BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001380
(1089 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HYX|A Chain A, Structure Of The C-Terminal Domain Of Dipz From
Mycobacterium Tuberculosis
pdb|2HYX|B Chain B, Structure Of The C-Terminal Domain Of Dipz From
Mycobacterium Tuberculosis
pdb|2HYX|C Chain C, Structure Of The C-Terminal Domain Of Dipz From
Mycobacterium Tuberculosis
pdb|2HYX|D Chain D, Structure Of The C-Terminal Domain Of Dipz From
Mycobacterium Tuberculosis
Length = 352
Score = 82.8 bits (203), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 74/174 (42%), Gaps = 4/174 (2%)
Query: 399 EQTEGGSSQSERIQQFVNYISDVENRKTTPIVPEFPAKLDWLNTA---PLQFRRDLKGKV 455
EQ G + + Q N ++ P+ WLNT P+ + L+GKV
Sbjct: 26 EQLNLGGIVNAQNAQLSNCSDGAAQLESCGTAPDLKGITGWLNTPGNKPIDLK-SLRGKV 84
Query: 456 VVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGI 515
V++DFW Y CINC +P + + YKD V+GVH+ ++ EK + GI
Sbjct: 85 VLIDFWAYSCINCQRAIPHVVGWYQAYKDSGLAVIGVHTPEYAFEKVPGNVAKGAANLGI 144
Query: 516 SHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAAL 569
S+P+ D + W WP ++ G + GEG + LV L
Sbjct: 145 SYPIALDNNYATWTNYRNRYWPAEYLIDATGTVRHIKFGEGDYNVTETLVRQLL 198
>pdb|3E58|A Chain A, Crystal Structure Of Putative Beta-Phosphoglucomutase From
Streptococcus Thermophilus
pdb|3E58|B Chain B, Crystal Structure Of Putative Beta-Phosphoglucomutase From
Streptococcus Thermophilus
Length = 214
Score = 69.7 bits (169), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 86/172 (50%), Gaps = 9/172 (5%)
Query: 79 VSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLP---FMGTGEANFLGGVASV 135
V A++FD DGVL ++E+ + G+ + D LP F+G +
Sbjct: 5 VEAIIFDXDGVLFDTEKYYYDRRASFLGQKGISI---DHLPPSFFIGGNTKQVWENILRD 61
Query: 136 KGVKGFDSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKV 195
+ K +D ++ + Y P + FP L+++N+ KS+GL++ +ASS+ + +
Sbjct: 62 EYDK-WDVSTLQEEY-NTYKQNNPLPYKELIFPDVLKVLNEVKSQGLEIGLASSSVKADI 119
Query: 196 DANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIED 247
L L FD ++S + F+ KP P+I+L+A K LNV S ++IED
Sbjct: 120 FRALEENRLQ-GFFDIVLSGEEFKESKPNPEIYLTALKQLNVQASRALIIED 170
>pdb|1TE2|A Chain A, Putative Phosphatase Ynic From Escherichia Coli K12
pdb|1TE2|B Chain B, Putative Phosphatase Ynic From Escherichia Coli K12
Length = 226
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 88/191 (46%), Gaps = 8/191 (4%)
Query: 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLP-FMGTGEANFLGGVASVK 136
++ A +FD DG+L +SE RA +DV A +GV+++ + LP +G + + +
Sbjct: 8 QILAAIFDXDGLLIDSEPLWDRAELDVXASLGVDISRRNELPDTLGLRIDXVVDLWYARQ 67
Query: 137 GVKGFDSEAAKKRFFE--IYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIK 194
G + +R I L + +P PG E + CK +GL V +AS++
Sbjct: 68 PWNGPSRQEVVERVIARAISLVEETRPL----LPGVREAVALCKEQGLLVGLASASPLHX 123
Query: 195 VDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDXXXXXXX 254
++ L L S FDA+ SA+ KP P ++L + L V C+ +ED
Sbjct: 124 LEKVLTXFDLRDS-FDALASAEKLPYSKPHPQVYLDCAAKLGVDPLTCVALEDSVNGXIA 182
Query: 255 XXXXQMRCIAV 265
+ R I V
Sbjct: 183 SKAARXRSIVV 193
>pdb|4G9B|A Chain A, Crystal Structure Of Beta-Phosphoglucomutase Homolog From
Escherichia Coli, Target Efi-501172, With Bound Mg, Open
Lid
Length = 243
Score = 59.7 bits (143), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 87/202 (43%), Gaps = 9/202 (4%)
Query: 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKG 137
K+ V+FD+DGV+ ++ +A + AE+G+ + + G L + G
Sbjct: 4 KLQGVIFDLDGVITDTAHLHFQAWQQIAAEIGISIDAQFNESLKGISRDESLRRILQHGG 63
Query: 138 VKG-FDSEAAKKRFFE---IYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRI 193
+G F+S+ + + +Y+ + PG L+ +++ + V +AS +
Sbjct: 64 KEGDFNSQERAQLAYRKNLLYVHSLRELTVNAVLPGIRSLLADLRAQQISVGLAS----V 119
Query: 194 KVDANLAAAGLPV-SMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDXXXXX 252
++A A L + F A +N KP P+IFL+A L VP CI IED
Sbjct: 120 SLNAPTILAALELREFFTFCADASQLKNSKPDPEIFLAACAGLGVPPQACIGIEDAQAGI 179
Query: 253 XXXXXXQMRCIAVTTTLSEERL 274
MR + + L+ +L
Sbjct: 180 DAINASGMRSVGIGAGLTGAQL 201
>pdb|2L5O|A Chain A, Solution Structure Of A Putative Thioredoxin From
Neisseria Meningitidis
Length = 153
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 4/106 (3%)
Query: 450 DLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNA 509
DL+GKV +++FW C C+ +P + YK+ F V+ V +E++R
Sbjct: 25 DLQGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQPI----DPIESVRQY 80
Query: 510 VLRYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGE 555
V YG+ V+ D D + + G +PT ++G G++L GE
Sbjct: 81 VKDYGLPFTVMYDADKAVGQAFGTQVYPTSVLIGKKGEILKTYVGE 126
>pdb|3QYP|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47asn Mutant Complexed With Calcium
And Phosphate
pdb|3QYP|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47asn Mutant Complexed With Calcium
And Phosphate
pdb|3QUC|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47asn Mutant Complexed With Sulfate
Length = 243
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 88/195 (45%), Gaps = 11/195 (5%)
Query: 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKG 137
K+ AVLFDMDGVL NS A V G++++ E+ +M G G +++
Sbjct: 23 KLKAVLFDMDGVLFNSMPYHSEAWHQVMKTHGLDLSREE--AYMHNGRT----GASTINI 76
Query: 138 V--KGFDSEAAKKRFFEIYLDKYAKPNS---GIGFPGALELINQCKSKGLKVAVASSADR 192
V + EA ++ IY +K NS PGA EL+ + KS+GL V + + +
Sbjct: 77 VFQRELGKEATQEEIESIYHEKSILFNSYPEAERMPGAWELLQKVKSEGLTPMVVTGSGQ 136
Query: 193 IKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDXXXXX 252
+ + L + + +V+A + KP P+ +L A K + E +VIE+
Sbjct: 137 LSLLERLEHNFPGMFHKELMVTAFDVKYGKPNPEPYLMALKKGGLKADEAVVIENAPLGV 196
Query: 253 XXXXXXQMRCIAVTT 267
+ IAV T
Sbjct: 197 EAGHKAGIFTIAVNT 211
>pdb|3QUB|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47ala Mutant Complexed With Sulfate
Length = 243
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 88/195 (45%), Gaps = 11/195 (5%)
Query: 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKG 137
K+ AVLFDMDGVL NS A V G++++ E+ +M G G +++
Sbjct: 23 KLKAVLFDMDGVLFNSMPYHSEAWHQVMKTHGLDLSREE--AYMHAGRT----GASTINI 76
Query: 138 V--KGFDSEAAKKRFFEIYLDKYAKPNS---GIGFPGALELINQCKSKGLKVAVASSADR 192
V + EA ++ IY +K NS PGA EL+ + KS+GL V + + +
Sbjct: 77 VFQRELGKEATQEEIESIYHEKSILFNSYPEAERMPGAWELLQKVKSEGLTPMVVTGSGQ 136
Query: 193 IKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDXXXXX 252
+ + L + + +V+A + KP P+ +L A K + E +VIE+
Sbjct: 137 LSLLERLEHNFPGMFHKELMVTAFDVKYGKPNPEPYLMALKKGGLKADEAVVIENAPLGV 196
Query: 253 XXXXXXQMRCIAVTT 267
+ IAV T
Sbjct: 197 EAGHKAGIFTIAVNT 211
>pdb|3QUQ|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, An Open Cap Conformation
pdb|3QU2|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, A Closed Cap Conformation
pdb|3QU2|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, A Closed Cap Conformation
pdb|3QU2|C Chain C, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, A Closed Cap Conformation
pdb|3QU2|D Chain D, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, A Closed Cap Conformation
pdb|3QX7|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron Complexed With Phosphate, A Closed Cap
Conformation
pdb|3QXG|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron Complexed With Calcium, A Closed Cap
Conformation
pdb|3QXG|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron Complexed With Calcium, A Closed Cap
Conformation
Length = 243
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 88/195 (45%), Gaps = 11/195 (5%)
Query: 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKG 137
K+ AVLFDMDGVL NS A V G++++ E+ +M G G +++
Sbjct: 23 KLKAVLFDMDGVLFNSMPYHSEAWHQVMKTHGLDLSREE--AYMHEGRT----GASTINI 76
Query: 138 V--KGFDSEAAKKRFFEIYLDKYAKPNS---GIGFPGALELINQCKSKGLKVAVASSADR 192
V + EA ++ IY +K NS PGA EL+ + KS+GL V + + +
Sbjct: 77 VFQRELGKEATQEEIESIYHEKSILFNSYPEAERMPGAWELLQKVKSEGLTPMVVTGSGQ 136
Query: 193 IKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDXXXXX 252
+ + L + + +V+A + KP P+ +L A K + E +VIE+
Sbjct: 137 LSLLERLEHNFPGMFHKELMVTAFDVKYGKPNPEPYLMALKKGGLKADEAVVIENAPLGV 196
Query: 253 XXXXXXQMRCIAVTT 267
+ IAV T
Sbjct: 197 EAGHKAGIFTIAVNT 211
>pdb|3S6J|A Chain A, The Crystal Structure Of A Hydrolase From Pseudomonas
Syringae
pdb|3S6J|B Chain B, The Crystal Structure Of A Hydrolase From Pseudomonas
Syringae
pdb|3S6J|C Chain C, The Crystal Structure Of A Hydrolase From Pseudomonas
Syringae
pdb|3S6J|D Chain D, The Crystal Structure Of A Hydrolase From Pseudomonas
Syringae
pdb|3S6J|E Chain E, The Crystal Structure Of A Hydrolase From Pseudomonas
Syringae
pdb|3S6J|F Chain F, The Crystal Structure Of A Hydrolase From Pseudomonas
Syringae
Length = 233
Score = 57.4 bits (137), Expect = 5e-08, Method: Composition-based stats.
Identities = 46/169 (27%), Positives = 77/169 (45%), Gaps = 4/169 (2%)
Query: 80 SAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVK 139
++ +FD+DG L +S + A + + + +G L ++ G
Sbjct: 7 TSFIFDLDGTLTDSVYQNVAAWKEALDAENIPLAXWRIHRKIGXSGGLXLKSLSRETGXS 66
Query: 140 GFDSEAAKKRFFEIYLDKYAK-PNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDAN 198
D +A +R E + Y + + I PGA+EL+ + LK +A+S N
Sbjct: 67 ITDEQA--ERLSEKHAQAYERLQHQIIALPGAVELLETLDKENLKWCIATSGGIDTATIN 124
Query: 199 LAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIED 247
L A L ++ + IV+ D KP PD+FL+A+K + P EC+VI D
Sbjct: 125 LKALKLDINKIN-IVTRDDVSYGKPDPDLFLAAAKKIGAPIDECLVIGD 172
>pdb|3R9K|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47asp Mutant Complexed With
Sulfate, A Closed Cap Conformation
Length = 243
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 88/195 (45%), Gaps = 11/195 (5%)
Query: 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKG 137
K+ AVLFDMDGVL NS A V G++++ E+ +M G G +++
Sbjct: 23 KLKAVLFDMDGVLFNSMPYHSEAWHQVMKTHGLDLSREE--AYMHDGRT----GASTINI 76
Query: 138 V--KGFDSEAAKKRFFEIYLDKYAKPNS---GIGFPGALELINQCKSKGLKVAVASSADR 192
V + EA ++ IY +K NS PGA EL+ + KS+GL V + + +
Sbjct: 77 VFQRELGKEATQEEIESIYHEKSILFNSYPEAERMPGAWELLQKVKSEGLTPMVVTGSGQ 136
Query: 193 IKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDXXXXX 252
+ + L + + +V+A + KP P+ +L A K + E +VIE+
Sbjct: 137 LSLLERLEHNFPGMFHKELMVTAFDVKYGKPNPEPYLMALKKGGLKADEAVVIENAPLGV 196
Query: 253 XXXXXXQMRCIAVTT 267
+ IAV T
Sbjct: 197 EAGHKAGIFTIAVNT 211
>pdb|1O03|A Chain A, Structure Of Pentavalent Phosphorous Intermediate Of An
Enzyme Catalyzed Phosphoryl Transfer Reaction Observed
On Cocrystallization With Glucose 6-Phosphate
pdb|1O08|A Chain A, Structure Of Pentavalent Phosphorous Intermediate Of An
Enzyme Catalyzed Phosphoryl Transfer Reaction Observed
On Cocrystallization With Glucose 1-Phosphate
pdb|1Z4N|A Chain A, Structure Of Beta-phosphoglucomutase With Inhibitor Bound
Alpha-galactose 1-phosphate Cocrystallized With Fluoride
pdb|1Z4N|B Chain B, Structure Of Beta-phosphoglucomutase With Inhibitor Bound
Alpha-galactose 1-phosphate Cocrystallized With Fluoride
pdb|1Z4O|A Chain A, Structure Of Beta-Phosphoglucomutase With Inhibitor Bound
Alpha-Galactose 1-Phosphate
pdb|1Z4O|B Chain B, Structure Of Beta-Phosphoglucomutase With Inhibitor Bound
Alpha-Galactose 1-Phosphate
pdb|1ZOL|A Chain A, Native Beta-Pgm
pdb|2WF5|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phospahte And Trifluoromagnesate
pdb|2WHE|A Chain A, Structure Of Native Beta-Phosphoglucomutase In An Open
Conformation Without Bound Ligands.
pdb|2WF7|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phosphonate And Aluminium Tetrafluoride
pdb|2WF6|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phospahte And Aluminium Tetrafluoride
pdb|2WF8|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phosphate, Glucose-1-Phosphate And Beryllium
Trifluoride
pdb|2WF9|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phosphate, And Beryllium Trifluoride, Crystal
Form 2
pdb|2WFA|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Beryllium Trifluoride, In An Open Conformation
Length = 221
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 79/170 (46%), Gaps = 6/170 (3%)
Query: 81 AVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDF-LPFMGTGEANFLGGVASV--KG 137
AVLFD+DGV+ ++ E RA + E+G+ F G + L + + K
Sbjct: 4 AVLFDLDGVITDTAEYHFRAWKALAEEIGINGVDRQFNEQLKGVSREDSLQKILDLADKK 63
Query: 138 VKGFDSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDA 197
V + + KR + Y+ + +PG L+L+ +S +K+A+AS++ K
Sbjct: 64 VSAEEFKELAKRKNDNYVKMIQDVSPADVYPGILQLLKDLRSNKIKIALASAS---KNGP 120
Query: 198 NLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIED 247
L FDAI KPAPDIF++A+ + V SE I +ED
Sbjct: 121 FLLERMNLTGYFDAIADPAEVAASKPAPDIFIAAAHAVGVAPSESIGLED 170
>pdb|3QU5|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp11asn Mutant
pdb|3QU5|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp11asn Mutant
Length = 243
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 88/195 (45%), Gaps = 11/195 (5%)
Query: 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKG 137
K+ AVLF+MDGVL NS A V G++++ E+ +M G G +++
Sbjct: 23 KLKAVLFNMDGVLFNSMPYHSEAWHQVMKTHGLDLSREE--AYMHEGRT----GASTINI 76
Query: 138 V--KGFDSEAAKKRFFEIYLDKYAKPNS---GIGFPGALELINQCKSKGLKVAVASSADR 192
V + EA ++ IY +K NS PGA EL+ + KS+GL V + + +
Sbjct: 77 VFQRELGKEATQEEIESIYHEKSILFNSYPEAERMPGAWELLQKVKSEGLTPMVVTGSGQ 136
Query: 193 IKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDXXXXX 252
+ + L + + +V+A + KP P+ +L A K + E +VIE+
Sbjct: 137 LSLLERLEHNFPGMFHKELMVTAFDVKYGKPNPEPYLMALKKGGLKADEAVVIENAPLGV 196
Query: 253 XXXXXXQMRCIAVTT 267
+ IAV T
Sbjct: 197 EAGHKAGIFTIAVNT 211
>pdb|3QUT|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13asn Mutant, An Open Cap
Conformation
pdb|3QU7|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13asn Mutant Complexed With Calcium
And Phosphate
pdb|3QU7|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13asn Mutant Complexed With Calcium
And Phosphate
pdb|3QU9|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13asn Mutant Complexed With
Magnesium And Tartrate
Length = 243
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 88/195 (45%), Gaps = 11/195 (5%)
Query: 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKG 137
K+ AVLFDM+GVL NS A V G++++ E+ +M G G +++
Sbjct: 23 KLKAVLFDMNGVLFNSMPYHSEAWHQVMKTHGLDLSREE--AYMHEGRT----GASTINI 76
Query: 138 V--KGFDSEAAKKRFFEIYLDKYAKPNS---GIGFPGALELINQCKSKGLKVAVASSADR 192
V + EA ++ IY +K NS PGA EL+ + KS+GL V + + +
Sbjct: 77 VFQRELGKEATQEEIESIYHEKSILFNSYPEAERMPGAWELLQKVKSEGLTPMVVTGSGQ 136
Query: 193 IKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDXXXXX 252
+ + L + + +V+A + KP P+ +L A K + E +VIE+
Sbjct: 137 LSLLERLEHNFPGMFHKELMVTAFDVKYGKPNPEPYLMALKKGGLKADEAVVIENAPLGV 196
Query: 253 XXXXXXQMRCIAVTT 267
+ IAV T
Sbjct: 197 EAGHKAGIFTIAVNT 211
>pdb|4EX6|A Chain A, Crystal Structure Of The Alnumycin P Phosphatase Alnb
pdb|4EX7|A Chain A, Crystal Structure Of The Alnumycin P Phosphatase In
Complex With Free Phosphate
Length = 237
Score = 55.1 bits (131), Expect = 2e-07, Method: Composition-based stats.
Identities = 50/192 (26%), Positives = 83/192 (43%), Gaps = 6/192 (3%)
Query: 81 AVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVKG 140
V+ D+DG L ++ +V A MG V+ L +G L G+ V
Sbjct: 21 GVILDLDGTLADTPAAIATITAEVLAAMGTAVSRGAILSTVGRPLPASLAGLLGVPVEDP 80
Query: 141 FDSEAAKK--RFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDAN 198
+EA ++ R F ++ + A P + +PG LE +++ + G ++A+A+S A
Sbjct: 81 RVAEATEEYGRRFGAHV-RAAGPR--LLYPGVLEGLDRLSAAGFRLAMATSKVEKAARAI 137
Query: 199 LAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDXXXXXXXXXXX 258
GL + I D+ E KP PD+ L ++ L +P C+VI D
Sbjct: 138 AELTGLDTRL-TVIAGDDSVERGKPHPDMALHVARGLGIPPERCVVIGDGVPDAEMGRAA 196
Query: 259 QMRCIAVTTTLS 270
M I V+ +S
Sbjct: 197 GMTVIGVSYGVS 208
>pdb|3FM9|A Chain A, Analysis Of The Structural Determinants Underlying
Discrimination Between Substrate And Solvent In Beta-
Phosphoglucomutase Catalysis
Length = 221
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 78/170 (45%), Gaps = 6/170 (3%)
Query: 81 AVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDF-LPFMGTGEANFLGGVASV--KG 137
AVLFD+DGV+ + E RA + E+G+ F G + L + + K
Sbjct: 4 AVLFDLDGVITDPAEYHFRAWKALAEEIGINGVDRQFNEQLKGVSREDSLQKILDLADKK 63
Query: 138 VKGFDSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDA 197
V + + KR + Y+ + +PG L+L+ +S +K+A+AS++ K
Sbjct: 64 VSAEEFKELAKRKNDNYVKMIQDVSPADVYPGILQLLKDLRSNKIKIALASAS---KNGP 120
Query: 198 NLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIED 247
L FDAI KPAPDIF++A+ + V SE I +ED
Sbjct: 121 FLLERMNLTGYFDAIADPAEVAASKPAPDIFIAAAHAVGVAPSESIGLED 170
>pdb|4EEK|A Chain A, Crystal Structure Of Had Family Hydrolase Dr_1622 From
Deinococcus Radiodurans R1 (Target Efi-501256) With
Bound Phosphate And Sodium
pdb|4EEL|A Chain A, Crystal Structure Of Had Family Hydrolase Dr_1622 From
Deinococcus Radiodurans R1 (Target Efi-501256) With
Bound Citrate And Sodium
pdb|4EEN|A Chain A, Crystal Structure Of Had Family Hydrolase Dr_1622 From
Deinococcus Radiodurans R1 (Target Efi-501256) With
Bound Magnesium
Length = 259
Score = 54.3 bits (129), Expect = 4e-07, Method: Composition-based stats.
Identities = 46/169 (27%), Positives = 79/169 (46%), Gaps = 7/169 (4%)
Query: 81 AVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVKG 140
AVLFD+DGVL SE + V AE G+ + + + + TG+ F G +A +
Sbjct: 30 AVLFDLDGVLVESEGIIAQVWQSVLAERGLHLDLTEIAMYF-TGQ-RFDGVLAYLAQQHD 87
Query: 141 FDSEAAKKRFFEIYLDKYAKPNSGI-GFPGALELINQCKSKGLKVAVASSADRIKVDANL 199
F F ++ ++ +G+ GA E + ++ G+ A+ S+++R ++ L
Sbjct: 88 F---VPPPDFLDVLETRFNAAMTGVTAIEGAAETLRALRAAGVPFAIGSNSERGRLHLKL 144
Query: 200 AAAGLPVSMFDAIVSADAFENL-KPAPDIFLSASKILNVPTSECIVIED 247
AGL + I KP PD++ A++ L + C+VIED
Sbjct: 145 RVAGLTELAGEHIYDPSWVGGRGKPHPDLYTFAAQQLGILPERCVVIED 193
>pdb|3QU4|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|C Chain C, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|D Chain D, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|E Chain E, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|F Chain F, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|G Chain G, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|H Chain H, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
Length = 243
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 87/195 (44%), Gaps = 11/195 (5%)
Query: 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKG 137
K+ AVLFDM GVL NS A V G++++ E+ +M G G +++
Sbjct: 23 KLKAVLFDMAGVLFNSMPYHSEAWHQVMKTHGLDLSREE--AYMHEGRT----GASTINI 76
Query: 138 V--KGFDSEAAKKRFFEIYLDKYAKPNS---GIGFPGALELINQCKSKGLKVAVASSADR 192
V + EA ++ IY +K NS PGA EL+ + KS+GL V + + +
Sbjct: 77 VFQRELGKEATQEEIESIYHEKSILFNSYPEAERMPGAWELLQKVKSEGLTPMVVTGSGQ 136
Query: 193 IKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDXXXXX 252
+ + L + + +V+A + KP P+ +L A K + E +VIE+
Sbjct: 137 LSLLERLEHNFPGMFHKELMVTAFDVKYGKPNPEPYLMALKKGGLKADEAVVIENAPLGV 196
Query: 253 XXXXXXQMRCIAVTT 267
+ IAV T
Sbjct: 197 EAGHKAGIFTIAVNT 211
>pdb|4GIB|A Chain A, 2.27 Angstrom Crystal Structure Of Beta-Phosphoglucomutase
(Pgmb) From Clostridium Difficile
pdb|4GIB|B Chain B, 2.27 Angstrom Crystal Structure Of Beta-Phosphoglucomutase
(Pgmb) From Clostridium Difficile
Length = 250
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 86/205 (41%), Gaps = 12/205 (5%)
Query: 79 VSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGV 138
+ A +FD+DGV+ ++ A + ++G+++ + G L +
Sbjct: 26 IEAFIFDLDGVITDTAYYHYMAWRKLAHKVGIDIDTKFNESLKGISRMESLDRILEFGNK 85
Query: 139 KGFDSEAAKKRFFE----IYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVAS-SADRI 193
K SE K R E Y+ + S PG L+ KS +K+ ++S S + I
Sbjct: 86 KYSFSEEEKVRMAEEKNNYYVSLIDEITSNDILPGIESLLIDVKSNNIKIGLSSASKNAI 145
Query: 194 KVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDXXXXXX 253
V +L + FD I A +N KP P+IFL ++K LNV CI IED
Sbjct: 146 NVLNHLGIS----DKFDFIADAGKCKNNKPHPEIFLMSAKGLNVNPQNCIGIEDASAGID 201
Query: 254 XXXXXQMRCIAVTTTLSEERLKEAS 278
M + V E LK+A+
Sbjct: 202 AINSANMFSVGVGNY---ENLKKAN 223
>pdb|1LVH|A Chain A, The Structure Of Phosphorylated Beta-phosphoglucomutase
From Lactoccocus Lactis To 2.3 Angstrom Resolution
pdb|1LVH|B Chain B, The Structure Of Phosphorylated Beta-phosphoglucomutase
From Lactoccocus Lactis To 2.3 Angstrom Resolution
Length = 221
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 78/170 (45%), Gaps = 6/170 (3%)
Query: 81 AVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDF-LPFMGTGEANFLGGVASV--KG 137
AVLF +DGV+ ++ E RA + E+G+ F G + L + + K
Sbjct: 4 AVLFXLDGVITDTAEYHFRAWKALAEEIGINGVDRQFNEQLKGVSREDSLQKILDLADKK 63
Query: 138 VKGFDSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDA 197
V + + KR + Y+ + +PG L+L+ +S +K+A+AS++ K
Sbjct: 64 VSAEEFKELAKRKNDNYVKMIQDVSPADVYPGILQLLKDLRSNKIKIALASAS---KNGP 120
Query: 198 NLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIED 247
L FDAI KPAPDIF++A+ + V SE I +ED
Sbjct: 121 FLLERMNLTGYFDAIADPAEVAASKPAPDIFIAAAHAVGVAPSESIGLED 170
>pdb|3C71|A Chain A, Struture Of A Resa Variant With A Dsba-Like Active Site
Motif (Cphc)
Length = 143
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 5/105 (4%)
Query: 450 DLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNA 509
DLKGK V L+FW C +C P ++ +YK F GV + + A+ N
Sbjct: 23 DLKGKGVFLNFWGTWCPHCKKEFP---YMANQYKH--FKSQGVEIVAVNVGESKIAVHNF 77
Query: 510 VLRYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAG 554
+ YG++ PVV D D + V+ PT ++ P GK++ + G
Sbjct: 78 MKSYGVNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVVKVVTG 122
>pdb|3C73|A Chain A, Structure Of Cehc Variant Resa
pdb|3C73|B Chain B, Structure Of Cehc Variant Resa
Length = 140
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 5/105 (4%)
Query: 450 DLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNA 509
DLKGK V L+FW C +C P + K +K +V V+ E + A+ N
Sbjct: 20 DLKGKGVFLNFWGTWCEHCKKEFPYMANQYKHFKSQGVEIVAVNVG----ESKI-AVHNF 74
Query: 510 VLRYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAG 554
+ YG++ PVV D D + V+ PT ++ P GK++ + G
Sbjct: 75 MKSYGVNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVVKVVTG 119
>pdb|2H1B|A Chain A, Resa E80q
pdb|2H1B|B Chain B, Resa E80q
pdb|2H1B|C Chain C, Resa E80q
pdb|2H1B|D Chain D, Resa E80q
Length = 143
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 5/105 (4%)
Query: 450 DLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNA 509
DLKGK V L+FW C C P ++ +YK F GV + + A+ N
Sbjct: 23 DLKGKGVFLNFWGTWCEPCKKQFP---YMANQYKH--FKSQGVEIVAVNVGESKIAVHNF 77
Query: 510 VLRYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAG 554
+ YG++ PVV D D + V+ PT ++ P GK++ + G
Sbjct: 78 MKSYGVNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVVKVVTG 122
>pdb|3NAS|A Chain A, The Crystal Structure Of Beta-Phosphoglucomutase From
Bacillus Subtilis
pdb|3NAS|B Chain B, The Crystal Structure Of Beta-Phosphoglucomutase From
Bacillus Subtilis
Length = 233
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 76/174 (43%), Gaps = 9/174 (5%)
Query: 79 VSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGV 138
+ AV+FD+DGV+ ++ E A + ++ + + G L + G
Sbjct: 2 LKAVIFDLDGVITDTAEYHFLAWKHIAEQIDIPFDRDXNERLKGISREESLESILIFGGA 61
Query: 139 KGFDSEAAKKRFFEIYLDKYAKPNSGIG----FPGALELINQCKSKGLKVAVASSADRI- 193
+ + A K+ Y S + PG L+ Q K++ +K+ +ASS+
Sbjct: 62 ETKYTNAEKQELXHRKNRDYQXLISKLTPEDLLPGIGRLLCQLKNENIKIGLASSSRNAP 121
Query: 194 KVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIED 247
K+ LA + F AIV KP PDIFL+A+ L+V ++C IED
Sbjct: 122 KILRRLAI----IDDFHAIVDPTTLAKGKPDPDIFLTAAAXLDVSPADCAAIED 171
>pdb|1ST9|A Chain A, Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|1ST9|B Chain B, Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|1SU9|A Chain A, Reduced Structure Of The Soluble Domain Of Resa
pdb|1SU9|B Chain B, Reduced Structure Of The Soluble Domain Of Resa
pdb|2H1D|A Chain A, Resa Ph 9.25
pdb|2H1D|B Chain B, Resa Ph 9.25
Length = 143
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 5/105 (4%)
Query: 450 DLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNA 509
DLKGK V L+FW C C P ++ +YK F GV + + A+ N
Sbjct: 23 DLKGKGVFLNFWGTWCEPCKKEFP---YMANQYKH--FKSQGVEIVAVNVGESKIAVHNF 77
Query: 510 VLRYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAG 554
+ YG++ PVV D D + V+ PT ++ P GK++ + G
Sbjct: 78 MKSYGVNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVVKVVTG 122
>pdb|2B5X|A Chain A, Solution Structure Of A Thioredoxin-Like Protein In The
Reduced Form
pdb|2B5Y|A Chain A, Solution Structure Of A Thioredoxin-Like Protein In The
Oxidized Form
Length = 148
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 57/141 (40%), Gaps = 4/141 (2%)
Query: 430 VPEFPAKLDWLNTAPLQFRRDLKG-KVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFT 488
+PE + WLN R L G K ++ FW+ C C +P + KY+D
Sbjct: 7 MPELTGEKAWLNGEVT--REQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQ-LN 63
Query: 489 VVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKL 548
VV VH + +++ D I+ + I+ P+ D D L P + V G+L
Sbjct: 64 VVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDHALTDAFENEYVPAYYVFDKTGQL 123
Query: 549 LAQLAGEGHRKDLDDLVEAAL 569
AG K L+ V L
Sbjct: 124 RHFQAGGSGMKMLEKRVNRVL 144
>pdb|3OR5|A Chain A, Crystal Structure Of Thiol:disulfide Interchange Protein,
Thioredoxin Family Protein From Chlorobium Tepidum Tls
Length = 165
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 57/124 (45%), Gaps = 10/124 (8%)
Query: 451 LKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAV 510
LKGK +++F+ C C +PD ++K + FT VG+ NE+ L ++N
Sbjct: 32 LKGKAYIVNFFATWCPPCRSEIPDXVQVQKTWASRGFTFVGIAV----NEQ-LPNVKNYX 86
Query: 511 LRYGISHPVVNDGD-----MNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLV 565
GI +PV N + + G+ PT V+ +G + + G + D D +V
Sbjct: 87 KTQGIIYPVXXATPELIRAFNGYIDGGITGIPTSFVIDASGNVSGVIVGPRSKADFDRIV 146
Query: 566 EAAL 569
+ AL
Sbjct: 147 KXAL 150
>pdb|2NYV|A Chain A, X-Ray Crystal Structure Of A Phosphoglycolate Phosphatase
From Aquifex Aeolicus
Length = 222
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 77/185 (41%), Gaps = 39/185 (21%)
Query: 79 VSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGV 138
+ +LFD+DG L +S + A E+G+E D + ++GG GV
Sbjct: 3 LRVILFDLDGTLIDSAKDIALALEKTLKELGLEEYYPDNV-------TKYIGG-----GV 50
Query: 139 KGFDSEAAKKRFFEIYLDK-----------YAKPNSGIGFPGALELINQCKSKGLKVAVA 187
+ + K +F E Y++ Y KP I P LE KSKG K+AV
Sbjct: 51 RALLEKVLKDKFREEYVEVFRKHYLENPVVYTKPYPEI--PYTLE---ALKSKGFKLAVV 105
Query: 188 SS-----ADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSEC 242
S+ + +I NL+ FD IV D F KP+P L +IL +
Sbjct: 106 SNKLEELSKKILDILNLSG------YFDLIVGGDTFGEKKPSPTPVLKTLEILGEEPEKA 159
Query: 243 IVIED 247
+++ D
Sbjct: 160 LIVGD 164
>pdb|3DV9|A Chain A, Putative Beta-Phosphoglucomutase From Bacteroides Vulgatus
Length = 247
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 85/197 (43%), Gaps = 17/197 (8%)
Query: 79 VSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGV 138
+ AVLFD DGVL +S + + G ++ E+ G A+ + V+ +
Sbjct: 23 LKAVLFDXDGVLFDSXPNHAESWHKIXKRFGFGLSREEAYXHEGRTGASTINIVSRRE-- 80
Query: 139 KGFD-SEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSA------D 191
+G D +E K ++ +++ K PGALE++ + KS+GL V + + D
Sbjct: 81 RGHDATEEEIKAIYQAKTEEFNKCPKAERXPGALEVLTKIKSEGLTPXVVTGSGQTSLLD 140
Query: 192 RIKVD-ANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDXXX 250
R+ + + A L V+ FD KP P+ +L A K +E +VIE+
Sbjct: 141 RLNHNFPGIFQANLXVTAFDVKYG-------KPNPEPYLXALKKGGFKPNEALVIENAPL 193
Query: 251 XXXXXXXXQMRCIAVTT 267
+ IAV T
Sbjct: 194 GVQAGVAAGIFTIAVNT 210
>pdb|2H19|A Chain A, Crystal Structure Of Resa Cys77ala Variant
pdb|2H19|B Chain B, Crystal Structure Of Resa Cys77ala Variant
Length = 143
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 5/105 (4%)
Query: 450 DLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNA 509
DLKGK V L+FW C P ++ +YK F GV + + A+ N
Sbjct: 23 DLKGKGVFLNFWGTWCEPAKKEFP---YMANQYKH--FKSQGVEIVAVNVGESKIAVHNF 77
Query: 510 VLRYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAG 554
+ YG++ PVV D D + V+ PT ++ P GK++ + G
Sbjct: 78 MKSYGVNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVVKVVTG 122
>pdb|2H1A|A Chain A, Resa C74a Variant
pdb|2H1A|B Chain B, Resa C74a Variant
Length = 143
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 5/105 (4%)
Query: 450 DLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNA 509
DLKGK V L+FW C P ++ +YK F GV + + A+ N
Sbjct: 23 DLKGKGVFLNFWGTWAEPCKKEFP---YMANQYKH--FKSQGVEIVAVNVGESKIAVHNF 77
Query: 510 VLRYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAG 554
+ YG++ PVV D D + V+ PT ++ P GK++ + G
Sbjct: 78 MKSYGVNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVVKVVTG 122
>pdb|2YY6|A Chain A, Crystal Structure Of The Phosphoglycolate Phosphatase From
Aquifex Aeolicus Vf5
pdb|2YY6|B Chain B, Crystal Structure Of The Phosphoglycolate Phosphatase From
Aquifex Aeolicus Vf5
Length = 213
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 76/183 (41%), Gaps = 39/183 (21%)
Query: 81 AVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVKG 140
+LFD+DG L +S + A E+G+E D + ++GG GV+
Sbjct: 3 VILFDLDGTLIDSAKDIALALEKTLKELGLEEYYPDNV-------TKYIGG-----GVRA 50
Query: 141 FDSEAAKKRFFEIYLDK-----------YAKPNSGIGFPGALELINQCKSKGLKVAVASS 189
+ K +F E Y++ Y KP I P LE KSKG K+AV S+
Sbjct: 51 LLEKVLKDKFREEYVEVFRKHYLENPVVYTKPYPEI--PYTLE---ALKSKGFKLAVVSN 105
Query: 190 -----ADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIV 244
+ +I NL+ FD IV D F KP+P L +IL + ++
Sbjct: 106 KLEELSKKILDILNLSG------YFDLIVGGDTFGEKKPSPTPVLKTLEILGEEPEKALI 159
Query: 245 IED 247
+ D
Sbjct: 160 VGD 162
>pdb|3KBB|A Chain A, Crystal Structure Of Putative Beta-Phosphoglucomutase From
Thermotoga Maritima
Length = 216
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 74/172 (43%), Gaps = 12/172 (6%)
Query: 80 SAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVK 139
AV+FD DGVL ++E A V G T + G E L + +K
Sbjct: 2 EAVIFDXDGVLXDTEPLYFEAYRRVAESYGKPYTEDLHRRIXGVPEREGLPILXEALEIK 61
Query: 140 GFDS-EAAKKRFFE---IYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKV 195
DS E KKR E + K N PG E + KSK +K+A+A+S + +
Sbjct: 62 --DSLENFKKRVHEEKKRVFSELLKEN-----PGVREALEFVKSKRIKLALATSTPQREA 114
Query: 196 DANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIED 247
L L FD V D +N KP P+I+L + LNV + +V ED
Sbjct: 115 LERLRRLDLE-KYFDVXVFGDQVKNGKPDPEIYLLVLERLNVVPEKVVVFED 165
>pdb|2HI0|A Chain A, Crystal Structure Of Putative Phosphoglycolate Phosphatase
(Yp_619066.1) From Lactobacillus Delbrueckii Subsp.
Bulgaricus Atcc Baa-365 At 1.51 A Resolution
pdb|2HI0|B Chain B, Crystal Structure Of Putative Phosphoglycolate Phosphatase
(Yp_619066.1) From Lactobacillus Delbrueckii Subsp.
Bulgaricus Atcc Baa-365 At 1.51 A Resolution
Length = 240
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 81/191 (42%), Gaps = 24/191 (12%)
Query: 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGV--EVTVEDFLPFMGTG------EANFL 129
K A +FD DG + ++ A F + G + TVED F G+G A
Sbjct: 3 KYKAAIFDXDGTILDTSADLTSALNYAFEQTGHRHDFTVEDIKNFFGSGVVVAVTRALAY 62
Query: 130 GGVASVKGVKGFDS------EAAKK----RFFEIYLDKYA---KPNSGIGFPGALELINQ 176
+S + + F + EA + R E++ YA + +G FPG L+L
Sbjct: 63 EAGSSRESLVAFGTKDEQIPEAVTQTEVNRVLEVFKPYYADHCQIKTG-PFPGILDLXKN 121
Query: 177 CKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILN 236
+ KG+K+AV S+ V L P S FD + + KPAPD K+L
Sbjct: 122 LRQKGVKLAVVSNKPNEAVQV-LVEELFPGS-FDFALGEKSGIRRKPAPDXTSECVKVLG 179
Query: 237 VPTSECIVIED 247
VP +C+ I D
Sbjct: 180 VPRDKCVYIGD 190
>pdb|1L0Q|A Chain A, Tandem Yvtn Beta-Propeller And Pkd Domains From An
Archaeal Surface Layer Protein
pdb|1L0Q|B Chain B, Tandem Yvtn Beta-Propeller And Pkd Domains From An
Archaeal Surface Layer Protein
pdb|1L0Q|C Chain C, Tandem Yvtn Beta-Propeller And Pkd Domains From An
Archaeal Surface Layer Protein
pdb|1L0Q|D Chain D, Tandem Yvtn Beta-Propeller And Pkd Domains From An
Archaeal Surface Layer Protein
Length = 391
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 67/345 (19%), Positives = 145/345 (42%), Gaps = 82/345 (23%)
Query: 614 RLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYV 673
++++++++ N + + D N ++ +G PQG+A + +YV
Sbjct: 45 KVYVANAHSNDVSIIDTATNNVIATVPAGSS--------------PQGVAVSPDGKQVYV 90
Query: 674 ADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIA 733
+ + L ID ++TV GT + SP + P +K+Y+
Sbjct: 91 TNXASSTLSVIDTTSNTVA-----------------GTVKTGKSPLGLALSPDGKKLYVT 133
Query: 734 MAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFA--QPSGISLSPDFMEIYVAD 791
G + S ++ VT+A +NT P GI+++PD ++YVA+
Sbjct: 134 NNGDKTV---SVINTVTKAV--------------INTVSVGRSPKGIAVTPDGTKVYVAN 176
Query: 792 SESSSIRALNLKT-------------GGSRLLAGGDPIFPDNLFKFGDR----DGMGSEV 834
+S SI ++ T G + G + N+ K+ + D +++
Sbjct: 177 FDSXSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSXIDTGTNKI 236
Query: 835 LLQHPL-----GVYCAKNG-QIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDG---A 885
+ P+ G+ +G ++YVA S+ + + +D A+N ++ +GK + G
Sbjct: 237 TARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATXAVGKNPYASGQFIG 296
Query: 886 ALAAQLSEPAGIIEAQ--NGNLFIADTNNNIIRYLDLNKEEPELQ 928
++ Q P+ ++ +G +F+++ +++ DL+K+ E +
Sbjct: 297 SIPVQPVYPSADFKSNITSGYIFLSEP----VQFTDLSKDATEWK 337
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 27/110 (24%)
Query: 773 AQPSGISLSPDFMEIYVADSESSSIRALNLKTGG--SRLLAGGDPIFPDNLFKFGDRDGM 830
+ P G +SPD ++YVA++ S+ + ++ T + + AG
Sbjct: 32 SNPXGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAG------------------ 73
Query: 831 GSEVLLQHPLGVYCAKNG-QIYVADSYNHKIKKLDPASNRVSTLAGIGKA 879
P GV + +G Q+YV + + + +D SN V+ GK+
Sbjct: 74 ------SSPQGVAVSPDGKQVYVTNXASSTLSVIDTTSNTVAGTVKTGKS 117
>pdb|3HRP|A Chain A, Crystal Structure Of Structural Genomics Protein Of
Unknown Function (np_812590.1) From Bacteroides
Thetaiotaomicron Vpi-5482 At 1.70 A Resolution
Length = 409
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 53/114 (46%), Gaps = 2/114 (1%)
Query: 610 ILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKN 669
+++ + SD N + + DG GS+ ++ ++DG ++A F +P G + N
Sbjct: 276 FVDSNFYXSDQNLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGXTVDEDGN 335
Query: 670 LLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCY 723
V + + LR++D ++ V T+AG S G N P+D+CY
Sbjct: 336 FYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTP--LEATFNYPYDICY 387
>pdb|4EVM|A Chain A, 1.5 Angstrom Crystal Structure Of Soluble Domain Of
Membrane-Anchored Thioredoxin Family Protein From
Streptococcus Pneumoniae Strain Canada Mdr_19a
Length = 138
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 49/108 (45%), Gaps = 6/108 (5%)
Query: 450 DLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNA 509
D KGK V L FW C C+ LPD + + K+ D + V+ V S E+ +N
Sbjct: 19 DYKGKKVYLKFWASWCSICLASLPDTDEIAKEAGD-DYVVLTVVSPGHKGEQSEADFKN- 76
Query: 510 VLRYGISH---PVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAG 554
G+ + PV+ D L GV S+PT A + GKL+ G
Sbjct: 77 -WYKGLDYKNLPVLVDPSGKLLETYGVRSYPTQAFIDKEGKLVKTHPG 123
>pdb|2H1G|A Chain A, Resa C74aC77A
pdb|2H1G|B Chain B, Resa C74aC77A
Length = 143
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 5/105 (4%)
Query: 450 DLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNA 509
DLKGK V L+FW P ++ +YK F GV + + A+ N
Sbjct: 23 DLKGKGVFLNFWGTWAEPAKKEFP---YMANQYKH--FKSQGVEIVAVNVGESKIAVHNF 77
Query: 510 VLRYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAG 554
+ YG++ PVV D D + V+ PT ++ P GK++ + G
Sbjct: 78 MKSYGVNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVVKVVTG 122
>pdb|3L5K|A Chain A, The Crystal Structure Of Human Haloacid Dehalogenase-Like
Hydrolase Domain Containing 1a (Hdhd1a)
Length = 250
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 87/200 (43%), Gaps = 26/200 (13%)
Query: 79 VSAVLFDMDGVLCNSEEPSRRAAVDVFAEM------GVEVTVEDFLPFMGTGE---ANFL 129
V+ ++FDMDG+L ++E R VF E+ V+ + MG A +
Sbjct: 30 VTHLIFDMDGLLLDTE----RLYSVVFQEICNRYDKKYSWDVKSLV--MGKKALEAAQII 83
Query: 130 GGVASVKGVKGFDSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASS 189
V + K E ++ + E++ P + + PGA +LI + G+ A+A+S
Sbjct: 84 IDVLQLPMSKEELVEESQTKLKEVF------PTAAL-MPGAEKLIIHLRKHGIPFALATS 136
Query: 190 ADRIKVDANLAAAGLPVSMFDAIVSAD--AFENLKPAPDIFLSASKILNVPTS--ECIVI 245
+ D + S+F IV D ++ KP PDIFL+ +K + P + +C+V
Sbjct: 137 SRSASFDMKTSRHKEFFSLFSHIVLGDDPEVQHGKPDPDIFLACAKRFSPPPAMEKCLVF 196
Query: 246 EDXXXXXXXXXXXQMRCIAV 265
ED M+ + V
Sbjct: 197 EDAPNGVEAALAAGMQVVMV 216
>pdb|2FDR|A Chain A, Crystal Structure Of Conserved Haloacid Dehalogenase-like
Protein Of Unknown Function Atu0790 From Agrobacterium
Tumefaciens Str. C58
Length = 229
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 75/189 (39%), Gaps = 12/189 (6%)
Query: 82 VLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDF-LPFMGTGEANFLGGVASVKGVKG 140
++FD DGVL +SE + + + E G ++VE+ F G N L V S +
Sbjct: 7 IIFDCDGVLVDSEIIAAQVESRLLTEAGYPISVEEXGERFAGXTWKNILLQVESEASIPL 66
Query: 141 FDSEAAK-KRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANL 199
S K ++ + L++ K G+ F + +C + S++ ++D L
Sbjct: 67 SASLLDKSEKLLDXRLERDVKIIDGVKFALSRLTTPRC--------ICSNSSSHRLDXXL 118
Query: 200 AAAGLPVSMFDAIVSADAF--ENLKPAPDIFLSASKILNVPTSECIVIEDXXXXXXXXXX 257
GL I SA + +KP PDIFL + V +V+ED
Sbjct: 119 TKVGLKPYFAPHIYSAKDLGADRVKPKPDIFLHGAAQFGVSPDRVVVVEDSVHGIHGARA 178
Query: 258 XQMRCIAVT 266
R I T
Sbjct: 179 AGXRVIGFT 187
>pdb|3KCM|A Chain A, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|B Chain B, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|C Chain C, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|D Chain D, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|E Chain E, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|F Chain F, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
Length = 154
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 4/105 (3%)
Query: 450 DLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNA 509
DLKG+VV+++FW C C +P L PF + V +E A+
Sbjct: 25 DLKGQVVIVNFWATWCPPCREEIPSXXRLNAAXAGKPFRXLCVSI----DEGGKVAVEEF 80
Query: 510 VLRYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAG 554
+ G + PV+ D D + + G P V+ +G +L ++ G
Sbjct: 81 FRKTGFTLPVLLDADKRVGKLYGTTGVPETFVIDRHGVILKKVVG 125
>pdb|2F9S|A Chain A, 2nd Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|2F9S|B Chain B, 2nd Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
Length = 151
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 42/95 (44%), Gaps = 5/95 (5%)
Query: 450 DLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNA 509
DLKGK V L+FW C C P K +K +V V+ E + A+ N
Sbjct: 23 DLKGKGVFLNFWGTWCEPCKKEFPYXANQYKHFKSQGVEIVAVNVG----ESKI-AVHNF 77
Query: 510 VLRYGISHPVVNDGDMNLWRELGVNSWPTFAVVGP 544
YG++ PVV D D + V+ PT ++ P
Sbjct: 78 XKSYGVNFPVVLDTDRQVLDAYDVSPLPTTFLINP 112
>pdb|1JFU|A Chain A, Crystal Structure Of The Soluble Domain Of Tlpa From
Bradyrhizobium Japonicum
pdb|1JFU|B Chain B, Crystal Structure Of The Soluble Domain Of Tlpa From
Bradyrhizobium Japonicum
Length = 186
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 53/120 (44%), Gaps = 9/120 (7%)
Query: 450 DLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNA 509
D +GK ++++ W C+ C +P L+ L+ K F VV ++ D EK ++ A
Sbjct: 57 DFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEA 116
Query: 510 VL-RYGISHPVVNDGDMNLWRELGVN----SWPTFAVVGPNGKLLAQLAGEGHRKDLDDL 564
L R G ND ++++L PT +V P G +A +AG D L
Sbjct: 117 NLTRLG----YFNDQKAKVFQDLKAIGRALGMPTSVLVDPQGCEIATIAGPAEWASEDAL 172
>pdb|3GL3|A Chain A, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|B Chain B, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|C Chain C, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|D Chain D, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
Length = 152
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 50/126 (39%), Gaps = 15/126 (11%)
Query: 450 DLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNA 509
D G VV LDFW C C P + KYK F VV V+ L+A
Sbjct: 25 DKTGSVVYLDFWASWCGPCRQSFPWXNQXQAKYKAKGFQVVAVN---------LDAKTGD 75
Query: 510 VLRYGISHP----VVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAG--EGHRKDLDD 563
++ P V D R GV PT ++ NGK+L Q G ++ L+
Sbjct: 76 AXKFLAQVPAEFTVAFDPKGQTPRLYGVKGXPTSFLIDRNGKVLLQHVGFRPADKEALEQ 135
Query: 564 LVEAAL 569
+ AAL
Sbjct: 136 QILAAL 141
>pdb|2GFH|A Chain A, Crystal Structure Of A N-acetylneuraminic Acid Phosphatase
(nanp) From Mus Musculus At 1.90 A Resolution
Length = 260
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 80/191 (41%), Gaps = 27/191 (14%)
Query: 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFA-----------------EMGVEVTVEDFLPF 120
+V AV FD+D L ++ SRR ++V ++ V+++ E F P+
Sbjct: 17 RVRAVFFDLDNTLIDTAGASRRGMLEVIKLLQSKYHYKEEAEIICDKVQVKLSKECFHPY 76
Query: 121 ----MGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQ 176
+++ + KG G D+ + + +L K + I ++ +
Sbjct: 77 STCITDVRTSHWEEAIQETKG--GADNRKLAEECY--FLWKSTRLQHMILADDVKAMLTE 132
Query: 177 CKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILN 236
+ K +++ + ++ DR + A S FDAIV + KPAP IF +L
Sbjct: 133 LR-KEVRLLLLTNGDRQTQREKIEACACQ-SYFDAIVIGGEQKEEKPAPSIFYHCCDLLG 190
Query: 237 VPTSECIVIED 247
V +C+++ D
Sbjct: 191 VQPGDCVMVGD 201
>pdb|3TC9|A Chain A, Crystal Structure Of A Hypothetical Hydrolase (Bt_3476)
From Bacteroides Thetaiotaomicron Vpi-5482 At 2.23 A
Resolution
pdb|3TC9|B Chain B, Crystal Structure Of A Hypothetical Hydrolase (Bt_3476)
From Bacteroides Thetaiotaomicron Vpi-5482 At 2.23 A
Resolution
Length = 430
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 639 GSSGEEGLRDGSF-DDATFNRPQGLAYNAKKNLLYVADTENHALREIDF 686
GS+G G DG +A FN P+G+ Y+ ++ ++ D EN +R+I +
Sbjct: 380 GSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY 428
>pdb|4HW6|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacova_00264)
From Bacteroides Ovatus Atcc 8483 At 1.70 A Resolution
pdb|4HW6|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacova_00264)
From Bacteroides Ovatus Atcc 8483 At 1.70 A Resolution
pdb|4HW6|C Chain C, Crystal Structure Of A Hypothetical Protein (Bacova_00264)
From Bacteroides Ovatus Atcc 8483 At 1.70 A Resolution
pdb|4HW6|D Chain D, Crystal Structure Of A Hypothetical Protein (Bacova_00264)
From Bacteroides Ovatus Atcc 8483 At 1.70 A Resolution
Length = 433
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 639 GSSGEEGLRDGSF-DDATFNRPQGLAYNAKKNLLYVADTENHALREI 684
G+S E G DG A FN P +AY+ K+ Y+ D +NH +R+I
Sbjct: 383 GNSREWGYVDGELRSQALFNHPTSIAYDXKRKCFYIGDCDNHRVRKI 429
>pdb|3CMI|A Chain A, Crystal Structure Of Glutathione-Dependent Phospholipid
Peroxidase Hyr1 From The Yeast Saccharomyces Cerevisiae
Length = 171
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 7/87 (8%)
Query: 444 PLQFRRDLKGKVV-VLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEK- 501
P F + LKGKVV +++ + C + +LE L K+YKD FT++G +F +++
Sbjct: 24 PFPFDQ-LKGKVVLIVNVASKCGFTPQY--KELEALYKRYKDEGFTIIGFPCNQFGHQEP 80
Query: 502 --DLEAIRNAVLRYGISHPVVNDGDMN 526
D E + L YG++ P++ D+N
Sbjct: 81 GSDEEIAQFCQLNYGVTFPIMKKIDVN 107
>pdb|1Q7F|A Chain A, Brain Tumor Nhl Domain
pdb|1Q7F|B Chain B, Brain Tumor Nhl Domain
Length = 286
Score = 41.2 bits (95), Expect = 0.004, Method: Composition-based stats.
Identities = 62/275 (22%), Positives = 100/275 (36%), Gaps = 69/275 (25%)
Query: 642 GEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKG 701
GE G+ +G F + P G+A NA+ +++ VADT NH ++ D +G
Sbjct: 20 GEFGVMEGQFTE-----PSGVAVNAQNDII-VADTNNHRIQIFD-------------KEG 60
Query: 702 S-DYQGGEKGT--SQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGY 758
+Q GE G SQLL + + + + HQI ++ R F
Sbjct: 61 RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQFVRKFGA--- 117
Query: 759 ERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFP 818
T P G+++ I V E +R + G
Sbjct: 118 -----------TILQHPRGVTVDNKGRIIVV---ECKVMRVIIFDQNG------------ 151
Query: 819 DNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGK 878
+ L KF G L+ P GV +I+++D+ H +K + + + G G
Sbjct: 152 NVLHKF------GCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGI 205
Query: 879 AGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNN 913
+ P G+ NG + IAD +NN
Sbjct: 206 TNY------------PIGVGINSNGEILIADNHNN 228
Score = 32.3 bits (72), Expect = 1.4, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 881 FKDGAALAAQLSEPAGI-IEAQNGNLFIADTNNNIIRYLD 919
F + + Q +EP+G+ + AQN ++ +ADTNN+ I+ D
Sbjct: 19 FGEFGVMEGQFTEPSGVAVNAQN-DIIVADTNNHRIQIFD 57
Score = 30.4 bits (67), Expect = 5.1, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 603 PGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGE 643
P +A++ N+ + ++D+N++RI + D +G F Q G G+
Sbjct: 32 PSGVAVNAQND-IIVADTNNHRIQIFDKEGRFKFQFGECGK 71
Score = 30.4 bits (67), Expect = 5.3, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 14/80 (17%)
Query: 600 LKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRP 659
L+FP + ++ +FISD+ + + V + +G ++ QIG G N P
Sbjct: 163 LEFPNGVVVND-KQEIFISDNRAHCVKVFNYEGQYLRQIGGEG------------ITNYP 209
Query: 660 QGLAYNAKKNLLYVADTENH 679
G+ N+ +L +AD N+
Sbjct: 210 IGVGINSNGEIL-IADNHNN 228
Score = 30.4 bits (67), Expect = 5.5, Method: Composition-based stats.
Identities = 19/99 (19%), Positives = 43/99 (43%), Gaps = 14/99 (14%)
Query: 600 LKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRP 659
L+ P + +D R+ + + R+++ D +GN + + G S P
Sbjct: 120 LQHPRGVTVDN-KGRIIVVECKVMRVIIFDQNGNVLHKFGCSKH------------LEFP 166
Query: 660 QGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNG 698
G+ N K+ ++++D H ++ ++ +R + G G
Sbjct: 167 NGVVVNDKQE-IFISDNRAHCVKVFNYEGQYLRQIGGEG 204
>pdb|1RWI|B Chain B, Extracellular Domain Of Mycobacterium Tuberculosis Pknd
pdb|1RWI|A Chain A, Extracellular Domain Of Mycobacterium Tuberculosis Pknd
pdb|1RWL|A Chain A, Extracellular Domain Of Mycobacterium Tuberculosis Pknd
Length = 270
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 13/84 (15%)
Query: 836 LQHPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPA 895
L +P G+ G +YVAD N+++ KL S + L G L++P
Sbjct: 107 LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTG-------------LNDPD 153
Query: 896 GIIEAQNGNLFIADTNNNIIRYLD 919
G+ +GN+++ DT+NN + L+
Sbjct: 154 GVAVDNSGNVYVTDTDNNRVVKLE 177
Score = 34.3 bits (77), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 13/83 (15%)
Query: 836 LQHPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPA 895
L P GV +G +YV D+ N+++ KL+ SN L F D ++ P
Sbjct: 149 LNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLP------FTD-------ITAPW 195
Query: 896 GIIEAQNGNLFIADTNNNIIRYL 918
GI + G +++ + N N + L
Sbjct: 196 GIAVDEAGTVYVTEHNTNQVVKL 218
>pdb|2LJA|A Chain A, Solution Structure Of A Putative Thiol-Disulfide
Oxidoreductase From Bacteroides Vulgatus
Length = 152
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 10/104 (9%)
Query: 450 DLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKY--KDMPFTVVGVHSAKFDNEKDLEAIR 507
DLKGK + +D W C C LP L+ LE+KY KD +H +K+ +A
Sbjct: 27 DLKGKYIYIDVWATWCGPCRGELPALKELEEKYAGKD-------IHFVSLSCDKNKKAWE 79
Query: 508 NAVLRYGISHPVVNDG-DMNLWRELGVNSWPTFAVVGPNGKLLA 550
N V + + ++ G D +N P F ++ +GK+++
Sbjct: 80 NMVTKDQLKGIQLHMGTDRTFMDAYLINGIPRFILLDRDGKIIS 123
>pdb|2LRN|A Chain A, Solution Structure Of A Thiol:disulfide Interchange
Protein From Bacteroides Sp.
pdb|4GRF|A Chain A, Crystal Structure Of Thioredoxin Domain Of Thiol-Disulfide
Oxidoreductase Bvu-2223 (Target Efi-501010) From
Bacteroides Vulgatus
Length = 152
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 52/120 (43%), Gaps = 3/120 (2%)
Query: 450 DLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNA 509
D KGK V++DFW C C P L +KD FT+ GV + + E+D +
Sbjct: 26 DFKGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKGFTIYGVSTDR--REEDWKKAIEE 83
Query: 510 VLRYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLA-QLAGEGHRKDLDDLVEAA 568
Y + D ++ + +P +V P GK++A +L G+ ++ V A
Sbjct: 84 DKSYWNQVLLQKDDVKDVLESYCIVGFPHIILVDPEGKIVAKELRGDDLYNTVEKFVNGA 143
>pdb|3D6J|A Chain A, Crystal Structure Of Putative Haloacid Dehalogenase-Like
Hydrolase From Bacteroides Fragilis
Length = 225
Score = 40.4 bits (93), Expect = 0.006, Method: Composition-based stats.
Identities = 47/206 (22%), Positives = 78/206 (37%), Gaps = 12/206 (5%)
Query: 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLP--FMGTGEANF--LGGVA 133
K + LFD D L +S V G +D + T E +F L G+
Sbjct: 5 KYTVYLFDFDYTLADSSRGIVTCFRSVLERHGYTGITDDXIKRTIGKTLEESFSILTGIT 64
Query: 134 SVKGVKGFDSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRI 193
++ F E +K+ D Y N+ I FP L + K +G+++ + S+ R
Sbjct: 65 DADQLESFRQEYSKEA------DIYXNANT-ILFPDTLPTLTHLKKQGIRIGIISTKYRF 117
Query: 194 KVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDXXXXXX 253
++ + L P FD I+ + + KP P+ L A L E + I D
Sbjct: 118 RILSFLRNH-XPDDWFDIIIGGEDVTHHKPDPEGLLLAIDRLKACPEEVLYIGDSTVDAG 176
Query: 254 XXXXXQMRCIAVTTTLSEERLKEASP 279
+ VT+ + + +A P
Sbjct: 177 TAAAAGVSFTGVTSGXTTAQEFQAYP 202
>pdb|3LOR|A Chain A, The Crystal Structure Of A Thiol-Disulfide Isomerase From
Corynebacterium Glutamicum To 2.2a
pdb|3LOR|B Chain B, The Crystal Structure Of A Thiol-Disulfide Isomerase From
Corynebacterium Glutamicum To 2.2a
pdb|3LOR|C Chain C, The Crystal Structure Of A Thiol-Disulfide Isomerase From
Corynebacterium Glutamicum To 2.2a
pdb|3LOR|D Chain D, The Crystal Structure Of A Thiol-Disulfide Isomerase From
Corynebacterium Glutamicum To 2.2a
Length = 160
Score = 40.0 bits (92), Expect = 0.007, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 438 DWLNTAPLQFRRDLKGKVVVLDFWTYCCINCM-HVLPDLEFLEKKYKDMPFTVVGVHSA- 495
+W+N L DL+GKVVV++ + C C+ H +P + + + + V+G+HS
Sbjct: 16 EWVNHEGLS-NEDLRGKVVVVEVFQXLCPGCVNHGVPQAQKIHRXIDESQVQVIGLHSVF 74
Query: 496 KFDNEKDLEAIRNAVLRYGISHPVVND 522
+ + EA++ + +GI PV D
Sbjct: 75 EHHDVXTPEALKVFIDEFGIKFPVAVD 101
>pdb|3V65|B Chain B, Crystal Structure Of Agrin And Lrp4 Complex
pdb|3V65|D Chain D, Crystal Structure Of Agrin And Lrp4 Complex
Length = 386
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 48/79 (60%), Gaps = 7/79 (8%)
Query: 561 LDDLVEA-ALLFYGKKKLLDNTPLPL------SLEKDNDPRLFTSPLKFPGKLAIDILNN 613
L++L A AL F+ +++L+ + + L +L N + ++ L+ PG LA+D +++
Sbjct: 112 LNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHD 171
Query: 614 RLFISDSNHNRIVVTDLDG 632
+L+ +DS +RI V +LDG
Sbjct: 172 KLYWTDSGTSRIEVANLDG 190
>pdb|3S94|A Chain A, Crystal Structure Of Lrp6-E1e2
pdb|3S94|B Chain B, Crystal Structure Of Lrp6-E1e2
Length = 619
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 61/158 (38%), Gaps = 29/158 (18%)
Query: 654 ATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQ 713
A P G+A + LY DT + E+ +N T+R + S+
Sbjct: 389 AQIAHPDGIAVDWVARNLYWTDTGTDRI-EVTRLNGTMRKIL---------------ISE 432
Query: 714 LLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFA 773
L P + P+ +Y G+ E + +DG R +NTS
Sbjct: 433 DLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVL-------------VNTSLG 479
Query: 774 QPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLA 811
P+G++L D +IY D+++ I +N G R+L
Sbjct: 480 WPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLV 517
Score = 33.5 bits (75), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 595 LFTSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNF 634
+ S L P LA D L +L+ +DS NRI V++LDG+
Sbjct: 78 VVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL 117
>pdb|4DG6|A Chain A, Crystal Structure Of Domains 1 And 2 Of Lrp6
Length = 616
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 61/158 (38%), Gaps = 29/158 (18%)
Query: 654 ATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQ 713
A P G+A + LY DT + E+ +N T+R + S+
Sbjct: 381 AQIAHPDGIAVDWVARNLYWTDTGTDRI-EVTRLNGTMRKIL---------------ISE 424
Query: 714 LLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFA 773
L P + P+ +Y G+ E + +DG R +NTS
Sbjct: 425 DLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVL-------------VNTSLG 471
Query: 774 QPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLA 811
P+G++L D +IY D+++ I +N G R+L
Sbjct: 472 WPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLV 509
Score = 33.5 bits (75), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 595 LFTSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNF 634
+ S L P LA D L +L+ +DS NRI V++LDG+
Sbjct: 70 VVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL 109
>pdb|2NO5|A Chain A, Crystal Structure Analysis Of A Dehalogenase With
Intermediate Complex
pdb|2NO5|B Chain B, Crystal Structure Analysis Of A Dehalogenase With
Intermediate Complex
Length = 240
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 166 GFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAP 225
+P A E + + KS G VA+ S+ + + A L A+ L + D+ +SAD + KP P
Sbjct: 106 AYPDAAETLEKLKSAGYIVAILSNGNDEMLQAALKASKLD-RVLDSCLSADDLKIYKPDP 164
Query: 226 DIFLSASKILNV-PTSECIV 244
I+ A L V P C V
Sbjct: 165 RIYQFACDRLGVNPNEVCFV 184
>pdb|2NO4|A Chain A, Crystal Structure Analysis Of A Dehalogenase
pdb|2NO4|B Chain B, Crystal Structure Analysis Of A Dehalogenase
Length = 240
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 166 GFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAP 225
+P A E + + KS G VA+ S+ + + A L A+ L + D+ +SAD + KP P
Sbjct: 106 AYPDAAETLEKLKSAGYIVAILSNGNDEMLQAALKASKLD-RVLDSCLSADDLKIYKPDP 164
Query: 226 DIFLSASKILNV-PTSECIV 244
I+ A L V P C V
Sbjct: 165 RIYQFACDRLGVNPNEVCFV 184
>pdb|3V64|C Chain C, Crystal Structure Of Agrin And Lrp4
pdb|3V64|D Chain D, Crystal Structure Of Agrin And Lrp4
Length = 349
Score = 38.1 bits (87), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 48/79 (60%), Gaps = 7/79 (8%)
Query: 561 LDDLVEA-ALLFYGKKKLLDNTPLPL------SLEKDNDPRLFTSPLKFPGKLAIDILNN 613
L++L A AL F+ +++L+ + + L +L N + ++ L+ PG LA+D +++
Sbjct: 69 LNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHD 128
Query: 614 RLFISDSNHNRIVVTDLDG 632
+L+ +DS +RI V +LDG
Sbjct: 129 KLYWTDSGTSRIEVANLDG 147
>pdb|2W4M|A Chain A, The Crystal Structure Of Human N-Acetylneuraminic Acid
Phosphatase, Nanp
Length = 270
Score = 37.7 bits (86), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 41/193 (21%), Positives = 78/193 (40%), Gaps = 31/193 (16%)
Query: 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFA-----------------EMGVEVTVEDFLPF 120
+V AV FD+D L ++ SRR ++V ++ V+++ E F P+
Sbjct: 27 RVRAVFFDLDNTLIDTAGASRRGMLEVIKLLQSKYHYKEEAEIICDKVQVKLSKECFHPY 86
Query: 121 ----MGTGEANFLGGVASVKGVKGFDSEAAKKRFFE--IYLDKYAKPNSGIGFPGALELI 174
+++ + KG AA ++ E +L K + ++
Sbjct: 87 NTCITDLRTSHWEEAIQETKG------GAANRKLAEECYFLWKSTRLQHMTLAEDVKAML 140
Query: 175 NQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKI 234
+ + K +++ + ++ DR + A S FDA+V KPAP IF +
Sbjct: 141 TELR-KEVRLLLLTNGDRQTQREKIEACACQ-SYFDAVVVGGEQREEKPAPSIFYYCCNL 198
Query: 235 LNVPTSECIVIED 247
L V +C+++ D
Sbjct: 199 LGVQPGDCVMVGD 211
>pdb|3KZX|A Chain A, Crystal Structure Of A Had-Superfamily Hydrolase From
Ehrlichia Chaffeensis At 1.9a Resolution
Length = 231
Score = 37.7 bits (86), Expect = 0.034, Method: Composition-based stats.
Identities = 25/99 (25%), Positives = 52/99 (52%), Gaps = 2/99 (2%)
Query: 150 FFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMF 209
+E L+K K ++ + GA+EL++ K + +A+ S+ + ++ + + L F
Sbjct: 88 LYENSLEKSQKSDNFMLNDGAIELLDTLKENNITMAIVSNKNGERLRSEIHHKNL-THYF 146
Query: 210 DAIVSADAFENLKPAPDIFLSASKILNV-PTSECIVIED 247
D+I+ + +KP+P+ L+A +N+ P+ E I D
Sbjct: 147 DSIIGSGDTGTIKPSPEPVLAALTNINIEPSKEVFFIGD 185
>pdb|3ERW|A Chain A, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|B Chain B, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|C Chain C, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|D Chain D, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|E Chain E, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|F Chain F, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|G Chain G, Crystal Structure Of Stoa From Bacillus Subtilis
Length = 145
Score = 37.4 bits (85), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 49/116 (42%), Gaps = 4/116 (3%)
Query: 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDN-EKDLEAIRNAV 510
KG+ +L FWT C C LP + Y P V + + N E++ + + + +
Sbjct: 33 KGQKTILHFWTSWCPPCKKELPQFQSF---YDAHPSDSVKLVTVNLVNSEQNQQVVEDFI 89
Query: 511 LRYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVE 566
++ P+V D L +E + + PT ++ G++ G + L + E
Sbjct: 90 KANKLTFPIVLDSKGELXKEYHIITIPTSFLLNEKGEIEKTKIGPXTAEQLKEWTE 145
>pdb|3MC1|A Chain A, Crystal Structure Of A Predicted Phosphatase From
Clostridium Acetobutylicum
pdb|3MC1|B Chain B, Crystal Structure Of A Predicted Phosphatase From
Clostridium Acetobutylicum
Length = 226
Score = 37.0 bits (84), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 79/210 (37%), Gaps = 22/210 (10%)
Query: 82 VLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGG--VASVKGVK 139
VLFD+DG L +S E ++ ++ ++ VED + F+G S
Sbjct: 7 VLFDLDGTLTDSAEGITKSVK--YSLNKFDIQVEDL-----SSLNKFVGPPLKTSFXEYY 59
Query: 140 GFDSEAAKKRFFEIYLDKYAKPNSGIG------FPGALELINQCKSKGLKVAVASSADRI 193
FD E A + +D Y G + G L++ K G + VA+S +
Sbjct: 60 NFDEETAT-----VAIDYYRDYFKAKGXFENKVYDGIEALLSSLKDYGFHLVVATSKPTV 114
Query: 194 KVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDXXXXXX 253
L L FDAIV + L D+ A + LN+ + + I I D
Sbjct: 115 FSKQILEHFKLAF-YFDAIVGSSLDGKLSTKEDVIRYAXESLNIKSDDAIXIGDREYDVI 173
Query: 254 XXXXXQMRCIAVTTTL-SEERLKEASPSLI 282
+ I VT S E LK A + I
Sbjct: 174 GALKNNLPSIGVTYGFGSYEELKNAGANYI 203
>pdb|3UMB|A Chain A, Crystal Structure Of The L-2-Haloacid Dehalogenase Rsc1362
Length = 233
Score = 37.0 bits (84), Expect = 0.055, Method: Composition-based stats.
Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 166 GFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAP 225
FP + ++ Q + GL + + S+ + ++ + +AG +FD ++S DA K AP
Sbjct: 100 AFPENVPVLRQLREXGLPLGILSNGNPQXLEIAVKSAGXS-GLFDHVLSVDAVRLYKTAP 158
Query: 226 DIFLSASKILNVPTSECIVI 245
+ A + VP ++ + +
Sbjct: 159 AAYALAPRAFGVPAAQILFV 178
>pdb|3UMC|A Chain A, Crystal Structure Of The L-2-Haloacid Dehalogenase Pa0810
pdb|3UMC|B Chain B, Crystal Structure Of The L-2-Haloacid Dehalogenase Pa0810
pdb|3UMC|C Chain C, Crystal Structure Of The L-2-Haloacid Dehalogenase Pa0810
pdb|3UMC|D Chain D, Crystal Structure Of The L-2-Haloacid Dehalogenase Pa0810
Length = 254
Score = 37.0 bits (84), Expect = 0.058, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 3/40 (7%)
Query: 202 AGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSE 241
AGLP +D ++ AD F + KP P ++L A ++L++P E
Sbjct: 156 AGLP---WDXLLCADLFGHYKPDPQVYLGACRLLDLPPQE 192
>pdb|2QLT|A Chain A, Crystal Structure Of An Isoform Of
Dl-Glycerol-3-Phosphatase, Rhr2p, From Saccharomyces
Cerevisiae
Length = 275
Score = 37.0 bits (84), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 60/251 (23%), Positives = 98/251 (39%), Gaps = 41/251 (16%)
Query: 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKG 137
K++A LFD+DG + S+ A + + G +D F + G +
Sbjct: 34 KINAALFDVDGTIIISQP----AIAAFWRDFG-----KDKPYFDAEHVIHISHGWRTYDA 84
Query: 138 VKGF-----DSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKS-KGLKVAVASSAD 191
+ F D E K EI +KY + I PGA++L N + K AVA+S
Sbjct: 85 IAKFAPDFADEEYVNKLEGEI-PEKYGE--HSIEVPGAVKLCNALNALPKEKWAVATSGT 141
Query: 192 RIKVDANLAAAG---LPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSE------- 241
R ++A L + + ++A+ + KP P+ +L L P +E
Sbjct: 142 R-----DMAKKWFDILKIKRPEYFITANDVKQGKPHPEPYLKGRNGLGFPINEQDPSKSK 196
Query: 242 CIVIEDXXXXXXXXXXXQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDILTGGGGS 301
+V ED + + + TT + LKE +I K S+ + G
Sbjct: 197 VVVFEDAPAGIAAGKAAGCKIVGIATTFDLDFLKEKGCDIIVKNHESIRV--------GE 248
Query: 302 YNEKIQEHELL 312
YN + E EL+
Sbjct: 249 YNAETDEVELI 259
>pdb|1QQ5|A Chain A, Structure Of L-2-Haloacid Dehalogenase From Xanthobacter
Autotrophicus
pdb|1QQ5|B Chain B, Structure Of L-2-Haloacid Dehalogenase From Xanthobacter
Autotrophicus
Length = 253
Score = 37.0 bits (84), Expect = 0.062, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 182 LKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSE 241
LK A+ S+ + A +A AGL S FDA++S DA KP PD + ++L V +E
Sbjct: 108 LKRAILSNGAPDMLQALVANAGLTDS-FDAVISVDAKRVFKPHPDSYALVEEVLGVTPAE 166
Query: 242 CIVI 245
+ +
Sbjct: 167 VLFV 170
>pdb|1QQ7|A Chain A, Structure Of L-2-Haloacid Dehalogenase From Xanthobacter
Autotrophicus With Chloropropionic Acid Covalently Bound
pdb|1QQ7|B Chain B, Structure Of L-2-Haloacid Dehalogenase From Xanthobacter
Autotrophicus With Chloropropionic Acid Covalently Bound
pdb|1QQ6|A Chain A, Structure Of L-2-Haloacid Dehalogenase From Xanthobacter
Autotrophicus With Chloroacetic Acid Covalently Bound
pdb|1QQ6|B Chain B, Structure Of L-2-Haloacid Dehalogenase From Xanthobacter
Autotrophicus With Chloroacetic Acid Covalently Bound
Length = 253
Score = 37.0 bits (84), Expect = 0.062, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 182 LKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSE 241
LK A+ S+ + A +A AGL S FDA++S DA KP PD + ++L V +E
Sbjct: 108 LKRAILSNGAPDMLQALVANAGLTDS-FDAVISVDAKRVFKPHPDSYALVEEVLGVTPAE 166
Query: 242 CIVI 245
+ +
Sbjct: 167 VLFV 170
>pdb|1AQ6|A Chain A, Structure Of L-2-Haloacid Dehalogenase From Xanthobacter
Autotrophicus
pdb|1AQ6|B Chain B, Structure Of L-2-Haloacid Dehalogenase From Xanthobacter
Autotrophicus
Length = 253
Score = 37.0 bits (84), Expect = 0.062, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 182 LKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSE 241
LK A+ S+ + A +A AGL S FDA++S DA KP PD + ++L V +E
Sbjct: 108 LKRAILSNGAPDMLQALVANAGLTDS-FDAVISVDAKRVFKPHPDSYALVEEVLGVTPAE 166
Query: 242 CIVI 245
+ +
Sbjct: 167 VLFV 170
>pdb|3NDA|A Chain A, Crystal Structure Of Serpin From Tick Ixodes Ricinus
pdb|3NDA|B Chain B, Crystal Structure Of Serpin From Tick Ixodes Ricinus
Length = 377
Score = 36.6 bits (83), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 404 GSSQSERIQQFVNYISDVENRKTTPIVPEFPAKLDWLNTAPLQ 446
G Q+ I +F NY+SD+ RK T ++P+F + + APLQ
Sbjct: 246 GLKQNLTIDRFQNYLSDLRERKITVLLPKFKLETKYSLKAPLQ 288
>pdb|3HHV|A Chain A, The Crystal Structure Of The Thioredoxin A2 From
Sulfolobus Solfataricus
Length = 110
Score = 36.6 bits (83), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 30/111 (27%)
Query: 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVL 511
K K+VV+DFW C C+ + P +E L Y + F K + E+ ++ +
Sbjct: 22 KNKIVVVDFWAEWCAPCLILAPVIEELANDYPQVAF-------GKLNTEES----QDIAM 70
Query: 512 RYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLD 562
RYGI S PT NG+L+ Q+ G R++++
Sbjct: 71 RYGIM------------------SLPTIMFFK-NGELVDQILGAVPREEIE 102
>pdb|4A0P|A Chain A, Crystal Structure Of Lrp6p3e3p4e4
Length = 628
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 44/100 (44%), Gaps = 17/100 (17%)
Query: 595 LFTSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDG-NFIVQIGSSGEEGLRDGSFDD 653
LF S L P LA+D +LF +DS+ RI +DL G N IV +D
Sbjct: 471 LFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRIV--------------LED 516
Query: 654 ATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRT 693
+ +P GL +N LY D + + +ID RT
Sbjct: 517 SNILQPVGLT--VFENWLYWIDKQQQMIEKIDMTGREGRT 554
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 600 LKFPGKLAIDILNNRLFISDSNHNRIVVTDLDG 632
L +P +A+D L L+ +D+ NRI V+ LDG
Sbjct: 79 LDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDG 111
>pdb|3S8V|A Chain A, Crystal Structure Of Lrp6-Dkk1 Complex
pdb|3S8V|B Chain B, Crystal Structure Of Lrp6-Dkk1 Complex
pdb|3S8Z|A Chain A, Crystal Structure Of Lrp6-E3e4
Length = 623
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 44/100 (44%), Gaps = 17/100 (17%)
Query: 595 LFTSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDG-NFIVQIGSSGEEGLRDGSFDD 653
LF S L P LA+D +LF +DS+ RI +DL G N IV +D
Sbjct: 476 LFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRIV--------------LED 521
Query: 654 ATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRT 693
+ +P GL +N LY D + + +ID RT
Sbjct: 522 SNILQPVGLT--VFENWLYWIDKQQQMIEKIDMTGREGRT 559
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 600 LKFPGKLAIDILNNRLFISDSNHNRIVVTDLDG 632
L +P +A+D L L+ +D+ NRI V+ LDG
Sbjct: 84 LDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDG 116
>pdb|1ZZO|A Chain A, Structure Of Mtb Dsbf In Its Oxidized Form
Length = 136
Score = 35.8 bits (81), Expect = 0.12, Method: Composition-based stats.
Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 8/99 (8%)
Query: 451 LKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAV 510
L GK VL FW C C P + + + ++ F VGV A D + A++ V
Sbjct: 23 LLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTF--VGV--AGLDQ---VPAMQEFV 75
Query: 511 LRYGI-SHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKL 548
+Y + + + D D ++W GV P +A V P+G +
Sbjct: 76 NKYPVKTFTQLADTDGSVWANFGVTQQPAYAFVDPHGNV 114
>pdb|3S2K|A Chain A, Structural Basis Of Wnt Signaling Inhibition By Dickkopf
Binding To Lrp56.
pdb|3S2K|B Chain B, Structural Basis Of Wnt Signaling Inhibition By Dickkopf
Binding To Lrp56
Length = 629
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 44/100 (44%), Gaps = 17/100 (17%)
Query: 595 LFTSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDG-NFIVQIGSSGEEGLRDGSFDD 653
LF S L P LA+D +LF +DS+ RI +DL G N IV +D
Sbjct: 469 LFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRIV--------------LED 514
Query: 654 ATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRT 693
+ +P GL +N LY D + + +ID RT
Sbjct: 515 SNILQPVGLT--VFENWLYWIDKQQQMIEKIDMTGREGRT 552
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 600 LKFPGKLAIDILNNRLFISDSNHNRIVVTDLDG 632
L +P +A+D L L+ +D+ NRI V+ LDG
Sbjct: 77 LDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDG 109
>pdb|3K1Z|A Chain A, Crystal Structure Of Human Haloacid Dehalogenase-like
Hydrolase Domain Containing 3 (hdhd3)
Length = 263
Score = 35.8 bits (81), Expect = 0.12, Method: Composition-based stats.
Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
Query: 142 DSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAA 201
D++A ++Y D ++ P + GA + + +C+++GL++AV S+ DR
Sbjct: 84 DAQAVAPIAEQLYKD-FSHPCTWQVLDGAEDTLRECRTRGLRLAVISNFDRRLEGILGGL 142
Query: 202 AGLPVSMFDAIVSADAFENLKPAPDIFLSASKI 234
FD +++++A KP P IF A ++
Sbjct: 143 G--LREHFDFVLTSEAAGWPKPDPRIFQEALRL 173
>pdb|3IOS|A Chain A, Structure Of Mtb Dsbf In Its Mixed Oxidized And Reduced
Forms
Length = 150
Score = 35.8 bits (81), Expect = 0.13, Method: Composition-based stats.
Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 8/99 (8%)
Query: 451 LKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAV 510
L GK VL FW C C P + + + ++ F VGV A D + A++ V
Sbjct: 37 LLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTF--VGV--AGLDQ---VPAMQEFV 89
Query: 511 LRYGI-SHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKL 548
+Y + + + D D ++W GV P +A V P+G +
Sbjct: 90 NKYPVKTFTQLADTDGSVWANFGVTQQPAYAFVDPHGNV 128
>pdb|1LU4|A Chain A, 1.1 Angstrom Resolution Crystal Structure Of A Secreted
Mycobacterium Tuberculosis Disulfide Oxidoreductase
Homologous To E. Coli Dsbe: Implications For Functions
Length = 136
Score = 35.4 bits (80), Expect = 0.15, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 7/96 (7%)
Query: 451 LKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAV 510
L+GK VL FWT C C P L + + T VG+ + D+ A+++ V
Sbjct: 22 LQGKPAVLWFWTPWCPFCNAEAPSLS--QVAAANPAVTFVGIAT-----RADVGAMQSFV 74
Query: 511 LRYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNG 546
+Y ++ +ND D +W V P F +G
Sbjct: 75 SKYNLNFTNLNDADGVIWARYNVPWQPAFVFYRADG 110
>pdb|1X42|A Chain A, Crystal Structure Of A Haloacid Dehalogenase Family
Protein (Ph0459) From Pyrococcus Horikoshii Ot3
Length = 232
Score = 35.4 bits (80), Expect = 0.16, Method: Composition-based stats.
Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 4/100 (4%)
Query: 148 KRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVS 207
+ F+EI+L + + G +P +E++ K K V + +D + A+L A G+
Sbjct: 85 ENFWEIHLRXHQR--YGELYPEVVEVLKSLKGK-YHVGXITDSDTEYLXAHLDALGIK-D 140
Query: 208 MFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIED 247
+FD+I +++ KP P IF A K V E + + D
Sbjct: 141 LFDSITTSEEAGFFKPHPRIFELALKKAGVKGEEAVYVGD 180
>pdb|3UM9|A Chain A, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Bpro0530
pdb|3UM9|B Chain B, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Bpro0530
Length = 230
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 167 FPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPD 226
F + + Q ++ GLK A+ S+ R + + +GL S FD ++S D KP
Sbjct: 98 FADVPQALQQLRAAGLKTAILSNGSRHSIRQVVGNSGLTNS-FDHLISVDEVRLFKPHQK 156
Query: 227 IFLSASKILNVPTSECIVI 245
++ A L++ SE + +
Sbjct: 157 VYELAMDTLHLGESEILFV 175
>pdb|3HDC|A Chain A, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
Length = 158
Score = 34.7 bits (78), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 54/137 (39%), Gaps = 13/137 (9%)
Query: 419 SDVENRKTTPIVPEFP-AKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEF 477
SD +T + P F L N + Q+R GK+V+++FW C C P +
Sbjct: 10 SDAPLVRTGALAPNFKLPTLSGENKSLAQYR----GKIVLVNFWASWCPYCRDEXPSXDR 65
Query: 478 LEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRELGVNSWP 537
L K + V+ V+ K EK R +S ++D + + G N P
Sbjct: 66 LVKSFPKGDLVVLAVNVEKRFPEK--------YRRAPVSFNFLSDATGQVQQRYGANRLP 117
Query: 538 TFAVVGPNGKLLAQLAG 554
+V G + ++ G
Sbjct: 118 DTFIVDRKGIIRQRVTG 134
>pdb|1QH9|A Chain A, Enzyme-Product Complex Of L-2-Haloacid Dehalogenase
pdb|1JUD|A Chain A, L-2-haloacid Dehalogenase
Length = 232
Score = 34.3 bits (77), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 174 INQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASK 233
+ + K +GLK+A+ S+ +DA ++ AGL FD ++S D + KP ++ A +
Sbjct: 104 LRELKRRGLKLAILSNGSPQSIDAVVSHAGLR-DGFDHLLSVDPVQVYKPDNRVYELAEQ 162
Query: 234 ILNVPTSECIVI 245
L + S + +
Sbjct: 163 ALGLDRSAILFV 174
>pdb|1KNG|A Chain A, Crystal Structure Of Ccmg Reducing Oxidoreductase At 1.14
A
Length = 156
Score = 34.3 bits (77), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 46/106 (43%), Gaps = 11/106 (10%)
Query: 451 LKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKD-LEAIRNA 509
KGKV +++ W C+ C P L + KD F +VG+ N KD + R
Sbjct: 40 FKGKVSLVNVWASWCVPCHDEAP---LLTELGKDKRFQLVGI------NYKDAADNARRF 90
Query: 510 VLRYGISHPVVN-DGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAG 554
+ RYG V D + E GV P VVG G ++ +L G
Sbjct: 91 LGRYGNPFGRVGVDANGRASIEWGVYGVPETFVVGREGTIVYKLVG 136
>pdb|1ZRM|A Chain A, Crystal Structure Of The Reaction Intermediate Of
L-2-Haloacid Dehalogenase With 2-Chloro-N-Butyrate
pdb|1ZRN|A Chain A, Intermediate Structure Of L-2-haloacid Dehalogenase With
Monochloroacetate
Length = 232
Score = 34.3 bits (77), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 174 INQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASK 233
+ + K +GLK+A+ S+ +DA ++ AGL FD ++S D + KP ++ A +
Sbjct: 104 LRELKRRGLKLAILSNGSPQSIDAVVSHAGLR-DGFDHLLSVDPVQVYKPDNRVYELAEQ 162
Query: 234 ILNVPTSECIVI 245
L + S + +
Sbjct: 163 ALGLDRSAILFV 174
>pdb|2O9R|A Chain A, Beta-Glucosidase B Complexed With Thiocellobiose
Length = 452
Score = 33.9 bits (76), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 8/54 (14%)
Query: 389 VLFGVNRPSFEQTEGGSSQSERIQQFVNYISDVENRKTTPIVPEFPAKLDWLNT 442
L+ + P + + EGG +Q E IQ F Y S + +R F +++W NT
Sbjct: 123 TLYHWDLPQWIEDEGGWTQRETIQHFKTYASVIMDR--------FGERINWWNT 168
>pdb|2JIE|A Chain A, Beta-Glucosidase B From Bacillus Polymyxa Complexed With
2- F-Glucose
Length = 454
Score = 33.9 bits (76), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 8/54 (14%)
Query: 389 VLFGVNRPSFEQTEGGSSQSERIQQFVNYISDVENRKTTPIVPEFPAKLDWLNT 442
L+ + P + + EGG +Q E IQ F Y S + +R F +++W NT
Sbjct: 125 TLYHWDLPQWIEDEGGWTQRETIQHFKTYASVIMDR--------FGERINWWNT 170
>pdb|2O9P|A Chain A, Beta-Glucosidase B From Paenibacillus Polymyxa
pdb|2O9T|A Chain A, Beta-Glucosidase B From Bacillus Polymyxa Complexed With
Glucose
pdb|2Z1S|A Chain A, Beta-Glucosidase B From Paenibacillus Polymyxa Complexed
With Cellotetraose
Length = 454
Score = 33.9 bits (76), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 8/54 (14%)
Query: 389 VLFGVNRPSFEQTEGGSSQSERIQQFVNYISDVENRKTTPIVPEFPAKLDWLNT 442
L+ + P + + EGG +Q E IQ F Y S + +R F +++W NT
Sbjct: 125 TLYHWDLPQWIEDEGGWTQRETIQHFKTYASVIMDR--------FGERINWWNT 170
>pdb|3DVW|A Chain A, Crystal Structure Of Reduced Dsba1 From Neisseria
Meningitidis
Length = 193
Score = 33.9 bits (76), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 453 GKVVVLDFWTYCCINCMHVLPDLEFLEKKYKD 484
GKV VL+F+ Y C +C H+ P L K +KD
Sbjct: 24 GKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKD 55
>pdb|3SOQ|A Chain A, The Structure Of The First Ywtd Beta Propeller Domain Of
Lrp6 In Complex With A Dkk1 Peptide
pdb|3SOV|A Chain A, The Structure Of A Beta Propeller Domain In Complex With
Peptide S
Length = 318
Score = 33.5 bits (75), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 595 LFTSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNF 634
+ S L P LA D L +L+ +DS NRI V++LDG+
Sbjct: 73 VVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL 112
>pdb|3HZ8|A Chain A, Crystal Structure Of The Oxidized T176v Dsba1 Mutant
Length = 193
Score = 33.5 bits (75), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 453 GKVVVLDFWTYCCINCMHVLPDLEFLEKKYKD 484
GKV VL+F+ Y C +C H+ P L K +KD
Sbjct: 24 GKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKD 55
>pdb|3A3T|A Chain A, The Oxidoreductase Nmdsba1 From N. Meningitidis
pdb|3A3T|B Chain B, The Oxidoreductase Nmdsba1 From N. Meningitidis
pdb|3A3T|C Chain C, The Oxidoreductase Nmdsba1 From N. Meningitidis
pdb|3A3T|D Chain D, The Oxidoreductase Nmdsba1 From N. Meningitidis
pdb|3A3T|E Chain E, The Oxidoreductase Nmdsba1 From N. Meningitidis
pdb|3A3T|F Chain F, The Oxidoreductase Nmdsba1 From N. Meningitidis
Length = 210
Score = 33.5 bits (75), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 453 GKVVVLDFWTYCCINCMHVLPDLEFLEKKYKD 484
GKV VL+F+ Y C +C H+ P L K +KD
Sbjct: 41 GKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKD 72
>pdb|3SOB|B Chain B, The Structure Of The First Ywtd Beta Propeller Domain Of
Lrp6 In Complex With A Fab
Length = 316
Score = 33.5 bits (75), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 595 LFTSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNF 634
+ S L P LA D L +L+ +DS NRI V++LDG+
Sbjct: 70 VVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL 109
>pdb|3U26|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or48
Length = 234
Score = 33.1 bits (74), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 167 FPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPD 226
+P +E++ K K V + +D + A L A G+ +FD+I +++ KP P
Sbjct: 102 YPEVVEVLKSLKGK-YHVGXITDSDTEQAXAFLDALGIK-DLFDSITTSEEAGFFKPHPR 159
Query: 227 IFLSASKILNVPTSECIVIED 247
IF A K V E + + D
Sbjct: 160 IFELALKKAGVKGEEAVYVGD 180
>pdb|3EYT|A Chain A, Crystal Structure Of Thioredoxin-Like Superfamily Protein
Spoa0173
pdb|3EYT|B Chain B, Crystal Structure Of Thioredoxin-Like Superfamily Protein
Spoa0173
pdb|3EYT|C Chain C, Crystal Structure Of Thioredoxin-Like Superfamily Protein
Spoa0173
pdb|3EYT|D Chain D, Crystal Structure Of Thioredoxin-Like Superfamily Protein
Spoa0173
Length = 158
Score = 33.1 bits (74), Expect = 0.79, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 439 WLNTAPLQFRRDLKGKVVVLDFWTYCCINCM-HVLPDLEFLEKKYKDMPFTVVGVHSAKF 497
W N+A DL+GKV+V++ + C C+ H +P + + + + V+G+H+
Sbjct: 14 WFNSATDLTLADLRGKVIVIEAFQXLCPGCVXHGIPLAQKVRAAFPEDKVAVLGLHTVFE 73
Query: 498 DNEKDLEAIRNAVL-RYGISHPV 519
+E A L Y I PV
Sbjct: 74 HHEAXTPISLKAFLHEYRIKFPV 96
>pdb|4FFD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or48
Length = 234
Score = 33.1 bits (74), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 167 FPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPD 226
+P +E++ K K V + + +D + A L A G+ +FD+I +++ KP P
Sbjct: 102 YPEVVEVLKSLKGK-YHVGMITDSDTEQAMAFLDALGIK-DLFDSITTSEEAGFFKPHPR 159
Query: 227 IFLSASKILNVPTSECIVIED 247
IF A K V E + + D
Sbjct: 160 IFELALKKAGVKGEEAVYVGD 180
>pdb|3FKF|A Chain A, Thiol-Disulfide Oxidoreductase From Bacteroides Fragilis
Nctc 9343
pdb|3FKF|B Chain B, Thiol-Disulfide Oxidoreductase From Bacteroides Fragilis
Nctc 9343
pdb|3FKF|C Chain C, Thiol-Disulfide Oxidoreductase From Bacteroides Fragilis
Nctc 9343
pdb|3FKF|D Chain D, Thiol-Disulfide Oxidoreductase From Bacteroides Fragilis
Nctc 9343
Length = 148
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 18/125 (14%)
Query: 451 LKGKVVVLDFWTYCCINCMHVLPDLEFLEKKY-KDMPFTVVGVHSAKFDNEKDLEAIRNA 509
+ + ++L+FW C +L+ L K+Y K+ F +G+ S D E AI+
Sbjct: 31 FRNRYLLLNFWASWCDPQPEANAELKRLNKEYKKNKNFAXLGI-SLDIDREAWETAIKKD 89
Query: 510 VLRY-------GISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQ-LAGEGHRKDL 561
L + G+S ++ + + PT ++ P GK+LA+ + GE L
Sbjct: 90 TLSWDQVCDFTGLSSETA--------KQYAILTLPTNILLSPTGKILARDIQGEALTGKL 141
Query: 562 DDLVE 566
+L++
Sbjct: 142 KELLK 146
>pdb|2HDO|A Chain A, Crystal Structure Of Putative Phosphoglycolate Phosphatase
(Np_784602.1) From Lactobacillus Plantarum At 1.50 A
Resolution
Length = 209
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 69/172 (40%), Gaps = 19/172 (11%)
Query: 81 AVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVT---VEDFLPFMGTGEANFLGGVASVKG 137
A+ FD+DG L NS+ +V A G + + P LG AS
Sbjct: 6 ALXFDIDGTLTNSQPAYTTVXREVLATYGKPFSPAQAQKTFPXAAEQAXTELGIAAS--- 62
Query: 138 VKGFDSEAAKKRFFEIYLDKYAKPNSGIG-FPGALELINQCKSKGLKVAVASSADRIKVD 196
FD A+ Y D A I +PG L Q S+ L++ + +S R +++
Sbjct: 63 --EFDHFQAQ------YEDVXASHYDQIELYPGITSLFEQLPSE-LRLGIVTSQRRNELE 113
Query: 197 ANLAAAGLPVSMFDAI-VSADAFENLKPAPDIFLSASKILNVPTSECIVIED 247
+ + P A+ +SAD KP P L+A + +NV + I D
Sbjct: 114 SGXRS--YPFXXRXAVTISADDTPKRKPDPLPLLTALEKVNVAPQNALFIGD 163
>pdb|2VIM|A Chain A, X-Ray Structure Of Fasciola Hepatica Thioredoxin
Length = 104
Score = 32.3 bits (72), Expect = 1.3, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGV 492
KG+++V+DF+ C C ++ P +E L K+ ++ F V V
Sbjct: 18 KGRLIVVDFFAQWCGPCRNIAPKVEALAKEIPEVEFAKVDV 58
>pdb|1T00|A Chain A, The Structure Of Thioredoxin From S. Coelicolor
Length = 112
Score = 31.6 bits (70), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 447 FRRDL--KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKD 484
F +D+ K V++DFW C C + P LE + +Y D
Sbjct: 15 FEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGD 54
>pdb|2LS5|A Chain A, Solution Structure Of A Putative Protein Disulfide
Isomerase From Bacteroides Thetaiotaomicron
Length = 159
Score = 31.6 bits (70), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 13/74 (17%)
Query: 451 LKGKVVVLDFWTYCCINCMHVLPDLEFLEK----KYKD-MPFTVVGVHSAKFDNEKDLEA 505
L+GKVV+L F C C +P F+EK K+KD F ++G+ D ++ LE
Sbjct: 31 LRGKVVMLQFTASWCGVCRKEMP---FIEKDIWLKHKDNADFALIGI-----DRDEPLEK 82
Query: 506 IRNAVLRYGISHPV 519
+ G+++P+
Sbjct: 83 VLAFAKSTGVTYPL 96
>pdb|3RAZ|A Chain A, The Crystal Structure Of Thioredoxin-Related Protein From
Neisseria Meningitidis Serogroup B
Length = 151
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 49/143 (34%), Gaps = 28/143 (19%)
Query: 439 WLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFD 498
W + P Q + LK V +++ W C C P K K VG+ D
Sbjct: 11 WKDNTP-QSLQSLKAPVRIVNLWATWCGPCRKEXPAXSKWYKAQKKGSVDXVGIALDTSD 69
Query: 499 NEKDLEAIRNAVLRYGISHPVVNDGDMNLWRELGVNS-------------WPTFAVVGPN 545
N I N + + +S+P+ WR G NS P V P
Sbjct: 70 N------IGNFLKQTPVSYPI--------WRYTGANSRNFXKTYGNTVGVLPFTVVEAPK 115
Query: 546 GKLLAQLAGEGHRKDLDDLVEAA 568
+ GE + K L D V+ A
Sbjct: 116 CGYRQTITGEVNEKSLTDAVKLA 138
>pdb|4FL0|A Chain A, Crystal Structure Of Ald1 From Arabidopsis Thaliana
pdb|4FL0|B Chain B, Crystal Structure Of Ald1 From Arabidopsis Thaliana
Length = 456
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 11/96 (11%)
Query: 724 KPINEKVYIAMAG-QHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSP 782
+PI E++ M+ H + STV+G + G G E+ G+ +L + A+ L
Sbjct: 82 EPIPEQITSHMSNFAHGL---STVEG----YRGYGLEQ---GNKTLRKAIAETFYRDLHV 131
Query: 783 DFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFP 818
E++V+D S I L L G + +A DP FP
Sbjct: 132 KSNEVFVSDGAQSDISRLQLLLGSNVTIAVQDPTFP 167
>pdb|2Z0F|A Chain A, Crystal Structure Of Putative Phosphoglucomutase From
Thermus Thermophilus Hb8
pdb|2Z0F|B Chain B, Crystal Structure Of Putative Phosphoglucomutase From
Thermus Thermophilus Hb8
Length = 524
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Query: 475 LEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRELGVN 534
L E + PF G++ K DLEAIR + LR G+ + + +W L +
Sbjct: 175 LPLREALARAKPFDYAGLYVEKVAEAVDLEAIRASGLRIGVD--PLGGASLRVWERLAES 232
Query: 535 SWPTFAVVGPN 545
VV P
Sbjct: 233 HGLPLEVVNPT 243
>pdb|2IRF|G Chain G, Crystal Structure Of An Irf-2DNA COMPLEX.
pdb|2IRF|H Chain H, Crystal Structure Of An Irf-2DNA COMPLEX.
pdb|2IRF|I Chain I, Crystal Structure Of An Irf-2DNA COMPLEX.
pdb|2IRF|J Chain J, Crystal Structure Of An Irf-2DNA COMPLEX.
pdb|2IRF|K Chain K, Crystal Structure Of An Irf-2DNA COMPLEX.
pdb|2IRF|L Chain L, Crystal Structure Of An Irf-2DNA COMPLEX
Length = 113
Score = 31.2 bits (69), Expect = 3.5, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 470 HVLPDLEFLEKKYKDMPFTVVGVHSAK--FDNEKDLEAIRNAVLRYGISHPVVNDGDMNL 527
+ +P L++L K+ K F + +H+A+ +D EKD RN + G P ++ D
Sbjct: 19 NTIPGLKWLNKEKK--IFQIPWMHAARHGWDVEKDAPLFRNWAIHTGKHQPGIDKPDPKT 76
Query: 528 WR---ELGVNSWP 537
W+ +NS P
Sbjct: 77 WKANFRCAMNSLP 89
>pdb|1IRF|A Chain A, Interferon Regulatory Factor-2 Dna Binding Domain, Nmr,
Minimized Average Structure
pdb|1IRG|A Chain A, Interferon Regulatory Factor-2 Dna Binding Domain, Nmr, 20
Structures
Length = 112
Score = 31.2 bits (69), Expect = 3.7, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 470 HVLPDLEFLEKKYKDMPFTVVGVHSAK--FDNEKDLEAIRNAVLRYGISHPVVNDGDMNL 527
+ +P L++L K+ K F + +H+A+ +D EKD RN + G P ++ D
Sbjct: 18 NTIPGLKWLNKEKK--IFQIPWMHAARHGWDVEKDAPLFRNWAIHTGKHQPGIDKPDPKT 75
Query: 528 WR---ELGVNSWP 537
W+ +NS P
Sbjct: 76 WKANFRCAMNSLP 88
>pdb|3RJL|A Chain A, Crystal Structure Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Bacillus Licheniformis (Target
Nysgrc-000337)
pdb|3RJL|B Chain B, Crystal Structure Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Bacillus Licheniformis (Target
Nysgrc-000337)
pdb|3RJL|C Chain C, Crystal Structure Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Bacillus Licheniformis (Target
Nysgrc-000337)
pdb|3RJL|D Chain D, Crystal Structure Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Bacillus Licheniformis (Target
Nysgrc-000337)
pdb|3RJL|E Chain E, Crystal Structure Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Bacillus Licheniformis (Target
Nysgrc-000337)
pdb|3RJL|F Chain F, Crystal Structure Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Bacillus Licheniformis (Target
Nysgrc-000337)
pdb|3RJL|G Chain G, Crystal Structure Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Bacillus Licheniformis (Target
Nysgrc-000337)
pdb|3RJL|H Chain H, Crystal Structure Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Bacillus Licheniformis (Target
Nysgrc-000337)
Length = 538
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 482 YKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGD 524
YK PFT G+ + EK LE + N L G S+P+V DG+
Sbjct: 5 YKHEPFTNFGIEENRKAFEKALETVNNEWL--GQSYPLVIDGE 45
>pdb|3EI8|A Chain A, Crystal Structure Of K270n Variant Of Ll-Diaminopimelate
Aminotransferase From Arabidopsis Thaliana Complexed
With Ll-Dap: External Aldimine Form
pdb|3EI8|B Chain B, Crystal Structure Of K270n Variant Of Ll-Diaminopimelate
Aminotransferase From Arabidopsis Thaliana Complexed
With Ll-Dap: External Aldimine Form
pdb|3EI9|A Chain A, Crystal Structure Of K270n Variant Of Ll-diaminopimelate
Aminotransferase From Arabidopsis Thaliana Complexed
With L-glu: External Aldimine Form
pdb|3EI9|B Chain B, Crystal Structure Of K270n Variant Of Ll-diaminopimelate
Aminotransferase From Arabidopsis Thaliana Complexed
With L-glu: External Aldimine Form
pdb|3EIB|A Chain A, Crystal Structure Of K270n Variant Of Ll-Diaminopimelate
Aminotransferase From Arabidopsis Thaliana
pdb|3EIB|B Chain B, Crystal Structure Of K270n Variant Of Ll-Diaminopimelate
Aminotransferase From Arabidopsis Thaliana
Length = 432
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 13/97 (13%)
Query: 724 KPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQP--SGISLS 781
+PI E + AMA + E ST++G +SG G E+ G+ L + A+ G+ +
Sbjct: 68 EPIPEVITSAMAKKAH--ELSTIEG----YSGYGAEQ---GAKPLRAAIAKTFYGGLGIG 118
Query: 782 PDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFP 818
D +++V+D I L + G + +A DP +P
Sbjct: 119 DD--DVFVSDGAKCDISRLQVMFGSNVTIAVQDPSYP 153
>pdb|2Z1Z|A Chain A, Crystal Structure Of Ll-diaminopimelate Aminotransferase
From Arabidopsis Thaliana Complexed With L-malate Ion
pdb|2Z1Z|B Chain B, Crystal Structure Of Ll-diaminopimelate Aminotransferase
From Arabidopsis Thaliana Complexed With L-malate Ion
pdb|3EI5|A Chain A, Crystal Structure Of Ll-Diaminopimelate Aminotransferase
From Arabidopsis Thaliana Complexed With Plp-Glu: An
External Aldimine Mimic
pdb|3EI5|B Chain B, Crystal Structure Of Ll-Diaminopimelate Aminotransferase
From Arabidopsis Thaliana Complexed With Plp-Glu: An
External Aldimine Mimic
pdb|3EI6|A Chain A, Crystal Structure Of Ll-Diaminopimelate Aminotransferase
From Arabidopsis Thaliana Complexed With Plp-Dap: An
External Aldimine Mimic
pdb|3EI6|B Chain B, Crystal Structure Of Ll-Diaminopimelate Aminotransferase
From Arabidopsis Thaliana Complexed With Plp-Dap: An
External Aldimine Mimic
pdb|3EI7|A Chain A, Crystal Structure Of Apo-Ll-Diaminopimelate
Aminotransferase From Arabidopsis Thaliana (No Plp)
pdb|3EI7|B Chain B, Crystal Structure Of Apo-Ll-Diaminopimelate
Aminotransferase From Arabidopsis Thaliana (No Plp)
Length = 432
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 13/97 (13%)
Query: 724 KPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQP--SGISLS 781
+PI E + AMA + E ST++G +SG G E+ G+ L + A+ G+ +
Sbjct: 68 EPIPEVITSAMAKKAH--ELSTIEG----YSGYGAEQ---GAKPLRAAIAKTFYGGLGIG 118
Query: 782 PDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFP 818
D +++V+D I L + G + +A DP +P
Sbjct: 119 DD--DVFVSDGAKCDISRLQVMFGSNVTIAVQDPSYP 153
>pdb|3EIA|A Chain A, Crystal Structure Of K270q Variant Of Ll-Diaminopimelate
Aminotransferase From Arabidopsis Thaliana Complexed
With L-Glu: External Aldimine Form
pdb|3EIA|B Chain B, Crystal Structure Of K270q Variant Of Ll-Diaminopimelate
Aminotransferase From Arabidopsis Thaliana Complexed
With L-Glu: External Aldimine Form
Length = 432
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 13/97 (13%)
Query: 724 KPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQP--SGISLS 781
+PI E + AMA + E ST++G +SG G E+ G+ L + A+ G+ +
Sbjct: 68 EPIPEVITSAMAKKAH--ELSTIEG----YSGYGAEQ---GAKPLRAAIAKTFYGGLGIG 118
Query: 782 PDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFP 818
D +++V+D I L + G + +A DP +P
Sbjct: 119 DD--DVFVSDGAKCDISRLQVMFGSNVTIAVQDPSYP 153
>pdb|1XWA|A Chain A, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|B Chain B, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|C Chain C, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|D Chain D, Drospohila Thioredoxin, Oxidized, P41212
Length = 111
Score = 30.4 bits (67), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 30/115 (26%)
Query: 453 GKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLR 512
GK+VVLDF+ C C + P L L ++ D V+ V D++ + +
Sbjct: 25 GKLVVLDFFATWCGPCKMISPKLVELSTQFAD-NVVVLKV---------DVDECEDIAME 74
Query: 513 YGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEA 567
Y IS S PTF V NG + + AG + K L+D+++A
Sbjct: 75 YNIS------------------SMPTF-VFLKNGVKVEEFAG-ANAKRLEDVIKA 109
>pdb|3C37|A Chain A, X-ray Structure Of The Putative Zn-dependent Peptidase
Q74d82 At The Resolution 1.7 A. Northeast Structural
Genomics Consortium Target Gsr143a
pdb|3C37|B Chain B, X-ray Structure Of The Putative Zn-dependent Peptidase
Q74d82 At The Resolution 1.7 A. Northeast Structural
Genomics Consortium Target Gsr143a
Length = 253
Score = 30.0 bits (66), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 34/74 (45%), Gaps = 8/74 (10%)
Query: 485 MPFTVVGVHSAKF---DNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRELGVNSWPTFAV 541
+P V VH+ DNE +L VL + I+H V G +E G S V
Sbjct: 79 IPGGRVYVHTGLLKAADNETELAG----VLAHEINHAVARHGTRQXTQEYGY-SLVLSLV 133
Query: 542 VGPNGKLLAQLAGE 555
+G N LAQLAG+
Sbjct: 134 LGDNPNXLAQLAGQ 147
>pdb|1XW9|A Chain A, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|B Chain B, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|C Chain C, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|D Chain D, Drospohila Thioredoxin, Oxidized, P21
pdb|1XWB|A Chain A, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|B Chain B, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|C Chain C, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|D Chain D, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWC|A Chain A, Drosophila Thioredoxin, Reduced, P6522
Length = 106
Score = 30.0 bits (66), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 30/115 (26%)
Query: 453 GKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLR 512
GK+VVLDF+ C C + P L L ++ D V+ V D++ + +
Sbjct: 20 GKLVVLDFFATWCGPCKMISPKLVELSTQFAD-NVVVLKV---------DVDECEDIAME 69
Query: 513 YGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEA 567
Y IS S PTF V NG + + AG + K L+D+++A
Sbjct: 70 YNIS------------------SMPTF-VFLKNGVKVEEFAG-ANAKRLEDVIKA 104
>pdb|3M9L|A Chain A, Crystal Structure Of Probable Had Family Hydrolase From
Pseudomonas Fluorescens Pf-5
pdb|2YBD|A Chain A, Crystal Structure Of Probable Had Family Hydrolase From
Pseudomonas Fluorescens Pf-5 With Bound Phosphate
pdb|3R09|A Chain A, Crystal Structure Of Probable Had Family Hydrolase From
Pseudomonas Fluorescens Pf-5 With Bound Mg
Length = 205
Score = 29.6 bits (65), Expect = 8.9, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 34/80 (42%)
Query: 168 PGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDI 227
PGA+EL+ + +G ++ + + R L A GL +A V KP P
Sbjct: 73 PGAVELVRELAGRGYRLGILTRNARELAHVTLEAIGLADCFAEADVLGRDEAPPKPHPGG 132
Query: 228 FLSASKILNVPTSECIVIED 247
L ++ +V S + + D
Sbjct: 133 LLKLAEAWDVSPSRXVXVGD 152
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,224,545
Number of Sequences: 62578
Number of extensions: 1418519
Number of successful extensions: 3498
Number of sequences better than 100.0: 130
Number of HSP's better than 100.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 65
Number of HSP's that attempted gapping in prelim test: 3310
Number of HSP's gapped (non-prelim): 181
length of query: 1089
length of database: 14,973,337
effective HSP length: 109
effective length of query: 980
effective length of database: 8,152,335
effective search space: 7989288300
effective search space used: 7989288300
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)