Query 001379
Match_columns 1090
No_of_seqs 25 out of 27
Neff 1.7
Searched_HMMs 29240
Date Tue Mar 26 01:04:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001379.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001379hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gga_A P55CDC, cell division c 81.9 2.9 0.0001 40.8 7.1 80 89-188 97-178 (420)
2 4ggc_A P55CDC, cell division c 70.1 16 0.00054 32.8 8.0 79 90-188 18-98 (318)
3 1k8k_C P40, ARP2/3 complex 41 59.1 26 0.0009 32.1 7.4 73 97-185 98-170 (372)
4 4h5i_A Guanine nucleotide-exch 59.0 36 0.0012 33.1 8.8 72 99-189 273-344 (365)
5 3k26_A Polycomb protein EED; W 57.9 30 0.001 31.4 7.5 71 99-185 289-363 (366)
6 2pm9_A Protein WEB1, protein t 57.3 16 0.00054 34.2 5.8 72 99-189 266-338 (416)
7 3jrp_A Fusion protein of prote 55.6 21 0.00073 32.5 6.2 34 153-186 53-86 (379)
8 3dwl_C Actin-related protein 2 55.3 22 0.00075 33.2 6.3 74 97-186 102-175 (377)
9 4ggc_A P55CDC, cell division c 55.3 12 0.00041 33.5 4.4 68 561-634 244-313 (318)
10 3mmy_A MRNA export factor; mRN 52.5 40 0.0014 30.5 7.4 72 98-187 42-116 (368)
11 3fm0_A Protein CIAO1; WDR39,SG 51.6 44 0.0015 31.8 7.9 36 153-189 301-336 (345)
12 3f3f_A Nucleoporin SEH1; struc 51.5 37 0.0013 30.0 6.9 37 153-189 55-91 (351)
13 1pgu_A Actin interacting prote 51.1 39 0.0013 33.4 7.6 71 98-187 21-96 (615)
14 3odt_A Protein DOA1; ubiquitin 50.4 45 0.0015 29.6 7.2 47 133-186 207-253 (313)
15 4aez_A CDC20, WD repeat-contai 49.2 50 0.0017 31.8 7.9 70 98-188 96-165 (401)
16 1k8k_C P40, ARP2/3 complex 41 48.4 34 0.0012 31.3 6.4 68 99-186 12-81 (372)
17 1sq9_A Antiviral protein SKI8; 48.3 40 0.0014 31.4 6.9 32 155-186 354-393 (397)
18 3dwl_C Actin-related protein 2 48.0 10 0.00035 35.4 2.9 71 98-188 14-86 (377)
19 3zwl_B Eukaryotic translation 47.7 35 0.0012 30.9 6.2 69 99-187 36-104 (369)
20 1gxr_A ESG1, transducin-like e 47.7 61 0.0021 29.0 7.8 70 98-187 144-213 (337)
21 3odt_A Protein DOA1; ubiquitin 45.9 51 0.0018 29.3 6.9 49 133-188 248-296 (313)
22 2aq5_A Coronin-1A; WD40 repeat 44.7 65 0.0022 30.8 7.9 71 98-187 84-162 (402)
23 3f3f_A Nucleoporin SEH1; struc 44.5 74 0.0025 28.1 7.7 35 153-187 108-142 (351)
24 1r5m_A SIR4-interacting protei 42.3 59 0.002 30.1 6.9 68 98-186 250-317 (425)
25 4a11_B DNA excision repair pro 42.1 60 0.002 30.0 6.9 35 153-189 332-366 (408)
26 1gxr_A ESG1, transducin-like e 41.7 59 0.002 29.1 6.7 72 99-187 55-127 (337)
27 4a11_B DNA excision repair pro 41.3 68 0.0023 29.6 7.2 75 98-187 46-130 (408)
28 3vl1_A 26S proteasome regulato 41.2 62 0.0021 30.5 7.0 70 98-187 142-211 (420)
29 3zwl_B Eukaryotic translation 38.6 82 0.0028 28.5 7.2 31 154-186 314-344 (369)
30 3k26_A Polycomb protein EED; W 38.1 70 0.0024 29.0 6.6 54 133-186 46-102 (366)
31 4gqb_B Methylosome protein 50; 37.3 74 0.0025 31.0 7.2 51 133-185 105-155 (344)
32 2pm7_B Protein transport prote 36.8 90 0.0031 28.9 7.4 35 153-187 202-237 (297)
33 4g56_B MGC81050 protein; prote 35.9 77 0.0026 30.6 7.0 38 154-192 310-347 (357)
34 3ow8_A WD repeat-containing pr 34.7 98 0.0034 29.4 7.4 68 99-186 210-277 (321)
35 1yfq_A Cell cycle arrest prote 34.4 79 0.0027 28.7 6.4 70 97-186 58-129 (342)
36 3jrp_A Fusion protein of prote 33.8 1.1E+02 0.0039 27.8 7.4 35 153-187 204-239 (379)
37 2pm7_B Protein transport prote 33.4 1.1E+02 0.0038 28.3 7.3 34 154-189 253-286 (297)
38 2pbi_B Guanine nucleotide-bind 32.9 96 0.0033 29.8 7.1 72 98-187 157-228 (354)
39 4ery_A WD repeat-containing pr 32.7 1.2E+02 0.0039 27.8 7.2 69 98-186 68-136 (312)
40 4aow_A Guanine nucleotide-bind 32.5 48 0.0017 29.9 4.7 32 153-185 36-67 (340)
41 2ynn_A Coatomer subunit beta'; 32.4 1.2E+02 0.0041 28.2 7.4 66 100-185 60-125 (304)
42 4e54_B DNA damage-binding prot 31.9 40 0.0014 33.1 4.3 31 155-186 119-149 (435)
43 3dw8_B Serine/threonine-protei 31.9 95 0.0032 29.5 6.7 33 156-188 94-126 (447)
44 1r5m_A SIR4-interacting protei 31.2 1.5E+02 0.0051 27.4 7.7 34 154-189 246-279 (425)
45 3ei3_B DNA damage-binding prot 30.8 84 0.0029 29.6 6.1 73 98-187 76-149 (383)
46 3mmy_A MRNA export factor; mRN 30.1 74 0.0025 28.7 5.4 54 559-613 275-328 (368)
47 4aow_A Guanine nucleotide-bind 28.8 59 0.002 29.4 4.5 30 154-185 305-334 (340)
48 3dw8_B Serine/threonine-protei 28.1 57 0.002 30.9 4.5 34 154-189 27-60 (447)
49 1yfq_A Cell cycle arrest prote 27.6 83 0.0028 28.5 5.3 37 151-189 7-43 (342)
50 2j04_B YDR362CP, TAU91; beta p 27.4 1E+02 0.0036 32.6 6.8 34 154-187 206-243 (524)
51 2g31_A Reticulon-4; NOGO, heli 26.5 27 0.00092 29.3 1.7 22 790-811 34-55 (60)
52 3bws_A Protein LP49; two-domai 26.4 1.5E+02 0.0051 28.2 7.1 47 132-185 382-429 (433)
53 3i2n_A WD repeat-containing pr 26.3 1.8E+02 0.0061 26.3 7.3 32 155-186 209-241 (357)
54 1sq9_A Antiviral protein SKI8; 26.0 69 0.0024 29.8 4.6 33 153-189 14-46 (397)
55 4g56_B MGC81050 protein; prote 25.2 89 0.0031 30.2 5.4 72 98-186 97-168 (357)
56 2xzm_R RACK1; ribosome, transl 24.6 1.7E+02 0.0057 27.6 7.0 30 155-186 309-338 (343)
57 1erj_A Transcriptional repress 24.5 1.8E+02 0.0061 28.2 7.3 31 154-186 255-285 (393)
58 3kkj_A Amine oxidase, flavin-c 24.2 10 0.00035 31.5 -1.2 32 296-340 7-38 (336)
59 3fm0_A Protein CIAO1; WDR39,SG 23.4 1.4E+02 0.0048 28.3 6.3 37 147-185 8-44 (345)
60 2ynn_A Coatomer subunit beta'; 23.4 84 0.0029 29.2 4.7 33 154-188 12-44 (304)
61 3bg1_A Protein SEC13 homolog; 23.2 92 0.0031 29.3 4.9 34 153-186 210-245 (316)
62 3iz6_a 40S ribosomal protein R 22.9 1.4E+02 0.0046 28.9 6.1 34 152-187 341-374 (380)
63 2aq5_A Coronin-1A; WD40 repeat 22.8 1.7E+02 0.0058 28.0 6.7 71 98-186 134-205 (402)
64 3ei3_B DNA damage-binding prot 22.2 98 0.0034 29.1 4.9 34 154-188 72-105 (383)
65 3bg1_A Protein SEC13 homolog; 22.0 1E+02 0.0034 29.0 4.9 32 155-188 262-293 (316)
66 2hes_X YDR267CP; beta-propelle 21.6 1.8E+02 0.0062 27.4 6.6 34 153-186 195-228 (330)
67 2xyi_A Probable histone-bindin 21.5 2.3E+02 0.0078 27.8 7.5 34 154-188 276-309 (430)
68 3iz6_a 40S ribosomal protein R 21.1 90 0.0031 30.1 4.5 59 560-618 301-362 (380)
69 2hes_X YDR267CP; beta-propelle 20.6 2.8E+02 0.0096 26.1 7.7 31 154-186 57-87 (330)
70 3i2n_A WD repeat-containing pr 20.5 1.8E+02 0.006 26.4 6.0 35 155-189 65-100 (357)
71 3mkq_A Coatomer beta'-subunit; 20.4 2.1E+02 0.0071 29.8 7.2 67 99-185 59-125 (814)
72 1pgu_A Actin interacting prote 20.3 1.3E+02 0.0043 29.8 5.4 30 153-185 582-611 (615)
No 1
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=81.91 E-value=2.9 Score=40.77 Aligned_cols=80 Identities=15% Similarity=0.360 Sum_probs=56.7
Q ss_pred cChhHhhhcc--chhhhhccccceeccccccccCCCCCCCCCceeeEEEecCCCCcceeEEEeecCCCCCceEEEEecCC
Q 001379 89 MSVPELCRNF--SAVAWCGKLNAIACASETCARIPSSNANTPFWIPIHIVIPERPTECAVFNVIADCPRDSVQFIEWSPT 166 (1090)
Q Consensus 89 msvpElcRnF--savawc~klN~iaca~eTCarip~S~~np~fwiPihIviPerPtE~avfnv~adsp~d~vq~ieWSp~ 166 (1090)
+..|+|...| +-|+|. +.|.||.+...+. +|...+--.-...+. .....+.|.++.|||.
T Consensus 97 l~ap~~~~d~y~~~l~wS-~~n~lAvgld~tV---------------~lWd~~tg~~~~~~~--~~~~~~~V~sv~fspd 158 (420)
T 4gga_A 97 LDAPEIRNDYYLNLVDWS-SGNVLAVALDNSV---------------YLWSASSGDILQLLQ--MEQPGEYISSVAWIKE 158 (420)
T ss_dssp EECTTCCCCTTCBCEEEC-TTSEEEEEETTEE---------------EEEETTTCCEEEEEE--CCSTTCCEEEEEECTT
T ss_pred EECCCCcccccceeEEEC-CCCEEEEEeCCEE---------------EEEECCCCCEEEEEE--ecCCCCcEEEEEECCC
Confidence 4568888877 568996 5699999876554 344443322222333 3456789999999996
Q ss_pred CCcceeEEEeccceEEEEecCC
Q 001379 167 SCPRALLIANFYGRVTIWTQPS 188 (1090)
Q Consensus 167 ~cpRALLiAnf~GRvtIWtQPs 188 (1090)
+ +-|+++..+|.|.||.-.+
T Consensus 159 g--~~lasgs~Dg~v~iWd~~~ 178 (420)
T 4gga_A 159 G--NYLAVGTSSAEVQLWDVQQ 178 (420)
T ss_dssp S--SEEEEEETTSCEEEEETTT
T ss_pred C--CEEEEEECCCeEEEEEcCC
Confidence 5 6789999999999997543
No 2
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=70.05 E-value=16 Score=32.78 Aligned_cols=79 Identities=15% Similarity=0.366 Sum_probs=54.9
Q ss_pred ChhHhhhcc--chhhhhccccceeccccccccCCCCCCCCCceeeEEEecCCCCcceeEEEeecCCCCCceEEEEecCCC
Q 001379 90 SVPELCRNF--SAVAWCGKLNAIACASETCARIPSSNANTPFWIPIHIVIPERPTECAVFNVIADCPRDSVQFIEWSPTS 167 (1090)
Q Consensus 90 svpElcRnF--savawc~klN~iaca~eTCarip~S~~np~fwiPihIviPerPtE~avfnv~adsp~d~vq~ieWSp~~ 167 (1090)
..|||-..| +.|+|- +.|.||.+.... |.|...+--+....|. .....+.|..+.|+|..
T Consensus 18 dap~~~~d~y~~~l~WS-~~~~lAvg~D~t---------------V~iWd~~tg~~~~~~~--~~~~~~~V~~v~~~~~~ 79 (318)
T 4ggc_A 18 DAPEIRNDYYLNLVDWS-SGNVLAVALDNS---------------VYLWSASSGDILQLLQ--MEQPGEYISSVAWIKEG 79 (318)
T ss_dssp ECTTCCCCTTCBCEEEC-TTSEEEEEETTE---------------EEEEETTTCCEEEEEE--CCSTTCCEEEEEECTTS
T ss_pred eCCCCcccccceEEEEC-CCCEEEEEeCCE---------------EEEEECCCCCEEEEEE--ecCCCCeEEEEEECCCC
Confidence 457765555 779995 568999875432 4455554433333333 34677889999999975
Q ss_pred CcceeEEEeccceEEEEecCC
Q 001379 168 CPRALLIANFYGRVTIWTQPS 188 (1090)
Q Consensus 168 cpRALLiAnf~GRvtIWtQPs 188 (1090)
+-|+.+-.+|.|.||.-.+
T Consensus 80 --~~l~sgs~Dg~v~iw~~~~ 98 (318)
T 4ggc_A 80 --NYLAVGTSSAEVQLWDVQQ 98 (318)
T ss_dssp --SEEEEEETTSEEEEEETTT
T ss_pred --CEEEEEECCCcEEEeecCC
Confidence 7889999999999997543
No 3
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=59.10 E-value=26 Score=32.11 Aligned_cols=73 Identities=22% Similarity=0.282 Sum_probs=47.8
Q ss_pred ccchhhhhccccceeccccccccCCCCCCCCCceeeEEEecCCCCcceeEEEeecCCCCCceEEEEecCCCCcceeEEEe
Q 001379 97 NFSAVAWCGKLNAIACASETCARIPSSNANTPFWIPIHIVIPERPTECAVFNVIADCPRDSVQFIEWSPTSCPRALLIAN 176 (1090)
Q Consensus 97 nFsavawc~klN~iaca~eTCarip~S~~np~fwiPihIviPerPtE~avfnv~adsp~d~vq~ieWSp~~cpRALLiAn 176 (1090)
...+++|....+.|+++.+... |+|...+......+.......-.+.|..|.|+|.. +-|+.+.
T Consensus 98 ~v~~~~~~~~~~~l~~~~~d~~--------------v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~ 161 (372)
T 1k8k_C 98 AARCVRWAPNEKKFAVGSGSRV--------------ISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNS--VLLAAGS 161 (372)
T ss_dssp CEEEEEECTTSSEEEEEETTSS--------------EEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTS--SEEEEEE
T ss_pred ceeEEEECCCCCEEEEEeCCCE--------------EEEEEecCCCcceeeeeeecccCCCeeEEEEcCCC--CEEEEEc
Confidence 3456677766777777754211 34444444333333334444446789999999964 6788889
Q ss_pred ccceEEEEe
Q 001379 177 FYGRVTIWT 185 (1090)
Q Consensus 177 f~GRvtIWt 185 (1090)
.+|.|.||.
T Consensus 162 ~dg~i~~~d 170 (372)
T 1k8k_C 162 CDFKCRIFS 170 (372)
T ss_dssp TTSCEEEEE
T ss_pred CCCCEEEEE
Confidence 999999998
No 4
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=58.98 E-value=36 Score=33.10 Aligned_cols=72 Identities=14% Similarity=0.070 Sum_probs=48.1
Q ss_pred chhhhhccccceeccccccccCCCCCCCCCceeeEEEecCCCCcceeEEEeecCCCCCceEEEEecCCCCcceeEEEecc
Q 001379 99 SAVAWCGKLNAIACASETCARIPSSNANTPFWIPIHIVIPERPTECAVFNVIADCPRDSVQFIEWSPTSCPRALLIANFY 178 (1090)
Q Consensus 99 savawc~klN~iaca~eTCarip~S~~np~fwiPihIviPerPtE~avfnv~adsp~d~vq~ieWSp~~cpRALLiAnf~ 178 (1090)
.+++|...-+.||++++.+. |.|..-+-...+. .+...-.+.|..+.|||.+ +-|+.+-.+
T Consensus 273 ~~~~~Spdg~~lasgs~D~~--------------V~iwd~~~~~~~~---~~~~gH~~~V~~v~fSpdg--~~laS~S~D 333 (365)
T 4h5i_A 273 TSMDVDMKGELAVLASNDNS--------------IALVKLKDLSMSK---IFKQAHSFAITEVTISPDS--TYVASVSAA 333 (365)
T ss_dssp EEEEECTTSCEEEEEETTSC--------------EEEEETTTTEEEE---EETTSSSSCEEEEEECTTS--CEEEEEETT
T ss_pred EeEEECCCCCceEEEcCCCE--------------EEEEECCCCcEEE---EecCcccCCEEEEEECCCC--CEEEEEeCC
Confidence 45666666677888766421 4444443322221 2233456789999999986 788999999
Q ss_pred ceEEEEecCCC
Q 001379 179 GRVTIWTQPSH 189 (1090)
Q Consensus 179 GRvtIWtQPsq 189 (1090)
|.|.||.=|..
T Consensus 334 ~tvrvw~ip~~ 344 (365)
T 4h5i_A 334 NTIHIIKLPLN 344 (365)
T ss_dssp SEEEEEECCTT
T ss_pred CeEEEEEcCCC
Confidence 99999987643
No 5
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=57.92 E-value=30 Score=31.44 Aligned_cols=71 Identities=7% Similarity=0.005 Sum_probs=43.7
Q ss_pred chhhhhcc--ccceeccccccccCCCCCCCCCceeeEEEecCCCCcce--eEEEeecCCCCCceEEEEecCCCCcceeEE
Q 001379 99 SAVAWCGK--LNAIACASETCARIPSSNANTPFWIPIHIVIPERPTEC--AVFNVIADCPRDSVQFIEWSPTSCPRALLI 174 (1090)
Q Consensus 99 savawc~k--lN~iaca~eTCarip~S~~np~fwiPihIviPerPtE~--avfnv~adsp~d~vq~ieWSp~~cpRALLi 174 (1090)
.+++|+.. .+.|+++++... |+|..-+..... ....+........|..+.|+|. .+-|+.
T Consensus 289 ~~~~~s~~~~~~~l~~~~~dg~--------------i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~s 352 (366)
T 3k26_A 289 WYMRFSMDFWQKMLALGNQVGK--------------LYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRD--SSILIA 352 (366)
T ss_dssp SCCCCEECTTSSEEEEECTTSC--------------EEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTT--SSEEEE
T ss_pred EEEEEcCCCCCcEEEEEecCCc--------------EEEEECCCCCCccccceEEcccccCCceEEEEeCCC--CCeEEE
Confidence 35666666 677777654321 344433322211 2222223223678999999994 478999
Q ss_pred EeccceEEEEe
Q 001379 175 ANFYGRVTIWT 185 (1090)
Q Consensus 175 Anf~GRvtIWt 185 (1090)
+..+|.|.||.
T Consensus 353 ~~~dg~i~iwd 363 (366)
T 3k26_A 353 VCDDASIWRWD 363 (366)
T ss_dssp EETTSEEEEEE
T ss_pred EeCCCEEEEEE
Confidence 99999999995
No 6
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=57.29 E-value=16 Score=34.24 Aligned_cols=72 Identities=14% Similarity=0.303 Sum_probs=48.4
Q ss_pred chhhhhc-cccceeccccccccCCCCCCCCCceeeEEEecCCCCcceeEEEeecCCCCCceEEEEecCCCCcceeEEEec
Q 001379 99 SAVAWCG-KLNAIACASETCARIPSSNANTPFWIPIHIVIPERPTECAVFNVIADCPRDSVQFIEWSPTSCPRALLIANF 177 (1090)
Q Consensus 99 savawc~-klN~iaca~eTCarip~S~~np~fwiPihIviPerPtE~avfnv~adsp~d~vq~ieWSp~~cpRALLiAnf 177 (1090)
.+++|+. .-+.|+++++.. =|+|...+..+.+..|. ...+.|..+.|+|.. ++-|+.+..
T Consensus 266 ~~~~~s~~~~~~l~s~~~dg--------------~v~~wd~~~~~~~~~~~----~~~~~v~~~~~s~~~-~~~l~s~~~ 326 (416)
T 2pm9_A 266 LSLDWCHQDEHLLLSSGRDN--------------TVLLWNPESAEQLSQFP----ARGNWCFKTKFAPEA-PDLFACASF 326 (416)
T ss_dssp EEEEECSSCSSCEEEEESSS--------------EEEEECSSSCCEEEEEE----CSSSCCCCEEECTTC-TTEEEECCS
T ss_pred eEEEeCCCCCCeEEEEeCCC--------------CEEEeeCCCCccceeec----CCCCceEEEEECCCC-CCEEEEEec
Confidence 4566665 556666665421 15555555555555554 345679999999964 578889999
Q ss_pred cceEEEEecCCC
Q 001379 178 YGRVTIWTQPSH 189 (1090)
Q Consensus 178 ~GRvtIWtQPsq 189 (1090)
+|+|.||.=.+.
T Consensus 327 d~~i~iw~~~~~ 338 (416)
T 2pm9_A 327 DNKIEVQTLQNL 338 (416)
T ss_dssp SSEEEEEESCCC
T ss_pred CCcEEEEEccCC
Confidence 999999985544
No 7
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=55.55 E-value=21 Score=32.52 Aligned_cols=34 Identities=21% Similarity=0.474 Sum_probs=29.9
Q ss_pred CCCCceEEEEecCCCCcceeEEEeccceEEEEec
Q 001379 153 CPRDSVQFIEWSPTSCPRALLIANFYGRVTIWTQ 186 (1090)
Q Consensus 153 sp~d~vq~ieWSp~~cpRALLiAnf~GRvtIWtQ 186 (1090)
...+.|..+.|+|....+-|+.+..+|.|.||.-
T Consensus 53 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~ 86 (379)
T 3jrp_A 53 GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKE 86 (379)
T ss_dssp CCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEE
T ss_pred CCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEc
Confidence 3567899999999877889999999999999964
No 8
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=55.33 E-value=22 Score=33.19 Aligned_cols=74 Identities=15% Similarity=0.215 Sum_probs=45.6
Q ss_pred ccchhhhhccccceeccccccccCCCCCCCCCceeeEEEecCCCCcceeEEEeecCCCCCceEEEEecCCCCcceeEEEe
Q 001379 97 NFSAVAWCGKLNAIACASETCARIPSSNANTPFWIPIHIVIPERPTECAVFNVIADCPRDSVQFIEWSPTSCPRALLIAN 176 (1090)
Q Consensus 97 nFsavawc~klN~iaca~eTCarip~S~~np~fwiPihIviPerPtE~avfnv~adsp~d~vq~ieWSp~~cpRALLiAn 176 (1090)
...+++|....+.|+++++... |.|...+..++..........-.+.|..|.|+|.. +-|+.+.
T Consensus 102 ~v~~~~~~~~~~~l~~~~~d~~--------------i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~~~~ 165 (377)
T 3dwl_C 102 AATFVRWSPNEDKFAVGSGARV--------------ISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNN--VLLAAGC 165 (377)
T ss_dssp CEEEEECCTTSSCCEEEESSSC--------------EEECCC-----CCCCEEECSSCCSCEEEEEECTTS--SEEEEEE
T ss_pred ceEEEEECCCCCEEEEEecCCe--------------EEEEEECCcccceeeeEeecccCCCeEEEEEcCCC--CEEEEEe
Confidence 3456777777777777655321 34444433332222233333356789999999964 6788899
Q ss_pred ccceEEEEec
Q 001379 177 FYGRVTIWTQ 186 (1090)
Q Consensus 177 f~GRvtIWtQ 186 (1090)
.+|.|.||.-
T Consensus 166 ~d~~i~iwd~ 175 (377)
T 3dwl_C 166 ADRKAYVLSA 175 (377)
T ss_dssp SSSCEEEEEE
T ss_pred CCCEEEEEEE
Confidence 9999999974
No 9
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=55.30 E-value=12 Score=33.50 Aligned_cols=68 Identities=22% Similarity=0.266 Sum_probs=42.7
Q ss_pred heeeeccCCceEEeee--eeCceeeeeCCCCCcccceeeecccccccCccCccccccceeeecCCCCceEEEEEee
Q 001379 561 ARIVYSAHGGEIAIAL--LRGGVHIFSGPNFAPVDNYQISVGSAIAAPAFSSTSCCSASVWHDTNKDRTILKIIRV 634 (1090)
Q Consensus 561 ARiVySAhgGEiavAf--l~GgVhiFSG~nftpVdnyqInVgsaIa~PaFSsTSCCsASVWHDt~kd~~iLkIirV 634 (1090)
..+.|+..+.+++++- -.|.|+||.-.+..++..++-- ...|-.-+||+..-..||.= .| -.+||-++
T Consensus 244 ~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH-~~~V~~l~~spdg~~l~S~s----~D-~~v~iWd~ 313 (318)
T 4ggc_A 244 CSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGH-TSRVLSLTMSPDGATVASAA----AD-ETLRLWRC 313 (318)
T ss_dssp EEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCC-SSCEEEEEECTTSSCEEEEE----TT-TEEEEECC
T ss_pred eeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCC-CCCEEEEEEcCCCCEEEEEe----cC-CeEEEEEC
Confidence 3456777888887764 5678999998888887665422 23455556776655555432 22 34666665
No 10
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=52.52 E-value=40 Score=30.48 Aligned_cols=72 Identities=10% Similarity=0.094 Sum_probs=45.5
Q ss_pred cchhhhhccc---cceeccccccccCCCCCCCCCceeeEEEecCCCCcceeEEEeecCCCCCceEEEEecCCCCcceeEE
Q 001379 98 FSAVAWCGKL---NAIACASETCARIPSSNANTPFWIPIHIVIPERPTECAVFNVIADCPRDSVQFIEWSPTSCPRALLI 174 (1090)
Q Consensus 98 Fsavawc~kl---N~iaca~eTCarip~S~~np~fwiPihIviPerPtE~avfnv~adsp~d~vq~ieWSp~~cpRALLi 174 (1090)
..+++|+... +.|+++++... |.|..-+...+.....+ ....+.|..+.|+| ..+-|+.
T Consensus 42 v~~~~~~~~~~~g~~l~~~~~dg~--------------i~iw~~~~~~~~~~~~~--~~h~~~v~~~~~~~--~~~~l~s 103 (368)
T 3mmy_A 42 IGCLSFSPPTLPGNFLIAGSWAND--------------VRCWEVQDSGQTIPKAQ--QMHTGPVLDVCWSD--DGSKVFT 103 (368)
T ss_dssp EEEEEECCTTSSSEEEEEEETTSE--------------EEEEEECTTSCEEEEEE--EECSSCEEEEEECT--TSSEEEE
T ss_pred eEEEEEcCCCCCceEEEEECCCCc--------------EEEEEcCCCCceeEEEe--ccccCCEEEEEECc--CCCEEEE
Confidence 3556666663 67777654311 44444443223221222 22457899999999 5678999
Q ss_pred EeccceEEEEecC
Q 001379 175 ANFYGRVTIWTQP 187 (1090)
Q Consensus 175 Anf~GRvtIWtQP 187 (1090)
+..+|.|.||.-.
T Consensus 104 ~~~dg~v~iwd~~ 116 (368)
T 3mmy_A 104 ASCDKTAKMWDLS 116 (368)
T ss_dssp EETTSEEEEEETT
T ss_pred EcCCCcEEEEEcC
Confidence 9999999999754
No 11
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=51.58 E-value=44 Score=31.82 Aligned_cols=36 Identities=22% Similarity=0.497 Sum_probs=28.4
Q ss_pred CCCCceEEEEecCCCCcceeEEEeccceEEEEecCCC
Q 001379 153 CPRDSVQFIEWSPTSCPRALLIANFYGRVTIWTQPSH 189 (1090)
Q Consensus 153 sp~d~vq~ieWSp~~cpRALLiAnf~GRvtIWtQPsq 189 (1090)
.-.+.|..+.|+|.. ++-|..+-.+|+|.||.-.+.
T Consensus 301 ~h~~~V~~v~~~p~~-~~~laS~s~Dg~v~~W~~~~~ 336 (345)
T 3fm0_A 301 AHSQDVNCVAWNPKE-PGLLASCSDDGEVAFWKYQRP 336 (345)
T ss_dssp SSSSCEEEEEECSSS-TTEEEEEETTSCEEEEEECC-
T ss_pred cccCcEeEeEEeCCC-ceEEEEcCCCCcEEEEEecCC
Confidence 346789999999964 456778899999999986554
No 12
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=51.49 E-value=37 Score=29.97 Aligned_cols=37 Identities=19% Similarity=0.469 Sum_probs=30.8
Q ss_pred CCCCceEEEEecCCCCcceeEEEeccceEEEEecCCC
Q 001379 153 CPRDSVQFIEWSPTSCPRALLIANFYGRVTIWTQPSH 189 (1090)
Q Consensus 153 sp~d~vq~ieWSp~~cpRALLiAnf~GRvtIWtQPsq 189 (1090)
...+.|..|.|+|....+-|+.+..+|.|.||.-.+.
T Consensus 55 ~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~ 91 (351)
T 3f3f_A 55 AHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPD 91 (351)
T ss_dssp CCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTT
T ss_pred cCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCC
Confidence 4567899999999766788999999999999975443
No 13
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=51.05 E-value=39 Score=33.36 Aligned_cols=71 Identities=18% Similarity=0.247 Sum_probs=50.2
Q ss_pred cchhhhhccccceeccccccccCCCCCCCCCceeeEEEecCCCC----cceeEEEeecCCCCCc-eEEEEecCCCCccee
Q 001379 98 FSAVAWCGKLNAIACASETCARIPSSNANTPFWIPIHIVIPERP----TECAVFNVIADCPRDS-VQFIEWSPTSCPRAL 172 (1090)
Q Consensus 98 Fsavawc~klN~iaca~eTCarip~S~~np~fwiPihIviPerP----tE~avfnv~adsp~d~-vq~ieWSp~~cpRAL 172 (1090)
-.+++|....+.|+++.+.. |.|...+.+ .....| ....+. |..+.|||....+-|
T Consensus 21 v~~~~~spdg~~l~~~~~~~---------------v~v~~~~~~~~~~~~~~~~----~~h~~~~v~~~~~sp~~~~~~l 81 (615)
T 1pgu_A 21 TTHLSYDPTTNAIAYPCGKS---------------AFVRCLDDGDSKVPPVVQF----TGHGSSVVTTVKFSPIKGSQYL 81 (615)
T ss_dssp CCCCEEETTTTEEEEEETTE---------------EEEEECCSSCCSSCSEEEE----CTTTTSCEEEEEECSSTTCCEE
T ss_pred eeEEEECCCCCEEEEecCCe---------------EEEEECCCCCCccccceEE----ecCCCceEEEEEECcCCCCCEE
Confidence 45778888888888875321 455555544 444444 344677 999999994345788
Q ss_pred EEEeccceEEEEecC
Q 001379 173 LIANFYGRVTIWTQP 187 (1090)
Q Consensus 173 LiAnf~GRvtIWtQP 187 (1090)
+.+..+|.|.||.-.
T Consensus 82 ~s~~~dg~v~vw~~~ 96 (615)
T 1pgu_A 82 CSGDESGKVIVWGWT 96 (615)
T ss_dssp EEEETTSEEEEEEEE
T ss_pred EEecCCCEEEEEeCC
Confidence 999999999999764
No 14
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=50.36 E-value=45 Score=29.65 Aligned_cols=47 Identities=17% Similarity=0.228 Sum_probs=34.7
Q ss_pred EEEecCCCCcceeEEEeecCCCCCceEEEEecCCCCcceeEEEeccceEEEEec
Q 001379 133 IHIVIPERPTECAVFNVIADCPRDSVQFIEWSPTSCPRALLIANFYGRVTIWTQ 186 (1090)
Q Consensus 133 ihIviPerPtE~avfnv~adsp~d~vq~ieWSp~~cpRALLiAnf~GRvtIWtQ 186 (1090)
|+|...+..+....|. ...+.|..+.|+|.. + |+.+..+|+|.||.-
T Consensus 207 i~i~d~~~~~~~~~~~----~~~~~i~~~~~~~~~--~-l~~~~~dg~v~iwd~ 253 (313)
T 3odt_A 207 IKLVDMHTGDVLRTYE----GHESFVYCIKLLPNG--D-IVSCGEDRTVRIWSK 253 (313)
T ss_dssp EEEEETTTCCEEEEEE----CCSSCEEEEEECTTS--C-EEEEETTSEEEEECT
T ss_pred EEEEECCchhhhhhhh----cCCceEEEEEEecCC--C-EEEEecCCEEEEEEC
Confidence 5555555555554443 345679999999988 3 899999999999963
No 15
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=49.24 E-value=50 Score=31.84 Aligned_cols=70 Identities=21% Similarity=0.276 Sum_probs=46.3
Q ss_pred cchhhhhccccceeccccccccCCCCCCCCCceeeEEEecCCCCcceeEEEeecCCCCCceEEEEecCCCCcceeEEEec
Q 001379 98 FSAVAWCGKLNAIACASETCARIPSSNANTPFWIPIHIVIPERPTECAVFNVIADCPRDSVQFIEWSPTSCPRALLIANF 177 (1090)
Q Consensus 98 Fsavawc~klN~iaca~eTCarip~S~~np~fwiPihIviPerPtE~avfnv~adsp~d~vq~ieWSp~~cpRALLiAnf 177 (1090)
..+++|.+ .+.++++.+.+ |+|...+.......+.. ...+.|..+.|+|. .+-|+++..
T Consensus 96 ~~~~~~s~-~~l~~~~~d~~---------------v~lw~~~~~~~~~~~~~---~~~~~v~~v~~s~~--~~~l~~~~~ 154 (401)
T 4aez_A 96 LNLLDWSN-LNVVAVALERN---------------VYVWNADSGSVSALAET---DESTYVASVKWSHD--GSFLSVGLG 154 (401)
T ss_dssp CBCEEECT-TSEEEEEETTE---------------EEEEETTTCCEEEEEEC---CTTCCEEEEEECTT--SSEEEEEET
T ss_pred EEEEeecC-CCEEEEECCCe---------------EEEeeCCCCcEeEeeec---CCCCCEEEEEECCC--CCEEEEECC
Confidence 34577776 46777665433 45555544433333333 25677999999994 467889999
Q ss_pred cceEEEEecCC
Q 001379 178 YGRVTIWTQPS 188 (1090)
Q Consensus 178 ~GRvtIWtQPs 188 (1090)
+|.|.||.-.+
T Consensus 155 dg~i~iwd~~~ 165 (401)
T 4aez_A 155 NGLVDIYDVES 165 (401)
T ss_dssp TSCEEEEETTT
T ss_pred CCeEEEEECcC
Confidence 99999997544
No 16
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=48.36 E-value=34 Score=31.33 Aligned_cols=68 Identities=18% Similarity=0.329 Sum_probs=45.8
Q ss_pred chhhhhccccceeccccccccCCCCCCCCCceeeEEEecCCCCc--ceeEEEeecCCCCCceEEEEecCCCCcceeEEEe
Q 001379 99 SAVAWCGKLNAIACASETCARIPSSNANTPFWIPIHIVIPERPT--ECAVFNVIADCPRDSVQFIEWSPTSCPRALLIAN 176 (1090)
Q Consensus 99 savawc~klN~iaca~eTCarip~S~~np~fwiPihIviPerPt--E~avfnv~adsp~d~vq~ieWSp~~cpRALLiAn 176 (1090)
.+++|....+.|+++.+.. =|.|...+..+ ....|. ...+.|..|.|+|. .+-|+.+.
T Consensus 12 ~~~~~s~~~~~l~~~~~d~--------------~v~i~~~~~~~~~~~~~~~----~h~~~v~~~~~~~~--~~~l~~~~ 71 (372)
T 1k8k_C 12 SCHAWNKDRTQIAICPNNH--------------EVHIYEKSGNKWVQVHELK----EHNGQVTGVDWAPD--SNRIVTCG 71 (372)
T ss_dssp CEEEECTTSSEEEEECSSS--------------EEEEEEEETTEEEEEEEEE----CCSSCEEEEEEETT--TTEEEEEE
T ss_pred EEEEECCCCCEEEEEeCCC--------------EEEEEeCCCCcEEeeeeec----CCCCcccEEEEeCC--CCEEEEEc
Confidence 4566766677777664321 14555544433 344443 35678999999994 57889999
Q ss_pred ccceEEEEec
Q 001379 177 FYGRVTIWTQ 186 (1090)
Q Consensus 177 f~GRvtIWtQ 186 (1090)
.+|.|.||.-
T Consensus 72 ~dg~i~vwd~ 81 (372)
T 1k8k_C 72 TDRNAYVWTL 81 (372)
T ss_dssp TTSCEEEEEE
T ss_pred CCCeEEEEEC
Confidence 9999999975
No 17
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=48.29 E-value=40 Score=31.43 Aligned_cols=32 Identities=6% Similarity=0.055 Sum_probs=27.9
Q ss_pred CCceEEEEecCCC--------CcceeEEEeccceEEEEec
Q 001379 155 RDSVQFIEWSPTS--------CPRALLIANFYGRVTIWTQ 186 (1090)
Q Consensus 155 ~d~vq~ieWSp~~--------cpRALLiAnf~GRvtIWtQ 186 (1090)
.+.|..+.|+|.. -++.|+.+..+|+|.||.-
T Consensus 354 ~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~ 393 (397)
T 1sq9_A 354 EPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFRE 393 (397)
T ss_dssp SCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEE
T ss_pred CCceeEEEeccccccccccccccceEEEecCCCcEEEEEc
Confidence 6789999999986 4578999999999999964
No 18
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=48.02 E-value=10 Score=35.40 Aligned_cols=71 Identities=10% Similarity=0.213 Sum_probs=42.7
Q ss_pred cchhhhhccccceeccccccccCCCCCCCCCceeeEEEecCCCC--cceeEEEeecCCCCCceEEEEecCCCCcceeEEE
Q 001379 98 FSAVAWCGKLNAIACASETCARIPSSNANTPFWIPIHIVIPERP--TECAVFNVIADCPRDSVQFIEWSPTSCPRALLIA 175 (1090)
Q Consensus 98 Fsavawc~klN~iaca~eTCarip~S~~np~fwiPihIviPerP--tE~avfnv~adsp~d~vq~ieWSp~~cpRALLiA 175 (1090)
-.+++|....+.|+++++... |+|...+-. .....| ....+.|..+.|+|.. +-|+.+
T Consensus 14 v~~~~~s~~g~~l~~~~~d~~--------------i~iw~~~~~~~~~~~~~----~~h~~~v~~~~~s~~~--~~l~s~ 73 (377)
T 3dwl_C 14 SYEHAFNSQRTEFVTTTATNQ--------------VELYEQDGNGWKHARTF----SDHDKIVTCVDWAPKS--NRIVTC 73 (377)
T ss_dssp CSCCEECSSSSEEECCCSSSC--------------BCEEEEETTEEEECCCB----CCCSSCEEEEEECTTT--CCEEEE
T ss_pred EEEEEECCCCCEEEEecCCCE--------------EEEEEccCCceEEEEEE----ecCCceEEEEEEeCCC--CEEEEE
Confidence 456777777778887744211 222222211 222222 2356789999999985 678889
Q ss_pred eccceEEEEecCC
Q 001379 176 NFYGRVTIWTQPS 188 (1090)
Q Consensus 176 nf~GRvtIWtQPs 188 (1090)
..+|.|.||.=.+
T Consensus 74 s~d~~v~vwd~~~ 86 (377)
T 3dwl_C 74 SQDRNAYVYEKRP 86 (377)
T ss_dssp ETTSSEEEC----
T ss_pred eCCCeEEEEEcCC
Confidence 9999999997543
No 19
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=47.75 E-value=35 Score=30.88 Aligned_cols=69 Identities=7% Similarity=0.080 Sum_probs=44.3
Q ss_pred chhhhhccccceeccccccccCCCCCCCCCceeeEEEecCCCCcceeEEEeecCCCCCceEEEEecCCCCcceeEEEecc
Q 001379 99 SAVAWCGKLNAIACASETCARIPSSNANTPFWIPIHIVIPERPTECAVFNVIADCPRDSVQFIEWSPTSCPRALLIANFY 178 (1090)
Q Consensus 99 savawc~klN~iaca~eTCarip~S~~np~fwiPihIviPerPtE~avfnv~adsp~d~vq~ieWSp~~cpRALLiAnf~ 178 (1090)
.+++|...-+.|+++++.. =|.|...+.......| ....+.|..+.|+|. .+-|+.+..+
T Consensus 36 ~~~~~s~~~~~l~~~~~dg--------------~i~vwd~~~~~~~~~~----~~h~~~v~~~~~~~~--~~~l~s~~~d 95 (369)
T 3zwl_B 36 TQVKYNKEGDLLFSCSKDS--------------SASVWYSLNGERLGTL----DGHTGTIWSIDVDCF--TKYCVTGSAD 95 (369)
T ss_dssp EEEEECTTSCEEEEEESSS--------------CEEEEETTTCCEEEEE----CCCSSCEEEEEECTT--SSEEEEEETT
T ss_pred EEEEEcCCCCEEEEEeCCC--------------EEEEEeCCCchhhhhh----hhcCCcEEEEEEcCC--CCEEEEEeCC
Confidence 3556666666777665421 1344444333333333 245678999999995 4788899999
Q ss_pred ceEEEEecC
Q 001379 179 GRVTIWTQP 187 (1090)
Q Consensus 179 GRvtIWtQP 187 (1090)
|.|.||.=.
T Consensus 96 g~i~iwd~~ 104 (369)
T 3zwl_B 96 YSIKLWDVS 104 (369)
T ss_dssp TEEEEEETT
T ss_pred CeEEEEECC
Confidence 999999643
No 20
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=47.75 E-value=61 Score=28.98 Aligned_cols=70 Identities=16% Similarity=0.104 Sum_probs=46.8
Q ss_pred cchhhhhccccceeccccccccCCCCCCCCCceeeEEEecCCCCcceeEEEeecCCCCCceEEEEecCCCCcceeEEEec
Q 001379 98 FSAVAWCGKLNAIACASETCARIPSSNANTPFWIPIHIVIPERPTECAVFNVIADCPRDSVQFIEWSPTSCPRALLIANF 177 (1090)
Q Consensus 98 Fsavawc~klN~iaca~eTCarip~S~~np~fwiPihIviPerPtE~avfnv~adsp~d~vq~ieWSp~~cpRALLiAnf 177 (1090)
..+++|....+.++++++.. =|++...+..+....|. ...+.|..+.|+|.. +-|+.+..
T Consensus 144 i~~~~~~~~~~~l~~~~~dg--------------~v~~~d~~~~~~~~~~~----~~~~~i~~~~~~~~~--~~l~~~~~ 203 (337)
T 1gxr_A 144 CYALAISPDSKVCFSCCSDG--------------NIAVWDLHNQTLVRQFQ----GHTDGASCIDISNDG--TKLWTGGL 203 (337)
T ss_dssp EEEEEECTTSSEEEEEETTS--------------CEEEEETTTTEEEEEEC----CCSSCEEEEEECTTS--SEEEEEET
T ss_pred eEEEEECCCCCEEEEEeCCC--------------cEEEEeCCCCceeeeee----cccCceEEEEECCCC--CEEEEEec
Confidence 34566666666666665421 15556555544444432 356789999999964 78889999
Q ss_pred cceEEEEecC
Q 001379 178 YGRVTIWTQP 187 (1090)
Q Consensus 178 ~GRvtIWtQP 187 (1090)
+|.|.||.-.
T Consensus 204 dg~i~~~d~~ 213 (337)
T 1gxr_A 204 DNTVRSWDLR 213 (337)
T ss_dssp TSEEEEEETT
T ss_pred CCcEEEEECC
Confidence 9999999754
No 21
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=45.94 E-value=51 Score=29.26 Aligned_cols=49 Identities=16% Similarity=0.178 Sum_probs=35.2
Q ss_pred EEEecCCCCcceeEEEeecCCCCCceEEEEecCCCCcceeEEEeccceEEEEecCC
Q 001379 133 IHIVIPERPTECAVFNVIADCPRDSVQFIEWSPTSCPRALLIANFYGRVTIWTQPS 188 (1090)
Q Consensus 133 ihIviPerPtE~avfnv~adsp~d~vq~ieWSp~~cpRALLiAnf~GRvtIWtQPs 188 (1090)
|+|...+..+....|. .+.+.|..+.|+|..- |+.+..+|.|.||.-.+
T Consensus 248 v~iwd~~~~~~~~~~~----~~~~~i~~~~~~~~~~---~~~~~~dg~i~iw~~~~ 296 (313)
T 3odt_A 248 VRIWSKENGSLKQVIT----LPAISIWSVDCMSNGD---IIVGSSDNLVRIFSQEK 296 (313)
T ss_dssp EEEECTTTCCEEEEEE----CSSSCEEEEEECTTSC---EEEEETTSCEEEEESCG
T ss_pred EEEEECCCCceeEEEe----ccCceEEEEEEccCCC---EEEEeCCCcEEEEeCCC
Confidence 4455555555455543 3456799999999873 88999999999998543
No 22
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=44.66 E-value=65 Score=30.84 Aligned_cols=71 Identities=24% Similarity=0.460 Sum_probs=45.3
Q ss_pred cchhhhhc-cccceeccccccccCCCCCCCCCceeeEEEecCCCC-------cceeEEEeecCCCCCceEEEEecCCCCc
Q 001379 98 FSAVAWCG-KLNAIACASETCARIPSSNANTPFWIPIHIVIPERP-------TECAVFNVIADCPRDSVQFIEWSPTSCP 169 (1090)
Q Consensus 98 Fsavawc~-klN~iaca~eTCarip~S~~np~fwiPihIviPerP-------tE~avfnv~adsp~d~vq~ieWSp~~cp 169 (1090)
-.+++|+. ..+.|+.+++.+. |.|..-+.. +....+. ...+.|..|.|+|.. +
T Consensus 84 V~~~~~~p~~~~~l~s~s~dg~--------------v~vw~~~~~~~~~~~~~~~~~~~----~h~~~v~~~~~~p~~-~ 144 (402)
T 2aq5_A 84 VLDIAWCPHNDNVIASGSEDCT--------------VMVWEIPDGGLVLPLREPVITLE----GHTKRVGIVAWHPTA-Q 144 (402)
T ss_dssp EEEEEECTTCTTEEEEEETTSE--------------EEEEECCTTCCSSCBCSCSEEEE----CCSSCEEEEEECSSB-T
T ss_pred EEEEEeCCCCCCEEEEEeCCCe--------------EEEEEccCCCCccccCCceEEec----CCCCeEEEEEECcCC-C
Confidence 35677777 6778888766532 222222211 1122222 345789999999976 5
Q ss_pred ceeEEEeccceEEEEecC
Q 001379 170 RALLIANFYGRVTIWTQP 187 (1090)
Q Consensus 170 RALLiAnf~GRvtIWtQP 187 (1090)
+-|+.+..+|.|.||.=.
T Consensus 145 ~~l~s~~~dg~i~iwd~~ 162 (402)
T 2aq5_A 145 NVLLSAGCDNVILVWDVG 162 (402)
T ss_dssp TEEEEEETTSCEEEEETT
T ss_pred CEEEEEcCCCEEEEEECC
Confidence 678889999999999743
No 23
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=44.47 E-value=74 Score=28.06 Aligned_cols=35 Identities=11% Similarity=0.154 Sum_probs=29.0
Q ss_pred CCCCceEEEEecCCCCcceeEEEeccceEEEEecC
Q 001379 153 CPRDSVQFIEWSPTSCPRALLIANFYGRVTIWTQP 187 (1090)
Q Consensus 153 sp~d~vq~ieWSp~~cpRALLiAnf~GRvtIWtQP 187 (1090)
...+.|..+.|+|..-.+-|+.+..+|.|.||.=.
T Consensus 108 ~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~ 142 (351)
T 3f3f_A 108 DSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDAL 142 (351)
T ss_dssp CCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECS
T ss_pred ccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCC
Confidence 34678999999998656789999999999999743
No 24
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=42.28 E-value=59 Score=30.06 Aligned_cols=68 Identities=15% Similarity=0.255 Sum_probs=45.0
Q ss_pred cchhhhhccccceeccccccccCCCCCCCCCceeeEEEecCCCCcceeEEEeecCCCCCceEEEEecCCCCcceeEEEec
Q 001379 98 FSAVAWCGKLNAIACASETCARIPSSNANTPFWIPIHIVIPERPTECAVFNVIADCPRDSVQFIEWSPTSCPRALLIANF 177 (1090)
Q Consensus 98 Fsavawc~klN~iaca~eTCarip~S~~np~fwiPihIviPerPtE~avfnv~adsp~d~vq~ieWSp~~cpRALLiAnf 177 (1090)
..+++|+...+.|+++++... |.|...+..+....| ....+.|..+.|+|.. -|+.+..
T Consensus 250 i~~~~~~~~~~~l~~~~~d~~--------------i~i~d~~~~~~~~~~----~~~~~~i~~~~~~~~~---~l~~~~~ 308 (425)
T 1r5m_A 250 ISVLEFNDTNKLLLSASDDGT--------------LRIWHGGNGNSQNCF----YGHSQSIVSASWVGDD---KVISCSM 308 (425)
T ss_dssp EEEEEEETTTTEEEEEETTSC--------------EEEECSSSBSCSEEE----CCCSSCEEEEEEETTT---EEEEEET
T ss_pred eEEEEECCCCCEEEEEcCCCE--------------EEEEECCCCccceEe----cCCCccEEEEEECCCC---EEEEEeC
Confidence 345667666666776654211 445544444444433 2346689999999987 7888899
Q ss_pred cceEEEEec
Q 001379 178 YGRVTIWTQ 186 (1090)
Q Consensus 178 ~GRvtIWtQ 186 (1090)
+|+|.||.-
T Consensus 309 d~~i~i~d~ 317 (425)
T 1r5m_A 309 DGSVRLWSL 317 (425)
T ss_dssp TSEEEEEET
T ss_pred CCcEEEEEC
Confidence 999999974
No 25
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=42.13 E-value=60 Score=29.96 Aligned_cols=35 Identities=9% Similarity=0.079 Sum_probs=28.6
Q ss_pred CCCCceEEEEecCCCCcceeEEEeccceEEEEecCCC
Q 001379 153 CPRDSVQFIEWSPTSCPRALLIANFYGRVTIWTQPSH 189 (1090)
Q Consensus 153 sp~d~vq~ieWSp~~cpRALLiAnf~GRvtIWtQPsq 189 (1090)
...+.|..+.|+|.. +.|+.+..+|.|.||.=.+.
T Consensus 332 ~~~~~v~~~~~s~~~--~~l~s~~~dg~i~iw~~~~~ 366 (408)
T 4a11_B 332 GHYKTVDCCVFQSNF--QELYSGSRDCNILAWVPSLY 366 (408)
T ss_dssp CCSSCEEEEEEETTT--TEEEEEETTSCEEEEEECC-
T ss_pred cCCCeEEEEEEcCCC--CEEEEECCCCeEEEEeCCCC
Confidence 456789999999975 77999999999999975544
No 26
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=41.74 E-value=59 Score=29.08 Aligned_cols=72 Identities=11% Similarity=0.195 Sum_probs=46.5
Q ss_pred chhhhhccccceeccccccccCCCCCCCCCceeeEEEecCCCCcceeEEE-eecCCCCCceEEEEecCCCCcceeEEEec
Q 001379 99 SAVAWCGKLNAIACASETCARIPSSNANTPFWIPIHIVIPERPTECAVFN-VIADCPRDSVQFIEWSPTSCPRALLIANF 177 (1090)
Q Consensus 99 savawc~klN~iaca~eTCarip~S~~np~fwiPihIviPerPtE~avfn-v~adsp~d~vq~ieWSp~~cpRALLiAnf 177 (1090)
.+++|....+.|+++.+.+ |.|...+...+...+. +......+.|..+.|+|.. +-|+++..
T Consensus 55 ~~~~~~~~~~~l~~~~dg~---------------i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~ 117 (337)
T 1gxr_A 55 CAVTISNPTRHVYTGGKGC---------------VKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG--CTLIVGGE 117 (337)
T ss_dssp CEEEECSSSSEEEEECBSE---------------EEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTS--SEEEEEES
T ss_pred EEEEEecCCcEEEEcCCCe---------------EEEEECCCCCceeeeecccccCCCCcEEEEEEcCCC--CEEEEEcC
Confidence 4566777777787775322 3444444333322222 2223456789999999964 67888999
Q ss_pred cceEEEEecC
Q 001379 178 YGRVTIWTQP 187 (1090)
Q Consensus 178 ~GRvtIWtQP 187 (1090)
+|.|.||.-.
T Consensus 118 d~~i~~~d~~ 127 (337)
T 1gxr_A 118 ASTLSIWDLA 127 (337)
T ss_dssp SSEEEEEECC
T ss_pred CCcEEEEECC
Confidence 9999999743
No 27
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=41.30 E-value=68 Score=29.59 Aligned_cols=75 Identities=15% Similarity=0.236 Sum_probs=46.1
Q ss_pred cchhhhhc-cccceeccccccccCCCCCCCCCceeeEEEecCCCCcceeEEEeec---------CCCCCceEEEEecCCC
Q 001379 98 FSAVAWCG-KLNAIACASETCARIPSSNANTPFWIPIHIVIPERPTECAVFNVIA---------DCPRDSVQFIEWSPTS 167 (1090)
Q Consensus 98 Fsavawc~-klN~iaca~eTCarip~S~~np~fwiPihIviPerPtE~avfnv~a---------dsp~d~vq~ieWSp~~ 167 (1090)
-.+++|+. .-+.|+++++... |.|...+.......+.... +...+.|..+.|+|.
T Consensus 46 v~~~~~s~~~~~~l~~~~~dg~--------------i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~- 110 (408)
T 4a11_B 46 INTLDIEPVEGRYMLSGGSDGV--------------IVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPH- 110 (408)
T ss_dssp EEEEEECTTTCCEEEEEETTSC--------------EEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTT-
T ss_pred EEEEEEecCCCCEEEEEcCCCe--------------EEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccC-
Confidence 34566666 5666766654311 3444444433333333211 345678999999985
Q ss_pred CcceeEEEeccceEEEEecC
Q 001379 168 CPRALLIANFYGRVTIWTQP 187 (1090)
Q Consensus 168 cpRALLiAnf~GRvtIWtQP 187 (1090)
..+-|+.+..+|.|.||.-.
T Consensus 111 ~~~~l~s~~~d~~i~iwd~~ 130 (408)
T 4a11_B 111 DTGMFTSSSFDKTLKVWDTN 130 (408)
T ss_dssp CTTCEEEEETTSEEEEEETT
T ss_pred CCcEEEEEeCCCeEEEeeCC
Confidence 34678888999999999643
No 28
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=41.17 E-value=62 Score=30.54 Aligned_cols=70 Identities=16% Similarity=0.196 Sum_probs=47.5
Q ss_pred cchhhhhccccceeccccccccCCCCCCCCCceeeEEEecCCCCcceeEEEeecCCCCCceEEEEecCCCCcceeEEEec
Q 001379 98 FSAVAWCGKLNAIACASETCARIPSSNANTPFWIPIHIVIPERPTECAVFNVIADCPRDSVQFIEWSPTSCPRALLIANF 177 (1090)
Q Consensus 98 Fsavawc~klN~iaca~eTCarip~S~~np~fwiPihIviPerPtE~avfnv~adsp~d~vq~ieWSp~~cpRALLiAnf 177 (1090)
-.+++|....+.|+.+++.. =|.|...+..+....|. ...+.|..+.|+|. .+-|+.+..
T Consensus 142 v~~~~~~~~~~~l~s~s~d~--------------~i~iwd~~~~~~~~~~~----~h~~~v~~~~~~~~--~~~l~s~~~ 201 (420)
T 3vl1_A 142 ITKLKFFPSGEALISSSQDM--------------QLKIWSVKDGSNPRTLI----GHRATVTDIAIIDR--GRNVLSASL 201 (420)
T ss_dssp EEEEEECTTSSEEEEEETTS--------------EEEEEETTTCCCCEEEE----CCSSCEEEEEEETT--TTEEEEEET
T ss_pred cEEEEECCCCCEEEEEeCCC--------------eEEEEeCCCCcCceEEc----CCCCcEEEEEEcCC--CCEEEEEcC
Confidence 34566666666666655421 15566666555555553 45678999999996 467889999
Q ss_pred cceEEEEecC
Q 001379 178 YGRVTIWTQP 187 (1090)
Q Consensus 178 ~GRvtIWtQP 187 (1090)
+|.|.||.-.
T Consensus 202 d~~v~iwd~~ 211 (420)
T 3vl1_A 202 DGTIRLWECG 211 (420)
T ss_dssp TSCEEEEETT
T ss_pred CCcEEEeECC
Confidence 9999999643
No 29
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=38.64 E-value=82 Score=28.45 Aligned_cols=31 Identities=10% Similarity=0.062 Sum_probs=26.4
Q ss_pred CCCceEEEEecCCCCcceeEEEeccceEEEEec
Q 001379 154 PRDSVQFIEWSPTSCPRALLIANFYGRVTIWTQ 186 (1090)
Q Consensus 154 p~d~vq~ieWSp~~cpRALLiAnf~GRvtIWtQ 186 (1090)
..+.|..+.|+|.. +-|+.+..+|+|.||.=
T Consensus 314 ~~~~v~~~~~s~~~--~~l~s~~~dg~v~iw~~ 344 (369)
T 3zwl_B 314 HFGPLNTVAISPQG--TSYASGGEDGFIRLHHF 344 (369)
T ss_dssp CSSCEEEEEECTTS--SEEEEEETTSEEEEEEE
T ss_pred ccCcEEEEEECCCC--CEEEEEcCCCeEEEEEC
Confidence 46789999999965 67888999999999963
No 30
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=38.12 E-value=70 Score=29.01 Aligned_cols=54 Identities=15% Similarity=0.186 Sum_probs=38.8
Q ss_pred EEEecCCCCcceeEEEeecCC-CCCceEEEEecCCCC--cceeEEEeccceEEEEec
Q 001379 133 IHIVIPERPTECAVFNVIADC-PRDSVQFIEWSPTSC--PRALLIANFYGRVTIWTQ 186 (1090)
Q Consensus 133 ihIviPerPtE~avfnv~ads-p~d~vq~ieWSp~~c--pRALLiAnf~GRvtIWtQ 186 (1090)
|.|...+.-.+...+....+. ..+.|..+.|+|..- -+-|+.+..+|.|.||.=
T Consensus 46 v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~ 102 (366)
T 3k26_A 46 VTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINP 102 (366)
T ss_dssp EEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECT
T ss_pred EEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEc
Confidence 555555555555555544433 456799999999876 367888999999999963
No 31
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=37.26 E-value=74 Score=31.05 Aligned_cols=51 Identities=8% Similarity=0.028 Sum_probs=39.8
Q ss_pred EEEecCCCCcceeEEEeecCCCCCceEEEEecCCCCcceeEEEeccceEEEEe
Q 001379 133 IHIVIPERPTECAVFNVIADCPRDSVQFIEWSPTSCPRALLIANFYGRVTIWT 185 (1090)
Q Consensus 133 ihIviPerPtE~avfnv~adsp~d~vq~ieWSp~~cpRALLiAnf~GRvtIWt 185 (1090)
|.|...+......++......-.+.|..+.|||.. +-|+.+..+|.|.||.
T Consensus 105 v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg--~~l~sgs~d~~i~iwd 155 (344)
T 4gqb_B 105 VELWELDENETLIVSKFCKYEHDDIVSTVSVLSSG--TQAVSGSKDICIKVWD 155 (344)
T ss_dssp EEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTS--SEEEEEETTSCEEEEE
T ss_pred EEEEeccCCCceeEeeccccCCCCCEEEEEECCCC--CEEEEEeCCCeEEEEE
Confidence 55666666666666666666677899999999975 6788899999999995
No 32
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=36.81 E-value=90 Score=28.91 Aligned_cols=35 Identities=29% Similarity=0.369 Sum_probs=28.6
Q ss_pred CCCCceEEEEecCCC-CcceeEEEeccceEEEEecC
Q 001379 153 CPRDSVQFIEWSPTS-CPRALLIANFYGRVTIWTQP 187 (1090)
Q Consensus 153 sp~d~vq~ieWSp~~-cpRALLiAnf~GRvtIWtQP 187 (1090)
.-.+.|..+.|+|.. ..+-|+.+..+|.|.||..-
T Consensus 202 ~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~ 237 (297)
T 2pm7_B 202 GHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQD 237 (297)
T ss_dssp CCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred CCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeC
Confidence 346789999999986 34678888999999999753
No 33
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=35.90 E-value=77 Score=30.60 Aligned_cols=38 Identities=26% Similarity=0.393 Sum_probs=27.8
Q ss_pred CCCceEEEEecCCCCcceeEEEeccceEEEEecCCCCCC
Q 001379 154 PRDSVQFIEWSPTSCPRALLIANFYGRVTIWTQPSHGPA 192 (1090)
Q Consensus 154 p~d~vq~ieWSp~~cpRALLiAnf~GRvtIWtQPsqg~~ 192 (1090)
-.+.|..+.|||.. .+-|+.+-.+|+|.||.=|+.|..
T Consensus 310 H~~~V~~vafsP~d-~~~l~s~s~Dg~v~iW~~~~~~~~ 347 (357)
T 4g56_B 310 HRDFVTGVAWSPLD-HSKFTTVGWDHKVLHHHLPSEGRT 347 (357)
T ss_dssp CSSCEEEEEECSSS-TTEEEEEETTSCEEEEECC-----
T ss_pred CCCCEEEEEEeCCC-CCEEEEEcCCCeEEEEECCCCCcc
Confidence 46789999999853 456778899999999998887654
No 34
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=34.70 E-value=98 Score=29.41 Aligned_cols=68 Identities=12% Similarity=0.183 Sum_probs=44.8
Q ss_pred chhhhhccccceeccccccccCCCCCCCCCceeeEEEecCCCCcceeEEEeecCCCCCceEEEEecCCCCcceeEEEecc
Q 001379 99 SAVAWCGKLNAIACASETCARIPSSNANTPFWIPIHIVIPERPTECAVFNVIADCPRDSVQFIEWSPTSCPRALLIANFY 178 (1090)
Q Consensus 99 savawc~klN~iaca~eTCarip~S~~np~fwiPihIviPerPtE~avfnv~adsp~d~vq~ieWSp~~cpRALLiAnf~ 178 (1090)
.+++|....+.|+++++... |.|...+.......+ ....+.|..+.|+|.. +-|+.+..+
T Consensus 210 ~~l~~spd~~~l~s~s~dg~--------------i~iwd~~~~~~~~~~----~~h~~~v~~~~~sp~~--~~l~s~s~D 269 (321)
T 3ow8_A 210 RSLTFSPDSQLLVTASDDGY--------------IKIYDVQHANLAGTL----SGHASWVLNVAFCPDD--THFVSSSSD 269 (321)
T ss_dssp CEEEECTTSCEEEEECTTSC--------------EEEEETTTCCEEEEE----CCCSSCEEEEEECTTS--SEEEEEETT
T ss_pred eEEEEcCCCCEEEEEcCCCe--------------EEEEECCCcceeEEE----cCCCCceEEEEECCCC--CEEEEEeCC
Confidence 45666666667777654321 444444444333332 2456789999999975 568899999
Q ss_pred ceEEEEec
Q 001379 179 GRVTIWTQ 186 (1090)
Q Consensus 179 GRvtIWtQ 186 (1090)
|.|.||.=
T Consensus 270 ~~v~iwd~ 277 (321)
T 3ow8_A 270 KSVKVWDV 277 (321)
T ss_dssp SCEEEEET
T ss_pred CcEEEEeC
Confidence 99999963
No 35
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=34.39 E-value=79 Score=28.68 Aligned_cols=70 Identities=11% Similarity=0.059 Sum_probs=46.3
Q ss_pred ccchhhhhcccc-ceeccccccccCCCCCCCCCceeeEEEecC-CCCcceeEEEeecCCCCCceEEEEecCCCCcceeEE
Q 001379 97 NFSAVAWCGKLN-AIACASETCARIPSSNANTPFWIPIHIVIP-ERPTECAVFNVIADCPRDSVQFIEWSPTSCPRALLI 174 (1090)
Q Consensus 97 nFsavawc~klN-~iaca~eTCarip~S~~np~fwiPihIviP-erPtE~avfnv~adsp~d~vq~ieWSp~~cpRALLi 174 (1090)
...+++|+..-+ .|+++++.. =|.+... +.- +...+ ....-.+.|..|.|+| .+-|+.
T Consensus 58 ~v~~~~~~~~~~~~l~~~~~dg--------------~i~~wd~~~~~-~~~~~--~~~~~~~~v~~l~~~~---~~~l~s 117 (342)
T 1yfq_A 58 PLLCCNFIDNTDLQIYVGTVQG--------------EILKVDLIGSP-SFQAL--TNNEANLGICRICKYG---DDKLIA 117 (342)
T ss_dssp CEEEEEEEESSSEEEEEEETTS--------------CEEEECSSSSS-SEEEC--BSCCCCSCEEEEEEET---TTEEEE
T ss_pred ceEEEEECCCCCcEEEEEcCCC--------------eEEEEEeccCC-ceEec--cccCCCCceEEEEeCC---CCEEEE
Confidence 456778887777 777775431 1445544 332 22111 1111567899999999 788999
Q ss_pred EeccceEEEEec
Q 001379 175 ANFYGRVTIWTQ 186 (1090)
Q Consensus 175 Anf~GRvtIWtQ 186 (1090)
+..+|.|.||.-
T Consensus 118 ~~~d~~i~iwd~ 129 (342)
T 1yfq_A 118 ASWDGLIEVIDP 129 (342)
T ss_dssp EETTSEEEEECH
T ss_pred EcCCCeEEEEcc
Confidence 999999999964
No 36
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=33.85 E-value=1.1e+02 Score=27.76 Aligned_cols=35 Identities=31% Similarity=0.380 Sum_probs=28.0
Q ss_pred CCCCceEEEEecCCCC-cceeEEEeccceEEEEecC
Q 001379 153 CPRDSVQFIEWSPTSC-PRALLIANFYGRVTIWTQP 187 (1090)
Q Consensus 153 sp~d~vq~ieWSp~~c-pRALLiAnf~GRvtIWtQP 187 (1090)
...+.|..+.|+|..- .+-|+.+..+|.|.||.-.
T Consensus 204 ~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~ 239 (379)
T 3jrp_A 204 GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD 239 (379)
T ss_dssp CCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred cccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCC
Confidence 3457899999999742 4778889999999999643
No 37
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=33.35 E-value=1.1e+02 Score=28.32 Aligned_cols=34 Identities=21% Similarity=0.345 Sum_probs=27.9
Q ss_pred CCCceEEEEecCCCCcceeEEEeccceEEEEecCCC
Q 001379 154 PRDSVQFIEWSPTSCPRALLIANFYGRVTIWTQPSH 189 (1090)
Q Consensus 154 p~d~vq~ieWSp~~cpRALLiAnf~GRvtIWtQPsq 189 (1090)
..+.|..+.|||.. +-|..+..+|+|.||.....
T Consensus 253 ~~~~v~~~~~s~~g--~~las~~~D~~v~lw~~~~~ 286 (297)
T 2pm7_B 253 FPDVLWRASWSLSG--NVLALSGGDNKVTLWKENLE 286 (297)
T ss_dssp CSSCEEEEEECSSS--CCEEEEETTSCEEEEEECTT
T ss_pred CCCcEEEEEECCCC--CEEEEEcCCCcEEEEEECCC
Confidence 35789999999975 67888899999999986544
No 38
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=32.90 E-value=96 Score=29.80 Aligned_cols=72 Identities=14% Similarity=0.156 Sum_probs=47.1
Q ss_pred cchhhhhccccceeccccccccCCCCCCCCCceeeEEEecCCCCcceeEEEeecCCCCCceEEEEecCCCCcceeEEEec
Q 001379 98 FSAVAWCGKLNAIACASETCARIPSSNANTPFWIPIHIVIPERPTECAVFNVIADCPRDSVQFIEWSPTSCPRALLIANF 177 (1090)
Q Consensus 98 Fsavawc~klN~iaca~eTCarip~S~~np~fwiPihIviPerPtE~avfnv~adsp~d~vq~ieWSp~~cpRALLiAnf 177 (1090)
.++++|....+.|+.++... =|.|...+....+..|. .....|..+.|+|....+-|+.+..
T Consensus 157 v~~~~~~~~~~~l~t~s~D~--------------~v~lwd~~~~~~~~~~~----~h~~~v~~~~~~~~~~g~~l~sgs~ 218 (354)
T 2pbi_B 157 LSACSFTNSDMQILTASGDG--------------TCALWDVESGQLLQSFH----GHGADVLCLDLAPSETGNTFVSGGC 218 (354)
T ss_dssp EEEEEECSSSSEEEEEETTS--------------EEEEEETTTCCEEEEEE----CCSSCEEEEEECCCSSCCEEEEEET
T ss_pred EEEEEEeCCCCEEEEEeCCC--------------cEEEEeCCCCeEEEEEc----CCCCCeEEEEEEeCCCCCEEEEEeC
Confidence 34566665555555443311 14455555554444443 3456799999999877788999999
Q ss_pred cceEEEEecC
Q 001379 178 YGRVTIWTQP 187 (1090)
Q Consensus 178 ~GRvtIWtQP 187 (1090)
+|.|.||.-.
T Consensus 219 Dg~v~~wd~~ 228 (354)
T 2pbi_B 219 DKKAMVWDMR 228 (354)
T ss_dssp TSCEEEEETT
T ss_pred CCeEEEEECC
Confidence 9999999743
No 39
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=32.71 E-value=1.2e+02 Score=27.82 Aligned_cols=69 Identities=22% Similarity=0.316 Sum_probs=47.4
Q ss_pred cchhhhhccccceeccccccccCCCCCCCCCceeeEEEecCCCCcceeEEEeecCCCCCceEEEEecCCCCcceeEEEec
Q 001379 98 FSAVAWCGKLNAIACASETCARIPSSNANTPFWIPIHIVIPERPTECAVFNVIADCPRDSVQFIEWSPTSCPRALLIANF 177 (1090)
Q Consensus 98 Fsavawc~klN~iaca~eTCarip~S~~np~fwiPihIviPerPtE~avfnv~adsp~d~vq~ieWSp~~cpRALLiAnf 177 (1090)
..+++|....+.|+++++.. -|.|...+..+....|. ...+.|..+.|+|.. +-|+.+..
T Consensus 68 v~~~~~~~~~~~l~s~~~d~--------------~i~vwd~~~~~~~~~~~----~~~~~v~~~~~~~~~--~~l~s~~~ 127 (312)
T 4ery_A 68 ISDVAWSSDSNLLVSASDDK--------------TLKIWDVSSGKCLKTLK----GHSNYVFCCNFNPQS--NLIVSGSF 127 (312)
T ss_dssp EEEEEECTTSSEEEEEETTS--------------EEEEEETTTCCEEEEEE----CCSSCEEEEEECSSS--SEEEEEET
T ss_pred eEEEEEcCCCCEEEEECCCC--------------EEEEEECCCCcEEEEEc----CCCCCEEEEEEcCCC--CEEEEEeC
Confidence 45677877778787775432 14555555444444443 346779999999964 67888999
Q ss_pred cceEEEEec
Q 001379 178 YGRVTIWTQ 186 (1090)
Q Consensus 178 ~GRvtIWtQ 186 (1090)
+|.|.||.-
T Consensus 128 d~~i~iwd~ 136 (312)
T 4ery_A 128 DESVRIWDV 136 (312)
T ss_dssp TSCEEEEET
T ss_pred CCcEEEEEC
Confidence 999999963
No 40
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=32.52 E-value=48 Score=29.92 Aligned_cols=32 Identities=22% Similarity=0.319 Sum_probs=27.2
Q ss_pred CCCCceEEEEecCCCCcceeEEEeccceEEEEe
Q 001379 153 CPRDSVQFIEWSPTSCPRALLIANFYGRVTIWT 185 (1090)
Q Consensus 153 sp~d~vq~ieWSp~~cpRALLiAnf~GRvtIWt 185 (1090)
+=.+.|..|.|+|. .++-|+.+-.+|.|.||.
T Consensus 36 GH~~~V~~v~~sp~-~~~~l~S~s~D~~i~vWd 67 (340)
T 4aow_A 36 GHNGWVTQIATTPQ-FPDMILSASRDKTIIMWK 67 (340)
T ss_dssp CCSSCEEEEEECTT-CTTEEEEEETTSCEEEEE
T ss_pred CccCCEEEEEEeCC-CCCEEEEEcCCCeEEEEE
Confidence 45789999999986 356788889999999996
No 41
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=32.36 E-value=1.2e+02 Score=28.20 Aligned_cols=66 Identities=20% Similarity=0.216 Sum_probs=45.0
Q ss_pred hhhhhccccceeccccccccCCCCCCCCCceeeEEEecCCCCcceeEEEeecCCCCCceEEEEecCCCCcceeEEEeccc
Q 001379 100 AVAWCGKLNAIACASETCARIPSSNANTPFWIPIHIVIPERPTECAVFNVIADCPRDSVQFIEWSPTSCPRALLIANFYG 179 (1090)
Q Consensus 100 avawc~klN~iaca~eTCarip~S~~np~fwiPihIviPerPtE~avfnv~adsp~d~vq~ieWSp~~cpRALLiAnf~G 179 (1090)
++++....|.|+.+++.. =|.|...+.-+.+..|. .-.+.|..|.|+|.. +-|+.+..+|
T Consensus 60 ~~~~~~~~~~l~s~s~d~--------------~i~vwd~~~~~~~~~~~----~h~~~v~~~~~~~~~--~~l~sgs~D~ 119 (304)
T 2ynn_A 60 AGKFIARKNWIIVGSDDF--------------RIRVFNYNTGEKVVDFE----AHPDYIRSIAVHPTK--PYVLSGSDDL 119 (304)
T ss_dssp EEEEEGGGTEEEEEETTS--------------EEEEEETTTCCEEEEEE----CCSSCEEEEEECSSS--SEEEEEETTS
T ss_pred EEEEeCCCCEEEEECCCC--------------EEEEEECCCCcEEEEEe----CCCCcEEEEEEcCCC--CEEEEECCCC
Confidence 455555667777765531 14555555544444443 356789999999975 5688899999
Q ss_pred eEEEEe
Q 001379 180 RVTIWT 185 (1090)
Q Consensus 180 RvtIWt 185 (1090)
.|.||.
T Consensus 120 ~v~lWd 125 (304)
T 2ynn_A 120 TVKLWN 125 (304)
T ss_dssp CEEEEE
T ss_pred eEEEEE
Confidence 999996
No 42
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=31.91 E-value=40 Score=33.08 Aligned_cols=31 Identities=19% Similarity=0.556 Sum_probs=25.3
Q ss_pred CCceEEEEecCCCCcceeEEEeccceEEEEec
Q 001379 155 RDSVQFIEWSPTSCPRALLIANFYGRVTIWTQ 186 (1090)
Q Consensus 155 ~d~vq~ieWSp~~cpRALLiAnf~GRvtIWtQ 186 (1090)
.+.|++|+|+|. -++-|..+..+|.|.||.=
T Consensus 119 ~~~V~~l~~~P~-~~~~lasGs~dg~i~lWd~ 149 (435)
T 4e54_B 119 DRRATSLAWHPT-HPSTVAVGSKGGDIMLWNF 149 (435)
T ss_dssp SSCEEEEEECSS-CTTCEEEEETTSCEEEECS
T ss_pred CCCEEEEEEeCC-CCCEEEEEeCCCEEEEEEC
Confidence 356999999995 3567788899999999953
No 43
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=31.89 E-value=95 Score=29.46 Aligned_cols=33 Identities=15% Similarity=0.480 Sum_probs=29.2
Q ss_pred CceEEEEecCCCCcceeEEEeccceEEEEecCC
Q 001379 156 DSVQFIEWSPTSCPRALLIANFYGRVTIWTQPS 188 (1090)
Q Consensus 156 d~vq~ieWSp~~cpRALLiAnf~GRvtIWtQPs 188 (1090)
+.|..|.|+|..-+.-|+.+..+|.|.||.-.+
T Consensus 94 ~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~ 126 (447)
T 3dw8_B 94 EKINKIRWLPQKNAAQFLLSTNDKTIKLWKISE 126 (447)
T ss_dssp CCCCEEEECCCCSSSEEEEEECSSCEEEEEEEE
T ss_pred CceEEEEEcCCCCcceEEEeCCCCeEEEEeccc
Confidence 779999999998778899999999999997543
No 44
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=31.22 E-value=1.5e+02 Score=27.38 Aligned_cols=34 Identities=24% Similarity=0.428 Sum_probs=28.1
Q ss_pred CCCceEEEEecCCCCcceeEEEeccceEEEEecCCC
Q 001379 154 PRDSVQFIEWSPTSCPRALLIANFYGRVTIWTQPSH 189 (1090)
Q Consensus 154 p~d~vq~ieWSp~~cpRALLiAnf~GRvtIWtQPsq 189 (1090)
..+.|..+.|+|.. +-|+.+..+|.|.||.-.+.
T Consensus 246 ~~~~i~~~~~~~~~--~~l~~~~~d~~i~i~d~~~~ 279 (425)
T 1r5m_A 246 HHGPISVLEFNDTN--KLLLSASDDGTLRIWHGGNG 279 (425)
T ss_dssp CSSCEEEEEEETTT--TEEEEEETTSCEEEECSSSB
T ss_pred CCCceEEEEECCCC--CEEEEEcCCCEEEEEECCCC
Confidence 45679999999965 58889999999999986554
No 45
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=30.81 E-value=84 Score=29.55 Aligned_cols=73 Identities=12% Similarity=0.219 Sum_probs=48.4
Q ss_pred cchhhhhccc-cceeccccccccCCCCCCCCCceeeEEEecCCCCcceeEEEeecCCCCCceEEEEecCCCCcceeEEEe
Q 001379 98 FSAVAWCGKL-NAIACASETCARIPSSNANTPFWIPIHIVIPERPTECAVFNVIADCPRDSVQFIEWSPTSCPRALLIAN 176 (1090)
Q Consensus 98 Fsavawc~kl-N~iaca~eTCarip~S~~np~fwiPihIviPerPtE~avfnv~adsp~d~vq~ieWSp~~cpRALLiAn 176 (1090)
..+++|+..- +.++.+++.. . |.|...+.......+.. ....+.|..+.|+|.. .+-|+.+.
T Consensus 76 v~~~~~~~~~~~~l~s~~~dg-------~-------i~iwd~~~~~~~~~~~~--~~h~~~v~~~~~~~~~-~~~l~s~~ 138 (383)
T 3ei3_B 76 VTSLEWHPTHPTTVAVGSKGG-------D-------IILWDYDVQNKTSFIQG--MGPGDAITGMKFNQFN-TNQLFVSS 138 (383)
T ss_dssp EEEEEECSSCTTEEEEEEBTS-------C-------EEEEETTSTTCEEEECC--CSTTCBEEEEEEETTE-EEEEEEEE
T ss_pred EEEEEECCCCCCEEEEEcCCC-------e-------EEEEeCCCcccceeeec--CCcCCceeEEEeCCCC-CCEEEEEe
Confidence 4456777665 6777765421 1 45555555444444322 3466789999999853 56788899
Q ss_pred ccceEEEEecC
Q 001379 177 FYGRVTIWTQP 187 (1090)
Q Consensus 177 f~GRvtIWtQP 187 (1090)
.+|.|.||.-.
T Consensus 139 ~d~~i~iwd~~ 149 (383)
T 3ei3_B 139 IRGATTLRDFS 149 (383)
T ss_dssp TTTEEEEEETT
T ss_pred CCCEEEEEECC
Confidence 99999999754
No 46
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=30.06 E-value=74 Score=28.73 Aligned_cols=54 Identities=13% Similarity=0.199 Sum_probs=38.5
Q ss_pred hhheeeeccCCceEEeeeeeCceeeeeCCCCCcccceeeecccccccCccCcccc
Q 001379 559 SLARIVYSAHGGEIAIALLRGGVHIFSGPNFAPVDNYQISVGSAIAAPAFSSTSC 613 (1090)
Q Consensus 559 tLARiVySAhgGEiavAfl~GgVhiFSG~nftpVdnyqInVgsaIa~PaFSsTSC 613 (1090)
.+-.+.|+..|.-|+.+-..|.|+||.-.+...+..+.- -...|..-+||+..-
T Consensus 275 ~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~g~ 328 (368)
T 3mmy_A 275 AVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQ-LDQPISACCFNHNGN 328 (368)
T ss_dssp CEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCC-CSSCEEEEEECTTSS
T ss_pred ceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecC-CCCCceEEEECCCCC
Confidence 355677888788888888888999998887777655542 245566677877654
No 47
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=28.83 E-value=59 Score=29.37 Aligned_cols=30 Identities=17% Similarity=0.393 Sum_probs=25.4
Q ss_pred CCCceEEEEecCCCCcceeEEEeccceEEEEe
Q 001379 154 PRDSVQFIEWSPTSCPRALLIANFYGRVTIWT 185 (1090)
Q Consensus 154 p~d~vq~ieWSp~~cpRALLiAnf~GRvtIWt 185 (1090)
-.+.|..+.|||.+ +-|+.+..+|.|.||.
T Consensus 305 h~~~v~~l~~s~dg--~~l~sgs~Dg~v~iW~ 334 (340)
T 4aow_A 305 EPPQCTSLAWSADG--QTLFAGYTDNLVRVWQ 334 (340)
T ss_dssp CCCCEEEEEECTTS--SEEEEEETTSCEEEEE
T ss_pred CCCCEEEEEECCCC--CEEEEEeCCCEEEEEe
Confidence 34579999999975 6788899999999995
No 48
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=28.11 E-value=57 Score=30.94 Aligned_cols=34 Identities=24% Similarity=0.343 Sum_probs=27.9
Q ss_pred CCCceEEEEecCCCCcceeEEEeccceEEEEecCCC
Q 001379 154 PRDSVQFIEWSPTSCPRALLIANFYGRVTIWTQPSH 189 (1090)
Q Consensus 154 p~d~vq~ieWSp~~cpRALLiAnf~GRvtIWtQPsq 189 (1090)
..|.|..++|||. .+-|+.+..+|+|.||.=.+.
T Consensus 27 ~~~~V~~v~~s~~--g~~la~g~~dg~v~iw~~~~~ 60 (447)
T 3dw8_B 27 EADIISTVEFNHS--GELLATGDKGGRVVIFQQEQE 60 (447)
T ss_dssp GGGSEEEEEECSS--SSEEEEEETTSEEEEEEECC-
T ss_pred ccCcEEEEEECCC--CCEEEEEcCCCeEEEEEecCC
Confidence 3588999999995 467888999999999986554
No 49
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=27.60 E-value=83 Score=28.53 Aligned_cols=37 Identities=24% Similarity=0.455 Sum_probs=30.0
Q ss_pred cCCCCCceEEEEecCCCCcceeEEEeccceEEEEecCCC
Q 001379 151 ADCPRDSVQFIEWSPTSCPRALLIANFYGRVTIWTQPSH 189 (1090)
Q Consensus 151 adsp~d~vq~ieWSp~~cpRALLiAnf~GRvtIWtQPsq 189 (1090)
.....+.|..+.|+|. .+-|+.+..+|.|.||.-.+.
T Consensus 7 ~~~h~~~v~~~~~s~~--~~~l~~~~~d~~v~iw~~~~~ 43 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPS--KSLLLITSWDGSLTVYKFDIQ 43 (342)
T ss_dssp SSCCSSCEEEEEEEGG--GTEEEEEETTSEEEEEEEETT
T ss_pred ccCCCCcEEEEEEcCC--CCEEEEEcCCCeEEEEEeCCC
Confidence 3467789999999995 467888999999999975543
No 50
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=27.38 E-value=1e+02 Score=32.65 Aligned_cols=34 Identities=12% Similarity=0.091 Sum_probs=26.5
Q ss_pred CCCceEEEEecCCC--C--cceeEEEeccceEEEEecC
Q 001379 154 PRDSVQFIEWSPTS--C--PRALLIANFYGRVTIWTQP 187 (1090)
Q Consensus 154 p~d~vq~ieWSp~~--c--pRALLiAnf~GRvtIWtQP 187 (1090)
..+.|..+.|+|.+ . .+-|..+..+|.|.||.=.
T Consensus 206 ~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~ 243 (524)
T 2j04_B 206 SFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEII 243 (524)
T ss_dssp CCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECC
T ss_pred cCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcC
Confidence 35679999999973 1 3567778999999999754
No 51
>2g31_A Reticulon-4; NOGO, helix, signaling protein; NMR {Homo sapiens} PDB: 2jv5_A
Probab=26.53 E-value=27 Score=29.27 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=20.4
Q ss_pred HHHHHHHHHhHHHHHHHHhhhh
Q 001379 790 IQAYVDAVLDLASHFITRLRRY 811 (1090)
Q Consensus 790 iQaYVDavlDLashfitRLRrY 811 (1090)
++.|+|.+++...+++++|||-
T Consensus 34 ~~~~~~~~v~~in~~l~~lrrL 55 (60)
T 2g31_A 34 VQKYSNSALGHVNCTIKELRRL 55 (60)
T ss_dssp HHHHHHHGGGTCHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHhHh
Confidence 6899999999999999999985
No 52
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=26.41 E-value=1.5e+02 Score=28.16 Aligned_cols=47 Identities=15% Similarity=0.300 Sum_probs=34.4
Q ss_pred eEEEecCCCCcceeEEEeecCCCCCceEEEEecCCCCcceeEEEec-cceEEEEe
Q 001379 132 PIHIVIPERPTECAVFNVIADCPRDSVQFIEWSPTSCPRALLIANF-YGRVTIWT 185 (1090)
Q Consensus 132 PihIviPerPtE~avfnv~adsp~d~vq~ieWSp~~cpRALLiAnf-~GRvtIWt 185 (1090)
-|+++..+.-+....+.. .+.+..+.|+|.. +-|++++. +|+|.||.
T Consensus 382 ~v~~~d~~~~~~~~~~~~-----~~~~~~~~~s~dg--~~l~~~~~~d~~i~v~~ 429 (433)
T 3bws_A 382 KVYVIDTTTDTVKEFWEA-----GNQPTGLDVSPDN--RYLVISDFLDHQIRVYR 429 (433)
T ss_dssp EEEEEETTTTEEEEEEEC-----SSSEEEEEECTTS--CEEEEEETTTTEEEEEE
T ss_pred EEEEEECCCCcEEEEecC-----CCCCceEEEcCCC--CEEEEEECCCCeEEEEE
Confidence 366777666655555543 4578999999964 67778875 99999995
No 53
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=26.29 E-value=1.8e+02 Score=26.31 Aligned_cols=32 Identities=13% Similarity=0.334 Sum_probs=27.0
Q ss_pred CCceEEEEecCCC-CcceeEEEeccceEEEEec
Q 001379 155 RDSVQFIEWSPTS-CPRALLIANFYGRVTIWTQ 186 (1090)
Q Consensus 155 ~d~vq~ieWSp~~-cpRALLiAnf~GRvtIWtQ 186 (1090)
.+.|..+.|+|.. ..+-|+++..+|+|.||.-
T Consensus 209 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~ 241 (357)
T 3i2n_A 209 KNGVCSLEFDRKDISMNKLVATSLEGKFHVFDM 241 (357)
T ss_dssp SSCEEEEEESCSSSSCCEEEEEESTTEEEEEEE
T ss_pred CCceEEEEcCCCCCCCCEEEEECCCCeEEEEeC
Confidence 5679999999965 5677899999999999953
No 54
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=26.04 E-value=69 Score=29.84 Aligned_cols=33 Identities=6% Similarity=0.059 Sum_probs=28.4
Q ss_pred CCCCceEEEEecCCCCcceeEEEeccceEEEEecCCC
Q 001379 153 CPRDSVQFIEWSPTSCPRALLIANFYGRVTIWTQPSH 189 (1090)
Q Consensus 153 sp~d~vq~ieWSp~~cpRALLiAnf~GRvtIWtQPsq 189 (1090)
.-.+.|..|.|+| +-|+.+..+|.|.||.-.+.
T Consensus 14 ~h~~~i~~~~~~~----~~l~s~~~dg~i~iw~~~~~ 46 (397)
T 1sq9_A 14 AHDADIFSVSACN----SFTVSCSGDGYLKVWDNKLL 46 (397)
T ss_dssp CSSSCEEEEEECS----SEEEEEETTSEEEEEESBCC
T ss_pred hhhcCeEEEEecC----CeEEEEcCCCEEEEEECCCc
Confidence 4567899999988 78999999999999987654
No 55
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=25.16 E-value=89 Score=30.16 Aligned_cols=72 Identities=11% Similarity=0.102 Sum_probs=42.0
Q ss_pred cchhhhhccccceeccccccccCCCCCCCCCceeeEEEecCCCCcceeEEEeecCCCCCceEEEEecCCCCcceeEEEec
Q 001379 98 FSAVAWCGKLNAIACASETCARIPSSNANTPFWIPIHIVIPERPTECAVFNVIADCPRDSVQFIEWSPTSCPRALLIANF 177 (1090)
Q Consensus 98 Fsavawc~klN~iaca~eTCarip~S~~np~fwiPihIviPerPtE~avfnv~adsp~d~vq~ieWSp~~cpRALLiAnf 177 (1090)
..+++|...-..+++..+-. |.|...+......+.......-.+.|..+.|+|.. +-|+.+..
T Consensus 97 V~~~~~s~d~~~l~~s~dg~---------------v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg--~~l~sgs~ 159 (357)
T 4g56_B 97 VTDVAWVSEKGILVASDSGA---------------VELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDG--TQAVSGGK 159 (357)
T ss_dssp EEEEEEETTTEEEEEETTSC---------------EEEC--------CCCCEEECCCSSCEEEEEECSSS--SEEEEEET
T ss_pred EEEEEEcCCCCEEEEECCCE---------------EEEeeccccceeEEEeeccCCCCCCEEEEEECCCC--CEEEEEeC
Confidence 35677777666666543322 33333333222222223333446789999999975 67888999
Q ss_pred cceEEEEec
Q 001379 178 YGRVTIWTQ 186 (1090)
Q Consensus 178 ~GRvtIWtQ 186 (1090)
+|.|.||.-
T Consensus 160 dg~v~iwd~ 168 (357)
T 4g56_B 160 DFSVKVWDL 168 (357)
T ss_dssp TSCEEEEET
T ss_pred CCeEEEEEC
Confidence 999999964
No 56
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=24.61 E-value=1.7e+02 Score=27.63 Aligned_cols=30 Identities=10% Similarity=0.264 Sum_probs=25.2
Q ss_pred CCceEEEEecCCCCcceeEEEeccceEEEEec
Q 001379 155 RDSVQFIEWSPTSCPRALLIANFYGRVTIWTQ 186 (1090)
Q Consensus 155 ~d~vq~ieWSp~~cpRALLiAnf~GRvtIWtQ 186 (1090)
.+.|..+.|+|.. +-|+.+..+|.|.||.-
T Consensus 309 ~~~v~~~~~sp~g--~~l~sg~~Dg~v~~w~~ 338 (343)
T 2xzm_R 309 NPQCTSLAWNALG--KKLFAGFTDGVIRTFSF 338 (343)
T ss_dssp CCCEEEEEECSSS--CCEEEEETTSEEEEEEE
T ss_pred CCceEEEEECCCC--CeEEEecCCceEEEEEE
Confidence 4569999999976 56888899999999963
No 57
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=24.47 E-value=1.8e+02 Score=28.20 Aligned_cols=31 Identities=16% Similarity=0.393 Sum_probs=26.7
Q ss_pred CCCceEEEEecCCCCcceeEEEeccceEEEEec
Q 001379 154 PRDSVQFIEWSPTSCPRALLIANFYGRVTIWTQ 186 (1090)
Q Consensus 154 p~d~vq~ieWSp~~cpRALLiAnf~GRvtIWtQ 186 (1090)
-.+.|..+.|+|.. +-|+.+..+|+|.||.=
T Consensus 255 h~~~v~~v~~~~~g--~~l~s~s~d~~v~~wd~ 285 (393)
T 1erj_A 255 HKDSVYSVVFTRDG--QSVVSGSLDRSVKLWNL 285 (393)
T ss_dssp CSSCEEEEEECTTS--SEEEEEETTSEEEEEEC
T ss_pred CCCCEEEEEECCCC--CEEEEEeCCCEEEEEEC
Confidence 45789999999975 67889999999999974
No 58
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=24.19 E-value=10 Score=31.46 Aligned_cols=32 Identities=34% Similarity=0.685 Sum_probs=21.8
Q ss_pred cccCCcccccccceEEecCCceEEeeecccCCceEEEEEecCCCC
Q 001379 296 LLGAGPSGIMAADVIITDSGAMHVAGVPIVNPSTVVVWEVTPGPG 340 (1090)
Q Consensus 296 lLg~GpSGIma~DAIItdsGamhVAGVpi~NPSTVVVWEV~pg~g 340 (1090)
++|+||+|..+|-.. .. +|+ .|+|.|=.+.+|
T Consensus 7 IIGaGpaGL~aA~~L-a~------~G~------~V~v~Ek~~~~G 38 (336)
T 3kkj_A 7 IIGTGIAGLSAAQAL-TA------AGH------QVHLFDKSRGSG 38 (336)
T ss_dssp EECCSHHHHHHHHHH-HH------TTC------CEEEECSSSSSC
T ss_pred EECcCHHHHHHHHHH-HH------CCC------CEEEEECCCCCC
Confidence 579999999998532 22 333 478888766665
No 59
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=23.43 E-value=1.4e+02 Score=28.34 Aligned_cols=37 Identities=22% Similarity=0.513 Sum_probs=28.5
Q ss_pred EEeecCCCCCceEEEEecCCCCcceeEEEeccceEEEEe
Q 001379 147 FNVIADCPRDSVQFIEWSPTSCPRALLIANFYGRVTIWT 185 (1090)
Q Consensus 147 fnv~adsp~d~vq~ieWSp~~cpRALLiAnf~GRvtIWt 185 (1090)
+....+-+...|..+.|||.. +-|+.+-.+|.|.||.
T Consensus 8 ~~~~~~h~~~~v~~l~~sp~g--~~las~~~D~~i~iw~ 44 (345)
T 3fm0_A 8 LGRVPAHPDSRCWFLAWNPAG--TLLASCGGDRRIRIWG 44 (345)
T ss_dssp EEEECCSTTSCEEEEEECTTS--SCEEEEETTSCEEEEE
T ss_pred eeeecCCCCCcEEEEEECCCC--CEEEEEcCCCeEEEEE
Confidence 334444455589999999975 5678889999999995
No 60
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=23.43 E-value=84 Score=29.23 Aligned_cols=33 Identities=30% Similarity=0.570 Sum_probs=27.6
Q ss_pred CCCceEEEEecCCCCcceeEEEeccceEEEEecCC
Q 001379 154 PRDSVQFIEWSPTSCPRALLIANFYGRVTIWTQPS 188 (1090)
Q Consensus 154 p~d~vq~ieWSp~~cpRALLiAnf~GRvtIWtQPs 188 (1090)
-.|.|..|.|||.. +-|+.+-.+|.|.||.-.+
T Consensus 12 h~~~V~~~~fsp~~--~~l~s~~~dg~v~lWd~~~ 44 (304)
T 2ynn_A 12 RSDRVKGIDFHPTE--PWVLTTLYSGRVELWNYET 44 (304)
T ss_dssp ECSCEEEEEECSSS--SEEEEEETTSEEEEEETTT
T ss_pred CCCceEEEEECCCC--CEEEEEcCCCcEEEEECCC
Confidence 45789999999976 6788899999999997443
No 61
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=23.24 E-value=92 Score=29.25 Aligned_cols=34 Identities=29% Similarity=0.485 Sum_probs=27.9
Q ss_pred CCCCceEEEEecCCCCc--ceeEEEeccceEEEEec
Q 001379 153 CPRDSVQFIEWSPTSCP--RALLIANFYGRVTIWTQ 186 (1090)
Q Consensus 153 sp~d~vq~ieWSp~~cp--RALLiAnf~GRvtIWtQ 186 (1090)
.-.++|..+.|+|.... +-|+.+..+|+|.||.-
T Consensus 210 ~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~ 245 (316)
T 3bg1_A 210 AHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTC 245 (316)
T ss_dssp CCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEEC
T ss_pred cCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEc
Confidence 34578999999998643 67888999999999963
No 62
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=22.87 E-value=1.4e+02 Score=28.88 Aligned_cols=34 Identities=15% Similarity=0.318 Sum_probs=27.6
Q ss_pred CCCCCceEEEEecCCCCcceeEEEeccceEEEEecC
Q 001379 152 DCPRDSVQFIEWSPTSCPRALLIANFYGRVTIWTQP 187 (1090)
Q Consensus 152 dsp~d~vq~ieWSp~~cpRALLiAnf~GRvtIWtQP 187 (1090)
..-.+.|..+.|||.+ +.|+.+-.+|.|.||.-.
T Consensus 341 ~~h~~~v~~l~~s~dg--~~l~sgs~D~~i~iW~~~ 374 (380)
T 3iz6_a 341 NSHEGRISCLGLSSDG--SALCTGSWDKNLKIWAFS 374 (380)
T ss_dssp SSCCCCCCEEEECSSS--SEEEEECTTSCEEEEECC
T ss_pred CCCCCceEEEEECCCC--CEEEEeeCCCCEEEEecC
Confidence 3455679999999975 578889999999999743
No 63
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=22.77 E-value=1.7e+02 Score=27.97 Aligned_cols=71 Identities=17% Similarity=0.157 Sum_probs=46.4
Q ss_pred cchhhhhccc-cceeccccccccCCCCCCCCCceeeEEEecCCCCcceeEEEeecCCCCCceEEEEecCCCCcceeEEEe
Q 001379 98 FSAVAWCGKL-NAIACASETCARIPSSNANTPFWIPIHIVIPERPTECAVFNVIADCPRDSVQFIEWSPTSCPRALLIAN 176 (1090)
Q Consensus 98 Fsavawc~kl-N~iaca~eTCarip~S~~np~fwiPihIviPerPtE~avfnv~adsp~d~vq~ieWSp~~cpRALLiAn 176 (1090)
-.+++|.... |.++.+++.. =|.|...+..+....+ ......+.|..+.|+| ..+-|+.+.
T Consensus 134 v~~~~~~p~~~~~l~s~~~dg--------------~i~iwd~~~~~~~~~~--~~~~~~~~v~~~~~~~--~~~~l~~~~ 195 (402)
T 2aq5_A 134 VGIVAWHPTAQNVLLSAGCDN--------------VILVWDVGTGAAVLTL--GPDVHPDTIYSVDWSR--DGALICTSC 195 (402)
T ss_dssp EEEEEECSSBTTEEEEEETTS--------------CEEEEETTTTEEEEEE--CTTTCCSCEEEEEECT--TSSCEEEEE
T ss_pred EEEEEECcCCCCEEEEEcCCC--------------EEEEEECCCCCccEEE--ecCCCCCceEEEEECC--CCCEEEEEe
Confidence 3456676664 6666665421 1455555554433332 1134567899999999 457888999
Q ss_pred ccceEEEEec
Q 001379 177 FYGRVTIWTQ 186 (1090)
Q Consensus 177 f~GRvtIWtQ 186 (1090)
.+|.|.||.-
T Consensus 196 ~d~~i~iwd~ 205 (402)
T 2aq5_A 196 RDKRVRVIEP 205 (402)
T ss_dssp TTSEEEEEET
T ss_pred cCCcEEEEeC
Confidence 9999999974
No 64
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=22.25 E-value=98 Score=29.09 Aligned_cols=34 Identities=24% Similarity=0.535 Sum_probs=28.5
Q ss_pred CCCceEEEEecCCCCcceeEEEeccceEEEEecCC
Q 001379 154 PRDSVQFIEWSPTSCPRALLIANFYGRVTIWTQPS 188 (1090)
Q Consensus 154 p~d~vq~ieWSp~~cpRALLiAnf~GRvtIWtQPs 188 (1090)
-.+.|..+.|+|.. ++-|+.+..+|.|.||.-.+
T Consensus 72 h~~~v~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~ 105 (383)
T 3ei3_B 72 FDRRVTSLEWHPTH-PTTVAVGSKGGDIILWDYDV 105 (383)
T ss_dssp CSSCEEEEEECSSC-TTEEEEEEBTSCEEEEETTS
T ss_pred CCCCEEEEEECCCC-CCEEEEEcCCCeEEEEeCCC
Confidence 45789999999975 57899999999999997554
No 65
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=21.97 E-value=1e+02 Score=29.00 Aligned_cols=32 Identities=28% Similarity=0.536 Sum_probs=27.2
Q ss_pred CCceEEEEecCCCCcceeEEEeccceEEEEecCC
Q 001379 155 RDSVQFIEWSPTSCPRALLIANFYGRVTIWTQPS 188 (1090)
Q Consensus 155 ~d~vq~ieWSp~~cpRALLiAnf~GRvtIWtQPs 188 (1090)
.+.|..+.|||.. +-|+.+..+|.|.||....
T Consensus 262 ~~~v~~v~~sp~g--~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 262 NDVVWHVSWSITA--NILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp SSCEEEEEECTTT--CCEEEEESSSCEEEEEECT
T ss_pred CCcEEEEEEcCCC--CEEEEEcCCCeEEEEEECC
Confidence 5789999999985 6788899999999997543
No 66
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=21.64 E-value=1.8e+02 Score=27.43 Aligned_cols=34 Identities=15% Similarity=0.102 Sum_probs=28.8
Q ss_pred CCCCceEEEEecCCCCcceeEEEeccceEEEEec
Q 001379 153 CPRDSVQFIEWSPTSCPRALLIANFYGRVTIWTQ 186 (1090)
Q Consensus 153 sp~d~vq~ieWSp~~cpRALLiAnf~GRvtIWtQ 186 (1090)
.-.+.|..+.|+|..-.+.|+.+-.+|.|.||.-
T Consensus 195 ~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~ 228 (330)
T 2hes_X 195 GHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKY 228 (330)
T ss_dssp CCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEE
T ss_pred CCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEe
Confidence 4567899999999876677889999999999964
No 67
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=21.51 E-value=2.3e+02 Score=27.82 Aligned_cols=34 Identities=18% Similarity=0.290 Sum_probs=27.2
Q ss_pred CCCceEEEEecCCCCcceeEEEeccceEEEEecCC
Q 001379 154 PRDSVQFIEWSPTSCPRALLIANFYGRVTIWTQPS 188 (1090)
Q Consensus 154 p~d~vq~ieWSp~~cpRALLiAnf~GRvtIWtQPs 188 (1090)
..+.|..|.|+|.. +..|+.+..+|.|.||.--+
T Consensus 276 ~~~~v~~i~~~p~~-~~~l~tg~~dg~v~vwd~~~ 309 (430)
T 2xyi_A 276 HTAEVNCLSFNPYS-EFILATGSADKTVALWDLRN 309 (430)
T ss_dssp CSSCEEEEEECSSC-TTEEEEEETTSEEEEEETTC
T ss_pred CCCCeEEEEeCCCC-CCEEEEEeCCCeEEEEeCCC
Confidence 44679999999953 55788899999999998543
No 68
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=21.10 E-value=90 Score=30.14 Aligned_cols=59 Identities=15% Similarity=0.127 Sum_probs=37.6
Q ss_pred hheeeeccCCceEEeeeeeCceeeeeCCCCCcccceee---ecccccccCccCcccccccee
Q 001379 560 LARIVYSAHGGEIAIALLRGGVHIFSGPNFAPVDNYQI---SVGSAIAAPAFSSTSCCSASV 618 (1090)
Q Consensus 560 LARiVySAhgGEiavAfl~GgVhiFSG~nftpVdnyqI---nVgsaIa~PaFSsTSCCsASV 618 (1090)
+-.+.||..|.-|+.+.-.|.|+||.-.+-..+..+.- .-...|..-+||+..-..+|.
T Consensus 301 v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sg 362 (380)
T 3iz6_a 301 VTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTG 362 (380)
T ss_dssp CSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEE
T ss_pred eEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEe
Confidence 34567888888888888899999998655554443311 112345566777765555443
No 69
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=20.61 E-value=2.8e+02 Score=26.13 Aligned_cols=31 Identities=23% Similarity=0.672 Sum_probs=26.8
Q ss_pred CCCceEEEEecCCCCcceeEEEeccceEEEEec
Q 001379 154 PRDSVQFIEWSPTSCPRALLIANFYGRVTIWTQ 186 (1090)
Q Consensus 154 p~d~vq~ieWSp~~cpRALLiAnf~GRvtIWtQ 186 (1090)
..+.|..+.|+|.. +-|+.+-.+|.|.||.-
T Consensus 57 h~~~v~~v~~sp~~--~~las~s~D~~v~iw~~ 87 (330)
T 2hes_X 57 HKKAIRSVAWRPHT--SLLAAGSFDSTVSIWAK 87 (330)
T ss_dssp CCSCEEEEEECTTS--SEEEEEETTSCEEEEEC
T ss_pred ccCCEEEEEECCCC--CEEEEEeCCCcEEEEEc
Confidence 67889999999975 67888899999999964
No 70
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=20.50 E-value=1.8e+02 Score=26.36 Aligned_cols=35 Identities=23% Similarity=0.395 Sum_probs=28.8
Q ss_pred CCceEEEEecCCC-CcceeEEEeccceEEEEecCCC
Q 001379 155 RDSVQFIEWSPTS-CPRALLIANFYGRVTIWTQPSH 189 (1090)
Q Consensus 155 ~d~vq~ieWSp~~-cpRALLiAnf~GRvtIWtQPsq 189 (1090)
.+.|..+.|+|.. ..+-|+.+..+|.|.||.-.+.
T Consensus 65 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 100 (357)
T 3i2n_A 65 AKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAP 100 (357)
T ss_dssp SSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSC
T ss_pred cCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCC
Confidence 5789999999975 2577889999999999976543
No 71
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=20.38 E-value=2.1e+02 Score=29.84 Aligned_cols=67 Identities=19% Similarity=0.223 Sum_probs=0.0
Q ss_pred chhhhhccccceeccccccccCCCCCCCCCceeeEEEecCCCCcceeEEEeecCCCCCceEEEEecCCCCcceeEEEecc
Q 001379 99 SAVAWCGKLNAIACASETCARIPSSNANTPFWIPIHIVIPERPTECAVFNVIADCPRDSVQFIEWSPTSCPRALLIANFY 178 (1090)
Q Consensus 99 savawc~klN~iaca~eTCarip~S~~np~fwiPihIviPerPtE~avfnv~adsp~d~vq~ieWSp~~cpRALLiAnf~ 178 (1090)
.+++|...-+.|+++++... |.|...+.-..+..+ ....+.|..+.|+|.. +-|+++..+
T Consensus 59 ~~~~~s~~~~~l~~~~~dg~--------------i~vw~~~~~~~~~~~----~~~~~~v~~~~~s~~~--~~l~~~~~d 118 (814)
T 3mkq_A 59 RAGKFIARKNWIIVGSDDFR--------------IRVFNYNTGEKVVDF----EAHPDYIRSIAVHPTK--PYVLSGSDD 118 (814)
T ss_dssp EEEEEEGGGTEEEEEETTSE--------------EEEEETTTCCEEEEE----ECCSSCEEEEEECSSS--SEEEEEETT
T ss_pred EEEEEeCCCCEEEEEeCCCe--------------EEEEECCCCcEEEEE----ecCCCCEEEEEEeCCC--CEEEEEcCC
Q ss_pred ceEEEEe
Q 001379 179 GRVTIWT 185 (1090)
Q Consensus 179 GRvtIWt 185 (1090)
|.|.||.
T Consensus 119 g~i~vw~ 125 (814)
T 3mkq_A 119 LTVKLWN 125 (814)
T ss_dssp SEEEEEE
T ss_pred CEEEEEE
No 72
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=20.33 E-value=1.3e+02 Score=29.79 Aligned_cols=30 Identities=20% Similarity=0.431 Sum_probs=26.5
Q ss_pred CCCCceEEEEecCCCCcceeEEEeccceEEEEe
Q 001379 153 CPRDSVQFIEWSPTSCPRALLIANFYGRVTIWT 185 (1090)
Q Consensus 153 sp~d~vq~ieWSp~~cpRALLiAnf~GRvtIWt 185 (1090)
...+.|..+.|+|... |+.+..+|.|.||.
T Consensus 582 ~h~~~v~~l~~s~~~~---l~s~~~d~~v~iw~ 611 (615)
T 1pgu_A 582 AHKDGVNNLLWETPST---LVSSGADACIKRWN 611 (615)
T ss_dssp SSTTCEEEEEEEETTE---EEEEETTSCEEEEE
T ss_pred cCccceEEEEEcCCCC---eEEecCCceEEEEe
Confidence 3467899999999875 99999999999996
Done!