941 14-91 (99)
227 2fc9_A NCL protein; structure 20.8 1.5E+02 0.0051 26.1 5.8 59 883-943 18-83 (101)
228 1nu4_A U1A RNA binding domain; 20.6 2.6E+02 0.0088 24.1 7.3 52 890-943 21-81 (97)
229 4bbq_A Lysine-specific demethy 20.4 29 0.001 32.5 1.0 53 114-172 62-114 (117)
230 3c6w_A P28ING5, inhibitor of g 20.4 18 0.00063 30.4 -0.4 42 116-171 13-57 (59)
231 1x5o_A RNA binding motif, sing 20.4 1.3E+02 0.0044 27.1 5.3 54 883-937 28-91 (114)
232 2dnr_A Synaptojanin-1; RRM dom 20.3 3.1E+02 0.011 25.1 7.7 46 896-943 31-78 (91)
233 2cpj_A Non-POU domain-containi 20.2 1.8E+02 0.0063 25.4 6.3 52 890-943 28-81 (99)
No 1
>1whr_A Hypothetical KIAA1002 protein; R3H domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.68.7.1
Probab=99.29 E-value=1.2e-11 Score=120.66 Aligned_cols=86 Identities=14% Similarity=0.234 Sum_probs=76.1
Q ss_pred hhHHHHHHHHhC---hhHHHHHHHHHHHHHhccccCCccccceEecCCCChhhHHHHHHHHHHcCCceeecCCCCCceEE
Q 001378 765 VTELLADLYRRD---PKWVLSVEERCKFLVLGKNRGSTNALKVHVFCPMLKDKRDAVRLIAERWKLAVNPAGWEPKRFIV 841 (1090)
Q Consensus 765 yse~Ll~~~~~~---~~~~~~vE~~L~~fv~~~~~~~~~~~k~~~f~PM~~~kR~fIHeLAe~ygL~S~S~d~EP~R~Vv 841 (1090)
..++|++..++| ..|++++|+.|..||.+.. ...+.|+||++.+|.+||.||++|||.+. .|.+. |+|+
T Consensus 15 vd~~l~eaL~~~~rdR~~il~lE~~i~~Fi~d~~------~~~~ef~pmnSy~RllvHrvAe~ygL~h~-~d~~~-r~Vv 86 (124)
T 1whr_A 15 LHEFLVNTLKKNPRDRMMLLKLEQEILEFINDNN------NQFKKFPQMTSYHRMLLHRVAAYFGMDHN-VDQTG-KAVI 86 (124)
T ss_dssp HHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHCSS------CCEEECCCCCHHHHHHHHHHHHHHTCCEE-ECSSC-SSEE
T ss_pred cCHHHHHHHHcCHHHHHHHHHHHHHHHHHHhCCC------ccceECCCCCHHHHHHHHHHHHHhCcCcc-ccCCC-CEEE
Confidence 778888888754 4899999999999999874 45688999999999999999999999996 56665 9999
Q ss_pred EEeCCCCCCCccccccc
Q 001378 842 VHVTPKSKPPPRVIGVK 858 (1090)
Q Consensus 842 V~kt~~Sk~P~~lLs~~ 858 (1090)
|+||+.+++|.++|++.
T Consensus 87 V~Kt~~tr~P~~~lse~ 103 (124)
T 1whr_A 87 INKTSNTRIPEQRFSEH 103 (124)
T ss_dssp EECCTTCCCCSCCGGGT
T ss_pred EEeCCCCCCChHHHHHH
Confidence 99999999999999984
No 2
>2cpm_A Sperm-associated antigen 7; R3H domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.27 E-value=7.4e-12 Score=116.52 Aligned_cols=63 Identities=16% Similarity=0.187 Sum_probs=56.2
Q ss_pred hhHHHHHHHHHHHHHhccccCCccccc-eEecCCCChhhHHHHHHHHHHcCCceeecCCCCC-ceEEEEeCC
Q 001378 777 PKWVLSVEERCKFLVLGKNRGSTNALK-VHVFCPMLKDKRDAVRLIAERWKLAVNPAGWEPK-RFIVVHVTP 846 (1090)
Q Consensus 777 ~~~~~~vE~~L~~fv~~~~~~~~~~~k-~~~f~PM~~~kR~fIHeLAe~ygL~S~S~d~EP~-R~VvV~kt~ 846 (1090)
.+|++++|++|..||.+. .+ ++.|+||++.+|+|||+|++.|||.|+|+|.||+ |+|||+++.
T Consensus 10 ~~yR~~re~~L~~la~~~-------g~~~v~L~PM~~~eRriIH~~l~~~gl~S~S~Geep~~R~VvI~~~~ 74 (94)
T 2cpm_A 10 VEFRKRMEKEVSDFIQDS-------GQIKKKFQPMNKIERSILHDVVEVAGLTSFSFGEDDDCRYVMIFKKE 74 (94)
T ss_dssp HHHHHHHHHHHHHHHHCS-------SCCEEECCCCCSSHHHHHHHHHHHHTCEEEEECSSSSCCEEEEECST
T ss_pred HHHHHHHHHHHHHHHHhc-------CCCceEeCCCCHHHHHHHHHHHHHCCCEEEEecCCCCceEEEEEeCC
Confidence 467999999999999543 34 5999999999999999999999999999999998 999999764
No 3
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=98.69 E-value=5.2e-09 Score=111.50 Aligned_cols=69 Identities=13% Similarity=0.148 Sum_probs=63.2
Q ss_pred hHHHHHHHHHHHHHhccccCCccccceEecCCCChhhHHHHH-HHHHHcCCceeecCCCCCceEEEEeCC
Q 001378 778 KWVLSVEERCKFLVLGKNRGSTNALKVHVFCPMLKDKRDAVR-LIAERWKLAVNPAGWEPKRFIVVHVTP 846 (1090)
Q Consensus 778 ~~~~~vE~~L~~fv~~~~~~~~~~~k~~~f~PM~~~kR~fIH-eLAe~ygL~S~S~d~EP~R~VvV~kt~ 846 (1090)
+|++++|++|..|+...+.++..+.+.+.|+||++.+|++|| .|+++-++.|+|.|.||+|+|||+...
T Consensus 141 ~YR~rR~e~L~~lA~~~A~kV~~tg~~v~L~PM~~~ERriIH~al~~~~~V~T~SeGeep~R~VVI~~~~ 210 (225)
T 3gku_A 141 NYRERRKETLETLAKNIAYKVKRTKRSVSLEPMNPYERRIIHAALQNDKYVVTRSDGEEPFRHVIISLKR 210 (225)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHCSCEECCCCCHHHHHHHHHHTTTCSSEEEEEESSTTSCEEEEEECC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCEEEccCCCHHHHHHHHHHHccCCCcEEEEeecCCCeEEEEEEcC
Confidence 799999999999999887777777899999999999999999 667777999999999999999999875
No 4
>1msz_A DNA-binding protein smubp-2; R3H fold; NMR {Homo sapiens} SCOP: d.68.7.1
Probab=98.48 E-value=2e-07 Score=85.11 Aligned_cols=61 Identities=25% Similarity=0.196 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHhccccCCccccceEecCC-CChhhHHHHHHHHHHcCCceeecCCCCCceEEEEeCCCC
Q 001378 781 LSVEERCKFLVLGKNRGSTNALKVHVFCP-MLKDKRDAVRLIAERWKLAVNPAGWEPKRFIVVHVTPKS 848 (1090)
Q Consensus 781 ~~vE~~L~~fv~~~~~~~~~~~k~~~f~P-M~~~kR~fIHeLAe~ygL~S~S~d~EP~R~VvV~kt~~S 848 (1090)
..++..|..|+.+. ...+.|+| |++.+|++||+||+.|||.+.|.|....|+|+|+++..+
T Consensus 19 ~~i~~~l~~F~~~~-------~~~l~FP~sLs~~eR~~IH~lA~~~GL~h~S~G~G~~R~l~V~k~~~~ 80 (86)
T 1msz_A 19 DHFRAMIVEFMASK-------KMQLEFPPSLNSHDRLRVHQIAEEHGLRHDSSGEGKRRFITVSKRAGS 80 (86)
T ss_dssp HHHHHHHHHHHHHT-------CSEEEECTTCCSHHHHHHHHHHHHTTEEEEEECSSSCCEEEEEECC--
T ss_pred HHHHHHHHHHhcCC-------CcEEEcCCCCCHHHHHHHHHHHHHcCCCcceeeCCCCeEEEEEEeCCc
Confidence 34778888888442 45789988 899999999999999999999999999999999998665
No 5
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=97.61 E-value=3.9e-05 Score=63.13 Aligned_cols=51 Identities=24% Similarity=0.578 Sum_probs=42.9
Q ss_pred cCcceEeeecccccccCceeeCCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCCccc
Q 001378 109 KSKVECMICYDMVKRSAPIWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQSVQ 173 (1090)
Q Consensus 109 ~~~yeC~IC~~~i~~~~~vWsC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~~~ 173 (1090)
.+..+|.||++.+...+.+..-..|.++||..||.+|.+. ...||-|+...
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~--------------~~~CP~Cr~~~ 53 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS--------------HSTCPLCRLTV 53 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT--------------CCSCSSSCCCS
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc--------------CCcCcCCCCEe
Confidence 3568999999999988888777789999999999999864 24699998753
No 6
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=97.36 E-value=8.7e-05 Score=60.91 Aligned_cols=51 Identities=22% Similarity=0.578 Sum_probs=41.4
Q ss_pred cCcceEeeecccccccCceeeCCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCCccc
Q 001378 109 KSKVECMICYDMVKRSAPIWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQSVQ 173 (1090)
Q Consensus 109 ~~~yeC~IC~~~i~~~~~vWsC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~~~ 173 (1090)
.+.++|.||++.+........-..|-++||..||.+|.+. ...||-|+...
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--------------~~~CP~Cr~~~ 53 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE--------------GYRCPLCSGPS 53 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHH--------------TCCCTTSCCSS
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHc--------------CCcCCCCCCcC
Confidence 4678999999999776555566679999999999999874 26799998753
No 7
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.24 E-value=0.00017 Score=63.28 Aligned_cols=51 Identities=25% Similarity=0.623 Sum_probs=40.4
Q ss_pred cCcceEeeecccccccCceeeCCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCCcccc
Q 001378 109 KSKVECMICYDMVKRSAPIWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQSVQL 174 (1090)
Q Consensus 109 ~~~yeC~IC~~~i~~~~~vWsC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~~~~ 174 (1090)
.+..+|.||++.+.....+-.- .|.++||..||.+|.+. ...||-|+....
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l-~C~H~fh~~Ci~~w~~~--------------~~~CP~Cr~~~~ 71 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVL-PCNHEFHAKCVDKWLKA--------------NRTCPICRADSG 71 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEE-TTTEEEETTHHHHHHHH--------------CSSCTTTCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEE-CCCCHhHHHHHHHHHHc--------------CCcCcCcCCcCC
Confidence 3678999999999877654433 38999999999999864 247999997754
No 8
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.20 E-value=0.00022 Score=63.58 Aligned_cols=50 Identities=28% Similarity=0.655 Sum_probs=41.0
Q ss_pred CcceEeeecccccccCceeeCCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCCcccc
Q 001378 110 SKVECMICYDMVKRSAPIWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQSVQL 174 (1090)
Q Consensus 110 ~~yeC~IC~~~i~~~~~vWsC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~~~~ 174 (1090)
+..+|.||++.|.... .|..|.+.||..||.+|.+... .=.||.|+..-.
T Consensus 14 ~i~~C~IC~~~i~~g~---~C~~C~h~fH~~Ci~kWl~~~~------------~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQ---SCETCGIRMHLPCVAKYFQSNA------------EPRCPHCNDYWP 63 (74)
T ss_dssp SSCBCSSSCCBCSSSE---ECSSSCCEECHHHHHHHSTTCS------------SCCCTTTCSCCC
T ss_pred CCCcCcchhhHcccCC---ccCCCCchhhHHHHHHHHHhcC------------CCCCCCCcCcCC
Confidence 5679999999998533 6889999999999999998542 247999997754
No 9
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=97.07 E-value=0.00041 Score=59.68 Aligned_cols=51 Identities=24% Similarity=0.727 Sum_probs=39.4
Q ss_pred CcceEeeecccccccCceeeCCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCCccccC
Q 001378 110 SKVECMICYDMVKRSAPIWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQSVQLT 175 (1090)
Q Consensus 110 ~~yeC~IC~~~i~~~~~vWsC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~~~~~ 175 (1090)
..++|.||++.+.....+-.- .|.++||..||++|.+. ...||-|+.....
T Consensus 13 ~~~~C~IC~~~~~~~~~~~~~-~C~H~fc~~Ci~~~~~~--------------~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 13 TEEKCTICLSILEEGEDVRRL-PCMHLFHQVCVDQWLIT--------------NKKCPICRVDIEA 63 (69)
T ss_dssp CCCSBTTTTBCCCSSSCEEEC-TTSCEEEHHHHHHHHHH--------------CSBCTTTCSBSCS
T ss_pred CCCCCeeCCccccCCCcEEEe-CCCCHHHHHHHHHHHHc--------------CCCCcCcCccccC
Confidence 578999999998765554332 48999999999999875 2359999987543
No 10
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.04 E-value=0.00047 Score=60.10 Aligned_cols=51 Identities=27% Similarity=0.636 Sum_probs=39.9
Q ss_pred CcceEeeecccccccCceeeCCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCCccccC
Q 001378 110 SKVECMICYDMVKRSAPIWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQSVQLT 175 (1090)
Q Consensus 110 ~~yeC~IC~~~i~~~~~vWsC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~~~~~ 175 (1090)
..++|.||++.+.....+-.. .|.++||..||.+|.+. ...||-|+.....
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~-~C~H~f~~~Ci~~~~~~--------------~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 14 LHELCAVCLEDFKPRDELGIC-PCKHAFHRKCLIKWLEV--------------RKVCPLCNMPVLQ 64 (74)
T ss_dssp CSCBCSSSCCBCCSSSCEEEE-TTTEEEEHHHHHHHHHH--------------CSBCTTTCCBCSS
T ss_pred CCCCCcCCCcccCCCCcEEEc-CCCCEecHHHHHHHHHc--------------CCcCCCcCccccc
Confidence 467899999999876665433 38999999999999864 1379999987543
No 11
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.01 E-value=0.00046 Score=60.79 Aligned_cols=51 Identities=27% Similarity=0.614 Sum_probs=40.5
Q ss_pred CcceEeeecccccccCceeeCCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCCccccC
Q 001378 110 SKVECMICYDMVKRSAPIWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQSVQLT 175 (1090)
Q Consensus 110 ~~yeC~IC~~~i~~~~~vWsC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~~~~~ 175 (1090)
..++|.||++.+.....+..- .|-++||..||.+|.+. ...||-|+.....
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~-~C~H~fc~~Ci~~~~~~--------------~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 14 SGLECPVCKEDYALGESVRQL-PCNHLFHDSCIVPWLEQ--------------HDSCPVCRKSLTG 64 (78)
T ss_dssp SSCCCTTTTSCCCTTSCEEEC-TTSCEEETTTTHHHHTT--------------TCSCTTTCCCCCC
T ss_pred CCCCCeeCCccccCCCCEEEe-CCCCeecHHHHHHHHHc--------------CCcCcCcCCccCC
Confidence 578999999999876655332 38999999999999864 2479999988654
No 12
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=96.95 E-value=0.00023 Score=67.29 Aligned_cols=70 Identities=19% Similarity=0.486 Sum_probs=46.6
Q ss_pred hHHHHHHHHHhc-cCcceEeeecccccccC--------------ceeeCCCCceeechhHHHHHhcCCCCcchhhhccCC
Q 001378 97 PQLLQEIQDKLM-KSKVECMICYDMVKRSA--------------PIWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQG 161 (1090)
Q Consensus 97 ~~l~~~l~e~l~-~~~yeC~IC~~~i~~~~--------------~vWsC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~ 161 (1090)
.+++.++.+.+. ....+|.||++.+.... .+..-..|-|+||..||.+|...+.. .
T Consensus 10 ~~~i~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~---------~ 80 (114)
T 1v87_A 10 EQVIRKYTEELKVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNK---------D 80 (114)
T ss_dssp HHHHHHHEEECSSCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCC---------S
T ss_pred HHHHHHHHHhccCCCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccC---------C
Confidence 344444333332 24579999999985432 23334579999999999999964321 2
Q ss_pred CCCCCCCCCccccC
Q 001378 162 FNWRCPGCQSVQLT 175 (1090)
Q Consensus 162 ~~WrCP~C~~~~~~ 175 (1090)
..-.||-|+..+..
T Consensus 81 ~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 81 GSLQCPSCKTIYGE 94 (114)
T ss_dssp SCCBCTTTCCBSSS
T ss_pred CCCcCCCCCCccCC
Confidence 35689999988754
No 13
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=96.84 E-value=0.00078 Score=61.60 Aligned_cols=49 Identities=22% Similarity=0.604 Sum_probs=39.6
Q ss_pred CcceEeeecccccccCceeeCCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCCccc
Q 001378 110 SKVECMICYDMVKRSAPIWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQSVQ 173 (1090)
Q Consensus 110 ~~yeC~IC~~~i~~~~~vWsC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~~~ 173 (1090)
..++|.||++.+.....+-.-. |-++||..||.+|.+. .-.||-|+...
T Consensus 39 ~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~--------------~~~CP~Cr~~~ 87 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQK--------------SGTCPVCRCMF 87 (91)
T ss_dssp SCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTT--------------TCBCTTTCCBS
T ss_pred CCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHc--------------CCcCcCcCccC
Confidence 5789999999998776654444 8999999999999864 23799999764
No 14
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=96.83 E-value=0.00037 Score=58.58 Aligned_cols=54 Identities=20% Similarity=0.466 Sum_probs=41.2
Q ss_pred cCcceEeeeccccccc---CceeeCCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCCccccCC
Q 001378 109 KSKVECMICYDMVKRS---APIWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQSVQLTS 176 (1090)
Q Consensus 109 ~~~yeC~IC~~~i~~~---~~vWsC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~~~~~~ 176 (1090)
++.++|.||++.+... .....-..|-++||..||.+|.+. ...||-|+......
T Consensus 1 g~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--------------~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 1 GAMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--------------ANTCPTCRKKINHK 57 (64)
T ss_dssp CCCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH--------------CSBCTTTCCBCTTT
T ss_pred CCCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc--------------CCCCCCCCccCCcc
Confidence 3578999999998653 233344578999999999999874 24899999886543
No 15
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=96.80 E-value=0.00054 Score=59.01 Aligned_cols=54 Identities=20% Similarity=0.482 Sum_probs=42.3
Q ss_pred cCcceEeeeccccccc---CceeeCCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCCccccCC
Q 001378 109 KSKVECMICYDMVKRS---APIWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQSVQLTS 176 (1090)
Q Consensus 109 ~~~yeC~IC~~~i~~~---~~vWsC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~~~~~~ 176 (1090)
.+.++|.||++.+... ..+..-..|-++||..||.+|.+.. -.||-|+......
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--------------~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--------------NTCPTCRKKINHK 64 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC--------------SBCTTTCCBCCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC--------------CCCCCCCCccChh
Confidence 4678999999998653 4455556899999999999998742 3799999886543
No 16
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.58 E-value=0.00077 Score=57.50 Aligned_cols=51 Identities=22% Similarity=0.527 Sum_probs=39.6
Q ss_pred cCcceEeeeccccccc---CceeeCCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCCccc
Q 001378 109 KSKVECMICYDMVKRS---APIWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQSVQ 173 (1090)
Q Consensus 109 ~~~yeC~IC~~~i~~~---~~vWsC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~~~ 173 (1090)
...++|.||++.+... ...+.-..|-++||..||.+|.+. .-.||-|+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--------------~~~CP~Cr~~~ 66 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--------------ANTCPTCRKKI 66 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH--------------CSSCTTTCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc--------------CCCCCCCCCcc
Confidence 3678999999998654 334444578999999999999874 24799999764
No 17
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=96.53 E-value=0.00086 Score=67.57 Aligned_cols=57 Identities=7% Similarity=-0.005 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHHHHhccccCCccccceEecCCCChhhHHHHH-HHHHHcCCceeecCCCCCceEEEEeC
Q 001378 778 KWVLSVEERCKFLVLGKNRGSTNALKVHVFCPMLKDKRDAVR-LIAERWKLAVNPAGWEPKRFIVVHVT 845 (1090)
Q Consensus 778 ~~~~~vE~~L~~fv~~~~~~~~~~~k~~~f~PM~~~kR~fIH-eLAe~ygL~S~S~d~EP~R~VvV~kt 845 (1090)
+|++++|++|+.|+...+.++..+.+... +|| +|++|| .|+++-+ .||+|+|||..+
T Consensus 80 ~YRerReetL~~lA~~~A~kV~~tgk~v~-~p~---erriIH~aLq~~~~-------~eP~R~VvI~~~ 137 (152)
T 2pt7_G 80 TFLQNQEKVMDTQLQSVIMTVHEVGKGQM-KAP---DGVLTYIALKKLRK-------AFPNKYVSIKTN 137 (152)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTSCEEE-ECC---STTHHHHHHHHHHH-------HCTTSCEEEEEC
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHCCcCC-CCC---chHHHHHHHHhCcc-------cCCCcEEEEEec
Confidence 79999999999999988877777777877 776 569999 7777666 499999999665
No 18
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.36 E-value=0.0019 Score=58.15 Aligned_cols=54 Identities=20% Similarity=0.548 Sum_probs=40.1
Q ss_pred CcceEeeecccccccCceee---CCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCCccccC
Q 001378 110 SKVECMICYDMVKRSAPIWS---CSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQSVQLT 175 (1090)
Q Consensus 110 ~~yeC~IC~~~i~~~~~vWs---C~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~~~~~ 175 (1090)
..-+|.||+++.....++-. |....++||..||.+|.... ....||-|+..+..
T Consensus 14 ~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~------------~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSS------------DTRCCELCKYEFIM 70 (80)
T ss_dssp TSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHH------------CCSBCSSSCCBCCC
T ss_pred CCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhC------------CCCCCCCCCCeeec
Confidence 35689999998876555431 22335999999999999753 15789999998764
No 19
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.32 E-value=0.0027 Score=56.74 Aligned_cols=55 Identities=20% Similarity=0.356 Sum_probs=41.7
Q ss_pred CcceEeeecccccccCceeeCCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCCccccC
Q 001378 110 SKVECMICYDMVKRSAPIWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQSVQLT 175 (1090)
Q Consensus 110 ~~yeC~IC~~~i~~~~~vWsC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~~~~~ 175 (1090)
..++|.||++.+......-.=-.|-|+||..||.+|.+.. ....+||-|+.....
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~-----------~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 14 EVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASS-----------INGVRCPFCSKITRI 68 (88)
T ss_dssp SCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHC-----------SSCBCCTTTCCCBCC
T ss_pred CCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcC-----------CCCcCCCCCCCcccc
Confidence 5689999999998755311112699999999999999753 125789999987643
No 20
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.27 E-value=0.0022 Score=55.56 Aligned_cols=47 Identities=26% Similarity=0.533 Sum_probs=37.5
Q ss_pred CcceEeeecccccccCceeeCCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCCcccc
Q 001378 110 SKVECMICYDMVKRSAPIWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQSVQL 174 (1090)
Q Consensus 110 ~~yeC~IC~~~i~~~~~vWsC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~~~~ 174 (1090)
..++|.||++.+.. +|-. .|-|+||..||.+|.+. ...||-|+....
T Consensus 14 ~~~~C~IC~~~~~~--~~~~--~CgH~fC~~Ci~~~~~~--------------~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 14 TVPECAICLQTCVH--PVSL--PCKHVFCYLCVKGASWL--------------GKRCALCRQEIP 60 (71)
T ss_dssp SCCBCSSSSSBCSS--EEEE--TTTEEEEHHHHHHCTTC--------------SSBCSSSCCBCC
T ss_pred CCCCCccCCcccCC--CEEc--cCCCHHHHHHHHHHHHC--------------CCcCcCcCchhC
Confidence 56899999998854 3333 59999999999999864 258999998754
No 21
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=96.17 E-value=0.0021 Score=54.98 Aligned_cols=50 Identities=26% Similarity=0.576 Sum_probs=38.3
Q ss_pred ccCcceEeeecccccccCceeeCCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCCcccc
Q 001378 108 MKSKVECMICYDMVKRSAPIWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQSVQL 174 (1090)
Q Consensus 108 ~~~~yeC~IC~~~i~~~~~vWsC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~~~~ 174 (1090)
.....+|.||.+.+.....+ ..|-++||..||.+|.+. ...||-|+....
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~---~~C~H~fc~~Ci~~~~~~--------------~~~CP~Cr~~~~ 51 (68)
T 1chc_A 2 ATVAERCPICLEDPSNYSMA---LPCLHAFCYVCITRWIRQ--------------NPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCCCSSCCSCCCSCEEE---TTTTEEESTTHHHHHHHH--------------SCSTTTTCCCCC
T ss_pred CCCCCCCeeCCccccCCcEe---cCCCCeeHHHHHHHHHhC--------------cCcCcCCChhhH
Confidence 45678999999998643223 358899999999999863 247999997754
No 22
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.11 E-value=0.0047 Score=53.37 Aligned_cols=51 Identities=27% Similarity=0.632 Sum_probs=39.6
Q ss_pred CcceEeeecccccccCceeeCCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCCccccC
Q 001378 110 SKVECMICYDMVKRSAPIWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQSVQLT 175 (1090)
Q Consensus 110 ~~yeC~IC~~~i~~~~~vWsC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~~~~~ 175 (1090)
..++|.||++.+.. ++-. .|-|+||..||.+|.+.. ...-.||-|+.....
T Consensus 19 ~~~~C~IC~~~~~~--~~~~--~CgH~fC~~Ci~~~~~~~-----------~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 19 EEVICPICLDILQK--PVTI--DCGHNFCLKCITQIGETS-----------CGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCBCTTTCSBCSS--EEEC--TTCCEEEHHHHHHHCSSS-----------CSCCCCSSSCCCCCC
T ss_pred cCCEeccCCcccCC--eEEc--CCCChhhHHHHHHHHHcC-----------CCCCCCCCCCCcCCc
Confidence 46899999998873 3333 799999999999998742 235789999987643
No 23
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.11 E-value=0.002 Score=57.65 Aligned_cols=49 Identities=29% Similarity=0.585 Sum_probs=35.7
Q ss_pred ceEeeecccccc-----------cCceeeCCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCCcccc
Q 001378 112 VECMICYDMVKR-----------SAPIWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQSVQL 174 (1090)
Q Consensus 112 yeC~IC~~~i~~-----------~~~vWsC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~~~~ 174 (1090)
-+|.||++.+.. .+.+-.-..|-++||..||.+|.+.. -.||-|+....
T Consensus 16 ~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~--------------~~CP~CR~~~~ 75 (81)
T 2ecl_A 16 DTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN--------------NRCPLCQQDWV 75 (81)
T ss_dssp SCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC--------------CBCTTTCCBCC
T ss_pred CCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhC--------------CCCCCcCCCcc
Confidence 357777777754 33344444799999999999998752 27999998754
No 24
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.00 E-value=0.0049 Score=52.54 Aligned_cols=49 Identities=22% Similarity=0.456 Sum_probs=38.6
Q ss_pred CcceEeeecccccccCceeeCCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCCccccC
Q 001378 110 SKVECMICYDMVKRSAPIWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQSVQLT 175 (1090)
Q Consensus 110 ~~yeC~IC~~~i~~~~~vWsC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~~~~~ 175 (1090)
..++|.||.+.+.. ++- ..|-|+||..||.+|.... ...||-|+.....
T Consensus 14 ~~~~C~IC~~~~~~--p~~--~~CgH~fC~~Ci~~~~~~~-------------~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 14 DKYKCEKCHLVLCS--PKQ--TECGHRFCESCMAALLSSS-------------SPKCTACQESIVK 62 (66)
T ss_dssp CCEECTTTCCEESS--CCC--CSSSCCCCHHHHHHHHTTS-------------SCCCTTTCCCCCT
T ss_pred cCCCCCCCChHhcC--eeE--CCCCCHHHHHHHHHHHHhC-------------cCCCCCCCcCCCh
Confidence 46899999998863 444 4899999999999998621 4679999987543
No 25
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=95.74 E-value=0.0042 Score=54.43 Aligned_cols=55 Identities=22% Similarity=0.471 Sum_probs=41.7
Q ss_pred CcceEeeecccccccCceeeCCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCCccccC
Q 001378 110 SKVECMICYDMVKRSAPIWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQSVQLT 175 (1090)
Q Consensus 110 ~~yeC~IC~~~i~~~~~vWsC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~~~~~ 175 (1090)
..++|.||.+.+.. ++- -.|-|+|+..||.+|.+..... ....-.||-|+.....
T Consensus 11 ~~~~C~IC~~~~~~--p~~--l~CgH~fC~~Ci~~~~~~~~~~-------~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 11 EEVTCPICLELLTE--PLS--LDCGHSLCRACITVSNKEAVTS-------MGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCEETTTTEECSS--CCC--CSSSCCCCHHHHSCCCCCCSSS-------CCCCCCCSSSCCCCCS
T ss_pred cCCCCcCCCcccCC--eeE--CCCCCHHHHHHHHHHHHhcccC-------CCCCCcCCCCCCcCCH
Confidence 57899999998754 443 2699999999999999875321 1346789999988653
No 26
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.57 E-value=0.009 Score=49.15 Aligned_cols=45 Identities=27% Similarity=0.765 Sum_probs=34.3
Q ss_pred CcceEeeecccccccCceeeCCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCCC
Q 001378 110 SKVECMICYDMVKRSAPIWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGC 169 (1090)
Q Consensus 110 ~~yeC~IC~~~i~~~~~vWsC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C 169 (1090)
..++|.||.+.+.. ++. -.|-++||..||++|.+.. .....||-|
T Consensus 14 ~~~~C~IC~~~~~~--p~~--~~CgH~fC~~Ci~~~~~~~-----------~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKE--PVI--IECGHNFCKACITRWWEDL-----------ERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSS--CCC--CSSCCCCCHHHHHHHTTSS-----------CCSCCCSCC
T ss_pred cCCCCccCCcccCc--cEe--CCCCCccCHHHHHHHHHhc-----------CCCCCCCCC
Confidence 46899999999864 333 3699999999999997642 125678876
No 27
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.53 E-value=0.0071 Score=50.96 Aligned_cols=45 Identities=31% Similarity=0.728 Sum_probs=34.8
Q ss_pred CcceEeeecccccccCceeeCCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCCC
Q 001378 110 SKVECMICYDMVKRSAPIWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGC 169 (1090)
Q Consensus 110 ~~yeC~IC~~~i~~~~~vWsC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C 169 (1090)
..++|.||++.+.. ++-. .|-|+||..||++|.+.. ....+||-|
T Consensus 19 ~~~~C~IC~~~~~~--p~~~--~CgH~fC~~Ci~~~~~~~-----------~~~~~CP~C 63 (63)
T 2ysj_A 19 EEVICPICLDILQK--PVTI--DCGHNFCLKCITQIGETS-----------CGFFKCPLC 63 (63)
T ss_dssp CCCBCTTTCSBCSS--CEEC--TTSSEECHHHHHHHHHHC-----------SSCCCCSCC
T ss_pred cCCCCCcCCchhCC--eEEe--CCCCcchHHHHHHHHHcC-----------CCCCcCcCC
Confidence 46899999998873 4443 799999999999999842 125678876
No 28
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.50 E-value=0.0077 Score=52.26 Aligned_cols=49 Identities=27% Similarity=0.555 Sum_probs=38.1
Q ss_pred CcceEeeecccccccCceeeCCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCCccccC
Q 001378 110 SKVECMICYDMVKRSAPIWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQSVQLT 175 (1090)
Q Consensus 110 ~~yeC~IC~~~i~~~~~vWsC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~~~~~ 175 (1090)
..++|.||.+.+.. ++ .-..|-|+||..||.+|.+. .-.||-|+.....
T Consensus 14 ~~~~C~IC~~~~~~--p~-~~~~CgH~fC~~Ci~~~~~~--------------~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 14 PYILCSICKGYLID--AT-TITECLHTFCKSCIVRHFYY--------------SNRCPKCNIVVHQ 62 (72)
T ss_dssp GGGSCTTTSSCCSS--CE-ECSSSCCEECHHHHHHHHHH--------------CSSCTTTCCCCCS
T ss_pred CCCCCCCCChHHHC--cC-EECCCCCHHHHHHHHHHHHc--------------CCcCCCcCcccCc
Confidence 36799999998865 22 22468999999999999864 3579999987654
No 29
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.49 E-value=0.003 Score=54.34 Aligned_cols=46 Identities=33% Similarity=0.694 Sum_probs=37.2
Q ss_pred CcceEeeecccccccCceeeCCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCCcccc
Q 001378 110 SKVECMICYDMVKRSAPIWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQSVQL 174 (1090)
Q Consensus 110 ~~yeC~IC~~~i~~~~~vWsC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~~~~ 174 (1090)
..++|.||++.+.. .+- .|-|+||..||.+|... ...||-|+....
T Consensus 14 ~~~~C~IC~~~~~~--~~~---~CgH~fc~~Ci~~~~~~--------------~~~CP~Cr~~~~ 59 (70)
T 2ecn_A 14 DEEECCICMDGRAD--LIL---PCAHSFCQKCIDKWSDR--------------HRNCPICRLQMT 59 (70)
T ss_dssp CCCCCSSSCCSCCS--EEE---TTTEEECHHHHHHSSCC--------------CSSCHHHHHCTT
T ss_pred CCCCCeeCCcCccC--ccc---CCCCcccHHHHHHHHHC--------------cCcCCCcCCccc
Confidence 47899999999876 333 58899999999999873 467999987754
No 30
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=95.47 E-value=0.0056 Score=58.50 Aligned_cols=55 Identities=20% Similarity=0.469 Sum_probs=40.4
Q ss_pred hccCcceEeeeccccccc---CceeeCCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCCccccC
Q 001378 107 LMKSKVECMICYDMVKRS---APIWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQSVQLT 175 (1090)
Q Consensus 107 l~~~~yeC~IC~~~i~~~---~~vWsC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~~~~~ 175 (1090)
+..+.++|.||++.+... ...-.-..|-|+||..||.+|.+.. -.||-|+.....
T Consensus 3 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--------------~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 3 MGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--------------NTCPTCRKKINH 60 (133)
T ss_dssp --CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTC--------------SBCTTTCCBCTT
T ss_pred cCCCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhC--------------CCCCCCCCcCcc
Confidence 456889999999998653 2222223789999999999998752 389999988654
No 31
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.46 E-value=0.005 Score=54.39 Aligned_cols=54 Identities=20% Similarity=0.480 Sum_probs=40.7
Q ss_pred CcceEeeecccccccCceeeCCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCCccccC
Q 001378 110 SKVECMICYDMVKRSAPIWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQSVQLT 175 (1090)
Q Consensus 110 ~~yeC~IC~~~i~~~~~vWsC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~~~~~ 175 (1090)
..++|.||++.+.. ++-. .|.|+|+..||.+|.+.... ......||-|+.....
T Consensus 18 ~~~~C~IC~~~~~~--p~~~--~CgH~fC~~Ci~~~~~~~~~--------~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 18 EEVTCPICLELLTQ--PLSL--DCGHSFCQACLTANHKKSML--------DKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCTTTCSCCSS--CBCC--SSSCCBCTTHHHHHHHHHHH--------TTSCCCCTTTCCSSCS
T ss_pred CCCCCCCCCcccCC--ceeC--CCCCHHHHHHHHHHHHHhhc--------CCCCCcCCCCCCccCH
Confidence 46899999999864 3332 69999999999999876321 1236789999987653
No 32
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.39 E-value=0.0093 Score=52.88 Aligned_cols=47 Identities=28% Similarity=0.522 Sum_probs=37.9
Q ss_pred CcceEeeecccccccCceeeCCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCCcccc
Q 001378 110 SKVECMICYDMVKRSAPIWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQSVQL 174 (1090)
Q Consensus 110 ~~yeC~IC~~~i~~~~~vWsC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~~~~ 174 (1090)
..++|.||.+.+.. ++- ..|-|+||..||.+|.+. ...||-|+....
T Consensus 14 ~~~~C~IC~~~~~~--p~~--~~CgH~fC~~Ci~~~~~~--------------~~~CP~Cr~~~~ 60 (81)
T 2csy_A 14 IPFRCFICRQAFQN--PVV--TKCRHYFCESCALEHFRA--------------TPRCYICDQPTG 60 (81)
T ss_dssp CCSBCSSSCSBCCS--EEE--CTTSCEEEHHHHHHHHHH--------------CSBCSSSCCBCC
T ss_pred CCCCCcCCCchhcC--eeE--ccCCCHhHHHHHHHHHHC--------------CCcCCCcCcccc
Confidence 46899999999843 553 479999999999999863 357999998753
No 33
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=95.38 E-value=0.016 Score=62.45 Aligned_cols=65 Identities=25% Similarity=0.519 Sum_probs=54.7
Q ss_pred ChhHHHHHHHHHhccCcceEeeecccccccCceeeCCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCCcccc
Q 001378 95 DLPQLLQEIQDKLMKSKVECMICYDMVKRSAPIWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQSVQL 174 (1090)
Q Consensus 95 ~~~~l~~~l~e~l~~~~yeC~IC~~~i~~~~~vWsC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~~~~ 174 (1090)
.+-+|.+.|.+.......+|.||.+-|... ..|++|-+.||..|+.+|.+.. ..-+||.|+..-.
T Consensus 164 ~l~El~~~l~~~~~~~i~~C~iC~~iv~~g---~~C~~C~~~~H~~C~~~~~~~~------------~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 164 AILEMEQYIRETYPDAVKICNICHSLLIQG---QSCETCGIRMHLPCVAKYFQSN------------AEPRCPHCNDYWP 228 (238)
T ss_dssp HHHHHHHHHHHHCTTTCCBCTTTCSBCSSC---EECSSSCCEECHHHHHHHTTTC------------SSCBCTTTCCBCC
T ss_pred cHHHHHHHHHHhcCCCCCcCcchhhHHhCC---cccCccChHHHHHHHHHHHHhC------------CCCCCCCCCCCCC
Confidence 367888899998887899999999999953 7899999999999999998753 2468999987643
No 34
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=95.31 E-value=0.013 Score=54.81 Aligned_cols=51 Identities=27% Similarity=0.575 Sum_probs=39.3
Q ss_pred CcceEeeecccccccCceeeCCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCCccccC
Q 001378 110 SKVECMICYDMVKRSAPIWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQSVQLT 175 (1090)
Q Consensus 110 ~~yeC~IC~~~i~~~~~vWsC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~~~~~ 175 (1090)
..++|.||.+.+. +++- ..|-|+|+..||.+|..... ....||-|+.....
T Consensus 20 ~~~~C~IC~~~~~--~p~~--~~CgH~fC~~Ci~~~~~~~~-----------~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 20 KILECPICLELIK--EPVS--TKCDHIFCKFCMLKLLNQKK-----------GPSQCPLCKNDITK 70 (112)
T ss_dssp HHTSCSSSCCCCS--SCCB--CTTSCCCCSHHHHHHHHSSS-----------SSCCCTTTSCCCCT
T ss_pred CCCCCcccChhhc--CeEE--CCCCCHHHHHHHHHHHHhCC-----------CCCCCcCCCCcCCH
Confidence 3579999999875 3443 26999999999999998642 25789999987543
No 35
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=95.23 E-value=0.012 Score=50.01 Aligned_cols=52 Identities=15% Similarity=0.305 Sum_probs=37.5
Q ss_pred CcceEeeecc-cccccCc-eeeCCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCCccccC
Q 001378 110 SKVECMICYD-MVKRSAP-IWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQSVQLT 175 (1090)
Q Consensus 110 ~~yeC~IC~~-~i~~~~~-vWsC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~~~~~ 175 (1090)
..++|.||.+ .+..... +-. ..|-|+|+..||.+|..+. ...||-|+.....
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~-~~CgH~fC~~Ci~~~~~~~-------------~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMV-NVCGHTLCESCVDLLFVRG-------------AGNCPECGTPLRK 55 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEE-CTTCCCEEHHHHHHHHHTT-------------SSSCTTTCCCCSS
T ss_pred CCCcCCcCCCCccCCCccCeec-CCCCCHhHHHHHHHHHHcC-------------CCcCCCCCCcccc
Confidence 3589999999 4443322 111 4699999999999997532 3589999988654
No 36
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=95.22 E-value=0.0098 Score=55.18 Aligned_cols=49 Identities=24% Similarity=0.754 Sum_probs=39.7
Q ss_pred cceEeeecccccccCceeeCCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCCccccC
Q 001378 111 KVECMICYDMVKRSAPIWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQSVQLT 175 (1090)
Q Consensus 111 ~yeC~IC~~~i~~~~~vWsC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~~~~~ 175 (1090)
.++|.||++.+.. .-.+..|-|+||..||.+|.+.. ...||-|+.....
T Consensus 22 ~~~C~IC~~~~~~---p~~~~~CgH~FC~~Ci~~~~~~~-------------~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 22 VFRCFICMEKLRD---ARLCPHCSKLCCFSCIRRWLTEQ-------------RAQCPHCRAPLQL 70 (100)
T ss_dssp HTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHHHT-------------CSBCTTTCCBCCG
T ss_pred CCCCccCCccccC---ccccCCCCChhhHHHHHHHHHHC-------------cCCCCCCCCcCCH
Confidence 5789999999863 34667899999999999998753 2689999988643
No 37
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=95.22 E-value=0.018 Score=53.92 Aligned_cols=57 Identities=26% Similarity=0.473 Sum_probs=47.7
Q ss_pred eEEEecCcccchhhhHHHHhhcCeeeEEEecCCceEEEecChhhHHHHHHhhcCcccc
Q 001378 881 LVVSFLDLPRESDISALVLRFGGECELVWLNDKNALAVFSDPARAATATRRLDHGSVY 938 (1090)
Q Consensus 881 ~~v~~~dl~~~~~i~~~~~~f~g~~el~wi~d~~~l~vF~~p~~~~~a~~~l~~~~~~ 938 (1090)
|.|+|...=+..||..+...|| -+.+.||||-.|+++|.+|.-|.+||..+...+.|
T Consensus 9 ~~l~FP~ewKt~Di~~lFs~fg-gv~I~WidDTsAlvvf~~~~~a~~al~~i~~~~~y 65 (101)
T 3ctr_A 9 LHVTFPKEWKTSDLYQLFSAFG-NIQISWIDDTSAFVSLSQPEQVKIAVNTSKYAESY 65 (101)
T ss_dssp EEEECCTTCCHHHHHHHTTTSE-EEEEEEEETTEEEEEEEEECHHHHHHHHHTTCSSC
T ss_pred EEEeCChhhhhHHHHHHHhccC-CEEEEEEcCCeEEEEecCHHHHHHHHHhcccCCce
Confidence 4556655556678888887785 88999999999999999999999999998877777
No 38
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=95.15 E-value=0.015 Score=54.29 Aligned_cols=58 Identities=26% Similarity=0.456 Sum_probs=49.0
Q ss_pred eEEEecCcccchhhhHHHHhhcCeeeEEEecCCceEEEecChhhHHHHHHhhcCccccc
Q 001378 881 LVVSFLDLPRESDISALVLRFGGECELVWLNDKNALAVFSDPARAATATRRLDHGSVYY 939 (1090)
Q Consensus 881 ~~v~~~dl~~~~~i~~~~~~f~g~~el~wi~d~~~l~vF~~p~~~~~a~~~l~~~~~~~ 939 (1090)
|.|+|...=+..||..+...|+ -+.+.||||-.|+++|.+|.-|.+||..+.....|.
T Consensus 19 f~l~FP~ewKt~DI~~lFs~fg-gv~I~WidDTsAlvvf~~~~~a~~al~~i~k~~~y~ 76 (100)
T 1whv_A 19 LHVTFPKEWKTSDLYQLFSAFG-NIQISWIDDTSAFVSLSQPEQVQIAVNTSKYAESYR 76 (100)
T ss_dssp EEEECCTTCCHHHHHHHHTTTC-SCCCEEEETTEEEEECSCHHHHHHHHHHHHHCCSSE
T ss_pred EEEeCChhhhhHHHHHHhhccC-CEEEEEEcCCeEEEEecCHHHHHHHHHhcccCCceE
Confidence 5566666656688888887885 889999999999999999999999999987777673
No 39
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=95.14 E-value=0.009 Score=52.71 Aligned_cols=54 Identities=24% Similarity=0.501 Sum_probs=40.9
Q ss_pred CcceEeeecccccccCceeeCCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCCccccC
Q 001378 110 SKVECMICYDMVKRSAPIWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQSVQLT 175 (1090)
Q Consensus 110 ~~yeC~IC~~~i~~~~~vWsC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~~~~~ 175 (1090)
..++|.||++.+.. ++- ..|-|+|+..||.+|...... ......||-|+.....
T Consensus 18 ~~~~C~IC~~~~~~--p~~--~~CgH~fC~~Ci~~~~~~~~~--------~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 18 EEVTCPICLELLKE--PVS--ADCNHSFCRACITLNYESNRN--------TDGKGNCPVCRVPYPF 71 (85)
T ss_dssp TTTSCTTTCSCCSS--CEE--CTTSCCBCHHHHHHHHHHSBC--------TTSCBCCTTTCCCCCT
T ss_pred cCCCCcCCChhhCc--cee--CCCCCHHHHHHHHHHHHhccC--------CCCCCCCCCCCCcCCH
Confidence 46799999998753 443 259999999999999986431 1347899999987643
No 40
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=95.08 E-value=0.016 Score=50.68 Aligned_cols=49 Identities=20% Similarity=0.540 Sum_probs=37.8
Q ss_pred CcceEeeecccccccCceeeCCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCCccc
Q 001378 110 SKVECMICYDMVKRSAPIWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQSVQ 173 (1090)
Q Consensus 110 ~~yeC~IC~~~i~~~~~vWsC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~~~ 173 (1090)
..++|.||.+.+.. +|- -..|-|+||..||.+|.+.. ....||-|+...
T Consensus 14 ~~~~C~IC~~~~~~--p~~-~~~CgH~fC~~Ci~~~~~~~------------~~~~CP~Cr~~~ 62 (74)
T 2yur_A 14 DELLCLICKDIMTD--AVV-IPCCGNSYCDECIRTALLES------------DEHTCPTCHQND 62 (74)
T ss_dssp GGGSCSSSCCCCTT--CEE-CSSSCCEECTTHHHHHHHHS------------SSSCCSSSCCSS
T ss_pred CCCCCcCCChHHhC--CeE-cCCCCCHHHHHHHHHHHHhc------------CCCcCCCCCCcC
Confidence 36799999998863 443 23499999999999999752 146899999864
No 41
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=94.97 E-value=0.02 Score=54.93 Aligned_cols=57 Identities=23% Similarity=0.575 Sum_probs=42.2
Q ss_pred hhHHHHHHHHHhccCcceEeeecccccccCceeeCCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCCcccc
Q 001378 96 LPQLLQEIQDKLMKSKVECMICYDMVKRSAPIWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQSVQL 174 (1090)
Q Consensus 96 ~~~l~~~l~e~l~~~~yeC~IC~~~i~~~~~vWsC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~~~~ 174 (1090)
+..+...|.+ .+.|.||.+.+. ++|-. .|-|+|+..||.+|.... ...||-|+....
T Consensus 42 ~~~~~~~~~~-----~~~C~IC~~~~~--~p~~~--~CgH~fC~~Ci~~~~~~~-------------~~~CP~Cr~~~~ 98 (124)
T 3fl2_A 42 FQLFLSKVEE-----TFQCICCQELVF--RPITT--VCQHNVCKDCLDRSFRAQ-------------VFSCPACRYDLG 98 (124)
T ss_dssp HHHHHHHHHH-----HTBCTTTSSBCS--SEEEC--TTSCEEEHHHHHHHHHTT-------------CCBCTTTCCBCC
T ss_pred HHHHHHhCcc-----CCCCCcCChHHc--CcEEe--eCCCcccHHHHHHHHhHC-------------cCCCCCCCccCC
Confidence 3344444444 368999999887 44443 799999999999999731 468999998764
No 42
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=94.85 E-value=0.018 Score=54.47 Aligned_cols=46 Identities=26% Similarity=0.676 Sum_probs=35.8
Q ss_pred ceEeeecccccccCc----------------eeeCCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCCccc
Q 001378 112 VECMICYDMVKRSAP----------------IWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQSVQ 173 (1090)
Q Consensus 112 yeC~IC~~~i~~~~~----------------vWsC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~~~ 173 (1090)
-+|.||.+.+..... ++ ..|-|+||+.||.+|.+. .-.||-|+...
T Consensus 38 d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~--~~C~H~FH~~Ci~~Wl~~--------------~~~CP~Cr~~~ 99 (106)
T 3dpl_R 38 DNCAICRNHIMDLCIECQANQASATSEECTVAW--GVCNHAFHFHCISRWLKT--------------RQVCPLDNREW 99 (106)
T ss_dssp CCCSSSCSCTTSCCTTHHHHTTCC---CCCEEE--ETTSCEEEHHHHHHHHTT--------------CSBCSSSCSBC
T ss_pred CCCccCChhHhCcCchhhccccccCCccceEee--cccCcEECHHHHHHHHHc--------------CCcCcCCCCcc
Confidence 469999999876522 22 269999999999999875 24699999874
No 43
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=94.77 E-value=0.0075 Score=57.61 Aligned_cols=54 Identities=20% Similarity=0.479 Sum_probs=41.9
Q ss_pred cCcceEeeeccccccc---CceeeCCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCCccccCC
Q 001378 109 KSKVECMICYDMVKRS---APIWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQSVQLTS 176 (1090)
Q Consensus 109 ~~~yeC~IC~~~i~~~---~~vWsC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~~~~~~ 176 (1090)
...++|.||.+.+... ..+.....|-++||..||.+|.+. ...||.|+......
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--------------~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--------------ANTCPTCRKKINHK 126 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH--------------CSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc--------------CCCCCCCCCcCChh
Confidence 5688999999988653 234445578999999999999864 35899999887643
No 44
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=94.74 E-value=0.03 Score=54.83 Aligned_cols=46 Identities=24% Similarity=0.679 Sum_probs=36.1
Q ss_pred cceEeeecccccccCceeeCCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCCcccc
Q 001378 111 KVECMICYDMVKRSAPIWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQSVQL 174 (1090)
Q Consensus 111 ~yeC~IC~~~i~~~~~vWsC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~~~~ 174 (1090)
.++|.||++.+. ++|-. .|.|+||..||.+|.+. .-.||-|+....
T Consensus 53 ~~~C~iC~~~~~--~~~~~--~CgH~fc~~Ci~~~~~~--------------~~~CP~Cr~~~~ 98 (138)
T 4ayc_A 53 ELQCIICSEYFI--EAVTL--NCAHSFCSYCINEWMKR--------------KIECPICRKDIK 98 (138)
T ss_dssp HSBCTTTCSBCS--SEEEE--TTSCEEEHHHHHHHTTT--------------CSBCTTTCCBCC
T ss_pred cCCCcccCcccC--CceEC--CCCCCccHHHHHHHHHc--------------CCcCCCCCCcCC
Confidence 468999999885 45543 59999999999999874 235999997653
No 45
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=94.24 E-value=0.038 Score=49.36 Aligned_cols=53 Identities=21% Similarity=0.483 Sum_probs=41.2
Q ss_pred CcceEeeecccccccC-ceeeCCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCCccccCC
Q 001378 110 SKVECMICYDMVKRSA-PIWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQSVQLTS 176 (1090)
Q Consensus 110 ~~yeC~IC~~~i~~~~-~vWsC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~~~~~~ 176 (1090)
..++|.||++.+...+ .+-.| .|-|.|...||.+|..+ ...+||.|+..+...
T Consensus 10 ~~~~CpICle~~~~~d~~~~p~-~CGH~fC~~Cl~~~~~~-------------~~~~CP~CR~~~~~~ 63 (78)
T 1e4u_A 10 DPVECPLCMEPLEIDDINFFPC-TCGYQICRFCWHRIRTD-------------ENGLCPACRKPYPED 63 (78)
T ss_dssp CCCBCTTTCCBCCTTTTTCCSS-TTSCCCCHHHHHHHTTS-------------SCSBCTTTCCBCSSC
T ss_pred cCCcCCccCccCcccccccccc-CCCCCcCHHHHHHHHhc-------------CCCCCCCCCCccCCC
Confidence 5689999999986543 34444 69999999999998653 157899999988653
No 46
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=94.10 E-value=0.02 Score=52.61 Aligned_cols=47 Identities=21% Similarity=0.556 Sum_probs=37.3
Q ss_pred cceEeeecccccccCceeeCCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCCcccc
Q 001378 111 KVECMICYDMVKRSAPIWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQSVQL 174 (1090)
Q Consensus 111 ~yeC~IC~~~i~~~~~vWsC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~~~~ 174 (1090)
.++|.||.+.+.. ++-. ..|-|+||..||.+|... .-.||-|+....
T Consensus 22 ~~~C~IC~~~~~~--p~~~-~~CgH~fC~~Ci~~~~~~--------------~~~CP~Cr~~~~ 68 (99)
T 2y43_A 22 LLRCGICFEYFNI--AMII-PQCSHNYCSLCIRKFLSY--------------KTQCPTCCVTVT 68 (99)
T ss_dssp HTBCTTTCSBCSS--EEEC-TTTCCEEEHHHHHHHHTT--------------CCBCTTTCCBCC
T ss_pred CCCcccCChhhCC--cCEE-CCCCCHhhHHHHHHHHHC--------------CCCCCCCCCcCC
Confidence 5789999998864 3322 468999999999999874 247999998754
No 47
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=93.80 E-value=0.019 Score=57.46 Aligned_cols=48 Identities=23% Similarity=0.630 Sum_probs=38.9
Q ss_pred cceEeeecccccccCceeeCCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCCccccC
Q 001378 111 KVECMICYDMVKRSAPIWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQSVQLT 175 (1090)
Q Consensus 111 ~yeC~IC~~~i~~~~~vWsC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~~~~~ 175 (1090)
.++|.||.+.+. ++|. ..|.++|+..||.+|.... ...||-|+.....
T Consensus 78 ~~~C~IC~~~~~--~pv~--~~CgH~fC~~Ci~~~~~~~-------------~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 78 SFMCVCCQELVY--QPVT--TECFHNVCKDCLQRSFKAQ-------------VFSCPACRHDLGQ 125 (150)
T ss_dssp HTBCTTTSSBCS--SEEE--CTTSCEEEHHHHHHHHHTT-------------CCBCTTTCCBCCT
T ss_pred CCEeecCChhhc--CCEE--cCCCCchhHHHHHHHHHhC-------------CCcCCCCCccCCC
Confidence 478999999875 4665 4899999999999999842 4579999988653
No 48
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=93.49 E-value=0.036 Score=47.21 Aligned_cols=53 Identities=23% Similarity=0.482 Sum_probs=37.5
Q ss_pred cCcceEeeecccccccCceee--CCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCCcccc
Q 001378 109 KSKVECMICYDMVKRSAPIWS--CSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQSVQL 174 (1090)
Q Consensus 109 ~~~yeC~IC~~~i~~~~~vWs--C~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~~~~ 174 (1090)
.+.-+|.||.++... .-|=- |...-..||..|+.+|...+ ..+.||-|+..|.
T Consensus 4 ~~~~~CrIC~~~~~~-~l~~PC~C~gs~~~~H~~Cl~~W~~~~------------~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELGN-ERFRACGCTGELENVHRSCLSTWLTIS------------RNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECSC-CCCCSCCCSSGGGSCCHHHHHHHHHHH------------TCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCCC-ceecCcCCCCchhhhHHHHHHHHHHhC------------CCCccCCCCCeee
Confidence 356789999987432 22333 33344599999999999742 2589999998874
No 49
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=93.45 E-value=0.04 Score=55.39 Aligned_cols=49 Identities=33% Similarity=0.715 Sum_probs=38.5
Q ss_pred CcceEeeecccccccCceeeCCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCCcccc
Q 001378 110 SKVECMICYDMVKRSAPIWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQSVQL 174 (1090)
Q Consensus 110 ~~yeC~IC~~~i~~~~~vWsC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~~~~ 174 (1090)
..++|.||.+.+.. +| ....|-|+||..||.+|.+.. ...||-|+....
T Consensus 53 ~~~~C~IC~~~~~~--p~-~~~~CgH~fC~~Ci~~~~~~~-------------~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 53 SELMCPICLDMLKN--TM-TTKECLHRFCADCIITALRSG-------------NKECPTCRKKLV 101 (165)
T ss_dssp HHHBCTTTSSBCSS--EE-EETTTCCEEEHHHHHHHHHTT-------------CCBCTTTCCBCC
T ss_pred CCCCCcccChHhhC--cC-EeCCCCChhHHHHHHHHHHhC-------------cCCCCCCCCcCC
Confidence 35899999999874 33 335799999999999998742 467999998753
No 50
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=93.24 E-value=0.016 Score=56.04 Aligned_cols=47 Identities=23% Similarity=0.553 Sum_probs=0.0
Q ss_pred eEeeecccccccCcee--------------eCCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCCccc
Q 001378 113 ECMICYDMVKRSAPIW--------------SCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQSVQ 173 (1090)
Q Consensus 113 eC~IC~~~i~~~~~vW--------------sC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~~~ 173 (1090)
.|.||.+.+.....+- .=..|-++||..||.+|.+.. -.||-|+...
T Consensus 50 ~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~--------------~~CP~Cr~~~ 110 (117)
T 4a0k_B 50 NCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR--------------QVCPLDNREW 110 (117)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred cCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcC--------------CcCCCCCCee
Confidence 6999999987532210 112699999999999998752 3599999874
No 51
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=92.96 E-value=0.066 Score=48.31 Aligned_cols=49 Identities=20% Similarity=0.540 Sum_probs=38.4
Q ss_pred CcceEeeecccccccCceeeCCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCCccc
Q 001378 110 SKVECMICYDMVKRSAPIWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQSVQ 173 (1090)
Q Consensus 110 ~~yeC~IC~~~i~~~~~vWsC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~~~ 173 (1090)
..+.|.||.+.+. ++|- -..|-|+|+..||.+|.... ....||-|+...
T Consensus 12 ~~~~C~IC~~~~~--~p~~-~~~CgH~fC~~Ci~~~~~~~------------~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 12 DELLCLICKDIMT--DAVV-IPCCGNSYCDECIRTALLES------------DEHTCPTCHQND 60 (92)
T ss_dssp TTTEETTTTEECS--SCEE-CTTTCCEECHHHHHHHHHHC------------TTCCCTTTCCSS
T ss_pred cCCCCCCCChhhc--CceE-CCCCCCHHHHHHHHHHHHhc------------CCCcCcCCCCcC
Confidence 4689999999886 4543 24499999999999998742 146899999875
No 52
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=92.83 E-value=0.077 Score=46.38 Aligned_cols=48 Identities=29% Similarity=0.518 Sum_probs=38.7
Q ss_pred CcceEeeecccccccCceeeCCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCCcccc
Q 001378 110 SKVECMICYDMVKRSAPIWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQSVQL 174 (1090)
Q Consensus 110 ~~yeC~IC~~~i~~~~~vWsC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~~~~ 174 (1090)
..+.|.||.+.+. ++|-. .|-++|+..||.+|.... ...||-|+....
T Consensus 7 ~~~~C~IC~~~~~--~Pv~~--~CgH~fc~~Ci~~~~~~~-------------~~~CP~C~~~~~ 54 (78)
T 1t1h_A 7 EYFRCPISLELMK--DPVIV--STGQTYERSSIQKWLDAG-------------HKTCPKSQETLL 54 (78)
T ss_dssp SSSSCTTTSCCCS--SEEEE--TTTEEEEHHHHHHHHTTT-------------CCBCTTTCCBCS
T ss_pred ccCCCCCcccccc--CCEEc--CCCCeecHHHHHHHHHHC-------------cCCCCCCcCCCC
Confidence 4789999999875 46654 699999999999999742 467999998754
No 53
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=92.25 E-value=0.089 Score=49.12 Aligned_cols=49 Identities=18% Similarity=0.502 Sum_probs=38.3
Q ss_pred CcceEeeecccccccCceeeCCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCCccccC
Q 001378 110 SKVECMICYDMVKRSAPIWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQSVQLT 175 (1090)
Q Consensus 110 ~~yeC~IC~~~i~~~~~vWsC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~~~~~ 175 (1090)
..++|.||.+.+.. +| .-..|-|+||..||.+|.... -.||-|+.....
T Consensus 14 ~~~~C~IC~~~~~~--p~-~~~~CgH~fC~~Ci~~~~~~~--------------~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 14 PHLMCVLCGGYFID--AT-TIIECLHSFCKTCIVRYLETS--------------KYCPICDVQVHK 62 (108)
T ss_dssp GGTBCTTTSSBCSS--EE-EETTTCCEEEHHHHHHHHTSC--------------SBCTTTCCBSCS
T ss_pred CcCCCccCChHHhC--cC-EeCCCCChhhHHHHHHHHHhC--------------CcCcCCCccccc
Confidence 47899999998853 33 234789999999999998752 579999987543
No 54
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=91.54 E-value=0.056 Score=51.02 Aligned_cols=47 Identities=19% Similarity=0.523 Sum_probs=37.7
Q ss_pred cceEeeecccccccCceeeCCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCCcccc
Q 001378 111 KVECMICYDMVKRSAPIWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQSVQL 174 (1090)
Q Consensus 111 ~yeC~IC~~~i~~~~~vWsC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~~~~ 174 (1090)
.++|.||++.+. .+|-. .|-|+|+..||.+|.... ...||-|+....
T Consensus 15 ~~~C~iC~~~~~--~p~~~--~CgH~fC~~Ci~~~~~~~-------------~~~CP~Cr~~~~ 61 (115)
T 3l11_A 15 ECQCGICMEILV--EPVTL--PCNHTLCKPCFQSTVEKA-------------SLCCPFCRRRVS 61 (115)
T ss_dssp HHBCTTTCSBCS--SCEEC--TTSCEECHHHHCCCCCTT-------------TSBCTTTCCBCH
T ss_pred CCCCccCCcccC--ceeEc--CCCCHHhHHHHHHHHhHC-------------cCCCCCCCcccC
Confidence 478999999886 35544 699999999999998642 468999998754
No 55
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=91.38 E-value=0.1 Score=49.31 Aligned_cols=48 Identities=25% Similarity=0.635 Sum_probs=38.2
Q ss_pred cceEeeecccccccCceeeCCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCCccccC
Q 001378 111 KVECMICYDMVKRSAPIWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQSVQLT 175 (1090)
Q Consensus 111 ~yeC~IC~~~i~~~~~vWsC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~~~~~ 175 (1090)
.++|.||.+.+. ++|- ..|-++|+..||.+|.... .-.||-|+.....
T Consensus 23 ~~~C~IC~~~~~--~p~~--~~CgH~fC~~Ci~~~~~~~-------------~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 23 SISCQICEHILA--DPVE--TSCKHLFCRICILRCLKVM-------------GSYCPSCRYPCFP 70 (116)
T ss_dssp HTBCTTTCSBCS--SEEE--CTTSCEEEHHHHHHHHHHT-------------CSBCTTTCCBCCG
T ss_pred CCCCCCCCcHhc--CcEE--cCCCCcccHHHHHHHHhHC-------------cCcCCCCCCCCCH
Confidence 588999999885 4555 3799999999999999752 2469999987543
No 56
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=91.27 E-value=0.081 Score=50.32 Aligned_cols=49 Identities=31% Similarity=0.566 Sum_probs=38.3
Q ss_pred CcceEeeecccccccCceeeCCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCCccccC
Q 001378 110 SKVECMICYDMVKRSAPIWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQSVQLT 175 (1090)
Q Consensus 110 ~~yeC~IC~~~i~~~~~vWsC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~~~~~ 175 (1090)
..++|.||.+.+.. +|-. .|-++|+..||.+|.+.. ...||-|+.....
T Consensus 17 ~~~~C~IC~~~~~~--p~~~--~CgH~fC~~Ci~~~~~~~-------------~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 17 SKYECPICLMALRE--AVQT--PCGHRFCKACIIKSIRDA-------------GHKCPVDNEILLE 65 (118)
T ss_dssp GGGBCTTTCSBCSS--EEEC--TTSCEEEHHHHHHHHHHH-------------CSBCTTTCCBCCG
T ss_pred CCCCCCcCChhhcC--eEEC--CcCChhhHHHHHHHHhhC-------------CCCCCCCCCCcCH
Confidence 46899999998863 4443 699999999999998753 2389999987543
No 57
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=90.21 E-value=0.074 Score=59.94 Aligned_cols=62 Identities=19% Similarity=0.489 Sum_probs=44.1
Q ss_pred CcceEeeecccccccCc--eeeCC--CCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCCcccc
Q 001378 110 SKVECMICYDMVKRSAP--IWSCS--SCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQSVQL 174 (1090)
Q Consensus 110 ~~yeC~IC~~~i~~~~~--vWsC~--~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~~~~ 174 (1090)
+.-||.||++.+..+.. .-.|. .|-+.||..|+.+|.+...+..++ -.-..-.||.|+....
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqS---Fnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTF---LEVSFGQCPFCKAKLS 372 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCT---TTCCEEECTTTCCEEE
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCcccc---ccccCCCCCCCCCcCC
Confidence 77899999999876443 45776 899999999999999854221100 0123467999997643
No 58
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=88.50 E-value=0.26 Score=42.84 Aligned_cols=48 Identities=25% Similarity=0.627 Sum_probs=35.3
Q ss_pred ceEeeecccccccCceeeCCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCCccc
Q 001378 112 VECMICYDMVKRSAPIWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQSVQ 173 (1090)
Q Consensus 112 yeC~IC~~~i~~~~~vWsC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~~~ 173 (1090)
.+|.||-+ ...+=-|..|-..||+.|+.-....- ....|.||.|....
T Consensus 13 ~~C~vC~~----~~~ll~Cd~C~~~~H~~Cl~P~l~~~----------P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 13 ARCGVCGD----GTDVLRCTHCAAAFHWRCHFPAGTSR----------PGTGLRCRSCSGDV 60 (66)
T ss_dssp CCCTTTSC----CTTCEECSSSCCEECHHHHCTTTCCC----------CSSSCCCTTTTTCC
T ss_pred CCcCCCCC----CCeEEECCCCCCceecccCCCccCcC----------CCCCEECccccCCC
Confidence 45999964 45688999999999999984333221 13579999998653
No 59
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=87.51 E-value=0.32 Score=46.06 Aligned_cols=46 Identities=22% Similarity=0.607 Sum_probs=35.3
Q ss_pred CcceEeeecccccccCceeeCCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCCcccc
Q 001378 110 SKVECMICYDMVKRSAPIWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQSVQL 174 (1090)
Q Consensus 110 ~~yeC~IC~~~i~~~~~vWsC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~~~~ 174 (1090)
..++|.||.+.+.. +|-. ..|-|+|+..||.+|.. ..||-|+....
T Consensus 21 ~~~~C~IC~~~~~~--pv~~-~~CgH~fC~~Ci~~~~~----------------~~CP~Cr~~~~ 66 (117)
T 1jm7_B 21 KLLRCSRCTNILRE--PVCL-GGCEHIFCSNCVSDCIG----------------TGCPVCYTPAW 66 (117)
T ss_dssp HTTSCSSSCSCCSS--CBCC-CSSSCCBCTTTGGGGTT----------------TBCSSSCCBCS
T ss_pred hCCCCCCCChHhhC--ccEe-CCCCCHHHHHHHHHHhc----------------CCCcCCCCcCc
Confidence 37899999998853 4332 15899999999999965 36999998753
No 60
>1ug8_A Poly(A)-specific ribonuclease; R3H domain, poly(A)-specific 3'-exoribonuclease, PARN, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.68.7.1
Probab=86.89 E-value=1.8 Score=39.58 Aligned_cols=62 Identities=13% Similarity=0.136 Sum_probs=46.8
Q ss_pred ChhHHHHHHHHHHHHHhccccCCccccceEecCCCChhhHHHHH-HHHHHcC--CceeecCCCCCceEEEE
Q 001378 776 DPKWVLSVEERCKFLVLGKNRGSTNALKVHVFCPMLKDKRDAVR-LIAERWK--LAVNPAGWEPKRFIVVH 843 (1090)
Q Consensus 776 ~~~~~~~vE~~L~~fv~~~~~~~~~~~k~~~f~PM~~~kR~fIH-eLAe~yg--L~S~S~d~EP~R~VvV~ 843 (1090)
+..|+..|.+++.+|+.+.. ...+.++|=|.++|++|. +|-..|. |..++...|=++.+++.
T Consensus 9 ~k~~id~i~~kIe~FL~s~~------~~~l~l~pCN~f~RkLIYQ~~~~kfp~~i~vet~~~e~~~~~ivv 73 (87)
T 1ug8_A 9 QKKFIDQVIEKIEDFLQSEE------KRSLELDPCTGFQRKLIYQTLSWKYPKGIHVETLETDKKERHIVI 73 (87)
T ss_dssp HHHHHHHHHHHHHHHHHCSS------CCEEECCCCCSHHHHHHHHHHHHHSSSSEEEEEECCSSSCSEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCC------CCceecCCchHHHHHHHHHHHHHhcCCceEEEEEecCCceEEEEE
Confidence 45678888889999998764 567899999999999999 6655664 77777777754444443
No 61
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=85.96 E-value=0.45 Score=41.52 Aligned_cols=54 Identities=24% Similarity=0.491 Sum_probs=39.5
Q ss_pred CChhHHHHHHHHHhccCcceEeeecccccccCceeeCCCCcee-echhHHHHHhcCCCCcchhhhccCCCCCCCCCCCcc
Q 001378 94 LDLPQLLQEIQDKLMKSKVECMICYDMVKRSAPIWSCSSCFSI-FHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQSV 172 (1090)
Q Consensus 94 ~~~~~l~~~l~e~l~~~~yeC~IC~~~i~~~~~vWsC~~C~~v-fHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~~ 172 (1090)
.++.+..+.|.++ .+|.||++... +.|.. .|-|+ |...||.+| ..||-|+..
T Consensus 12 ~~~~~~~~~~~~~-----~~C~iC~~~~~--~~~~~--pCgH~~~C~~C~~~~------------------~~CP~Cr~~ 64 (74)
T 4ic3_A 12 ISTEEQLRRLQEE-----KLCKICMDRNI--AIVFV--PCGHLVTCKQCAEAV------------------DKCPMCYTV 64 (74)
T ss_dssp CCHHHHHHHHHHH-----TBCTTTSSSBC--CEEEE--TTCCBCCCHHHHTTC------------------SBCTTTCCB
T ss_pred ccHHHHHhcCccC-----CCCCCCCCCCC--CEEEc--CCCChhHHHHhhhcC------------------ccCCCcCcC
Confidence 3455556666654 48999999764 34443 68898 999999888 479999987
Q ss_pred cc
Q 001378 173 QL 174 (1090)
Q Consensus 173 ~~ 174 (1090)
..
T Consensus 65 i~ 66 (74)
T 4ic3_A 65 IT 66 (74)
T ss_dssp CS
T ss_pred cc
Confidence 54
No 62
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=84.75 E-value=0.38 Score=43.74 Aligned_cols=57 Identities=18% Similarity=0.443 Sum_probs=41.7
Q ss_pred cCcceEeeecccccccCceeeCCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCC--CCcc
Q 001378 109 KSKVECMICYDMVKRSAPIWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPG--CQSV 172 (1090)
Q Consensus 109 ~~~yeC~IC~~~i~~~~~vWsC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~--C~~~ 172 (1090)
++.++|.||++.+.. ..+..-..|-|.|-..||+.+....... ......+||. |+..
T Consensus 3 ~~~~~C~IC~~~~~~-~~~~~l~~CgH~FC~~Cl~~~~~~~i~~------g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 3 SGSSGCKLCLGEYPV-EQMTTIAQCQCIFCTLCLKQYVELLIKE------GLETAISCPDAACPKQ 61 (94)
T ss_dssp CSBCCCSSSCCCCBG-GGEEEETTTTEEEEHHHHHHHHHHHHHH------CSCCCEECSCTTCSSC
T ss_pred CCCcCCcccCccccc-ccceEcCCCCCcccHHHHHHHHHHHhhc------CCcccccCccccCCCC
Confidence 467899999998753 3455555799999999999998854311 1123579999 9876
No 63
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=81.57 E-value=0.23 Score=49.08 Aligned_cols=47 Identities=17% Similarity=0.435 Sum_probs=37.0
Q ss_pred CcceEeeecccccccCceeeCCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCCccc
Q 001378 110 SKVECMICYDMVKRSAPIWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQSVQ 173 (1090)
Q Consensus 110 ~~yeC~IC~~~i~~~~~vWsC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~~~ 173 (1090)
..|+|.||.+.+..- |- ..|-++|+..||.+|.+.. ...||-|+...
T Consensus 30 ~~~~C~IC~~~~~~p--v~--~~CgH~FC~~Ci~~~~~~~-------------~~~CP~Cr~~~ 76 (141)
T 3knv_A 30 AKYLCSACRNVLRRP--FQ--AQCGHRYCSFCLASILSSG-------------PQNCAACVHEG 76 (141)
T ss_dssp GGGBCTTTCSBCSSE--EE--CTTSCEEEHHHHHHHGGGS-------------CEECHHHHHTT
T ss_pred cCcCCCCCChhhcCc--EE--CCCCCccCHHHHHHHHhcC-------------CCCCCCCCCcc
Confidence 578999999988643 43 3899999999999998632 35799998753
No 64
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=81.21 E-value=1.3 Score=50.89 Aligned_cols=52 Identities=21% Similarity=0.454 Sum_probs=39.1
Q ss_pred HhccCcceEeeecccccccCceeeCCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCCcccc
Q 001378 106 KLMKSKVECMICYDMVKRSAPIWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQSVQL 174 (1090)
Q Consensus 106 ~l~~~~yeC~IC~~~i~~~~~vWsC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~~~~ 174 (1090)
+......+|.||++.... ++- ..|-|+||..||..|.... .-.||-|+....
T Consensus 327 e~~~~~~~C~ICle~~~~--pv~--lpCGH~FC~~Ci~~wl~~~-------------~~~CP~CR~~i~ 378 (389)
T 2y1n_A 327 EMGSTFQLCKICAENDKD--VKI--EPCGHLMCTSCLTSWQESE-------------GQGCPFCRCEIK 378 (389)
T ss_dssp HTTTSSSBCTTTSSSBCC--EEE--ETTCCEECHHHHHHHHHHT-------------CSBCTTTCCBCC
T ss_pred hhcCCCCCCCccCcCCCC--eEE--eCCCChhhHHHHHHHHhcC-------------CCCCCCCCCccC
Confidence 344456899999998743 443 4799999999999998721 347999998754
No 65
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=79.21 E-value=0.83 Score=45.89 Aligned_cols=48 Identities=31% Similarity=0.564 Sum_probs=38.0
Q ss_pred CcceEeeecccccccCceeeCCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCCcccc
Q 001378 110 SKVECMICYDMVKRSAPIWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQSVQL 174 (1090)
Q Consensus 110 ~~yeC~IC~~~i~~~~~vWsC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~~~~ 174 (1090)
..|+|.||.+.+.. +|- + .|-++|...||.+|.+.+ ...||.|+....
T Consensus 17 ~~~~C~IC~~~~~~--pv~-~-~CgH~fC~~Ci~~~~~~~-------------~~~CP~Cr~~~~ 64 (170)
T 3hcs_A 17 SKYECPICLMALRE--AVQ-T-PCGHRFCKACIIKSIRDA-------------GHKCPVDNEILL 64 (170)
T ss_dssp GGGBCTTTCSBCSS--EEE-C-TTSCEEEHHHHHHHHHHH-------------CSBCTTTCCBCC
T ss_pred CCCCCCCCChhhcC--cEE-C-CCCCHHHHHHHHHHHHhC-------------CCCCCCCccCcc
Confidence 46899999998863 454 3 799999999999998742 238999987754
No 66
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=76.21 E-value=1.3 Score=37.58 Aligned_cols=52 Identities=13% Similarity=0.246 Sum_probs=37.1
Q ss_pred hccCcceEeeecccccccCceeeCCCCcee-echhHHHHHhcCCCCcchhhhccCCCCCCCCCCCcccc
Q 001378 107 LMKSKVECMICYDMVKRSAPIWSCSSCFSI-FHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQSVQL 174 (1090)
Q Consensus 107 l~~~~yeC~IC~~~i~~~~~vWsC~~C~~v-fHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~~~~ 174 (1090)
.++...+|.||++..+. .+.-=.-|-|+ |=..|+.+|.+. .+.||-|+....
T Consensus 3 ~~~~~~~C~IC~~~~~~--~~~~~~pCgH~~~C~~C~~~~~~~--------------~~~CPiCR~~i~ 55 (63)
T 2vje_B 3 CQNLLKPCSLCEKRPRD--GNIIHGRTGHLVTCFHCARRLKKA--------------GASCPICKKEIQ 55 (63)
T ss_dssp CGGGGSBCTTTSSSBSC--EEEEETTEEEEEECHHHHHHHHHT--------------TCBCTTTCCBCC
T ss_pred CCCcCCCCcccCCcCCC--eEEEecCCCCHhHHHHHHHHHHHh--------------CCcCCCcCchhh
Confidence 45567899999996533 22211357787 889999999753 479999998743
No 67
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=75.53 E-value=1.1 Score=38.06 Aligned_cols=48 Identities=23% Similarity=0.693 Sum_probs=34.6
Q ss_pred cceEeeecccccccCceeeCCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCCcc
Q 001378 111 KVECMICYDMVKRSAPIWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQSV 172 (1090)
Q Consensus 111 ~yeC~IC~~~i~~~~~vWsC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~~ 172 (1090)
...|.||-. ...+=-|..|-..||+.|+.-= ... .....|.||.|...
T Consensus 11 ~~~C~vC~~----~g~ll~CD~C~~~fH~~Cl~p~----l~~------~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 11 QDYCEVCQQ----GGEIILCDTCPRAYHMVCLDPD----MEK------APEGKWSCPHCEKE 58 (61)
T ss_dssp CSSCTTTSC----CSSEEECSSSSCEEEHHHHCTT----CCS------CCCSSCCCTTGGGG
T ss_pred CCCCccCCC----CCcEEECCCCChhhhhhccCCC----CCC------CCCCceECcccccc
Confidence 346888875 3578889999999999998531 110 12458999999753
No 68
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=75.12 E-value=1.4 Score=35.71 Aligned_cols=49 Identities=27% Similarity=0.750 Sum_probs=33.2
Q ss_pred eEeeecccccccCceeeCCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCCcc
Q 001378 113 ECMICYDMVKRSAPIWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQSV 172 (1090)
Q Consensus 113 eC~IC~~~i~~~~~vWsC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~~ 172 (1090)
.|.||-..- ....+=-|..|-..||+.|+.- +... .....|.||.|...
T Consensus 2 ~C~vC~~~~-~~~~ll~Cd~C~~~~H~~Cl~p----~l~~------~P~g~W~C~~C~~~ 50 (51)
T 1f62_A 2 RCKVCRKKG-EDDKLILCDECNKAFHLFCLRP----ALYE------VPDGEWQCPACQPA 50 (51)
T ss_dssp CCTTTCCSS-CCSCCEECTTTCCEECHHHHCT----TCCS------CCSSCCSCTTTSCC
T ss_pred CCCCCCCCC-CCCCEEECCCCChhhCcccCCC----CcCC------CCCCcEECcCcccc
Confidence 367776542 2456778999999999999842 1111 11358999999753
No 69
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=74.34 E-value=1 Score=37.00 Aligned_cols=45 Identities=22% Similarity=0.487 Sum_probs=33.9
Q ss_pred CcceEeeecccccccCceeeCCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCCccccC
Q 001378 110 SKVECMICYDMVKRSAPIWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQSVQLT 175 (1090)
Q Consensus 110 ~~yeC~IC~~~i~~~~~vWsC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~~~~~ 175 (1090)
..+.|.||.+.+.. ++- -.|-++|+..||.+| ...||-|+.....
T Consensus 5 ~~~~C~IC~~~~~~--p~~--l~CgH~fC~~Ci~~~-----------------~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 5 QFLRCQQCQAEAKC--PKL--LPCLHTLCSGCLEAS-----------------GMQCPICQAPWPL 49 (56)
T ss_dssp CCSSCSSSCSSCBC--CSC--STTSCCSBTTTCSSS-----------------SSSCSSCCSSSSC
T ss_pred cCCCceEeCCccCC--eEE--cCCCCcccHHHHccC-----------------CCCCCcCCcEeec
Confidence 56789999998764 332 358999999999763 3579999987543
No 70
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=71.87 E-value=3 Score=37.90 Aligned_cols=60 Identities=20% Similarity=0.616 Sum_probs=39.1
Q ss_pred eEeeecccccccCceeeCCCCceeechhHHHHHhcCCCCcchhh--hccCCCCCCCCCCCcccc
Q 001378 113 ECMICYDMVKRSAPIWSCSSCFSIFHLSCIKKWARAPTSADLSA--ERSQGFNWRCPGCQSVQL 174 (1090)
Q Consensus 113 eC~IC~~~i~~~~~vWsC~~C~~vfHL~CikkWa~~~~s~~~~~--~~~~~~~WrCP~C~~~~~ 174 (1090)
-|.|| ++-..+.+.-|..|-+|||..|.++=-.-....+..+ .......|-||.|.+...
T Consensus 17 ~C~VC--~~~t~~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~CenL~l 78 (89)
T 1wil_A 17 MCDVC--EVWTAESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDNINL 78 (89)
T ss_dssp CCTTT--CCCCSSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCCCCS
T ss_pred ccCcc--ccccccceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccchhhh
Confidence 36665 3445777889999999999999998633221111110 122367899999977643
No 71
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.26 E-value=5.1 Score=34.73 Aligned_cols=53 Identities=23% Similarity=0.466 Sum_probs=37.4
Q ss_pred ChhHHHHHHHHHhccCcceEeeecccccccCceeeCCCCcee-echhHHHHHhcCCCCcchhhhccCCCCCCCCCCCccc
Q 001378 95 DLPQLLQEIQDKLMKSKVECMICYDMVKRSAPIWSCSSCFSI-FHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQSVQ 173 (1090)
Q Consensus 95 ~~~~l~~~l~e~l~~~~yeC~IC~~~i~~~~~vWsC~~C~~v-fHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~~~ 173 (1090)
++.+..+++.+ .++|.||++.... +|. ..|-|+ |...|+++ ...||-|+...
T Consensus 14 ~~~~~~~~~~~-----~~~C~IC~~~~~~--~~~--~pCgH~~~C~~C~~~------------------~~~CP~Cr~~i 66 (75)
T 2ecg_A 14 STEEQLRRLQE-----EKLCKICMDRNIA--IVF--VPCGHLVTCKQCAEA------------------VDKCPMCYTVI 66 (75)
T ss_dssp CHHHHHHHHHH-----HHSCSSSCSSCCC--BCC--SSSCCCCBCHHHHHH------------------CSBCTTTCCBC
T ss_pred ChHHHHHcCCC-----CCCCCcCCCCCCC--EEE--ecCCCHHHHHHHhhC------------------CCCCccCCcee
Confidence 45555566655 4589999998643 443 368888 99999953 25799999875
Q ss_pred c
Q 001378 174 L 174 (1090)
Q Consensus 174 ~ 174 (1090)
.
T Consensus 67 ~ 67 (75)
T 2ecg_A 67 T 67 (75)
T ss_dssp C
T ss_pred c
Confidence 4
No 72
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=70.03 E-value=4.8 Score=47.74 Aligned_cols=60 Identities=25% Similarity=0.423 Sum_probs=48.9
Q ss_pred CceEEEecCcccchhhhHHHHhhcCeeeEEEecCCceEEEecChhhHHHHHHhhcCccccc
Q 001378 879 PRLVVSFLDLPRESDISALVLRFGGECELVWLNDKNALAVFSDPARAATATRRLDHGSVYY 939 (1090)
Q Consensus 879 ~~~~v~~~dl~~~~~i~~~~~~f~g~~el~wi~d~~~l~vF~~p~~~~~a~~~l~~~~~~~ 939 (1090)
..|.|++..--+..+|..+...|+ .+.+.||+|..++++|.++..+.++|+++...+.|+
T Consensus 441 ~vl~v~f~~~~~~~~i~~~fs~fg-~v~V~widdt~a~V~~~~~~~a~~~l~~~~~~~~~~ 500 (507)
T 3d45_A 441 HVLHVTFPKEWKTSDLYQLFSAFG-NIQISWIDDTSAFVSLSQPEQVQIAVNTSKYAESYR 500 (507)
T ss_dssp GEEEEECCTTCCHHHHHHHGGGGC-CCEEEECSSSEEEEECSCHHHHHHHHHHHTTCSSCE
T ss_pred cEEEEeCCCCCCHHHHHHHHHhcC-CEEEEEEcCCeEEEEECCHHHHHHHHHHHHhCCceE
Confidence 346677655445677888877785 789999999999999999999999999998777664
No 73
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=64.33 E-value=3.6 Score=34.84 Aligned_cols=49 Identities=22% Similarity=0.391 Sum_probs=35.1
Q ss_pred CcceEeeecccccccCceeeCCCCcee-echhHHHHHhcCCCCcchhhhccCCCCCCCCCCCcccc
Q 001378 110 SKVECMICYDMVKRSAPIWSCSSCFSI-FHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQSVQL 174 (1090)
Q Consensus 110 ~~yeC~IC~~~i~~~~~vWsC~~C~~v-fHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~~~~ 174 (1090)
...+|.||++..+.. +.-=.-|-|+ |=..|+.+|.+. .++||-|+....
T Consensus 7 ~~~~C~IC~~~~~~~--~~~~~pCgH~~~C~~C~~~~~~~--------------~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKNG--CIVHGKTGHLMACFTCAKKLKKR--------------NKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSCE--EEEETTEEEEEECHHHHHHHHHT--------------TCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCCE--EEECCCCCChhhHHHHHHHHHHc--------------CCcCCCcCcchh
Confidence 567899999975433 3211247888 558999999863 478999998743
No 74
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=63.78 E-value=1.3 Score=38.21 Aligned_cols=56 Identities=23% Similarity=0.494 Sum_probs=39.2
Q ss_pred cCcceEeeecccccccCceeeCC-CCceeechhHHHHHhcCCCCcchh--hhccCCCCCCCCCCC
Q 001378 109 KSKVECMICYDMVKRSAPIWSCS-SCFSIFHLSCIKKWARAPTSADLS--AERSQGFNWRCPGCQ 170 (1090)
Q Consensus 109 ~~~yeC~IC~~~i~~~~~vWsC~-~C~~vfHL~CikkWa~~~~s~~~~--~~~~~~~~WrCP~C~ 170 (1090)
...|.|.||-..+.....+=.|. .|-.-||..|| ..+.... -.+.....|.||.|.
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cv------glt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICT------GMTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHH------TCCHHHHHHHHHCTTEEECCHHHH
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhcc------CCCHHHHHHhhccCCCcEECcCcc
Confidence 35688999999999888888999 99999999998 2222110 011234589999884
No 75
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=63.47 E-value=2.5 Score=39.70 Aligned_cols=50 Identities=22% Similarity=0.612 Sum_probs=36.1
Q ss_pred CcceEeeecccccccCceeeCCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCC
Q 001378 110 SKVECMICYDMVKRSAPIWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQ 170 (1090)
Q Consensus 110 ~~yeC~IC~~~i~~~~~vWsC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~ 170 (1090)
+...|.||-+.-. -..+=.|..|...||+.|+.-+... .....|.||.|.
T Consensus 6 ~~~~C~~C~~~g~-~~~ll~C~~C~~~~H~~Cl~~~~~~----------~~~~~W~C~~C~ 55 (111)
T 2ysm_A 6 SGANCAVCDSPGD-LLDQFFCTTCGQHYHGMCLDIAVTP----------LKRAGWQCPECK 55 (111)
T ss_dssp CCSCBTTTCCCCC-TTTSEECSSSCCEECTTTTTCCCCT----------TTSTTCCCTTTC
T ss_pred CCCCCcCCCCCCC-CcCCeECCCCCCCcChHHhCCcccc----------ccccCccCCcCC
Confidence 5567999977632 2455789999999999999654321 124589999996
No 76
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=62.86 E-value=1.2 Score=38.32 Aligned_cols=51 Identities=29% Similarity=0.802 Sum_probs=36.7
Q ss_pred CcceEeeecccccccCceeeCCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCCcccc
Q 001378 110 SKVECMICYDMVKRSAPIWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQSVQL 174 (1090)
Q Consensus 110 ~~yeC~IC~~~i~~~~~vWsC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~~~~ 174 (1090)
+...|.||-+. ..+=-|..|-..||+.|+.- +... .....|.||.|.....
T Consensus 7 ~~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~p----pl~~------~P~g~W~C~~C~~~~~ 57 (66)
T 1xwh_A 7 NEDECAVCRDG----GELICCDGCPRAFHLACLSP----PLRE------IPSGTWRCSSCLQATV 57 (66)
T ss_dssp CCCSBSSSSCC----SSCEECSSCCCEECTTTSSS----CCSS------CCSSCCCCHHHHHTCC
T ss_pred CCCCCccCCCC----CCEEEcCCCChhhcccccCC----CcCc------CCCCCeECccccCccc
Confidence 45679999863 57889999999999999852 1111 1135899999986543
No 77
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=62.62 E-value=1.5 Score=41.50 Aligned_cols=52 Identities=27% Similarity=0.625 Sum_probs=35.5
Q ss_pred ceEeeecccc-----cccCceeeCCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCC
Q 001378 112 VECMICYDMV-----KRSAPIWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQ 170 (1090)
Q Consensus 112 yeC~IC~~~i-----~~~~~vWsC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~ 170 (1090)
-.|.||...- +....+=.|..|-..||+.|+.-+.... .......|.||.|+
T Consensus 6 ~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~-------~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 6 PICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELT-------VRVKALRWQCIECK 62 (112)
T ss_dssp SSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHH-------HHHHTSCCCCTTTC
T ss_pred ccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHH-------HHhhccccccccCC
Confidence 3588887653 3345789999999999999996432110 01124589999997
No 78
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=62.39 E-value=1.9 Score=36.67 Aligned_cols=48 Identities=27% Similarity=0.784 Sum_probs=34.4
Q ss_pred cceEeeecccccccCceeeCCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCCcc
Q 001378 111 KVECMICYDMVKRSAPIWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQSV 172 (1090)
Q Consensus 111 ~yeC~IC~~~i~~~~~vWsC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~~ 172 (1090)
...|.||-+ ...+=-|..|-..||+.|+.- +... .....|.||.|...
T Consensus 9 ~~~C~vC~~----~g~ll~Cd~C~~~fH~~Cl~p----pl~~------~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 9 MEFCRVCKD----GGELLCCDTCPSSYHIHCLNP----PLPE------IPNGEWLCPRCTCP 56 (61)
T ss_dssp CSSCTTTCC----CSSCBCCSSSCCCBCSSSSSS----CCSS------CCSSCCCCTTTTTT
T ss_pred CCcCCCCCC----CCCEEEcCCCCHHHcccccCC----CcCc------CCCCccCChhhcCc
Confidence 455889975 357888999999999999842 1111 11358999999865
No 79
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=61.85 E-value=3.9 Score=38.71 Aligned_cols=60 Identities=25% Similarity=0.570 Sum_probs=38.5
Q ss_pred HHHHHhccCcceEeee------cccccccCceeeCCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCCc
Q 001378 102 EIQDKLMKSKVECMIC------YDMVKRSAPIWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQS 171 (1090)
Q Consensus 102 ~l~e~l~~~~yeC~IC------~~~i~~~~~vWsC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~ 171 (1090)
.+.+.+..+...|+-| ...-.....+=-|..|-..||+.|+. -+... .....|.||.|+.
T Consensus 46 ~~~~~~~~~~W~C~~C~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~----p~l~~------~P~~~W~C~~C~~ 111 (112)
T 3v43_A 46 ELTVRVKALRWQCIECKTCSSCRDQGKNADNMLFCDSCDRGFHMECCD----PPLTR------MPKGMWICQICRP 111 (112)
T ss_dssp HHHHHHHTSCCCCTTTCCBTTTCCCCCTTCCCEECTTTCCEECGGGCS----SCCSS------CCSSCCCCTTTSC
T ss_pred HHHHHhhccccccccCCccccccCcCCCccceEEcCCCCCeeecccCC----CCCCC------CCCCCeECCCCCC
Confidence 3444556677766555 33323335788999999999999963 11111 1234899999973
No 80
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=60.41 E-value=1 Score=37.55 Aligned_cols=46 Identities=28% Similarity=0.818 Sum_probs=33.2
Q ss_pred cceEeeecccccccCceeeCCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCC
Q 001378 111 KVECMICYDMVKRSAPIWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQ 170 (1090)
Q Consensus 111 ~yeC~IC~~~i~~~~~vWsC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~ 170 (1090)
...|.||-.. ..+=-|..|-..||+.|+.- +... .....|.||.|.
T Consensus 9 ~~~C~vC~~~----g~ll~Cd~C~~~~H~~Cl~p----pl~~------~p~g~W~C~~C~ 54 (56)
T 2yql_A 9 EDFCSVCRKS----GQLLMCDTCSRVYHLDCLDP----PLKT------IPKGMWICPRCQ 54 (56)
T ss_dssp CCSCSSSCCS----SCCEECSSSSCEECSSSSSS----CCCS------CCCSSCCCHHHH
T ss_pred CCCCccCCCC----CeEEEcCCCCcceECccCCC----CcCC------CCCCceEChhhh
Confidence 4568999764 57888999999999999852 1111 113589999985
No 81
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=59.72 E-value=2.4 Score=43.31 Aligned_cols=47 Identities=26% Similarity=0.649 Sum_probs=33.5
Q ss_pred eEeeecccccccCceeeCCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCCccc
Q 001378 113 ECMICYDMVKRSAPIWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQSVQ 173 (1090)
Q Consensus 113 eC~IC~~~i~~~~~vWsC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~~~ 173 (1090)
.|.||.+. ..+=-|..|...||+.|+.--.. ......|.||.|+...
T Consensus 6 ~C~~C~~~----g~ll~Cd~C~~~~H~~C~~p~l~----------~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 6 WCAVCQNG----GELLCCEKCPKVFHLSCHVPTLT----------NFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCTTTCCC----SSCEECSSSSCEECTTTSSSCCS----------SCCSSCCCCTTTSCSS
T ss_pred ccccCCCC----CeeeecCCCCcccCccccCCCCC----------CCCCCCEECccccCcc
Confidence 48888743 55889999999999999632111 0124579999999764
No 82
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=56.05 E-value=1.8 Score=36.47 Aligned_cols=50 Identities=26% Similarity=0.738 Sum_probs=35.4
Q ss_pred CcceEeeecccccccCceeeCCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCCccc
Q 001378 110 SKVECMICYDMVKRSAPIWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQSVQ 173 (1090)
Q Consensus 110 ~~yeC~IC~~~i~~~~~vWsC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~~~ 173 (1090)
+...|.||-.. ..+=.|..|-..||+.|+.- +... .....|.||.|....
T Consensus 4 ~~~~C~vC~~~----g~ll~Cd~C~~~fH~~Cl~p----pl~~------~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 4 HEDFCSVCRKS----GQLLMCDTCSRVYHLDCLDP----PLKT------IPKGMWICPRCQDQM 53 (60)
T ss_dssp CCSSCTTTCCC----SSCEECSSSSCEECGGGSSS----CCSS------CCCSCCCCHHHHHHH
T ss_pred CCCCCcCCCCC----CcEEEcCCCCcCEECCcCCC----CcCC------CCCCceEChhccChh
Confidence 34568888763 57888999999999999852 1111 113589999997654
No 83
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=53.87 E-value=3.1 Score=43.38 Aligned_cols=48 Identities=23% Similarity=0.610 Sum_probs=34.1
Q ss_pred ceEeeecccccccCceeeCCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCCccc
Q 001378 112 VECMICYDMVKRSAPIWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQSVQ 173 (1090)
Q Consensus 112 yeC~IC~~~i~~~~~vWsC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~~~ 173 (1090)
-.|.||... ..+=-|..|...||+.|+.-.... .....|.||.|+...
T Consensus 8 ~~C~~C~~~----g~ll~Cd~C~~~~H~~Cl~p~l~~----------~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 8 DWCAVCQNG----GDLLCCEKCPKVFHLTCHVPTLLS----------FPSGDWICTFCRDIG 55 (207)
T ss_dssp SSBTTTCCC----EEEEECSSSSCEECTTTSSSCCSS----------CCSSCCCCTTTSCSS
T ss_pred CCCCCCCCC----CceEEcCCCCCccCCccCCCCCCC----------CCCCCEEeCceeCcc
Confidence 348888643 458889999999999997421111 124579999999764
No 84
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=53.76 E-value=6.9 Score=38.31 Aligned_cols=53 Identities=19% Similarity=0.472 Sum_probs=35.5
Q ss_pred eEeeecccccccCceeeCCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCCcc
Q 001378 113 ECMICYDMVKRSAPIWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQSV 172 (1090)
Q Consensus 113 eC~IC~~~i~~~~~vWsC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~~ 172 (1090)
.|-||.+. ..+--|..|.++||+.||..=.-..... ........|.|+-|+..
T Consensus 59 ~C~vC~dG----G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~---~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 59 QCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRRELS---TIMDENNQWYCYICHPE 111 (129)
T ss_dssp SCTTTCCC----SEEEECSSSSCEEEHHHHHHHTCHHHHH---HHTCTTSCCCCTTTCCG
T ss_pred cCeecCCC----CeeEecCCCchhhhHHHhCCCcchhHHH---HhccCCCCeEcCCcCCH
Confidence 49999864 5577899999999999998642111000 00012458999999754
No 85
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=53.50 E-value=5.4 Score=36.60 Aligned_cols=49 Identities=27% Similarity=0.648 Sum_probs=35.3
Q ss_pred CcceEeeecccccccCceeeCCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCCcc
Q 001378 110 SKVECMICYDMVKRSAPIWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQSV 172 (1090)
Q Consensus 110 ~~yeC~IC~~~i~~~~~vWsC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~~ 172 (1090)
....|.||-.. ..+=-|..|-.+||+.|+.- +... .....|.||.|...
T Consensus 24 n~~~C~vC~~~----g~LL~CD~C~~~fH~~Cl~P----pL~~------~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 24 SATICRVCQKP----GDLVMCNQCEFCFHLDCHLP----ALQD------VPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSCCSSSCSS----SCCEECTTSSCEECTTSSST----TCCC------CCSSSCCCCSCCCC
T ss_pred CCCcCcCcCCC----CCEEECCCCCCceecccCCC----CCCC------CcCCCcCCccccCC
Confidence 34579999864 46888999999999999731 2111 12458999999865
No 86
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=50.98 E-value=49 Score=31.72 Aligned_cols=58 Identities=16% Similarity=0.193 Sum_probs=39.5
Q ss_pred eEEEecCcccc---hhhhHHHHhhcCeeeEEEecC--C-ceEEEecChhhHHHHHHhhcCccccc
Q 001378 881 LVVSFLDLPRE---SDISALVLRFGGECELVWLND--K-NALAVFSDPARAATATRRLDHGSVYY 939 (1090)
Q Consensus 881 ~~v~~~dl~~~---~~i~~~~~~f~g~~el~wi~d--~-~~l~vF~~p~~~~~a~~~l~~~~~~~ 939 (1090)
+-|.+.+|.-. .+|..+..+| |+.+-++|-+ . .+.+.|.++.-|+.|++.|++.+.|-
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~y-G~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG~~i~g 89 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPV-GKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYA 89 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTT-SCEEEEEEEESSSEEEEEEESSHHHHHHHHHHHTTCCCBT
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhc-CCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEecC
Confidence 34556666433 3444444445 5665555542 3 37899999999999999999999884
No 87
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=50.31 E-value=12 Score=32.67 Aligned_cols=39 Identities=28% Similarity=0.768 Sum_probs=27.1
Q ss_pred cCceeeCCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCCc
Q 001378 124 SAPIWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQS 171 (1090)
Q Consensus 124 ~~~vWsC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~ 171 (1090)
...+=-|..|-..||+.|+. -+... ......|.||.|..
T Consensus 30 ~~~ll~CD~C~~~yH~~Cl~----Ppl~~-----~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 30 PDKQLMCDECDMAFHIYCLD----PPLSS-----VPSEDEWYCPECRN 68 (70)
T ss_dssp GGGEEECTTTCCEEEGGGSS----SCCSS-----CCSSSCCCCTTTSC
T ss_pred CCCEEEcCCCCCceecccCC----CCcCC-----CCCCCCcCCcCccC
Confidence 45678899999999999983 12211 11123899999975
No 88
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.31 E-value=37 Score=28.96 Aligned_cols=54 Identities=17% Similarity=0.226 Sum_probs=38.4
Q ss_pred cchhhhHHHHhhcCeeeEEEecC-CceEEEecChhhHHHHHHhhcCccccccEEE
Q 001378 890 RESDISALVLRFGGECELVWLND-KNALAVFSDPARAATATRRLDHGSVYYGAVV 943 (1090)
Q Consensus 890 ~~~~i~~~~~~f~g~~el~wi~d-~~~l~vF~~p~~~~~a~~~l~~~~~~~~~~~ 943 (1090)
.+.+|..+..+||.=-.+..+.+ .-+.+.|.++..|+.|++.|.++..+.|-.+
T Consensus 25 t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l 79 (85)
T 2ytc_A 25 TETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRL 79 (85)
T ss_dssp CHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTCEETTEEC
T ss_pred CHHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCeeECCCEE
Confidence 45667777777853334444554 3477889999999999999977777777655
No 89
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=48.15 E-value=38 Score=31.27 Aligned_cols=46 Identities=17% Similarity=0.193 Sum_probs=34.3
Q ss_pred cchhhhHHHHhhcCeeeEEEec-CCceEEEecChhhHHHHHHhhcCcc
Q 001378 890 RESDISALVLRFGGECELVWLN-DKNALAVFSDPARAATATRRLDHGS 936 (1090)
Q Consensus 890 ~~~~i~~~~~~f~g~~el~wi~-d~~~l~vF~~p~~~~~a~~~l~~~~ 936 (1090)
.+.+|..+..+|+ +.+-..|. |.-+.+.|.++..|+.||+.|++..
T Consensus 29 t~~~l~~~F~~~G-~v~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g~~ 75 (115)
T 3beg_B 29 SWQDLKDHMREAG-DVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTK 75 (115)
T ss_dssp CTTHHHHHHGGGS-CEEEEEECTTSEEEEEESSHHHHHHHHHHHTTCB
T ss_pred CHHHHHHHHHhcC-CeEEEEEecCCEEEEEECCHHHHHHHHHHhCCCE
Confidence 4566777776774 55544444 6778899999999999999997654
No 90
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=47.79 E-value=8.6 Score=33.54 Aligned_cols=52 Identities=23% Similarity=0.602 Sum_probs=35.3
Q ss_pred cceEeeecccccccCceeeCCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCCccc
Q 001378 111 KVECMICYDMVKRSAPIWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQSVQ 173 (1090)
Q Consensus 111 ~yeC~IC~~~i~~~~~vWsC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~~~ 173 (1090)
.+.|.||-..- ....+=.|..|-.-||+.|+.--.. ......|.||.|....
T Consensus 18 ~~~C~~C~~~~-~~~~mi~CD~C~~wfH~~Cv~~~~~----------~~~~~~w~C~~C~~~~ 69 (75)
T 2k16_A 18 IWICPGCNKPD-DGSPMIGCDDCDDWYHWPCVGIMAA----------PPEEMQWFCPKCANKI 69 (75)
T ss_dssp EECBTTTTBCC-SSCCEEECSSSSSEEEHHHHTCSSC----------CCSSSCCCCTTTHHHH
T ss_pred CcCCCCCCCCC-CCCCEEEcCCCCcccccccCCCCcc----------CCCCCCEEChhccCch
Confidence 34588886553 2345778999999999999842111 0113589999997654
No 91
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=47.51 E-value=11 Score=34.93 Aligned_cols=48 Identities=21% Similarity=0.465 Sum_probs=32.5
Q ss_pred ceEeeecccccccCceeeCCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCCcc
Q 001378 112 VECMICYDMVKRSAPIWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQSV 172 (1090)
Q Consensus 112 yeC~IC~~~i~~~~~vWsC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~~ 172 (1090)
..| ||-..- -...+--|..|-..||+.|+. .. .. .....|.||.|+..
T Consensus 29 vrC-iC~~~~-~~~~mi~Cd~C~~w~H~~C~~-----~~-~~-----~~p~~w~C~~C~~~ 76 (98)
T 2lv9_A 29 TRC-ICGFTH-DDGYMICCDKCSVWQHIDCMG-----ID-RQ-----HIPDTYLCERCQPR 76 (98)
T ss_dssp CCC-TTSCCS-CSSCEEEBTTTCBEEETTTTT-----CC-TT-----SCCSSBCCTTTSSS
T ss_pred EEe-ECCCcc-CCCcEEEcCCCCCcCcCcCCC-----CC-cc-----CCCCCEECCCCcCC
Confidence 347 775443 245788999999999999983 11 00 12347999999743
No 92
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=47.22 E-value=6.2 Score=37.38 Aligned_cols=44 Identities=27% Similarity=0.656 Sum_probs=31.8
Q ss_pred cceEeeecccccccCceeeCC--CCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCC
Q 001378 111 KVECMICYDMVKRSAPIWSCS--SCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQ 170 (1090)
Q Consensus 111 ~yeC~IC~~~i~~~~~vWsC~--~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~ 170 (1090)
...|.||-+ ...+=-|. .|..+||+.|+. .... ....|.||.|.
T Consensus 15 ~~~C~~C~~----~G~ll~CD~~~Cp~~fH~~Cl~---L~~~---------P~g~W~Cp~c~ 60 (107)
T 4gne_A 15 EDYCFQCGD----GGELVMCDKKDCPKAYHLLCLN---LTQP---------PYGKWECPWHQ 60 (107)
T ss_dssp CSSCTTTCC----CSEEEECCSTTCCCEECTGGGT---CSSC---------CSSCCCCGGGB
T ss_pred CCCCCcCCC----CCcEeEECCCCCCcccccccCc---CCcC---------CCCCEECCCCC
Confidence 345888873 35688899 899999999995 2111 14589999885
No 93
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=46.88 E-value=51 Score=29.46 Aligned_cols=52 Identities=19% Similarity=0.210 Sum_probs=37.9
Q ss_pred cchhhhHHHHhhcCeeeEEEecCCceEEEecChhhHHHHHHhhcCccccccEEE
Q 001378 890 RESDISALVLRFGGECELVWLNDKNALAVFSDPARAATATRRLDHGSVYYGAVV 943 (1090)
Q Consensus 890 ~~~~i~~~~~~f~g~~el~wi~d~~~l~vF~~p~~~~~a~~~l~~~~~~~~~~~ 943 (1090)
.+.+|..+..+|+ ..+-..|.-.-+.+.|.++.-|+.||+.|++.. +.|..+
T Consensus 24 t~~~l~~~F~~~G-~i~~v~~~~~~afV~f~~~~~a~~A~~~l~g~~-~~g~~l 75 (103)
T 2dgu_A 24 TEEILEKAFSQFG-KLERVKKLKDYAFIHFDERDGAVKAMEEMNGKD-LEGENI 75 (103)
T ss_dssp CHHHHHHHHHHHS-CEEEEEECSSCEEEEESSHHHHHHHHHHHTTEE-ETTEEE
T ss_pred CHHHHHHHHHhcC-CEEEEEEECCEEEEEeCCHHHHHHHHHHHCCCc-cCCCEE
Confidence 4566777777785 554444554578899999999999999998764 446655
No 94
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=45.42 E-value=13 Score=36.84 Aligned_cols=55 Identities=20% Similarity=0.455 Sum_probs=36.1
Q ss_pred cceEeeecccccccCceeeCCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCCcc
Q 001378 111 KVECMICYDMVKRSAPIWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQSV 172 (1090)
Q Consensus 111 ~yeC~IC~~~i~~~~~vWsC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~~ 172 (1090)
.-.|.||-+. -.+-.|..|.++||+.||..=...... .........|.||-|...
T Consensus 63 ~d~C~vC~~G----G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l---~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 63 DEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRKEL---STIMDENNQWYCYICHPE 117 (142)
T ss_dssp BCSCSSSCCC----SSEEECSSSCCEEEHHHHHHHTCHHHH---HHHHTSTTCCCCTTTCCC
T ss_pred CCeecccCCC----CcEEeCCCCCCeeeHhhcCCCCChhhh---hhcccCCCCCEeecccCc
Confidence 3468888763 458899999999999999653321100 000012458999999753
No 95
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.16 E-value=13 Score=33.01 Aligned_cols=49 Identities=22% Similarity=0.706 Sum_probs=31.6
Q ss_pred eEeeecccccccCceeeCCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCCc
Q 001378 113 ECMICYDMVKRSAPIWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQS 171 (1090)
Q Consensus 113 eC~IC~~~i~~~~~vWsC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~ 171 (1090)
.|.||-..- ....+=-|..|-..||+.|+. -+... ......|.||.|..
T Consensus 28 ~C~vC~~~~-~~~~ll~CD~C~~~yH~~Cl~----Ppl~~-----~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKH-EPNMQLLCDECNVAYHIYCLN----PPLDK-----VPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCC-CSTTEEECSSSCCEEETTSSS----SCCSS-----CCCSSCCCCTTTCC
T ss_pred CCcCcCCcC-CCCCEEEcCCCCccccccccC----CCccC-----CCCCCCcCCcCccC
Confidence 356665432 345677899999999999973 11211 11123799999964
No 96
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=44.79 E-value=50 Score=29.89 Aligned_cols=57 Identities=19% Similarity=0.236 Sum_probs=38.6
Q ss_pred EEEecCcc---cchhhhHHHHhhcCeeeEEE-ecCCceEEEecChhhHHHHHHhhcCcccccc
Q 001378 882 VVSFLDLP---RESDISALVLRFGGECELVW-LNDKNALAVFSDPARAATATRRLDHGSVYYG 940 (1090)
Q Consensus 882 ~v~~~dl~---~~~~i~~~~~~f~g~~el~w-i~d~~~l~vF~~p~~~~~a~~~l~~~~~~~~ 940 (1090)
-|.+.+|+ .+.+|..+..+|+ +.+-.. +.|.-+.+.|.++..|+.||+.|+... +.|
T Consensus 17 ~l~V~nLp~~~t~~~l~~~F~~~G-~i~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g~~-~~g 77 (108)
T 1x4c_A 17 RVVVSGLPPSGSWQDLKDHMREAG-DVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTK-FRS 77 (108)
T ss_dssp EEEEESCCSSCCHHHHHHHHGGGS-CEEEEEEETTTEEEEEESSHHHHHHHHHHSSSEE-EEC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcC-CEeEEEEecCCEEEEEECCHHHHHHHHHHHCcCC-ccC
Confidence 34444553 3456667766674 554334 447778899999999999999998654 445
No 97
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=44.71 E-value=27 Score=31.23 Aligned_cols=53 Identities=26% Similarity=0.343 Sum_probs=36.7
Q ss_pred cchhhhHHHHhhcCeeeEEEe-cCC--------ceEEEecChhhHHHHHHhhcCccccccEEE
Q 001378 890 RESDISALVLRFGGECELVWL-NDK--------NALAVFSDPARAATATRRLDHGSVYYGAVV 943 (1090)
Q Consensus 890 ~~~~i~~~~~~f~g~~el~wi-~d~--------~~l~vF~~p~~~~~a~~~l~~~~~~~~~~~ 943 (1090)
.+.+|..+..+|+ ..+-..| .|. -+.+.|.++..|+.||+.|.++..+.|..+
T Consensus 28 t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 28 NQREIRELFSTFG-ELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CHHHHHHHHHTTS-CEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred CHHHHHHHHHccC-CeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 4566777776775 5544444 352 477889999999999999965666656544
No 98
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=44.58 E-value=48 Score=32.18 Aligned_cols=59 Identities=22% Similarity=0.301 Sum_probs=40.4
Q ss_pred eEEEecCcccc---hhhhHHHHhhcCeeeEEEec-CC---ceEEEecChhhHHHHHHhhcCcccccc
Q 001378 881 LVVSFLDLPRE---SDISALVLRFGGECELVWLN-DK---NALAVFSDPARAATATRRLDHGSVYYG 940 (1090)
Q Consensus 881 ~~v~~~dl~~~---~~i~~~~~~f~g~~el~wi~-d~---~~l~vF~~p~~~~~a~~~l~~~~~~~~ 940 (1090)
+-|.+.+|.-. .+|..+-.+| |+..-++|- ++ .+.+.|.++.-|+.|++.|++.+.|-|
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~y-G~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~ 94 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKF-GTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNA 94 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTS-SCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETT
T ss_pred EEEEECCCCCCCCHHHHHHHHhCc-CCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCC
Confidence 44667777433 3444444455 566544544 32 278999999999999999999999953
No 99
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=44.11 E-value=12 Score=40.94 Aligned_cols=51 Identities=25% Similarity=0.498 Sum_probs=40.0
Q ss_pred cCcceEeeecccccccCceeeCCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCC--CCcccc
Q 001378 109 KSKVECMICYDMVKRSAPIWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPG--CQSVQL 174 (1090)
Q Consensus 109 ~~~yeC~IC~~~i~~~~~vWsC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~--C~~~~~ 174 (1090)
.-.+.|+||.+.+ .++|=+ ..|-|+|--.||.+|.... ..|.||- |+....
T Consensus 179 ~~el~CPIcl~~f--~DPVts-~~CGHsFcR~cI~~~~~~~------------~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 179 KIELTCPITCKPY--EAPLIS-RKCNHVFDRDGIQNYLQGY------------TTRDCPQAACSQVVS 231 (267)
T ss_dssp BCCSBCTTTSSBC--SSEEEE-SSSCCEEEHHHHHHHSTTC------------SCEECSGGGCSCEEC
T ss_pred ceeeECcCccCcc--cCCeee-CCCCCcccHHHHHHHHHhC------------CCCCCCcccccCcCc
Confidence 3578899999988 566643 4688999999999998742 2699997 997653
No 100
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=44.08 E-value=42 Score=32.32 Aligned_cols=59 Identities=14% Similarity=0.221 Sum_probs=39.5
Q ss_pred ccccCCceEEEecCcccc----hhhhHHHHhhcCeeeEEEec--CCceEEEecC-hhhHHHHHHhhc
Q 001378 874 LVDMDPRLVVSFLDLPRE----SDISALVLRFGGECELVWLN--DKNALAVFSD-PARAATATRRLD 933 (1090)
Q Consensus 874 ~v~~d~~~~v~~~dl~~~----~~i~~~~~~f~g~~el~wi~--d~~~l~vF~~-p~~~~~a~~~l~ 933 (1090)
-+.+.+...|.+.+|..+ .+|..+..+| |+...+|+. +.++-+.|.+ +..|++|++.|.
T Consensus 12 ~~~~~~G~il~v~~l~~~~~sredLke~F~~~-G~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln 77 (121)
T 1owx_A 12 SLEEKIGCLLKFSGDLDDQTCREDLHILFSNH-GEIKWIDFVRGAKEGIILFKEKAKEALGKAKDAN 77 (121)
T ss_dssp CCSCCCCCEEEEEESCCSSCCHHHHHHHTCSS-CCEEEEECCTTCSEEEEEESSCHHHHHHHHHHTT
T ss_pred cccccCCeEEEEecCCCCcCCHHHHHHHHHhc-CCEEEEEEecCCCEEEEEECCChHHHHHHHHHhh
Confidence 344556666777766544 3455555445 465566654 6678999999 678899999874
No 101
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=43.62 E-value=9.4 Score=33.86 Aligned_cols=35 Identities=29% Similarity=0.540 Sum_probs=27.0
Q ss_pred HHhccCcceEeeecc-cccccCc-eeeCCCCceeech
Q 001378 105 DKLMKSKVECMICYD-MVKRSAP-IWSCSSCFSIFHL 139 (1090)
Q Consensus 105 e~l~~~~yeC~IC~~-~i~~~~~-vWsC~~C~~vfHL 139 (1090)
|..+...|.|+.|-. .|+|..- ||.|..|-.+|--
T Consensus 21 e~~q~~ky~C~fCgk~~vkR~a~GIW~C~~C~~~~AG 57 (73)
T 1ffk_W 21 EIKHKKKYKCPVCGFPKLKRASTSIWVCGHCGYKIAG 57 (73)
T ss_pred HHhcccCccCCCCCCceeEEEEeEEEECCCCCcEEEC
Confidence 446778999999976 6766554 9999999877653
No 102
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=42.82 E-value=31 Score=30.56 Aligned_cols=54 Identities=22% Similarity=0.254 Sum_probs=39.8
Q ss_pred cchhhhHHHHhhcCeee-EEEecCCc-------eEEEecChhhHHHHHHhhcCccccccEEE
Q 001378 890 RESDISALVLRFGGECE-LVWLNDKN-------ALAVFSDPARAATATRRLDHGSVYYGAVV 943 (1090)
Q Consensus 890 ~~~~i~~~~~~f~g~~e-l~wi~d~~-------~l~vF~~p~~~~~a~~~l~~~~~~~~~~~ 943 (1090)
.+.+|..+..+||...+ +..+.|.. +-+.|.++.-|+.||+.+.++....|-.+
T Consensus 14 te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i 75 (91)
T 2lxi_A 14 TEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKV 75 (91)
T ss_dssp CHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEE
T ss_pred CHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEE
Confidence 45678888878864543 33344432 67889999999999999988877778766
No 103
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=42.65 E-value=65 Score=27.44 Aligned_cols=61 Identities=20% Similarity=0.175 Sum_probs=38.7
Q ss_pred EEEecCcc---cchhhhHHHHhhcCeeeEEEecCC-------ceEEEecChhhHHHHHHhhcCccccccEEE
Q 001378 882 VVSFLDLP---RESDISALVLRFGGECELVWLNDK-------NALAVFSDPARAATATRRLDHGSVYYGAVV 943 (1090)
Q Consensus 882 ~v~~~dl~---~~~~i~~~~~~f~g~~el~wi~d~-------~~l~vF~~p~~~~~a~~~l~~~~~~~~~~~ 943 (1090)
-|-+.+|+ .+.+|..+..+||.=-.+..+.|. -+.+.|.++..|+.||+.|++.. +.|-.+
T Consensus 8 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g~~l 78 (87)
T 3bs9_A 8 HVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQW-LGGRQI 78 (87)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCE-ETTEEC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCE-ECCeEE
Confidence 34455554 445666776667532234444443 47788999999999999998644 445544
No 104
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.61 E-value=77 Score=27.52 Aligned_cols=60 Identities=22% Similarity=0.256 Sum_probs=38.0
Q ss_pred EEecCcc---cchhhhHHHHhhcCeeeEEEecCC-------ceEEEecChhhHHHHHHhhcCccccccEEE
Q 001378 883 VSFLDLP---RESDISALVLRFGGECELVWLNDK-------NALAVFSDPARAATATRRLDHGSVYYGAVV 943 (1090)
Q Consensus 883 v~~~dl~---~~~~i~~~~~~f~g~~el~wi~d~-------~~l~vF~~p~~~~~a~~~l~~~~~~~~~~~ 943 (1090)
|.+.+|+ .+.+|..+..+|+.=-.+..+.|. -+.+.|.++..|+.||+.|++... .|..+
T Consensus 8 l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g~~l 77 (95)
T 2dnz_A 8 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFEL-AGRPM 77 (95)
T ss_dssp EEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCS-SSSCC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCee-CCcEE
Confidence 3344453 445666776667533244454453 477899999999999999876443 34444
No 105
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=41.88 E-value=43 Score=30.56 Aligned_cols=51 Identities=20% Similarity=0.332 Sum_probs=36.7
Q ss_pred cchhhhHHHHhhcCeee-EEEecCC-------ceEEEecChhhHHHHHHhhcCccccccEEE
Q 001378 890 RESDISALVLRFGGECE-LVWLNDK-------NALAVFSDPARAATATRRLDHGSVYYGAVV 943 (1090)
Q Consensus 890 ~~~~i~~~~~~f~g~~e-l~wi~d~-------~~l~vF~~p~~~~~a~~~l~~~~~~~~~~~ 943 (1090)
.+.+|..+..+|+ ..+ +.++.|. -+.+.|.++.-|+.||+.|++ .+.|-.+
T Consensus 30 t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~--~~~g~~l 88 (116)
T 2cqd_A 30 TDASLRKYFEGFG-DIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP--IIDGRKA 88 (116)
T ss_dssp CHHHHHHHHHTTS-CEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC--EETTEEC
T ss_pred CHHHHHHHHHhCC-CeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC--cCCCEEE
Confidence 4566777776775 443 4444453 377889999999999999985 6777766
No 106
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=41.09 E-value=10 Score=42.74 Aligned_cols=42 Identities=19% Similarity=0.571 Sum_probs=33.1
Q ss_pred cceEeeecccccccCceeeCCCCcee-echhHHHHHhcCCCCcchhhhccCCCCCCCCCCCcccc
Q 001378 111 KVECMICYDMVKRSAPIWSCSSCFSI-FHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQSVQL 174 (1090)
Q Consensus 111 ~yeC~IC~~~i~~~~~vWsC~~C~~v-fHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~~~~ 174 (1090)
..+|.||++... ++|-- -|-|+ |...||.+| +.||-|+....
T Consensus 295 ~~~C~IC~~~~~--~~v~l--pCgH~~fC~~C~~~~------------------~~CP~CR~~i~ 337 (345)
T 3t6p_A 295 ERTCKVCMDKEV--SVVFI--PCGHLVVCQECAPSL------------------RKCPICRGIIK 337 (345)
T ss_dssp TCBCTTTSSSBC--CEEEE--TTCCEEECTTTGGGC------------------SBCTTTCCBCC
T ss_pred CCCCCccCCcCC--ceEEc--CCCChhHhHHHHhcC------------------CcCCCCCCCcc
Confidence 579999999875 34443 58888 999999877 47999998754
No 107
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=41.02 E-value=15 Score=32.29 Aligned_cols=42 Identities=24% Similarity=0.511 Sum_probs=30.2
Q ss_pred cceEeeecccccccCceeeCCCCcee-echhHHHHHhcCCCCcchhhhccCCCCCCCCCCCcccc
Q 001378 111 KVECMICYDMVKRSAPIWSCSSCFSI-FHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQSVQL 174 (1090)
Q Consensus 111 ~yeC~IC~~~i~~~~~vWsC~~C~~v-fHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~~~~ 174 (1090)
..+|.||++... +.+.. -|-|+ |=..|+.+| |.||-|+....
T Consensus 18 ~~~C~IC~~~~~--~~v~~--pCgH~~~C~~C~~~~------------------~~CP~Cr~~i~ 60 (79)
T 2yho_A 18 AMLCMVCCEEEI--NSTFC--PCGHTVCCESCAAQL------------------QSCPVCRSRVE 60 (79)
T ss_dssp HTBCTTTSSSBC--CEEEE--TTCBCCBCHHHHTTC------------------SBCTTTCCBCC
T ss_pred CCEeEEeCcccC--cEEEE--CCCCHHHHHHHHHhc------------------CcCCCCCchhh
Confidence 358999998754 33433 57777 778898654 58999998754
No 108
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=40.43 E-value=65 Score=28.46 Aligned_cols=53 Identities=23% Similarity=0.182 Sum_probs=38.8
Q ss_pred cchhhhHHHHhhc-CeeeEEEecCCceEEEecChhhHHHHHHhhcCccccccEEE
Q 001378 890 RESDISALVLRFG-GECELVWLNDKNALAVFSDPARAATATRRLDHGSVYYGAVV 943 (1090)
Q Consensus 890 ~~~~i~~~~~~f~-g~~el~wi~d~~~l~vF~~p~~~~~a~~~l~~~~~~~~~~~ 943 (1090)
.+.+|..+..+|+ |..+...+.-.-+.+.|.++.-|+.||+.|++.. +.|-.+
T Consensus 28 t~~~l~~~F~~~g~g~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g~~l 81 (99)
T 2cpd_A 28 SEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKV-LDGSPI 81 (99)
T ss_dssp CHHHHHHHHHTTSTTCEEEEEECSSEEEEEESSHHHHHHHHHHHSSEE-ETTEEE
T ss_pred CHHHHHHHHHhcCCcceEEEEEeCCeEEEEeCCHHHHHHHHHHhCCCE-eCCcEE
Confidence 4567777777785 5555444555578889999999999999998764 446666
No 109
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=40.21 E-value=11 Score=33.27 Aligned_cols=33 Identities=33% Similarity=0.771 Sum_probs=23.6
Q ss_pred HHhccCcceEeeec-ccccccC-ceeeCCCCceee
Q 001378 105 DKLMKSKVECMICY-DMVKRSA-PIWSCSSCFSIF 137 (1090)
Q Consensus 105 e~l~~~~yeC~IC~-~~i~~~~-~vWsC~~C~~vf 137 (1090)
|..++..|.|+.|- ..|+|.+ -||.|..|-..|
T Consensus 20 e~~q~~ky~C~fCgk~~vkR~a~GIW~C~~C~~~~ 54 (72)
T 3jyw_9 20 EIQQHARYDCSFCGKKTVKRGAAGIWTCSCCKKTV 54 (72)
T ss_dssp HHHHHSCBCCSSCCSSCBSBCSSSCBCCSSSCCCC
T ss_pred HHHhccCccCCCCCCceeEecCCCeEECCCCCCEE
Confidence 44556899999994 4565544 499999996544
No 110
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=39.70 E-value=8.3 Score=34.37 Aligned_cols=39 Identities=28% Similarity=0.768 Sum_probs=25.7
Q ss_pred cCceeeCCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCCc
Q 001378 124 SAPIWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQS 171 (1090)
Q Consensus 124 ~~~vWsC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~ 171 (1090)
.+.+=-|..|-..||+.|+. -+... ......|.||.|+.
T Consensus 38 ~~~ll~CD~C~~~yH~~Cl~----PpL~~-----~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 38 PDKQLMCDECDMAFHIYCLD----PPLSS-----VPSEDEWYCPECRN 76 (77)
T ss_dssp GGGEEECTTTCCEEETTTSS----SCCSS-----CCSSSCCCCTTTC-
T ss_pred CcceeEeCCCCCccCcccCC----CcccC-----CCCCCceECcCccc
Confidence 35688899999999999974 11111 11122499999975
No 111
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=38.94 E-value=3.2 Score=39.44 Aligned_cols=50 Identities=24% Similarity=0.617 Sum_probs=33.7
Q ss_pred Eeeecccc------cccCceeeCCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCC
Q 001378 114 CMICYDMV------KRSAPIWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQ 170 (1090)
Q Consensus 114 C~IC~~~i------~~~~~vWsC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~ 170 (1090)
|.||...- +....+=.|..|-..||+.|+.-+.... .......|.||.|.
T Consensus 4 C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~-------~~~~~~~W~C~~C~ 59 (114)
T 2kwj_A 4 CDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMT-------EAVKTYKWQCIECK 59 (114)
T ss_dssp CSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHH-------HHHHHTTCCCGGGC
T ss_pred CccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhh-------hccCCCccCccccC
Confidence 77887654 2335788999999999999996432210 00113479999885
No 112
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=38.90 E-value=74 Score=29.21 Aligned_cols=47 Identities=11% Similarity=0.007 Sum_probs=36.5
Q ss_pred CcceEeeecccccccCceeeCCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCCcccc
Q 001378 110 SKVECMICYDMVKRSAPIWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQSVQL 174 (1090)
Q Consensus 110 ~~yeC~IC~~~i~~~~~vWsC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~~~~ 174 (1090)
..|.|+||.+-++ ++|=. .|-++|...||.+|... ...||-|+....
T Consensus 28 ~~~~CpI~~~~m~--dPV~~--~cGhtf~r~~I~~~l~~--------------~~~cP~~~~~l~ 74 (100)
T 2kre_A 28 DEFRDPLMDTLMT--DPVRL--PSGTIMDRSIILRHLLN--------------SPTDPFNRQTLT 74 (100)
T ss_dssp TTTBCTTTCSBCS--SEEEE--TTTEEEEHHHHHHHTTS--------------CSBCSSSCCBCC
T ss_pred HhhCCcCccCccc--CCeEC--CCCCEEchHHHHHHHHc--------------CCCCCCCCCCCC
Confidence 5789999988765 55544 37899999999999873 246999987654
No 113
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=38.68 E-value=59 Score=29.50 Aligned_cols=62 Identities=21% Similarity=0.199 Sum_probs=39.6
Q ss_pred eEEEecCcc---cchhhhHHHHhhcCeeeEEEecCC-------ceEEEecChhhHHHHHHhhcCccccccEEE
Q 001378 881 LVVSFLDLP---RESDISALVLRFGGECELVWLNDK-------NALAVFSDPARAATATRRLDHGSVYYGAVV 943 (1090)
Q Consensus 881 ~~v~~~dl~---~~~~i~~~~~~f~g~~el~wi~d~-------~~l~vF~~p~~~~~a~~~l~~~~~~~~~~~ 943 (1090)
.-|.+.+|+ .+.+|..+..+|+.=-.+..+.|. -+.+.|.++..|+.||+.|++.. +.|-.+
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g~~l 87 (115)
T 2dgo_A 16 FHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQW-LGGRQI 87 (115)
T ss_dssp EEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCE-ETTEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCE-ECCEEE
Confidence 334455554 445677777677532234444453 47789999999999999998644 445544
No 114
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=38.57 E-value=93 Score=27.59 Aligned_cols=59 Identities=22% Similarity=0.207 Sum_probs=39.0
Q ss_pred EEecCcc---cchhhhHHHHhhcCeee-EEEecCC-------ceEEEecChhhHHHHHHhhcCccccccEEE
Q 001378 883 VSFLDLP---RESDISALVLRFGGECE-LVWLNDK-------NALAVFSDPARAATATRRLDHGSVYYGAVV 943 (1090)
Q Consensus 883 v~~~dl~---~~~~i~~~~~~f~g~~e-l~wi~d~-------~~l~vF~~p~~~~~a~~~l~~~~~~~~~~~ 943 (1090)
|.+.+|+ .+.+|..+..+|+ ..+ +..+.|. -+.+.|.++..|+.||+.|++.. +.|-.+
T Consensus 18 l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g~~l 87 (105)
T 1x5u_A 18 VYVGGLDEKVSEPLLWELFLQAG-PVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIK-LYGKPI 87 (105)
T ss_dssp EEEECCCTTCCHHHHHHHHHTTS-CEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCB-CSSCBC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCe-ECCeEE
Confidence 4444553 4456777777775 443 4444454 47789999999999999988654 445444
No 115
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.46 E-value=57 Score=28.26 Aligned_cols=52 Identities=17% Similarity=0.160 Sum_probs=37.2
Q ss_pred cchhhhHHHHhhcCeeeEEEecCCceEEEecChhhHHHHHHhhcCccccccEEE
Q 001378 890 RESDISALVLRFGGECELVWLNDKNALAVFSDPARAATATRRLDHGSVYYGAVV 943 (1090)
Q Consensus 890 ~~~~i~~~~~~f~g~~el~wi~d~~~l~vF~~p~~~~~a~~~l~~~~~~~~~~~ 943 (1090)
.+.+|..+..+|+ ..+-..|.-.-+.+.|.++..|+.||+.|++.. +.|-.+
T Consensus 22 t~~~l~~~F~~~G-~v~~~~~~~~~afV~f~~~~~a~~A~~~l~g~~-~~g~~l 73 (90)
T 2dnp_A 22 TSQELRSLFERRG-RVIECDVVKDYAFVHMEKEADAKAAIAQLNGKE-VKGKRI 73 (90)
T ss_dssp CHHHHHHHHHHHS-CEEEEEECSSCEEEEESCHHHHHHHHHHHTTCE-ETTEEC
T ss_pred CHHHHHHHHHcCC-CEEEEEEECCEEEEEECCHHHHHHHHHHhCCCE-ECCcEE
Confidence 4466777777785 455445554488899999999999999998644 445554
No 116
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=37.91 E-value=82 Score=27.28 Aligned_cols=52 Identities=19% Similarity=0.297 Sum_probs=35.0
Q ss_pred cchhhhHHHHhhcCeee-EEEecCC-------ceEEEecChhhHHHHHHhhcCccccccEEE
Q 001378 890 RESDISALVLRFGGECE-LVWLNDK-------NALAVFSDPARAATATRRLDHGSVYYGAVV 943 (1090)
Q Consensus 890 ~~~~i~~~~~~f~g~~e-l~wi~d~-------~~l~vF~~p~~~~~a~~~l~~~~~~~~~~~ 943 (1090)
.+.+|..+..+|+ ..+ +..+.|. -+.+.|.++.-|..||+.|++ ..+.|..+
T Consensus 28 t~~~l~~~f~~~G-~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~l 87 (95)
T 2cqc_A 28 TERDLREVFSKYG-PIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANG-MELDGRRI 87 (95)
T ss_dssp CHHHHHHHHHTTS-CEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTT-EEETTEEE
T ss_pred CHHHHHHHHHhcC-CeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCC-CEECCEEE
Confidence 4456777776775 443 3343332 377889999999999999965 44446655
No 117
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=37.64 E-value=95 Score=28.67 Aligned_cols=72 Identities=24% Similarity=0.273 Sum_probs=45.2
Q ss_pred cCcccccCCceEEEecCcc---cchhhhHHHHhhcCeee-EEEecCCc-eEEEecChhhHHHHHHhhcCccc-cccEEE
Q 001378 871 FDPLVDMDPRLVVSFLDLP---RESDISALVLRFGGECE-LVWLNDKN-ALAVFSDPARAATATRRLDHGSV-YYGAVV 943 (1090)
Q Consensus 871 fna~v~~d~~~~v~~~dl~---~~~~i~~~~~~f~g~~e-l~wi~d~~-~l~vF~~p~~~~~a~~~l~~~~~-~~~~~~ 943 (1090)
|+......|.-+|.+-+|+ .+.+|..+..+|| ... +.-+.++. +.+.|.++.-|..|++.|+.... ..|-.+
T Consensus 12 ~~~~~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG-~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i 89 (100)
T 3r27_A 12 YDDPHKTPASPVVHIRGLIDGVVEADLVEALQEFG-PISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPA 89 (100)
T ss_dssp -----CCCCCSEEEEESCCTTCCHHHHHHHHGGGS-CEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEE
T ss_pred ccccccCCCCcEEEEeCCCCCCCHHHHHHHHhccC-CEEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEE
Confidence 4444444555566677774 4466777777785 443 33345544 77889999999999999986543 456555
No 118
>4g6v_B CDII; tRNAse, toxin, immunity; 2.64A {Burkholderia pseudomallei 1026A}
Probab=37.15 E-value=21 Score=33.03 Aligned_cols=57 Identities=14% Similarity=0.040 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhccccCCccccceEecCCCChhhHHHHHHHHHHcCCceeecCCCCCceEEEEeCCCCC
Q 001378 782 SVEERCKFLVLGKNRGSTNALKVHVFCPMLKDKRDAVRLIAERWKLAVNPAGWEPKRFIVVHVTPKSK 849 (1090)
Q Consensus 782 ~vE~~L~~fv~~~~~~~~~~~k~~~f~PM~~~kR~fIHeLAe~ygL~S~S~d~EP~R~VvV~kt~~Sk 849 (1090)
..|..|..|...++. .-..+-+.|+||.-. .+..+||+.|||.++|+ -.|....++.
T Consensus 15 dl~~kLd~lr~kyse--IF~~~y~i~~~~~ld--~s~keIA~EfGl~~eS~-------F~Isv~DKt~ 71 (111)
T 4g6v_B 15 AAESDLNKIRSNHSE--LFEGKFLISPVRDAD--FSLKEIAAEHGLVAESF-------FLVSLNDKNS 71 (111)
T ss_dssp HHHHHHHHHHHHCHH--HHTTTEEECCCEECC--HHHHHHHHHTTCCCSEE-------EEEEECCGGG
T ss_pred HHHHHHHHHHHhChh--hcCCeEEEeccccCC--hHHHHHHHHhCCCccce-------EEEEEcCCCc
Confidence 345556555554421 112567889998775 67789999999977765 3454555553
No 119
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=37.01 E-value=70 Score=29.82 Aligned_cols=64 Identities=22% Similarity=0.298 Sum_probs=44.2
Q ss_pred eEEEecCcc---cchhhhHHHHhhcCeeeEEEec----CCceEEEecChhhHHHHHHhhcCccccccEEE-Ee
Q 001378 881 LVVSFLDLP---RESDISALVLRFGGECELVWLN----DKNALAVFSDPARAATATRRLDHGSVYYGAVV-VQ 945 (1090)
Q Consensus 881 ~~v~~~dl~---~~~~i~~~~~~f~g~~el~wi~----d~~~l~vF~~p~~~~~a~~~l~~~~~~~~~~~-~~ 945 (1090)
+-|.+.+|+ .+.+|..+..+||.+....++. ..-+.+.|.++..|+.||+.|++ ..+.|-.+ |.
T Consensus 29 ~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng-~~l~Gr~i~V~ 100 (111)
T 2jvr_A 29 YRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNN-IEFRGSVITVE 100 (111)
T ss_dssp EEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTT-EEETTEEEEEE
T ss_pred CEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCC-CEECCeEEEEE
Confidence 445556664 4456777776774366666774 23477999999999999999965 45567776 53
No 120
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=36.66 E-value=49 Score=33.43 Aligned_cols=58 Identities=22% Similarity=0.299 Sum_probs=41.3
Q ss_pred eEEEecCcc---cchhhhHHHHhhcCeeeEEEec-CC---ceEEEecChhhHHHHHHhhcCccccc
Q 001378 881 LVVSFLDLP---RESDISALVLRFGGECELVWLN-DK---NALAVFSDPARAATATRRLDHGSVYY 939 (1090)
Q Consensus 881 ~~v~~~dl~---~~~~i~~~~~~f~g~~el~wi~-d~---~~l~vF~~p~~~~~a~~~l~~~~~~~ 939 (1090)
+-|.+.+|. .+.+|..+..+| |+.+-++|- +. -+.+.|.++.-|+.|++.|++.+.|-
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~f-G~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g 111 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKF-GTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYN 111 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHH-SCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSS
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhc-CCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecC
Confidence 445667774 334556666567 566655664 32 37899999999999999999998883
No 121
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=36.19 E-value=54 Score=29.22 Aligned_cols=48 Identities=27% Similarity=0.410 Sum_probs=34.6
Q ss_pred cchhhhHHHHhhcCee-eEEEecCC-------ceEEEecChhhHHHHHHhhcCcccc
Q 001378 890 RESDISALVLRFGGEC-ELVWLNDK-------NALAVFSDPARAATATRRLDHGSVY 938 (1090)
Q Consensus 890 ~~~~i~~~~~~f~g~~-el~wi~d~-------~~l~vF~~p~~~~~a~~~l~~~~~~ 938 (1090)
.+.+|..+..+|+ .. .+..+.|. -+.+.|.++..|+.||+.|++....
T Consensus 26 t~~~l~~~F~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 81 (106)
T 2dgp_A 26 DEKDLKPLFEEFG-KIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTL 81 (106)
T ss_dssp CHHHHHHHHHHHS-CCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCC
T ss_pred CHHHHHHHHHhcC-CeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCccc
Confidence 4566777777785 44 34444443 3778899999999999999887654
No 122
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.19 E-value=1.1e+02 Score=26.59 Aligned_cols=59 Identities=15% Similarity=0.187 Sum_probs=39.9
Q ss_pred EEecCcc---cchhhhHHHHhhcCeeeEEEecCCceEEEecChhhHHHHHHhhcCccccccEEE
Q 001378 883 VSFLDLP---RESDISALVLRFGGECELVWLNDKNALAVFSDPARAATATRRLDHGSVYYGAVV 943 (1090)
Q Consensus 883 v~~~dl~---~~~~i~~~~~~f~g~~el~wi~d~~~l~vF~~p~~~~~a~~~l~~~~~~~~~~~ 943 (1090)
|.+.+|+ .+.+|..+..+|+ ..+-..+.-.-+.+.|.++.-|+.|++.|++... .|-.+
T Consensus 13 l~V~nLp~~~t~~~l~~~F~~~G-~v~~v~~~~~~afV~f~~~~~a~~A~~~l~g~~~-~g~~l 74 (92)
T 2dgt_A 13 LHVGNISPTCTNQELRAKFEEYG-PVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF-QGKRM 74 (92)
T ss_dssp EEEESCCSSCCHHHHHHHHHTTS-CCCEEEECSSEEEEEESCHHHHHHHHHHHTTEEE-TTEEE
T ss_pred EEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCEEEEEECCHHHHHHHHHHhCCCee-CCcEE
Confidence 3444443 4456777776775 5544444444778889999999999999977654 46666
No 123
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=35.97 E-value=1e+02 Score=28.73 Aligned_cols=61 Identities=28% Similarity=0.412 Sum_probs=42.1
Q ss_pred EEEecCcc---cchhhhHHHHhhcCeee-EEEecCCc-eEEEecChhhHHHHHHhhcC-ccccccEEE
Q 001378 882 VVSFLDLP---RESDISALVLRFGGECE-LVWLNDKN-ALAVFSDPARAATATRRLDH-GSVYYGAVV 943 (1090)
Q Consensus 882 ~v~~~dl~---~~~~i~~~~~~f~g~~e-l~wi~d~~-~l~vF~~p~~~~~a~~~l~~-~~~~~~~~~ 943 (1090)
.|-+.+|+ .+.+|..+..+|| +.+ +.-+.|+. +.+.|.++..|+.|++.|.+ +..+.|-.+
T Consensus 18 ~LfV~nLp~~vte~dL~~lF~~fG-~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l 84 (105)
T 1sjq_A 18 VIHIRKLPIDVTEGEVISLGLPFG-KVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPI 84 (105)
T ss_dssp EEEECSCCTTSCHHHHHHHHHHHC-CEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEEC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcC-CEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 34455554 4567778877885 554 44445655 66789999999999999874 566767665
No 124
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=35.72 E-value=1.4e+02 Score=26.26 Aligned_cols=59 Identities=20% Similarity=0.267 Sum_probs=39.4
Q ss_pred EEecCcc---cchhhhHHHHhhcCeee-EEEecC-----CceEEEecChhhHHHHHHhhcCccccccEEE
Q 001378 883 VSFLDLP---RESDISALVLRFGGECE-LVWLND-----KNALAVFSDPARAATATRRLDHGSVYYGAVV 943 (1090)
Q Consensus 883 v~~~dl~---~~~~i~~~~~~f~g~~e-l~wi~d-----~~~l~vF~~p~~~~~a~~~l~~~~~~~~~~~ 943 (1090)
|.+.+|+ .+.+|..+..+|+ ..+ +..+.| .-+.+.|.++..|+.||+.|++.. +.|-.+
T Consensus 18 l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g~~l 85 (103)
T 2cqi_A 18 LYVGNLSRDVTEVLILQLFSQIG-PCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRK-ILGKEV 85 (103)
T ss_dssp EEEESCCTTCCHHHHHHHHHHHS-CEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEE-ETTEEE
T ss_pred EEEeCCCccCCHHHHHHHHHhcC-CEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCC-cCCCeE
Confidence 4444553 4466777777785 443 444444 247788999999999999997665 446655
No 125
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=35.59 E-value=1.3e+02 Score=27.33 Aligned_cols=62 Identities=19% Similarity=0.268 Sum_probs=39.0
Q ss_pred ceEEEecCcc---cchhhhHHHHhhcCeee-EEEecCC-------ceEEEecChhhHHHHHHhhcCccccccEEE
Q 001378 880 RLVVSFLDLP---RESDISALVLRFGGECE-LVWLNDK-------NALAVFSDPARAATATRRLDHGSVYYGAVV 943 (1090)
Q Consensus 880 ~~~v~~~dl~---~~~~i~~~~~~f~g~~e-l~wi~d~-------~~l~vF~~p~~~~~a~~~l~~~~~~~~~~~ 943 (1090)
..-|.+.+|+ .+.+|..+..+|| +.+ +..+.|. -+.+.|.++..|+.||+.|++.. +.|-.+
T Consensus 40 ~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g~~l 112 (118)
T 2khc_A 40 GCNLFIYHLPQEFTDTDLASTFLPFG-NVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQ-VGTKRL 112 (118)
T ss_dssp SEEEEEECSCTTCCHHHHHHHTTTSC-EEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCE-ETTEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcC-CEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCE-ECCEEE
Confidence 3445566665 3445666655564 544 3343342 36788999999999999987644 445544
No 126
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=35.20 E-value=15 Score=34.54 Aligned_cols=57 Identities=21% Similarity=0.458 Sum_probs=41.8
Q ss_pred cceEeeecccccccCceeeCC-CCceeechhHHHHHhcCCCCcchhh--hccCCCCCCCCCCCccc
Q 001378 111 KVECMICYDMVKRSAPIWSCS-SCFSIFHLSCIKKWARAPTSADLSA--ERSQGFNWRCPGCQSVQ 173 (1090)
Q Consensus 111 ~yeC~IC~~~i~~~~~vWsC~-~C~~vfHL~CikkWa~~~~s~~~~~--~~~~~~~WrCP~C~~~~ 173 (1090)
.|.|.||-..+.....++-|. .|-.=||+.|| ..+..... .......|.||.|....
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CV------glt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECT------GMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGT------TCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccC------CcCHHHHHhhccCCCCCEECccccCcC
Confidence 478999999988888899998 99999999998 22221110 01223689999998654
No 127
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=34.74 E-value=14 Score=34.94 Aligned_cols=59 Identities=19% Similarity=0.541 Sum_probs=38.4
Q ss_pred HHHhccCcceEeee------cccccccCceeeCCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCCccc
Q 001378 104 QDKLMKSKVECMIC------YDMVKRSAPIWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQSVQ 173 (1090)
Q Consensus 104 ~e~l~~~~yeC~IC------~~~i~~~~~vWsC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~~~ 173 (1090)
.+.+.++...|+-| -.. .....+=-|..|-..||+.|+.- +... .....|.||.|...+
T Consensus 45 ~~~~~~~~W~C~~C~~C~~C~~~-~~~~~ll~Cd~C~~~yH~~Cl~p----pl~~------~P~g~W~C~~C~~~~ 109 (114)
T 2kwj_A 45 TEAVKTYKWQCIECKSCILCGTS-ENDDQLLFCDDCDRGYHMYCLNP----PVAE------PPEGSWSCHLCWELL 109 (114)
T ss_dssp HHHHHHTTCCCGGGCCCTTTTCC-TTTTTEEECSSSCCEEETTTSSS----CCSS------CCSSCCCCHHHHHHH
T ss_pred hhccCCCccCccccCccCccccc-CCCCceEEcCCCCccccccccCC----CccC------CCCCCeECccccchh
Confidence 34455677765554 332 22467899999999999999841 2211 123589999997654
No 128
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=34.49 E-value=1.1e+02 Score=27.59 Aligned_cols=60 Identities=17% Similarity=0.264 Sum_probs=38.7
Q ss_pred EEecCcc---cchhhhHHHHhhcCeeeEEEecCC-------ceEEEecChhhHHHHHHhhcCccccccEEE
Q 001378 883 VSFLDLP---RESDISALVLRFGGECELVWLNDK-------NALAVFSDPARAATATRRLDHGSVYYGAVV 943 (1090)
Q Consensus 883 v~~~dl~---~~~~i~~~~~~f~g~~el~wi~d~-------~~l~vF~~p~~~~~a~~~l~~~~~~~~~~~ 943 (1090)
|-+.+|+ .+.+|..+..+|+.=-.+..+.|. -+.+.|.++.-|+.||+.|++.. +.|-.+
T Consensus 28 l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g~~l 97 (115)
T 2cpz_A 28 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQ-IGMKRL 97 (115)
T ss_dssp EEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCE-ETTEEC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCE-ECCEEE
Confidence 3444453 446677777677532234444454 37788999999999999997644 446555
No 129
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.41 E-value=22 Score=32.16 Aligned_cols=52 Identities=19% Similarity=0.380 Sum_probs=38.1
Q ss_pred CcceEeeecccccccCceeeCCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCC--CCcc
Q 001378 110 SKVECMICYDMVKRSAPIWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPG--CQSV 172 (1090)
Q Consensus 110 ~~yeC~IC~~~i~~~~~vWsC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~--C~~~ 172 (1090)
..|.|+||.+.+. ++|-. ..|-++|-..||.+|..... .......||- |+..
T Consensus 6 ~~~~CPI~~~~~~--dPV~~-~~cGh~f~r~cI~~~l~~~~--------~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 6 SGFTCPITKEEMK--KPVKN-KVCGHTYEEDAIVRMIESRQ--------KRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SCCBCTTTCSBCS--SEEEE-SSSCCEEEHHHHHHHHHHHH--------TTTCCBCCCSTTCCCC
T ss_pred cEeECcCcCchhc--CCEEc-CCCCCeecHHHHHHHHHHcc--------CcCCCCCCCcCcCccc
Confidence 4588999998776 56654 24889999999999997531 0123678999 8754
No 130
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=34.31 E-value=72 Score=28.01 Aligned_cols=47 Identities=13% Similarity=0.069 Sum_probs=33.4
Q ss_pred cchhhhHHHHhhcCeeeEEEec-C-CceEEEecChhhHHHHHHhhcCccc
Q 001378 890 RESDISALVLRFGGECELVWLN-D-KNALAVFSDPARAATATRRLDHGSV 937 (1090)
Q Consensus 890 ~~~~i~~~~~~f~g~~el~wi~-d-~~~l~vF~~p~~~~~a~~~l~~~~~ 937 (1090)
.+.+|..+..+|+ ..+-.++. + .-+.+.|.++..|+.||+.|++...
T Consensus 30 t~~~l~~~F~~~G-~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 78 (97)
T 1why_A 30 SLAALAREFDRFG-SIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPL 78 (97)
T ss_dssp CHHHHHHHHHTTS-CEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBC
T ss_pred CHHHHHHHHHhcC-CeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEe
Confidence 4566777776775 55444444 4 3577889999999999999976543
No 131
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=34.07 E-value=93 Score=27.03 Aligned_cols=60 Identities=13% Similarity=0.093 Sum_probs=38.3
Q ss_pred EEecCcc---cchhhhHHHHhhcCeeeE-EEecC-------CceEEEecChhhHHHHHHhhcCccccccEEE
Q 001378 883 VSFLDLP---RESDISALVLRFGGECEL-VWLND-------KNALAVFSDPARAATATRRLDHGSVYYGAVV 943 (1090)
Q Consensus 883 v~~~dl~---~~~~i~~~~~~f~g~~el-~wi~d-------~~~l~vF~~p~~~~~a~~~l~~~~~~~~~~~ 943 (1090)
|.+.+|+ .+.+|..+..+|+.-..+ ..+.| .-+.+.|.++..|+.||+.|++.. +.|..+
T Consensus 8 l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g~~l 78 (96)
T 1x5t_A 8 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQY-LCNRPI 78 (96)
T ss_dssp EEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCE-ETTEEC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCE-ECCEEE
Confidence 3344453 445677777677532233 33434 247788999999999999987655 446655
No 132
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=33.77 E-value=6.9 Score=35.63 Aligned_cols=53 Identities=26% Similarity=0.540 Sum_probs=38.7
Q ss_pred CcceEeeeccc-ccccCceeeCCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCCcccc
Q 001378 110 SKVECMICYDM-VKRSAPIWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQSVQL 174 (1090)
Q Consensus 110 ~~yeC~IC~~~-i~~~~~vWsC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~~~~ 174 (1090)
....|.||-.. ......+=-|..|-..||+.|+.= +. . ....|.||.|.....
T Consensus 24 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p----~~-v-------P~g~W~C~~C~~~~~ 77 (88)
T 2l43_A 24 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGV----PY-I-------PEGQWLCRHCLQSRA 77 (88)
T ss_dssp CCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTC----SS-C-------CSSCCCCHHHHHHTT
T ss_pred CCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCC----Cc-c-------CCCceECccccCccc
Confidence 45679999864 245568999999999999999842 11 1 135899999976543
No 133
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=33.59 E-value=94 Score=27.90 Aligned_cols=59 Identities=27% Similarity=0.383 Sum_probs=39.0
Q ss_pred EEecCcc---cchhhhHHHHhhcCeeeEEEec-CC----ceEEEecChhhHHHHHHhhcCccccccEEE
Q 001378 883 VSFLDLP---RESDISALVLRFGGECELVWLN-DK----NALAVFSDPARAATATRRLDHGSVYYGAVV 943 (1090)
Q Consensus 883 v~~~dl~---~~~~i~~~~~~f~g~~el~wi~-d~----~~l~vF~~p~~~~~a~~~l~~~~~~~~~~~ 943 (1090)
|-+.+|+ .+.+|..+..+|+ ..+-..|. +. -+.+.|.++..|+.||+.|++.. +.|-.+
T Consensus 25 l~V~nLp~~~t~~~l~~~F~~~G-~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g~~l 91 (109)
T 1x4a_A 25 IYVGNLPPDIRTKDIEDVFYKYG-AIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYD-YDGYRL 91 (109)
T ss_dssp EEEESCCTTCCHHHHHHHHGGGS-CEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCE-ETTEEC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCE-ECCeEE
Confidence 3344453 4456777776674 55444444 32 47789999999999999998764 446555
No 134
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=33.54 E-value=89 Score=28.79 Aligned_cols=60 Identities=23% Similarity=0.370 Sum_probs=38.4
Q ss_pred EEecCcc---cchhhhHHHHhhcCeeeEEEecCC------ceEEEecChhhHHHHHHhhcCccccccEEE
Q 001378 883 VSFLDLP---RESDISALVLRFGGECELVWLNDK------NALAVFSDPARAATATRRLDHGSVYYGAVV 943 (1090)
Q Consensus 883 v~~~dl~---~~~~i~~~~~~f~g~~el~wi~d~------~~l~vF~~p~~~~~a~~~l~~~~~~~~~~~ 943 (1090)
|.+.+|+ .+.+|..+..+||.=-.+..+.|. -+.+.|.++..|+.||+.|++... .|-.+
T Consensus 10 l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~-~g~~l 78 (116)
T 2fy1_A 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSL-HGKAI 78 (116)
T ss_dssp EEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBC-SSSBC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEE-CCEEE
Confidence 3444553 456677777777532234455553 477889999999999999876543 34433
No 135
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=33.40 E-value=55 Score=30.26 Aligned_cols=60 Identities=20% Similarity=0.307 Sum_probs=38.8
Q ss_pred EEEecCcc---cchhhhHHHHhhcCeeeEEEe-cCC-------ceEEEecChhhHHHHHHhhcCccccccEEE
Q 001378 882 VVSFLDLP---RESDISALVLRFGGECELVWL-NDK-------NALAVFSDPARAATATRRLDHGSVYYGAVV 943 (1090)
Q Consensus 882 ~v~~~dl~---~~~~i~~~~~~f~g~~el~wi-~d~-------~~l~vF~~p~~~~~a~~~l~~~~~~~~~~~ 943 (1090)
-|.+.+|+ .+.+|..+...|+ ..+-..| .|. -+.+.|.++.-|+.||+.|++... .|-.+
T Consensus 24 ~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g~~l 94 (126)
T 3ex7_B 24 ILFVTGVHEEATEEDIHDKFAEYG-EIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDL-MGQPI 94 (126)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTTS-CEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBS-SSSBC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCee-CCeEE
Confidence 34455553 4456777776674 5544444 342 477899999999999999976543 45443
No 136
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=33.35 E-value=13 Score=37.39 Aligned_cols=54 Identities=28% Similarity=0.559 Sum_probs=37.0
Q ss_pred CcceEeeecccccccCceeeCCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCCccc
Q 001378 110 SKVECMICYDMVKRSAPIWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQSVQ 173 (1090)
Q Consensus 110 ~~yeC~IC~~~i~~~~~vWsC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~~~ 173 (1090)
...-| ||-..-.....+=.|..|-..||+.|+. .+.. +......|.||.|+...
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~------~~~~---~~~~~~~~~C~~C~~~~ 60 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVG------ILQS---EAELIDEYVCPQCQSTE 60 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHT------CCHH---HHTTCSSCCCHHHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcC------Cchh---hccCccCeecCCCcchh
Confidence 34557 8876655556678899999999999992 1111 11224589999998754
No 137
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=33.35 E-value=18 Score=31.65 Aligned_cols=47 Identities=23% Similarity=0.734 Sum_probs=30.7
Q ss_pred ceEeeecccccccCceeeCCC--Cc-eeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCCccc
Q 001378 112 VECMICYDMVKRSAPIWSCSS--CF-SIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQSVQ 173 (1090)
Q Consensus 112 yeC~IC~~~i~~~~~vWsC~~--C~-~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~~~ 173 (1090)
.-| ||-..- ...+=.|.. |- .-||+.||. .... ....|.||.|....
T Consensus 17 ~~C-~C~~~~--~g~MI~CD~~~C~~~wfH~~Cvg---l~~~---------p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 17 TYC-LCHQVS--YGEMIGCDNPDCSIEWFHFACVG---LTTK---------PRGKWFCPRCSQES 66 (71)
T ss_dssp CCS-TTCCCS--CSSEECCSCSSCSCCCEETTTTT---CSSC---------CSSCCCCTTTSSCS
T ss_pred CEE-ECCCCC--CCCEeEeeCCCCCCccEecccCC---cCcC---------CCCCEECCCCCccc
Confidence 335 665432 245677888 87 689999996 1111 13579999998654
No 138
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=33.31 E-value=1.2e+02 Score=26.94 Aligned_cols=62 Identities=21% Similarity=0.190 Sum_probs=39.4
Q ss_pred eEEEecCcc---cchhhhHHHHhhcCeeeEEEecCC------ceEEEecChhhHHHHHHhhcCccccccEEE
Q 001378 881 LVVSFLDLP---RESDISALVLRFGGECELVWLNDK------NALAVFSDPARAATATRRLDHGSVYYGAVV 943 (1090)
Q Consensus 881 ~~v~~~dl~---~~~~i~~~~~~f~g~~el~wi~d~------~~l~vF~~p~~~~~a~~~l~~~~~~~~~~~ 943 (1090)
.-|-+.+|+ .+.+|..+...|+.=-.+..+.|. .+.+.|.++.-|+.||+.|++.. +.|-.+
T Consensus 30 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g~~l 100 (107)
T 3ulh_A 30 GKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVP-LDGRPM 100 (107)
T ss_dssp EEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCE-ETTEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCE-eCCcEE
Confidence 345555554 345677777677532234444342 36788999999999999997654 456555
No 139
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=33.15 E-value=8.3 Score=39.80 Aligned_cols=58 Identities=16% Similarity=0.484 Sum_probs=38.2
Q ss_pred cCcceEeeecccccccC---ceeeCCCCceeechhHHHHHhcCCCCcch--h-hhccCCCCCCCCCCCccc
Q 001378 109 KSKVECMICYDMVKRSA---PIWSCSSCFSIFHLSCIKKWARAPTSADL--S-AERSQGFNWRCPGCQSVQ 173 (1090)
Q Consensus 109 ~~~yeC~IC~~~i~~~~---~vWsC~~C~~vfHL~CikkWa~~~~s~~~--~-~~~~~~~~WrCP~C~~~~ 173 (1090)
+|.| |.||-......+ .+=-|..|-.-||..|+. .+... . ...+....|.||.|+...
T Consensus 1 ~G~~-CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvg------i~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 1 SGNF-CPLCDKCYDDDDYESKMMQCGKCDRWVHSKCEN------LSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp -CCB-CTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSS------CCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred CcCc-CCCCcCccCCcccCCCeEECCCCCcccchhccc------cCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 4777 999977666554 366999999999999982 22110 0 000112389999998764
No 140
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=32.61 E-value=94 Score=27.88 Aligned_cols=59 Identities=19% Similarity=0.251 Sum_probs=38.1
Q ss_pred EEecCcc---cchhhhHHHHhhcCeee-EEEecCCc-------eEEEecChhhHHHHHHhhcCccccccEEE
Q 001378 883 VSFLDLP---RESDISALVLRFGGECE-LVWLNDKN-------ALAVFSDPARAATATRRLDHGSVYYGAVV 943 (1090)
Q Consensus 883 v~~~dl~---~~~~i~~~~~~f~g~~e-l~wi~d~~-------~l~vF~~p~~~~~a~~~l~~~~~~~~~~~ 943 (1090)
|-+.+|+ .+.+|..+..+|| +.+ +..+.|.. +.+.|.++.-|+.||+.|++. .+.|-.+
T Consensus 22 lfV~nLp~~~te~~L~~~F~~~G-~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~-~~~gr~l 91 (99)
T 4fxv_A 22 LIVNYLPQNMTQDELRSLFSSIG-EVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGL-RLQSKTI 91 (99)
T ss_dssp EEEESCCTTCCHHHHHHHHHTTS-CEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTC-EETTEEC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcC-CEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCC-EECCEEE
Confidence 3344553 4456777776775 443 44444432 668899999999999999654 4556555
No 141
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=32.55 E-value=1.2e+02 Score=25.65 Aligned_cols=59 Identities=19% Similarity=0.286 Sum_probs=37.5
Q ss_pred EEecCcc---cchhhhHHHHhhcCeeeEEEe-cC-------CceEEEecChhhHHHHHHhhcCccccccEEE
Q 001378 883 VSFLDLP---RESDISALVLRFGGECELVWL-ND-------KNALAVFSDPARAATATRRLDHGSVYYGAVV 943 (1090)
Q Consensus 883 v~~~dl~---~~~~i~~~~~~f~g~~el~wi-~d-------~~~l~vF~~p~~~~~a~~~l~~~~~~~~~~~ 943 (1090)
|-+.+|+ .+.+|..+..+|| ..+-..+ .| .-+.+.|.++.-|+.|++.|++.. +.|-.+
T Consensus 10 l~V~nl~~~~~~~~l~~~f~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g~~l 79 (85)
T 3mdf_A 10 LYVGGLAEEVDDKVLHAAFIPFG-DITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESE-LFGRTI 79 (85)
T ss_dssp EEEECCCTTCCHHHHHHHHGGGS-CEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCE-ETTEEC
T ss_pred EEEECCCCCCCHHHHHHHHhccC-CEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCE-ECCcEE
Confidence 4444453 3456677776675 4443333 23 237789999999999999996554 446554
No 142
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=32.25 E-value=94 Score=27.22 Aligned_cols=59 Identities=24% Similarity=0.318 Sum_probs=38.5
Q ss_pred EEecCcc---cchhhhHHHHhhcCeee-EEEecCC-------ceEEEecChhhHHHHHHhhcCccccccEEE
Q 001378 883 VSFLDLP---RESDISALVLRFGGECE-LVWLNDK-------NALAVFSDPARAATATRRLDHGSVYYGAVV 943 (1090)
Q Consensus 883 v~~~dl~---~~~~i~~~~~~f~g~~e-l~wi~d~-------~~l~vF~~p~~~~~a~~~l~~~~~~~~~~~ 943 (1090)
|-+.+|+ .+.+|..+..+|+ ..+ +..+.|. -+.+.|.++.-|+.||+.|++.... |-.+
T Consensus 11 l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~-g~~l 80 (99)
T 1whw_A 11 LFVRNLSYTSSEEDLEKLFSAYG-PLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQ-GRML 80 (99)
T ss_dssp EEEECCCTTCCHHHHHHHHHTTS-CEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESS-SCEE
T ss_pred EEEeCCCCCCCHHHHHHHHHhcC-CEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEEC-CcEE
Confidence 3344443 4456777776775 544 3333343 4779999999999999999865443 5554
No 143
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.21 E-value=72 Score=27.60 Aligned_cols=52 Identities=21% Similarity=0.277 Sum_probs=36.3
Q ss_pred cchhhhHHHHhhcCeeeEEEecCCceEEEecChhhHHHHHHhhcCccccccEEE
Q 001378 890 RESDISALVLRFGGECELVWLNDKNALAVFSDPARAATATRRLDHGSVYYGAVV 943 (1090)
Q Consensus 890 ~~~~i~~~~~~f~g~~el~wi~d~~~l~vF~~p~~~~~a~~~l~~~~~~~~~~~ 943 (1090)
.+.+|..+..+|+ ..+-..|.-.-+.+.|.++..|+.||+.|++.. +.|..+
T Consensus 21 t~~~l~~~F~~~G-~i~~v~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g~~l 72 (90)
T 2dnq_A 21 TEQEIRSLFEQYG-KVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYK-LHGVNI 72 (90)
T ss_dssp CHHHHHHHHHTSS-CEEEEEEETTEEEEEESSHHHHHHHHHHHTTCB-CSSCBC
T ss_pred CHHHHHHHHHhCC-CEEEEEEECCEEEEEECCHHHHHHHHHHhcCCc-cCCcEE
Confidence 4456777776774 555445555678889999999999999987644 334444
No 144
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=32.05 E-value=13 Score=32.64 Aligned_cols=51 Identities=27% Similarity=0.553 Sum_probs=37.7
Q ss_pred CcceEeeecccc-cccCceeeCCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCCcc
Q 001378 110 SKVECMICYDMV-KRSAPIWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQSV 172 (1090)
Q Consensus 110 ~~yeC~IC~~~i-~~~~~vWsC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~~ 172 (1090)
....|.||-+.- .....+=-|..|-..||+.|+.= + .. ....|.||.|...
T Consensus 15 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~----~-~v-------P~g~W~C~~C~~~ 66 (71)
T 2ku3_A 15 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGV----P-YI-------PEGQWLCRHCLQS 66 (71)
T ss_dssp SSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTC----S-SC-------CSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCC----C-cC-------CCCCcCCccCcCc
Confidence 456799997643 45678999999999999999841 1 11 1358999999764
No 145
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=32.02 E-value=64 Score=28.51 Aligned_cols=52 Identities=21% Similarity=0.376 Sum_probs=35.5
Q ss_pred cchhhhHHHHhhcCee-eEEEecCC-------ceEEEecChhhHHHHHHhhcCccccccEEE
Q 001378 890 RESDISALVLRFGGEC-ELVWLNDK-------NALAVFSDPARAATATRRLDHGSVYYGAVV 943 (1090)
Q Consensus 890 ~~~~i~~~~~~f~g~~-el~wi~d~-------~~l~vF~~p~~~~~a~~~l~~~~~~~~~~~ 943 (1090)
.+.+|..+..+|+ .. .+.++.|. -+.+.|.++..|+.||+.|++... .|..+
T Consensus 25 t~~~l~~~f~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~-~g~~l 84 (102)
T 1x5s_A 25 NEQSLEQVFSKYG-QISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV-DGRQI 84 (102)
T ss_dssp CHHHHHHHHHHHS-CCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCT-TSCCC
T ss_pred CHHHHHHHHHhcC-CeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEE-CCeEE
Confidence 4566777777785 44 34444442 477889999999999999886553 34433
No 146
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=31.82 E-value=91 Score=27.04 Aligned_cols=54 Identities=17% Similarity=0.049 Sum_probs=37.4
Q ss_pred cchhhhHHHHhhcCeeeEEEec-CCceEEEecChhhHHHHHHhhcCccccccEEE
Q 001378 890 RESDISALVLRFGGECELVWLN-DKNALAVFSDPARAATATRRLDHGSVYYGAVV 943 (1090)
Q Consensus 890 ~~~~i~~~~~~f~g~~el~wi~-d~~~l~vF~~p~~~~~a~~~l~~~~~~~~~~~ 943 (1090)
.+.+|..+..+|+.-.+..++. ..-+.+.|.++..|+.||+.|++...+.|-.+
T Consensus 21 t~~~l~~~F~~~G~vv~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l 75 (93)
T 2cqh_A 21 TADDLRQLFGDRKLPLAGQVLLKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIM 75 (93)
T ss_dssp CHHHHHHHHHHTTCCCSSCEEEETTEEEECCSCHHHHHHHHHHHTTTCEETTEEC
T ss_pred CHHHHHHHHHHcCCceEEEEEcCCCEEEEEECCHHHHHHHHHHccCCeeECCEEE
Confidence 4566777777786424433444 55677889999999999999988344556655
No 147
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.66 E-value=94 Score=26.89 Aligned_cols=52 Identities=23% Similarity=0.494 Sum_probs=34.2
Q ss_pred cchhhhHHHHhhcCeee-EEEecCC-------ceEEEecChhhHHHHHHhhcCccccccEEE
Q 001378 890 RESDISALVLRFGGECE-LVWLNDK-------NALAVFSDPARAATATRRLDHGSVYYGAVV 943 (1090)
Q Consensus 890 ~~~~i~~~~~~f~g~~e-l~wi~d~-------~~l~vF~~p~~~~~a~~~l~~~~~~~~~~~ 943 (1090)
.+.+|..+..+|+ ..+ +..+.|. -+.+.|.++.-|+.||+.|++.. +.|-.+
T Consensus 29 t~~~l~~~f~~~G-~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g~~l 88 (94)
T 2e5h_A 29 TNNDLYRIFSKYG-KVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQ-LFGRVI 88 (94)
T ss_dssp CHHHHHHHTTTTS-CEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEE-ETTEEE
T ss_pred CHHHHHHHHHhcC-CeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCe-eCCcEE
Confidence 3455666665664 443 4444442 47789999999999999997644 446555
No 148
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=31.58 E-value=68 Score=28.72 Aligned_cols=54 Identities=17% Similarity=0.252 Sum_probs=36.7
Q ss_pred cchhhhHHHHhhcC-eeeEEEe-cC-------CceEEEecChhhHHHHHHhhcCc-cccccEEE
Q 001378 890 RESDISALVLRFGG-ECELVWL-ND-------KNALAVFSDPARAATATRRLDHG-SVYYGAVV 943 (1090)
Q Consensus 890 ~~~~i~~~~~~f~g-~~el~wi-~d-------~~~l~vF~~p~~~~~a~~~l~~~-~~~~~~~~ 943 (1090)
.+.+|..+..+|+. --.+.++ .| .-+.+.|.++..|+.||+.|+++ ..+.|-.+
T Consensus 21 t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 21 KREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred CHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 44567777777864 3345554 22 23678899999999999999755 56655444
No 149
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=31.44 E-value=17 Score=33.60 Aligned_cols=33 Identities=33% Similarity=0.771 Sum_probs=24.1
Q ss_pred HHhccCcceEeeec-cccccc-CceeeCCCCceee
Q 001378 105 DKLMKSKVECMICY-DMVKRS-APIWSCSSCFSIF 137 (1090)
Q Consensus 105 e~l~~~~yeC~IC~-~~i~~~-~~vWsC~~C~~vf 137 (1090)
|..++..|.|+.|- ..|+|. .-||.|..|-.+|
T Consensus 30 e~~q~~ky~CpfCgk~~vkR~a~GIW~C~~C~~~~ 64 (92)
T 3izc_m 30 EIQQHARYDCSFCGKKTVKRGAAGIWTCSCCKKTV 64 (92)
T ss_dssp HHHHHSCCCCSSSCSSCCEEEETTEEECTTTCCEE
T ss_pred HHHHhcCCcCCCCCCceeeecccceEEcCCCCCEE
Confidence 44566899999994 456554 4599999996654
No 150
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=31.42 E-value=1.1e+02 Score=27.37 Aligned_cols=52 Identities=23% Similarity=0.271 Sum_probs=36.0
Q ss_pred cchhhhHHHHhhcCee-eEEEecCC-ceEEEecChhhHHHHHHhhcCccccccEEE
Q 001378 890 RESDISALVLRFGGEC-ELVWLNDK-NALAVFSDPARAATATRRLDHGSVYYGAVV 943 (1090)
Q Consensus 890 ~~~~i~~~~~~f~g~~-el~wi~d~-~~l~vF~~p~~~~~a~~~l~~~~~~~~~~~ 943 (1090)
.+.+|..+..+|| .. .+..+.+. -+.+.|.++..|+.||+.|++. .+.|-.+
T Consensus 38 t~~~l~~~F~~~G-~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l 91 (109)
T 1x4g_A 38 TDQLMRQTFSPFG-QIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGT-TIEGHVV 91 (109)
T ss_dssp CHHHHHHHHHHHS-CEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTC-EETTEEC
T ss_pred CHHHHHHHHHhcC-CeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCC-EECCcEE
Confidence 4466777777786 44 34444454 4667899999999999999664 4556555
No 151
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.40 E-value=61 Score=28.79 Aligned_cols=59 Identities=15% Similarity=0.233 Sum_probs=38.1
Q ss_pred EEecCcc---cchhhhHHHHhhcCeee-EEEecCC-------ceEEEecChhhHHHHHHhhcCccccccEEE
Q 001378 883 VSFLDLP---RESDISALVLRFGGECE-LVWLNDK-------NALAVFSDPARAATATRRLDHGSVYYGAVV 943 (1090)
Q Consensus 883 v~~~dl~---~~~~i~~~~~~f~g~~e-l~wi~d~-------~~l~vF~~p~~~~~a~~~l~~~~~~~~~~~ 943 (1090)
|-+.+|+ .+.+|..+..+|+ ..+ +.++.|. -+.+.|.++.-|+.||+.|++.. +.|..+
T Consensus 16 l~V~nLp~~~t~~~l~~~f~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g~~l 85 (103)
T 2dnm_A 16 LKVDNLTYRTSPDSLRRVFEKYG-RVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAE-LDGREL 85 (103)
T ss_dssp EEEESCCTTCCHHHHHHHHTTTS-CEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCC-BTTBCC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcC-CEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCE-ECCcEE
Confidence 4444554 4456666666674 444 3333342 47789999999999999998755 435444
No 152
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=31.03 E-value=41 Score=30.84 Aligned_cols=47 Identities=13% Similarity=-0.019 Sum_probs=36.3
Q ss_pred CcceEeeecccccccCceeeCCCCc-eeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCCcccc
Q 001378 110 SKVECMICYDMVKRSAPIWSCSSCF-SIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQSVQL 174 (1090)
Q Consensus 110 ~~yeC~IC~~~i~~~~~vWsC~~C~-~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~~~~ 174 (1090)
..|.|+||.+-++ ++|=. .|- ++|-..||.+|... ...||-|+....
T Consensus 21 ~~~~CpI~~~~m~--dPV~~--~cG~htf~r~cI~~~l~~--------------~~~cP~~~~~l~ 68 (98)
T 1wgm_A 21 DEFLDPIMSTLMC--DPVVL--PSSRVTVDRSTIARHLLS--------------DQTDPFNRSPLT 68 (98)
T ss_dssp TTTBCTTTCSBCS--SEEEC--TTTCCEEEHHHHHHHTTT--------------SCBCTTTCSBCC
T ss_pred HhcCCcCcccccc--CCeEC--CCCCeEECHHHHHHHHHh--------------CCCCCCCCCCCC
Confidence 4789999998765 55543 477 99999999999874 237999987754
No 153
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=30.99 E-value=28 Score=30.97 Aligned_cols=47 Identities=9% Similarity=0.012 Sum_probs=36.2
Q ss_pred CcceEeeecccccccCceeeCCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCCcccc
Q 001378 110 SKVECMICYDMVKRSAPIWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQSVQL 174 (1090)
Q Consensus 110 ~~yeC~IC~~~i~~~~~vWsC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~~~~ 174 (1090)
..|.|.||.+-++ ++|=. .|-++|-..||.+|... ...||-|+....
T Consensus 13 ~~~~CpI~~~~m~--dPV~~--~cGhtf~r~~I~~~l~~--------------~~~cP~~~~~l~ 59 (85)
T 2kr4_A 13 DEFRDPLMDTLMT--DPVRL--PSGTVMDRSIILRHLLN--------------SPTDPFNRQMLT 59 (85)
T ss_dssp TTTBCTTTCSBCS--SEEEC--TTSCEEEHHHHHHHHHH--------------CSBCTTTCCBCC
T ss_pred hheECcccCchhc--CCeEC--CCCCEECHHHHHHHHhc--------------CCCCCCCcCCCC
Confidence 4789999998765 45543 37899999999999873 246999987654
No 154
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.79 E-value=1e+02 Score=27.06 Aligned_cols=51 Identities=24% Similarity=0.360 Sum_probs=33.0
Q ss_pred cchhhhHHHHhhcCee-eEEEecCC-------ceEEEecChhhHHHHHHhhcCccccccEEE
Q 001378 890 RESDISALVLRFGGEC-ELVWLNDK-------NALAVFSDPARAATATRRLDHGSVYYGAVV 943 (1090)
Q Consensus 890 ~~~~i~~~~~~f~g~~-el~wi~d~-------~~l~vF~~p~~~~~a~~~l~~~~~~~~~~~ 943 (1090)
.+.+|..+..+|+ .. .+..+.|. -+.+.|.++.-|+.||+ | ++..+.|-.+
T Consensus 23 t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~-~~~~~~g~~l 81 (99)
T 2dgs_A 23 GETELREYFKKFG-VVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-M-HFHDIMGKKV 81 (99)
T ss_dssp CHHHHHHHHSSSS-CEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-H-CCCBSSSCBC
T ss_pred CHHHHHHHHHhcC-CeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-h-CCCEECCeEE
Confidence 4455666665664 44 34444442 37788999999999998 7 4445556554
No 155
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=30.74 E-value=1.3e+02 Score=27.25 Aligned_cols=62 Identities=24% Similarity=0.322 Sum_probs=40.2
Q ss_pred eEEEecCcc---cchhhhHHHHhhcCeee-EEEecCCc-eEEEecChhhHHHHHHhhc-CccccccEEE
Q 001378 881 LVVSFLDLP---RESDISALVLRFGGECE-LVWLNDKN-ALAVFSDPARAATATRRLD-HGSVYYGAVV 943 (1090)
Q Consensus 881 ~~v~~~dl~---~~~~i~~~~~~f~g~~e-l~wi~d~~-~l~vF~~p~~~~~a~~~l~-~~~~~~~~~~ 943 (1090)
-.|-+.+|+ .+.+|..+..+|| ..+ +.-+.++. +.+.|.++.-|+.|++.|+ ++..+.|-.+
T Consensus 16 ~~l~V~nLp~~~te~~L~~~F~~fG-~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 83 (101)
T 2cq1_A 16 RVLHIRKLPGEVTETEVIALGLPFG-KVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPI 83 (101)
T ss_dssp SEEEEESCCTTCCHHHHHHTTTTTS-CEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcC-CEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCcEE
Confidence 345555554 4455666665674 544 43444644 6788999999999999886 4555667666
No 156
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=30.24 E-value=1.2e+02 Score=27.41 Aligned_cols=62 Identities=19% Similarity=0.200 Sum_probs=40.5
Q ss_pred EEecCcc---cchhhhHHHHhhcCeeeEEEecCC-------ceEEEecChhhHHHHHHhhcCccccccEEE-EeC
Q 001378 883 VSFLDLP---RESDISALVLRFGGECELVWLNDK-------NALAVFSDPARAATATRRLDHGSVYYGAVV-VQN 946 (1090)
Q Consensus 883 v~~~dl~---~~~~i~~~~~~f~g~~el~wi~d~-------~~l~vF~~p~~~~~a~~~l~~~~~~~~~~~-~~~ 946 (1090)
|.+.+|+ .+.+|..+..+|+.=-.+.++.|. -+.+.|.++..|+.||+. ++..+.|-.+ |.-
T Consensus 30 l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~--~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 30 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA--RPHSIDGRVVEPKR 102 (116)
T ss_dssp EEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS--CSEEETTEEEEEEC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh--CCcEECCEEEEEEE
Confidence 3444553 445666666567532244555452 477889999999999987 7777888777 533
No 157
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=30.20 E-value=8.7 Score=35.99 Aligned_cols=49 Identities=18% Similarity=0.594 Sum_probs=32.0
Q ss_pred EeeecccccccCceeeCCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCCccc
Q 001378 114 CMICYDMVKRSAPIWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQSVQ 173 (1090)
Q Consensus 114 C~IC~~~i~~~~~vWsC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~~~ 173 (1090)
|.||-.. .....+=.|..|-..||+.|+.- +... .....|+||.|..-.
T Consensus 57 C~~C~~~-~~~~~ll~Cd~C~~~yH~~Cl~p----pl~~------~P~g~W~C~~C~~c~ 105 (111)
T 2ysm_A 57 CQNCKQS-GEDSKMLVCDTCDKGYHTFCLQP----VMKS------VPTNGWKCKNCRICI 105 (111)
T ss_dssp CTTTCCC-SCCTTEEECSSSCCEEEGGGSSS----CCSS------CCSSCCCCHHHHCCS
T ss_pred ccccCcc-CCCCCeeECCCCCcHHhHHhcCC----cccc------CCCCCcCCcCCcCcC
Confidence 4444333 23356999999999999999842 2111 113589999997653
No 158
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=30.08 E-value=63 Score=28.71 Aligned_cols=59 Identities=25% Similarity=0.347 Sum_probs=37.1
Q ss_pred EEecCcc---cchhhhHHHHhhcCeee-EEEecCC-------ceEEEecChhhHHHHHHhhcCccccccEEE
Q 001378 883 VSFLDLP---RESDISALVLRFGGECE-LVWLNDK-------NALAVFSDPARAATATRRLDHGSVYYGAVV 943 (1090)
Q Consensus 883 v~~~dl~---~~~~i~~~~~~f~g~~e-l~wi~d~-------~~l~vF~~p~~~~~a~~~l~~~~~~~~~~~ 943 (1090)
|-+.+|+ .+.+|..+..+|+ ..+ +..+.|. -+.+.|.++.-|+.||+.|.+.. +.|..+
T Consensus 18 l~V~nlp~~~t~~~l~~~f~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g~~l 87 (103)
T 2cq0_A 18 IRVTNLSEDTRETDLQELFRPFG-SISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFG-YDHLIL 87 (103)
T ss_dssp EEEESCCTTCCHHHHHTTSTTTC-CEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCE-ETTEEC
T ss_pred EEEeCCCCCCCHHHHHHHHHhCC-CeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCe-eCCcEE
Confidence 4445554 3345555555564 443 4444353 37789999999999999987655 446555
No 159
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=29.86 E-value=1.2e+02 Score=35.06 Aligned_cols=52 Identities=15% Similarity=0.165 Sum_probs=35.1
Q ss_pred cchhhhHHHHhhcCeeeEEEec-C-------CceEEEecChhhHHHHHHhhcCccccccEEE
Q 001378 890 RESDISALVLRFGGECELVWLN-D-------KNALAVFSDPARAATATRRLDHGSVYYGAVV 943 (1090)
Q Consensus 890 ~~~~i~~~~~~f~g~~el~wi~-d-------~~~l~vF~~p~~~~~a~~~l~~~~~~~~~~~ 943 (1090)
.+.+|..+...|| ..+-++|- | .-+.|.|.++.-|..||..|.+.. +.|-.|
T Consensus 115 te~~L~~~F~~~G-~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~-i~gr~i 174 (437)
T 3pgw_S 115 TESKLRREFEVYG-PIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKK-IDGRRV 174 (437)
T ss_pred CHHHHHHHHHHcC-CeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCE-ECCEEE
Confidence 3455666666674 55434442 3 237789999999999999997654 457777
No 160
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=29.79 E-value=82 Score=28.39 Aligned_cols=52 Identities=15% Similarity=0.253 Sum_probs=37.2
Q ss_pred cchhhhHHHHhhcCeeeEEEecCCceEEEecChhhHHHHHHhhcCccccccEEE
Q 001378 890 RESDISALVLRFGGECELVWLNDKNALAVFSDPARAATATRRLDHGSVYYGAVV 943 (1090)
Q Consensus 890 ~~~~i~~~~~~f~g~~el~wi~d~~~l~vF~~p~~~~~a~~~l~~~~~~~~~~~ 943 (1090)
.+.+|..+..+|+ ..+-..|.-.-+.+.|.++..|+.||+.|++.. +.|..+
T Consensus 41 t~~~l~~~F~~~G-~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~-~~g~~l 92 (110)
T 1wf1_A 41 KKSDVETIFSKYG-RVAGCSVHKGYAFVQYSNERHARAAVLGENGRV-LAGQTL 92 (110)
T ss_dssp CHHHHHHHHGGGS-CCSEEEEETTEEEEECSSSHHHHHHHHHHTTCE-ETTEEC
T ss_pred CHHHHHHHHHhCC-CeEEEEEeCCEEEEEECCHHHHHHHHHHcCCCE-ECCeEE
Confidence 3456667766674 555556666667888999999999999998754 446555
No 161
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=29.75 E-value=16 Score=35.02 Aligned_cols=35 Identities=31% Similarity=0.589 Sum_probs=27.0
Q ss_pred HHhccCcceEeeecc-cccccC-ceeeCCCCceeech
Q 001378 105 DKLMKSKVECMICYD-MVKRSA-PIWSCSSCFSIFHL 139 (1090)
Q Consensus 105 e~l~~~~yeC~IC~~-~i~~~~-~vWsC~~C~~vfHL 139 (1090)
|..++..|.|+.|-. .|+|.+ -||.|..|-.+|--
T Consensus 54 E~~q~akytCPfCGk~~vKR~avGIW~C~~Cgk~fAG 90 (116)
T 3cc2_Z 54 ESEMNEDHACPNCGEDRVDRQGTGIWQCSYCDYKFTG 90 (116)
T ss_dssp HHHHHSCEECSSSCCEEEEEEETTEEEETTTCCEEEC
T ss_pred HHHhccCCcCCCCCCceeEecCceeEECCCCCCEEEC
Confidence 345678999999976 665554 49999999888754
No 162
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.71 E-value=78 Score=27.77 Aligned_cols=47 Identities=17% Similarity=0.261 Sum_probs=32.8
Q ss_pred cchhhhHHHHhhcCee-eEEEecCC-------ceEEEecChhhHHHHHHhhcCcc
Q 001378 890 RESDISALVLRFGGEC-ELVWLNDK-------NALAVFSDPARAATATRRLDHGS 936 (1090)
Q Consensus 890 ~~~~i~~~~~~f~g~~-el~wi~d~-------~~l~vF~~p~~~~~a~~~l~~~~ 936 (1090)
.+.+|..+..+|+.-. .+..+.|. -+.+.|.++..|+.||+.|++..
T Consensus 22 t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~ 76 (99)
T 2div_A 22 DENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKP 76 (99)
T ss_dssp CHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSE
T ss_pred CHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCc
Confidence 4566777777786323 44444453 36788999999999999887643
No 163
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=29.70 E-value=1.1e+02 Score=27.08 Aligned_cols=52 Identities=12% Similarity=0.256 Sum_probs=36.9
Q ss_pred cchhhhHHHHhhcCeeeEEEecCCceEEEecChhhHHHHHHhhcCccccccEEE
Q 001378 890 RESDISALVLRFGGECELVWLNDKNALAVFSDPARAATATRRLDHGSVYYGAVV 943 (1090)
Q Consensus 890 ~~~~i~~~~~~f~g~~el~wi~d~~~l~vF~~p~~~~~a~~~l~~~~~~~~~~~ 943 (1090)
.+.+|..+..+| |..+-..|.-.-+.+.|.++..|..||+.|++.. +.|..+
T Consensus 36 t~~~L~~~F~~~-G~v~~v~i~~g~afV~f~~~~~A~~Ai~~l~g~~-~~g~~l 87 (97)
T 2xnq_A 36 SKEDLFRIFSPY-GHIMQINIKNAFGFIQFDNPQSVRDAIEXESQEM-NFGKKL 87 (97)
T ss_dssp CHHHHHHHHGGG-SCEEEEEECSSEEEEEESSHHHHHHHHHHHTTSE-ETTEEC
T ss_pred CHHHHHHHHHhc-CCEEEEEEeCCEEEEEECCHHHHHHHHHHcCCCE-ECCEEE
Confidence 345666666667 4555555666667888999999999999987654 335554
No 164
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=29.30 E-value=1.8e+02 Score=27.16 Aligned_cols=59 Identities=19% Similarity=0.254 Sum_probs=38.8
Q ss_pred EEecCcc---cchhhhHHHHhhcCeee-EEEecCC-------ceEEEecChhhHHHHHHhhcCccccccEEE
Q 001378 883 VSFLDLP---RESDISALVLRFGGECE-LVWLNDK-------NALAVFSDPARAATATRRLDHGSVYYGAVV 943 (1090)
Q Consensus 883 v~~~dl~---~~~~i~~~~~~f~g~~e-l~wi~d~-------~~l~vF~~p~~~~~a~~~l~~~~~~~~~~~ 943 (1090)
|-+.+|+ .+.+|..+..+|+ +.+ +..+.|. -+.+.|.++..|+.||+.|.+.. +.|..+
T Consensus 45 l~V~nLp~~~~~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g~~l 114 (139)
T 1u6f_A 45 LMVNYIPTTVDEVQLRQLFERYG-PIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFN-ILNKRL 114 (139)
T ss_dssp EEEESCSTTCCHHHHHHHHHHHS-CEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEE-CSSCEE
T ss_pred EEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCE-ECCeEE
Confidence 4444553 4567777777785 443 3343342 36788999999999999987655 446555
No 165
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=29.12 E-value=14 Score=38.03 Aligned_cols=46 Identities=26% Similarity=0.677 Sum_probs=31.6
Q ss_pred eEeeecccccccCceeeCCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCCcc
Q 001378 113 ECMICYDMVKRSAPIWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQSV 172 (1090)
Q Consensus 113 eC~IC~~~i~~~~~vWsC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~~ 172 (1090)
.|.||-.. ..+=-|..|-.+||+.|+.- +... .....|.||.|...
T Consensus 4 ~C~~C~~~----g~ll~Cd~C~~~~H~~Cl~p----~l~~------~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 4 ICRVCQKP----GDLVMCNQCEFCFHLDCHLP----ALQD------VPGEEWSCSLCHVL 49 (189)
T ss_dssp CBTTTCCC----SSCCCCTTTCCBCCSTTSTT----CCSS------CCCTTCCTTTTSCS
T ss_pred cCccCCCC----CceeECCCCCchhccccCCC----Cccc------CCCCCCCCcCccCC
Confidence 47777633 35677999999999999731 1111 12458999999865
No 166
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=28.71 E-value=1e+02 Score=29.69 Aligned_cols=59 Identities=19% Similarity=0.232 Sum_probs=38.5
Q ss_pred EEecCcc---cchhhhHHHHhhcCee-eEEEecCC-------ceEEEecChhhHHHHHHhhcCccccccEEE
Q 001378 883 VSFLDLP---RESDISALVLRFGGEC-ELVWLNDK-------NALAVFSDPARAATATRRLDHGSVYYGAVV 943 (1090)
Q Consensus 883 v~~~dl~---~~~~i~~~~~~f~g~~-el~wi~d~-------~~l~vF~~p~~~~~a~~~l~~~~~~~~~~~ 943 (1090)
|-+.+|+ .+.+|..+..+|+ .. .+.++.|. -+.+.|.++.-|+.||+.|+... +.|..+
T Consensus 42 l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~-~~g~~l 111 (156)
T 1h2v_Z 42 LYVGNLSFYTTEEQIYELFSKSG-DIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTR-LDDRII 111 (156)
T ss_dssp EEEESCCTTCCHHHHHHHHGGGS-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSE-ETTEEC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCE-ECCeEE
Confidence 4444553 4466777776775 44 34444442 36788999999999999997544 456655
No 167
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.54 E-value=1.4e+02 Score=25.86 Aligned_cols=48 Identities=15% Similarity=0.151 Sum_probs=33.4
Q ss_pred cchhhhHHHHhhcCeeeE-EEecCC-c--eEEEecChhhHHHHHHhhcCccc
Q 001378 890 RESDISALVLRFGGECEL-VWLNDK-N--ALAVFSDPARAATATRRLDHGSV 937 (1090)
Q Consensus 890 ~~~~i~~~~~~f~g~~el-~wi~d~-~--~l~vF~~p~~~~~a~~~l~~~~~ 937 (1090)
.+.+|..+..+||.--.+ ..+.|. + +.+.|.++..|+.||+.|.+...
T Consensus 28 t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~ 79 (96)
T 2e44_A 28 QWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQL 79 (96)
T ss_dssp CHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBC
T ss_pred CHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEE
Confidence 456777777778533234 234443 3 88999999999999998876543
No 168
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=28.30 E-value=1.9e+02 Score=25.50 Aligned_cols=52 Identities=19% Similarity=0.358 Sum_probs=34.9
Q ss_pred cchhhhHHHHhhcCee-eEEEecCC-----ceEEEecChhhHHHHHHhhcCccccccEEE
Q 001378 890 RESDISALVLRFGGEC-ELVWLNDK-----NALAVFSDPARAATATRRLDHGSVYYGAVV 943 (1090)
Q Consensus 890 ~~~~i~~~~~~f~g~~-el~wi~d~-----~~l~vF~~p~~~~~a~~~l~~~~~~~~~~~ 943 (1090)
.+.+|..+..+|+ .. .+..+.|. -+.+.|.++..|+.||+.|++.. +.|-.+
T Consensus 28 t~~~l~~~f~~~G-~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g~~l 85 (103)
T 2cq3_A 28 RDPDLRQMFGQFG-KILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTV-VEGRKI 85 (103)
T ss_dssp CHHHHHHHGGGTS-CEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCE-ETTEEC
T ss_pred CHHHHHHHHHhcC-CeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCE-ECCEEE
Confidence 4456666666674 44 34444442 47788999999999999987655 446555
No 169
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.18 E-value=1.5e+02 Score=26.07 Aligned_cols=29 Identities=21% Similarity=0.304 Sum_probs=23.0
Q ss_pred ceEEEecChhhHHHHHHhhcCccccccEEE
Q 001378 914 NALAVFSDPARAATATRRLDHGSVYYGAVV 943 (1090)
Q Consensus 914 ~~l~vF~~p~~~~~a~~~l~~~~~~~~~~~ 943 (1090)
-+.+.|.++.-|+.||+.|++.. +.|..+
T Consensus 56 ~afV~f~~~~~A~~A~~~l~g~~-~~g~~l 84 (102)
T 2fc8_A 56 FGFVDFNSEEDAKAAKEAMEDGE-IDGNKV 84 (102)
T ss_dssp EEEEECSSHHHHHHHHHHHTTCE-ETTEEC
T ss_pred EEEEEECCHHHHHHHHHHhCCCe-ECCeEE
Confidence 36788999999999999998754 456655
No 170
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=27.89 E-value=1.4e+02 Score=27.44 Aligned_cols=63 Identities=21% Similarity=0.193 Sum_probs=41.4
Q ss_pred CceEEEecCcc---cchhhhHHHHhhcCee-eEEEecCC------ceEEEecChhhHHHHHHhhcCccccccEEE
Q 001378 879 PRLVVSFLDLP---RESDISALVLRFGGEC-ELVWLNDK------NALAVFSDPARAATATRRLDHGSVYYGAVV 943 (1090)
Q Consensus 879 ~~~~v~~~dl~---~~~~i~~~~~~f~g~~-el~wi~d~------~~l~vF~~p~~~~~a~~~l~~~~~~~~~~~ 943 (1090)
+..-|.+.+|+ .+.+|..+..+|| .. .+..+.|. -+.+.|.++..|+.||+.|++. .+.|-.+
T Consensus 34 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~-~~~g~~l 106 (124)
T 2kt5_A 34 TGAKLLVSNLDFGVSDADIQELFAEFG-TLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGV-PLDGRPM 106 (124)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHHHTTS-CCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTE-ESSSCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCC-EECCcEE
Confidence 33445555664 4456777776775 44 34444442 4778999999999999999865 4456555
No 171
>3lns_A Benzaldehyde dehydrogenase; oxidoreductase, NADP+, class 3 aldehyde dehyd adduct, covalent catalysis, mandelate racemase pathway; HET: ZBZ NAP; 2.50A {Pseudomonas putida} PDB: 3lv1_A*
Probab=27.87 E-value=1.8e+02 Score=33.51 Aligned_cols=56 Identities=20% Similarity=0.214 Sum_probs=35.0
Q ss_pred CCCCcCcccccCCceEEEecCcccchhhhHHHHhhcCeeeEEEecCCceEEEec-ChhhHHHHHHhhcCcccc
Q 001378 867 HAPVFDPLVDMDPRLVVSFLDLPRESDISALVLRFGGECELVWLNDKNALAVFS-DPARAATATRRLDHGSVY 938 (1090)
Q Consensus 867 ~~~~fna~v~~d~~~~v~~~dl~~~~~i~~~~~~f~g~~el~wi~d~~~l~vF~-~p~~~~~a~~~l~~~~~~ 938 (1090)
..|.|-|++ .++.++|++-+.++..-..+|+ -..+||+ |..++....++|+.|.++
T Consensus 356 ~eEiFGPVl-----~v~~~~~~deAi~~aN~~~~~g-----------L~a~v~t~d~~~a~~~~~~l~aG~v~ 412 (457)
T 3lns_A 356 SEELFGPIL-----PVLEFDSVRTAIDQVNKHHPKP-----------LAVYVFGKDMDVAKGIINQIQSGDAQ 412 (457)
T ss_dssp SSCCCSSEE-----EEEEESCHHHHHHHHHHHSCSC-----------SEEEEECSCHHHHHHHHHTSCCSEEE
T ss_pred cCcccCcEE-----EEEEeCCHHHHHHHHHcCCCCC-----------eEEEEECCCHHHHHHHHHhCCcceEE
Confidence 446777775 3577788743333222201232 3457887 567778888899988887
No 172
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.80 E-value=84 Score=27.94 Aligned_cols=52 Identities=17% Similarity=0.302 Sum_probs=36.8
Q ss_pred cchhhhHHHHhhcCeeeEEEecCC-------ceEEEecChhhHHHHHHhhcCccccccEEE
Q 001378 890 RESDISALVLRFGGECELVWLNDK-------NALAVFSDPARAATATRRLDHGSVYYGAVV 943 (1090)
Q Consensus 890 ~~~~i~~~~~~f~g~~el~wi~d~-------~~l~vF~~p~~~~~a~~~l~~~~~~~~~~~ 943 (1090)
.+.+|..+..+|+.=-.+..+.|. -+.+.|.++.-|+.||+. ++..+.|..+
T Consensus 29 t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~--~~~~~~g~~l 87 (105)
T 2dh8_A 29 TQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS--RPHTLDGRNI 87 (105)
T ss_dssp CHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH--CSEEETTEEE
T ss_pred CHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh--CCCeECCEEE
Confidence 445677777677532244455453 367889999999999998 7777878777
No 173
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=27.78 E-value=1.1e+02 Score=28.21 Aligned_cols=52 Identities=27% Similarity=0.398 Sum_probs=35.0
Q ss_pred cchhhhHHHHhhcCeeeEEE-ecCCc-------eEEEecChhhHHHHHHhhcCccccccEEE
Q 001378 890 RESDISALVLRFGGECELVW-LNDKN-------ALAVFSDPARAATATRRLDHGSVYYGAVV 943 (1090)
Q Consensus 890 ~~~~i~~~~~~f~g~~el~w-i~d~~-------~l~vF~~p~~~~~a~~~l~~~~~~~~~~~ 943 (1090)
.+.+|..+..+|| ..+-.. +.|.. +.+.|.++..|+.||+.|++... .|-.+
T Consensus 19 te~~L~~~F~~~G-~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~-~gr~i 78 (110)
T 3s8s_A 19 RETFLKDMCRKYG-EVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSV-MGNII 78 (110)
T ss_dssp CHHHHHHHHTTTS-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE-TTEEC
T ss_pred CHHHHHHHHHhcC-CeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEE-CCeEE
Confidence 4556666666674 544333 33433 66889999999999999976654 46665
No 174
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=27.69 E-value=1.1e+02 Score=28.04 Aligned_cols=65 Identities=22% Similarity=0.285 Sum_probs=43.9
Q ss_pred CCceEEEecCccc----chhhhHHHHhhcCeeeEEEec-CC-ceEEEecChhhHHHHHHhhcCc-cccccEEE
Q 001378 878 DPRLVVSFLDLPR----ESDISALVLRFGGECELVWLN-DK-NALAVFSDPARAATATRRLDHG-SVYYGAVV 943 (1090)
Q Consensus 878 d~~~~v~~~dl~~----~~~i~~~~~~f~g~~el~wi~-d~-~~l~vF~~p~~~~~a~~~l~~~-~~~~~~~~ 943 (1090)
+|.-.|.+.+|+. +.+|..+..+| |...-.+|- ++ -+.+.|.++.-|+.|++.|+.. -.+.|-.+
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~f-G~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 84 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPF-GVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPV 84 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGG-SCEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhc-CCEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEE
Confidence 3555666677755 35566666667 456555554 54 4778899999999999998753 34566655
No 175
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=27.66 E-value=1e+02 Score=27.25 Aligned_cols=56 Identities=25% Similarity=0.189 Sum_probs=36.6
Q ss_pred EEecCcc---cchhhhHHHHhhcCeeeEEEecCC------ceEEEecChhhHHHHHHhhcCcccc
Q 001378 883 VSFLDLP---RESDISALVLRFGGECELVWLNDK------NALAVFSDPARAATATRRLDHGSVY 938 (1090)
Q Consensus 883 v~~~dl~---~~~~i~~~~~~f~g~~el~wi~d~------~~l~vF~~p~~~~~a~~~l~~~~~~ 938 (1090)
|-+.+|+ .+.+|..+..+|+.=-.+..+.|. -+.+.|.++.-|+.||+.|++....
T Consensus 18 l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 82 (105)
T 2dnh_A 18 LFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTM 82 (105)
T ss_dssp EEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccC
Confidence 3344443 445666776667532234444453 3678899999999999999876655
No 176
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=27.65 E-value=1.2e+02 Score=27.17 Aligned_cols=53 Identities=19% Similarity=0.254 Sum_probs=35.6
Q ss_pred cchhhhHHHHhhcCeeeEEEec-CC-------ceEEEecChhhHHHHHHhhcC-----ccccccEEE
Q 001378 890 RESDISALVLRFGGECELVWLN-DK-------NALAVFSDPARAATATRRLDH-----GSVYYGAVV 943 (1090)
Q Consensus 890 ~~~~i~~~~~~f~g~~el~wi~-d~-------~~l~vF~~p~~~~~a~~~l~~-----~~~~~~~~~ 943 (1090)
.+.+|..+..+|+ ..+-..|. |. -+.+.|.++.-|+.||+.|+. +..+.|-.+
T Consensus 28 t~~~l~~~F~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l 93 (111)
T 1x4h_A 28 EEEALGEVLQQFG-DLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQL 93 (111)
T ss_dssp CHHHHHHHHHTTS-CEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEE
T ss_pred CHHHHHHHHHhcC-CeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEE
Confidence 4566777777775 44433332 42 377889999999999999983 444555555
No 177
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=27.65 E-value=1.1e+02 Score=28.35 Aligned_cols=59 Identities=19% Similarity=0.275 Sum_probs=37.9
Q ss_pred EEecCcc---cchhhhHHHHhhcCeee-EEEecC-------CceEEEecChhhHHHHHHhhcCccccccEEE
Q 001378 883 VSFLDLP---RESDISALVLRFGGECE-LVWLND-------KNALAVFSDPARAATATRRLDHGSVYYGAVV 943 (1090)
Q Consensus 883 v~~~dl~---~~~~i~~~~~~f~g~~e-l~wi~d-------~~~l~vF~~p~~~~~a~~~l~~~~~~~~~~~ 943 (1090)
|-+.+|+ .+.+|..+..+|+ ..+ +..+.| .-+.+.|.++..|+.||+.|++.. +.|-.+
T Consensus 66 l~v~nlp~~~~~~~l~~~f~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g~~l 135 (140)
T 2ku7_A 66 LYVGGLAEEVDDKVLHAAFIPFG-DITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESE-LFGRTI 135 (140)
T ss_dssp EEEECCCTTCCHHHHHHHHGGGS-CEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEE-ETTEEE
T ss_pred EEEEeCCCCCCHHHHHHHHHhcC-CEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCE-ECCEEE
Confidence 3444553 4456777776775 443 444334 237788999999999999987643 446555
No 178
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=27.32 E-value=94 Score=26.40 Aligned_cols=52 Identities=19% Similarity=0.349 Sum_probs=34.8
Q ss_pred cchhhhHHHHhhcCeee-EEEecC--------CceEEEecChhhHHHHHHhhcCccccccEEE
Q 001378 890 RESDISALVLRFGGECE-LVWLND--------KNALAVFSDPARAATATRRLDHGSVYYGAVV 943 (1090)
Q Consensus 890 ~~~~i~~~~~~f~g~~e-l~wi~d--------~~~l~vF~~p~~~~~a~~~l~~~~~~~~~~~ 943 (1090)
.+.+|..+..+|| ..+ +..+.| .-+.+.|.++.-|+.|++.|++.. +.|-.+
T Consensus 17 t~~~l~~~F~~~G-~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g~~l 77 (88)
T 4a8x_A 17 TKDHIMEIFSTYG-KIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQ-IDGQEI 77 (88)
T ss_dssp CHHHHHHHHHTTS-CEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCE-ETTEEC
T ss_pred CHHHHHHHHHhCC-CEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCe-ECCeEE
Confidence 4456777776775 443 333222 247789999999999999987654 446555
No 179
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=27.04 E-value=1.1e+02 Score=27.76 Aligned_cols=52 Identities=15% Similarity=0.158 Sum_probs=34.7
Q ss_pred cchhhhHHHHhhcCeee-EEEecCC----ceEEEecChhhHHHHHHhhcCccccccEEE
Q 001378 890 RESDISALVLRFGGECE-LVWLNDK----NALAVFSDPARAATATRRLDHGSVYYGAVV 943 (1090)
Q Consensus 890 ~~~~i~~~~~~f~g~~e-l~wi~d~----~~l~vF~~p~~~~~a~~~l~~~~~~~~~~~ 943 (1090)
.+.+|..+...|| ..+ +.++.|. -+.+.|.++..|+.||+.|++.. +.|-.+
T Consensus 21 t~~~l~~~F~~~G-~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g~~l 77 (115)
T 3lqv_A 21 TAEEMYDIFGKYG-PIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFN-VSNRYL 77 (115)
T ss_dssp CHHHHHHHHHTTS-CEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCB-SSSCBC
T ss_pred CHHHHHHHHHhcC-CeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCE-ECCeEE
Confidence 4456777776775 443 4444432 47899999999999999996554 445444
No 180
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=26.73 E-value=1.2e+02 Score=26.71 Aligned_cols=48 Identities=10% Similarity=0.214 Sum_probs=34.5
Q ss_pred cchhhhHHHHhhcCeeeEEEecCCceEEEecChhhHHHHHHhhcCcccc
Q 001378 890 RESDISALVLRFGGECELVWLNDKNALAVFSDPARAATATRRLDHGSVY 938 (1090)
Q Consensus 890 ~~~~i~~~~~~f~g~~el~wi~d~~~l~vF~~p~~~~~a~~~l~~~~~~ 938 (1090)
.+.+|..+..+| |..+-..|.-.-+.+.|.++..|+.||+.|++....
T Consensus 24 t~~~l~~~F~~~-G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~ 71 (96)
T 2kvi_A 24 SKEDLFRIFSPY-GHIMQINIKNAFGFIQFDNPQSVRDAIECESQEMNF 71 (96)
T ss_dssp CHHHHHHHHTTT-CCCCEEEEETTEEEEEESCHHHHHHHHHHHTCSSCB
T ss_pred CHHHHHHHHHhc-CCEEEEEEeCCEEEEEECCHHHHHHHHHHcCCCeeC
Confidence 345566666666 455555555667788999999999999998876543
No 181
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=26.59 E-value=1.4e+02 Score=25.75 Aligned_cols=59 Identities=25% Similarity=0.318 Sum_probs=38.2
Q ss_pred EEecCcc---cchhhhHHHHhhcCeeeEEEe-cCC------ceEEEecChhhHHHHHHhhcCccccccEEE
Q 001378 883 VSFLDLP---RESDISALVLRFGGECELVWL-NDK------NALAVFSDPARAATATRRLDHGSVYYGAVV 943 (1090)
Q Consensus 883 v~~~dl~---~~~~i~~~~~~f~g~~el~wi-~d~------~~l~vF~~p~~~~~a~~~l~~~~~~~~~~~ 943 (1090)
|-+.+|+ .+.+|..+..+|+ ..+-..| .|. -+.+.|.++..|+.||+.|++.. +.|-.+
T Consensus 19 l~v~nlp~~~~~~~l~~~F~~~G-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g~~l 87 (95)
T 2ywk_A 19 VFVGNLEARVREEILYELFLQAG-PLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIR-LYGRPI 87 (95)
T ss_dssp EEEECCCTTCCHHHHHHHHGGGS-CEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCE-ETTEEC
T ss_pred EEEECCCCCCCHHHHHHHHHhcC-CEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCE-ECCCEE
Confidence 3344443 4456777776674 4443333 343 36788999999999999998655 446555
No 182
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=26.47 E-value=1.3e+02 Score=27.24 Aligned_cols=60 Identities=20% Similarity=0.243 Sum_probs=39.2
Q ss_pred EEEecCcc---cchhhhHHHHhhcCeeeEEEecCCceEEEecChhhHHHHHHhhcCccccccEEE
Q 001378 882 VVSFLDLP---RESDISALVLRFGGECELVWLNDKNALAVFSDPARAATATRRLDHGSVYYGAVV 943 (1090)
Q Consensus 882 ~v~~~dl~---~~~~i~~~~~~f~g~~el~wi~d~~~l~vF~~p~~~~~a~~~l~~~~~~~~~~~ 943 (1090)
-|-+.+|+ .+.+|..+..+|| ..+-..|.-.-+.+.|.++..|+.|++.|.+... .|-.+
T Consensus 33 ~l~V~nLp~~~t~~~L~~~F~~~G-~i~~v~i~kg~afV~f~~~~~A~~Ai~~l~g~~~-~g~~l 95 (108)
T 2jvo_A 33 RLFVRPFPLDVQESELNEIFGPFG-PMKEVKILNGFAFVEFEEAESAAKAIEEVHGKSF-ANQPL 95 (108)
T ss_dssp EEEECSSCTTCCHHHHHHHHTTTS-CCCEEEEETTEEEEECSSHHHHHHHHHHHTTCEE-TTEEC
T ss_pred EEEEECCCCCCCHHHHHHHHHhcC-CEEEEEEECCEEEEEECCHHHHHHHHHHcCCCEE-CCeEE
Confidence 34455554 3456666666675 4433333356677889999999999999976654 45554
No 183
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.43 E-value=1.2e+02 Score=26.63 Aligned_cols=59 Identities=14% Similarity=0.302 Sum_probs=37.5
Q ss_pred EEecCcc---cchhhhHHHHhhcCeee-EEEecCC------ceEEEecChhhHHHHHHhhcCccccccEEE
Q 001378 883 VSFLDLP---RESDISALVLRFGGECE-LVWLNDK------NALAVFSDPARAATATRRLDHGSVYYGAVV 943 (1090)
Q Consensus 883 v~~~dl~---~~~~i~~~~~~f~g~~e-l~wi~d~------~~l~vF~~p~~~~~a~~~l~~~~~~~~~~~ 943 (1090)
|.+.+|+ .+.+|..+..+|+ ..+ +..+.|. -+.+.|.++..|+.||+.|++.. +.|..+
T Consensus 20 l~v~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g~~l 88 (100)
T 2do4_A 20 LFISGLPFSCTKEELEEICKAHG-TVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMT-IKENII 88 (100)
T ss_dssp EEEESCCTTCCHHHHHHHHTTTS-CEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEE-SSSCEE
T ss_pred EEEeCCCCCCCHHHHHHHHHhCC-CeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCE-ECCEEE
Confidence 3344553 4456666666674 443 3333343 37788999999999999998643 445555
No 184
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=26.39 E-value=1.3e+02 Score=26.29 Aligned_cols=53 Identities=25% Similarity=0.233 Sum_probs=35.6
Q ss_pred cchhhhHHHHhhcCeeeEEEecCC-------ceEEEecChhhHHHHHHhhcCccccccEEE
Q 001378 890 RESDISALVLRFGGECELVWLNDK-------NALAVFSDPARAATATRRLDHGSVYYGAVV 943 (1090)
Q Consensus 890 ~~~~i~~~~~~f~g~~el~wi~d~-------~~l~vF~~p~~~~~a~~~l~~~~~~~~~~~ 943 (1090)
.+.+|..+..+||.=-.+..+.|. -+.+.|.++..|+.|++.|++.. +.|-.+
T Consensus 15 t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~-~~g~~l 74 (96)
T 2x1f_A 15 TEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQ-LGSRFL 74 (96)
T ss_dssp CHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCE-ETTEEC
T ss_pred CHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCe-ECCeEE
Confidence 456677777778532234444442 37788999999999999997654 446554
No 185
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=26.36 E-value=1.4e+02 Score=25.06 Aligned_cols=59 Identities=14% Similarity=0.124 Sum_probs=36.9
Q ss_pred EEecCcc---cchhhhHHHHhhcCee-eEEEecCC-------ceEEEecChhhHHHHHHhhcCccccccEEE
Q 001378 883 VSFLDLP---RESDISALVLRFGGEC-ELVWLNDK-------NALAVFSDPARAATATRRLDHGSVYYGAVV 943 (1090)
Q Consensus 883 v~~~dl~---~~~~i~~~~~~f~g~~-el~wi~d~-------~~l~vF~~p~~~~~a~~~l~~~~~~~~~~~ 943 (1090)
|-+.+|+ .+.+|..+..+|| .. .+..+.|. -+.+.|.++..|+.|++.|++.. +.|-.+
T Consensus 4 l~V~nlp~~~t~~~l~~~f~~~G-~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~-~~g~~l 73 (83)
T 3md1_A 4 LFVGDLNVNVDDETLRNAFKDFP-SYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQD-LNGRPL 73 (83)
T ss_dssp EEEECCCTTCCHHHHHHHHTTST-TEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCE-ETTEEC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcC-CeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCe-eCCcEE
Confidence 3344554 3455666665664 44 34444342 26789999999999999997554 446555
No 186
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=26.29 E-value=18 Score=33.97 Aligned_cols=33 Identities=33% Similarity=0.705 Sum_probs=24.0
Q ss_pred HHhccCcceEeeec-ccccc-cCceeeCCCCceee
Q 001378 105 DKLMKSKVECMICY-DMVKR-SAPIWSCSSCFSIF 137 (1090)
Q Consensus 105 e~l~~~~yeC~IC~-~~i~~-~~~vWsC~~C~~vf 137 (1090)
|..++..|.|+.|- ..|+| ..-||.|..|-.+|
T Consensus 30 E~~q~aky~CpfCgk~~vKR~a~GIW~C~kCg~~~ 64 (103)
T 4a17_Y 30 EITQHAKYGCPFCGKVAVKRAAVGIWKCKPCKKII 64 (103)
T ss_dssp HHHHHSCEECTTTCCEEEEEEETTEEEETTTTEEE
T ss_pred HHHhhcCCCCCCCCCceeeecCcceEEcCCCCCEE
Confidence 44557899999994 44555 44599999996654
No 187
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=26.22 E-value=1.5e+02 Score=25.20 Aligned_cols=51 Identities=20% Similarity=0.318 Sum_probs=33.5
Q ss_pred cchhhhHHHHhhcCee-eEEEecCC-------ceEEEecChhhHHHHHHhhcCccccccEEE
Q 001378 890 RESDISALVLRFGGEC-ELVWLNDK-------NALAVFSDPARAATATRRLDHGSVYYGAVV 943 (1090)
Q Consensus 890 ~~~~i~~~~~~f~g~~-el~wi~d~-------~~l~vF~~p~~~~~a~~~l~~~~~~~~~~~ 943 (1090)
.+.+|..+..+|| .. .+.++.|. -+.+.|.++.-|+.||+. ++..+.|-.+
T Consensus 24 t~~~l~~~F~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~~g~~i 82 (87)
T 3s7r_A 24 SKKDLKDYFTKFG-EVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ--KEHRLDGRVI 82 (87)
T ss_dssp CHHHHHHHHTTTS-CEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS--SCEEETTEEE
T ss_pred CHHHHHHHHHhCC-CEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh--CCCEECCEEE
Confidence 4456666666674 44 34444453 267889999999999965 3345777666
No 188
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=26.22 E-value=12 Score=31.53 Aligned_cols=55 Identities=22% Similarity=0.437 Sum_probs=37.2
Q ss_pred CcceEeeecccccccCceeeCCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCCccc
Q 001378 110 SKVECMICYDMVKRSAPIWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQSVQ 173 (1090)
Q Consensus 110 ~~yeC~IC~~~i~~~~~vWsC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~~~ 173 (1090)
+..-|.||-........+=.|..|-.=||+.||.-- ... ......|.||.|....
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~------~~~---~~~~~~~~C~~C~~k~ 59 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKIT------PAR---AEHIKQYKCPSCSNKS 59 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCC------TTG---GGGCSSCCCHHHHTTT
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcC------hhH---hcCCCcEECCCCcCcC
Confidence 345588997766555566689999999999998321 110 0113589999997653
No 189
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=26.21 E-value=52 Score=33.74 Aligned_cols=48 Identities=10% Similarity=0.086 Sum_probs=37.8
Q ss_pred CcceEeeecccccccCceeeCCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCCcccc
Q 001378 110 SKVECMICYDMVKRSAPIWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQSVQL 174 (1090)
Q Consensus 110 ~~yeC~IC~~~i~~~~~vWsC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~~~~ 174 (1090)
..+.|+||.+-+. +||-. .|-++|-..||.+|..... . .||-|+....
T Consensus 105 ~~f~CPI~~elm~--DPV~~--~~Ghtfer~~I~~~l~~~~------------~-tcP~t~~~l~ 152 (179)
T 2f42_A 105 DYLCGKISFELMR--EPCIT--PSGITYDRKDIEEHLQRVG------------H-FDPVTRSPLT 152 (179)
T ss_dssp GGGBCTTTCSBCS--SEEEC--TTSCEEEHHHHHHHHHHTC------------S-BCTTTCCBCC
T ss_pred HhhcccCccccCC--CCeEC--CCCCEECHHHHHHHHHhCC------------C-CCCCCcCCCC
Confidence 3689999998876 67776 4889999999999997521 2 5999987654
No 190
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.52 E-value=82 Score=29.70 Aligned_cols=31 Identities=19% Similarity=0.131 Sum_probs=26.5
Q ss_pred hcCeeeEEEecCCceEEEecChhhHHHHHHh
Q 001378 901 FGGECELVWLNDKNALAVFSDPARAATATRR 931 (1090)
Q Consensus 901 f~g~~el~wi~d~~~l~vF~~p~~~~~a~~~ 931 (1090)
.||+.+..+.....|++.|.++.-+++.|.+
T Consensus 36 GGG~V~~v~~~~~~AvItF~d~~va~rVL~k 66 (104)
T 2dhx_A 36 GGGPVLSWQRLGCGGVLTFREPADAERVLAQ 66 (104)
T ss_dssp CCCCEEEEEEETTEEEEEESSHHHHHHHHTC
T ss_pred CCceeeEEEEcCCcEEEEEcChHHHHHHhcC
Confidence 4588877777779999999999999999987
No 191
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=25.36 E-value=1e+02 Score=27.72 Aligned_cols=59 Identities=20% Similarity=0.335 Sum_probs=37.9
Q ss_pred EEecCcc---cchhhhHHHHhhcCeee---------EEEecCC-------ceEEEecChhhHHHHHHhhcCccccccEEE
Q 001378 883 VSFLDLP---RESDISALVLRFGGECE---------LVWLNDK-------NALAVFSDPARAATATRRLDHGSVYYGAVV 943 (1090)
Q Consensus 883 v~~~dl~---~~~~i~~~~~~f~g~~e---------l~wi~d~-------~~l~vF~~p~~~~~a~~~l~~~~~~~~~~~ 943 (1090)
|.+.+|+ .+.+|..+..+|+ ..+ +..+.|. -+.+.|.++..|+.||+.|++.. +.|-.+
T Consensus 18 l~V~nLp~~~t~~~l~~~F~~~G-~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~-~~g~~l 95 (113)
T 2cpe_A 18 IYVQGLNDSVTLDDLADFFKQCG-VVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD-FQGSKL 95 (113)
T ss_dssp EEEECCCTTCCHHHHHHHHTTTS-CBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE-ETTEEC
T ss_pred EEEcCCCCCCCHHHHHHHHHhcC-CEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc-cCCCEE
Confidence 3344443 3455666666664 443 4444442 47788999999999999998655 446655
No 192
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=25.23 E-value=1.3e+02 Score=26.55 Aligned_cols=53 Identities=19% Similarity=0.231 Sum_probs=34.9
Q ss_pred EEecCcc---cchhhhHHHHhhcCeee-EEEecCC-------ceEEEecChhhHHHHHHhhcCcc
Q 001378 883 VSFLDLP---RESDISALVLRFGGECE-LVWLNDK-------NALAVFSDPARAATATRRLDHGS 936 (1090)
Q Consensus 883 v~~~dl~---~~~~i~~~~~~f~g~~e-l~wi~d~-------~~l~vF~~p~~~~~a~~~l~~~~ 936 (1090)
|-+.+|+ .+.+|..+..+|| ..+ +..+.|. -+.+.|.++..|+.||+.|.+..
T Consensus 26 l~V~nlp~~~t~~~l~~~f~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 89 (106)
T 1p27_B 26 LFVTGVHEEATEEDIHDKFAEYG-EIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQD 89 (106)
T ss_dssp EEEECCCTTCCHHHHHHHHGGGS-CEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCB
T ss_pred EEEeCCCCCCCHHHHHHHHhccC-CeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCE
Confidence 4444554 4456777776775 443 3333342 26788999999999999987653
No 193
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=25.07 E-value=1.2e+02 Score=28.86 Aligned_cols=50 Identities=28% Similarity=0.416 Sum_probs=35.0
Q ss_pred cchhhhHHHHhhcCeee-EEEecCCc------eEEEecChhhHHHHHHhhcCcccccc
Q 001378 890 RESDISALVLRFGGECE-LVWLNDKN------ALAVFSDPARAATATRRLDHGSVYYG 940 (1090)
Q Consensus 890 ~~~~i~~~~~~f~g~~e-l~wi~d~~------~l~vF~~p~~~~~a~~~l~~~~~~~~ 940 (1090)
.+.+|..+..+|| ..+ +..+.|.+ +.+.|.++.-|..||+.|++...+.|
T Consensus 108 t~~~l~~~F~~~G-~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g 164 (175)
T 3nmr_A 108 TENDIRVMFSSFG-QIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEG 164 (175)
T ss_dssp CHHHHHHHHGGGS-CEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTT
T ss_pred CHHHHHHHHHhCC-CEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCC
Confidence 3456667766675 443 33333433 78999999999999999998877643
No 194
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=24.96 E-value=80 Score=27.41 Aligned_cols=53 Identities=17% Similarity=0.237 Sum_probs=34.4
Q ss_pred cchhhhHHHHhhcC-ee-eEEEecCC-------ceEEEecChhhHHHHHHhhcCccccccEEE
Q 001378 890 RESDISALVLRFGG-EC-ELVWLNDK-------NALAVFSDPARAATATRRLDHGSVYYGAVV 943 (1090)
Q Consensus 890 ~~~~i~~~~~~f~g-~~-el~wi~d~-------~~l~vF~~p~~~~~a~~~l~~~~~~~~~~~ 943 (1090)
.+.+|..+..+||. .. .+..+.|. -+.+.|.++.-|+.||+.|++.. +.|-.+
T Consensus 14 t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~-~~gr~i 75 (90)
T 3p5t_L 14 TDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRE-LHGQNP 75 (90)
T ss_dssp CHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSC-SSSCCC
T ss_pred CHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCe-eCCEEE
Confidence 45667777777851 33 44444453 26688999999999999997654 445444
No 195
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=24.90 E-value=1.3e+02 Score=26.98 Aligned_cols=59 Identities=19% Similarity=0.297 Sum_probs=38.3
Q ss_pred EEecCcc---cchhhhHHHHhhcCeee-EEEecCC-------ceEEEecChhhHHHHHHhhcCccccccEEE
Q 001378 883 VSFLDLP---RESDISALVLRFGGECE-LVWLNDK-------NALAVFSDPARAATATRRLDHGSVYYGAVV 943 (1090)
Q Consensus 883 v~~~dl~---~~~~i~~~~~~f~g~~e-l~wi~d~-------~~l~vF~~p~~~~~a~~~l~~~~~~~~~~~ 943 (1090)
|-+.+|+ .+.+|..+..+|| ..+ +.++.|. -+.+.|.++.-|+.||+.|.+.. +.|-.+
T Consensus 29 l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~-~~g~~l 98 (110)
T 1oo0_B 29 LFVTSIHEEAQEDEIQEKFCDYG-EIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAE-IMGQTI 98 (110)
T ss_dssp EEEESCCTTCCHHHHHHHHGGGS-CEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCE-ETTEEC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcC-CEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCE-ECCcEE
Confidence 4444554 4456777776774 554 4443442 37788999999999999987653 445544
No 196
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=24.83 E-value=1.1e+02 Score=26.15 Aligned_cols=51 Identities=16% Similarity=0.380 Sum_probs=33.5
Q ss_pred cchhhhHHHHhhcCeee-EEEecCC-------ceEEEecChhhHHHHHHhhcCccccccEEE
Q 001378 890 RESDISALVLRFGGECE-LVWLNDK-------NALAVFSDPARAATATRRLDHGSVYYGAVV 943 (1090)
Q Consensus 890 ~~~~i~~~~~~f~g~~e-l~wi~d~-------~~l~vF~~p~~~~~a~~~l~~~~~~~~~~~ 943 (1090)
.+.+|..+..+|| ..+ +..+.|. -+.+.|.++. |+.|++.|++.. +.|-.+
T Consensus 14 t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~-~~g~~l 72 (90)
T 2ki2_A 14 TSEQVKELFSQFG-KVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTD-FMGRTI 72 (90)
T ss_dssp SHHHHTTTHHHHT-CCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSC-CSSSSC
T ss_pred CHHHHHHHHHhcC-CEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCE-ECCeEE
Confidence 4566777777775 443 3333342 3778899999 999999987655 335444
No 197
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.76 E-value=1.4e+02 Score=26.17 Aligned_cols=52 Identities=19% Similarity=0.312 Sum_probs=34.4
Q ss_pred cchhhhHHHHhhcCeee-EEEecC-------CceEEEecChhhHHHHHHhhcCccccccEEE
Q 001378 890 RESDISALVLRFGGECE-LVWLND-------KNALAVFSDPARAATATRRLDHGSVYYGAVV 943 (1090)
Q Consensus 890 ~~~~i~~~~~~f~g~~e-l~wi~d-------~~~l~vF~~p~~~~~a~~~l~~~~~~~~~~~ 943 (1090)
.+.+|..+..+|+ ..+ +..+.| .-+.+.|.++.-|+.||+.|++.. +.|..+
T Consensus 25 t~~~l~~~f~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g~~l 84 (102)
T 2cqb_A 25 DDKVLHAAFIPFG-DITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESE-LFGRTI 84 (102)
T ss_dssp CHHHHHHHHTTTS-CCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEE-ETTEEE
T ss_pred CHHHHHHHhhccC-CEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCE-ECCcEE
Confidence 4456666666674 443 333334 137788999999999999996544 446665
No 198
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.69 E-value=16 Score=33.49 Aligned_cols=50 Identities=24% Similarity=0.620 Sum_probs=35.4
Q ss_pred ceEeeecccccccCceeeCCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCCcc
Q 001378 112 VECMICYDMVKRSAPIWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQSV 172 (1090)
Q Consensus 112 yeC~IC~~~i~~~~~vWsC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~~ 172 (1090)
..|.||-..- ....+=-|..|-..||+.|+. -+... .....|.||.|...
T Consensus 17 ~~C~vC~~~~-~~~~ll~CD~C~~~~H~~Cl~----Ppl~~------~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 17 YICQVCSRGD-EDDKLLFCDGCDDNYHIFCLL----PPLPE------IPRGIWRCPKCILA 66 (92)
T ss_dssp CCCSSSCCSG-GGGGCEECTTTCCEECSSSSS----SCCSS------CCSSCCCCHHHHHH
T ss_pred CCCccCCCcC-CCCCEEEcCCCCchhccccCC----CCccc------CCCCCcCCccCcCc
Confidence 4589997653 345688999999999999983 11111 11358999999764
No 199
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.65 E-value=1.2e+02 Score=28.20 Aligned_cols=45 Identities=20% Similarity=0.393 Sum_probs=32.6
Q ss_pred HhhcCeeeEEEecCCceEEEecChhhHHHHHHhhcCccccccEEEEe
Q 001378 899 LRFGGECELVWLNDKNALAVFSDPARAATATRRLDHGSVYYGAVVVQ 945 (1090)
Q Consensus 899 ~~f~g~~el~wi~d~~~l~vF~~p~~~~~a~~~l~~~~~~~~~~~~~ 945 (1090)
.+|||. +.-+-..-+-++|.+..-|..|+++|++-..|-=.++|+
T Consensus 35 ~~yGG~--Vl~VtgG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~ 79 (96)
T 2diu_A 35 DNCGGK--VLSITGCSAILRFINQDSAERAQKRMENEDVFGNRIIVS 79 (96)
T ss_dssp HTTTCC--EEECCTTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred HHcCCe--eEEEecCEEEEEECCHHHHHHHHHHhcCCccCCceEEEE
Confidence 345445 333344778899999999999999999999883333353
No 200
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=24.48 E-value=1.4e+02 Score=29.25 Aligned_cols=60 Identities=15% Similarity=0.181 Sum_probs=39.9
Q ss_pred EEecCcc---cchhhhHHHHhhcC-ee-eEEEecCC-------ceEEEecChhhHHHHHHhhcCccccccEEE
Q 001378 883 VSFLDLP---RESDISALVLRFGG-EC-ELVWLNDK-------NALAVFSDPARAATATRRLDHGSVYYGAVV 943 (1090)
Q Consensus 883 v~~~dl~---~~~~i~~~~~~f~g-~~-el~wi~d~-------~~l~vF~~p~~~~~a~~~l~~~~~~~~~~~ 943 (1090)
|-+.+|+ .+.+|..+..+||. +. ++..+.|. -+.+.|.++..|+.||+.|++.. +.|-.+
T Consensus 58 lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~-~~Gr~l 129 (156)
T 3n9u_C 58 VYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKV-LNGEKV 129 (156)
T ss_dssp EEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCE-ETTEEC
T ss_pred EEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCE-ECCeEe
Confidence 4444553 45678888877862 44 44444453 26688999999999999997654 456665
No 201
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.36 E-value=1.8e+02 Score=25.57 Aligned_cols=51 Identities=14% Similarity=0.145 Sum_probs=33.5
Q ss_pred cchhhhHHHHhhcCeeeEEEecCC-------ceEEEecChhhHHHHHHhhcCccccccEEE
Q 001378 890 RESDISALVLRFGGECELVWLNDK-------NALAVFSDPARAATATRRLDHGSVYYGAVV 943 (1090)
Q Consensus 890 ~~~~i~~~~~~f~g~~el~wi~d~-------~~l~vF~~p~~~~~a~~~l~~~~~~~~~~~ 943 (1090)
.+.+|..+..+|+.=-.+..+.|. -+.+.|.++..|+.||+. +..+.|-.+
T Consensus 28 t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~---~~~~~g~~l 85 (103)
T 2cqg_A 28 TEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ---RHMIDGRWC 85 (103)
T ss_dssp CHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS---CEEETTEEE
T ss_pred CHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc---CCeeCCeEE
Confidence 445677777677532244444453 277889999999999983 446666655
No 202
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=24.30 E-value=32 Score=31.66 Aligned_cols=47 Identities=23% Similarity=0.733 Sum_probs=30.7
Q ss_pred ceEeeecccccccCceeeCCC--Cc-eeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCCccc
Q 001378 112 VECMICYDMVKRSAPIWSCSS--CF-SIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQSVQ 173 (1090)
Q Consensus 112 yeC~IC~~~i~~~~~vWsC~~--C~-~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~~~ 173 (1090)
.-| ||-..-. ..+=-|.. |- .-||+.||. .... ....|.||.|....
T Consensus 37 ~yC-iC~~~~~--g~MI~CD~~dC~~~WfH~~CVg---l~~~---------p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 37 TYC-LCHQVSY--GEMIGCDNPDCSIEWFHFACVG---LTTK---------PRGKWFCPRCSQES 86 (91)
T ss_dssp BCS-TTCCBCC--SCCCCCSCSSCSCCCCCSTTTT---CSSC---------CCSSCCCTTTCCCC
T ss_pred cEE-ECCCCCC--CCEeEecCCCCCCCCEecccCC---cCcC---------CCCCEECcCccCcC
Confidence 345 7755432 35667888 76 689999996 1110 13579999998654
No 203
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.10 E-value=69 Score=27.26 Aligned_cols=53 Identities=21% Similarity=0.308 Sum_probs=32.9
Q ss_pred EEecCcc---cchhhhHHHHhhcCee-eEEEecCC-------ceEEEecChhhHHHHHHhhcCcc
Q 001378 883 VSFLDLP---RESDISALVLRFGGEC-ELVWLNDK-------NALAVFSDPARAATATRRLDHGS 936 (1090)
Q Consensus 883 v~~~dl~---~~~~i~~~~~~f~g~~-el~wi~d~-------~~l~vF~~p~~~~~a~~~l~~~~ 936 (1090)
|-+.+|+ .+.+|..+..+|+ .. .+..+.|. -+.+.|.++..|+.|++.|++..
T Consensus 8 l~v~nlp~~~t~~~l~~~f~~~G-~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 71 (85)
T 1x4e_A 8 LYIRGLQPGTTDQDLVKLCQPYG-KIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASG 71 (85)
T ss_dssp EEEESCCTTCCHHHHHTTSTTTS-CEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHT
T ss_pred EEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCe
Confidence 3344453 3345555555564 44 34444442 27788999999999999887543
No 204
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=23.95 E-value=27 Score=32.22 Aligned_cols=33 Identities=33% Similarity=0.652 Sum_probs=23.7
Q ss_pred HHhccCcceEeeecc-cccc-cCceeeCCCCceee
Q 001378 105 DKLMKSKVECMICYD-MVKR-SAPIWSCSSCFSIF 137 (1090)
Q Consensus 105 e~l~~~~yeC~IC~~-~i~~-~~~vWsC~~C~~vf 137 (1090)
|..++..|.|+.|-. .|+| ..-||.|..|-.+|
T Consensus 30 e~~q~~ky~CpfCgk~~vkR~a~GIW~C~~Cg~~~ 64 (92)
T 3iz5_m 30 EVSQHSKYFCEFCGKFAVKRKAVGIWGCKDCGKVK 64 (92)
T ss_dssp HHHHHSCBCCTTTCSSCBEEEETTEEECSSSCCEE
T ss_pred HHHHhccccCcccCCCeeEecCcceEEcCCCCCEE
Confidence 445668999999943 4544 44599999997654
No 205
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.81 E-value=1.6e+02 Score=25.99 Aligned_cols=52 Identities=8% Similarity=0.026 Sum_probs=34.5
Q ss_pred cchhhhHHHHh-hcCeeeEEEecCC------ceEEEecChhhHHHHHHhhcCccccccE
Q 001378 890 RESDISALVLR-FGGECELVWLNDK------NALAVFSDPARAATATRRLDHGSVYYGA 941 (1090)
Q Consensus 890 ~~~~i~~~~~~-f~g~~el~wi~d~------~~l~vF~~p~~~~~a~~~l~~~~~~~~~ 941 (1090)
.+.+|..+..+ |+.=-.+..+.|. -+.+.|.++..|+.||+.|++...+.|-
T Consensus 22 t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~ 80 (104)
T 2dhg_A 22 DDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSK 80 (104)
T ss_dssp CHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSS
T ss_pred CHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCE
Confidence 45677788777 7532233344342 2668899999999999998876534343
No 206
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=23.66 E-value=1.2e+02 Score=26.43 Aligned_cols=52 Identities=15% Similarity=0.265 Sum_probs=34.5
Q ss_pred cchhhhHHHHhhcCeee-EEEecCC----------ceEEEecChhhHHHHHHhhcCccccccEEE
Q 001378 890 RESDISALVLRFGGECE-LVWLNDK----------NALAVFSDPARAATATRRLDHGSVYYGAVV 943 (1090)
Q Consensus 890 ~~~~i~~~~~~f~g~~e-l~wi~d~----------~~l~vF~~p~~~~~a~~~l~~~~~~~~~~~ 943 (1090)
.+.+|..+..+|+ ..+ +..+.|. -+.+.|.++.-|+.||+.|++.. +.|-.+
T Consensus 18 t~~~l~~~F~~~G-~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g~~l 80 (98)
T 2cpf_A 18 TEETLKGVFSKVG-AIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHT-VDGHKL 80 (98)
T ss_dssp CHHHHHHHHHTTS-CEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCE-ETTEEC
T ss_pred CHHHHHHHHHhcC-CeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCe-eCCeEE
Confidence 4456777776775 443 3333222 36788999999999999987754 446555
No 207
>2ope_A PILX; type IV pilin, minor pilin, bacterial pathogenesis, adhesion, aggregation, filament, cell adhesion; 2.40A {Neisseria meningitidis} PDB: 2opd_A
Probab=23.60 E-value=36 Score=33.00 Aligned_cols=60 Identities=20% Similarity=0.226 Sum_probs=45.5
Q ss_pred HHHHHHhChhH-HHHHHHHHHHHHhccccCCccccceEecCCCChhhHHHHHHHHHHcCCceeecCCCCCceEEEEeCCC
Q 001378 769 LADLYRRDPKW-VLSVEERCKFLVLGKNRGSTNALKVHVFCPMLKDKRDAVRLIAERWKLAVNPAGWEPKRFIVVHVTPK 847 (1090)
Q Consensus 769 Ll~~~~~~~~~-~~~vE~~L~~fv~~~~~~~~~~~k~~~f~PM~~~kR~fIHeLAe~ygL~S~S~d~EP~R~VvV~kt~~ 847 (1090)
|..+..+||.| -..|+..|+.||..+. |++ +||+.|-+..+-.+.+-.|.+.++.+++
T Consensus 23 lk~~~vknP~~~~~~lk~kl~~Fi~~yk--------------~~~-------~ia~KYtfS~~~vn~~~~ray~L~a~Pk 81 (128)
T 2ope_A 23 SKQFILKNPLDDNQTIKSKLERFVSGYK--------------MNP-------KIAEKYNVSVHFVNKEKPRAYSLVGVPK 81 (128)
T ss_dssp HHHHTTTCSSCCHHHHHHHHHHHHHHCC--------------CCH-------HHHTTEEEEEEESCTTCTTSEEEEEEEC
T ss_pred HHHHHhcCcchhhhhHHHHHHhhhcccc--------------cCh-------hhhhceeeeEEeecCCCceEEEEEEecc
Confidence 55566678888 7889999999998742 332 7899999999888887667777777765
Q ss_pred CC
Q 001378 848 SK 849 (1090)
Q Consensus 848 Sk 849 (1090)
..
T Consensus 82 a~ 83 (128)
T 2ope_A 82 TG 83 (128)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 208
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=23.43 E-value=1.2e+02 Score=31.75 Aligned_cols=63 Identities=21% Similarity=0.251 Sum_probs=42.4
Q ss_pred eEEEecCcc---cchhhhHHHHhhcCeeeEEEecCC--ceEEEecChhhHHHHHHhhcCccccccEEE
Q 001378 881 LVVSFLDLP---RESDISALVLRFGGECELVWLNDK--NALAVFSDPARAATATRRLDHGSVYYGAVV 943 (1090)
Q Consensus 881 ~~v~~~dl~---~~~~i~~~~~~f~g~~el~wi~d~--~~l~vF~~p~~~~~a~~~l~~~~~~~~~~~ 943 (1090)
-.|.+.+|+ .+.+|..+..+|+.=-.+..+.++ .+.+.|.++.-|+.||+.|++.....|-.+
T Consensus 208 ~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l 275 (282)
T 3pgw_A 208 HILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAM 275 (282)
T ss_pred CEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCCCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEE
Confidence 345555554 445677777677533345555554 588999999999999999988665535443
No 209
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=23.41 E-value=1.9e+02 Score=26.13 Aligned_cols=55 Identities=15% Similarity=0.214 Sum_probs=35.8
Q ss_pred cchhhh---HHHHhhcCee-eEEEecCC----------ceEEEecChhhHHHHHHhhcCccccccEEE-EeC
Q 001378 890 RESDIS---ALVLRFGGEC-ELVWLNDK----------NALAVFSDPARAATATRRLDHGSVYYGAVV-VQN 946 (1090)
Q Consensus 890 ~~~~i~---~~~~~f~g~~-el~wi~d~----------~~l~vF~~p~~~~~a~~~l~~~~~~~~~~~-~~~ 946 (1090)
.+.+|. .+..+|+ .. .+..+.|. -+.+.|.++..|+.||+.|++.. +.|-.+ |.-
T Consensus 28 ~~~~l~~~~~~F~~~G-~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~-~~gr~l~V~~ 97 (111)
T 2cpi_A 28 ADPEVLKRPEYFGKFG-KIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV-VDGRTLKASL 97 (111)
T ss_dssp CCHHHHHSTTTTTTTS-CEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEE-ETTEEEEEES
T ss_pred CHHHHHHHHHHhhccC-CEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCE-ECCEEEEEEe
Confidence 445555 4544564 44 34444443 46688999999999999987665 557766 533
No 210
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=23.17 E-value=1.7e+02 Score=26.36 Aligned_cols=51 Identities=18% Similarity=0.273 Sum_probs=33.2
Q ss_pred cchhhhHHHHhhcCeee-EEEecCC-------ceEEEecChhhHHHHHHhhcCccccccEEE
Q 001378 890 RESDISALVLRFGGECE-LVWLNDK-------NALAVFSDPARAATATRRLDHGSVYYGAVV 943 (1090)
Q Consensus 890 ~~~~i~~~~~~f~g~~e-l~wi~d~-------~~l~vF~~p~~~~~a~~~l~~~~~~~~~~~ 943 (1090)
.+.+|..+..+|+ ..+ +..+.|. -+.+.|.++..|+.|| .|++ ..+.|-.+
T Consensus 38 t~~~l~~~F~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g-~~~~g~~l 96 (114)
T 2cq4_A 38 RPRDLEDFFSAVG-KVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTG-QRLLGVPI 96 (114)
T ss_dssp CHHHHHHHHTTTS-CEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTT-EEETTEEE
T ss_pred CHHHHHHHHHhCC-CEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCC-CEeCCeEE
Confidence 4456666666674 443 4444332 3778899999999999 7754 44556555
No 211
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=23.06 E-value=2e+02 Score=24.56 Aligned_cols=60 Identities=15% Similarity=0.117 Sum_probs=37.6
Q ss_pred EEEecCcc---cchhhhHHHHhhcCeee-EEEecC-----CceEEEecChhhHHHHHHhhcCccccccEEE
Q 001378 882 VVSFLDLP---RESDISALVLRFGGECE-LVWLND-----KNALAVFSDPARAATATRRLDHGSVYYGAVV 943 (1090)
Q Consensus 882 ~v~~~dl~---~~~~i~~~~~~f~g~~e-l~wi~d-----~~~l~vF~~p~~~~~a~~~l~~~~~~~~~~~ 943 (1090)
-|.+.+|+ .+.+|..+..+|+ ..+ +..+.+ .-+.+.|.++..|+.||+.|++.. +.|-.+
T Consensus 10 ~l~V~nlp~~~t~~~l~~~f~~~G-~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~-~~g~~l 78 (92)
T 2dgv_A 10 QIFVRNLPFDFTWKMLKDKFNECG-HVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMK-LSGREI 78 (92)
T ss_dssp EEEECSCCTTCCHHHHHHHHHTTS-CEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCC-BTTBCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcC-CEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCE-ECCcEE
Confidence 34455554 3456777776775 443 333333 236788999999999999988655 334433
No 212
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=23.03 E-value=29 Score=31.49 Aligned_cols=33 Identities=39% Similarity=0.845 Sum_probs=24.0
Q ss_pred HHhccCcceEeeecc-cccc-cCceeeCCCCceee
Q 001378 105 DKLMKSKVECMICYD-MVKR-SAPIWSCSSCFSIF 137 (1090)
Q Consensus 105 e~l~~~~yeC~IC~~-~i~~-~~~vWsC~~C~~vf 137 (1090)
|..++..|.|+.|-. .|+| ..-||.|..|-.+|
T Consensus 29 e~~q~~ky~CpfCGk~~vkR~a~GIW~C~kCg~~~ 63 (83)
T 3j21_i 29 EAKMRQKHTCPVCGRKAVKRISTGIWQCQKCGATF 63 (83)
T ss_dssp HHHHHSCBCCSSSCSSCEEEEETTEEEETTTCCEE
T ss_pred HHHhhcccCCCCCCCceeEecCcCeEEcCCCCCEE
Confidence 345568999999954 3555 44599999997655
No 213
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=22.95 E-value=1e+02 Score=27.64 Aligned_cols=54 Identities=15% Similarity=0.166 Sum_probs=35.9
Q ss_pred cchhhhHHHHhhcC-e-eeEEEecCCc-------eEEEecChhhHHHHHHhhcCcc---ccccEEE
Q 001378 890 RESDISALVLRFGG-E-CELVWLNDKN-------ALAVFSDPARAATATRRLDHGS---VYYGAVV 943 (1090)
Q Consensus 890 ~~~~i~~~~~~f~g-~-~el~wi~d~~-------~l~vF~~p~~~~~a~~~l~~~~---~~~~~~~ 943 (1090)
.+.+|..+..+||. + -.+..+.|+. +-+.|.++.-|+.||+.|++.. ...|-.+
T Consensus 22 tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 22 VVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred CHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 45566666666752 2 2455555532 6688999999999999998764 2345444
No 214
>3sza_A Aldehyde dehydrogenase, dimeric NADP-preferring; ALDH, rossmann fold, oxidoreductase; 1.48A {Homo sapiens} SCOP: c.82.1.1 PDB: 3szb_A* 1ad3_A*
Probab=22.67 E-value=2.9e+02 Score=32.07 Aligned_cols=55 Identities=18% Similarity=0.209 Sum_probs=34.0
Q ss_pred CCCCcCcccccCCceEEEecCcccchhhhHHHHhhcCeeeEEEecCCceEEEecC-hhhHHHHHHhhcCcccc
Q 001378 867 HAPVFDPLVDMDPRLVVSFLDLPRESDISALVLRFGGECELVWLNDKNALAVFSD-PARAATATRRLDHGSVY 938 (1090)
Q Consensus 867 ~~~~fna~v~~d~~~~v~~~dl~~~~~i~~~~~~f~g~~el~wi~d~~~l~vF~~-p~~~~~a~~~l~~~~~~ 938 (1090)
..|.|-|++- ++.++|++-+.++..-. +|+ -..+||++ ..++...+++|+.|.++
T Consensus 348 ~eEiFGPVl~-----v~~~~~~deAi~~aN~~-~~g-----------Laa~v~t~d~~~a~~~~~~l~~G~V~ 403 (469)
T 3sza_A 348 QEEIFGPVLP-----IVCVRSLEEAIQFINQR-EKP-----------LALYMFSSNDKVIKKMIAETSSGGVA 403 (469)
T ss_dssp TSCCCSSEEE-----EEECSSHHHHHHHHHHS-CCC-----------SEEEEECSCHHHHHHHHHHCCCSEEE
T ss_pred hccccCCeEE-----EEecCCHHHHHHHHHcC-CCC-----------ceEEEECCCHHHHHHHHHhCCcceEE
Confidence 4567887753 56777774333322221 233 24577764 56677888899988887
No 215
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.57 E-value=2.7e+02 Score=24.82 Aligned_cols=52 Identities=13% Similarity=0.109 Sum_probs=34.6
Q ss_pred cchhhhHHHHhhcCeee-EEEecCC------ceEEEecChhhHHHHHHhhcCccccccEEE
Q 001378 890 RESDISALVLRFGGECE-LVWLNDK------NALAVFSDPARAATATRRLDHGSVYYGAVV 943 (1090)
Q Consensus 890 ~~~~i~~~~~~f~g~~e-l~wi~d~------~~l~vF~~p~~~~~a~~~l~~~~~~~~~~~ 943 (1090)
.+.+|..+..+|+ ..+ +..+.|. -+.+.|.++..|+.||+.|++... .|-.+
T Consensus 28 ~~~~l~~~f~~~G-~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g~~l 86 (114)
T 2do0_A 28 GWKKLKEVFSMAG-VVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLL-FDRPM 86 (114)
T ss_dssp CHHHHHHHHTTTS-CEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEE-TTEEC
T ss_pred CHHHHHHHHHhcC-CeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe-CCCEE
Confidence 4456666666674 443 3444443 367889999999999999976544 46555
No 216
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=22.13 E-value=1.8e+02 Score=25.71 Aligned_cols=60 Identities=17% Similarity=0.179 Sum_probs=37.6
Q ss_pred eEEEecCcc---cchhhhHHHHhhcCeeeEEEecCC-------ceEEEecChhhHHHHHHhhcCccccccEEE
Q 001378 881 LVVSFLDLP---RESDISALVLRFGGECELVWLNDK-------NALAVFSDPARAATATRRLDHGSVYYGAVV 943 (1090)
Q Consensus 881 ~~v~~~dl~---~~~~i~~~~~~f~g~~el~wi~d~-------~~l~vF~~p~~~~~a~~~l~~~~~~~~~~~ 943 (1090)
.-|-+.+|+ .+.+|..+..+| |--.+..+.|. -+.+.|.++..|+.|| .|++ ..+.|-.+
T Consensus 16 ~~l~V~nLp~~~t~~~l~~~F~~~-gi~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g-~~~~g~~l 85 (103)
T 2dng_A 16 YTAYVGNLPFNTVQGDIDAIFKDL-SIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDG-ALLGDRSL 85 (103)
T ss_dssp EEEEEESCCTTCCHHHHHHHTTTS-CEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTT-CEETTEEC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhC-CceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCC-CeECCeEE
Confidence 345555664 345566666667 42234444454 3678899999999999 7654 45556555
No 217
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=22.03 E-value=37 Score=27.44 Aligned_cols=37 Identities=16% Similarity=0.416 Sum_probs=22.8
Q ss_pred ceeeCCCCceeechhHHHHHhc-CCCCcchhhhccCCCCCCCCCCCccc
Q 001378 126 PIWSCSSCFSIFHLSCIKKWAR-APTSADLSAERSQGFNWRCPGCQSVQ 173 (1090)
Q Consensus 126 ~vWsC~~C~~vfHL~CikkWa~-~~~s~~~~~~~~~~~~WrCP~C~~~~ 173 (1090)
++|-|..|--||.-. . +++. .......|+||.|....
T Consensus 3 ~~y~C~vCGyvyd~~------~Gd~t~-----f~~lP~dw~CP~Cg~~k 40 (46)
T 6rxn_A 3 QKYVCNVCGYEYDPA------EHDNVP-----FDQLPDDWCCPVCGVSK 40 (46)
T ss_dssp CCEEETTTCCEECGG------GGTTCC-----GGGSCTTCBCTTTCCBG
T ss_pred CEEECCCCCeEEeCC------cCCCcc-----hhhCCCCCcCcCCCCcH
Confidence 478899998888741 1 0010 11224579999998753
No 218
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=21.64 E-value=2.2e+02 Score=25.69 Aligned_cols=61 Identities=20% Similarity=0.237 Sum_probs=38.0
Q ss_pred eEEEecCcc---cchhhhHHHHhhcCee-eEEEecCC-------ceEEEecChhhHHHHHHhhcCccccccEEE
Q 001378 881 LVVSFLDLP---RESDISALVLRFGGEC-ELVWLNDK-------NALAVFSDPARAATATRRLDHGSVYYGAVV 943 (1090)
Q Consensus 881 ~~v~~~dl~---~~~~i~~~~~~f~g~~-el~wi~d~-------~~l~vF~~p~~~~~a~~~l~~~~~~~~~~~ 943 (1090)
.-|-+.+|+ .+.+|..+..+|| .. .+..+.|. -+.+.|.++..|+.||+.|++.. +.|-.+
T Consensus 27 ~~l~V~nLp~~~te~~l~~~F~~~G-~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~-i~g~~l 98 (108)
T 2jrs_A 27 MRLYVGSLHFNITEDMLRGIFEPFG-RIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE-LAGRPM 98 (108)
T ss_dssp EEEEEECCCSSCCHHHHHHHHTTTS-CEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCC-SSSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCE-ECCEEE
Confidence 344455554 3456666666675 44 34444332 47788999999999999987644 334333
No 219
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.47 E-value=2.7e+02 Score=24.17 Aligned_cols=52 Identities=12% Similarity=0.115 Sum_probs=36.1
Q ss_pred cchhhhHHHHhhcCeeeEEEec--CCceEEEecChhhHHHHHHhhcCccccccEEE
Q 001378 890 RESDISALVLRFGGECELVWLN--DKNALAVFSDPARAATATRRLDHGSVYYGAVV 943 (1090)
Q Consensus 890 ~~~~i~~~~~~f~g~~el~wi~--d~~~l~vF~~p~~~~~a~~~l~~~~~~~~~~~ 943 (1090)
.+.+|..+..+|+ +.+-..|. ..-+.+.|.++..|+.||+.|++.. +.|-.+
T Consensus 26 t~~~l~~~F~~~G-~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~-~~g~~l 79 (97)
T 1x5p_A 26 TPTLLRGAFSPFG-NIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQ-VESVQL 79 (97)
T ss_dssp CHHHHHHHHTTTS-CEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEE-ETTEEE
T ss_pred CHHHHHHHHhhCC-CEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCe-ECCeEE
Confidence 4566777776775 55444444 3447788999999999999987664 346555
No 220
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=21.43 E-value=30 Score=31.37 Aligned_cols=59 Identities=19% Similarity=0.612 Sum_probs=40.1
Q ss_pred cceEeeecccccc-cCceeeCCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCCccccC
Q 001378 111 KVECMICYDMVKR-SAPIWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQSVQLT 175 (1090)
Q Consensus 111 ~yeC~IC~~~i~~-~~~vWsC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~~~~~ 175 (1090)
...|.||-..-.. ...|=-|..|-..||+.|+. -+.... ........|.|+.|......
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~----Ppl~~~--~~~~p~g~W~C~~C~~~~~~ 75 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHK----PQVTDK--EVNDPRLVWYCARCTRQMKR 75 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSS----SCCCHH--HHHCTTCCCCCHHHHHHHCC
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCC----Cccccc--ccCCCCCCeeCccccchhhh
Confidence 5679999876332 46799999999999999962 222110 00123568999999876543
No 221
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.27 E-value=1.1e+02 Score=28.99 Aligned_cols=61 Identities=28% Similarity=0.418 Sum_probs=39.3
Q ss_pred EEEecCcc---cchhhhHHHHhhcCee-eEEEecCCc-eEEEecChhhHHHHHHhhcC-ccccccEEE
Q 001378 882 VVSFLDLP---RESDISALVLRFGGEC-ELVWLNDKN-ALAVFSDPARAATATRRLDH-GSVYYGAVV 943 (1090)
Q Consensus 882 ~v~~~dl~---~~~~i~~~~~~f~g~~-el~wi~d~~-~l~vF~~p~~~~~a~~~l~~-~~~~~~~~~ 943 (1090)
.|-+.+|+ .+.+|..+..+|| .. .+..+.++. +.+.|.++.-|+.|++.|+. +..+.|-.+
T Consensus 33 ~LfVgNLp~~vte~dL~~lF~~fG-~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l 99 (119)
T 2ad9_A 33 VIHIRKLPIDVTEGEVISLGLPFG-KVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPI 99 (119)
T ss_dssp EEEEESCCTTCCHHHHHHHHTTTS-CCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcC-CEEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCceECCeEE
Confidence 34455554 4566777776675 44 344455654 66789999999999998874 344545444
No 222
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=21.23 E-value=1.4e+02 Score=29.08 Aligned_cols=52 Identities=21% Similarity=0.335 Sum_probs=35.2
Q ss_pred cchhhhHHHHhhcCee-eEEEecCC-------ceEEEecChhhHHHHHHhhcCccccccEEE
Q 001378 890 RESDISALVLRFGGEC-ELVWLNDK-------NALAVFSDPARAATATRRLDHGSVYYGAVV 943 (1090)
Q Consensus 890 ~~~~i~~~~~~f~g~~-el~wi~d~-------~~l~vF~~p~~~~~a~~~l~~~~~~~~~~~ 943 (1090)
.+.+|..+..+|| .. .+.++.+. -+.+.|.++.-|+.||+.|.+.. +.|-.+
T Consensus 85 t~~~L~~~F~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~-~~g~~l 144 (165)
T 1rk8_A 85 QEDEIQEKFCDYG-EIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAE-IMGQTI 144 (165)
T ss_dssp CHHHHHHHHGGGS-CEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCE-ETTEEC
T ss_pred CHHHHHHHhhcCC-CEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCE-ECCEEE
Confidence 4456777776775 44 44444452 36788999999999999997644 345544
No 223
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=21.18 E-value=1.4e+02 Score=26.32 Aligned_cols=53 Identities=17% Similarity=0.213 Sum_probs=35.1
Q ss_pred cchhhhHHHHhhcCeeeEEEecC-CceEEEecChhhHHHHHHhhcCccccccEEE
Q 001378 890 RESDISALVLRFGGECELVWLND-KNALAVFSDPARAATATRRLDHGSVYYGAVV 943 (1090)
Q Consensus 890 ~~~~i~~~~~~f~g~~el~wi~d-~~~l~vF~~p~~~~~a~~~l~~~~~~~~~~~ 943 (1090)
.+.+|..+..+||.=-.+.++.. .-+.+.|.++..|+.|++.|.+. .+.|..+
T Consensus 40 ~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~-~~~g~~l 93 (101)
T 2la4_A 40 TEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVALANF-PFQGRNL 93 (101)
T ss_dssp CHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTC-EETTEEC
T ss_pred CHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhCCC-eECCeEE
Confidence 45667777777853224444444 44667899999999999988754 3445444
No 224
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.02 E-value=1.4e+02 Score=27.19 Aligned_cols=50 Identities=20% Similarity=0.284 Sum_probs=34.0
Q ss_pred cchhhhHHHHhhcCeeeEEEecCC----------ceEEEecChhhHHHHHHhhcCccccccEEE
Q 001378 890 RESDISALVLRFGGECELVWLNDK----------NALAVFSDPARAATATRRLDHGSVYYGAVV 943 (1090)
Q Consensus 890 ~~~~i~~~~~~f~g~~el~wi~d~----------~~l~vF~~p~~~~~a~~~l~~~~~~~~~~~ 943 (1090)
.+.+|..+..+| |..+..++.+. -+.+.|.++.-|+.||+.|. .+.|..+
T Consensus 21 te~~L~~~F~~~-G~i~~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~---~~~G~~~ 80 (114)
T 2dnl_A 21 DEDEITASFRRF-GPLVVDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL---EEDGKLY 80 (114)
T ss_dssp CHHHHHHHTTTT-CCCCEECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE---EETTEEE
T ss_pred CHHHHHHHHHhc-CCEEEEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh---hcCCcEE
Confidence 445566666566 45567777642 25577999999999999883 2666666
No 225
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=20.97 E-value=90 Score=25.83 Aligned_cols=51 Identities=14% Similarity=0.143 Sum_probs=33.5
Q ss_pred cchhhhHHHHhhcCeeeEEEecCC-------ceEEEecChhhHHHHHHhhcCccccccEE
Q 001378 890 RESDISALVLRFGGECELVWLNDK-------NALAVFSDPARAATATRRLDHGSVYYGAV 942 (1090)
Q Consensus 890 ~~~~i~~~~~~f~g~~el~wi~d~-------~~l~vF~~p~~~~~a~~~l~~~~~~~~~~ 942 (1090)
.+.+|..+..+||.=-.+..+.|. -+.+.|.++..|+.||+.++ ..+.|-.
T Consensus 13 t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~--~~~~g~~ 70 (77)
T 1uaw_A 13 TQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR--HELDSKT 70 (77)
T ss_dssp CSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT--CCCSSCC
T ss_pred CHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC--CccCCEE
Confidence 345666666667532245555443 36788999999999999887 4454543
No 226
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=20.83 E-value=2.4e+02 Score=24.60 Aligned_cols=59 Identities=19% Similarity=0.282 Sum_probs=36.7
Q ss_pred eEEEecCcc---cchhhhHHHHhhcCeee---------EEEecCC-------ceEEEecChhhHHHHHHhhcCccccccE
Q 001378 881 LVVSFLDLP---RESDISALVLRFGGECE---------LVWLNDK-------NALAVFSDPARAATATRRLDHGSVYYGA 941 (1090)
Q Consensus 881 ~~v~~~dl~---~~~~i~~~~~~f~g~~e---------l~wi~d~-------~~l~vF~~p~~~~~a~~~l~~~~~~~~~ 941 (1090)
..|.+.+|+ .+.+|..+..+|| ..+ +..+.|. -+.+.|.++..|+.||+.|++.. +.|-
T Consensus 14 ~~l~V~nLp~~~t~~~l~~~F~~~G-~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~-~~g~ 91 (99)
T 2la6_A 14 NTIFVQGLGENVTIESVADYFKQIG-IIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE-FSGN 91 (99)
T ss_dssp SEEEEECCCSSCCHHHHHHHHTTTS-CBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB-SSSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhC-CEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE-eCCc
Confidence 345555554 3455666666665 332 3333342 36688999999999999987653 3343
No 227
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.82 E-value=1.5e+02 Score=26.06 Aligned_cols=59 Identities=12% Similarity=0.099 Sum_probs=34.7
Q ss_pred EEecCccc---chhhhHHHHhhcCeeeEEEecC----CceEEEecChhhHHHHHHhhcCccccccEEE
Q 001378 883 VSFLDLPR---ESDISALVLRFGGECELVWLND----KNALAVFSDPARAATATRRLDHGSVYYGAVV 943 (1090)
Q Consensus 883 v~~~dl~~---~~~i~~~~~~f~g~~el~wi~d----~~~l~vF~~p~~~~~a~~~l~~~~~~~~~~~ 943 (1090)
|-+.+|+. +.+|..+..+| |+..+....+ .-+.+.|.++.-|+.||+.|++.. +.|..+
T Consensus 18 l~V~nLp~~~t~~~l~~~F~~~-g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g~~l 83 (101)
T 2fc9_A 18 LVLSNLSYSATEETLQEVFEKA-TFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKRE-IEGRAI 83 (101)
T ss_dssp EEEESCCTTCCHHHHHHHCSSC-SEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEE-ETTEEE
T ss_pred EEEeCCCCCCCHHHHHHHHHhC-CEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCE-eCCeEE
Confidence 44445543 34444444344 3443332211 236788999999999999988644 446655
No 228
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=20.64 E-value=2.6e+02 Score=24.12 Aligned_cols=52 Identities=19% Similarity=0.387 Sum_probs=33.4
Q ss_pred cchhhh----HHHHhhcCeeeEEEec-----CCceEEEecChhhHHHHHHhhcCccccccEEE
Q 001378 890 RESDIS----ALVLRFGGECELVWLN-----DKNALAVFSDPARAATATRRLDHGSVYYGAVV 943 (1090)
Q Consensus 890 ~~~~i~----~~~~~f~g~~el~wi~-----d~~~l~vF~~p~~~~~a~~~l~~~~~~~~~~~ 943 (1090)
.+.+|. .+..+|| ..+-..+. -.-+.+.|.++..|+.|++.|++... .|-.+
T Consensus 21 ~~~~l~~~l~~~f~~~G-~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~-~g~~l 81 (97)
T 1nu4_A 21 KKDELKKSLHAIFSRFG-QILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPF-YDKPM 81 (97)
T ss_dssp CHHHHHHHHHHHHGGGS-CEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEE-TTEEC
T ss_pred CHHHHHHHHHHHHHhCC-CEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEE-CCcEE
Confidence 334555 5555564 44333333 24577899999999999999987554 45544
No 229
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=20.40 E-value=29 Score=32.51 Aligned_cols=53 Identities=17% Similarity=0.351 Sum_probs=30.9
Q ss_pred EeeecccccccCceeeCCCCceeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCCcc
Q 001378 114 CMICYDMVKRSAPIWSCSSCFSIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQSV 172 (1090)
Q Consensus 114 C~IC~~~i~~~~~vWsC~~C~~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~~ 172 (1090)
|.+|+..-...+.+=-|..|..+||..|+.--. ... .+......|.||.|...
T Consensus 62 c~~c~~~~~~~~~m~~C~~C~~~~H~~C~~~~~----~~~--~~~~~~~~~~C~~C~~~ 114 (117)
T 4bbq_A 62 VDQNEETQDFEKKLMECCICNEIVHPGCLQMDG----EGL--LNEELPNCWECPKCYQE 114 (117)
T ss_dssp BCCHHHHCCGGGSCEEETTTCCEECGGGCCSCC----CCE--ECSSSSSEEECTTTC--
T ss_pred ccccccccccCcceEEeeecCCeEECCCCCCCc----ccc--ccccCCCCeECCCCcCC
Confidence 444444434444556799999999999974211 111 11222447999999865
No 230
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=20.39 E-value=18 Score=30.38 Aligned_cols=42 Identities=24% Similarity=0.755 Sum_probs=28.1
Q ss_pred eecccccccCceeeCCC--Cc-eeechhHHHHHhcCCCCcchhhhccCCCCCCCCCCCc
Q 001378 116 ICYDMVKRSAPIWSCSS--CF-SIFHLSCIKKWARAPTSADLSAERSQGFNWRCPGCQS 171 (1090)
Q Consensus 116 IC~~~i~~~~~vWsC~~--C~-~vfHL~CikkWa~~~~s~~~~~~~~~~~~WrCP~C~~ 171 (1090)
||-..- ...+=.|.+ |- .-||+.||. .... ....|.||.|..
T Consensus 13 ~C~~~~--~g~mi~CD~~~C~~~wfH~~Cvg---l~~~---------p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 13 LCHQVS--YGEMIGCDNPDCPIEWFHFACVD---LTTK---------PKGKWFCPRCVQ 57 (59)
T ss_dssp TTTEEC--CSEEEECSCTTCSSCEEETGGGT---CSSC---------CSSCCCCHHHHC
T ss_pred ECCCCC--CCCeeEeeCCCCCCCCEecccCC---cccC---------CCCCEECcCccC
Confidence 675432 245777998 87 699999996 1111 124799999964
No 231
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.35 E-value=1.3e+02 Score=27.15 Aligned_cols=54 Identities=15% Similarity=0.315 Sum_probs=34.2
Q ss_pred EEecCcc---cchhhhHHHHhhcCeee-EEEecCCc------eEEEecChhhHHHHHHhhcCccc
Q 001378 883 VSFLDLP---RESDISALVLRFGGECE-LVWLNDKN------ALAVFSDPARAATATRRLDHGSV 937 (1090)
Q Consensus 883 v~~~dl~---~~~~i~~~~~~f~g~~e-l~wi~d~~------~l~vF~~p~~~~~a~~~l~~~~~ 937 (1090)
|.+.+|+ .+.+|..+..+|+ +.+ +..+.|.+ +.+.|.++..|+.||+.|++...
T Consensus 28 l~V~nlp~~~t~~~l~~~F~~~G-~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~ 91 (114)
T 1x5o_A 28 LYISNLPLSMDEQELENMLKPFG-QVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFI 91 (114)
T ss_dssp EEEESCCTTCCHHHHHHTTTTTS-CEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcC-CEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 4445554 3445556555564 443 33444533 66889999999999998876553
No 232
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.34 E-value=3.1e+02 Score=25.14 Aligned_cols=46 Identities=17% Similarity=0.324 Sum_probs=32.5
Q ss_pred HHHHhhc--CeeeEEEecCCceEEEecChhhHHHHHHhhcCccccccEEE
Q 001378 896 ALVLRFG--GECELVWLNDKNALAVFSDPARAATATRRLDHGSVYYGAVV 943 (1090)
Q Consensus 896 ~~~~~f~--g~~el~wi~d~~~l~vF~~p~~~~~a~~~l~~~~~~~~~~~ 943 (1090)
.|+..|. |+..++.+-.+.+-+.|.+..-|..||. |++..+. |-.+
T Consensus 31 ~L~~~F~~~G~Vi~vr~~~d~~fVtF~d~~sAlaAi~-mnG~~v~-Gr~L 78 (91)
T 2dnr_A 31 ELLQQFASFGEVILIRFVEDKMWVTFLEGSSALNVLS-LNGKELL-NRTI 78 (91)
T ss_dssp HHHHHHHTTCCEEEEEECSSSEEEEESSHHHHHHGGG-GTTCEET-TEEE
T ss_pred HHHHHHHhCCCeEEEEEecCCEEEEECChHHHHHHHh-cCCeEeC-CeEE
Confidence 3443444 5777777776667888889888889998 8877655 6555
No 233
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=20.18 E-value=1.8e+02 Score=25.38 Aligned_cols=52 Identities=19% Similarity=0.295 Sum_probs=34.0
Q ss_pred cchhhhHHHHhhcCeee-EEEecCCc-eEEEecChhhHHHHHHhhcCccccccEEE
Q 001378 890 RESDISALVLRFGGECE-LVWLNDKN-ALAVFSDPARAATATRRLDHGSVYYGAVV 943 (1090)
Q Consensus 890 ~~~~i~~~~~~f~g~~e-l~wi~d~~-~l~vF~~p~~~~~a~~~l~~~~~~~~~~~ 943 (1090)
.+.+|..+..+|+ ..+ +..+.++. +.+.|.++..|+.||+.|++.. +.|-.+
T Consensus 28 t~~~l~~~F~~~G-~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~-~~g~~l 81 (99)
T 2cpj_A 28 TEEEMRKLFEKYG-KAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMP-LRGKQL 81 (99)
T ss_dssp CHHHHHHHTSTTC-CCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCC-BTTBCC
T ss_pred CHHHHHHHHhhcC-CeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCE-eCCceE
Confidence 3455666665664 443 44444544 6677999999999999998765 445444
Done!