Query 001380
Match_columns 1089
No_of_seqs 938 out of 5678
Neff 8.7
Searched_HMMs 46136
Date Thu Mar 28 23:20:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001380.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001380hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02919 haloacid dehalogenase 100.0 3E-141 5E-146 1340.8 114.0 1052 2-1089 1-1057(1057)
2 PLN02770 haloacid dehalogenase 99.9 2.4E-26 5.1E-31 249.9 24.0 214 76-295 19-237 (248)
3 PLN02919 haloacid dehalogenase 99.9 4.4E-25 9.4E-30 281.4 35.6 275 648-934 559-844 (1057)
4 PRK13288 pyrophosphatase PpaX; 99.9 6E-26 1.3E-30 242.0 22.5 207 78-295 2-210 (214)
5 TIGR03351 PhnX-like phosphonat 99.9 6.8E-26 1.5E-30 242.8 22.4 210 79-289 1-215 (220)
6 COG0546 Gph Predicted phosphat 99.9 1E-25 2.3E-30 240.2 22.2 210 77-289 2-213 (220)
7 TIGR01422 phosphonatase phosph 99.9 9.8E-26 2.1E-30 246.7 22.5 208 79-289 2-248 (253)
8 PLN02575 haloacid dehalogenase 99.9 1.3E-25 2.8E-30 250.8 23.3 216 77-298 129-346 (381)
9 PRK10826 2-deoxyglucose-6-phos 99.9 2.2E-25 4.8E-30 239.0 22.8 214 78-294 6-220 (222)
10 PRK13226 phosphoglycolate phos 99.9 1.3E-25 2.8E-30 241.3 20.8 208 77-289 10-220 (229)
11 PLN03243 haloacid dehalogenase 99.9 4.5E-25 9.8E-30 239.6 23.0 215 77-298 22-238 (260)
12 PRK13478 phosphonoacetaldehyde 99.9 4.7E-25 1E-29 243.0 22.7 214 77-295 2-254 (267)
13 TIGR01449 PGP_bact 2-phosphogl 99.9 6.1E-25 1.3E-29 234.3 21.3 205 82-289 1-209 (213)
14 COG0637 Predicted phosphatase/ 99.9 1.3E-24 2.9E-29 230.8 19.1 190 78-270 1-190 (221)
15 PRK13223 phosphoglycolate phos 99.9 4.9E-24 1.1E-28 234.3 22.9 211 77-289 11-225 (272)
16 PRK11587 putative phosphatase; 99.9 6.3E-24 1.4E-28 226.8 22.1 201 78-290 2-204 (218)
17 PRK13225 phosphoglycolate phos 99.9 7.4E-24 1.6E-28 231.5 22.0 205 78-295 61-267 (273)
18 PLN02940 riboflavin kinase 99.9 1E-23 2.3E-28 241.7 23.7 211 77-293 9-220 (382)
19 TIGR01454 AHBA_synth_RP 3-amin 99.9 1E-23 2.2E-28 223.3 21.3 200 82-295 1-203 (205)
20 PRK13222 phosphoglycolate phos 99.9 1.8E-23 4E-28 225.1 22.6 215 76-295 3-221 (226)
21 PRK10725 fructose-1-P/6-phosph 99.9 3E-23 6.5E-28 216.6 21.4 186 75-266 1-186 (188)
22 TIGR02253 CTE7 HAD superfamily 99.9 4.2E-23 9.1E-28 221.4 19.3 207 78-289 1-220 (221)
23 TIGR01990 bPGM beta-phosphoglu 99.9 5.3E-23 1.2E-27 214.1 19.2 183 81-266 1-185 (185)
24 PRK10563 6-phosphogluconate ph 99.9 5.7E-23 1.2E-27 220.3 18.7 204 78-289 3-208 (221)
25 PLN02779 haloacid dehalogenase 99.9 1.5E-22 3.2E-27 223.8 22.3 213 78-295 39-274 (286)
26 TIGR02009 PGMB-YQAB-SF beta-ph 99.9 1.3E-22 2.9E-27 211.1 19.0 183 79-265 1-185 (185)
27 cd03012 TlpA_like_DipZ_like Tl 99.9 8.4E-23 1.8E-27 197.9 13.4 125 431-556 1-126 (126)
28 PRK09449 dUMP phosphatase; Pro 99.9 6.7E-22 1.5E-26 212.5 20.4 201 78-295 2-222 (224)
29 TIGR02254 YjjG/YfnB HAD superf 99.9 3.1E-22 6.8E-27 215.2 17.4 201 79-289 1-220 (224)
30 TIGR02252 DREG-2 REG-2-like, H 99.9 1.3E-21 2.9E-26 206.8 18.8 180 80-264 1-203 (203)
31 PRK06698 bifunctional 5'-methy 99.9 2.4E-21 5.3E-26 229.4 20.6 209 77-296 239-454 (459)
32 PLN02811 hydrolase 99.9 3.8E-21 8.2E-26 205.6 19.7 203 86-293 1-210 (220)
33 PRK15412 thiol:disulfide inter 99.9 2.2E-21 4.7E-26 200.6 15.9 138 425-574 40-181 (185)
34 PLN02399 phospholipid hydroper 99.9 1.5E-21 3.2E-26 205.3 14.4 145 423-570 72-235 (236)
35 TIGR01428 HAD_type_II 2-haloal 99.9 3.3E-21 7.1E-26 202.9 16.9 179 79-268 1-194 (198)
36 PRK14988 GMP/IMP nucleotidase; 99.9 3.7E-21 8E-26 205.5 16.9 106 164-270 92-198 (224)
37 PF08534 Redoxin: Redoxin; In 99.9 1.6E-21 3.5E-26 194.4 12.4 126 425-557 1-136 (146)
38 KOG4659 Uncharacterized conser 99.9 4.1E-20 8.8E-25 217.9 25.0 301 598-921 362-691 (1899)
39 PRK10748 flavin mononucleotide 99.9 7E-21 1.5E-25 205.8 16.1 204 76-289 7-234 (238)
40 PLN02412 probable glutathione 99.8 5.6E-21 1.2E-25 193.8 13.6 143 426-571 5-166 (167)
41 PF08450 SGL: SMP-30/Gluconola 99.8 5.9E-19 1.3E-23 192.5 30.5 230 602-910 1-245 (246)
42 PTZ00056 glutathione peroxidas 99.8 1.1E-20 2.4E-25 196.5 15.6 150 423-575 12-184 (199)
43 PF13419 HAD_2: Haloacid dehal 99.8 8.9E-21 1.9E-25 195.2 14.0 175 82-265 1-176 (176)
44 KOG2914 Predicted haloacid-hal 99.8 1.5E-19 3.2E-24 187.2 20.6 211 74-289 5-218 (222)
45 cd00340 GSH_Peroxidase Glutath 99.8 1.1E-20 2.3E-25 189.3 11.4 131 430-564 2-151 (152)
46 TIGR01548 HAD-SF-IA-hyp1 haloa 99.8 9E-20 2E-24 191.6 18.3 177 80-258 1-197 (197)
47 PRK14018 trifunctional thiored 99.8 4.3E-20 9.3E-25 214.0 16.6 153 424-581 32-193 (521)
48 TIGR00385 dsbE periplasmic pro 99.8 8.6E-20 1.9E-24 186.8 13.8 135 424-570 34-172 (173)
49 TIGR02247 HAD-1A3-hyp Epoxide 99.8 2E-19 4.4E-24 191.3 16.8 183 79-269 2-199 (211)
50 COG1011 Predicted hydrolase (H 99.8 2.6E-19 5.7E-24 193.2 16.7 127 164-295 98-226 (229)
51 TIGR02540 gpx7 putative glutat 99.8 1E-19 2.2E-24 182.6 12.1 134 432-568 4-152 (153)
52 cd03010 TlpA_like_DsbE TlpA-li 99.8 1.5E-19 3.2E-24 175.6 12.5 123 428-561 1-126 (127)
53 PTZ00256 glutathione peroxidas 99.8 2.3E-19 4.9E-24 185.1 13.8 142 426-570 16-182 (183)
54 PRK03147 thiol-disulfide oxido 99.8 5.5E-19 1.2E-23 181.7 16.0 138 423-568 34-171 (173)
55 PRK09437 bcp thioredoxin-depen 99.8 3.7E-19 8E-24 179.0 14.3 136 422-566 2-150 (154)
56 PF00578 AhpC-TSA: AhpC/TSA fa 99.8 2E-19 4.4E-24 174.0 11.9 117 426-551 1-124 (124)
57 TIGR01509 HAD-SF-IA-v3 haloaci 99.8 1.2E-18 2.7E-23 180.9 18.7 177 81-265 1-183 (183)
58 TIGR01993 Pyr-5-nucltdase pyri 99.8 2.6E-19 5.6E-24 186.0 13.5 170 80-265 1-184 (184)
59 cd03008 TryX_like_RdCVF Trypar 99.8 1.6E-19 3.5E-24 175.6 10.4 105 441-551 14-128 (146)
60 PRK09456 ?-D-glucose-1-phospha 99.8 3.6E-18 7.7E-23 179.7 20.6 175 80-270 1-189 (199)
61 COG1225 Bcp Peroxiredoxin [Pos 99.8 9.9E-19 2.1E-23 169.2 14.4 124 423-555 3-139 (157)
62 cd03017 PRX_BCP Peroxiredoxin 99.8 6.1E-19 1.3E-23 174.5 13.1 129 428-565 1-139 (140)
63 KOG3085 Predicted hydrolase (H 99.8 1.2E-18 2.6E-23 180.7 15.6 191 76-269 4-216 (237)
64 KOG4659 Uncharacterized conser 99.8 5.8E-18 1.3E-22 200.0 22.8 254 601-864 407-689 (1899)
65 cd02969 PRX_like1 Peroxiredoxi 99.8 1.6E-18 3.5E-23 177.5 16.2 142 427-571 1-154 (171)
66 PRK00522 tpx lipid hydroperoxi 99.8 1.9E-18 4.1E-23 175.4 14.6 134 423-567 17-164 (167)
67 TIGR01549 HAD-SF-IA-v1 haloaci 99.8 4.4E-18 9.5E-23 171.4 16.6 154 81-259 1-154 (154)
68 PHA02597 30.2 hypothetical pro 99.8 1.6E-18 3.6E-23 182.1 14.0 188 78-289 1-194 (197)
69 cd03015 PRX_Typ2cys Peroxiredo 99.8 4.2E-18 9.2E-23 174.5 15.0 125 426-556 1-140 (173)
70 PF08450 SGL: SMP-30/Gluconola 99.8 1.6E-16 3.4E-21 173.4 27.0 207 659-932 2-222 (246)
71 cd03014 PRX_Atyp2cys Peroxired 99.8 5.1E-18 1.1E-22 168.5 13.8 129 426-565 2-141 (143)
72 TIGR01626 ytfJ_HI0045 conserve 99.8 5.3E-18 1.2E-22 170.7 13.8 119 441-570 48-180 (184)
73 cd03018 PRX_AhpE_like Peroxire 99.8 4.9E-18 1.1E-22 170.0 13.5 123 425-556 2-134 (149)
74 TIGR03137 AhpC peroxiredoxin. 99.8 5.7E-18 1.2E-22 175.2 13.1 122 425-554 3-137 (187)
75 PLN02954 phosphoserine phospha 99.7 1.4E-17 3.1E-22 178.9 16.2 197 74-289 7-219 (224)
76 TIGR00213 GmhB_yaeD D,D-heptos 99.7 1.6E-17 3.5E-22 170.7 15.4 122 165-289 26-174 (176)
77 PRK08942 D,D-heptose 1,7-bisph 99.7 2.6E-17 5.7E-22 170.2 16.2 127 165-296 29-177 (181)
78 PRK10382 alkyl hydroperoxide r 99.7 1.4E-17 3.1E-22 170.4 13.9 123 424-554 2-137 (187)
79 PRK13190 putative peroxiredoxi 99.7 2.3E-17 4.9E-22 172.5 15.5 137 425-568 3-153 (202)
80 cd02967 mauD Methylamine utili 99.7 1.2E-17 2.7E-22 158.8 12.4 109 431-551 1-111 (114)
81 COG4257 Vgb Streptogramin lyas 99.7 5.1E-16 1.1E-20 158.2 24.4 251 600-931 61-313 (353)
82 TIGR00338 serB phosphoserine p 99.7 3E-17 6.4E-22 175.8 15.5 189 74-286 9-210 (219)
83 TIGR02661 MauD methylamine deh 99.7 2.9E-17 6.2E-22 170.3 14.8 132 424-568 46-178 (189)
84 PRK13599 putative peroxiredoxi 99.7 2.5E-17 5.3E-22 172.9 13.7 123 425-553 3-136 (215)
85 TIGR01493 HAD-SF-IA-v2 Haloaci 99.7 1.6E-17 3.6E-22 171.1 10.5 161 81-258 1-175 (175)
86 cd03011 TlpA_like_ScsD_MtbDsbE 99.7 4E-17 8.7E-22 157.6 12.5 121 431-564 1-121 (123)
87 PTZ00137 2-Cys peroxiredoxin; 99.7 8.3E-17 1.8E-21 171.6 15.5 150 424-579 68-234 (261)
88 PRK15000 peroxidase; Provision 99.7 1E-16 2.2E-21 166.9 14.9 148 425-577 3-169 (200)
89 PRK13191 putative peroxiredoxi 99.7 7.3E-17 1.6E-21 169.5 13.6 138 424-567 7-159 (215)
90 PRK06769 hypothetical protein; 99.7 5.1E-17 1.1E-21 166.0 12.1 124 165-289 28-167 (173)
91 TIGR01691 enolase-ppase 2,3-di 99.7 6E-16 1.3E-20 162.8 20.2 185 79-269 1-199 (220)
92 PF10282 Lactonase: Lactonase, 99.7 1.3E-14 2.8E-19 166.1 32.2 279 599-930 35-331 (345)
93 cd03016 PRX_1cys Peroxiredoxin 99.7 1.1E-16 2.4E-21 167.8 13.2 135 426-567 1-152 (203)
94 cd02970 PRX_like2 Peroxiredoxi 99.7 1.1E-16 2.4E-21 160.2 12.4 117 429-554 1-148 (149)
95 cd02971 PRX_family Peroxiredox 99.7 1.3E-16 2.8E-21 157.9 12.4 120 429-557 1-131 (140)
96 cd02964 TryX_like_family Trypa 99.7 8.1E-17 1.7E-21 157.3 10.7 105 441-552 5-116 (132)
97 PRK11133 serB phosphoserine ph 99.7 3.1E-16 6.6E-21 174.6 16.6 199 76-298 107-315 (322)
98 cd02968 SCO SCO (an acronym fo 99.7 1E-16 2.2E-21 159.1 11.3 120 429-554 1-142 (142)
99 cd03009 TryX_like_TryX_NRX Try 99.7 8.9E-17 1.9E-21 157.0 9.2 109 438-552 4-116 (131)
100 PRK13189 peroxiredoxin; Provis 99.7 4.5E-16 9.8E-21 164.6 14.7 138 424-567 9-161 (222)
101 PRK13728 conjugal transfer pro 99.7 4.1E-16 8.8E-21 155.9 13.3 120 426-572 51-174 (181)
102 TIGR01685 MDP-1 magnesium-depe 99.7 5.7E-17 1.2E-21 163.2 7.2 110 164-274 44-165 (174)
103 PRK10606 btuE putative glutath 99.7 6E-16 1.3E-20 157.3 14.3 137 429-569 4-181 (183)
104 TIGR01491 HAD-SF-IB-PSPlk HAD- 99.7 5.6E-16 1.2E-20 163.6 13.6 102 165-267 80-191 (201)
105 TIGR01656 Histidinol-ppas hist 99.7 8.9E-16 1.9E-20 152.7 14.2 102 165-268 27-147 (147)
106 cd02966 TlpA_like_family TlpA- 99.7 9.8E-16 2.1E-20 145.5 13.5 113 437-554 4-116 (116)
107 PTZ00253 tryparedoxin peroxida 99.7 7.3E-16 1.6E-20 161.3 13.8 142 422-567 4-159 (199)
108 TIGR01672 AphA HAD superfamily 99.7 1.9E-15 4.1E-20 160.1 16.5 145 81-269 65-214 (237)
109 COG3391 Uncharacterized conser 99.6 1.6E-13 3.4E-18 158.6 33.0 249 601-923 31-285 (381)
110 TIGR01662 HAD-SF-IIIA HAD-supe 99.6 2.1E-15 4.5E-20 147.5 14.8 97 165-266 25-131 (132)
111 PF13905 Thioredoxin_8: Thiore 99.6 6.8E-16 1.5E-20 141.6 10.3 91 453-548 1-95 (95)
112 COG3386 Gluconolactonase [Carb 99.6 8.1E-14 1.8E-18 153.5 28.1 241 598-912 22-277 (307)
113 TIGR01452 PGP_euk phosphoglyco 99.6 3.7E-16 8E-21 173.0 6.5 122 166-289 144-279 (279)
114 PRK11028 6-phosphogluconolacto 99.6 4.9E-13 1.1E-17 152.7 32.4 262 601-923 35-306 (330)
115 TIGR01261 hisB_Nterm histidino 99.6 5.4E-15 1.2E-19 148.3 13.7 102 165-269 29-150 (161)
116 PRK09552 mtnX 2-hydroxy-3-keto 99.6 4.4E-15 9.5E-20 158.6 12.5 189 79-289 3-208 (219)
117 TIGR01664 DNA-3'-Pase DNA 3'-p 99.6 7.1E-15 1.5E-19 148.5 12.0 96 166-264 43-160 (166)
118 PF10282 Lactonase: Lactonase, 99.6 6.6E-13 1.4E-17 152.0 28.9 282 533-875 35-333 (345)
119 TIGR01458 HAD-SF-IIA-hyp3 HAD- 99.6 1.9E-15 4.1E-20 164.8 7.2 123 166-289 121-250 (257)
120 PRK11028 6-phosphogluconolacto 99.6 1.9E-12 4E-17 148.0 31.0 249 613-923 2-260 (330)
121 PRK13582 thrH phosphoserine ph 99.6 7.2E-14 1.6E-18 147.9 16.4 186 79-289 1-191 (205)
122 COG2706 3-carboxymuconate cycl 99.5 1.7E-11 3.7E-16 131.1 33.7 283 598-930 37-330 (346)
123 TIGR02738 TrbB type-F conjugat 99.5 2.6E-14 5.7E-19 141.1 11.4 99 453-569 50-153 (153)
124 PRK10444 UMP phosphatase; Prov 99.5 1.9E-14 4.1E-19 155.3 10.5 205 79-289 1-245 (248)
125 cd02950 TxlA TRX-like protein 99.5 5.5E-14 1.2E-18 138.2 11.8 106 439-570 5-111 (142)
126 COG4257 Vgb Streptogramin lyas 99.5 3.2E-12 7E-17 130.8 24.6 283 536-920 63-346 (353)
127 COG3391 Uncharacterized conser 99.5 4.4E-12 9.6E-17 146.6 28.3 231 600-901 73-308 (381)
128 cd03013 PRX5_like Peroxiredoxi 99.5 5.6E-14 1.2E-18 140.5 10.9 122 426-555 1-140 (155)
129 TIGR02604 Piru_Ver_Nterm putat 99.5 6.2E-12 1.4E-16 145.0 29.2 254 600-912 13-341 (367)
130 TIGR01668 YqeG_hyp_ppase HAD s 99.5 1.1E-13 2.4E-18 141.0 12.4 95 165-269 43-139 (170)
131 TIGR02658 TTQ_MADH_Hv methylam 99.5 3.6E-11 7.9E-16 134.2 33.2 263 612-931 12-339 (352)
132 TIGR03866 PQQ_ABC_repeats PQQ- 99.5 7.7E-11 1.7E-15 132.1 36.2 252 603-931 33-288 (300)
133 PLN02645 phosphoglycolate phos 99.5 1.9E-14 4E-19 161.5 6.6 121 172-295 177-307 (311)
134 TIGR01489 DKMTPPase-SF 2,3-dik 99.5 4.2E-13 9E-18 140.0 16.0 93 165-261 72-184 (188)
135 COG2179 Predicted hydrolase of 99.5 1.5E-13 3.3E-18 131.3 11.2 92 166-267 47-139 (175)
136 COG2706 3-carboxymuconate cycl 99.5 4.5E-11 9.7E-16 127.9 30.9 290 529-875 34-332 (346)
137 cd01427 HAD_like Haloacid deha 99.5 1.5E-13 3.3E-18 134.8 11.5 100 165-265 24-139 (139)
138 KOG3109 Haloacid dehalogenase- 99.5 5.2E-13 1.1E-17 132.7 14.5 182 78-269 14-208 (244)
139 KOG1615 Phosphoserine phosphat 99.5 5.8E-14 1.3E-18 136.3 7.1 197 75-289 12-221 (227)
140 COG0450 AhpC Peroxiredoxin [Po 99.5 5.4E-13 1.2E-17 131.8 14.0 154 424-583 3-174 (194)
141 KOG0910 Thioredoxin-like prote 99.5 1.6E-13 3.4E-18 130.1 9.7 90 452-570 60-149 (150)
142 TIGR01457 HAD-SF-IIA-hyp2 HAD- 99.5 1.3E-13 2.8E-18 149.7 9.0 120 167-289 123-249 (249)
143 COG0647 NagD Predicted sugar p 99.5 6.8E-13 1.5E-17 141.9 14.0 211 75-289 4-261 (269)
144 PRK05446 imidazole glycerol-ph 99.4 9.8E-13 2.1E-17 147.1 14.9 100 165-267 30-149 (354)
145 TIGR03333 salvage_mtnX 2-hydro 99.4 7.7E-13 1.7E-17 140.7 12.6 121 165-289 70-204 (214)
146 COG0560 SerB Phosphoserine pho 99.4 1.7E-12 3.8E-17 136.2 15.0 175 77-267 3-187 (212)
147 KOG1214 Nidogen and related ba 99.4 2.4E-12 5.3E-17 147.3 17.0 205 599-869 1023-1229(1289)
148 TIGR03866 PQQ_ABC_repeats PQQ- 99.4 9.5E-10 2.1E-14 123.2 38.3 235 613-923 1-239 (300)
149 TIGR02137 HSK-PSP phosphoserin 99.4 5.5E-12 1.2E-16 131.8 17.8 181 80-289 2-191 (203)
150 PRK11009 aphA acid phosphatase 99.4 1.7E-12 3.8E-17 137.4 14.1 96 164-269 113-214 (237)
151 COG3386 Gluconolactonase [Carb 99.4 3.7E-11 8E-16 132.6 24.9 210 659-932 27-252 (307)
152 cd02999 PDI_a_ERp44_like PDIa 99.4 5.7E-13 1.2E-17 122.8 8.9 86 449-564 14-99 (100)
153 KOG2882 p-Nitrophenyl phosphat 99.4 7.8E-13 1.7E-17 138.9 10.9 211 75-289 18-299 (306)
154 cd02985 TRX_CDSP32 TRX family, 99.4 1.3E-12 2.8E-17 121.3 10.5 87 450-564 12-98 (103)
155 cd02954 DIM1 Dim1 family; Dim1 99.4 1.3E-12 2.8E-17 120.9 9.2 80 452-560 13-92 (114)
156 cd02963 TRX_DnaJ TRX domain, D 99.4 1.8E-12 3.8E-17 122.2 9.4 89 451-567 22-110 (111)
157 TIGR01681 HAD-SF-IIIC HAD-supe 99.4 1.8E-12 4E-17 125.3 9.7 88 165-257 29-126 (128)
158 cd02956 ybbN ybbN protein fami 99.4 3.1E-12 6.7E-17 117.4 10.3 85 452-565 11-95 (96)
159 cd02948 TRX_NDPK TRX domain, T 99.4 4.1E-12 8.9E-17 117.8 10.5 86 452-567 16-101 (102)
160 TIGR01670 YrbI-phosphatas 3-de 99.4 2.4E-12 5.2E-17 128.9 9.6 110 173-296 36-146 (154)
161 TIGR02726 phenyl_P_delta pheny 99.3 3.8E-12 8.1E-17 128.2 10.4 102 173-288 42-143 (169)
162 TIGR01488 HAD-SF-IB Haloacid D 99.3 6.2E-12 1.3E-16 129.8 12.4 93 165-258 73-177 (177)
163 PHA02530 pseT polynucleotide k 99.3 3.8E-12 8.3E-17 143.1 11.7 103 165-268 187-298 (300)
164 KOG1214 Nidogen and related ba 99.3 4.9E-11 1.1E-15 136.9 19.8 230 612-923 990-1228(1289)
165 PHA02278 thioredoxin-like prot 99.3 6.8E-12 1.5E-16 115.5 9.7 88 452-564 13-100 (103)
166 PF00702 Hydrolase: haloacid d 99.3 2.1E-12 4.6E-17 137.7 7.2 90 164-259 126-215 (215)
167 cd02951 SoxW SoxW family; SoxW 99.3 1E-11 2.2E-16 120.1 10.6 105 452-571 12-121 (125)
168 PRK09381 trxA thioredoxin; Pro 99.3 1.4E-11 3.1E-16 116.0 10.7 89 452-569 20-108 (109)
169 TIGR01490 HAD-SF-IB-hyp1 HAD-s 99.3 3.9E-11 8.4E-16 126.7 14.1 98 165-263 87-195 (202)
170 PLN00410 U5 snRNP protein, DIM 99.3 2.7E-11 5.9E-16 116.6 11.6 104 452-584 22-135 (142)
171 PRK09484 3-deoxy-D-manno-octul 99.3 1.2E-11 2.7E-16 127.6 9.9 98 173-284 56-153 (183)
172 COG0241 HisB Histidinol phosph 99.3 3.3E-11 7.2E-16 120.4 12.4 122 165-289 31-172 (181)
173 TIGR02740 TraF-like TraF-like 99.3 1.6E-11 3.5E-16 133.7 10.7 107 444-570 158-265 (271)
174 cd03006 PDI_a_EFP1_N PDIa fami 99.3 3.6E-11 7.7E-16 112.6 10.9 84 452-564 28-112 (113)
175 TIGR01459 HAD-SF-IIA-hyp4 HAD- 99.3 8.6E-12 1.9E-16 135.3 7.7 99 167-267 140-242 (242)
176 PF13242 Hydrolase_like: HAD-h 99.2 1.4E-11 3.1E-16 107.0 7.1 70 220-289 2-75 (75)
177 PRK10996 thioredoxin 2; Provis 99.2 3.8E-11 8.1E-16 117.9 10.6 88 452-568 51-138 (139)
178 cd02953 DsbDgamma DsbD gamma f 99.2 1.7E-11 3.6E-16 114.4 7.8 91 451-565 9-103 (104)
179 cd02994 PDI_a_TMX PDIa family, 99.2 4.3E-11 9.3E-16 111.0 10.3 86 451-566 15-100 (101)
180 cd03003 PDI_a_ERdj5_N PDIa fam 99.2 2.4E-11 5.3E-16 112.6 8.6 85 451-564 16-100 (101)
181 TIGR01456 CECR5 HAD-superfamil 99.2 9.9E-11 2.1E-15 132.0 14.8 71 219-289 230-316 (321)
182 COG3118 Thioredoxin domain-con 99.2 2.3E-11 4.9E-16 127.9 8.8 92 451-571 41-132 (304)
183 PF07995 GSDH: Glucose / Sorbo 99.2 1.7E-09 3.7E-14 122.6 24.5 274 600-917 1-331 (331)
184 KOG0907 Thioredoxin [Posttrans 99.2 7.1E-11 1.5E-15 108.7 10.0 84 452-566 20-103 (106)
185 cd03000 PDI_a_TMX3 PDIa family 99.2 7E-11 1.5E-15 110.1 10.1 88 452-568 14-103 (104)
186 cd03004 PDI_a_ERdj5_C PDIa fam 99.2 6.3E-11 1.4E-15 110.5 9.4 85 452-564 18-103 (104)
187 KOG1520 Predicted alkaloid syn 99.2 2.7E-09 5.9E-14 116.6 23.3 258 600-920 53-375 (376)
188 COG0386 BtuE Glutathione perox 99.2 2.1E-10 4.5E-15 108.1 12.6 137 430-570 5-161 (162)
189 KOG2501 Thioredoxin, nucleored 99.2 5.5E-11 1.2E-15 114.1 8.5 107 440-551 20-131 (157)
190 cd03005 PDI_a_ERp46 PDIa famil 99.2 5.6E-11 1.2E-15 110.4 8.4 83 454-564 17-101 (102)
191 PF06977 SdiA-regulated: SdiA- 99.2 9.7E-09 2.1E-13 109.7 26.1 220 597-863 18-247 (248)
192 PF13098 Thioredoxin_2: Thiore 99.2 3.2E-11 6.9E-16 114.2 6.1 106 452-565 4-112 (112)
193 TIGR02604 Piru_Ver_Nterm putat 99.2 5.6E-09 1.2E-13 120.5 25.4 215 656-923 13-302 (367)
194 TIGR01460 HAD-SF-IIA Haloacid 99.2 6.1E-11 1.3E-15 127.8 8.4 185 82-268 1-236 (236)
195 TIGR01126 pdi_dom protein disu 99.2 1.1E-10 2.3E-15 108.4 8.9 88 452-567 12-100 (102)
196 cd02986 DLP Dim1 family, Dim1- 99.2 2.7E-10 5.8E-15 104.4 11.1 77 452-557 13-89 (114)
197 cd02993 PDI_a_APS_reductase PD 99.1 1.4E-10 3E-15 109.1 9.2 86 452-564 20-108 (109)
198 PF02239 Cytochrom_D1: Cytochr 99.1 1.4E-08 3.1E-13 116.3 27.6 273 603-931 39-356 (369)
199 KOG0855 Alkyl hydroperoxide re 99.1 3.2E-10 6.9E-15 107.0 11.2 125 423-556 62-195 (211)
200 cd03002 PDI_a_MPD1_like PDI fa 99.1 1.7E-10 3.7E-15 108.6 9.3 88 452-565 17-108 (109)
201 cd02949 TRX_NTR TRX domain, no 99.1 2.8E-10 6.1E-15 104.6 10.3 85 452-565 12-96 (97)
202 cd03065 PDI_b_Calsequestrin_N 99.1 2.4E-10 5.3E-15 107.7 10.0 88 453-569 27-119 (120)
203 smart00577 CPDc catalytic doma 99.1 7.5E-11 1.6E-15 117.3 6.8 94 165-262 45-138 (148)
204 TIGR01686 FkbH FkbH-like domai 99.1 2.7E-10 5.8E-15 128.7 11.5 90 166-261 32-125 (320)
205 TIGR01663 PNK-3'Pase polynucle 99.1 3.8E-10 8.2E-15 132.6 12.9 92 166-260 198-305 (526)
206 cd02996 PDI_a_ERp44 PDIa famil 99.1 2.5E-10 5.3E-15 107.3 9.0 86 452-565 17-108 (108)
207 cd02965 HyaE HyaE family; HyaE 99.1 3.9E-10 8.4E-15 103.7 9.9 82 452-562 26-109 (111)
208 TIGR02658 TTQ_MADH_Hv methylam 99.1 3.4E-08 7.4E-13 110.6 27.3 233 601-873 47-338 (352)
209 PF00085 Thioredoxin: Thioredo 99.1 5.8E-10 1.3E-14 103.6 11.0 87 452-567 16-102 (103)
210 PRK11590 hypothetical protein; 99.1 2.3E-09 5E-14 113.7 16.7 178 79-267 6-203 (211)
211 cd02997 PDI_a_PDIR PDIa family 99.1 4.5E-10 9.7E-15 104.7 9.6 87 452-564 16-103 (104)
212 TIGR01068 thioredoxin thioredo 99.1 6.1E-10 1.3E-14 103.0 10.4 87 453-568 14-100 (101)
213 PTZ00443 Thioredoxin domain-co 99.1 5.6E-10 1.2E-14 117.2 11.2 92 452-572 51-142 (224)
214 cd02962 TMX2 TMX2 family; comp 99.1 5.5E-10 1.2E-14 110.1 9.5 75 452-554 46-126 (152)
215 PF02630 SCO1-SenC: SCO1/SenC; 99.1 8.8E-10 1.9E-14 112.5 11.3 124 426-554 28-173 (174)
216 PF06888 Put_Phosphatase: Puta 99.0 5.2E-09 1.1E-13 110.3 16.8 179 81-276 2-207 (234)
217 TIGR02244 HAD-IG-Ncltidse HAD 99.0 6.4E-09 1.4E-13 115.6 18.2 103 165-268 184-325 (343)
218 cd02984 TRX_PICOT TRX domain, 99.0 1.2E-09 2.6E-14 100.4 9.8 82 453-564 14-95 (97)
219 cd02998 PDI_a_ERp38 PDIa famil 99.0 6.7E-10 1.4E-14 103.7 8.3 86 452-564 17-104 (105)
220 PRK08238 hypothetical protein; 99.0 8.4E-09 1.8E-13 121.1 17.8 98 164-269 71-168 (479)
221 PF09419 PGP_phosphatase: Mito 99.0 3.3E-09 7.1E-14 105.4 12.1 93 166-269 60-167 (168)
222 TIGR01544 HAD-SF-IE haloacid d 99.0 3.2E-08 6.9E-13 106.6 20.4 121 164-285 120-263 (277)
223 PTZ00051 thioredoxin; Provisio 99.0 1.7E-09 3.6E-14 99.7 8.7 80 452-562 17-96 (98)
224 KOG3040 Predicted sugar phosph 99.0 6.1E-10 1.3E-14 109.6 5.9 74 216-289 175-252 (262)
225 cd02959 ERp19 Endoplasmic reti 99.0 7.9E-10 1.7E-14 104.8 6.6 93 449-569 15-113 (117)
226 cd03001 PDI_a_P5 PDIa family, 99.0 2.6E-09 5.6E-14 99.4 9.9 85 453-565 18-102 (103)
227 KOG0852 Alkyl hydroperoxide re 99.0 4E-09 8.7E-14 101.1 11.1 123 424-551 4-139 (196)
228 cd02961 PDI_a_family Protein D 99.0 1.2E-09 2.5E-14 100.9 7.2 86 452-564 14-100 (101)
229 COG1999 Uncharacterized protei 99.0 8.5E-09 1.8E-13 107.8 14.3 134 432-570 49-205 (207)
230 PF02239 Cytochrom_D1: Cytochr 99.0 1.8E-07 3.8E-12 107.4 26.3 203 612-877 5-213 (369)
231 PF06977 SdiA-regulated: SdiA- 99.0 2.3E-07 4.9E-12 99.2 25.3 215 657-918 22-247 (248)
232 TIGR01295 PedC_BrcD bacterioci 98.9 7.5E-09 1.6E-13 98.8 11.6 96 452-565 22-120 (122)
233 COG4229 Predicted enolase-phos 98.9 2.4E-08 5.2E-13 96.3 14.7 185 78-267 3-205 (229)
234 cd02957 Phd_like Phosducin (Ph 98.9 2.1E-09 4.6E-14 101.7 7.3 72 453-555 24-95 (113)
235 PRK10530 pyridoxal phosphate ( 98.9 1.6E-08 3.4E-13 112.2 15.0 127 166-297 138-269 (272)
236 cd02975 PfPDO_like_N Pyrococcu 98.9 5.8E-09 1.3E-13 98.4 9.5 89 453-570 22-111 (113)
237 PF12689 Acid_PPase: Acid Phos 98.9 3.8E-09 8.1E-14 105.5 8.6 108 164-276 44-161 (169)
238 TIGR03118 PEPCTERM_chp_1 conse 98.9 1.2E-06 2.6E-11 92.7 27.4 237 595-874 17-288 (336)
239 TIGR03606 non_repeat_PQQ dehyd 98.9 1.2E-06 2.6E-11 101.3 30.1 180 594-794 23-250 (454)
240 PTZ00445 p36-lilke protein; Pr 98.9 7.2E-09 1.6E-13 104.7 10.5 102 165-267 75-206 (219)
241 KOG1651 Glutathione peroxidase 98.9 1.1E-08 2.4E-13 98.0 11.0 141 427-570 11-170 (171)
242 TIGR03118 PEPCTERM_chp_1 conse 98.9 5.5E-07 1.2E-11 95.2 23.9 230 654-931 20-288 (336)
243 cd02989 Phd_like_TxnDC9 Phosdu 98.9 7.3E-09 1.6E-13 97.7 8.8 74 452-555 21-94 (113)
244 cd02995 PDI_a_PDI_a'_C PDIa fa 98.8 9.3E-09 2E-13 95.7 8.7 86 452-565 17-104 (104)
245 PF03022 MRJP: Major royal jel 98.8 4.7E-07 1E-11 100.1 23.1 218 658-910 2-254 (287)
246 KOG2792 Putative cytochrome C 98.8 3.8E-08 8.3E-13 100.7 13.1 136 432-572 121-278 (280)
247 PRK01158 phosphoglycolate phos 98.8 7.3E-09 1.6E-13 111.8 8.0 106 184-296 118-226 (230)
248 PF03022 MRJP: Major royal jel 98.8 8E-07 1.7E-11 98.3 23.4 209 603-855 3-254 (287)
249 cd02987 Phd_like_Phd Phosducin 98.8 2E-08 4.3E-13 102.2 9.9 72 453-555 83-154 (175)
250 cd02947 TRX_family TRX family; 98.8 2.9E-08 6.2E-13 89.7 9.8 82 454-565 11-92 (93)
251 TIGR00411 redox_disulf_1 small 98.8 3.8E-08 8.1E-13 87.3 9.4 80 456-568 2-81 (82)
252 cd02952 TRP14_like Human TRX-r 98.8 2.2E-08 4.7E-13 94.1 8.0 78 451-549 19-104 (119)
253 PRK00293 dipZ thiol:disulfide 98.8 1.9E-08 4.1E-13 121.6 9.6 94 450-568 471-569 (571)
254 KOG0908 Thioredoxin-like prote 98.7 2.2E-08 4.9E-13 101.6 8.3 91 450-571 18-108 (288)
255 KOG1446 Histone H3 (Lys4) meth 98.7 4E-05 8.7E-10 81.2 32.5 252 601-931 15-271 (311)
256 PTZ00102 disulphide isomerase; 98.7 3.2E-08 7E-13 119.1 11.2 104 440-570 362-466 (477)
257 PRK05137 tolB translocation pr 98.7 2.5E-05 5.3E-10 92.8 35.5 218 623-923 182-414 (435)
258 PF08645 PNK3P: Polynucleotide 98.7 1.8E-08 3.8E-13 101.0 7.0 93 167-262 31-152 (159)
259 cd02955 SSP411 TRX domain, SSP 98.7 1E-07 2.2E-12 90.7 11.3 102 449-570 11-120 (124)
260 KOG1520 Predicted alkaloid syn 98.7 3.8E-07 8.3E-12 100.0 17.0 148 715-909 114-282 (376)
261 cd02992 PDI_a_QSOX PDIa family 98.7 4.6E-08 1E-12 92.5 8.5 69 453-546 19-89 (114)
262 TIGR00424 APS_reduc 5'-adenyly 98.7 5.4E-08 1.2E-12 112.4 10.4 90 451-567 369-461 (463)
263 TIGR01533 lipo_e_P4 5'-nucleot 98.7 2.6E-07 5.6E-12 99.8 14.8 86 165-257 118-206 (266)
264 TIGR01487 SPP-like sucrose-pho 98.7 1.8E-07 3.9E-12 99.7 13.5 101 185-291 111-211 (215)
265 PRK02888 nitrous-oxide reducta 98.7 2E-06 4.3E-11 101.0 22.9 260 612-908 141-448 (635)
266 TIGR01482 SPP-subfamily Sucros 98.7 4.4E-08 9.6E-13 105.3 8.7 110 183-296 109-222 (225)
267 PLN02309 5'-adenylylsulfate re 98.7 8.9E-08 1.9E-12 110.7 10.9 90 452-568 364-456 (457)
268 PF12710 HAD: haloacid dehalog 98.6 1.1E-07 2.4E-12 99.3 10.3 85 168-256 92-192 (192)
269 PRK04922 tolB translocation pr 98.6 4.9E-05 1.1E-09 90.1 33.6 218 623-923 184-413 (433)
270 COG3204 Uncharacterized protei 98.6 1.1E-05 2.3E-10 85.2 23.6 221 598-865 83-311 (316)
271 cd02988 Phd_like_VIAF Phosduci 98.6 1.4E-07 3.1E-12 97.3 9.7 71 452-555 101-171 (192)
272 KOG3120 Predicted haloacid deh 98.6 4.3E-07 9.2E-12 91.0 12.4 194 79-289 13-233 (256)
273 PF07995 GSDH: Glucose / Sorbo 98.6 5.8E-06 1.3E-10 93.9 23.6 231 656-923 1-291 (331)
274 TIGR00412 redox_disulf_2 small 98.6 1.6E-07 3.4E-12 81.7 8.3 73 457-565 2-75 (76)
275 COG2133 Glucose/sorbosone dehy 98.6 1.2E-05 2.6E-10 90.7 25.4 294 595-922 61-398 (399)
276 COG1778 Low specificity phosph 98.6 4.5E-08 9.7E-13 92.9 4.5 82 173-264 43-124 (170)
277 PRK04792 tolB translocation pr 98.6 3.9E-05 8.4E-10 91.2 30.5 217 624-923 199-427 (448)
278 PRK02889 tolB translocation pr 98.6 0.00016 3.4E-09 85.7 35.2 226 615-923 167-405 (427)
279 cd00200 WD40 WD40 domain, foun 98.6 5.4E-05 1.2E-09 82.7 29.5 231 605-919 56-289 (289)
280 KOG0279 G protein beta subunit 98.6 0.0001 2.2E-09 76.7 28.6 245 605-934 20-274 (315)
281 PRK00178 tolB translocation pr 98.6 0.00016 3.5E-09 85.9 35.4 217 624-923 180-408 (430)
282 TIGR02187 GlrX_arch Glutaredox 98.6 3.5E-07 7.5E-12 97.2 11.2 94 450-571 16-113 (215)
283 PRK04043 tolB translocation pr 98.6 7.9E-05 1.7E-09 87.3 31.8 226 612-923 155-402 (419)
284 TIGR03606 non_repeat_PQQ dehyd 98.6 3.3E-05 7.2E-10 89.5 27.9 174 656-865 29-261 (454)
285 TIGR01130 ER_PDI_fam protein d 98.5 2E-07 4.3E-12 111.9 10.1 90 452-569 17-109 (462)
286 PRK15126 thiamin pyrimidine py 98.5 8.2E-07 1.8E-11 98.4 14.1 74 220-297 185-260 (272)
287 TIGR01545 YfhB_g-proteo haloac 98.5 1.8E-06 3.9E-11 91.1 15.9 100 165-267 94-202 (210)
288 PRK03629 tolB translocation pr 98.5 0.00018 3.9E-09 85.1 34.6 218 623-923 179-408 (429)
289 cd02982 PDI_b'_family Protein 98.5 2.2E-07 4.8E-12 86.3 7.6 88 453-568 12-102 (103)
290 PRK10513 sugar phosphate phosp 98.5 1.2E-06 2.5E-11 97.1 14.6 73 221-297 194-266 (270)
291 PTZ00062 glutaredoxin; Provisi 98.5 3.1E-07 6.6E-12 95.0 9.1 75 454-567 18-92 (204)
292 TIGR01684 viral_ppase viral ph 98.5 3E-07 6.5E-12 98.4 9.2 61 167-228 148-208 (301)
293 KOG0854 Alkyl hydroperoxide re 98.5 1E-06 2.2E-11 84.4 11.4 126 423-552 5-147 (224)
294 PTZ00102 disulphide isomerase; 98.5 4.8E-07 1E-11 109.0 10.4 89 452-569 48-138 (477)
295 cd00200 WD40 WD40 domain, foun 98.5 0.0002 4.3E-09 78.2 30.5 235 603-923 12-251 (289)
296 COG3204 Uncharacterized protei 98.5 4.9E-05 1.1E-09 80.4 23.7 221 658-920 87-311 (316)
297 PRK01742 tolB translocation pr 98.4 0.00033 7.1E-09 83.0 33.3 219 623-931 184-412 (429)
298 TIGR02800 propeller_TolB tol-p 98.4 0.00016 3.5E-09 85.5 30.7 219 622-923 169-399 (417)
299 KOG0291 WD40-repeat-containing 98.4 0.00039 8.4E-09 81.3 31.5 206 656-932 350-560 (893)
300 TIGR01525 ATPase-IB_hvy heavy 98.4 8.1E-07 1.8E-11 108.3 10.1 117 163-297 382-501 (556)
301 PRK10976 putative hydrolase; P 98.4 2.6E-06 5.6E-11 94.1 13.2 73 221-296 188-261 (266)
302 cd02958 UAS UAS family; UAS is 98.4 2E-06 4.3E-11 81.5 10.6 96 449-570 13-112 (114)
303 TIGR01512 ATPase-IB2_Cd heavy 98.4 8.6E-07 1.9E-11 107.4 9.6 119 163-298 360-481 (536)
304 PHA02125 thioredoxin-like prot 98.4 1.6E-06 3.4E-11 75.2 8.5 61 457-555 2-62 (75)
305 KOG4499 Ca2+-binding protein R 98.4 7.2E-05 1.6E-09 76.0 21.0 226 604-873 18-248 (310)
306 TIGR02251 HIF-SF_euk Dullard-l 98.3 4.6E-07 1E-11 91.4 5.2 106 165-274 42-147 (162)
307 PF03088 Str_synth: Strictosid 98.3 2.7E-06 5.8E-11 75.2 8.8 69 841-923 2-89 (89)
308 PRK04792 tolB translocation pr 98.3 0.00012 2.6E-09 87.1 25.8 200 606-874 223-433 (448)
309 KOG0291 WD40-repeat-containing 98.3 0.00038 8.2E-09 81.4 27.7 254 599-923 349-614 (893)
310 PRK05137 tolB translocation pr 98.3 0.00018 3.9E-09 85.5 26.6 201 605-874 206-420 (435)
311 PF05096 Glu_cyclase_2: Glutam 98.3 0.00022 4.7E-09 75.9 23.8 208 658-921 46-261 (264)
312 PRK02888 nitrous-oxide reducta 98.3 0.00021 4.6E-09 84.4 26.0 280 615-922 68-405 (635)
313 cd03026 AhpF_NTD_C TRX-GRX-lik 98.3 3.3E-06 7.1E-11 75.6 8.7 71 449-551 8-78 (89)
314 PRK01029 tolB translocation pr 98.3 0.0025 5.4E-08 75.2 35.5 220 623-923 165-405 (428)
315 KOG0190 Protein disulfide isom 98.3 1.7E-06 3.8E-11 99.2 8.0 87 453-567 42-130 (493)
316 PF00255 GSHPx: Glutathione pe 98.2 3.1E-06 6.6E-11 77.9 7.7 82 437-520 6-90 (108)
317 PRK04922 tolB translocation pr 98.2 0.00021 4.5E-09 84.8 25.4 200 606-874 209-419 (433)
318 cd02973 TRX_GRX_like Thioredox 98.2 3.4E-06 7.4E-11 71.4 7.4 63 456-550 2-64 (67)
319 COG4359 Uncharacterized conser 98.2 1.4E-05 3E-10 78.0 11.9 88 165-259 73-179 (220)
320 PF03088 Str_synth: Strictosid 98.2 9.5E-06 2.1E-10 71.7 9.7 71 719-804 1-88 (89)
321 TIGR02187 GlrX_arch Glutaredox 98.2 4.4E-06 9.5E-11 88.8 8.9 85 450-567 130-214 (215)
322 KOG0318 WD40 repeat stress pro 98.2 0.001 2.3E-08 74.9 27.4 258 599-923 189-475 (603)
323 PLN02887 hydrolase family prot 98.2 1.6E-05 3.4E-10 95.5 14.5 72 221-296 505-576 (580)
324 KOG0286 G-protein beta subunit 98.2 0.002 4.3E-08 67.8 27.5 259 594-918 49-342 (343)
325 PF01436 NHL: NHL repeat; Int 98.2 2.3E-06 4.9E-11 58.2 4.1 28 891-918 1-28 (28)
326 cd02960 AGR Anterior Gradient 98.2 3.9E-06 8.4E-11 79.8 7.1 79 449-556 19-100 (130)
327 TIGR00099 Cof-subfamily Cof su 98.2 2.3E-05 4.9E-10 86.0 14.3 68 220-291 185-252 (256)
328 COG0561 Cof Predicted hydrolas 98.2 5E-06 1.1E-10 91.7 9.0 75 219-297 185-259 (264)
329 PRK02889 tolB translocation pr 98.2 0.00058 1.3E-08 80.8 26.8 201 605-874 200-411 (427)
330 PF13360 PQQ_2: PQQ-like domai 98.2 0.002 4.4E-08 69.5 29.1 229 622-923 2-232 (238)
331 PRK03629 tolB translocation pr 98.2 0.00056 1.2E-08 80.9 26.4 202 605-875 203-415 (429)
332 TIGR01459 HAD-SF-IIA-hyp4 HAD- 98.1 5E-06 1.1E-10 90.3 8.1 89 165-259 24-115 (242)
333 PHA03398 viral phosphatase sup 98.1 1.1E-05 2.4E-10 86.7 10.3 85 167-252 150-266 (303)
334 PRK00192 mannosyl-3-phosphogly 98.1 3.2E-05 6.9E-10 85.7 14.5 83 175-263 142-231 (273)
335 COG2077 Tpx Peroxiredoxin [Pos 98.1 2.1E-05 4.6E-10 74.5 10.8 117 424-551 18-146 (158)
336 COG4087 Soluble P-type ATPase 98.1 1.4E-05 3.1E-10 73.5 9.3 120 164-297 29-148 (152)
337 TIGR02471 sucr_syn_bact_C sucr 98.1 3.9E-06 8.6E-11 90.8 6.6 109 181-296 112-232 (236)
338 TIGR01511 ATPase-IB1_Cu copper 98.1 7.6E-06 1.6E-10 99.6 9.7 117 163-298 403-521 (562)
339 PF08282 Hydrolase_3: haloacid 98.1 3.2E-05 7E-10 84.3 13.9 67 221-291 184-250 (254)
340 PF01436 NHL: NHL repeat; Int 98.1 5.3E-06 1.1E-10 56.5 4.7 28 836-863 1-28 (28)
341 TIGR01130 ER_PDI_fam protein d 98.1 7.5E-06 1.6E-10 98.3 9.4 87 452-567 363-452 (462)
342 KOG4499 Ca2+-binding protein R 98.1 0.0012 2.5E-08 67.5 23.0 88 836-931 157-250 (310)
343 TIGR01522 ATPase-IIA2_Ca golgi 98.1 1.1E-05 2.4E-10 103.5 10.7 127 164-296 527-671 (884)
344 PRK00178 tolB translocation pr 98.1 0.0012 2.6E-08 78.4 26.9 201 605-874 203-414 (430)
345 TIGR01485 SPP_plant-cyano sucr 98.1 3.7E-05 8E-10 83.9 12.8 92 179-275 117-217 (249)
346 TIGR03032 conserved hypothetic 98.0 0.0021 4.5E-08 69.4 25.0 215 614-875 19-240 (335)
347 PF13344 Hydrolase_6: Haloacid 98.0 2.4E-05 5.2E-10 72.0 9.2 84 165-260 14-100 (101)
348 PRK10671 copA copper exporting 98.0 1.3E-05 2.8E-10 102.5 10.2 117 164-297 649-766 (834)
349 KOG0266 WD40 repeat-containing 98.0 0.0017 3.8E-08 77.3 27.6 234 606-923 165-411 (456)
350 COG2133 Glucose/sorbosone dehy 98.0 0.00036 7.9E-09 79.0 20.2 231 595-867 125-398 (399)
351 KOG0279 G protein beta subunit 98.0 0.0036 7.7E-08 65.6 25.3 245 599-920 62-312 (315)
352 TIGR02463 MPGP_rel mannosyl-3- 98.0 0.00013 2.7E-09 78.2 15.7 71 188-263 146-219 (221)
353 KOG1215 Low-density lipoprotei 98.0 0.0003 6.6E-09 91.0 21.6 200 601-865 437-638 (877)
354 PF13728 TraF: F plasmid trans 98.0 2.3E-05 5E-10 82.5 9.2 96 449-564 116-213 (215)
355 smart00594 UAS UAS domain. 98.0 2.8E-05 6E-10 74.5 8.8 90 450-565 24-121 (122)
356 TIGR02800 propeller_TolB tol-p 98.0 0.0036 7.9E-08 74.0 28.5 188 668-923 156-356 (417)
357 PF00837 T4_deiodinase: Iodoth 98.0 0.00012 2.6E-09 76.1 13.5 140 422-567 71-235 (237)
358 PRK04043 tolB translocation pr 97.9 0.0033 7.3E-08 73.7 26.8 198 606-874 193-408 (419)
359 TIGR02739 TraF type-F conjugat 97.9 4.5E-05 9.7E-10 81.6 9.7 104 449-572 146-251 (256)
360 PTZ00421 coronin; Provisional 97.9 0.015 3.3E-07 69.5 32.1 198 658-923 77-292 (493)
361 KOG1446 Histone H3 (Lys4) meth 97.9 0.011 2.4E-07 63.2 27.0 205 658-931 16-226 (311)
362 PLN00181 protein SPA1-RELATED; 97.9 0.01 2.2E-07 76.2 32.7 243 603-923 486-740 (793)
363 PLN00181 protein SPA1-RELATED; 97.9 0.0095 2.1E-07 76.6 31.9 252 603-920 535-792 (793)
364 KOG0315 G-protein beta subunit 97.9 0.0092 2E-07 61.6 24.7 245 602-923 42-290 (311)
365 TIGR01675 plant-AP plant acid 97.9 0.00015 3.2E-09 76.3 12.5 96 164-265 119-221 (229)
366 PRK01742 tolB translocation pr 97.9 0.003 6.5E-08 74.9 25.2 197 604-874 207-412 (429)
367 PF05761 5_nucleotid: 5' nucle 97.8 0.00016 3.5E-09 83.9 13.8 103 167-269 185-327 (448)
368 KOG0266 WD40 repeat-containing 97.8 0.0023 4.9E-08 76.4 23.9 195 660-923 163-366 (456)
369 COG4996 Predicted phosphatase 97.8 2.9E-05 6.3E-10 71.2 5.9 81 164-249 40-126 (164)
370 COG0526 TrxA Thiol-disulfide i 97.8 5E-05 1.1E-09 71.5 8.0 67 449-542 28-96 (127)
371 TIGR00685 T6PP trehalose-phosp 97.8 7.5E-05 1.6E-09 81.2 10.2 79 212-297 152-241 (244)
372 KOG0912 Thiol-disulfide isomer 97.8 2.8E-05 6.2E-10 81.6 6.2 91 453-570 13-107 (375)
373 KOG4277 Uncharacterized conser 97.8 3.4E-05 7.3E-10 80.3 6.6 88 453-568 43-131 (468)
374 COG4232 Thiol:disulfide interc 97.8 2.5E-05 5.4E-10 90.7 5.8 97 449-568 470-567 (569)
375 PF13360 PQQ_2: PQQ-like domai 97.8 0.016 3.5E-07 62.5 27.6 197 612-870 36-234 (238)
376 KOG0263 Transcription initiati 97.8 0.0021 4.6E-08 76.1 21.3 193 659-923 454-651 (707)
377 PF06433 Me-amine-dh_H: Methyl 97.8 0.017 3.6E-07 63.9 26.8 113 612-751 2-131 (342)
378 PRK13703 conjugal pilus assemb 97.8 0.00011 2.4E-09 78.1 9.7 104 449-572 139-244 (248)
379 KOG0318 WD40 repeat stress pro 97.8 0.016 3.5E-07 65.7 26.8 242 600-924 320-563 (603)
380 TIGR01484 HAD-SF-IIB HAD-super 97.8 0.00019 4E-09 75.8 11.5 44 219-262 159-202 (204)
381 cd03007 PDI_a_ERp29_N PDIa fam 97.8 8.8E-05 1.9E-09 69.3 7.8 91 452-567 17-114 (116)
382 KOG0190 Protein disulfide isom 97.7 4.5E-05 9.9E-10 87.8 6.1 86 452-566 383-470 (493)
383 smart00775 LNS2 LNS2 domain. T 97.7 0.00032 6.9E-09 70.3 11.5 94 165-261 27-141 (157)
384 KOG0191 Thioredoxin/protein di 97.7 0.00011 2.4E-09 85.5 9.4 90 452-570 46-135 (383)
385 PF13449 Phytase-like: Esteras 97.7 0.0064 1.4E-07 69.1 23.3 189 604-803 23-251 (326)
386 PF14595 Thioredoxin_9: Thiore 97.7 4.6E-05 9.9E-10 73.3 4.8 80 449-554 37-116 (129)
387 PRK01029 tolB translocation pr 97.6 0.022 4.7E-07 67.3 27.8 201 607-874 191-411 (428)
388 PRK03669 mannosyl-3-phosphogly 97.6 8E-05 1.7E-09 82.4 6.7 69 218-289 182-258 (271)
389 KOG0293 WD40 repeat-containing 97.6 0.0094 2E-07 65.5 21.9 154 659-867 272-426 (519)
390 PTZ00421 coronin; Provisional 97.6 0.049 1.1E-06 65.2 30.6 206 603-873 78-297 (493)
391 KOG2630 Enolase-phosphatase E- 97.6 0.00098 2.1E-08 68.0 13.6 105 163-268 121-226 (254)
392 PRK11509 hydrogenase-1 operon 97.6 0.0005 1.1E-08 65.6 10.9 90 455-572 36-127 (132)
393 KOG0272 U4/U6 small nuclear ri 97.6 0.0045 9.7E-08 68.3 19.4 238 603-923 177-420 (459)
394 KOG0282 mRNA splicing factor [ 97.6 0.0015 3.3E-08 73.0 15.9 235 609-923 223-464 (503)
395 KOG0272 U4/U6 small nuclear ri 97.6 0.0017 3.6E-08 71.6 15.8 193 601-863 262-457 (459)
396 TIGR01680 Veg_Stor_Prot vegeta 97.6 0.00068 1.5E-08 72.4 12.7 98 164-266 144-249 (275)
397 PF05096 Glu_cyclase_2: Glutam 97.6 0.0054 1.2E-07 65.5 19.2 168 601-802 90-260 (264)
398 KOG0315 G-protein beta subunit 97.6 0.028 6.2E-07 58.1 23.2 233 614-923 11-247 (311)
399 PRK11033 zntA zinc/cadmium/mer 97.6 0.00029 6.3E-09 88.5 11.2 115 163-297 566-682 (741)
400 PF07433 DUF1513: Protein of u 97.6 0.063 1.4E-06 58.8 27.4 255 604-923 8-287 (305)
401 PF13899 Thioredoxin_7: Thiore 97.6 8.5E-05 1.8E-09 65.7 4.5 43 450-493 14-59 (82)
402 TIGR02461 osmo_MPG_phos mannos 97.6 0.00089 1.9E-08 71.6 13.2 40 223-262 181-222 (225)
403 PF06941 NT5C: 5' nucleotidase 97.6 0.00028 6E-09 73.6 9.1 168 80-289 2-181 (191)
404 COG2217 ZntA Cation transport 97.6 0.00014 3.1E-09 88.9 7.9 117 163-296 535-652 (713)
405 cd01659 TRX_superfamily Thiore 97.5 0.00021 4.5E-09 58.9 6.6 63 457-545 1-63 (69)
406 PRK10187 trehalose-6-phosphate 97.5 0.00065 1.4E-08 74.6 12.0 69 221-298 172-243 (266)
407 PF03767 Acid_phosphat_B: HAD 97.5 6.7E-05 1.4E-09 80.1 4.0 87 165-257 115-210 (229)
408 PTZ00420 coronin; Provisional 97.5 0.048 1E-06 65.9 28.5 206 658-923 76-295 (568)
409 KOG0296 Angio-associated migra 97.5 0.1 2.2E-06 57.0 27.3 204 603-865 67-272 (399)
410 COG3823 Glutamine cyclotransfe 97.5 0.014 3.1E-07 58.8 19.4 203 658-919 47-257 (262)
411 TIGR01486 HAD-SF-IIB-MPGP mann 97.5 0.002 4.3E-08 70.7 14.8 74 219-295 172-252 (256)
412 KOG1215 Low-density lipoprotei 97.4 0.011 2.4E-07 76.6 23.7 201 658-923 438-641 (877)
413 TIGR03300 assembly_YfgL outer 97.4 0.11 2.3E-06 60.6 29.2 237 606-923 61-299 (377)
414 PF07433 DUF1513: Protein of u 97.4 0.023 5E-07 62.1 21.4 210 606-868 56-287 (305)
415 KOG0772 Uncharacterized conser 97.4 0.0091 2E-07 67.4 18.4 225 599-866 166-394 (641)
416 KOG0271 Notchless-like WD40 re 97.4 0.025 5.5E-07 61.7 21.1 255 605-923 120-441 (480)
417 KOG0296 Angio-associated migra 97.4 0.14 2.9E-06 56.1 26.5 262 604-921 110-398 (399)
418 PRK11138 outer membrane biogen 97.4 0.1 2.3E-06 61.1 28.9 241 612-923 69-314 (394)
419 cd02991 UAS_ETEA UAS family, E 97.4 0.001 2.2E-08 62.8 9.6 94 449-571 13-115 (116)
420 PTZ00420 coronin; Provisional 97.4 0.1 2.2E-06 63.1 28.5 216 603-874 77-301 (568)
421 PF02333 Phytase: Phytase; In 97.3 0.077 1.7E-06 60.1 25.3 197 613-867 68-291 (381)
422 KOG0285 Pleiotropic regulator 97.3 0.069 1.5E-06 58.0 23.3 269 595-923 146-441 (460)
423 COG3700 AphA Acid phosphatase 97.3 0.00075 1.6E-08 65.6 7.4 96 165-268 114-213 (237)
424 TIGR01116 ATPase-IIA1_Ca sarco 97.3 0.00089 1.9E-08 86.4 10.6 121 164-289 536-678 (917)
425 COG2143 Thioredoxin-related pr 97.2 0.004 8.8E-08 59.5 11.6 109 451-571 40-151 (182)
426 KOG0295 WD40 repeat-containing 97.2 0.18 4E-06 55.0 25.2 320 532-923 34-366 (406)
427 PF13449 Phytase-like: Esteras 97.2 0.06 1.3E-06 61.2 23.3 133 717-866 86-251 (326)
428 PF11019 DUF2608: Protein of u 97.2 0.0088 1.9E-07 64.8 15.1 105 165-269 81-212 (252)
429 PF03190 Thioredox_DsbH: Prote 97.1 0.0014 3.1E-08 64.8 8.0 101 449-572 33-144 (163)
430 KOG2961 Predicted hydrolase (H 97.1 0.0046 9.9E-08 58.7 10.9 79 182-269 80-170 (190)
431 KOG0316 Conserved WD40 repeat- 97.1 0.065 1.4E-06 55.1 19.7 229 612-919 28-266 (307)
432 cd03023 DsbA_Com1_like DsbA fa 97.1 0.0022 4.8E-08 64.0 9.2 41 452-492 4-44 (154)
433 COG2503 Predicted secreted aci 97.1 0.003 6.4E-08 65.1 9.7 88 165-259 122-213 (274)
434 TIGR03300 assembly_YfgL outer 97.1 0.62 1.3E-05 54.2 31.0 244 607-931 102-347 (377)
435 KOG0306 WD40-repeat-containing 97.1 0.098 2.1E-06 62.0 23.0 264 603-923 376-666 (888)
436 PRK10877 protein disulfide iso 97.1 0.0028 6.1E-08 67.8 10.2 107 452-567 106-229 (232)
437 KOG0316 Conserved WD40 repeat- 97.1 0.071 1.5E-06 54.8 19.1 192 660-923 21-215 (307)
438 PF14269 Arylsulfotran_2: Aryl 97.1 0.41 8.9E-06 53.4 27.4 137 717-873 145-296 (299)
439 KOG2055 WD40 repeat protein [G 97.0 0.16 3.5E-06 57.0 23.3 158 605-805 218-376 (514)
440 PF06110 DUF953: Eukaryotic pr 97.0 0.0019 4.2E-08 60.6 7.4 76 451-547 17-101 (119)
441 KOG1731 FAD-dependent sulfhydr 97.0 0.0004 8.6E-09 79.8 2.7 95 454-573 58-157 (606)
442 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.0 1.6 3.4E-05 53.1 37.3 179 612-810 69-286 (527)
443 PF13192 Thioredoxin_3: Thiore 96.9 0.0027 5.9E-08 55.1 7.1 71 460-566 5-76 (76)
444 KOG0268 Sof1-like rRNA process 96.9 0.019 4.2E-07 62.3 14.7 157 718-923 190-347 (433)
445 KOG0292 Vesicle coat complex C 96.9 0.1 2.2E-06 63.0 21.8 263 601-930 10-288 (1202)
446 COG4946 Uncharacterized protei 96.9 0.26 5.6E-06 55.5 23.4 200 612-875 235-440 (668)
447 TIGR01497 kdpB K+-transporting 96.9 0.0039 8.4E-08 76.4 10.6 106 164-285 445-550 (675)
448 PRK14010 potassium-transportin 96.9 0.0049 1.1E-07 75.6 11.4 106 163-284 439-544 (673)
449 TIGR02196 GlrX_YruB Glutaredox 96.9 0.0036 7.8E-08 53.5 7.5 72 457-565 2-73 (74)
450 PF05787 DUF839: Bacterial pro 96.9 0.012 2.6E-07 70.5 14.4 122 597-734 346-520 (524)
451 PF05935 Arylsulfotrans: Aryls 96.9 0.76 1.6E-05 55.1 29.6 260 612-909 113-434 (477)
452 KOG0310 Conserved WD40 repeat- 96.9 0.17 3.7E-06 57.3 21.9 227 605-918 73-306 (487)
453 PRK11138 outer membrane biogen 96.9 0.46 9.9E-06 55.7 27.4 233 612-920 160-393 (394)
454 PRK01122 potassium-transportin 96.8 0.0047 1E-07 75.8 10.7 105 164-284 444-548 (679)
455 KOG2048 WD40 repeat protein [G 96.8 0.68 1.5E-05 54.7 27.1 245 605-923 30-277 (691)
456 PLN02645 phosphoglycolate phos 96.8 0.0067 1.4E-07 68.4 11.1 90 165-264 44-136 (311)
457 KOG0772 Uncharacterized conser 96.8 0.093 2E-06 59.6 19.4 172 605-803 219-394 (641)
458 KOG0263 Transcription initiati 96.8 0.056 1.2E-06 64.5 18.7 188 605-866 456-649 (707)
459 PF05787 DUF839: Bacterial pro 96.8 0.013 2.8E-07 70.2 13.8 123 654-790 347-519 (524)
460 KOG1273 WD40 repeat protein [G 96.8 0.43 9.3E-06 51.3 22.9 205 595-865 16-225 (405)
461 KOG0207 Cation transport ATPas 96.8 0.015 3.2E-07 71.0 13.8 85 163-259 721-805 (951)
462 PRK11657 dsbG disulfide isomer 96.8 0.0065 1.4E-07 65.9 10.0 111 452-566 116-249 (251)
463 KOG1273 WD40 repeat protein [G 96.8 0.14 3E-06 54.8 19.2 199 660-922 27-227 (405)
464 KOG0293 WD40 repeat-containing 96.8 0.072 1.6E-06 58.9 17.5 154 719-923 273-427 (519)
465 TIGR01517 ATPase-IIB_Ca plasma 96.7 0.0055 1.2E-07 79.5 10.7 122 164-289 578-717 (941)
466 PRK14502 bifunctional mannosyl 96.7 0.024 5.2E-07 68.4 15.0 42 221-262 611-654 (694)
467 KOG0282 mRNA splicing factor [ 96.7 0.045 9.7E-07 61.7 15.8 199 606-867 264-463 (503)
468 cd03020 DsbA_DsbC_DsbG DsbA fa 96.7 0.0072 1.6E-07 63.3 9.3 103 452-564 76-196 (197)
469 TIGR02250 FCP1_euk FCP1-like p 96.7 0.0039 8.5E-08 62.3 6.8 80 165-251 58-139 (156)
470 PRK10517 magnesium-transportin 96.7 0.0054 1.2E-07 78.7 9.7 115 164-285 549-679 (902)
471 KOG0191 Thioredoxin/protein di 96.7 0.0075 1.6E-07 70.2 10.1 90 453-569 162-252 (383)
472 KOG0310 Conserved WD40 repeat- 96.6 0.27 5.8E-06 55.8 21.3 196 659-923 71-270 (487)
473 KOG0289 mRNA splicing factor [ 96.6 0.74 1.6E-05 51.6 24.2 194 659-917 306-501 (506)
474 TIGR01523 ATPase-IID_K-Na pota 96.6 0.0082 1.8E-07 78.2 10.9 124 163-289 644-794 (1053)
475 KOG0289 mRNA splicing factor [ 96.6 1.5 3.2E-05 49.4 26.1 155 719-923 307-464 (506)
476 TIGR02200 GlrX_actino Glutared 96.6 0.0023 5E-08 55.5 4.0 22 457-478 2-23 (77)
477 TIGR03032 conserved hypothetic 96.6 0.96 2.1E-05 49.5 24.2 178 714-923 47-233 (335)
478 KOG2106 Uncharacterized conser 96.6 1.6 3.6E-05 49.9 26.6 150 601-801 247-396 (626)
479 KOG0285 Pleiotropic regulator 96.6 0.094 2E-06 57.0 16.4 123 656-813 151-276 (460)
480 PLN02382 probable sucrose-phos 96.5 0.012 2.5E-07 68.8 10.7 56 219-276 171-229 (413)
481 KOG0645 WD40 repeat protein [G 96.5 1.3 2.9E-05 46.8 24.1 197 658-920 16-224 (312)
482 TIGR01524 ATPase-IIIB_Mg magne 96.5 0.0091 2E-07 76.6 10.5 115 164-285 514-644 (867)
483 PRK15122 magnesium-transportin 96.5 0.008 1.7E-07 77.3 9.8 119 164-289 549-685 (903)
484 TIGR01647 ATPase-IIIA_H plasma 96.5 0.0068 1.5E-07 76.6 8.9 113 164-284 441-575 (755)
485 KOG1407 WD40 repeat protein [F 96.5 1.1 2.3E-05 47.3 22.7 242 599-923 19-263 (313)
486 KOG1274 WD40 repeat protein [G 96.5 1 2.2E-05 55.1 25.9 193 614-867 67-263 (933)
487 KOG1407 WD40 repeat protein [F 96.4 1.4 3E-05 46.5 23.3 198 658-923 22-221 (313)
488 COG0678 AHP1 Peroxiredoxin [Po 96.4 0.017 3.8E-07 55.0 8.9 123 424-553 3-146 (165)
489 PF05116 S6PP: Sucrose-6F-phos 96.4 0.009 2E-07 64.9 8.3 71 194-268 135-209 (247)
490 KOG1274 WD40 repeat protein [G 96.4 0.61 1.3E-05 56.9 23.8 239 604-921 17-262 (933)
491 KOG0641 WD40 repeat protein [G 96.4 0.84 1.8E-05 46.6 21.1 243 660-922 36-304 (350)
492 PF09695 YtfJ_HI0045: Bacteria 96.4 0.053 1.2E-06 52.8 12.1 115 449-567 33-156 (160)
493 PRK14501 putative bifunctional 96.4 0.013 2.7E-07 74.2 10.4 69 221-298 655-723 (726)
494 cd03019 DsbA_DsbA DsbA family, 96.3 0.028 6.1E-07 57.7 10.7 41 452-493 14-54 (178)
495 PRK10954 periplasmic protein d 96.3 0.031 6.6E-07 59.0 11.0 44 450-494 34-80 (207)
496 COG0474 MgtA Cation transport 96.3 0.018 4E-07 74.1 11.0 118 164-284 546-680 (917)
497 PRK13616 lipoprotein LpqB; Pro 96.2 3.4 7.3E-05 50.7 29.7 169 657-871 350-532 (591)
498 COG5276 Uncharacterized conser 96.2 1.2 2.5E-05 47.9 21.7 225 612-917 96-325 (370)
499 cd00216 PQQ_DH Dehydrogenases 96.2 3.1 6.7E-05 50.2 29.1 132 612-754 110-272 (488)
500 KOG0286 G-protein beta subunit 96.2 0.22 4.8E-06 53.0 16.2 152 602-800 188-342 (343)
No 1
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=100.00 E-value=2.5e-141 Score=1340.81 Aligned_cols=1052 Identities=78% Similarity=1.205 Sum_probs=931.0
Q ss_pred cccccCCCCCCCccccccccccCCCCCCCCCCCCCcccccccCcccc-ccccc--cccccccccc-ccccccCCCCCCCC
Q 001380 2 IAMKLLSSPPASSLSLQTKLFFFSPNTKQLRPSSVSSALFQCGAKRT-VLGRR--MVVKACVTKV-EETDVNVSSESKWG 77 (1089)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~ 77 (1089)
||++|+++|+++++++ +++.++.++ +..+++++.+.+.+.. .+.++ +..+.+.... .+....... ..++
T Consensus 1 ~~~~~~~~~~~~~~~~---~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 73 (1057)
T PLN02919 1 MALKLASPPSLFSWPR---RHCAGDFPP---ALAFASSIRGRRSRSGVWLGKNGGARSKSCAKVEEKSRGAEIAT-EEWG 73 (1057)
T ss_pred CCccccCCcccccCcc---cCccCCCCc---ccccchhhcCchhhccceeccccccccceeeehhhhCCCCccCC-CcCC
Confidence 8999999999988884 444222222 3444445444333322 22222 1112221111 222233333 5678
Q ss_pred CceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHH
Q 001380 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIYLDK 157 (1089)
Q Consensus 78 ~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (1089)
++++|+|||||||+|+...+.+++.++++++|++++.+++..+++.+...++..+....++.....++..+++.+.+.+.
T Consensus 74 ~ikaVIFDlDGTLiDS~~~~~~a~~~~~~~~G~~it~e~~~~~~G~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 153 (1057)
T PLN02919 74 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFVPFMGTGEANFLGGVASVKGVKGFDPDAAKKRFFEIYLEK 153 (1057)
T ss_pred CCCEEEECCCCCeEeChHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999998888888899998888887776665554445555566666666655
Q ss_pred hcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCC
Q 001380 158 YAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNV 237 (1089)
Q Consensus 158 ~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv 237 (1089)
+.......++||+.++|++|+++|++++|+||.....++..++++++...+||.+++++++...||+|++|.++++++|+
T Consensus 154 ~~~~~~~~~~pG~~elL~~Lk~~G~~l~IvSn~~~~~~~~~L~~~gl~~~~Fd~iv~~~~~~~~KP~Pe~~~~a~~~lgv 233 (1057)
T PLN02919 154 YAKPNSGIGFPGALELITQCKNKGLKVAVASSADRIKVDANLAAAGLPLSMFDAIVSADAFENLKPAPDIFLAAAKILGV 233 (1057)
T ss_pred hhhcccCccCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHcCCChhHCCEEEECcccccCCCCHHHHHHHHHHcCc
Confidence 54332335799999999999999999999999999999999999999436899999999999999999999999999999
Q ss_pred CCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccCCHHHHHhccCCCCcchhhhhhhhhcccc
Q 001380 238 PTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDILTGGGGSYNEKIQEHELLHAASQ 317 (1089)
Q Consensus 238 ~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~i~~ll~~~~~~~~~~~~~~~~~~~~~~ 317 (1089)
.|++||||||+..|+++|+++||++|+|.++...+++...+|+++++++.++.+.+++....+.+..
T Consensus 234 ~p~e~v~IgDs~~Di~AA~~aGm~~I~v~~~~~~~~L~~~~a~~vi~~l~el~~~~~~~~~~~~~~~------------- 300 (1057)
T PLN02919 234 PTSECVVIEDALAGVQAARAAGMRCIAVTTTLSEEILKDAGPSLIRKDIGNISLSDILTGGSDATPN------------- 300 (1057)
T ss_pred CcccEEEEcCCHHHHHHHHHcCCEEEEECCCCCHHHHhhCCCCEEECChHHCCHHHHHhcCCCCCCC-------------
Confidence 9999999999999999999999999999998888888889999999999999999999888543211
Q ss_pred CchhhccccCCCCcccccCCCCCCCcccCCCcccchhhhhhhhhhhHHHHhhhhccccccccccCHHHHHHhhhcCCCcc
Q 001380 318 NSTALLKEKTDNWSILDTGAADEKGSSTSGLQGSRREILRYGSLGVAFSCLFFAVSNWKAMQYASPKAIWNVLFGVNRPS 397 (1089)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~l~~~~~~~~~~~~~~p~~l~~~~~~~~~p~ 397 (1089)
. .+..|+....+.+. ..+++++||+|+||++||+|++|++++..+|++|+|++|+.+++.|.+...|.
T Consensus 301 -~--------~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (1057)
T PLN02919 301 -V--------TGMDWINTILDTGS---ILGFQGSRRDILRYGSLGIALSCLYFAATNWKAMQYASPKALWNALFGVDDPS 368 (1057)
T ss_pred -c--------cchhhhcccccccc---ccCcccchhhhhhhhhhhhhhhhheeeccchhhhhhcCHHHHHHHHhccCchh
Confidence 1 12233343333333 35999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCChHHHHHHHHHHHHhhccCCCCCCCCCCccccCCCCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHH
Q 001380 398 FEQTEGGSSQSERIQQFVNYISDVENRKTTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEF 477 (1089)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~ 477 (1089)
|+..+... .++.+.+++..++....|+++|+|+..+.|++|+++++.++++||+|||+|||+||++|++++|.|++
T Consensus 369 ~~~~~~~~----~~~~~~~~i~~~~~~~~g~~~p~f~~~~~~~~g~~~~l~~~lkGK~vll~FWAsWC~pC~~e~P~L~~ 444 (1057)
T PLN02919 369 FAQNSGEG----CVQQFVSYISDLESKKTATKVPEFPPKLDWLNTAPLQFRRDLKGKVVILDFWTYCCINCMHVLPDLEF 444 (1057)
T ss_pred hhhccchh----HHHHHHHHHHhhhccccCCcCCCCcccccccCCccccchhhcCCCEEEEEEECCcChhHHhHhHHHHH
Confidence 98877765 69999999999999999999999999888999999998568999999999999999999999999999
Q ss_pred HHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHhCCCceeEEEEECCCCcEEEEecCCCc
Q 001380 478 LEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGH 557 (1089)
Q Consensus 478 l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~G~~~ 557 (1089)
++++|+++++.||+|++.+++.+++.+++++++++++++||++.|.+.+++++|+|.++|+++|||++|++++++.|+..
T Consensus 445 l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~~V~~iPt~ilid~~G~iv~~~~G~~~ 524 (1057)
T PLN02919 445 LEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWRELGVSSWPTFAVVSPNGKLIAQLSGEGH 524 (1057)
T ss_pred HHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhcCCCccceEEEECCCCeEEEEEecccC
Confidence 99999988999999998888887889999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhcccccccCCCCCcccccCCCCCCCCCCCCCCceEEEeecCCeEEEEeCCCCEEEEEeCCCCEEEE
Q 001380 558 RKDLDDLVEAALLFYGKKKLLDNTPLPLSLEKDNDPRLFTSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQ 637 (1089)
Q Consensus 558 ~~~l~~~l~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~g~~~~~ 637 (1089)
.+.++++|+.++.+++.++++++.++|..++.+++++..+++|.+|+++++|+.+|+|||+|+++|||++++.+|+++..
T Consensus 525 ~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ 604 (1057)
T PLN02919 525 RKDLDDLVEAALQYYGEKKLLDSTPLPLSLEKDNDPRLLTSPLKFPGKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQ 604 (1057)
T ss_pred HHHHHHHHHHHHHhhccccccccCCCcccccccCCcccccccCCCCceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEE
Confidence 99999999999999999999999999999999999999899999999999998789999999999999999999999999
Q ss_pred EecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCC
Q 001380 638 IGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNS 717 (1089)
Q Consensus 638 i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~ 717 (1089)
+++.+..|+.||.+..+.|+.|+||+++++++.|||+|++||+|+++|+.++.++++++.|..+..+.++..+..+.+++
T Consensus 605 ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~ 684 (1057)
T PLN02919 605 IGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNS 684 (1057)
T ss_pred EccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCC
Confidence 98877889999999999999999999999998899999999999999999999999999998887766666666677999
Q ss_pred ceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeE
Q 001380 718 PWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSI 797 (1089)
Q Consensus 718 P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I 797 (1089)
|++|+++++++.+||+|.++|+|+++|..++.+..+.|.|.....++.......+.+|+||+++++|++|||+|+++++|
T Consensus 685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~I 764 (1057)
T PLN02919 685 PWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSI 764 (1057)
T ss_pred CeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeE
Confidence 99999999777999999999999999999999999999887766666655556789999999999998899999999999
Q ss_pred EEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccCCcEEEEeCCCCEEEEEeCCCCeEEEEeccC
Q 001380 798 RALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIG 877 (1089)
Q Consensus 798 ~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~v~t~~g~g 877 (1089)
++++++++....++++++..+.+++.||+.+|.+..+.+++|.||+++++|++||+|++||+|+++|++++.+.+++|+|
T Consensus 765 rv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G 844 (1057)
T PLN02919 765 RALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTG 844 (1057)
T ss_pred EEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccC
Confidence 99999988888888888888888999999999888899999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEEEEeCCCCCc-eEEEEeecccCCCCCCCCCcccccccCCCCC
Q 001380 878 KAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLDLNKEEP-ELQTLELKGVQPPTPKSRSPKRLRRRSSPDA 956 (1089)
Q Consensus 878 ~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~~~~~~~~-~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~ 956 (1089)
..|+.+|....++|++|.||+++++|+|||+|++||+|+++++.+... .+.++++.++++|.+..+.+.++.++++.++
T Consensus 845 ~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 924 (1057)
T PLN02919 845 KAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEAAEILTLELKGVQPPRPKSKSLKRLRRRSSADT 924 (1057)
T ss_pred CcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCccceeEeeccccccCCCCcccchhhhhhcccccC
Confidence 999999988899999999999999999999999999999999988743 4678888999999987777788777777899
Q ss_pred ceEEecCCCccceEEEEEEEcCCCcccCcCCCceeEEEecCCCeEEecCCCCccCCCCceEEEeeecCCCcceEEEEEEE
Q 001380 957 QTIVVDGGLSNEGNIYLKISLPEEYHFSKEARSKFSVDVEPENAVIIDPLDGNLSPEGSAVLHFRRMSPSVSTGRISCKV 1036 (1089)
Q Consensus 957 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1036 (1089)
.++.++++....+++++++.||+||||+++|+|||.++.+|.+.+.+.|.+|.++.+|+++++++|...+..+.+|+|++
T Consensus 925 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1004 (1057)
T PLN02919 925 QVIKVDGVTSLEGDLQLKISLPPGYHFSKEARSKFEVEVEPENAVDIDPDEGTLSPDGRASLHFKRSSASASTGRISCKV 1004 (1057)
T ss_pred ceeecCCcccccceEEEEEECCCCCccCcCCCceeEEEeccCCceEecCCCceECCCCeEEEEEeeCCCccceeeEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999988888999999999
Q ss_pred EeecCCCCccccceEEeeeeeeccCCCCCeeeeeeeeeccCCCCCCcccccCC
Q 001380 1037 YYCKEDEVCLYKPLLFEVPFQEEVPNSPPAEITLPYDLKPKILTNSLQLPVAP 1089 (1089)
Q Consensus 1037 ~~c~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1089 (1089)
|||++|++|+||++.|+|||+++...+.+++++|+|+|||+++++++|+++++
T Consensus 1005 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1057 (1057)
T PLN02919 1005 YYCKEDEVCLYQSLVFEVPFEEENGGESSSSITLKYTVKPKAPQPSLQLPITR 1057 (1057)
T ss_pred EEecCCcEEEEEeEEEeeeeeeccCCCCCcceeEEEEeccCCCCccccccccC
Confidence 99999999999999999999976778999999999999999999999998875
No 2
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=99.95 E-value=2.4e-26 Score=249.85 Aligned_cols=214 Identities=26% Similarity=0.380 Sum_probs=174.3
Q ss_pred CCCceEEEEecCCcccCCchHHHHHHHHHHHHcCC----CCCHHhH-hhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHH
Q 001380 76 WGKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGV----EVTVEDF-LPFMGTGEANFLGGVASVKGVKGFDSEAAKKRF 150 (1089)
Q Consensus 76 ~~~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (1089)
..++++|||||||||+|+...+..++.++++++|+ +.+.+++ ..+.+.+....+..+... ... ...+....+
T Consensus 19 ~~~~k~viFDlDGTLiDs~~~~~~a~~~~~~~~g~~~g~~~~~~~~~~~~~G~~~~~~~~~~~~~-~~~--~~~~~~~~~ 95 (248)
T PLN02770 19 LAPLEAVLFDVDGTLCDSDPLHYYAFREMLQEINFNGGVPITEEFFVENIAGKHNEDIALGLFPD-DLE--RGLKFTDDK 95 (248)
T ss_pred cCccCEEEEcCCCccCcCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHcCCCCHHHHHHHHcCc-chh--hHHHHHHHH
Confidence 35679999999999999999999999999999864 3455543 455677766666554321 110 111223344
Q ss_pred HHHHHHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHH
Q 001380 151 FEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLS 230 (1089)
Q Consensus 151 ~~~~~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~ 230 (1089)
.+.|.+..... ..++||+.++|++|+++|++++|+||+.+..++..++++|+. .+|+.+++++++...||+|++|.+
T Consensus 96 ~~~y~~~~~~~--~~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~-~~Fd~iv~~~~~~~~KP~p~~~~~ 172 (248)
T PLN02770 96 EALFRKLASEQ--LKPLNGLYKLKKWIEDRGLKRAAVTNAPRENAELMISLLGLS-DFFQAVIIGSECEHAKPHPDPYLK 172 (248)
T ss_pred HHHHHHHHHhc--CCcCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCCh-hhCcEEEecCcCCCCCCChHHHHH
Confidence 44454443332 378999999999999999999999999999999999999996 999999999999999999999999
Q ss_pred HHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccCCHHHHH
Q 001380 231 ASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDIL 295 (1089)
Q Consensus 231 ~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~i~~ll 295 (1089)
+++++|++|++|+||||+..|+++|+++|+++|+|.+|...+.+...+|++++.++.++.+...+
T Consensus 173 a~~~~~~~~~~~l~vgDs~~Di~aA~~aGi~~i~v~~g~~~~~l~~~~a~~vi~~~~e~~~~~~~ 237 (248)
T PLN02770 173 ALEVLKVSKDHTFVFEDSVSGIKAGVAAGMPVVGLTTRNPESLLMEAKPTFLIKDYEDPKLWAAL 237 (248)
T ss_pred HHHHhCCChhHEEEEcCCHHHHHHHHHCCCEEEEEeCCCCHHHHhhcCCCEEeccchhhHHHHHH
Confidence 99999999999999999999999999999999999998766677778999999999997544333
No 3
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.94 E-value=4.4e-25 Score=281.39 Aligned_cols=275 Identities=23% Similarity=0.379 Sum_probs=212.9
Q ss_pred CCCCCccccCCcceeEEeeCCCEEEEEECCCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCC
Q 001380 648 DGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPIN 727 (1089)
Q Consensus 648 dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g 727 (1089)
|+..-...|..|.|+++++.++.|||+|+.+|+|+++|+++..+..+.+.|..|.. .+......|+.|+||++++++
T Consensus 559 ~~~~~~s~l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~---dG~~~~a~f~~P~GIavd~~g 635 (1057)
T PLN02919 559 DPRLLTSPLKFPGKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLR---DGSFEDATFNRPQGLAYNAKK 635 (1057)
T ss_pred CcccccccCCCCceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCC---CCchhccccCCCcEEEEeCCC
Confidence 33333456899999999987666999999999999999988877777665655432 233445679999999999998
Q ss_pred CEEEEEECCCcEEEEEECCCCeEEEEeCCCccccC-CC-CCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCC
Q 001380 728 EKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNL-NG-SSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTG 805 (1089)
Q Consensus 728 ~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~~~-~g-~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~ 805 (1089)
+.|||+|.++|+|+++|..++.+++++|+|..... .| .......+.+|.+|+++++++.|||+|.++++|++++..++
T Consensus 636 n~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g 715 (1057)
T PLN02919 636 NLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDG 715 (1057)
T ss_pred CEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCC
Confidence 89999999999999999999999999987654321 11 11122347899999999966699999999999999999888
Q ss_pred CeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccCCc-EEEEeCCCCEEEEEeCCCCeEEEEeccCC------
Q 001380 806 GSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQ-IYVADSYNHKIKKLDPASNRVSTLAGIGK------ 878 (1089)
Q Consensus 806 ~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~-lyVaD~~n~~I~~~d~~~~~v~t~~g~g~------ 878 (1089)
.+.++.|.... ....| .......+.+|.||+++++|. |||+|+.+|+|+++|++++....+++...
T Consensus 716 ~v~~~~G~G~~----~~~~g---~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l 788 (1057)
T PLN02919 716 VTRVFSGDGYE----RNLNG---SSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNL 788 (1057)
T ss_pred eEEEEecCCcc----ccCCC---CccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCccc
Confidence 77777653210 00111 122345688999999999985 99999999999999998877766654221
Q ss_pred --CCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEEEEeCCCCCceEEEEeecc
Q 001380 879 --AGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLDLNKEEPELQTLELKG 934 (1089)
Q Consensus 879 --~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~~~~~~~~~~~~l~~~~ 934 (1089)
.|..+|....+.++.|.||+++++|+|||+|+.||+|+++++.+. .+.++.+.|
T Consensus 789 ~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg--~v~tiaG~G 844 (1057)
T PLN02919 789 FKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATK--RVTTLAGTG 844 (1057)
T ss_pred ccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCC--eEEEEeccC
Confidence 122345455678999999999999999999999999999999887 677777554
No 4
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=99.94 E-value=6e-26 Score=241.96 Aligned_cols=207 Identities=23% Similarity=0.381 Sum_probs=174.0
Q ss_pred CceEEEEecCCcccCCchHHHHHHHHHHHHcCCC-CCHHhHhhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHH
Q 001380 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVE-VTVEDFLPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIYLD 156 (1089)
Q Consensus 78 ~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (1089)
++++|+||+||||+|+...+..++.+++++++.. .+.+++....|.+....+..+. ....+.....+.+.+.+
T Consensus 2 ~~~~viFD~DGTL~ds~~~~~~a~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 75 (214)
T PRK13288 2 KINTVLFDLDGTLINTNELIISSFLHTLKTYYPNQYKREDVLPFIGPSLHDTFSKID------ESKVEEMITTYREFNHE 75 (214)
T ss_pred CccEEEEeCCCcCccCHHHHHHHHHHHHHHhCCCCCCHHHHHHHhCcCHHHHHHhcC------HHHHHHHHHHHHHHHHH
Confidence 5799999999999999999999999999998764 5777788888887666554431 11233333444444333
Q ss_pred HhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcC
Q 001380 157 KYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILN 236 (1089)
Q Consensus 157 ~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lg 236 (1089)
.... ...++||+.++|+.|+++|++++|+||+....++..++.+|+. .+|+.++++++....||+|++|.+++++++
T Consensus 76 ~~~~--~~~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l~~~gl~-~~f~~i~~~~~~~~~Kp~p~~~~~~~~~~~ 152 (214)
T PRK13288 76 HHDE--LVTEYETVYETLKTLKKQGYKLGIVTTKMRDTVEMGLKLTGLD-EFFDVVITLDDVEHAKPDPEPVLKALELLG 152 (214)
T ss_pred hhhh--hcccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCh-hceeEEEecCcCCCCCCCcHHHHHHHHHcC
Confidence 3322 2378999999999999999999999999999999999999997 999999999999999999999999999999
Q ss_pred CCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCC-CHHHHhhcCCcEEecCcccCCHHHHH
Q 001380 237 VPTSECIVIEDALAGVQAAKAAQMRCIAVTTTL-SEERLKEASPSLIRKEIGSVSLNDIL 295 (1089)
Q Consensus 237 v~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~-~~~~l~~~~~d~vi~dl~el~i~~ll 295 (1089)
+++++++||||+.+|+++|+++|+++++|.+|. ..+++.+..|+++++++.++ .+++
T Consensus 153 ~~~~~~~~iGDs~~Di~aa~~aG~~~i~v~~g~~~~~~l~~~~~~~~i~~~~~l--~~~i 210 (214)
T PRK13288 153 AKPEEALMVGDNHHDILAGKNAGTKTAGVAWTIKGREYLEQYKPDFMLDKMSDL--LAIV 210 (214)
T ss_pred CCHHHEEEECCCHHHHHHHHHCCCeEEEEcCCCCCHHHHhhcCcCEEECCHHHH--HHHH
Confidence 999999999999999999999999999999986 56677778899999999887 4444
No 5
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=99.94 E-value=6.8e-26 Score=242.77 Aligned_cols=210 Identities=24% Similarity=0.356 Sum_probs=178.8
Q ss_pred ceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhh-hcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHH
Q 001380 79 VSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLP-FMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIYLDK 157 (1089)
Q Consensus 79 ~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (1089)
+++|+||+||||+|+.+.+..++.++++++|...+.+++.. +.+.+...+++.+....+......++....+.+.+.+.
T Consensus 1 ~k~iiFD~DGTL~ds~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (220)
T TIGR03351 1 ISLVVLDMAGTTVDEDGLVYRALRQAVTAAGLSPTPEEVQSAWMGQSKIEAIRALLALDGADEAEAQAAFADFEERLAEA 80 (220)
T ss_pred CcEEEEecCCCeeccCchHHHHHHHHHHHcCCCCCHHHHHHhhcCCCHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999888777766 77888888777776655543222334455555555554
Q ss_pred hcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCC-CCccEEEEcCCccCCCCCHHHHHHHHHHcC
Q 001380 158 YAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPV-SMFDAIVSADAFENLKPAPDIFLSASKILN 236 (1089)
Q Consensus 158 ~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~-~~fd~i~~~~~~~~~KP~~~~~~~~l~~lg 236 (1089)
+... ...++||+.++|+.|+++|++++|+||+....++..++.+++.. .+|+.++++++....||+|++|..+++++|
T Consensus 81 ~~~~-~~~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~~~~l~~~~~f~~i~~~~~~~~~KP~p~~~~~a~~~~~ 159 (220)
T TIGR03351 81 YDDG-PPVALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLLEKLGWTVGDDVDAVVCPSDVAAGRPAPDLILRAMELTG 159 (220)
T ss_pred hccc-CCccCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHhhhhhhccCCEEEcCCcCCCCCCCHHHHHHHHHHcC
Confidence 4322 24799999999999999999999999999999999999999831 789999999999899999999999999999
Q ss_pred CC-CCcEEEEcCChhhHHHHHHcCCeE-EEEcCCC-CHHHHhhcCCcEEecCcccC
Q 001380 237 VP-TSECIVIEDALAGVQAAKAAQMRC-IAVTTTL-SEERLKEASPSLIRKEIGSV 289 (1089)
Q Consensus 237 v~-p~~~v~VGD~~~Di~aA~~aG~~~-i~V~~g~-~~~~l~~~~~d~vi~dl~el 289 (1089)
+. |++|+||||+.+|+++|+++||.+ +++.+|. ..+.+...++++++.++.++
T Consensus 160 ~~~~~~~~~igD~~~Di~aa~~aG~~~~i~~~~g~~~~~~~~~~~~~~~i~~~~~l 215 (220)
T TIGR03351 160 VQDVQSVAVAGDTPNDLEAGINAGAGAVVGVLTGAHDAEELSRHPHTHVLDSVADL 215 (220)
T ss_pred CCChhHeEEeCCCHHHHHHHHHCCCCeEEEEecCCCcHHHHhhcCCceeecCHHHH
Confidence 97 799999999999999999999999 9999886 66777778999999999877
No 6
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=99.94 E-value=1e-25 Score=240.16 Aligned_cols=210 Identities=29% Similarity=0.430 Sum_probs=182.0
Q ss_pred CCceEEEEecCCcccCCchHHHHHHHHHHHHcCCC-CCHHhHhhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH
Q 001380 77 GKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVE-VTVEDFLPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIYL 155 (1089)
Q Consensus 77 ~~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (1089)
+++++|+||+||||+|+...+..+++.+++++|+. ...+++....+.+................ ..+..+.+.+.+.
T Consensus 2 ~~~~~iiFDlDGTL~Ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 79 (220)
T COG0546 2 MMIKAILFDLDGTLVDSAEDILRAFNAALAELGLPPLDEEEIRQLIGLGLDELIERLLGEADEEA--AAELVERLREEFL 79 (220)
T ss_pred CCCCEEEEeCCCccccChHHHHHHHHHHHHHcCCCCCCHHHHHHHhcCCHHHHHHHHhccccchh--HHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999 78899999999888877776654333221 1144455555554
Q ss_pred HHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHc
Q 001380 156 DKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKIL 235 (1089)
Q Consensus 156 ~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~l 235 (1089)
+.+.......++||+.++|+.|+++|++++|+||.....++..++++|+. .+|+.+++.+.....||+|..+..+++++
T Consensus 80 ~~~~~~~~~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l~~~gl~-~~F~~i~g~~~~~~~KP~P~~l~~~~~~~ 158 (220)
T COG0546 80 TAYAELLESRLFPGVKELLAALKSAGYKLGIVTNKPERELDILLKALGLA-DYFDVIVGGDDVPPPKPDPEPLLLLLEKL 158 (220)
T ss_pred HHHHhhccCccCCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHhCCc-cccceEEcCCCCCCCCcCHHHHHHHHHHh
Confidence 44433312378999999999999999999999999999999999999997 99999999888899999999999999999
Q ss_pred CCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCC-CHHHHhhcCCcEEecCcccC
Q 001380 236 NVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTL-SEERLKEASPSLIRKEIGSV 289 (1089)
Q Consensus 236 gv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~-~~~~l~~~~~d~vi~dl~el 289 (1089)
|++|++++||||+.+|+++|++||+.+++|.+|. ..+.+....||+++.++.+|
T Consensus 159 ~~~~~~~l~VGDs~~Di~aA~~Ag~~~v~v~~g~~~~~~l~~~~~d~vi~~~~el 213 (220)
T COG0546 159 GLDPEEALMVGDSLNDILAAKAAGVPAVGVTWGYNSREELAQAGADVVIDSLAEL 213 (220)
T ss_pred CCChhheEEECCCHHHHHHHHHcCCCEEEEECCCCCCcchhhcCCCEEECCHHHH
Confidence 9998899999999999999999999999999997 57888888999999999888
No 7
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=99.94 E-value=9.8e-26 Score=246.68 Aligned_cols=208 Identities=25% Similarity=0.373 Sum_probs=169.0
Q ss_pred ceEEEEecCCcccCCch-HHHHHHHHHHHHcCCCCCHHhHhhhcCCCHHHHHHHH----------HhhcCCCC--CCHHH
Q 001380 79 VSAVLFDMDGVLCNSEE-PSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGV----------ASVKGVKG--FDSEA 145 (1089)
Q Consensus 79 ~k~ViFD~DGTL~d~~~-~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~--~~~~~ 145 (1089)
+++||||+||||+|+.. .+..++.++++++|++.+.+++....+.+.......+ ....+... ...+.
T Consensus 2 ~k~viFD~DGTLiDs~~~~~~~a~~~~~~~~g~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (253)
T TIGR01422 2 IEAVIFDWAGTTVDFGSFAPTQAFVEAFAEFGVQITLEEARGPMGLGKWDHIRALLKMPAVAERWRAKFGRLPTEADIEA 81 (253)
T ss_pred ceEEEEeCCCCeecCCCccHHHHHHHHHHHcCCCccHHHHHHhcCccHHHHHHHHhcCHHHHHHHHHHhCCCCCHHHHHH
Confidence 68999999999999865 3578999999999998888888777777654443322 22223211 11223
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCc-cEEEEcCCccCCCCC
Q 001380 146 AKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMF-DAIVSADAFENLKPA 224 (1089)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~f-d~i~~~~~~~~~KP~ 224 (1089)
....+.+.+.+.+... ..++||+.++|+.|+++|++++|+||.....++.+++++|+. .+| |.|++++++...||+
T Consensus 82 ~~~~~~~~~~~~~~~~--~~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l~~~gl~-~~f~d~ii~~~~~~~~KP~ 158 (253)
T TIGR01422 82 IYEAFEPLQLAKLAEY--SSPIPGVIEVIAYLRARGIKIGSTTGYTREMMDVVAPEAALQ-GYRPDYNVTTDDVPAGRPA 158 (253)
T ss_pred HHHHHHHHHHHHHHhc--CccCCCHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHHHHhc-CCCCceEEccccCCCCCCC
Confidence 3334444444433332 478999999999999999999999999999999999999996 875 999999999999999
Q ss_pred HHHHHHHHHHcCCC-CCcEEEEcCChhhHHHHHHcCCeEEEEcCCCC------------------------HHHHhhcCC
Q 001380 225 PDIFLSASKILNVP-TSECIVIEDALAGVQAAKAAQMRCIAVTTTLS------------------------EERLKEASP 279 (1089)
Q Consensus 225 ~~~~~~~l~~lgv~-p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~------------------------~~~l~~~~~ 279 (1089)
|++|..+++++|+. |++|+||||+.+|+++|+++||++|+|.+|.. .+++.+++|
T Consensus 159 p~~~~~a~~~l~~~~~~~~l~IGDs~~Di~aA~~aGi~~i~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 238 (253)
T TIGR01422 159 PWMALKNAIELGVYDVAACVKVGDTVPDIEEGRNAGMWTVGLILSSNELGLSEEEYRALDPAELEARRAEATARLKAAGA 238 (253)
T ss_pred HHHHHHHHHHcCCCCchheEEECCcHHHHHHHHHCCCeEEEEecCCcccCCCHHHHHhCCHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999995 99999999999999999999999999999863 467888899
Q ss_pred cEEecCcccC
Q 001380 280 SLIRKEIGSV 289 (1089)
Q Consensus 280 d~vi~dl~el 289 (1089)
+++++++.++
T Consensus 239 ~~v~~~~~el 248 (253)
T TIGR01422 239 HYVIDTLAEL 248 (253)
T ss_pred CEehhcHHHH
Confidence 9999999987
No 8
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=99.94 E-value=1.3e-25 Score=250.78 Aligned_cols=216 Identities=21% Similarity=0.294 Sum_probs=177.6
Q ss_pred CCceEEEEecCCcccCCch-HHHHHHHHHHHHcCCCCCHHh-HhhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHH
Q 001380 77 GKVSAVLFDMDGVLCNSEE-PSRRAAVDVFAEMGVEVTVED-FLPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIY 154 (1089)
Q Consensus 77 ~~~k~ViFD~DGTL~d~~~-~~~~a~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (1089)
...++|||||||||+|+.. .+..+|.++++++|+..+.++ +..+.|.+...++..+..... .....++...++.+.|
T Consensus 129 ~~~~~VIFDlDGTLIDS~~~i~~~a~~~l~~e~G~~~~~~e~~~~~~G~~~~~~l~~ll~~~~-~~~~~e~l~~~~~~~y 207 (381)
T PLN02575 129 CGWLGAIFEWEGVIIEDNPDLENQAWLTLAQEEGKSPPPAFILRRVEGMKNEQAISEVLCWSR-DPAELRRMATRKEEIY 207 (381)
T ss_pred CCCCEEEEcCcCcceeCHHHHHHHHHHHHHHHcCCCCCHHHHHHHhcCCCHHHHHHHHhhccC-CHHHHHHHHHHHHHHH
Confidence 4689999999999999987 566799999999999876664 567888888887776654221 1112233444455555
Q ss_pred HHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHH
Q 001380 155 LDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKI 234 (1089)
Q Consensus 155 ~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~ 234 (1089)
.+..... ..++||+.++|+.|+++|++++|+||+.+..++..++.+|+. .|||.|++++++...||+|++|..++++
T Consensus 208 ~~~~~~~--~~l~pGa~ElL~~Lk~~GiklaIaSn~~~~~~~~~L~~lgL~-~yFd~Iv~sddv~~~KP~Peifl~A~~~ 284 (381)
T PLN02575 208 QALQGGI--YRLRTGSQEFVNVLMNYKIPMALVSTRPRKTLENAIGSIGIR-GFFSVIVAAEDVYRGKPDPEMFIYAAQL 284 (381)
T ss_pred HHHhccC--CCcCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCH-HHceEEEecCcCCCCCCCHHHHHHHHHH
Confidence 4444322 378999999999999999999999999999999999999996 9999999999999999999999999999
Q ss_pred cCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccCCHHHHHhcc
Q 001380 235 LNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDILTGG 298 (1089)
Q Consensus 235 lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~i~~ll~~~ 298 (1089)
+|+.|++|+||||+..|+++|+++||++|+|.++....++ ..+++++.++.+|.+..+....
T Consensus 285 lgl~Peecl~IGDS~~DIeAAk~AGm~~IgV~~~~~~~~l--~~Ad~iI~s~~EL~~~~l~~l~ 346 (381)
T PLN02575 285 LNFIPERCIVFGNSNQTVEAAHDARMKCVAVASKHPIYEL--GAADLVVRRLDELSIVDLKNLA 346 (381)
T ss_pred cCCCcccEEEEcCCHHHHHHHHHcCCEEEEECCCCChhHh--cCCCEEECCHHHHHHHHHhhhh
Confidence 9999999999999999999999999999999987544443 3589999999999776664443
No 9
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=99.94 E-value=2.2e-25 Score=238.95 Aligned_cols=214 Identities=28% Similarity=0.433 Sum_probs=177.4
Q ss_pred CceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCH-HhHhhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHH
Q 001380 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTV-EDFLPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIYLD 156 (1089)
Q Consensus 78 ~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (1089)
++++|+||+||||+|+...+..++.++++++|+..+. +.+...++.........+................++.+.+.+
T Consensus 6 ~~k~iiFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (222)
T PRK10826 6 QILAAIFDMDGLLIDSEPLWDRAELDVMASLGVDISRREELPDTLGLRIDQVVDLWYARQPWNGPSRQEVVQRIIARVIS 85 (222)
T ss_pred cCcEEEEcCCCCCCcCHHHHHHHHHHHHHHCCCCCCHHHHHHHhhCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999998765 566677777766665554444333333445555566665555
Q ss_pred HhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcC
Q 001380 157 KYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILN 236 (1089)
Q Consensus 157 ~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lg 236 (1089)
.+... ..++||+.++|+.|+++|++++|+||+....++..++++++. .+|+.+++++++..+||+|++|..+++++|
T Consensus 86 ~~~~~--~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~-~~f~~~~~~~~~~~~Kp~~~~~~~~~~~~~ 162 (222)
T PRK10826 86 LIEET--RPLLPGVREALALCKAQGLKIGLASASPLHMLEAVLTMFDLR-DYFDALASAEKLPYSKPHPEVYLNCAAKLG 162 (222)
T ss_pred HHhcC--CCCCCCHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHhCcch-hcccEEEEcccCCCCCCCHHHHHHHHHHcC
Confidence 44433 379999999999999999999999999999999999999996 999999999999999999999999999999
Q ss_pred CCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccCCHHHH
Q 001380 237 VPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDI 294 (1089)
Q Consensus 237 v~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~i~~l 294 (1089)
++|++|+||||+.+|+++|+++|+++|++.++....+.....+++++.++.++.-..+
T Consensus 163 ~~~~~~~~igDs~~Di~aA~~aG~~~i~v~~~~~~~~~~~~~~~~~~~~~~dl~~~~~ 220 (222)
T PRK10826 163 VDPLTCVALEDSFNGMIAAKAARMRSIVVPAPEQQNDPRWALADVKLESLTELTAADL 220 (222)
T ss_pred CCHHHeEEEcCChhhHHHHHHcCCEEEEecCCccCchhhhhhhheeccCHHHHhhhhh
Confidence 9999999999999999999999999999998764433334468999999988844333
No 10
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=99.94 E-value=1.3e-25 Score=241.31 Aligned_cols=208 Identities=18% Similarity=0.263 Sum_probs=173.4
Q ss_pred CCceEEEEecCCcccCCchHHHHHHHHHHHHcCCC-CCHHhHhhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH
Q 001380 77 GKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVE-VTVEDFLPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIYL 155 (1089)
Q Consensus 77 ~~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (1089)
.|+++||||+||||+|+...+..++..+++++|.. .+.+++....+.+...+....... ......++....+.+.|.
T Consensus 10 ~~~k~viFD~DGTL~Ds~~~~~~a~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 87 (229)
T PRK13226 10 RFPRAVLFDLDGTLLDSAPDMLATVNAMLAARGRAPITLAQLRPVVSKGARAMLAVAFPE--LDAAARDALIPEFLQRYE 87 (229)
T ss_pred ccCCEEEEcCcCccccCHHHHHHHHHHHHHHCCCCCCCHHHHHHHhhhHHHHHHHHHhcc--CChHHHHHHHHHHHHHHH
Confidence 45699999999999999999999999999999986 566777777776665554443221 111123455566666666
Q ss_pred HHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHc
Q 001380 156 DKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKIL 235 (1089)
Q Consensus 156 ~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~l 235 (1089)
..+... ..++||+.++|+.|+++|++++|+||+....+...++++++. .+|+.++++++....||+|++|.++++++
T Consensus 88 ~~~~~~--~~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~~~~~l~~~~l~-~~f~~i~~~~~~~~~KP~p~~~~~~~~~l 164 (229)
T PRK13226 88 ALIGTQ--SQLFDGVEGMLQRLECAGCVWGIVTNKPEYLARLILPQLGWE-QRCAVLIGGDTLAERKPHPLPLLVAAERI 164 (229)
T ss_pred Hhhhhc--CeeCCCHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCch-hcccEEEecCcCCCCCCCHHHHHHHHHHh
Confidence 554433 378999999999999999999999999999999999999996 99999999998888999999999999999
Q ss_pred CCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCC--CHHHHhhcCCcEEecCcccC
Q 001380 236 NVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTL--SEERLKEASPSLIRKEIGSV 289 (1089)
Q Consensus 236 gv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~--~~~~l~~~~~d~vi~dl~el 289 (1089)
|++|++|+||||+.+|+++|+++|+++|+|.+|. ..+.+...+|+++++++.+|
T Consensus 165 ~~~p~~~l~IGDs~~Di~aA~~aG~~~i~v~~g~~~~~~~~~~~~~~~~i~~~~el 220 (229)
T PRK13226 165 GVAPTDCVYVGDDERDILAARAAGMPSVAALWGYRLHDDDPLAWQADVLVEQPQLL 220 (229)
T ss_pred CCChhhEEEeCCCHHHHHHHHHCCCcEEEEeecCCCCCcChhhcCCCeeeCCHHHH
Confidence 9999999999999999999999999999999986 23445567899999999887
No 11
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=99.93 E-value=4.5e-25 Score=239.56 Aligned_cols=215 Identities=21% Similarity=0.274 Sum_probs=169.7
Q ss_pred CCceEEEEecCCcccCCc-hHHHHHHHHHHHHcCCCCCHHhH-hhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHH
Q 001380 77 GKVSAVLFDMDGVLCNSE-EPSRRAAVDVFAEMGVEVTVEDF-LPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIY 154 (1089)
Q Consensus 77 ~~~k~ViFD~DGTL~d~~-~~~~~a~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (1089)
..+++|||||||||+|+. ..+..+|.++++++|+.++.++. ....|.+....++.+.... ............+...+
T Consensus 22 ~~~k~vIFDlDGTLvDS~~~~~~~a~~~~~~~~G~~~~~~e~~~~~~G~~~~~~~~~l~~~~-~~~~~~~~l~~~~~~~~ 100 (260)
T PLN03243 22 CGWLGVVLEWEGVIVEDDSELERKAWRALAEEEGKRPPPAFLLKRAEGMKNEQAISEVLCWS-RDFLQMKRLAIRKEDLY 100 (260)
T ss_pred CCceEEEEeCCCceeCCchHHHHHHHHHHHHHcCCCCCHHHHHHHhcCCCHHHHHHHHhccC-CCHHHHHHHHHHHHHHH
Confidence 468999999999999996 46678999999999998766554 5677888777766554321 11101122233333333
Q ss_pred HHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHH
Q 001380 155 LDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKI 234 (1089)
Q Consensus 155 ~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~ 234 (1089)
. .+.. ....++||+.++|+.|+++|++++|+||.....++..++++|+. .+|+.+++++++...||+|++|..++++
T Consensus 101 ~-~~~~-~~~~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~-~~Fd~ii~~~d~~~~KP~Pe~~~~a~~~ 177 (260)
T PLN03243 101 E-YMQG-GLYRLRPGSREFVQALKKHEIPIAVASTRPRRYLERAIEAVGME-GFFSVVLAAEDVYRGKPDPEMFMYAAER 177 (260)
T ss_pred H-HHHc-cCcccCCCHHHHHHHHHHCCCEEEEEeCcCHHHHHHHHHHcCCH-hhCcEEEecccCCCCCCCHHHHHHHHHH
Confidence 2 2221 13478999999999999999999999999999999999999996 9999999999999999999999999999
Q ss_pred cCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccCCHHHHHhcc
Q 001380 235 LNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDILTGG 298 (1089)
Q Consensus 235 lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~i~~ll~~~ 298 (1089)
+|++|++|+||||+..|+++|+++||++|+|.+......+. .+++++.++.++. ...+..+
T Consensus 178 l~~~p~~~l~IgDs~~Di~aA~~aG~~~i~v~g~~~~~~l~--~ad~vi~~~~el~-~~~~~~~ 238 (260)
T PLN03243 178 LGFIPERCIVFGNSNSSVEAAHDGCMKCVAVAGKHPVYELS--AGDLVVRRLDDLS-VVDLKNL 238 (260)
T ss_pred hCCChHHeEEEcCCHHHHHHHHHcCCEEEEEecCCchhhhc--cCCEEeCCHHHHH-HHHHhhh
Confidence 99999999999999999999999999999997433444443 5899999999994 3344444
No 12
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=99.93 E-value=4.7e-25 Score=242.99 Aligned_cols=214 Identities=25% Similarity=0.379 Sum_probs=170.5
Q ss_pred CCceEEEEecCCcccCCchH-HHHHHHHHHHHcCCCCCHHhHhhhcCCCHHHHHHHH----------HhhcCCCCC--CH
Q 001380 77 GKVSAVLFDMDGVLCNSEEP-SRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGV----------ASVKGVKGF--DS 143 (1089)
Q Consensus 77 ~~~k~ViFD~DGTL~d~~~~-~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~--~~ 143 (1089)
+++++||||+||||+|+... +..++.++++++|++.+.+++...++.+.......+ ....+.... ..
T Consensus 2 ~~~k~vIFDlDGTLiDs~~~~~~~a~~~~~~~~g~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 81 (267)
T PRK13478 2 MKIQAVIFDWAGTTVDFGSFAPTQAFVEAFAQFGVEITLEEARGPMGLGKWDHIRALLKMPRVAARWQAVFGRLPTEADV 81 (267)
T ss_pred CceEEEEEcCCCCeecCCCccHHHHHHHHHHHcCCCCCHHHHHHhcCCCHHHHHHHHHhcHHHHHHHHHHhCCCCCHHHH
Confidence 45899999999999998653 468999999999998887777777776654433322 222332210 11
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCC-ccEEEEcCCccCCC
Q 001380 144 EAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSM-FDAIVSADAFENLK 222 (1089)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~-fd~i~~~~~~~~~K 222 (1089)
.+....+.+.+.+.+... ..++||+.++|+.|+++|++++|+||.....++..++.+++. .+ +|.+++++++...|
T Consensus 82 ~~~~~~~~~~~~~~~~~~--~~~~pg~~elL~~L~~~g~~l~I~T~~~~~~~~~~l~~~~l~-~~~~d~i~~~~~~~~~K 158 (267)
T PRK13478 82 DALYAAFEPLQIAKLADY--ATPIPGVLEVIAALRARGIKIGSTTGYTREMMDVVVPLAAAQ-GYRPDHVVTTDDVPAGR 158 (267)
T ss_pred HHHHHHHHHHHHHHHhhc--CCCCCCHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHHhhc-CCCceEEEcCCcCCCCC
Confidence 233334444444433332 378999999999999999999999999999999999999986 66 49999999999999
Q ss_pred CCHHHHHHHHHHcCCC-CCcEEEEcCChhhHHHHHHcCCeEEEEcCCCC------------------------HHHHhhc
Q 001380 223 PAPDIFLSASKILNVP-TSECIVIEDALAGVQAAKAAQMRCIAVTTTLS------------------------EERLKEA 277 (1089)
Q Consensus 223 P~~~~~~~~l~~lgv~-p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~------------------------~~~l~~~ 277 (1089)
|+|++|..+++++|+. +++|+||||+.+|+++|+++|+++|+|.+|.. .+++.+.
T Consensus 159 P~p~~~~~a~~~l~~~~~~e~l~IGDs~~Di~aA~~aG~~~i~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 238 (267)
T PRK13478 159 PYPWMALKNAIELGVYDVAACVKVDDTVPGIEEGLNAGMWTVGVILSGNELGLSEEEYQALSAAELAARRERARARLRAA 238 (267)
T ss_pred CChHHHHHHHHHcCCCCCcceEEEcCcHHHHHHHHHCCCEEEEEccCcccccCCHHHHHhcCHHHHHHHHHHHHHHHHHc
Confidence 9999999999999996 69999999999999999999999999999863 3577788
Q ss_pred CCcEEecCcccCCHHHHH
Q 001380 278 SPSLIRKEIGSVSLNDIL 295 (1089)
Q Consensus 278 ~~d~vi~dl~el~i~~ll 295 (1089)
+|+++++++.+| .++|
T Consensus 239 ~a~~vi~~~~~l--~~~l 254 (267)
T PRK13478 239 GAHYVIDTIADL--PAVI 254 (267)
T ss_pred CCCeehhhHHHH--HHHH
Confidence 999999999998 4554
No 13
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=99.93 E-value=6.1e-25 Score=234.28 Aligned_cols=205 Identities=23% Similarity=0.368 Sum_probs=171.7
Q ss_pred EEEecCCcccCCchHHHHHHHHHHHHcCCC-CCHHhHhhhcCCCHHHHHHHHHhhcCCCCC--CHHHHHHHHHHHHHHHh
Q 001380 82 VLFDMDGVLCNSEEPSRRAAVDVFAEMGVE-VTVEDFLPFMGTGEANFLGGVASVKGVKGF--DSEAAKKRFFEIYLDKY 158 (1089)
Q Consensus 82 ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 158 (1089)
||||+||||+|+...+..++.++++++|.. .+.+.+....+.+...+...+....+.... ...+..+.+.+.|.+.+
T Consensus 1 viFD~DGTL~Ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (213)
T TIGR01449 1 VLFDLDGTLVDSAPDIAAAVNMALAALGLPPATLARVIGFIGNGVPVLMERVLAWAGQEPDAQRVAELRKLFDRHYEEVA 80 (213)
T ss_pred CeecCCCccccCHHHHHHHHHHHHHHCCCCCCCHHHHHHHhcccHHHHHHHHhhccccccChHHHHHHHHHHHHHHHHhc
Confidence 699999999999999999999999999986 577777777787777666666554443211 12233444444444443
Q ss_pred cCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCC
Q 001380 159 AKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVP 238 (1089)
Q Consensus 159 ~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~ 238 (1089)
... ..++||+.++|+.|+++|++++|+||+....++..++++|+. .+|+.++++++....||+|++|.++++++|++
T Consensus 81 ~~~--~~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~-~~f~~~~~~~~~~~~Kp~p~~~~~~~~~~~~~ 157 (213)
T TIGR01449 81 GEL--TSVFPGVEATLGALRAKGLRLGLVTNKPTPLARPLLELLGLA-KYFSVLIGGDSLAQRKPHPDPLLLAAERLGVA 157 (213)
T ss_pred ccc--CccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCcH-hhCcEEEecCCCCCCCCChHHHHHHHHHcCCC
Confidence 322 378999999999999999999999999999999999999996 99999999999999999999999999999999
Q ss_pred CCcEEEEcCChhhHHHHHHcCCeEEEEcCCC-CHHHHhhcCCcEEecCcccC
Q 001380 239 TSECIVIEDALAGVQAAKAAQMRCIAVTTTL-SEERLKEASPSLIRKEIGSV 289 (1089)
Q Consensus 239 p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~-~~~~l~~~~~d~vi~dl~el 289 (1089)
|++|+||||+.+|+++|+++|+.+++|.+|. ..+.+...+++++++++.++
T Consensus 158 ~~~~~~igDs~~d~~aa~~aG~~~i~v~~g~~~~~~l~~~~a~~~i~~~~~l 209 (213)
T TIGR01449 158 PQQMVYVGDSRVDIQAARAAGCPSVLLTYGYRYGEAIDLLPPDVLYDSLNEL 209 (213)
T ss_pred hhHeEEeCCCHHHHHHHHHCCCeEEEEccCCCCCcchhhcCCCeEeCCHHHH
Confidence 9999999999999999999999999999987 45566667899999999886
No 14
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=99.92 E-value=1.3e-24 Score=230.84 Aligned_cols=190 Identities=37% Similarity=0.510 Sum_probs=159.2
Q ss_pred CceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHH
Q 001380 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIYLDK 157 (1089)
Q Consensus 78 ~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (1089)
++++|||||||||+|++..+.++|.++++++|+..+.+.+....+.........+.........................
T Consensus 1 ~~~avIFD~DGvLvDse~~~~~a~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (221)
T COG0637 1 MIKAVIFDMDGTLVDSEPLHARAWLEALKEYGIEISDEEIRELHGGGIARIIDLLRKLAAGEDPADLAELERLLYEAEAL 80 (221)
T ss_pred CCcEEEEcCCCCcCcchHHHHHHHHHHHHHcCCCCCHHHHHHHHCCChHHHHHHHHHHhcCCcccCHHHHHHHHHHHHHh
Confidence 47999999999999999999999999999999999998888888877666666666554432211122222222222222
Q ss_pred hcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCC
Q 001380 158 YAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNV 237 (1089)
Q Consensus 158 ~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv 237 (1089)
... ...++||+.++|++|+++|+++++.|+..+..++..++.+|+. .+|+.+++++++..+||+|++|.++++++|+
T Consensus 81 ~~~--~~~~~pGv~~~l~~L~~~~i~~avaS~s~~~~~~~~L~~~gl~-~~f~~~v~~~dv~~~KP~Pd~yL~Aa~~Lgv 157 (221)
T COG0637 81 ELE--GLKPIPGVVELLEQLKARGIPLAVASSSPRRAAERVLARLGLL-DYFDVIVTADDVARGKPAPDIYLLAAERLGV 157 (221)
T ss_pred hhc--CCCCCccHHHHHHHHHhcCCcEEEecCChHHHHHHHHHHccCh-hhcchhccHHHHhcCCCCCHHHHHHHHHcCC
Confidence 222 2379999999999999999999999999999999999999996 9999999999999999999999999999999
Q ss_pred CCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCC
Q 001380 238 PTSECIVIEDALAGVQAAKAAQMRCIAVTTTLS 270 (1089)
Q Consensus 238 ~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~ 270 (1089)
.|++||+|+|+.++|++|++|||.+|+|..+..
T Consensus 158 ~P~~CvviEDs~~Gi~Aa~aAGm~vv~v~~~~~ 190 (221)
T COG0637 158 DPEECVVVEDSPAGIQAAKAAGMRVVGVPAGHD 190 (221)
T ss_pred ChHHeEEEecchhHHHHHHHCCCEEEEecCCCC
Confidence 999999999999999999999999999998544
No 15
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=99.92 E-value=4.9e-24 Score=234.30 Aligned_cols=211 Identities=23% Similarity=0.398 Sum_probs=171.1
Q ss_pred CCceEEEEecCCcccCCchHHHHHHHHHHHHcCCCC-CHHhHhhhcCCCHHHHHHHHHhh-cCCCCCCHHHHHHHHHHHH
Q 001380 77 GKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEV-TVEDFLPFMGTGEANFLGGVASV-KGVKGFDSEAAKKRFFEIY 154 (1089)
Q Consensus 77 ~~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 154 (1089)
+++++|+||+||||+|+...+..++.++++++|... ..+++..+.+.+...+...+... ....... +...+++.+.+
T Consensus 11 ~~~k~viFDlDGTL~Ds~~~~~~a~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~ 89 (272)
T PRK13223 11 RLPRLVMFDLDGTLVDSVPDLAAAVDRMLLELGRPPAGLEAVRHWVGNGAPVLVRRALAGSIDHDGVD-DELAEQALALF 89 (272)
T ss_pred ccCCEEEEcCCCccccCHHHHHHHHHHHHHHcCCCCCCHHHHHHHhChhHHHHHHHHhcccccccCCC-HHHHHHHHHHH
Confidence 467999999999999999999999999999999985 44566677777766555544321 1111111 22233333333
Q ss_pred HHHhcCC-CCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHH
Q 001380 155 LDKYAKP-NSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASK 233 (1089)
Q Consensus 155 ~~~~~~~-~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~ 233 (1089)
.+.+... ....++||+.++|+.|+++|++++|+||.....++..++++++. .+|+.++++++....||+|++|+.+++
T Consensus 90 ~~~~~~~~~~~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~~~l~~~~i~-~~f~~i~~~d~~~~~Kp~p~~~~~~~~ 168 (272)
T PRK13223 90 MEAYADSHELTVVYPGVRDTLKWLKKQGVEMALITNKPERFVAPLLDQMKIG-RYFRWIIGGDTLPQKKPDPAALLFVMK 168 (272)
T ss_pred HHHHHhcCcCCccCCCHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHHcCcH-hhCeEEEecCCCCCCCCCcHHHHHHHH
Confidence 3333221 12468999999999999999999999999999999999999996 999999999998889999999999999
Q ss_pred HcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCC-CHHHHhhcCCcEEecCcccC
Q 001380 234 ILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTL-SEERLKEASPSLIRKEIGSV 289 (1089)
Q Consensus 234 ~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~-~~~~l~~~~~d~vi~dl~el 289 (1089)
++|+++++|+||||+.+|+++|+++||.+++|.+|. ..+++....+++++.++.+|
T Consensus 169 ~~g~~~~~~l~IGD~~~Di~aA~~aGi~~i~v~~G~~~~~~l~~~~~~~vi~~l~el 225 (272)
T PRK13223 169 MAGVPPSQSLFVGDSRSDVLAAKAAGVQCVALSYGYNHGRPIAEESPALVIDDLRAL 225 (272)
T ss_pred HhCCChhHEEEECCCHHHHHHHHHCCCeEEEEecCCCCchhhhhcCCCEEECCHHHH
Confidence 999999999999999999999999999999999986 56666667899999999887
No 16
>PRK11587 putative phosphatase; Provisional
Probab=99.92 E-value=6.3e-24 Score=226.80 Aligned_cols=201 Identities=26% Similarity=0.372 Sum_probs=158.6
Q ss_pred CceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHH--HH
Q 001380 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEI--YL 155 (1089)
Q Consensus 78 ~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 155 (1089)
++++|+||+||||+|+...+..++.++++++|++.. +......+.+....++.+.. + ...+...+.+.+. +.
T Consensus 2 ~~k~viFDlDGTL~Ds~~~~~~a~~~~~~~~g~~~~-~~~~~~~g~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~ 75 (218)
T PRK11587 2 RCKGFLFDLDGTLVDSLPAVERAWSNWADRHGIAPD-EVLNFIHGKQAITSLRHFMA--G---ASEAEIQAEFTRLEQIE 75 (218)
T ss_pred CCCEEEEcCCCCcCcCHHHHHHHHHHHHHHcCCCHH-HHHHHHcCCCHHHHHHHHhc--c---CCcHHHHHHHHHHHHHH
Confidence 579999999999999999999999999999998642 22333346666655554432 1 1223333333321 22
Q ss_pred HHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHc
Q 001380 156 DKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKIL 235 (1089)
Q Consensus 156 ~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~l 235 (1089)
..... ...++||+.++|+.|+++|++++|+||+........++..++ .+++.+++++++...||+|++|..+++++
T Consensus 76 ~~~~~--~~~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~~~~~l~~~~l--~~~~~i~~~~~~~~~KP~p~~~~~~~~~~ 151 (218)
T PRK11587 76 ATDTE--GITALPGAIALLNHLNKLGIPWAIVTSGSVPVASARHKAAGL--PAPEVFVTAERVKRGKPEPDAYLLGAQLL 151 (218)
T ss_pred Hhhhc--CceeCcCHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHhcCC--CCccEEEEHHHhcCCCCCcHHHHHHHHHc
Confidence 22222 347899999999999999999999999988888888888888 45788999988888999999999999999
Q ss_pred CCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccCC
Q 001380 236 NVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVS 290 (1089)
Q Consensus 236 gv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~ 290 (1089)
|+.|++|+||||+..|+++|+++||.+++|.++....+ ...+++++.++.+|.
T Consensus 152 g~~p~~~l~igDs~~di~aA~~aG~~~i~v~~~~~~~~--~~~~~~~~~~~~el~ 204 (218)
T PRK11587 152 GLAPQECVVVEDAPAGVLSGLAAGCHVIAVNAPADTPR--LDEVDLVLHSLEQLT 204 (218)
T ss_pred CCCcccEEEEecchhhhHHHHHCCCEEEEECCCCchhh--hccCCEEecchhhee
Confidence 99999999999999999999999999999988753332 346899999999883
No 17
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=99.92 E-value=7.4e-24 Score=231.51 Aligned_cols=205 Identities=19% Similarity=0.270 Sum_probs=168.1
Q ss_pred CceEEEEecCCcccCCchHHHHHHHHHHHHcCCC-CCHHhHhhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHH
Q 001380 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVE-VTVEDFLPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIYLD 156 (1089)
Q Consensus 78 ~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (1089)
++++|+|||||||+|+...+..++.++++++|++ .+.+++....+.....+.+. .+......++..+++.+.+..
T Consensus 61 ~~k~vIFDlDGTLiDS~~~~~~a~~~~~~~~G~~~~~~~~~~~~~g~~~~~i~~~----~~~~~~~~~~~~~~~~~~~~~ 136 (273)
T PRK13225 61 TLQAIIFDFDGTLVDSLPTVVAIANAHAPDFGYDPIDERDYAQLRQWSSRTIVRR----AGLSPWQQARLLQRVQRQLGD 136 (273)
T ss_pred hcCEEEECCcCccccCHHHHHHHHHHHHHHCCCCCCCHHHHHHHhCccHHHHHHH----cCCCHHHHHHHHHHHHHHHHh
Confidence 5799999999999999999999999999999987 56666777777665555433 233222233444455444433
Q ss_pred HhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcC
Q 001380 157 KYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILN 236 (1089)
Q Consensus 157 ~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lg 236 (1089)
.+ . ...++||+.++|+.|+++|++++|+||+....++..++.+|+. .+|+.++++++. +++++.|.+++++++
T Consensus 137 ~~-~--~~~l~pg~~e~L~~L~~~gi~laIvSn~~~~~~~~~L~~~gl~-~~F~~vi~~~~~---~~k~~~~~~~l~~~~ 209 (273)
T PRK13225 137 CL-P--ALQLFPGVADLLAQLRSRSLCLGILSSNSRQNIEAFLQRQGLR-SLFSVVQAGTPI---LSKRRALSQLVAREG 209 (273)
T ss_pred hc-c--cCCcCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCh-hheEEEEecCCC---CCCHHHHHHHHHHhC
Confidence 22 2 2378999999999999999999999999999999999999996 999999888765 356789999999999
Q ss_pred CCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCC-CHHHHhhcCCcEEecCcccCCHHHHH
Q 001380 237 VPTSECIVIEDALAGVQAAKAAQMRCIAVTTTL-SEERLKEASPSLIRKEIGSVSLNDIL 295 (1089)
Q Consensus 237 v~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~-~~~~l~~~~~d~vi~dl~el~i~~ll 295 (1089)
++|++|+||||+..|+++|+++||++|+|.+|. ..+++.+.+|+++++++.+| .+++
T Consensus 210 ~~p~~~l~IGDs~~Di~aA~~AG~~~I~v~~g~~~~~~l~~~~ad~~i~~~~eL--~~~~ 267 (273)
T PRK13225 210 WQPAAVMYVGDETRDVEAARQVGLIAVAVTWGFNDRQSLVAACPDWLLETPSDL--LQAV 267 (273)
T ss_pred cChhHEEEECCCHHHHHHHHHCCCeEEEEecCCCCHHHHHHCCCCEEECCHHHH--HHHH
Confidence 999999999999999999999999999999987 66678788999999999888 4444
No 18
>PLN02940 riboflavin kinase
Probab=99.92 E-value=1e-23 Score=241.66 Aligned_cols=211 Identities=29% Similarity=0.415 Sum_probs=180.8
Q ss_pred CCceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHH
Q 001380 77 GKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIYLD 156 (1089)
Q Consensus 77 ~~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (1089)
..+++|+||+||||+|+...+..++.++++++|..++.+++....+.+....+..+....+... ..++....+.+.+.+
T Consensus 9 ~~ik~VIFDlDGTLvDt~~~~~~a~~~~~~~~G~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 87 (382)
T PLN02940 9 KLVSHVILDLDGTLLNTDGIVSDVLKAFLVKYGKQWDGREAQKIVGKTPLEAAATVVEDYGLPC-STDEFNSEITPLLSE 87 (382)
T ss_pred ccCCEEEECCcCcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHhcCCCHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHH
Confidence 4589999999999999999999999999999999888888888888888777777766666543 455566666666655
Q ss_pred HhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHH-HCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHc
Q 001380 157 KYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLA-AAGLPVSMFDAIVSADAFENLKPAPDIFLSASKIL 235 (1089)
Q Consensus 157 ~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~-~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~l 235 (1089)
.+.. ..++||+.++|+.|+++|++++|+||..+..++..++ .+++. .+||.+++++++...||+|++|.++++++
T Consensus 88 ~~~~---~~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~~~~~l~~~~gl~-~~Fd~ii~~d~v~~~KP~p~~~~~a~~~l 163 (382)
T PLN02940 88 QWCN---IKALPGANRLIKHLKSHGVPMALASNSPRANIEAKISCHQGWK-ESFSVIVGGDEVEKGKPSPDIFLEAAKRL 163 (382)
T ss_pred HHcc---CCCCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhccChH-hhCCEEEehhhcCCCCCCHHHHHHHHHHc
Confidence 4432 3689999999999999999999999999999988887 68996 99999999999999999999999999999
Q ss_pred CCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccCCHHH
Q 001380 236 NVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLND 293 (1089)
Q Consensus 236 gv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~i~~ 293 (1089)
|++|++|+||||+..|+++|+++||++|+|.++.... .....+++++.++.++....
T Consensus 164 gv~p~~~l~VGDs~~Di~aA~~aGi~~I~v~~g~~~~-~~~~~ad~~i~sl~el~~~~ 220 (382)
T PLN02940 164 NVEPSNCLVIEDSLPGVMAGKAAGMEVIAVPSIPKQT-HLYSSADEVINSLLDLQPEK 220 (382)
T ss_pred CCChhHEEEEeCCHHHHHHHHHcCCEEEEECCCCcch-hhccCccEEeCCHhHcCHHH
Confidence 9999999999999999999999999999999875322 23457999999999985444
No 19
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=99.92 E-value=1e-23 Score=223.25 Aligned_cols=200 Identities=27% Similarity=0.407 Sum_probs=165.6
Q ss_pred EEEecCCcccCCchHHHHHHHHHHHH-cCCC-CCHHhHhhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHhc
Q 001380 82 VLFDMDGVLCNSEEPSRRAAVDVFAE-MGVE-VTVEDFLPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIYLDKYA 159 (1089)
Q Consensus 82 ViFD~DGTL~d~~~~~~~a~~~~~~~-~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (1089)
||||+||||+|+...+..++++++++ +|.+ .+.+++..+.+.....+.+. .+... . ....+...+.. +.
T Consensus 1 iiFDlDGTL~Ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----~~~~~---~-~~~~~~~~~~~-~~ 71 (205)
T TIGR01454 1 VVFDLDGVLVDSFAVMREAFAIAYREVVGDGPAPFEEYRRHLGRYFPDIMRI----MGLPL---E-MEEPFVRESYR-LA 71 (205)
T ss_pred CeecCcCccccCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHhCccHHHHHHH----cCCCH---H-HHHHHHHHHHH-hh
Confidence 69999999999999999999999998 4764 56677777777766555433 22221 1 11122222222 11
Q ss_pred CCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCC
Q 001380 160 KPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPT 239 (1089)
Q Consensus 160 ~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p 239 (1089)
....++||+.++|++|+++|++++|+||+....++..++++|+. .+|+.++++++....||++++|.++++++|+++
T Consensus 72 --~~~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~~l~-~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~ 148 (205)
T TIGR01454 72 --GEVEVFPGVPELLAELRADGVGTAIATGKSGPRARSLLEALGLL-PLFDHVIGSDEVPRPKPAPDIVREALRLLDVPP 148 (205)
T ss_pred --cccccCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHcCCh-hheeeEEecCcCCCCCCChHHHHHHHHHcCCCh
Confidence 23488999999999999999999999999999999999999996 999999999998889999999999999999999
Q ss_pred CcEEEEcCChhhHHHHHHcCCeEEEEcCCC-CHHHHhhcCCcEEecCcccCCHHHHH
Q 001380 240 SECIVIEDALAGVQAAKAAQMRCIAVTTTL-SEERLKEASPSLIRKEIGSVSLNDIL 295 (1089)
Q Consensus 240 ~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~-~~~~l~~~~~d~vi~dl~el~i~~ll 295 (1089)
++|+||||+.+|+++|+++||.++++.+|. +.+++.+.+|++++.++.++ .+++
T Consensus 149 ~~~l~igD~~~Di~aA~~~Gi~~i~~~~g~~~~~~l~~~~~~~~~~~~~~l--~~~~ 203 (205)
T TIGR01454 149 EDAVMVGDAVTDLASARAAGTATVAALWGEGDAGELLAARPDFLLRKPQSL--LALC 203 (205)
T ss_pred hheEEEcCCHHHHHHHHHcCCeEEEEEecCCChhhhhhcCCCeeeCCHHHH--HHHh
Confidence 999999999999999999999999999997 77778788999999999887 4444
No 20
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=99.91 E-value=1.8e-23 Score=225.12 Aligned_cols=215 Identities=24% Similarity=0.343 Sum_probs=176.1
Q ss_pred CCCceEEEEecCCcccCCchHHHHHHHHHHHHcCCC-CCHHhHhhhcCCCHHHHHHHHHhhcCCC--CCCHHHHHHHHHH
Q 001380 76 WGKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVE-VTVEDFLPFMGTGEANFLGGVASVKGVK--GFDSEAAKKRFFE 152 (1089)
Q Consensus 76 ~~~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 152 (1089)
.+++++|+||+||||+|+...+..++..+++++|.. .+.+.+..+.+.+...+........+.. ....+.....+.+
T Consensus 3 ~~~~~~iiFD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (226)
T PRK13222 3 FMDIRAVAFDLDGTLVDSAPDLAAAVNAALAALGLPPAGEERVRTWVGNGADVLVERALTWAGREPDEELLEKLRELFDR 82 (226)
T ss_pred CCcCcEEEEcCCcccccCHHHHHHHHHHHHHHCCCCCCCHHHHHHHhCccHHHHHHHHHhhccCCccHHHHHHHHHHHHH
Confidence 356899999999999999999999999999999987 4666777777777766666554432211 1122333344444
Q ss_pred HHHHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHH
Q 001380 153 IYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSAS 232 (1089)
Q Consensus 153 ~~~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l 232 (1089)
.|....... ..++||+.++|+.|++.|++++|+||+....++.+++++++. .+|+.++++++....||+|++|+.++
T Consensus 83 ~~~~~~~~~--~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~-~~f~~~~~~~~~~~~kp~~~~~~~~~ 159 (226)
T PRK13222 83 HYAENVAGG--SRLYPGVKETLAALKAAGYPLAVVTNKPTPFVAPLLEALGIA-DYFSVVIGGDSLPNKKPDPAPLLLAC 159 (226)
T ss_pred HHHHhcccc--CccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCc-cCccEEEcCCCCCCCCcChHHHHHHH
Confidence 444433222 378999999999999999999999999999999999999996 99999999999889999999999999
Q ss_pred HHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCC-CHHHHhhcCCcEEecCcccCCHHHHH
Q 001380 233 KILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTL-SEERLKEASPSLIRKEIGSVSLNDIL 295 (1089)
Q Consensus 233 ~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~-~~~~l~~~~~d~vi~dl~el~i~~ll 295 (1089)
+++++++++|+||||+.+|+++|+++|+.+++|.+|. ...++...+|++++.++.++ ..++
T Consensus 160 ~~~~~~~~~~i~igD~~~Di~~a~~~g~~~i~v~~g~~~~~~~~~~~~~~~i~~~~~l--~~~l 221 (226)
T PRK13222 160 EKLGLDPEEMLFVGDSRNDIQAARAAGCPSVGVTYGYNYGEPIALSEPDVVIDHFAEL--LPLL 221 (226)
T ss_pred HHcCCChhheEEECCCHHHHHHHHHCCCcEEEECcCCCCccchhhcCCCEEECCHHHH--HHHH
Confidence 9999999999999999999999999999999999986 34556667899999999988 4444
No 21
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=99.91 E-value=3e-23 Score=216.58 Aligned_cols=186 Identities=27% Similarity=0.463 Sum_probs=156.5
Q ss_pred CCCCceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHH
Q 001380 75 KWGKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIY 154 (1089)
Q Consensus 75 ~~~~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (1089)
|+.++++|+||+||||+|+...+..++.++++++|...+.+++....+.....+...+....+.. ...+.....+.+.+
T Consensus 1 ~~~~~~~viFD~DGTLiDs~~~~~~a~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 79 (188)
T PRK10725 1 MYDRYAGLIFDMDGTILDTEPTHRKAWREVLGRYGLQFDEQAMVALNGSPTWRIAQAIIELNQAD-LDPHALAREKTEAV 79 (188)
T ss_pred CCCcceEEEEcCCCcCccCHHHHHHHHHHHHHHcCCCCCHHHHHHhcCCCHHHHHHHHHHHhCCC-CCHHHHHHHHHHHH
Confidence 35568999999999999999999999999999999988777777788888777766666554432 24444444444444
Q ss_pred HHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHH
Q 001380 155 LDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKI 234 (1089)
Q Consensus 155 ~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~ 234 (1089)
.+.+... ..++|+ .++|..|++. ++++|+||+....++..++++|+. .+||.|++++++...||+|++|..++++
T Consensus 80 ~~~~~~~--~~~~~~-~e~L~~L~~~-~~l~I~T~~~~~~~~~~l~~~~l~-~~fd~i~~~~~~~~~KP~p~~~~~~~~~ 154 (188)
T PRK10725 80 KSMLLDS--VEPLPL-IEVVKAWHGR-RPMAVGTGSESAIAEALLAHLGLR-RYFDAVVAADDVQHHKPAPDTFLRCAQL 154 (188)
T ss_pred HHHHhcc--CCCccH-HHHHHHHHhC-CCEEEEcCCchHHHHHHHHhCCcH-hHceEEEehhhccCCCCChHHHHHHHHH
Confidence 4443332 257786 5899999876 899999999999999999999996 9999999999999999999999999999
Q ss_pred cCCCCCcEEEEcCChhhHHHHHHcCCeEEEEc
Q 001380 235 LNVPTSECIVIEDALAGVQAAKAAQMRCIAVT 266 (1089)
Q Consensus 235 lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~ 266 (1089)
+|++|++||||||+.+|+++|+++|+++|+|.
T Consensus 155 ~~~~~~~~l~igDs~~di~aA~~aG~~~i~~~ 186 (188)
T PRK10725 155 MGVQPTQCVVFEDADFGIQAARAAGMDAVDVR 186 (188)
T ss_pred cCCCHHHeEEEeccHhhHHHHHHCCCEEEeec
Confidence 99999999999999999999999999999984
No 22
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=99.90 E-value=4.2e-23 Score=221.43 Aligned_cols=207 Identities=18% Similarity=0.278 Sum_probs=152.1
Q ss_pred CceEEEEecCCcccCCchHHHHHHHHH---HHHcCCCCCHHhHhhhcCCCHHHH-------HHHHHhhcCCCCCCHHHHH
Q 001380 78 KVSAVLFDMDGVLCNSEEPSRRAAVDV---FAEMGVEVTVEDFLPFMGTGEANF-------LGGVASVKGVKGFDSEAAK 147 (1089)
Q Consensus 78 ~~k~ViFD~DGTL~d~~~~~~~a~~~~---~~~~g~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 147 (1089)
|+++|+||+||||+|+...+..++.++ +.++|++.+.+++...+......+ ........... ...+ ..
T Consensus 1 ~~~~viFDlDGTL~ds~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~ 78 (221)
T TIGR02253 1 MIKAIFFDLDDTLIDTSGLAEKARRNAIEVLIEAGLNVDFEEAYEELLKLIKEYGSNYPTHFDYLIRRLWEE-YNPK-LV 78 (221)
T ss_pred CceEEEEeCCCCCcCCCCccCHHHHHHHHHHHHCCCcCCHHHHHHHHHHHHHHhccccCcchHHHHHHHhhh-cCHH-HH
Confidence 378999999999999998887777655 456777776665543222100000 00111111100 0111 11
Q ss_pred HHHHHHHHHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHH
Q 001380 148 KRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDI 227 (1089)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~ 227 (1089)
.++...+...... ...++||+.++|+.|+++|++++|+||+....++..++++|+. .+||.++++++.+..||+|++
T Consensus 79 ~~~~~~~~~~~~~--~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~~l~-~~f~~i~~~~~~~~~KP~~~~ 155 (221)
T TIGR02253 79 AAFVYAYHKLKFA--YLRVYPGVRDTLMELRESGYRLGIITDGLPVKQWEKLERLGVR-DFFDAVITSEEEGVEKPHPKI 155 (221)
T ss_pred HHHHHHHHHHHHH--hCCCCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhCChH-HhccEEEEeccCCCCCCCHHH
Confidence 2222222222211 2378999999999999999999999999999999999999997 999999999999999999999
Q ss_pred HHHHHHHcCCCCCcEEEEcCCh-hhHHHHHHcCCeEEEEcCCCC-HHH-HhhcCCcEEecCcccC
Q 001380 228 FLSASKILNVPTSECIVIEDAL-AGVQAAKAAQMRCIAVTTTLS-EER-LKEASPSLIRKEIGSV 289 (1089)
Q Consensus 228 ~~~~l~~lgv~p~~~v~VGD~~-~Di~aA~~aG~~~i~V~~g~~-~~~-l~~~~~d~vi~dl~el 289 (1089)
|..+++++|+++++||||||+. +|+.+|+++||++|+|.++.. ..+ .....+++++.++.+|
T Consensus 156 ~~~~~~~~~~~~~~~~~igDs~~~di~~A~~aG~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~el 220 (221)
T TIGR02253 156 FYAALKRLGVKPEEAVMVGDRLDKDIKGAKNLGMKTVWINQGKSSKMEDDVYPYPDYEISSLREL 220 (221)
T ss_pred HHHHHHHcCCChhhEEEECCChHHHHHHHHHCCCEEEEECCCCCcccccccccCCCeeeCcHHhh
Confidence 9999999999999999999998 999999999999999998763 222 2234688999988775
No 23
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=99.90 E-value=5.3e-23 Score=214.14 Aligned_cols=183 Identities=33% Similarity=0.458 Sum_probs=152.0
Q ss_pred EEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhhcCCCHHHHHHHHHhhcCCCCCC--HHHHHHHHHHHHHHHh
Q 001380 81 AVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVKGFD--SEAAKKRFFEIYLDKY 158 (1089)
Q Consensus 81 ~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 158 (1089)
+|+||+||||+|+...+..++.++++++|++.+.+....+.+.+....+..+....+..... ..+..+.+.+.|.+.+
T Consensus 1 ~iiFD~DGTL~ds~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (185)
T TIGR01990 1 AVIFDLDGVITDTAEYHYLAWKALADELGIPFDEEFNESLKGVSREDSLERILDLGGKKYSEEEKEELAERKNDYYVELL 80 (185)
T ss_pred CeEEcCCCccccChHHHHHHHHHHHHHcCCCCCHHHHHHhcCCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999998877778888888887777776655542211 1223344444454443
Q ss_pred cCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCC
Q 001380 159 AKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVP 238 (1089)
Q Consensus 159 ~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~ 238 (1089)
.......++||+.++|+.|+++|++++|+||+. ..+..++++++. .+|+.++++++....||+|++|..++++++++
T Consensus 81 ~~~~~~~~~pg~~~~L~~L~~~g~~~~i~s~~~--~~~~~l~~~~l~-~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~ 157 (185)
T TIGR01990 81 KELTPADVLPGIKNLLDDLKKNNIKIALASASK--NAPTVLEKLGLI-DYFDAIVDPAEIKKGKPDPEIFLAAAEGLGVS 157 (185)
T ss_pred HhcCCcccCccHHHHHHHHHHCCCeEEEEeCCc--cHHHHHHhcCcH-hhCcEEEehhhcCCCCCChHHHHHHHHHcCCC
Confidence 222223789999999999999999999999864 346789999997 99999999999999999999999999999999
Q ss_pred CCcEEEEcCChhhHHHHHHcCCeEEEEc
Q 001380 239 TSECIVIEDALAGVQAAKAAQMRCIAVT 266 (1089)
Q Consensus 239 p~~~v~VGD~~~Di~aA~~aG~~~i~V~ 266 (1089)
+++||||||+.+|+++|+++||++|+|.
T Consensus 158 ~~~~v~vgD~~~di~aA~~aG~~~i~v~ 185 (185)
T TIGR01990 158 PSECIGIEDAQAGIEAIKAAGMFAVGVG 185 (185)
T ss_pred HHHeEEEecCHHHHHHHHHcCCEEEecC
Confidence 9999999999999999999999999983
No 24
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=99.90 E-value=5.7e-23 Score=220.29 Aligned_cols=204 Identities=23% Similarity=0.363 Sum_probs=164.1
Q ss_pred CceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhH-hhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHH
Q 001380 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDF-LPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIYLD 156 (1089)
Q Consensus 78 ~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (1089)
++++|+||+||||+|+...+..++.++++++|+..+.+++ ..+.+.+...++..+...++... ..++....+.+.+..
T Consensus 3 ~~~~viFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 81 (221)
T PRK10563 3 QIEAVFFDCDGTLVDSEVICSRAYVTMFAEFGITLSLEEVFKRFKGVKLYEIIDIISKEHGVTL-AKAELEPVYRAEVAR 81 (221)
T ss_pred CCCEEEECCCCCCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHhcCCCHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHH
Confidence 4799999999999999999999999999999998775544 45567777778877777666543 344555555554444
Q ss_pred HhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCcc-EEEEcCCccCCCCCHHHHHHHHHHc
Q 001380 157 KYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFD-AIVSADAFENLKPAPDIFLSASKIL 235 (1089)
Q Consensus 157 ~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd-~i~~~~~~~~~KP~~~~~~~~l~~l 235 (1089)
.+... ..++||+.++|+.| +++++|+||+....++..++++++. .+|+ .++++++++..||+|++|..+++++
T Consensus 82 ~~~~~--~~~~~gv~~~L~~L---~~~~~ivTn~~~~~~~~~l~~~~l~-~~F~~~v~~~~~~~~~KP~p~~~~~a~~~~ 155 (221)
T PRK10563 82 LFDSE--LEPIAGANALLESI---TVPMCVVSNGPVSKMQHSLGKTGML-HYFPDKLFSGYDIQRWKPDPALMFHAAEAM 155 (221)
T ss_pred HHHcc--CCcCCCHHHHHHHc---CCCEEEEeCCcHHHHHHHHHhcChH-HhCcceEeeHHhcCCCCCChHHHHHHHHHc
Confidence 33322 37899999999999 3999999999999999999999996 9995 6888888889999999999999999
Q ss_pred CCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccC
Q 001380 236 NVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSV 289 (1089)
Q Consensus 236 gv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el 289 (1089)
|++|++|+||||+..||++|+++||+++++.++...... ...++.++.++.+|
T Consensus 156 ~~~p~~~l~igDs~~di~aA~~aG~~~i~~~~~~~~~~~-~~~~~~~~~~~~~l 208 (221)
T PRK10563 156 NVNVENCILVDDSSAGAQSGIAAGMEVFYFCADPHNKPI-DHPLVTTFTDLAQL 208 (221)
T ss_pred CCCHHHeEEEeCcHhhHHHHHHCCCEEEEECCCCCCcch-hhhhhHHHHHHHHH
Confidence 999999999999999999999999999999764322222 23445567777776
No 25
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=99.90 E-value=1.5e-22 Score=223.80 Aligned_cols=213 Identities=30% Similarity=0.457 Sum_probs=157.7
Q ss_pred CceEEEEecCCcccCCc-hHHHHHHHHHHHHcCC-C--CCHHhHhhh--cCCCHHHHHHHHHhhcCCC----------CC
Q 001380 78 KVSAVLFDMDGVLCNSE-EPSRRAAVDVFAEMGV-E--VTVEDFLPF--MGTGEANFLGGVASVKGVK----------GF 141 (1089)
Q Consensus 78 ~~k~ViFD~DGTL~d~~-~~~~~a~~~~~~~~g~-~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~----------~~ 141 (1089)
.+++|||||||||+|+. ..+..++.++++++|+ . .+.+.+..+ .+.+...+...+.. .++. ..
T Consensus 39 ~~k~VIFDlDGTLvDS~~~~~~~a~~~~l~~~G~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~e 117 (286)
T PLN02779 39 LPEALLFDCDGVLVETERDGHRVAFNDAFKEFGLRPVEWDVELYDELLNIGGGKERMTWYFNE-NGWPTSTIEKAPKDEE 117 (286)
T ss_pred CCcEEEEeCceeEEccccHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHccCCChHHHHHHHHH-cCCCccccccCCccch
Confidence 46999999999999999 9999999999999998 3 233333222 45444444333321 1111 10
Q ss_pred CHHHHHHHHH----HHHHHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCC--CCCccEEEEc
Q 001380 142 DSEAAKKRFF----EIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLP--VSMFDAIVSA 215 (1089)
Q Consensus 142 ~~~~~~~~~~----~~~~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~--~~~fd~i~~~ 215 (1089)
..+.....+. +.|.+.+.. ....++||+.++|+.|+++|++++|+||.....+..+++.++.. ..+|+.+ ++
T Consensus 118 ~~~~~~~~~~~~~~~~y~~~~~~-~~~~l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l~~~~~~~~~~~~~~v-~~ 195 (286)
T PLN02779 118 ERKELVDSLHDRKTELFKELIES-GALPLRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIVNTLLGPERAQGLDVF-AG 195 (286)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHh-cCCCchhhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhccccccCceEEE-ec
Confidence 1112222222 233332221 12378999999999999999999999999999999998877432 1334545 77
Q ss_pred CCccCCCCCHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCC-CHHHHhhcCCcEEecCcccCCHHHH
Q 001380 216 DAFENLKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTL-SEERLKEASPSLIRKEIGSVSLNDI 294 (1089)
Q Consensus 216 ~~~~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~-~~~~l~~~~~d~vi~dl~el~i~~l 294 (1089)
+++...||+|++|..+++++|++|++|+||||+.+|+++|+++||.+|+|.+|. ..+++ ..++++++++.++...++
T Consensus 196 ~~~~~~KP~p~~~~~a~~~~~~~p~~~l~IGDs~~Di~aA~~aG~~~i~v~~g~~~~~~l--~~ad~vi~~~~~l~~~~~ 273 (286)
T PLN02779 196 DDVPKKKPDPDIYNLAAETLGVDPSRCVVVEDSVIGLQAAKAAGMRCIVTKSSYTADEDF--SGADAVFDCLGDVPLEDF 273 (286)
T ss_pred cccCCCCCCHHHHHHHHHHhCcChHHEEEEeCCHHhHHHHHHcCCEEEEEccCCcccccc--CCCcEEECChhhcchhhh
Confidence 888889999999999999999999999999999999999999999999999986 44444 479999999999976555
Q ss_pred H
Q 001380 295 L 295 (1089)
Q Consensus 295 l 295 (1089)
-
T Consensus 274 ~ 274 (286)
T PLN02779 274 D 274 (286)
T ss_pred H
Confidence 3
No 26
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=99.90 E-value=1.3e-22 Score=211.13 Aligned_cols=183 Identities=34% Similarity=0.479 Sum_probs=150.5
Q ss_pred ceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhhcCCCHHHHHHHHHhhcCCCC--CCHHHHHHHHHHHHHH
Q 001380 79 VSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVKG--FDSEAAKKRFFEIYLD 156 (1089)
Q Consensus 79 ~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 156 (1089)
+++|+||+||||+|+...+..++..+++++|++.+.+....+.+.+....+..+....+... .........+.+.+.+
T Consensus 1 ~~~iiFD~DGTL~ds~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (185)
T TIGR02009 1 YKAVIFDMDGVIVDTAPLHAQAWKHLADKYGIEFDKQYNTSLGGLSREDILRAILKLRKPGLSLETIHQLAERKNELYRE 80 (185)
T ss_pred CCeEEEcCCCcccCChHHHHHHHHHHHHHcCCCCCHHHHHHcCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999877555566777777777777766543221 1112233333344443
Q ss_pred HhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcC
Q 001380 157 KYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILN 236 (1089)
Q Consensus 157 ~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lg 236 (1089)
.+. .....++||+.++|+.|+++|++++|+||+ ..++..++.+|+. .+|+.++++++....||+|++|.++++++|
T Consensus 81 ~~~-~~~~~~~~g~~~~l~~l~~~g~~i~i~S~~--~~~~~~l~~~~l~-~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~ 156 (185)
T TIGR02009 81 LLR-LTGAEVLPGIENFLKRLKKKGIAVGLGSSS--KNADRILAKLGLT-DYFDAIVDADEVKEGKPHPETFLLAAELLG 156 (185)
T ss_pred HHh-ccCCCCCcCHHHHHHHHHHcCCeEEEEeCc--hhHHHHHHHcChH-HHCCEeeehhhCCCCCCChHHHHHHHHHcC
Confidence 331 122479999999999999999999999998 6788999999996 999999999999999999999999999999
Q ss_pred CCCCcEEEEcCChhhHHHHHHcCCeEEEE
Q 001380 237 VPTSECIVIEDALAGVQAAKAAQMRCIAV 265 (1089)
Q Consensus 237 v~p~~~v~VGD~~~Di~aA~~aG~~~i~V 265 (1089)
+++++++||||+..|+++|+++|+++|+|
T Consensus 157 ~~~~~~v~IgD~~~di~aA~~~G~~~i~v 185 (185)
T TIGR02009 157 VSPNECVVFEDALAGVQAARAAGMFAVAV 185 (185)
T ss_pred CCHHHeEEEeCcHhhHHHHHHCCCeEeeC
Confidence 99999999999999999999999999875
No 27
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.89 E-value=8.4e-23 Score=197.89 Aligned_cols=125 Identities=54% Similarity=1.039 Sum_probs=115.9
Q ss_pred CCCccccCCCCC-ceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHH
Q 001380 431 PEFPAKLDWLNT-APLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNA 509 (1089)
Q Consensus 431 P~f~~~~~~~~g-~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~ 509 (1089)
|++...+.|+++ +++++ ++++||++||+||++||++|+.++|.|++++++|++.++.+|+|+++.++.+++.++++++
T Consensus 1 ~~~~~~~~w~~~~~~v~l-~~~~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~ 79 (126)
T cd03012 1 PEFEGILQWLNTDKPLSL-AQLRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSA 79 (126)
T ss_pred CCCcchhhhhcCCCccCH-HHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHH
Confidence 556666789988 58999 8899999999999999999999999999999999988999999998766667889999999
Q ss_pred HHHcCCccceeecCChhHHHHhCCCceeEEEEECCCCcEEEEecCCC
Q 001380 510 VLRYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEG 556 (1089)
Q Consensus 510 ~~~~~~~~~v~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~G~~ 556 (1089)
+++++++||++.|.+..+++.|++.++|++||||++|++++++.|++
T Consensus 80 ~~~~~~~~p~~~D~~~~~~~~~~v~~~P~~~vid~~G~v~~~~~G~~ 126 (126)
T cd03012 80 VLRYGITYPVANDNDYATWRAYGNQYWPALYLIDPTGNVRHVHFGEG 126 (126)
T ss_pred HHHcCCCCCEEECCchHHHHHhCCCcCCeEEEECCCCcEEEEEecCC
Confidence 99999999999999999999999999999999999999999999874
No 28
>PRK09449 dUMP phosphatase; Provisional
Probab=99.88 E-value=6.7e-22 Score=212.49 Aligned_cols=201 Identities=21% Similarity=0.320 Sum_probs=149.6
Q ss_pred CceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhhcCCCHHHHHHH------------------HHhhcCCC
Q 001380 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGG------------------VASVKGVK 139 (1089)
Q Consensus 78 ~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~ 139 (1089)
++|+|+||+||||+|.. ...++.++++++|+..+.+++..+...+. .++.. +....+.
T Consensus 2 ~~k~iiFDlDGTLid~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 77 (224)
T PRK09449 2 KYDWILFDADETLFHFD--AFAGLQRMFSRYGVDFTAEDFQDYQAVNK-PLWVDYQNGAITALQLQHTRFESWAEKLNV- 77 (224)
T ss_pred CccEEEEcCCCchhcch--hhHHHHHHHHHhCCCCcHHHHHHHHHHHH-HHHHHHHcCCCCHHHHHHHHHHHHHHHcCC-
Confidence 58999999999999843 46788889999998876555543311111 01111 1111111
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCcc
Q 001380 140 GFDSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFE 219 (1089)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~ 219 (1089)
... ++.+.+.+.+... ..++||+.++|+.|+ +|++++|+||+....++..++++|+. .+||.++++++.+
T Consensus 78 --~~~----~~~~~~~~~~~~~--~~~~~g~~~~L~~L~-~~~~~~i~Tn~~~~~~~~~l~~~~l~-~~fd~v~~~~~~~ 147 (224)
T PRK09449 78 --TPG----ELNSAFLNAMAEI--CTPLPGAVELLNALR-GKVKMGIITNGFTELQQVRLERTGLR-DYFDLLVISEQVG 147 (224)
T ss_pred --CHH----HHHHHHHHHHhhc--CccCccHHHHHHHHH-hCCeEEEEeCCcHHHHHHHHHhCChH-HHcCEEEEECccC
Confidence 111 2223333333322 368999999999999 57999999999999999999999996 9999999999999
Q ss_pred CCCCCHHHHHHHHHHcCCCC-CcEEEEcCCh-hhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccCCHHHHH
Q 001380 220 NLKPAPDIFLSASKILNVPT-SECIVIEDAL-AGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDIL 295 (1089)
Q Consensus 220 ~~KP~~~~~~~~l~~lgv~p-~~~v~VGD~~-~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~i~~ll 295 (1089)
..||+|++|.++++++|+.+ ++|+||||+. +|+++|+++||+++++.++.. .......|++++.++.+| .+++
T Consensus 148 ~~KP~p~~~~~~~~~~~~~~~~~~~~vgD~~~~Di~~A~~aG~~~i~~~~~~~-~~~~~~~~~~~i~~~~el--~~~l 222 (224)
T PRK09449 148 VAKPDVAIFDYALEQMGNPDRSRVLMVGDNLHSDILGGINAGIDTCWLNAHGR-EQPEGIAPTYQVSSLSEL--EQLL 222 (224)
T ss_pred CCCCCHHHHHHHHHHcCCCCcccEEEEcCCcHHHHHHHHHCCCcEEEECCCCC-CCCCCCCCeEEECCHHHH--HHHH
Confidence 99999999999999999854 8999999998 799999999999999986421 222234689999999887 4444
No 29
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=99.88 E-value=3.1e-22 Score=215.20 Aligned_cols=201 Identities=18% Similarity=0.308 Sum_probs=154.3
Q ss_pred ceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhhcCCC-------------HHHH----HHHHHhhcCCCCC
Q 001380 79 VSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTG-------------EANF----LGGVASVKGVKGF 141 (1089)
Q Consensus 79 ~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~-------------~~~~----~~~~~~~~~~~~~ 141 (1089)
+++|+||+||||+|+......++.++++++|+..+...+..+.... .... +..+....+...
T Consensus 1 ~k~viFD~DGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 79 (224)
T TIGR02254 1 YKTLLFDLDDTILDFQAAEALALRLLFEDQGIPLTEDMFAQYKEINQGLWRAYEEGKITKDEVVNTRFSALLKEYNTEA- 79 (224)
T ss_pred CCEEEEcCcCcccccchHHHHHHHHHHHHhCCCccHHHHHHHHHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHhCCCC-
Confidence 5799999999999999999999999999999876544332221111 1110 111111122110
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCC
Q 001380 142 DSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENL 221 (1089)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~ 221 (1089)
..+ .+.+.+.+.+... ..++||+.++|+.|+++ ++++|+||+....++..++++++. .+||.++++++.+..
T Consensus 80 ~~~----~~~~~~~~~~~~~--~~~~~g~~~~L~~l~~~-~~~~i~Sn~~~~~~~~~l~~~~l~-~~fd~i~~~~~~~~~ 151 (224)
T TIGR02254 80 DEA----LLNQKYLRFLEEG--HQLLPGAFELMENLQQK-FRLYIVTNGVRETQYKRLRKSGLF-PFFDDIFVSEDAGIQ 151 (224)
T ss_pred cHH----HHHHHHHHHHhcc--CeeCccHHHHHHHHHhc-CcEEEEeCCchHHHHHHHHHCCcH-hhcCEEEEcCccCCC
Confidence 111 2333333333222 37899999999999999 999999999999999999999996 999999999999999
Q ss_pred CCCHHHHHHHHHHc-CCCCCcEEEEcCCh-hhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccC
Q 001380 222 KPAPDIFLSASKIL-NVPTSECIVIEDAL-AGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSV 289 (1089)
Q Consensus 222 KP~~~~~~~~l~~l-gv~p~~~v~VGD~~-~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el 289 (1089)
||+|++|.++++++ |++|++|+||||+. +|+++|+++||.++++.++.... .....+++++.++.+|
T Consensus 152 KP~~~~~~~~~~~~~~~~~~~~v~igD~~~~di~~A~~~G~~~i~~~~~~~~~-~~~~~~~~~~~~~~el 220 (224)
T TIGR02254 152 KPDKEIFNYALERMPKFSKEEVLMIGDSLTADIKGGQNAGLDTCWMNPDMHPN-PDDIIPTYEIRSLEEL 220 (224)
T ss_pred CCCHHHHHHHHHHhcCCCchheEEECCCcHHHHHHHHHCCCcEEEECCCCCCC-CCCCCCceEECCHHHH
Confidence 99999999999999 99999999999998 89999999999999999864222 2345788999998877
No 30
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=99.88 E-value=1.3e-21 Score=206.79 Aligned_cols=180 Identities=27% Similarity=0.408 Sum_probs=140.2
Q ss_pred eEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhh------------------cCCCHHHHHHHH----HhhcC
Q 001380 80 SAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPF------------------MGTGEANFLGGV----ASVKG 137 (1089)
Q Consensus 80 k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~------------------~~~~~~~~~~~~----~~~~~ 137 (1089)
++|+||+||||+|+...+..++.++++++|++.+.+++... .+.+..+++..+ ....+
T Consensus 1 k~viFDlDGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 80 (203)
T TIGR02252 1 KLITFDAVGTLLALKEPVGEVYCEIARKYGVEVSPDELEQAFRRAFKAMSEAFPNFGFSSGLTPQQWWQKLVRDTFGRAG 80 (203)
T ss_pred CeEEEecCCceeeeCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 57999999999999999999999999999998765443211 134443333222 22222
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCC
Q 001380 138 VKGFDSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADA 217 (1089)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~ 217 (1089)
.. ..+. ..++.+.+.+.+.......++||+.++|+.|+++|++++|+||.... +...++.+|+. .+||.++++++
T Consensus 81 ~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~-~~~~l~~~~l~-~~fd~i~~s~~ 155 (203)
T TIGR02252 81 VP--DPES-FEKIFEELYSYFATPEPWQVYPDAIKLLKDLRERGLILGVISNFDSR-LRGLLEALGLL-EYFDFVVTSYE 155 (203)
T ss_pred CC--Cchh-HHHHHHHHHHHhcCCCcceeCcCHHHHHHHHHHCCCEEEEEeCCchh-HHHHHHHCCcH-HhcceEEeecc
Confidence 21 2222 22333334443433334478999999999999999999999998765 57889999996 99999999999
Q ss_pred ccCCCCCHHHHHHHHHHcCCCCCcEEEEcCCh-hhHHHHHHcCCeEEE
Q 001380 218 FENLKPAPDIFLSASKILNVPTSECIVIEDAL-AGVQAAKAAQMRCIA 264 (1089)
Q Consensus 218 ~~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~-~Di~aA~~aG~~~i~ 264 (1089)
.+..||+|++|.++++++|++|++|+||||+. +|+++|+++||++||
T Consensus 156 ~~~~KP~~~~~~~~~~~~~~~~~~~~~IgD~~~~Di~~A~~aG~~~i~ 203 (203)
T TIGR02252 156 VGAEKPDPKIFQEALERAGISPEEALHIGDSLRNDYQGARAAGWRALL 203 (203)
T ss_pred cCCCCCCHHHHHHHHHHcCCChhHEEEECCCchHHHHHHHHcCCeeeC
Confidence 99999999999999999999999999999998 899999999999885
No 31
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=99.87 E-value=2.4e-21 Score=229.44 Aligned_cols=209 Identities=18% Similarity=0.281 Sum_probs=165.9
Q ss_pred CCceEEEEecCCcccCCchHHHHHHHHHHHHcC------CCCCHHhHhhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHH
Q 001380 77 GKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMG------VEVTVEDFLPFMGTGEANFLGGVASVKGVKGFDSEAAKKRF 150 (1089)
Q Consensus 77 ~~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (1089)
+|+++||||+||||+|+...+..+|.+++++++ ...+.+.+....+.+....+..+....+.. ..+.....+
T Consensus 239 ~m~k~vIFDlDGTLiDs~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~l~~~~~~~--~~~~~~~~~ 316 (459)
T PRK06698 239 EMLQALIFDMDGTLFQTDKILELSLDDTFDHLRSLQLWDTVTPIDKYREIMGVPLPKVWEALLPDHSLE--IREQTDAYF 316 (459)
T ss_pred HhhhheeEccCCceecchhHHHHHHHHHHHHHhhhcccCCCCCHHHHHHHcCCChHHHHHHHhhhcchh--HHHHHHHHH
Confidence 467999999999999999999999999999974 223456777888888887777665432211 122333334
Q ss_pred HHHHHHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHH
Q 001380 151 FEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLS 230 (1089)
Q Consensus 151 ~~~~~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~ 230 (1089)
.+.+.+.+.. ....++||+.++|++|+++|++++|+||+..+.++..++.+++. .+|+.+++++++. .||+|++|..
T Consensus 317 ~~~~~~~~~~-~~~~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~~~~l~~~~l~-~~f~~i~~~d~v~-~~~kP~~~~~ 393 (459)
T PRK06698 317 LERLIENIKS-GKGALYPNVKEIFTYIKENNCSIYIASNGLTEYLRAIVSYYDLD-QWVTETFSIEQIN-SLNKSDLVKS 393 (459)
T ss_pred HHHhHHHHhh-cCCCcCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHCCcH-hhcceeEecCCCC-CCCCcHHHHH
Confidence 4444333221 12378999999999999999999999999999999999999996 9999999998874 4788899999
Q ss_pred HHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCC-HHHHhhcCCcEEecCcccCCHHHHHh
Q 001380 231 ASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLS-EERLKEASPSLIRKEIGSVSLNDILT 296 (1089)
Q Consensus 231 ~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~-~~~l~~~~~d~vi~dl~el~i~~ll~ 296 (1089)
++++++ +++|+||||+.+|+++|+++||.+|+|.++.. .+++ ..+++++.++.++ .+++.
T Consensus 394 al~~l~--~~~~v~VGDs~~Di~aAk~AG~~~I~v~~~~~~~~~~--~~~d~~i~~l~el--~~~l~ 454 (459)
T PRK06698 394 ILNKYD--IKEAAVVGDRLSDINAAKDNGLIAIGCNFDFAQEDEL--AQADIVIDDLLEL--KGILS 454 (459)
T ss_pred HHHhcC--cceEEEEeCCHHHHHHHHHCCCeEEEEeCCCCccccc--CCCCEEeCCHHHH--HHHHH
Confidence 999875 68999999999999999999999999999863 3333 3689999999887 55553
No 32
>PLN02811 hydrolase
Probab=99.87 E-value=3.8e-21 Score=205.59 Aligned_cols=203 Identities=23% Similarity=0.312 Sum_probs=161.6
Q ss_pred cCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhhcCCCHHHHHHHHHhhcCCCCC-CHHHHHHHHHHHHHHHhcCCCCC
Q 001380 86 MDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVKGF-DSEAAKKRFFEIYLDKYAKPNSG 164 (1089)
Q Consensus 86 ~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 164 (1089)
|||||+|+...+..+|.++++++|+..+.+.+..+.+.+....+..+....++... ..+.........+.... .. .
T Consensus 1 ~DGTL~Ds~~~~~~a~~~~~~~~g~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~ 77 (220)
T PLN02811 1 MDGLLLDTEKFYTEVQEKILARYGKTFDWSLKAKMMGKKAIEAARIFVEESGLSDSLSPEDFLVEREAMLQDLF-PT--S 77 (220)
T ss_pred CCCcceecHHHHHHHHHHHHHHcCCCCCHHHHHHccCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH-hh--C
Confidence 79999999999999999999999999887777778888887777777665555421 23333333333333222 22 3
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCChHhHHH-HHHHCCCCCCCccEEEEcC--CccCCCCCHHHHHHHHHHcC---CC
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSADRIKVDA-NLAAAGLPVSMFDAIVSAD--AFENLKPAPDIFLSASKILN---VP 238 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~-~l~~~gl~~~~fd~i~~~~--~~~~~KP~~~~~~~~l~~lg---v~ 238 (1089)
.++||+.++|+.|+++|++++|+||..+..... .++..++. .+|+.+++++ ++...||+|++|..++++++ ++
T Consensus 78 ~l~~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~~~l~-~~f~~i~~~~~~~~~~~KP~p~~~~~a~~~~~~~~~~ 156 (220)
T PLN02811 78 DLMPGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRHGELF-SLMHHVVTGDDPEVKQGKPAPDIFLAAARRFEDGPVD 156 (220)
T ss_pred CCCccHHHHHHHHHHCCCcEEEEeCCchhhHHHHHcccHHHH-hhCCEEEECChhhccCCCCCcHHHHHHHHHhCCCCCC
Confidence 789999999999999999999999988765554 34445775 8999999999 88889999999999999997 99
Q ss_pred CCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccCCHHH
Q 001380 239 TSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLND 293 (1089)
Q Consensus 239 p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~i~~ 293 (1089)
+++|+||||+..|+++|+++||++|+|.++....... .++++++.++.++....
T Consensus 157 ~~~~v~IgDs~~di~aA~~aG~~~i~v~~~~~~~~~~-~~~d~vi~~~~e~~~~~ 210 (220)
T PLN02811 157 PGKVLVFEDAPSGVEAAKNAGMSVVMVPDPRLDKSYC-KGADQVLSSLLDFKPEE 210 (220)
T ss_pred ccceEEEeccHhhHHHHHHCCCeEEEEeCCCCcHhhh-hchhhHhcCHhhCCHHH
Confidence 9999999999999999999999999998876332233 37899999999985444
No 33
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.86 E-value=2.2e-21 Score=200.62 Aligned_cols=138 Identities=25% Similarity=0.298 Sum_probs=120.7
Q ss_pred CCCCCCCCCccccCCCC--Cceeeccccc-CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChh
Q 001380 425 KTTPIVPEFPAKLDWLN--TAPLQFRRDL-KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEK 501 (1089)
Q Consensus 425 ~~g~~~P~f~~~~~~~~--g~~~~l~~~~-~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~ 501 (1089)
.+|+++|+|++. +++ |+.+++ +++ +||++||+||++||++|+.++|.|+++++ +++.||+|+. ++
T Consensus 40 ~~g~~~p~f~l~--~~~g~g~~~~~-~~~~~gk~vvv~FwatwC~~C~~e~p~l~~l~~----~~~~vi~v~~-----~~ 107 (185)
T PRK15412 40 LIGKPVPKFRLE--SLENPGQFYQA-DVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSA----QGIRVVGMNY-----KD 107 (185)
T ss_pred hcCCCCCCcCCc--cCCCCCccccH-HHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHH----cCCEEEEEEC-----CC
Confidence 478999999965 445 466666 554 89999999999999999999999998865 3789999964 56
Q ss_pred cHHHHHHHHHHcCCccce-eecCChhHHHHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHHHhcc
Q 001380 502 DLEAIRNAVLRYGISHPV-VNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALLFYGK 574 (1089)
Q Consensus 502 ~~~~~~~~~~~~~~~~~v-~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~~~~~ 574 (1089)
+.+++++|+++++++|++ +.|.+..+++.|+|.++|++|+||++|+|++++.|..+.+.+++.|+.+++....
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~~~~~~ 181 (185)
T PRK15412 108 DRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAPETFLIDGNGIIRYRHAGDLNPRVWESEIKPLWEKYSK 181 (185)
T ss_pred CHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcCCeEEEECCCceEEEEEecCCCHHHHHHHHHHHHHHHHh
Confidence 778899999999999984 7899999999999999999999999999999999999999999999999987653
No 34
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.86 E-value=1.5e-21 Score=205.29 Aligned_cols=145 Identities=17% Similarity=0.221 Sum_probs=122.2
Q ss_pred cCCCCCCCCCCccccCCCCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCC--Ch
Q 001380 423 NRKTTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFD--NE 500 (1089)
Q Consensus 423 ~~~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~--~~ 500 (1089)
....|+.+|+|+++ +++|+.+++ ++++||++||+||++||++|+.++|.|++++++|+++|+.||+|+++.+. ..
T Consensus 72 ~~~~g~~aPdF~l~--d~~G~~vsL-sd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~ 148 (236)
T PLN02399 72 RAATEKSVHDFTVK--DIDGKDVAL-SKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEP 148 (236)
T ss_pred chhcCCCCCceEEE--CCCCCEEeH-HHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCC
Confidence 34578999999964 569999999 99999999999999999999999999999999999999999999986543 23
Q ss_pred hcHHHHHHHH-HHcCCccceee--cCCh-hHHHHhC-------------CCceeEEEEECCCCcEEEEecCCCchhhHHH
Q 001380 501 KDLEAIRNAV-LRYGISHPVVN--DGDM-NLWRELG-------------VNSWPTFAVVGPNGKLLAQLAGEGHRKDLDD 563 (1089)
Q Consensus 501 ~~~~~~~~~~-~~~~~~~~v~~--d~~~-~l~~~~~-------------v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~ 563 (1089)
++.+++++|+ ++++++||++. |.++ .++..|+ +.+.|++||||++|+|+.++.|..+.+++++
T Consensus 149 ~s~~ei~~f~~~~~g~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~ 228 (236)
T PLN02399 149 GSNPEIKQFACTRFKAEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEK 228 (236)
T ss_pred CCHHHHHHHHHHhcCCCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHH
Confidence 5678899998 68999999985 4433 3333332 3557999999999999999999999999999
Q ss_pred HHHHHHH
Q 001380 564 LVEAALL 570 (1089)
Q Consensus 564 ~l~~~l~ 570 (1089)
.|+++|+
T Consensus 229 ~I~~lL~ 235 (236)
T PLN02399 229 DIQKLLA 235 (236)
T ss_pred HHHHHhc
Confidence 9988874
No 35
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=99.86 E-value=3.3e-21 Score=202.85 Aligned_cols=179 Identities=25% Similarity=0.364 Sum_probs=132.1
Q ss_pred ceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCH-------Hh-H-hhhcCC--CH----HHHHHHHHhhcCCCCCCH
Q 001380 79 VSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTV-------ED-F-LPFMGT--GE----ANFLGGVASVKGVKGFDS 143 (1089)
Q Consensus 79 ~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~-------~~-~-~~~~~~--~~----~~~~~~~~~~~~~~~~~~ 143 (1089)
+|+|+||+||||+|+... ..++.+++...+..... +. . ....+. .. ...+..+....+... .
T Consensus 1 ik~viFD~dgTLiD~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~-~- 77 (198)
T TIGR01428 1 IKALVFDVYGTLFDVHSV-VERFAELYGGRGEALSQLWRQKQLEYSWLRTLMGPYADFWDLTREALRYLLGRLGLED-D- 77 (198)
T ss_pred CcEEEEeCCCcCccHHHH-HHHHHHHhCchHHHHHHHHHHHHHHHHHHHHccCCCcCHHHHHHHHHHHHHHHcCCCC-C-
Confidence 478999999999998864 44444444332221110 00 0 011111 11 122333444444431 1
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCC
Q 001380 144 EAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKP 223 (1089)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP 223 (1089)
....+.+.+.+ .. ..++||+.++|++|+++|++++|+||+....++..++++|+. .+||.++++++++..||
T Consensus 78 ~~~~~~~~~~~----~~---~~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~gl~-~~fd~i~~s~~~~~~KP 149 (198)
T TIGR01428 78 ESAADRLAEAY----LR---LPPHPDVPAGLRALKERGYRLAILSNGSPAMLKSLVKHAGLD-DPFDAVLSADAVRAYKP 149 (198)
T ss_pred HHHHHHHHHHH----hc---CCCCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHCCCh-hhhheeEehhhcCCCCC
Confidence 22223333332 22 268999999999999999999999999999999999999996 99999999999999999
Q ss_pred CHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCC
Q 001380 224 APDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTT 268 (1089)
Q Consensus 224 ~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g 268 (1089)
+|++|.++++++|++|++|+||||+.+|+++|+++||.+|+|.++
T Consensus 150 ~~~~~~~~~~~~~~~p~~~~~vgD~~~Di~~A~~~G~~~i~v~r~ 194 (198)
T TIGR01428 150 APQVYQLALEALGVPPDEVLFVASNPWDLGGAKKFGFKTAWVNRP 194 (198)
T ss_pred CHHHHHHHHHHhCCChhhEEEEeCCHHHHHHHHHCCCcEEEecCC
Confidence 999999999999999999999999999999999999999999875
No 36
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=99.86 E-value=3.7e-21 Score=205.48 Aligned_cols=106 Identities=17% Similarity=0.259 Sum_probs=99.6
Q ss_pred CCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCcEE
Q 001380 164 GIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECI 243 (1089)
Q Consensus 164 ~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~v 243 (1089)
..++||+.++|+.|+++|++++|+||+.++.++..++.+|+. .+|+.++++++++..||+|++|..+++++|++|++|+
T Consensus 92 ~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l~~~~l~-~~fd~iv~s~~~~~~KP~p~~~~~~~~~~~~~p~~~l 170 (224)
T PRK14988 92 AVLREDTVPFLEALKASGKRRILLTNAHPHNLAVKLEHTGLD-AHLDLLLSTHTFGYPKEDQRLWQAVAEHTGLKAERTL 170 (224)
T ss_pred CCcCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHHHHCCcH-HHCCEEEEeeeCCCCCCCHHHHHHHHHHcCCChHHEE
Confidence 378999999999999999999999999999999999999996 9999999999999999999999999999999999999
Q ss_pred EEcCChhhHHHHHHcCCeE-EEEcCCCC
Q 001380 244 VIEDALAGVQAAKAAQMRC-IAVTTTLS 270 (1089)
Q Consensus 244 ~VGD~~~Di~aA~~aG~~~-i~V~~g~~ 270 (1089)
||||+..|+++|+++||++ ++|..+.+
T Consensus 171 ~igDs~~di~aA~~aG~~~~~~v~~~~~ 198 (224)
T PRK14988 171 FIDDSEPILDAAAQFGIRYCLGVTNPDS 198 (224)
T ss_pred EEcCCHHHHHHHHHcCCeEEEEEeCCCC
Confidence 9999999999999999985 66877653
No 37
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.86 E-value=1.6e-21 Score=194.44 Aligned_cols=126 Identities=37% Similarity=0.616 Sum_probs=113.2
Q ss_pred CCCCCCCCCccccCCCCCceeecccccCCCEEEEEEecC-CCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcH
Q 001380 425 KTTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTY-CCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDL 503 (1089)
Q Consensus 425 ~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~-wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~ 503 (1089)
++|+++|+|++++.+.+|+++++ ++++||++||+||++ ||++|+.++|.|++++++|+++++.+|+|+. +++.
T Consensus 1 k~G~~~P~~~~~~~~~~g~~~~l-~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~-----~~~~ 74 (146)
T PF08534_consen 1 KVGDKAPDFSLKDLDLDGKPVSL-SDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSS-----DDDP 74 (146)
T ss_dssp STTSB--CCEEEEEETTSEEEEG-GGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEE-----SSSH
T ss_pred CCCCCCCCeEEEeecCCCCEecH-HHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecc-----cCCH
Confidence 47999999997654579999999 889999999999999 9999999999999999999999999999976 2333
Q ss_pred HHHHHHHHHcCCccceeecCChhHHHHhCCC---------ceeEEEEECCCCcEEEEecCCCc
Q 001380 504 EAIRNAVLRYGISHPVVNDGDMNLWRELGVN---------SWPTFAVVGPNGKLLAQLAGEGH 557 (1089)
Q Consensus 504 ~~~~~~~~~~~~~~~v~~d~~~~l~~~~~v~---------~~Pt~~lid~~G~i~~~~~G~~~ 557 (1089)
. +++++++++++|+++.|.+..+++.|++. ++|+++|||++|+|++.+.|...
T Consensus 75 ~-~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 75 P-VREFLKKYGINFPVLSDPDGALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRHVGPDP 136 (146)
T ss_dssp H-HHHHHHHTTTTSEEEEETTSHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred H-HHHHHHhhCCCceEEechHHHHHHHhCCccccccccCCeecEEEEEECCCEEEEEEeCCCC
Confidence 3 99999999999999999999999999998 99999999999999999998876
No 38
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=99.86 E-value=4.1e-20 Score=217.91 Aligned_cols=301 Identities=20% Similarity=0.290 Sum_probs=229.1
Q ss_pred CCCCCCceEEEeecCCeEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECC
Q 001380 598 SPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTE 677 (1089)
Q Consensus 598 ~~l~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~ 677 (1089)
-.|..|..+|..+ +|.|||.|. +-|.++.++|++...+.-.. +...+-.-||++|-...|||+|+.
T Consensus 362 ~~L~aPvala~a~-DGSl~VGDf--NyIRRI~~dg~v~tIl~L~~-----------t~~sh~Yy~AvsPvdgtlyvSdp~ 427 (1899)
T KOG4659|consen 362 ISLFAPVALAYAP-DGSLIVGDF--NYIRRISQDGQVSTILTLGL-----------TDTSHSYYIAVSPVDGTLYVSDPL 427 (1899)
T ss_pred ceeeceeeEEEcC-CCcEEEccc--hheeeecCCCceEEEEEecC-----------CCccceeEEEecCcCceEEecCCC
Confidence 3577899999997 999999998 67999999999877554431 123456889999976669999999
Q ss_pred CCEEEEEECC-----CCeEEEEecCCCCCCC----CCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCC
Q 001380 678 NHALREIDFV-----NDTVRTLAGNGTKGSD----YQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDG 748 (1089)
Q Consensus 678 n~~I~~~d~~-----~g~v~~~ag~g~~~~~----~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g 748 (1089)
.++|+++..- .+.-..++|.|.+.-+ +.+|+.+...+|.+|.||++|..| .||++|. .+|+++| .+|
T Consensus 428 s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~PkGIa~dk~g-~lYfaD~--t~IR~iD-~~g 503 (1899)
T KOG4659|consen 428 SKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPKGIAFDKMG-NLYFADG--TRIRVID-TTG 503 (1899)
T ss_pred cceEEEeccCCccccccCeeEEeccCcCccccccccCcchhcccceeccCCceeEccCC-cEEEecc--cEEEEec-cCc
Confidence 9999988532 2456789999987443 345778888999999999999987 9999997 6788998 468
Q ss_pred eEEEEeCCCccccC-----CCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccc
Q 001380 749 VTRAFSGDGYERNL-----NGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFK 823 (1089)
Q Consensus 749 ~~~~~~g~g~~~~~-----~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~ 823 (1089)
.++++.|+...... ....-.+-.+.||..||++|..+.|||.| ++-|.+++.. +.+++++ |.|+.++--..
T Consensus 504 iIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld--~nvvlrit~~-~rV~Ii~-GrP~hC~~a~~ 579 (1899)
T KOG4659|consen 504 IISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLD--TNVVLRITVV-HRVRIIL-GRPTHCDLANA 579 (1899)
T ss_pred eEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeEEEee--cceEEEEccC-ccEEEEc-CCccccccCCC
Confidence 88888876533211 11112345688999999999888999998 5789999876 6676554 45665553221
Q ss_pred cCCCCCccccccccCceEEEEccCCcEEEEeCCCCE---EEEEeCCCCeEEEEeccCCC------C------CCCCcccc
Q 001380 824 FGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHK---IKKLDPASNRVSTLAGIGKA------G------FKDGAALA 888 (1089)
Q Consensus 824 ~g~~dg~~~~~~l~~P~gva~~~~G~lyVaD~~n~~---I~~~d~~~~~v~t~~g~g~~------g------~~~g~~~~ 888 (1089)
-......+.+..+-.|.+|++.++|.|||+++...| |+++..+ |++..++|..+. + ..+..+++
T Consensus 580 t~~~skla~H~tl~~~r~Iavg~~G~lyvaEsD~rriNrvr~~~td-g~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~ 658 (1899)
T KOG4659|consen 580 TSSASKLADHRTLLIQRDIAVGTDGALYVAESDGRRINRVRKLSTD-GTISILAGAKSPCSCDVAACCDCFSLRDVAATQ 658 (1899)
T ss_pred chhhhhhhhhhhhhhhhceeecCCceEEEEeccchhhhheEEeccC-ceEEEecCCCCCCCcccccCCccccccchhhhc
Confidence 112224566778888999999999999999998655 5566654 588888876432 1 11344789
Q ss_pred cccCCCceEEEccCCcEEEEECCCCEEEEEeCC
Q 001380 889 AQLSEPAGIIEAQNGNLFIADTNNNIIRYLDLN 921 (1089)
Q Consensus 889 ~~l~~P~gi~vd~~G~lyVad~~n~~I~~~~~~ 921 (1089)
+.|+.|..+||.|+|.+||||.+|-||+.+..+
T Consensus 659 A~lnsp~alaVsPdg~v~IAD~gN~rIr~Vs~~ 691 (1899)
T KOG4659|consen 659 AKLNSPYALAVSPDGDVIIADSGNSRIRKVSAR 691 (1899)
T ss_pred cccCCcceEEECCCCcEEEecCCchhhhhhhhc
Confidence 999999999999999999999999999987654
No 39
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=99.85 E-value=7e-21 Score=205.76 Aligned_cols=204 Identities=17% Similarity=0.188 Sum_probs=142.0
Q ss_pred CCCceEEEEecCCcccCCchHHHHHHHHHHHHcCCC------CCHHhHh---hhcCC-------CH----HHHHHHHHhh
Q 001380 76 WGKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVE------VTVEDFL---PFMGT-------GE----ANFLGGVASV 135 (1089)
Q Consensus 76 ~~~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~------~~~~~~~---~~~~~-------~~----~~~~~~~~~~ 135 (1089)
+.++++|+||+||||+|+...+..++.++++.++.. +....+. ..... .. ......+...
T Consensus 7 ~~~~k~iiFDlDGTL~D~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 86 (238)
T PRK10748 7 LGRISALTFDLDDTLYDNRPVILRTEQEALAFVQNYHPALRSFQNEDLQRLRQALREAEPEIYHDVTRWRWRAIEQAMLD 86 (238)
T ss_pred CCCceeEEEcCcccccCChHHHHHHHHHHHHHHHHhCcchhhCCHHHHHHHHHHHHHhCchhhCcHHHHHHHHHHHHHHH
Confidence 345799999999999999999898888877665211 1111111 10000 00 0112223333
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEc
Q 001380 136 KGVKGFDSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSA 215 (1089)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~ 215 (1089)
.+......+...+...+.+.... . ...++||+.++|+.|+++ ++++|+||++.. ++.+|+. .+||.++++
T Consensus 87 ~g~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~gv~~~L~~L~~~-~~l~i~Tn~~~~-----~~~~gl~-~~fd~i~~~ 156 (238)
T PRK10748 87 AGLSAEEASAGADAAMINFAKWR-S--RIDVPQATHDTLKQLAKK-WPLVAITNGNAQ-----PELFGLG-DYFEFVLRA 156 (238)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHh-h--cCCCCccHHHHHHHHHcC-CCEEEEECCCch-----HHHCCcH-HhhceeEec
Confidence 44321111111122222222221 1 137899999999999986 999999998765 4788996 999999999
Q ss_pred CCccCCCCCHHHHHHHHHHcCCCCCcEEEEcCCh-hhHHHHHHcCCeEEEEcCCCCH---HHHhhcCCcEEecCcccC
Q 001380 216 DAFENLKPAPDIFLSASKILNVPTSECIVIEDAL-AGVQAAKAAQMRCIAVTTTLSE---ERLKEASPSLIRKEIGSV 289 (1089)
Q Consensus 216 ~~~~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~-~Di~aA~~aG~~~i~V~~g~~~---~~l~~~~~d~vi~dl~el 289 (1089)
++.+..||+|++|..+++++|++|++|+||||+. .|+.+|+++||++++|..+... ..-....|++.+.++.+|
T Consensus 157 ~~~~~~KP~p~~~~~a~~~~~~~~~~~~~VGD~~~~Di~~A~~aG~~~i~v~~~~~~~~~~~~~~~~p~~~i~~l~el 234 (238)
T PRK10748 157 GPHGRSKPFSDMYHLAAEKLNVPIGEILHVGDDLTTDVAGAIRCGMQACWINPENGDLMQTWDSRLLPHIEISRLASL 234 (238)
T ss_pred ccCCcCCCcHHHHHHHHHHcCCChhHEEEEcCCcHHHHHHHHHCCCeEEEEcCCCccccccccccCCCCEEECCHHHH
Confidence 9999999999999999999999999999999995 9999999999999999885421 111224588888888776
No 40
>PLN02412 probable glutathione peroxidase
Probab=99.85 E-value=5.6e-21 Score=193.76 Aligned_cols=143 Identities=17% Similarity=0.209 Sum_probs=120.1
Q ss_pred CCCCCCCCccccCCCCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCC--hhcH
Q 001380 426 TTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDN--EKDL 503 (1089)
Q Consensus 426 ~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~--~~~~ 503 (1089)
..+.+|+|+++ +++|+.+++ ++++||++||+||++||++|+.++|.|++++++|+++|+.||||+++.+.. .++.
T Consensus 5 ~~~~~pdf~l~--d~~G~~v~l-~~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~ 81 (167)
T PLN02412 5 SPKSIYDFTVK--DIGGNDVSL-NQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSN 81 (167)
T ss_pred cCCCCCceEEE--CCCCCEEeH-HHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCH
Confidence 34779999964 569999999 899999999999999999999999999999999999999999999865432 2455
Q ss_pred HHH-HHHHHHcCCccceeec--CC-hhHHHHhC-------------CCceeEEEEECCCCcEEEEecCCCchhhHHHHHH
Q 001380 504 EAI-RNAVLRYGISHPVVND--GD-MNLWRELG-------------VNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVE 566 (1089)
Q Consensus 504 ~~~-~~~~~~~~~~~~v~~d--~~-~~l~~~~~-------------v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~ 566 (1089)
+++ +.++++++++||++.| .+ ...+..|+ +.+.|++||||++|+++.++.|..+.++++..|+
T Consensus 82 ~~~~~~~~~~~~~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~ 161 (167)
T PLN02412 82 EEIQQTVCTRFKAEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQ 161 (167)
T ss_pred HHHHHHHHHccCCCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHH
Confidence 555 5557999999999863 44 25555553 6678999999999999999999999999999999
Q ss_pred HHHHH
Q 001380 567 AALLF 571 (1089)
Q Consensus 567 ~~l~~ 571 (1089)
.++++
T Consensus 162 ~~l~~ 166 (167)
T PLN02412 162 NLLGQ 166 (167)
T ss_pred HHHhh
Confidence 88865
No 41
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.85 E-value=5.9e-19 Score=192.49 Aligned_cols=230 Identities=24% Similarity=0.374 Sum_probs=175.3
Q ss_pred CCceEEEeecCCeEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEE
Q 001380 602 FPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHAL 681 (1089)
Q Consensus 602 ~P~~vavd~~~g~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I 681 (1089)
+|.++++++.+++||++|..+++|+++++++.....+... .|.|++++..++.+||++. +.+
T Consensus 1 l~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~----------------~~~G~~~~~~~g~l~v~~~--~~~ 62 (246)
T PF08450_consen 1 LGEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLP----------------GPNGMAFDRPDGRLYVADS--GGI 62 (246)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESS----------------SEEEEEEECTTSEEEEEET--TCE
T ss_pred CCcceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecC----------------CCceEEEEccCCEEEEEEc--Cce
Confidence 3678999988999999999999999999998877665443 4899999943355999995 445
Q ss_pred EEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCC--------cEEEEEECCCCeEEEE
Q 001380 682 REIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQ--------HQIWEHSTVDGVTRAF 753 (1089)
Q Consensus 682 ~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~--------~~I~~~~~~~g~~~~~ 753 (1089)
..+|+.++.++++...-. ....+..|++++++++| .||+++.+. ++|+++++. +.+..+
T Consensus 63 ~~~d~~~g~~~~~~~~~~-----------~~~~~~~~ND~~vd~~G-~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~ 129 (246)
T PF08450_consen 63 AVVDPDTGKVTVLADLPD-----------GGVPFNRPNDVAVDPDG-NLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVV 129 (246)
T ss_dssp EEEETTTTEEEEEEEEET-----------TCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEE
T ss_pred EEEecCCCcEEEEeeccC-----------CCcccCCCceEEEcCCC-CEEEEecCCCccccccccceEEECCC-CeEEEE
Confidence 566999999998875310 01236789999999998 799999765 679999998 777666
Q ss_pred eCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCe-----EEEecCCCCCCCCccccCCCC
Q 001380 754 SGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGS-----RLLAGGDPIFPDNLFKFGDRD 828 (1089)
Q Consensus 754 ~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~-----~~~~g~~~~~~~~l~~~g~~d 828 (1089)
. ..+..|+||+++++++.|||+|+.+++|++++.+.... +.+.. +...
T Consensus 130 ~---------------~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~-----------~~~~- 182 (246)
T PF08450_consen 130 A---------------DGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFID-----------FPGG- 182 (246)
T ss_dssp E---------------EEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE------------SSS-
T ss_pred e---------------cCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEE-----------cCCC-
Confidence 5 34678999999999999999999999999999864322 11211 1111
Q ss_pred CccccccccCceEEEEccCCcEEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEc-cC-CcEE
Q 001380 829 GMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEA-QN-GNLF 906 (1089)
Q Consensus 829 g~~~~~~l~~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd-~~-G~ly 906 (1089)
...|.|+++|.+|+||||+..+++|.++|+++..+..+.- ....|+.+|+. ++ ++||
T Consensus 183 -------~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~~~~~i~~--------------p~~~~t~~~fgg~~~~~L~ 241 (246)
T PF08450_consen 183 -------PGYPDGLAVDSDGNLWVADWGGGRIVVFDPDGKLLREIEL--------------PVPRPTNCAFGGPDGKTLY 241 (246)
T ss_dssp -------SCEEEEEEEBTTS-EEEEEETTTEEEEEETTSCEEEEEE---------------SSSSEEEEEEESTTSSEEE
T ss_pred -------CcCCCcceEcCCCCEEEEEcCCCEEEEECCCccEEEEEcC--------------CCCCEEEEEEECCCCCEEE
Confidence 1359999999999999999999999999999766666653 23469999995 33 4699
Q ss_pred EEEC
Q 001380 907 IADT 910 (1089)
Q Consensus 907 Vad~ 910 (1089)
|+..
T Consensus 242 vTta 245 (246)
T PF08450_consen 242 VTTA 245 (246)
T ss_dssp EEEB
T ss_pred EEeC
Confidence 9863
No 42
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.85 E-value=1.1e-20 Score=196.54 Aligned_cols=150 Identities=13% Similarity=0.140 Sum_probs=123.5
Q ss_pred cCCCCCCCCCCccccCCCCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCC--h
Q 001380 423 NRKTTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDN--E 500 (1089)
Q Consensus 423 ~~~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~--~ 500 (1089)
....+..+|+|++ .+++|+.+++ ++++||+|||+|||+||++|+.++|.|++++++|+++|+.||+|+++.|.. .
T Consensus 12 ~~~~~~~~pdf~l--~d~~G~~vsL-~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~ 88 (199)
T PTZ00056 12 KDELRKSIYDYTV--KTLEGTTVPM-SSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEF 88 (199)
T ss_pred chhcCCCCCceEE--ECCCCCEEeH-HHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCC
Confidence 3456789999995 4669999999 899999999999999999999999999999999999999999998765422 2
Q ss_pred hcHHHHHHHHHHcCCccceeecC------ChhHH--------HHhCCC----ce---eEEEEECCCCcEEEEecCCCchh
Q 001380 501 KDLEAIRNAVLRYGISHPVVNDG------DMNLW--------RELGVN----SW---PTFAVVGPNGKLLAQLAGEGHRK 559 (1089)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~v~~d~------~~~l~--------~~~~v~----~~---Pt~~lid~~G~i~~~~~G~~~~~ 559 (1089)
++.+++++|+++++++||++.|. ...++ ..|++. .+ |++||||++|+|+.++.|..+.+
T Consensus 89 d~~e~~~~f~~~~~~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~ 168 (199)
T PTZ00056 89 PNTKDIRKFNDKNKIKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPL 168 (199)
T ss_pred CCHHHHHHHHHHcCCCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHH
Confidence 57889999999999999998652 22333 234332 22 47999999999999999999999
Q ss_pred hHHHHHHHHHHHhccc
Q 001380 560 DLDDLVEAALLFYGKK 575 (1089)
Q Consensus 560 ~l~~~l~~~l~~~~~~ 575 (1089)
.+++.|+.++++-.-+
T Consensus 169 ~l~~~I~~ll~~~~~~ 184 (199)
T PTZ00056 169 ELEKKIAELLGVKDYQ 184 (199)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999988864433
No 43
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=99.84 E-value=8.9e-21 Score=195.18 Aligned_cols=175 Identities=29% Similarity=0.503 Sum_probs=146.8
Q ss_pred EEEecCCcccCCchHHHHHHHH-HHHHcCCCCCHHhHhhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHhcC
Q 001380 82 VLFDMDGVLCNSEEPSRRAAVD-VFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIYLDKYAK 160 (1089)
Q Consensus 82 ViFD~DGTL~d~~~~~~~a~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (1089)
|+||+||||+++...+..++.. ++++++...+.+++....+.....++..+....+.. .....+.+.+... ..
T Consensus 1 iifD~dgtL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~---~~ 74 (176)
T PF13419_consen 1 IIFDLDGTLVDTDPAIFRALQRLALEEFGLEISAEELRELFGKSYEEALERLLERFGID---PEEIQELFREYNL---ES 74 (176)
T ss_dssp EEEESBTTTEEHHHHHHHHHHHHHHHHTTHHHHHHHHHHHTTSHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH---HG
T ss_pred cEEECCCCcEeCHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHhhhccchh---HHHHHHHhhhhhh---hh
Confidence 7999999999999988888887 477888887777777777777777777666654321 2222222222211 11
Q ss_pred CCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCC
Q 001380 161 PNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTS 240 (1089)
Q Consensus 161 ~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~ 240 (1089)
...++||+.++|+.|+++|++++++||+....++..++++|+. .+|+.++++++.+..||++++|+++++++|++|+
T Consensus 75 --~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~~~-~~f~~i~~~~~~~~~Kp~~~~~~~~~~~~~~~p~ 151 (176)
T PF13419_consen 75 --KLQPYPGVRELLERLKAKGIPLVIVSNGSRERIERVLERLGLD-DYFDEIISSDDVGSRKPDPDAYRRALEKLGIPPE 151 (176)
T ss_dssp --GEEESTTHHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHTTHG-GGCSEEEEGGGSSSSTTSHHHHHHHHHHHTSSGG
T ss_pred --ccchhhhhhhhhhhcccccceeEEeecCCcccccccccccccc-cccccccccchhhhhhhHHHHHHHHHHHcCCCcc
Confidence 2378999999999999999999999999999999999999996 9999999999999999999999999999999999
Q ss_pred cEEEEcCChhhHHHHHHcCCeEEEE
Q 001380 241 ECIVIEDALAGVQAAKAAQMRCIAV 265 (1089)
Q Consensus 241 ~~v~VGD~~~Di~aA~~aG~~~i~V 265 (1089)
+|+||||+..|+++|+++||.+|+|
T Consensus 152 ~~~~vgD~~~d~~~A~~~G~~~i~v 176 (176)
T PF13419_consen 152 EILFVGDSPSDVEAAKEAGIKTIWV 176 (176)
T ss_dssp GEEEEESSHHHHHHHHHTTSEEEEE
T ss_pred eEEEEeCCHHHHHHHHHcCCeEEeC
Confidence 9999999999999999999999987
No 44
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=99.84 E-value=1.5e-19 Score=187.23 Aligned_cols=211 Identities=32% Similarity=0.386 Sum_probs=181.0
Q ss_pred CCCCCceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 001380 74 SKWGKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEI 153 (1089)
Q Consensus 74 ~~~~~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (1089)
.++..+.+++||+||||+|++..+.+++.+++.++|..++++.....+|....+..+.+......+ ...++...+..+.
T Consensus 5 ~~~~~~~~~lfD~dG~lvdte~~y~~~~~~~~~~ygk~~~~~~~~~~mG~~~~eaa~~~~~~~~dp-~s~ee~~~e~~~~ 83 (222)
T KOG2914|consen 5 SLSLKVSACLFDMDGTLVDTEDLYTEAWQELLDRYGKPYPWDVKVKSMGKRTSEAARLFVKKLPDP-VSREEFNKEEEEI 83 (222)
T ss_pred ccccceeeEEEecCCcEEecHHHHHHHHHHHHHHcCCCChHHHHHHHcCCCHHHHHHHHHhhcCCC-CCHHHHHHHHHHH
Confidence 345568999999999999999999999999999999999999999999999999998888544443 3777777777777
Q ss_pred HHHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEE--cCCccCCCCCHHHHHHH
Q 001380 154 YLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVS--ADAFENLKPAPDIFLSA 231 (1089)
Q Consensus 154 ~~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~--~~~~~~~KP~~~~~~~~ 231 (1089)
..+.+... .++||+.+|+..|+.+|++++++|+.++...+..+++++--...|+.++. ..++..+||+|++|..+
T Consensus 84 ~~~~~~~~---~~~PGa~kLv~~L~~~gip~alat~s~~~~~~~k~~~~~~~~~~f~~~v~~d~~~v~~gKP~Pdi~l~A 160 (222)
T KOG2914|consen 84 LDRLFMNS---ILMPGAEKLVNHLKNNGIPVALATSSTSASFELKISRHEDIFKNFSHVVLGDDPEVKNGKPDPDIYLKA 160 (222)
T ss_pred HHHhcccc---ccCCcHHHHHHHHHhCCCCeeEEecCCcccHHHHHHHhhHHHHhcCCCeecCCccccCCCCCchHHHHH
Confidence 76666555 68999999999999999999999999999999999998722577888877 66788999999999999
Q ss_pred HHHcCCCC-CcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccC
Q 001380 232 SKILNVPT-SECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSV 289 (1089)
Q Consensus 232 l~~lgv~p-~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el 289 (1089)
++.+|..+ +.||+++|++..+++|++|||.+|+|... .........++.+++++.+.
T Consensus 161 ~~~l~~~~~~k~lVfeds~~Gv~aa~aagm~vi~v~~~-~~~~~~~~~~~~~~~~~~~~ 218 (222)
T KOG2914|consen 161 AKRLGVPPPSKCLVFEDSPVGVQAAKAAGMQVVGVATP-DLSNLFSAGATLILESLEDF 218 (222)
T ss_pred HHhcCCCCccceEEECCCHHHHHHHHhcCCeEEEecCC-Ccchhhhhccceeccccccc
Confidence 99999998 99999999999999999999999999883 33444455777887777665
No 45
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.83 E-value=1.1e-20 Score=189.32 Aligned_cols=131 Identities=21% Similarity=0.321 Sum_probs=109.8
Q ss_pred CCCCccccCCCCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCC--ChhcHHHHH
Q 001380 430 VPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFD--NEKDLEAIR 507 (1089)
Q Consensus 430 ~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~--~~~~~~~~~ 507 (1089)
+|+|++ .+++|+++++ ++++||+|||+||++||+ |+.++|.|++++++|+++++.+|+|+++.+. ..++.+.++
T Consensus 2 ~~~f~l--~d~~G~~v~l-~~~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~ 77 (152)
T cd00340 2 IYDFSV--KDIDGEPVSL-SKYKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIK 77 (152)
T ss_pred cceeEE--ECCCCCEEeH-HHhCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHH
Confidence 688885 4569999999 999999999999999999 9999999999999999889999999876542 125678999
Q ss_pred HHHHH-cCCccceeecC--Chh-HHHHhC--CCcee-----------EEEEECCCCcEEEEecCCCchhhHHHH
Q 001380 508 NAVLR-YGISHPVVNDG--DMN-LWRELG--VNSWP-----------TFAVVGPNGKLLAQLAGEGHRKDLDDL 564 (1089)
Q Consensus 508 ~~~~~-~~~~~~v~~d~--~~~-l~~~~~--v~~~P-----------t~~lid~~G~i~~~~~G~~~~~~l~~~ 564 (1089)
+|+++ ++++||++.|. ++. ..+.|+ +..+| ++||||++|+|++++.|..+.+.+++.
T Consensus 78 ~f~~~~~~~~fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~~~~~l~~~ 151 (152)
T cd00340 78 EFCETNYGVTFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTTDPEELEKD 151 (152)
T ss_pred HHHHHhcCCCceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCCCHHHHHhc
Confidence 99997 89999999763 333 455666 45666 899999999999999999887766543
No 46
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=99.83 E-value=9e-20 Score=191.57 Aligned_cols=177 Identities=22% Similarity=0.294 Sum_probs=135.6
Q ss_pred eEEEEecCCcccCCchHHHHHHHHHHHHcC-CCCCHHhHhhhcCCCH---------HHHHHHHHhhcC---CCCCCHHHH
Q 001380 80 SAVLFDMDGVLCNSEEPSRRAAVDVFAEMG-VEVTVEDFLPFMGTGE---------ANFLGGVASVKG---VKGFDSEAA 146 (1089)
Q Consensus 80 k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g-~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~---~~~~~~~~~ 146 (1089)
++|+|||||||+|+...+..++.++++++| ...+.+++..+.+.+. ..+...+..... ......+..
T Consensus 1 ~~viFD~DGTLiDs~~~~~~a~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (197)
T TIGR01548 1 QALVLDMDGVMADVSQSYRRAIIDTVEHFGGVSVTHADIDHTKLAGNANNDWQLTHRLVVDGLNSASSERVRDAPTLEAV 80 (197)
T ss_pred CceEEecCceEEechHHHHHHHHHHHHHHcCCCCCHHHHHHHHHccCccCchHHHHHHHHHhhhcccchhccCCccHHHH
Confidence 369999999999999999999999999997 5677777777766432 112221111110 112233444
Q ss_pred HHHHHHHHHHHhcC-------CCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCcc
Q 001380 147 KKRFFEIYLDKYAK-------PNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFE 219 (1089)
Q Consensus 147 ~~~~~~~~~~~~~~-------~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~ 219 (1089)
.+.+.+.|...... .....+.+++.++|+.|+++|++++|+||+.+..++..++.+|+. .+|+.++++++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~-~~f~~~~~~~~~~ 159 (197)
T TIGR01548 81 TAQFQALYQGVGYYRDLATLGLIEDETLLTPKGLLRELHRAPKGMAVVTGRPRKDAAKFLTTHGLE-ILFPVQIWMEDCP 159 (197)
T ss_pred HHHHHHHHcCCcccccccchhhhccccccCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHcCch-hhCCEEEeecCCC
Confidence 44444444321100 012245567799999999999999999999999999999999997 9999999999887
Q ss_pred CCCCCHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHc
Q 001380 220 NLKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAA 258 (1089)
Q Consensus 220 ~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~a 258 (1089)
. ||+|++|..+++++|+++++|+||||+.+|+++|+++
T Consensus 160 ~-KP~p~~~~~~~~~~~~~~~~~i~vGD~~~Di~aA~~a 197 (197)
T TIGR01548 160 P-KPNPEPLILAAKALGVEACHAAMVGDTVDDIITGRKA 197 (197)
T ss_pred C-CcCHHHHHHHHHHhCcCcccEEEEeCCHHHHHHHHhC
Confidence 7 9999999999999999999999999999999999875
No 47
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.83 E-value=4.3e-20 Score=213.96 Aligned_cols=153 Identities=18% Similarity=0.287 Sum_probs=133.1
Q ss_pred CCCCCCCCCCccccCCCCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcH
Q 001380 424 RKTTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDL 503 (1089)
Q Consensus 424 ~~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~ 503 (1089)
...++.+|+|++ .+++|+.+.+ + +||+|||+|||+||++|+.++|.|+++++++++.++.||+|+++..+.+++.
T Consensus 32 ~~~~~~lP~f~l--~D~dG~~v~l-s--kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~ 106 (521)
T PRK14018 32 ATVPHTLSTLKT--ADNRPASVYL-K--KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKD 106 (521)
T ss_pred ccccCCCCCeEe--ecCCCceeec-c--CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccH
Confidence 346788999985 5679999988 4 8999999999999999999999999999999877899999998766667778
Q ss_pred HHHHHHHHHcCC-ccceeecCChhHHHHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHH--------HHHHHhcc
Q 001380 504 EAIRNAVLRYGI-SHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVE--------AALLFYGK 574 (1089)
Q Consensus 504 ~~~~~~~~~~~~-~~~v~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~--------~~l~~~~~ 574 (1089)
++++++++..++ .+|++.|.+..+++.|+|.++|+++|||++|+++.++.|....+++.++|+ -+..+++.
T Consensus 107 ~~~~~~~~~~~y~~~pV~~D~~~~lak~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~~~~~~~~~~~~~~~~ 186 (521)
T PRK14018 107 GDFQKWYAGLDYPKLPVLTDNGGTLAQSLNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIRNPNADLGSLKHSYYKP 186 (521)
T ss_pred HHHHHHHHhCCCcccceeccccHHHHHHcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHHhhhhhHHhhhhhccc
Confidence 888899888776 479999999999999999999999999999999999999999999999998 44556666
Q ss_pred cccccCC
Q 001380 575 KKLLDNT 581 (1089)
Q Consensus 575 ~~~l~~~ 581 (1089)
+|++.+.
T Consensus 187 ~~q~~d~ 193 (521)
T PRK14018 187 DGQKKDS 193 (521)
T ss_pred cCCcccc
Confidence 6664443
No 48
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.82 E-value=8.6e-20 Score=186.81 Aligned_cols=135 Identities=24% Similarity=0.313 Sum_probs=116.6
Q ss_pred CCCCCCCCCCccccCCCCCc--eeeccccc-CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCCh
Q 001380 424 RKTTPIVPEFPAKLDWLNTA--PLQFRRDL-KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNE 500 (1089)
Q Consensus 424 ~~~g~~~P~f~~~~~~~~g~--~~~l~~~~-~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~ 500 (1089)
..+|.++|+|+++ +.+|+ .+++ +++ +||++||+||++||++|+.++|.+++++++ ++.+|+|+. +
T Consensus 34 ~~vG~~ap~f~l~--~~~G~~~~~~~-~~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~----~~~vi~V~~-----~ 101 (173)
T TIGR00385 34 ALIGKPVPAFPLA--ALREPLQAYTP-EAFIQGKPVLLNVWASWCPPCRAEHPYLNELAKD----GLPIVGVDY-----K 101 (173)
T ss_pred hhcCCCCCCcccc--ccCCCCcccCH-HHhcCCCEEEEEEECCcCHHHHHHHHHHHHHHHc----CCEEEEEEC-----C
Confidence 3578999999965 45676 5555 554 799999999999999999999999988753 699999964 4
Q ss_pred hcHHHHHHHHHHcCCccc-eeecCChhHHHHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHH
Q 001380 501 KDLEAIRNAVLRYGISHP-VVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALL 570 (1089)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~-v~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~ 570 (1089)
++.+++++|+++++++|+ ++.|++.++++.|++.++|++|+||++|++++++.|..+.+++++.+.+++.
T Consensus 102 ~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~~ 172 (173)
T TIGR00385 102 DQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYGAPETFLVDGNGVILYRHAGPLNNEVWTEGFLPAME 172 (173)
T ss_pred CChHHHHHHHHHcCCCCceEEECCCCchHHhcCCeeCCeEEEEcCCceEEEEEeccCCHHHHHHHHHHHhh
Confidence 566778899999999997 6689999999999999999999999999999999999999999999888763
No 49
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=99.82 E-value=2e-19 Score=191.30 Aligned_cols=183 Identities=22% Similarity=0.273 Sum_probs=128.2
Q ss_pred ceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHH----
Q 001380 79 VSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIY---- 154 (1089)
Q Consensus 79 ~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 154 (1089)
+++|+||+||||+|+.. ...+|...+...|+. ..+....+.+.....+.+.+. .+ ....++....+.+.+
T Consensus 2 ik~viFDldGtL~d~~~-~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~--~g--~~~~~~~~~~~~~~~~~~~ 75 (211)
T TIGR02247 2 IKAVIFDFGGVLLPSPG-VMRRWETERGLPGLK-DFIVTVNITGPDFNPWARTFE--RG--ELTAEAFDGLFRHEYGLRL 75 (211)
T ss_pred ceEEEEecCCceecCHH-HHHHHHHHcCCCCCc-cHHHHHHhcCCCCChHHHHHH--cC--CCCHHHHHHHHHHHhcccc
Confidence 58999999999999866 566666655555553 222233333333222222121 11 112222222222211
Q ss_pred ---------HHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHh--HHHHHHHCCCCCCCccEEEEcCCccCCCC
Q 001380 155 ---------LDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIK--VDANLAAAGLPVSMFDAIVSADAFENLKP 223 (1089)
Q Consensus 155 ---------~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~--~~~~l~~~gl~~~~fd~i~~~~~~~~~KP 223 (1089)
...+... ...++||+.++|+.|+++|++++|+||+.... ....+...++. .+||.++++++.+..||
T Consensus 76 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~l~-~~fd~v~~s~~~~~~KP 153 (211)
T TIGR02247 76 GHDVRIAPVFPLLYGE-NTKLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEALLPGDIM-ALFDAVVESCLEGLRKP 153 (211)
T ss_pred CCCcCchhhHHHHhcc-ccccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHhhhhhhH-hhCCEEEEeeecCCCCC
Confidence 0111111 24689999999999999999999999986543 33344556775 89999999999998999
Q ss_pred CHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCC
Q 001380 224 APDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTL 269 (1089)
Q Consensus 224 ~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~ 269 (1089)
+|++|..+++++|++|++|+||||+..|+++|+++||.+|+|.+..
T Consensus 154 ~p~~~~~~~~~~g~~~~~~l~i~D~~~di~aA~~aG~~~i~v~~~~ 199 (211)
T TIGR02247 154 DPRIYQLMLERLGVAPEECVFLDDLGSNLKPAAALGITTIKVSDEE 199 (211)
T ss_pred CHHHHHHHHHHcCCCHHHeEEEcCCHHHHHHHHHcCCEEEEECCHH
Confidence 9999999999999999999999999999999999999999998743
No 50
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=99.81 E-value=2.6e-19 Score=193.19 Aligned_cols=127 Identities=24% Similarity=0.377 Sum_probs=113.2
Q ss_pred CCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCcEE
Q 001380 164 GIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECI 243 (1089)
Q Consensus 164 ~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~v 243 (1089)
..++|++.++|+.|+++ ++++|+||+........++++|+. ++||.++++++.+..||++++|+.+++++|++|++++
T Consensus 98 ~~~~~~~~~~L~~l~~~-~~l~ilTNg~~~~~~~~l~~~gl~-~~Fd~v~~s~~~g~~KP~~~~f~~~~~~~g~~p~~~l 175 (229)
T COG1011 98 LPDYPEALEALKELGKK-YKLGILTNGARPHQERKLRQLGLL-DYFDAVFISEDVGVAKPDPEIFEYALEKLGVPPEEAL 175 (229)
T ss_pred CccChhHHHHHHHHHhh-ccEEEEeCCChHHHHHHHHHcCCh-hhhheEEEecccccCCCCcHHHHHHHHHcCCCcceEE
Confidence 37899999999999999 999999999999999999999996 9999999999999999999999999999999999999
Q ss_pred EEcCCh-hhHHHHHHcCCeEEEEcCCCCHH-HHhhcCCcEEecCcccCCHHHHH
Q 001380 244 VIEDAL-AGVQAAKAAQMRCIAVTTTLSEE-RLKEASPSLIRKEIGSVSLNDIL 295 (1089)
Q Consensus 244 ~VGD~~-~Di~aA~~aG~~~i~V~~g~~~~-~l~~~~~d~vi~dl~el~i~~ll 295 (1089)
||||+. +||.+|+++||++||+..+.... +.. ..+++.+.++.++ .+++
T Consensus 176 ~VgD~~~~di~gA~~~G~~~vwi~~~~~~~~~~~-~~~~~~i~~l~~l--~~~~ 226 (229)
T COG1011 176 FVGDSLENDILGARALGMKTVWINRGGKPLPDAL-EAPDYEISSLAEL--LDLL 226 (229)
T ss_pred EECCChhhhhHHHHhcCcEEEEECCCCCCCCCCc-cCCceEEcCHHHH--HHHH
Confidence 999999 89899999999999999865221 111 4678888888777 4444
No 51
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.81 E-value=1e-19 Score=182.61 Aligned_cols=134 Identities=16% Similarity=0.233 Sum_probs=111.3
Q ss_pred CCccccCCCCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCC--hhcHHHHHHH
Q 001380 432 EFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDN--EKDLEAIRNA 509 (1089)
Q Consensus 432 ~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~--~~~~~~~~~~ 509 (1089)
+|+ +.+++|+++++ ++++||++||+||++||++|+.++|.|++++++|+++++.+|+|++..+.. .++.+.+++|
T Consensus 4 ~f~--l~~~~G~~~~l-~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f 80 (153)
T TIGR02540 4 SFE--VKDARGRTVSL-EKYRGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESF 80 (153)
T ss_pred cce--eECCCCCEecH-HHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHH
Confidence 455 45679999999 999999999999999999999999999999999999899999998643322 3678899999
Q ss_pred HHH-cCCccceeec-----CChhHHHHhCC---CceeE----EEEECCCCcEEEEecCCCchhhHHHHHHHH
Q 001380 510 VLR-YGISHPVVND-----GDMNLWRELGV---NSWPT----FAVVGPNGKLLAQLAGEGHRKDLDDLVEAA 568 (1089)
Q Consensus 510 ~~~-~~~~~~v~~d-----~~~~l~~~~~v---~~~Pt----~~lid~~G~i~~~~~G~~~~~~l~~~l~~~ 568 (1089)
+++ ++++||++.| .+...+..|.+ ...|+ +||||++|+++.++.|....+.+.+.|+.+
T Consensus 81 ~~~~~~~~fp~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~l 152 (153)
T TIGR02540 81 ARRNYGVTFPMFSKIKILGSEAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITAL 152 (153)
T ss_pred HHHhcCCCCCccceEecCCCCCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHHh
Confidence 986 8999999865 23333334443 35897 999999999999999999988888887765
No 52
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.81 E-value=1.5e-19 Score=175.64 Aligned_cols=123 Identities=24% Similarity=0.287 Sum_probs=108.8
Q ss_pred CCCCCCccccCCCCC--ceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHH
Q 001380 428 PIVPEFPAKLDWLNT--APLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEA 505 (1089)
Q Consensus 428 ~~~P~f~~~~~~~~g--~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~ 505 (1089)
+++|+|++. +++| ..+++ ++++||++||+||++||++|+.++|.|+++.+++ ++.+|+|+. +++.++
T Consensus 1 ~~~p~f~~~--~~~g~~~~~~~-~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~---~~~vv~v~~-----~~~~~~ 69 (127)
T cd03010 1 KPAPAFSLP--ALPGPDKTLTS-ADLKGKPYLLNVWASWCAPCREEHPVLMALARQG---RVPIYGINY-----KDNPEN 69 (127)
T ss_pred CCCCCcccc--cccCCCccccH-HHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc---CcEEEEEEC-----CCCHHH
Confidence 368999854 4577 78888 8999999999999999999999999999998875 499999965 577889
Q ss_pred HHHHHHHcCCccc-eeecCChhHHHHhCCCceeEEEEECCCCcEEEEecCCCchhhH
Q 001380 506 IRNAVLRYGISHP-VVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDL 561 (1089)
Q Consensus 506 ~~~~~~~~~~~~~-v~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l 561 (1089)
+++|+++++++|+ ++.|.+.++++.|++.++|++|+||++|+++.++.|..+.+.+
T Consensus 70 ~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~P~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 70 ALAWLARHGNPYAAVGFDPDGRVGIDLGVYGVPETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred HHHHHHhcCCCCceEEECCcchHHHhcCCCCCCeEEEECCCceEEEEEeccCChHhc
Confidence 9999999999985 6689999999999999999999999999999999998876543
No 53
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.80 E-value=2.3e-19 Score=185.06 Aligned_cols=142 Identities=17% Similarity=0.220 Sum_probs=115.3
Q ss_pred CCCCCCCCccccCCCCCceeecccccCCCEE-EEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCCh--hc
Q 001380 426 TTPIVPEFPAKLDWLNTAPLQFRRDLKGKVV-VLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNE--KD 502 (1089)
Q Consensus 426 ~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~v-ll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~--~~ 502 (1089)
.+..+|+|+++ +++|+++++ ++++||++ |+.|||+||++|+.|+|.|++++++|+++++.||+|+++.+... .+
T Consensus 16 ~~~~~p~f~l~--d~~G~~vsL-s~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~ 92 (183)
T PTZ00256 16 PTKSFFEFEAI--DIDGQLVQL-SKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWD 92 (183)
T ss_pred CCCcccceEeE--cCCCCEEeH-HHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCC
Confidence 46789999964 569999999 99999965 45669999999999999999999999988999999987543222 35
Q ss_pred HHHHHHHHH-HcCCccceeec--CChh----HHH------------HhCCCceeE---EEEECCCCcEEEEecCCCchhh
Q 001380 503 LEAIRNAVL-RYGISHPVVND--GDMN----LWR------------ELGVNSWPT---FAVVGPNGKLLAQLAGEGHRKD 560 (1089)
Q Consensus 503 ~~~~~~~~~-~~~~~~~v~~d--~~~~----l~~------------~~~v~~~Pt---~~lid~~G~i~~~~~G~~~~~~ 560 (1089)
.+++++|++ +++++||++.| .++. ++. .+++.++|+ +||||++|+|+.++.|..+.+.
T Consensus 93 ~~~~~~f~~~~~~~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~~~~~ 172 (183)
T PTZ00256 93 EPEIKEYVQKKFNVDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVNPNE 172 (183)
T ss_pred HHHHHHHHHHhcCCCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCCCHHH
Confidence 688888875 78999999854 3332 331 236778994 6999999999999999998888
Q ss_pred HHHHHHHHHH
Q 001380 561 LDDLVEAALL 570 (1089)
Q Consensus 561 l~~~l~~~l~ 570 (1089)
+.+.|.++++
T Consensus 173 l~~~I~~ll~ 182 (183)
T PTZ00256 173 MIQDIEKLLN 182 (183)
T ss_pred HHHHHHHHhc
Confidence 8888887764
No 54
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.80 E-value=5.5e-19 Score=181.73 Aligned_cols=138 Identities=28% Similarity=0.512 Sum_probs=126.1
Q ss_pred cCCCCCCCCCCccccCCCCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhc
Q 001380 423 NRKTTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKD 502 (1089)
Q Consensus 423 ~~~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~ 502 (1089)
....|..+|+|++ .+.+|+.+++ ++++||+++|+||++||++|+.+++.|++++++|++.++.+|+|+. +++
T Consensus 34 ~~~~g~~~p~~~~--~~~~g~~~~l-~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~-----d~~ 105 (173)
T PRK03147 34 KVQVGKEAPNFVL--TDLEGKKIEL-KDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNV-----DET 105 (173)
T ss_pred ccCCCCCCCCcEe--ecCCCCEEeH-HHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEc-----CCC
Confidence 4568999999995 4669999999 8899999999999999999999999999999999988899999976 467
Q ss_pred HHHHHHHHHHcCCccceeecCChhHHHHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHH
Q 001380 503 LEAIRNAVLRYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAA 568 (1089)
Q Consensus 503 ~~~~~~~~~~~~~~~~v~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~ 568 (1089)
.+++++++++++++|+++.|.+.++.+.|++..+|++|+||++|+++..+.|....+++.+.++++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 106 ELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPLPTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred HHHHHHHHHHhCCCceEEECCcchHHHHcCCCCcCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence 789999999999999999999999999999999999999999999999999998888888877653
No 55
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.80 E-value=3.7e-19 Score=179.03 Aligned_cols=136 Identities=15% Similarity=0.210 Sum_probs=118.5
Q ss_pred ccCCCCCCCCCCccccCCCCCceeecccccCCCEEEEEEecC-CCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCCh
Q 001380 422 ENRKTTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTY-CCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNE 500 (1089)
Q Consensus 422 ~~~~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~-wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~ 500 (1089)
.....|+.+|+|+++ +++|+.+++ ++++||++||+||++ ||+.|+.+++.|++++++++++++.+|+|+.
T Consensus 2 ~~~~~g~~~p~f~l~--~~~G~~~~l-~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~------ 72 (154)
T PRK09437 2 NPLKAGDIAPKFSLP--DQDGEQVSL-TDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGIST------ 72 (154)
T ss_pred CcCCCCCcCCCcEee--CCCCCEEeH-HHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcC------
Confidence 345789999999964 568999999 889999999999976 7888999999999999999988999999975
Q ss_pred hcHHHHHHHHHHcCCccceeecCChhHHHHhCCCce------------eEEEEECCCCcEEEEecCCCchhhHHHHHH
Q 001380 501 KDLEAIRNAVLRYGISHPVVNDGDMNLWRELGVNSW------------PTFAVVGPNGKLLAQLAGEGHRKDLDDLVE 566 (1089)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~~v~~~------------Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~ 566 (1089)
++.+++++|+++++++|+++.|.++.+++.||+... |++||||++|+|++.+.|....+.+.+.++
T Consensus 73 d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~~~~~~~ 150 (154)
T PRK09437 73 DKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVFDKFKTSNHHDVVLD 150 (154)
T ss_pred CCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEEEcCCCcchhHHHHHH
Confidence 367889999999999999999999999999998654 788999999999999998766666555443
No 56
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.80 E-value=2e-19 Score=173.98 Aligned_cols=117 Identities=34% Similarity=0.609 Sum_probs=109.6
Q ss_pred CCCCCCCCccccCCCCCceeecccccCCCEEEEEEecC-CCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHH
Q 001380 426 TTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTY-CCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLE 504 (1089)
Q Consensus 426 ~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~-wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~ 504 (1089)
+|+++|+|+++ +.+|+.+++ ++++||++||.||++ ||+.|+.+++.|++++++|+++++.+|+|+. ++.+
T Consensus 1 vG~~~P~f~l~--~~~g~~~~l-~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~------d~~~ 71 (124)
T PF00578_consen 1 VGDKAPDFTLT--DSDGKTVSL-SDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGIST------DDPE 71 (124)
T ss_dssp TTSBGGCEEEE--TTTSEEEEG-GGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEES------SSHH
T ss_pred CcCCCCCcEeE--CCCCCEEEH-HHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeeccc------cccc
Confidence 68999999965 558999999 999999999999998 9999999999999999999998999999985 5666
Q ss_pred HHHHHHHHcCCccceeecCChhHHHHhCCC------ceeEEEEECCCCcEEEE
Q 001380 505 AIRNAVLRYGISHPVVNDGDMNLWRELGVN------SWPTFAVVGPNGKLLAQ 551 (1089)
Q Consensus 505 ~~~~~~~~~~~~~~v~~d~~~~l~~~~~v~------~~Pt~~lid~~G~i~~~ 551 (1089)
++++++++++++||++.|.+.++++.|++. ..|++||||++|+|+++
T Consensus 72 ~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~p~~~lid~~g~I~~~ 124 (124)
T PF00578_consen 72 EIKQFLEEYGLPFPVLSDPDGELAKAFGIEDEKDTLALPAVFLIDPDGKIRYA 124 (124)
T ss_dssp HHHHHHHHHTCSSEEEEETTSHHHHHTTCEETTTSEESEEEEEEETTSBEEEE
T ss_pred chhhhhhhhccccccccCcchHHHHHcCCccccCCceEeEEEEECCCCEEEeC
Confidence 999999999999999999999999999998 99999999999999974
No 57
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=99.80 E-value=1.2e-18 Score=180.85 Aligned_cols=177 Identities=27% Similarity=0.335 Sum_probs=124.1
Q ss_pred EEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHH------HHHHH
Q 001380 81 AVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVKGFDSEAAKKR------FFEIY 154 (1089)
Q Consensus 81 ~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 154 (1089)
+|+||+||||++++..+.. +.. ..+............. .......+.+...++... ........ ....+
T Consensus 1 ~vlFDlDgtLv~~~~~~~~-~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 75 (183)
T TIGR01509 1 AILFDLDGVLVDTSSAIEK-LVN--REEFPLVPDELGVSAV-GKLELALRRWKEKYGRTM-SAEDFYLLYENADIKQLFY 75 (183)
T ss_pred CeeeccCCceechHHHHHH-HHH--HHhCCCCcHHHHHHHH-HHHHHHhhccccccCCCC-CcHHHHHHHhHHHHHHHHH
Confidence 4899999999999887665 111 2222222222222221 112222222222233222 22221111 22222
Q ss_pred HHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHH
Q 001380 155 LDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKI 234 (1089)
Q Consensus 155 ~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~ 234 (1089)
........ ..++||+.++|+.|+++|++++|+||+.... ...+.++|+. .+|+.++++++.+..||+|++|+.++++
T Consensus 76 ~~~~~~~~-~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~~~~~~~~l~-~~f~~i~~~~~~~~~KP~~~~~~~~~~~ 152 (183)
T TIGR01509 76 DAILDEEK-LKPLPGVEPLLEALRARGKKLALLTNSPRDH-AVLVQELGLR-DLFDVVIFSGDVGRGKPDPDIYLLALKK 152 (183)
T ss_pred HHHHhccC-CccCcCHHHHHHHHHHCCCeEEEEeCCchHH-HHHHHhcCCH-HHCCEEEEcCCCCCCCCCHHHHHHHHHH
Confidence 22222211 3789999999999999999999999998887 6667779996 9999999999999999999999999999
Q ss_pred cCCCCCcEEEEcCChhhHHHHHHcCCeEEEE
Q 001380 235 LNVPTSECIVIEDALAGVQAAKAAQMRCIAV 265 (1089)
Q Consensus 235 lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V 265 (1089)
+|++|++|+||||+..|+++|+++|+.+|+|
T Consensus 153 ~~~~~~~~~~vgD~~~di~aA~~~G~~~i~v 183 (183)
T TIGR01509 153 LGLKPEECLFVDDSPAGIEAAKAAGMHTVLV 183 (183)
T ss_pred cCCCcceEEEEcCCHHHHHHHHHcCCEEEeC
Confidence 9999999999999999999999999999975
No 58
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=99.80 E-value=2.6e-19 Score=186.04 Aligned_cols=170 Identities=18% Similarity=0.221 Sum_probs=126.8
Q ss_pred eEEEEecCCcccCCchHHHHHHHHHHH-----HcCCCCCHH-hHh----hhcCCCHHHHHHHHHhhcCCCCCCHHHHHHH
Q 001380 80 SAVLFDMDGVLCNSEEPSRRAAVDVFA-----EMGVEVTVE-DFL----PFMGTGEANFLGGVASVKGVKGFDSEAAKKR 149 (1089)
Q Consensus 80 k~ViFD~DGTL~d~~~~~~~a~~~~~~-----~~g~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (1089)
++|+||+||||+|+...+..++.+.+. ++|++.... .+. ...+.+.... ..... ...+ .
T Consensus 1 ~~viFDlDGTL~ds~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~g~~~~~~----~~~~~---~~~~----~ 69 (184)
T TIGR01993 1 DVWFFDLDNTLYPHSAGIFLQIDRNITEFVAARLKLSEEEARVLRKDYYREYGTTLAGL----MILHE---IDAD----E 69 (184)
T ss_pred CeEEEeCCCCCCCCcccHHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHchHHHHH----HHhhC---CCHH----H
Confidence 479999999999999888888877654 456543221 111 1122211111 11111 1222 2
Q ss_pred HHHHHHHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccC----CCCCH
Q 001380 150 FFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFEN----LKPAP 225 (1089)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~----~KP~~ 225 (1089)
+.+.+.+.. ......++||+.++|+.|+ ++++|+||+....++..++.+|+. .+||.++++++.+. .||+|
T Consensus 70 ~~~~~~~~~-~~~~~~~~~g~~~~L~~L~---~~~~i~Tn~~~~~~~~~l~~~gl~-~~fd~i~~~~~~~~~~~~~KP~p 144 (184)
T TIGR01993 70 YLRYVHGRL-PYEKLKPDPELRNLLLRLP---GRKIIFTNGDRAHARRALNRLGIE-DCFDGIFCFDTANPDYLLPKPSP 144 (184)
T ss_pred HHHHHhccC-CHHhCCCCHHHHHHHHhCC---CCEEEEeCCCHHHHHHHHHHcCcH-hhhCeEEEeecccCccCCCCCCH
Confidence 333333211 1113368999999999998 579999999999999999999996 99999999998887 49999
Q ss_pred HHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEE
Q 001380 226 DIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAV 265 (1089)
Q Consensus 226 ~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V 265 (1089)
++|+++++++|++|++|+||||+..|+++|+++||++|+|
T Consensus 145 ~~~~~~~~~~~~~~~~~l~vgD~~~di~aA~~~G~~~i~v 184 (184)
T TIGR01993 145 QAYEKALREAGVDPERAIFFDDSARNIAAAKALGMKTVLV 184 (184)
T ss_pred HHHHHHHHHhCCCccceEEEeCCHHHHHHHHHcCCEEeeC
Confidence 9999999999999999999999999999999999999875
No 59
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.80 E-value=1.6e-19 Score=175.55 Aligned_cols=105 Identities=19% Similarity=0.239 Sum_probs=89.6
Q ss_pred CCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCC-------CCEEEEEEeCCCCCChhcHHHHHHHHHHc
Q 001380 441 NTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKD-------MPFTVVGVHSAKFDNEKDLEAIRNAVLRY 513 (1089)
Q Consensus 441 ~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~-------~~v~vi~v~~~~~~~~~~~~~~~~~~~~~ 513 (1089)
+...+++ ++++||+|+|+|||+||++|+.++|.|+++++++++ +++.+|+|+. +++.+.+++|++++
T Consensus 14 ~~~~~~l-s~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~-----D~~~~~~~~f~~~~ 87 (146)
T cd03008 14 DTEREIV-ARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSM-----DQSEQQQESFLKDM 87 (146)
T ss_pred hcccccH-HHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEEC-----CCCHHHHHHHHHHC
Confidence 3445677 899999999999999999999999999999987754 3799999975 45667899999999
Q ss_pred CCccc---eeecCChhHHHHhCCCceeEEEEECCCCcEEEE
Q 001380 514 GISHP---VVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQ 551 (1089)
Q Consensus 514 ~~~~~---v~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~ 551 (1089)
+++|+ +..+.+..+++.|++.++|++||||++|+|+.+
T Consensus 88 ~~~~~~~p~~~~~~~~l~~~y~v~~iPt~vlId~~G~Vv~~ 128 (146)
T cd03008 88 PKKWLFLPFEDEFRRELEAQFSVEELPTVVVLKPDGDVLAA 128 (146)
T ss_pred CCCceeecccchHHHHHHHHcCCCCCCEEEEECCCCcEEee
Confidence 98873 333345689999999999999999999999976
No 60
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=99.79 E-value=3.6e-18 Score=179.68 Aligned_cols=175 Identities=14% Similarity=0.180 Sum_probs=128.2
Q ss_pred eEEEEecCCcccCCchHHHH-HHHHHHHHcCCCCCHHhH-----------hhhc-CCCHHHHHHHHHhhcCCCCCCHHHH
Q 001380 80 SAVLFDMDGVLCNSEEPSRR-AAVDVFAEMGVEVTVEDF-----------LPFM-GTGEANFLGGVASVKGVKGFDSEAA 146 (1089)
Q Consensus 80 k~ViFD~DGTL~d~~~~~~~-a~~~~~~~~g~~~~~~~~-----------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (1089)
.+|+||+||||++....... .+.. ..+.. ...+ .... +.+..++...+....+... ..+..
T Consensus 1 ~~viFDldgvL~d~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~ 74 (199)
T PRK09456 1 MLYIFDLGNVIVDIDFNRVLGVWSD---LSRVP--LATLKKRFTMGEAFHQHERGEISDEAFAEALCHEMALSL-SYEQF 74 (199)
T ss_pred CEEEEeCCCccccCcHHHHHHHHHH---hcCCC--HHHHHHHHhcCcHHHHHhcCCCCHHHHHHHHHHHhCCCC-CHHHH
Confidence 37999999999997643221 1211 11111 1111 1111 2445556666666555432 22333
Q ss_pred HHHHHHHHHHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHC-CCCCCCccEEEEcCCccCCCCCH
Q 001380 147 KKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAA-GLPVSMFDAIVSADAFENLKPAP 225 (1089)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~-gl~~~~fd~i~~~~~~~~~KP~~ 225 (1089)
...+.+ .+ ..++||+.++|+.|+++|++++|+||+........+... ++. .+||.++++++++..||+|
T Consensus 75 ~~~~~~----~~-----~~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~~~~~~~~~l~-~~fd~v~~s~~~~~~KP~p 144 (199)
T PRK09456 75 AHGWQA----VF-----VALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEVR-AAADHIYLSQDLGMRKPEA 144 (199)
T ss_pred HHHHHH----HH-----hccCHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHhhchhHH-HhcCEEEEecccCCCCCCH
Confidence 333322 22 147999999999999999999999999887777666553 775 8899999999999999999
Q ss_pred HHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCC
Q 001380 226 DIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLS 270 (1089)
Q Consensus 226 ~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~ 270 (1089)
++|+++++++|++|++|+||||+..|+++|+++||+++++..+.+
T Consensus 145 ~~~~~~~~~~~~~p~~~l~vgD~~~di~aA~~aG~~~i~~~~~~~ 189 (199)
T PRK09456 145 RIYQHVLQAEGFSAADAVFFDDNADNIEAANALGITSILVTDKQT 189 (199)
T ss_pred HHHHHHHHHcCCChhHeEEeCCCHHHHHHHHHcCCEEEEecCCcc
Confidence 999999999999999999999999999999999999999988653
No 61
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=9.9e-19 Score=169.19 Aligned_cols=124 Identities=21% Similarity=0.314 Sum_probs=113.7
Q ss_pred cCCCCCCCCCCccccCCCCCceeecccccCCCEEEEEEe-cCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChh
Q 001380 423 NRKTTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFW-TYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEK 501 (1089)
Q Consensus 423 ~~~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fw-a~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~ 501 (1089)
...+|+++|||++..+ +|+.++| ++++||+|||+|| ..++|.|..|+..++++.++|.+.|.+|||||. +
T Consensus 3 ~l~~G~~aPdF~Lp~~--~g~~v~L-sd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~------D 73 (157)
T COG1225 3 MLKVGDKAPDFELPDQ--DGETVSL-SDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISP------D 73 (157)
T ss_pred cCCCCCcCCCeEeecC--CCCEEeh-HHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeC------C
Confidence 4678999999996554 9999999 9999999999999 689999999999999999999999999999984 7
Q ss_pred cHHHHHHHHHHcCCccceeecCChhHHHHhCCC------------ceeEEEEECCCCcEEEEecCC
Q 001380 502 DLEAIRNAVLRYGISHPVVNDGDMNLWRELGVN------------SWPTFAVVGPNGKLLAQLAGE 555 (1089)
Q Consensus 502 ~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~~v~------------~~Pt~~lid~~G~i~~~~~G~ 555 (1089)
+.+..++|.++++++|+.+.|.+.+++++|||. ..+++||||++|+|++.+...
T Consensus 74 s~~~~~~F~~k~~L~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~~~v 139 (157)
T COG1225 74 SPKSHKKFAEKHGLTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVWRKV 139 (157)
T ss_pred CHHHHHHHHHHhCCCceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEEecCC
Confidence 899999999999999999999999999999984 358999999999999998543
No 62
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.79 E-value=6.1e-19 Score=174.55 Aligned_cols=129 Identities=22% Similarity=0.380 Sum_probs=116.8
Q ss_pred CCCCCCccccCCCCCceeecccccCCCEEEEEEe-cCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHH
Q 001380 428 PIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFW-TYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAI 506 (1089)
Q Consensus 428 ~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fw-a~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~ 506 (1089)
+++|+|++. +.+|+.+++ ++++||++||+|| ++||+.|..+++.|++++++++++++.+|+|++ ++.+.+
T Consensus 1 ~~~p~f~l~--~~~g~~~~l-~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~------d~~~~~ 71 (140)
T cd03017 1 DKAPDFTLP--DQDGETVSL-SDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSP------DSVESH 71 (140)
T ss_pred CCCCCcccc--CCCCCEEeH-HHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcC------CCHHHH
Confidence 368999954 568999999 8999999999999 589999999999999999999888999999975 467889
Q ss_pred HHHHHHcCCccceeecCChhHHHHhCCCce---------eEEEEECCCCcEEEEecCCCchhhHHHHH
Q 001380 507 RNAVLRYGISHPVVNDGDMNLWRELGVNSW---------PTFAVVGPNGKLLAQLAGEGHRKDLDDLV 565 (1089)
Q Consensus 507 ~~~~~~~~~~~~v~~d~~~~l~~~~~v~~~---------Pt~~lid~~G~i~~~~~G~~~~~~l~~~l 565 (1089)
++|+++++++|+++.|.+..+++.||+... |++||||++|+|++.+.|....+.+.+.+
T Consensus 72 ~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~~~ 139 (140)
T cd03017 72 AKFAEKYGLPFPLLSDPDGKLAKAYGVWGEKKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEEVL 139 (140)
T ss_pred HHHHHHhCCCceEEECCccHHHHHhCCccccccccCCcceeEEEECCCCEEEEEEecCCccchHHHHh
Confidence 999999999999999999999999999988 99999999999999999988777776654
No 63
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=99.79 E-value=1.2e-18 Score=180.70 Aligned_cols=191 Identities=24% Similarity=0.318 Sum_probs=146.8
Q ss_pred CCCceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhhcC-------------------CCHHHHHHHHHhh-
Q 001380 76 WGKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMG-------------------TGEANFLGGVASV- 135 (1089)
Q Consensus 76 ~~~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~- 135 (1089)
.+++++|+||++|||+.........|.++.+++|+....+.+...+. .+..+++..+...
T Consensus 4 ~~~iravtfD~~~tLl~~~~~~~~~y~~i~~~~gl~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~l~~~~ww~~lv~~~ 83 (237)
T KOG3085|consen 4 LMRIRAVTFDAGGTLLATLPPVMEVYCEIAEAYGLEYDDSLIETIFRKDFKKMSEKGPFFGLYSGELTLSQWWPKLVEST 83 (237)
T ss_pred ccceEEEEEeCCCceeecCCccHHHHHHHHHHhCCCCCHHHHhHhhhHHHHhhcccCCcccccCCcccHHHHHHHHHHHH
Confidence 46789999999999999899999999999999999855544433322 2344444433222
Q ss_pred cCCCCCCHHHHHH-HHHHHHHHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEE
Q 001380 136 KGVKGFDSEAAKK-RFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVS 214 (1089)
Q Consensus 136 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~ 214 (1089)
++.......+... .+...+...+. ...+...+++.++++.||++|+.++++||.+. ..+.++..+++. .+||.++.
T Consensus 84 f~~~~~~~~~~~~~~~~~~~~s~~~-~~~~~~~~~~~~~lq~lR~~g~~l~iisN~d~-r~~~~l~~~~l~-~~fD~vv~ 160 (237)
T KOG3085|consen 84 FGKAGIDYEEELLENFSFRLFSTFA-PSAWKYLDGMQELLQKLRKKGTILGIISNFDD-RLRLLLLPLGLS-AYFDFVVE 160 (237)
T ss_pred hccccchhHHHHHhhhhhheecccc-ccCceeccHHHHHHHHHHhCCeEEEEecCCcH-HHHHHhhccCHH-Hhhhhhhh
Confidence 2222212111111 12222222222 23567889999999999999999999999655 455899999996 99999999
Q ss_pred cCCccCCCCCHHHHHHHHHHcCCCCCcEEEEcCCh-hhHHHHHHcCCeEEEEcCCC
Q 001380 215 ADAFENLKPAPDIFLSASKILNVPTSECIVIEDAL-AGVQAAKAAQMRCIAVTTTL 269 (1089)
Q Consensus 215 ~~~~~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~-~Di~aA~~aG~~~i~V~~g~ 269 (1089)
+.+.+..||+|++|+.+++++|+.|++|+||||.. ||+++|+++||++++|....
T Consensus 161 S~e~g~~KPDp~If~~al~~l~v~Pee~vhIgD~l~nD~~gA~~~G~~ailv~~~~ 216 (237)
T KOG3085|consen 161 SCEVGLEKPDPRIFQLALERLGVKPEECVHIGDLLENDYEGARNLGWHAILVDNSI 216 (237)
T ss_pred hhhhccCCCChHHHHHHHHHhCCChHHeEEecCccccccHhHHHcCCEEEEEcccc
Confidence 99999999999999999999999999999999999 99999999999999998654
No 64
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=99.79 E-value=5.8e-18 Score=199.99 Aligned_cols=254 Identities=24% Similarity=0.356 Sum_probs=191.7
Q ss_pred CCCceEEEeecCCeEEEEeCCCCEEEEEe------CCCCEEEEEecCCCCCC------CCC-CCCccccCCcceeEEeeC
Q 001380 601 KFPGKLAIDILNNRLFISDSNHNRIVVTD------LDGNFIVQIGSSGEEGL------RDG-SFDDATFNRPQGLAYNAK 667 (1089)
Q Consensus 601 ~~P~~vavd~~~g~L~vsd~~~~~I~~~~------~~g~~~~~i~~~g~~g~------~dG-~~~~~~f~~P~gla~d~~ 667 (1089)
.+-.-+|++|.+|.|||+|..+++|+++. +.++.....|. |+.+. .|| .+.+|++..|.||++|++
T Consensus 407 sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~-Ge~Clp~desCGDGalA~dA~L~~PkGIa~dk~ 485 (1899)
T KOG4659|consen 407 SHSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGD-GEVCLPADESCGDGALAQDAQLIFPKGIAFDKM 485 (1899)
T ss_pred cceeEEEecCcCceEEecCCCcceEEEeccCCccccccCeeEEecc-CcCccccccccCcchhcccceeccCCceeEccC
Confidence 45667999999999999999999999983 23444444443 45443 255 678899999999999999
Q ss_pred CCEEEEEECCCCEEEEEECCCCeEEEEecCCCCCC---CCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEE
Q 001380 668 KNLLYVADTENHALREIDFVNDTVRTLAGNGTKGS---DYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHS 744 (1089)
Q Consensus 668 g~~lyVaD~~n~~I~~~d~~~g~v~~~ag~g~~~~---~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~ 744 (1089)
|+ ||++| ..+||++| .+|.++++.|+..... .+.+........|.+|.++|++|-.+.|||-|. |.|.+++
T Consensus 486 g~-lYfaD--~t~IR~iD-~~giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld~--nvvlrit 559 (1899)
T KOG4659|consen 486 GN-LYFAD--GTRIRVID-TTGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLDT--NVVLRIT 559 (1899)
T ss_pred Cc-EEEec--ccEEEEec-cCceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeEEEeec--ceEEEEc
Confidence 98 99999 67899999 5899999987654322 233455566778999999999999999999985 8888888
Q ss_pred CCCCeEEEEeCCCccccCCC------CCCCCccccCCceEEEcCCCCEEEEEeCCCC---eEEEEEcCCCCeEEEecCC-
Q 001380 745 TVDGVTRAFSGDGYERNLNG------SSSLNTSFAQPSGISLSPDFMEIYVADSESS---SIRALNLKTGGSRLLAGGD- 814 (1089)
Q Consensus 745 ~~~g~~~~~~g~g~~~~~~g------~~~~~~~~~~P~glav~~~g~~lyvad~~~~---~I~~~~~~~~~~~~~~g~~- 814 (1089)
.. +.++.++|....-...+ .......+..+..|++.++| .|||+++... +||++..+ |....++|+.
T Consensus 560 ~~-~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G-~lyvaEsD~rriNrvr~~~td-g~i~ilaGa~S 636 (1899)
T KOG4659|consen 560 VV-HRVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTDG-ALYVAESDGRRINRVRKLSTD-GTISILAGAKS 636 (1899)
T ss_pred cC-ccEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecCCc-eEEEEeccchhhhheEEeccC-ceEEEecCCCC
Confidence 64 55557776543222222 11123445567999999999 9999998764 66777765 5777888862
Q ss_pred CCCCCC---ccccCCCCCccccccccCceEEEEccCCcEEEEeCCCCEEEEEe
Q 001380 815 PIFPDN---LFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLD 864 (1089)
Q Consensus 815 ~~~~~~---l~~~g~~dg~~~~~~l~~P~gva~~~~G~lyVaD~~n~~I~~~d 864 (1089)
+..++. --.|...|+.+.+|+|+.|.++|++|||.+||||.+|.||+++.
T Consensus 637 ~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg~v~IAD~gN~rIr~Vs 689 (1899)
T KOG4659|consen 637 PCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDGDVIIADSGNSRIRKVS 689 (1899)
T ss_pred CCCcccccCCccccccchhhhccccCCcceEEECCCCcEEEecCCchhhhhhh
Confidence 222221 12456678889999999999999999999999999999888763
No 65
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.79 E-value=1.6e-18 Score=177.49 Aligned_cols=142 Identities=22% Similarity=0.313 Sum_probs=121.3
Q ss_pred CCCCCCCccccCCCCCceeeccccc-CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCC--ChhcH
Q 001380 427 TPIVPEFPAKLDWLNTAPLQFRRDL-KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFD--NEKDL 503 (1089)
Q Consensus 427 g~~~P~f~~~~~~~~g~~~~l~~~~-~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~--~~~~~ 503 (1089)
|+.+|+|++ .+.+|+.+++ +++ +||++||+||++||+.|..+++.|++++++|+++++.+|+|+++... ..++.
T Consensus 1 g~~~p~f~l--~~~~g~~v~l-~~~~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~ 77 (171)
T cd02969 1 GSPAPDFSL--PDTDGKTYSL-ADFADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSP 77 (171)
T ss_pred CCcCCCccc--cCCCCCEEeH-HHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCH
Confidence 578999995 4568999999 887 99999999999999999999999999999999888999999874321 12578
Q ss_pred HHHHHHHHHcCCccceeecCChhHHHHhCCCceeEEEEECCCCcEEEEec---------CCCchhhHHHHHHHHHHH
Q 001380 504 EAIRNAVLRYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLA---------GEGHRKDLDDLVEAALLF 571 (1089)
Q Consensus 504 ~~~~~~~~~~~~~~~v~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~---------G~~~~~~l~~~l~~~l~~ 571 (1089)
+.+++++++++++|+++.|.+..+++.|++..+|++||||++|+|++... +..+.+.+.+.|+.+++.
T Consensus 78 ~~~~~~~~~~~~~~~~l~D~~~~~~~~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 154 (171)
T cd02969 78 ENMKAKAKEHGYPFPYLLDETQEVAKAYGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAG 154 (171)
T ss_pred HHHHHHHHHCCCCceEEECCchHHHHHcCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999998731 122446677777776653
No 66
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.78 E-value=1.9e-18 Score=175.45 Aligned_cols=134 Identities=16% Similarity=0.144 Sum_probs=112.7
Q ss_pred cCCCCCCCCCCccccCCCCCceeecccccCCCEEEEEEecCC-CcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChh
Q 001380 423 NRKTTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYC-CINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEK 501 (1089)
Q Consensus 423 ~~~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~w-C~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~ 501 (1089)
...+|+++|+|++. +.+|+.+++ ++++||++||+||++| |++|+.|+|.|+++++++. ++.||+||. +
T Consensus 17 ~~~~G~~~P~f~l~--~~~g~~v~l-~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~--~~~vv~vs~------D 85 (167)
T PRK00522 17 LPQVGDKAPDFTLV--ANDLSDVSL-ADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD--NTVVLCISA------D 85 (167)
T ss_pred CCCCCCCCCCeEEE--cCCCcEEeh-HHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC--CcEEEEEeC------C
Confidence 34689999999964 558999999 8999999999999999 9999999999999999984 799999975 4
Q ss_pred cHHHHHHHHHHcCCc-cceeec-CChhHHHHhCCCcee---------EEEEECCCCcEEEEecCC--CchhhHHHHHHH
Q 001380 502 DLEAIRNAVLRYGIS-HPVVND-GDMNLWRELGVNSWP---------TFAVVGPNGKLLAQLAGE--GHRKDLDDLVEA 567 (1089)
Q Consensus 502 ~~~~~~~~~~~~~~~-~~v~~d-~~~~l~~~~~v~~~P---------t~~lid~~G~i~~~~~G~--~~~~~l~~~l~~ 567 (1089)
+++..++|+++++++ ++++.| .++.+++.||+...| ++||||++|+|++.+.+. .....+++.++.
T Consensus 86 ~~~~~~~f~~~~~~~~~~~lsD~~~~~~~~~~gv~~~~~~~~g~~~r~tfvId~~G~I~~~~~~~~~~~~~~~~~~l~~ 164 (167)
T PRK00522 86 LPFAQKRFCGAEGLENVITLSDFRDHSFGKAYGVAIAEGPLKGLLARAVFVLDENNKVVYSELVPEITNEPDYDAALAA 164 (167)
T ss_pred CHHHHHHHHHhCCCCCceEeecCCccHHHHHhCCeecccccCCceeeEEEEECCCCeEEEEEECCCcCCCCCHHHHHHH
Confidence 557789999999998 689999 456999999998777 999999999999998643 333445555443
No 67
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=99.78 E-value=4.4e-18 Score=171.40 Aligned_cols=154 Identities=29% Similarity=0.462 Sum_probs=122.6
Q ss_pred EEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHhcC
Q 001380 81 AVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIYLDKYAK 160 (1089)
Q Consensus 81 ~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (1089)
+|+||+||||+|+...+..++.+++++++. +.+.+....+.....+.... ...+++. . +..
T Consensus 1 ~iifD~DGTL~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~------------~~~~~~~----~-~~~ 61 (154)
T TIGR01549 1 AILFDIDGTLVDSSFAIRRAFEETLEEFGE--DFQALKALRGLAEELLYRIA------------TSFEELL----G-YDA 61 (154)
T ss_pred CeEecCCCcccccHHHHHHHHHHHHHHhcc--cHHHHHHHHccChHHHHHHH------------HHHHHHh----C-cch
Confidence 489999999999999999999999999885 33444434433322221110 0111111 1 111
Q ss_pred CCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCC
Q 001380 161 PNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTS 240 (1089)
Q Consensus 161 ~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~ 240 (1089)
....+||+.++|+.|+++|++++|+||+.+..+...++.+ +. .+|+.++++++.. .||+|++|.++++++|+++
T Consensus 62 --~~~~~~g~~e~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~-l~-~~f~~i~~~~~~~-~Kp~~~~~~~~~~~~~~~~- 135 (154)
T TIGR01549 62 --EEAYIRGAADLLKRLKEAGIKLGIISNGSLRAQKLLLRKH-LG-DYFDLILGSDEFG-AKPEPEIFLAALESLGLPP- 135 (154)
T ss_pred --hheeccCHHHHHHHHHHCcCeEEEEeCCchHHHHHHHHHH-HH-hcCcEEEecCCCC-CCcCHHHHHHHHHHcCCCC-
Confidence 2256899999999999999999999999999999999998 75 8899999999888 9999999999999999999
Q ss_pred cEEEEcCChhhHHHHHHcC
Q 001380 241 ECIVIEDALAGVQAAKAAQ 259 (1089)
Q Consensus 241 ~~v~VGD~~~Di~aA~~aG 259 (1089)
+|+||||+..|+++|+++|
T Consensus 136 ~~l~iGDs~~Di~aa~~aG 154 (154)
T TIGR01549 136 EVLHVGDNLNDIEGARNAG 154 (154)
T ss_pred CEEEEeCCHHHHHHHHHcc
Confidence 9999999999999999987
No 68
>PHA02597 30.2 hypothetical protein; Provisional
Probab=99.78 E-value=1.6e-18 Score=182.12 Aligned_cols=188 Identities=15% Similarity=0.176 Sum_probs=129.7
Q ss_pred CceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH-H
Q 001380 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIYL-D 156 (1089)
Q Consensus 78 ~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 156 (1089)
|+|+|+||+||||+|.. .++..+++++|++. +++....+.......... .+. .. ....++.+.+. .
T Consensus 1 m~k~viFDlDGTLiD~~----~~~~~~~~~~g~~~--~~~~~~~g~~~~~~~~~~---~~~---~~-~~~~~~~~~~~~~ 67 (197)
T PHA02597 1 MKPTILTDVDGVLLSWQ----SGLPYFAQKYNIPT--DHILKMIQDERFRDPGEL---FGC---DQ-ELAKKLIEKYNNS 67 (197)
T ss_pred CCcEEEEecCCceEchh----hccHHHHHhcCCCH--HHHHHHHhHhhhcCHHHH---hcc---cH-HHHHHHhhhhhHH
Confidence 47999999999999944 45677888888753 454444443222111111 111 11 22223333333 2
Q ss_pred HhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCC---CCCccEEEEcCCccCCCCCHHHHHHHHH
Q 001380 157 KYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLP---VSMFDAIVSADAFENLKPAPDIFLSASK 233 (1089)
Q Consensus 157 ~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~---~~~fd~i~~~~~~~~~KP~~~~~~~~l~ 233 (1089)
..... ..++||+.++|+.|+++ ++++++||.........++.+++. ..+|+.++++++. ||+|++|..+++
T Consensus 68 ~~~~~--~~~~pG~~e~L~~L~~~-~~~~i~Tn~~~~~~~~~~~~~~l~~~f~~~f~~i~~~~~~---~~kp~~~~~a~~ 141 (197)
T PHA02597 68 DFIRY--LSAYDDALDVINKLKED-YDFVAVTALGDSIDALLNRQFNLNALFPGAFSEVLMCGHD---ESKEKLFIKAKE 141 (197)
T ss_pred HHHHh--ccCCCCHHHHHHHHHhc-CCEEEEeCCccchhHHHHhhCCHHHhCCCcccEEEEeccC---cccHHHHHHHHH
Confidence 22122 36899999999999997 578889997776666677777774 1256778887763 678999999999
Q ss_pred HcCCCCCcEEEEcCChhhHHHHHHc--CCeEEEEcCCCCHHHHhhcCCcEEecCcccC
Q 001380 234 ILNVPTSECIVIEDALAGVQAAKAA--QMRCIAVTTTLSEERLKEASPSLIRKEIGSV 289 (1089)
Q Consensus 234 ~lgv~p~~~v~VGD~~~Di~aA~~a--G~~~i~V~~g~~~~~l~~~~~d~vi~dl~el 289 (1089)
++| +++++||||+..|+++|+++ ||++++|.+|.. .....+++.+.++.|+
T Consensus 142 ~~~--~~~~v~vgDs~~di~aA~~a~~Gi~~i~~~~~~~---~~~~~~~~~~~~~~~~ 194 (197)
T PHA02597 142 KYG--DRVVCFVDDLAHNLDAAHEALSQLPVIHMLRGER---DHIPKLAHRVKSWNDI 194 (197)
T ss_pred HhC--CCcEEEeCCCHHHHHHHHHHHcCCcEEEecchhh---ccccchhhhhccHHHH
Confidence 999 89999999999999999999 999999999843 2222455677776655
No 69
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.77 E-value=4.2e-18 Score=174.52 Aligned_cols=125 Identities=22% Similarity=0.298 Sum_probs=103.8
Q ss_pred CCCCCCCCccccCCCCC----ceeecccccCCCEEEEEEe-cCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCCh
Q 001380 426 TTPIVPEFPAKLDWLNT----APLQFRRDLKGKVVVLDFW-TYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNE 500 (1089)
Q Consensus 426 ~g~~~P~f~~~~~~~~g----~~~~l~~~~~gk~vll~Fw-a~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~ 500 (1089)
+|+++|+|++. +.+| +.+++ ++++||++||+|| ++||++|..+++.|++++++|++.++.+|+|++ +..
T Consensus 1 vG~~aP~f~~~--~~~g~~~~~~~~l-~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~---d~~ 74 (173)
T cd03015 1 VGKKAPDFKAT--AVVPNGEFKEISL-SDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVST---DSH 74 (173)
T ss_pred CCCcCCCCEee--cccCCCCceEEeh-HHhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEec---CCH
Confidence 58999999964 3455 68999 8999999999999 899999999999999999999988999999986 222
Q ss_pred hcHHHHHHHHHH----cCCccceeecCChhHHHHhCCC------ceeEEEEECCCCcEEEEecCCC
Q 001380 501 KDLEAIRNAVLR----YGISHPVVNDGDMNLWRELGVN------SWPTFAVVGPNGKLLAQLAGEG 556 (1089)
Q Consensus 501 ~~~~~~~~~~~~----~~~~~~v~~d~~~~l~~~~~v~------~~Pt~~lid~~G~i~~~~~G~~ 556 (1089)
...+.+++...+ .+++|+++.|.+.++++.||+. .+|++||||++|+|++.+.+..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~ 140 (173)
T cd03015 75 FSHLAWRNTPRKEGGLGKINFPLLADPKKKISRDYGVLDEEEGVALRGTFIIDPEGIIRHITVNDL 140 (173)
T ss_pred HHHHHHHHhhhhhCCccCcceeEEECCchhHHHHhCCccccCCceeeEEEEECCCCeEEEEEecCC
Confidence 222333333332 5689999999999999999996 6889999999999999986643
No 70
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.76 E-value=1.6e-16 Score=173.36 Aligned_cols=207 Identities=23% Similarity=0.391 Sum_probs=157.1
Q ss_pred cceeEEeeCCCEEEEEECCCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCc
Q 001380 659 PQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQH 738 (1089)
Q Consensus 659 P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~ 738 (1089)
|.|+++++..+.||++|..+++|+++++.++....+. +..|.+++++..++.+||++.+..
T Consensus 2 ~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~-------------------~~~~~G~~~~~~~g~l~v~~~~~~ 62 (246)
T PF08450_consen 2 GEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVID-------------------LPGPNGMAFDRPDGRLYVADSGGI 62 (246)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE-------------------SSSEEEEEEECTTSEEEEEETTCE
T ss_pred CcceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEe-------------------cCCCceEEEEccCCEEEEEEcCce
Confidence 5799999855569999999999999999999888765 235899999944469999997554
Q ss_pred EEEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCC--------CeEEEEEcCCCCeEEE
Q 001380 739 QIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSES--------SSIRALNLKTGGSRLL 810 (1089)
Q Consensus 739 ~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~--------~~I~~~~~~~~~~~~~ 810 (1089)
..+|+.++.++.+...-. ....+..|++++++++| +||++++.. ++|++++++ +.+..+
T Consensus 63 --~~~d~~~g~~~~~~~~~~---------~~~~~~~~ND~~vd~~G-~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~ 129 (246)
T PF08450_consen 63 --AVVDPDTGKVTVLADLPD---------GGVPFNRPNDVAVDPDG-NLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVV 129 (246)
T ss_dssp --EEEETTTTEEEEEEEEET---------TCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEE
T ss_pred --EEEecCCCcEEEEeeccC---------CCcccCCCceEEEcCCC-CEEEEecCCCccccccccceEEECCC-CeEEEE
Confidence 445999998887764210 01256789999999998 799999865 579999988 555554
Q ss_pred ecCCCCCCCCccccCCCCCccccccccCceEEEEccCCc-EEEEeCCCCEEEEEeCC--CCeEE---EEeccCCCCCCCC
Q 001380 811 AGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQ-IYVADSYNHKIKKLDPA--SNRVS---TLAGIGKAGFKDG 884 (1089)
Q Consensus 811 ~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~-lyVaD~~n~~I~~~d~~--~~~v~---t~~g~g~~g~~~g 884 (1089)
.. .+..|.||+++++|+ |||+|+.+++|.+++.+ ++.+. .+.....
T Consensus 130 ~~----------------------~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~------ 181 (246)
T PF08450_consen 130 AD----------------------GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPG------ 181 (246)
T ss_dssp EE----------------------EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SS------
T ss_pred ec----------------------CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCC------
Confidence 32 167899999999995 99999999999999874 33232 2321110
Q ss_pred cccccccCCCceEEEccCCcEEEEECCCCEEEEEeCCCCCceEEEEee
Q 001380 885 AALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLDLNKEEPELQTLEL 932 (1089)
Q Consensus 885 ~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~~~~~~~~~~~~l~~ 932 (1089)
....|.|+++|.+|+||||+..+++|.++++++. .+..+..
T Consensus 182 -----~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~--~~~~i~~ 222 (246)
T PF08450_consen 182 -----GPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDGK--LLREIEL 222 (246)
T ss_dssp -----SSCEEEEEEEBTTS-EEEEEETTTEEEEEETTSC--EEEEEE-
T ss_pred -----CCcCCCcceEcCCCCEEEEEcCCCEEEEECCCcc--EEEEEcC
Confidence 1135999999999999999999999999999976 5566653
No 71
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.76 E-value=5.1e-18 Score=168.54 Aligned_cols=129 Identities=16% Similarity=0.142 Sum_probs=110.3
Q ss_pred CCCCCCCCccccCCCCCceeecccccCCCEEEEEEecCC-CcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHH
Q 001380 426 TTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYC-CINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLE 504 (1089)
Q Consensus 426 ~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~w-C~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~ 504 (1089)
+|+++|+|++. +.+|+.+++ ++++||++||+||++| |++|+.++|.|++++++++ ++.+|+|+. ++.+
T Consensus 2 ~G~~aP~f~l~--~~~g~~~~l-~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~--~~~vi~Is~------d~~~ 70 (143)
T cd03014 2 VGDKAPDFTLV--TSDLSEVSL-ADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD--NTVVLTISA------DLPF 70 (143)
T ss_pred CCCCCCCcEEE--CCCCcEEeH-HHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC--CCEEEEEEC------CCHH
Confidence 68999999964 568999999 8899999999999988 6999999999999999984 799999975 4466
Q ss_pred HHHHHHHHcCC-ccceeecCC-hhHHHHhCCCc------eeEEEEECCCCcEEEEecCC--CchhhHHHHH
Q 001380 505 AIRNAVLRYGI-SHPVVNDGD-MNLWRELGVNS------WPTFAVVGPNGKLLAQLAGE--GHRKDLDDLV 565 (1089)
Q Consensus 505 ~~~~~~~~~~~-~~~v~~d~~-~~l~~~~~v~~------~Pt~~lid~~G~i~~~~~G~--~~~~~l~~~l 565 (1089)
..++|.+++++ +++++.|.. ..+++.||+.. .|++||||++|+|++.+.|. ....++++.|
T Consensus 71 ~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~~~~~~~~~~~~iid~~G~I~~~~~~~~~~~~~~~~~~~ 141 (143)
T cd03014 71 AQKRWCGAEGVDNVTTLSDFRDHSFGKAYGVLIKDLGLLARAVFVIDENGKVIYVELVPEITDEPDYEAAL 141 (143)
T ss_pred HHHHHHHhcCCCCceEeecCcccHHHHHhCCeeccCCccceEEEEEcCCCeEEEEEECCCcccCCCHHHHh
Confidence 77889999997 789999986 99999999964 79999999999999998765 3344555544
No 72
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.76 E-value=5.3e-18 Score=170.67 Aligned_cols=119 Identities=16% Similarity=0.126 Sum_probs=98.9
Q ss_pred CCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEE------EEEeCCCCCChhcH----HHHHHHH
Q 001380 441 NTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTV------VGVHSAKFDNEKDL----EAIRNAV 510 (1089)
Q Consensus 441 ~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~v------i~v~~~~~~~~~~~----~~~~~~~ 510 (1089)
+.++++. ++++||++||+|||+||++|+.++|.|.++.++ ++.+ ++|+. +++. .-+++|+
T Consensus 48 ~y~~~~~-~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~----~~~~~~y~~t~~IN~-----dd~~~~~~~fVk~fi 117 (184)
T TIGR01626 48 VYQPWGS-AELAGKVRVVHHIAGRTSAKEXNASLIDAIKAA----KFPPVKYQTTTIINA-----DDAIVGTGMFVKSSA 117 (184)
T ss_pred cceeccH-HHcCCCEEEEEEEecCCChhhccchHHHHHHHc----CCCcccccceEEEEC-----ccchhhHHHHHHHHH
Confidence 3446666 899999999999999999999999999999543 6777 88864 4433 3456777
Q ss_pred HHcCCccc---eeecCChhHHHHhCCCceeEE-EEECCCCcEEEEecCCCchhhHHHHHHHHHH
Q 001380 511 LRYGISHP---VVNDGDMNLWRELGVNSWPTF-AVVGPNGKLLAQLAGEGHRKDLDDLVEAALL 570 (1089)
Q Consensus 511 ~~~~~~~~---v~~d~~~~l~~~~~v~~~Pt~-~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~ 570 (1089)
++.+..|| ++.|.++.++..|++.++|++ ||||++|+|++++.|..+.+++++ +..+++
T Consensus 118 e~~~~~~P~~~vllD~~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~-~~~li~ 180 (184)
T TIGR01626 118 KKGKKENPWSQVVLDDKGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQT-VISLVN 180 (184)
T ss_pred HHhcccCCcceEEECCcchHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHH-HHHHHH
Confidence 77788887 999999999999999999988 899999999999999999888877 444443
No 73
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.76 E-value=4.9e-18 Score=170.02 Aligned_cols=123 Identities=18% Similarity=0.222 Sum_probs=110.6
Q ss_pred CCCCCCCCCccccCCCCCceeecccccCC-CEEEEEEe-cCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhc
Q 001380 425 KTTPIVPEFPAKLDWLNTAPLQFRRDLKG-KVVVLDFW-TYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKD 502 (1089)
Q Consensus 425 ~~g~~~P~f~~~~~~~~g~~~~l~~~~~g-k~vll~Fw-a~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~ 502 (1089)
.+|+.+|+|.+. +.+|+.+++ ++++| |++||.|| ++||+.|+.++|.|++++++++++++.+|+|++ ++
T Consensus 2 ~~G~~~p~~~l~--~~~g~~v~l-~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~------d~ 72 (149)
T cd03018 2 EVGDKAPDFELP--DQNGQEVRL-SEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISV------DS 72 (149)
T ss_pred CCCCcCCCcEec--CCCCCEEeH-HHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecC------CC
Confidence 579999999965 458999999 99999 99999998 999999999999999999999988999999975 45
Q ss_pred HHHHHHHHHHcCCccceeecCC--hhHHHHhCCCc------eeEEEEECCCCcEEEEecCCC
Q 001380 503 LEAIRNAVLRYGISHPVVNDGD--MNLWRELGVNS------WPTFAVVGPNGKLLAQLAGEG 556 (1089)
Q Consensus 503 ~~~~~~~~~~~~~~~~v~~d~~--~~l~~~~~v~~------~Pt~~lid~~G~i~~~~~G~~ 556 (1089)
.+.+++|+++++++|+++.|.+ .++++.|++.. .|++||||++|++++.+.|..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~g~~~~~~~~~~~~~~lid~~G~v~~~~~~~~ 134 (149)
T cd03018 73 PFSLRAWAEENGLTFPLLSDFWPHGEVAKAYGVFDEDLGVAERAVFVIDRDGIIRYAWVSDD 134 (149)
T ss_pred HHHHHHHHHhcCCCceEecCCCchhHHHHHhCCccccCCCccceEEEECCCCEEEEEEecCC
Confidence 6789999999999999999987 99999999973 348999999999999988875
No 74
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.75 E-value=5.7e-18 Score=175.17 Aligned_cols=122 Identities=22% Similarity=0.185 Sum_probs=101.8
Q ss_pred CCCCCCCCCccccCCCCCc--eeecccccCCCEEEEEEe-cCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChh
Q 001380 425 KTTPIVPEFPAKLDWLNTA--PLQFRRDLKGKVVVLDFW-TYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEK 501 (1089)
Q Consensus 425 ~~g~~~P~f~~~~~~~~g~--~~~l~~~~~gk~vll~Fw-a~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~ 501 (1089)
.+|+.+|+|++.. ..+|+ .+++ ++++||++||+|| ++||++|..+++.|++++++|++.++.||+||. +
T Consensus 3 ~~G~~aP~f~l~~-~~~g~~~~~sl-~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~------D 74 (187)
T TIGR03137 3 LINTEIKPFKATA-YHNGEFVEVTD-EDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVST------D 74 (187)
T ss_pred ccCCcCCCcEeee-ccCCceeEecH-HHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeC------C
Confidence 5799999999642 12565 6777 8999999999999 999999999999999999999988999999986 2
Q ss_pred cHHHHHHHHHH----cCCccceeecCChhHHHHhCCC------ceeEEEEECCCCcEEEEecC
Q 001380 502 DLEAIRNAVLR----YGISHPVVNDGDMNLWRELGVN------SWPTFAVVGPNGKLLAQLAG 554 (1089)
Q Consensus 502 ~~~~~~~~~~~----~~~~~~v~~d~~~~l~~~~~v~------~~Pt~~lid~~G~i~~~~~G 554 (1089)
+.+..++|.+. .+++||++.|++..+++.|||. ..|++||||++|+|++.+..
T Consensus 75 ~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~gv~~~~~g~~~p~tfiID~~G~I~~~~~~ 137 (187)
T TIGR03137 75 THFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFGVLIEEAGLADRGTFVIDPEGVIQAVEIT 137 (187)
T ss_pred CHHHHHHHHhhhhhccCcceeEEECCccHHHHHhCCcccCCCceeeEEEEECCCCEEEEEEEe
Confidence 23334444333 3688999999999999999996 46999999999999998754
No 75
>PLN02954 phosphoserine phosphatase
Probab=99.75 E-value=1.4e-17 Score=178.91 Aligned_cols=197 Identities=18% Similarity=0.198 Sum_probs=136.2
Q ss_pred CCCCCceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhh-hcC--CCHHHHHHHHHhhcCCCCCCHHHHHHHH
Q 001380 74 SKWGKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLP-FMG--TGEANFLGGVASVKGVKGFDSEAAKKRF 150 (1089)
Q Consensus 74 ~~~~~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (1089)
++|+++|+|+|||||||++++ .+..+++++|.....+++.. +.+ .+..+......... .... +.+
T Consensus 7 ~~~~~~k~viFDfDGTL~~~~-----~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~----~~~ 74 (224)
T PLN02954 7 ELWRSADAVCFDVDSTVCVDE-----GIDELAEFCGAGEAVAEWTAKAMGGSVPFEEALAARLSLF---KPSL----SQV 74 (224)
T ss_pred HHHccCCEEEEeCCCcccchH-----HHHHHHHHcCChHHHHHHHHHHHCCCCCHHHHHHHHHHHc---CCCH----HHH
Confidence 467889999999999999975 45778888888644444432 233 23333332222211 1111 122
Q ss_pred HHHHHHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCC-CCccEE---------EEcCC---
Q 001380 151 FEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPV-SMFDAI---------VSADA--- 217 (1089)
Q Consensus 151 ~~~~~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~-~~fd~i---------~~~~~--- 217 (1089)
.+.+. .. ...++||+.++|+.|+++|++++|+|++....++.+++.+|+.. .+|+.. .+.+.
T Consensus 75 ~~~~~-~~----~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~gi~~~~~~~~~~~~~~~g~~~g~~~~~~ 149 (224)
T PLN02954 75 EEFLE-KR----PPRLSPGIPELVKKLRARGTDVYLVSGGFRQMIAPVAAILGIPPENIFANQILFGDSGEYAGFDENEP 149 (224)
T ss_pred HHHHH-Hc----cCCCCccHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHhCCChhhEEEeEEEEcCCCcEECccCCCc
Confidence 22222 11 12689999999999999999999999999999999999999951 345321 11111
Q ss_pred ccCCCCCHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccC
Q 001380 218 FENLKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSV 289 (1089)
Q Consensus 218 ~~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el 289 (1089)
....++|+++++.+++++|. ++|+||||+.+|+.+|+++|+.++...++....+.....+++++.++.++
T Consensus 150 ~~~~~~K~~~i~~~~~~~~~--~~~i~iGDs~~Di~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~el 219 (224)
T PLN02954 150 TSRSGGKAEAVQHIKKKHGY--KTMVMIGDGATDLEARKPGGADLFIGYGGVQVREAVAAKADWFVTDFQDL 219 (224)
T ss_pred ccCCccHHHHHHHHHHHcCC--CceEEEeCCHHHHHhhhcCCCCEEEecCCCccCHHHHhcCCEEECCHHHH
Confidence 12357889999999999986 68999999999999999989887655444333333456899999999877
No 76
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=99.75 E-value=1.6e-17 Score=170.70 Aligned_cols=122 Identities=20% Similarity=0.291 Sum_probs=103.7
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCCh---------------HhHHHHHHHCCCCCCCccEEEEc-----------CCc
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSADR---------------IKVDANLAAAGLPVSMFDAIVSA-----------DAF 218 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~---------------~~~~~~l~~~gl~~~~fd~i~~~-----------~~~ 218 (1089)
.++||+.++|++|+++|++++|+||... ..+...++.+++. |+.++.+ ++.
T Consensus 26 ~~~pgv~e~L~~Lk~~G~~l~i~TN~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~i~~~~~~~~~~~~~~~~~ 102 (176)
T TIGR00213 26 EFIDGVIDALRELKKMGYALVLVTNQSGIARGYFTEAQFEQLTEWMDWSLAERDVD---LDGIYYCPHHPEGVEEFRQVC 102 (176)
T ss_pred EECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcCCC---ccEEEECCCCCcccccccCCC
Confidence 6899999999999999999999999874 3445677777775 7776653 245
Q ss_pred cCCCCCHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeE-EEEcCCCCHHHHhhcCCcEEecCcccC
Q 001380 219 ENLKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRC-IAVTTTLSEERLKEASPSLIRKEIGSV 289 (1089)
Q Consensus 219 ~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~-i~V~~g~~~~~l~~~~~d~vi~dl~el 289 (1089)
...||+|++|.++++++|+++++|+||||+.+|+++|+++|+++ ++|.+|...+.....+|+++++++.+|
T Consensus 103 ~~~KP~p~~~~~a~~~~~~~~~~~v~VGDs~~Di~aA~~aG~~~~i~v~~g~~~~~~~~~~ad~~i~~~~el 174 (176)
T TIGR00213 103 DCRKPKPGMLLQARKELHIDMAQSYMVGDKLEDMQAGVAAKVKTNVLVRTGKPITPEAENIADWVLNSLADL 174 (176)
T ss_pred CCCCCCHHHHHHHHHHcCcChhhEEEEcCCHHHHHHHHHCCCcEEEEEecCCcccccccccCCEEeccHHHh
Confidence 56899999999999999999999999999999999999999998 899998654444446799999999887
No 77
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=99.74 E-value=2.6e-17 Score=170.17 Aligned_cols=127 Identities=29% Similarity=0.409 Sum_probs=105.7
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCCh---------------HhHHHHHHHCCCCCCCccEEEEc-----CCccCCCCC
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSADR---------------IKVDANLAAAGLPVSMFDAIVSA-----DAFENLKPA 224 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~---------------~~~~~~l~~~gl~~~~fd~i~~~-----~~~~~~KP~ 224 (1089)
.++||+.++|++|+++|++++|+||... +.+...++++|+. |+.++.+ ++....||+
T Consensus 29 ~~~pgv~e~L~~Lk~~g~~l~I~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~---f~~i~~~~~~~~~~~~~~KP~ 105 (181)
T PRK08942 29 IPIPGSIEAIARLKQAGYRVVVATNQSGIARGLFTEAQLNALHEKMDWSLADRGGR---LDGIYYCPHHPEDGCDCRKPK 105 (181)
T ss_pred EECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcCCc---cceEEECCCCCCCCCcCCCCC
Confidence 6799999999999999999999999762 3345567777773 7777654 345778999
Q ss_pred HHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCC--cEEecCcccCCHHHHHh
Q 001380 225 PDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASP--SLIRKEIGSVSLNDILT 296 (1089)
Q Consensus 225 ~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~--d~vi~dl~el~i~~ll~ 296 (1089)
|++|.++++++|+++++|+||||+.+|+++|+++|+.++++.+|.....+....+ ++++.++.++ .+++.
T Consensus 106 p~~~~~~~~~l~~~~~~~~~VgDs~~Di~~A~~aG~~~i~v~~g~~~~~~~~~~~~~~~ii~~l~el--~~~l~ 177 (181)
T PRK08942 106 PGMLLSIAERLNIDLAGSPMVGDSLRDLQAAAAAGVTPVLVRTGKGVTTLAEGAAPGTWVLDSLADL--PQALK 177 (181)
T ss_pred HHHHHHHHHHcCCChhhEEEEeCCHHHHHHHHHCCCeEEEEcCCCCchhhhcccCCCceeecCHHHH--HHHHH
Confidence 9999999999999999999999999999999999999999998875444445566 9999999887 55543
No 78
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=99.74 E-value=1.4e-17 Score=170.42 Aligned_cols=123 Identities=16% Similarity=0.123 Sum_probs=105.0
Q ss_pred CCCCCCCCCCccccCCCCCc--eeecccccCCCEEEEEEe-cCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCCh
Q 001380 424 RKTTPIVPEFPAKLDWLNTA--PLQFRRDLKGKVVVLDFW-TYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNE 500 (1089)
Q Consensus 424 ~~~g~~~P~f~~~~~~~~g~--~~~l~~~~~gk~vll~Fw-a~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~ 500 (1089)
..+|+++|+|+.... .+|. .++| ++++||++||+|| +.||+.|..|++.|++++++|++.++.+|+||.
T Consensus 2 ~~~~~~~p~f~~~~~-~~g~~~~v~L-~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~------ 73 (187)
T PRK10382 2 SLINTKIKPFKNQAF-KNGEFIEVTE-KDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVST------ 73 (187)
T ss_pred CccCCcCCCcEEEEE-eCCcceEEEH-HHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeC------
Confidence 358999999997532 1344 6777 8999999999999 999999999999999999999988999999985
Q ss_pred hcHHHHHHHHHH----cCCccceeecCChhHHHHhCCC----ce--eEEEEECCCCcEEEEecC
Q 001380 501 KDLEAIRNAVLR----YGISHPVVNDGDMNLWRELGVN----SW--PTFAVVGPNGKLLAQLAG 554 (1089)
Q Consensus 501 ~~~~~~~~~~~~----~~~~~~v~~d~~~~l~~~~~v~----~~--Pt~~lid~~G~i~~~~~G 554 (1089)
++....++|.+. .+++||++.|++.++++.||+. ++ |++||||++|+|++.+..
T Consensus 74 D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~~~~ 137 (187)
T PRK10382 74 DTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVT 137 (187)
T ss_pred CCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcCCCcccCCceeeEEEEECCCCEEEEEEEe
Confidence 556666666655 4889999999999999999983 55 999999999999998654
No 79
>PRK13190 putative peroxiredoxin; Provisional
Probab=99.74 E-value=2.3e-17 Score=172.49 Aligned_cols=137 Identities=21% Similarity=0.273 Sum_probs=109.6
Q ss_pred CCCCCCCCCccccCCCCCceeecccccCCCEEEE-EEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcH
Q 001380 425 KTTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVL-DFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDL 503 (1089)
Q Consensus 425 ~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll-~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~ 503 (1089)
.+|+.+|+|++. +.+| .+++ ++++||++|| +||++||+.|..|++.|++++++|+++++.+|+||+ +.....
T Consensus 3 ~vG~~aP~F~~~--~~~g-~v~l-~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~---D~~~~~ 75 (202)
T PRK13190 3 KLGQKAPDFTVN--TTKG-PIDL-SKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSV---DSIYSH 75 (202)
T ss_pred CCCCCCCCcEEe--cCCC-cEeH-HHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeC---CCHHHH
Confidence 579999999975 3355 6899 8899998776 689999999999999999999999988999999987 333333
Q ss_pred HHH-HHHHHHcC--CccceeecCChhHHHHhCCC------ceeEEEEECCCCcEEEEec----CCCchhhHHHHHHHH
Q 001380 504 EAI-RNAVLRYG--ISHPVVNDGDMNLWRELGVN------SWPTFAVVGPNGKLLAQLA----GEGHRKDLDDLVEAA 568 (1089)
Q Consensus 504 ~~~-~~~~~~~~--~~~~v~~d~~~~l~~~~~v~------~~Pt~~lid~~G~i~~~~~----G~~~~~~l~~~l~~~ 568 (1089)
.+| +++.++++ ++||++.|.++++++.||+. .+|++||||++|+|++... +..+.+++.+.|+.+
T Consensus 76 ~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l 153 (202)
T PRK13190 76 IAWLRDIEERFGIKIPFPVIADIDKELAREYNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKAL 153 (202)
T ss_pred HHHHHhHHHhcCCCceEEEEECCChHHHHHcCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 444 34555666 57999999999999999985 5899999999999998752 233556665555554
No 80
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.74 E-value=1.2e-17 Score=158.81 Aligned_cols=109 Identities=20% Similarity=0.341 Sum_probs=95.2
Q ss_pred CCCccccCCCCCceeecccccC-CCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHH
Q 001380 431 PEFPAKLDWLNTAPLQFRRDLK-GKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNA 509 (1089)
Q Consensus 431 P~f~~~~~~~~g~~~~l~~~~~-gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~ 509 (1089)
|+|.+ .+++|+.+++ ++++ ||++||+||++||++|+.++|.++++++++++ ++.++.++ +++.++++++
T Consensus 1 p~f~l--~~~~G~~~~l-~~~~~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~-~~~vi~v~------~~~~~~~~~~ 70 (114)
T cd02967 1 PTFDL--TTIDGAPVRI-GGISPGRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD-WLDVVLAS------DGEKAEHQRF 70 (114)
T ss_pred CCcee--ecCCCCEEEc-ccccCCCeEEEEEECCCCcchHhHhHHHHHHHHHhcC-CcEEEEEe------CCCHHHHHHH
Confidence 67775 4569999999 8886 99999999999999999999999999998865 48888773 4577899999
Q ss_pred HHHcCCc-cceeecCChhHHHHhCCCceeEEEEECCCCcEEEE
Q 001380 510 VLRYGIS-HPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQ 551 (1089)
Q Consensus 510 ~~~~~~~-~~v~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~ 551 (1089)
++++++. +|++.+ .++++.|++..+|++|+||++|+++++
T Consensus 71 ~~~~~~~~~p~~~~--~~~~~~~~~~~~P~~~vid~~G~v~~~ 111 (114)
T cd02967 71 LKKHGLEAFPYVLS--AELGMAYQVSKLPYAVLLDEAGVIAAK 111 (114)
T ss_pred HHHhCCCCCcEEec--HHHHhhcCCCCcCeEEEECCCCeEEec
Confidence 9999995 898874 468999999999999999999999876
No 81
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=99.74 E-value=5.1e-16 Score=158.22 Aligned_cols=251 Identities=14% Similarity=0.214 Sum_probs=193.0
Q ss_pred CCCCceEEEeecCCeEEEEeCCCCEEEEEeCC-CCEEEE-EecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECC
Q 001380 600 LKFPGKLAIDILNNRLFISDSNHNRIVVTDLD-GNFIVQ-IGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTE 677 (1089)
Q Consensus 600 l~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~-g~~~~~-i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~ 677 (1089)
-..|..|+.++ +|.+|+++.+.|.|-++|+. |+..+. ++.+ .+|+||.++|+|+ .||+|+.
T Consensus 61 G~ap~dvapap-dG~VWft~qg~gaiGhLdP~tGev~~ypLg~G---------------a~Phgiv~gpdg~-~Witd~~ 123 (353)
T COG4257 61 GSAPFDVAPAP-DGAVWFTAQGTGAIGHLDPATGEVETYPLGSG---------------ASPHGIVVGPDGS-AWITDTG 123 (353)
T ss_pred CCCccccccCC-CCceEEecCccccceecCCCCCceEEEecCCC---------------CCCceEEECCCCC-eeEecCc
Confidence 34677889987 89999999999999999997 665542 3322 3899999999999 9999998
Q ss_pred CCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCC
Q 001380 678 NHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDG 757 (1089)
Q Consensus 678 n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g 757 (1089)
+ .|.++|.++..++++.-....+.. +-.-..||+.| +||++.. ++---++|+..+.+++|.-
T Consensus 124 ~-aI~R~dpkt~evt~f~lp~~~a~~-------------nlet~vfD~~G-~lWFt~q-~G~yGrLdPa~~~i~vfpa-- 185 (353)
T COG4257 124 L-AIGRLDPKTLEVTRFPLPLEHADA-------------NLETAVFDPWG-NLWFTGQ-IGAYGRLDPARNVISVFPA-- 185 (353)
T ss_pred c-eeEEecCcccceEEeecccccCCC-------------cccceeeCCCc-cEEEeec-cccceecCcccCceeeecc--
Confidence 8 999999999999999765544332 34456789888 8888865 3333478888888888862
Q ss_pred ccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCcccccccc
Q 001380 758 YERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQ 837 (1089)
Q Consensus 758 ~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~ 837 (1089)
.+-..|+||++.++| .+|++....+.|-++++..+...++.-- +.+-+
T Consensus 186 ------------PqG~gpyGi~atpdG-svwyaslagnaiaridp~~~~aev~p~P-------------------~~~~~ 233 (353)
T COG4257 186 ------------PQGGGPYGICATPDG-SVWYASLAGNAIARIDPFAGHAEVVPQP-------------------NALKA 233 (353)
T ss_pred ------------CCCCCCcceEECCCC-cEEEEeccccceEEcccccCCcceecCC-------------------Ccccc
Confidence 122359999999999 9999999999999999886644333211 11122
Q ss_pred CceEEEEccCCcEEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEEE
Q 001380 838 HPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRY 917 (1089)
Q Consensus 838 ~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~ 917 (1089)
.-..|..|+.|++|+++++++++.+|||++..-..+-- + ..-.+|..+.||..|++|.+|...+.|.+
T Consensus 234 gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypL---P---------gs~arpys~rVD~~grVW~sea~agai~r 301 (353)
T COG4257 234 GSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPL---P---------GSKARPYSMRVDRHGRVWLSEADAGAIGR 301 (353)
T ss_pred cccccccCccCcEEEeccCCceeeEeCcccccceeeeC---C---------CCCCCcceeeeccCCcEEeeccccCceee
Confidence 34567889999999999999999999998665333321 1 13367999999999999999999999999
Q ss_pred EeCCCCCceEEEEe
Q 001380 918 LDLNKEEPELQTLE 931 (1089)
Q Consensus 918 ~~~~~~~~~~~~l~ 931 (1089)
|++.+. +.+.+.
T Consensus 302 fdpeta--~ftv~p 313 (353)
T COG4257 302 FDPETA--RFTVLP 313 (353)
T ss_pred cCcccc--eEEEec
Confidence 999886 555554
No 82
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=99.73 E-value=3e-17 Score=175.77 Aligned_cols=189 Identities=20% Similarity=0.169 Sum_probs=128.1
Q ss_pred CCCCCceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhhcCC---CHHHHHHHHHhhcCCCCCCHHHHHHHH
Q 001380 74 SKWGKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGT---GEANFLGGVASVKGVKGFDSEAAKKRF 150 (1089)
Q Consensus 74 ~~~~~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (1089)
.+++++++|+||+||||+++. .+.++++.+|.+....++...... ............. .. ...+..
T Consensus 9 ~~~~~~k~iiFD~DGTL~~~~-----~~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~-~~~~~~--- 77 (219)
T TIGR00338 9 PLLRSKKLVVFDMDSTLINAE-----TIDEIAKIAGVEEEVSEITERAMRGELDFKASLRERVALL--KG-LPVELL--- 77 (219)
T ss_pred hhhccCCEEEEeCcccCCCch-----HHHHHHHHhCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHh--CC-CCHHHH---
Confidence 345678999999999999975 456777778775443333221111 1222222211111 11 111111
Q ss_pred HHHHHHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEE-------EcC---CccC
Q 001380 151 FEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIV-------SAD---AFEN 220 (1089)
Q Consensus 151 ~~~~~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~-------~~~---~~~~ 220 (1089)
+.+.+ . ..++||+.++|+.|+++|++++|+||+....++.+++.+|+. .+|+..+ ++. ....
T Consensus 78 -~~~~~----~--~~~~~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~ 149 (219)
T TIGR00338 78 -KEVRE----N--LPLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVKDKLGLD-AAFANRLEVEDGKLTGLVEGPIVD 149 (219)
T ss_pred -HHHHh----c--CCcCCCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCC-ceEeeEEEEECCEEEEEecCcccC
Confidence 11111 1 268999999999999999999999999999999999999997 7775322 111 1223
Q ss_pred CCCCHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCc
Q 001380 221 LKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEI 286 (1089)
Q Consensus 221 ~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl 286 (1089)
.+|++.+|+.+++++++++++|+||||+.+|+.+|+++|+.. .++. .+.+.+ .+++++.+.
T Consensus 150 ~~~k~~~~~~~~~~~~~~~~~~i~iGDs~~Di~aa~~ag~~i-~~~~---~~~~~~-~a~~~i~~~ 210 (219)
T TIGR00338 150 ASYKGKTLLILLRKEGISPENTVAVGDGANDLSMIKAAGLGI-AFNA---KPKLQQ-KADICINKK 210 (219)
T ss_pred CcccHHHHHHHHHHcCCCHHHEEEEECCHHHHHHHHhCCCeE-EeCC---CHHHHH-hchhccCCC
Confidence 577999999999999999999999999999999999999974 3332 233333 577776644
No 83
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.73 E-value=2.9e-17 Score=170.27 Aligned_cols=132 Identities=17% Similarity=0.201 Sum_probs=107.5
Q ss_pred CCCCCCCCCCccccCCCCCceeecc-cccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhc
Q 001380 424 RKTTPIVPEFPAKLDWLNTAPLQFR-RDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKD 502 (1089)
Q Consensus 424 ~~~g~~~P~f~~~~~~~~g~~~~l~-~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~ 502 (1089)
..+|+.+|+|+++ +.+|+.++++ .+++||++||+||++||++|+.++|.++++++++ ++.+++|+. ++
T Consensus 46 ~~vG~~aP~f~l~--d~~G~~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~---~~~vv~Is~------~~ 114 (189)
T TIGR02661 46 PDVGDAAPIFNLP--DFDGEPVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAE---ETDVVMISD------GT 114 (189)
T ss_pred CCCCCcCCCcEec--CCCCCEEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHHhc---CCcEEEEeC------CC
Confidence 4689999999954 5699999984 3579999999999999999999999999998764 466788852 46
Q ss_pred HHHHHHHHHHcCCccceeecCChhHHHHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHH
Q 001380 503 LEAIRNAVLRYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAA 568 (1089)
Q Consensus 503 ~~~~~~~~~~~~~~~~v~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~ 568 (1089)
.+++++|+++++++++.+. .+.++++.|++..+|++|+||++|+++++.. ....+.++++++++
T Consensus 115 ~~~~~~~~~~~~~~~~~~~-~~~~i~~~y~v~~~P~~~lID~~G~I~~~g~-~~~~~~le~ll~~l 178 (189)
T TIGR02661 115 PAEHRRFLKDHELGGERYV-VSAEIGMAFQVGKIPYGVLLDQDGKIRAKGL-TNTREHLESLLEAD 178 (189)
T ss_pred HHHHHHHHHhcCCCcceee-chhHHHHhccCCccceEEEECCCCeEEEccC-CCCHHHHHHHHHHH
Confidence 7789999999999986543 4678999999999999999999999998632 23456666666543
No 84
>PRK13599 putative peroxiredoxin; Provisional
Probab=99.73 E-value=2.5e-17 Score=172.86 Aligned_cols=123 Identities=13% Similarity=0.126 Sum_probs=106.3
Q ss_pred CCCCCCCCCccccCCCCCceeecccccCCCEE-EEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcH
Q 001380 425 KTTPIVPEFPAKLDWLNTAPLQFRRDLKGKVV-VLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDL 503 (1089)
Q Consensus 425 ~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~v-ll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~ 503 (1089)
.+|+++|+|++. +.+|+...+ ++++||++ |++||++||+.|..|++.|++++++|++.|+.+||||+ +.....
T Consensus 3 ~~Gd~aPdF~l~--t~~G~~~~~-~~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~---D~~~~~ 76 (215)
T PRK13599 3 LLGEKFPSMEVV--TTQGVKRLP-EDYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSV---DQVFSH 76 (215)
T ss_pred CCCCCCCCCEeE--CCCCcEecH-HHHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeC---CCHHHH
Confidence 579999999964 448887776 88999985 67899999999999999999999999988999999987 445556
Q ss_pred HHHHHHHHH---cCCccceeecCChhHHHHhCCC-------ceeEEEEECCCCcEEEEec
Q 001380 504 EAIRNAVLR---YGISHPVVNDGDMNLWRELGVN-------SWPTFAVVGPNGKLLAQLA 553 (1089)
Q Consensus 504 ~~~~~~~~~---~~~~~~v~~d~~~~l~~~~~v~-------~~Pt~~lid~~G~i~~~~~ 553 (1089)
.+|.+++++ ++++||++.|.++++++.||+. ..|++||||++|+|++.+.
T Consensus 77 ~~w~~~i~~~~~~~i~fPil~D~~~~va~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~ 136 (215)
T PRK13599 77 IKWVEWIKDNTNIAIPFPVIADDLGKVSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLIMY 136 (215)
T ss_pred HHHHHhHHHhcCCCCceeEEECCCchHHHHcCCCccCCCCceeeEEEEECCCCEEEEEEE
Confidence 677777775 4788999999999999999984 6899999999999999854
No 85
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=99.72 E-value=1.6e-17 Score=171.08 Aligned_cols=161 Identities=21% Similarity=0.289 Sum_probs=119.5
Q ss_pred EEEEecCCcccCCchHHHHHHHHHHHHcCCC---CCH-----HhHhhhcC--CCHHH----HHHHHHhhcCCCCCCHHHH
Q 001380 81 AVLFDMDGVLCNSEEPSRRAAVDVFAEMGVE---VTV-----EDFLPFMG--TGEAN----FLGGVASVKGVKGFDSEAA 146 (1089)
Q Consensus 81 ~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~---~~~-----~~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~ 146 (1089)
+|+||+||||+|++..+..++.+++++.+.. +.. .......+ ..... ....+...++... .. +.
T Consensus 1 ~viFD~DGTL~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~-~~ 78 (175)
T TIGR01493 1 AMVFDVYGTLVDVHGGVRACLAAIAPEGGAFSDLWRAKQQEYSWRRSLMGDRRAFPEDTVRALRYIADRLGLDA-EP-KY 78 (175)
T ss_pred CeEEecCCcCcccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHcCCCC-CH-HH
Confidence 5899999999999999999998888775421 111 11111212 11112 3334444455432 22 22
Q ss_pred HHHHHHHHHHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHH
Q 001380 147 KKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPD 226 (1089)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~ 226 (1089)
...+.+. +.. ..++||+.++|+ +++|+||+.+..++..++++++. .+||.++++++++..||+|+
T Consensus 79 ~~~~~~~----~~~---~~~~~g~~~~L~-------~~~i~Tn~~~~~~~~~l~~~~l~-~~fd~v~~~~~~~~~KP~p~ 143 (175)
T TIGR01493 79 GERLRDA----YKN---LPPWPDSAAALA-------RVAILSNASHWAFDQFAQQAGLP-WYFDRAFSVDTVRAYKPDPV 143 (175)
T ss_pred HHHHHHH----Hhc---CCCCCchHHHHH-------HHhhhhCCCHHHHHHHHHHCCCH-HHHhhhccHhhcCCCCCCHH
Confidence 2222222 222 268999999998 38999999999999999999996 99999999999999999999
Q ss_pred HHHHHHHHcCCCCCcEEEEcCChhhHHHHHHc
Q 001380 227 IFLSASKILNVPTSECIVIEDALAGVQAAKAA 258 (1089)
Q Consensus 227 ~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~a 258 (1089)
+|..+++++|++|++|+||||+..|+.+|+++
T Consensus 144 ~f~~~~~~~~~~p~~~l~vgD~~~Di~~A~~~ 175 (175)
T TIGR01493 144 VYELVFDTVGLPPDRVLMVAAHQWDLIGARKF 175 (175)
T ss_pred HHHHHHHHHCCCHHHeEeEecChhhHHHHhcC
Confidence 99999999999999999999999999999864
No 86
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.72 E-value=4e-17 Score=157.60 Aligned_cols=121 Identities=27% Similarity=0.434 Sum_probs=107.0
Q ss_pred CCCccccCCCCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHH
Q 001380 431 PEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAV 510 (1089)
Q Consensus 431 P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~ 510 (1089)
|+|++ .+++|+.+++ .+++||++||+||++||++|+.++|.|++++++ +.+++|+.+ .++.+++++++
T Consensus 1 p~f~l--~~~~g~~~~~-~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~-----~~~i~i~~~----~~~~~~~~~~~ 68 (123)
T cd03011 1 PLFTA--TTLDGEQFDL-ESLSGKPVLVYFWATWCPVCRFTSPTVNQLAAD-----YPVVSVALR----SGDDGAVARFM 68 (123)
T ss_pred CCcee--ecCCCCEeeH-HHhCCCEEEEEEECCcChhhhhhChHHHHHHhh-----CCEEEEEcc----CCCHHHHHHHH
Confidence 67775 4669999999 889999999999999999999999999999877 456777652 34689999999
Q ss_pred HHcCCccceeecCChhHHHHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHH
Q 001380 511 LRYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDL 564 (1089)
Q Consensus 511 ~~~~~~~~v~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~ 564 (1089)
++++++|+++.|.+.++++.|+|.++|+++|||++| +++++.|..+.+.+.+.
T Consensus 69 ~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~vid~~g-i~~~~~g~~~~~~~~~~ 121 (123)
T cd03011 69 QKKGYGFPVINDPDGVISARWGVSVTPAIVIVDPGG-IVFVTTGVTSEWGLRLR 121 (123)
T ss_pred HHcCCCccEEECCCcHHHHhCCCCcccEEEEEcCCC-eEEEEeccCCHHHHHhh
Confidence 999999999999999999999999999999999999 99999999888877543
No 87
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=99.71 E-value=8.3e-17 Score=171.59 Aligned_cols=150 Identities=18% Similarity=0.201 Sum_probs=112.0
Q ss_pred CCCCCCCCCCccccCCCCC--ceeeccccc-CCCEEEEEEe-cCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCC
Q 001380 424 RKTTPIVPEFPAKLDWLNT--APLQFRRDL-KGKVVVLDFW-TYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDN 499 (1089)
Q Consensus 424 ~~~g~~~P~f~~~~~~~~g--~~~~l~~~~-~gk~vll~Fw-a~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~ 499 (1089)
..+|+++|+|++... .+| ..+++ +++ +||++||+|| +.||++|..|++.|++++++|+++|++||+||. +.
T Consensus 68 ~~vGd~aPdF~l~~~-~~g~~~~vsL-sd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~---Ds 142 (261)
T PTZ00137 68 SLVGKLMPSFKGTAL-LNDDLVQFNS-SDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSV---DS 142 (261)
T ss_pred ccCCCCCCCCEeecc-cCCCceEEeH-HHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEC---CC
Confidence 468999999996531 244 46899 777 8999888888 899999999999999999999999999999987 22
Q ss_pred hhcHHHHHH-HHHH---cCCccceeecCChhHHHHhCCC-----ceeEEEEECCCCcEEEEecCC----CchhhHHHHHH
Q 001380 500 EKDLEAIRN-AVLR---YGISHPVVNDGDMNLWRELGVN-----SWPTFAVVGPNGKLLAQLAGE----GHRKDLDDLVE 566 (1089)
Q Consensus 500 ~~~~~~~~~-~~~~---~~~~~~v~~d~~~~l~~~~~v~-----~~Pt~~lid~~G~i~~~~~G~----~~~~~l~~~l~ 566 (1089)
.....+|.+ ..++ .+++||++.|.+.+++++||+. ..|++||||++|+|++.+... .+.+++.+.|+
T Consensus 143 ~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iakayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~ 222 (261)
T PTZ00137 143 PFSHKAWKELDVRQGGVSPLKFPLFSDISREVSKSFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFD 222 (261)
T ss_pred HHHHHHHHhhhhhhccccCcceEEEEcCChHHHHHcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHH
Confidence 223344443 2333 5788999999999999999985 589999999999999986322 23444444443
Q ss_pred HHHHHhccccccc
Q 001380 567 AALLFYGKKKLLD 579 (1089)
Q Consensus 567 ~~l~~~~~~~~l~ 579 (1089)
.++...+.|.+.
T Consensus 223 -alq~~~~~g~~c 234 (261)
T PTZ00137 223 -AVQFAEKTGNVC 234 (261)
T ss_pred -HhchhhhcCCCc
Confidence 334444444443
No 88
>PRK15000 peroxidase; Provisional
Probab=99.71 E-value=1e-16 Score=166.86 Aligned_cols=148 Identities=23% Similarity=0.297 Sum_probs=111.3
Q ss_pred CCCCCCCCCccccCCCCCce---eeccccc-CCCEEEEEEec-CCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCC
Q 001380 425 KTTPIVPEFPAKLDWLNTAP---LQFRRDL-KGKVVVLDFWT-YCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDN 499 (1089)
Q Consensus 425 ~~g~~~P~f~~~~~~~~g~~---~~l~~~~-~gk~vll~Fwa-~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~ 499 (1089)
.+|+++|+|++....-+|+. +++ +++ +||++||+||+ .||+.|+.|++.|++++++|+++++.||+||+ +.
T Consensus 3 ~vg~~aPdF~~~~~~~~g~~~~~~~l-~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~---D~ 78 (200)
T PRK15000 3 LVTRQAPDFTAAAVLGSGEIVDKFNF-KQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSF---DS 78 (200)
T ss_pred cCCCcCCCCEeecccCCCceeeeeeH-HHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEC---CC
Confidence 47999999996532223443 455 444 89999999998 59999999999999999999988999999987 33
Q ss_pred hhcHHHHHH-HHHHcC---CccceeecCChhHHHHhCCC------ceeEEEEECCCCcEEEEecCCC----chhhHHHHH
Q 001380 500 EKDLEAIRN-AVLRYG---ISHPVVNDGDMNLWRELGVN------SWPTFAVVGPNGKLLAQLAGEG----HRKDLDDLV 565 (1089)
Q Consensus 500 ~~~~~~~~~-~~~~~~---~~~~v~~d~~~~l~~~~~v~------~~Pt~~lid~~G~i~~~~~G~~----~~~~l~~~l 565 (1089)
......|.+ +.++.| ++||++.|++.++++.||+. .+|++||||++|+|++.+.+.. +.+++.+.|
T Consensus 79 ~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l 158 (200)
T PRK15000 79 EFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQKAYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMV 158 (200)
T ss_pred HHHHHHHHhhHHHhCCccccCceEEECCCcHHHHHcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHH
Confidence 344455544 445555 58999999999999999997 7999999999999999877643 344444444
Q ss_pred HHHHHHhccccc
Q 001380 566 EAALLFYGKKKL 577 (1089)
Q Consensus 566 ~~~l~~~~~~~~ 577 (1089)
+. ++...+.|.
T Consensus 159 ~a-l~~~~~~~~ 169 (200)
T PRK15000 159 DA-LQFHEEHGD 169 (200)
T ss_pred HH-hhhHHhcCC
Confidence 43 343333343
No 89
>PRK13191 putative peroxiredoxin; Provisional
Probab=99.71 E-value=7.3e-17 Score=169.48 Aligned_cols=138 Identities=14% Similarity=0.154 Sum_probs=110.1
Q ss_pred CCCCCCCCCCccccCCCCCceeecccccCCCEEEE-EEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhc
Q 001380 424 RKTTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVL-DFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKD 502 (1089)
Q Consensus 424 ~~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll-~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~ 502 (1089)
..+|+.+|+|++.. .+|+ +.+.++++||++|| +||++||+.|..|++.|++++++|+++|++||+||+ +....
T Consensus 7 ~~iG~~aPdF~l~~--~~G~-~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~---Ds~~~ 80 (215)
T PRK13191 7 PLIGEKFPEMEVIT--THGK-IKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSV---DSNIS 80 (215)
T ss_pred ccCCCcCCCCEeec--CCCC-EEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEEC---CCHHH
Confidence 45899999999653 4675 55535689997766 888999999999999999999999988999999997 44455
Q ss_pred HHHHHHHHHH---cCCccceeecCChhHHHHhCCC-------ceeEEEEECCCCcEEEEecCCC----chhhHHHHHHH
Q 001380 503 LEAIRNAVLR---YGISHPVVNDGDMNLWRELGVN-------SWPTFAVVGPNGKLLAQLAGEG----HRKDLDDLVEA 567 (1089)
Q Consensus 503 ~~~~~~~~~~---~~~~~~v~~d~~~~l~~~~~v~-------~~Pt~~lid~~G~i~~~~~G~~----~~~~l~~~l~~ 567 (1089)
..+|.+++++ ++++||++.|.++++++.||+. ..|++||||++|+|++.+.+.. +.+++.+.|+.
T Consensus 81 h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~a 159 (215)
T PRK13191 81 HIEWVMWIEKNLKVEVPFPIIADPMGNVAKRLGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRA 159 (215)
T ss_pred HHHHHhhHHHhcCCCCceEEEECCchHHHHHcCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHH
Confidence 5567777764 5788999999999999999974 4799999999999999865432 34444444443
No 90
>PRK06769 hypothetical protein; Validated
Probab=99.71 E-value=5.1e-17 Score=165.99 Aligned_cols=124 Identities=19% Similarity=0.277 Sum_probs=102.1
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCChH--------hHHHHHHHCCCCCCCccEEE-EcCCccCCCCCHHHHHHHHHHc
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSADRI--------KVDANLAAAGLPVSMFDAIV-SADAFENLKPAPDIFLSASKIL 235 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~--------~~~~~l~~~gl~~~~fd~i~-~~~~~~~~KP~~~~~~~~l~~l 235 (1089)
.++||+.++|++|+++|++++|+||.... .....++.+|+. .+|..+. ++++....||+|++|.++++++
T Consensus 28 ~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~~~l~~~g~~-~~~~~~~~~~~~~~~~KP~p~~~~~~~~~l 106 (173)
T PRK06769 28 TLFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIADFVQELKGFGFD-DIYLCPHKHGDGCECRKPSTGMLLQAAEKH 106 (173)
T ss_pred EECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHHHHHHHHhCCcC-EEEECcCCCCCCCCCCCCCHHHHHHHHHHc
Confidence 57999999999999999999999997531 234447777775 4433222 4566678999999999999999
Q ss_pred CCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCH-------HHHhhcCCcEEecCcccC
Q 001380 236 NVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSE-------ERLKEASPSLIRKEIGSV 289 (1089)
Q Consensus 236 gv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~-------~~l~~~~~d~vi~dl~el 289 (1089)
+++|++|+||||+.+|+++|+++||.+|+|.+|... +.+....|++++.++.++
T Consensus 107 ~~~p~~~i~IGD~~~Di~aA~~aGi~~i~v~~g~~~~~~~~~~~~l~~~~~~~~~~~~~el 167 (173)
T PRK06769 107 GLDLTQCAVIGDRWTDIVAAAKVNATTILVRTGAGYDALHTYRDKWAHIEPNYIAENFEDA 167 (173)
T ss_pred CCCHHHeEEEcCCHHHHHHHHHCCCeEEEEecCCCchhhhhhhcccccCCCcchhhCHHHH
Confidence 999999999999999999999999999999997632 345556799999998887
No 91
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=99.70 E-value=6e-16 Score=162.81 Aligned_cols=185 Identities=16% Similarity=0.160 Sum_probs=125.9
Q ss_pred ceEEEEecCCcccCCch-------HHHHHHHHHHHHcCCCCCHHhHhhhcCCC-HHHHHHHHHhhcC--CCCCCHHHHHH
Q 001380 79 VSAVLFDMDGVLCNSEE-------PSRRAAVDVFAEMGVEVTVEDFLPFMGTG-EANFLGGVASVKG--VKGFDSEAAKK 148 (1089)
Q Consensus 79 ~k~ViFD~DGTL~d~~~-------~~~~a~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~ 148 (1089)
+++|+||+.||++...- ..++.+.+.++.+.-+...+++..+.+.. ...+...+..... ........+-.
T Consensus 1 ~~~~l~diegt~~~isfv~~~lfpy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~k~~~lk~lqg 80 (220)
T TIGR01691 1 IKNVLLDIEGTTGSISFVHDVLFPYAASRLESFVNDNYESTIVENLRELGKTPEELILLRKLHAEMDKDRKATPLKTLQG 80 (220)
T ss_pred CCEEEEecCCCcccHHHHHhhhhHHHHHHHHHHHHHhCCCHHHHHHHHhccCCcHHHHHHHHHHHHHcCCCcchHHHHHH
Confidence 47899999999997442 12333444444433222333333333321 1233333332221 11112222222
Q ss_pred H-HHHHHHHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHC---CCCCCCccEEEEcCCccCCCCC
Q 001380 149 R-FFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAA---GLPVSMFDAIVSADAFENLKPA 224 (1089)
Q Consensus 149 ~-~~~~~~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~---gl~~~~fd~i~~~~~~~~~KP~ 224 (1089)
. |.+.|... .....++||+.++|++|+++|++++|+||++....+..++.. ++. .+|+.++... . ..||+
T Consensus 81 ~iw~~~Y~~~---~~~~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~~~~~~~~L~-~~f~~~fd~~-~-g~KP~ 154 (220)
T TIGR01691 81 LIWRQGYESG---ELTSHLYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLFGHSDAGNLT-PYFSGYFDTT-V-GLKTE 154 (220)
T ss_pred HHHHHHHhcC---CcccCcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhhccccchh-hhcceEEEeC-c-ccCCC
Confidence 2 33333221 223479999999999999999999999999998888888876 564 6788776532 3 36999
Q ss_pred HHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCC
Q 001380 225 PDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTL 269 (1089)
Q Consensus 225 ~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~ 269 (1089)
|++|.++++++|++|++|+||||+..|+++|+++||+++++.++.
T Consensus 155 p~~y~~i~~~lgv~p~e~lfVgDs~~Di~AA~~AG~~ti~v~r~g 199 (220)
T TIGR01691 155 AQSYVKIAGQLGSPPREILFLSDIINELDAARKAGLHTGQLVRPG 199 (220)
T ss_pred HHHHHHHHHHhCcChhHEEEEeCCHHHHHHHHHcCCEEEEEECCC
Confidence 999999999999999999999999999999999999999998754
No 92
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.70 E-value=1.3e-14 Score=166.14 Aligned_cols=279 Identities=17% Similarity=0.296 Sum_probs=189.0
Q ss_pred CCCCCceEEEeecCCeEEEEeC---CCCEEEEEeC--CCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEE
Q 001380 599 PLKFPGKLAIDILNNRLFISDS---NHNRIVVTDL--DGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYV 673 (1089)
Q Consensus 599 ~l~~P~~vavd~~~g~L~vsd~---~~~~I~~~~~--~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyV 673 (1089)
....|.-+++++.++.||+++. ..+.|..+.. +...+..+...... -..|..|++++++++|||
T Consensus 35 ~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~-----------g~~p~~i~~~~~g~~l~v 103 (345)
T PF10282_consen 35 EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSG-----------GSSPCHIAVDPDGRFLYV 103 (345)
T ss_dssp ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEES-----------SSCEEEEEECTTSSEEEE
T ss_pred CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccC-----------CCCcEEEEEecCCCEEEE
Confidence 4467889999999999999988 4677777654 41233333222111 137999999999999999
Q ss_pred EECCCCEEEEEECCC-CeEEEEec----CCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCC
Q 001380 674 ADTENHALREIDFVN-DTVRTLAG----NGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDG 748 (1089)
Q Consensus 674 aD~~n~~I~~~d~~~-g~v~~~ag----~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g 748 (1089)
|+...+.|..++++. |.+..... .|. + .....+.-..|+.+.++|+|+.+|++|.+.++|+.|+.+..
T Consensus 104 any~~g~v~v~~l~~~g~l~~~~~~~~~~g~-g------~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~ 176 (345)
T PF10282_consen 104 ANYGGGSVSVFPLDDDGSLGEVVQTVRHEGS-G------PNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDD 176 (345)
T ss_dssp EETTTTEEEEEEECTTSEEEEEEEEEESEEE-E------SSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TT
T ss_pred EEccCCeEEEEEccCCcccceeeeecccCCC-C------CcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCC
Confidence 999999998888865 55554421 111 0 11123445689999999999999999999999999987654
Q ss_pred e--EEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcC--CCCeEEEecCCCCCCCCcccc
Q 001380 749 V--TRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLK--TGGSRLLAGGDPIFPDNLFKF 824 (1089)
Q Consensus 749 ~--~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~--~~~~~~~~g~~~~~~~~l~~~ 824 (1089)
. +....... ...-..|+.|+++++|+++||++..+++|..++.. ++..+.+..-. ..+.
T Consensus 177 ~~~l~~~~~~~-----------~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~-~~~~----- 239 (345)
T PF10282_consen 177 TGKLTPVDSIK-----------VPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTIS-TLPE----- 239 (345)
T ss_dssp S-TEEEEEEEE-----------CSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEE-SCET-----
T ss_pred CceEEEeeccc-----------cccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEee-eccc-----
Confidence 4 43311100 01124699999999999999999999999999877 44333221100 0000
Q ss_pred CCCCCccccccccCceEEEEccCCc-EEEEeCCCCEEEEEeC--CCCeEEEEeccCCCCCCCCcccccccCCCceEEEcc
Q 001380 825 GDRDGMGSEVLLQHPLGVYCAKNGQ-IYVADSYNHKIKKLDP--ASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQ 901 (1089)
Q Consensus 825 g~~dg~~~~~~l~~P~gva~~~~G~-lyVaD~~n~~I~~~d~--~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~ 901 (1089)
+ ..+ -..|.+|++++||+ |||++.+.+.|..|+. +++.++.+..... .-..|.++++++
T Consensus 240 ~-~~~------~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~-----------~G~~Pr~~~~s~ 301 (345)
T PF10282_consen 240 G-FTG------ENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPT-----------GGKFPRHFAFSP 301 (345)
T ss_dssp T-SCS------SSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEE-----------SSSSEEEEEE-T
T ss_pred c-ccc------cCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeC-----------CCCCccEEEEeC
Confidence 0 001 13799999999994 9999999999888764 6677766643211 124599999999
Q ss_pred CCc-EEEEECCCCEEEEEeCCCCCceEEEE
Q 001380 902 NGN-LFIADTNNNIIRYLDLNKEEPELQTL 930 (1089)
Q Consensus 902 ~G~-lyVad~~n~~I~~~~~~~~~~~~~~l 930 (1089)
+|+ |||++...+.|.+|+.+..+..+..+
T Consensus 302 ~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~ 331 (345)
T PF10282_consen 302 DGRYLYVANQDSNTVSVFDIDPDTGKLTPV 331 (345)
T ss_dssp TSSEEEEEETTTTEEEEEEEETTTTEEEEE
T ss_pred CCCEEEEEecCCCeEEEEEEeCCCCcEEEe
Confidence 996 99999999999999886554344443
No 93
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=99.70 E-value=1.1e-16 Score=167.80 Aligned_cols=135 Identities=18% Similarity=0.263 Sum_probs=105.5
Q ss_pred CCCCCCCCccccCCCCCceeecccccCC-CEE-EEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcH
Q 001380 426 TTPIVPEFPAKLDWLNTAPLQFRRDLKG-KVV-VLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDL 503 (1089)
Q Consensus 426 ~g~~~P~f~~~~~~~~g~~~~l~~~~~g-k~v-ll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~ 503 (1089)
+|+.+|+|++.. .+| .+++ ++++| |++ |++||++||+.|..+++.|++++++|++.++.+|+||+ +.....
T Consensus 1 vG~~aP~F~~~~--~~g-~~~l-~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~---D~~~~~ 73 (203)
T cd03016 1 LGDTAPNFEADT--THG-PIKF-HDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSV---DSVESH 73 (203)
T ss_pred CcCCCCCeEEec--CCC-cEeH-HHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEEC---CCHHHH
Confidence 588999999653 356 5888 88888 765 55899999999999999999999999988999999987 333334
Q ss_pred HHHHHHHHH---cCCccceeecCChhHHHHhCCC--------ceeEEEEECCCCcEEEEecCCC----chhhHHHHHHH
Q 001380 504 EAIRNAVLR---YGISHPVVNDGDMNLWRELGVN--------SWPTFAVVGPNGKLLAQLAGEG----HRKDLDDLVEA 567 (1089)
Q Consensus 504 ~~~~~~~~~---~~~~~~v~~d~~~~l~~~~~v~--------~~Pt~~lid~~G~i~~~~~G~~----~~~~l~~~l~~ 567 (1089)
.+|.+.+++ .+++||++.|.++++++.||+. ..|++||||++|+|++.+.+.. +.+++.+.|+.
T Consensus 74 ~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg~~~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~ 152 (203)
T cd03016 74 IKWIEDIEEYTGVEIPFPIIADPDREVAKLLGMIDPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDA 152 (203)
T ss_pred HHHHhhHHHhcCCCCceeEEECchHHHHHHcCCccccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence 444443333 6899999999999999999985 2467999999999999976643 34445455544
No 94
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.69 E-value=1.1e-16 Score=160.17 Aligned_cols=117 Identities=23% Similarity=0.334 Sum_probs=100.2
Q ss_pred CCCCCccccCCCCCceeecccccC-CCEEEE-EEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHH
Q 001380 429 IVPEFPAKLDWLNTAPLQFRRDLK-GKVVVL-DFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAI 506 (1089)
Q Consensus 429 ~~P~f~~~~~~~~g~~~~l~~~~~-gk~vll-~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~ 506 (1089)
.+|+|++ .+++|+.+++ +++. +|++|| +||++||++|+.++|.|+++++++++.++.+|+|+. ++.+..
T Consensus 1 ~~p~f~l--~~~~g~~~~l-~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~------~~~~~~ 71 (149)
T cd02970 1 TAPDFEL--PDAGGETVTL-SALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGP------ESPEKL 71 (149)
T ss_pred CCCCccc--cCCCCCEEch-HHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeC------CCHHHH
Confidence 3789985 4569999999 6664 465555 456999999999999999999999988999999975 334556
Q ss_pred HHHHHHcCCccceeecCChhHHHHhCCC-----------------------------ceeEEEEECCCCcEEEEecC
Q 001380 507 RNAVLRYGISHPVVNDGDMNLWRELGVN-----------------------------SWPTFAVVGPNGKLLAQLAG 554 (1089)
Q Consensus 507 ~~~~~~~~~~~~v~~d~~~~l~~~~~v~-----------------------------~~Pt~~lid~~G~i~~~~~G 554 (1089)
.++.++++++||++.|++..+++.||+. .+|++||||++|+|++.+.|
T Consensus 72 ~~~~~~~~~~~p~~~D~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~~~~ 148 (149)
T cd02970 72 EAFDKGKFLPFPVYADPDRKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFAHVD 148 (149)
T ss_pred HHHHHhcCCCCeEEECCchhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEEecC
Confidence 6899999999999999999999999984 79999999999999999876
No 95
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=99.69 E-value=1.3e-16 Score=157.92 Aligned_cols=120 Identities=21% Similarity=0.259 Sum_probs=107.7
Q ss_pred CCCCCccccCCCCCceeecccccCCCEEEEEEe-cCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHH
Q 001380 429 IVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFW-TYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIR 507 (1089)
Q Consensus 429 ~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fw-a~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~ 507 (1089)
.+|+|++ .+++|+.+++ ++++||++||+|| +.||+.|..++|.|++++++|++.++.+|+|+. ++.+.++
T Consensus 1 ~~p~f~l--~~~~g~~~~l-~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~------d~~~~~~ 71 (140)
T cd02971 1 KAPDFTL--PATDGGEVSL-SDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSV------DSPFSHK 71 (140)
T ss_pred CCCCcee--ccCCCcEEeh-HHhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeC------CCHHHHH
Confidence 3788985 4669999999 8999999999999 789999999999999999999877899999975 4667899
Q ss_pred HHHHHc-CCccceeecCChhHHHHhCCCcee---------EEEEECCCCcEEEEecCCCc
Q 001380 508 NAVLRY-GISHPVVNDGDMNLWRELGVNSWP---------TFAVVGPNGKLLAQLAGEGH 557 (1089)
Q Consensus 508 ~~~~~~-~~~~~v~~d~~~~l~~~~~v~~~P---------t~~lid~~G~i~~~~~G~~~ 557 (1089)
++++++ +.+|+++.|++..+++.||+...| ++||||++|+|++++.|...
T Consensus 72 ~~~~~~~~~~~~~l~D~~~~~~~~~g~~~~~~~~~~~~~p~~~lid~~g~i~~~~~~~~~ 131 (140)
T cd02971 72 AWAEKEGGLNFPLLSDPDGEFAKAYGVLIEKSAGGGLAARATFIIDPDGKIRYVEVEPLP 131 (140)
T ss_pred HHHhcccCCCceEEECCChHHHHHcCCccccccccCceeEEEEEECCCCcEEEEEecCCC
Confidence 999999 999999999999999999988655 89999999999999988754
No 96
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.69 E-value=8.1e-17 Score=157.29 Aligned_cols=105 Identities=24% Similarity=0.324 Sum_probs=89.5
Q ss_pred CCc-eeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCC--CEEEEEEeCCCCCChhcHHHHHHHHHHcCCcc
Q 001380 441 NTA-PLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDM--PFTVVGVHSAKFDNEKDLEAIRNAVLRYGISH 517 (1089)
Q Consensus 441 ~g~-~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~--~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (1089)
+|+ ++++ ++++||++||+||++||++|+.++|.|++++++++++ ++.+++|++ +++.+.+++++++++ .|
T Consensus 5 ~~~~~v~l-~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~-----d~~~~~~~~~~~~~~-~~ 77 (132)
T cd02964 5 DGEGVVPV-SALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSR-----DRSEESFNEYFSEMP-PW 77 (132)
T ss_pred cCCccccH-HHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEec-----CCCHHHHHHHHhcCC-Ce
Confidence 455 8999 9999999999999999999999999999999999864 799999975 456788999999998 65
Q ss_pred cee--ec--CChhHHHHhCCCceeEEEEECCCCcEEEEe
Q 001380 518 PVV--ND--GDMNLWRELGVNSWPTFAVVGPNGKLLAQL 552 (1089)
Q Consensus 518 ~v~--~d--~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~ 552 (1089)
..+ .| ....+++.|+|.++|+++|||++|+|+.+.
T Consensus 78 ~~~~~~d~~~~~~~~~~~~v~~iPt~~lid~~G~iv~~~ 116 (132)
T cd02964 78 LAVPFEDEELRELLEKQFKVEGIPTLVVLKPDGDVVTTN 116 (132)
T ss_pred EeeccCcHHHHHHHHHHcCCCCCCEEEEECCCCCEEchh
Confidence 433 22 235788899999999999999999998763
No 97
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=99.69 E-value=3.1e-16 Score=174.58 Aligned_cols=199 Identities=14% Similarity=0.133 Sum_probs=141.5
Q ss_pred CCCceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH
Q 001380 76 WGKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIYL 155 (1089)
Q Consensus 76 ~~~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (1089)
.+.+++|+|||||||+.. +++.++++.+|.+.....++.....+...+.+.+..+........+...+.+ .
T Consensus 107 ~~~~~LvvfDmDGTLI~~-----e~i~eia~~~g~~~~v~~it~~~m~Geldf~esl~~rv~~l~g~~~~il~~v----~ 177 (322)
T PRK11133 107 LRTPGLLVMDMDSTAIQI-----ECIDEIAKLAGTGEEVAEVTERAMRGELDFEASLRQRVATLKGADANILQQV----R 177 (322)
T ss_pred ccCCCEEEEECCCCCcch-----HHHHHHHHHhCCchHHHHHHHHHHcCCcCHHHHHHHHHHHhCCCCHHHHHHH----H
Confidence 367899999999999943 4788888888887766666665555544444443332221111222222222 1
Q ss_pred HHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCcc-------EEEEcC---CccCCCCCH
Q 001380 156 DKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFD-------AIVSAD---AFENLKPAP 225 (1089)
Q Consensus 156 ~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd-------~i~~~~---~~~~~KP~~ 225 (1089)
+. .+++||++++|+.|++.|++++|+|+++....+.+++++++. ..+. ..+++. +....|||+
T Consensus 178 ~~------l~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~~l~~~Lgld-~~~an~lei~dg~ltg~v~g~iv~~k~K~ 250 (322)
T PRK11133 178 EN------LPLMPGLTELVLKLQALGWKVAIASGGFTYFADYLRDKLRLD-AAVANELEIMDGKLTGNVLGDIVDAQYKA 250 (322)
T ss_pred Hh------CCCChhHHHHHHHHHHcCCEEEEEECCcchhHHHHHHHcCCC-eEEEeEEEEECCEEEeEecCccCCcccHH
Confidence 11 278999999999999999999999999999999999999986 4332 222222 233579999
Q ss_pred HHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccCCHHHHHhcc
Q 001380 226 DIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDILTGG 298 (1089)
Q Consensus 226 ~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~i~~ll~~~ 298 (1089)
+.++++++++|+++++|++|||+.+|+.|++.||+..++ + ..+.++ ..+++++. ..+| ..+|..+
T Consensus 251 ~~L~~la~~lgi~~~qtIaVGDg~NDl~m~~~AGlgiA~-n---Akp~Vk-~~Ad~~i~-~~~l--~~~l~~~ 315 (322)
T PRK11133 251 DTLTRLAQEYEIPLAQTVAIGDGANDLPMIKAAGLGIAY-H---AKPKVN-EQAQVTIR-HADL--MGVLCIL 315 (322)
T ss_pred HHHHHHHHHcCCChhhEEEEECCHHHHHHHHHCCCeEEe-C---CCHHHH-hhCCEEec-CcCH--HHHHHHh
Confidence 999999999999999999999999999999999986655 2 334443 47888886 4344 5555554
No 98
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=99.69 E-value=1e-16 Score=159.07 Aligned_cols=120 Identities=25% Similarity=0.331 Sum_probs=104.2
Q ss_pred CCCCCccccCCCCCceeecccccCCCEEEEEEecCCCcc-hhhhhhhHHHHHHHcCCCC---EEEEEEeCCCCCCh-hcH
Q 001380 429 IVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCIN-CMHVLPDLEFLEKKYKDMP---FTVVGVHSAKFDNE-KDL 503 (1089)
Q Consensus 429 ~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~-C~~~~p~l~~l~~~~~~~~---v~vi~v~~~~~~~~-~~~ 503 (1089)
.+|+|++. +.+|+++++ .+++||++||+||++||++ |..+++.|+++++++++.+ +.+|+|+.+ .+ +++
T Consensus 1 ~~p~f~l~--~~~g~~~~l-~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d---~~~d~~ 74 (142)
T cd02968 1 IGPDFTLT--DQDGRPVTL-SDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD---PERDTP 74 (142)
T ss_pred CCCceEEE--cCCCCEEch-HHhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC---CCCCCH
Confidence 37899864 459999999 8889999999999999998 9999999999999998754 999999873 33 678
Q ss_pred HHHHHHHHHcCCccceeecCC---hhHHHHhCCCce--------------eEEEEECCCCcEEEEecC
Q 001380 504 EAIRNAVLRYGISHPVVNDGD---MNLWRELGVNSW--------------PTFAVVGPNGKLLAQLAG 554 (1089)
Q Consensus 504 ~~~~~~~~~~~~~~~v~~d~~---~~l~~~~~v~~~--------------Pt~~lid~~G~i~~~~~G 554 (1089)
+.+++++++++.+|+++.|+. ..+++.||+... |++||||++|+|+..+.|
T Consensus 75 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~~ 142 (142)
T cd02968 75 EVLKAYAKAFGPGWIGLTGTPEEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVRYYGG 142 (142)
T ss_pred HHHHHHHHHhCCCcEEEECCHHHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEEeecC
Confidence 899999999999999999875 689999997644 579999999999988754
No 99
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.68 E-value=8.9e-17 Score=156.98 Aligned_cols=109 Identities=20% Similarity=0.302 Sum_probs=90.8
Q ss_pred CCCCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCC--CEEEEEEeCCCCCChhcHHHHHHHHHHcCC
Q 001380 438 DWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDM--PFTVVGVHSAKFDNEKDLEAIRNAVLRYGI 515 (1089)
Q Consensus 438 ~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~--~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~ 515 (1089)
.+.+|+.+++ ++++||+|||+||++||++|+.++|.|+++++++++. ++.+++|+. +++.+.+++++++++.
T Consensus 4 ~~~~G~~v~l-~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~-----d~~~~~~~~~~~~~~~ 77 (131)
T cd03009 4 LRNDGGKVPV-SSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISW-----DRDEESFNDYFSKMPW 77 (131)
T ss_pred cccCCCCccH-HHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEEC-----CCCHHHHHHHHHcCCe
Confidence 3569999999 8999999999999999999999999999999998754 799999976 4456788888887652
Q ss_pred c-ccee-ecCChhHHHHhCCCceeEEEEECCCCcEEEEe
Q 001380 516 S-HPVV-NDGDMNLWRELGVNSWPTFAVVGPNGKLLAQL 552 (1089)
Q Consensus 516 ~-~~v~-~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~ 552 (1089)
. ++.. .|....+++.|+|.++|+++|||++|+++.+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 116 (131)
T cd03009 78 LAVPFSDRERRSRLNRTFKIEGIPTLIILDADGEVVTTD 116 (131)
T ss_pred eEcccCCHHHHHHHHHHcCCCCCCEEEEECCCCCEEccc
Confidence 1 2221 24456899999999999999999999998763
No 100
>PRK13189 peroxiredoxin; Provisional
Probab=99.67 E-value=4.5e-16 Score=164.56 Aligned_cols=138 Identities=17% Similarity=0.237 Sum_probs=106.4
Q ss_pred CCCCCCCCCCccccCCCCCceeecccccCCCEEE-EEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhc
Q 001380 424 RKTTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVV-LDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKD 502 (1089)
Q Consensus 424 ~~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vl-l~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~ 502 (1089)
..+|+.+|+|++.. .+|. +++.+.++||++| ++||++||+.|..|++.|++++++|++.++.||+||+ +....
T Consensus 9 ~~vG~~aPdF~~~~--~~g~-~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~---D~~~~ 82 (222)
T PRK13189 9 PLIGDKFPEFEVKT--THGP-IKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSI---DQVFS 82 (222)
T ss_pred ccCCCcCCCcEeEc--CCCC-EeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEC---CCHHH
Confidence 46899999999653 4664 6773446999655 5788999999999999999999999988999999987 33334
Q ss_pred HHHHHHHHHH---cCCccceeecCChhHHHHhCCC-------ceeEEEEECCCCcEEEEecCCC----chhhHHHHHHH
Q 001380 503 LEAIRNAVLR---YGISHPVVNDGDMNLWRELGVN-------SWPTFAVVGPNGKLLAQLAGEG----HRKDLDDLVEA 567 (1089)
Q Consensus 503 ~~~~~~~~~~---~~~~~~v~~d~~~~l~~~~~v~-------~~Pt~~lid~~G~i~~~~~G~~----~~~~l~~~l~~ 567 (1089)
..+|.+...+ .+++||++.|.+++++++||+. .+|++||||++|+|++.+.+.. +.+++.+.|+.
T Consensus 83 h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~a 161 (222)
T PRK13189 83 HIKWVEWIKEKLGVEIEFPIIADDRGEIAKKLGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKA 161 (222)
T ss_pred HHHHHHhHHHhcCcCcceeEEEcCccHHHHHhCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence 4455443332 3578999999999999999985 5799999999999998865433 34555555554
No 101
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.67 E-value=4.1e-16 Score=155.90 Aligned_cols=120 Identities=20% Similarity=0.205 Sum_probs=101.0
Q ss_pred CCCCCCCCccccCCCCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHH
Q 001380 426 TTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEA 505 (1089)
Q Consensus 426 ~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~ 505 (1089)
.....|+|++ . +|+.+++ ++++ ||+||++||++|++++|.|++++++| ++.|++|+++ .+.
T Consensus 51 ~~~~~~~f~l--~--dG~~v~l-sd~~----lV~FwaswCp~C~~e~P~L~~l~~~~---g~~Vi~Vs~D---~~~---- 111 (181)
T PRK13728 51 EKPAPRWFRL--S--NGRQVNL-ADWK----VVLFMQGHCPYCHQFDPVLKQLAQQY---GFSVFPYTLD---GQG---- 111 (181)
T ss_pred CCCCCCccCC--C--CCCEeeh-hHce----EEEEECCCCHhHHHHHHHHHHHHHHc---CCEEEEEEeC---CCC----
Confidence 4456778884 3 8999999 8887 77899999999999999999999998 4899999863 111
Q ss_pred HHHHHHHcCCccceeec-CChhHHHHhCC--CceeEEEEECCCCcEEE-EecCCCchhhHHHHHHHHHHHh
Q 001380 506 IRNAVLRYGISHPVVND-GDMNLWRELGV--NSWPTFAVVGPNGKLLA-QLAGEGHRKDLDDLVEAALLFY 572 (1089)
Q Consensus 506 ~~~~~~~~~~~~~v~~d-~~~~l~~~~~v--~~~Pt~~lid~~G~i~~-~~~G~~~~~~l~~~l~~~l~~~ 572 (1089)
.+.||++.| ....+.+.|++ .++|++||||++|++++ .+.|..+.+++++.|+++++..
T Consensus 112 --------~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~~~~~~G~~~~~~L~~~I~~ll~~~ 174 (181)
T PRK13728 112 --------DTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEALPLLQGATDAAGFMARMDTVLQMY 174 (181)
T ss_pred --------CCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEEEEEEECCCCHHHHHHHHHHHHhhh
Confidence 268999985 66778889995 69999999999999975 6999999999999999988763
No 102
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=99.67 E-value=5.7e-17 Score=163.19 Aligned_cols=110 Identities=13% Similarity=0.081 Sum_probs=98.5
Q ss_pred CCCCccHHHHHHHHHhCCCeEEEEcCC-ChHhHHHHHHHCCCCC---------CCccEEEEcCCccCCCCCHHHHHHHHH
Q 001380 164 GIGFPGALELINQCKSKGLKVAVASSA-DRIKVDANLAAAGLPV---------SMFDAIVSADAFENLKPAPDIFLSASK 233 (1089)
Q Consensus 164 ~~~~pG~~~lL~~Lk~~Gi~vaIvSn~-~~~~~~~~l~~~gl~~---------~~fd~i~~~~~~~~~KP~~~~~~~~l~ 233 (1089)
..++||+.++|+.|+++|++++|+||+ ....++..++.+++ . .+|+.++++++....||.+.+++++.+
T Consensus 44 ~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~~~~~L~~~~l-~~~~~~~~~~~~Fd~iv~~~~~~~~kp~~~i~~~~~~ 122 (174)
T TIGR01685 44 VTLIKEVRDVLQTLKDAGTYLATASWNDVPEWAYEILGTFEI-TYAGKTVPMHSLFDDRIEIYKPNKAKQLEMILQKVNK 122 (174)
T ss_pred EEEcccHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHhCCc-CCCCCcccHHHhceeeeeccCCchHHHHHHHHHHhhh
Confidence 378999999999999999999999998 88888999999998 4 789999999887777888888888888
Q ss_pred Hc--CCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHH
Q 001380 234 IL--NVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERL 274 (1089)
Q Consensus 234 ~l--gv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l 274 (1089)
.+ |++|++|+||||+..|+++|+++|++++++.+|.....+
T Consensus 123 ~~~~gl~p~e~l~VgDs~~di~aA~~aGi~~i~v~~g~~~~~~ 165 (174)
T TIGR01685 123 VDPSVLKPAQILFFDDRTDNVREVWGYGVTSCYCPSGMDKGTF 165 (174)
T ss_pred cccCCCCHHHeEEEcChhHhHHHHHHhCCEEEEcCCCccHHHH
Confidence 87 899999999999999999999999999999998754443
No 103
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=99.67 E-value=6e-16 Score=157.35 Aligned_cols=137 Identities=17% Similarity=0.243 Sum_probs=110.3
Q ss_pred CCCCCccccCCCCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCCh--hcHHHH
Q 001380 429 IVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNE--KDLEAI 506 (1089)
Q Consensus 429 ~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~--~~~~~~ 506 (1089)
.+++|+. .+++|+.++| ++++||+|||+|||+||++|. ++|.|++|+++|+++|+.||||++..|..+ ++.+++
T Consensus 4 ~~~~f~~--~~~~G~~v~L-s~~~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei 79 (183)
T PRK10606 4 SILTTVV--TTIDGEVTTL-EKYAGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEI 79 (183)
T ss_pred CccCcEe--ECCCCCEEeH-HHhCCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHH
Confidence 4677875 4679999999 999999999999999999996 799999999999999999999998776543 577899
Q ss_pred HHHHH-HcCCcccee--ecCC----hhHHHHhC------------------------------CCceeEEEEECCCCcEE
Q 001380 507 RNAVL-RYGISHPVV--NDGD----MNLWRELG------------------------------VNSWPTFAVVGPNGKLL 549 (1089)
Q Consensus 507 ~~~~~-~~~~~~~v~--~d~~----~~l~~~~~------------------------------v~~~Pt~~lid~~G~i~ 549 (1089)
++|++ +++++||++ .|.+ ..+++.+. |.+-=+-||||++|+++
T Consensus 80 ~~f~~~~~g~~Fpv~~k~dvnG~~~~pl~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~WNF~KFLv~~~G~vv 159 (183)
T PRK10606 80 KTYCRTTWGVTFPMFSKIEVNGEGRHPLYQKLIAAAPTAVAPEESGFYARMVSKGRAPLYPDDILWNFEKFLVGRDGQVI 159 (183)
T ss_pred HHHHHHccCCCceeEEEEccCCCCCCHHHHHHHHhCCCCcCccccchhhhhhccccccccCCcccccCEEEEECCCCcEE
Confidence 99997 799999998 3332 23444331 12223589999999999
Q ss_pred EEecCCCchhh--HHHHHHHHH
Q 001380 550 AQLAGEGHRKD--LDDLVEAAL 569 (1089)
Q Consensus 550 ~~~~G~~~~~~--l~~~l~~~l 569 (1089)
.++.....+.+ +++.|+++|
T Consensus 160 ~r~~~~~~p~~~~i~~~i~~~l 181 (183)
T PRK10606 160 QRFSPDMTPEDPIVMESIKLAL 181 (183)
T ss_pred EEECCCCCCCHHHHHHHHHHHh
Confidence 99888777666 888887766
No 104
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=99.66 E-value=5.6e-16 Score=163.56 Aligned_cols=102 Identities=16% Similarity=0.066 Sum_probs=87.6
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCC----------CCHHHHHHHHHH
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLK----------PAPDIFLSASKI 234 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~K----------P~~~~~~~~l~~ 234 (1089)
.++||+.++|+.|+++|++++|+||+....++.+++.+|+. .+|+..+..++.+..+ ++++.+.+++++
T Consensus 80 ~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~-~~~~~~~~~~~~g~~~p~~~~~~~~~~k~~~~~~~~~~ 158 (201)
T TIGR01491 80 SLRDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKLNPD-YVYSNELVFDEKGFIQPDGIVRVTFDNKGEAVERLKRE 158 (201)
T ss_pred CCCccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhCCC-eEEEEEEEEcCCCeEecceeeEEccccHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999996 7777666655444333 334688899999
Q ss_pred cCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcC
Q 001380 235 LNVPTSECIVIEDALAGVQAAKAAQMRCIAVTT 267 (1089)
Q Consensus 235 lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~ 267 (1089)
+|+++++++||||+.+|+.+|+.+|+.++....
T Consensus 159 ~~~~~~~~i~iGDs~~D~~~a~~ag~~~a~~~~ 191 (201)
T TIGR01491 159 LNPSLTETVAVGDSKNDLPMFEVADISISLGDE 191 (201)
T ss_pred hCCCHHHEEEEcCCHhHHHHHHhcCCeEEECCC
Confidence 999999999999999999999999997665543
No 105
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=99.66 E-value=8.9e-16 Score=152.72 Aligned_cols=102 Identities=26% Similarity=0.338 Sum_probs=87.4
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCCh---------------HhHHHHHHHCCCCCCCccEEEE----cCCccCCCCCH
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSADR---------------IKVDANLAAAGLPVSMFDAIVS----ADAFENLKPAP 225 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~---------------~~~~~~l~~~gl~~~~fd~i~~----~~~~~~~KP~~ 225 (1089)
.++||+.++|+.|+++|++++|+||..+ ..+...++++++. .. ..+++ ++.....||+|
T Consensus 27 ~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~-~~~~~~~~~~~~~~~~KP~~ 104 (147)
T TIGR01656 27 QLRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRAPNGRVLELLRQLGVA-VD-GVLFCPHHPADNCSCRKPKP 104 (147)
T ss_pred EEcCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHHHHHHHHHHHHhCCCc-ee-EEEECCCCCCCCCCCCCCCH
Confidence 5799999999999999999999999763 5677788899985 21 22222 34556689999
Q ss_pred HHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCC
Q 001380 226 DIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTT 268 (1089)
Q Consensus 226 ~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g 268 (1089)
++|+++++++|+++++|+||||+..|+++|+++||++++|..|
T Consensus 105 ~~~~~~~~~~~~~~~e~i~IGDs~~Di~~A~~~Gi~~v~i~~~ 147 (147)
T TIGR01656 105 GLILEALKRLGVDASRSLVVGDRLRDLQAARNAGLAAVLLVDG 147 (147)
T ss_pred HHHHHHHHHcCCChHHEEEEcCCHHHHHHHHHCCCCEEEecCC
Confidence 9999999999999999999999999999999999999999764
No 106
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.66 E-value=9.8e-16 Score=145.50 Aligned_cols=113 Identities=38% Similarity=0.681 Sum_probs=102.8
Q ss_pred cCCCCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCc
Q 001380 437 LDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGIS 516 (1089)
Q Consensus 437 ~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~ 516 (1089)
+.+++|+.+++ ++++||++||.||++||++|+..++.|.++.+++++.++.+++|+++ .+ +.+.+++++++++.+
T Consensus 4 ~~~~~g~~~~~-~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d---~~-~~~~~~~~~~~~~~~ 78 (116)
T cd02966 4 LPDLDGKPVSL-SDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVD---DD-DPAAVKAFLKKYGIT 78 (116)
T ss_pred ccCCCCCEeeh-HHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECC---CC-CHHHHHHHHHHcCCC
Confidence 34568999999 88899999999999999999999999999999998778999999762 11 589999999999999
Q ss_pred cceeecCChhHHHHhCCCceeEEEEECCCCcEEEEecC
Q 001380 517 HPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAG 554 (1089)
Q Consensus 517 ~~v~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~G 554 (1089)
|+++.|...++.+.|++.++|+++|+|++|++++++.|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 79 FPVLLDPDGELAKAYGVRGLPTTFLIDRDGRIRARHVG 116 (116)
T ss_pred cceEEcCcchHHHhcCcCccceEEEECCCCcEEEEecC
Confidence 99999999999999999999999999999999998765
No 107
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=99.66 E-value=7.3e-16 Score=161.27 Aligned_cols=142 Identities=16% Similarity=0.233 Sum_probs=109.6
Q ss_pred ccCCCCCCCCCCcccc--CCCCCceeecccccCCCEEEEEEe-cCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCC
Q 001380 422 ENRKTTPIVPEFPAKL--DWLNTAPLQFRRDLKGKVVVLDFW-TYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFD 498 (1089)
Q Consensus 422 ~~~~~g~~~P~f~~~~--~~~~g~~~~l~~~~~gk~vll~Fw-a~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~ 498 (1089)
....+|+++|+|++.. .+.+|++++| ++++||++||+|| +.||+.|..+++.|.+++++|+++++.||+||+ +
T Consensus 4 ~~~~~G~~aPdF~~~~~~~~~~~~~v~l-~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~---d 79 (199)
T PTZ00253 4 GDAKINHPAPSFEEVALMPNGSFKKISL-SSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSM---D 79 (199)
T ss_pred cccccCCcCCCCEeeccccCCCCcEEeH-HHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeC---C
Confidence 3456899999999642 2346678999 8999999999999 488999999999999999999999999999987 3
Q ss_pred ChhcHHHHHHHHHH----cCCccceeecCChhHHHHhCCC------ceeEEEEECCCCcEEEEecCCCc-hhhHHHHHHH
Q 001380 499 NEKDLEAIRNAVLR----YGISHPVVNDGDMNLWRELGVN------SWPTFAVVGPNGKLLAQLAGEGH-RKDLDDLVEA 567 (1089)
Q Consensus 499 ~~~~~~~~~~~~~~----~~~~~~v~~d~~~~l~~~~~v~------~~Pt~~lid~~G~i~~~~~G~~~-~~~l~~~l~~ 567 (1089)
......+|....+. .+++||++.|.+.++++.||+. .+|++||||++|+|++.+.+... ...+++.++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~ 159 (199)
T PTZ00253 80 SEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIARSYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRL 159 (199)
T ss_pred CHHHHHHHHhChHhhCCccccccceEECcHhHHHHHcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHH
Confidence 33333344322111 1478999999999999999985 47999999999999998766432 2244444433
No 108
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=99.65 E-value=1.9e-15 Score=160.12 Aligned_cols=145 Identities=19% Similarity=0.119 Sum_probs=111.7
Q ss_pred EEEEecCCcccCCchHHHHHHHHHHHHcCCC-CCHHhHhhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHhc
Q 001380 81 AVLFDMDGVLCNSEEPSRRAAVDVFAEMGVE-VTVEDFLPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIYLDKYA 159 (1089)
Q Consensus 81 ~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (1089)
+|+||+||||+|+...+ .+|.. .+.+++..+.+. .+.+.|.+...
T Consensus 65 aViFDlDgTLlDSs~~~---------~~G~~~~s~~~~~~l~g~-------------------------~~w~~~~~~~~ 110 (237)
T TIGR01672 65 AVSFDIDDTVLFSSPGF---------WRGKKTFSPGSEDYLKNQ-------------------------VFWEKVNNGWD 110 (237)
T ss_pred EEEEeCCCccccCcHHH---------hCCcccCCHHHhhhhcCh-------------------------HHHHHHHHhcc
Confidence 99999999999999754 15554 233333322221 22233322222
Q ss_pred CCCCCCCCccHHHHHHHHHhCCCeEEEEcCC----ChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHc
Q 001380 160 KPNSGIGFPGALELINQCKSKGLKVAVASSA----DRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKIL 235 (1089)
Q Consensus 160 ~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~----~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~l 235 (1089)
. ...+.+++.++|++|+++|++++|+||. ....++.+++.+|++ .+|+.+++++.....||++. .+++++
T Consensus 111 ~--~s~p~~~a~elL~~l~~~G~~i~iVTnr~~~k~~~~a~~ll~~lGi~-~~f~~i~~~d~~~~~Kp~~~---~~l~~~ 184 (237)
T TIGR01672 111 E--FSIPKEVARQLIDMHQRRGDAIFFVTGRTPGKTDTVSKTLAKNFHIP-AMNPVIFAGDKPGQYQYTKT---QWIQDK 184 (237)
T ss_pred c--CCcchhHHHHHHHHHHHCCCEEEEEeCCCCCcCHHHHHHHHHHhCCc-hheeEEECCCCCCCCCCCHH---HHHHhC
Confidence 2 2267778999999999999999999998 566888889999997 89999999998877888875 356777
Q ss_pred CCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCC
Q 001380 236 NVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTL 269 (1089)
Q Consensus 236 gv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~ 269 (1089)
++ ++||||+.+|+.+|+++|++++.|.+|.
T Consensus 185 ~i----~i~vGDs~~DI~aAk~AGi~~I~V~~g~ 214 (237)
T TIGR01672 185 NI----RIHYGDSDNDITAAKEAGARGIRILRAS 214 (237)
T ss_pred CC----eEEEeCCHHHHHHHHHCCCCEEEEEecC
Confidence 76 7999999999999999999999999986
No 109
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=99.65 E-value=1.6e-13 Score=158.64 Aligned_cols=249 Identities=22% Similarity=0.343 Sum_probs=196.1
Q ss_pred CCCceEEEeecCCeEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCE
Q 001380 601 KFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHA 680 (1089)
Q Consensus 601 ~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~ 680 (1089)
..|.++++.+.+..+||++..++.+..++..-..+......+ +..|+|+++++.|+.+||.+..++.
T Consensus 31 ~~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g-------------~~~p~~i~v~~~~~~vyv~~~~~~~ 97 (381)
T COG3391 31 RGPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVG-------------GVYPAGVAVNPAGNKVYVTTGDSNT 97 (381)
T ss_pred CCCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCC-------------CccccceeeCCCCCeEEEecCCCCe
Confidence 389999999977799999998887777776533333322211 1589999999999999999999999
Q ss_pred EEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEEC--CCcEEEEEECCCCeEEEEeCCCc
Q 001380 681 LREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMA--GQHQIWEHSTVDGVTRAFSGDGY 758 (1089)
Q Consensus 681 I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~--~~~~I~~~~~~~g~~~~~~g~g~ 758 (1089)
|.++|..+.++......|. .|.+++++++++.+||++. +++.+.++|..++.+....-.|
T Consensus 98 v~vid~~~~~~~~~~~vG~-----------------~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG- 159 (381)
T COG3391 98 VSVIDTATNTVLGSIPVGL-----------------GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVG- 159 (381)
T ss_pred EEEEcCcccceeeEeeecc-----------------CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecC-
Confidence 9999977766666665442 7999999999999999999 5799999999988776654322
Q ss_pred cccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccC
Q 001380 759 ERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQH 838 (1089)
Q Consensus 759 ~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~ 838 (1089)
..|.+++++++|+.+|+++..+++|..++.++..+.. .... .....+..
T Consensus 160 --------------~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~----------------~~~~~~~~ 208 (381)
T COG3391 160 --------------NTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVG----------------SLVGVGTG 208 (381)
T ss_pred --------------CCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccc----------------cccccCCC
Confidence 1578999999999999999999999999977544432 1100 01223568
Q ss_pred ceEEEEccCCc-EEEEeCCC--CEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCc-EEEEECCCCE
Q 001380 839 PLGVYCAKNGQ-IYVADSYN--HKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGN-LFIADTNNNI 914 (1089)
Q Consensus 839 P~gva~~~~G~-lyVaD~~n--~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~-lyVad~~n~~ 914 (1089)
|.+++++++|+ +||++..+ +++.++|..++.+....... ..+ .|.+++++++|. +||++...+.
T Consensus 209 P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~-----------~~~-~~~~v~~~p~g~~~yv~~~~~~~ 276 (381)
T COG3391 209 PAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPV-----------GSG-APRGVAVDPAGKAAYVANSQGGT 276 (381)
T ss_pred CceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecccc-----------ccC-CCCceeECCCCCEEEEEecCCCe
Confidence 99999999995 99999888 69999999888776653221 145 799999999985 8999999999
Q ss_pred EEEEeCCCC
Q 001380 915 IRYLDLNKE 923 (1089)
Q Consensus 915 I~~~~~~~~ 923 (1089)
+..++....
T Consensus 277 V~vid~~~~ 285 (381)
T COG3391 277 VSVIDGATD 285 (381)
T ss_pred EEEEeCCCC
Confidence 999998876
No 110
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=99.65 E-value=2.1e-15 Score=147.49 Aligned_cols=97 Identities=29% Similarity=0.472 Sum_probs=87.0
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCC--------hHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHc-
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSAD--------RIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKIL- 235 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~--------~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~l- 235 (1089)
.++||+.++|++|+++|++++|+||+. .+.++..++.+++. ++.++.+. ...||++++|+++++++
T Consensus 25 ~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~---~~~~~~~~--~~~KP~~~~~~~~~~~~~ 99 (132)
T TIGR01662 25 ILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEELGVP---IDVLYACP--HCRKPKPGMFLEALKRFN 99 (132)
T ss_pred eeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHCCCC---EEEEEECC--CCCCCChHHHHHHHHHcC
Confidence 578999999999999999999999998 78899999999995 44444444 56799999999999999
Q ss_pred CCCCCcEEEEcC-ChhhHHHHHHcCCeEEEEc
Q 001380 236 NVPTSECIVIED-ALAGVQAAKAAQMRCIAVT 266 (1089)
Q Consensus 236 gv~p~~~v~VGD-~~~Di~aA~~aG~~~i~V~ 266 (1089)
++++++++|||| ..+|+.+|+++|+.+|++.
T Consensus 100 ~~~~~~~v~IGD~~~~Di~~A~~~Gi~~i~~~ 131 (132)
T TIGR01662 100 EIDPEESVYVGDQDLTDLQAAKRAGLAFILVA 131 (132)
T ss_pred CCChhheEEEcCCCcccHHHHHHCCCeEEEee
Confidence 599999999999 6899999999999999985
No 111
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.64 E-value=6.8e-16 Score=141.56 Aligned_cols=91 Identities=33% Similarity=0.553 Sum_probs=79.1
Q ss_pred CCEEEEEEecCCCcchhhhhhhHHHHHHHcC-CCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceee---cCChhHH
Q 001380 453 GKVVVLDFWTYCCINCMHVLPDLEFLEKKYK-DMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVN---DGDMNLW 528 (1089)
Q Consensus 453 gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~-~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---d~~~~l~ 528 (1089)
||+++|+||++||++|++++|.|.+++++|+ +.++.+|+|+. +++.+++++++++++.+|..+. +....+.
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~-----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 75 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSL-----DEDEEEWKKFLKKNNFPWYNVPFDDDNNSELL 75 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE------SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHH
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEe-----CCCHHHHHHHHHhcCCCceEEeeCcchHHHHH
Confidence 7999999999999999999999999999999 56899999986 5778999999999988875543 3356899
Q ss_pred HHhCCCceeEEEEECCCCcE
Q 001380 529 RELGVNSWPTFAVVGPNGKL 548 (1089)
Q Consensus 529 ~~~~v~~~Pt~~lid~~G~i 548 (1089)
+.|+|.++|+++|+|++|+|
T Consensus 76 ~~~~i~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 76 KKYGINGIPTLVLLDPDGKI 95 (95)
T ss_dssp HHTT-TSSSEEEEEETTSBE
T ss_pred HHCCCCcCCEEEEECCCCCC
Confidence 99999999999999999986
No 112
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=99.64 E-value=8.1e-14 Score=153.55 Aligned_cols=241 Identities=19% Similarity=0.271 Sum_probs=168.0
Q ss_pred CCCCCCceEEEeecCCeEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECC
Q 001380 598 SPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTE 677 (1089)
Q Consensus 598 ~~l~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~ 677 (1089)
.......+...++..+.||++|..+++|.++++.......+..++. .+.+..++..|. |++++.
T Consensus 22 ~~~~~gEgP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~--------------~~~~~~~d~~g~-Lv~~~~- 85 (307)
T COG3386 22 KGATLGEGPVWDPDRGALLWVDILGGRIHRLDPETGKKRVFPSPGG--------------FSSGALIDAGGR-LIACEH- 85 (307)
T ss_pred cccccccCccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEECCCC--------------cccceeecCCCe-EEEEcc-
Confidence 3445566777788788899999999999999997444445544421 367888887776 888874
Q ss_pred CCEEEEEECCCCeE-EEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECC-----------CcEEEEEEC
Q 001380 678 NHALREIDFVNDTV-RTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAG-----------QHQIWEHST 745 (1089)
Q Consensus 678 n~~I~~~d~~~g~v-~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~-----------~~~I~~~~~ 745 (1089)
.++.++.+.+.. +.++... ...+++.|+++.++|+| .+||++.+ .+.|+++++
T Consensus 86 --g~~~~~~~~~~~~t~~~~~~------------~~~~~~r~ND~~v~pdG-~~wfgt~~~~~~~~~~~~~~G~lyr~~p 150 (307)
T COG3386 86 --GVRLLDPDTGGKITLLAEPE------------DGLPLNRPNDGVVDPDG-RIWFGDMGYFDLGKSEERPTGSLYRVDP 150 (307)
T ss_pred --ccEEEeccCCceeEEecccc------------CCCCcCCCCceeEcCCC-CEEEeCCCccccCccccCCcceEEEEcC
Confidence 444555454444 6665322 12346799999999998 99999887 246889988
Q ss_pred CCCeEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccC
Q 001380 746 VDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFG 825 (1089)
Q Consensus 746 ~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g 825 (1089)
.++.++.+. ..+..|+|||++|||+.||++|+..++|.+++.+.. .+........+.+.
T Consensus 151 ~g~~~~l~~---------------~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~------~g~~~~~~~~~~~~ 209 (307)
T COG3386 151 DGGVVRLLD---------------DDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPA------TGPIGGRRGFVDFD 209 (307)
T ss_pred CCCEEEeec---------------CcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcc------cCccCCcceEEEcc
Confidence 655555554 236689999999999999999999999999987630 00000000111111
Q ss_pred CCCCccccccccCceEEEEccCCcEEEEeCCC-CEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccC--
Q 001380 826 DRDGMGSEVLLQHPLGVYCAKNGQIYVADSYN-HKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQN-- 902 (1089)
Q Consensus 826 ~~dg~~~~~~l~~P~gva~~~~G~lyVaD~~n-~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~-- 902 (1089)
... ..|.|+++|.+|++|++-..+ .+|.+++|++..+.++.- .-..|+.+|+...
T Consensus 210 ~~~--------G~PDG~~vDadG~lw~~a~~~g~~v~~~~pdG~l~~~i~l--------------P~~~~t~~~FgG~~~ 267 (307)
T COG3386 210 EEP--------GLPDGMAVDADGNLWVAAVWGGGRVVRFNPDGKLLGEIKL--------------PVKRPTNPAFGGPDL 267 (307)
T ss_pred CCC--------CCCCceEEeCCCCEEEecccCCceEEEECCCCcEEEEEEC--------------CCCCCccceEeCCCc
Confidence 112 258999999999999655444 499999999777766653 2255888898753
Q ss_pred CcEEEEECCC
Q 001380 903 GNLFIADTNN 912 (1089)
Q Consensus 903 G~lyVad~~n 912 (1089)
..|||+....
T Consensus 268 ~~L~iTs~~~ 277 (307)
T COG3386 268 NTLYITSARS 277 (307)
T ss_pred CEEEEEecCC
Confidence 3699987655
No 113
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=99.62 E-value=3.7e-16 Score=173.03 Aligned_cols=122 Identities=16% Similarity=0.264 Sum_probs=97.9
Q ss_pred CCccHHHHHHHHHhCCCeEEEEcCCChHhH-HHHHHHCCCCCCCccEEE---EcCCccCCCCCHHHHHHHHHHcCCCCCc
Q 001380 166 GFPGALELINQCKSKGLKVAVASSADRIKV-DANLAAAGLPVSMFDAIV---SADAFENLKPAPDIFLSASKILNVPTSE 241 (1089)
Q Consensus 166 ~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~-~~~l~~~gl~~~~fd~i~---~~~~~~~~KP~~~~~~~~l~~lgv~p~~ 241 (1089)
-++++.++++.|+++|+ ++|+||.+.... ...+...+.. .+|+.+. +.+....+||+|++|..+++++|+++++
T Consensus 144 ~y~~i~~~l~~L~~~g~-~~i~Tn~d~~~~~~~~~~~~~~g-~~~~~i~~~~g~~~~~~gKP~p~~~~~~~~~~~~~~~~ 221 (279)
T TIGR01452 144 SYAKLREACAHLREPGC-LFVATNRDPWHPLSDGSRTPGTG-SLVAAIETASGRQPLVVGKPSPYMFECITENFSIDPAR 221 (279)
T ss_pred CHHHHHHHHHHHhcCCC-EEEEeCCCCCCCCcCCCcccChH-HHHHHHHHHhCCceeccCCCCHHHHHHHHHHhCCChhh
Confidence 37899999999999887 799999766432 1223344553 5666553 3455567899999999999999999999
Q ss_pred EEEEcCCh-hhHHHHHHcCCeEEEEcCCC-CHHHHhh--------cCCcEEecCcccC
Q 001380 242 CIVIEDAL-AGVQAAKAAQMRCIAVTTTL-SEERLKE--------ASPSLIRKEIGSV 289 (1089)
Q Consensus 242 ~v~VGD~~-~Di~aA~~aG~~~i~V~~g~-~~~~l~~--------~~~d~vi~dl~el 289 (1089)
|+||||++ +||++|+++||++++|.+|. ..+++.+ .+||++++++.++
T Consensus 222 ~lmIGD~~~tDI~~A~~aGi~si~V~~G~~~~~~l~~~~~~~~~~~~Pd~~~~~l~~l 279 (279)
T TIGR01452 222 TLMVGDRLETDILFGHRCGMTTVLVLSGVSRLEEAQEYLAAGQHDLVPDYVVESLADL 279 (279)
T ss_pred EEEECCChHHHHHHHHHcCCcEEEECCCCCCHHHHHhhhcccccCCCCCEEecccccC
Confidence 99999996 99999999999999999998 6666653 4799999999775
No 114
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.62 E-value=4.9e-13 Score=152.74 Aligned_cols=262 Identities=15% Similarity=0.174 Sum_probs=174.8
Q ss_pred CCCceEEEeecCCeEEEEeCCCCEEEEEeCC--CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCC
Q 001380 601 KFPGKLAIDILNNRLFISDSNHNRIVVTDLD--GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTEN 678 (1089)
Q Consensus 601 ~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~--g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n 678 (1089)
..|..+++++.+..||++....+.|..++.+ |+.. .+..... ...|.+|+++++|+.+|++....
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~-~~~~~~~------------~~~p~~i~~~~~g~~l~v~~~~~ 101 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALT-FAAESPL------------PGSPTHISTDHQGRFLFSASYNA 101 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceE-EeeeecC------------CCCceEEEECCCCCEEEEEEcCC
Confidence 3577899998777899998878888777654 4432 2221101 12689999999999999999888
Q ss_pred CEEEEEECCC-CeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCC-CeEEEEeCC
Q 001380 679 HALREIDFVN-DTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVD-GVTRAFSGD 756 (1089)
Q Consensus 679 ~~I~~~d~~~-g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~-g~~~~~~g~ 756 (1089)
+.|..++.+. +.+....... .....|++++++|+|+.+|+++.+.+.|+.||... +.+......
T Consensus 102 ~~v~v~~~~~~g~~~~~~~~~--------------~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~ 167 (330)
T PRK11028 102 NCVSVSPLDKDGIPVAPIQII--------------EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPA 167 (330)
T ss_pred CeEEEEEECCCCCCCCceeec--------------cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCC
Confidence 9999998752 3222111100 01246899999999999999999999999999764 332211000
Q ss_pred CccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCC--CCeEEEecCCCCCCCCccccCCCCCccccc
Q 001380 757 GYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKT--GGSRLLAGGDPIFPDNLFKFGDRDGMGSEV 834 (1089)
Q Consensus 757 g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~--~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~ 834 (1089)
.. .. ..-..|++++++++|+++||++..+++|..++.+. +..+.+..-. ..+. ...+
T Consensus 168 ~~-~~--------~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~-~~p~------~~~~----- 226 (330)
T PRK11028 168 EV-TT--------VEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLD-MMPA------DFSD----- 226 (330)
T ss_pred ce-ec--------CCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEe-cCCC------cCCC-----
Confidence 00 00 00135899999999999999999999999998863 3332221100 0000 0001
Q ss_pred cccCceEEEEccCCc-EEEEeCCCCEEEEEeC--CCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCC-cEEEEEC
Q 001380 835 LLQHPLGVYCAKNGQ-IYVADSYNHKIKKLDP--ASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNG-NLFIADT 910 (1089)
Q Consensus 835 ~l~~P~gva~~~~G~-lyVaD~~n~~I~~~d~--~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G-~lyVad~ 910 (1089)
-.+|.+++++|+|+ +||++...+.|.+|+. +++..+.+. .-.. -..|.+++++++| .||+++.
T Consensus 227 -~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~-~~~~-----------~~~p~~~~~~~dg~~l~va~~ 293 (330)
T PRK11028 227 -TRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEG-HQPT-----------ETQPRGFNIDHSGKYLIAAGQ 293 (330)
T ss_pred -CccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeE-EEec-----------cccCCceEECCCCCEEEEEEc
Confidence 12577899999985 9999988899988865 333333222 1111 1359999999998 4999999
Q ss_pred CCCEEEEEeCCCC
Q 001380 911 NNNIIRYLDLNKE 923 (1089)
Q Consensus 911 ~n~~I~~~~~~~~ 923 (1089)
.++.|.+|+++..
T Consensus 294 ~~~~v~v~~~~~~ 306 (330)
T PRK11028 294 KSHHISVYEIDGE 306 (330)
T ss_pred cCCcEEEEEEcCC
Confidence 8999999987643
No 115
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=99.61 E-value=5.4e-15 Score=148.25 Aligned_cols=102 Identities=19% Similarity=0.189 Sum_probs=92.3
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCC---------------hHhHHHHHHHCCCCCCCccEEE-E----cCCccCCCCC
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSAD---------------RIKVDANLAAAGLPVSMFDAIV-S----ADAFENLKPA 224 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~---------------~~~~~~~l~~~gl~~~~fd~i~-~----~~~~~~~KP~ 224 (1089)
.++||+.++|++|+++|++++|+||.. ...+...++.+|+. |+.++ + +++....||+
T Consensus 29 ~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~~~gl~---fd~ii~~~~~~~~~~~~~KP~ 105 (161)
T TIGR01261 29 RFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFRSQGII---FDDVLICPHFPDDNCDCRKPK 105 (161)
T ss_pred eECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHCCCc---eeEEEECCCCCCCCCCCCCCC
Confidence 689999999999999999999999963 45778889999995 87664 4 4778889999
Q ss_pred HHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCC
Q 001380 225 PDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTL 269 (1089)
Q Consensus 225 ~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~ 269 (1089)
+++|..+++++++++++++||||+.+|+++|+++||.+++|.++.
T Consensus 106 ~~~~~~~~~~~~~~~~e~l~IGD~~~Di~~A~~aGi~~i~~~~~~ 150 (161)
T TIGR01261 106 IKLLEPYLKKNLIDKARSYVIGDRETDMQLAENLGIRGIQYDEEE 150 (161)
T ss_pred HHHHHHHHHHcCCCHHHeEEEeCCHHHHHHHHHCCCeEEEEChhh
Confidence 999999999999999999999999999999999999999998864
No 116
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=99.60 E-value=4.4e-15 Score=158.61 Aligned_cols=189 Identities=16% Similarity=0.149 Sum_probs=124.7
Q ss_pred ceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhhcC---CCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH
Q 001380 79 VSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMG---TGEANFLGGVASVKGVKGFDSEAAKKRFFEIYL 155 (1089)
Q Consensus 79 ~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (1089)
-++|+||+||||++..... .++++++. ...+++.+... .+..+..+....... . . ..+++.+.+.
T Consensus 3 ~~~vifDfDgTi~~~d~~~-----~~~~~~~~-~~~~~i~~~~~~g~~~~~~~~~~~~~~l~--~-~---~~~~~~~~~~ 70 (219)
T PRK09552 3 SIQIFCDFDGTITNNDNII-----AIMKKFAP-PEWEELKDDILSQELSIQEGVGQMFQLLP--S-N---LKEEIIQFLL 70 (219)
T ss_pred CcEEEEcCCCCCCcchhhH-----HHHHHhCH-HHHHHHHHHHHhCCcCHHHHHHHHHHhCC--C-C---chHHHHHHHH
Confidence 3589999999999988643 24444442 22344433221 123334444443322 1 1 1122223222
Q ss_pred HHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCC-Cc--cEEEEcCCccCCCCCHHH-----
Q 001380 156 DKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVS-MF--DAIVSADAFENLKPAPDI----- 227 (1089)
Q Consensus 156 ~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~-~f--d~i~~~~~~~~~KP~~~~----- 227 (1089)
+ . ..++||+.++|+.|+++|++++|+|++....++.+++++ +... ++ +..+.++.....||.|..
T Consensus 71 ~----~--~~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~-~~~~~i~~n~~~~~~~~~~~~kp~p~~~~~~~ 143 (219)
T PRK09552 71 E----T--AEIREGFHEFVQFVKENNIPFYVVSGGMDFFVYPLLQGL-IPKEQIYCNGSDFSGEYITITWPHPCDEHCQN 143 (219)
T ss_pred h----C--CCcCcCHHHHHHHHHHcCCeEEEECCCcHHHHHHHHHHh-CCcCcEEEeEEEecCCeeEEeccCCccccccc
Confidence 1 1 278999999999999999999999999999999999998 6411 22 445566666677887764
Q ss_pred -----HHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHH-hhcCCcEEecCcccC
Q 001380 228 -----FLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERL-KEASPSLIRKEIGSV 289 (1089)
Q Consensus 228 -----~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l-~~~~~d~vi~dl~el 289 (1089)
...++++++..+++|+||||+.+|+.+|++||+.++ .+.-.+.. ...-+.+.+++|.|+
T Consensus 144 ~~~~~K~~~l~~~~~~~~~~i~iGDs~~Di~aa~~Ag~~~a---~~~l~~~~~~~~~~~~~~~~f~ei 208 (219)
T PRK09552 144 HCGCCKPSLIRKLSDTNDFHIVIGDSITDLEAAKQADKVFA---RDFLITKCEELGIPYTPFETFHDV 208 (219)
T ss_pred cCCCchHHHHHHhccCCCCEEEEeCCHHHHHHHHHCCccee---HHHHHHHHHHcCCCccccCCHHHH
Confidence 357889999999999999999999999999998333 22111111 223466777888777
No 117
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=99.59 E-value=7.1e-15 Score=148.51 Aligned_cols=96 Identities=18% Similarity=0.263 Sum_probs=85.4
Q ss_pred CCccHHHHHHHHHhCCCeEEEEcCCChH------------hHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHH
Q 001380 166 GFPGALELINQCKSKGLKVAVASSADRI------------KVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASK 233 (1089)
Q Consensus 166 ~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~------------~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~ 233 (1089)
++||+.++|+.|+++|++++|+||.... .++.+++++|+. ++.++++++....||+|++|+++++
T Consensus 43 ~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~~~gl~---~~~ii~~~~~~~~KP~p~~~~~~~~ 119 (166)
T TIGR01664 43 LYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFKNKIEAFLEKLKVP---IQVLAATHAGLYRKPMTGMWEYLQS 119 (166)
T ss_pred ecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHHHHHHHHHHHcCCC---EEEEEecCCCCCCCCccHHHHHHHH
Confidence 6899999999999999999999997653 567889999995 3677777766678999999999999
Q ss_pred HcC--CCCCcEEEEcCCh--------hhHHHHHHcCCeEEE
Q 001380 234 ILN--VPTSECIVIEDAL--------AGVQAAKAAQMRCIA 264 (1089)
Q Consensus 234 ~lg--v~p~~~v~VGD~~--------~Di~aA~~aG~~~i~ 264 (1089)
++| +++++++||||+. +|+++|+++|+++++
T Consensus 120 ~~~~~~~~~~~v~VGD~~~~~~~~~~~Di~aA~~aGi~~~~ 160 (166)
T TIGR01664 120 QYNSPIKMTRSFYVGDAAGRKLDFSDADIKFAKNLGLEFKY 160 (166)
T ss_pred HcCCCCCchhcEEEECCCCCCCCCchhHHHHHHHCCCCcCC
Confidence 999 9999999999996 699999999998865
No 118
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.58 E-value=6.6e-13 Score=152.01 Aligned_cols=282 Identities=20% Similarity=0.285 Sum_probs=180.4
Q ss_pred CCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHHHhcccccccCCC-----CCcccccCCCCCCCCCCCCCCceEE
Q 001380 533 VNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALLFYGKKKLLDNTP-----LPLSLEKDNDPRLFTSPLKFPGKLA 607 (1089)
Q Consensus 533 v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~l~~P~~va 607 (1089)
...-|+++.++++++.++...... ...|.+.... ..+.... ...+.-..|..++
T Consensus 35 ~~~~Ps~l~~~~~~~~LY~~~e~~----------------~~~g~v~~~~i~~~~g~L~~~~-----~~~~~g~~p~~i~ 93 (345)
T PF10282_consen 35 EGENPSWLAVSPDGRRLYVVNEGS----------------GDSGGVSSYRIDPDTGTLTLLN-----SVPSGGSSPCHIA 93 (345)
T ss_dssp ESSSECCEEE-TTSSEEEEEETTS----------------STTTEEEEEEEETTTTEEEEEE-----EEEESSSCEEEEE
T ss_pred CCCCCceEEEEeCCCEEEEEEccc----------------cCCCCEEEEEECCCcceeEEee-----eeccCCCCcEEEE
Confidence 456699999999999998854321 0111111000 0010000 1122456789999
Q ss_pred EeecCCeEEEEeCCCCEEEEEeCC--CCEEEEEecCCCCCCCCCCC-CccccCCcceeEEeeCCCEEEEEECCCCEEEEE
Q 001380 608 IDILNNRLFISDSNHNRIVVTDLD--GNFIVQIGSSGEEGLRDGSF-DDATFNRPQGLAYNAKKNLLYVADTENHALREI 684 (1089)
Q Consensus 608 vd~~~g~L~vsd~~~~~I~~~~~~--g~~~~~i~~~g~~g~~dG~~-~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~~ 684 (1089)
+++.+..||+++.+.+.|.+++.+ |............|. |+- ....-.+|+.+.++|+|+++||+|.+..+|+.+
T Consensus 94 ~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~--g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~ 171 (345)
T PF10282_consen 94 VDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGS--GPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVY 171 (345)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEE--ESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEE
T ss_pred EecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCC--CCcccccccccceeEEECCCCCEEEEEecCCCEEEEE
Confidence 999889999999999998877654 655443211000000 100 112346899999999999999999999999999
Q ss_pred ECCCCe--EEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECC--CCeEEEEeCCCccc
Q 001380 685 DFVNDT--VRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTV--DGVTRAFSGDGYER 760 (1089)
Q Consensus 685 d~~~g~--v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~--~g~~~~~~g~g~~~ 760 (1089)
+.+... +........ ..-+.|+.++|+|+++.+||++...+.|..|+.. ++..+.........
T Consensus 172 ~~~~~~~~l~~~~~~~~-------------~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~ 238 (345)
T PF10282_consen 172 DIDDDTGKLTPVDSIKV-------------PPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLP 238 (345)
T ss_dssp EE-TTS-TEEEEEEEEC-------------STTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCE
T ss_pred EEeCCCceEEEeecccc-------------ccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecc
Confidence 887644 444221100 0114799999999999999999999998887766 66554443211100
Q ss_pred cCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcC--CCCeEEEecCCCCCCCCccccCCCCCccccccccC
Q 001380 761 NLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLK--TGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQH 838 (1089)
Q Consensus 761 ~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~--~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~ 838 (1089)
. + ...-..|++|++++||++|||++.+.++|..|+.+ ++..+.+.. ... .-.+
T Consensus 239 ~--~----~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~---------~~~----------~G~~ 293 (345)
T PF10282_consen 239 E--G----FTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQT---------VPT----------GGKF 293 (345)
T ss_dssp T--T----SCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEE---------EEE----------SSSS
T ss_pred c--c----ccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEE---------EeC----------CCCC
Confidence 0 0 01123799999999999999999999999999873 344443311 000 1246
Q ss_pred ceEEEEccCCc-EEEEeCCCCEEEEE--eCCCCeEEEEec
Q 001380 839 PLGVYCAKNGQ-IYVADSYNHKIKKL--DPASNRVSTLAG 875 (1089)
Q Consensus 839 P~gva~~~~G~-lyVaD~~n~~I~~~--d~~~~~v~t~~g 875 (1089)
|.+++++++|+ |||++...+.|..| |+++|.+.....
T Consensus 294 Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~ 333 (345)
T PF10282_consen 294 PRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGS 333 (345)
T ss_dssp EEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEE
T ss_pred ccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecc
Confidence 99999999995 99999999988865 678898887763
No 119
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=99.58 E-value=1.9e-15 Score=164.77 Aligned_cols=123 Identities=18% Similarity=0.157 Sum_probs=103.9
Q ss_pred CCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCcc---CCCCCHHHHHHHHHHcCCCCCcE
Q 001380 166 GFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFE---NLKPAPDIFLSASKILNVPTSEC 242 (1089)
Q Consensus 166 ~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~---~~KP~~~~~~~~l~~lgv~p~~~ 242 (1089)
.++++.+.++.|++.+++++|+||.++......+..+|+. .+|+.+.++.... .+||+|.+|+.+++++|++|+++
T Consensus 121 ~y~~l~~a~~~L~~~~~~~~iatn~~~~~~~~~~~~~g~g-~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~~ 199 (257)
T TIGR01458 121 SYQILNQAFRLLLDGAKPLLIAIGKGRYYKRKDGLALDVG-PFVTALEYATDTKATVVGKPSKTFFLEALRATGCEPEEA 199 (257)
T ss_pred CHHHHHHHHHHHHcCCCCEEEEeCCCCCCcCCCCCCCCch-HHHHHHHHHhCCCceeecCCCHHHHHHHHHHhCCChhhE
Confidence 3678899999999999999999998877766666777885 8888776654433 37999999999999999999999
Q ss_pred EEEcCCh-hhHHHHHHcCCeEEEEcCCC-CHH--HHhhcCCcEEecCcccC
Q 001380 243 IVIEDAL-AGVQAAKAAQMRCIAVTTTL-SEE--RLKEASPSLIRKEIGSV 289 (1089)
Q Consensus 243 v~VGD~~-~Di~aA~~aG~~~i~V~~g~-~~~--~l~~~~~d~vi~dl~el 289 (1089)
+||||+. +||.+|+++||++++|.+|. ..+ +.....|+++++++.++
T Consensus 200 ~~vGD~~~~Di~~a~~~G~~~i~v~~G~~~~~~~~~~~~~pd~~~~sl~el 250 (257)
T TIGR01458 200 VMIGDDCRDDVGGAQDCGMRGIQVRTGKYRPSDEEKINVPPDLTCDSLPHA 250 (257)
T ss_pred EEECCCcHHHHHHHHHcCCeEEEECCCCCChHHhcccCCCCCEEECCHHHH
Confidence 9999997 99999999999999999986 333 23456899999999888
No 120
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.57 E-value=1.9e-12 Score=147.98 Aligned_cols=249 Identities=14% Similarity=0.178 Sum_probs=166.3
Q ss_pred CeEEEEeCCCCEEEEEeCC--CC--EEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEEEEECC-
Q 001380 613 NRLFISDSNHNRIVVTDLD--GN--FIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREIDFV- 687 (1089)
Q Consensus 613 g~L~vsd~~~~~I~~~~~~--g~--~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~~d~~- 687 (1089)
.++|+++...+.|..++.+ |+ .+.++... ..|..++++|+|++||++....+.|..|+.+
T Consensus 2 ~~~y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~---------------~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~ 66 (330)
T PRK11028 2 QIVYIASPESQQIHVWNLNHEGALTLLQVVDVP---------------GQVQPMVISPDKRHLYVGVRPEFRVLSYRIAD 66 (330)
T ss_pred eEEEEEcCCCCCEEEEEECCCCceeeeeEEecC---------------CCCccEEECCCCCEEEEEECCCCcEEEEEECC
Confidence 3589998888889998874 44 23333221 2688999999999999998878888777765
Q ss_pred CCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECC-CCeEEEEeCCCccccCCCCC
Q 001380 688 NDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTV-DGVTRAFSGDGYERNLNGSS 766 (1089)
Q Consensus 688 ~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~-~g~~~~~~g~g~~~~~~g~~ 766 (1089)
++.++.+.. .. ....|.+|+++|+++.+|++..+.+.|..|+.+ ++.+......
T Consensus 67 ~g~l~~~~~-~~--------------~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~---------- 121 (330)
T PRK11028 67 DGALTFAAE-SP--------------LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQI---------- 121 (330)
T ss_pred CCceEEeee-ec--------------CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceee----------
Confidence 455543321 10 012689999999999999999888888888764 2322111100
Q ss_pred CCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEcc
Q 001380 767 SLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAK 846 (1089)
Q Consensus 767 ~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~ 846 (1089)
......|++++++|+|+.+||++.+.++|..++.++.+....... ..... . .-.+|.++++++
T Consensus 122 --~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~------~~~~~--~-------~g~~p~~~~~~p 184 (330)
T PRK11028 122 --IEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEP------AEVTT--V-------EGAGPRHMVFHP 184 (330)
T ss_pred --ccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCC------Cceec--C-------CCCCCceEEECC
Confidence 011246899999999999999999999999999875321100000 00000 0 013689999999
Q ss_pred CC-cEEEEeCCCCEEEEEeCC--CCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCc-EEEEECCCCEEEEEeCCC
Q 001380 847 NG-QIYVADSYNHKIKKLDPA--SNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGN-LFIADTNNNIIRYLDLNK 922 (1089)
Q Consensus 847 ~G-~lyVaD~~n~~I~~~d~~--~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~-lyVad~~n~~I~~~~~~~ 922 (1089)
+| .+||++...+.|..++.+ ++.+..+...... ..+ ...-..|.+++++++|+ +||++.+.+.|.+|+.+.
T Consensus 185 dg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~--p~~---~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~ 259 (330)
T PRK11028 185 NQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMM--PAD---FSDTRWAADIHITPDGRHLYACDRTASLISVFSVSE 259 (330)
T ss_pred CCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecC--CCc---CCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeC
Confidence 98 599999989999988765 4444333211100 000 00113466799999886 999999999999998865
Q ss_pred C
Q 001380 923 E 923 (1089)
Q Consensus 923 ~ 923 (1089)
.
T Consensus 260 ~ 260 (330)
T PRK11028 260 D 260 (330)
T ss_pred C
Confidence 4
No 121
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=99.55 E-value=7.2e-14 Score=147.92 Aligned_cols=186 Identities=15% Similarity=0.130 Sum_probs=116.7
Q ss_pred ceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHh
Q 001380 79 VSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIYLDKY 158 (1089)
Q Consensus 79 ~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (1089)
+++|+||+||||++ +.|..+++++|++... .+... ......................+.. .+. .+
T Consensus 1 ~~~v~FD~DGTL~~------~~~~~~~~~~g~~~~~-~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~i----~~~-~~-- 65 (205)
T PRK13582 1 MEIVCLDLEGVLVP------EIWIAFAEKTGIPELR-ATTRD-IPDYDVLMKQRLDILDEHGLGLADI----QEV-IA-- 65 (205)
T ss_pred CeEEEEeCCCCChh------hHHHHHHHHcCChHHH-HHhcC-CCCHHHHHHHHHHHHHHcCCCHHHH----HHH-HH--
Confidence 47899999999993 2566677788874321 11100 0111112211111111001111111 111 11
Q ss_pred cCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCc----cCCCCCHHHHHHHHHH
Q 001380 159 AKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAF----ENLKPAPDIFLSASKI 234 (1089)
Q Consensus 159 ~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~----~~~KP~~~~~~~~l~~ 234 (1089)
. ..++||+.++|..|+++ ++++|+||+....++..++++|+. .+|+..+..++. +..++.|.....++++
T Consensus 66 -~---~~~~pg~~e~L~~L~~~-~~~~IvS~~~~~~~~~~l~~~gl~-~~f~~~~~~~~~~~i~~~~~~~p~~k~~~l~~ 139 (205)
T PRK13582 66 -T---LDPLPGAVEFLDWLRER-FQVVILSDTFYEFAGPLMRQLGWP-TLFCHSLEVDEDGMITGYDLRQPDGKRQAVKA 139 (205)
T ss_pred -h---CCCCCCHHHHHHHHHhc-CCEEEEeCCcHHHHHHHHHHcCCc-hhhcceEEECCCCeEECccccccchHHHHHHH
Confidence 1 26899999999999999 999999999999999999999996 777654433211 1123334445666777
Q ss_pred cCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcE-EecCcccC
Q 001380 235 LNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSL-IRKEIGSV 289 (1089)
Q Consensus 235 lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~-vi~dl~el 289 (1089)
++..+++|+||||+.+|+.+++++|+.. .+.. .. ......+++ ++.++.++
T Consensus 140 ~~~~~~~~v~iGDs~~D~~~~~aa~~~v-~~~~--~~-~~~~~~~~~~~~~~~~el 191 (205)
T PRK13582 140 LKSLGYRVIAAGDSYNDTTMLGEADAGI-LFRP--PA-NVIAEFPQFPAVHTYDEL 191 (205)
T ss_pred HHHhCCeEEEEeCCHHHHHHHHhCCCCE-EECC--CH-HHHHhCCcccccCCHHHH
Confidence 7777899999999999999999999743 3332 32 233334555 88888887
No 122
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.55 E-value=1.7e-11 Score=131.11 Aligned_cols=283 Identities=15% Similarity=0.217 Sum_probs=196.4
Q ss_pred CCCCCCceEEEeecCCeEEEEeCC--CCEEEEEeCCC--CEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEE
Q 001380 598 SPLKFPGKLAIDILNNRLFISDSN--HNRIVVTDLDG--NFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYV 673 (1089)
Q Consensus 598 ~~l~~P~~vavd~~~g~L~vsd~~--~~~I~~~~~~g--~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyV 673 (1089)
..+..|.-|++++.+.+||+.... .+.|..+..|. ..+..+...... -+.|.-+++|++|.+||+
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~-----------g~~p~yvsvd~~g~~vf~ 105 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLP-----------GSPPCYVSVDEDGRFVFV 105 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccC-----------CCCCeEEEECCCCCEEEE
Confidence 445788999999977799988765 66776654442 233343332121 135699999999999999
Q ss_pred EECCCCEEEEEECCC-CeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEE
Q 001380 674 ADTENHALREIDFVN-DTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRA 752 (1089)
Q Consensus 674 aD~~n~~I~~~d~~~-g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~ 752 (1089)
|....+.|.++-.+. |.+....+.-. ..+.++-..|.-..++-.-++|+++.|+++|.|..+|..|+.+.|.+..
T Consensus 106 AnY~~g~v~v~p~~~dG~l~~~v~~~~----h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~ 181 (346)
T COG2706 106 ANYHSGSVSVYPLQADGSLQPVVQVVK----HTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTP 181 (346)
T ss_pred EEccCceEEEEEcccCCccccceeeee----cCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcccc
Confidence 999999998887743 55544422111 0111222344445678889999999999999999999999999887665
Q ss_pred EeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCC--CCeEEEecCCCCCCCCccccCCCCCc
Q 001380 753 FSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKT--GGSRLLAGGDPIFPDNLFKFGDRDGM 830 (1089)
Q Consensus 753 ~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~--~~~~~~~g~~~~~~~~l~~~g~~dg~ 830 (1089)
....-. ..-+.|..|+++|+++..|+...-+++|.++..++ +....+-.-..+ |. +|- |
T Consensus 182 ~~~~~v-----------~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tl-P~---dF~---g- 242 (346)
T COG2706 182 ADPAEV-----------KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTL-PE---DFT---G- 242 (346)
T ss_pred cccccc-----------CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccC-cc---ccC---C-
Confidence 442110 11246999999999999999999999998887665 444433221111 11 111 1
Q ss_pred cccccccCceEEEEccCCc-EEEEeCCCCEEE--EEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCc-EE
Q 001380 831 GSEVLLQHPLGVYCAKNGQ-IYVADSYNHKIK--KLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGN-LF 906 (1089)
Q Consensus 831 ~~~~~l~~P~gva~~~~G~-lyVaD~~n~~I~--~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~-ly 906 (1089)
-.+...|.+++||+ ||+++.+.+.|. ++|++++.+..+.-.... -..|.+..+++.|+ |+
T Consensus 243 -----~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~te-----------g~~PR~F~i~~~g~~Li 306 (346)
T COG2706 243 -----TNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTE-----------GQFPRDFNINPSGRFLI 306 (346)
T ss_pred -----CCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccC-----------CcCCccceeCCCCCEEE
Confidence 23456788899995 999999988775 568899988887654322 35699999999886 78
Q ss_pred EEECCCCEEEEEeCCCCCceEEEE
Q 001380 907 IADTNNNIIRYLDLNKEEPELQTL 930 (1089)
Q Consensus 907 Vad~~n~~I~~~~~~~~~~~~~~l 930 (1089)
++.-..+.|.+|..+..+..+..+
T Consensus 307 aa~q~sd~i~vf~~d~~TG~L~~~ 330 (346)
T COG2706 307 AANQKSDNITVFERDKETGRLTLL 330 (346)
T ss_pred EEccCCCcEEEEEEcCCCceEEec
Confidence 888888889998888775444433
No 123
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.55 E-value=2.6e-14 Score=141.11 Aligned_cols=99 Identities=14% Similarity=0.183 Sum_probs=75.2
Q ss_pred CCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHH-HHh
Q 001380 453 GKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLW-REL 531 (1089)
Q Consensus 453 gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~-~~~ 531 (1089)
+++.||+|||+||++|++|+|.|++++++| ++.|++|+.+. .. .+ .||+..|.+.... +.|
T Consensus 50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~---~~~Vi~Vs~d~-----~~------~~----~fp~~~~~~~~~~~~~~ 111 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQF---GLPVYAFSLDG-----QG------LT----GFPDPLPATPEVMQTFF 111 (153)
T ss_pred CCCEEEEEECCCChhHHHHHHHHHHHHHHc---CCcEEEEEeCC-----Cc------cc----ccccccCCchHHHHHHh
Confidence 455699999999999999999999999998 47788887531 11 01 3555554444443 455
Q ss_pred ---CCCceeEEEEECCCCcEEE-EecCCCchhhHHHHHHHHH
Q 001380 532 ---GVNSWPTFAVVGPNGKLLA-QLAGEGHRKDLDDLVEAAL 569 (1089)
Q Consensus 532 ---~v~~~Pt~~lid~~G~i~~-~~~G~~~~~~l~~~l~~~l 569 (1089)
++.++|++|+||++|+++. ++.|..+.+++++.|+++|
T Consensus 112 ~~~~v~~iPTt~LID~~G~~i~~~~~G~~s~~~l~~~I~~ll 153 (153)
T TIGR02738 112 PNPRPVVTPATFLVNVNTRKAYPVLQGAVDEAELANRMDEIL 153 (153)
T ss_pred ccCCCCCCCeEEEEeCCCCEEEEEeecccCHHHHHHHHHHhC
Confidence 8899999999999988644 6899999998888877653
No 124
>PRK10444 UMP phosphatase; Provisional
Probab=99.54 E-value=1.9e-14 Score=155.26 Aligned_cols=205 Identities=19% Similarity=0.226 Sum_probs=122.5
Q ss_pred ceEEEEecCCcccCCchHHHHHHHH--HHHHcCCCCCHHhHhhhcCCCHHHHHHHHHhhcCCCCCCHHHH--HHHHHHHH
Q 001380 79 VSAVLFDMDGVLCNSEEPSRRAAVD--VFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVKGFDSEAA--KKRFFEIY 154 (1089)
Q Consensus 79 ~k~ViFD~DGTL~d~~~~~~~a~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 154 (1089)
|++|+||+||||+++...+..+.+. .+++.|... -.+++....+...+.+.+.. .|+.. ..++. .......|
T Consensus 1 ~~~v~~DlDGtL~~~~~~~p~a~~~l~~L~~~g~~~--~~~Tn~~~~~~~~~~~~l~~-~G~~~-~~~~i~ts~~~~~~~ 76 (248)
T PRK10444 1 IKNVICDIDGVLMHDNVAVPGAAEFLHRILDKGLPL--VLLTNYPSQTGQDLANRFAT-AGVDV-PDSVFYTSAMATADF 76 (248)
T ss_pred CcEEEEeCCCceEeCCeeCccHHHHHHHHHHCCCeE--EEEeCCCCCCHHHHHHHHHH-cCCCC-CHhhEecHHHHHHHH
Confidence 5789999999999987655544432 234444432 23344444455555555543 34422 22211 11222233
Q ss_pred HHHhcCCCCCCCCccHHHHHHHHHhCCCeEE------EEcCCCh----HhHHHHHH--HCCCC-----------------
Q 001380 155 LDKYAKPNSGIGFPGALELINQCKSKGLKVA------VASSADR----IKVDANLA--AAGLP----------------- 205 (1089)
Q Consensus 155 ~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~va------IvSn~~~----~~~~~~l~--~~gl~----------------- 205 (1089)
....... ....-|...+.+.|++.|+.+. |+-+.+. +.+..... +-|..
T Consensus 77 L~~~~~~--~v~~~g~~~l~~~l~~~g~~~~~~~~~~Vvvg~~~~~~~~~l~~a~~~l~~g~~~i~~n~D~~~~g~~~~~ 154 (248)
T PRK10444 77 LRRQEGK--KAYVIGEGALIHELYKAGFTITDINPDFVIVGETRSYNWDMMHKAAYFVANGARFIATNPDTHGRGFYPAC 154 (248)
T ss_pred HHhCCCC--EEEEEcCHHHHHHHHHCcCEecCCCCCEEEEeCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCcCcH
Confidence 3322111 1334566667777776666531 2211111 11111111 11211
Q ss_pred ---CCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCcEEEEcCCh-hhHHHHHHcCCeEEEEcCCC-CHHHHhh--cC
Q 001380 206 ---VSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDAL-AGVQAAKAAQMRCIAVTTTL-SEERLKE--AS 278 (1089)
Q Consensus 206 ---~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~-~Di~aA~~aG~~~i~V~~g~-~~~~l~~--~~ 278 (1089)
...++.+.+.+....+||+|++|+.+++++++++++|+||||++ +||++|+++|+++++|.+|. ..+++.+ ..
T Consensus 155 G~~~~~l~~~~g~~~~~~gKP~~~~~~~~~~~~~~~~~~~v~IGD~~~tDi~~A~~~G~~~vlV~~G~~~~~~l~~~~~~ 234 (248)
T PRK10444 155 GALCAGIEKISGRKPFYVGKPSPWIIRAALNKMQAHSEETVIVGDNLRTDILAGFQAGLETILVLSGVSTLDDIDSMPFR 234 (248)
T ss_pred HHHHHHHHHHhCCCccccCCCCHHHHHHHHHHcCCCcccEEEECCCcHHHHHHHHHcCCCEEEECCCCCCHHHHhcCCCC
Confidence 00011223334445689999999999999999999999999998 99999999999999999998 6666653 68
Q ss_pred CcEEecCcccC
Q 001380 279 PSLIRKEIGSV 289 (1089)
Q Consensus 279 ~d~vi~dl~el 289 (1089)
|+++++++.++
T Consensus 235 pd~~~~sl~el 245 (248)
T PRK10444 235 PSWIYPSVADI 245 (248)
T ss_pred CCEEECCHHHh
Confidence 99999999887
No 125
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.53 E-value=5.5e-14 Score=138.23 Aligned_cols=106 Identities=20% Similarity=0.290 Sum_probs=84.9
Q ss_pred CCCCceeecc-cccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCcc
Q 001380 439 WLNTAPLQFR-RDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISH 517 (1089)
Q Consensus 439 ~~~g~~~~l~-~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (1089)
+++.+...+. ...+||++||+||++||++|+.++|.|.+++++|++. +.++.|.++ .
T Consensus 5 ~~~~~~~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~-~~~v~v~vd-----~---------------- 62 (142)
T cd02950 5 QLAASSTPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQ-VNFVMLNVD-----N---------------- 62 (142)
T ss_pred HHhhccCCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccC-eeEEEEEcC-----C----------------
Confidence 3444444442 2247899999999999999999999999999999764 777777541 1
Q ss_pred ceeecCChhHHHHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHH
Q 001380 518 PVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALL 570 (1089)
Q Consensus 518 ~v~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~ 570 (1089)
+....+++.|+|.++|+++++|++|+++.++.|....+.+.+.|+.+++
T Consensus 63 ----~~~~~~~~~~~V~~iPt~v~~~~~G~~v~~~~G~~~~~~l~~~l~~l~~ 111 (142)
T cd02950 63 ----PKWLPEIDRYRVDGIPHFVFLDREGNEEGQSIGLQPKQVLAQNLDALVA 111 (142)
T ss_pred ----cccHHHHHHcCCCCCCEEEEECCCCCEEEEEeCCCCHHHHHHHHHHHHc
Confidence 0113577899999999999999999999999999888889888888775
No 126
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=99.52 E-value=3.2e-12 Score=130.81 Aligned_cols=283 Identities=15% Similarity=0.204 Sum_probs=199.5
Q ss_pred eeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHHHhcccccccCCCCCcccccCCCCCCCCCCCCCCceEEEeecCCeE
Q 001380 536 WPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALLFYGKKKLLDNTPLPLSLEKDNDPRLFTSPLKFPGKLAIDILNNRL 615 (1089)
Q Consensus 536 ~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~P~~vavd~~~g~L 615 (1089)
-|..+-.+++|.+-+.-.|... .|.|+...+.... .....-..|.+|.+++ +|..
T Consensus 63 ap~dvapapdG~VWft~qg~ga-----------------iGhLdP~tGev~~-------ypLg~Ga~Phgiv~gp-dg~~ 117 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGA-----------------IGHLDPATGEVET-------YPLGSGASPHGIVVGP-DGSA 117 (353)
T ss_pred CccccccCCCCceEEecCcccc-----------------ceecCCCCCceEE-------EecCCCCCCceEEECC-CCCe
Confidence 4667777899988876544321 2333333322221 1123346899999998 8999
Q ss_pred EEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEEEEECCCCeEEEEe
Q 001380 616 FISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLA 695 (1089)
Q Consensus 616 ~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~v~~~a 695 (1089)
||+|+++ .|.++++..--++++.-+.+.+ -.+-.-..+|+.|+ ||++.. ++.--++|+..+.++++.
T Consensus 118 Witd~~~-aI~R~dpkt~evt~f~lp~~~a----------~~nlet~vfD~~G~-lWFt~q-~G~yGrLdPa~~~i~vfp 184 (353)
T COG4257 118 WITDTGL-AIGRLDPKTLEVTRFPLPLEHA----------DANLETAVFDPWGN-LWFTGQ-IGAYGRLDPARNVISVFP 184 (353)
T ss_pred eEecCcc-eeEEecCcccceEEeecccccC----------CCcccceeeCCCcc-EEEeec-cccceecCcccCceeeec
Confidence 9999987 8999998655555555542221 12345678999999 788764 444458999999999886
Q ss_pred cCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCccccCCCCCCCCccccCC
Q 001380 696 GNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQP 775 (1089)
Q Consensus 696 g~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P 775 (1089)
.. +| ..|+|||+.|+| .+|++....+.|.++|+.++...++.-- +..-+.-
T Consensus 185 aP--qG--------------~gpyGi~atpdG-svwyaslagnaiaridp~~~~aev~p~P------------~~~~~gs 235 (353)
T COG4257 185 AP--QG--------------GGPYGICATPDG-SVWYASLAGNAIARIDPFAGHAEVVPQP------------NALKAGS 235 (353)
T ss_pred cC--CC--------------CCCcceEECCCC-cEEEEeccccceEEcccccCCcceecCC------------Ccccccc
Confidence 32 22 269999999998 9999998889999999887755555311 1112234
Q ss_pred ceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccCCcEEEEeC
Q 001380 776 SGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADS 855 (1089)
Q Consensus 776 ~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~lyVaD~ 855 (1089)
..|-.|+.| ++|+++++++++.+|++.+....... .. + . -.+|..+-+|..|.+|.+|.
T Consensus 236 Rriwsdpig-~~wittwg~g~l~rfdPs~~sW~eyp------------LP---g--s---~arpys~rVD~~grVW~sea 294 (353)
T COG4257 236 RRIWSDPIG-RAWITTWGTGSLHRFDPSVTSWIEYP------------LP---G--S---KARPYSMRVDRHGRVWLSEA 294 (353)
T ss_pred cccccCccC-cEEEeccCCceeeEeCcccccceeee------------CC---C--C---CCCcceeeeccCCcEEeecc
Confidence 567788988 99999999999999999865433210 00 0 0 13689999999999999999
Q ss_pred CCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEcc-CCcEEEEECCCCEEEEEeC
Q 001380 856 YNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQ-NGNLFIADTNNNIIRYLDL 920 (1089)
Q Consensus 856 ~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~-~G~lyVad~~n~~I~~~~~ 920 (1089)
..+.|.+|||.+-+.+.+-... ..+.-+.+++ .|.+|.++.+-.++..+..
T Consensus 295 ~agai~rfdpeta~ftv~p~pr--------------~n~gn~ql~gr~ge~W~~e~gvd~lv~~r~ 346 (353)
T COG4257 295 DAGAIGRFDPETARFTVLPIPR--------------PNSGNIQLDGRPGELWFTEAGVDALVTTRI 346 (353)
T ss_pred ccCceeecCcccceEEEecCCC--------------CCCCceeccCCCCceeecccCcceeEEEEe
Confidence 9999999999988888876431 2244567765 4579999999888877653
No 127
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=99.51 E-value=4.4e-12 Score=146.61 Aligned_cols=231 Identities=25% Similarity=0.361 Sum_probs=178.5
Q ss_pred CCCCceEEEeecCCeEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEEC--C
Q 001380 600 LKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADT--E 677 (1089)
Q Consensus 600 l~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~--~ 677 (1089)
+..|.++++++.+.++|+.+...++|.++|.+...+......| ..|++++++++++.+||+|. .
T Consensus 73 ~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG--------------~~P~~~~~~~~~~~vYV~n~~~~ 138 (381)
T COG3391 73 GVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVG--------------LGPVGLAVDPDGKYVYVANAGNG 138 (381)
T ss_pred CccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeec--------------cCCceEEECCCCCEEEEEecccC
Confidence 3789999999988899999999999999996655444333221 27999999999999999999 5
Q ss_pred CCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCC
Q 001380 678 NHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDG 757 (1089)
Q Consensus 678 n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g 757 (1089)
++.+.++|..++.+......|. .|.+++++|+|+.+|+++..++.|..+|..+..+.. ...+
T Consensus 139 ~~~vsvid~~t~~~~~~~~vG~-----------------~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~ 200 (381)
T COG3391 139 NNTVSVIDAATNKVTATIPVGN-----------------TPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVG 200 (381)
T ss_pred CceEEEEeCCCCeEEEEEecCC-----------------CcceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccc
Confidence 7999999999887776654442 689999999999999999999999999977666554 2111
Q ss_pred ccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCC--CeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCcccccc
Q 001380 758 YERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSES--SSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVL 835 (1089)
Q Consensus 758 ~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~--~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~ 835 (1089)
..-..+..|.+++++++|+++||++..+ +++.+++..++.+..... ....
T Consensus 201 ---------~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~-------------------~~~~ 252 (381)
T COG3391 201 ---------SLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDL-------------------PVGS 252 (381)
T ss_pred ---------cccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecc-------------------cccc
Confidence 0123456799999999999999999988 699999988766543210 0112
Q ss_pred ccCceEEEEccCC-cEEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEcc
Q 001380 836 LQHPLGVYCAKNG-QIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQ 901 (1089)
Q Consensus 836 l~~P~gva~~~~G-~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~ 901 (1089)
+ .|.+++++|+| .+||++...+.+..+|..+..+......+.. ....|..+++..
T Consensus 253 ~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~----------~~~~~~~~~~~~ 308 (381)
T COG3391 253 G-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNE----------ALGEPVSIAISP 308 (381)
T ss_pred C-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeeccccc----------ccccceecccee
Confidence 4 68999999998 5999999999999999988777776555433 344577777654
No 128
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=99.51 E-value=5.6e-14 Score=140.53 Aligned_cols=122 Identities=20% Similarity=0.171 Sum_probs=103.2
Q ss_pred CCCCCCCCccccCC-CCCceeecccc-cCCCEEEEEEe-cCCCcchhhh-hhhHHHHHHHcCCCCE-EEEEEeCCCCCCh
Q 001380 426 TTPIVPEFPAKLDW-LNTAPLQFRRD-LKGKVVVLDFW-TYCCINCMHV-LPDLEFLEKKYKDMPF-TVVGVHSAKFDNE 500 (1089)
Q Consensus 426 ~g~~~P~f~~~~~~-~~g~~~~l~~~-~~gk~vll~Fw-a~wC~~C~~~-~p~l~~l~~~~~~~~v-~vi~v~~~~~~~~ 500 (1089)
+|+.+|+|++.... -+|+.++| ++ ++||++||.|| +.||+.|..| ++.|++.+++|.+.|+ .|++||.
T Consensus 1 vG~~aPdF~l~~~~~~~g~~v~L-~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~------ 73 (155)
T cd03013 1 VGDKLPNVTLFEYVPGPPNPVNL-SELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSV------ 73 (155)
T ss_pred CCCcCCCeEeeeeccCCCceeeH-HHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEEC------
Confidence 58899999965321 13889999 77 68887777666 8999999999 9999999999998898 6999985
Q ss_pred hcHHHHHHHHHHcCC--ccceeecCChhHHHHhCCC-----------ceeEEEEECCCCcEEEEecCC
Q 001380 501 KDLEAIRNAVLRYGI--SHPVVNDGDMNLWRELGVN-----------SWPTFAVVGPNGKLLAQLAGE 555 (1089)
Q Consensus 501 ~~~~~~~~~~~~~~~--~~~v~~d~~~~l~~~~~v~-----------~~Pt~~lid~~G~i~~~~~G~ 555 (1089)
++....++|.+++++ +|+++.|.+.++++.||+. ..+.+|||| +|+|++.+...
T Consensus 74 D~~~~~~~~~~~~~~~~~f~lLsD~~~~~~~~ygv~~~~~~~~~~~~~~R~~fiId-~g~I~~~~~~~ 140 (155)
T cd03013 74 NDPFVMKAWGKALGAKDKIRFLADGNGEFTKALGLTLDLSAAGGGIRSKRYALIVD-DGKVKYLFVEE 140 (155)
T ss_pred CCHHHHHHHHHhhCCCCcEEEEECCCHHHHHHcCCCccccccCCcceeeeEEEEEC-CCEEEEEEEec
Confidence 678889999999998 8999999999999999983 257899999 79999886544
No 129
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=99.51 E-value=6.2e-12 Score=144.97 Aligned_cols=254 Identities=16% Similarity=0.237 Sum_probs=157.0
Q ss_pred CCCCceEEEeecCCeEEEEeCCC------------CEEEEEeC---CCCEE--EEEecCCCCCCCCCCCCccccCCccee
Q 001380 600 LKFPGKLAIDILNNRLFISDSNH------------NRIVVTDL---DGNFI--VQIGSSGEEGLRDGSFDDATFNRPQGL 662 (1089)
Q Consensus 600 l~~P~~vavd~~~g~L~vsd~~~------------~~I~~~~~---~g~~~--~~i~~~g~~g~~dG~~~~~~f~~P~gl 662 (1089)
+..|..|++|+ +|+|||++..+ .||++++. +|+.. +.+... +..|.||
T Consensus 13 ~~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~--------------l~~p~Gi 77 (367)
T TIGR02604 13 LRNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEE--------------LSMVTGL 77 (367)
T ss_pred cCCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecC--------------CCCccce
Confidence 78999999997 89999998532 38888854 45532 233322 5689999
Q ss_pred EEeeCCCEEEEEECCCCEEEEEECCCC------eEEEEec-CCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEEC
Q 001380 663 AYNAKKNLLYVADTENHALREIDFVND------TVRTLAG-NGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMA 735 (1089)
Q Consensus 663 a~d~~g~~lyVaD~~n~~I~~~d~~~g------~v~~~ag-~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~ 735 (1089)
++.++| |||++ ...|+++...++ ..+.+.. .+... ......+.+++++|+| .|||+..
T Consensus 78 ~~~~~G--lyV~~--~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~----------~~~~~~~~~l~~gpDG-~LYv~~G 142 (367)
T TIGR02604 78 AVAVGG--VYVAT--PPDILFLRDKDGDDKADGEREVLLSGFGGQI----------NNHHHSLNSLAWGPDG-WLYFNHG 142 (367)
T ss_pred eEecCC--EEEeC--CCeEEEEeCCCCCCCCCCccEEEEEccCCCC----------CcccccccCceECCCC-CEEEecc
Confidence 999776 99987 456887743221 4444431 11110 0012468899999987 8999876
Q ss_pred CC-------------------cEEEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCe
Q 001380 736 GQ-------------------HQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSS 796 (1089)
Q Consensus 736 ~~-------------------~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~ 796 (1089)
.+ +.|++++++++....++ .++.+|.|++++++| .+|++|.....
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a---------------~G~rnp~Gl~~d~~G-~l~~tdn~~~~ 206 (367)
T TIGR02604 143 NTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVA---------------HGFQNPYGHSVDSWG-DVFFCDNDDPP 206 (367)
T ss_pred cCCCceeccCCCccCcccccCceEEEEecCCCeEEEEe---------------cCcCCCccceECCCC-CEEEEccCCCc
Confidence 31 46899999888877775 457889999999988 99999986655
Q ss_pred EEEEEcCCCCeEEEecCCCCCCC---C-c--cccCCC----------------CCccccccccCceEEEEcc--------
Q 001380 797 IRALNLKTGGSRLLAGGDPIFPD---N-L--FKFGDR----------------DGMGSEVLLQHPLGVYCAK-------- 846 (1089)
Q Consensus 797 I~~~~~~~~~~~~~~g~~~~~~~---~-l--~~~g~~----------------dg~~~~~~l~~P~gva~~~-------- 846 (1089)
..++..-. .++...++. . . ..++.. .-...-.....|.|+++-.
T Consensus 207 ~~~i~~~~------~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ap~G~~~y~g~~fp~~~ 280 (367)
T TIGR02604 207 LCRVTPVA------EGGRNGYQSFNGRRYDHADRGADHEVPTGEWRQDDRGVETVGDVAGGGTAPCGIAFYRGDALPEEY 280 (367)
T ss_pred eeEEcccc------cccccCCCCCCCcccccccccccccccccccccccccccccccccCCCccccEEEEeCCCcCCHHH
Confidence 54443221 000000000 0 0 000000 0000001123588888862
Q ss_pred CCcEEEEeCCCCEEEEEeCC--CCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCC
Q 001380 847 NGQIYVADSYNHKIKKLDPA--SNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNN 912 (1089)
Q Consensus 847 ~G~lyVaD~~n~~I~~~d~~--~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n 912 (1089)
+|+++|++...++|.++..+ +..+..-. ..+..+ ...+.+|..|+++++|.|||+|..+
T Consensus 281 ~g~~fv~~~~~~~v~~~~l~~~g~~~~~~~----~~~l~~---~~~~~rp~dv~~~pDG~Lyv~d~~~ 341 (367)
T TIGR02604 281 RGLLLVGDAHGQLIVRYSLEPKGAGFKGER----PEFLRS---NDTWFRPVNVTVGPDGALYVSDWYD 341 (367)
T ss_pred CCCEEeeeccCCEEEEEEeecCCCccEeec----CceEec---CCCcccccceeECCCCCEEEEEecc
Confidence 47899999999999987643 33222110 011110 1134689999999999999999433
No 130
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=99.50 E-value=1.1e-13 Score=141.00 Aligned_cols=95 Identities=21% Similarity=0.303 Sum_probs=84.9
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCC-hHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCcEE
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSAD-RIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECI 243 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~-~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~v 243 (1089)
.++||+.++|++|+++|++++|+||+. ...+..+++.+++. .+ ....||+|++|..+++++|+++++|+
T Consensus 43 ~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~~~~~~~~~gl~-~~---------~~~~KP~p~~~~~~l~~~~~~~~~~l 112 (170)
T TIGR01668 43 EAYPALRDWIEELKAAGRKLLIVSNNAGEQRAKAVEKALGIP-VL---------PHAVKPPGCAFRRAHPEMGLTSEQVA 112 (170)
T ss_pred CcChhHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHcCCE-EE---------cCCCCCChHHHHHHHHHcCCCHHHEE
Confidence 568999999999999999999999988 57777777888874 22 13469999999999999999999999
Q ss_pred EEcCCh-hhHHHHHHcCCeEEEEcCCC
Q 001380 244 VIEDAL-AGVQAAKAAQMRCIAVTTTL 269 (1089)
Q Consensus 244 ~VGD~~-~Di~aA~~aG~~~i~V~~g~ 269 (1089)
||||+. +|+++|+++||.+++|.+|.
T Consensus 113 ~IGDs~~~Di~aA~~aGi~~i~v~~g~ 139 (170)
T TIGR01668 113 VVGDRLFTDVMGGNRNGSYTILVEPLV 139 (170)
T ss_pred EECCcchHHHHHHHHcCCeEEEEccCc
Confidence 999998 89999999999999999987
No 131
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.50 E-value=3.6e-11 Score=134.23 Aligned_cols=263 Identities=15% Similarity=0.191 Sum_probs=175.4
Q ss_pred CCeEEEEeCCC----CEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEEC---------C
Q 001380 612 NNRLFISDSNH----NRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADT---------E 677 (1089)
Q Consensus 612 ~g~L~vsd~~~----~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~---------~ 677 (1089)
..++||+|... ++|.++|.+ ++++.+|..+ ..|+++ ++|+|+.||||.+ .
T Consensus 12 ~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G---------------~~P~~~-~spDg~~lyva~~~~~R~~~G~~ 75 (352)
T TIGR02658 12 ARRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGG---------------FLPNPV-VASDGSFFAHASTVYSRIARGKR 75 (352)
T ss_pred CCEEEEECCcccccCceEEEEECCCCEEEEEEEcc---------------CCCcee-ECCCCCEEEEEeccccccccCCC
Confidence 56899999874 899999987 6666676654 278997 9999999999999 8
Q ss_pred CCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECC-CcEEEEEECCCCeEEE-EeC
Q 001380 678 NHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAG-QHQIWEHSTVDGVTRA-FSG 755 (1089)
Q Consensus 678 n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~-~~~I~~~~~~~g~~~~-~~g 755 (1089)
.+.|.+||..+.++..-...+.. ...+....|+.++++++|+.|||++.. .+.|-.+|..++.+.. +.-
T Consensus 76 ~d~V~v~D~~t~~~~~~i~~p~~---------p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v 146 (352)
T TIGR02658 76 TDYVEVIDPQTHLPIADIELPEG---------PRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV 146 (352)
T ss_pred CCEEEEEECccCcEEeEEccCCC---------chhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC
Confidence 89999999988765543322211 011234688999999999999999977 8889999988765432 110
Q ss_pred -CCc-----------cccCCCCCCC---------------------CccccCCceEEEcC-CCCEEEEEeCCCCeEEEEE
Q 001380 756 -DGY-----------ERNLNGSSSL---------------------NTSFAQPSGISLSP-DFMEIYVADSESSSIRALN 801 (1089)
Q Consensus 756 -~g~-----------~~~~~g~~~~---------------------~~~~~~P~glav~~-~g~~lyvad~~~~~I~~~~ 801 (1089)
.+. ....+|.... ..-|.+| .+.+ +|..+|++.. ++|+.++
T Consensus 147 p~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP---~~~~~dg~~~~vs~e--G~V~~id 221 (352)
T TIGR02658 147 PDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHP---AYSNKSGRLVWPTYT--GKIFQID 221 (352)
T ss_pred CCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCC---ceEcCCCcEEEEecC--CeEEEEe
Confidence 000 0011111110 0112445 3344 6767777765 8999999
Q ss_pred cCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceE---EEEccCC-cEEEEeC---------CCCEEEEEeCCCC
Q 001380 802 LKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLG---VYCAKNG-QIYVADS---------YNHKIKKLDPASN 868 (1089)
Q Consensus 802 ~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~g---va~~~~G-~lyVaD~---------~n~~I~~~d~~~~ 868 (1089)
+.+........ -.++.++.... . -.|-| ++++++| ++||+.. ..+.|.++|..++
T Consensus 222 ~~~~~~~~~~~------~~~~~~~~~~~---~---wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~ 289 (352)
T TIGR02658 222 LSSGDAKFLPA------IEAFTEAEKAD---G---WRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTG 289 (352)
T ss_pred cCCCcceecce------eeecccccccc---c---cCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCC
Confidence 77655443211 11222221100 0 12333 9999886 6999542 2368999999988
Q ss_pred eEEEEeccCCCCCCCCcccccccCCCceEEEccCCc--EEEEECCCCEEEEEeCCCCCceEEEEe
Q 001380 869 RVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGN--LFIADTNNNIIRYLDLNKEEPELQTLE 931 (1089)
Q Consensus 869 ~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~--lyVad~~n~~I~~~~~~~~~~~~~~l~ 931 (1089)
++......| .+|.+|++.++|+ ||+++..++.|.++|..+. ..+.++.
T Consensus 290 kvi~~i~vG--------------~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~-k~i~~i~ 339 (352)
T TIGR02658 290 KRLRKIELG--------------HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETG-KELSSVN 339 (352)
T ss_pred eEEEEEeCC--------------CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCC-eEEeeec
Confidence 776654443 3599999999886 7889888999999999887 3456653
No 132
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.50 E-value=7.7e-11 Score=132.07 Aligned_cols=252 Identities=16% Similarity=0.194 Sum_probs=176.6
Q ss_pred CceEEEeecCCeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEE
Q 001380 603 PGKLAIDILNNRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHAL 681 (1089)
Q Consensus 603 P~~vavd~~~g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I 681 (1089)
|.++++++.++.+|++....++|.+++.. ++.+..+... ..|..++++++|+.+|++...++.|
T Consensus 33 ~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~---------------~~~~~~~~~~~g~~l~~~~~~~~~l 97 (300)
T TIGR03866 33 PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSG---------------PDPELFALHPNGKILYIANEDDNLV 97 (300)
T ss_pred CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCC---------------CCccEEEECCCCCEEEEEcCCCCeE
Confidence 56789988666788998888999999986 5555444321 1357889999999899998777899
Q ss_pred EEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCcccc
Q 001380 682 REIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERN 761 (1089)
Q Consensus 682 ~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~~ 761 (1089)
+.+|+.++........+ ..|.+++++|+|..++++......+..+|..++........
T Consensus 98 ~~~d~~~~~~~~~~~~~-----------------~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~----- 155 (300)
T TIGR03866 98 TVIDIETRKVLAEIPVG-----------------VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV----- 155 (300)
T ss_pred EEEECCCCeEEeEeeCC-----------------CCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-----
Confidence 99999875533222111 25788999999988777776656677788776655432110
Q ss_pred CCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeE-EEecCCCCCCCCccccCCCCCccccccccCce
Q 001380 762 LNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSR-LLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPL 840 (1089)
Q Consensus 762 ~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~-~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~ 840 (1089)
-..|..++++++|..||++....+.|+.++..++... .+.... .+.. ..-..|.
T Consensus 156 ----------~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~---------~~~~------~~~~~~~ 210 (300)
T TIGR03866 156 ----------DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEI---------PGVH------PEAVQPV 210 (300)
T ss_pred ----------CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecc---------cccc------cccCCcc
Confidence 1247789999999888888767789999999866432 121000 0000 0012578
Q ss_pred EEEEccCCc-EEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCc-EEEEECCCCEEEEE
Q 001380 841 GVYCAKNGQ-IYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGN-LFIADTNNNIIRYL 918 (1089)
Q Consensus 841 gva~~~~G~-lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~-lyVad~~n~~I~~~ 918 (1089)
+++++++|+ +|++...+++|.++|..++.+......+ ..|.+++++++|. ||++...++.|.++
T Consensus 211 ~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~--------------~~~~~~~~~~~g~~l~~~~~~~~~i~v~ 276 (300)
T TIGR03866 211 GIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVG--------------QRVWQLAFTPDEKYLLTTNGVSNDVSVI 276 (300)
T ss_pred ceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeC--------------CCcceEEECCCCCEEEEEcCCCCeEEEE
Confidence 899999986 6888877889999999877765433211 2378999999886 77777778999999
Q ss_pred eCCCCCceEEEEe
Q 001380 919 DLNKEEPELQTLE 931 (1089)
Q Consensus 919 ~~~~~~~~~~~l~ 931 (1089)
++.+. ..+.++.
T Consensus 277 d~~~~-~~~~~~~ 288 (300)
T TIGR03866 277 DVAAL-KVIKSIK 288 (300)
T ss_pred ECCCC-cEEEEEE
Confidence 99987 2456665
No 133
>PLN02645 phosphoglycolate phosphatase
Probab=99.50 E-value=1.9e-14 Score=161.55 Aligned_cols=121 Identities=17% Similarity=0.160 Sum_probs=91.6
Q ss_pred HHHHHHHhCCCeEEEEcCCChHh-HHHHHHHCCCCCCCccEEEEcCCcc---CCCCCHHHHHHHHHHcCCCCCcEEEEcC
Q 001380 172 ELINQCKSKGLKVAVASSADRIK-VDANLAAAGLPVSMFDAIVSADAFE---NLKPAPDIFLSASKILNVPTSECIVIED 247 (1089)
Q Consensus 172 ~lL~~Lk~~Gi~vaIvSn~~~~~-~~~~l~~~gl~~~~fd~i~~~~~~~---~~KP~~~~~~~~l~~lgv~p~~~v~VGD 247 (1089)
.....|++++-.++|+||.+... ....+...|.. .+|+.+.++.... .+||+|.+|..+++++++++++++||||
T Consensus 177 ~a~~~l~~~~g~~~i~tn~d~~~~~~~~~~~~g~g-~~~~~i~~~~~~~~~~~gKP~p~~~~~a~~~~~~~~~~~~~VGD 255 (311)
T PLN02645 177 YATLCIRENPGCLFIATNRDAVTHLTDAQEWAGAG-SMVGAIKGSTEREPLVVGKPSTFMMDYLANKFGIEKSQICMVGD 255 (311)
T ss_pred HHHHHHhcCCCCEEEEeCCCCCCCCCCCCCccchH-HHHHHHHHHhCCCcccCCCChHHHHHHHHHHcCCCcccEEEEcC
Confidence 34455554344678888876533 22333445663 6777776655433 3699999999999999999999999999
Q ss_pred Ch-hhHHHHHHcCCeEEEEcCCC-CHHHHhh----cCCcEEecCcccCCHHHHH
Q 001380 248 AL-AGVQAAKAAQMRCIAVTTTL-SEERLKE----ASPSLIRKEIGSVSLNDIL 295 (1089)
Q Consensus 248 ~~-~Di~aA~~aG~~~i~V~~g~-~~~~l~~----~~~d~vi~dl~el~i~~ll 295 (1089)
++ +||.+|+++||++++|.+|. ..+++.+ ..|+++++++.++ .+++
T Consensus 256 ~~~~Di~~A~~aG~~~ilV~~G~~~~~~~~~~~~~~~pd~~~~~~~~l--~~~~ 307 (311)
T PLN02645 256 RLDTDILFGQNGGCKTLLVLSGVTSESMLLSPENKIQPDFYTSKISDF--LTLK 307 (311)
T ss_pred CcHHHHHHHHHcCCCEEEEcCCCCCHHHHHhccCCCCCCEEECCHHHH--HHHh
Confidence 98 99999999999999999998 5666644 5799999999887 4444
No 134
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=99.49 E-value=4.2e-13 Score=139.98 Aligned_cols=93 Identities=24% Similarity=0.183 Sum_probs=81.2
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCC--------------------ccCCCCC
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADA--------------------FENLKPA 224 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~--------------------~~~~KP~ 224 (1089)
.++||+.++|+.|+++|++++|+||+....++..++++++. .+|+.+++++. ...+.+|
T Consensus 72 ~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~-~~f~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~K 150 (188)
T TIGR01489 72 PIDPGFKEFIAFIKEHGIDFIVISDGNDFFIDPVLEGIGEK-DVFIEIYSNPASFDNDGRHIVWPHHCHGCCSCPCGCCK 150 (188)
T ss_pred CCCccHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHcCCh-hheeEEeccCceECCCCcEEEecCCCCccCcCCCCCCH
Confidence 78999999999999999999999999999999999999996 99999997643 1234567
Q ss_pred HHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCe
Q 001380 225 PDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMR 261 (1089)
Q Consensus 225 ~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~ 261 (1089)
++++++..++. +++++||||+.+|+.+|+++++-
T Consensus 151 ~~~~~~~~~~~---~~~~i~iGD~~~D~~aa~~~d~~ 184 (188)
T TIGR01489 151 GKVIHKLSEPK---YQHIIYIGDGVTDVCPAKLSDVV 184 (188)
T ss_pred HHHHHHHHhhc---CceEEEECCCcchhchHhcCCcc
Confidence 88888887765 79999999999999999999753
No 135
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=99.49 E-value=1.5e-13 Score=131.28 Aligned_cols=92 Identities=29% Similarity=0.404 Sum_probs=83.6
Q ss_pred CCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCcEEEE
Q 001380 166 GFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVI 245 (1089)
Q Consensus 166 ~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~v~V 245 (1089)
..|.+++.+.+++++|+++.|+||+....+...++++|++ .|. ...||.+..|+++++++++++++|+||
T Consensus 47 ~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~~l~v~-----fi~-----~A~KP~~~~fr~Al~~m~l~~~~vvmV 116 (175)
T COG2179 47 ATPELRAWLAELKEAGIKVVVVSNNKESRVARAAEKLGVP-----FIY-----RAKKPFGRAFRRALKEMNLPPEEVVMV 116 (175)
T ss_pred CCHHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhhhhcCCc-----eee-----cccCccHHHHHHHHHHcCCChhHEEEE
Confidence 4566778888899999999999999999999999999997 333 347999999999999999999999999
Q ss_pred cCCh-hhHHHHHHcCCeEEEEcC
Q 001380 246 EDAL-AGVQAAKAAQMRCIAVTT 267 (1089)
Q Consensus 246 GD~~-~Di~aA~~aG~~~i~V~~ 267 (1089)
||.+ +|+.+|+++||+||+|-.
T Consensus 117 GDqL~TDVlggnr~G~~tIlV~P 139 (175)
T COG2179 117 GDQLFTDVLGGNRAGMRTILVEP 139 (175)
T ss_pred cchhhhhhhcccccCcEEEEEEE
Confidence 9999 999999999999999965
No 136
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.49 E-value=4.5e-11 Score=127.95 Aligned_cols=290 Identities=16% Similarity=0.175 Sum_probs=185.5
Q ss_pred HHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHHHhcccccccCCCCCcccccCCCCCCCCCCCCCCceEEE
Q 001380 529 RELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALLFYGKKKLLDNTPLPLSLEKDNDPRLFTSPLKFPGKLAI 608 (1089)
Q Consensus 529 ~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~P~~vav 608 (1089)
+.....+-|+.+.++++++.++........-. -+.-.+++.++-+.+.+ ....+...|.-|++
T Consensus 34 ~~v~~~~nptyl~~~~~~~~LY~v~~~~~~gg------------vaay~iD~~~G~Lt~ln-----~~~~~g~~p~yvsv 96 (346)
T COG2706 34 QLVAELGNPTYLAVNPDQRHLYVVNEPGEEGG------------VAAYRIDPDDGRLTFLN-----RQTLPGSPPCYVSV 96 (346)
T ss_pred hhccccCCCceEEECCCCCEEEEEEecCCcCc------------EEEEEEcCCCCeEEEee-----ccccCCCCCeEEEE
Confidence 34445677999999999998887543322000 00111222222222211 12344566799999
Q ss_pred eecCCeEEEEeCCCCEEEEE--eCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEEEEEC
Q 001380 609 DILNNRLFISDSNHNRIVVT--DLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREIDF 686 (1089)
Q Consensus 609 d~~~g~L~vsd~~~~~I~~~--~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~~d~ 686 (1089)
|+.+..||+++.+.++|.++ ..+|.....++..-..|. |+-....-.+++..-++|+|++|+++|-+..+|..+++
T Consensus 97 d~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~--~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 97 DEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGS--GPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred CCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCC--CCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 98777899999988888776 445765443322111111 11112223457889999999999999999999999999
Q ss_pred CCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEE--EEECCCCeEEEEeCCCccccCCC
Q 001380 687 VNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIW--EHSTVDGVTRAFSGDGYERNLNG 764 (1089)
Q Consensus 687 ~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~--~~~~~~g~~~~~~g~g~~~~~~g 764 (1089)
+.|.++.....-.. +=..|+.|+|+|+++..|+...-+++|- .|+...|+...+........
T Consensus 175 ~dg~L~~~~~~~v~-------------~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~--- 238 (346)
T COG2706 175 DDGKLTPADPAEVK-------------PGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPE--- 238 (346)
T ss_pred ccCccccccccccC-------------CCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCcc---
Confidence 98877665432221 1237999999999999999998888765 45555566665543211110
Q ss_pred CCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEE--cCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEE
Q 001380 765 SSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALN--LKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGV 842 (1089)
Q Consensus 765 ~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~--~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gv 842 (1089)
.-.+..+...|.+++||+.||+++.+.++|..|. +.++....+ +.. ..--+.|.+.
T Consensus 239 ---dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~-~~~------------------~teg~~PR~F 296 (346)
T COG2706 239 ---DFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELV-GIT------------------PTEGQFPRDF 296 (346)
T ss_pred ---ccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEE-EEe------------------ccCCcCCccc
Confidence 0122345678999999999999999999876654 444444333 211 1113579999
Q ss_pred EEccCCc-EEEEeCC--CCEEEEEeCCCCeEEEEec
Q 001380 843 YCAKNGQ-IYVADSY--NHKIKKLDPASNRVSTLAG 875 (1089)
Q Consensus 843 a~~~~G~-lyVaD~~--n~~I~~~d~~~~~v~t~~g 875 (1089)
.+++.|+ |+++.-. +=.|.++|+.+|.++.+.-
T Consensus 297 ~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~ 332 (346)
T COG2706 297 NINPSGRFLIAANQKSDNITVFERDKETGRLTLLGR 332 (346)
T ss_pred eeCCCCCEEEEEccCCCcEEEEEEcCCCceEEeccc
Confidence 9999886 5566433 4455677999999988753
No 137
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=99.49 E-value=1.5e-13 Score=134.83 Aligned_cols=100 Identities=34% Similarity=0.514 Sum_probs=92.9
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCC----------------CCCHHHH
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENL----------------KPAPDIF 228 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~----------------KP~~~~~ 228 (1089)
.+++++.++|+.|+++|++++|+|++.+..++..++.+++. .+++.+++.+..... ||++..+
T Consensus 24 ~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (139)
T cd01427 24 ELYPGVKEALKELKEKGIKLALATNKSRREVLELLEELGLD-DYFDPVITSNGAAIYYPKEGLFLGGGPFDIGKPNPDKL 102 (139)
T ss_pred CcCcCHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHHcCCc-hhhhheeccchhhhhcccccccccccccccCCCCHHHH
Confidence 78999999999999999999999999999999999999996 788888887765544 9999999
Q ss_pred HHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEE
Q 001380 229 LSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAV 265 (1089)
Q Consensus 229 ~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V 265 (1089)
..++++++..++++++|||+.+|+++++++|+.+++|
T Consensus 103 ~~~~~~~~~~~~~~~~igD~~~d~~~~~~~g~~~i~v 139 (139)
T cd01427 103 LAALKLLGVDPEEVLMVGDSLNDIEMAKAAGGLGVAV 139 (139)
T ss_pred HHHHHHcCCChhhEEEeCCCHHHHHHHHHcCCceeeC
Confidence 9999999999999999999999999999999999875
No 138
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=99.48 E-value=5.2e-13 Score=132.69 Aligned_cols=182 Identities=15% Similarity=0.188 Sum_probs=127.6
Q ss_pred CceEEEEecCCcccCCchHHHHHHH----HH-HHHcCCCCCHHhHhhhcCCCHHHHHHHHHhhcCCC-CCCHHHHHHHHH
Q 001380 78 KVSAVLFDMDGVLCNSEEPSRRAAV----DV-FAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVK-GFDSEAAKKRFF 151 (1089)
Q Consensus 78 ~~k~ViFD~DGTL~d~~~~~~~a~~----~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 151 (1089)
.+++++||+|.||+.....+..++. +. .+++|+.... ...+.-.-...+...+....... ..+.++....+.
T Consensus 14 ~~~~l~FDiDdtLYp~St~i~~~~~~nI~~f~~eklgi~~e~--a~~L~~~~yk~YG~t~aGL~~~~~~~d~deY~~~V~ 91 (244)
T KOG3109|consen 14 NYKCLFFDIDDTLYPLSTGIQLMMRNNIQEFFVEKLGISEEE--AEELRESLYKEYGLTMAGLKAVGYIFDADEYHRFVH 91 (244)
T ss_pred cceEEEEecccccccCchhHHHHHHHHHHHHHHHHhCCChhh--hHHHHHHHHHHHhHHHHHHHHhcccCCHHHHHHHhh
Confidence 6899999999999987766555554 33 3346765332 21111111112222222221111 112333333333
Q ss_pred HHHHHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCcc------CCCCCH
Q 001380 152 EIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFE------NLKPAP 225 (1089)
Q Consensus 152 ~~~~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~------~~KP~~ 225 (1089)
..+ +.....+-+-.+++|-.|+.++ ..+.||+.+.++.++|+++|+. +.|+.|++.+-.. ..||.+
T Consensus 92 ~~L-----Plq~LkPD~~LRnlLL~l~~r~--k~~FTNa~k~HA~r~Lk~LGie-DcFegii~~e~~np~~~~~vcKP~~ 163 (244)
T KOG3109|consen 92 GRL-----PLQDLKPDPVLRNLLLSLKKRR--KWIFTNAYKVHAIRILKKLGIE-DCFEGIICFETLNPIEKTVVCKPSE 163 (244)
T ss_pred ccC-----cHhhcCCCHHHHHHHHhCcccc--EEEecCCcHHHHHHHHHHhChH-HhccceeEeeccCCCCCceeecCCH
Confidence 221 1111255677899999999875 8899999999999999999996 9999999986433 479999
Q ss_pred HHHHHHHHHcCCC-CCcEEEEcCChhhHHHHHHcCCeEEEEcCCC
Q 001380 226 DIFLSASKILNVP-TSECIVIEDALAGVQAAKAAQMRCIAVTTTL 269 (1089)
Q Consensus 226 ~~~~~~l~~lgv~-p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~ 269 (1089)
++|+.+++..|+. |.+++|+.|+..+|.+|++.||++++|....
T Consensus 164 ~afE~a~k~agi~~p~~t~FfDDS~~NI~~ak~vGl~tvlv~~~~ 208 (244)
T KOG3109|consen 164 EAFEKAMKVAGIDSPRNTYFFDDSERNIQTAKEVGLKTVLVGREH 208 (244)
T ss_pred HHHHHHHHHhCCCCcCceEEEcCchhhHHHHHhccceeEEEEeee
Confidence 9999999999997 9999999999999999999999999997743
No 139
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=99.47 E-value=5.8e-14 Score=136.32 Aligned_cols=197 Identities=19% Similarity=0.184 Sum_probs=139.1
Q ss_pred CCCCceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHH
Q 001380 75 KWGKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIY 154 (1089)
Q Consensus 75 ~~~~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (1089)
.+.+.++|+||+|.|++..+ .+.++.+..|+.-...++++.++.+...|.+.+..+..+...... ..
T Consensus 12 ~~~~~~aVcFDvDSTvi~eE-----gIdelA~~~G~~~~Va~~T~rAMng~~~F~eaL~~Rl~llqp~~~--------qv 78 (227)
T KOG1615|consen 12 LWRSADAVCFDVDSTVIQEE-----GIDELAAYCGVGEAVAEVTRRAMNGEADFQEALAARLSLLQPLQV--------QV 78 (227)
T ss_pred HHHhcCeEEEecCcchhHHh-----hHHHHHHHhCchHHHHHHHHHHhCCCCcHHHHHHHHHHHhcccHH--------HH
Confidence 45667999999999999766 677888888888888888888888877787777766544321211 11
Q ss_pred HHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCC--C-----c--cEEEEc-C---CccCC
Q 001380 155 LDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVS--M-----F--DAIVSA-D---AFENL 221 (1089)
Q Consensus 155 ~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~--~-----f--d~i~~~-~---~~~~~ 221 (1089)
....... ...+.||+++|+.+|+++|..++++|++++.++..+...+|++.. | | +.-+.+ + ....+
T Consensus 79 ~~~v~~~-k~~lT~Gi~eLv~~L~~~~~~v~liSGGF~~~i~~Va~~Lgi~~~n~yAN~l~fd~~Gk~~gfd~~~ptsds 157 (227)
T KOG1615|consen 79 EQFVIKQ-KPTLTPGIRELVSRLHARGTQVYLISGGFRQLIEPVAEQLGIPKSNIYANELLFDKDGKYLGFDTNEPTSDS 157 (227)
T ss_pred HHHHhcC-CCccCCCHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHhCCcHhhhhhheeeeccCCcccccccCCccccC
Confidence 1111121 347899999999999999999999999999999999999999821 1 1 122222 2 22235
Q ss_pred CCCHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccC
Q 001380 222 KPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSV 289 (1089)
Q Consensus 222 KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el 289 (1089)
--+++.+..+.+ +.+.+.++||||+.||++|... +..+++. .|+...+-...++.|.+.+|..|
T Consensus 158 ggKa~~i~~lrk--~~~~~~~~mvGDGatDlea~~p-a~afi~~-~g~~~r~~vk~nak~~~~~f~~L 221 (227)
T KOG1615|consen 158 GGKAEVIALLRK--NYNYKTIVMVGDGATDLEAMPP-ADAFIGF-GGNVIREGVKANAKWYVTDFYVL 221 (227)
T ss_pred CccHHHHHHHHh--CCChheeEEecCCccccccCCc-hhhhhcc-CCceEcHhhHhccHHHHHHHHHH
Confidence 567788877777 7777999999999999998877 3333333 23333333445677777777655
No 140
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=5.4e-13 Score=131.82 Aligned_cols=154 Identities=19% Similarity=0.263 Sum_probs=120.0
Q ss_pred CCCCCCCCCCccccCCCCCc---eeecccccCCCEEEEEEe-cCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCC
Q 001380 424 RKTTPIVPEFPAKLDWLNTA---PLQFRRDLKGKVVVLDFW-TYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDN 499 (1089)
Q Consensus 424 ~~~g~~~P~f~~~~~~~~g~---~~~l~~~~~gk~vll~Fw-a~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~ 499 (1089)
..+|+.+|+|+.+... .|. ++++ +++.||++||.|| +...+.|..|+..+.+++++|++.|+++||+|+ +.
T Consensus 3 ~lIg~~aP~F~~~a~~-~~~~~~~i~l-~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~---Ds 77 (194)
T COG0450 3 SLIGKKAPDFTANAVL-GGEIFEEITL-SDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVST---DS 77 (194)
T ss_pred cccCCcCCCcEEEEEe-cCceeeEEec-hhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEec---Cc
Confidence 3589999999975332 553 8999 8888899999999 788899999999999999999999999999998 66
Q ss_pred hhcHHHHHHHHHHc-C---CccceeecCChhHHHHhCCC------ceeEEEEECCCCcEEEEecCCC----chhhHHHHH
Q 001380 500 EKDLEAIRNAVLRY-G---ISHPVVNDGDMNLWRELGVN------SWPTFAVVGPNGKLLAQLAGEG----HRKDLDDLV 565 (1089)
Q Consensus 500 ~~~~~~~~~~~~~~-~---~~~~v~~d~~~~l~~~~~v~------~~Pt~~lid~~G~i~~~~~G~~----~~~~l~~~l 565 (1089)
.....+|++...+. + ++||++.|.+++++++||+. ++..+|||||+|+|+....-.. +.+++.+.|
T Consensus 78 ~fsH~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~ygvl~~~~g~a~R~~FIIDp~g~ir~~~v~~~~iGRn~dEilR~i 157 (194)
T COG0450 78 VFSHKAWKATIREAGGIGKIKFPMIADPKGEIARAYGVLHPEEGLALRGTFIIDPDGVIRHILVNPLTIGRNVDEILRVI 157 (194)
T ss_pred HHHHHHHHhcHHhcCCccceecceEEcCchhHHHHcCCcccCCCcceeEEEEECCCCeEEEEEEecCCCCcCHHHHHHHH
Confidence 77788888776553 3 68999999999999999984 5788999999999998844332 345555555
Q ss_pred HHHHHHhcccccccCCCC
Q 001380 566 EAALLFYGKKKLLDNTPL 583 (1089)
Q Consensus 566 ~~~l~~~~~~~~l~~~~~ 583 (1089)
+.+ +.....|.+..-.+
T Consensus 158 dAl-q~~~~hg~vcPanW 174 (194)
T COG0450 158 DAL-QFVAKHGEVCPANW 174 (194)
T ss_pred HHH-HHHHHhCCCccCCC
Confidence 443 33333355444433
No 141
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=1.6e-13 Score=130.12 Aligned_cols=90 Identities=26% Similarity=0.394 Sum_probs=82.3
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
.+++|||+|||+||+||+...|.|+++..+|.++ +.+.-|.+ |...++|.+|
T Consensus 60 S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~-~k~~kvdt---------------------------D~~~ela~~Y 111 (150)
T KOG0910|consen 60 SDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGK-FKLYKVDT---------------------------DEHPELAEDY 111 (150)
T ss_pred cCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCe-EEEEEEcc---------------------------ccccchHhhc
Confidence 4689999999999999999999999999999765 88888854 7788999999
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHH
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALL 570 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~ 570 (1089)
+|.++||++++ ++|+.+.+..|..+.+.+.++|+..+.
T Consensus 112 ~I~avPtvlvf-knGe~~d~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 112 EISAVPTVLVF-KNGEKVDRFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred ceeeeeEEEEE-ECCEEeeeecccCCHHHHHHHHHHHhc
Confidence 99999999999 899999999999999999999988764
No 142
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=99.45 E-value=1.3e-13 Score=149.67 Aligned_cols=120 Identities=15% Similarity=0.211 Sum_probs=86.0
Q ss_pred CccHHHHHHHHHhCCCeEEEEcCCChHhHHH--HH-HHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCcEE
Q 001380 167 FPGALELINQCKSKGLKVAVASSADRIKVDA--NL-AAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECI 243 (1089)
Q Consensus 167 ~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~--~l-~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~v 243 (1089)
++.....+..|+ +|.+ .|+||.+...... .+ ..-.+ ...++...+.+.+..+||+|.+|+.+++++++++++++
T Consensus 123 y~~l~~a~~~l~-~g~~-~i~tN~D~~~~~~~~~~~~~G~~-~~~i~~~~~~~~~~~gKP~~~~~~~~~~~~~~~~~~~~ 199 (249)
T TIGR01457 123 YEKFATATLAIR-KGAH-FIGTNGDLAIPTERGLLPGNGSL-ITVLEVATGVKPVYIGKPNAIIMEKAVEHLGTEREETL 199 (249)
T ss_pred HHHHHHHHHHHH-CCCe-EEEECCCCCCCCCCCCCCCcHHH-HHHHHHHhCCCccccCCChHHHHHHHHHHcCCCcccEE
Confidence 444555566664 4565 7777765533211 00 00011 12234445566677789999999999999999999999
Q ss_pred EEcCCh-hhHHHHHHcCCeEEEEcCCC-CHHHHhh--cCCcEEecCcccC
Q 001380 244 VIEDAL-AGVQAAKAAQMRCIAVTTTL-SEERLKE--ASPSLIRKEIGSV 289 (1089)
Q Consensus 244 ~VGD~~-~Di~aA~~aG~~~i~V~~g~-~~~~l~~--~~~d~vi~dl~el 289 (1089)
||||++ +||.+|+++||++++|.+|. ..+++.. ..|+++++++.++
T Consensus 200 ~VGD~~~~Di~~a~~~G~~~v~v~~G~~~~~~~~~~~~~pd~~v~~l~~~ 249 (249)
T TIGR01457 200 MVGDNYLTDIRAGIDAGIDTLLVHTGVTKAEEVAGLPIAPTHVVSSLAEW 249 (249)
T ss_pred EECCCchhhHHHHHHcCCcEEEEcCCCCCHHHHhcCCCCCCEEeCChhhC
Confidence 999997 89999999999999999998 5555554 5799999988764
No 143
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=99.45 E-value=6.8e-13 Score=141.94 Aligned_cols=211 Identities=24% Similarity=0.278 Sum_probs=133.4
Q ss_pred CCCCceEEEEecCCcccCCchHHHHHHHH--HHHHcCCCCCHHhHhhhcCCCHHHHHHHHHhhcCCCCCCHHH--HHHHH
Q 001380 75 KWGKVSAVLFDMDGVLCNSEEPSRRAAVD--VFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVKGFDSEA--AKKRF 150 (1089)
Q Consensus 75 ~~~~~k~ViFD~DGTL~d~~~~~~~a~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 150 (1089)
++..+++++||+||||+++...+..+.+. .+++.|++ .-.+++...++.+.+.+.+....+.+. ..+. .....
T Consensus 4 ~~~~y~~~l~DlDGvl~~G~~~ipga~e~l~~L~~~g~~--~iflTNn~~~s~~~~~~~L~~~~~~~~-~~~~i~TS~~a 80 (269)
T COG0647 4 VMDKYDGFLFDLDGVLYRGNEAIPGAAEALKRLKAAGKP--VIFLTNNSTRSREVVAARLSSLGGVDV-TPDDIVTSGDA 80 (269)
T ss_pred hhhhcCEEEEcCcCceEeCCccCchHHHHHHHHHHcCCe--EEEEeCCCCCCHHHHHHHHHhhcCCCC-CHHHeecHHHH
Confidence 45678999999999999999877766544 34444543 345666777777777777766555432 2222 22222
Q ss_pred HHHHHHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcC----------C----ChHhHHHHHHHC--CCC--CCCccEE
Q 001380 151 FEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASS----------A----DRIKVDANLAAA--GLP--VSMFDAI 212 (1089)
Q Consensus 151 ~~~~~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn----------~----~~~~~~~~l~~~--gl~--~~~fd~i 212 (1089)
...|..+..+. .....-|...+.+.|+..|+.+.--.+ - ..+.....+..+ |.. +..-|.+
T Consensus 81 t~~~l~~~~~~-~kv~viG~~~l~~~l~~~G~~~~~~~~~~~~d~Vv~g~d~~~~~e~l~~a~~~i~~g~~fI~tNpD~~ 159 (269)
T COG0647 81 TADYLAKQKPG-KKVYVIGEEGLKEELEGAGFELVDEEEPARVDAVVVGLDRTLTYEKLAEALLAIAAGAPFIATNPDLT 159 (269)
T ss_pred HHHHHHhhCCC-CEEEEECCcchHHHHHhCCcEEeccCCCCcccEEEEecCCCCCHHHHHHHHHHHHcCCcEEEeCCCcc
Confidence 33333332221 124455666677777777653332111 1 112222222222 221 0001222
Q ss_pred EEc---------------------CCccCCCCCHHHHHHHHHHcCCCCCcEEEEcCCh-hhHHHHHHcCCeEEEEcCCCC
Q 001380 213 VSA---------------------DAFENLKPAPDIFLSASKILNVPTSECIVIEDAL-AGVQAAKAAQMRCIAVTTTLS 270 (1089)
Q Consensus 213 ~~~---------------------~~~~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~-~Di~aA~~aG~~~i~V~~g~~ 270 (1089)
+-. +....+||.+.+|+.++++++..+++++||||++ +||++|+++||.+++|.+|.+
T Consensus 160 ~p~~~g~~pgaGai~~~~~~~tg~~~~~~GKP~~~i~~~al~~~~~~~~~~~mVGD~~~TDI~~a~~~G~~t~LV~TGv~ 239 (269)
T COG0647 160 VPTERGLRPGAGAIAALLEQATGREPTVIGKPSPAIYEAALEKLGLDRSEVLMVGDRLDTDILGAKAAGLDTLLVLTGVS 239 (269)
T ss_pred ccCCCCCccCcHHHHHHHHHhhCCcccccCCCCHHHHHHHHHHhCCCcccEEEEcCCchhhHHHHHHcCCCEEEEccCCC
Confidence 211 1123589999999999999999999999999999 999999999999999999984
Q ss_pred -HHHHh--hcCCcEEecCcccC
Q 001380 271 -EERLK--EASPSLIRKEIGSV 289 (1089)
Q Consensus 271 -~~~l~--~~~~d~vi~dl~el 289 (1089)
.+++. ...|+|+.+++.++
T Consensus 240 ~~~~~~~~~~~p~~v~~sl~~~ 261 (269)
T COG0647 240 SAEDLDRAEVKPTYVVDSLAEL 261 (269)
T ss_pred ChhhhhhhccCCcchHhhHHHH
Confidence 55444 35789999999888
No 144
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=99.44 E-value=9.8e-13 Score=147.07 Aligned_cols=100 Identities=17% Similarity=0.212 Sum_probs=88.3
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCC---------------ChHhHHHHHHHCCCCCCCccEEE-E----cCCccCCCCC
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSA---------------DRIKVDANLAAAGLPVSMFDAIV-S----ADAFENLKPA 224 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~---------------~~~~~~~~l~~~gl~~~~fd~i~-~----~~~~~~~KP~ 224 (1089)
.++||+.++|++|+++|++++|+||. ....+..+++.+++. |+.++ + +++....||+
T Consensus 30 ~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~~~~~l~~~~~~i~~iL~~~gl~---fd~i~i~~~~~sd~~~~rKP~ 106 (354)
T PRK05446 30 AFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFPQEDFDPPHNLMMQIFESQGIK---FDEVLICPHFPEDNCSCRKPK 106 (354)
T ss_pred eECcCHHHHHHHHHhCCCeEEEEECCccccCccccHHHHhhHHHHHHHHHHHcCCc---eeeEEEeCCcCcccCCCCCCC
Confidence 78999999999999999999999995 244566778888884 66654 4 3566788999
Q ss_pred HHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcC
Q 001380 225 PDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTT 267 (1089)
Q Consensus 225 ~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~ 267 (1089)
|.++..+++++++++++++||||+.+|+++|+++||++|+|+.
T Consensus 107 p~~l~~a~~~l~v~~~~svmIGDs~sDi~aAk~aGi~~I~v~~ 149 (354)
T PRK05446 107 TGLVEEYLAEGAIDLANSYVIGDRETDVQLAENMGIKGIRYAR 149 (354)
T ss_pred HHHHHHHHHHcCCCcccEEEEcCCHHHHHHHHHCCCeEEEEEC
Confidence 9999999999999999999999999999999999999999965
No 145
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=99.43 E-value=7.7e-13 Score=140.73 Aligned_cols=121 Identities=20% Similarity=0.083 Sum_probs=91.1
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCc---cEEEEcCCccCCCCCHHHH----------HHH
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMF---DAIVSADAFENLKPAPDIF----------LSA 231 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~f---d~i~~~~~~~~~KP~~~~~----------~~~ 231 (1089)
.++||+.++|+.|+++|++++|+|++....++.+++.++.. .++ +.++.++.....||.+..+ ..+
T Consensus 70 ~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~~~~-~~i~~n~~~~~~~~~~~~~p~~~~~~~~~~cg~~K~~~ 148 (214)
T TIGR03333 70 EIREGFREFVAFINEHGIPFYVISGGMDFFVYPLLEGIVEK-DRIYCNEADFSNEYIHIDWPHPCDGTCQNQCGCCKPSL 148 (214)
T ss_pred cccccHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHhhCCc-ccEEeceeEeeCCeeEEeCCCCCccccccCCCCCHHHH
Confidence 78999999999999999999999999999999999988553 444 3455566666778887765 477
Q ss_pred HHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhh-cCCcEEecCcccC
Q 001380 232 SKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKE-ASPSLIRKEIGSV 289 (1089)
Q Consensus 232 l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~-~~~d~vi~dl~el 289 (1089)
+++++..+++++||||+.+|+.+|+.||+ +.+ .+.-...... ..+...+.+|.|+
T Consensus 149 l~~~~~~~~~~i~iGDg~~D~~~a~~Ad~--~~a-r~~l~~~~~~~~~~~~~~~~f~di 204 (214)
T TIGR03333 149 IRKLSEPNDYHIVIGDSVTDVEAAKQSDL--CFA-RDYLLNECEELGLNHAPFQDFYDV 204 (214)
T ss_pred HHHHhhcCCcEEEEeCCHHHHHHHHhCCe--eEe-hHHHHHHHHHcCCCccCcCCHHHH
Confidence 88888888999999999999999999997 333 3211111122 2244556676666
No 146
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=99.43 E-value=1.7e-12 Score=136.18 Aligned_cols=175 Identities=20% Similarity=0.177 Sum_probs=128.4
Q ss_pred CCceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHH
Q 001380 77 GKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIYLD 156 (1089)
Q Consensus 77 ~~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (1089)
++.++++|||||||++ ...+..+.+..|.......++...+....++...+......-...+.+..+++.+.+
T Consensus 3 ~~~~L~vFD~D~TLi~-----~~~~~~~~~~~g~~~~v~~~t~~~~~~~~~~~~~~~~~v~~l~g~~~~~v~~~~~~~-- 75 (212)
T COG0560 3 RMKKLAVFDLDGTLIN-----AELIDELARGAGVGEEVLAITERAMRGELDFEESLRLRVALLKGLPVEVLEEVREEF-- 75 (212)
T ss_pred CccceEEEecccchhh-----HHHHHHHHHHhCCHHHHHHHHHHHhcccccHHHHHHHHHHHhCCCCHHHHHHHHHhc--
Confidence 4568999999999999 346677777777776666666555555554444443322211113333333333332
Q ss_pred HhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCC-------c---cCCCCCHH
Q 001380 157 KYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADA-------F---ENLKPAPD 226 (1089)
Q Consensus 157 ~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~-------~---~~~KP~~~ 226 (1089)
..++||+.++++.++++|.+++|+|++....++.+.+++|++ ..+...+..++ . -..+-|..
T Consensus 76 -------~~l~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~lg~d-~~~an~l~~~dG~ltG~v~g~~~~~~~K~~ 147 (212)
T COG0560 76 -------LRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPIAERLGID-YVVANELEIDDGKLTGRVVGPICDGEGKAK 147 (212)
T ss_pred -------CcCCccHHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHhCCc-hheeeEEEEeCCEEeceeeeeecCcchHHH
Confidence 278999999999999999999999999999999999999997 66654444433 1 12456788
Q ss_pred HHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcC
Q 001380 227 IFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTT 267 (1089)
Q Consensus 227 ~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~ 267 (1089)
.+.+.++++|+++++++++||+.||+.+-+.+|.. +.++.
T Consensus 148 ~l~~~~~~~g~~~~~~~a~gDs~nDlpml~~ag~~-ia~n~ 187 (212)
T COG0560 148 ALRELAAELGIPLEETVAYGDSANDLPMLEAAGLP-IAVNP 187 (212)
T ss_pred HHHHHHHHcCCCHHHeEEEcCchhhHHHHHhCCCC-eEeCc
Confidence 89999999999999999999999999999999965 44544
No 147
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=99.43 E-value=2.4e-12 Score=147.33 Aligned_cols=205 Identities=18% Similarity=0.225 Sum_probs=161.9
Q ss_pred CCCCCceEEEeecCCeEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCC
Q 001380 599 PLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTEN 678 (1089)
Q Consensus 599 ~l~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n 678 (1089)
+-.-|.||++|=.+..+|++|...++|.+-.++|.--++|-.. .+.+|.|||+|..++.+|++|..+
T Consensus 1023 p~~IiVGidfDC~e~mvyWtDv~g~SI~rasL~G~Ep~ti~n~-------------~L~SPEGiAVDh~~Rn~ywtDS~l 1089 (1289)
T KOG1214|consen 1023 PGSIIVGIDFDCRERMVYWTDVAGRSISRASLEGAEPETIVNS-------------GLISPEGIAVDHIRRNMYWTDSVL 1089 (1289)
T ss_pred ccceeeeeecccccceEEEeecCCCccccccccCCCCceeecc-------------cCCCccceeeeeccceeeeecccc
Confidence 3345667788877889999999999999988887655555443 267999999999988899999999
Q ss_pred CEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECC--CcEEEEEECCCCeEEEEeCC
Q 001380 679 HALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAG--QHQIWEHSTVDGVTRAFSGD 756 (1089)
Q Consensus 679 ~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~--~~~I~~~~~~~g~~~~~~g~ 756 (1089)
.+|-+-.+++.+-+.+..++ |-+|.+|++|+-++.||++|+. |-.|-..+.++..-+.+.
T Consensus 1090 D~IevA~LdG~~rkvLf~td----------------LVNPR~iv~D~~rgnLYwtDWnRenPkIets~mDG~NrRili-- 1151 (1289)
T KOG1214|consen 1090 DKIEVALLDGSERKVLFYTD----------------LVNPRAIVVDPIRGNLYWTDWNRENPKIETSSMDGENRRILI-- 1151 (1289)
T ss_pred chhheeecCCceeeEEEeec----------------ccCcceEEeecccCceeeccccccCCcceeeccCCccceEEe--
Confidence 99999888888888887444 7799999999999999999986 345655554443333333
Q ss_pred CccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccc
Q 001380 757 GYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLL 836 (1089)
Q Consensus 757 g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l 836 (1089)
+.-+..|+||.++|..+.|-++|.+++++..+.+++.+.+++. ..|
T Consensus 1152 ------------n~DigLPNGLtfdpfs~~LCWvDAGt~rleC~~p~g~gRR~i~----------------------~~L 1197 (1289)
T KOG1214|consen 1152 ------------NTDIGLPNGLTFDPFSKLLCWVDAGTKRLECTLPDGTGRRVIQ----------------------NNL 1197 (1289)
T ss_pred ------------ecccCCCCCceeCcccceeeEEecCCcceeEecCCCCcchhhh----------------------hcc
Confidence 2345579999999998899999999999999998865444332 138
Q ss_pred cCceEEEEccCCcEEEEeCCCCEEEEEeCCCCe
Q 001380 837 QHPLGVYCAKNGQIYVADSYNHKIKKLDPASNR 869 (1089)
Q Consensus 837 ~~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~ 869 (1089)
|.|.+|+-+.+ ++|++|+..++|..++..++.
T Consensus 1198 qYPF~itsy~~-~fY~TDWk~n~vvsv~~~~~~ 1229 (1289)
T KOG1214|consen 1198 QYPFSITSYAD-HFYHTDWKRNGVVSVNKHSGQ 1229 (1289)
T ss_pred cCceeeeeccc-cceeeccccCceEEeeccccc
Confidence 99999998755 599999999999999876543
No 148
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.43 E-value=9.5e-10 Score=123.23 Aligned_cols=235 Identities=19% Similarity=0.241 Sum_probs=164.6
Q ss_pred CeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEEEEECCCCeE
Q 001380 613 NRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTV 691 (1089)
Q Consensus 613 g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~v 691 (1089)
+++|++....+.|.++|.+ ++.+..+... ..|.+++++++|+.+|++...++.|+.+|..++.+
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~---------------~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~ 65 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVG---------------QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEV 65 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECC---------------CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcE
Confidence 4689999999999999986 6666665432 14688999999998999988889999999987765
Q ss_pred EEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCccccCCCCCCCCcc
Q 001380 692 RTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTS 771 (1089)
Q Consensus 692 ~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~ 771 (1089)
......+ ..+..++++++++.+|++....+.|+.||..++........
T Consensus 66 ~~~~~~~-----------------~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~--------------- 113 (300)
T TIGR03866 66 IGTLPSG-----------------PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV--------------- 113 (300)
T ss_pred EEeccCC-----------------CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC---------------
Confidence 4432111 13567899999989999987788999999887643322110
Q ss_pred ccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccCCc-E
Q 001380 772 FAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQ-I 850 (1089)
Q Consensus 772 ~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~-l 850 (1089)
-..|.+++++++|+.++++......+..++..++........ -..|.+++++++|. +
T Consensus 114 ~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~----------------------~~~~~~~~~s~dg~~l 171 (300)
T TIGR03866 114 GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV----------------------DQRPRFAEFTADGKEL 171 (300)
T ss_pred CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc----------------------CCCccEEEECCCCCEE
Confidence 124789999999977777766556677778765433211000 12467789999986 6
Q ss_pred EEEeCCCCEEEEEeCCCCeE-EEEeccCCCCCCCCcccccccCCCceEEEccCCc-EEEEECCCCEEEEEeCCCC
Q 001380 851 YVADSYNHKIKKLDPASNRV-STLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGN-LFIADTNNNIIRYLDLNKE 923 (1089)
Q Consensus 851 yVaD~~n~~I~~~d~~~~~v-~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~-lyVad~~n~~I~~~~~~~~ 923 (1089)
|++....++|+.+|..++.+ .++... ..+. ...-..|.+++++++|+ +|++...+++|.++++.+.
T Consensus 172 ~~~~~~~~~v~i~d~~~~~~~~~~~~~-~~~~------~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~ 239 (300)
T TIGR03866 172 WVSSEIGGTVSVIDVATRKVIKKITFE-IPGV------HPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY 239 (300)
T ss_pred EEEcCCCCEEEEEEcCcceeeeeeeec-cccc------ccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCC
Confidence 67766678999999987754 333211 1000 00123588999999886 6888877889999999765
No 149
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=99.42 E-value=5.5e-12 Score=131.83 Aligned_cols=181 Identities=13% Similarity=0.122 Sum_probs=114.7
Q ss_pred eEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHhc
Q 001380 80 SAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIYLDKYA 159 (1089)
Q Consensus 80 k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (1089)
.+++||+||||++. .|.+...+.|+.. ..++..-......+...............+.. .+.+ +.
T Consensus 2 ~la~FDlD~TLi~~------~w~~~~~~~g~~~--~~~~~~~~~~~~~~~~~r~~ll~~~g~~~~~i----~~~~-~~-- 66 (203)
T TIGR02137 2 EIACLDLEGVLVPE------IWIAFAEKTGIDA--LKATTRDIPDYDVLMKQRLRILDEHGLKLGDI----QEVI-AT-- 66 (203)
T ss_pred eEEEEeCCcccHHH------HHHHHHHHcCCcH--HHHHhcCCcCHHHHHHHHHHHHHHCCCCHHHH----HHHH-Hh--
Confidence 56999999999964 4778888888532 22222212223333333222221112122222 1111 11
Q ss_pred CCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccE--------EEEcCCccCCCCCHHHHHHH
Q 001380 160 KPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDA--------IVSADAFENLKPAPDIFLSA 231 (1089)
Q Consensus 160 ~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~--------i~~~~~~~~~KP~~~~~~~~ 231 (1089)
..++||+.++|+.|+++ ++++|+|++....++.+++++|++ .+|.. .+++... ..++.+..+...
T Consensus 67 ----i~l~pga~ell~~lk~~-~~~~IVS~~~~~~~~~il~~lgi~-~~~an~l~~~~~g~~tG~~~-~~~~~K~~~l~~ 139 (203)
T TIGR02137 67 ----LKPLEGAVEFVDWLRER-FQVVILSDTFYEFSQPLMRQLGFP-TLLCHKLEIDDSDRVVGYQL-RQKDPKRQSVIA 139 (203)
T ss_pred ----CCCCccHHHHHHHHHhC-CeEEEEeCChHHHHHHHHHHcCCc-hhhceeeEEecCCeeECeee-cCcchHHHHHHH
Confidence 16899999999999998 499999999999999999999997 77752 2222222 345556655555
Q ss_pred HHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcE-EecCcccC
Q 001380 232 SKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSL-IRKEIGSV 289 (1089)
Q Consensus 232 l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~-vi~dl~el 289 (1089)
+++.+. ++++|||+.||+.+++.+|+..+... .+.+.+..+++ ++.+.++|
T Consensus 140 l~~~~~---~~v~vGDs~nDl~ml~~Ag~~ia~~a----k~~~~~~~~~~~~~~~~~~~ 191 (203)
T TIGR02137 140 FKSLYY---RVIAAGDSYNDTTMLSEAHAGILFHA----PENVIREFPQFPAVHTYEDL 191 (203)
T ss_pred HHhhCC---CEEEEeCCHHHHHHHHhCCCCEEecC----CHHHHHhCCCCCcccCHHHH
Confidence 666664 79999999999999999998766652 33344433443 44555554
No 150
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=99.42 E-value=1.7e-12 Score=137.41 Aligned_cols=96 Identities=18% Similarity=0.082 Sum_probs=81.6
Q ss_pred CCCCccHHHHHHHHHhCCCeEEEEcCCC----hHhHHHHHHHCCC--CCCCccEEEEcCCccCCCCCHHHHHHHHHHcCC
Q 001380 164 GIGFPGALELINQCKSKGLKVAVASSAD----RIKVDANLAAAGL--PVSMFDAIVSADAFENLKPAPDIFLSASKILNV 237 (1089)
Q Consensus 164 ~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~----~~~~~~~l~~~gl--~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv 237 (1089)
..++||+.++|+.|+++|++++++||+. ...++.+++.+|+ . .+|+.+++++.. .||++.. .++++++
T Consensus 113 a~p~~Ga~elL~~L~~~G~~I~iVTnR~~~k~~~t~~~Llk~~gip~~-~~f~vil~gd~~--~K~~K~~---~l~~~~i 186 (237)
T PRK11009 113 SIPKEVARQLIDMHVKRGDSIYFITGRTATKTETVSKTLADDFHIPAD-NMNPVIFAGDKP--GQYTKTQ---WLKKKNI 186 (237)
T ss_pred CcchHHHHHHHHHHHHCCCeEEEEeCCCCcccHHHHHHHHHHcCCCcc-cceeEEEcCCCC--CCCCHHH---HHHhcCC
Confidence 4789999999999999999999999963 4466777777999 6 788999888753 6777653 5567776
Q ss_pred CCCcEEEEcCChhhHHHHHHcCCeEEEEcCCC
Q 001380 238 PTSECIVIEDALAGVQAAKAAQMRCIAVTTTL 269 (1089)
Q Consensus 238 ~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~ 269 (1089)
++||||+.+|+++|++||+++|.|.+|.
T Consensus 187 ----~I~IGDs~~Di~aA~~AGi~~I~v~~G~ 214 (237)
T PRK11009 187 ----RIFYGDSDNDITAAREAGARGIRILRAA 214 (237)
T ss_pred ----eEEEcCCHHHHHHHHHcCCcEEEEecCC
Confidence 8999999999999999999999999986
No 151
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=99.41 E-value=3.7e-11 Score=132.61 Aligned_cols=210 Identities=18% Similarity=0.276 Sum_probs=146.8
Q ss_pred cceeEEeeCCCEEEEEECCCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCc
Q 001380 659 PQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQH 738 (1089)
Q Consensus 659 P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~ 738 (1089)
..|..++++++.||++|..+++|+++++.+|..+.+...+. .+.++.++..+ .|+.+..
T Consensus 27 gEgP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~-----------------~~~~~~~d~~g-~Lv~~~~--- 85 (307)
T COG3386 27 GEGPVWDPDRGALLWVDILGGRIHRLDPETGKKRVFPSPGG-----------------FSSGALIDAGG-RLIACEH--- 85 (307)
T ss_pred ccCccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEECCCC-----------------cccceeecCCC-eEEEEcc---
Confidence 46777888888899999999999999999888888864332 35567777655 7777764
Q ss_pred EEEEEECCCCeE-EEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCC-----------CCeEEEEEcCCCC
Q 001380 739 QIWEHSTVDGVT-RAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSE-----------SSSIRALNLKTGG 806 (1089)
Q Consensus 739 ~I~~~~~~~g~~-~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~-----------~~~I~~~~~~~~~ 806 (1089)
.++.++.+.+.. +.+..... ......|+.+.++++| .+|+.+.. .++|+++++.++.
T Consensus 86 g~~~~~~~~~~~~t~~~~~~~----------~~~~~r~ND~~v~pdG-~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~ 154 (307)
T COG3386 86 GVRLLDPDTGGKITLLAEPED----------GLPLNRPNDGVVDPDG-RIWFGDMGYFDLGKSEERPTGSLYRVDPDGGV 154 (307)
T ss_pred ccEEEeccCCceeEEeccccC----------CCCcCCCCceeEcCCC-CEEEeCCCccccCccccCCcceEEEEcCCCCE
Confidence 445555554444 55543211 1345689999999998 99999987 2479999986544
Q ss_pred eEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccCC-cEEEEeCCCCEEEEEeCCC--CeEEEEeccCCCCCCC
Q 001380 807 SRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNG-QIYVADSYNHKIKKLDPAS--NRVSTLAGIGKAGFKD 883 (1089)
Q Consensus 807 ~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G-~lyVaD~~n~~I~~~d~~~--~~v~t~~g~g~~g~~~ 883 (1089)
++.+.+. +..|.||+++||| .+|++|+..++|.+++.+. +.+.. ...+..
T Consensus 155 ~~l~~~~----------------------~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~-----~~~~~~ 207 (307)
T COG3386 155 VRLLDDD----------------------LTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGG-----RRGFVD 207 (307)
T ss_pred EEeecCc----------------------EEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCC-----cceEEE
Confidence 4444321 5679999999999 7999999999999997642 11100 000000
Q ss_pred CcccccccCCCceEEEccCCcEEEEECCC-CEEEEEeCCCCCceEEEEee
Q 001380 884 GAALAAQLSEPAGIIEAQNGNLFIADTNN-NIIRYLDLNKEEPELQTLEL 932 (1089)
Q Consensus 884 g~~~~~~l~~P~gi~vd~~G~lyVad~~n-~~I~~~~~~~~~~~~~~l~~ 932 (1089)
. ...=..|.|+|+|.+|+||++-..+ .+|.+++++++ .+..+.+
T Consensus 208 ~---~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pdG~--l~~~i~l 252 (307)
T COG3386 208 F---DEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPDGK--LLGEIKL 252 (307)
T ss_pred c---cCCCCCCCceEEeCCCCEEEecccCCceEEEECCCCc--EEEEEEC
Confidence 0 0011459999999999999654444 59999999976 6666664
No 152
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.41 E-value=5.7e-13 Score=122.77 Aligned_cols=86 Identities=13% Similarity=0.208 Sum_probs=71.9
Q ss_pred cccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHH
Q 001380 449 RDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLW 528 (1089)
Q Consensus 449 ~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~ 528 (1089)
++++||++||+|||+||++|+.++|.|.++++++++ +.++.|.. + +....++
T Consensus 14 ~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~--~~~~~vd~-----~---------------------~~~~~l~ 65 (100)
T cd02999 14 AFNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ--IRHLAIEE-----S---------------------SIKPSLL 65 (100)
T ss_pred HhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc--CceEEEEC-----C---------------------CCCHHHH
Confidence 578999999999999999999999999999999974 67777732 1 1345789
Q ss_pred HHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHH
Q 001380 529 RELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDL 564 (1089)
Q Consensus 529 ~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~ 564 (1089)
++|+|.++||+++++ +| .+.++.|..+.+.+.++
T Consensus 66 ~~~~V~~~PT~~lf~-~g-~~~~~~G~~~~~~l~~f 99 (100)
T cd02999 66 SRYGVVGFPTILLFN-ST-PRVRYNGTRTLDSLAAF 99 (100)
T ss_pred HhcCCeecCEEEEEc-CC-ceeEecCCCCHHHHHhh
Confidence 999999999999996 55 67789998888777665
No 153
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=99.41 E-value=7.8e-13 Score=138.94 Aligned_cols=211 Identities=17% Similarity=0.229 Sum_probs=129.7
Q ss_pred CCCCceEEEEecCCcccCCchHHHH--HHHHHHHHcCCCCCHHhHhhhcCCCHHHHHHHHHhhcCCCCCCHHHHH--HHH
Q 001380 75 KWGKVSAVLFDMDGVLCNSEEPSRR--AAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVKGFDSEAAK--KRF 150 (1089)
Q Consensus 75 ~~~~~k~ViFD~DGTL~d~~~~~~~--a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 150 (1089)
.+..++.|+||+|||||.....+.- .+.+.++.+|..+ -..++....+.+++.+.+... |+.....++.. ...
T Consensus 18 ~l~~~DtfifDcDGVlW~g~~~ipGs~e~l~~L~~~gK~i--~fvTNNStksr~~y~kK~~~l-G~~~v~e~~i~ssa~~ 94 (306)
T KOG2882|consen 18 LLDSFDTFIFDCDGVLWLGEKPIPGSPEALNLLKSLGKQI--IFVTNNSTKSREQYMKKFAKL-GFNSVKEENIFSSAYA 94 (306)
T ss_pred HHhhcCEEEEcCCcceeecCCCCCChHHHHHHHHHcCCcE--EEEeCCCcchHHHHHHHHHHh-CccccCcccccChHHH
Confidence 4567899999999999987765443 3445566666432 234555666666666655443 32211111111 111
Q ss_pred HHHHHHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHh--HHHHHHHCCCCCCCccE-----------------
Q 001380 151 FEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIK--VDANLAAAGLPVSMFDA----------------- 211 (1089)
Q Consensus 151 ~~~~~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~--~~~~l~~~gl~~~~fd~----------------- 211 (1089)
...|..............|...+.+.|++.|+..+......... ........+++ .-+.+
T Consensus 95 ~a~ylk~~~~~~k~Vyvig~~gi~~eL~~aG~~~~g~~~~~~~~~~~~~~~~~~~~d-~~VgAVvvg~D~hfsy~KL~kA 173 (306)
T KOG2882|consen 95 IADYLKKRKPFGKKVYVIGEEGIREELDEAGFEYFGGGPDGKDTDGAKSFVLSIGLD-PDVGAVVVGYDEHFSYPKLMKA 173 (306)
T ss_pred HHHHHHHhCcCCCeEEEecchhhhHHHHHcCceeecCCCCcccccccccchhhcCCC-CCCCEEEEecccccCHHHHHHH
Confidence 12233222223234677888999999999987655444321111 11111112221 11111
Q ss_pred -----------EEEc-----------------------------CCccCCCCCHHHHHHHHHHcCCCCCcEEEEcCCh-h
Q 001380 212 -----------IVSA-----------------------------DAFENLKPAPDIFLSASKILNVPTSECIVIEDAL-A 250 (1089)
Q Consensus 212 -----------i~~~-----------------------------~~~~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~-~ 250 (1089)
+.+. +....+||++.|+..++++++++|++++||||++ +
T Consensus 174 ~~yLqnP~clflatn~D~~~p~~~~~~ipG~G~~v~av~~~t~R~P~v~GKP~~~m~~~l~~~~~i~psRt~mvGDRL~T 253 (306)
T KOG2882|consen 174 LNYLQNPGCLFLATNRDATTPPTPGVEIPGAGSFVAAVKFATGRQPIVLGKPSTFMFEYLLEKFNIDPSRTCMVGDRLDT 253 (306)
T ss_pred HHHhCCCCcEEEeccCccccCCCCCeeccCCccHHHHHHHHhcCCCeecCCCCHHHHHHHHHHcCCCcceEEEEcccchh
Confidence 1111 1222489999999999999999999999999999 9
Q ss_pred hHHHHHHcCCeEEEEcCCC-CHHHHhhc------CCcEEecCcccC
Q 001380 251 GVQAAKAAQMRCIAVTTTL-SEERLKEA------SPSLIRKEIGSV 289 (1089)
Q Consensus 251 Di~aA~~aG~~~i~V~~g~-~~~~l~~~------~~d~vi~dl~el 289 (1089)
||..+++.|+.+++|.+|+ +.++.+.. .|||+++.+.++
T Consensus 254 DIlFG~~~G~~TLLvltGv~~led~~~~~~~~~~~PDyy~~~l~d~ 299 (306)
T KOG2882|consen 254 DILFGKNCGFKTLLVLSGVTTLEDILEAQGDNKMVPDYYADSLGDL 299 (306)
T ss_pred hhhHhhccCcceEEEecCcCcHHHHHhcccccCCCCchHHhhHHHH
Confidence 9999999999999999998 55555443 367776666555
No 154
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.40 E-value=1.3e-12 Score=121.35 Aligned_cols=87 Identities=21% Similarity=0.295 Sum_probs=68.8
Q ss_pred ccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHH
Q 001380 450 DLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWR 529 (1089)
Q Consensus 450 ~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~ 529 (1089)
+.+||+|||+|||+||++|+.++|.|++++++++ ++.++.|+.+ ++. ...++++
T Consensus 12 ~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~--~v~~~~vd~d-----~~~-------------------~~~~l~~ 65 (103)
T cd02985 12 KAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCN--DVVFLLVNGD-----END-------------------STMELCR 65 (103)
T ss_pred HcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC--CCEEEEEECC-----CCh-------------------HHHHHHH
Confidence 3469999999999999999999999999999993 5788888541 110 0136888
Q ss_pred HhCCCceeEEEEECCCCcEEEEecCCCchhhHHHH
Q 001380 530 ELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDL 564 (1089)
Q Consensus 530 ~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~ 564 (1089)
+|+|.++||++++ ++|+++.++.|.. .+.+.+.
T Consensus 66 ~~~V~~~Pt~~~~-~~G~~v~~~~G~~-~~~l~~~ 98 (103)
T cd02985 66 REKIIEVPHFLFY-KDGEKIHEEEGIG-PDELIGD 98 (103)
T ss_pred HcCCCcCCEEEEE-eCCeEEEEEeCCC-HHHHHHH
Confidence 9999999998877 8999999999965 4444433
No 155
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.38 E-value=1.3e-12 Score=120.91 Aligned_cols=80 Identities=19% Similarity=0.160 Sum_probs=70.4
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
.+++|||+|||+||+||+.+.|.|.+++++|++. +.++-|.+ |...++++.|
T Consensus 13 ~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~-v~f~kVDv---------------------------D~~~~la~~~ 64 (114)
T cd02954 13 EEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNF-AVIYLVDI---------------------------DEVPDFNKMY 64 (114)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHccCc-eEEEEEEC---------------------------CCCHHHHHHc
Confidence 4689999999999999999999999999999865 67777754 6678999999
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCchhh
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGHRKD 560 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~~~~ 560 (1089)
+|.++||++++ ++|+.+.+..|..+..+
T Consensus 65 ~V~~iPTf~~f-k~G~~v~~~~G~~~~~~ 92 (114)
T cd02954 65 ELYDPPTVMFF-FRNKHMKIDLGTGNNNK 92 (114)
T ss_pred CCCCCCEEEEE-ECCEEEEEEcCCCCCce
Confidence 99999999999 89999999988765443
No 156
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.37 E-value=1.8e-12 Score=122.23 Aligned_cols=89 Identities=18% Similarity=0.296 Sum_probs=77.9
Q ss_pred cCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHH
Q 001380 451 LKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRE 530 (1089)
Q Consensus 451 ~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~ 530 (1089)
.+|+++||+||++||++|+.+.|.+.++.+++++.++.+..|.+ |.+..++++
T Consensus 22 ~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~---------------------------d~~~~l~~~ 74 (111)
T cd02963 22 SFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNA---------------------------GHERRLARK 74 (111)
T ss_pred cCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEec---------------------------cccHHHHHH
Confidence 47899999999999999999999999999999865688888854 455689999
Q ss_pred hCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHH
Q 001380 531 LGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEA 567 (1089)
Q Consensus 531 ~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~ 567 (1089)
|+|.++|+++++ ++|+++....|..+.+.+.++|++
T Consensus 75 ~~V~~~Pt~~i~-~~g~~~~~~~G~~~~~~l~~~i~~ 110 (111)
T cd02963 75 LGAHSVPAIVGI-INGQVTFYHDSSFTKQHVVDFVRK 110 (111)
T ss_pred cCCccCCEEEEE-ECCEEEEEecCCCCHHHHHHHHhc
Confidence 999999999999 699999999998888888887764
No 157
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=99.37 E-value=1.8e-12 Score=125.29 Aligned_cols=88 Identities=16% Similarity=0.172 Sum_probs=79.3
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCC-ChHhHHHHHHHCC-------CCCCCccEEEEcCCccCCCCCHHHHHHHHHHcC
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSA-DRIKVDANLAAAG-------LPVSMFDAIVSADAFENLKPAPDIFLSASKILN 236 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~-~~~~~~~~l~~~g-------l~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lg 236 (1089)
.++||+.++|+.|+++|++++|+||+ ....+...++..+ +. .+|+.++++++ +|+|++|.++++++|
T Consensus 29 ~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l~~~~~~~~i~~l~-~~f~~~~~~~~----~pkp~~~~~a~~~lg 103 (128)
T TIGR01681 29 VTIKEIRDKLQTLKKNGFLLALASYNDDPHVAYELLKIFEDFGIIFPLA-EYFDPLTIGYW----LPKSPRLVEIALKLN 103 (128)
T ss_pred HHHHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHHHhccccccchhhH-hhhhhhhhcCC----CcHHHHHHHHHHHhc
Confidence 47899999999999999999999999 7888888899888 75 88999888863 589999999999999
Q ss_pred --CCCCcEEEEcCChhhHHHHHH
Q 001380 237 --VPTSECIVIEDALAGVQAAKA 257 (1089)
Q Consensus 237 --v~p~~~v~VGD~~~Di~aA~~ 257 (1089)
+.|++|+||||+..|+...++
T Consensus 104 ~~~~p~~~l~igDs~~n~~~~~~ 126 (128)
T TIGR01681 104 GVLKPKSILFVDDRPDNNEEVDY 126 (128)
T ss_pred CCCCcceEEEECCCHhHHHHHHh
Confidence 999999999999999887654
No 158
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.36 E-value=3.1e-12 Score=117.45 Aligned_cols=85 Identities=25% Similarity=0.458 Sum_probs=75.3
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
+|+++||+||++||++|+.+.|.++++++++++. +.++.|.+ |....++++|
T Consensus 11 ~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~-~~~~~vd~---------------------------~~~~~l~~~~ 62 (96)
T cd02956 11 TQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQ-FVLAKVNC---------------------------DAQPQIAQQF 62 (96)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCc-EEEEEEec---------------------------cCCHHHHHHc
Confidence 5889999999999999999999999999999764 88888854 4566899999
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCchhhHHHHH
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLV 565 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l 565 (1089)
+|.++|++++++ +|+++.++.|..+.+.+.++|
T Consensus 63 ~i~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~l 95 (96)
T cd02956 63 GVQALPTVYLFA-AGQPVDGFQGAQPEEQLRQML 95 (96)
T ss_pred CCCCCCEEEEEe-CCEEeeeecCCCCHHHHHHHh
Confidence 999999999996 999999999988888887765
No 159
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.35 E-value=4.1e-12 Score=117.83 Aligned_cols=86 Identities=19% Similarity=0.323 Sum_probs=72.1
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
.+++++|+|||+||++|+.+.|.|+++++++++..+.++.+.. | +.+++++|
T Consensus 16 ~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~---------------------------d-~~~~~~~~ 67 (102)
T cd02948 16 NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEA---------------------------D-TIDTLKRY 67 (102)
T ss_pred cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeC---------------------------C-CHHHHHHc
Confidence 5899999999999999999999999999999865677777743 3 45688999
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHH
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEA 567 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~ 567 (1089)
+|.++|+++++ ++|+.+.+..|. ..+.+.+.|++
T Consensus 68 ~v~~~Pt~~~~-~~g~~~~~~~G~-~~~~~~~~i~~ 101 (102)
T cd02948 68 RGKCEPTFLFY-KNGELVAVIRGA-NAPLLNKTITE 101 (102)
T ss_pred CCCcCcEEEEE-ECCEEEEEEecC-ChHHHHHHHhh
Confidence 99999998888 799999999885 66666666653
No 160
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=99.35 E-value=2.4e-12 Score=128.86 Aligned_cols=110 Identities=14% Similarity=0.191 Sum_probs=90.3
Q ss_pred HHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCcEEEEcCChhhH
Q 001380 173 LINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDALAGV 252 (1089)
Q Consensus 173 lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di 252 (1089)
+|++|+++|++++|+||.....+...++++|+. .+|+. .||+++++.++++++|+++++|+||||+.+|+
T Consensus 36 ~i~~Lk~~G~~i~IvTn~~~~~~~~~l~~~gi~-~~~~~---------~~~k~~~~~~~~~~~~~~~~~~~~vGDs~~D~ 105 (154)
T TIGR01670 36 GIRCALKSGIEVAIITGRKAKLVEDRCKTLGIT-HLYQG---------QSNKLIAFSDILEKLALAPENVAYIGDDLIDW 105 (154)
T ss_pred HHHHHHHCCCEEEEEECCCCHHHHHHHHHcCCC-EEEec---------ccchHHHHHHHHHHcCCCHHHEEEECCCHHHH
Confidence 688899999999999999999999999999996 66542 37899999999999999999999999999999
Q ss_pred HHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccCC-HHHHHh
Q 001380 253 QAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVS-LNDILT 296 (1089)
Q Consensus 253 ~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~-i~~ll~ 296 (1089)
.+++++|+. +.+.... +.+ ...+++++.+..+-. +..+++
T Consensus 106 ~~~~~ag~~-~~v~~~~--~~~-~~~a~~i~~~~~~~g~~~~~~~ 146 (154)
T TIGR01670 106 PVMEKVGLS-VAVADAH--PLL-IPRADYVTRIAGGRGAVREVCE 146 (154)
T ss_pred HHHHHCCCe-EecCCcC--HHH-HHhCCEEecCCCCCcHHHHHHH
Confidence 999999996 6666542 333 446888887775432 344443
No 161
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=99.34 E-value=3.8e-12 Score=128.21 Aligned_cols=102 Identities=14% Similarity=0.180 Sum_probs=85.0
Q ss_pred HHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCcEEEEcCChhhH
Q 001380 173 LINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDALAGV 252 (1089)
Q Consensus 173 lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di 252 (1089)
.+..|+++|++++|+||.....++..++.+++. .+|+. .||+|+.|+.+++++++++++|++|||+.+|+
T Consensus 42 ~~~~L~~~Gi~laIiT~k~~~~~~~~l~~lgi~-~~f~~---------~kpkp~~~~~~~~~l~~~~~ev~~iGD~~nDi 111 (169)
T TIGR02726 42 GVIVLQLCGIDVAIITSKKSGAVRHRAEELKIK-RFHEG---------IKKKTEPYAQMLEEMNISDAEVCYVGDDLVDL 111 (169)
T ss_pred HHHHHHHCCCEEEEEECCCcHHHHHHHHHCCCc-EEEec---------CCCCHHHHHHHHHHcCcCHHHEEEECCCHHHH
Confidence 456688999999999999999999999999996 77763 28999999999999999999999999999999
Q ss_pred HHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCccc
Q 001380 253 QAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGS 288 (1089)
Q Consensus 253 ~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~e 288 (1089)
.+++.+|+..+.- ...+.++. .+++|..+-.+
T Consensus 112 ~~~~~ag~~~am~---nA~~~lk~-~A~~I~~~~~~ 143 (169)
T TIGR02726 112 SMMKRVGLAVAVG---DAVADVKE-AAAYVTTARGG 143 (169)
T ss_pred HHHHHCCCeEECc---CchHHHHH-hCCEEcCCCCC
Confidence 9999999664443 34555554 57888764433
No 162
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=99.34 E-value=6.2e-12 Score=129.77 Aligned_cols=93 Identities=18% Similarity=0.204 Sum_probs=78.1
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCC------------ccCCCCCHHHHHHHH
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADA------------FENLKPAPDIFLSAS 232 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~------------~~~~KP~~~~~~~~l 232 (1089)
.++||+.++++.++++|++++|+|++....++.+++++|+. .++...+..++ ...+..|...+++.+
T Consensus 73 ~~~~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~g~~-~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~l~~~~ 151 (177)
T TIGR01488 73 ALRPGARELISWLKERGIDTVIVSGGFDFFVEPVAEKLGID-DVFANRLEFDDNGLLTGPIEGQVNPEGECKGKVLKELL 151 (177)
T ss_pred CcCcCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCc-hheeeeEEECCCCEEeCccCCcccCCcchHHHHHHHHH
Confidence 57899999999999999999999999999999999999996 66654433321 123455678888989
Q ss_pred HHcCCCCCcEEEEcCChhhHHHHHHc
Q 001380 233 KILNVPTSECIVIEDALAGVQAAKAA 258 (1089)
Q Consensus 233 ~~lgv~p~~~v~VGD~~~Di~aA~~a 258 (1089)
++++++++++++|||+.+|+.+++.+
T Consensus 152 ~~~~~~~~~~~~iGDs~~D~~~~~~a 177 (177)
T TIGR01488 152 EESKITLKKIIAVGDSVNDLPMLKLA 177 (177)
T ss_pred HHhCCCHHHEEEEeCCHHHHHHHhcC
Confidence 99999999999999999999998764
No 163
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.34 E-value=3.8e-12 Score=143.15 Aligned_cols=103 Identities=15% Similarity=0.150 Sum_probs=96.5
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCC-CccEEEEcC-------CccCCCCCHHHHHHHHHHcC
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVS-MFDAIVSAD-------AFENLKPAPDIFLSASKILN 236 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~-~fd~i~~~~-------~~~~~KP~~~~~~~~l~~lg 236 (1089)
.++||+.++|+.|+++|++++|+||......+..++++++. . +|+.+++.+ +....||+|+++..++++++
T Consensus 187 ~~~~~~~~~l~~l~~~g~~i~i~T~r~~~~~~~~l~~l~~~-~~~f~~i~~~~~~~~~~~~~~~~kp~p~~~~~~l~~~~ 265 (300)
T PHA02530 187 KPNPMVVELVKMYKAAGYEIIVVSGRDGVCEEDTVEWLRQT-DIWFDDLIGRPPDMHFQREQGDKRPDDVVKEEIFWEKI 265 (300)
T ss_pred CCChhHHHHHHHHHhCCCEEEEEeCCChhhHHHHHHHHHHc-CCchhhhhCCcchhhhcccCCCCCCcHHHHHHHHHHHh
Confidence 68999999999999999999999999999999999999996 5 899999988 45578999999999999998
Q ss_pred C-CCCcEEEEcCChhhHHHHHHcCCeEEEEcCC
Q 001380 237 V-PTSECIVIEDALAGVQAAKAAQMRCIAVTTT 268 (1089)
Q Consensus 237 v-~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g 268 (1089)
. .+++|+||||+.+|+++|+++|+.+++|.+|
T Consensus 266 ~~~~~~~~~vgD~~~d~~~a~~~Gi~~i~v~~g 298 (300)
T PHA02530 266 APKYDVLLAVDDRDQVVDMWRRIGLECWQVAPG 298 (300)
T ss_pred ccCceEEEEEcCcHHHHHHHHHhCCeEEEecCC
Confidence 8 6799999999999999999999999999887
No 164
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=99.33 E-value=4.9e-11 Score=136.89 Aligned_cols=230 Identities=15% Similarity=0.221 Sum_probs=179.3
Q ss_pred CCeEEEEeCCCCEEEEEeCCCCEEEE------EecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEEEEE
Q 001380 612 NNRLFISDSNHNRIVVTDLDGNFIVQ------IGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREID 685 (1089)
Q Consensus 612 ~g~L~vsd~~~~~I~~~~~~g~~~~~------i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~~d 685 (1089)
+..|+++.. ..|..+.++|..+.. +-.+ -.-|.||++|-..+.+||+|...+.|++-.
T Consensus 990 gt~LL~aqg--~~I~~lplng~~~~K~~ak~~l~~p--------------~~IiVGidfDC~e~mvyWtDv~g~SI~ras 1053 (1289)
T KOG1214|consen 990 GTFLLYAQG--QQIGYLPLNGTRLQKDAAKTLLSLP--------------GSIIVGIDFDCRERMVYWTDVAGRSISRAS 1053 (1289)
T ss_pred cceEEEecc--ceEEEeecCcchhchhhhhceEecc--------------cceeeeeecccccceEEEeecCCCcccccc
Confidence 456666664 567777666653321 1111 024789999988888999999999999999
Q ss_pred CCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCccccCCCC
Q 001380 686 FVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGS 765 (1089)
Q Consensus 686 ~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~~~~g~ 765 (1089)
+.++.-+++...+ |.+|-|||+|..+.++|++|..+.+|-.-.+++...+.+..
T Consensus 1054 L~G~Ep~ti~n~~----------------L~SPEGiAVDh~~Rn~ywtDS~lD~IevA~LdG~~rkvLf~---------- 1107 (1289)
T KOG1214|consen 1054 LEGAEPETIVNSG----------------LISPEGIAVDHIRRNMYWTDSVLDKIEVALLDGSERKVLFY---------- 1107 (1289)
T ss_pred ccCCCCceeeccc----------------CCCccceeeeeccceeeeeccccchhheeecCCceeeEEEe----------
Confidence 9998888887433 78999999999999999999999998776666655555542
Q ss_pred CCCCccccCCceEEEcCCCCEEEEEeCC--CCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEE
Q 001380 766 SSLNTSFAQPSGISLSPDFMEIYVADSE--SSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVY 843 (1089)
Q Consensus 766 ~~~~~~~~~P~glav~~~g~~lyvad~~--~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva 843 (1089)
..+.+|.+|++|+-+++||++|+. +-.|-+.++++...+++...+ +.-|.|++
T Consensus 1108 ----tdLVNPR~iv~D~~rgnLYwtDWnRenPkIets~mDG~NrRilin~D---------------------igLPNGLt 1162 (1289)
T KOG1214|consen 1108 ----TDLVNPRAIVVDPIRGNLYWTDWNRENPKIETSSMDGENRRILINTD---------------------IGLPNGLT 1162 (1289)
T ss_pred ----ecccCcceEEeecccCceeeccccccCCcceeeccCCccceEEeecc---------------------cCCCCCce
Confidence 457799999999998899999975 557888888877666665433 45699999
Q ss_pred EccCC-cEEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEEEEeCCC
Q 001380 844 CAKNG-QIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLDLNK 922 (1089)
Q Consensus 844 ~~~~G-~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~~~~~ 922 (1089)
+|+.. .|-|+|.+++|+.-+.+++---.++.. .|..|-+|.-+.+ ++|.+|+..++|..+++.+
T Consensus 1163 fdpfs~~LCWvDAGt~rleC~~p~g~gRR~i~~--------------~LqYPF~itsy~~-~fY~TDWk~n~vvsv~~~~ 1227 (1289)
T KOG1214|consen 1163 FDPFSKLLCWVDAGTKRLECTLPDGTGRRVIQN--------------NLQYPFSITSYAD-HFYHTDWKRNGVVSVNKHS 1227 (1289)
T ss_pred eCcccceeeEEecCCcceeEecCCCCcchhhhh--------------cccCceeeeeccc-cceeeccccCceEEeeccc
Confidence 99976 588999999999988886543333321 5889999998865 5999999999999999887
Q ss_pred C
Q 001380 923 E 923 (1089)
Q Consensus 923 ~ 923 (1089)
+
T Consensus 1228 ~ 1228 (1289)
T KOG1214|consen 1228 G 1228 (1289)
T ss_pred c
Confidence 6
No 165
>PHA02278 thioredoxin-like protein
Probab=99.32 E-value=6.8e-12 Score=115.47 Aligned_cols=88 Identities=15% Similarity=0.179 Sum_probs=69.1
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
+++++||+|||+||+||+.+.|.+.++++++... +.++-|.+++.. + | ..++++.|
T Consensus 13 ~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~-~~~~~vdvd~~~--------------------~--d-~~~l~~~~ 68 (103)
T PHA02278 13 QKKDVIVMITQDNCGKCEILKSVIPMFQESGDIK-KPILTLNLDAED--------------------V--D-REKAVKLF 68 (103)
T ss_pred CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCC-ceEEEEECCccc--------------------c--c-cHHHHHHC
Confidence 5789999999999999999999999998875432 445555431000 0 1 25799999
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCchhhHHHH
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDL 564 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~ 564 (1089)
+|.++||++++ ++|+.+.+..|....+.+.++
T Consensus 69 ~I~~iPT~i~f-k~G~~v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 69 DIMSTPVLIGY-KDGQLVKKYEDQVTPMQLQEL 100 (103)
T ss_pred CCccccEEEEE-ECCEEEEEEeCCCCHHHHHhh
Confidence 99999999999 799999999998877776554
No 166
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=99.31 E-value=2.1e-12 Score=137.73 Aligned_cols=90 Identities=33% Similarity=0.407 Sum_probs=80.6
Q ss_pred CCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCcEE
Q 001380 164 GIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECI 243 (1089)
Q Consensus 164 ~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~v 243 (1089)
.+++|++.++|+.|+++|++++++|+.+...+..+.+.+|+. +.++.++.. +||.+.+|.++++++++++++|+
T Consensus 126 d~~~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~lgi~----~~~v~a~~~--~kP~~k~~~~~i~~l~~~~~~v~ 199 (215)
T PF00702_consen 126 DPLRPGAKEALQELKEAGIKVAILTGDNESTASAIAKQLGIF----DSIVFARVI--GKPEPKIFLRIIKELQVKPGEVA 199 (215)
T ss_dssp EEBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTSC----SEEEEESHE--TTTHHHHHHHHHHHHTCTGGGEE
T ss_pred CcchhhhhhhhhhhhccCcceeeeeccccccccccccccccc----ccccccccc--ccccchhHHHHHHHHhcCCCEEE
Confidence 367899999999999999999999999999999999999994 344444322 79999999999999999999999
Q ss_pred EEcCChhhHHHHHHcC
Q 001380 244 VIEDALAGVQAAKAAQ 259 (1089)
Q Consensus 244 ~VGD~~~Di~aA~~aG 259 (1089)
||||+.||+.|+++||
T Consensus 200 ~vGDg~nD~~al~~Ag 215 (215)
T PF00702_consen 200 MVGDGVNDAPALKAAG 215 (215)
T ss_dssp EEESSGGHHHHHHHSS
T ss_pred EEccCHHHHHHHHhCc
Confidence 9999999999999987
No 167
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.30 E-value=1e-11 Score=120.06 Aligned_cols=105 Identities=23% Similarity=0.244 Sum_probs=81.7
Q ss_pred CC-CEEEEEEecCCCcchhhhhhhHH---HHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhH
Q 001380 452 KG-KVVVLDFWTYCCINCMHVLPDLE---FLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNL 527 (1089)
Q Consensus 452 ~g-k~vll~Fwa~wC~~C~~~~p~l~---~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l 527 (1089)
.| |++||+||++||++|+.+.|.+. ++.+.+++ ++.++.|+.+ ++.. ... |........++
T Consensus 12 ~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~i~~d-----~~~~-~~~--------~~~~~~~~~~l 76 (125)
T cd02951 12 DGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA-HFVVVYINID-----GDKE-VTD--------FDGEALSEKEL 76 (125)
T ss_pred cCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh-heEEEEEEcc-----CCce-eec--------cCCCCccHHHH
Confidence 57 89999999999999999998875 56666654 5888888652 1111 111 11112346789
Q ss_pred HHHhCCCceeEEEEECCC-CcEEEEecCCCchhhHHHHHHHHHHH
Q 001380 528 WRELGVNSWPTFAVVGPN-GKLLAQLAGEGHRKDLDDLVEAALLF 571 (1089)
Q Consensus 528 ~~~~~v~~~Pt~~lid~~-G~i~~~~~G~~~~~~l~~~l~~~l~~ 571 (1089)
+++|+|.++|+++++|++ |+++.++.|....+.+.++|+.++++
T Consensus 77 ~~~~~v~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~~ 121 (125)
T cd02951 77 ARKYRVRFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQEK 121 (125)
T ss_pred HHHcCCccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHhh
Confidence 999999999999999999 89999999999999999999888765
No 168
>PRK09381 trxA thioredoxin; Provisional
Probab=99.29 E-value=1.4e-11 Score=115.97 Aligned_cols=89 Identities=24% Similarity=0.485 Sum_probs=77.6
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
.+++++|+||++||++|+.+.|.|+++++++.+. +.++.+++ |....+++.|
T Consensus 20 ~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~-~~~~~vd~---------------------------~~~~~~~~~~ 71 (109)
T PRK09381 20 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK-LTVAKLNI---------------------------DQNPGTAPKY 71 (109)
T ss_pred CCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCC-cEEEEEEC---------------------------CCChhHHHhC
Confidence 4789999999999999999999999999999864 88888854 3455688899
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHH
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAAL 569 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l 569 (1089)
+|.++|+++++ ++|+++.++.|....+.+..+|+..+
T Consensus 72 ~v~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 72 GIRGIPTLLLF-KNGEVAATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred CCCcCCEEEEE-eCCeEEEEecCCCCHHHHHHHHHHhc
Confidence 99999999999 79999999999988888888887654
No 169
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=99.28 E-value=3.9e-11 Score=126.72 Aligned_cols=98 Identities=12% Similarity=0.131 Sum_probs=82.8
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccE-EEEcCC----------ccCCCCCHHHHHHHHH
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDA-IVSADA----------FENLKPAPDIFLSASK 233 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~-i~~~~~----------~~~~KP~~~~~~~~l~ 233 (1089)
.++||+.++++.++++|++++|+|++....++.+++++|++ .+|.. +...++ ...+++|...+++.++
T Consensus 87 ~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~lg~~-~~~~~~l~~~~~g~~~g~~~~~~~~g~~K~~~l~~~~~ 165 (202)
T TIGR01490 87 ILYPEARDLIRWHKAEGHTIVLVSASLTILVKPLARILGID-NAIGTRLEESEDGIYTGNIDGNNCKGEGKVHALAELLA 165 (202)
T ss_pred hccHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcCCc-ceEecceEEcCCCEEeCCccCCCCCChHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999996 66654 222111 1235677788999999
Q ss_pred HcCCCCCcEEEEcCChhhHHHHHHcCCeEE
Q 001380 234 ILNVPTSECIVIEDALAGVQAAKAAQMRCI 263 (1089)
Q Consensus 234 ~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i 263 (1089)
+.++++++|++|||+.+|+.+++.+|..++
T Consensus 166 ~~~~~~~~~~~~gDs~~D~~~~~~a~~~~~ 195 (202)
T TIGR01490 166 EEQIDLKDSYAYGDSISDLPLLSLVGHPYV 195 (202)
T ss_pred HcCCCHHHcEeeeCCcccHHHHHhCCCcEE
Confidence 999999999999999999999999996654
No 170
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.28 E-value=2.7e-11 Score=116.58 Aligned_cols=104 Identities=16% Similarity=0.109 Sum_probs=84.0
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
.+|+|||+|||+||+||+.+.|.|.++++++++. +.|+-|.+ |...+++..|
T Consensus 22 ~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~-~~~~kVDV---------------------------De~~dla~~y 73 (142)
T PLN00410 22 EERLVVIRFGHDWDETCMQMDEVLASVAETIKNF-AVIYLVDI---------------------------TEVPDFNTMY 73 (142)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCc-eEEEEEEC---------------------------CCCHHHHHHc
Confidence 5689999999999999999999999999999865 66777755 6778999999
Q ss_pred CCCceeEEE-EECCCCc-EEEEecC--------CCchhhHHHHHHHHHHHhcccccccCCCCC
Q 001380 532 GVNSWPTFA-VVGPNGK-LLAQLAG--------EGHRKDLDDLVEAALLFYGKKKLLDNTPLP 584 (1089)
Q Consensus 532 ~v~~~Pt~~-lid~~G~-i~~~~~G--------~~~~~~l~~~l~~~l~~~~~~~~l~~~~~~ 584 (1089)
+|++.|+++ ++ ++|+ .+.+..| ....+++.+.++.+++...+...|...|.+
T Consensus 74 ~I~~~~t~~~ff-k~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~~a~~g~~~~~~~~~ 135 (142)
T PLN00410 74 ELYDPCTVMFFF-RNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARKGRGLVISPKD 135 (142)
T ss_pred CccCCCcEEEEE-ECCeEEEEEecccccccccccCCHHHHHHHHHHHHHHHhcCCeEEECCCc
Confidence 999887777 56 8888 7888888 467788888888888776654444444443
No 171
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=99.27 E-value=1.2e-11 Score=127.60 Aligned_cols=98 Identities=14% Similarity=0.205 Sum_probs=83.0
Q ss_pred HHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCcEEEEcCChhhH
Q 001380 173 LINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDALAGV 252 (1089)
Q Consensus 173 lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di 252 (1089)
.++.|+++|++++|+||.....++..++++|+. .+|+ ..+++++.+.++++++|+++++++||||+.+|+
T Consensus 56 ~i~~L~~~Gi~v~I~T~~~~~~v~~~l~~lgl~-~~f~---------g~~~k~~~l~~~~~~~gl~~~ev~~VGDs~~D~ 125 (183)
T PRK09484 56 GIRCLLTSGIEVAIITGRKSKLVEDRMTTLGIT-HLYQ---------GQSNKLIAFSDLLEKLAIAPEQVAYIGDDLIDW 125 (183)
T ss_pred HHHHHHHCCCEEEEEeCCCcHHHHHHHHHcCCc-eeec---------CCCcHHHHHHHHHHHhCCCHHHEEEECCCHHHH
Confidence 566688899999999999999999999999996 6654 136678999999999999999999999999999
Q ss_pred HHHHHcCCeEEEEcCCCCHHHHhhcCCcEEec
Q 001380 253 QAAKAAQMRCIAVTTTLSEERLKEASPSLIRK 284 (1089)
Q Consensus 253 ~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~ 284 (1089)
.+++++|+.+ .+. ....+....+++++.
T Consensus 126 ~~a~~aG~~~-~v~---~~~~~~~~~a~~v~~ 153 (183)
T PRK09484 126 PVMEKVGLSV-AVA---DAHPLLLPRADYVTR 153 (183)
T ss_pred HHHHHCCCeE-ecC---ChhHHHHHhCCEEec
Confidence 9999999984 353 344555567899987
No 172
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=99.27 E-value=3.3e-11 Score=120.41 Aligned_cols=122 Identities=24% Similarity=0.309 Sum_probs=98.7
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcC---------------CChHhHHHHHHHCCCCCCCccEEEEcC-----CccCCCCC
Q 001380 165 IGFPGALELINQCKSKGLKVAVASS---------------ADRIKVDANLAAAGLPVSMFDAIVSAD-----AFENLKPA 224 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn---------------~~~~~~~~~l~~~gl~~~~fd~i~~~~-----~~~~~KP~ 224 (1089)
.+.||+.+++..|++.|++++|+|| .....+...++..|+. ||.|+.+- ...+.||+
T Consensus 31 ~~~~g~i~al~~l~~~gy~lVvvTNQsGi~rgyf~~~~f~~~~~~m~~~l~~~gv~---id~i~~Cph~p~~~c~cRKP~ 107 (181)
T COG0241 31 QFIPGVIPALLKLQRAGYKLVVVTNQSGIGRGYFTEADFDKLHNKMLKILASQGVK---IDGILYCPHHPEDNCDCRKPK 107 (181)
T ss_pred ccCccHHHHHHHHHhCCCeEEEEECCCCccccCccHHHHHHHHHHHHHHHHHcCCc---cceEEECCCCCCCCCcccCCC
Confidence 6789999999999999999999999 1223356667777876 88877652 35679999
Q ss_pred HHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccC
Q 001380 225 PDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSV 289 (1089)
Q Consensus 225 ~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el 289 (1089)
+.|++.+++++++++++.+||||+.+|+++|.++|+..+.+.++.......+...+++..++.++
T Consensus 108 ~gm~~~~~~~~~iD~~~s~~VGD~~~Dlq~a~n~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (181)
T COG0241 108 PGMLLSALKEYNIDLSRSYVVGDRLTDLQAAENAGIKGVLVLTGIGVTTDGAGRAKWVFDSLAEF 172 (181)
T ss_pred hHHHHHHHHHhCCCccceEEecCcHHHHHHHHHCCCCceEEEcCcccccccccccccccccHHHH
Confidence 99999999999999999999999999999999999999999887533333333456666666665
No 173
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.26 E-value=1.6e-11 Score=133.66 Aligned_cols=107 Identities=20% Similarity=0.239 Sum_probs=84.6
Q ss_pred eeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecC
Q 001380 444 PLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDG 523 (1089)
Q Consensus 444 ~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~ 523 (1089)
...+ ++++||++||+||++||++|+.++|.|++++++|+ +.|++|+++. ... -.||.. +.
T Consensus 158 ~~~l-~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg---~~Vi~VsvD~---~~~------------~~fp~~-~~ 217 (271)
T TIGR02740 158 DRVM-KDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG---IEVLPVSVDG---GPL------------PGFPNA-RP 217 (271)
T ss_pred HHHH-HHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHcC---cEEEEEeCCC---Ccc------------ccCCcc-cC
Confidence 3556 78999999999999999999999999999999984 8889997632 111 015555 44
Q ss_pred ChhHHHHhCCCceeEEEEECCC-CcEEEEecCCCchhhHHHHHHHHHH
Q 001380 524 DMNLWRELGVNSWPTFAVVGPN-GKLLAQLAGEGHRKDLDDLVEAALL 570 (1089)
Q Consensus 524 ~~~l~~~~~v~~~Pt~~lid~~-G~i~~~~~G~~~~~~l~~~l~~~l~ 570 (1089)
+..+++.|||.++|++||+|++ |++.....|..+.++|.+.|..+..
T Consensus 218 d~~la~~~gV~~vPtl~Lv~~~~~~v~~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 218 DAGQAQQLKIRTVPAVFLADPDPNQFTPIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred CHHHHHHcCCCcCCeEEEEECCCCEEEEEEeCCCCHHHHHHHHHHHhc
Confidence 5678999999999999999995 5555567798888888887776544
No 174
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.25 E-value=3.6e-11 Score=112.63 Aligned_cols=84 Identities=8% Similarity=0.092 Sum_probs=72.8
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHH-HH
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLW-RE 530 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~-~~ 530 (1089)
.++++||+|||+||++|+.+.|.+.++++++++. +.++.|.+ |.+..++ ++
T Consensus 28 ~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~-v~~~~Vd~---------------------------d~~~~l~~~~ 79 (113)
T cd03006 28 DAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQ-VLFVAINC---------------------------WWPQGKCRKQ 79 (113)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCC-eEEEEEEC---------------------------CCChHHHHHh
Confidence 5689999999999999999999999999999864 88888865 4566787 58
Q ss_pred hCCCceeEEEEECCCCcEEEEecCCCchhhHHHH
Q 001380 531 LGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDL 564 (1089)
Q Consensus 531 ~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~ 564 (1089)
|+|.++||+.++ ++|+...++.|....+.+..+
T Consensus 80 ~~I~~~PTl~lf-~~g~~~~~y~G~~~~~~i~~~ 112 (113)
T cd03006 80 KHFFYFPVIHLY-YRSRGPIEYKGPMRAPYMEKF 112 (113)
T ss_pred cCCcccCEEEEE-ECCccceEEeCCCCHHHHHhh
Confidence 999999999999 889988889998888877654
No 175
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=99.25 E-value=8.6e-12 Score=135.29 Aligned_cols=99 Identities=17% Similarity=0.180 Sum_probs=84.8
Q ss_pred CccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEE--EEcCCccCCCCCHHHHHHHHHHcCCC-CCcEE
Q 001380 167 FPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAI--VSADAFENLKPAPDIFLSASKILNVP-TSECI 243 (1089)
Q Consensus 167 ~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i--~~~~~~~~~KP~~~~~~~~l~~lgv~-p~~~v 243 (1089)
++++.++++.|+++|+++ |+||.+.......+..++.. .++..+ .+.+....+||++++|+.++++++.. +++|+
T Consensus 140 ~~~~~~~l~~l~~~g~~~-i~tN~d~~~~~~~~~~~~~g-~~~~~i~~~g~~~~~~gKP~~~~~~~~~~~~~~~~~~~~~ 217 (242)
T TIGR01459 140 LDEFDELFAPIVARKIPN-ICANPDRGINQHGIYRYGAG-YYAELIKQLGGKVIYSGKPYPAIFHKALKECSNIPKNRML 217 (242)
T ss_pred HHHHHHHHHHHHhCCCcE-EEECCCEeccCCCceEeccc-HHHHHHHHhCCcEecCCCCCHHHHHHHHHHcCCCCcccEE
Confidence 689999999999999997 88998887776667777774 677655 56666668999999999999999975 57999
Q ss_pred EEcCCh-hhHHHHHHcCCeEEEEcC
Q 001380 244 VIEDAL-AGVQAAKAAQMRCIAVTT 267 (1089)
Q Consensus 244 ~VGD~~-~Di~aA~~aG~~~i~V~~ 267 (1089)
||||++ +||.+|+++||++++|.+
T Consensus 218 ~vGD~~~~Di~~a~~~G~~~i~v~t 242 (242)
T TIGR01459 218 MVGDSFYTDILGANRLGIDTALVLT 242 (242)
T ss_pred EECCCcHHHHHHHHHCCCeEEEEeC
Confidence 999995 999999999999999964
No 176
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=99.24 E-value=1.4e-11 Score=106.97 Aligned_cols=70 Identities=33% Similarity=0.488 Sum_probs=63.1
Q ss_pred CCCCCHHHHHHHHHHcCCCCCcEEEEcCC-hhhHHHHHHcCCeEEEEcCCC-CHHHHh--hcCCcEEecCcccC
Q 001380 220 NLKPAPDIFLSASKILNVPTSECIVIEDA-LAGVQAAKAAQMRCIAVTTTL-SEERLK--EASPSLIRKEIGSV 289 (1089)
Q Consensus 220 ~~KP~~~~~~~~l~~lgv~p~~~v~VGD~-~~Di~aA~~aG~~~i~V~~g~-~~~~l~--~~~~d~vi~dl~el 289 (1089)
.+||+|.+|..+++++++++++++||||+ .+||++|+++|+.+++|.+|. ..+++. ..+|++|++++.|+
T Consensus 2 ~gKP~p~~~~~a~~~~~~~~~~~~~VGD~~~~Di~~a~~~G~~~ilV~tG~~~~~~~~~~~~~pd~vv~~l~e~ 75 (75)
T PF13242_consen 2 CGKPSPGMLEQALKRLGVDPSRCVMVGDSLETDIEAAKAAGIDTILVLTGVYSPEDLEKAEHKPDYVVDDLKEA 75 (75)
T ss_dssp CSTTSHHHHHHHHHHHTSGGGGEEEEESSTTTHHHHHHHTTSEEEEESSSSSCCCGHHHSSSTTSEEESSGGGH
T ss_pred CCCCcHHHHHHHHHHcCCCHHHEEEEcCCcHhHHHHHHHcCCcEEEECCCCCCHHHHhccCCCCCEEECCHHhC
Confidence 58999999999999999999999999999 699999999999999999998 444443 46999999999874
No 177
>PRK10996 thioredoxin 2; Provisional
Probab=99.24 E-value=3.8e-11 Score=117.88 Aligned_cols=88 Identities=24% Similarity=0.434 Sum_probs=77.4
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
.+|+++|+||++||++|+.+.|.|.++++++.+. +.++.|.. +.+.+++++|
T Consensus 51 ~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~-v~~~~vd~---------------------------~~~~~l~~~~ 102 (139)
T PRK10996 51 DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGK-VRFVKVNT---------------------------EAERELSARF 102 (139)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCC-eEEEEEeC---------------------------CCCHHHHHhc
Confidence 5899999999999999999999999999988764 88888843 4456899999
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHH
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAA 568 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~ 568 (1089)
+|.++|+++++ ++|+++.++.|....+.+.++|+++
T Consensus 103 ~V~~~Ptlii~-~~G~~v~~~~G~~~~e~l~~~l~~~ 138 (139)
T PRK10996 103 RIRSIPTIMIF-KNGQVVDMLNGAVPKAPFDSWLNEA 138 (139)
T ss_pred CCCccCEEEEE-ECCEEEEEEcCCCCHHHHHHHHHHh
Confidence 99999999988 5999999999999988888888764
No 178
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.24 E-value=1.7e-11 Score=114.38 Aligned_cols=91 Identities=20% Similarity=0.259 Sum_probs=74.4
Q ss_pred cCCCEEEEEEecCCCcchhhhhhhH---HHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhH
Q 001380 451 LKGKVVVLDFWTYCCINCMHVLPDL---EFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNL 527 (1089)
Q Consensus 451 ~~gk~vll~Fwa~wC~~C~~~~p~l---~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l 527 (1089)
-.||++||+||++||++|+.+.+.+ .++.+.+++ ++.++.|... ++. +...++
T Consensus 9 ~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~-----~~~------------------~~~~~~ 64 (104)
T cd02953 9 AQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWT-----KND------------------PEITAL 64 (104)
T ss_pred HcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecC-----CCC------------------HHHHHH
Confidence 3579999999999999999999887 578888876 6899988542 110 112478
Q ss_pred HHHhCCCceeEEEEECC-CCcEEEEecCCCchhhHHHHH
Q 001380 528 WRELGVNSWPTFAVVGP-NGKLLAQLAGEGHRKDLDDLV 565 (1089)
Q Consensus 528 ~~~~~v~~~Pt~~lid~-~G~i~~~~~G~~~~~~l~~~l 565 (1089)
+++|+|.++|+++++++ +|+++.++.|..+.+++.++|
T Consensus 65 ~~~~~i~~~Pti~~~~~~~g~~~~~~~G~~~~~~l~~~l 103 (104)
T cd02953 65 LKRFGVFGPPTYLFYGPGGEPEPLRLPGFLTADEFLEAL 103 (104)
T ss_pred HHHcCCCCCCEEEEECCCCCCCCcccccccCHHHHHHHh
Confidence 88999999999999998 999999999999988887765
No 179
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.23 E-value=4.3e-11 Score=110.97 Aligned_cols=86 Identities=22% Similarity=0.411 Sum_probs=72.3
Q ss_pred cCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHH
Q 001380 451 LKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRE 530 (1089)
Q Consensus 451 ~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~ 530 (1089)
++|+ +||+|||+||++|+.+.|.+.+++++++..++.+..|.+ +.+..++++
T Consensus 15 ~~~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~---------------------------~~~~~~~~~ 66 (101)
T cd02994 15 LEGE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDV---------------------------TQEPGLSGR 66 (101)
T ss_pred hCCC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEc---------------------------cCCHhHHHH
Confidence 4666 679999999999999999999999988766688887743 445578999
Q ss_pred hCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHH
Q 001380 531 LGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVE 566 (1089)
Q Consensus 531 ~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~ 566 (1089)
|+|.++|+++++ ++|++ .++.|..+.+.+.++|+
T Consensus 67 ~~i~~~Pt~~~~-~~g~~-~~~~G~~~~~~l~~~i~ 100 (101)
T cd02994 67 FFVTALPTIYHA-KDGVF-RRYQGPRDKEDLISFIE 100 (101)
T ss_pred cCCcccCEEEEe-CCCCE-EEecCCCCHHHHHHHHh
Confidence 999999999998 88985 67889888888877765
No 180
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.23 E-value=2.4e-11 Score=112.60 Aligned_cols=85 Identities=24% Similarity=0.472 Sum_probs=73.2
Q ss_pred cCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHH
Q 001380 451 LKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRE 530 (1089)
Q Consensus 451 ~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~ 530 (1089)
..+++++|+||++||++|+.+.|.+.++++++++. +.+..|.+ |.+..++++
T Consensus 16 ~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~-~~~~~vd~---------------------------~~~~~~~~~ 67 (101)
T cd03003 16 NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGV-IRIGAVNC---------------------------GDDRMLCRS 67 (101)
T ss_pred cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCc-eEEEEEeC---------------------------CccHHHHHH
Confidence 35689999999999999999999999999999864 88888865 455689999
Q ss_pred hCCCceeEEEEECCCCcEEEEecCCCchhhHHHH
Q 001380 531 LGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDL 564 (1089)
Q Consensus 531 ~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~ 564 (1089)
|+|.++||++++ ++|+.+.++.|..+.+.+.++
T Consensus 68 ~~v~~~Pt~~~~-~~g~~~~~~~G~~~~~~l~~f 100 (101)
T cd03003 68 QGVNSYPSLYVF-PSGMNPEKYYGDRSKESLVKF 100 (101)
T ss_pred cCCCccCEEEEE-cCCCCcccCCCCCCHHHHHhh
Confidence 999999999999 789988888898887766543
No 181
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=99.23 E-value=9.9e-11 Score=132.04 Aligned_cols=71 Identities=21% Similarity=0.226 Sum_probs=59.3
Q ss_pred cCCCCCHHHHHHHHHHc--------CC-----CCCcEEEEcCCh-hhHHHHHHcCCeEEEEcCCC-CHHH-HhhcCCcEE
Q 001380 219 ENLKPAPDIFLSASKIL--------NV-----PTSECIVIEDAL-AGVQAAKAAQMRCIAVTTTL-SEER-LKEASPSLI 282 (1089)
Q Consensus 219 ~~~KP~~~~~~~~l~~l--------gv-----~p~~~v~VGD~~-~Di~aA~~aG~~~i~V~~g~-~~~~-l~~~~~d~v 282 (1089)
..+||++.+|+.+++.+ ++ ++++++||||++ +||.+|+++||.+++|.+|. ..++ .....|+++
T Consensus 230 ~~GKP~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~mIGD~~~tDI~ga~~~G~~silV~tG~~~~~~~~~~~~p~~v 309 (321)
T TIGR01456 230 TLGKPTKLTYDFAEDVLIDWEKRLSGTKPSTSPFHALYMVGDNPASDIIGAQNYGWFSCLVKTGVYNGGDDLKECKPTLI 309 (321)
T ss_pred EcCCCChHHHHHHHHHHHHHHhhhccccccCCChheEEEEcCChhhhhhhHHhCCceEEEecccccCCCCCCCCCCCCEE
Confidence 34999999999998887 43 447999999999 99999999999999999996 3322 224569999
Q ss_pred ecCcccC
Q 001380 283 RKEIGSV 289 (1089)
Q Consensus 283 i~dl~el 289 (1089)
++++.|+
T Consensus 310 v~~l~e~ 316 (321)
T TIGR01456 310 VNDVFDA 316 (321)
T ss_pred ECCHHHH
Confidence 9999887
No 182
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=2.3e-11 Score=127.92 Aligned_cols=92 Identities=26% Similarity=0.480 Sum_probs=83.6
Q ss_pred cCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHH
Q 001380 451 LKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRE 530 (1089)
Q Consensus 451 ~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~ 530 (1089)
.+-++|||+||++||++|+..+|.|.++..+|+.+ +.+.-|++ |.+..++.+
T Consensus 41 S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~-f~LakvN~---------------------------D~~p~vAaq 92 (304)
T COG3118 41 SREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGK-FKLAKVNC---------------------------DAEPMVAAQ 92 (304)
T ss_pred ccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCc-eEEEEecC---------------------------CcchhHHHH
Confidence 35579999999999999999999999999999975 88887765 778899999
Q ss_pred hCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHHH
Q 001380 531 LGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALLF 571 (1089)
Q Consensus 531 ~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~~ 571 (1089)
|||+++|+.|++ ++|+.+.-+.|....+.++++|+.++..
T Consensus 93 fgiqsIPtV~af-~dGqpVdgF~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 93 FGVQSIPTVYAF-KDGQPVDGFQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred hCcCcCCeEEEe-eCCcCccccCCCCcHHHHHHHHHHhcCh
Confidence 999999999999 9999999999999999999999887654
No 183
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=99.22 E-value=1.7e-09 Score=122.62 Aligned_cols=274 Identities=19% Similarity=0.316 Sum_probs=148.8
Q ss_pred CCCCceEEEeecCCeEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeC---CCEEEEEEC
Q 001380 600 LKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAK---KNLLYVADT 676 (1089)
Q Consensus 600 l~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~---g~~lyVaD~ 676 (1089)
|+.|++|++.| +|+|||++. .++|.+++.+|.....+....+- . ......+.||+++|+ ...|||+-+
T Consensus 1 L~~P~~~a~~p-dG~l~v~e~-~G~i~~~~~~g~~~~~v~~~~~v-~------~~~~~gllgia~~p~f~~n~~lYv~~t 71 (331)
T PF07995_consen 1 LNNPRSMAFLP-DGRLLVAER-SGRIWVVDKDGSLKTPVADLPEV-F------ADGERGLLGIAFHPDFASNGYLYVYYT 71 (331)
T ss_dssp ESSEEEEEEET-TSCEEEEET-TTEEEEEETTTEECEEEEE-TTT-B------TSTTBSEEEEEE-TTCCCC-EEEEEEE
T ss_pred CCCceEEEEeC-CCcEEEEeC-CceEEEEeCCCcCcceecccccc-c------ccccCCcccceeccccCCCCEEEEEEE
Confidence 57899999998 799999999 89999999888762222221010 0 111235799999984 456999876
Q ss_pred CC--------CEEEEEECCCC--e---EEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCC------
Q 001380 677 EN--------HALREIDFVND--T---VRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQ------ 737 (1089)
Q Consensus 677 ~n--------~~I~~~d~~~g--~---v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~------ 737 (1089)
.. .+|.++..+.+ . .+++... ... ....-.+-..|+|+|+| .|||+....
T Consensus 72 ~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~-~p~---------~~~~~H~g~~l~fgpDG-~LYvs~G~~~~~~~~ 140 (331)
T PF07995_consen 72 NADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTG-LPD---------TSSGNHNGGGLAFGPDG-KLYVSVGDGGNDDNA 140 (331)
T ss_dssp EE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEE-EES----------CSSSS-EEEEEE-TTS-EEEEEEB-TTTGGGG
T ss_pred cccCCCCCcceeeEEEeccCCccccccceEEEEE-eCC---------CCCCCCCCccccCCCCC-cEEEEeCCCCCcccc
Confidence 32 47777776554 1 2222210 000 00112356779999998 999986443
Q ss_pred -------cEEEEEECCCCeEEEEeCCCccccCC--CCCCCCccccCCceEEEcCCCCEEEEEeCCCCe---EEEEEcCCC
Q 001380 738 -------HQIWEHSTVDGVTRAFSGDGYERNLN--GSSSLNTSFAQPSGISLSPDFMEIYVADSESSS---IRALNLKTG 805 (1089)
Q Consensus 738 -------~~I~~~~~~~g~~~~~~g~g~~~~~~--g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~---I~~~~~~~~ 805 (1089)
++|.++++.+.. ...+. ..... .......++.+|.++++++..+.||++|.+... |.++.
T Consensus 141 ~~~~~~~G~ilri~~dG~~---p~dnP-~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~---- 212 (331)
T PF07995_consen 141 QDPNSLRGKILRIDPDGSI---PADNP-FVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIE---- 212 (331)
T ss_dssp CSTTSSTTEEEEEETTSSB----TTST-TTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-----
T ss_pred cccccccceEEEecccCcC---CCCCc-cccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEec----
Confidence 245555543210 00000 00000 011124678999999999994499999976543 33332
Q ss_pred CeEEEecCCCCCCCCcc--cc-CC----C---CCc-cccccc---cCceEEEEcc-------CCcEEEEeCCCCEEEEEe
Q 001380 806 GSRLLAGGDPIFPDNLF--KF-GD----R---DGM-GSEVLL---QHPLGVYCAK-------NGQIYVADSYNHKIKKLD 864 (1089)
Q Consensus 806 ~~~~~~g~~~~~~~~l~--~~-g~----~---dg~-~~~~~l---~~P~gva~~~-------~G~lyVaD~~n~~I~~~d 864 (1089)
.|+...+|.... .. +. . .+. .....+ ..|.|+++-. +|.++|++...++|.++.
T Consensus 213 -----~G~nYGWP~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~ 287 (331)
T PF07995_consen 213 -----PGGNYGWPYCEGGPKYSGPPIGDAPSCPGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLD 287 (331)
T ss_dssp -----TT-B--TTTBSSSCSTTSS-ECTGSS-TTS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEE
T ss_pred -----cCCcCCCCCCcCCCCCCCCccccccCCCCcCccceeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEe
Confidence 222222221110 00 00 0 000 000001 3578888752 578999999999999987
Q ss_pred CCCC-eEEEEeccCCCCCCCCcccccccC-CCceEEEccCCcEEEEECCCCEEEE
Q 001380 865 PASN-RVSTLAGIGKAGFKDGAALAAQLS-EPAGIIEAQNGNLFIADTNNNIIRY 917 (1089)
Q Consensus 865 ~~~~-~v~t~~g~g~~g~~~g~~~~~~l~-~P~gi~vd~~G~lyVad~~n~~I~~ 917 (1089)
.+.+ .+......- ..+. .|.+|++++||.|||++..+++|.+
T Consensus 288 ~~~~~~~~~~~~~~-----------~~~~~r~~~v~~~pDG~Lyv~~d~~G~iyR 331 (331)
T PF07995_consen 288 LDEDGSVTEEEEFL-----------GGFGGRPRDVAQGPDGALYVSDDSDGKIYR 331 (331)
T ss_dssp EETTEEEEEEEEEC-----------TTSSS-EEEEEEETTSEEEEEE-TTTTEEE
T ss_pred eecCCCccceEEcc-----------ccCCCCceEEEEcCCCeEEEEECCCCeEeC
Confidence 6533 322211100 1233 7999999999999999988888864
No 184
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=7.1e-11 Score=108.69 Aligned_cols=84 Identities=27% Similarity=0.524 Sum_probs=71.5
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
.+|.+|++|+|+||+||+.+.|.+.+|..+|++ +.++-|++ |...++++.|
T Consensus 20 ~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~--v~Flkvdv---------------------------de~~~~~~~~ 70 (106)
T KOG0907|consen 20 GDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD--VVFLKVDV---------------------------DELEEVAKEF 70 (106)
T ss_pred CCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC--CEEEEEec---------------------------ccCHhHHHhc
Confidence 369999999999999999999999999999997 78888855 2356899999
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCchhhHHHHHH
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVE 566 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~ 566 (1089)
+|.++||++++ ++|+.+.+..|.... .+++.|.
T Consensus 71 ~V~~~PTf~f~-k~g~~~~~~vGa~~~-~l~~~i~ 103 (106)
T KOG0907|consen 71 NVKAMPTFVFY-KGGEEVDEVVGANKA-ELEKKIA 103 (106)
T ss_pred CceEeeEEEEE-ECCEEEEEEecCCHH-HHHHHHH
Confidence 99999999999 999999999987543 5544443
No 185
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.20 E-value=7e-11 Score=110.14 Aligned_cols=88 Identities=19% Similarity=0.383 Sum_probs=70.9
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCC--CEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHH
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDM--PFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWR 529 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~--~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~ 529 (1089)
++++++|+||++||++|+.+.|.|+++++++++. ++.+..+.+ +....+++
T Consensus 14 ~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~---------------------------~~~~~~~~ 66 (104)
T cd03000 14 KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDA---------------------------TAYSSIAS 66 (104)
T ss_pred cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEEC---------------------------ccCHhHHh
Confidence 4679999999999999999999999999998653 366666643 23457889
Q ss_pred HhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHH
Q 001380 530 ELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAA 568 (1089)
Q Consensus 530 ~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~ 568 (1089)
.|+|.++|+++++. +| ...++.|..+.+.+.+++++.
T Consensus 67 ~~~I~~~Pt~~l~~-~~-~~~~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 67 EFGVRGYPTIKLLK-GD-LAYNYRGPRTKDDIVEFANRV 103 (104)
T ss_pred hcCCccccEEEEEc-CC-CceeecCCCCHHHHHHHHHhh
Confidence 99999999999994 45 446788988888888877653
No 186
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.19 E-value=6.3e-11 Score=110.53 Aligned_cols=85 Identities=18% Similarity=0.317 Sum_probs=72.1
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
.++++||+||++||++|+.+.|.++++.+++++ .+.+..|.+ |.+.++++.|
T Consensus 18 ~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~---------------------------~~~~~~~~~~ 69 (104)
T cd03004 18 RKEPWLVDFYAPWCGPCQALLPELRKAARALKG-KVKVGSVDC---------------------------QKYESLCQQA 69 (104)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC-CcEEEEEEC---------------------------CchHHHHHHc
Confidence 467999999999999999999999999999865 377888854 4566899999
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCc-hhhHHHH
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGH-RKDLDDL 564 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~-~~~l~~~ 564 (1089)
+|.++|+++++.++|+.+.++.|... .+.+.++
T Consensus 70 ~i~~~Pt~~~~~~g~~~~~~~~G~~~~~~~l~~~ 103 (104)
T cd03004 70 NIRAYPTIRLYPGNASKYHSYNGWHRDADSILEF 103 (104)
T ss_pred CCCcccEEEEEcCCCCCceEccCCCCCHHHHHhh
Confidence 99999999999766688899999876 7776654
No 187
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=99.19 E-value=2.7e-09 Score=116.56 Aligned_cols=258 Identities=21% Similarity=0.251 Sum_probs=160.6
Q ss_pred CCCCceEEEeecCCeEEEEeCCCCEEEEEeCC-CCEEEEEec--CCCCCCCC---CCCCccccCCcceeEEeeCCCEEEE
Q 001380 600 LKFPGKLAIDILNNRLFISDSNHNRIVVTDLD-GNFIVQIGS--SGEEGLRD---GSFDDATFNRPQGLAYNAKKNLLYV 673 (1089)
Q Consensus 600 l~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~-g~~~~~i~~--~g~~g~~d---G~~~~~~f~~P~gla~d~~g~~lyV 673 (1089)
+..|..+.+|+.++-=|+.-. .++|+++... ...+..... .......+ ....+..--+|-||+++..|+.|||
T Consensus 53 ~~g~E~~~fd~~~~gp~~~v~-dg~il~~~g~~~Gwv~~~~~~~s~~~~~~~~~~~~~~e~~CGRPLGl~f~~~ggdL~V 131 (376)
T KOG1520|consen 53 LTGPESLLFDPQGGGPYTGVV-DGRILKYTGNDDGWVKFADTKDSTNRSQCCDPGSFETEPLCGRPLGIRFDKKGGDLYV 131 (376)
T ss_pred cCChhhheecccCCCceEEEE-CCceEEEeccCceEEEEEeccccccccccCCCcceecccccCCcceEEeccCCCeEEE
Confidence 455666777764433332222 2466666542 222222211 10111112 2333445568999999999967999
Q ss_pred EECCCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCC----------------
Q 001380 674 ADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQ---------------- 737 (1089)
Q Consensus 674 aD~~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~---------------- 737 (1089)
||..- -|.+++++++..+.++... ..+++....++.+++ ++.+|++|+..
T Consensus 132 aDAYl-GL~~V~p~g~~a~~l~~~~------------~G~~~kf~N~ldI~~-~g~vyFTDSSsk~~~rd~~~a~l~g~~ 197 (376)
T KOG1520|consen 132 ADAYL-GLLKVGPEGGLAELLADEA------------EGKPFKFLNDLDIDP-EGVVYFTDSSSKYDRRDFVFAALEGDP 197 (376)
T ss_pred Eecce-eeEEECCCCCcceeccccc------------cCeeeeecCceeEcC-CCeEEEeccccccchhheEEeeecCCC
Confidence 99754 5899999998866665322 234567888999999 45999999664
Q ss_pred -cEEEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCe---EEEecC
Q 001380 738 -HQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGS---RLLAGG 813 (1089)
Q Consensus 738 -~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~---~~~~g~ 813 (1089)
+++.+||+.+...+++. ..+.-|+||++++|++.+.+|+....+|+++-.++... .+++.+
T Consensus 198 ~GRl~~YD~~tK~~~VLl---------------d~L~F~NGlaLS~d~sfvl~~Et~~~ri~rywi~g~k~gt~EvFa~~ 262 (376)
T KOG1520|consen 198 TGRLFRYDPSTKVTKVLL---------------DGLYFPNGLALSPDGSFVLVAETTTARIKRYWIKGPKAGTSEVFAEG 262 (376)
T ss_pred ccceEEecCcccchhhhh---------------hcccccccccCCCCCCEEEEEeeccceeeeeEecCCccCchhhHhhc
Confidence 34555555555544443 45778999999999999999999999999998876443 333333
Q ss_pred CCCCCCCccccCCCCCccccccccCceEEEEccCCcEEEEeC---------------------------------CC---
Q 001380 814 DPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADS---------------------------------YN--- 857 (1089)
Q Consensus 814 ~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~lyVaD~---------------------------------~n--- 857 (1089)
-|. .|..|..+++|+.||+=. .|
T Consensus 263 LPG---------------------~PDNIR~~~~G~fWVal~~~~~~~~~~~~~~p~vr~~~~~~~~~~~~~~~~~~~~~ 321 (376)
T KOG1520|consen 263 LPG---------------------YPDNIRRDSTGHFWVALHSKRSTLWRLLMKYPWVRKFIAKLPKYMELLYFLNNGGK 321 (376)
T ss_pred CCC---------------------CCcceeECCCCCEEEEEecccchHHHhhhcChHHHHHHHhhccchhhhhhhhccCC
Confidence 322 466677777888888751 11
Q ss_pred --CEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEc-cCCcEEEEECCCCEEEEEeC
Q 001380 858 --HKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEA-QNGNLFIADTNNNIIRYLDL 920 (1089)
Q Consensus 858 --~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd-~~G~lyVad~~n~~I~~~~~ 920 (1089)
-.|++.|.+|+.+..+-.. .| ...-..+.+. .+|+||+..-.++-|.++++
T Consensus 322 p~~~V~~~d~~G~il~~lhD~--~g----------~~~~~~sev~E~dg~LyiGS~~~p~i~~lkl 375 (376)
T KOG1520|consen 322 PHSAVKLSDETGKILESLHDK--EG----------KVITLVSEVGEHDGHLYIGSLFNPYIARLKL 375 (376)
T ss_pred CceEEEEecCCCcEEEEEecC--CC----------CceEEEEEEeecCCeEEEcccCcceeEEEec
Confidence 3455555565555555421 11 1112233333 36788888888888877765
No 188
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=2.1e-10 Score=108.13 Aligned_cols=137 Identities=24% Similarity=0.358 Sum_probs=112.0
Q ss_pred CCCCccccCCCCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCC--hhcHHHHH
Q 001380 430 VPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDN--EKDLEAIR 507 (1089)
Q Consensus 430 ~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~--~~~~~~~~ 507 (1089)
+-+|+. .+++|++++| ++++||++||.--||-|+.-. +...|+.|+++|+++|+.|+|+-+..|.. ..+.++++
T Consensus 5 ~yd~~~--~~~~G~~~~l-~~~~GkVlLIVNtASkCGfTp-QYegLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI~ 80 (162)
T COG0386 5 IYDFSV--KDIDGEPVSL-SDYKGKVLLIVNTASKCGFTP-QYEGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEIA 80 (162)
T ss_pred ccccee--eccCCCCccH-HHhCCcEEEEEEcccccCCcH-hHHHHHHHHHHHhhCCcEEEeccccccccCCCCCHHHHH
Confidence 345663 4679999999 999999999999999999887 67899999999999999999999998864 35788999
Q ss_pred HHHHH-cCCccceeec------CChhHHHHh-----------CCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHH
Q 001380 508 NAVLR-YGISHPVVND------GDMNLWREL-----------GVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAAL 569 (1089)
Q Consensus 508 ~~~~~-~~~~~~v~~d------~~~~l~~~~-----------~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l 569 (1089)
+|++. ||.+||+..- ....+++.+ .|.+--+-||||++|+++.++.....+++++..|+.+|
T Consensus 81 ~fC~~~YgVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~p~t~P~d~~~~Ie~lL 160 (162)
T COG0386 81 KFCQLNYGVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFSPKTKPEDIELAIEKLL 160 (162)
T ss_pred HHHHhccCceeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeCCCCChhhHHHHHHHHh
Confidence 99875 8999997631 223444433 23445688999999999999998889999999888877
Q ss_pred H
Q 001380 570 L 570 (1089)
Q Consensus 570 ~ 570 (1089)
+
T Consensus 161 ~ 161 (162)
T COG0386 161 A 161 (162)
T ss_pred c
Confidence 5
No 189
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=99.18 E-value=5.5e-11 Score=114.15 Aligned_cols=107 Identities=26% Similarity=0.379 Sum_probs=92.1
Q ss_pred CCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCC--CCEEEEEEeCCCCCChhcHHHHHHHHHHcCCcc
Q 001380 440 LNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKD--MPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISH 517 (1089)
Q Consensus 440 ~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~--~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (1089)
.+|..+..+..++||+|.++|-|.||++|+...|.|.+++++.++ ..+.||-||+ +.+.+....+.+.++.+|
T Consensus 20 ~~~~~~~~~~~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~-----D~~~~~~~~y~~~~~~~W 94 (157)
T KOG2501|consen 20 QDGTEVLASEALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSS-----DRDEESLDEYMLEHHGDW 94 (157)
T ss_pred cCCccchHhHhhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEec-----CCCHHHHHHHHHhcCCCe
Confidence 366666554689999999999999999999999999999999875 3699999976 678889999999999998
Q ss_pred cee---ecCChhHHHHhCCCceeEEEEECCCCcEEEE
Q 001380 518 PVV---NDGDMNLWRELGVNSWPTFAVVGPNGKLLAQ 551 (1089)
Q Consensus 518 ~v~---~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~ 551 (1089)
..+ .+...++.+.|+|.++|+..++.++|+++..
T Consensus 95 ~~iPf~d~~~~~l~~ky~v~~iP~l~i~~~dG~~v~~ 131 (157)
T KOG2501|consen 95 LAIPFGDDLIQKLSEKYEVKGIPALVILKPDGTVVTE 131 (157)
T ss_pred EEecCCCHHHHHHHHhcccCcCceeEEecCCCCEehH
Confidence 544 4456789999999999999999999988765
No 190
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.18 E-value=5.6e-11 Score=110.41 Aligned_cols=83 Identities=20% Similarity=0.423 Sum_probs=71.0
Q ss_pred CEEEEEEecCCCcchhhhhhhHHHHHHHcCC--CCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 454 KVVVLDFWTYCCINCMHVLPDLEFLEKKYKD--MPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 454 k~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~--~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
+++||+||++||++|+.++|.++++++++++ ..+.++.|.+ +.+..+++.|
T Consensus 17 ~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~---------------------------~~~~~~~~~~ 69 (102)
T cd03005 17 GNHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDC---------------------------TQHRELCSEF 69 (102)
T ss_pred CCEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEEC---------------------------CCChhhHhhc
Confidence 3599999999999999999999999999976 3588888843 3456789999
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCchhhHHHH
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDL 564 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~ 564 (1089)
+|.++|+++++ ++|+.+.++.|..+.+.+.++
T Consensus 70 ~v~~~Pt~~~~-~~g~~~~~~~G~~~~~~l~~~ 101 (102)
T cd03005 70 QVRGYPTLLLF-KDGEKVDKYKGTRDLDSLKEF 101 (102)
T ss_pred CCCcCCEEEEE-eCCCeeeEeeCCCCHHHHHhh
Confidence 99999999999 789888889999888777655
No 191
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=99.18 E-value=9.7e-09 Score=109.68 Aligned_cols=220 Identities=15% Similarity=0.221 Sum_probs=129.5
Q ss_pred CCCCCCCceEEEeecCCeEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEEC
Q 001380 597 TSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADT 676 (1089)
Q Consensus 597 ~~~l~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~ 676 (1089)
+.-...+.||++++.++.||........|+.++.+|++++.+...| |..|.||++..+|. +++++-
T Consensus 18 ~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g-------------~~D~EgI~y~g~~~-~vl~~E 83 (248)
T PF06977_consen 18 PGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDG-------------FGDYEGITYLGNGR-YVLSEE 83 (248)
T ss_dssp TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS--------------SSEEEEEE-STTE-EEEEET
T ss_pred CCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCC-------------CCCceeEEEECCCE-EEEEEc
Confidence 3445668999999988999977777899999999999999887653 45889999986554 777887
Q ss_pred CCCEEEEEECC--CCeE-----EEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCC-cEEEEEEC--C
Q 001380 677 ENHALREIDFV--NDTV-----RTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQ-HQIWEHST--V 746 (1089)
Q Consensus 677 ~n~~I~~~d~~--~g~v-----~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~-~~I~~~~~--~ 746 (1089)
..++|..++.. +..+ ..+. .+..... =..--|||+|+.++.||++-... ..|+.++. .
T Consensus 84 r~~~L~~~~~~~~~~~~~~~~~~~~~-l~~~~~~-----------N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~ 151 (248)
T PF06977_consen 84 RDQRLYIFTIDDDTTSLDRADVQKIS-LGFPNKG-----------NKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPG 151 (248)
T ss_dssp TTTEEEEEEE----TT--EEEEEEEE----S--------------SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-
T ss_pred CCCcEEEEEEeccccccchhhceEEe-cccccCC-----------CcceEEEEEcCCCCEEEEEeCCCChhhEEEccccC
Confidence 78899888763 2222 1221 1111000 01356999999999999986553 36777775 2
Q ss_pred CCeEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCC
Q 001380 747 DGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGD 826 (1089)
Q Consensus 747 ~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~ 826 (1089)
...+.......... ....+..|++|+++|..+.|||...++.+|..++.++..+..+.=.. |
T Consensus 152 ~~~~~~~~~~~~~~-------~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~----------g- 213 (248)
T PF06977_consen 152 GFDLFVSDDQDLDD-------DKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDR----------G- 213 (248)
T ss_dssp SS--EEEE-HHHH--------HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-ST----------T-
T ss_pred ccceeecccccccc-------ccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCC----------c-
Confidence 22222222111100 12345679999999998899999999999999998755444331100 0
Q ss_pred CCCccccccccCceEEEEccCCcEEEEeCCCCEEEEE
Q 001380 827 RDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKL 863 (1089)
Q Consensus 827 ~dg~~~~~~l~~P~gva~~~~G~lyVaD~~n~~I~~~ 863 (1089)
. .+-...+..|-|||+|++|+|||+..-| ..++|
T Consensus 214 ~--~gl~~~~~QpEGIa~d~~G~LYIvsEpN-lfy~f 247 (248)
T PF06977_consen 214 F--HGLSKDIPQPEGIAFDPDGNLYIVSEPN-LFYRF 247 (248)
T ss_dssp G--GG-SS---SEEEEEE-TT--EEEEETTT-EEEEE
T ss_pred c--cCcccccCCccEEEECCCCCEEEEcCCc-eEEEe
Confidence 0 0112347789999999999999998754 65555
No 192
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.17 E-value=3.2e-11 Score=114.20 Aligned_cols=106 Identities=22% Similarity=0.283 Sum_probs=74.2
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHH---HcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHH
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEK---KYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLW 528 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~---~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~ 528 (1089)
+||++|+.||++||++|+...+.+.+..+ .+++ ++.++.+.+ ++..+...++....+...+. ..+.+++
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~--~~~~~l~ 75 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKD-DFQVIFVNI-----DDSRDESEAVLDFDGQKNVR--LSNKELA 75 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHC-ECEEEECES-----HSHHHHHHHHHSHTCHSSCH--HHHHHHH
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhc-CeEEEEEec-----CCcccccccccccccchhhh--HHHHHHH
Confidence 68999999999999999999888886443 3333 478888854 44444444454444432222 2345899
Q ss_pred HHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHH
Q 001380 529 RELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLV 565 (1089)
Q Consensus 529 ~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l 565 (1089)
+.|||.++|+++++|++|+++.++.|..+.+++.++|
T Consensus 76 ~~~~v~gtPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 76 QRYGVNGTPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp HHTT--SSSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred HHcCCCccCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 9999999999999999999999999999998887664
No 193
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=99.16 E-value=5.6e-09 Score=120.50 Aligned_cols=215 Identities=19% Similarity=0.273 Sum_probs=137.2
Q ss_pred cCCcceeEEeeCCCEEEEEECCC------------CEEEEEECCC--Ce---EEEEecCCCCCCCCCCCCcccccccCCc
Q 001380 656 FNRPQGLAYNAKKNLLYVADTEN------------HALREIDFVN--DT---VRTLAGNGTKGSDYQGGEKGTSQLLNSP 718 (1089)
Q Consensus 656 f~~P~gla~d~~g~~lyVaD~~n------------~~I~~~d~~~--g~---v~~~ag~g~~~~~~~~~~~~~~~~l~~P 718 (1089)
+..|.+|++|++|+ |||++..+ .+|++++..+ |. ++.++ ..+..|
T Consensus 13 ~~~P~~ia~d~~G~-l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa-----------------~~l~~p 74 (367)
T TIGR02604 13 LRNPIAVCFDERGR-LWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFA-----------------EELSMV 74 (367)
T ss_pred cCCCceeeECCCCC-EEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEee-----------------cCCCCc
Confidence 67999999999999 99998532 3787776532 22 34444 125689
Q ss_pred eeEEEecCCCEEEEEECCCcEEEEEECCCC------eEEEEe-CCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEe
Q 001380 719 WDVCYKPINEKVYIAMAGQHQIWEHSTVDG------VTRAFS-GDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVAD 791 (1089)
Q Consensus 719 ~~la~~~~g~~lyvad~~~~~I~~~~~~~g------~~~~~~-g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad 791 (1089)
.+|++.++| |||++. .+|+++...++ ..+.+. +-+.. + ......++++++++|| +||+++
T Consensus 75 ~Gi~~~~~G--lyV~~~--~~i~~~~d~~gdg~ad~~~~~l~~~~~~~----~----~~~~~~~~~l~~gpDG-~LYv~~ 141 (367)
T TIGR02604 75 TGLAVAVGG--VYVATP--PDILFLRDKDGDDKADGEREVLLSGFGGQ----I----NNHHHSLNSLAWGPDG-WLYFNH 141 (367)
T ss_pred cceeEecCC--EEEeCC--CeEEEEeCCCCCCCCCCccEEEEEccCCC----C----CcccccccCceECCCC-CEEEec
Confidence 999999866 999864 57888843221 223332 11100 0 0113458899999998 999988
Q ss_pred CCC-------------------CeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccCCcEEE
Q 001380 792 SES-------------------SSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYV 852 (1089)
Q Consensus 792 ~~~-------------------~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~lyV 852 (1089)
... +.|.+++++++....++.+ +..|.|++++++|++|+
T Consensus 142 G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G----------------------~rnp~Gl~~d~~G~l~~ 199 (367)
T TIGR02604 142 GNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHG----------------------FQNPYGHSVDSWGDVFF 199 (367)
T ss_pred ccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecC----------------------cCCCccceECCCCCEEE
Confidence 631 5688888887766666542 67899999999999999
Q ss_pred EeCCCCEEEEEeCCC--C---eEEEE------eccCCCCCCC-------------CcccccccCCCceEEEcc-------
Q 001380 853 ADSYNHKIKKLDPAS--N---RVSTL------AGIGKAGFKD-------------GAALAAQLSEPAGIIEAQ------- 901 (1089)
Q Consensus 853 aD~~n~~I~~~d~~~--~---~v~t~------~g~g~~g~~~-------------g~~~~~~l~~P~gi~vd~------- 901 (1089)
+|..++...++++-. + ..... ...+...... -.........|.|+++-.
T Consensus 200 tdn~~~~~~~i~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ap~G~~~y~g~~fp~~ 279 (367)
T TIGR02604 200 CDNDDPPLCRVTPVAEGGRNGYQSFNGRRYDHADRGADHEVPTGEWRQDDRGVETVGDVAGGGTAPCGIAFYRGDALPEE 279 (367)
T ss_pred EccCCCceeEEcccccccccCCCCCCCcccccccccccccccccccccccccccccccccCCCccccEEEEeCCCcCCHH
Confidence 998776666554311 0 00000 0000000000 000111235799999862
Q ss_pred -CCcEEEEECCCCEEEEEeCCCC
Q 001380 902 -NGNLFIADTNNNIIRYLDLNKE 923 (1089)
Q Consensus 902 -~G~lyVad~~n~~I~~~~~~~~ 923 (1089)
.|+++|++...++|.++.++..
T Consensus 280 ~~g~~fv~~~~~~~v~~~~l~~~ 302 (367)
T TIGR02604 280 YRGLLLVGDAHGQLIVRYSLEPK 302 (367)
T ss_pred HCCCEEeeeccCCEEEEEEeecC
Confidence 4679999999999999998743
No 194
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=99.15 E-value=6.1e-11 Score=127.81 Aligned_cols=185 Identities=21% Similarity=0.220 Sum_probs=104.2
Q ss_pred EEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhhcCCCHHHHHHHHHhhcCCCCCCHHHHH--HHHHHHHHHHhc
Q 001380 82 VLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVKGFDSEAAK--KRFFEIYLDKYA 159 (1089)
Q Consensus 82 ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 159 (1089)
|+||+||||+++...+..+.+.+....+...+.....+..+++...+.+.+....++.. ..++.. ......|.....
T Consensus 1 ~lfD~DGvL~~~~~~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~~g~~~-~~~~iits~~~~~~~l~~~~ 79 (236)
T TIGR01460 1 FLFDIDGVLWLGHKPIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSLLGVDV-SPDQIITSGSVTKDLLRQRF 79 (236)
T ss_pred CEEeCcCccCcCCccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHhcCCCC-CHHHeeeHHHHHHHHHHHhC
Confidence 58999999999988777555444333333344445556667777777777766555432 222221 111122222211
Q ss_pred CCCCCCCCccHHHHHHHHHhCCCe----------------EEEEcCCCh----Hh---HHHHHHHCCCC-----------
Q 001380 160 KPNSGIGFPGALELINQCKSKGLK----------------VAVASSADR----IK---VDANLAAAGLP----------- 205 (1089)
Q Consensus 160 ~~~~~~~~pG~~~lL~~Lk~~Gi~----------------vaIvSn~~~----~~---~~~~l~~~gl~----------- 205 (1089)
.. ...+.-|...+.+.|++.|+. -+|+-+.+. .. +...+++-+..
T Consensus 80 ~~-~~v~v~G~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~a~~~l~~~~~~~i~tN~d~~~~ 158 (236)
T TIGR01460 80 EG-EKVYVIGVGELRESLEGLGFRNDFFDDIDHLAIEKIPAAVIVGEPSDFSYDELAKAAYLLAEGDVPFIAANRDDLVR 158 (236)
T ss_pred CC-CEEEEECCHHHHHHHHHcCCcCcccCcccccccCCCCeEEEECCCCCcCHHHHHHHHHHHhCCCCeEEEECCCCCCC
Confidence 11 112333444455555555542 122222111 11 11112211011
Q ss_pred ----------CCCccE---EEEcCCccCCCCCHHHHHHHHHHcCCCCCcE-EEEcCCh-hhHHHHHHcCCeEEEEcCC
Q 001380 206 ----------VSMFDA---IVSADAFENLKPAPDIFLSASKILNVPTSEC-IVIEDAL-AGVQAAKAAQMRCIAVTTT 268 (1089)
Q Consensus 206 ----------~~~fd~---i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~-v~VGD~~-~Di~aA~~aG~~~i~V~~g 268 (1089)
..+++. +.+......+||++.+|+.++++++++++++ +||||++ +||.+|+++|+++++|.+|
T Consensus 159 ~~~g~~~~~~g~~~~~i~~~~g~~~~~~~KP~~~~~~~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~~G~~~i~v~~G 236 (236)
T TIGR01460 159 LGDGRFRPGAGAIAAGIKELSGREPTVVGKPSPAIYRAALNLLQARPERRDVMVGDNLRTDILGAKNAGFDTLLVLTG 236 (236)
T ss_pred CCCCcEeecchHHHHHHHHHhCceeeeecCCCHHHHHHHHHHhCCCCccceEEECCCcHHHHHHHHHCCCcEEEEecC
Confidence 011111 1111222357999999999999999998887 9999999 8999999999999999875
No 195
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.15 E-value=1.1e-10 Score=108.42 Aligned_cols=88 Identities=22% Similarity=0.409 Sum_probs=75.3
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCC-CEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHH
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDM-PFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRE 530 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~-~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~ 530 (1089)
++++++|.||++||++|+.+.+.++++++.++.. ++.++.+.+ |.+..+++.
T Consensus 12 ~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~---------------------------~~~~~~~~~ 64 (102)
T TIGR01126 12 SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDA---------------------------TAEKDLASR 64 (102)
T ss_pred cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEc---------------------------cchHHHHHh
Confidence 7899999999999999999999999999998865 377777743 445688999
Q ss_pred hCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHH
Q 001380 531 LGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEA 567 (1089)
Q Consensus 531 ~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~ 567 (1089)
|+|.++|+++++++++. ...+.|....+.+..+|++
T Consensus 65 ~~i~~~P~~~~~~~~~~-~~~~~g~~~~~~l~~~i~~ 100 (102)
T TIGR01126 65 FGVSGFPTIKFFPKGKK-PVDYEGGRDLEAIVEFVNE 100 (102)
T ss_pred CCCCcCCEEEEecCCCc-ceeecCCCCHHHHHHHHHh
Confidence 99999999999988877 6788998888888887765
No 196
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.15 E-value=2.7e-10 Score=104.44 Aligned_cols=77 Identities=18% Similarity=0.114 Sum_probs=67.2
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
.+|+|||+|||+||++|+.+-|.|.+++++|++. +.++-|.+ |...++++.|
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~-~~f~kVDV---------------------------Dev~dva~~y 64 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKM-ASIYLVDV---------------------------DKVPVYTQYF 64 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCc-eEEEEEec---------------------------cccHHHHHhc
Confidence 6899999999999999999999999999999754 77777754 6678899999
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCc
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGH 557 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~ 557 (1089)
+|++.|+++++ ++|+-+....|.++
T Consensus 65 ~I~amPtfvff-kngkh~~~d~gt~~ 89 (114)
T cd02986 65 DISYIPSTIFF-FNGQHMKVDYGSPD 89 (114)
T ss_pred CceeCcEEEEE-ECCcEEEEecCCCC
Confidence 99999999999 88888777666553
No 197
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.15 E-value=1.4e-10 Score=109.12 Aligned_cols=86 Identities=19% Similarity=0.286 Sum_probs=71.2
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecC-ChhHHH-
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDG-DMNLWR- 529 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~-~~~l~~- 529 (1089)
+||++||+||++||++|+.+.|.+.++++++++.++.+..|.+ |. +..+++
T Consensus 20 ~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~---------------------------d~~~~~~~~~ 72 (109)
T cd02993 20 RNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNA---------------------------DGEQREFAKE 72 (109)
T ss_pred cCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEEC---------------------------CccchhhHHh
Confidence 5799999999999999999999999999999876788888854 22 345665
Q ss_pred HhCCCceeEEEEECCCCcEEEEecCC-CchhhHHHH
Q 001380 530 ELGVNSWPTFAVVGPNGKLLAQLAGE-GHRKDLDDL 564 (1089)
Q Consensus 530 ~~~v~~~Pt~~lid~~G~i~~~~~G~-~~~~~l~~~ 564 (1089)
.|+|..+|++++++++++....+.|. .+.+.+..+
T Consensus 73 ~~~v~~~Pti~~f~~~~~~~~~y~g~~~~~~~l~~f 108 (109)
T cd02993 73 ELQLKSFPTILFFPKNSRQPIKYPSEQRDVDSLLMF 108 (109)
T ss_pred hcCCCcCCEEEEEcCCCCCceeccCCCCCHHHHHhh
Confidence 49999999999998888877888885 566666554
No 198
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.14 E-value=1.4e-08 Score=116.28 Aligned_cols=273 Identities=18% Similarity=0.210 Sum_probs=164.0
Q ss_pred CceEEEeecCCeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEE
Q 001380 603 PGKLAIDILNNRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHAL 681 (1089)
Q Consensus 603 P~~vavd~~~g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I 681 (1089)
+.++++++++.++||++. .+.|.++|+. ++.+.++..+ ..|.|++++++|+++|+++...+.+
T Consensus 39 h~~~~~s~Dgr~~yv~~r-dg~vsviD~~~~~~v~~i~~G---------------~~~~~i~~s~DG~~~~v~n~~~~~v 102 (369)
T PF02239_consen 39 HAGLKFSPDGRYLYVANR-DGTVSVIDLATGKVVATIKVG---------------GNPRGIAVSPDGKYVYVANYEPGTV 102 (369)
T ss_dssp EEEEE-TT-SSEEEEEET-TSEEEEEETTSSSEEEEEE-S---------------SEEEEEEE--TTTEEEEEEEETTEE
T ss_pred eeEEEecCCCCEEEEEcC-CCeEEEEECCcccEEEEEecC---------------CCcceEEEcCCCCEEEEEecCCCce
Confidence 455677776678999975 5899999996 7788887665 2689999999999999999999999
Q ss_pred EEEECCCCe-EEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCe---EEEEeCCC
Q 001380 682 REIDFVNDT-VRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGV---TRAFSGDG 757 (1089)
Q Consensus 682 ~~~d~~~g~-v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~---~~~~~g~g 757 (1089)
..+|.++.+ +.++...+..... .-+.+.+|..++....++++....++||.+|..+.. ++.+. .
T Consensus 103 ~v~D~~tle~v~~I~~~~~~~~~----------~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~-~- 170 (369)
T PF02239_consen 103 SVIDAETLEPVKTIPTGGMPVDG----------PESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIK-V- 170 (369)
T ss_dssp EEEETTT--EEEEEE--EE-TTT----------S---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE---
T ss_pred eEeccccccceeecccccccccc----------cCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeec-c-
Confidence 999987754 4444322211100 112445777777776777788889999999976542 22222 1
Q ss_pred ccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEec-C-CCCCCC--Cc--ccc------C
Q 001380 758 YERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAG-G-DPIFPD--NL--FKF------G 825 (1089)
Q Consensus 758 ~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g-~-~~~~~~--~l--~~~------g 825 (1089)
-..|++..+++++++++++...++.|..++..++....... + .+.... +. ..+ +
T Consensus 171 --------------g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~ 236 (369)
T PF02239_consen 171 --------------GRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATS 236 (369)
T ss_dssp ---------------TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEE
T ss_pred --------------cccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeec
Confidence 13689999999998999998888999999988765543321 1 110000 00 000 0
Q ss_pred CC-CC---------cc----c-------cccccCceEEEEccCC-cEEEE---eCCCCEEEEEeCCCCeE-EEEeccCCC
Q 001380 826 DR-DG---------MG----S-------EVLLQHPLGVYCAKNG-QIYVA---DSYNHKIKKLDPASNRV-STLAGIGKA 879 (1089)
Q Consensus 826 ~~-dg---------~~----~-------~~~l~~P~gva~~~~G-~lyVa---D~~n~~I~~~d~~~~~v-~t~~g~g~~ 879 (1089)
+. .. .. . -..-..|..+...|++ ++||. ...+..|.+||.++..+ .++.. +.
T Consensus 237 ~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~-~~- 314 (369)
T PF02239_consen 237 GLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITP-GP- 314 (369)
T ss_dssp BSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHH-HH-
T ss_pred cccceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEec-cC-
Confidence 00 00 00 0 0011245778888888 47776 45578999999887644 33321 00
Q ss_pred CCCCCcccccccCCCceEEEccCCc-EEEEECCCC-EEEEEeCCCCCceEEEEe
Q 001380 880 GFKDGAALAAQLSEPAGIIEAQNGN-LFIADTNNN-IIRYLDLNKEEPELQTLE 931 (1089)
Q Consensus 880 g~~~g~~~~~~l~~P~gi~vd~~G~-lyVad~~n~-~I~~~~~~~~~~~~~~l~ 931 (1089)
-..+..+.+.++|+ +||+.++.+ +|.++|..+. ..+..+.
T Consensus 315 -----------~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl-~~~~~i~ 356 (369)
T PF02239_consen 315 -----------GKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTL-KEKKRIP 356 (369)
T ss_dssp -----------T--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTT-EEEEEEE
T ss_pred -----------CCcEeccEECCCCCEEEEEEecCCCEEEEEECCCc-EEEEEEE
Confidence 01266888999995 999999988 9999999887 2344444
No 199
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=3.2e-10 Score=106.97 Aligned_cols=125 Identities=15% Similarity=0.249 Sum_probs=105.4
Q ss_pred cCCCCCCCCCCccccCCCCCceeecccccCCC-EEEEEEe-cCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCCh
Q 001380 423 NRKTTPIVPEFPAKLDWLNTAPLQFRRDLKGK-VVVLDFW-TYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNE 500 (1089)
Q Consensus 423 ~~~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk-~vll~Fw-a~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~ 500 (1089)
..++|+.+|||++.++ ||+.++| .++.|+ +||++|| +...|.|..+...+++-|++++..+.+|+|+|.
T Consensus 62 ~v~~Gd~iPD~tL~de--dg~sisL-kkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~aeV~GlS~------ 132 (211)
T KOG0855|consen 62 KVNKGDAIPDFTLKDE--DGKSISL-KKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAGAEVIGLSG------ 132 (211)
T ss_pred eeecCCcCCCcccccC--CCCeeee-eeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhcCceEEeecc------
Confidence 5689999999997655 9999999 788775 8888888 567788999999999999999988999999974
Q ss_pred hcHHHHHHHHHHcCCccceeecCChhHHHHhCCCcee-------EEEEECCCCcEEEEecCCC
Q 001380 501 KDLEAIRNAVLRYGISHPVVNDGDMNLWRELGVNSWP-------TFAVVGPNGKLLAQLAGEG 556 (1089)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~~v~~~P-------t~~lid~~G~i~~~~~G~~ 556 (1089)
|+....++|..+++++|..+.|+.+++.+.+|+...| ..|++|+.|.......-..
T Consensus 133 D~s~sqKaF~sKqnlPYhLLSDpk~e~ik~lGa~k~p~gg~~~Rsh~if~kg~~k~~ik~~~i 195 (211)
T KOG0855|consen 133 DDSASQKAFASKQNLPYHLLSDPKNEVIKDLGAPKDPFGGLPGRSHYIFDKGGVKQLIKNNQI 195 (211)
T ss_pred CchHHHHHhhhhccCCeeeecCcchhHHHHhCCCCCCCCCcccceEEEEecCCeEEEEEeccc
Confidence 6788889999999999999999999999999987543 6888887776544433333
No 200
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.13 E-value=1.7e-10 Score=108.58 Aligned_cols=88 Identities=23% Similarity=0.430 Sum_probs=72.6
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
.|+++||+||++||++|+++.|.+.++++++.+ .+.++.|+++ . +.+..+++.|
T Consensus 17 ~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~-~~~~~~v~~~-----~--------------------~~~~~~~~~~ 70 (109)
T cd03002 17 TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDG-LVQVAAVDCD-----E--------------------DKNKPLCGKY 70 (109)
T ss_pred CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcC-CceEEEEecC-----c--------------------cccHHHHHHc
Confidence 578999999999999999999999999999875 3778888651 1 2256899999
Q ss_pred CCCceeEEEEECCCC----cEEEEecCCCchhhHHHHH
Q 001380 532 GVNSWPTFAVVGPNG----KLLAQLAGEGHRKDLDDLV 565 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G----~i~~~~~G~~~~~~l~~~l 565 (1089)
+|.++|+++++++++ .+...+.|..+.+.+.++|
T Consensus 71 ~i~~~Pt~~~~~~~~~~~~~~~~~~~G~~~~~~l~~fi 108 (109)
T cd03002 71 GVQGFPTLKVFRPPKKASKHAVEDYNGERSAKAIVDFV 108 (109)
T ss_pred CCCcCCEEEEEeCCCcccccccccccCccCHHHHHHHh
Confidence 999999999998776 3556788888888887765
No 201
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.13 E-value=2.8e-10 Score=104.56 Aligned_cols=85 Identities=14% Similarity=0.347 Sum_probs=73.7
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
.+|+++++||++||+.|+.+.|.+.++.+++.+ ++.++.|.. |.+.++++.|
T Consensus 12 ~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~-~v~~~~id~---------------------------d~~~~l~~~~ 63 (97)
T cd02949 12 SDRLILVLYTSPTCGPCRTLKPILNKVIDEFDG-AVHFVEIDI---------------------------DEDQEIAEAA 63 (97)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHHhCC-ceEEEEEEC---------------------------CCCHHHHHHC
Confidence 578999999999999999999999999999875 477777743 4566789999
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCchhhHHHHH
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLV 565 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l 565 (1089)
+|.++|+++++ ++|+++.++.|....+++.+++
T Consensus 64 ~v~~vPt~~i~-~~g~~v~~~~g~~~~~~~~~~l 96 (97)
T cd02949 64 GIMGTPTVQFF-KDKELVKEISGVKMKSEYREFI 96 (97)
T ss_pred CCeeccEEEEE-ECCeEEEEEeCCccHHHHHHhh
Confidence 99999999999 5899999999988888777665
No 202
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.13 E-value=2.4e-10 Score=107.68 Aligned_cols=88 Identities=14% Similarity=0.083 Sum_probs=76.2
Q ss_pred CCEEEEEEecCCCcc--hh--hhhhhHHHHHHHc-CCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhH
Q 001380 453 GKVVVLDFWTYCCIN--CM--HVLPDLEFLEKKY-KDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNL 527 (1089)
Q Consensus 453 gk~vll~Fwa~wC~~--C~--~~~p~l~~l~~~~-~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l 527 (1089)
.+++|++||+.||++ |+ ...|.+.+++.++ +..++.+.-|++ |.+.++
T Consensus 27 ~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~---------------------------d~~~~L 79 (120)
T cd03065 27 DVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDS---------------------------KKDAKV 79 (120)
T ss_pred CceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeC---------------------------CCCHHH
Confidence 358999999999988 99 8888899998887 234588888865 677899
Q ss_pred HHHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHH
Q 001380 528 WRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAAL 569 (1089)
Q Consensus 528 ~~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l 569 (1089)
+++|||.++||++++ ++|+++. +.|....+.+.++|++++
T Consensus 80 a~~~~I~~iPTl~lf-k~G~~v~-~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 80 AKKLGLDEEDSIYVF-KDDEVIE-YDGEFAADTLVEFLLDLI 119 (120)
T ss_pred HHHcCCccccEEEEE-ECCEEEE-eeCCCCHHHHHHHHHHHh
Confidence 999999999999999 7999887 999999999999998765
No 203
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=99.13 E-value=7.5e-11 Score=117.32 Aligned_cols=94 Identities=15% Similarity=0.114 Sum_probs=86.1
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCcEEE
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIV 244 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~v~ 244 (1089)
.++||+.++|++|+ ++++++|+|++..+.++.+++++++...+|+.+++++++...||+ |.++++++|.+|++|+|
T Consensus 45 ~l~pG~~e~L~~L~-~~~~l~I~Ts~~~~~~~~il~~l~~~~~~f~~i~~~~d~~~~KP~---~~k~l~~l~~~p~~~i~ 120 (148)
T smart00577 45 KKRPGVDEFLKRAS-ELFELVVFTAGLRMYADPVLDLLDPKKYFGYRRLFRDECVFVKGK---YVKDLSLLGRDLSNVII 120 (148)
T ss_pred EECCCHHHHHHHHH-hccEEEEEeCCcHHHHHHHHHHhCcCCCEeeeEEECccccccCCe---EeecHHHcCCChhcEEE
Confidence 67999999999999 569999999999999999999999952456999999999999997 99999999999999999
Q ss_pred EcCChhhHHHHHHcCCeE
Q 001380 245 IEDALAGVQAAKAAQMRC 262 (1089)
Q Consensus 245 VGD~~~Di~aA~~aG~~~ 262 (1089)
|||+..|+++|.++|+..
T Consensus 121 i~Ds~~~~~aa~~ngI~i 138 (148)
T smart00577 121 IDDSPDSWPFHPENLIPI 138 (148)
T ss_pred EECCHHHhhcCccCEEEe
Confidence 999999999999999654
No 204
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=99.12 E-value=2.7e-10 Score=128.71 Aligned_cols=90 Identities=22% Similarity=0.166 Sum_probs=83.4
Q ss_pred CCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHH----CCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCc
Q 001380 166 GFPGALELINQCKSKGLKVAVASSADRIKVDANLAA----AGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSE 241 (1089)
Q Consensus 166 ~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~----~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~ 241 (1089)
+++|+.++|+.|+++|++++|+|++....++..+++ +++. ++|+.+.+. .||+++.+.++++++|+.+++
T Consensus 32 ~~~~~~e~L~~L~~~Gi~lai~S~n~~~~a~~~l~~~~~~~~~~-~~f~~~~~~-----~~pk~~~i~~~~~~l~i~~~~ 105 (320)
T TIGR01686 32 LHKTLQEKIKTLKKQGFLLALASKNDEDDAKKVFERRKDFILQA-EDFDARSIN-----WGPKSESLRKIAKKLNLGTDS 105 (320)
T ss_pred cHHHHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHhCccccCcH-HHeeEEEEe-----cCchHHHHHHHHHHhCCCcCc
Confidence 578999999999999999999999999999999999 8886 889888665 589999999999999999999
Q ss_pred EEEEcCChhhHHHHHHcCCe
Q 001380 242 CIVIEDALAGVQAAKAAQMR 261 (1089)
Q Consensus 242 ~v~VGD~~~Di~aA~~aG~~ 261 (1089)
++||||+..|+.++++++-.
T Consensus 106 ~vfidD~~~d~~~~~~~lp~ 125 (320)
T TIGR01686 106 FLFIDDNPAERANVKITLPV 125 (320)
T ss_pred EEEECCCHHHHHHHHHHCCC
Confidence 99999999999999997743
No 205
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=99.11 E-value=3.8e-10 Score=132.59 Aligned_cols=92 Identities=23% Similarity=0.372 Sum_probs=83.7
Q ss_pred CCccHHHHHHHHHhCCCeEEEEcCCCh------------HhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHH
Q 001380 166 GFPGALELINQCKSKGLKVAVASSADR------------IKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASK 233 (1089)
Q Consensus 166 ~~pG~~~lL~~Lk~~Gi~vaIvSn~~~------------~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~ 233 (1089)
++||+.+.|+.|+++|++++|+||... ..+..+++.+|+. |+.+++.+.....||++.|+.++++
T Consensus 198 l~pgV~e~L~~L~~~Gy~IvIvTNQ~gI~~G~~~~~~~~~ki~~iL~~lgip---fdviia~~~~~~RKP~pGm~~~a~~ 274 (526)
T TIGR01663 198 IFPEIPEKLKELEADGFKICIFTNQGGIARGKINADDFKAKIEAIVAKLGVP---FQVFIAIGAGFYRKPLTGMWDHLKE 274 (526)
T ss_pred cccCHHHHHHHHHHCCCEEEEEECCcccccCcccHHHHHHHHHHHHHHcCCc---eEEEEeCCCCCCCCCCHHHHHHHHH
Confidence 689999999999999999999999654 4578899999996 8889988888889999999999999
Q ss_pred HcC----CCCCcEEEEcCChhhHHHHHHcCC
Q 001380 234 ILN----VPTSECIVIEDALAGVQAAKAAQM 260 (1089)
Q Consensus 234 ~lg----v~p~~~v~VGD~~~Di~aA~~aG~ 260 (1089)
+++ +++++++||||+..|+++|+++|.
T Consensus 275 ~~~~~~~Id~~~S~~VGDaagr~~~g~~ag~ 305 (526)
T TIGR01663 275 EANDGTEIQEDDCFFVGDAAGRPANGKAAGK 305 (526)
T ss_pred hcCcccCCCHHHeEEeCCcccchHHHHhcCC
Confidence 985 899999999999999999998885
No 206
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.11 E-value=2.5e-10 Score=107.28 Aligned_cols=86 Identities=20% Similarity=0.349 Sum_probs=70.3
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCC----C-CEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKD----M-PFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMN 526 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~----~-~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~ 526 (1089)
.++++||+|||+||++|+.+.|.++++++++++ . .+.+..|.+ |.+..
T Consensus 17 ~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~---------------------------d~~~~ 69 (108)
T cd02996 17 SAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDC---------------------------DKESD 69 (108)
T ss_pred cCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEEC---------------------------CCCHH
Confidence 468999999999999999999999999987642 1 377777754 56678
Q ss_pred HHHHhCCCceeEEEEECCCCcE-EEEecCCCchhhHHHHH
Q 001380 527 LWRELGVNSWPTFAVVGPNGKL-LAQLAGEGHRKDLDDLV 565 (1089)
Q Consensus 527 l~~~~~v~~~Pt~~lid~~G~i-~~~~~G~~~~~~l~~~l 565 (1089)
++++|+|.++|+++++ ++|++ ...+.|..+.+.+.++|
T Consensus 70 l~~~~~v~~~Ptl~~~-~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 70 IADRYRINKYPTLKLF-RNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred HHHhCCCCcCCEEEEE-eCCcCcceecCCCCCHHHHHhhC
Confidence 9999999999999999 78884 46688888887776653
No 207
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.10 E-value=3.9e-10 Score=103.66 Aligned_cols=82 Identities=21% Similarity=0.184 Sum_probs=71.8
Q ss_pred CCCEEEEEEecCC--CcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHH
Q 001380 452 KGKVVVLDFWTYC--CINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWR 529 (1089)
Q Consensus 452 ~gk~vll~Fwa~w--C~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~ 529 (1089)
.|.++||+||+.| ||+|+.+.|.|.+++++|++. +.++-|.. |.+.+++.
T Consensus 26 ~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~-v~f~kVdi---------------------------d~~~~la~ 77 (111)
T cd02965 26 AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGR-FRAAVVGR---------------------------ADEQALAA 77 (111)
T ss_pred CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCc-EEEEEEEC---------------------------CCCHHHHH
Confidence 5788999999997 999999999999999999865 66767743 56779999
Q ss_pred HhCCCceeEEEEECCCCcEEEEecCCCchhhHH
Q 001380 530 ELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLD 562 (1089)
Q Consensus 530 ~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~ 562 (1089)
.|+|.++||++++ ++|+++.+..|....+++.
T Consensus 78 ~f~V~sIPTli~f-kdGk~v~~~~G~~~~~e~~ 109 (111)
T cd02965 78 RFGVLRTPALLFF-RDGRYVGVLAGIRDWDEYV 109 (111)
T ss_pred HcCCCcCCEEEEE-ECCEEEEEEeCccCHHHHh
Confidence 9999999999999 8999999999988776653
No 208
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.10 E-value=3.4e-08 Score=110.59 Aligned_cols=233 Identities=12% Similarity=0.117 Sum_probs=148.9
Q ss_pred CCCceEEEeecCCeEEEEeC---------CCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCE
Q 001380 601 KFPGKLAIDILNNRLFISDS---------NHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNL 670 (1089)
Q Consensus 601 ~~P~~vavd~~~g~L~vsd~---------~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~ 670 (1089)
..|.++ ++++++.|||+.+ ..+.|.++|.. ++.+..+..+..+-+ .....|..++++++|++
T Consensus 47 ~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~-------~~~~~~~~~~ls~dgk~ 118 (352)
T TIGR02658 47 FLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRF-------LVGTYPWMTSLTPDNKT 118 (352)
T ss_pred CCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchh-------hccCccceEEECCCCCE
Confidence 468886 9998899999999 88999999987 777777766533111 12457889999999999
Q ss_pred EEEEECC-CCEEEEEECCCCeEEEEecCCC--CCCCC---------CCCCccc------------cccc---------CC
Q 001380 671 LYVADTE-NHALREIDFVNDTVRTLAGNGT--KGSDY---------QGGEKGT------------SQLL---------NS 717 (1089)
Q Consensus 671 lyVaD~~-n~~I~~~d~~~g~v~~~ag~g~--~~~~~---------~~~~~~~------------~~~l---------~~ 717 (1089)
|||++.. .+.|-++|+.++++..-...+. ..+.. .++.... ..++ ..
T Consensus 119 l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~r 198 (352)
T TIGR02658 119 LLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINH 198 (352)
T ss_pred EEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccC
Confidence 9999966 8999999998876554222211 11100 0010000 0111 23
Q ss_pred ceeEEEec-CCCEEEEEECCCcEEEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCce---EEEcCCCCEEEEEe--
Q 001380 718 PWDVCYKP-INEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSG---ISLSPDFMEIYVAD-- 791 (1089)
Q Consensus 718 P~~la~~~-~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~g---lav~~~g~~lyvad-- 791 (1089)
| .+.+ +|..+|++.. +.|..+|..+........-.. ...+.. ..--.|.| ++++++|+++||+.
T Consensus 199 P---~~~~~dg~~~~vs~e--G~V~~id~~~~~~~~~~~~~~--~~~~~~---~~~wrP~g~q~ia~~~dg~~lyV~~~~ 268 (352)
T TIGR02658 199 P---AYSNKSGRLVWPTYT--GKIFQIDLSSGDAKFLPAIEA--FTEAEK---ADGWRPGGWQQVAYHRARDRIYLLADQ 268 (352)
T ss_pred C---ceEcCCCcEEEEecC--CeEEEEecCCCcceecceeee--cccccc---ccccCCCcceeEEEcCCCCEEEEEecC
Confidence 3 3344 6667777766 888888865443322110000 000000 00124555 99999999999953
Q ss_pred -------CCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccCCc--EEEEeCCCCEEEE
Q 001380 792 -------SESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQ--IYVADSYNHKIKK 862 (1089)
Q Consensus 792 -------~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~--lyVaD~~n~~I~~ 862 (1089)
...+.|..+|..++.+.....- -..|.+|++++||+ +|+++..++.|.+
T Consensus 269 ~~~~thk~~~~~V~ViD~~t~kvi~~i~v----------------------G~~~~~iavS~Dgkp~lyvtn~~s~~VsV 326 (352)
T TIGR02658 269 RAKWTHKTASRFLFVVDAKTGKRLRKIEL----------------------GHEIDSINVSQDAKPLLYALSTGDKTLYI 326 (352)
T ss_pred CccccccCCCCEEEEEECCCCeEEEEEeC----------------------CCceeeEEECCCCCeEEEEeCCCCCcEEE
Confidence 2236899999987765432110 12589999999985 8889888899999
Q ss_pred EeCCCCe-EEEE
Q 001380 863 LDPASNR-VSTL 873 (1089)
Q Consensus 863 ~d~~~~~-v~t~ 873 (1089)
+|..+++ +.++
T Consensus 327 iD~~t~k~i~~i 338 (352)
T TIGR02658 327 FDAETGKELSSV 338 (352)
T ss_pred EECcCCeEEeee
Confidence 9998774 4444
No 209
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.10 E-value=5.8e-10 Score=103.62 Aligned_cols=87 Identities=32% Similarity=0.497 Sum_probs=78.5
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
.++++||.||++||++|+...|.|.++.+++++ ++.++.|.. +....++++|
T Consensus 16 ~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~---------------------------~~~~~l~~~~ 67 (103)
T PF00085_consen 16 SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD-NVKFAKVDC---------------------------DENKELCKKY 67 (103)
T ss_dssp TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT-TSEEEEEET---------------------------TTSHHHHHHT
T ss_pred cCCCEEEEEeCCCCCccccccceeccccccccc-ccccchhhh---------------------------hccchhhhcc
Confidence 369999999999999999999999999999987 788898854 4567899999
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHH
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEA 567 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~ 567 (1089)
+|.++|+++++ .+|+...++.|..+.+.|.++|++
T Consensus 68 ~v~~~Pt~~~~-~~g~~~~~~~g~~~~~~l~~~i~~ 102 (103)
T PF00085_consen 68 GVKSVPTIIFF-KNGKEVKRYNGPRNAESLIEFIEK 102 (103)
T ss_dssp TCSSSSEEEEE-ETTEEEEEEESSSSHHHHHHHHHH
T ss_pred CCCCCCEEEEE-ECCcEEEEEECCCCHHHHHHHHHc
Confidence 99999999999 788888899999999999998874
No 210
>PRK11590 hypothetical protein; Provisional
Probab=99.09 E-value=2.3e-09 Score=113.71 Aligned_cols=178 Identities=15% Similarity=0.071 Sum_probs=112.1
Q ss_pred ceEEEEecCCcccCCchHHHHHHHHHH-HHcCCCC-CHHhHhhhcCCCHHHHHHH-HHh--------hcCCCCCCHHHHH
Q 001380 79 VSAVLFDMDGVLCNSEEPSRRAAVDVF-AEMGVEV-TVEDFLPFMGTGEANFLGG-VAS--------VKGVKGFDSEAAK 147 (1089)
Q Consensus 79 ~k~ViFD~DGTL~d~~~~~~~a~~~~~-~~~g~~~-~~~~~~~~~~~~~~~~~~~-~~~--------~~~~~~~~~~~~~ 147 (1089)
.++++||+||||++ ..+...+...+ +++++.. ..+.+....+.+....... ... ..+. ..+..
T Consensus 6 ~k~~iFD~DGTL~~--~d~~~~~~~~~~~~~g~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~g~----~~~~~ 79 (211)
T PRK11590 6 RRVVFFDLDGTLHQ--QDMFGSFLRYLLRRQPLNLLLVLPLLPVIGLGLLVKGRAARWPMSLLLWGCTFGH----SEARL 79 (211)
T ss_pred ceEEEEecCCCCcc--cchHHHHHHHHHHhcchhhHHHhHHHHHhccCcccchhhhhhhHHHHHHHHHcCC----CHHHH
Confidence 47999999999993 34666676666 7888763 3355555666554332222 100 1122 22233
Q ss_pred HHHHHHHHHHhcCCCCCCCCccHHHHH-HHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCC-c---cC--
Q 001380 148 KRFFEIYLDKYAKPNSGIGFPGALELI-NQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADA-F---EN-- 220 (1089)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~pG~~~lL-~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~-~---~~-- 220 (1089)
+++.+.|.+.+... ..++||+.++| +.++++|++++|+||.....++.+++.+++. . .+.+++.+- . +.
T Consensus 80 ~~~~~~f~~~~~~~--~~~~pga~e~L~~~l~~~G~~l~IvSas~~~~~~~il~~l~~~-~-~~~~i~t~l~~~~tg~~~ 155 (211)
T PRK11590 80 QALEADFVRWFRDN--VTAFPVVQERLTTYLLSSDADVWLITGSPQPLVEQVYFDTPWL-P-RVNLIASQMQRRYGGWVL 155 (211)
T ss_pred HHHHHHHHHHHHHh--CcCCccHHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHHcccc-c-cCceEEEEEEEEEccEEC
Confidence 33444443333322 25699999999 5789899999999999999999999999962 2 344444431 1 00
Q ss_pred CC-CC-HHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcC
Q 001380 221 LK-PA-PDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTT 267 (1089)
Q Consensus 221 ~K-P~-~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~ 267 (1089)
+. .. .+=..++-+.++.+..++.+.||+.+|+.+...+| +.+.|+.
T Consensus 156 g~~c~g~~K~~~l~~~~~~~~~~~~aY~Ds~~D~pmL~~a~-~~~~vnp 203 (211)
T PRK11590 156 TLRCLGHEKVAQLERKIGTPLRLYSGYSDSKQDNPLLYFCQ-HRWRVTP 203 (211)
T ss_pred CccCCChHHHHHHHHHhCCCcceEEEecCCcccHHHHHhCC-CCEEECc
Confidence 00 00 11122333444667788999999999999999999 5566755
No 211
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.08 E-value=4.5e-10 Score=104.68 Aligned_cols=87 Identities=25% Similarity=0.422 Sum_probs=70.9
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCC-CCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHH
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKD-MPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRE 530 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~-~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~ 530 (1089)
++++++|+||++||++|+++.|.++++.+++++ ..+.++.+.+. . +....+++.
T Consensus 16 ~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~-----~--------------------~~~~~~~~~ 70 (104)
T cd02997 16 KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCT-----K--------------------PEHDALKEE 70 (104)
T ss_pred hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECC-----C--------------------CccHHHHHh
Confidence 567999999999999999999999999999874 34677777431 0 225678999
Q ss_pred hCCCceeEEEEECCCCcEEEEecCCCchhhHHHH
Q 001380 531 LGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDL 564 (1089)
Q Consensus 531 ~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~ 564 (1089)
|+|.++|+++++ ++|+++.++.|....+.+.++
T Consensus 71 ~~i~~~Pt~~~~-~~g~~~~~~~g~~~~~~l~~~ 103 (104)
T cd02997 71 YNVKGFPTFKYF-ENGKFVEKYEGERTAEDIIEF 103 (104)
T ss_pred CCCccccEEEEE-eCCCeeEEeCCCCCHHHHHhh
Confidence 999999998777 689988899998887777654
No 212
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.08 E-value=6.1e-10 Score=103.04 Aligned_cols=87 Identities=29% Similarity=0.509 Sum_probs=75.2
Q ss_pred CCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHhC
Q 001380 453 GKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRELG 532 (1089)
Q Consensus 453 gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~~ 532 (1089)
+++++|.||++||++|+++.|.|+++.+++.+ ++.++.|.. +.+..++++|+
T Consensus 14 ~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~---------------------------~~~~~~~~~~~ 65 (101)
T TIGR01068 14 DKPVLVDFWAPWCGPCKMIAPILEELAKEYEG-KVKFVKLNV---------------------------DENPDIAAKYG 65 (101)
T ss_pred CCcEEEEEECCCCHHHHHhCHHHHHHHHHhcC-CeEEEEEEC---------------------------CCCHHHHHHcC
Confidence 57999999999999999999999999988874 488888854 44567889999
Q ss_pred CCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHH
Q 001380 533 VNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAA 568 (1089)
Q Consensus 533 v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~ 568 (1089)
|..+|+++++ ++|+++....|..+.+.+.++|++.
T Consensus 66 v~~~P~~~~~-~~g~~~~~~~g~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 66 IRSIPTLLLF-KNGKEVDRSVGALPKAALKQLINKN 100 (101)
T ss_pred CCcCCEEEEE-eCCcEeeeecCCCCHHHHHHHHHhh
Confidence 9999999999 7899988888988888888887654
No 213
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.08 E-value=5.6e-10 Score=117.20 Aligned_cols=92 Identities=18% Similarity=0.355 Sum_probs=77.8
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
.+++++|+||++||++|+++.|.++++++++++. +.+..|.+ +.+..++++|
T Consensus 51 ~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~-v~~~~VD~---------------------------~~~~~l~~~~ 102 (224)
T PTZ00443 51 TTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQ-VNVADLDA---------------------------TRALNLAKRF 102 (224)
T ss_pred CCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCC-eEEEEecC---------------------------cccHHHHHHc
Confidence 3578999999999999999999999999999864 66666633 3456799999
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHHHh
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALLFY 572 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~~~ 572 (1089)
+|.++|++++++ +|+++....|..+.+++.+++.+.++..
T Consensus 103 ~I~~~PTl~~f~-~G~~v~~~~G~~s~e~L~~fi~~~~~~~ 142 (224)
T PTZ00443 103 AIKGYPTLLLFD-KGKMYQYEGGDRSTEKLAAFALGDFKKA 142 (224)
T ss_pred CCCcCCEEEEEE-CCEEEEeeCCCCCHHHHHHHHHHHHHhh
Confidence 999999999996 8998888888889999999988877544
No 214
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.06 E-value=5.5e-10 Score=110.13 Aligned_cols=75 Identities=20% Similarity=0.279 Sum_probs=66.1
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
+++++||+||++||++|+.+.|.++++++++++.++.++.|.+ |...+++++|
T Consensus 46 ~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDv---------------------------d~~~~la~~~ 98 (152)
T cd02962 46 KRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDI---------------------------GRFPNVAEKF 98 (152)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEEC---------------------------CCCHHHHHHc
Confidence 4689999999999999999999999999999876799999965 4556788888
Q ss_pred CCCc------eeEEEEECCCCcEEEEecC
Q 001380 532 GVNS------WPTFAVVGPNGKLLAQLAG 554 (1089)
Q Consensus 532 ~v~~------~Pt~~lid~~G~i~~~~~G 554 (1089)
+|.. +||++++ ++|+.+.+..|
T Consensus 99 ~V~~~~~v~~~PT~ilf-~~Gk~v~r~~G 126 (152)
T cd02962 99 RVSTSPLSKQLPTIILF-QGGKEVARRPY 126 (152)
T ss_pred CceecCCcCCCCEEEEE-ECCEEEEEEec
Confidence 8877 9999999 69999999887
No 215
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=99.06 E-value=8.8e-10 Score=112.49 Aligned_cols=124 Identities=21% Similarity=0.315 Sum_probs=97.3
Q ss_pred CCCCCCCCccccCCCCCceeecccccCCCEEEEEEecCCCcc-hhhhhhhHHHHHHHcCC--CCEEEEEEeCCCCCChhc
Q 001380 426 TTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCIN-CMHVLPDLEFLEKKYKD--MPFTVVGVHSAKFDNEKD 502 (1089)
Q Consensus 426 ~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~-C~~~~p~l~~l~~~~~~--~~v~vi~v~~~~~~~~~~ 502 (1089)
.....|+|++.. .+|+++++ ++++||++||+|..+-|+. |...+..|.++.+++.+ ..+.+|.||++ +..|+
T Consensus 28 ~~~~~~~f~L~d--~~G~~~~~-~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvD--P~~DT 102 (174)
T PF02630_consen 28 NPRIVPDFTLTD--QDGKTVTL-DDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVD--PERDT 102 (174)
T ss_dssp TSCSSST-EEEE--TTSSEEEG-GGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESS--TTTC-
T ss_pred CCccCCCcEEEc--CCCCEecH-HHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeC--CCCCC
Confidence 445678898654 49999999 9999999999999999987 99999999999988764 47999999985 34477
Q ss_pred HHHHHHHHHHcCCccceeecC---ChhHHHHhCCC----------------ceeEEEEECCCCcEEEEecC
Q 001380 503 LEAIRNAVLRYGISHPVVNDG---DMNLWRELGVN----------------SWPTFAVVGPNGKLLAQLAG 554 (1089)
Q Consensus 503 ~~~~~~~~~~~~~~~~v~~d~---~~~l~~~~~v~----------------~~Pt~~lid~~G~i~~~~~G 554 (1089)
++.+++|+++++..|..+... -.++++.|++. +...++||||+|+++..+.+
T Consensus 103 p~~L~~Y~~~~~~~~~~ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~y~~ 173 (174)
T PF02630_consen 103 PEVLKKYAKKFGPDFIGLTGSREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAIYNL 173 (174)
T ss_dssp HHHHHHHHHCHTTTCEEEEEEHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEEECS
T ss_pred HHHHHHHHHhcCCCcceeEeCHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEEEcc
Confidence 999999999999887665433 24577777753 33578999999999988764
No 216
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=99.05 E-value=5.2e-09 Score=110.26 Aligned_cols=179 Identities=18% Similarity=0.184 Sum_probs=116.8
Q ss_pred EEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhhcCC-CHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHhc
Q 001380 81 AVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGT-GEANFLGGVASVKGVKGFDSEAAKKRFFEIYLDKYA 159 (1089)
Q Consensus 81 ~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (1089)
+|+||+|+||+|.... ..+++.++.+.-..++.+.... ....+...+.......+...++..+.+ .
T Consensus 2 LvvfDFD~TIvd~dsd-----~~v~~~l~~~~~~~~l~~~~~~~~wt~~m~~vl~~L~~~gvt~~~I~~~l--------~ 68 (234)
T PF06888_consen 2 LVVFDFDHTIVDQDSD-----DWVIELLPPEELPEELRESYPKGGWTEYMDRVLQLLHEQGVTPEDIRDAL--------R 68 (234)
T ss_pred EEEEeCCCCccCCccH-----HHHHHhcCCcccHHHHHHhccccchHHHHHHHHHHHHHcCCCHHHHHHHH--------H
Confidence 5899999999987632 2345555555433444433331 122333333332222222333222222 1
Q ss_pred CCCCCCCCccHHHHHHHH--HhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCC----cc--------------
Q 001380 160 KPNSGIGFPGALELINQC--KSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADA----FE-------------- 219 (1089)
Q Consensus 160 ~~~~~~~~pG~~~lL~~L--k~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~----~~-------------- 219 (1089)
..++.||+.++++.+ ++.|+.+.|+|+++.-.++.+|++.|+. ..|+.|++... .+
T Consensus 69 ---~ip~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~fI~~iL~~~gl~-~~f~~I~TNpa~~~~~G~l~v~pyh~h~C~~ 144 (234)
T PF06888_consen 69 ---SIPIDPGMKELLRFLAKNQRGFDLIIISDANSFFIETILEHHGLR-DCFSEIFTNPACFDADGRLRVRPYHSHGCSL 144 (234)
T ss_pred ---cCCCCccHHHHHHHHHhcCCCceEEEEeCCcHhHHHHHHHhCCCc-cccceEEeCCceecCCceEEEeCccCCCCCc
Confidence 127899999999999 4579999999999999999999999996 99988887621 11
Q ss_pred --CCCCCHHHHHHHHHH---cCCCCCcEEEEcCChhhHHHHHHcCC-eEEEEcCCCCHHHHhh
Q 001380 220 --NLKPAPDIFLSASKI---LNVPTSECIVIEDALAGVQAAKAAQM-RCIAVTTTLSEERLKE 276 (1089)
Q Consensus 220 --~~KP~~~~~~~~l~~---lgv~p~~~v~VGD~~~Di~aA~~aG~-~~i~V~~g~~~~~l~~ 276 (1089)
..--|..++++.++. -|+..++++||||+.+|+-.+.+.+- +.+....|.....+..
T Consensus 145 C~~NmCK~~il~~~~~~~~~~g~~~~rviYiGDG~nD~Cp~~~L~~~D~v~~R~~~~l~~~i~ 207 (234)
T PF06888_consen 145 CPPNMCKGKILERLLQEQAQRGVPYDRVIYIGDGRNDFCPALRLRPRDVVFPRKGYPLHKLIQ 207 (234)
T ss_pred CCCccchHHHHHHHHHHHhhcCCCcceEEEECCCCCCcCcccccCCCCEEecCCCChHHHHHh
Confidence 012355667777665 37788999999999999999998765 4555555654444433
No 217
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=99.04 E-value=6.4e-09 Score=115.58 Aligned_cols=103 Identities=17% Similarity=0.202 Sum_probs=85.4
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHC-C-------CCCCCccEEEEcCCcc-----------------
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAA-G-------LPVSMFDAIVSADAFE----------------- 219 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~-g-------l~~~~fd~i~~~~~~~----------------- 219 (1089)
...||+.++|+.|+++|++++|+||.....++.+++.+ | +. ++||.|+++..-.
T Consensus 184 ~~~pgl~elL~~Lr~~G~klfLvTNS~~~yt~~im~~l~g~~~~~~~w~-~yFD~IIt~a~KP~FF~~~~pf~~v~~~~g 262 (343)
T TIGR02244 184 LRDPKLPLFLSKLKEHGKKLFLLTNSDYDYTDKGMKYLLGPFLGEHDWR-DYFDVVIVDARKPGFFTEGRPFRQVDVETG 262 (343)
T ss_pred ccchhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhhCCcccccchH-hhCcEEEeCCCCCcccCCCCceEEEeCCCC
Confidence 45899999999999999999999999999999999996 7 75 9999999875311
Q ss_pred CCCCCH------------HHHHHHHHHcCCCCCcEEEEcCCh-hhHHHHH-HcCCeEEEEcCC
Q 001380 220 NLKPAP------------DIFLSASKILNVPTSECIVIEDAL-AGVQAAK-AAQMRCIAVTTT 268 (1089)
Q Consensus 220 ~~KP~~------------~~~~~~l~~lgv~p~~~v~VGD~~-~Di~aA~-~aG~~~i~V~~g 268 (1089)
..++.. .-.....+.+|+++++++||||.+ +||.+++ .+||++++|..-
T Consensus 263 ~~~~~~~~~l~~g~vY~gGn~~~~~~~l~~~~~~vlYvGD~i~~Di~~~kk~~Gw~TvlI~pE 325 (343)
T TIGR02244 263 SLKWGEVDGLEPGKVYSGGSLKQFHELLKWRGKEVLYFGDHIYGDLLRSKKKRGWRTAAIIPE 325 (343)
T ss_pred cccCCccccccCCCeEeCCCHHHHHHHHCCCCCcEEEECCcchHHHHhhHHhcCcEEEEEchh
Confidence 111111 114677788899999999999999 9999998 999999999653
No 218
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.03 E-value=1.2e-09 Score=100.43 Aligned_cols=82 Identities=21% Similarity=0.389 Sum_probs=67.8
Q ss_pred CCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHhC
Q 001380 453 GKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRELG 532 (1089)
Q Consensus 453 gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~~ 532 (1089)
+|+++|+||++||++|+.+.|.|.++.+++. ..+.++.+.. +...+++++|+
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~-~~i~~~~vd~---------------------------~~~~~~~~~~~ 65 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEAF-PSVLFLSIEA---------------------------EELPEISEKFE 65 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHHHHhC-CceEEEEEcc---------------------------ccCHHHHHhcC
Confidence 7999999999999999999999999999973 3588888832 33567899999
Q ss_pred CCceeEEEEECCCCcEEEEecCCCchhhHHHH
Q 001380 533 VNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDL 564 (1089)
Q Consensus 533 v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~ 564 (1089)
+.++|+++++ .+|+++.++.|. ..+.+.+.
T Consensus 66 i~~~Pt~~~~-~~g~~~~~~~g~-~~~~l~~~ 95 (97)
T cd02984 66 ITAVPTFVFF-RNGTIVDRVSGA-DPKELAKK 95 (97)
T ss_pred CccccEEEEE-ECCEEEEEEeCC-CHHHHHHh
Confidence 9999999999 589999998886 34445443
No 219
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.03 E-value=6.7e-10 Score=103.66 Aligned_cols=86 Identities=21% Similarity=0.410 Sum_probs=72.4
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCC-CCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecC-ChhHHH
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKD-MPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDG-DMNLWR 529 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~-~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~-~~~l~~ 529 (1089)
.+|+++|.||++||++|+.+.|.+.++.++++. .++.++.+.+ +. ...+++
T Consensus 17 ~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~---------------------------~~~~~~~~~ 69 (105)
T cd02998 17 DKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDA---------------------------DEANKDLAK 69 (105)
T ss_pred CCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEEC---------------------------CCcchhhHH
Confidence 357999999999999999999999999999873 4688888854 23 468899
Q ss_pred HhCCCceeEEEEECCCCcEEEEecCCCchhhHHHH
Q 001380 530 ELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDL 564 (1089)
Q Consensus 530 ~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~ 564 (1089)
+|+|.++|++++++++|+....+.|....+.+.++
T Consensus 70 ~~~i~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~ 104 (105)
T cd02998 70 KYGVSGFPTLKFFPKGSTEPVKYEGGRDLEDLVKF 104 (105)
T ss_pred hCCCCCcCEEEEEeCCCCCccccCCccCHHHHHhh
Confidence 99999999999998887777778888887777655
No 220
>PRK08238 hypothetical protein; Validated
Probab=99.00 E-value=8.4e-09 Score=121.14 Aligned_cols=98 Identities=22% Similarity=0.227 Sum_probs=84.2
Q ss_pred CCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCcEE
Q 001380 164 GIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECI 243 (1089)
Q Consensus 164 ~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~v 243 (1089)
.++.||+.+++++++++|++++|+|+..+..++.+++++|+ ||.++++++....||+++. ..+.+.++. ++++
T Consensus 71 lp~~pga~e~L~~lk~~G~~v~LaTas~~~~a~~i~~~lGl----Fd~Vigsd~~~~~kg~~K~-~~l~~~l~~--~~~~ 143 (479)
T PRK08238 71 LPYNEEVLDYLRAERAAGRKLVLATASDERLAQAVAAHLGL----FDGVFASDGTTNLKGAAKA-AALVEAFGE--RGFD 143 (479)
T ss_pred CCCChhHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCC----CCEEEeCCCccccCCchHH-HHHHHHhCc--cCee
Confidence 35789999999999999999999999999999999999987 8899999988777776654 234456653 6689
Q ss_pred EEcCChhhHHHHHHcCCeEEEEcCCC
Q 001380 244 VIEDALAGVQAAKAAQMRCIAVTTTL 269 (1089)
Q Consensus 244 ~VGD~~~Di~aA~~aG~~~i~V~~g~ 269 (1089)
|+||+.+|+.+++.+| +.+.|+.+.
T Consensus 144 yvGDS~~Dlp~~~~A~-~av~Vn~~~ 168 (479)
T PRK08238 144 YAGNSAADLPVWAAAR-RAIVVGASP 168 (479)
T ss_pred EecCCHHHHHHHHhCC-CeEEECCCH
Confidence 9999999999999999 888898764
No 221
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=99.00 E-value=3.3e-09 Score=105.38 Aligned_cols=93 Identities=27% Similarity=0.266 Sum_probs=71.3
Q ss_pred CCccHHHHHHHHHhCCC--eEEEEcCC-------ChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcC
Q 001380 166 GFPGALELINQCKSKGL--KVAVASSA-------DRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILN 236 (1089)
Q Consensus 166 ~~pG~~~lL~~Lk~~Gi--~vaIvSn~-------~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lg 236 (1089)
+.|.+.+.+++|++.+. .+.|+||+ ....++.+-+.+|++ .+... ..|| ..+..+++.++
T Consensus 60 i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~~~~~~lgIp-----vl~h~----~kKP--~~~~~i~~~~~ 128 (168)
T PF09419_consen 60 IPPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGERAEALEKALGIP-----VLRHR----AKKP--GCFREILKYFK 128 (168)
T ss_pred CCHHHHHHHHHHHHHCCCCeEEEEECCCCcccCccHHHHHHHHHhhCCc-----EEEeC----CCCC--ccHHHHHHHHh
Confidence 34555666777887765 49999997 367788888899986 22211 3466 56667777765
Q ss_pred C-----CCCcEEEEcCCh-hhHHHHHHcCCeEEEEcCCC
Q 001380 237 V-----PTSECIVIEDAL-AGVQAAKAAQMRCIAVTTTL 269 (1089)
Q Consensus 237 v-----~p~~~v~VGD~~-~Di~aA~~aG~~~i~V~~g~ 269 (1089)
. .|+|++||||.+ +||.+|...|+.+|||..|+
T Consensus 129 ~~~~~~~p~eiavIGDrl~TDVl~gN~~G~~tilv~~gv 167 (168)
T PF09419_consen 129 CQKVVTSPSEIAVIGDRLFTDVLMGNRMGSYTILVTDGV 167 (168)
T ss_pred hccCCCCchhEEEEcchHHHHHHHhhccCceEEEEecCc
Confidence 4 499999999999 99999999999999998875
No 222
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=98.99 E-value=3.2e-08 Score=106.60 Aligned_cols=121 Identities=16% Similarity=0.153 Sum_probs=93.6
Q ss_pred CCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEE------EEcCCccCCCCCH---------HHH
Q 001380 164 GIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAI------VSADAFENLKPAP---------DIF 228 (1089)
Q Consensus 164 ~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i------~~~~~~~~~KP~~---------~~~ 228 (1089)
..+.||+.++++.|+++|++++|+|++....++..++++|+. ..+..+ +..+....++|.| .++
T Consensus 120 l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL~~lgl~-~~~~~IvSN~L~f~~dGvltG~~~P~i~~~~K~~~v~ 198 (277)
T TIGR01544 120 VMLKDGYENFFDKLQQHSIPVFIFSAGIGNVLEEVLRQAGVY-HPNVKVVSNFMDFDEDGVLKGFKGPLIHTFNKNHDVA 198 (277)
T ss_pred CccCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHHcCCC-CcCceEEeeeEEECCCCeEeCCCCCcccccccHHHHH
Confidence 478999999999999999999999999999999999999995 666667 4445555678877 677
Q ss_pred HHHHHHcC--CCCCcEEEEcCChhhHHHHHHc-C---CeEEEEcCCCCHHHHhhc--CCcEEecC
Q 001380 229 LSASKILN--VPTSECIVIEDALAGVQAAKAA-Q---MRCIAVTTTLSEERLKEA--SPSLIRKE 285 (1089)
Q Consensus 229 ~~~l~~lg--v~p~~~v~VGD~~~Di~aA~~a-G---~~~i~V~~g~~~~~l~~~--~~d~vi~d 285 (1089)
+.+++.++ ..+++||+|||+.+|+.||.-. . +-.|+++...-.+.+.+. .-|.|+-+
T Consensus 199 ~~~~~~~~~~~~~~~vI~vGDs~~Dl~ma~g~~~~~~~l~igfln~~~e~~l~~y~~~~Divl~~ 263 (277)
T TIGR01544 199 LRNTEYFNQLKDRSNIILLGDSQGDLRMADGVANVEHILKIGYLNDRVDELLEKYMDSYDIVLVQ 263 (277)
T ss_pred HHHHHHhCccCCcceEEEECcChhhhhHhcCCCcccceEEEEecccCHHHHHHHHHHhCCEEEEC
Confidence 78899998 7899999999999999998766 2 345666655433333332 34544433
No 223
>PTZ00051 thioredoxin; Provisional
Probab=98.98 E-value=1.7e-09 Score=99.67 Aligned_cols=80 Identities=28% Similarity=0.486 Sum_probs=66.5
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
.+++++|+||++||++|+.+.|.|.++++++.+ +.++.|.. +....++++|
T Consensus 17 ~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~--~~~~~vd~---------------------------~~~~~~~~~~ 67 (98)
T PTZ00051 17 QNELVIVDFYAEWCGPCKRIAPFYEECSKEYTK--MVFVKVDV---------------------------DELSEVAEKE 67 (98)
T ss_pred cCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCC--cEEEEEEC---------------------------cchHHHHHHC
Confidence 468999999999999999999999999998763 67777743 3446799999
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCchhhHH
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGHRKDLD 562 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~ 562 (1089)
+|.++|+++++ ++|+++.++.|. ..+++.
T Consensus 68 ~v~~~Pt~~~~-~~g~~~~~~~G~-~~~~~~ 96 (98)
T PTZ00051 68 NITSMPTFKVF-KNGSVVDTLLGA-NDEALK 96 (98)
T ss_pred CCceeeEEEEE-eCCeEEEEEeCC-CHHHhh
Confidence 99999998777 899999999986 445443
No 224
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=98.97 E-value=6.1e-10 Score=109.57 Aligned_cols=74 Identities=32% Similarity=0.384 Sum_probs=63.6
Q ss_pred CCccCCCCCHHHHHHHHHHcCCCCCcEEEEcCCh-hhHHHHHHcCCeEEEEcCCC-C--HHHHhhcCCcEEecCcccC
Q 001380 216 DAFENLKPAPDIFLSASKILNVPTSECIVIEDAL-AGVQAAKAAQMRCIAVTTTL-S--EERLKEASPSLIRKEIGSV 289 (1089)
Q Consensus 216 ~~~~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~-~Di~aA~~aG~~~i~V~~g~-~--~~~l~~~~~d~vi~dl~el 289 (1089)
+....+||++..|+.+++.+|++|++++||||.. .|+.+|++.||+.|.|.+|. . .++-....|+.+.++|.+-
T Consensus 175 ~a~vvGKP~~~fFe~al~~~gv~p~~aVMIGDD~~dDvgGAq~~GMrgilVkTGK~rpsDe~k~~~~p~~~~d~f~~A 252 (262)
T KOG3040|consen 175 EATVVGKPSPFFFESALQALGVDPEEAVMIGDDLNDDVGGAQACGMRGILVKTGKFRPSDEEKPPVPPDLTADNFADA 252 (262)
T ss_pred eEEEecCCCHHHHHHHHHhcCCChHHheEEccccccchhhHhhhcceeEEeeccccCCcccccCCCCcchhhhhHHHH
Confidence 3345699999999999999999999999999999 89999999999999999986 2 2444445788888888876
No 225
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=98.97 E-value=7.9e-10 Score=104.81 Aligned_cols=93 Identities=16% Similarity=0.224 Sum_probs=64.9
Q ss_pred cccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCC-CCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhH
Q 001380 449 RDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKD-MPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNL 527 (1089)
Q Consensus 449 ~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~-~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l 527 (1089)
+..++|+|||+|||+||++|+.+.|.+.+..+.+.. .++..|.+.. + ....
T Consensus 15 A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~---------------------------~-~~~~ 66 (117)
T cd02959 15 AKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLED---------------------------D-EEPK 66 (117)
T ss_pred HHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecC---------------------------C-CCch
Confidence 445789999999999999999999999997765432 3455555521 1 1123
Q ss_pred HHHhCCCc--eeEEEEECCCCcEEEE---ecCCCchhhHHHHHHHHH
Q 001380 528 WRELGVNS--WPTFAVVGPNGKLLAQ---LAGEGHRKDLDDLVEAAL 569 (1089)
Q Consensus 528 ~~~~~v~~--~Pt~~lid~~G~i~~~---~~G~~~~~~l~~~l~~~l 569 (1089)
.+.|++.+ +|+++++|++|+++.+ ..|....+.+...|+.+.
T Consensus 67 ~~~~~~~g~~vPt~~f~~~~Gk~~~~~~~~~~~~~~~~f~~~~~~~~ 113 (117)
T cd02959 67 DEEFSPDGGYIPRILFLDPSGDVHPEIINKKGNPNYKYFYSSAAQVT 113 (117)
T ss_pred hhhcccCCCccceEEEECCCCCCchhhccCCCCccccccCCCHHHHH
Confidence 45677765 9999999999999875 445445555555555444
No 226
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=98.97 E-value=2.6e-09 Score=99.37 Aligned_cols=85 Identities=22% Similarity=0.389 Sum_probs=70.0
Q ss_pred CCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHhC
Q 001380 453 GKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRELG 532 (1089)
Q Consensus 453 gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~~ 532 (1089)
+++++|.||++||++|+...|.+.+++++++.. +.++.+.. +.+.+++++|+
T Consensus 18 ~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~-~~~~~id~---------------------------~~~~~~~~~~~ 69 (103)
T cd03001 18 DDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGI-VKVGAVDA---------------------------DVHQSLAQQYG 69 (103)
T ss_pred CCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCC-ceEEEEEC---------------------------cchHHHHHHCC
Confidence 567999999999999999999999999998753 77777743 44568899999
Q ss_pred CCceeEEEEECCCCcEEEEecCCCchhhHHHHH
Q 001380 533 VNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLV 565 (1089)
Q Consensus 533 v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l 565 (1089)
|.++|++++++++.+....+.|..+.+.+.+++
T Consensus 70 i~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 70 VRGFPTIKVFGAGKNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred CCccCEEEEECCCCcceeecCCCCCHHHHHHHh
Confidence 999999999965545566788888888776654
No 227
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=4e-09 Score=101.09 Aligned_cols=123 Identities=20% Similarity=0.327 Sum_probs=100.4
Q ss_pred CCCCCCCCCCccccCCCCCc--eeecccccCCCEEEEEEe-cCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCCh
Q 001380 424 RKTTPIVPEFPAKLDWLNTA--PLQFRRDLKGKVVVLDFW-TYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNE 500 (1089)
Q Consensus 424 ~~~g~~~P~f~~~~~~~~g~--~~~l~~~~~gk~vll~Fw-a~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~ 500 (1089)
..+.+++|+|+.+. -++|. .++| ++++||+|++.|| ..+.--|..|+-.+.+.+++|++.+.+||++|+ +..
T Consensus 4 ~~~~~p~p~fk~~a-VVdG~f~e~~L-~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~---DS~ 78 (196)
T KOG0852|consen 4 EVVFKPAPDFKGTA-VVDGEFKEIKL-SDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGIST---DSV 78 (196)
T ss_pred cccCCCCCCcceeE-EEcCcceEEee-hhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEec---cch
Confidence 34567779998652 34675 7889 9999999999999 456667999999999999999999999999998 445
Q ss_pred hcHHHHHHHHHHcC----CccceeecCChhHHHHhCCC------ceeEEEEECCCCcEEEE
Q 001380 501 KDLEAIRNAVLRYG----ISHPVVNDGDMNLWRELGVN------SWPTFAVVGPNGKLLAQ 551 (1089)
Q Consensus 501 ~~~~~~~~~~~~~~----~~~~v~~d~~~~l~~~~~v~------~~Pt~~lid~~G~i~~~ 551 (1089)
.+.-+|.+.-++.| +++|++.|.+.+++++|||. .+..+|+||++|.++..
T Consensus 79 fshlAW~ntprk~gGlg~~~iPllsD~~~~IsrdyGvL~~~~G~~lRglfIId~~gi~R~i 139 (196)
T KOG0852|consen 79 FSHLAWINTPRKQGGLGPLNIPLLSDLNHEISRDYGVLKEDEGIALRGLFIIDPDGILRQI 139 (196)
T ss_pred hhhhhHhcCchhhCCcCccccceeeccchhhHHhcCceecCCCcceeeeEEEccccceEEe
Confidence 55666666655543 45999999999999999983 46789999999999875
No 228
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=98.96 E-value=1.2e-09 Score=100.86 Aligned_cols=86 Identities=26% Similarity=0.429 Sum_probs=72.3
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcC-CCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHH
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYK-DMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRE 530 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~-~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~ 530 (1089)
+++++||.||++||++|+...|.++++.+.++ ..++.++.|.. +.+..+++.
T Consensus 14 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~---------------------------~~~~~~~~~ 66 (101)
T cd02961 14 DSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDC---------------------------TANNDLCSE 66 (101)
T ss_pred CCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeec---------------------------cchHHHHHh
Confidence 45699999999999999999999999999985 44688888843 345789999
Q ss_pred hCCCceeEEEEECCCCcEEEEecCCCchhhHHHH
Q 001380 531 LGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDL 564 (1089)
Q Consensus 531 ~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~ 564 (1089)
|+|..+|++++++++|+...++.|..+.+.+.++
T Consensus 67 ~~i~~~Pt~~~~~~~~~~~~~~~g~~~~~~i~~~ 100 (101)
T cd02961 67 YGVRGYPTIKLFPNGSKEPVKYEGPRTLESLVEF 100 (101)
T ss_pred CCCCCCCEEEEEcCCCcccccCCCCcCHHHHHhh
Confidence 9999999999998887777888888777766554
No 229
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=98.96 E-value=8.5e-09 Score=107.77 Aligned_cols=134 Identities=18% Similarity=0.230 Sum_probs=107.2
Q ss_pred CCccccCCCCCceeecccccCCCEEEEEEecCCCcc-hhhhhhhHHHHHHHcC---CCCEEEEEEeCCCCCChhcHHHHH
Q 001380 432 EFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCIN-CMHVLPDLEFLEKKYK---DMPFTVVGVHSAKFDNEKDLEAIR 507 (1089)
Q Consensus 432 ~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~-C~~~~p~l~~l~~~~~---~~~v~vi~v~~~~~~~~~~~~~~~ 507 (1089)
+|+++ +.+|+.+++ .+++||++||+|..+.||. |..++..|.++.++.. ..++.++.|+++ +..|+++.++
T Consensus 49 ~f~l~--d~~G~~~~~-~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvD--PerDtp~~lk 123 (207)
T COG1999 49 DFELT--DQDGKPFTL-KDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVD--PERDTPEVLK 123 (207)
T ss_pred ceeee--cCCCCEeec-cccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEEC--CCCCCHHHHH
Confidence 67755 449999999 9999999999999999998 9999999999999987 357889999886 4456788889
Q ss_pred HHHH-HcCCccceeec---CChhHHHHhCCCc---------------eeEEEEECCCCcEEEEecCCCchhhHHHHHHHH
Q 001380 508 NAVL-RYGISHPVVND---GDMNLWRELGVNS---------------WPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAA 568 (1089)
Q Consensus 508 ~~~~-~~~~~~~v~~d---~~~~l~~~~~v~~---------------~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~ 568 (1089)
+++. ...-.|.-+.. ...+++++|+|.. ...+|+||++|+++..+.+...++.+.+.|+.+
T Consensus 124 ~Y~~~~~~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~~~~~~i~~~l~~l 203 (207)
T COG1999 124 KYAELNFDPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYGEPPEEIAADLKKL 203 (207)
T ss_pred HHhcccCCCCeeeeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCCCChHHHHHHHHHH
Confidence 9988 44444554443 3456788887752 346899999999999988777788888888777
Q ss_pred HH
Q 001380 569 LL 570 (1089)
Q Consensus 569 l~ 570 (1089)
++
T Consensus 204 ~~ 205 (207)
T COG1999 204 LK 205 (207)
T ss_pred hh
Confidence 65
No 230
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.96 E-value=1.8e-07 Score=107.40 Aligned_cols=203 Identities=18% Similarity=0.252 Sum_probs=135.9
Q ss_pred CCeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEEEEECCCCe
Q 001380 612 NNRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNDT 690 (1089)
Q Consensus 612 ~g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~ 690 (1089)
.+-+||++.+.++|.++|.+ .+.+.+|..++. -+.++++.++|+++||++. ++.|.++|+.+++
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~--------------~h~~~~~s~Dgr~~yv~~r-dg~vsviD~~~~~ 69 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGATNKVVARIPTGGA--------------PHAGLKFSPDGRYLYVANR-DGTVSVIDLATGK 69 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT-SEEEEEE-STT--------------EEEEEE-TT-SSEEEEEET-TSEEEEEETTSSS
T ss_pred ccEEEEEecCCCEEEEEECCCCeEEEEEcCCCC--------------ceeEEEecCCCCEEEEEcC-CCeEEEEECCccc
Confidence 45567999999999999987 677888876521 2456788999999999985 5799999998866
Q ss_pred EEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEE-EEeCCCccccCCCCCCCC
Q 001380 691 VRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTR-AFSGDGYERNLNGSSSLN 769 (1089)
Q Consensus 691 v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~-~~~g~g~~~~~~g~~~~~ 769 (1089)
+..-...| ..|.+++++++|+++|+++...+++..+|.++.+.. .+...+... .
T Consensus 70 ~v~~i~~G-----------------~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~--------~ 124 (369)
T PF02239_consen 70 VVATIKVG-----------------GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPV--------D 124 (369)
T ss_dssp EEEEEE-S-----------------SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-T--------T
T ss_pred EEEEEecC-----------------CCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccc--------c
Confidence 44333333 279999999999999999999999999998876544 333211100 0
Q ss_pred ccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeE---EEecCCCCCCCCccccCCCCCccccccccCceEEEEcc
Q 001380 770 TSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSR---LLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAK 846 (1089)
Q Consensus 770 ~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~---~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~ 846 (1089)
..-..+.+|..++.....+++-.+++.|..++..+.... .+.. -..|.+..+|+
T Consensus 125 ~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~-----------------------g~~~~D~~~dp 181 (369)
T PF02239_consen 125 GPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKV-----------------------GRFPHDGGFDP 181 (369)
T ss_dssp TS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE-------------------------TTEEEEEE-T
T ss_pred ccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecc-----------------------cccccccccCc
Confidence 011234577777776556667778899999987643211 1111 13688999999
Q ss_pred CCc-EEEEeCCCCEEEEEeCCCCeEEEEeccC
Q 001380 847 NGQ-IYVADSYNHKIKKLDPASNRVSTLAGIG 877 (1089)
Q Consensus 847 ~G~-lyVaD~~n~~I~~~d~~~~~v~t~~g~g 877 (1089)
+|+ ++++....++|.++|..++.+......|
T Consensus 182 dgry~~va~~~sn~i~viD~~~~k~v~~i~~g 213 (369)
T PF02239_consen 182 DGRYFLVAANGSNKIAVIDTKTGKLVALIDTG 213 (369)
T ss_dssp TSSEEEEEEGGGTEEEEEETTTTEEEEEEE-S
T ss_pred ccceeeecccccceeEEEeeccceEEEEeecc
Confidence 996 6787888889999999988776665543
No 231
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.96 E-value=2.3e-07 Score=99.25 Aligned_cols=215 Identities=17% Similarity=0.268 Sum_probs=125.3
Q ss_pred CCcceeEEeeCCCEEEEEECCCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECC
Q 001380 657 NRPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAG 736 (1089)
Q Consensus 657 ~~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~ 736 (1089)
..+.||+++|+.+.||....+...|..+++++..++++.-.| +..+-||++-.++ .+.+++..
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g----------------~~D~EgI~y~g~~-~~vl~~Er 84 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDG----------------FGDYEGITYLGNG-RYVLSEER 84 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS-----------------SSEEEEEE-STT-EEEEEETT
T ss_pred CCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCC----------------CCCceeEEEECCC-EEEEEEcC
Confidence 468999999998889988888899999999888787776433 2378899997554 88888888
Q ss_pred CcEEEEEECCC--CeE-----EEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCC-eEEEEEcCC--CC
Q 001380 737 QHQIWEHSTVD--GVT-----RAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESS-SIRALNLKT--GG 806 (1089)
Q Consensus 737 ~~~I~~~~~~~--g~~-----~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~-~I~~~~~~~--~~ 806 (1089)
.+++..+.... ..+ ..+. .+... ..+. .--|||+|+.+++||++-...- .|+.++... ..
T Consensus 85 ~~~L~~~~~~~~~~~~~~~~~~~~~-l~~~~------~~N~---G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~ 154 (248)
T PF06977_consen 85 DQRLYIFTIDDDTTSLDRADVQKIS-LGFPN------KGNK---GFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFD 154 (248)
T ss_dssp TTEEEEEEE----TT--EEEEEEEE----S---------SS-----EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS-
T ss_pred CCcEEEEEEeccccccchhhceEEe-ccccc------CCCc---ceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccc
Confidence 88888777622 221 1121 01000 0011 2359999999889999854322 455555411 11
Q ss_pred eEEEecCCCCCCCCccccCCCCCccccccccCceEEEEcc-CCcEEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCc
Q 001380 807 SRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAK-NGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGA 885 (1089)
Q Consensus 807 ~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~-~G~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~ 885 (1089)
...... .+-......+..|.++++++ .|++||-...+++|..+|.+++.+..+.-.... .
T Consensus 155 ~~~~~~--------------~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~-----~ 215 (248)
T PF06977_consen 155 LFVSDD--------------QDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGF-----H 215 (248)
T ss_dssp -EEEE---------------HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTG-----G
T ss_pred eeeccc--------------cccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcc-----c
Confidence 111100 00001223355699999997 479999999999999999887777766532110 0
Q ss_pred ccccccCCCceEEEccCCcEEEEECCCCEEEEE
Q 001380 886 ALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYL 918 (1089)
Q Consensus 886 ~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~ 918 (1089)
+....+..|.|||+|++|+|||+.-- |+..+|
T Consensus 216 gl~~~~~QpEGIa~d~~G~LYIvsEp-Nlfy~f 247 (248)
T PF06977_consen 216 GLSKDIPQPEGIAFDPDGNLYIVSEP-NLFYRF 247 (248)
T ss_dssp G-SS---SEEEEEE-TT--EEEEETT-TEEEEE
T ss_pred CcccccCCccEEEECCCCCEEEEcCC-ceEEEe
Confidence 22346788999999999999999864 466655
No 232
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=98.93 E-value=7.5e-09 Score=98.79 Aligned_cols=96 Identities=19% Similarity=0.261 Sum_probs=69.6
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCC--ChhcHHHHHHHHHHcCCccceeecCChhHHH
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFD--NEKDLEAIRNAVLRYGISHPVVNDGDMNLWR 529 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~ 529 (1089)
.|+.++|+|+++|||+|+...|.|.++.++.+ +.++-|+++... ...+.+++.++.+++++.
T Consensus 22 ~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~~---~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~------------- 85 (122)
T TIGR01295 22 KKETATFFIGRKTCPYCRKFSGTLSGVVAQTK---APIYYIDSENNGSFEMSSLNDLTAFRSRFGIP------------- 85 (122)
T ss_pred cCCcEEEEEECCCChhHHHHhHHHHHHHHhcC---CcEEEEECCCccCcCcccHHHHHHHHHHcCCc-------------
Confidence 46789999999999999999999999999832 445666543111 112233556666655542
Q ss_pred HhCCCceeEEEEECCCCcEEEEecCC-CchhhHHHHH
Q 001380 530 ELGVNSWPTFAVVGPNGKLLAQLAGE-GHRKDLDDLV 565 (1089)
Q Consensus 530 ~~~v~~~Pt~~lid~~G~i~~~~~G~-~~~~~l~~~l 565 (1089)
++|.++||++++ ++|+.+.++.|. .+.+++++++
T Consensus 86 -~~i~~~PT~v~~-k~Gk~v~~~~G~~~~~~~l~~~~ 120 (122)
T TIGR01295 86 -TSFMGTPTFVHI-TDGKQVSVRCGSSTTAQELQDIA 120 (122)
T ss_pred -ccCCCCCEEEEE-eCCeEEEEEeCCCCCHHHHHHHh
Confidence 367889999999 899999999884 4577776664
No 233
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=98.93 E-value=2.4e-08 Score=96.31 Aligned_cols=185 Identities=17% Similarity=0.238 Sum_probs=118.5
Q ss_pred CceEEEEecCCcccCCch---H----HHHHHHHHHHHcCCCCC----HHhHhhhcCCCH--HHHHHHHHhhcCCCCCCHH
Q 001380 78 KVSAVLFDMDGVLCNSEE---P----SRRAAVDVFAEMGVEVT----VEDFLPFMGTGE--ANFLGGVASVKGVKGFDSE 144 (1089)
Q Consensus 78 ~~k~ViFD~DGTL~d~~~---~----~~~a~~~~~~~~g~~~~----~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 144 (1089)
|.++++.|+.||+..-.- . ..+.+.+..++.--+.. .+++....+... +.....+.....-+ ..+
T Consensus 3 m~kaiLlDIEGTv~~iSFVkdvlFPYa~~~lp~fv~e~~e~~~v~~~v~~v~~e~g~~~s~E~lva~~~~wiaed--~K~ 80 (229)
T COG4229 3 MVKAILLDIEGTVSPISFVKDVLFPYAARKLPDFVRENTEDSEVKKIVDEVLSEFGIANSEEALVALLLEWIAED--SKD 80 (229)
T ss_pred chhhheeeccccccchhHHHhhhhHHHHHHhHHHHHhhccCChhhHHHHHHHHHhCccchHHHHHHHHHHHHhcc--ccc
Confidence 468999999999985331 1 12223333333222111 234444444432 22222222222111 122
Q ss_pred HHHHHHHH-HHHHHhcC-CCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHC---CCCCCCccEEEEcCCcc
Q 001380 145 AAKKRFFE-IYLDKYAK-PNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAA---GLPVSMFDAIVSADAFE 219 (1089)
Q Consensus 145 ~~~~~~~~-~~~~~~~~-~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~---gl~~~~fd~i~~~~~~~ 219 (1089)
...++++- ++..-|.. ....+++|++.+.|++.++.|++++|.|+++....+-..... .+ ..+|+..+... .
T Consensus 81 t~lK~lQG~iWa~Gy~sgelkahlypDav~~ik~wk~~g~~vyiYSSGSV~AQkL~Fghs~agdL-~~lfsGyfDtt-i- 157 (229)
T COG4229 81 TPLKALQGMIWAHGYESGELKAHLYPDAVQAIKRWKALGMRVYIYSSGSVKAQKLFFGHSDAGDL-NSLFSGYFDTT-I- 157 (229)
T ss_pred chHHHHHhHHHHhccccCccccccCHhHHHHHHHHHHcCCcEEEEcCCCchhHHHhhcccccccH-Hhhhcceeecc-c-
Confidence 22233333 23222322 225689999999999999999999999999887766665543 33 25666665542 2
Q ss_pred CCCCCHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcC
Q 001380 220 NLKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTT 267 (1089)
Q Consensus 220 ~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~ 267 (1089)
-.|-...-|.++++..|++|.+++|+.|....+.+|+.+||+++++.+
T Consensus 158 G~KrE~~SY~kIa~~iGl~p~eilFLSDn~~EL~AA~~vGl~t~l~~R 205 (229)
T COG4229 158 GKKRESQSYAKIAGDIGLPPAEILFLSDNPEELKAAAGVGLATGLAVR 205 (229)
T ss_pred cccccchhHHHHHHhcCCCchheEEecCCHHHHHHHHhcchheeeeec
Confidence 357778899999999999999999999999999999999999999876
No 234
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=98.92 E-value=2.1e-09 Score=101.67 Aligned_cols=72 Identities=28% Similarity=0.416 Sum_probs=62.1
Q ss_pred CCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHhC
Q 001380 453 GKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRELG 532 (1089)
Q Consensus 453 gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~~ 532 (1089)
++++||+||++||++|+.+.|.|++++++|.+ +.++-|.. +.. .++++|+
T Consensus 24 ~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~--v~f~~vd~---------------------------~~~-~l~~~~~ 73 (113)
T cd02957 24 GTRVVVHFYEPGFPRCKILDSHLEELAAKYPE--TKFVKINA---------------------------EKA-FLVNYLD 73 (113)
T ss_pred CCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC--cEEEEEEc---------------------------hhh-HHHHhcC
Confidence 58999999999999999999999999999874 56666632 333 8899999
Q ss_pred CCceeEEEEECCCCcEEEEecCC
Q 001380 533 VNSWPTFAVVGPNGKLLAQLAGE 555 (1089)
Q Consensus 533 v~~~Pt~~lid~~G~i~~~~~G~ 555 (1089)
|.++|+++++ ++|+.+.+..|.
T Consensus 74 i~~~Pt~~~f-~~G~~v~~~~G~ 95 (113)
T cd02957 74 IKVLPTLLVY-KNGELIDNIVGF 95 (113)
T ss_pred CCcCCEEEEE-ECCEEEEEEecH
Confidence 9999999999 899999998874
No 235
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=98.91 E-value=1.6e-08 Score=112.23 Aligned_cols=127 Identities=11% Similarity=0.084 Sum_probs=86.1
Q ss_pred CCccHHHHHHHHHhCCCeEEEEcCCC-----hHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCC
Q 001380 166 GFPGALELINQCKSKGLKVAVASSAD-----RIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTS 240 (1089)
Q Consensus 166 ~~pG~~~lL~~Lk~~Gi~vaIvSn~~-----~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~ 240 (1089)
.++++.++++.++..+..+.++++.. ....+.+.+.+++. ......-.-+-...+..|+..++.+++++|++++
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~ei~~~~~~K~~~l~~l~~~~gi~~~ 216 (272)
T PRK10530 138 TFTQVDSLAQAARQVNAIWKFALTHEDLPQLQHFAKHVEHELGLE-CEWSWHDQVDIARKGNSKGKRLTQWVEAQGWSMK 216 (272)
T ss_pred ceEEcccHHHHHhhcCCcEEEEEecCCHHHHHHHHHHHhhhcCce-EEEecCceEEEecCCCChHHHHHHHHHHcCCCHH
Confidence 35677788888877777777777643 12333444444542 1000000012223344577899999999999999
Q ss_pred cEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccCCHHHHHhc
Q 001380 241 ECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDILTG 297 (1089)
Q Consensus 241 ~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~i~~ll~~ 297 (1089)
++++|||+.||+.|++.+|+ +|.+|...++++ ..|++++.+-.+=.+..+|..
T Consensus 217 e~i~~GD~~NDi~m~~~ag~---~vamgna~~~lk-~~Ad~v~~~n~~dGv~~~l~~ 269 (272)
T PRK10530 217 NVVAFGDNFNDISMLEAAGL---GVAMGNADDAVK-ARADLVIGDNTTPSIAEFIYS 269 (272)
T ss_pred HeEEeCCChhhHHHHHhcCc---eEEecCchHHHH-HhCCEEEecCCCCcHHHHHHH
Confidence 99999999999999999995 555666566764 579999988877766666643
No 236
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=98.90 E-value=5.8e-09 Score=98.42 Aligned_cols=89 Identities=19% Similarity=0.100 Sum_probs=70.0
Q ss_pred CCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHhC
Q 001380 453 GKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRELG 532 (1089)
Q Consensus 453 gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~~ 532 (1089)
++.++|+||++||++|+.+.|.|.++.+++. .+.++-|.. |...++++.|+
T Consensus 22 ~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~--~i~~~~vd~---------------------------d~~~~l~~~~~ 72 (113)
T cd02975 22 PVDLVVFSSKEGCQYCEVTKQLLEELSELSD--KLKLEIYDF---------------------------DEDKEKAEKYG 72 (113)
T ss_pred CeEEEEEeCCCCCCChHHHHHHHHHHHHhcC--ceEEEEEeC---------------------------CcCHHHHHHcC
Confidence 4568899999999999999999999998873 366666643 44568999999
Q ss_pred CCceeEEEEECCCCcEE-EEecCCCchhhHHHHHHHHHH
Q 001380 533 VNSWPTFAVVGPNGKLL-AQLAGEGHRKDLDDLVEAALL 570 (1089)
Q Consensus 533 v~~~Pt~~lid~~G~i~-~~~~G~~~~~~l~~~l~~~l~ 570 (1089)
|.++|++++++.+++.- .++.|....+++.++|..++.
T Consensus 73 v~~vPt~~i~~~g~~~~~~~~~G~~~~~el~~~i~~i~~ 111 (113)
T cd02975 73 VERVPTTIFLQDGGKDGGIRYYGLPAGYEFASLIEDIVR 111 (113)
T ss_pred CCcCCEEEEEeCCeecceEEEEecCchHHHHHHHHHHHh
Confidence 99999999996433221 157788888899999888764
No 237
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=98.90 E-value=3.8e-09 Score=105.52 Aligned_cols=108 Identities=18% Similarity=0.281 Sum_probs=76.8
Q ss_pred CCCCccHHHHHHHHHhCCCeEEEEcC-CChHhHHHHHHHCCCC---------CCCccEEEEcCCccCCCCCHHHHHHHHH
Q 001380 164 GIGFPGALELINQCKSKGLKVAVASS-ADRIKVDANLAAAGLP---------VSMFDAIVSADAFENLKPAPDIFLSASK 233 (1089)
Q Consensus 164 ~~~~pG~~~lL~~Lk~~Gi~vaIvSn-~~~~~~~~~l~~~gl~---------~~~fd~i~~~~~~~~~KP~~~~~~~~l~ 233 (1089)
..++|++.+.|+.|+++|++++++|. ..++.++.+|+.+++. .++|+..- ..++ .|...|+.+.+
T Consensus 44 v~lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~~L~~l~i~~~~~~~~~~~~~F~~~e----I~~g-sK~~Hf~~i~~ 118 (169)
T PF12689_consen 44 VSLYPDVPEILQELKERGVKLAVASRTDEPDWARELLKLLEIDDADGDGVPLIEYFDYLE----IYPG-SKTTHFRRIHR 118 (169)
T ss_dssp E---TTHHHHHHHHHHCT--EEEEE--S-HHHHHHHHHHTT-C----------CCECEEE----ESSS--HHHHHHHHHH
T ss_pred EEeCcCHHHHHHHHHHCCCEEEEEECCCChHHHHHHHHhcCCCccccccccchhhcchhh----eecC-chHHHHHHHHH
Confidence 37899999999999999999999996 4678999999999994 14555422 3333 77899999999
Q ss_pred HcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhh
Q 001380 234 ILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKE 276 (1089)
Q Consensus 234 ~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~ 276 (1089)
+.|++.++++++.|...++....+.|+.|+.|..|.+.+.+.+
T Consensus 119 ~tgI~y~eMlFFDDe~~N~~~v~~lGV~~v~v~~Glt~~~~~~ 161 (169)
T PF12689_consen 119 KTGIPYEEMLFFDDESRNIEVVSKLGVTCVLVPDGLTWDEFER 161 (169)
T ss_dssp HH---GGGEEEEES-HHHHHHHHTTT-EEEE-SSS--HHHHHH
T ss_pred hcCCChhHEEEecCchhcceeeEecCcEEEEeCCCCCHHHHHH
Confidence 9999999999999999999999999999999999988777654
No 238
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=98.90 E-value=1.2e-06 Score=92.73 Aligned_cols=237 Identities=16% Similarity=0.117 Sum_probs=144.6
Q ss_pred CCCCCCCCCceEEEeecCCeEEEEeCCCCEEEEEeCC-----CCE---EEEEecCCCCCCCCCCCCccccCCcceeEEee
Q 001380 595 LFTSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLD-----GNF---IVQIGSSGEEGLRDGSFDDATFNRPQGLAYNA 666 (1089)
Q Consensus 595 ~~~~~l~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~-----g~~---~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~ 666 (1089)
.....|..|+||++.| .+.+||+|.+++....++.+ |.. +.+|...+. ...-..|.|+++..
T Consensus 17 ~tDp~L~N~WGia~~p-~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~---------~~~~~~PTGiVfN~ 86 (336)
T TIGR03118 17 IVDPGLRNAWGLSYRP-GGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPP---------LAAEGTPTGQVFNG 86 (336)
T ss_pred ccCccccccceeEecC-CCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCC---------CCCCCCccEEEEeC
Confidence 4456899999999998 88999999999999999876 332 334443211 01123689999975
Q ss_pred CCCEEEEEECCCC--EEEEEECCCCeEEEEecCCCCC---CCCCCCCcccccccCCceeEEEecC--CCEEEEEECCCcE
Q 001380 667 KKNLLYVADTENH--ALREIDFVNDTVRTLAGNGTKG---SDYQGGEKGTSQLLNSPWDVCYKPI--NEKVYIAMAGQHQ 739 (1089)
Q Consensus 667 ~g~~lyVaD~~n~--~I~~~d~~~g~v~~~ag~g~~~---~~~~~~~~~~~~~l~~P~~la~~~~--g~~lyvad~~~~~ 739 (1089)
... .-|+..+.. ....+-.++|++.-+...-... ....- ......-.-=.|+|+... ++.||.+|..+++
T Consensus 87 ~~~-F~vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~--~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~ 163 (336)
T TIGR03118 87 SDT-FVVSGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIV--VDASQQGNVYKGLAVGPTGGGDYLYAANFRQGR 163 (336)
T ss_pred CCc-eEEcCCCcccceeEEEEeCCceEEeecCcCCcccccccEEE--EccCCCcceeeeeEEeecCCCceEEEeccCCCc
Confidence 444 333332211 2234555566666665321110 00000 000000012246777643 5799999999999
Q ss_pred EEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEe-------------CCCCeEEEEEcCCCC
Q 001380 740 IWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVAD-------------SESSSIRALNLKTGG 806 (1089)
Q Consensus 740 I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad-------------~~~~~I~~~~~~~~~ 806 (1089)
|-+||..-..+. ..+. .. + +...+.+ -|.+|..-. ++|||+- .+.+.|-+|++++..
T Consensus 164 IDVFd~~f~~~~-~~g~--F~--D--P~iPagy-APFnIqnig--~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l 233 (336)
T TIGR03118 164 IDVFKGSFRPPP-LPGS--FI--D--PALPAGY-APFNVQNLG--GTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQL 233 (336)
T ss_pred eEEecCcccccc-CCCC--cc--C--CCCCCCC-CCcceEEEC--CeEEEEEEecCCcccccccCCCcceEEEEcCCCcE
Confidence 999985543332 1221 11 1 1122333 477887553 4899864 234578888888777
Q ss_pred eEEEecCCCCCCCCccccCCCCCccccccccCceEEEEcc------CCcEEEEeCCCCEEEEEeCCC-CeEEEEe
Q 001380 807 SRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAK------NGQIYVADSYNHKIKKLDPAS-NRVSTLA 874 (1089)
Q Consensus 807 ~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~------~G~lyVaD~~n~~I~~~d~~~-~~v~t~~ 874 (1089)
++.++.+ ..|+.|+||++.| .|.|+|.+.+.++|..||+.+ ..+-.+.
T Consensus 234 ~~r~as~--------------------g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~ 288 (336)
T TIGR03118 234 LRRVASS--------------------GRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLL 288 (336)
T ss_pred EEEeccC--------------------CcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeec
Confidence 7666433 2389999999976 578999999999999999974 4454444
No 239
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=98.90 E-value=1.2e-06 Score=101.28 Aligned_cols=180 Identities=18% Similarity=0.282 Sum_probs=105.4
Q ss_pred CCCCCCCCCCceEEEeecCCeEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeC------
Q 001380 594 RLFTSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAK------ 667 (1089)
Q Consensus 594 ~~~~~~l~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~------ 667 (1089)
+.+++.|.+|++|++.+ +|+|||+....++|++++.++.....+... ... ........+.||+++|+
T Consensus 23 ~~va~GL~~Pw~maflP-DG~llVtER~~G~I~~v~~~~~~~~~~~~l--~~v----~~~~ge~GLlglal~PdF~~~~~ 95 (454)
T TIGR03606 23 KVLLSGLNKPWALLWGP-DNQLWVTERATGKILRVNPETGEVKVVFTL--PEI----VNDAQHNGLLGLALHPDFMQEKG 95 (454)
T ss_pred EEEECCCCCceEEEEcC-CCeEEEEEecCCEEEEEeCCCCceeeeecC--Cce----eccCCCCceeeEEECCCccccCC
Confidence 35678999999999998 889999998789999998764332222111 000 00011346799999965
Q ss_pred CCEEEEEEC---------CCCEEEEEECCCC--e---EEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEE
Q 001380 668 KNLLYVADT---------ENHALREIDFVND--T---VRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIA 733 (1089)
Q Consensus 668 g~~lyVaD~---------~n~~I~~~d~~~g--~---v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyva 733 (1089)
+++|||+-+ ...+|.++.++.. . .+.+.. +... ..-.+-..|+|+|+| .|||+
T Consensus 96 n~~lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~-~lP~-----------~~~H~GgrI~FgPDG-~LYVs 162 (454)
T TIGR03606 96 NPYVYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLA-GLPA-----------GNDHNGGRLVFGPDG-KIYYT 162 (454)
T ss_pred CcEEEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEe-cCCC-----------CCCcCCceEEECCCC-cEEEE
Confidence 356999842 1457888776421 1 122221 0000 001234578899988 79997
Q ss_pred ECCCcE----------E-E-----------EEECCCCeEEEEeCCCccc--cC--CCCC--CCCccccCCceEEEcCCCC
Q 001380 734 MAGQHQ----------I-W-----------EHSTVDGVTRAFSGDGYER--NL--NGSS--SLNTSFAQPSGISLSPDFM 785 (1089)
Q Consensus 734 d~~~~~----------I-~-----------~~~~~~g~~~~~~g~g~~~--~~--~g~~--~~~~~~~~P~glav~~~g~ 785 (1089)
....+. . . ..+...|++.++.-.|... |. .+.. -...++.+|.|++++++|
T Consensus 163 ~GD~g~~~~~n~~~~~~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~RNp~Gla~dp~G- 241 (454)
T TIGR03606 163 IGEQGRNQGANFFLPNQAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGHRNPQGLAFTPDG- 241 (454)
T ss_pred ECCCCCCCcccccCcchhccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEeccccceeEECCCC-
Confidence 544311 0 0 1112234555555444211 10 1110 124578999999999976
Q ss_pred EEEEEeCCC
Q 001380 786 EIYVADSES 794 (1089)
Q Consensus 786 ~lyvad~~~ 794 (1089)
.||++|.+-
T Consensus 242 ~Lw~~e~Gp 250 (454)
T TIGR03606 242 TLYASEQGP 250 (454)
T ss_pred CEEEEecCC
Confidence 999999765
No 240
>PTZ00445 p36-lilke protein; Provisional
Probab=98.90 E-value=7.2e-09 Score=104.66 Aligned_cols=102 Identities=19% Similarity=0.175 Sum_probs=86.1
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCCh---------------HhHHHHHHHCCCCCCCccEEEEcCC-----------c
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSADR---------------IKVDANLAAAGLPVSMFDAIVSADA-----------F 218 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~---------------~~~~~~l~~~gl~~~~fd~i~~~~~-----------~ 218 (1089)
.+.|....++..|++.|++++|+|=.+. ++++..|+..+.. .-++.+++... .
T Consensus 75 ~~tpefk~~~~~l~~~~I~v~VVTfSd~~~~~~~~~~~~Isg~~li~~~lk~s~~~-~~i~~~~~yyp~~w~~p~~y~~~ 153 (219)
T PTZ00445 75 SVTPDFKILGKRLKNSNIKISVVTFSDKELIPSENRPRYISGDRMVEAALKKSKCD-FKIKKVYAYYPKFWQEPSDYRPL 153 (219)
T ss_pred cCCHHHHHHHHHHHHCCCeEEEEEccchhhccccCCcceechHHHHHHHHHhcCcc-ceeeeeeeeCCcccCChhhhhhh
Confidence 4678889999999999999999997544 3678888877775 44566665432 3
Q ss_pred cCCCCCHHH--H--HHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcC
Q 001380 219 ENLKPAPDI--F--LSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTT 267 (1089)
Q Consensus 219 ~~~KP~~~~--~--~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~ 267 (1089)
+..||+|++ | +++++++|+.|+++++|.|...++++|++.|+.++.+..
T Consensus 154 gl~KPdp~iK~yHle~ll~~~gl~peE~LFIDD~~~NVeaA~~lGi~ai~f~~ 206 (219)
T PTZ00445 154 GLDAPMPLDKSYHLKQVCSDFNVNPDEILFIDDDMNNCKNALKEGYIALHVTG 206 (219)
T ss_pred cccCCCccchHHHHHHHHHHcCCCHHHeEeecCCHHHHHHHHHCCCEEEEcCC
Confidence 568999999 9 999999999999999999999999999999999999965
No 241
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=1.1e-08 Score=98.02 Aligned_cols=141 Identities=23% Similarity=0.324 Sum_probs=112.4
Q ss_pred CCCCCCCccccCCCCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCCh--hcHH
Q 001380 427 TPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNE--KDLE 504 (1089)
Q Consensus 427 g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~--~~~~ 504 (1089)
...+-+|+. .+++|+.++| +.++||++|+.--||-|+.-.....+|+.|+++|++.|++|++.-+..|..+ .+.+
T Consensus 11 ~~siydf~~--~d~~G~~v~l-~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQFg~QEp~~n~ 87 (171)
T KOG1651|consen 11 KGSIYDFSA--KDLDGEYVSL-SQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQFGNQEPGSNE 87 (171)
T ss_pred hcceeeeEE--ecCCCCCccH-HHhCCeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEeccccccCcCCCCcH
Confidence 344567775 4669999999 9999999999999999999998888999999999999999999999988765 3556
Q ss_pred HHHHHH-HHcCCccceee--c----CChhHHHHh----------CCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHH
Q 001380 505 AIRNAV-LRYGISHPVVN--D----GDMNLWREL----------GVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEA 567 (1089)
Q Consensus 505 ~~~~~~-~~~~~~~~v~~--d----~~~~l~~~~----------~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~ 567 (1089)
++..++ .+++..||+.. | ....+++-+ .|.+--+-||||++|+++.++.-...+.+++..|+.
T Consensus 88 Ei~~f~~~r~~~~f~if~KidVNG~~~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~Ry~ptt~p~~~~~dIe~ 167 (171)
T KOG1651|consen 88 EILNFVKVRYGAEFPIFQKIDVNGDNADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKRFSPTTSPLDIEKDIEK 167 (171)
T ss_pred HHHHHHHhccCCCCccEeEEecCCCCCchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEeeCCCCCccccchhHHH
Confidence 677776 67999887652 1 233455433 244445889999999999998887778888888877
Q ss_pred HHH
Q 001380 568 ALL 570 (1089)
Q Consensus 568 ~l~ 570 (1089)
+|.
T Consensus 168 lL~ 170 (171)
T KOG1651|consen 168 LLA 170 (171)
T ss_pred Hhc
Confidence 764
No 242
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=98.88 E-value=5.5e-07 Score=95.24 Aligned_cols=230 Identities=17% Similarity=0.180 Sum_probs=145.1
Q ss_pred cccCCcceeEEeeCCCEEEEEECCCCEEEEEECC-----C-C--eEEEEec-CCCCCCCCCCCCcccccccCCceeEEEe
Q 001380 654 ATFNRPQGLAYNAKKNLLYVADTENHALREIDFV-----N-D--TVRTLAG-NGTKGSDYQGGEKGTSQLLNSPWDVCYK 724 (1089)
Q Consensus 654 ~~f~~P~gla~d~~g~~lyVaD~~n~~I~~~d~~-----~-g--~v~~~ag-~g~~~~~~~~~~~~~~~~l~~P~~la~~ 724 (1089)
..+.+|.||++.|.+- +||+|.+.+....+|.. + . .+-++.. .+. ..-..|.|++++
T Consensus 20 p~L~N~WGia~~p~~~-~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~-------------~~~~~PTGiVfN 85 (336)
T TIGR03118 20 PGLRNAWGLSYRPGGP-FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPL-------------AAEGTPTGQVFN 85 (336)
T ss_pred ccccccceeEecCCCC-EEEecCCcceEEeecCCcccccCCccceEEEecCCCCC-------------CCCCCccEEEEe
Confidence 3467899999999876 99999999988888865 1 1 1222221 111 112379999998
Q ss_pred cCCCEEEEEECCCc--EEEEEECCCCeEEEEeCCCccc-------cCCCCCCCCccccCCceEEEcCC--CCEEEEEeCC
Q 001380 725 PINEKVYIAMAGQH--QIWEHSTVDGVTRAFSGDGYER-------NLNGSSSLNTSFAQPSGISLSPD--FMEIYVADSE 793 (1089)
Q Consensus 725 ~~g~~lyvad~~~~--~I~~~~~~~g~~~~~~g~g~~~-------~~~g~~~~~~~~~~P~glav~~~--g~~lyvad~~ 793 (1089)
... .+-|+..+.. ..+.|..++|++.-|...-... -.+.+ ..-+--.|||+... ++.||.+|..
T Consensus 86 ~~~-~F~vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s----~~gavYkGLAi~~~~~~~~LYaadF~ 160 (336)
T TIGR03118 86 GSD-TFVVSGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDAS----QQGNVYKGLAVGPTGGGDYLYAANFR 160 (336)
T ss_pred CCC-ceEEcCCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccC----CCcceeeeeEEeecCCCceEEEeccC
Confidence 654 3334432222 3356777788888777432211 11111 11122348888743 5699999999
Q ss_pred CCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccCCcEEEE-------------eCCCCEE
Q 001380 794 SSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVA-------------DSYNHKI 860 (1089)
Q Consensus 794 ~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~lyVa-------------D~~n~~I 860 (1089)
+++|.+|+.+=..+ .+.+. |-+..-++. -.|.+|.-- .|+|||+ ..+.+.|
T Consensus 161 ~g~IDVFd~~f~~~-~~~g~----------F~DP~iPag----yAPFnIqni-g~~lyVtYA~qd~~~~d~v~G~G~G~V 224 (336)
T TIGR03118 161 QGRIDVFKGSFRPP-PLPGS----------FIDPALPAG----YAPFNVQNL-GGTLYVTYAQQDADRNDEVAGAGLGYV 224 (336)
T ss_pred CCceEEecCccccc-cCCCC----------ccCCCCCCC----CCCcceEEE-CCeEEEEEEecCCcccccccCCCcceE
Confidence 99999997542222 11221 111111111 135556433 5678876 2456789
Q ss_pred EEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEcc------CCcEEEEECCCCEEEEEeCCCCCceEEEEe
Q 001380 861 KKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQ------NGNLFIADTNNNIIRYLDLNKEEPELQTLE 931 (1089)
Q Consensus 861 ~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~------~G~lyVad~~n~~I~~~~~~~~~~~~~~l~ 931 (1089)
-+||+++..+.+++.. ..|+.|.||++.+ .|.|+|.+-++++|..||+... ..+-.|.
T Consensus 225 dvFd~~G~l~~r~as~------------g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG-~~~g~L~ 288 (336)
T TIGR03118 225 NVFTLNGQLLRRVASS------------GRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSG-AQLGQLL 288 (336)
T ss_pred EEEcCCCcEEEEeccC------------CcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCC-ceeeeec
Confidence 9999999999999743 2799999999965 4679999999999999999755 2444443
No 243
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=98.87 E-value=7.3e-09 Score=97.72 Aligned_cols=74 Identities=24% Similarity=0.344 Sum_probs=64.5
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
.+++|||+||++||++|+.+.|.|.++.++|++ +.++-|.. |....++++|
T Consensus 21 ~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~--i~f~~Vd~---------------------------~~~~~l~~~~ 71 (113)
T cd02989 21 SSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE--TKFIKVNA---------------------------EKAPFLVEKL 71 (113)
T ss_pred CCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC--CEEEEEEc---------------------------ccCHHHHHHC
Confidence 457899999999999999999999999999874 67777744 5567899999
Q ss_pred CCCceeEEEEECCCCcEEEEecCC
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGE 555 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~ 555 (1089)
+|..+|+++++ ++|+.+.++.|.
T Consensus 72 ~v~~vPt~l~f-k~G~~v~~~~g~ 94 (113)
T cd02989 72 NIKVLPTVILF-KNGKTVDRIVGF 94 (113)
T ss_pred CCccCCEEEEE-ECCEEEEEEECc
Confidence 99999999999 799999887764
No 244
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=98.84 E-value=9.3e-09 Score=95.72 Aligned_cols=86 Identities=20% Similarity=0.326 Sum_probs=67.6
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCC-CCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHH
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKD-MPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRE 530 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~-~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~ 530 (1089)
.+++++|+||++||++|+.+.|.+.++.+++++ ..+.+..|.+ +. .+++..
T Consensus 17 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~---------------------------~~-~~~~~~ 68 (104)
T cd02995 17 SDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDA---------------------------TA-NDVPSE 68 (104)
T ss_pred CCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeC---------------------------cc-hhhhhh
Confidence 358999999999999999999999999999986 4577777743 22 257778
Q ss_pred hCCCceeEEEEECCCC-cEEEEecCCCchhhHHHHH
Q 001380 531 LGVNSWPTFAVVGPNG-KLLAQLAGEGHRKDLDDLV 565 (1089)
Q Consensus 531 ~~v~~~Pt~~lid~~G-~i~~~~~G~~~~~~l~~~l 565 (1089)
+++.++|+++++.+++ .....+.|..+.+.+.++|
T Consensus 69 ~~~~~~Pt~~~~~~~~~~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 69 FVVDGFPTILFFPAGDKSNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred ccCCCCCEEEEEcCCCcCCceEccCCcCHHHHHhhC
Confidence 8999999999995544 2455688887777776553
No 245
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=98.83 E-value=4.7e-07 Score=100.07 Aligned_cols=218 Identities=18% Similarity=0.184 Sum_probs=134.6
Q ss_pred CcceeEEeeCCCEEEEEECCC------------CEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEec
Q 001380 658 RPQGLAYNAKKNLLYVADTEN------------HALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKP 725 (1089)
Q Consensus 658 ~P~gla~d~~g~~lyVaD~~n------------~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~ 725 (1089)
+.+++.+|+.|. |||.|++. -+|..||+.++.+.........- ...-+...+++++.
T Consensus 2 sV~~v~iD~~~r-LWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~----------~~~~s~lndl~VD~ 70 (287)
T PF03022_consen 2 SVQRVQIDECGR-LWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDI----------APPDSFLNDLVVDV 70 (287)
T ss_dssp -EEEEEE-TTSE-EEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCC----------S-TCGGEEEEEEEC
T ss_pred cccEEEEcCCCC-EEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHH----------cccccccceEEEEc
Confidence 457899998876 99999873 48999999987654333222110 11234678999997
Q ss_pred CC-----CEEEEEECCCcEEEEEECCCCeEEEEeCCCccccC-CCCCC-CCccccC---CceEEEcC---CCCEEEEEeC
Q 001380 726 IN-----EKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNL-NGSSS-LNTSFAQ---PSGISLSP---DFMEIYVADS 792 (1089)
Q Consensus 726 ~g-----~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~~~-~g~~~-~~~~~~~---P~glav~~---~g~~lyvad~ 792 (1089)
.. +.+||+|.+...|.+||..++...++...-..... .+... ....|.. ..|+++++ +|+.||+.-.
T Consensus 71 ~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~l 150 (287)
T PF03022_consen 71 RDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPL 150 (287)
T ss_dssp TTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEET
T ss_pred cCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeC
Confidence 43 49999999999999999999988777643111100 00000 0012222 45778866 7779999998
Q ss_pred CCCeEEEEEcCCCCeEEEecCCCCC----CCCccccCCCCCccccccccCceEEEEccCCcEEEEeCCCCEEEEEeCCC-
Q 001380 793 ESSSIRALNLKTGGSRLLAGGDPIF----PDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPAS- 867 (1089)
Q Consensus 793 ~~~~I~~~~~~~~~~~~~~g~~~~~----~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~lyVaD~~n~~I~~~d~~~- 867 (1089)
.+.+++++..+- +....... ....-..|.+ -....|+++|++|+||+++..++.|.+.++.+
T Consensus 151 ss~~ly~v~T~~-----L~~~~~~~~~~~~~~v~~lG~k--------~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~ 217 (287)
T PF03022_consen 151 SSRKLYRVPTSV-----LRDPSLSDAQALASQVQDLGDK--------GSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGP 217 (287)
T ss_dssp T-SEEEEEEHHH-----HCSTT--HHH-HHHT-EEEEE-----------SECEEEEETTTEEEEEECCCTEEEEEETTTS
T ss_pred CCCcEEEEEHHH-----hhCccccccccccccceecccc--------CCCCceEEECCCCcEEEecCCCCeEEEEeCCCC
Confidence 888899987541 10000000 0000011111 12457899999999999999999999999987
Q ss_pred ---CeEEEEeccCCCCCCCCcccccccCCCceEEEcc--CCcEEEEEC
Q 001380 868 ---NRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQ--NGNLFIADT 910 (1089)
Q Consensus 868 ---~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~--~G~lyVad~ 910 (1089)
..+.+++-.. ..+..|.++.++. +|.|||...
T Consensus 218 ~~~~~~~~l~~d~-----------~~l~~pd~~~i~~~~~g~L~v~sn 254 (287)
T PF03022_consen 218 YTPENFEILAQDP-----------RTLQWPDGLKIDPEGDGYLWVLSN 254 (287)
T ss_dssp B-GCCEEEEEE-C-----------C-GSSEEEEEE-T--TS-EEEEE-
T ss_pred cCccchheeEEcC-----------ceeeccceeeeccccCceEEEEEC
Confidence 4566666321 1489999999999 899999863
No 246
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=98.83 E-value=3.8e-08 Score=100.75 Aligned_cols=136 Identities=13% Similarity=0.171 Sum_probs=102.5
Q ss_pred CCccccCCCCCceeecccccCCCEEEEEEecCCCcc-hhhhhhhHHHHHHHcCCC-CE--EEEEEeCCCCCChhcHHHHH
Q 001380 432 EFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCIN-CMHVLPDLEFLEKKYKDM-PF--TVVGVHSAKFDNEKDLEAIR 507 (1089)
Q Consensus 432 ~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~-C~~~~p~l~~l~~~~~~~-~v--~vi~v~~~~~~~~~~~~~~~ 507 (1089)
.|+ |.+.+|+.++- .+++||++|++|-.+.||. |..|+..|.+..++..++ ++ +=|.|+++ +..|+++.++
T Consensus 121 pF~--L~d~~Gk~~te-~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvD--PeRD~~~~~~ 195 (280)
T KOG2792|consen 121 PFS--LVDHDGKRVTE-KDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVD--PERDSVEVVA 195 (280)
T ss_pred ceE--EEecCCCeecc-cccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeC--cccCCHHHHH
Confidence 355 55679999998 9999999999999999998 999999999998887653 33 23555553 4457889999
Q ss_pred HHHHHcCCccceeecC---ChhHHHHhCCCce--e-------------EEEEECCCCcEEEEecCCCchhhHHHHHHHHH
Q 001380 508 NAVLRYGISHPVVNDG---DMNLWRELGVNSW--P-------------TFAVVGPNGKLLAQLAGEGHRKDLDDLVEAAL 569 (1089)
Q Consensus 508 ~~~~~~~~~~~v~~d~---~~~l~~~~~v~~~--P-------------t~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l 569 (1089)
++++++.-...-+... -.++++.|.|+.- | ..|||||+|+++.-+--.-+.+++.+-|...+
T Consensus 196 eY~~eF~pkllGLTGT~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~~~~~~~I~~~v 275 (280)
T KOG2792|consen 196 EYVSEFHPKLLGLTGTTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNYDADELADSILKHV 275 (280)
T ss_pred HHHHhcChhhhcccCCHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccCCHHHHHHHHHHHH
Confidence 9999987665444433 4567888888532 2 47999999999876655667777777776655
Q ss_pred HHh
Q 001380 570 LFY 572 (1089)
Q Consensus 570 ~~~ 572 (1089)
+.+
T Consensus 276 ~~y 278 (280)
T KOG2792|consen 276 ASY 278 (280)
T ss_pred Hhc
Confidence 443
No 247
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=98.82 E-value=7.3e-09 Score=111.75 Aligned_cols=106 Identities=15% Similarity=0.171 Sum_probs=76.2
Q ss_pred EEEEcCCChHhHHHHHHHCCCCCCCccEEEE---cCCccCCCCCHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCC
Q 001380 184 VAVASSADRIKVDANLAAAGLPVSMFDAIVS---ADAFENLKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQM 260 (1089)
Q Consensus 184 vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~---~~~~~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~ 260 (1089)
+++.++...+.+...+++++.. +..+.+ -+-...+..|...++.+++++|++++++++|||+.||+.|++.+|+
T Consensus 118 ~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~ei~~~~~~Kg~al~~l~~~~~i~~~~~i~~GD~~NDi~m~~~ag~ 194 (230)
T PRK01158 118 VALRRTVPVEEVRELLEELGLD---LEIVDSGFAIHIKSPGVNKGTGLKKLAELMGIDPEEVAAIGDSENDLEMFEVAGF 194 (230)
T ss_pred eeecccccHHHHHHHHHHcCCc---EEEEecceEEEEeeCCCChHHHHHHHHHHhCCCHHHEEEECCchhhHHHHHhcCc
Confidence 4455555556677777776543 222222 2334456778999999999999999999999999999999999996
Q ss_pred eEEEEcCCCCHHHHhhcCCcEEecCcccCCHHHHHh
Q 001380 261 RCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDILT 296 (1089)
Q Consensus 261 ~~i~V~~g~~~~~l~~~~~d~vi~dl~el~i~~ll~ 296 (1089)
. |..+...+++++ .+++|..+-.+-.+...|.
T Consensus 195 ~---vam~Na~~~vk~-~a~~v~~~n~~~Gv~~~l~ 226 (230)
T PRK01158 195 G---VAVANADEELKE-AADYVTEKSYGEGVAEAIE 226 (230)
T ss_pred e---EEecCccHHHHH-hcceEecCCCcChHHHHHH
Confidence 4 334445566665 5889988877766666654
No 248
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=98.80 E-value=8e-07 Score=98.26 Aligned_cols=209 Identities=18% Similarity=0.270 Sum_probs=131.9
Q ss_pred CceEEEeecCCeEEEEeCCC------------CEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCC-
Q 001380 603 PGKLAIDILNNRLFISDSNH------------NRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKK- 668 (1089)
Q Consensus 603 P~~vavd~~~g~L~vsd~~~------------~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g- 668 (1089)
..++.+|. .|+|||.|+|. .+|+.+|+. +++++++.-+... .. .-...+.+++|...
T Consensus 3 V~~v~iD~-~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~-~~-------~~s~lndl~VD~~~~ 73 (287)
T PF03022_consen 3 VQRVQIDE-CGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDI-AP-------PDSFLNDLVVDVRDG 73 (287)
T ss_dssp EEEEEE-T-TSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCC-S--------TCGGEEEEEEECTTT
T ss_pred ccEEEEcC-CCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHH-cc-------cccccceEEEEccCC
Confidence 35788996 99999999874 489999997 6777776655221 10 11245788998632
Q ss_pred ----CEEEEEECCCCEEEEEECCCCeEEEEecCCCCCCCCCCCC--cc-cccccCCceeEEEec---CCCEEEEEECCCc
Q 001380 669 ----NLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGE--KG-TSQLLNSPWDVCYKP---INEKVYIAMAGQH 738 (1089)
Q Consensus 669 ----~~lyVaD~~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~--~~-~~~~l~~P~~la~~~---~g~~lyvad~~~~ 738 (1089)
.++|++|.....|.++|+.++...++-..-....+....- .+ .-+......|+++++ +++.||+.-..+.
T Consensus 74 ~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~ 153 (287)
T PF03022_consen 74 NCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSR 153 (287)
T ss_dssp TS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-S
T ss_pred CCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCC
Confidence 4799999999999999999999888865422211110000 00 011112356788876 6678999988888
Q ss_pred EEEEEECC---CC----------eEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCC-
Q 001380 739 QIWEHSTV---DG----------VTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKT- 804 (1089)
Q Consensus 739 ~I~~~~~~---~g----------~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~- 804 (1089)
.++++... +. .++.+. ....+..|+++|++| .||+++.+.++|.++++.+
T Consensus 154 ~ly~v~T~~L~~~~~~~~~~~~~~v~~lG---------------~k~~~s~g~~~D~~G-~ly~~~~~~~aI~~w~~~~~ 217 (287)
T PF03022_consen 154 KLYRVPTSVLRDPSLSDAQALASQVQDLG---------------DKGSQSDGMAIDPNG-NLYFTDVEQNAIGCWDPDGP 217 (287)
T ss_dssp EEEEEEHHHHCSTT--HHH-HHHT-EEEE---------------E---SECEEEEETTT-EEEEEECCCTEEEEEETTTS
T ss_pred cEEEEEHHHhhCccccccccccccceecc---------------ccCCCCceEEECCCC-cEEEecCCCCeEEEEeCCCC
Confidence 88887632 11 011111 001356799999988 9999999999999999885
Q ss_pred ---CCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEcc--CCcEEEEeC
Q 001380 805 ---GGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAK--NGQIYVADS 855 (1089)
Q Consensus 805 ---~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~--~G~lyVaD~ 855 (1089)
....+++.. ...|+.|.++.++. +|.|||...
T Consensus 218 ~~~~~~~~l~~d-------------------~~~l~~pd~~~i~~~~~g~L~v~sn 254 (287)
T PF03022_consen 218 YTPENFEILAQD-------------------PRTLQWPDGLKIDPEGDGYLWVLSN 254 (287)
T ss_dssp B-GCCEEEEEE--------------------CC-GSSEEEEEE-T--TS-EEEEE-
T ss_pred cCccchheeEEc-------------------CceeeccceeeeccccCceEEEEEC
Confidence 234444421 12389999999999 899999864
No 249
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.80 E-value=2e-08 Score=102.24 Aligned_cols=72 Identities=15% Similarity=0.294 Sum_probs=62.3
Q ss_pred CCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHhC
Q 001380 453 GKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRELG 532 (1089)
Q Consensus 453 gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~~ 532 (1089)
+++|||+||++||++|+.+.|.|.+|+++|. .+.++-|.+ +.. .++..|+
T Consensus 83 ~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~--~vkF~kVd~---------------------------d~~-~l~~~f~ 132 (175)
T cd02987 83 DTTVVVHIYEPGIPGCAALNSSLLCLAAEYP--AVKFCKIRA---------------------------SAT-GASDEFD 132 (175)
T ss_pred CcEEEEEEECCCCchHHHHHHHHHHHHHHCC--CeEEEEEec---------------------------cch-hhHHhCC
Confidence 4599999999999999999999999999996 478888853 222 6889999
Q ss_pred CCceeEEEEECCCCcEEEEecCC
Q 001380 533 VNSWPTFAVVGPNGKLLAQLAGE 555 (1089)
Q Consensus 533 v~~~Pt~~lid~~G~i~~~~~G~ 555 (1089)
|.++||++++ ++|+++.++.|.
T Consensus 133 v~~vPTllly-k~G~~v~~~vG~ 154 (175)
T cd02987 133 TDALPALLVY-KGGELIGNFVRV 154 (175)
T ss_pred CCCCCEEEEE-ECCEEEEEEech
Confidence 9999999999 899999887764
No 250
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.79 E-value=2.9e-08 Score=89.71 Aligned_cols=82 Identities=34% Similarity=0.571 Sum_probs=69.3
Q ss_pred CEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHhCC
Q 001380 454 KVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRELGV 533 (1089)
Q Consensus 454 k~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~~v 533 (1089)
++++|.||++||++|+...+.++++.++ ..++.++.++. +.+.++++.|++
T Consensus 11 ~~~ll~~~~~~C~~C~~~~~~~~~~~~~--~~~~~~~~i~~---------------------------~~~~~~~~~~~v 61 (93)
T cd02947 11 KPVVVDFWAPWCGPCKAIAPVLEELAEE--YPKVKFVKVDV---------------------------DENPELAEEYGV 61 (93)
T ss_pred CcEEEEEECCCChhHHHhhHHHHHHHHH--CCCceEEEEEC---------------------------CCChhHHHhcCc
Confidence 8899999999999999999999999988 34577888754 345678999999
Q ss_pred CceeEEEEECCCCcEEEEecCCCchhhHHHHH
Q 001380 534 NSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLV 565 (1089)
Q Consensus 534 ~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l 565 (1089)
.++|+++++ .+|+++..+.|....+.+..+|
T Consensus 62 ~~~P~~~~~-~~g~~~~~~~g~~~~~~l~~~i 92 (93)
T cd02947 62 RSIPTFLFF-KNGKEVDRVVGADPKEELEEFL 92 (93)
T ss_pred ccccEEEEE-ECCEEEEEEecCCCHHHHHHHh
Confidence 999999999 6788888888887777777665
No 251
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=98.76 E-value=3.8e-08 Score=87.25 Aligned_cols=80 Identities=18% Similarity=0.257 Sum_probs=63.6
Q ss_pred EEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHhCCCc
Q 001380 456 VVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRELGVNS 535 (1089)
Q Consensus 456 vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~~v~~ 535 (1089)
.|..||++||++|+...|.|+++.++++.. +.++-|.. +.+.+++++|++.+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~-~~~~~vd~---------------------------~~~~~~~~~~~v~~ 53 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDA-VEVEYINV---------------------------MENPQKAMEYGIMA 53 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCc-eEEEEEeC---------------------------ccCHHHHHHcCCcc
Confidence 467899999999999999999999998654 77777743 34557888999999
Q ss_pred eeEEEEECCCCcEEEEecCCCchhhHHHHHHHH
Q 001380 536 WPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAA 568 (1089)
Q Consensus 536 ~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~ 568 (1089)
+|++++ +|+. ++.|....+++.+.|+.+
T Consensus 54 vPt~~~---~g~~--~~~G~~~~~~l~~~l~~~ 81 (82)
T TIGR00411 54 VPAIVI---NGDV--EFIGAPTKEELVEAIKKR 81 (82)
T ss_pred CCEEEE---CCEE--EEecCCCHHHHHHHHHhh
Confidence 999876 5654 567877888888877654
No 252
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=98.76 E-value=2.2e-08 Score=94.14 Aligned_cols=78 Identities=15% Similarity=0.228 Sum_probs=61.4
Q ss_pred cCCCEEEEEEec-------CCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecC
Q 001380 451 LKGKVVVLDFWT-------YCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDG 523 (1089)
Q Consensus 451 ~~gk~vll~Fwa-------~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~ 523 (1089)
.+|++|+|+||| +||++|+.+.|.|+++.+++++ ++.++-|.+++. +...|.
T Consensus 19 ~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~-~v~fv~Vdvd~~--------------------~~w~d~ 77 (119)
T cd02952 19 HEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPE-DCVFIYCDVGDR--------------------PYWRDP 77 (119)
T ss_pred cCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCC-CCEEEEEEcCCc--------------------ccccCc
Confidence 368999999999 9999999999999999999984 377777754211 122356
Q ss_pred ChhHHHHhCCC-ceeEEEEECCCCcEE
Q 001380 524 DMNLWRELGVN-SWPTFAVVGPNGKLL 549 (1089)
Q Consensus 524 ~~~l~~~~~v~-~~Pt~~lid~~G~i~ 549 (1089)
+.++++.|+|. ++||++++...++++
T Consensus 78 ~~~~~~~~~I~~~iPT~~~~~~~~~l~ 104 (119)
T cd02952 78 NNPFRTDPKLTTGVPTLLRWKTPQRLV 104 (119)
T ss_pred chhhHhccCcccCCCEEEEEcCCceec
Confidence 67899999998 999999995544443
No 253
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.75 E-value=1.9e-08 Score=121.63 Aligned_cols=94 Identities=17% Similarity=0.275 Sum_probs=73.7
Q ss_pred ccCCCEEEEEEecCCCcchhhhhhhH---HHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChh
Q 001380 450 DLKGKVVVLDFWTYCCINCMHVLPDL---EFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMN 526 (1089)
Q Consensus 450 ~~~gk~vll~Fwa~wC~~C~~~~p~l---~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~ 526 (1089)
..+||+|+|+|||+||++|+.+.+.. .+++++++ ++.++.+.+++ +. +.+.+
T Consensus 471 ~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~--~~~~v~vDvt~-----~~------------------~~~~~ 525 (571)
T PRK00293 471 KGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA--DTVLLQADVTA-----NN------------------AEDVA 525 (571)
T ss_pred HhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc--CCEEEEEECCC-----CC------------------hhhHH
Confidence 34689999999999999999887764 56777765 47777775421 10 12357
Q ss_pred HHHHhCCCceeEEEEECCCCcEE--EEecCCCchhhHHHHHHHH
Q 001380 527 LWRELGVNSWPTFAVVGPNGKLL--AQLAGEGHRKDLDDLVEAA 568 (1089)
Q Consensus 527 l~~~~~v~~~Pt~~lid~~G~i~--~~~~G~~~~~~l~~~l~~~ 568 (1089)
++++|++.++|+++++|++|+++ .++.|..+.+++.+.++++
T Consensus 526 l~~~~~v~g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~ 569 (571)
T PRK00293 526 LLKHYNVLGLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQL 569 (571)
T ss_pred HHHHcCCCCCCEEEEECCCCCCcccccccCCCCHHHHHHHHHHh
Confidence 88999999999999999999984 6788999988888887764
No 254
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=2.2e-08 Score=101.64 Aligned_cols=91 Identities=29% Similarity=0.377 Sum_probs=75.3
Q ss_pred ccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHH
Q 001380 450 DLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWR 529 (1089)
Q Consensus 450 ~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~ 529 (1089)
.-.+|.|+|+|.|+||+||+...|.+..|..+|+ +.+++-|.+ |.-..++.
T Consensus 18 ~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp--~aVFlkVdV---------------------------d~c~~taa 68 (288)
T KOG0908|consen 18 AAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYP--GAVFLKVDV---------------------------DECRGTAA 68 (288)
T ss_pred ccCceEEEEEEEecccchHHhhhhHHHHhhhhCc--ccEEEEEeH---------------------------HHhhchhh
Confidence 3356999999999999999999999999999996 577777754 45567888
Q ss_pred HhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHHH
Q 001380 530 ELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALLF 571 (1089)
Q Consensus 530 ~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~~ 571 (1089)
.+||.++||++++ .+|+-+.++.|. +...|++.++..+..
T Consensus 69 ~~gV~amPTFiff-~ng~kid~~qGA-d~~gLe~kv~~~~st 108 (288)
T KOG0908|consen 69 TNGVNAMPTFIFF-RNGVKIDQIQGA-DASGLEEKVAKYAST 108 (288)
T ss_pred hcCcccCceEEEE-ecCeEeeeecCC-CHHHHHHHHHHHhcc
Confidence 9999999999999 899988888875 566677776665543
No 255
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=4e-05 Score=81.22 Aligned_cols=252 Identities=13% Similarity=0.180 Sum_probs=168.4
Q ss_pred CCCceEEEeecCCeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEee-CCCEEEEEECCC
Q 001380 601 KFPGKLAIDILNNRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNA-KKNLLYVADTEN 678 (1089)
Q Consensus 601 ~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~-~g~~lyVaD~~n 678 (1089)
..+..+.++. +|.+.++-+....|+.+|.. |+.+.++... ..| ++-+.+.. +...+|-+..++
T Consensus 15 ~~i~sl~fs~-~G~~litss~dDsl~LYd~~~g~~~~ti~sk-kyG-------------~~~~~Fth~~~~~i~sStk~d 79 (311)
T KOG1446|consen 15 GKINSLDFSD-DGLLLITSSEDDSLRLYDSLSGKQVKTINSK-KYG-------------VDLACFTHHSNTVIHSSTKED 79 (311)
T ss_pred CceeEEEecC-CCCEEEEecCCCeEEEEEcCCCceeeEeecc-ccc-------------ccEEEEecCCceEEEccCCCC
Confidence 3466788886 77777776667799999875 8888888776 322 23333332 233334444457
Q ss_pred CEEEEEECCC-CeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCC
Q 001380 679 HALREIDFVN-DTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDG 757 (1089)
Q Consensus 679 ~~I~~~d~~~-g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g 757 (1089)
..||-+++.+ ..++.+.|... .-..|.++|.+ ..|++.+...+|+-||.....++.+--
T Consensus 80 ~tIryLsl~dNkylRYF~GH~~-----------------~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~cqg~l~-- 139 (311)
T KOG1446|consen 80 DTIRYLSLHDNKYLRYFPGHKK-----------------RVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKCQGLLN-- 139 (311)
T ss_pred CceEEEEeecCceEEEcCCCCc-----------------eEEEEEecCCC-CeEEecccCCeEEeeEecCCCCceEEe--
Confidence 8899888865 66788876553 34678899987 888888888899999976554443321
Q ss_pred ccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCcc-ccCCCCCccccccc
Q 001380 758 YERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLF-KFGDRDGMGSEVLL 836 (1089)
Q Consensus 758 ~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~-~~g~~dg~~~~~~l 836 (1089)
...+.-.|+||+| .+|.+-.++..|..++...-. .+.| .|.-.++ ..
T Consensus 140 --------------~~~~pi~AfDp~G-LifA~~~~~~~IkLyD~Rs~d------------kgPF~tf~i~~~-----~~ 187 (311)
T KOG1446|consen 140 --------------LSGRPIAAFDPEG-LIFALANGSELIKLYDLRSFD------------KGPFTTFSITDN-----DE 187 (311)
T ss_pred --------------cCCCcceeECCCC-cEEEEecCCCeEEEEEecccC------------CCCceeEccCCC-----Cc
Confidence 1124457899998 888888888899999876210 1111 1111111 12
Q ss_pred cCceEEEEccCCcEEEEeCCCCEEEEEeCCCC-eEEEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEE
Q 001380 837 QHPLGVYCAKNGQIYVADSYNHKIKKLDPASN-RVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNII 915 (1089)
Q Consensus 837 ~~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~-~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I 915 (1089)
..-..|-+++||+..+--+.++.++.+|.=+| .+.++.+... ..+-|.+-++.|+|+-+++..++++|
T Consensus 188 ~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~-----------~~~~~~~a~ftPds~Fvl~gs~dg~i 256 (311)
T KOG1446|consen 188 AEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPN-----------AGNLPLSATFTPDSKFVLSGSDDGTI 256 (311)
T ss_pred cceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccC-----------CCCcceeEEECCCCcEEEEecCCCcE
Confidence 34567899999975555566778888886444 4566654322 23557778889999999999999999
Q ss_pred EEEeCCCCCceEEEEe
Q 001380 916 RYLDLNKEEPELQTLE 931 (1089)
Q Consensus 916 ~~~~~~~~~~~~~~l~ 931 (1089)
.++++++.. .+..+.
T Consensus 257 ~vw~~~tg~-~v~~~~ 271 (311)
T KOG1446|consen 257 HVWNLETGK-KVAVLR 271 (311)
T ss_pred EEEEcCCCc-EeeEec
Confidence 999998762 344444
No 256
>PTZ00102 disulphide isomerase; Provisional
Probab=98.74 E-value=3.2e-08 Score=119.14 Aligned_cols=104 Identities=18% Similarity=0.267 Sum_probs=81.5
Q ss_pred CCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCC-CEEEEEEeCCCCCChhcHHHHHHHHHHcCCccc
Q 001380 440 LNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDM-PFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHP 518 (1089)
Q Consensus 440 ~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~-~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (1089)
+.|..+...-.-.||.|||+|||+||++|+.+.|.++++++++++. .+.+..+.+
T Consensus 362 l~~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~------------------------ 417 (477)
T PTZ00102 362 VVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNG------------------------ 417 (477)
T ss_pred ecccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEEC------------------------
Confidence 4555544311236899999999999999999999999999998864 466666643
Q ss_pred eeecCChhHHHHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHH
Q 001380 519 VVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALL 570 (1089)
Q Consensus 519 v~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~ 570 (1089)
+.+...++.|+++++|+++++++++++..++.|..+.+.+.++|++...
T Consensus 418 ---~~~~~~~~~~~v~~~Pt~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~ 466 (477)
T PTZ00102 418 ---TANETPLEEFSWSAFPTILFVKAGERTPIPYEGERTVEGFKEFVNKHAT 466 (477)
T ss_pred ---CCCccchhcCCCcccCeEEEEECCCcceeEecCcCCHHHHHHHHHHcCC
Confidence 3344578899999999999998888876779999999988888877554
No 257
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.74 E-value=2.5e-05 Score=92.83 Aligned_cols=218 Identities=17% Similarity=0.207 Sum_probs=136.9
Q ss_pred CEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEE-EC-CCCEEEEEECCCCeEEEEecCCCC
Q 001380 623 NRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVA-DT-ENHALREIDFVNDTVRTLAGNGTK 700 (1089)
Q Consensus 623 ~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVa-D~-~n~~I~~~d~~~g~v~~~ag~g~~ 700 (1089)
.+|+++|.+|...+.+..... .-...+++|+|+.|+.+ +. ++..|+.+|+.+|..+.+....
T Consensus 182 ~~l~~~d~dg~~~~~lt~~~~--------------~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~-- 245 (435)
T PRK05137 182 KRLAIMDQDGANVRYLTDGSS--------------LVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFP-- 245 (435)
T ss_pred eEEEEECCCCCCcEEEecCCC--------------CeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCC--
Confidence 478888888776665543311 12567788999765554 32 3568999999988877765211
Q ss_pred CCCCCCCCcccccccCCceeEEEecCCCEEEEEEC--CCcEEEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCceE
Q 001380 701 GSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMA--GQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGI 778 (1089)
Q Consensus 701 ~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~--~~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~gl 778 (1089)
+ .-...+|+|+|+.|+++.. ++.+||.+|..++.++.+.... ......
T Consensus 246 g---------------~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~---------------~~~~~~ 295 (435)
T PRK05137 246 G---------------MTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSP---------------AIDTSP 295 (435)
T ss_pred C---------------cccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEEccCCC---------------CccCce
Confidence 0 1235679999988876643 3567999999988877664211 012346
Q ss_pred EEcCCCCEEEEEeC--CCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccCCc-EEEEeC
Q 001380 779 SLSPDFMEIYVADS--ESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQ-IYVADS 855 (1089)
Q Consensus 779 av~~~g~~lyvad~--~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~-lyVaD~ 855 (1089)
+++|||+.|+++.. +...|++++.+++..+.+..+. + .-....++++|+ |+++..
T Consensus 296 ~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~--------------~--------~~~~~~~SpdG~~ia~~~~ 353 (435)
T PRK05137 296 SYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGG--------------G--------RYSTPVWSPRGDLIAFTKQ 353 (435)
T ss_pred eEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCC--------------C--------cccCeEECCCCCEEEEEEc
Confidence 88999987766543 2357999998877666553210 0 011246788885 555432
Q ss_pred --CCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCc-EEE-EECCC----CEEEEEeCCCC
Q 001380 856 --YNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGN-LFI-ADTNN----NIIRYLDLNKE 923 (1089)
Q Consensus 856 --~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~-lyV-ad~~n----~~I~~~~~~~~ 923 (1089)
...+|..+|++++....+... .....+.+.++|+ |++ ++... ..|..+++++.
T Consensus 354 ~~~~~~i~~~d~~~~~~~~lt~~---------------~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 354 GGGQFSIGVMKPDGSGERILTSG---------------FLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred CCCceEEEEEECCCCceEeccCC---------------CCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence 235788999877766555321 0134567788886 444 43322 47999999886
No 258
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=98.73 E-value=1.8e-08 Score=101.00 Aligned_cols=93 Identities=20% Similarity=0.288 Sum_probs=71.2
Q ss_pred CccHHHHHHHHHhCCCeEEEEcCC----C----------hHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHH
Q 001380 167 FPGALELINQCKSKGLKVAVASSA----D----------RIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSAS 232 (1089)
Q Consensus 167 ~pG~~~lL~~Lk~~Gi~vaIvSn~----~----------~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l 232 (1089)
.|++.+.|++|.+.|+.++|+||- . ...++.+++.++++ +...++.......||.+.|+..++
T Consensus 31 ~~~v~~~L~~l~~~Gy~IvIvTNQ~gi~~~~~~~~~~~~~~ki~~il~~l~ip---~~~~~a~~~d~~RKP~~GM~~~~~ 107 (159)
T PF08645_consen 31 PPGVPEALRELHKKGYKIVIVTNQSGIGRGMGEKDLENFHEKIENILKELGIP---IQVYAAPHKDPCRKPNPGMWEFAL 107 (159)
T ss_dssp -TTHHHHHHHHHHTTEEEEEEEE-CCCCCTBTCCHHHHHHHHHHHHHHHCTS----EEEEECGCSSTTSTTSSHHHHHHC
T ss_pred chhHHHHHHHHHhcCCeEEEEeCccccccccccchHHHHHHHHHHHHHHcCCc---eEEEecCCCCCCCCCchhHHHHHH
Confidence 458999999999999999999992 1 24567778888886 444444444578999999999999
Q ss_pred HHcCC----CCCcEEEEcCC-----------hhhHHHHHHcCCeE
Q 001380 233 KILNV----PTSECIVIEDA-----------LAGVQAAKAAQMRC 262 (1089)
Q Consensus 233 ~~lgv----~p~~~v~VGD~-----------~~Di~aA~~aG~~~ 262 (1089)
++++. +.++++||||. -+|..-|.++|+++
T Consensus 108 ~~~~~~~~id~~~Sf~VGDaagr~~~~~d~s~~D~~fA~N~gi~f 152 (159)
T PF08645_consen 108 KDYNDGVEIDLANSFYVGDAAGRSKKKKDFSDSDRKFALNCGIKF 152 (159)
T ss_dssp CCTSTT--S-CCC-EEEESSCHCTB-S--S--HHHHHHHHHT--E
T ss_pred HhccccccccccceEEEeccCCCCCcccccChhHHHHHHHcCCcc
Confidence 99874 88999999996 58999999999874
No 259
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.71 E-value=1e-07 Score=90.71 Aligned_cols=102 Identities=15% Similarity=0.097 Sum_probs=64.8
Q ss_pred cccCCCEEEEEEecCCCcchhhhhhhH---HHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCCh
Q 001380 449 RDLKGKVVVLDFWTYCCINCMHVLPDL---EFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDM 525 (1089)
Q Consensus 449 ~~~~gk~vll~Fwa~wC~~C~~~~p~l---~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~ 525 (1089)
..-.+|+|||+|++.||++|+.+.+.. .++.+.+. +++++|-|.. ++.++..+.+.+
T Consensus 11 Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~-~~fv~VkvD~-----~~~~~~~~~~~~-------------- 70 (124)
T cd02955 11 ARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILN-ENFVPIKVDR-----EERPDVDKIYMN-------------- 70 (124)
T ss_pred HHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHh-CCEEEEEEeC-----CcCcHHHHHHHH--------------
Confidence 344689999999999999999886522 23444433 2577777743 222222222211
Q ss_pred hHHHHhCCCceeEEEEECCCCcEEEEecCC-----CchhhHHHHHHHHHH
Q 001380 526 NLWRELGVNSWPTFAVVGPNGKLLAQLAGE-----GHRKDLDDLVEAALL 570 (1089)
Q Consensus 526 ~l~~~~~v~~~Pt~~lid~~G~i~~~~~G~-----~~~~~l~~~l~~~l~ 570 (1089)
.....|++.++|+++++|++|++++...+- .....+..+++.+.+
T Consensus 71 ~~~~~~~~~G~Pt~vfl~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (124)
T cd02955 71 AAQAMTGQGGWPLNVFLTPDLKPFFGGTYFPPEDRYGRPGFKTVLEKIRE 120 (124)
T ss_pred HHHHhcCCCCCCEEEEECCCCCEEeeeeecCCCCcCCCcCHHHHHHHHHH
Confidence 122357999999999999999999875432 233455566555543
No 260
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=98.71 E-value=3.8e-07 Score=100.00 Aligned_cols=148 Identities=18% Similarity=0.307 Sum_probs=112.2
Q ss_pred cCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCC-
Q 001380 715 LNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSE- 793 (1089)
Q Consensus 715 l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~- 793 (1089)
-..|-||+++..|+.|||||+.- .+++++++++..+...... + ...+...+++.++++| .+|++|+.
T Consensus 114 CGRPLGl~f~~~ggdL~VaDAYl-GL~~V~p~g~~a~~l~~~~-----~-----G~~~kf~N~ldI~~~g-~vyFTDSSs 181 (376)
T KOG1520|consen 114 CGRPLGIRFDKKGGDLYVADAYL-GLLKVGPEGGLAELLADEA-----E-----GKPFKFLNDLDIDPEG-VVYFTDSSS 181 (376)
T ss_pred cCCcceEEeccCCCeEEEEecce-eeEEECCCCCcceeccccc-----c-----CeeeeecCceeEcCCC-eEEEecccc
Confidence 34899999999999999999864 5889999998866655322 1 1345567899999976 99999975
Q ss_pred ----------------CCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccCC-cEEEEeCC
Q 001380 794 ----------------SSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNG-QIYVADSY 856 (1089)
Q Consensus 794 ----------------~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G-~lyVaD~~ 856 (1089)
++|+.++|+.+..++++.. .|..|.|++.++|+ .+.++++.
T Consensus 182 k~~~rd~~~a~l~g~~~GRl~~YD~~tK~~~VLld----------------------~L~F~NGlaLS~d~sfvl~~Et~ 239 (376)
T KOG1520|consen 182 KYDRRDFVFAALEGDPTGRLFRYDPSTKVTKVLLD----------------------GLYFPNGLALSPDGSFVLVAETT 239 (376)
T ss_pred ccchhheEEeeecCCCccceEEecCcccchhhhhh----------------------cccccccccCCCCCCEEEEEeec
Confidence 3577788877666655533 27789999999998 58899999
Q ss_pred CCEEEEEeCCCCeE---EEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEE
Q 001380 857 NHKIKKLDPASNRV---STLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIAD 909 (1089)
Q Consensus 857 n~~I~~~d~~~~~v---~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad 909 (1089)
..+|+++=.++..+ ..++. +-+ ..|.-|..+++|+.||+=
T Consensus 240 ~~ri~rywi~g~k~gt~EvFa~-~LP------------G~PDNIR~~~~G~fWVal 282 (376)
T KOG1520|consen 240 TARIKRYWIKGPKAGTSEVFAE-GLP------------GYPDNIRRDSTGHFWVAL 282 (376)
T ss_pred cceeeeeEecCCccCchhhHhh-cCC------------CCCcceeECCCCCEEEEE
Confidence 99999986655544 33331 222 348899999999999985
No 261
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=98.70 E-value=4.6e-08 Score=92.51 Aligned_cols=69 Identities=22% Similarity=0.477 Sum_probs=54.9
Q ss_pred CCEEEEEEecCCCcchhhhhhhHHHHHHHcCCC--CEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHH
Q 001380 453 GKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDM--PFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRE 530 (1089)
Q Consensus 453 gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~--~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~ 530 (1089)
+|++||+||++||++|+.+.|.++++++++++. .+.+..|.+. .+....+++.
T Consensus 19 ~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~-------------------------~~~~~~~~~~ 73 (114)
T cd02992 19 PSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCA-------------------------DEENVALCRD 73 (114)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEecc-------------------------chhhHHHHHh
Confidence 479999999999999999999999999988642 3666666321 0234578999
Q ss_pred hCCCceeEEEEECCCC
Q 001380 531 LGVNSWPTFAVVGPNG 546 (1089)
Q Consensus 531 ~~v~~~Pt~~lid~~G 546 (1089)
|+|.++|+++++.++.
T Consensus 74 ~~i~~~Pt~~lf~~~~ 89 (114)
T cd02992 74 FGVTGYPTLRYFPPFS 89 (114)
T ss_pred CCCCCCCEEEEECCCC
Confidence 9999999999995444
No 262
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=98.69 E-value=5.4e-08 Score=112.44 Aligned_cols=90 Identities=17% Similarity=0.225 Sum_probs=70.3
Q ss_pred cCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCC-hhHH-
Q 001380 451 LKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGD-MNLW- 528 (1089)
Q Consensus 451 ~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~-~~l~- 528 (1089)
.++++|||+|||+||++|+.+.|.+.+++++|++.++.++.|.+ |.+ ..++
T Consensus 369 ~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdv---------------------------D~~~~~~~~ 421 (463)
T TIGR00424 369 ERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRA---------------------------DGDQKEFAK 421 (463)
T ss_pred cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEEC---------------------------CCCccHHHH
Confidence 36899999999999999999999999999999877788888854 222 2344
Q ss_pred HHhCCCceeEEEEECCCCcEEEEec-CCCchhhHHHHHHH
Q 001380 529 RELGVNSWPTFAVVGPNGKLLAQLA-GEGHRKDLDDLVEA 567 (1089)
Q Consensus 529 ~~~~v~~~Pt~~lid~~G~i~~~~~-G~~~~~~l~~~l~~ 567 (1089)
+.|+|.++||++++.++..-...|. |..+.+.|..+|+.
T Consensus 422 ~~~~I~~~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~ 461 (463)
T TIGR00424 422 QELQLGSFPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNL 461 (463)
T ss_pred HHcCCCccceEEEEECCCCCceeCCCCCCCHHHHHHHHHh
Confidence 6899999999999954433333465 46788888887765
No 263
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=98.69 E-value=2.6e-07 Score=99.77 Aligned_cols=86 Identities=19% Similarity=0.214 Sum_probs=70.2
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCC---hHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCc
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSAD---RIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSE 241 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~---~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~ 241 (1089)
.++||+.++|+.|+++|++++++||+. ++.+...++++|++...++.++..++ .++++..+..+.+.+++
T Consensus 118 ~~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T~~~Lkk~Gi~~~~~d~lllr~~---~~~K~~rr~~I~~~y~I---- 190 (266)
T TIGR01533 118 KPVAGALDFLNYANSKGVKIFYVSNRSEKEKAATLKNLKRFGFPQADEEHLLLKKD---KSSKESRRQKVQKDYEI---- 190 (266)
T ss_pred CcCccHHHHHHHHHHCCCeEEEEeCCCcchHHHHHHHHHHcCcCCCCcceEEeCCC---CCCcHHHHHHHHhcCCE----
Confidence 689999999999999999999999976 44566888999997334577777753 35677888888888887
Q ss_pred EEEEcCChhhHHHHHH
Q 001380 242 CIVIEDALAGVQAAKA 257 (1089)
Q Consensus 242 ~v~VGD~~~Di~aA~~ 257 (1089)
+++|||...|+.....
T Consensus 191 vl~vGD~~~Df~~~~~ 206 (266)
T TIGR01533 191 VLLFGDNLLDFDDFFY 206 (266)
T ss_pred EEEECCCHHHhhhhhc
Confidence 8999999999965443
No 264
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=98.69 E-value=1.8e-07 Score=99.73 Aligned_cols=101 Identities=12% Similarity=0.122 Sum_probs=69.0
Q ss_pred EEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEE
Q 001380 185 AVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIA 264 (1089)
Q Consensus 185 aIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~ 264 (1089)
++++....+.+...++..++. .+... ..-+-...+..|...++.+++++|++++++++|||+.||+.|++.+|+.
T Consensus 111 ~~~~~~~~~~~~~~l~~~~~~-~~~~~-~~~ei~~~~~~K~~~i~~l~~~~~i~~~~~i~iGDs~ND~~ml~~ag~~--- 185 (215)
T TIGR01487 111 IMREGKDVDEVREIIKERGLN-LVDSG-FAIHIMKKGVDKGVGVEKLKELLGIKPEEVAAIGDSENDIDLFRVVGFK--- 185 (215)
T ss_pred EecCCccHHHHHHHHHhCCeE-EEecC-ceEEEecCCCChHHHHHHHHHHhCCCHHHEEEECCCHHHHHHHHhCCCe---
Confidence 344555556667777776653 21110 1112223456777899999999999999999999999999999999954
Q ss_pred EcCCCCHHHHhhcCCcEEecCcccCCH
Q 001380 265 VTTTLSEERLKEASPSLIRKEIGSVSL 291 (1089)
Q Consensus 265 V~~g~~~~~l~~~~~d~vi~dl~el~i 291 (1089)
|..+...+++++ .++++..+-.+-.+
T Consensus 186 vam~na~~~~k~-~A~~v~~~~~~~Gv 211 (215)
T TIGR01487 186 VAVANADDQLKE-IADYVTSNPYGEGV 211 (215)
T ss_pred EEcCCccHHHHH-hCCEEcCCCCCchh
Confidence 444445666666 47888876555433
No 265
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.68 E-value=2e-06 Score=101.05 Aligned_cols=260 Identities=14% Similarity=0.145 Sum_probs=143.6
Q ss_pred CCeEEEEeCCCCEEEEEeCCCCEEE-EEecCCCCCCCCCC----------CCccccCCcceeEEeeCCCEEEEEECCCCE
Q 001380 612 NNRLFISDSNHNRIVVTDLDGNFIV-QIGSSGEEGLRDGS----------FDDATFNRPQGLAYNAKKNLLYVADTENHA 680 (1089)
Q Consensus 612 ~g~L~vsd~~~~~I~~~~~~g~~~~-~i~~~g~~g~~dG~----------~~~~~f~~P~gla~d~~g~~lyVaD~~n~~ 680 (1089)
+..|||-|-.|.||.+++.+--... .+..+...+.-.+. +..++|. +-++++|+.+++++...+.
T Consensus 141 Gr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~----~PlpnDGk~l~~~~ey~~~ 216 (635)
T PRK02888 141 GRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFR----IPLPNDGKDLDDPKKYRSL 216 (635)
T ss_pred eeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccc----cccCCCCCEeecccceeEE
Confidence 6789999999999999998732211 22222122111111 1122232 3356688878888777788
Q ss_pred EEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCC---cE-----------EEEEECC
Q 001380 681 LREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQ---HQ-----------IWEHSTV 746 (1089)
Q Consensus 681 I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~---~~-----------I~~~~~~ 746 (1089)
+..||.++..+..-.-.+ .+|..++++++|+++|++...+ +. +..|+..
T Consensus 217 vSvID~etmeV~~qV~Vd-----------------gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~ 279 (635)
T PRK02888 217 FTAVDAETMEVAWQVMVD-----------------GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA 279 (635)
T ss_pred EEEEECccceEEEEEEeC-----------------CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH
Confidence 999998875443222111 1678888999998999885221 22 2233322
Q ss_pred C---------------CeEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEe
Q 001380 747 D---------------GVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLA 811 (1089)
Q Consensus 747 ~---------------g~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~ 811 (1089)
. +.+..+.+.............-.--..|+|++++|||+++|++...++.|.+++...... .+.
T Consensus 280 ~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~-~~~ 358 (635)
T PRK02888 280 RIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDD-LFD 358 (635)
T ss_pred HHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhh-hhh
Confidence 1 122222221100000000000011247999999999999999999999999999874321 111
Q ss_pred cCCCCCCCCccccCCCCCc-cccccccCceEEEEccCCcEEEEeCCCCEEEEEeCCC-------CeEEEEeccCCCCCCC
Q 001380 812 GGDPIFPDNLFKFGDRDGM-GSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPAS-------NRVSTLAGIGKAGFKD 883 (1089)
Q Consensus 812 g~~~~~~~~l~~~g~~dg~-~~~~~l~~P~gva~~~~G~lyVaD~~n~~I~~~d~~~-------~~v~t~~g~g~~g~~~ 883 (1089)
+. + . .++-. +.-..-..|+..++|++|+.|++=.-...|.++|.+. ..+..+...-.-.|..
T Consensus 359 ~~-------~-~--~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~p 428 (635)
T PRK02888 359 GK-------I-K--PRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQP 428 (635)
T ss_pred cc-------C-C--ccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCcc
Confidence 00 0 0 00000 0001123699999999999999988888999998653 1111111111112223
Q ss_pred CcccccccCCCceEEEccCCcEEEE
Q 001380 884 GAALAAQLSEPAGIIEAQNGNLFIA 908 (1089)
Q Consensus 884 g~~~~~~l~~P~gi~vd~~G~lyVa 908 (1089)
| .+..+.|=..+++|+-+|+
T Consensus 429 g-----h~~~~~g~t~~~dgk~l~~ 448 (635)
T PRK02888 429 G-----HNHASMGETKEADGKWLVS 448 (635)
T ss_pred c-----eeeecCCCcCCCCCCEEEE
Confidence 3 4555566666778874444
No 266
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=98.68 E-value=4.4e-08 Score=105.29 Aligned_cols=110 Identities=15% Similarity=0.124 Sum_probs=77.0
Q ss_pred eEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeE
Q 001380 183 KVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRC 262 (1089)
Q Consensus 183 ~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~ 262 (1089)
...+.+....+.+...++.++.....+......+-...+..|...+..+++++|++++++++|||+.||+.|++.+|+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~K~~~i~~l~~~~~i~~~~~i~~GD~~NDi~m~~~ag~-- 186 (225)
T TIGR01482 109 LVKMRYGIDVDTVREIIKELGLNLVAVDSGFDIHILPQGVNKGVAVKKLKEKLGIKPGETLVCGDSENDIDLFEVPGF-- 186 (225)
T ss_pred eEEEeecCCHHHHHHHHHhcCceEEEecCCcEEEEeeCCCCHHHHHHHHHHHhCCCHHHEEEECCCHhhHHHHHhcCc--
Confidence 344555556677777888877631100001122334456788899999999999999999999999999999999995
Q ss_pred EEEcCCCCHHHHhhcCCcEEecCcccCC----HHHHHh
Q 001380 263 IAVTTTLSEERLKEASPSLIRKEIGSVS----LNDILT 296 (1089)
Q Consensus 263 i~V~~g~~~~~l~~~~~d~vi~dl~el~----i~~ll~ 296 (1089)
.|..+...+++++ .+++|..+-.+-. +..+|+
T Consensus 187 -~vam~Na~~~~k~-~A~~vt~~~~~~G~~~~v~~~l~ 222 (225)
T TIGR01482 187 -GVAVANAQPELKE-WADYVTESPYGEGGAEAIGEILQ 222 (225)
T ss_pred -eEEcCChhHHHHH-hcCeecCCCCCCcHHHHHHHHHH
Confidence 3545555566655 5899988777765 555554
No 267
>PLN02309 5'-adenylylsulfate reductase
Probab=98.66 E-value=8.9e-08 Score=110.72 Aligned_cols=90 Identities=17% Similarity=0.239 Sum_probs=72.3
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeec-CChhHHH-
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVND-GDMNLWR- 529 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d-~~~~l~~- 529 (1089)
++|++||+||++||++|+++.|.+.+++++|+..++.++.|.+ | .+..+++
T Consensus 364 ~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~---------------------------d~~~~~la~~ 416 (457)
T PLN02309 364 RKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRA---------------------------DGDQKEFAKQ 416 (457)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEEC---------------------------CCcchHHHHh
Confidence 6899999999999999999999999999999877899988854 3 3456775
Q ss_pred HhCCCceeEEEEECCCCcEEEEecC-CCchhhHHHHHHHH
Q 001380 530 ELGVNSWPTFAVVGPNGKLLAQLAG-EGHRKDLDDLVEAA 568 (1089)
Q Consensus 530 ~~~v~~~Pt~~lid~~G~i~~~~~G-~~~~~~l~~~l~~~ 568 (1089)
.|+|.++||++++.+...-...|.| ..+.+.|..+|+.+
T Consensus 417 ~~~I~~~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 417 ELQLGSFPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred hCCCceeeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 5999999999999544433344654 56788888887753
No 268
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=98.65 E-value=1.1e-07 Score=99.31 Aligned_cols=85 Identities=20% Similarity=0.398 Sum_probs=64.7
Q ss_pred ccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccC---------CC----CCHHHHHHH---
Q 001380 168 PGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFEN---------LK----PAPDIFLSA--- 231 (1089)
Q Consensus 168 pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~---------~K----P~~~~~~~~--- 231 (1089)
|++.++|+.++++|++++|+|++....++.+++.+|++ . +.+++.+.... .. -|...++.+
T Consensus 92 ~~~~e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~~i~-~--~~v~~~~~~~~~~~~~~~~~~~~~~~~K~~~l~~~~~~ 168 (192)
T PF12710_consen 92 PDAMELIRELKDNGIKVVIVSGSPDEIIEPIAERLGID-D--DNVIGNELFDNGGGIFTGRITGSNCGGKAEALKELYIR 168 (192)
T ss_dssp TTHHHHHHHHHHTTSEEEEEEEEEHHHHHHHHHHTTSS-E--GGEEEEEEECTTCCEEEEEEEEEEESHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCC-c--eEEEEEeeeecccceeeeeECCCCCCcHHHHHHHHHHH
Confidence 66669999999999999999999999999999999997 2 12333221000 00 256667666
Q ss_pred HHHcCCCCCcEEEEcCChhhHHHHH
Q 001380 232 SKILNVPTSECIVIEDALAGVQAAK 256 (1089)
Q Consensus 232 l~~lgv~p~~~v~VGD~~~Di~aA~ 256 (1089)
..+ +....++++|||+.+|+.+++
T Consensus 169 ~~~-~~~~~~~~~iGDs~~D~~~lr 192 (192)
T PF12710_consen 169 DEE-DIDPDRVIAIGDSINDLPMLR 192 (192)
T ss_dssp HHH-THTCCEEEEEESSGGGHHHHH
T ss_pred hhc-CCCCCeEEEEECCHHHHHHhC
Confidence 444 788899999999999999875
No 269
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.64 E-value=4.9e-05 Score=90.15 Aligned_cols=218 Identities=16% Similarity=0.166 Sum_probs=134.9
Q ss_pred CEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEEC--CCCEEEEEECCCCeEEEEecCCCC
Q 001380 623 NRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADT--ENHALREIDFVNDTVRTLAGNGTK 700 (1089)
Q Consensus 623 ~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~--~n~~I~~~d~~~g~v~~~ag~g~~ 700 (1089)
.+|.++|.+|.....+-..+. .-...+++|+|+.|+.+.. +.+.|+++++.++..+.+....
T Consensus 184 ~~l~i~D~~g~~~~~lt~~~~--------------~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~-- 247 (433)
T PRK04922 184 YALQVADSDGYNPQTILRSAE--------------PILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFR-- 247 (433)
T ss_pred EEEEEECCCCCCceEeecCCC--------------ccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCC--
Confidence 357777777665544433211 1246678889986666543 3468999999888877765311
Q ss_pred CCCCCCCCcccccccCCceeEEEecCCCEEEEEE--CCCcEEEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCceE
Q 001380 701 GSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAM--AGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGI 778 (1089)
Q Consensus 701 ~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad--~~~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~gl 778 (1089)
+ .....+|+|+|+.|+++. .++.+|+.+|..++.++.+.... ......
T Consensus 248 g---------------~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~---------------~~~~~~ 297 (433)
T PRK04922 248 G---------------INGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHF---------------GIDTEP 297 (433)
T ss_pred C---------------CccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECccCC---------------CCccce
Confidence 1 113568999998887654 34568999999988876654211 112346
Q ss_pred EEcCCCCEEEEEeCC--CCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccCCc-EEEEeC
Q 001380 779 SLSPDFMEIYVADSE--SSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQ-IYVADS 855 (1089)
Q Consensus 779 av~~~g~~lyvad~~--~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~-lyVaD~ 855 (1089)
++++||+.|+++... ...|+.++..++..+.+... | .....++++++|+ |+++..
T Consensus 298 ~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~-----------g-----------~~~~~~~~SpDG~~Ia~~~~ 355 (433)
T PRK04922 298 TWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQ-----------G-----------NYNARASVSPDGKKIAMVHG 355 (433)
T ss_pred EECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecC-----------C-----------CCccCEEECCCCCEEEEEEC
Confidence 889999877665432 34688888877666544211 0 0122467889985 655543
Q ss_pred C--CCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCc-EEE-EEC-CCCEEEEEeCCCC
Q 001380 856 Y--NHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGN-LFI-ADT-NNNIIRYLDLNKE 923 (1089)
Q Consensus 856 ~--n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~-lyV-ad~-~n~~I~~~~~~~~ 923 (1089)
. ...|..+|..++....+... . . -...++.++|+ |++ ++. +...|..+++++.
T Consensus 356 ~~~~~~I~v~d~~~g~~~~Lt~~-~------------~--~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~ 413 (433)
T PRK04922 356 SGGQYRIAVMDLSTGSVRTLTPG-S------------L--DESPSFAPNGSMVLYATREGGRGVLAAVSTDGR 413 (433)
T ss_pred CCCceeEEEEECCCCCeEECCCC-C------------C--CCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 2 34799999988877655321 0 0 12346778886 444 433 3457888888775
No 270
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.61 E-value=1.1e-05 Score=85.22 Aligned_cols=221 Identities=18% Similarity=0.269 Sum_probs=143.3
Q ss_pred CCCCCCceEEEeecCCeEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECC
Q 001380 598 SPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTE 677 (1089)
Q Consensus 598 ~~l~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~ 677 (1089)
+-...-.+++++|..+.||..-...-.|++++..|+++++|...+ |..|.+|.+..+|. ..++|..
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g-------------~~DpE~Ieyig~n~-fvi~dER 148 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTG-------------FSDPETIEYIGGNQ-FVIVDER 148 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccc-------------cCChhHeEEecCCE-EEEEehh
Confidence 334456789999988888877666678999999999999998763 67899999986555 7778888
Q ss_pred CCEEEEEECCCC-eEEEEec----CCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECC-CcEEEEEECCCCeEE
Q 001380 678 NHALREIDFVND-TVRTLAG----NGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAG-QHQIWEHSTVDGVTR 751 (1089)
Q Consensus 678 n~~I~~~d~~~g-~v~~~ag----~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~-~~~I~~~~~~~g~~~ 751 (1089)
..++.++..+.+ .+..... .|..... + ..=-|+|+++.+..+|++-.. .-.|+.++.......
T Consensus 149 ~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~-N----------~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~ 217 (316)
T COG3204 149 DRALYLFTVDADTTVISAKVQKIPLGTTNKK-N----------KGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLS 217 (316)
T ss_pred cceEEEEEEcCCccEEeccceEEeccccCCC-C----------cCceeeecCCCCceEEEEEccCCcEEEEEecCCcccc
Confidence 888887766543 2222111 1111100 0 123589999999999999654 345666652211111
Q ss_pred EEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEE--ecCCCCCCCCccccCCCCC
Q 001380 752 AFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLL--AGGDPIFPDNLFKFGDRDG 829 (1089)
Q Consensus 752 ~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~--~g~~~~~~~~l~~~g~~dg 829 (1089)
.-..... .....-.+..-+|+.+++..+.|+|-.-++..+..++.++..+..+ .+|. .|
T Consensus 218 ~~~~~~~------~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~-------------~g 278 (316)
T COG3204 218 VHASLDP------TADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGN-------------HG 278 (316)
T ss_pred cccccCc------ccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCC-------------CC
Confidence 1110000 0001122456789999988789999999999999999986644333 2221 11
Q ss_pred ccccccccCceEEEEccCCcEEEEeCCCCEEEEEeC
Q 001380 830 MGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDP 865 (1089)
Q Consensus 830 ~~~~~~l~~P~gva~~~~G~lyVaD~~n~~I~~~d~ 865 (1089)
-...+..|.|||+|.+|+|||+..-| --++|.+
T Consensus 279 --L~~dipqaEGiamDd~g~lYIvSEPn-lfy~F~~ 311 (316)
T COG3204 279 --LSSDIPQAEGIAMDDDGNLYIVSEPN-LFYRFTP 311 (316)
T ss_pred --CcccCCCcceeEECCCCCEEEEecCC-cceeccc
Confidence 12236789999999999999886543 4455544
No 271
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.61 E-value=1.4e-07 Score=97.30 Aligned_cols=71 Identities=24% Similarity=0.294 Sum_probs=60.3
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
++++|||+||++||++|+.+.|.|.+|+++|.. +.++-|.+ + .....|
T Consensus 101 ~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~--vkFvkI~a-----------------------------d-~~~~~~ 148 (192)
T cd02988 101 KDTWVVVHLYKDGIPLCRLLNQHLSELARKFPD--TKFVKIIS-----------------------------T-QCIPNY 148 (192)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHCCC--CEEEEEEh-----------------------------H-HhHhhC
Confidence 356999999999999999999999999999974 67777732 1 124789
Q ss_pred CCCceeEEEEECCCCcEEEEecCC
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGE 555 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~ 555 (1089)
++..+||++++ ++|+++.++.|.
T Consensus 149 ~i~~lPTlliy-k~G~~v~~ivG~ 171 (192)
T cd02988 149 PDKNLPTILVY-RNGDIVKQFIGL 171 (192)
T ss_pred CCCCCCEEEEE-ECCEEEEEEeCc
Confidence 99999999999 999999998874
No 272
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=98.61 E-value=4.3e-07 Score=91.03 Aligned_cols=194 Identities=15% Similarity=0.130 Sum_probs=120.7
Q ss_pred ceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhhcCCC-HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHH
Q 001380 79 VSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTG-EANFLGGVASVKGVKGFDSEAAKKRFFEIYLDK 157 (1089)
Q Consensus 79 ~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (1089)
.-+++||+|-||+|.... ..+...++......++...+..+ .-++...+.++.+-......+..+.+..
T Consensus 13 ril~~FDFD~TIid~dSD-----~wVv~~lp~~~l~~qL~~t~p~~~Wne~M~rv~k~Lheqgv~~~~ik~~~r~----- 82 (256)
T KOG3120|consen 13 RILLVFDFDRTIIDQDSD-----NWVVDELPTTDLFNQLRDTYPKGFWNELMDRVFKELHEQGVRIAEIKQVLRS----- 82 (256)
T ss_pred cEEEEEecCceeecCCcc-----hHHHHhcccchhHHHHHHhcccchHHHHHHHHHHHHHHcCCCHHHHHHHHhc-----
Confidence 468999999999986632 22333344443333433333221 2223333333333223233333322221
Q ss_pred hcCCCCCCCCccHHHHHHHHHhCCC-eEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcC----CccC------------
Q 001380 158 YAKPNSGIGFPGALELINQCKSKGL-KVAVASSADRIKVDANLAAAGLPVSMFDAIVSAD----AFEN------------ 220 (1089)
Q Consensus 158 ~~~~~~~~~~pG~~~lL~~Lk~~Gi-~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~----~~~~------------ 220 (1089)
.+..||+.++++.+++.|. .+.|+|..+.-.++.+|+.+++. ++|..|++.- +-+.
T Consensus 83 ------iP~~Pgmv~lik~~ak~g~~eliIVSDaNsfFIe~~Lea~~~~-d~F~~IfTNPa~~da~G~L~v~pyH~~hsC 155 (256)
T KOG3120|consen 83 ------IPIVPGMVRLIKSAAKLGCFELIIVSDANSFFIEEILEAAGIH-DLFSEIFTNPACVDASGRLLVRPYHTQHSC 155 (256)
T ss_pred ------CCCCccHHHHHHHHHhCCCceEEEEecCchhHHHHHHHHccHH-HHHHHHhcCCcccCCCCcEEeecCCCCCcc
Confidence 2789999999999999985 99999999999999999999997 9998887652 1110
Q ss_pred -----CCCCHHHHHHHH---HHcCCCCCcEEEEcCChhhHHHHHHc-CCeEEEEcCCCCHHHHhhcCCcEEecCcccC
Q 001380 221 -----LKPAPDIFLSAS---KILNVPTSECIVIEDALAGVQAAKAA-QMRCIAVTTTLSEERLKEASPSLIRKEIGSV 289 (1089)
Q Consensus 221 -----~KP~~~~~~~~l---~~lgv~p~~~v~VGD~~~Di~aA~~a-G~~~i~V~~g~~~~~l~~~~~d~vi~dl~el 289 (1089)
.--|..++.+.. .+-|+..++.+||||+.+|+-.-... +.+.+.-..|.....+....|-.+..++-++
T Consensus 156 ~~CPsNmCKg~Vl~~~~~s~~~~gv~yer~iYvGDG~nD~CP~l~Lr~~D~ampRkgfpl~k~~~~~p~~~kasV~~W 233 (256)
T KOG3120|consen 156 NLCPSNMCKGLVLDELVASQLKDGVRYERLIYVGDGANDFCPVLRLRACDVAMPRKGFPLWKLISANPMLLKASVLEW 233 (256)
T ss_pred CcCchhhhhhHHHHHHHHHHhhcCCceeeEEEEcCCCCCcCcchhcccCceecccCCCchHhhhhcCcceeeeeEEec
Confidence 011223333332 23377888999999999998776554 4466666667766666666665554444444
No 273
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=98.61 E-value=5.8e-06 Score=93.90 Aligned_cols=231 Identities=21% Similarity=0.384 Sum_probs=128.6
Q ss_pred cCCcceeEEeeCCCEEEEEECCCCEEEEEECCCCeE-EEEecCCCCCCCCCCCCcccccccCCceeEEEecC---CCEEE
Q 001380 656 FNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTV-RTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPI---NEKVY 731 (1089)
Q Consensus 656 f~~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~v-~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~---g~~ly 731 (1089)
++.|.+|++.|+|. +||++. .++|++++. ++.. ..+.....- . ........|++++|+ ++.||
T Consensus 1 L~~P~~~a~~pdG~-l~v~e~-~G~i~~~~~-~g~~~~~v~~~~~v-~---------~~~~~gllgia~~p~f~~n~~lY 67 (331)
T PF07995_consen 1 LNNPRSMAFLPDGR-LLVAER-SGRIWVVDK-DGSLKTPVADLPEV-F---------ADGERGLLGIAFHPDFASNGYLY 67 (331)
T ss_dssp ESSEEEEEEETTSC-EEEEET-TTEEEEEET-TTEECEEEEE-TTT-B---------TSTTBSEEEEEE-TTCCCC-EEE
T ss_pred CCCceEEEEeCCCc-EEEEeC-CceEEEEeC-CCcCcceecccccc-c---------ccccCCcccceeccccCCCCEEE
Confidence 46899999999987 999998 899999994 4444 444322110 0 011236789999994 45999
Q ss_pred EEECCC--------cEEEEEECCCC--eE----EEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCC----
Q 001380 732 IAMAGQ--------HQIWEHSTVDG--VT----RAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSE---- 793 (1089)
Q Consensus 732 vad~~~--------~~I~~~~~~~g--~~----~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~---- 793 (1089)
++-... .+|.++....+ .+ ..+.+.. ........-.+|+++||| .|||+-..
T Consensus 68 v~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p---------~~~~~~H~g~~l~fgpDG-~LYvs~G~~~~~ 137 (331)
T PF07995_consen 68 VYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLP---------DTSSGNHNGGGLAFGPDG-KLYVSVGDGGND 137 (331)
T ss_dssp EEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEE---------S-CSSSS-EEEEEE-TTS-EEEEEEB-TTTG
T ss_pred EEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeC---------CCCCCCCCCccccCCCCC-cEEEEeCCCCCc
Confidence 987632 46777766544 11 1121110 001223445689999999 99997532
Q ss_pred ---------CCeEEEEEcCCCCeEEEecCCCCC-----CCCccccCCCCCccccccccCceEEEEccC-CcEEEEeCCCC
Q 001380 794 ---------SSSIRALNLKTGGSRLLAGGDPIF-----PDNLFKFGDRDGMGSEVLLQHPLGVYCAKN-GQIYVADSYNH 858 (1089)
Q Consensus 794 ---------~~~I~~~~~~~~~~~~~~g~~~~~-----~~~l~~~g~~dg~~~~~~l~~P~gva~~~~-G~lyVaD~~n~ 858 (1089)
.++|.++++++. +....|.. ...+|+.| |.+|.++++++. |+||++|.+..
T Consensus 138 ~~~~~~~~~~G~ilri~~dG~----~p~dnP~~~~~~~~~~i~A~G----------lRN~~~~~~d~~tg~l~~~d~G~~ 203 (331)
T PF07995_consen 138 DNAQDPNSLRGKILRIDPDGS----IPADNPFVGDDGADSEIYAYG----------LRNPFGLAFDPNTGRLWAADNGPD 203 (331)
T ss_dssp GGGCSTTSSTTEEEEEETTSS----B-TTSTTTTSTTSTTTEEEE------------SEEEEEEEETTTTEEEEEEE-SS
T ss_pred ccccccccccceEEEecccCc----CCCCCccccCCCceEEEEEeC----------CCccccEEEECCCCcEEEEccCCC
Confidence 357888887642 11222221 11223333 668999999998 99999997653
Q ss_pred ---EEEEEeCCCCeE--EEEeccCCCCC-------CCC---c-ccccccCCCceEEEcc-------CCcEEEEECCCCEE
Q 001380 859 ---KIKKLDPASNRV--STLAGIGKAGF-------KDG---A-ALAAQLSEPAGIIEAQ-------NGNLFIADTNNNII 915 (1089)
Q Consensus 859 ---~I~~~d~~~~~v--~t~~g~g~~g~-------~~g---~-~~~~~l~~P~gi~vd~-------~G~lyVad~~n~~I 915 (1089)
.|.++.+..+.= ....+....+. ..+ + ..-..-..|.|+.+-. .|.++|++...++|
T Consensus 204 ~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i 283 (331)
T PF07995_consen 204 GWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSCPGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRI 283 (331)
T ss_dssp SSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-TTS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEE
T ss_pred CCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCCCCcCccceeecCccccCceEEECCccCccccCcEEEecCCCCEE
Confidence 455554311100 00000000000 000 0 0011125688888752 46799999999999
Q ss_pred EEEeCCCC
Q 001380 916 RYLDLNKE 923 (1089)
Q Consensus 916 ~~~~~~~~ 923 (1089)
.++.++..
T Consensus 284 ~~~~~~~~ 291 (331)
T PF07995_consen 284 WRLDLDED 291 (331)
T ss_dssp EEEEEETT
T ss_pred EEEeeecC
Confidence 99999755
No 274
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.60 E-value=1.6e-07 Score=81.70 Aligned_cols=73 Identities=22% Similarity=0.384 Sum_probs=54.7
Q ss_pred EEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHhCCCce
Q 001380 457 VLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRELGVNSW 536 (1089)
Q Consensus 457 ll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~~v~~~ 536 (1089)
.|+||++||++|....|.++++.+++... +.++-| | +...+..|++.++
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~-~~~~~v-----------------------------~-~~~~a~~~~v~~v 50 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGID-AEFEKV-----------------------------T-DMNEILEAGVTAT 50 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCC-eEEEEe-----------------------------C-CHHHHHHcCCCcC
Confidence 37899999999999999999999998754 777766 1 1223677999999
Q ss_pred eEEEEECCCCcEEEEecCC-CchhhHHHHH
Q 001380 537 PTFAVVGPNGKLLAQLAGE-GHRKDLDDLV 565 (1089)
Q Consensus 537 Pt~~lid~~G~i~~~~~G~-~~~~~l~~~l 565 (1089)
|++++ +|+++ +.|. ...+++.+++
T Consensus 51 Pti~i---~G~~~--~~G~~~~~~~l~~~l 75 (76)
T TIGR00412 51 PGVAV---DGELV--IMGKIPSKEEIKEIL 75 (76)
T ss_pred CEEEE---CCEEE--EEeccCCHHHHHHHh
Confidence 99888 88877 4453 2335555443
No 275
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=98.60 E-value=1.2e-05 Score=90.71 Aligned_cols=294 Identities=16% Similarity=0.206 Sum_probs=158.8
Q ss_pred CCCCCCCCCceEEEeecCCeEEEEeCCCCEEEEEeCCCCEEE------EEecCCCCCCCCCCCC---ccccCCcceeEEe
Q 001380 595 LFTSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIV------QIGSSGEEGLRDGSFD---DATFNRPQGLAYN 665 (1089)
Q Consensus 595 ~~~~~l~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~g~~~~------~i~~~g~~g~~dG~~~---~~~f~~P~gla~d 665 (1089)
.+++.|.+|++++..| +|.+.|+....+++.++...+.... .+-..+..|..|.... ...+..|.+++..
T Consensus 61 ~~a~gLe~p~~~~~lP-~G~~~v~er~~G~l~~i~~g~~~~~~~~~~~~~~~~~~~Gll~~al~~~fa~~~~~~~~~a~~ 139 (399)
T COG2133 61 VVAQGLEHPWGLARLP-DGVLLVTERPTGRLRLISDGGSASPPVSTVPIVLLRGQGGLLDIALSPDFAQGRLVYFGISEP 139 (399)
T ss_pred cccccccCchhheecC-CceEEEEccCCccEEEecCCCcccccccccceEEeccCCCccceEecccccccceeeeEEEee
Confidence 5567899999999998 5688888877687777653322111 1111112222221111 1225678888886
Q ss_pred eCCCEEEEEECCCCEEEEEECCCCeEEE---EecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcE---
Q 001380 666 AKKNLLYVADTENHALREIDFVNDTVRT---LAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQ--- 739 (1089)
Q Consensus 666 ~~g~~lyVaD~~n~~I~~~d~~~g~v~~---~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~--- 739 (1089)
. ++ +|++. ...+.+++....+++. +...- +... ..+-..|+++|+| +|||+-..+..
T Consensus 140 ~-~~-~~~~n--~~~~~~~~~g~~~l~~~~~i~~~l----------P~~~--~H~g~~l~f~pDG-~Lyvs~G~~~~~~~ 202 (399)
T COG2133 140 G-GG-LYVAN--RVAIGRLPGGDTKLSEPKVIFRGI----------PKGG--HHFGGRLVFGPDG-KLYVTTGSNGDPAL 202 (399)
T ss_pred c-CC-ceEEE--EEEEEEcCCCccccccccEEeecC----------CCCC--CcCcccEEECCCC-cEEEEeCCCCCccc
Confidence 3 33 67776 2344455511112221 11000 0000 2355679999999 99998765511
Q ss_pred EEEEECCCCeEEEEeCCCcccc-CCC--CCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeE-EEecCCC
Q 001380 740 IWEHSTVDGVTRAFSGDGYERN-LNG--SSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSR-LLAGGDP 815 (1089)
Q Consensus 740 I~~~~~~~g~~~~~~g~g~~~~-~~g--~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~-~~~g~~~ 815 (1089)
.+.-....|++..+...+.... ..+ ..-...+..+|.|++++|..+.||+++.+...++ .. .++. .-.|...
T Consensus 203 aq~~~~~~Gk~~r~~~a~~~~~d~p~~~~~i~s~G~RN~qGl~w~P~tg~Lw~~e~g~d~~~---~~-Deln~i~~G~nY 278 (399)
T COG2133 203 AQDNVSLAGKVLRIDRAGIIPADNPFPNSEIWSYGHRNPQGLAWHPVTGALWTTEHGPDALR---GP-DELNSIRPGKNY 278 (399)
T ss_pred ccCccccccceeeeccCcccccCCCCCCcceEEeccCCccceeecCCCCcEEEEecCCCccc---Cc-ccccccccCCcc
Confidence 1111111222222221111100 000 1112356789999999999669999998876661 11 1221 2223333
Q ss_pred CCCCCccccCC-------CCCccccccc----------cCceEEEEcc-C------CcEEEEeCCCCEEEEEeCCCCeEE
Q 001380 816 IFPDNLFKFGD-------RDGMGSEVLL----------QHPLGVYCAK-N------GQIYVADSYNHKIKKLDPASNRVS 871 (1089)
Q Consensus 816 ~~~~~l~~~g~-------~dg~~~~~~l----------~~P~gva~~~-~------G~lyVaD~~n~~I~~~d~~~~~v~ 871 (1089)
.+|.- .||. .++. ..+.+ ..|.|+++-. + |.++|+....-.+.+.+++++...
T Consensus 279 GWP~~--~~G~~~~g~~~~~~~-~~~~~~~p~~~~~~h~ApsGmaFy~G~~fP~~r~~lfV~~hgsw~~~~~~~~g~~~~ 355 (399)
T COG2133 279 GWPYA--YFGQNYDGRAIPDGT-VVAGAIQPVYTWAPHIAPSGMAFYTGDLFPAYRGDLFVGAHGSWPVLRLRPDGNYKV 355 (399)
T ss_pred CCcee--ccCcccCccccCCCc-ccccccCCceeeccccccceeEEecCCcCccccCcEEEEeecceeEEEeccCCCcce
Confidence 33221 2221 0110 00111 2358998863 2 689999988888888999888333
Q ss_pred EEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECC-CCEEEEEeCCC
Q 001380 872 TLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTN-NNIIRYLDLNK 922 (1089)
Q Consensus 872 t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~-n~~I~~~~~~~ 922 (1089)
+..++-.. + .-.+|.+|++.+||-|||+|-. +++|.++...+
T Consensus 356 ~~~~fl~~---d------~~gR~~dV~v~~DGallv~~D~~~g~i~Rv~~~~ 398 (399)
T COG2133 356 VLTGFLSG---D------LGGRPRDVAVAPDGALLVLTDQGDGRILRVSYAG 398 (399)
T ss_pred EEEEEEec---C------CCCcccceEECCCCeEEEeecCCCCeEEEecCCC
Confidence 33332110 0 1157999999999999999877 67999987654
No 276
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=98.58 E-value=4.5e-08 Score=92.93 Aligned_cols=82 Identities=18% Similarity=0.231 Sum_probs=69.5
Q ss_pred HHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCcEEEEcCChhhH
Q 001380 173 LINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDALAGV 252 (1089)
Q Consensus 173 lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di 252 (1089)
-|+.|.+.|+++||+|+.....++.-.+.+|+. . ++-+ .+-+-..|..+++++++.+++|.+|||..+|+
T Consensus 43 Gik~l~~~Gi~vAIITGr~s~ive~Ra~~LGI~-~----~~qG-----~~dK~~a~~~L~~~~~l~~e~~ayiGDD~~Dl 112 (170)
T COG1778 43 GIKLLLKSGIKVAIITGRDSPIVEKRAKDLGIK-H----LYQG-----ISDKLAAFEELLKKLNLDPEEVAYVGDDLVDL 112 (170)
T ss_pred HHHHHHHcCCeEEEEeCCCCHHHHHHHHHcCCc-e----eeec-----hHhHHHHHHHHHHHhCCCHHHhhhhcCccccH
Confidence 356688899999999999999999999999996 3 3322 13345889999999999999999999999999
Q ss_pred HHHHHcCCeEEE
Q 001380 253 QAAKAAQMRCIA 264 (1089)
Q Consensus 253 ~aA~~aG~~~i~ 264 (1089)
....+.|+.++.
T Consensus 113 pvm~~vGls~a~ 124 (170)
T COG1778 113 PVMEKVGLSVAV 124 (170)
T ss_pred HHHHHcCCcccc
Confidence 999999976544
No 277
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.58 E-value=3.9e-05 Score=91.16 Aligned_cols=217 Identities=16% Similarity=0.198 Sum_probs=131.8
Q ss_pred EEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEEC--CCCEEEEEECCCCeEEEEecCCCCC
Q 001380 624 RIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADT--ENHALREIDFVNDTVRTLAGNGTKG 701 (1089)
Q Consensus 624 ~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~--~n~~I~~~d~~~g~v~~~ag~g~~~ 701 (1089)
+|...|.+|...+.+-.... .-....++|+|+.|+++.. +...|+.+|+.++..+.+.... +
T Consensus 199 ~l~i~d~dG~~~~~l~~~~~--------------~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~--g 262 (448)
T PRK04792 199 QLMIADYDGYNEQMLLRSPE--------------PLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFP--G 262 (448)
T ss_pred EEEEEeCCCCCceEeecCCC--------------cccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCC--C
Confidence 56666777664444332211 1245678899987665532 3458999999888776664211 0
Q ss_pred CCCCCCCcccccccCCceeEEEecCCCEEEEEEC--CCcEEEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCceEE
Q 001380 702 SDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMA--GQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGIS 779 (1089)
Q Consensus 702 ~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~--~~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~gla 779 (1089)
.-...+|+|+|+.|+++.. ++.+|+.+|..++..+.+.... ......+
T Consensus 263 ---------------~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~---------------~~~~~p~ 312 (448)
T PRK04792 263 ---------------INGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHR---------------AIDTEPS 312 (448)
T ss_pred ---------------CcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCC---------------CCccceE
Confidence 1124689999998877543 3457999999888776654211 1234567
Q ss_pred EcCCCCEEEEEeC--CCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccCCc-EEEEeCC
Q 001380 780 LSPDFMEIYVADS--ESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQ-IYVADSY 856 (1089)
Q Consensus 780 v~~~g~~lyvad~--~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~-lyVaD~~ 856 (1089)
+++||+.|+++.. +...|+.++.+++..+.+.... ....+.++++||+ +|++...
T Consensus 313 wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g----------------------~~~~~~~~SpDG~~l~~~~~~ 370 (448)
T PRK04792 313 WHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEG----------------------EQNLGGSITPDGRSMIMVNRT 370 (448)
T ss_pred ECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCC----------------------CCCcCeeECCCCCEEEEEEec
Confidence 8999988876543 3457888898877765542110 0112347788884 6555433
Q ss_pred --CCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCc-EEEEECCC--CEEEEEeCCCC
Q 001380 857 --NHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGN-LFIADTNN--NIIRYLDLNKE 923 (1089)
Q Consensus 857 --n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~-lyVad~~n--~~I~~~~~~~~ 923 (1089)
...|.++|.+++.+..+.... . -..| .+.++|+ |+++.... ..|..++.++.
T Consensus 371 ~g~~~I~~~dl~~g~~~~lt~~~-~-----------d~~p---s~spdG~~I~~~~~~~g~~~l~~~~~~G~ 427 (448)
T PRK04792 371 NGKFNIARQDLETGAMQVLTSTR-L-----------DESP---SVAPNGTMVIYSTTYQGKQVLAAVSIDGR 427 (448)
T ss_pred CCceEEEEEECCCCCeEEccCCC-C-----------CCCc---eECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 347888999888876664210 0 0123 5677775 54443322 35788888776
No 278
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.57 E-value=0.00016 Score=85.65 Aligned_cols=226 Identities=16% Similarity=0.200 Sum_probs=135.4
Q ss_pred EEEEeC-CCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEEC--CCCEEEEEECCCCeE
Q 001380 615 LFISDS-NHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADT--ENHALREIDFVNDTV 691 (1089)
Q Consensus 615 L~vsd~-~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~--~n~~I~~~d~~~g~v 691 (1089)
.|+++. +..+|..+|.+|.....+..... .-...+++|+|+.|+++.. ++..|+.+|+.+|..
T Consensus 167 ayv~~~~~~~~L~~~D~dG~~~~~l~~~~~--------------~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~ 232 (427)
T PRK02889 167 AYVIKTGNRYQLQISDADGQNAQSALSSPE--------------PIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR 232 (427)
T ss_pred EEEEccCCccEEEEECCCCCCceEeccCCC--------------CcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE
Confidence 445533 23568888888776554432211 1135688999987766543 346799999998887
Q ss_pred EEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEE--CCCcEEEEEECCCCeEEEEeCCCccccCCCCCCCC
Q 001380 692 RTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAM--AGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLN 769 (1089)
Q Consensus 692 ~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad--~~~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~ 769 (1089)
..+.... + .....+|+|+|+.|+++. .++.+||.+|..++..+.+....
T Consensus 233 ~~l~~~~--g---------------~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~------------ 283 (427)
T PRK02889 233 RVVANFK--G---------------SNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQSS------------ 283 (427)
T ss_pred EEeecCC--C---------------CccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCCCC------------
Confidence 7765211 1 123578999998887754 34567999998877665553211
Q ss_pred ccccCCceEEEcCCCCEEEEEeC--CCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccC
Q 001380 770 TSFAQPSGISLSPDFMEIYVADS--ESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKN 847 (1089)
Q Consensus 770 ~~~~~P~glav~~~g~~lyvad~--~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~ 847 (1089)
......++++||+.|+++.. +...|+.++..++..+.+... +. .....++++|
T Consensus 284 ---~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~-----------g~-----------~~~~~~~SpD 338 (427)
T PRK02889 284 ---GIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFT-----------GS-----------YNTSPRISPD 338 (427)
T ss_pred ---CCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecC-----------CC-----------CcCceEECCC
Confidence 01234578999987765532 345788888776655444211 00 0113468888
Q ss_pred Cc-EEEEeCC--CCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCc-E-EEEECCC-CEEEEEeCC
Q 001380 848 GQ-IYVADSY--NHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGN-L-FIADTNN-NIIRYLDLN 921 (1089)
Q Consensus 848 G~-lyVaD~~--n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~-l-yVad~~n-~~I~~~~~~ 921 (1089)
|+ |+.+... ...|.++|..++....+.... . -...++.++|+ | |.++... ..+..++++
T Consensus 339 G~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~-------------~--~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~ 403 (427)
T PRK02889 339 GKLLAYISRVGGAFKLYVQDLATGQVTALTDTT-------------R--DESPSFAPNGRYILYATQQGGRSVLAAVSSD 403 (427)
T ss_pred CCEEEEEEccCCcEEEEEEECCCCCeEEccCCC-------------C--ccCceECCCCCEEEEEEecCCCEEEEEEECC
Confidence 85 4443322 347999998888777664210 0 12447778886 4 4443333 357777887
Q ss_pred CC
Q 001380 922 KE 923 (1089)
Q Consensus 922 ~~ 923 (1089)
+.
T Consensus 404 g~ 405 (427)
T PRK02889 404 GR 405 (427)
T ss_pred CC
Confidence 65
No 279
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.57 E-value=5.4e-05 Score=82.72 Aligned_cols=231 Identities=16% Similarity=0.222 Sum_probs=148.7
Q ss_pred eEEEeecCCeEEEEeCCCCEEEEEeCCC-CEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEEE
Q 001380 605 KLAIDILNNRLFISDSNHNRIVVTDLDG-NFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALRE 683 (1089)
Q Consensus 605 ~vavd~~~g~L~vsd~~~~~I~~~~~~g-~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~ 683 (1089)
.+.+.+ +++.+++-..++.|.+++... +.+..+... -.....+.++++++ ++++...++.|+.
T Consensus 56 ~~~~~~-~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~--------------~~~i~~~~~~~~~~-~~~~~~~~~~i~~ 119 (289)
T cd00200 56 DVAASA-DGTYLASGSSDKTIRLWDLETGECVRTLTGH--------------TSYVSSVAFSPDGR-ILSSSSRDKTIKV 119 (289)
T ss_pred EEEECC-CCCEEEEEcCCCeEEEEEcCcccceEEEecc--------------CCcEEEEEEcCCCC-EEEEecCCCeEEE
Confidence 567776 444444444578899998874 444444322 12467888988877 6666666889999
Q ss_pred EECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeE-EEEeCCCccccC
Q 001380 684 IDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVT-RAFSGDGYERNL 762 (1089)
Q Consensus 684 ~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~-~~~~g~g~~~~~ 762 (1089)
++..++....... +. -.....+++++++ .++++....+.|..||...+.. ..+...
T Consensus 120 ~~~~~~~~~~~~~-~~---------------~~~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~~~~~~~~~~~------ 176 (289)
T cd00200 120 WDVETGKCLTTLR-GH---------------TDWVNSVAFSPDG-TFVASSSQDGTIKLWDLRTGKCVATLTGH------ 176 (289)
T ss_pred EECCCcEEEEEec-cC---------------CCcEEEEEEcCcC-CEEEEEcCCCcEEEEEccccccceeEecC------
Confidence 9988554333321 00 1256789999986 4444444567888888875443 333211
Q ss_pred CCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEE
Q 001380 763 NGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGV 842 (1089)
Q Consensus 763 ~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gv 842 (1089)
-.....++++++++.++++.. .+.|+.++...+....... +. -....++
T Consensus 177 ---------~~~i~~~~~~~~~~~l~~~~~-~~~i~i~d~~~~~~~~~~~------------~~---------~~~i~~~ 225 (289)
T cd00200 177 ---------TGEVNSVAFSPDGEKLLSSSS-DGTIKLWDLSTGKCLGTLR------------GH---------ENGVNSV 225 (289)
T ss_pred ---------ccccceEEECCCcCEEEEecC-CCcEEEEECCCCceecchh------------hc---------CCceEEE
Confidence 124568999999867777665 7889999987543321110 00 1146778
Q ss_pred EEccCCcEEEEeCCCCEEEEEeCCCCeE-EEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEEEEe
Q 001380 843 YCAKNGQIYVADSYNHKIKKLDPASNRV-STLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLD 919 (1089)
Q Consensus 843 a~~~~G~lyVaD~~n~~I~~~d~~~~~v-~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~~ 919 (1089)
++++++.++++...++.|+.+|..++.. ..+.+ .-....+++++++|+.+++-..++.|..++
T Consensus 226 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~--------------~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 226 AFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSG--------------HTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccc--------------cCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 8998888888887789999999875443 33321 113467889998888777777788887653
No 280
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=98.57 E-value=0.0001 Score=76.75 Aligned_cols=245 Identities=18% Similarity=0.225 Sum_probs=172.2
Q ss_pred eEEEeecCCeEEEEeCCCCEEEEEeCC------CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCC
Q 001380 605 KLAIDILNNRLFISDSNHNRIVVTDLD------GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTEN 678 (1089)
Q Consensus 605 ~vavd~~~g~L~vsd~~~~~I~~~~~~------g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n 678 (1089)
.+++.+.+-.++++-+....|++++.+ |..++.+.+. -..-.++++.++|+ ..++-...
T Consensus 20 ~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GH--------------sH~v~dv~~s~dg~-~alS~swD 84 (315)
T KOG0279|consen 20 ALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGH--------------SHFVSDVVLSSDGN-FALSASWD 84 (315)
T ss_pred EEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeecc--------------ceEecceEEccCCc-eEEecccc
Confidence 345555556788887777788888654 3344444332 12458999999999 67777788
Q ss_pred CEEEEEECCCCe-EEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCC
Q 001380 679 HALREIDFVNDT-VRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDG 757 (1089)
Q Consensus 679 ~~I~~~d~~~g~-v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g 757 (1089)
..+|.+|+.+|+ ...+.|.+. .-.++++++++ .-.|+......|..||..++...++...+
T Consensus 85 ~~lrlWDl~~g~~t~~f~GH~~-----------------dVlsva~s~dn-~qivSGSrDkTiklwnt~g~ck~t~~~~~ 146 (315)
T KOG0279|consen 85 GTLRLWDLATGESTRRFVGHTK-----------------DVLSVAFSTDN-RQIVSGSRDKTIKLWNTLGVCKYTIHEDS 146 (315)
T ss_pred ceEEEEEecCCcEEEEEEecCC-----------------ceEEEEecCCC-ceeecCCCcceeeeeeecccEEEEEecCC
Confidence 999999999865 344554442 45789999987 77788888889999998877776666432
Q ss_pred ccccCCCCCCCCccccCCceEEEcCCC-CEEEEEeCCCCeEEEEEcCCCCeE-EEecCCCCCCCCccccCCCCCcccccc
Q 001380 758 YERNLNGSSSLNTSFAQPSGISLSPDF-MEIYVADSESSSIRALNLKTGGSR-LLAGGDPIFPDNLFKFGDRDGMGSEVL 835 (1089)
Q Consensus 758 ~~~~~~g~~~~~~~~~~P~glav~~~g-~~lyvad~~~~~I~~~~~~~~~~~-~~~g~~~~~~~~l~~~g~~dg~~~~~~ 835 (1089)
. -.+-+.+.++|.. +-+++.-+....|+.+++.+-.++ .+.|.
T Consensus 147 ~-------------~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh---------------------- 191 (315)
T KOG0279|consen 147 H-------------REWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGH---------------------- 191 (315)
T ss_pred C-------------cCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccc----------------------
Confidence 1 2467789999975 466677778889999998865443 22221
Q ss_pred ccCceEEEEccCCcEEEEeCCCCEEEEEeCCC-CeEEEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCE
Q 001380 836 LQHPLGVYCAKNGQIYVADSYNHKIKKLDPAS-NRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNI 914 (1089)
Q Consensus 836 l~~P~gva~~~~G~lyVaD~~n~~I~~~d~~~-~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~ 914 (1089)
-..-..++++|||.+..+.-..+++.-.|.+. +.+.++. .+..-..+|+.|+ +.+++-.-...
T Consensus 192 ~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~---------------a~~~v~sl~fspn-rywL~~at~~s 255 (315)
T KOG0279|consen 192 SGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE---------------AFDIVNSLCFSPN-RYWLCAATATS 255 (315)
T ss_pred cccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc---------------CCCeEeeEEecCC-ceeEeeccCCc
Confidence 11346789999999999988888998888754 3445543 2345678899885 57777666777
Q ss_pred EEEEeCCCCCceEEEEeecc
Q 001380 915 IRYLDLNKEEPELQTLELKG 934 (1089)
Q Consensus 915 I~~~~~~~~~~~~~~l~~~~ 934 (1089)
|+++++..+ ..+..+...+
T Consensus 256 IkIwdl~~~-~~v~~l~~d~ 274 (315)
T KOG0279|consen 256 IKIWDLESK-AVVEELKLDG 274 (315)
T ss_pred eEEEeccch-hhhhhccccc
Confidence 999999987 3455555443
No 281
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.56 E-value=0.00016 Score=85.86 Aligned_cols=217 Identities=14% Similarity=0.157 Sum_probs=134.3
Q ss_pred EEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEE-EEEC-CCCEEEEEECCCCeEEEEecCCCCC
Q 001380 624 RIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLY-VADT-ENHALREIDFVNDTVRTLAGNGTKG 701 (1089)
Q Consensus 624 ~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~ly-VaD~-~n~~I~~~d~~~g~v~~~ag~g~~~ 701 (1089)
+|.+.|.+|.....+...+. .....+++|+|+.|+ +++. ++..|++++++++..+.+.... +
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~--------------~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~--g 243 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSRE--------------PILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFE--G 243 (430)
T ss_pred EEEEECCCCCCceEEecCCC--------------ceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCC--C
Confidence 67777888765554433211 125668889998764 4443 3468999999988877765211 1
Q ss_pred CCCCCCCcccccccCCceeEEEecCCCEEEEEE--CCCcEEEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCceEE
Q 001380 702 SDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAM--AGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGIS 779 (1089)
Q Consensus 702 ~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad--~~~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~gla 779 (1089)
.....+|+|+|+.|+++. .++..|+.+|..++..+.+.... ......+
T Consensus 244 ---------------~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~---------------~~~~~~~ 293 (430)
T PRK00178 244 ---------------LNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNHP---------------AIDTEPF 293 (430)
T ss_pred ---------------CcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEcccCC---------------CCcCCeE
Confidence 112467999998887654 34558999999988877664211 0123457
Q ss_pred EcCCCCEEEEEeC--CCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccCCc-EEEEeCC
Q 001380 780 LSPDFMEIYVADS--ESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQ-IYVADSY 856 (1089)
Q Consensus 780 v~~~g~~lyvad~--~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~-lyVaD~~ 856 (1089)
+++||+.|+++.. +...|+.++..++..+.+... +. .....+++++|+ |+++...
T Consensus 294 ~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~-----------~~-----------~~~~~~~Spdg~~i~~~~~~ 351 (430)
T PRK00178 294 WGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFV-----------GN-----------YNARPRLSADGKTLVMVHRQ 351 (430)
T ss_pred ECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecC-----------CC-----------CccceEECCCCCEEEEEEcc
Confidence 8899987766543 234788888877766544211 00 011246788884 5555432
Q ss_pred --CCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCc-EEEEEC--CCCEEEEEeCCCC
Q 001380 857 --NHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGN-LFIADT--NNNIIRYLDLNKE 923 (1089)
Q Consensus 857 --n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~-lyVad~--~n~~I~~~~~~~~ 923 (1089)
...|..+|.+++....+...+ . -....+.++|+ |+++.. +..+|..++.++.
T Consensus 352 ~~~~~l~~~dl~tg~~~~lt~~~-------------~--~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~ 408 (430)
T PRK00178 352 DGNFHVAAQDLQRGSVRILTDTS-------------L--DESPSVAPNGTMLIYATRQQGRGVLMLVSINGR 408 (430)
T ss_pred CCceEEEEEECCCCCEEEccCCC-------------C--CCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 346889999888877764321 0 11236777886 444433 2356888888776
No 282
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.56 E-value=3.5e-07 Score=97.24 Aligned_cols=94 Identities=20% Similarity=0.251 Sum_probs=74.1
Q ss_pred ccCCCEEEEEEec---CCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChh
Q 001380 450 DLKGKVVVLDFWT---YCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMN 526 (1089)
Q Consensus 450 ~~~gk~vll~Fwa---~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~ 526 (1089)
.+++.+.++.|.+ +||++|+.+.|.+.++.+++....+.++.+.. |.+.+
T Consensus 16 ~~~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~---------------------------~~~~~ 68 (215)
T TIGR02187 16 ELKNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDT---------------------------PEDKE 68 (215)
T ss_pred hcCCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCC---------------------------cccHH
Confidence 3455556666888 99999999999999999998543344555521 46779
Q ss_pred HHHHhCCCceeEEEEECCCCcEE-EEecCCCchhhHHHHHHHHHHH
Q 001380 527 LWRELGVNSWPTFAVVGPNGKLL-AQLAGEGHRKDLDDLVEAALLF 571 (1089)
Q Consensus 527 l~~~~~v~~~Pt~~lid~~G~i~-~~~~G~~~~~~l~~~l~~~l~~ 571 (1089)
+++.|+|.++||++++ ++|+.+ .++.|....+++..+|+.++..
T Consensus 69 l~~~~~V~~~Pt~~~f-~~g~~~~~~~~G~~~~~~l~~~i~~~~~~ 113 (215)
T TIGR02187 69 EAEKYGVERVPTTIIL-EEGKDGGIRYTGIPAGYEFAALIEDIVRV 113 (215)
T ss_pred HHHHcCCCccCEEEEE-eCCeeeEEEEeecCCHHHHHHHHHHHHHh
Confidence 9999999999999999 467776 4889988888999999877643
No 283
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.56 E-value=7.9e-05 Score=87.29 Aligned_cols=226 Identities=15% Similarity=0.161 Sum_probs=141.3
Q ss_pred CCeEEEEe-CC--CCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCE-EEEEECC--CCEEEEEE
Q 001380 612 NNRLFISD-SN--HNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNL-LYVADTE--NHALREID 685 (1089)
Q Consensus 612 ~g~L~vsd-~~--~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~-lyVaD~~--n~~I~~~d 685 (1089)
...+||+. .+ ..+|++.|.||....++-..+. -....++|+|+. +|++... +..|+++|
T Consensus 155 ~r~~~v~~~~~~~~~~l~~~d~dg~~~~~~~~~~~---------------~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~d 219 (419)
T PRK04043 155 KRKVVFSKYTGPKKSNIVLADYTLTYQKVIVKGGL---------------NIFPKWANKEQTAFYYTSYGERKPTLYKYN 219 (419)
T ss_pred eeEEEEEEccCCCcceEEEECCCCCceeEEccCCC---------------eEeEEECCCCCcEEEEEEccCCCCEEEEEE
Confidence 34566665 23 4578888888876554433211 135667888874 6765443 57899999
Q ss_pred CCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEEC--CCcEEEEEECCCCeEEEEeCCCccccCC
Q 001380 686 FVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMA--GQHQIWEHSTVDGVTRAFSGDGYERNLN 763 (1089)
Q Consensus 686 ~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~--~~~~I~~~~~~~g~~~~~~g~g~~~~~~ 763 (1089)
+.+|..+.+.... + ......|+|+|+.|+++.. ++.+||.++..++..+.+....
T Consensus 220 l~tg~~~~lt~~~--g---------------~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~------ 276 (419)
T PRK04043 220 LYTGKKEKIASSQ--G---------------MLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYP------ 276 (419)
T ss_pred CCCCcEEEEecCC--C---------------cEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCC------
Confidence 9999888886311 1 1123458999988877653 4578999999888777664211
Q ss_pred CCCCCCccccCCceEEEcCCCCEEEEEeC--CCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceE
Q 001380 764 GSSSLNTSFAQPSGISLSPDFMEIYVADS--ESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLG 841 (1089)
Q Consensus 764 g~~~~~~~~~~P~glav~~~g~~lyvad~--~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~g 841 (1089)
. .-....++|||+.||++.. +...|++++.+++..+.+.-. |. . .
T Consensus 277 ------~---~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-----------g~---------~-~--- 323 (419)
T PRK04043 277 ------G---IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-----------GK---------N-N--- 323 (419)
T ss_pred ------C---ccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-----------CC---------c-C---
Confidence 0 0112368999988877653 344799999988777544210 10 0 1
Q ss_pred EEEccCCc--EEEEeCC-------CCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCc-E-EEEEC
Q 001380 842 VYCAKNGQ--IYVADSY-------NHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGN-L-FIADT 910 (1089)
Q Consensus 842 va~~~~G~--lyVaD~~-------n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~-l-yVad~ 910 (1089)
..++|||+ +|++... ...|..+|.+++....+...+ ..+ ...+.+||+ | |.++.
T Consensus 324 ~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~-------------~~~--~p~~SPDG~~I~f~~~~ 388 (419)
T PRK04043 324 SSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTANG-------------VNQ--FPRFSSDGGSIMFIKYL 388 (419)
T ss_pred ceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCCC-------------CcC--CeEECCCCCEEEEEEcc
Confidence 26788885 3444332 158999999888877775321 111 246778886 4 44443
Q ss_pred CC-CEEEEEeCCCC
Q 001380 911 NN-NIIRYLDLNKE 923 (1089)
Q Consensus 911 ~n-~~I~~~~~~~~ 923 (1089)
.. ..|..+++++.
T Consensus 389 ~~~~~L~~~~l~g~ 402 (419)
T PRK04043 389 GNQSALGIIRLNYN 402 (419)
T ss_pred CCcEEEEEEecCCC
Confidence 33 45889999887
No 284
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=98.55 E-value=3.3e-05 Score=89.46 Aligned_cols=174 Identities=17% Similarity=0.292 Sum_probs=105.9
Q ss_pred cCCcceeEEeeCCCEEEEEECCCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecC------CCE
Q 001380 656 FNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPI------NEK 729 (1089)
Q Consensus 656 f~~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~------g~~ 729 (1089)
|..|.+|++.|+|+ +||+....++|++++..++..+.+.+....-. ......+.|||++|+ +++
T Consensus 29 L~~Pw~maflPDG~-llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~---------~~ge~GLlglal~PdF~~~~~n~~ 98 (454)
T TIGR03606 29 LNKPWALLWGPDNQ-LWVTERATGKILRVNPETGEVKVVFTLPEIVN---------DAQHNGLLGLALHPDFMQEKGNPY 98 (454)
T ss_pred CCCceEEEEcCCCe-EEEEEecCCEEEEEeCCCCceeeeecCCceec---------cCCCCceeeEEECCCccccCCCcE
Confidence 67999999999997 99999877899999877665554443221100 001346889999975 358
Q ss_pred EEEEECC---------CcEEEEEECCCC------eEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCC
Q 001380 730 VYIAMAG---------QHQIWEHSTVDG------VTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSES 794 (1089)
Q Consensus 730 lyvad~~---------~~~I~~~~~~~g------~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~ 794 (1089)
||++-+. ..+|.++..... ....+.+. .. .....-..|++++|| .|||+--..
T Consensus 99 lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~l---------P~--~~~H~GgrI~FgPDG-~LYVs~GD~ 166 (454)
T TIGR03606 99 VYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGL---------PA--GNDHNGGRLVFGPDG-KIYYTIGEQ 166 (454)
T ss_pred EEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecC---------CC--CCCcCCceEEECCCC-cEEEEECCC
Confidence 9998522 457877765421 11122211 00 112345578999998 899964332
Q ss_pred --------------------------------CeEEEEEcCCCCeEEEecCCCCCC---CCccccCCCCCccccccccCc
Q 001380 795 --------------------------------SSIRALNLKTGGSRLLAGGDPIFP---DNLFKFGDRDGMGSEVLLQHP 839 (1089)
Q Consensus 795 --------------------------------~~I~~~~~~~~~~~~~~g~~~~~~---~~l~~~g~~dg~~~~~~l~~P 839 (1089)
++|.|+++++. +..++|... ..++++| +.+|
T Consensus 167 g~~~~~n~~~~~~aQ~~~~~~~~~~~d~~~~~GkILRin~DGs----iP~dNPf~~g~~~eIyA~G----------~RNp 232 (454)
T TIGR03606 167 GRNQGANFFLPNQAQHTPTQQELNGKDYHAYMGKVLRLNLDGS----IPKDNPSINGVVSHIFTYG----------HRNP 232 (454)
T ss_pred CCCCcccccCcchhccccccccccccCcccCceEEEEEcCCCC----CCCCCCccCCCcceEEEEe----------cccc
Confidence 24555555431 111112111 1244555 4489
Q ss_pred eEEEEccCCcEEEEeCCC---CEEEEEeC
Q 001380 840 LGVYCAKNGQIYVADSYN---HKIKKLDP 865 (1089)
Q Consensus 840 ~gva~~~~G~lyVaD~~n---~~I~~~d~ 865 (1089)
.|++++++|.||++|.+. ..|.++.+
T Consensus 233 ~Gla~dp~G~Lw~~e~Gp~~~DEiN~I~~ 261 (454)
T TIGR03606 233 QGLAFTPDGTLYASEQGPNSDDELNIIVK 261 (454)
T ss_pred ceeEECCCCCEEEEecCCCCCcEEEEecc
Confidence 999999999999999764 45555543
No 285
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=98.55 E-value=2e-07 Score=111.91 Aligned_cols=90 Identities=18% Similarity=0.397 Sum_probs=76.5
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCC--EEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHH
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMP--FTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWR 529 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~--v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~ 529 (1089)
++++++|+|||+||++|+.+.|.+.++++++.+.+ +.++.|.+ +.+.++++
T Consensus 17 ~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~---------------------------~~~~~l~~ 69 (462)
T TIGR01130 17 SHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDA---------------------------TEEKDLAQ 69 (462)
T ss_pred cCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEEC---------------------------CCcHHHHH
Confidence 56889999999999999999999999999887544 88888854 44568999
Q ss_pred HhCCCceeEEEEECCCCcE-EEEecCCCchhhHHHHHHHHH
Q 001380 530 ELGVNSWPTFAVVGPNGKL-LAQLAGEGHRKDLDDLVEAAL 569 (1089)
Q Consensus 530 ~~~v~~~Pt~~lid~~G~i-~~~~~G~~~~~~l~~~l~~~l 569 (1089)
.|+|.++|+++++ ++|+. +..+.|..+.+.+.+++...+
T Consensus 70 ~~~i~~~Pt~~~~-~~g~~~~~~~~g~~~~~~l~~~i~~~~ 109 (462)
T TIGR01130 70 KYGVSGYPTLKIF-RNGEDSVSDYNGPRDADGIVKYMKKQS 109 (462)
T ss_pred hCCCccccEEEEE-eCCccceeEecCCCCHHHHHHHHHHhc
Confidence 9999999999999 67776 778899988888888887655
No 286
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=98.54 E-value=8.2e-07 Score=98.38 Aligned_cols=74 Identities=11% Similarity=0.084 Sum_probs=57.5
Q ss_pred CCCCCHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCc--EEecCcccCCHHHHHhc
Q 001380 220 NLKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPS--LIRKEIGSVSLNDILTG 297 (1089)
Q Consensus 220 ~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d--~vi~dl~el~i~~ll~~ 297 (1089)
.+--|...++.+++++|++++++++|||+.||+.|-+.+| ..|..+...+++++. ++ .++.+-.+=.+...|+.
T Consensus 185 ~g~sKg~al~~l~~~~gi~~~~v~afGD~~NDi~Ml~~ag---~~vAm~Na~~~vK~~-A~~~~v~~~n~edGva~~l~~ 260 (272)
T PRK15126 185 VGCNKGAALAVLSQHLGLSLADCMAFGDAMNDREMLGSVG---RGFIMGNAMPQLRAE-LPHLPVIGHCRNQAVSHYLTH 260 (272)
T ss_pred CCCChHHHHHHHHHHhCCCHHHeEEecCCHHHHHHHHHcC---CceeccCChHHHHHh-CCCCeecCCCcchHHHHHHHH
Confidence 3456788899999999999999999999999999999999 455566667777663 44 37777666556666644
No 287
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=98.54 E-value=1.8e-06 Score=91.09 Aligned_cols=100 Identities=10% Similarity=0.019 Sum_probs=69.4
Q ss_pred CCCccHHHHHH-HHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcC-CccC-CC---C---CHHHHHHHHHHc
Q 001380 165 IGFPGALELIN-QCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSAD-AFEN-LK---P---APDIFLSASKIL 235 (1089)
Q Consensus 165 ~~~pG~~~lL~-~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~-~~~~-~K---P---~~~~~~~~l~~l 235 (1089)
.++||+.++|+ .++++|++++|+||.....++.+.+..++. . .+.+++.+ ++.. ++ + ..+=..++.+.+
T Consensus 94 ~l~pga~e~L~~~l~~~G~~v~IvSas~~~~~~~ia~~~~~~-~-~~~~i~t~le~~~gg~~~g~~c~g~~Kv~rl~~~~ 171 (210)
T TIGR01545 94 TAFPLVAERLRQYLESSDADIWLITGSPQPLVEAVYFDSNFI-H-RLNLIASQIERGNGGWVLPLRCLGHEKVAQLEQKI 171 (210)
T ss_pred CCCccHHHHHHHHHHhCCCEEEEEcCCcHHHHHHHHHhcccc-c-cCcEEEEEeEEeCCceEcCccCCChHHHHHHHHHh
Confidence 57999999996 789899999999999999999999887662 2 23444443 1100 11 0 011122233344
Q ss_pred CCCCCcEEEEcCChhhHHHHHHcCCeEEEEcC
Q 001380 236 NVPTSECIVIEDALAGVQAAKAAQMRCIAVTT 267 (1089)
Q Consensus 236 gv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~ 267 (1089)
+.+.+.+.+.||+.+|+.+...+| ..+.|+.
T Consensus 172 ~~~~~~~~aYsDS~~D~pmL~~a~-~~~~Vnp 202 (210)
T TIGR01545 172 GSPLKLYSGYSDSKQDNPLLAFCE-HRWRVSK 202 (210)
T ss_pred CCChhheEEecCCcccHHHHHhCC-CcEEECc
Confidence 556678899999999999999999 4466654
No 288
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.54 E-value=0.00018 Score=85.13 Aligned_cols=218 Identities=17% Similarity=0.212 Sum_probs=134.9
Q ss_pred CEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEE-E-CCCCEEEEEECCCCeEEEEecCCCC
Q 001380 623 NRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVA-D-TENHALREIDFVNDTVRTLAGNGTK 700 (1089)
Q Consensus 623 ~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVa-D-~~n~~I~~~d~~~g~v~~~ag~g~~ 700 (1089)
.+|.+.|.+|...+.+..... .-...+++|+|+.|.++ . .+...|+.+++.+|..+.+.....
T Consensus 179 ~~l~~~d~dg~~~~~lt~~~~--------------~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~- 243 (429)
T PRK03629 179 YELRVSDYDGYNQFVVHRSPQ--------------PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPR- 243 (429)
T ss_pred eeEEEEcCCCCCCEEeecCCC--------------ceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCC-
Confidence 467777877765554433211 23577899999766544 3 245689999998887776652110
Q ss_pred CCCCCCCCcccccccCCceeEEEecCCCEEEEEEC--CCcEEEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCceE
Q 001380 701 GSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMA--GQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGI 778 (1089)
Q Consensus 701 ~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~--~~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~gl 778 (1089)
....++|+|+|..|+++.. ++.+||.+|..++.++.+.... ......
T Consensus 244 ----------------~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~---------------~~~~~~ 292 (429)
T PRK03629 244 ----------------HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGR---------------SNNTEP 292 (429)
T ss_pred ----------------CcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCC---------------CCcCce
Confidence 1124689999998888643 4457999999988777664211 123467
Q ss_pred EEcCCCCEEE-EEeC-CCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccCCc-EEEEeC
Q 001380 779 SLSPDFMEIY-VADS-ESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQ-IYVADS 855 (1089)
Q Consensus 779 av~~~g~~ly-vad~-~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~-lyVaD~ 855 (1089)
+++|||+.|+ +++. +...|+.++++++..+.+.... ......++++||+ |+++..
T Consensus 293 ~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~----------------------~~~~~~~~SpDG~~Ia~~~~ 350 (429)
T PRK03629 293 TWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEG----------------------SQNQDADVSSDGKFMVMVSS 350 (429)
T ss_pred EECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCC----------------------CCccCEEECCCCCEEEEEEc
Confidence 8999998774 4443 2347888888877665542210 0122456788885 444433
Q ss_pred --CCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCc-EEEEECC--CCEEEEEeCCCC
Q 001380 856 --YNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGN-LFIADTN--NNIIRYLDLNKE 923 (1089)
Q Consensus 856 --~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~-lyVad~~--n~~I~~~~~~~~ 923 (1089)
....|..+|.+++....+.... .. ....+.+||+ |+++... ...+..+++++.
T Consensus 351 ~~g~~~I~~~dl~~g~~~~Lt~~~-------------~~--~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~ 408 (429)
T PRK03629 351 NGGQQHIAKQDLATGGVQVLTDTF-------------LD--ETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGR 408 (429)
T ss_pred cCCCceEEEEECCCCCeEEeCCCC-------------CC--CCceECCCCCEEEEEEcCCCceEEEEEECCCC
Confidence 2356888999888877775311 00 1235678886 4444332 235778888776
No 289
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=98.52 E-value=2.2e-07 Score=86.31 Aligned_cols=88 Identities=20% Similarity=0.255 Sum_probs=70.7
Q ss_pred CCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHhC
Q 001380 453 GKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRELG 532 (1089)
Q Consensus 453 gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~~ 532 (1089)
|+++++.||++||++|....|.+.+++++|+++ +.++.|.. |....+++.||
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~-v~f~~vd~---------------------------~~~~~~~~~~~ 63 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGK-LLFVVVDA---------------------------DDFGRHLEYFG 63 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCe-EEEEEEch---------------------------HhhHHHHHHcC
Confidence 789999999999999999999999999999865 88888843 34457899999
Q ss_pred CC--ceeEEEEECCC-CcEEEEecCCCchhhHHHHHHHH
Q 001380 533 VN--SWPTFAVVGPN-GKLLAQLAGEGHRKDLDDLVEAA 568 (1089)
Q Consensus 533 v~--~~Pt~~lid~~-G~i~~~~~G~~~~~~l~~~l~~~ 568 (1089)
+. .+|++++++.+ |+......+..+.+.+.++|+..
T Consensus 64 i~~~~~P~~~~~~~~~~~k~~~~~~~~~~~~l~~fi~~~ 102 (103)
T cd02982 64 LKEEDLPVIAIINLSDGKKYLMPEEELTAESLEEFVEDF 102 (103)
T ss_pred CChhhCCEEEEEecccccccCCCccccCHHHHHHHHHhh
Confidence 99 99999999763 44433344445788888887654
No 290
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=98.52 E-value=1.2e-06 Score=97.07 Aligned_cols=73 Identities=14% Similarity=0.055 Sum_probs=57.9
Q ss_pred CCCCHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccCCHHHHHhc
Q 001380 221 LKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDILTG 297 (1089)
Q Consensus 221 ~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~i~~ll~~ 297 (1089)
+-.|...++.+++++|++++++++|||+.||+.|.+.+|. .|..+...+++++ .+++|..+-.+=.+..+|..
T Consensus 194 gvsKg~al~~l~~~~gi~~~~v~afGD~~NDi~Ml~~ag~---~vAm~NA~~~vK~-~A~~vt~~n~~dGva~~i~~ 266 (270)
T PRK10513 194 RVNKGTGVKSLAEHLGIKPEEVMAIGDQENDIAMIEYAGV---GVAMGNAIPSVKE-VAQFVTKSNLEDGVAFAIEK 266 (270)
T ss_pred CCChHHHHHHHHHHhCCCHHHEEEECCchhhHHHHHhCCc---eEEecCccHHHHH-hcCeeccCCCcchHHHHHHH
Confidence 3445667889999999999999999999999999999995 4555656677766 58999888777666666543
No 291
>PTZ00062 glutaredoxin; Provisional
Probab=98.52 E-value=3.1e-07 Score=95.00 Aligned_cols=75 Identities=15% Similarity=0.139 Sum_probs=62.8
Q ss_pred CEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHhCC
Q 001380 454 KVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRELGV 533 (1089)
Q Consensus 454 k~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~~v 533 (1089)
+.+|++|||+||++|+.+.|.|.+|+++|++ +.++-|. .+ |+|
T Consensus 18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~--~~F~~V~-----------------------------~d------~~V 60 (204)
T PTZ00062 18 GKLVLYVKSSKEPEYEQLMDVCNALVEDFPS--LEFYVVN-----------------------------LA------DAN 60 (204)
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHCCC--cEEEEEc-----------------------------cc------cCc
Confidence 5578999999999999999999999999974 7888882 22 999
Q ss_pred CceeEEEEECCCCcEEEEecCCCchhhHHHHHHH
Q 001380 534 NSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEA 567 (1089)
Q Consensus 534 ~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~ 567 (1089)
.++|+++++ ++|+.+.++.|. ++..+...+..
T Consensus 61 ~~vPtfv~~-~~g~~i~r~~G~-~~~~~~~~~~~ 92 (204)
T PTZ00062 61 NEYGVFEFY-QNSQLINSLEGC-NTSTLVSFIRG 92 (204)
T ss_pred ccceEEEEE-ECCEEEeeeeCC-CHHHHHHHHHH
Confidence 999999999 799999999886 35556655544
No 292
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=98.52 E-value=3e-07 Score=98.44 Aligned_cols=61 Identities=20% Similarity=0.187 Sum_probs=56.9
Q ss_pred CccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHH
Q 001380 167 FPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIF 228 (1089)
Q Consensus 167 ~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~ 228 (1089)
-||+.++|++|+++|++++|+|++.++++...++++|+. .+|+.|+++++....||.++..
T Consensus 148 dPgV~EaL~~LkekGikLaIaTS~~Re~v~~~L~~lGLd-~YFdvIIs~Gdv~~~kp~~e~~ 208 (301)
T TIGR01684 148 DPRIYDSLTELKKRGCILVLWSYGDRDHVVESMRKVKLD-RYFDIIISGGHKAEEYSTMSTE 208 (301)
T ss_pred CHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCCC-cccCEEEECCccccCCCCcccc
Confidence 389999999999999999999999999999999999997 9999999999999999988654
No 293
>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=1e-06 Score=84.45 Aligned_cols=126 Identities=15% Similarity=0.231 Sum_probs=96.4
Q ss_pred cCCCCCCCCCCccccCCCCCceeecccccCCCEEEEEEe--cCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCC-C
Q 001380 423 NRKTTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFW--TYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFD-N 499 (1089)
Q Consensus 423 ~~~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fw--a~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~-~ 499 (1089)
....|+.+|.|.... .-..+.+ .|+.|.-+.|-|- +...|.|..|+-.+.+++.+|..+++..|+.|++..+ +
T Consensus 5 ~l~lgd~~PNfea~T---t~g~i~f-hd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRnvKlialS~d~vesH 80 (224)
T KOG0854|consen 5 RLRLGDTVPNFEADT---TVGKIKF-HDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKRNVKLIALSVDDVESH 80 (224)
T ss_pred cccccCcCCCccccc---cccceeh-hhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhhcCceEEEeehhhHHHH
Confidence 456899999999632 4456888 7887765444444 7889999999999999999999999999999985321 2
Q ss_pred hhcHHHHHHHHHHcC--CccceeecCChhHHHHhCCC------------ceeEEEEECCCCcEEEEe
Q 001380 500 EKDLEAIRNAVLRYG--ISHPVVNDGDMNLWRELGVN------------SWPTFAVVGPNGKLLAQL 552 (1089)
Q Consensus 500 ~~~~~~~~~~~~~~~--~~~~v~~d~~~~l~~~~~v~------------~~Pt~~lid~~G~i~~~~ 552 (1089)
.+-.+.++++.+... ++||++.|+..+++-.|+.- .....|+||++.+++..+
T Consensus 81 ~~Wi~DIks~~~~~~~~~~yPIIaD~~rela~~l~MlD~~e~~~~~~~~T~Ravfvi~pdkKirLs~ 147 (224)
T KOG0854|consen 81 KDWIKDIKSYAKVKNHSVPYPIIADPNRELAFLLNMLDPEEKKNIGDGKTVRAVFVIDPDKKIRLSF 147 (224)
T ss_pred HHHHHHHHHHHhccCCCCCCCeecCCchhhhhhhcccCHhHcCCCCCCceEEEEEEECCCceEEEEE
Confidence 233344455555555 88999999999999988741 256889999999998774
No 294
>PTZ00102 disulphide isomerase; Provisional
Probab=98.46 E-value=4.8e-07 Score=109.03 Aligned_cols=89 Identities=19% Similarity=0.435 Sum_probs=74.2
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCC--CEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHH
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDM--PFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWR 529 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~--~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~ 529 (1089)
+++.+||+|||+||++|+.+.|.+.++++++++. ++.+..|.+ +.+..+++
T Consensus 48 ~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~---------------------------~~~~~l~~ 100 (477)
T PTZ00102 48 ENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDA---------------------------TEEMELAQ 100 (477)
T ss_pred cCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEEC---------------------------CCCHHHHH
Confidence 5789999999999999999999999999887643 477777743 45678999
Q ss_pred HhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHH
Q 001380 530 ELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAAL 569 (1089)
Q Consensus 530 ~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l 569 (1089)
+|+|.++|+++++.. |+.+ .+.|..+.+.+.+++.+.+
T Consensus 101 ~~~i~~~Pt~~~~~~-g~~~-~y~g~~~~~~l~~~l~~~~ 138 (477)
T PTZ00102 101 EFGVRGYPTIKFFNK-GNPV-NYSGGRTADGIVSWIKKLT 138 (477)
T ss_pred hcCCCcccEEEEEEC-CceE-EecCCCCHHHHHHHHHHhh
Confidence 999999999999964 4544 7889889998988887755
No 295
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.46 E-value=0.0002 Score=78.21 Aligned_cols=235 Identities=19% Similarity=0.267 Sum_probs=149.0
Q ss_pred CceEEEeecCCeEEEEeCCCCEEEEEeCCC-CEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEE
Q 001380 603 PGKLAIDILNNRLFISDSNHNRIVVTDLDG-NFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHAL 681 (1089)
Q Consensus 603 P~~vavd~~~g~L~vsd~~~~~I~~~~~~g-~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I 681 (1089)
...+++++ +++++++-..++.|..++.+. +....+... . .....+.+.++++.++++. .++.|
T Consensus 12 i~~~~~~~-~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~-~-------------~~i~~~~~~~~~~~l~~~~-~~~~i 75 (289)
T cd00200 12 VTCVAFSP-DGKLLATGSGDGTIKVWDLETGELLRTLKGH-T-------------GPVRDVAASADGTYLASGS-SDKTI 75 (289)
T ss_pred EEEEEEcC-CCCEEEEeecCcEEEEEEeeCCCcEEEEecC-C-------------cceeEEEECCCCCEEEEEc-CCCeE
Confidence 34677887 445555555578899998763 333333222 1 1225888888887555554 47889
Q ss_pred EEEECCCC-eEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEE-EEeCCCcc
Q 001380 682 REIDFVND-TVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTR-AFSGDGYE 759 (1089)
Q Consensus 682 ~~~d~~~g-~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~-~~~g~g~~ 759 (1089)
+.++..++ .+..+.+.. .....+.+++++ .++++....+.|..|+..++... .+.+
T Consensus 76 ~i~~~~~~~~~~~~~~~~-----------------~~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~---- 133 (289)
T cd00200 76 RLWDLETGECVRTLTGHT-----------------SYVSSVAFSPDG-RILSSSSRDKTIKVWDVETGKCLTTLRG---- 133 (289)
T ss_pred EEEEcCcccceEEEeccC-----------------CcEEEEEEcCCC-CEEEEecCCCeEEEEECCCcEEEEEecc----
Confidence 99998774 333333111 246788999875 56666656789999998755433 3321
Q ss_pred ccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeE-EEecCCCCCCCCccccCCCCCccccccccC
Q 001380 760 RNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSR-LLAGGDPIFPDNLFKFGDRDGMGSEVLLQH 838 (1089)
Q Consensus 760 ~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~-~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~ 838 (1089)
.-.....+++++++ .++++....+.|+.++...+... .+... -..
T Consensus 134 -----------~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~~~~~~~~~~~----------------------~~~ 179 (289)
T cd00200 134 -----------HTDWVNSVAFSPDG-TFVASSSQDGTIKLWDLRTGKCVATLTGH----------------------TGE 179 (289)
T ss_pred -----------CCCcEEEEEEcCcC-CEEEEEcCCCcEEEEEccccccceeEecC----------------------ccc
Confidence 11246789999986 45555555788999988744322 11110 113
Q ss_pred ceEEEEccCCcEEEEeCCCCEEEEEeCCCCeEEEEe-ccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEEE
Q 001380 839 PLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLA-GIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRY 917 (1089)
Q Consensus 839 P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~v~t~~-g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~ 917 (1089)
...++++++|+.+++-..++.|..+|..++...... + .-.....+++++++.++++...++.|..
T Consensus 180 i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~--------------~~~~i~~~~~~~~~~~~~~~~~~~~i~i 245 (289)
T cd00200 180 VNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRG--------------HENGVNSVAFSPDGYLLASGSEDGTIRV 245 (289)
T ss_pred cceEEECCCcCEEEEecCCCcEEEEECCCCceecchhh--------------cCCceEEEEEcCCCcEEEEEcCCCcEEE
Confidence 567889999854444444889999998754433221 1 1224678889888888888877899999
Q ss_pred EeCCCC
Q 001380 918 LDLNKE 923 (1089)
Q Consensus 918 ~~~~~~ 923 (1089)
++....
T Consensus 246 ~~~~~~ 251 (289)
T cd00200 246 WDLRTG 251 (289)
T ss_pred EEcCCc
Confidence 998764
No 296
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.46 E-value=4.9e-05 Score=80.36 Aligned_cols=221 Identities=18% Similarity=0.285 Sum_probs=139.6
Q ss_pred CcceeEEeeCCCEEEEEECCCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCC
Q 001380 658 RPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQ 737 (1089)
Q Consensus 658 ~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~ 737 (1089)
+-.+|+++|+.+.||..-..--.|..+++++..++++.-.| +..|-+|++-..| .+.+++...
T Consensus 87 nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g----------------~~DpE~Ieyig~n-~fvi~dER~ 149 (316)
T COG3204 87 NVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTG----------------FSDPETIEYIGGN-QFVIVDERD 149 (316)
T ss_pred cccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccc----------------cCChhHeEEecCC-EEEEEehhc
Confidence 46899999999999998766679999999999999997555 5688899998644 777888888
Q ss_pred cEEEEEECCCC-eEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCC-CeEEEEEcCCCCeEEEecCCC
Q 001380 738 HQIWEHSTVDG-VTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSES-SSIRALNLKTGGSRLLAGGDP 815 (1089)
Q Consensus 738 ~~I~~~~~~~g-~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~-~~I~~~~~~~~~~~~~~g~~~ 815 (1089)
.+++.+..+.+ .+..+.... .. .......+.+| .|+|.++.++.+||+-..+ -.|+.++............++
T Consensus 150 ~~l~~~~vd~~t~~~~~~~~~-i~-L~~~~k~N~Gf---EGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~ 224 (316)
T COG3204 150 RALYLFTVDADTTVISAKVQK-IP-LGTTNKKNKGF---EGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDP 224 (316)
T ss_pred ceEEEEEEcCCccEEeccceE-Ee-ccccCCCCcCc---eeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCc
Confidence 88877655433 222111100 00 00000112444 4999999998999986432 244444422111111111110
Q ss_pred CCCCCccccCCCCCccccccccCceEEEEcc-CCcEEEEeCCCCEEEEEeCCCCeEEEEecc-CCCCCCCCcccccccCC
Q 001380 816 IFPDNLFKFGDRDGMGSEVLLQHPLGVYCAK-NGQIYVADSYNHKIKKLDPASNRVSTLAGI-GKAGFKDGAALAAQLSE 893 (1089)
Q Consensus 816 ~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~-~G~lyVaD~~n~~I~~~d~~~~~v~t~~g~-g~~g~~~g~~~~~~l~~ 893 (1089)
....+..+..-.|+.+++ .|+++|-..-.+++..+|.+++.+..+.-+ |..| .......
T Consensus 225 -------------~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~g------L~~dipq 285 (316)
T COG3204 225 -------------TADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHG------LSSDIPQ 285 (316)
T ss_pred -------------ccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCC------CcccCCC
Confidence 000112234456778875 578888877889999999988766665533 2222 3345778
Q ss_pred CceEEEccCCcEEEEECCCCEEEEEeC
Q 001380 894 PAGIIEAQNGNLFIADTNNNIIRYLDL 920 (1089)
Q Consensus 894 P~gi~vd~~G~lyVad~~n~~I~~~~~ 920 (1089)
|.||++|.+|+|||+.-- |...+|.+
T Consensus 286 aEGiamDd~g~lYIvSEP-nlfy~F~~ 311 (316)
T COG3204 286 AEGIAMDDDGNLYIVSEP-NLFYRFTP 311 (316)
T ss_pred cceeEECCCCCEEEEecC-Ccceeccc
Confidence 999999999999998643 34444443
No 297
>PRK01742 tolB translocation protein TolB; Provisional
Probab=98.44 E-value=0.00033 Score=83.00 Aligned_cols=219 Identities=17% Similarity=0.232 Sum_probs=129.6
Q ss_pred CEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEEC--CCCEEEEEECCCCeEEEEecCCCC
Q 001380 623 NRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADT--ENHALREIDFVNDTVRTLAGNGTK 700 (1089)
Q Consensus 623 ~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~--~n~~I~~~d~~~g~v~~~ag~g~~ 700 (1089)
.+|.++|.+|.....+..... .-..++++|+|+.|+.+.. ++..|+.+|+.++..+.+....
T Consensus 184 ~~i~i~d~dg~~~~~lt~~~~--------------~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~-- 247 (429)
T PRK01742 184 YEVRVADYDGFNQFIVNRSSQ--------------PLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFR-- 247 (429)
T ss_pred EEEEEECCCCCCceEeccCCC--------------ccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCC--
Confidence 477778888765554433211 2356789999987665532 3468999999888766664211
Q ss_pred CCCCCCCCcccccccCCceeEEEecCCCEEEEEE--CCCcEEEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCceE
Q 001380 701 GSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAM--AGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGI 778 (1089)
Q Consensus 701 ~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad--~~~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~gl 778 (1089)
+ .-..++|+|+|+.|+++. .++-+||.+|..++..+.+.+.. ......
T Consensus 248 g---------------~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~---------------~~~~~~ 297 (429)
T PRK01742 248 G---------------HNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLTSGA---------------GNNTEP 297 (429)
T ss_pred C---------------ccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEeeccCC---------------CCcCCE
Confidence 1 112478999998888764 33457899998888776664311 123467
Q ss_pred EEcCCCCEEEEEeC--CCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccCCc-EEEEeC
Q 001380 779 SLSPDFMEIYVADS--ESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQ-IYVADS 855 (1089)
Q Consensus 779 av~~~g~~lyvad~--~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~-lyVaD~ 855 (1089)
+++|||+.|+++.. +.-.|+.++..++....+ +.. + ...++++||+ ++++..
T Consensus 298 ~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~--------------~----------~~~~~SpDG~~ia~~~~ 352 (429)
T PRK01742 298 SWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGR--------------G----------YSAQISADGKTLVMING 352 (429)
T ss_pred EECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCC--------------C----------CCccCCCCCCEEEEEcC
Confidence 89999987776543 344667777665544333 110 0 1245678885 444432
Q ss_pred CCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCC---EEEEEeCCCCCceEEEEe
Q 001380 856 YNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNN---IIRYLDLNKEEPELQTLE 931 (1089)
Q Consensus 856 ~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~---~I~~~~~~~~~~~~~~l~ 931 (1089)
..|.++|..++....+.... .-..+++.++|+.++..+..+ .+..++.++. .+..+.
T Consensus 353 --~~i~~~Dl~~g~~~~lt~~~---------------~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~--~~~~l~ 412 (429)
T PRK01742 353 --DNVVKQDLTSGSTEVLSSTF---------------LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGR--FKARLP 412 (429)
T ss_pred --CCEEEEECCCCCeEEecCCC---------------CCCCceECCCCCEEEEEEcCCCceEEEEEECCCC--ceEEcc
Confidence 56777998888766553210 012456788886333322222 2344455665 445554
No 298
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.43 E-value=0.00016 Score=85.46 Aligned_cols=219 Identities=17% Similarity=0.154 Sum_probs=131.9
Q ss_pred CCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECC--CCEEEEEECCCCeEEEEecCCC
Q 001380 622 HNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTE--NHALREIDFVNDTVRTLAGNGT 699 (1089)
Q Consensus 622 ~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~--n~~I~~~d~~~g~v~~~ag~g~ 699 (1089)
...|+..|.+|...+.+-..+. .....+++|+|+.|+++... .+.|+.++..++....+.....
T Consensus 169 ~~~l~~~d~~g~~~~~l~~~~~--------------~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~ 234 (417)
T TIGR02800 169 RYELQVADYDGANPQTITRSRE--------------PILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPG 234 (417)
T ss_pred cceEEEEcCCCCCCEEeecCCC--------------ceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCC
Confidence 4457777777655544433211 12345688899877776543 3689999998887766653210
Q ss_pred CCCCCCCCCcccccccCCceeEEEecCCCEEEEEEC--CCcEEEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCce
Q 001380 700 KGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMA--GQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSG 777 (1089)
Q Consensus 700 ~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~--~~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~g 777 (1089)
....++|+|+|+.|+++.. ++..|+.++..++....+.... .....
T Consensus 235 -----------------~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~---------------~~~~~ 282 (417)
T TIGR02800 235 -----------------MNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGP---------------GIDTE 282 (417)
T ss_pred -----------------CccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCCC---------------CCCCC
Confidence 1234789999988887654 3457999998887766554211 01123
Q ss_pred EEEcCCCCEEEEEeC--CCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccCCc-EEEEe
Q 001380 778 ISLSPDFMEIYVADS--ESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQ-IYVAD 854 (1089)
Q Consensus 778 lav~~~g~~lyvad~--~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~-lyVaD 854 (1089)
.+++++|+.|+++.. +...|+.++..++....+.... .....++++++|+ ++++.
T Consensus 283 ~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~----------------------~~~~~~~~spdg~~i~~~~ 340 (417)
T TIGR02800 283 PSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRG----------------------GYNASPSWSPDGDLIAFVH 340 (417)
T ss_pred EEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCC----------------------CCccCeEECCCCCEEEEEE
Confidence 467888877765532 2347899998876665443211 1223467888885 55554
Q ss_pred CC--CCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCc-EEEEECCC--CEEEEEeCCCC
Q 001380 855 SY--NHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGN-LFIADTNN--NIIRYLDLNKE 923 (1089)
Q Consensus 855 ~~--n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~-lyVad~~n--~~I~~~~~~~~ 923 (1089)
.. ..+|..+|..++....+.... .....++.++|+ |+++...+ ..+..++.++.
T Consensus 341 ~~~~~~~i~~~d~~~~~~~~l~~~~---------------~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~ 399 (417)
T TIGR02800 341 REGGGFNIAVMDLDGGGERVLTDTG---------------LDESPSFAPNGRMILYATTRGGRGVLGLVSTDGR 399 (417)
T ss_pred ccCCceEEEEEeCCCCCeEEccCCC---------------CCCCceECCCCCEEEEEEeCCCcEEEEEEECCCc
Confidence 33 348899998887766654211 012335666775 55544332 35666776665
No 299
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.42 E-value=0.00039 Score=81.33 Aligned_cols=206 Identities=17% Similarity=0.222 Sum_probs=149.6
Q ss_pred cCCcceeEEeeCCCEEEEEECCCCEEEEEECCCCeEE-EEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEE
Q 001380 656 FNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTVR-TLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAM 734 (1089)
Q Consensus 656 f~~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~v~-~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad 734 (1089)
+.+-..++++|||. +.++....++|+++|...|+-. |+... -+.-.++.|...| +..++.
T Consensus 350 ~~~i~~l~YSpDgq-~iaTG~eDgKVKvWn~~SgfC~vTFteH-----------------ts~Vt~v~f~~~g-~~llss 410 (893)
T KOG0291|consen 350 SDRITSLAYSPDGQ-LIATGAEDGKVKVWNTQSGFCFVTFTEH-----------------TSGVTAVQFTARG-NVLLSS 410 (893)
T ss_pred ccceeeEEECCCCc-EEEeccCCCcEEEEeccCceEEEEeccC-----------------CCceEEEEEEecC-CEEEEe
Confidence 56778999999998 7888888999999999888744 44321 2356788999888 666676
Q ss_pred CCCcEEEEEECCCCeE-EEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeE-EEec
Q 001380 735 AGQHQIWEHSTVDGVT-RAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSR-LLAG 812 (1089)
Q Consensus 735 ~~~~~I~~~~~~~g~~-~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~-~~~g 812 (1089)
.-.+.|+.||..-... ++|.. ..-.|-+.||+||.|..+...+..+-.|.+++..+|... ++.|
T Consensus 411 SLDGtVRAwDlkRYrNfRTft~--------------P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsG 476 (893)
T KOG0291|consen 411 SLDGTVRAWDLKRYRNFRTFTS--------------PEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSG 476 (893)
T ss_pred ecCCeEEeeeecccceeeeecC--------------CCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcC
Confidence 7788999999765433 33332 112355799999999677777777779999999988765 3433
Q ss_pred CCCCCCCCccccCCCCCccccccccCceEEEEccCCcEEEEeCCCCEEEEEeC--CCCeEEEEeccCCCCCCCCcccccc
Q 001380 813 GDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDP--ASNRVSTLAGIGKAGFKDGAALAAQ 890 (1089)
Q Consensus 813 ~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~lyVaD~~n~~I~~~d~--~~~~v~t~~g~g~~g~~~g~~~~~~ 890 (1089)
+. | --.+++++++|++.++-++...|+..|. ..+++.++.-.
T Consensus 477 HE--------------g--------PVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~-------------- 520 (893)
T KOG0291|consen 477 HE--------------G--------PVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIR-------------- 520 (893)
T ss_pred CC--------------C--------cceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeec--------------
Confidence 21 1 1356899999999999999999998765 45688888632
Q ss_pred cCCCceEEEccCCcEEEEECCCCEEEEEeCCCCCceEEEEee
Q 001380 891 LSEPAGIIEAQNGNLFIADTNNNIIRYLDLNKEEPELQTLEL 932 (1089)
Q Consensus 891 l~~P~gi~vd~~G~lyVad~~n~~I~~~~~~~~~~~~~~l~~ 932 (1089)
..-.++++.|+|.=..+-+-++.|..++.+... .+.++++
T Consensus 521 -sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~-q~~~Idg 560 (893)
T KOG0291|consen 521 -SDVLAVSFRPDGKELAVATLDGQITFFDIKEAV-QVGSIDG 560 (893)
T ss_pred -cceeEEEEcCCCCeEEEEEecceEEEEEhhhce-eeccccc
Confidence 346788999999644444567899999988762 4555554
No 300
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=98.39 E-value=8.1e-07 Score=108.30 Aligned_cols=117 Identities=15% Similarity=0.191 Sum_probs=89.3
Q ss_pred CCCCCccHHHHHHHHHhCC-CeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCc
Q 001380 163 SGIGFPGALELINQCKSKG-LKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSE 241 (1089)
Q Consensus 163 ~~~~~pG~~~lL~~Lk~~G-i~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~ 241 (1089)
...++||+.++|++|+++| ++++++||.....++.+++++|+. .+|..+. .++++ +++++++..+++
T Consensus 382 ~d~~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~a~~i~~~lgi~-~~f~~~~-------p~~K~----~~v~~l~~~~~~ 449 (556)
T TIGR01525 382 RDQLRPEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVAAELGID-EVHAELL-------PEDKL----AIVKELQEEGGV 449 (556)
T ss_pred cccchHhHHHHHHHHHHcCCCeEEEEeCCCHHHHHHHHHHhCCC-eeeccCC-------HHHHH----HHHHHHHHcCCE
Confidence 4578999999999999999 999999999999999999999996 6665431 11222 455555556789
Q ss_pred EEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecC--cccCCHHHHHhc
Q 001380 242 CIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKE--IGSVSLNDILTG 297 (1089)
Q Consensus 242 ~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~d--l~el~i~~ll~~ 297 (1089)
|+||||+.+|+.++++|| ++|.+|. ..+.....+|+++.+ +..+ .+++..
T Consensus 450 v~~vGDg~nD~~al~~A~---vgia~g~-~~~~~~~~Ad~vi~~~~~~~l--~~~i~~ 501 (556)
T TIGR01525 450 VAMVGDGINDAPALAAAD---VGIAMGA-GSDVAIEAADIVLLNDDLSSL--PTAIDL 501 (556)
T ss_pred EEEEECChhHHHHHhhCC---EeEEeCC-CCHHHHHhCCEEEeCCCHHHH--HHHHHH
Confidence 999999999999999999 6677763 334444579999884 4444 555443
No 301
>PRK10976 putative hydrolase; Provisional
Probab=98.39 E-value=2.6e-06 Score=94.11 Aligned_cols=73 Identities=14% Similarity=0.128 Sum_probs=56.4
Q ss_pred CCCCHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcC-CcEEecCcccCCHHHHHh
Q 001380 221 LKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEAS-PSLIRKEIGSVSLNDILT 296 (1089)
Q Consensus 221 ~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~-~d~vi~dl~el~i~~ll~ 296 (1089)
+-.|...++.+++++|++++++++|||+.||+.|.+.+|. .|..+...+++++.. +++|+.+-.+=.+...|.
T Consensus 188 gvsKg~al~~l~~~lgi~~~~viafGD~~NDi~Ml~~ag~---~vAm~NA~~~vK~~A~~~~v~~~n~edGVa~~l~ 261 (266)
T PRK10976 188 GVSKGHALEAVAKKLGYSLKDCIAFGDGMNDAEMLSMAGK---GCIMGNAHQRLKDLLPELEVIGSNADDAVPHYLR 261 (266)
T ss_pred CCChHHHHHHHHHHcCCCHHHeEEEcCCcccHHHHHHcCC---CeeecCCcHHHHHhCCCCeecccCchHHHHHHHH
Confidence 4557888999999999999999999999999999999995 455555667776632 347777766655555554
No 302
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.39 E-value=2e-06 Score=81.51 Aligned_cols=96 Identities=16% Similarity=0.208 Sum_probs=71.5
Q ss_pred cccCCCEEEEEEecCCCcchhhhhhhH---HHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCCh
Q 001380 449 RDLKGKVVVLDFWTYCCINCMHVLPDL---EFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDM 525 (1089)
Q Consensus 449 ~~~~gk~vll~Fwa~wC~~C~~~~p~l---~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~ 525 (1089)
+.-++|+++|+|+++||++|..+.... .++.+.+.+ .+.++.+... + ....
T Consensus 13 Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~-~~v~~~~d~~-----~--------------------~e~~ 66 (114)
T cd02958 13 AKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE-NFIFWQCDID-----S--------------------SEGQ 66 (114)
T ss_pred HHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh-CEEEEEecCC-----C--------------------ccHH
Confidence 344689999999999999999875432 123333332 4666666431 0 1133
Q ss_pred hHHHHhCCCceeEEEEECC-CCcEEEEecCCCchhhHHHHHHHHHH
Q 001380 526 NLWRELGVNSWPTFAVVGP-NGKLLAQLAGEGHRKDLDDLVEAALL 570 (1089)
Q Consensus 526 ~l~~~~~v~~~Pt~~lid~-~G~i~~~~~G~~~~~~l~~~l~~~l~ 570 (1089)
++++.|++.++|++++||+ +|+++.+..|....+++...|+++..
T Consensus 67 ~~~~~~~~~~~P~~~~i~~~~g~~l~~~~G~~~~~~f~~~L~~~~~ 112 (114)
T cd02958 67 RFLQSYKVDKYPHIAIIDPRTGEVLKVWSGNITPEDLLSQLIEFLE 112 (114)
T ss_pred HHHHHhCccCCCeEEEEeCccCcEeEEEcCCCCHHHHHHHHHHHHh
Confidence 5788899999999999999 89999999999999988888877654
No 303
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=98.38 E-value=8.6e-07 Score=107.36 Aligned_cols=119 Identities=16% Similarity=0.218 Sum_probs=91.9
Q ss_pred CCCCCccHHHHHHHHHhCCC-eEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCc
Q 001380 163 SGIGFPGALELINQCKSKGL-KVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSE 241 (1089)
Q Consensus 163 ~~~~~pG~~~lL~~Lk~~Gi-~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~ 241 (1089)
...++||+.++|++|+++|+ +++++||.....++.+++++|++ .+|..+. ..++ ..++++++...++
T Consensus 360 ~d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~~a~~i~~~lgi~-~~f~~~~-------p~~K----~~~i~~l~~~~~~ 427 (536)
T TIGR01512 360 SDEPRPDAAEAIAELKALGIEKVVMLTGDRRAVAERVARELGID-EVHAELL-------PEDK----LEIVKELREKYGP 427 (536)
T ss_pred eccchHHHHHHHHHHHHcCCCcEEEEcCCCHHHHHHHHHHcCCh-hhhhccC-------cHHH----HHHHHHHHhcCCE
Confidence 34679999999999999999 99999999999999999999996 6664332 1122 3466666666689
Q ss_pred EEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEe--cCcccCCHHHHHhcc
Q 001380 242 CIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIR--KEIGSVSLNDILTGG 298 (1089)
Q Consensus 242 ~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi--~dl~el~i~~ll~~~ 298 (1089)
++||||+.+|+.+++++| +++.+|....+.....+|+++ +++.++ .+++...
T Consensus 428 v~~vGDg~nD~~al~~A~---vgia~g~~~~~~~~~~ad~vl~~~~l~~l--~~~i~~~ 481 (536)
T TIGR01512 428 VAMVGDGINDAPALAAAD---VGIAMGASGSDVAIETADVVLLNDDLSRL--PQAIRLA 481 (536)
T ss_pred EEEEeCCHHHHHHHHhCC---EEEEeCCCccHHHHHhCCEEEECCCHHHH--HHHHHHH
Confidence 999999999999999999 467776422333444789988 788777 5555443
No 304
>PHA02125 thioredoxin-like protein
Probab=98.37 E-value=1.6e-06 Score=75.25 Aligned_cols=61 Identities=31% Similarity=0.466 Sum_probs=48.1
Q ss_pred EEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHhCCCce
Q 001380 457 VLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRELGVNSW 536 (1089)
Q Consensus 457 ll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~~v~~~ 536 (1089)
++.||++||++|+...|.|.++. +.++-|.. |...+++++|+|.++
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~-------~~~~~vd~---------------------------~~~~~l~~~~~v~~~ 47 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE-------YTYVDVDT---------------------------DEGVELTAKHHIRSL 47 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh-------heEEeeeC---------------------------CCCHHHHHHcCCcee
Confidence 68999999999999999987652 33455522 456789999999999
Q ss_pred eEEEEECCCCcEEEEecCC
Q 001380 537 PTFAVVGPNGKLLAQLAGE 555 (1089)
Q Consensus 537 Pt~~lid~~G~i~~~~~G~ 555 (1089)
||++ +|+.+.++.|.
T Consensus 48 PT~~----~g~~~~~~~G~ 62 (75)
T PHA02125 48 PTLV----NTSTLDRFTGV 62 (75)
T ss_pred CeEE----CCEEEEEEeCC
Confidence 9976 67877788775
No 305
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.36 E-value=7.2e-05 Score=75.99 Aligned_cols=226 Identities=16% Similarity=0.186 Sum_probs=122.6
Q ss_pred ceEEEeecCCeEEEEeCCCCEEEEEeCCCCEEE--EEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEE
Q 001380 604 GKLAIDILNNRLFISDSNHNRIVVTDLDGNFIV--QIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHAL 681 (1089)
Q Consensus 604 ~~vavd~~~g~L~vsd~~~~~I~~~~~~g~~~~--~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I 681 (1089)
.|+.++...+.||+.|-..+.|.++|...+.+. .|.++...|+. --....|++.++.- |..+ .|
T Consensus 18 Egp~w~~~~~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p~~ag~i-----lpv~~~~q~~~v~~-G~kf--------~i 83 (310)
T KOG4499|consen 18 EGPHWDVERQSLLYVDIEAGEVHRYDIEQNKVYRAKIEGPPSAGFI-----LPVEGGPQEFAVGC-GSKF--------VI 83 (310)
T ss_pred CCCceEEecceEEEEEeccCceehhhhhhhheEEEEEecCcceeEE-----EEecCCCceEEEee-cceE--------EE
Confidence 355677778999999999999999887644433 33333121110 00112344444431 2212 22
Q ss_pred EEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEE-ECCCcEEEEEECCCCeEEEEeCCCccc
Q 001380 682 REIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIA-MAGQHQIWEHSTVDGVTRAFSGDGYER 760 (1089)
Q Consensus 682 ~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyva-d~~~~~I~~~~~~~g~~~~~~g~g~~~ 760 (1089)
..+|........+...-.-.. ...=+.-+|--+||+| +.|.. |+...- .+-+.+|.+..+...+...
T Consensus 84 ~nwd~~~~~a~v~~t~~ev~~---------d~kknR~NDgkvdP~G-ryy~GtMad~~~--~le~~~g~Ly~~~~~h~v~ 151 (310)
T KOG4499|consen 84 VNWDGVSESAKVYRTLFEVQP---------DRKKNRLNDGKVDPDG-RYYGGTMADFGD--DLEPIGGELYSWLAGHQVE 151 (310)
T ss_pred EEcccccceeeeeeeccccCc---------hHHhcccccCccCCCC-ceeeeeeccccc--cccccccEEEEeccCCCce
Confidence 233322222222211000000 0011234455678888 44653 333222 2223344444443222111
Q ss_pred cCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEE--cCCCCeEEEecCCCCCCCCccccCCCCCccccccccC
Q 001380 761 NLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALN--LKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQH 838 (1089)
Q Consensus 761 ~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~--~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~ 838 (1089)
. ....+.-|+||++|.+-+.+|+.|+.+..|..++ ..+|.+. +++.+|..-.. ...--+.
T Consensus 152 ~------i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~s--------nr~~i~dlrk~----~~~e~~~ 213 (310)
T KOG4499|consen 152 L------IWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLS--------NRKVIFDLRKS----QPFESLE 213 (310)
T ss_pred e------eehhccCCccccccccCcEEEEEccCceEEeeeecCCCccccc--------CcceeEEeccC----CCcCCCC
Confidence 1 1133456899999999999999999999995555 6655442 22233322111 0001235
Q ss_pred ceEEEEccCCcEEEEeCCCCEEEEEeCCCCeEEEE
Q 001380 839 PLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTL 873 (1089)
Q Consensus 839 P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~v~t~ 873 (1089)
|.|+++|.+|+||||-...++|.++||.+|.+..-
T Consensus 214 PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~e 248 (310)
T KOG4499|consen 214 PDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLE 248 (310)
T ss_pred CCcceEccCCcEEEEEecCcEEEEECCCCCcEEEE
Confidence 89999999999999999999999999988876443
No 306
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=98.34 E-value=4.6e-07 Score=91.40 Aligned_cols=106 Identities=8% Similarity=0.053 Sum_probs=91.9
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCcEEE
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIV 244 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~v~ 244 (1089)
...||+.++|++|.+. +.++|.|++.+..++.+++.++....+|+.+++.+.....+++ +.+.++.+|.+++++||
T Consensus 42 ~~RPgl~eFL~~l~~~-yei~I~Ts~~~~yA~~il~~ldp~~~~f~~~l~r~~~~~~~~~---~~K~L~~l~~~~~~vIi 117 (162)
T TIGR02251 42 FKRPHVDEFLERVSKW-YELVIFTASLEEYADPVLDILDRGGKVISRRLYRESCVFTNGK---YVKDLSLVGKDLSKVII 117 (162)
T ss_pred EECCCHHHHHHHHHhc-CEEEEEcCCcHHHHHHHHHHHCcCCCEEeEEEEccccEEeCCC---EEeEchhcCCChhhEEE
Confidence 5689999999999998 9999999999999999999999863489999999887766666 77888999999999999
Q ss_pred EcCChhhHHHHHHcCCeEEEEcCCCCHHHH
Q 001380 245 IEDALAGVQAAKAAQMRCIAVTTTLSEERL 274 (1089)
Q Consensus 245 VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l 274 (1089)
|||+..|+.++.++|+.+..+.......++
T Consensus 118 VDD~~~~~~~~~~NgI~i~~f~~~~~D~~L 147 (162)
T TIGR02251 118 IDNSPYSYSLQPDNAIPIKSWFGDPNDTEL 147 (162)
T ss_pred EeCChhhhccCccCEeecCCCCCCCCHHHH
Confidence 999999999999999887777654344444
No 307
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=98.32 E-value=2.7e-06 Score=75.16 Aligned_cols=69 Identities=20% Similarity=0.362 Sum_probs=57.3
Q ss_pred EEEEccC-CcEEEEeCC-----------------CCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccC
Q 001380 841 GVYCAKN-GQIYVADSY-----------------NHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQN 902 (1089)
Q Consensus 841 gva~~~~-G~lyVaD~~-----------------n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~ 902 (1089)
+++++++ |.||++|+. ++|+.++||.+++++.+.. .|..|+||+++++
T Consensus 2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~--------------~L~fpNGVals~d 67 (89)
T PF03088_consen 2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLD--------------GLYFPNGVALSPD 67 (89)
T ss_dssp EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEE--------------EESSEEEEEE-TT
T ss_pred ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehh--------------CCCccCeEEEcCC
Confidence 6889988 999999974 4799999999999999885 5889999999999
Q ss_pred Cc-EEEEECCCCEEEEEeCCCC
Q 001380 903 GN-LFIADTNNNIIRYLDLNKE 923 (1089)
Q Consensus 903 G~-lyVad~~n~~I~~~~~~~~ 923 (1089)
+. |+|+++..+||.++-+.|.
T Consensus 68 ~~~vlv~Et~~~Ri~rywl~Gp 89 (89)
T PF03088_consen 68 ESFVLVAETGRYRILRYWLKGP 89 (89)
T ss_dssp SSEEEEEEGGGTEEEEEESSST
T ss_pred CCEEEEEeccCceEEEEEEeCC
Confidence 86 9999999999999998763
No 308
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.32 E-value=0.00012 Score=87.06 Aligned_cols=200 Identities=16% Similarity=0.230 Sum_probs=124.3
Q ss_pred EEEeecCCeEEEE-e-CCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEEC--CCCEE
Q 001380 606 LAIDILNNRLFIS-D-SNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADT--ENHAL 681 (1089)
Q Consensus 606 vavd~~~g~L~vs-d-~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~--~n~~I 681 (1089)
.+++|++.+|+++ + .+..+|++++.++.....+... . + .-...+++|+|+.|+++.. ++..|
T Consensus 223 p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~-~-g------------~~~~~~wSPDG~~La~~~~~~g~~~I 288 (448)
T PRK04792 223 PAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSF-P-G------------INGAPRFSPDGKKLALVLSKDGQPEI 288 (448)
T ss_pred ceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCC-C-C------------CcCCeeECCCCCEEEEEEeCCCCeEE
Confidence 4677756666554 3 2345799998875433333221 1 0 1134688999997776532 34579
Q ss_pred EEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEEC--CCcEEEEEECCCCeEEEEeCCCcc
Q 001380 682 REIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMA--GQHQIWEHSTVDGVTRAFSGDGYE 759 (1089)
Q Consensus 682 ~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~--~~~~I~~~~~~~g~~~~~~g~g~~ 759 (1089)
+.+|++++.++.+.... ......+|+|+|..|+++.. +..+|+.+|..++..+.+.-.+
T Consensus 289 y~~dl~tg~~~~lt~~~-----------------~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g-- 349 (448)
T PRK04792 289 YVVDIATKALTRITRHR-----------------AIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEG-- 349 (448)
T ss_pred EEEECCCCCeEECccCC-----------------CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCC--
Confidence 99999988887765321 12345678999988877653 4568999999888776654211
Q ss_pred ccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCC--eEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCcccccccc
Q 001380 760 RNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESS--SIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQ 837 (1089)
Q Consensus 760 ~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~--~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~ 837 (1089)
....+.+++|||+.||++...++ .|..++++++....+..+. .+ .
T Consensus 350 -------------~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~~------------~d--------~ 396 (448)
T PRK04792 350 -------------EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTSTR------------LD--------E 396 (448)
T ss_pred -------------CCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccCCC------------CC--------C
Confidence 01224588999999988765443 6788898877665542210 00 1
Q ss_pred CceEEEEccCCc-EEEEeCC--CCEEEEEeCCCCeEEEEe
Q 001380 838 HPLGVYCAKNGQ-IYVADSY--NHKIKKLDPASNRVSTLA 874 (1089)
Q Consensus 838 ~P~gva~~~~G~-lyVaD~~--n~~I~~~d~~~~~v~t~~ 874 (1089)
.| .+++||+ |+++... ...|..++.+++....+.
T Consensus 397 ~p---s~spdG~~I~~~~~~~g~~~l~~~~~~G~~~~~l~ 433 (448)
T PRK04792 397 SP---SVAPNGTMVIYSTTYQGKQVLAAVSIDGRFKARLP 433 (448)
T ss_pred Cc---eECCCCCEEEEEEecCCceEEEEEECCCCceEECc
Confidence 23 5788885 4444332 234778888766666654
No 309
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.30 E-value=0.00038 Score=81.40 Aligned_cols=254 Identities=19% Similarity=0.212 Sum_probs=171.4
Q ss_pred CCCCCceEEEeecCCeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECC
Q 001380 599 PLKFPGKLAIDILNNRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTE 677 (1089)
Q Consensus 599 ~l~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~ 677 (1089)
.+..-..++++| +|.+.++....+.|.+||.. |--..++... . +...++.+...|+ ..++-.-
T Consensus 349 H~~~i~~l~YSp-Dgq~iaTG~eDgKVKvWn~~SgfC~vTFteH-t-------------s~Vt~v~f~~~g~-~llssSL 412 (893)
T KOG0291|consen 349 HSDRITSLAYSP-DGQLIATGAEDGKVKVWNTQSGFCFVTFTEH-T-------------SGVTAVQFTARGN-VLLSSSL 412 (893)
T ss_pred cccceeeEEECC-CCcEEEeccCCCcEEEEeccCceEEEEeccC-C-------------CceEEEEEEecCC-EEEEeec
Confidence 344455788887 89999999999999999976 5555566544 2 2458999999999 6677667
Q ss_pred CCEEEEEECCCC-eEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCC
Q 001380 678 NHALREIDFVND-TVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGD 756 (1089)
Q Consensus 678 n~~I~~~d~~~g-~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~ 756 (1089)
.++||.+|+... ..+|+..... -.-..||+||.|..+.......-.|+.|+.++|++..+. +
T Consensus 413 DGtVRAwDlkRYrNfRTft~P~p----------------~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiL-s 475 (893)
T KOG0291|consen 413 DGTVRAWDLKRYRNFRTFTSPEP----------------IQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDIL-S 475 (893)
T ss_pred CCeEEeeeecccceeeeecCCCc----------------eeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehh-c
Confidence 899999998763 3555542211 123469999999666555555668999999999876543 1
Q ss_pred CccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCC--CeEEEecCCCCCCCCccccCCCCCccccc
Q 001380 757 GYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTG--GSRLLAGGDPIFPDNLFKFGDRDGMGSEV 834 (1089)
Q Consensus 757 g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~--~~~~~~g~~~~~~~~l~~~g~~dg~~~~~ 834 (1089)
|.|+ --++|+++++| .+.++-+...+||+++.-.. .+.++.-
T Consensus 476 GHEg-------------PVs~l~f~~~~-~~LaS~SWDkTVRiW~if~s~~~vEtl~i---------------------- 519 (893)
T KOG0291|consen 476 GHEG-------------PVSGLSFSPDG-SLLASGSWDKTVRIWDIFSSSGTVETLEI---------------------- 519 (893)
T ss_pred CCCC-------------cceeeEEcccc-CeEEeccccceEEEEEeeccCceeeeEee----------------------
Confidence 2111 13689999999 67788888899998875432 3333321
Q ss_pred cccCceEEEEccCCc-EEEEeCCCCEEEEEeCCCC-eEEEEeccCC--C--CCCCCc-c-cccccCCCceEEEccCCcEE
Q 001380 835 LLQHPLGVYCAKNGQ-IYVADSYNHKIKKLDPASN-RVSTLAGIGK--A--GFKDGA-A-LAAQLSEPAGIIEAQNGNLF 906 (1089)
Q Consensus 835 ~l~~P~gva~~~~G~-lyVaD~~n~~I~~~d~~~~-~v~t~~g~g~--~--g~~~g~-~-~~~~l~~P~gi~vd~~G~ly 906 (1089)
-...+++++.|+|. |.|+- -++.|.-+|...+ ++.++.|.-. . ...+-. + ..++-..=+.||+..||...
T Consensus 520 -~sdvl~vsfrPdG~elaVaT-ldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~I 597 (893)
T KOG0291|consen 520 -RSDVLAVSFRPDGKELAVAT-LDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCI 597 (893)
T ss_pred -ccceeEEEEcCCCCeEEEEE-ecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEE
Confidence 11357899999995 77764 5688999987533 3334433211 0 111111 1 12233445679999999999
Q ss_pred EEECCCCEEEEEeCCCC
Q 001380 907 IADTNNNIIRYLDLNKE 923 (1089)
Q Consensus 907 Vad~~n~~I~~~~~~~~ 923 (1089)
+|...++.|-.++...+
T Consensus 598 lAgG~sn~iCiY~v~~~ 614 (893)
T KOG0291|consen 598 LAGGESNSICIYDVPEG 614 (893)
T ss_pred EecCCcccEEEEECchh
Confidence 99988899999998876
No 310
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.29 E-value=0.00018 Score=85.47 Aligned_cols=201 Identities=16% Similarity=0.165 Sum_probs=126.0
Q ss_pred eEEEeecCCeEEEE-eC-CCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEEC--CCCE
Q 001380 605 KLAIDILNNRLFIS-DS-NHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADT--ENHA 680 (1089)
Q Consensus 605 ~vavd~~~g~L~vs-d~-~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~--~n~~ 680 (1089)
.++++|++.+|+.+ +. +...|++++.++.....+... . + .-...+++|+|+.|+++-. ++..
T Consensus 206 ~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~-~-g------------~~~~~~~SPDG~~la~~~~~~g~~~ 271 (435)
T PRK05137 206 TPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNF-P-G------------MTFAPRFSPDGRKVVMSLSQGGNTD 271 (435)
T ss_pred eeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecC-C-C------------cccCcEECCCCCEEEEEEecCCCce
Confidence 35667755555544 32 456899998875444444322 1 0 1245678999987765532 3467
Q ss_pred EEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEEC--CCcEEEEEECCCCeEEEEeCCCc
Q 001380 681 LREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMA--GQHQIWEHSTVDGVTRAFSGDGY 758 (1089)
Q Consensus 681 I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~--~~~~I~~~~~~~g~~~~~~g~g~ 758 (1089)
|+.+|++++.++.+..... .....+++|+|..|+++.. +..+|+.+|..++..+.+...+
T Consensus 272 Iy~~d~~~~~~~~Lt~~~~-----------------~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~- 333 (435)
T PRK05137 272 IYTMDLRSGTTTRLTDSPA-----------------IDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGG- 333 (435)
T ss_pred EEEEECCCCceEEccCCCC-----------------ccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCC-
Confidence 9999999988877753110 1234688999988877653 3458999999888777664211
Q ss_pred cccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCC--CeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccc
Q 001380 759 ERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSES--SSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLL 836 (1089)
Q Consensus 759 ~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~--~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l 836 (1089)
. .-...+++|+|+.|+++.... ..|..++++++..+.+..+ .
T Consensus 334 -----------~---~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~------------~---------- 377 (435)
T PRK05137 334 -----------G---RYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTSG------------F---------- 377 (435)
T ss_pred -----------C---cccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEeccCC------------C----------
Confidence 0 112457899998888776433 4788888876655444211 0
Q ss_pred cCceEEEEccCCc-EEE-EeCCC----CEEEEEeCCCCeEEEEe
Q 001380 837 QHPLGVYCAKNGQ-IYV-ADSYN----HKIKKLDPASNRVSTLA 874 (1089)
Q Consensus 837 ~~P~gva~~~~G~-lyV-aD~~n----~~I~~~d~~~~~v~t~~ 874 (1089)
......+++||+ ||+ ++... .+|.++|.+++....+.
T Consensus 378 -~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~ 420 (435)
T PRK05137 378 -LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREVP 420 (435)
T ss_pred -CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEEcc
Confidence 123357889985 444 43332 47999999888777664
No 311
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=98.29 E-value=0.00022 Score=75.92 Aligned_cols=208 Identities=16% Similarity=0.141 Sum_probs=128.1
Q ss_pred CcceeEEeeCCCEEEEEECCC--CEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEEC
Q 001380 658 RPQGLAYNAKKNLLYVADTEN--HALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMA 735 (1089)
Q Consensus 658 ~P~gla~d~~g~~lyVaD~~n--~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~ 735 (1089)
.-||+.+..+|. ||.+.... ..|+++|+++|++......... ..--||++. ++.||.-.+
T Consensus 46 FTQGL~~~~~g~-LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~---------------~FgEGit~~--~d~l~qLTW 107 (264)
T PF05096_consen 46 FTQGLEFLDDGT-LYESTGLYGQSSLRKVDLETGKVLQSVPLPPR---------------YFGEGITIL--GDKLYQLTW 107 (264)
T ss_dssp EEEEEEEEETTE-EEEEECSTTEEEEEEEETTTSSEEEEEE-TTT-----------------EEEEEEE--TTEEEEEES
T ss_pred cCccEEecCCCE-EEEeCCCCCcEEEEEEECCCCcEEEEEECCcc---------------ccceeEEEE--CCEEEEEEe
Confidence 349999976665 99997754 4999999999877654322211 134678887 579999999
Q ss_pred CCcEEEEEECCCCe-EEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeE-EEecC
Q 001380 736 GQHQIWEHSTVDGV-TRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSR-LLAGG 813 (1089)
Q Consensus 736 ~~~~I~~~~~~~g~-~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~-~~~g~ 813 (1089)
.++..++||..+-+ +..|.-. ....||+-+ |+.||++| ++++|+.+++.+-... .+.-.
T Consensus 108 k~~~~f~yd~~tl~~~~~~~y~----------------~EGWGLt~d--g~~Li~SD-GS~~L~~~dP~~f~~~~~i~V~ 168 (264)
T PF05096_consen 108 KEGTGFVYDPNTLKKIGTFPYP----------------GEGWGLTSD--GKRLIMSD-GSSRLYFLDPETFKEVRTIQVT 168 (264)
T ss_dssp SSSEEEEEETTTTEEEEEEE-S----------------SS--EEEEC--SSCEEEE--SSSEEEEE-TTT-SEEEEEE-E
T ss_pred cCCeEEEEccccceEEEEEecC----------------CcceEEEcC--CCEEEEEC-CccceEEECCcccceEEEEEEE
Confidence 99999999998653 3344311 145799955 55899999 5899999999854332 11100
Q ss_pred CCCCCCCccccCCCCCccccccccCceEEEEccCCcEEEEeCCCCEEEEEeCCCCeEEEEeccCCC-C--CCCCcccccc
Q 001380 814 DPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKA-G--FKDGAALAAQ 890 (1089)
Q Consensus 814 ~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~-g--~~~g~~~~~~ 890 (1089)
+ +|. . +..-.-+-+- +|.||..-+...+|.+|||.+|.|..+.....- . ..+. .....
T Consensus 169 ~-------------~g~-p---v~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~-~~~~~ 229 (264)
T PF05096_consen 169 D-------------NGR-P---VSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDK-SRQPD 229 (264)
T ss_dssp E-------------TTE-E------EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTT-ST--T
T ss_pred E-------------CCE-E---CCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccc-ccccc
Confidence 0 010 0 1112223332 799999999999999999999999887632110 0 0000 00112
Q ss_pred cCCCceEEEccC-CcEEEEECCCCEEEEEeCC
Q 001380 891 LSEPAGIIEAQN-GNLFIADTNNNIIRYLDLN 921 (1089)
Q Consensus 891 l~~P~gi~vd~~-G~lyVad~~n~~I~~~~~~ 921 (1089)
-+--+|||.|++ +++||+.-.=..+..+.+.
T Consensus 230 ~dVLNGIAyd~~~~~l~vTGK~Wp~lyeV~l~ 261 (264)
T PF05096_consen 230 DDVLNGIAYDPETDRLFVTGKLWPKLYEVKLV 261 (264)
T ss_dssp TS-EEEEEEETTTTEEEEEETT-SEEEEEEEE
T ss_pred CCeeEeEeEeCCCCEEEEEeCCCCceEEEEEE
Confidence 345789999975 4799998766667666553
No 312
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.29 E-value=0.00021 Score=84.40 Aligned_cols=280 Identities=11% Similarity=0.067 Sum_probs=151.8
Q ss_pred EEEEeCCCCEEEEEe-CCCCEEEEEecCC---CCCCC----------C----CCCCccccCCcceeEEe--eCCCEEEEE
Q 001380 615 LFISDSNHNRIVVTD-LDGNFIVQIGSSG---EEGLR----------D----GSFDDATFNRPQGLAYN--AKKNLLYVA 674 (1089)
Q Consensus 615 L~vsd~~~~~I~~~~-~~g~~~~~i~~~g---~~g~~----------d----G~~~~~~f~~P~gla~d--~~g~~lyVa 674 (1089)
.|+|...++.+.++- ++++.+.+|+-.. ..|+. . |.+..+-..+|+-=--+ .+|++||+-
T Consensus 68 ~f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~~~gD~HHp~~s~t~g~ydGr~~fin 147 (635)
T PRK02888 68 GFWSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVLGEGARGGKYLNGDTHHPHMSFTDGTYDGRYLFIN 147 (635)
T ss_pred EEeeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHhhccccCCcccCCCcCCCcccccCCccceeEEEEe
Confidence 445555567777774 4677666655431 11220 0 11222233344321111 268999999
Q ss_pred ECCCCEEEEEECCCCeEEEEecC----CCCCCCCCCCCcccccc-cCCceeEEEecCCCEEEEEECCCcEEEEEECCCCe
Q 001380 675 DTENHALREIDFVNDTVRTLAGN----GTKGSDYQGGEKGTSQL-LNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGV 749 (1089)
Q Consensus 675 D~~n~~I~~~d~~~g~v~~~ag~----g~~~~~~~~~~~~~~~~-l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~ 749 (1089)
|..|.||-+|+++.-+...+... +..|..+.- .+-++.- .+.=..+=++++|..++.+....+.+..+|.++..
T Consensus 148 dk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~-~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvID~etme 226 (635)
T PRK02888 148 DKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQK-IPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAVDAETME 226 (635)
T ss_pred cCCCcceEEEECccEeeceeEeCCCccCccccCccc-cCCccEEEeCcccccccCCCCCEeecccceeEEEEEEECccce
Confidence 99999999999976443333321 111111000 0001000 01112233566777787777777788888887654
Q ss_pred EEE-EeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeC---CCCeEEEEEcCCCCeEEEecC---CCCCCCCcc
Q 001380 750 TRA-FSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADS---ESSSIRALNLKTGGSRLLAGG---DPIFPDNLF 822 (1089)
Q Consensus 750 ~~~-~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~---~~~~I~~~~~~~~~~~~~~g~---~~~~~~~l~ 822 (1089)
+.. +.-. .+|.+++++++|+++|++.. ....+..++...........- .....++-+
T Consensus 227 V~~qV~Vd----------------gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~ 290 (635)
T PRK02888 227 VAWQVMVD----------------GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKF 290 (635)
T ss_pred EEEEEEeC----------------CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCE
Confidence 422 2111 16889999999999999962 223343433222111110000 000000000
Q ss_pred cc-CC-----CCCcc-------c---cccccCceEEEEccCC-cEEEEeCCCCEEEEEeCCCCeE---------EEEecc
Q 001380 823 KF-GD-----RDGMG-------S---EVLLQHPLGVYCAKNG-QIYVADSYNHKIKKLDPASNRV---------STLAGI 876 (1089)
Q Consensus 823 ~~-g~-----~dg~~-------~---~~~l~~P~gva~~~~G-~lyVaD~~n~~I~~~d~~~~~v---------~t~~g~ 876 (1089)
.+ ++ .|+.. . -.-=..|+||+++||| .+||+.-..+.|.+||.+.... .++.+.
T Consensus 291 ~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvae 370 (635)
T PRK02888 291 KTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAE 370 (635)
T ss_pred EEECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEe
Confidence 00 00 01110 0 0111479999999999 5999999899999999865331 122221
Q ss_pred CCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEEEEeCCC
Q 001380 877 GKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLDLNK 922 (1089)
Q Consensus 877 g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~~~~~ 922 (1089)
-.- =..|...++|++|+.|++=.-.+.|.++++..
T Consensus 371 vev-----------GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 371 PEL-----------GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ecc-----------CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 110 13499999999999999988889999999876
No 313
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.28 E-value=3.3e-06 Score=75.65 Aligned_cols=71 Identities=21% Similarity=0.321 Sum_probs=56.7
Q ss_pred cccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHH
Q 001380 449 RDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLW 528 (1089)
Q Consensus 449 ~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~ 528 (1089)
.++++.+.+..|+++||++|....+.++++.+++.+ +.+.-+.. |...+++
T Consensus 8 ~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~--i~~~~vd~---------------------------~~~~e~a 58 (89)
T cd03026 8 RRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNPN--IEHEMIDG---------------------------ALFQDEV 58 (89)
T ss_pred HhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCC--ceEEEEEh---------------------------HhCHHHH
Confidence 467888889999999999999999999999988764 44444422 4556899
Q ss_pred HHhCCCceeEEEEECCCCcEEEE
Q 001380 529 RELGVNSWPTFAVVGPNGKLLAQ 551 (1089)
Q Consensus 529 ~~~~v~~~Pt~~lid~~G~i~~~ 551 (1089)
+.|+|.++|++++ +|+++..
T Consensus 59 ~~~~V~~vPt~vi---dG~~~~~ 78 (89)
T cd03026 59 EERGIMSVPAIFL---NGELFGF 78 (89)
T ss_pred HHcCCccCCEEEE---CCEEEEe
Confidence 9999999999974 6877664
No 314
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.28 E-value=0.0025 Score=75.24 Aligned_cols=220 Identities=15% Similarity=0.146 Sum_probs=124.9
Q ss_pred CEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCC---EEEEEECC-CCEEEEEECCCCeEEEEecCC
Q 001380 623 NRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKN---LLYVADTE-NHALREIDFVNDTVRTLAGNG 698 (1089)
Q Consensus 623 ~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~---~lyVaD~~-n~~I~~~d~~~g~v~~~ag~g 698 (1089)
.+|.+.|.+|...+.+-..... -..| +++|+|+ ++|++... ...|+..++++|..+.+....
T Consensus 165 ~~l~~~d~dG~~~~~lt~~~~~-----------~~sP---~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~ 230 (428)
T PRK01029 165 GELWSVDYDGQNLRPLTQEHSL-----------SITP---TWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQ 230 (428)
T ss_pred ceEEEEcCCCCCceEcccCCCC-----------cccc---eEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCC
Confidence 4677777777655544332110 1133 7888886 35677654 458999999988877775311
Q ss_pred CCCCCCCCCCcccccccCCceeEEEecCCCEEEEEEC--CCcEEEE--EECCC---CeEEEEeCCCccccCCCCCCCCcc
Q 001380 699 TKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMA--GQHQIWE--HSTVD---GVTRAFSGDGYERNLNGSSSLNTS 771 (1089)
Q Consensus 699 ~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~--~~~~I~~--~~~~~---g~~~~~~g~g~~~~~~g~~~~~~~ 771 (1089)
+ .....+|+|+|+.|.++.. ++..++. ++..+ +..+.+... .
T Consensus 231 --g---------------~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~--------------~ 279 (428)
T PRK01029 231 --G---------------NQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNE--------------A 279 (428)
T ss_pred --C---------------CccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecC--------------C
Confidence 1 1234689999988887763 3445554 34433 222222210 0
Q ss_pred ccCCceEEEcCCCCEEEEEeC--CCCeEEEEEcCC--CCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccC
Q 001380 772 FAQPSGISLSPDFMEIYVADS--ESSSIRALNLKT--GGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKN 847 (1089)
Q Consensus 772 ~~~P~glav~~~g~~lyvad~--~~~~I~~~~~~~--~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~ 847 (1089)
.......+++|||+.|+++.. +...|+.++.++ +..+.+.... ......+++||
T Consensus 280 ~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~----------------------~~~~~p~wSPD 337 (428)
T PRK01029 280 FGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKY----------------------RNSSCPAWSPD 337 (428)
T ss_pred CCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCC----------------------CCccceeECCC
Confidence 112235689999986665542 234677776642 2222221110 01234578899
Q ss_pred Cc-EEEE-eC-CCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCc-EEEEEC--CCCEEEEEeCC
Q 001380 848 GQ-IYVA-DS-YNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGN-LFIADT--NNNIIRYLDLN 921 (1089)
Q Consensus 848 G~-lyVa-D~-~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~-lyVad~--~n~~I~~~~~~ 921 (1089)
|+ |+++ +. +...|.++|.+++....+.... .........++|+ |+++.. +...|..++++
T Consensus 338 G~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~--------------~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~ 403 (428)
T PRK01029 338 GKKIAFCSVIKGVRQICVYDLATGRDYQLTTSP--------------ENKESPSWAIDSLHLVYSAGNSNESELYLISLI 403 (428)
T ss_pred CCEEEEEEcCCCCcEEEEEECCCCCeEEccCCC--------------CCccceEECCCCCEEEEEECCCCCceEEEEECC
Confidence 95 4443 32 3468999999999888775320 1123456677775 544432 34678888888
Q ss_pred CC
Q 001380 922 KE 923 (1089)
Q Consensus 922 ~~ 923 (1089)
++
T Consensus 404 ~g 405 (428)
T PRK01029 404 TK 405 (428)
T ss_pred CC
Confidence 76
No 315
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=1.7e-06 Score=99.25 Aligned_cols=87 Identities=18% Similarity=0.411 Sum_probs=74.1
Q ss_pred CCEEEEEEecCCCcchhhhhhhHHHHHHHcCCC--CEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHH
Q 001380 453 GKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDM--PFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRE 530 (1089)
Q Consensus 453 gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~--~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~ 530 (1089)
...+||.|||+||++|+...|++.+.+..++.. .+.+.-|.. ..+..++.+
T Consensus 42 ~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDa---------------------------t~~~~~~~~ 94 (493)
T KOG0190|consen 42 HEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDA---------------------------TEESDLASK 94 (493)
T ss_pred CceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeec---------------------------chhhhhHhh
Confidence 468899999999999999999999999998865 566666632 345789999
Q ss_pred hCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHH
Q 001380 531 LGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEA 567 (1089)
Q Consensus 531 ~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~ 567 (1089)
|+|+++||+-++ ++|+....|.|....+.+..+++.
T Consensus 95 y~v~gyPTlkiF-rnG~~~~~Y~G~r~adgIv~wl~k 130 (493)
T KOG0190|consen 95 YEVRGYPTLKIF-RNGRSAQDYNGPREADGIVKWLKK 130 (493)
T ss_pred hcCCCCCeEEEE-ecCCcceeccCcccHHHHHHHHHh
Confidence 999999999999 999987779999888888888754
No 316
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=98.25 E-value=3.1e-06 Score=77.91 Aligned_cols=82 Identities=23% Similarity=0.369 Sum_probs=72.1
Q ss_pred cCCCCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCC--hhcHHHHHHHHHH-c
Q 001380 437 LDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDN--EKDLEAIRNAVLR-Y 513 (1089)
Q Consensus 437 ~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~--~~~~~~~~~~~~~-~ 513 (1089)
..+++|+.++| +.++||++||.--|+-|+.-. ....|++|+++|+++|+.|+++-+..|.. ..+.++++.++.. +
T Consensus 6 ~~~~~G~~v~l-~~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnqFg~QEp~~~~ei~~~~~~~~ 83 (108)
T PF00255_consen 6 AKDIDGKPVSL-SKYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQFGNQEPGSNEEIKEFCKEKF 83 (108)
T ss_dssp EEBTTSSEEEG-GGGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBSTTTTTTSSCHHHHHHHHCHCH
T ss_pred eeCCCCCEECH-HHcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHHhccccCCCHHHHHHHHHhcc
Confidence 34679999999 999999999999999999988 88999999999999999999999998854 3577889998888 7
Q ss_pred CCcccee
Q 001380 514 GISHPVV 520 (1089)
Q Consensus 514 ~~~~~v~ 520 (1089)
+.+||+.
T Consensus 84 ~~~F~vf 90 (108)
T PF00255_consen 84 GVTFPVF 90 (108)
T ss_dssp T-SSEEB
T ss_pred CCcccce
Confidence 8888875
No 317
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.24 E-value=0.00021 Score=84.83 Aligned_cols=200 Identities=18% Similarity=0.195 Sum_probs=125.8
Q ss_pred EEEeecCCeEEEEeC--CCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEE-EC-CCCEE
Q 001380 606 LAIDILNNRLFISDS--NHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVA-DT-ENHAL 681 (1089)
Q Consensus 606 vavd~~~g~L~vsd~--~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVa-D~-~n~~I 681 (1089)
++++|++..|+++.. +++.|++++.++.....+... .+ ....++++|+|+.|+++ +. ++..|
T Consensus 209 p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~--~g------------~~~~~~~SpDG~~l~~~~s~~g~~~I 274 (433)
T PRK04922 209 PAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASF--RG------------INGAPSFSPDGRRLALTLSRDGNPEI 274 (433)
T ss_pred ccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccC--CC------------CccCceECCCCCEEEEEEeCCCCceE
Confidence 466665556665542 345799998875444443321 11 11356899999877654 32 45689
Q ss_pred EEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEEC--CCcEEEEEECCCCeEEEEeCCCcc
Q 001380 682 REIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMA--GQHQIWEHSTVDGVTRAFSGDGYE 759 (1089)
Q Consensus 682 ~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~--~~~~I~~~~~~~g~~~~~~g~g~~ 759 (1089)
+.+|+.++.++.+..... .....+|+|+|..|+++.. +..+|+.++..++..+.+...+
T Consensus 275 y~~d~~~g~~~~lt~~~~-----------------~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g-- 335 (433)
T PRK04922 275 YVMDLGSRQLTRLTNHFG-----------------IDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQG-- 335 (433)
T ss_pred EEEECCCCCeEECccCCC-----------------CccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCC--
Confidence 999999988777653210 1234689999987877643 3457999998887766654211
Q ss_pred ccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCC--CeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCcccccccc
Q 001380 760 RNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSES--SSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQ 837 (1089)
Q Consensus 760 ~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~--~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~ 837 (1089)
.....++++|+|+.|+++...+ ..|+.+++.++..+.+..+. .
T Consensus 336 -------------~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~~------------~---------- 380 (433)
T PRK04922 336 -------------NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTPGS------------L---------- 380 (433)
T ss_pred -------------CCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECCCCC------------C----------
Confidence 1123578999999998876543 36889998877665442210 0
Q ss_pred CceEEEEccCCc-EEE-EeC-CCCEEEEEeCCCCeEEEEe
Q 001380 838 HPLGVYCAKNGQ-IYV-ADS-YNHKIKKLDPASNRVSTLA 874 (1089)
Q Consensus 838 ~P~gva~~~~G~-lyV-aD~-~n~~I~~~d~~~~~v~t~~ 874 (1089)
-....+++||+ +++ ++. +..+|..++.+++....+.
T Consensus 381 -~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~~~l~ 419 (433)
T PRK04922 381 -DESPSFAPNGSMVLYATREGGRGVLAAVSTDGRVRQRLV 419 (433)
T ss_pred -CCCceECCCCCEEEEEEecCCceEEEEEECCCCceEEcc
Confidence 11246888986 444 433 3457889998877666654
No 318
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.23 E-value=3.4e-06 Score=71.42 Aligned_cols=63 Identities=19% Similarity=0.211 Sum_probs=47.8
Q ss_pred EEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHhCCCc
Q 001380 456 VVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRELGVNS 535 (1089)
Q Consensus 456 vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~~v~~ 535 (1089)
-+..|+++||++|....+.|+++.+++. ++.+.-+.. |.+.++++.||+.+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~--~i~~~~id~---------------------------~~~~~l~~~~~i~~ 52 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNP--NISAEMIDA---------------------------AEFPDLADEYGVMS 52 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCC--ceEEEEEEc---------------------------ccCHhHHHHcCCcc
Confidence 3678999999999999999999987654 366665532 34456889999999
Q ss_pred eeEEEEECCCCcEEE
Q 001380 536 WPTFAVVGPNGKLLA 550 (1089)
Q Consensus 536 ~Pt~~lid~~G~i~~ 550 (1089)
+|++++ +|++++
T Consensus 53 vPti~i---~~~~~~ 64 (67)
T cd02973 53 VPAIVI---NGKVEF 64 (67)
T ss_pred cCEEEE---CCEEEE
Confidence 999765 455554
No 319
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=98.22 E-value=1.4e-05 Score=78.01 Aligned_cols=88 Identities=20% Similarity=0.137 Sum_probs=66.7
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCcc--E---------------EEEcC--CccCCCCCH
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFD--A---------------IVSAD--AFENLKPAP 225 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd--~---------------i~~~~--~~~~~KP~~ 225 (1089)
.+-||.++++++++++++++.|+|++-...++.+++.++-. +-++ . ++..+ ..++.||
T Consensus 73 ~Idp~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~ivgk-e~i~~idi~sn~~~ih~dg~h~i~~~~ds~fG~dK~-- 149 (220)
T COG4359 73 KIDPGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIVGK-ERIYCIDIVSNNDYIHIDGQHSIKYTDDSQFGHDKS-- 149 (220)
T ss_pred ccCccHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhccc-cceeeeEEeecCceEcCCCceeeecCCccccCCCcc--
Confidence 68899999999999999999999999999999999988632 2111 1 11111 1233444
Q ss_pred HHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcC
Q 001380 226 DIFLSASKILNVPTSECIVIEDALAGVQAAKAAQ 259 (1089)
Q Consensus 226 ~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG 259 (1089)
..++.+.-+++.++|+||+.+|+.+|+...
T Consensus 150 ----~vI~~l~e~~e~~fy~GDsvsDlsaaklsD 179 (220)
T COG4359 150 ----SVIHELSEPNESIFYCGDSVSDLSAAKLSD 179 (220)
T ss_pred ----hhHHHhhcCCceEEEecCCcccccHhhhhh
Confidence 245566667788999999999999999876
No 320
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=98.21 E-value=9.5e-06 Score=71.69 Aligned_cols=71 Identities=21% Similarity=0.215 Sum_probs=57.6
Q ss_pred eeEEEecCCCEEEEEECC-----------------CcEEEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCceEEEc
Q 001380 719 WDVCYKPINEKVYIAMAG-----------------QHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLS 781 (1089)
Q Consensus 719 ~~la~~~~g~~lyvad~~-----------------~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~ 781 (1089)
.||+++++++.||++|+. ++++++||+.+++++.+. .++..|+||+++
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~---------------~~L~fpNGVals 65 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLL---------------DGLYFPNGVALS 65 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEE---------------EEESSEEEEEE-
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEeh---------------hCCCccCeEEEc
Confidence 378999986799999964 368999999999998887 457789999999
Q ss_pred CCCCEEEEEeCCCCeEEEEEcCC
Q 001380 782 PDFMEIYVADSESSSIRALNLKT 804 (1089)
Q Consensus 782 ~~g~~lyvad~~~~~I~~~~~~~ 804 (1089)
+|+..|+|++....+|.++-++|
T Consensus 66 ~d~~~vlv~Et~~~Ri~rywl~G 88 (89)
T PF03088_consen 66 PDESFVLVAETGRYRILRYWLKG 88 (89)
T ss_dssp TTSSEEEEEEGGGTEEEEEESSS
T ss_pred CCCCEEEEEeccCceEEEEEEeC
Confidence 99999999999999999998763
No 321
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.20 E-value=4.4e-06 Score=88.81 Aligned_cols=85 Identities=14% Similarity=0.127 Sum_probs=63.8
Q ss_pred ccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHH
Q 001380 450 DLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWR 529 (1089)
Q Consensus 450 ~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~ 529 (1089)
.+++.++++.||++||++|+...+.++++..++. .+.+.-|.. |...++++
T Consensus 130 ~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~--~i~~~~vD~---------------------------~~~~~~~~ 180 (215)
T TIGR02187 130 SLDEPVRIEVFVTPTCPYCPYAVLMAHKFALAND--KILGEMIEA---------------------------NENPDLAE 180 (215)
T ss_pred hcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhcC--ceEEEEEeC---------------------------CCCHHHHH
Confidence 3455566777999999999999999999888753 355555522 45678999
Q ss_pred HhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHH
Q 001380 530 ELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEA 567 (1089)
Q Consensus 530 ~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~ 567 (1089)
.|+|.++|++++. .+|+. +.|....+++.++|..
T Consensus 181 ~~~V~~vPtl~i~-~~~~~---~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 181 KYGVMSVPKIVIN-KGVEE---FVGAYPEEQFLEYILS 214 (215)
T ss_pred HhCCccCCEEEEe-cCCEE---EECCCCHHHHHHHHHh
Confidence 9999999998876 56653 7787777777776653
No 322
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=98.19 E-value=0.001 Score=74.91 Aligned_cols=258 Identities=17% Similarity=0.249 Sum_probs=160.7
Q ss_pred CCCCCceEEEeecCCeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECC
Q 001380 599 PLKFPGKLAIDILNNRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTE 677 (1089)
Q Consensus 599 ~l~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~ 677 (1089)
.-+|...+-++| +|.+|++-...++|+.+|-. |+.+..++.. ++.--.-.+|+++||+..+ ++-..
T Consensus 189 HskFV~~VRysP-DG~~Fat~gsDgki~iyDGktge~vg~l~~~-----------~aHkGsIfalsWsPDs~~~-~T~Sa 255 (603)
T KOG0318|consen 189 HSKFVNCVRYSP-DGSRFATAGSDGKIYIYDGKTGEKVGELEDS-----------DAHKGSIFALSWSPDSTQF-LTVSA 255 (603)
T ss_pred cccceeeEEECC-CCCeEEEecCCccEEEEcCCCccEEEEecCC-----------CCccccEEEEEECCCCceE-EEecC
Confidence 345788888998 79999999999999999864 8888777642 1112245788999998854 44344
Q ss_pred CCEEEEEECCCCe-EEEEecCCCCCCCC-----------------------CCCCc----ccccccCCceeEEEecCCCE
Q 001380 678 NHALREIDFVNDT-VRTLAGNGTKGSDY-----------------------QGGEK----GTSQLLNSPWDVCYKPINEK 729 (1089)
Q Consensus 678 n~~I~~~d~~~g~-v~~~ag~g~~~~~~-----------------------~~~~~----~~~~~l~~P~~la~~~~g~~ 729 (1089)
...++.+|..+.. ++++. .|.+-.+. +.+.+ ....+..+-..+++++++.+
T Consensus 256 Dkt~KIWdVs~~slv~t~~-~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~ 334 (603)
T KOG0318|consen 256 DKTIKIWDVSTNSLVSTWP-MGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKT 334 (603)
T ss_pred CceEEEEEeeccceEEEee-cCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCE
Confidence 5566666655443 33332 22210000 00000 00112234567888888866
Q ss_pred EEEEECCCcEEEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEE
Q 001380 730 VYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRL 809 (1089)
Q Consensus 730 lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~ 809 (1089)
||-++ ..+.|-.|+...|..-.+.|.+ .-.+-.+++.+..+ .+|.+. ..+++++++..++...-
T Consensus 335 i~Sgs-yDG~I~~W~~~~g~~~~~~g~~-------------h~nqI~~~~~~~~~-~~~t~g-~Dd~l~~~~~~~~~~t~ 398 (603)
T KOG0318|consen 335 IYSGS-YDGHINSWDSGSGTSDRLAGKG-------------HTNQIKGMAASESG-ELFTIG-WDDTLRVISLKDNGYTK 398 (603)
T ss_pred EEeec-cCceEEEEecCCcccccccccc-------------ccceEEEEeecCCC-cEEEEe-cCCeEEEEecccCcccc
Confidence 66555 4577778887766666665543 23467788888755 666554 45788888876443210
Q ss_pred EecCCCCCCCCccccCCCCCccccccccCceEEEEccCCcEEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCccccc
Q 001380 810 LAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAA 889 (1089)
Q Consensus 810 ~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~ 889 (1089)
.+.+.+| ..|.|+++.++|.+.|.-.+.+ |..+.- .+.++++.
T Consensus 399 ---------~~~~~lg-----------~QP~~lav~~d~~~avv~~~~~-iv~l~~-~~~~~~~~--------------- 441 (603)
T KOG0318|consen 399 ---------SEVVKLG-----------SQPKGLAVLSDGGTAVVACISD-IVLLQD-QTKVSSIP--------------- 441 (603)
T ss_pred ---------cceeecC-----------CCceeEEEcCCCCEEEEEecCc-EEEEec-CCcceeec---------------
Confidence 0111222 3599999999986665555544 444432 23444443
Q ss_pred ccCCCceEEEccCCcEEEEECCCCEEEEEeCCCC
Q 001380 890 QLSEPAGIIEAQNGNLFIADTNNNIIRYLDLNKE 923 (1089)
Q Consensus 890 ~l~~P~gi~vd~~G~lyVad~~n~~I~~~~~~~~ 923 (1089)
.-.+|.++|+.++++........+.|+++.+++.
T Consensus 442 ~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~ 475 (603)
T KOG0318|consen 442 IGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGD 475 (603)
T ss_pred cccccceEEEcCCCCEEEEecccceEEEEEecCC
Confidence 1245889999999988888888888999999986
No 323
>PLN02887 hydrolase family protein
Probab=98.19 E-value=1.6e-05 Score=95.52 Aligned_cols=72 Identities=15% Similarity=0.124 Sum_probs=59.1
Q ss_pred CCCCHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccCCHHHHHh
Q 001380 221 LKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDILT 296 (1089)
Q Consensus 221 ~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~i~~ll~ 296 (1089)
+-.|...++.+++++|++++++++|||+.||++|.+.+| ++|..++..+++++ .+++|..+-.+=.+...|.
T Consensus 505 gvSKG~ALk~L~e~lGI~~eeviAFGDs~NDIeMLe~AG---~gVAMgNA~eeVK~-~Ad~VT~sNdEDGVA~aLe 576 (580)
T PLN02887 505 GTSKGNGVKMLLNHLGVSPDEIMAIGDGENDIEMLQLAS---LGVALSNGAEKTKA-VADVIGVSNDEDGVADAIY 576 (580)
T ss_pred CCCHHHHHHHHHHHcCCCHHHEEEEecchhhHHHHHHCC---CEEEeCCCCHHHHH-hCCEEeCCCCcCHHHHHHH
Confidence 456778899999999999999999999999999999999 45666666677766 5899988877766666654
No 324
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=98.19 E-value=0.002 Score=67.79 Aligned_cols=259 Identities=17% Similarity=0.198 Sum_probs=161.7
Q ss_pred CCCCCCCCCCceEEEeecCCeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEE
Q 001380 594 RLFTSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLY 672 (1089)
Q Consensus 594 ~~~~~~l~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~ly 672 (1089)
+...+.+..-..+-+.+ +.+..|+-+..+++.++|.- ++.+..|..+ . .+..-.|+.|.|+ |
T Consensus 49 r~LkGH~~Ki~~~~ws~-Dsr~ivSaSqDGklIvWDs~TtnK~haipl~-s-------------~WVMtCA~sPSg~--~ 111 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWST-DSRRIVSASQDGKLIVWDSFTTNKVHAIPLP-S-------------SWVMTCAYSPSGN--F 111 (343)
T ss_pred EEecccccceeeeEecC-CcCeEEeeccCCeEEEEEcccccceeEEecC-c-------------eeEEEEEECCCCC--e
Confidence 44556666666677776 77888999999999999875 5555555443 1 2445667777776 3
Q ss_pred EEECC-CCEEEEEECCCC-------eEEEEecCCCCCC-----CC------CC-----------CCc--ccccccCCcee
Q 001380 673 VADTE-NHALREIDFVND-------TVRTLAGNGTKGS-----DY------QG-----------GEK--GTSQLLNSPWD 720 (1089)
Q Consensus 673 VaD~~-n~~I~~~d~~~g-------~v~~~ag~g~~~~-----~~------~~-----------~~~--~~~~~l~~P~~ 720 (1089)
||-.+ ++.-.++++.+. ..+.+.|....-+ +. .| +.. ....+...-..
T Consensus 112 VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~s 191 (343)
T KOG0286|consen 112 VACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMS 191 (343)
T ss_pred EEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEE
Confidence 44332 333333433321 1112222111000 00 00 000 00011123456
Q ss_pred EEEecCCCEEEEEECCCcEEEEEECCCCe-EEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEE
Q 001380 721 VCYKPINEKVYIAMAGQHQIWEHSTVDGV-TRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRA 799 (1089)
Q Consensus 721 la~~~~g~~lyvad~~~~~I~~~~~~~g~-~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~ 799 (1089)
|.+.|...+.||+......-..||...+. ++.|.|... .-+.+.+.|+| .-|++-+...+.|.
T Consensus 192 lsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghes---------------DINsv~ffP~G-~afatGSDD~tcRl 255 (343)
T KOG0286|consen 192 LSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHES---------------DINSVRFFPSG-DAFATGSDDATCRL 255 (343)
T ss_pred EecCCCCCCeEEecccccceeeeeccCcceeEeeccccc---------------ccceEEEccCC-CeeeecCCCceeEE
Confidence 77888556899998877777777776664 456765432 34578999998 89999999999999
Q ss_pred EEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccCCcEEEEeCCCCEEEEEeC-CCCeEEEEeccCC
Q 001380 800 LNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDP-ASNRVSTLAGIGK 878 (1089)
Q Consensus 800 ~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~lyVaD~~n~~I~~~d~-~~~~v~t~~g~g~ 878 (1089)
|++..+....+-... .....-.+|+++..|++..+-..+..+.+.|. .+..+..+.|.
T Consensus 256 yDlRaD~~~a~ys~~-------------------~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GH-- 314 (343)
T KOG0286|consen 256 YDLRADQELAVYSHD-------------------SIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGH-- 314 (343)
T ss_pred EeecCCcEEeeeccC-------------------cccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeecc--
Confidence 998865443221110 11334578999999999999888888999986 45566667653
Q ss_pred CCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEEEE
Q 001380 879 AGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYL 918 (1089)
Q Consensus 879 ~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~ 918 (1089)
=++-++|.+.+||..+-+.++...|++.
T Consensus 315 ------------eNRvScl~~s~DG~av~TgSWDs~lriW 342 (343)
T KOG0286|consen 315 ------------ENRVSCLGVSPDGMAVATGSWDSTLRIW 342 (343)
T ss_pred ------------CCeeEEEEECCCCcEEEecchhHheeec
Confidence 3567888888888877777777777654
No 325
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=98.18 E-value=2.3e-06 Score=58.23 Aligned_cols=28 Identities=25% Similarity=0.650 Sum_probs=26.1
Q ss_pred cCCCceEEEccCCcEEEEECCCCEEEEE
Q 001380 891 LSEPAGIIEAQNGNLFIADTNNNIIRYL 918 (1089)
Q Consensus 891 l~~P~gi~vd~~G~lyVad~~n~~I~~~ 918 (1089)
|+.|.||+++++|+|||+|++||+|++|
T Consensus 1 f~~P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 1 FNYPHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp BSSEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcCCcEEEEeCCCCEEEEECCCCEEEEC
Confidence 5679999999999999999999999986
No 326
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.18 E-value=3.9e-06 Score=79.79 Aligned_cols=79 Identities=15% Similarity=0.196 Sum_probs=51.2
Q ss_pred cccCCCEEEEEEecCCCcchhhhhhhHH---HHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCCh
Q 001380 449 RDLKGKVVVLDFWTYCCINCMHVLPDLE---FLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDM 525 (1089)
Q Consensus 449 ~~~~gk~vll~Fwa~wC~~C~~~~p~l~---~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~ 525 (1089)
..-++|+|+|+|++.||++|+.+....- ++.+.. ++++.+|-+.. +.+ |.+.
T Consensus 19 Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l-~~~Fv~V~l~~-----d~t-------------------d~~~ 73 (130)
T cd02960 19 AKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLA-QEDFIMLNLVH-----ETT-------------------DKNL 73 (130)
T ss_pred HHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHH-HhCeEEEEEEe-----ccC-------------------CCCc
Confidence 3447899999999999999998866542 122222 23466666632 111 0000
Q ss_pred hHHHHhCCCceeEEEEECCCCcEEEEecCCC
Q 001380 526 NLWRELGVNSWPTFAVVGPNGKLLAQLAGEG 556 (1089)
Q Consensus 526 ~l~~~~~v~~~Pt~~lid~~G~i~~~~~G~~ 556 (1089)
. ..+ .++|+++++|++|+++.+..|..
T Consensus 74 ~---~~g-~~vPtivFld~~g~vi~~i~Gy~ 100 (130)
T cd02960 74 S---PDG-QYVPRIMFVDPSLTVRADITGRY 100 (130)
T ss_pred C---ccC-cccCeEEEECCCCCCcccccccc
Confidence 0 022 47899999999999999887754
No 327
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=98.17 E-value=2.3e-05 Score=86.05 Aligned_cols=68 Identities=13% Similarity=0.163 Sum_probs=53.5
Q ss_pred CCCCCHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccCCH
Q 001380 220 NLKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSL 291 (1089)
Q Consensus 220 ~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~i 291 (1089)
.+-.|...++.+++++|++++++++|||+.||+.|.+.+|+..+. +...+++++ .+++++.+-.+-.+
T Consensus 185 ~~~~K~~~i~~~~~~~~~~~~~~~~~GD~~nD~~m~~~~~~~~a~---~na~~~~k~-~a~~~~~~n~~dGV 252 (256)
T TIGR00099 185 KGVSKGSALQSLAEALGISLEDVIAFGDGMNDIEMLEAAGYGVAM---GNADEELKA-LADYVTDSNNEDGV 252 (256)
T ss_pred CCCChHHHHHHHHHHcCCCHHHEEEeCCcHHhHHHHHhCCceeEe---cCchHHHHH-hCCEEecCCCCcch
Confidence 356688899999999999999999999999999999999975333 334555554 58888887655433
No 328
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=98.17 E-value=5e-06 Score=91.72 Aligned_cols=75 Identities=16% Similarity=0.193 Sum_probs=59.1
Q ss_pred cCCCCCHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccCCHHHHHhc
Q 001380 219 ENLKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDILTG 297 (1089)
Q Consensus 219 ~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~i~~ll~~ 297 (1089)
..+.-|...++.+++++|++++++++|||+.||+.|-+.+| .+|..+...+++++ .++++..+-.+-.+...|+.
T Consensus 185 ~~g~~K~~al~~l~~~lgi~~~~v~afGD~~ND~~Ml~~ag---~gvam~Na~~~~k~-~A~~vt~~n~~~Gv~~~l~~ 259 (264)
T COG0561 185 PKGVSKGYALQRLAKLLGIKLEEVIAFGDSTNDIEMLEVAG---LGVAMGNADEELKE-LADYVTTSNDEDGVAEALEK 259 (264)
T ss_pred cCCCchHHHHHHHHHHhCCCHHHeEEeCCccccHHHHHhcC---eeeeccCCCHHHHh-hCCcccCCccchHHHHHHHH
Confidence 45677888999999999999999999999999999999999 55666655555555 45577777777666666543
No 329
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.16 E-value=0.00058 Score=80.81 Aligned_cols=201 Identities=17% Similarity=0.188 Sum_probs=121.9
Q ss_pred eEEEeecCCeEEEEeC--CCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEE-E-CCCCE
Q 001380 605 KLAIDILNNRLFISDS--NHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVA-D-TENHA 680 (1089)
Q Consensus 605 ~vavd~~~g~L~vsd~--~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVa-D-~~n~~ 680 (1089)
..+++|++.+|+++.. ++..|++++.++.....+... . | .....+++|+|+.|+++ + .++..
T Consensus 200 ~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~-~-g------------~~~~~~~SPDG~~la~~~~~~g~~~ 265 (427)
T PRK02889 200 SPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANF-K-G------------SNSAPAWSPDGRTLAVALSRDGNSQ 265 (427)
T ss_pred cceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecC-C-C------------CccceEECCCCCEEEEEEccCCCce
Confidence 3467775666665543 345799999875444444321 1 1 12467899999877764 3 34568
Q ss_pred EEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEEC--CCcEEEEEECCCCeEEEEeCCCc
Q 001380 681 LREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMA--GQHQIWEHSTVDGVTRAFSGDGY 758 (1089)
Q Consensus 681 I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~--~~~~I~~~~~~~g~~~~~~g~g~ 758 (1089)
|+.+|.+++..+.+.... + .....+|+|+|..|+++.. +..+||.++..++..+.+...+.
T Consensus 266 Iy~~d~~~~~~~~lt~~~--~---------------~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~ 328 (427)
T PRK02889 266 IYTVNADGSGLRRLTQSS--G---------------IDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGS 328 (427)
T ss_pred EEEEECCCCCcEECCCCC--C---------------CCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCC
Confidence 999998887776664211 0 1234579999988776542 45689999988776655542110
Q ss_pred cccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCC--CeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccc
Q 001380 759 ERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSES--SSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLL 836 (1089)
Q Consensus 759 ~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~--~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l 836 (1089)
.....+++|+|+.|+++.... ..|+.+++.++..+.+..+.
T Consensus 329 ---------------~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~---------------------- 371 (427)
T PRK02889 329 ---------------YNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDTT---------------------- 371 (427)
T ss_pred ---------------CcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCCC----------------------
Confidence 112457899998887765443 37899998877765543210
Q ss_pred cCceEEEEccCCc-E-EEEeCCC-CEEEEEeCCCCeEEEEe
Q 001380 837 QHPLGVYCAKNGQ-I-YVADSYN-HKIKKLDPASNRVSTLA 874 (1089)
Q Consensus 837 ~~P~gva~~~~G~-l-yVaD~~n-~~I~~~d~~~~~v~t~~ 874 (1089)
.-....+++||+ | |.++.++ ..+..++.++.....+.
T Consensus 372 -~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~~~~~l~ 411 (427)
T PRK02889 372 -RDESPSFAPNGRYILYATQQGGRSVLAAVSSDGRIKQRLS 411 (427)
T ss_pred -CccCceECCCCCEEEEEEecCCCEEEEEEECCCCceEEee
Confidence 012347888985 3 4444333 34777787665555553
No 330
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.16 E-value=0.002 Score=69.49 Aligned_cols=229 Identities=16% Similarity=0.170 Sum_probs=129.8
Q ss_pred CCEEEEEeC-CCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEEEEECCCCeEEEEecCCCC
Q 001380 622 HNRIVVTDL-DGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTK 700 (1089)
Q Consensus 622 ~~~I~~~~~-~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~v~~~ag~g~~ 700 (1089)
++.|..+|+ +|+.+...... .. +..+...++.. ++.+|+++ .++.|+.+|..+|++.--......
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~-~~-----------~~~~~~~~~~~-~~~v~~~~-~~~~l~~~d~~tG~~~W~~~~~~~ 67 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLG-PG-----------IGGPVATAVPD-GGRVYVAS-GDGNLYALDAKTGKVLWRFDLPGP 67 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECS-SS-----------CSSEEETEEEE-TTEEEEEE-TTSEEEEEETTTSEEEEEEECSSC
T ss_pred CCEEEEEECCCCCEEEEEECC-CC-----------CCCccceEEEe-CCEEEEEc-CCCEEEEEECCCCCEEEEeecccc
Confidence 467888887 68888776542 10 12222224543 45599995 688999999877775433321110
Q ss_pred CCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEE-eCCCccccCCCCCCCCccccCCceEE
Q 001380 701 GSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAF-SGDGYERNLNGSSSLNTSFAQPSGIS 779 (1089)
Q Consensus 701 ~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~-~g~g~~~~~~g~~~~~~~~~~P~gla 779 (1089)
+..+ ..++ ++.+|+.... ++|+.+|..+|.+..- .....+ ...+..+...+
T Consensus 68 --------------~~~~--~~~~--~~~v~v~~~~-~~l~~~d~~tG~~~W~~~~~~~~---------~~~~~~~~~~~ 119 (238)
T PF13360_consen 68 --------------ISGA--PVVD--GGRVYVGTSD-GSLYALDAKTGKVLWSIYLTSSP---------PAGVRSSSSPA 119 (238)
T ss_dssp --------------GGSG--EEEE--TTEEEEEETT-SEEEEEETTTSCEEEEEEE-SSC---------TCSTB--SEEE
T ss_pred --------------ccce--eeec--ccccccccce-eeeEecccCCcceeeeecccccc---------ccccccccCce
Confidence 1111 2232 4589988844 4999999888876543 221100 01133344455
Q ss_pred EcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccCCcEEEEeCCCCE
Q 001380 780 LSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHK 859 (1089)
Q Consensus 780 v~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~lyVaD~~n~~ 859 (1089)
++ ++.+|++.. ++.|+.+++++|....-... +...+...-..+....+-.+-.+|.+|++.....
T Consensus 120 ~~--~~~~~~~~~-~g~l~~~d~~tG~~~w~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~- 184 (238)
T PF13360_consen 120 VD--GDRLYVGTS-SGKLVALDPKTGKLLWKYPV-----------GEPRGSSPISSFSDINGSPVISDGRVYVSSGDGR- 184 (238)
T ss_dssp EE--TTEEEEEET-CSEEEEEETTTTEEEEEEES-----------STT-SS--EEEETTEEEEEECCTTEEEEECCTSS-
T ss_pred Ee--cCEEEEEec-cCcEEEEecCCCcEEEEeec-----------CCCCCCcceeeecccccceEEECCEEEEEcCCCe-
Confidence 55 448888875 68999999988766422211 0000000000112222333333668999886654
Q ss_pred EEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEEEEeCCCC
Q 001380 860 IKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLDLNKE 923 (1089)
Q Consensus 860 I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~~~~~~ 923 (1089)
+..+|..++... +... +..+.++....++.||+.+ .+++|..+++.++
T Consensus 185 ~~~~d~~tg~~~-w~~~--------------~~~~~~~~~~~~~~l~~~~-~~~~l~~~d~~tG 232 (238)
T PF13360_consen 185 VVAVDLATGEKL-WSKP--------------ISGIYSLPSVDGGTLYVTS-SDGRLYALDLKTG 232 (238)
T ss_dssp EEEEETTTTEEE-EEEC--------------SS-ECECEECCCTEEEEEE-TTTEEEEEETTTT
T ss_pred EEEEECCCCCEE-EEec--------------CCCccCCceeeCCEEEEEe-CCCEEEEEECCCC
Confidence 666699888755 3321 2234443344466899998 7899999999887
No 331
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.15 E-value=0.00056 Score=80.92 Aligned_cols=202 Identities=16% Similarity=0.186 Sum_probs=124.3
Q ss_pred eEEEeecCCeEEEE-e-CCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEEC--CCCE
Q 001380 605 KLAIDILNNRLFIS-D-SNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADT--ENHA 680 (1089)
Q Consensus 605 ~vavd~~~g~L~vs-d-~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~--~n~~ 680 (1089)
..+++|++.+|.++ . .+...|+.++.++.....+... .. ....++++|+|+.|+++.. ++..
T Consensus 203 ~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~-~~-------------~~~~~~~SPDG~~La~~~~~~g~~~ 268 (429)
T PRK03629 203 SPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF-PR-------------HNGAPAFSPDGSKLAFALSKTGSLN 268 (429)
T ss_pred eeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCC-CC-------------CcCCeEECCCCCEEEEEEcCCCCcE
Confidence 45777755555543 2 2345688777764433333221 00 1134689999988877633 3457
Q ss_pred EEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEE-C-CCcEEEEEECCCCeEEEEeCCCc
Q 001380 681 LREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAM-A-GQHQIWEHSTVDGVTRAFSGDGY 758 (1089)
Q Consensus 681 I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad-~-~~~~I~~~~~~~g~~~~~~g~g~ 758 (1089)
|+.+|.+++.++.+.... ......+|+|+|+.|+++. . +..+||.++..++....+...+
T Consensus 269 I~~~d~~tg~~~~lt~~~-----------------~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~- 330 (429)
T PRK03629 269 LYVMDLASGQIRQVTDGR-----------------SNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEG- 330 (429)
T ss_pred EEEEECCCCCEEEccCCC-----------------CCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCC-
Confidence 999999988887775221 1234578999998775554 3 3458999999888776664221
Q ss_pred cccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCC--CeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccc
Q 001380 759 ERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSES--SSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLL 836 (1089)
Q Consensus 759 ~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~--~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l 836 (1089)
......+++|||+.|+++...+ ..|+.++++++..+.+.... .
T Consensus 331 --------------~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~------------~--------- 375 (429)
T PRK03629 331 --------------SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTF------------L--------- 375 (429)
T ss_pred --------------CCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCC------------C---------
Confidence 1123578899998887765443 46888898877766553210 0
Q ss_pred cCceEEEEccCCc-EEEEeCC--CCEEEEEeCCCCeEEEEec
Q 001380 837 QHPLGVYCAKNGQ-IYVADSY--NHKIKKLDPASNRVSTLAG 875 (1089)
Q Consensus 837 ~~P~gva~~~~G~-lyVaD~~--n~~I~~~d~~~~~v~t~~g 875 (1089)
-....+++||+ |+.+... ...+..++.+++...++.+
T Consensus 376 --~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~~~l~~ 415 (429)
T PRK03629 376 --DETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPA 415 (429)
T ss_pred --CCCceECCCCCEEEEEEcCCCceEEEEEECCCCCeEECcc
Confidence 01235788995 4444332 3346778887777777753
No 332
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=98.14 E-value=5e-06 Score=90.27 Aligned_cols=89 Identities=16% Similarity=0.262 Sum_probs=76.6
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCChHhHH--HHHHHCCCCCC-CccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCc
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSADRIKVD--ANLAAAGLPVS-MFDAIVSADAFENLKPAPDIFLSASKILNVPTSE 241 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~--~~l~~~gl~~~-~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~ 241 (1089)
.++||+.++|++|+++|++++++||+.+.... ..++++|+. . +|+.|+++++... ..+.++++++++++++
T Consensus 24 ~~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~gl~-~~~~~~Ii~s~~~~~-----~~l~~~~~~~~~~~~~ 97 (242)
T TIGR01459 24 HTYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSLGIN-ADLPEMIISSGEIAV-----QMILESKKRFDIRNGI 97 (242)
T ss_pred ccCccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHHCCCC-ccccceEEccHHHHH-----HHHHhhhhhccCCCce
Confidence 57999999999999999999999998776655 789999997 6 8999999986653 5777778889999999
Q ss_pred EEEEcCChhhHHHHHHcC
Q 001380 242 CIVIEDALAGVQAAKAAQ 259 (1089)
Q Consensus 242 ~v~VGD~~~Di~aA~~aG 259 (1089)
+++|||+..|+......|
T Consensus 98 ~~~vGd~~~d~~~~~~~~ 115 (242)
T TIGR01459 98 IYLLGHLENDIINLMQCY 115 (242)
T ss_pred EEEeCCcccchhhhcCCC
Confidence 999999998888775544
No 333
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=98.13 E-value=1.1e-05 Score=86.73 Aligned_cols=85 Identities=19% Similarity=0.230 Sum_probs=64.9
Q ss_pred CccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCC-------------------------
Q 001380 167 FPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENL------------------------- 221 (1089)
Q Consensus 167 ~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~------------------------- 221 (1089)
-|++.++|++|+++|++++|+||+.++.+...++.+|+. .+|+.+++++.....
T Consensus 150 dp~V~EtL~eLkekGikLaIvTNg~Re~v~~~Le~lgL~-~yFDvII~~g~i~~k~~~~~~~d~~~~~~~~~~~f~~d~~ 228 (303)
T PHA03398 150 DPFVYDSLDELKERGCVLVLWSYGNREHVVHSLKETKLE-GYFDIIICGGRKAGEYSRRVIVDNKYKMVFVKKPFYLDVT 228 (303)
T ss_pred ChhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHcCCC-ccccEEEECCCcccccccceeecccceeEEecCceeEeCC
Confidence 389999999999999999999999999999999999997 999999998754321
Q ss_pred ----CC-CHHHHHHHHHHcCCCC-CcEEEEcCCh-hhH
Q 001380 222 ----KP-APDIFLSASKILNVPT-SECIVIEDAL-AGV 252 (1089)
Q Consensus 222 ----KP-~~~~~~~~l~~lgv~p-~~~v~VGD~~-~Di 252 (1089)
-| +|.+....+++.|+.. +.+-.|.|=. ||+
T Consensus 229 ~~~~lPKSprvVl~yL~~~gvn~~KtiTLVDDl~~Nn~ 266 (303)
T PHA03398 229 DVKNLPKSPRVVLWYLRKKGVNYFKTITLVDDLKSNNY 266 (303)
T ss_pred cccCCCCCCeehHHHHHHcCcceeccEEEeccCcccCc
Confidence 11 3455666677777654 4455565555 443
No 334
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=98.13 E-value=3.2e-05 Score=85.68 Aligned_cols=83 Identities=16% Similarity=0.174 Sum_probs=55.2
Q ss_pred HHHHhCCCeEEEE---cCCChHhHHHHHHHCCCCC---CCccEEEEcCCccCCCCCHHHHHHHHHHcCCCC-CcEEEEcC
Q 001380 175 NQCKSKGLKVAVA---SSADRIKVDANLAAAGLPV---SMFDAIVSADAFENLKPAPDIFLSASKILNVPT-SECIVIED 247 (1089)
Q Consensus 175 ~~Lk~~Gi~vaIv---Sn~~~~~~~~~l~~~gl~~---~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p-~~~v~VGD 247 (1089)
+.++..++...++ +....+.+...++..++.. .++. +-...+ .+...++++++++|+++ +++++|||
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-----ei~~~~-~Kg~al~~l~~~~~i~~~~~v~~~GD 215 (273)
T PRK00192 142 RLAKDREFSEPFLWNGSEAAKERFEEALKRLGLKVTRGGRFL-----HLLGGG-DKGKAVRWLKELYRRQDGVETIALGD 215 (273)
T ss_pred HHHHhcccCCceeecCchHHHHHHHHHHHHcCCEEEECCeEE-----EEeCCC-CHHHHHHHHHHHHhccCCceEEEEcC
Confidence 3345555655555 4334455555566555420 1111 222234 56778999999999999 99999999
Q ss_pred ChhhHHHHHHcCCeEE
Q 001380 248 ALAGVQAAKAAQMRCI 263 (1089)
Q Consensus 248 ~~~Di~aA~~aG~~~i 263 (1089)
+.||+.|++.+|+.++
T Consensus 216 s~NDi~m~~~ag~~va 231 (273)
T PRK00192 216 SPNDLPMLEAADIAVV 231 (273)
T ss_pred ChhhHHHHHhCCeeEE
Confidence 9999999999995433
No 335
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=2.1e-05 Score=74.52 Aligned_cols=117 Identities=17% Similarity=0.143 Sum_probs=95.5
Q ss_pred CCCCCCCCCCccccCCCCCceeecccccCCCEEEEEEec-CCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhc
Q 001380 424 RKTTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWT-YCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKD 502 (1089)
Q Consensus 424 ~~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa-~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~ 502 (1089)
.++|+++|+|++... +.+.+++ .+++||..+|+.+- -..+-|-.+...+++...++.+ ..++.||. |-
T Consensus 18 ~~vGd~ap~ftl~~~--dL~~v~l-~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~~--~~Vl~IS~------DL 86 (158)
T COG2077 18 PQVGDKAPDFTLVGK--DLNDVSL-ADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKLGN--TVVLCISM------DL 86 (158)
T ss_pred CccCCcCCceEEEcC--cccceec-cccCCceEEEEEccCCCCchhhHHHHHHHHHHhccCC--cEEEEEeC------CC
Confidence 579999999997654 6667888 89999998888774 5677799999999999888764 77888875 67
Q ss_pred HHHHHHHHHHcCCc-cceeecC-ChhHHHHhCCC--ce-------eEEEEECCCCcEEEE
Q 001380 503 LEAIRNAVLRYGIS-HPVVNDG-DMNLWRELGVN--SW-------PTFAVVGPNGKLLAQ 551 (1089)
Q Consensus 503 ~~~~~~~~~~~~~~-~~v~~d~-~~~l~~~~~v~--~~-------Pt~~lid~~G~i~~~ 551 (1089)
+-+..+|+...|++ ...+.|- +.++.++|||. .. .+.|++|.+|++++.
T Consensus 87 PFAq~RfC~aeGi~nv~~lSd~r~~~Fge~yGv~I~egpL~gLlARaV~V~De~g~V~y~ 146 (158)
T COG2077 87 PFAQKRFCGAEGIENVITLSDFRDRAFGENYGVLINEGPLAGLLARAVFVLDENGKVTYS 146 (158)
T ss_pred hhHHhhhhhhcCcccceEhhhhhhhhhhHhhCEEeccccccCeeeeEEEEEcCCCcEEEE
Confidence 88899999999998 4566664 55688999973 33 488999999999987
No 336
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=98.13 E-value=1.4e-05 Score=73.45 Aligned_cols=120 Identities=17% Similarity=0.262 Sum_probs=95.4
Q ss_pred CCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCcEE
Q 001380 164 GIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECI 243 (1089)
Q Consensus 164 ~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~v 243 (1089)
..+|+.+.+.+++|++. +.++|+|+...-.+...++-.|++ .+.++... ++++-..+++.++-+-+.|+
T Consensus 29 Gklf~ev~e~iqeL~d~-V~i~IASgDr~gsl~~lae~~gi~---~~rv~a~a-------~~e~K~~ii~eLkk~~~k~v 97 (152)
T COG4087 29 GKLFSEVSETIQELHDM-VDIYIASGDRKGSLVQLAEFVGIP---VERVFAGA-------DPEMKAKIIRELKKRYEKVV 97 (152)
T ss_pred cEEcHhhHHHHHHHHHh-heEEEecCCcchHHHHHHHHcCCc---eeeeeccc-------CHHHHHHHHHHhcCCCcEEE
Confidence 47899999999999999 999999998888899999999998 55555443 35777888899988779999
Q ss_pred EEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccCCHHHHHhc
Q 001380 244 VIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDILTG 297 (1089)
Q Consensus 244 ~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~i~~ll~~ 297 (1089)
||||+.||+.+.++|.+-.+-+..+...+.+.. .+|+++.++.++ -+++..
T Consensus 98 mVGnGaND~laLr~ADlGI~tiq~e~v~~r~l~-~ADvvik~i~e~--ldl~~~ 148 (152)
T COG4087 98 MVGNGANDILALREADLGICTIQQEGVPERLLL-TADVVLKEIAEI--LDLLKD 148 (152)
T ss_pred EecCCcchHHHhhhcccceEEeccCCcchHHHh-hchhhhhhHHHH--HHHhhc
Confidence 999999999999999877666654433333333 588999988877 555543
No 337
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=98.11 E-value=3.9e-06 Score=90.80 Aligned_cols=109 Identities=10% Similarity=0.088 Sum_probs=72.0
Q ss_pred CCeEEEEcCCC----hHhHHHHHHHCCCCCCCccEEEEc----CCccCCCCCHHHHHHHHHHcCCCCCcEEEEcCChhhH
Q 001380 181 GLKVAVASSAD----RIKVDANLAAAGLPVSMFDAIVSA----DAFENLKPAPDIFLSASKILNVPTSECIVIEDALAGV 252 (1089)
Q Consensus 181 Gi~vaIvSn~~----~~~~~~~l~~~gl~~~~fd~i~~~----~~~~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di 252 (1089)
.+++.+..... .+.+...++..+.. +..+.++ +-...+++|...++.+++++|++++++++|||+.||+
T Consensus 112 ~~~i~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~ei~~~~~~K~~al~~l~~~~g~~~~~~i~~GD~~nD~ 188 (236)
T TIGR02471 112 PFKISYLLDPEGEPILPQIRQRLRQQSQA---AKVILSCGWFLDVLPLRASKGLALRYLSYRWGLPLEQILVAGDSGNDE 188 (236)
T ss_pred CeeEEEEECcccchHHHHHHHHHHhccCC---EEEEEECCceEEEeeCCCChHHHHHHHHHHhCCCHHHEEEEcCCccHH
Confidence 35666665432 12344555555543 3445555 3455678999999999999999999999999999999
Q ss_pred HHHHHcCCeEEEEcCCCCHHHHhhcCCc----EEecCcccCCHHHHHh
Q 001380 253 QAAKAAQMRCIAVTTTLSEERLKEASPS----LIRKEIGSVSLNDILT 296 (1089)
Q Consensus 253 ~aA~~aG~~~i~V~~g~~~~~l~~~~~d----~vi~dl~el~i~~ll~ 296 (1089)
.|.+.+|.. +.+ +...+++++. ++ ++..+-.+-.+.+.|.
T Consensus 189 ~ml~~~~~~-iav--~na~~~~k~~-a~~~~~~v~~~~~~~Gv~~~i~ 232 (236)
T TIGR02471 189 EMLRGLTLG-VVV--GNHDPELEGL-RHQQRIYFANNPHAFGILEGIN 232 (236)
T ss_pred HHHcCCCcE-EEE--cCCcHHHHHh-hcCCcEEEcCCCChhHHHHHHH
Confidence 999999843 333 4455566553 44 6665544444455543
No 338
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=98.11 E-value=7.6e-06 Score=99.61 Aligned_cols=117 Identities=14% Similarity=0.160 Sum_probs=86.2
Q ss_pred CCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCcE
Q 001380 163 SGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSEC 242 (1089)
Q Consensus 163 ~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~ 242 (1089)
...++||+.+++++|+++|++++++|+.....++.+++++|++ ++ ++ . ..++|.+ .+++++.++++|
T Consensus 403 ~d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~~ia~~lgi~--~~-----~~-~-~p~~K~~----~v~~l~~~~~~v 469 (562)
T TIGR01511 403 EDQLRPEAKEVIQALKRRGIEPVMLTGDNRKTAKAVAKELGIN--VR-----AE-V-LPDDKAA----LIKELQEKGRVV 469 (562)
T ss_pred cccccHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHcCCc--EE-----cc-C-ChHHHHH----HHHHHHHcCCEE
Confidence 3467999999999999999999999999999999999999994 22 11 1 1123333 444444467899
Q ss_pred EEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEec--CcccCCHHHHHhcc
Q 001380 243 IVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRK--EIGSVSLNDILTGG 298 (1089)
Q Consensus 243 v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~--dl~el~i~~ll~~~ 298 (1089)
+||||+.+|+.+++++|+ +|.+|.. .+.....+|+++. ++.++ .+++...
T Consensus 470 ~~VGDg~nD~~al~~A~v---gia~g~g-~~~a~~~Advvl~~~~l~~l--~~~i~ls 521 (562)
T TIGR01511 470 AMVGDGINDAPALAQADV---GIAIGAG-TDVAIEAADVVLMRNDLNDV--ATAIDLS 521 (562)
T ss_pred EEEeCCCccHHHHhhCCE---EEEeCCc-CHHHHhhCCEEEeCCCHHHH--HHHHHHH
Confidence 999999999999999994 5655542 3444457898884 66555 5555443
No 339
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=98.11 E-value=3.2e-05 Score=84.28 Aligned_cols=67 Identities=12% Similarity=0.097 Sum_probs=52.6
Q ss_pred CCCCHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccCCH
Q 001380 221 LKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSL 291 (1089)
Q Consensus 221 ~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~i 291 (1089)
.--|...++.+++.+|++++++++|||+.||+.|.+.+| ..|..+...++++. .++++..+-.+-.+
T Consensus 184 ~vsK~~ai~~l~~~~~i~~~~~~~~GD~~ND~~Ml~~~~---~~~am~na~~~~k~-~a~~i~~~~~~~gv 250 (254)
T PF08282_consen 184 GVSKGSAIKYLLEYLGISPEDIIAFGDSENDIEMLELAG---YSVAMGNATPELKK-AADYITPSNNDDGV 250 (254)
T ss_dssp TSSHHHHHHHHHHHHTTSGGGEEEEESSGGGHHHHHHSS---EEEEETTS-HHHHH-HSSEEESSGTCTHH
T ss_pred CCCHHHHHHHHhhhcccccceeEEeecccccHhHHhhcC---eEEEEcCCCHHHHH-hCCEEecCCCCChH
Confidence 556778899999999999999999999999999999999 34444555666655 57888877766433
No 340
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=98.11 E-value=5.3e-06 Score=56.46 Aligned_cols=28 Identities=43% Similarity=0.729 Sum_probs=26.1
Q ss_pred ccCceEEEEccCCcEEEEeCCCCEEEEE
Q 001380 836 LQHPLGVYCAKNGQIYVADSYNHKIKKL 863 (1089)
Q Consensus 836 l~~P~gva~~~~G~lyVaD~~n~~I~~~ 863 (1089)
|..|.||+++++|+|||+|+.||+|++|
T Consensus 1 f~~P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 1 FNYPHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp BSSEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcCCcEEEEeCCCCEEEEECCCCEEEEC
Confidence 4689999999999999999999999986
No 341
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=98.10 E-value=7.5e-06 Score=98.29 Aligned_cols=87 Identities=22% Similarity=0.398 Sum_probs=68.5
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCC-C-CEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHH
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKD-M-PFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWR 529 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~-~-~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~ 529 (1089)
.++.+||+||++||++|+.+.|.++++++++++ . ++.++.+.+. ..++..
T Consensus 363 ~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~----------------------------~n~~~~ 414 (462)
T TIGR01130 363 ETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDAT----------------------------ANDVPP 414 (462)
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECC----------------------------CCccCC
Confidence 579999999999999999999999999999987 3 6888888541 112333
Q ss_pred HhCCCceeEEEEECCCCcE-EEEecCCCchhhHHHHHHH
Q 001380 530 ELGVNSWPTFAVVGPNGKL-LAQLAGEGHRKDLDDLVEA 567 (1089)
Q Consensus 530 ~~~v~~~Pt~~lid~~G~i-~~~~~G~~~~~~l~~~l~~ 567 (1089)
|++.++|+++++.+.++. ...+.|..+.+.+.++|.+
T Consensus 415 -~~i~~~Pt~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~ 452 (462)
T TIGR01130 415 -FEVEGFPTIKFVPAGKKSEPVPYDGDRTLEDFSKFIAK 452 (462)
T ss_pred -CCccccCEEEEEeCCCCcCceEecCcCCHHHHHHHHHh
Confidence 899999999999666552 3567788788777777654
No 342
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.10 E-value=0.0012 Score=67.46 Aligned_cols=88 Identities=20% Similarity=0.332 Sum_probs=62.9
Q ss_pred ccCceEEEEccCC-cEEEEeCCCCEEEEEe--CCCCeEEE---EeccCCCCCCCCcccccccCCCceEEEccCCcEEEEE
Q 001380 836 LQHPLGVYCAKNG-QIYVADSYNHKIKKLD--PASNRVST---LAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIAD 909 (1089)
Q Consensus 836 l~~P~gva~~~~G-~lyVaD~~n~~I~~~d--~~~~~v~t---~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad 909 (1089)
+.-|.|+++|.+. ..|+.|+.|+.|..+| -.||.++. +-.-... ..-.-..|.|+++|.+|+||||-
T Consensus 157 v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~-------~~~e~~~PDGm~ID~eG~L~Va~ 229 (310)
T KOG4499|consen 157 VGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKS-------QPFESLEPDGMTIDTEGNLYVAT 229 (310)
T ss_pred ccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccC-------CCcCCCCCCcceEccCCcEEEEE
Confidence 4468899999765 6999999999996655 55654431 1100000 01123569999999999999999
Q ss_pred CCCCEEEEEeCCCCCceEEEEe
Q 001380 910 TNNNIIRYLDLNKEEPELQTLE 931 (1089)
Q Consensus 910 ~~n~~I~~~~~~~~~~~~~~l~ 931 (1089)
.+.++|.++++.++ ..+.++.
T Consensus 230 ~ng~~V~~~dp~tG-K~L~eik 250 (310)
T KOG4499|consen 230 FNGGTVQKVDPTTG-KILLEIK 250 (310)
T ss_pred ecCcEEEEECCCCC-cEEEEEE
Confidence 99999999999887 3445554
No 343
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=98.07 E-value=1.1e-05 Score=103.45 Aligned_cols=127 Identities=15% Similarity=0.234 Sum_probs=100.3
Q ss_pred CCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccC----------------CCCCHHH
Q 001380 164 GIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFEN----------------LKPAPDI 227 (1089)
Q Consensus 164 ~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~----------------~KP~~~~ 227 (1089)
.+++||+.+.++.|+++|+++.++|+.+...+..+.+++|+. ..++.++++++... ....|+-
T Consensus 527 Dp~r~~~~~~i~~l~~~Gi~v~miTGD~~~tA~~ia~~~Gi~-~~~~~~v~g~~l~~~~~~~l~~~~~~~~Vfar~~P~~ 605 (884)
T TIGR01522 527 DPPRPGVKEAVTTLITGGVRIIMITGDSQETAVSIARRLGMP-SKTSQSVSGEKLDAMDDQQLSQIVPKVAVFARASPEH 605 (884)
T ss_pred CcchhHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCC-CCCCceeEhHHhHhCCHHHHHHHhhcCeEEEECCHHH
Confidence 367999999999999999999999999999999999999996 66666666654432 3366666
Q ss_pred HHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEe--cCcccCCHHHHHh
Q 001380 228 FLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIR--KEIGSVSLNDILT 296 (1089)
Q Consensus 228 ~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi--~dl~el~i~~ll~ 296 (1089)
-..+.+.++-..+.+.||||+.||+.|.++|+ ++|..|.+..+.....+|+++ ++|..+ .+.+.
T Consensus 606 K~~iv~~lq~~g~~v~mvGDGvND~pAl~~Ad---VGia~g~~g~~va~~aaDivl~dd~~~~i--~~~i~ 671 (884)
T TIGR01522 606 KMKIVKALQKRGDVVAMTGDGVNDAPALKLAD---IGVAMGQTGTDVAKEAADMILTDDDFATI--LSAIE 671 (884)
T ss_pred HHHHHHHHHHCCCEEEEECCCcccHHHHHhCC---eeEecCCCcCHHHHHhcCEEEcCCCHHHH--HHHHH
Confidence 67777777666788999999999999999999 677776544555556789998 557666 44443
No 344
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.06 E-value=0.0012 Score=78.43 Aligned_cols=201 Identities=17% Similarity=0.157 Sum_probs=124.1
Q ss_pred eEEEeecCCeEE-EEeC-CCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEE--CCCCE
Q 001380 605 KLAIDILNNRLF-ISDS-NHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVAD--TENHA 680 (1089)
Q Consensus 605 ~vavd~~~g~L~-vsd~-~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD--~~n~~ 680 (1089)
..+++|++.+|+ +++. ++..|++++.++.....+... . | .....+++|+|+.|+++- .++..
T Consensus 203 ~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~--~----g--------~~~~~~~SpDG~~la~~~~~~g~~~ 268 (430)
T PRK00178 203 SPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNF--E----G--------LNGAPAWSPDGSKLAFVLSKDGNPE 268 (430)
T ss_pred eeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCC--C----C--------CcCCeEECCCCCEEEEEEccCCCce
Confidence 456777666664 4443 345788888875444443221 0 0 113578899998776543 23458
Q ss_pred EEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEEC--CCcEEEEEECCCCeEEEEeCCCc
Q 001380 681 LREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMA--GQHQIWEHSTVDGVTRAFSGDGY 758 (1089)
Q Consensus 681 I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~--~~~~I~~~~~~~g~~~~~~g~g~ 758 (1089)
|+.+|++++..+.+..... ......|+|+|+.|+++.. +..+|+.++..++....+...+.
T Consensus 269 Iy~~d~~~~~~~~lt~~~~-----------------~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~ 331 (430)
T PRK00178 269 IYVMDLASRQLSRVTNHPA-----------------IDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGN 331 (430)
T ss_pred EEEEECCCCCeEEcccCCC-----------------CcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCC
Confidence 9999999988877653110 1234578999988877653 34689999988887766542110
Q ss_pred cccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCC--eEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccc
Q 001380 759 ERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESS--SIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLL 836 (1089)
Q Consensus 759 ~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~--~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l 836 (1089)
.....+++|+|+.|+++....+ .|..+++.++..+.+.... . -
T Consensus 332 ---------------~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~~------------~--------~ 376 (430)
T PRK00178 332 ---------------YNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDTS------------L--------D 376 (430)
T ss_pred ---------------CccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCCC------------C--------C
Confidence 1124578999999988875443 6888898887776553210 0 0
Q ss_pred cCceEEEEccCCc-EEEEeC--CCCEEEEEeCCCCeEEEEe
Q 001380 837 QHPLGVYCAKNGQ-IYVADS--YNHKIKKLDPASNRVSTLA 874 (1089)
Q Consensus 837 ~~P~gva~~~~G~-lyVaD~--~n~~I~~~d~~~~~v~t~~ 874 (1089)
.. ..+++||+ ++++.. +..+|..++.+++....+.
T Consensus 377 ~~---p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~~~l~ 414 (430)
T PRK00178 377 ES---PSVAPNGTMLIYATRQQGRGVLMLVSINGRVRLPLP 414 (430)
T ss_pred CC---ceECCCCCEEEEEEecCCceEEEEEECCCCceEECc
Confidence 12 36788885 444433 2356788887766554543
No 345
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=98.05 E-value=3.7e-05 Score=83.95 Aligned_cols=92 Identities=17% Similarity=0.198 Sum_probs=65.8
Q ss_pred hCCCeEEEEcCCCh-----HhHHHHHHHCCCCCCCccEEEEc----CCccCCCCCHHHHHHHHHHcCCCCCcEEEEcCCh
Q 001380 179 SKGLKVAVASSADR-----IKVDANLAAAGLPVSMFDAIVSA----DAFENLKPAPDIFLSASKILNVPTSECIVIEDAL 249 (1089)
Q Consensus 179 ~~Gi~vaIvSn~~~-----~~~~~~l~~~gl~~~~fd~i~~~----~~~~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~ 249 (1089)
+.-+++.++..... ..+...+...++. +..++++ +....+.+|...++.+++++|++++++++|||+.
T Consensus 117 ~~~~k~~~~~~~~~~~~~~~~l~~~l~~~~~~---~~~~~~~~~~ldi~~~~~~K~~al~~l~~~~~i~~~~~i~~GD~~ 193 (249)
T TIGR01485 117 QRPHKVSFFLDPEAAPEVIKQLTEMLKETGLD---VKLIYSSGKDLDILPQGSGKGQALQYLLQKLAMEPSQTLVCGDSG 193 (249)
T ss_pred cCCeeEEEEechhhhhHHHHHHHHHHHhcCCC---EEEEEECCceEEEEeCCCChHHHHHHHHHHcCCCccCEEEEECCh
Confidence 34467777665321 2234455555554 3445555 4455688999999999999999999999999999
Q ss_pred hhHHHHHHcCCeEEEEcCCCCHHHHh
Q 001380 250 AGVQAAKAAQMRCIAVTTTLSEERLK 275 (1089)
Q Consensus 250 ~Di~aA~~aG~~~i~V~~g~~~~~l~ 275 (1089)
||+.|.+.++..++.+.. ..++++
T Consensus 194 ND~~ml~~~~~~~va~~n--a~~~~k 217 (249)
T TIGR01485 194 NDIELFEIGSVRGVIVSN--AQEELL 217 (249)
T ss_pred hHHHHHHccCCcEEEECC--CHHHHH
Confidence 999999997777777755 344444
No 346
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=98.04 E-value=0.0021 Score=69.42 Aligned_cols=215 Identities=15% Similarity=0.130 Sum_probs=114.7
Q ss_pred eEEEEeCCCCEEEEE--eCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEEEEECCCCeE
Q 001380 614 RLFISDSNHNRIVVT--DLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTV 691 (1089)
Q Consensus 614 ~L~vsd~~~~~I~~~--~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~v 691 (1089)
.|.++-...+++..+ +++|... .. +..|..|.|+++.+ +.||++- -..|+++--.....
T Consensus 19 Sla~sTYQagkL~~ig~~~~g~l~-~~--------------~r~F~r~MGl~~~~--~~l~~~t--~~qiw~f~~~~n~l 79 (335)
T TIGR03032 19 SLAVTTYQAGKLFFIGLQPNGELD-VF--------------ERTFPRPMGLAVSP--QSLTLGT--RYQLWRFANVDNLL 79 (335)
T ss_pred EEEEEeeecceEEEEEeCCCCcEE-EE--------------eeccCccceeeeeC--CeEEEEE--cceeEEcccccccc
Confidence 466666777777766 4455532 21 23488999999964 5599987 45677772211111
Q ss_pred EEEecCCCCCCCCCC-CCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCccccCCCCCCCCc
Q 001380 692 RTLAGNGTKGSDYQG-GEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNT 770 (1089)
Q Consensus 692 ~~~ag~g~~~~~~~~-~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~ 770 (1089)
..... ..+++..- ....-...--.-++|++ . ++.+|+.+..-+++-.+++....+-.+...=... .. ..
T Consensus 80 ~~~~~--~~~~D~~yvPr~~~~TGdidiHdia~-~-~~~l~fVNT~fSCLatl~~~~SF~P~WkPpFIs~-----la-~e 149 (335)
T TIGR03032 80 PAGQT--HPGYDRLYVPRASYVTGDIDAHDLAL-G-AGRLLFVNTLFSCLATVSPDYSFVPLWKPPFISK-----LA-PE 149 (335)
T ss_pred ccccc--CCCCCeEEeeeeeeeccCcchhheee-c-CCcEEEEECcceeEEEECCCCccccccCCccccc-----cC-cc
Confidence 11000 00111000 00000000125678888 3 3478888888888888887665544443110000 00 11
Q ss_pred cccCCceEEEcCCCCEEEEEeCCCC----eEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEcc
Q 001380 771 SFAQPSGISLSPDFMEIYVADSESS----SIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAK 846 (1089)
Q Consensus 771 ~~~~P~glav~~~g~~lyvad~~~~----~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~ 846 (1089)
--.+-+|||+. +|+--||+-.... .-|.-..++|.+.-+..+ .. .-.-|..|.+--+-
T Consensus 150 DRCHLNGlA~~-~g~p~yVTa~~~sD~~~gWR~~~~~gG~vidv~s~-ev---------------l~~GLsmPhSPRWh- 211 (335)
T TIGR03032 150 DRCHLNGMALD-DGEPRYVTALSQSDVADGWREGRRDGGCVIDIPSG-EV---------------VASGLSMPHSPRWY- 211 (335)
T ss_pred Cceeecceeee-CCeEEEEEEeeccCCcccccccccCCeEEEEeCCC-CE---------------EEcCccCCcCCcEe-
Confidence 12356899996 4657787654321 111111121211111110 00 00115566665553
Q ss_pred CCcEEEEeCCCCEEEEEeCCCCeEEEEec
Q 001380 847 NGQIYVADSYNHKIKKLDPASNRVSTLAG 875 (1089)
Q Consensus 847 ~G~lyVaD~~n~~I~~~d~~~~~v~t~~g 875 (1089)
+|++|++|++.++|.++|+++|....++-
T Consensus 212 dgrLwvldsgtGev~~vD~~~G~~e~Va~ 240 (335)
T TIGR03032 212 QGKLWLLNSGRGELGYVDPQAGKFQPVAF 240 (335)
T ss_pred CCeEEEEECCCCEEEEEcCCCCcEEEEEE
Confidence 79999999999999999999888888764
No 347
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=98.04 E-value=2.4e-05 Score=72.02 Aligned_cols=84 Identities=18% Similarity=0.210 Sum_probs=54.9
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCC---hHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCc
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSAD---RIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSE 241 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~---~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~ 241 (1089)
.++||+.++|+.|+++|++++++||++ ++.....|+.+|+. --.+.|+++. ......+++. ....+
T Consensus 14 ~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~-~~~~~i~ts~---------~~~~~~l~~~-~~~~~ 82 (101)
T PF13344_consen 14 EPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIP-VDEDEIITSG---------MAAAEYLKEH-KGGKK 82 (101)
T ss_dssp EE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT---GGGEEEHH---------HHHHHHHHHH-TTSSE
T ss_pred CcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcC-CCcCEEEChH---------HHHHHHHHhc-CCCCE
Confidence 468999999999999999999999974 35566677899997 3336666664 2233344432 23477
Q ss_pred EEEEcCChhhHHHHHHcCC
Q 001380 242 CIVIEDALAGVQAAKAAQM 260 (1089)
Q Consensus 242 ~v~VGD~~~Di~aA~~aG~ 260 (1089)
++++|-. ...+..+.+|+
T Consensus 83 v~vlG~~-~l~~~l~~~G~ 100 (101)
T PF13344_consen 83 VYVLGSD-GLREELREAGF 100 (101)
T ss_dssp EEEES-H-HHHHHHHHTTE
T ss_pred EEEEcCH-HHHHHHHHcCC
Confidence 8888855 44555556653
No 348
>PRK10671 copA copper exporting ATPase; Provisional
Probab=98.04 E-value=1.3e-05 Score=102.49 Aligned_cols=117 Identities=16% Similarity=0.218 Sum_probs=91.1
Q ss_pred CCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCcEE
Q 001380 164 GIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECI 243 (1089)
Q Consensus 164 ~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~v 243 (1089)
..++||+.+.|++|++.|++++++|+......+.+++++|+. .++..+ . |+.-.+++++++..+++++
T Consensus 649 d~~r~~a~~~i~~L~~~gi~v~~~Tgd~~~~a~~ia~~lgi~-~~~~~~---------~--p~~K~~~i~~l~~~~~~v~ 716 (834)
T PRK10671 649 DPLRSDSVAALQRLHKAGYRLVMLTGDNPTTANAIAKEAGID-EVIAGV---------L--PDGKAEAIKRLQSQGRQVA 716 (834)
T ss_pred CcchhhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC-EEEeCC---------C--HHHHHHHHHHHhhcCCEEE
Confidence 467899999999999999999999999999999999999996 443321 1 2334567788888889999
Q ss_pred EEcCChhhHHHHHHcCCeEEEEcCCC-CHHHHhhcCCcEEecCcccCCHHHHHhc
Q 001380 244 VIEDALAGVQAAKAAQMRCIAVTTTL-SEERLKEASPSLIRKEIGSVSLNDILTG 297 (1089)
Q Consensus 244 ~VGD~~~Di~aA~~aG~~~i~V~~g~-~~~~l~~~~~d~vi~dl~el~i~~ll~~ 297 (1089)
||||+.||+.+++++|+ +|.+|. +......+.+.+..+++.++ .+++..
T Consensus 717 ~vGDg~nD~~al~~Agv---gia~g~g~~~a~~~ad~vl~~~~~~~i--~~~i~l 766 (834)
T PRK10671 717 MVGDGINDAPALAQADV---GIAMGGGSDVAIETAAITLMRHSLMGV--ADALAI 766 (834)
T ss_pred EEeCCHHHHHHHHhCCe---eEEecCCCHHHHHhCCEEEecCCHHHH--HHHHHH
Confidence 99999999999999996 555555 45555555566666777766 555543
No 349
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.03 E-value=0.0017 Score=77.34 Aligned_cols=234 Identities=18% Similarity=0.290 Sum_probs=155.7
Q ss_pred EEEeecCCeEEEEeCCCCEEEEEeCC-CC--EEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEE
Q 001380 606 LAIDILNNRLFISDSNHNRIVVTDLD-GN--FIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALR 682 (1089)
Q Consensus 606 vavd~~~g~L~vsd~~~~~I~~~~~~-g~--~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~ 682 (1089)
+.+.+ +|+.+++-.....|..++.. ++ ......+ .-..-.++++.++|. ..++-.....|+
T Consensus 165 ~~fs~-~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~--------------h~~~v~~~~fs~d~~-~l~s~s~D~tir 228 (456)
T KOG0266|consen 165 VDFSP-DGRALAAASSDGLIRIWKLEGIKSNLLRELSG--------------HTRGVSDVAFSPDGS-YLLSGSDDKTLR 228 (456)
T ss_pred EEEcC-CCCeEEEccCCCcEEEeecccccchhhccccc--------------cccceeeeEECCCCc-EEEEecCCceEE
Confidence 45565 55555555555666666553 22 2222211 123458999999998 677777789999
Q ss_pred EEEC-CCC-eEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEE-EEeCCCcc
Q 001380 683 EIDF-VND-TVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTR-AFSGDGYE 759 (1089)
Q Consensus 683 ~~d~-~~g-~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~-~~~g~g~~ 759 (1089)
.+|. +.+ .++++.|.. .....++|+|.+ .++++....+.|+.||..++++. .+.+..
T Consensus 229 iwd~~~~~~~~~~l~gH~-----------------~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs-- 288 (456)
T KOG0266|consen 229 IWDLKDDGRNLKTLKGHS-----------------TYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKGHS-- 288 (456)
T ss_pred EeeccCCCeEEEEecCCC-----------------CceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeeeccC--
Confidence 9998 443 456665433 255899999999 88888888999999999886654 444321
Q ss_pred ccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCe---EEEecCCCCCCCCccccCCCCCccccccc
Q 001380 760 RNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGS---RLLAGGDPIFPDNLFKFGDRDGMGSEVLL 836 (1089)
Q Consensus 760 ~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~---~~~~g~~~~~~~~l~~~g~~dg~~~~~~l 836 (1089)
..-++++++++|+.|+.+ +..+.|+.++..++.. ..+.+.
T Consensus 289 -------------~~is~~~f~~d~~~l~s~-s~d~~i~vwd~~~~~~~~~~~~~~~----------------------- 331 (456)
T KOG0266|consen 289 -------------DGISGLAFSPDGNLLVSA-SYDGTIRVWDLETGSKLCLKLLSGA----------------------- 331 (456)
T ss_pred -------------CceEEEEECCCCCEEEEc-CCCccEEEEECCCCceeeeecccCC-----------------------
Confidence 245689999999555555 7799999999997763 233221
Q ss_pred cCc---eEEEEccCCcEEEEeCCCCEEEEEeCCCC-eEEEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCC
Q 001380 837 QHP---LGVYCAKNGQIYVADSYNHKIKKLDPASN-RVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNN 912 (1089)
Q Consensus 837 ~~P---~gva~~~~G~lyVaD~~n~~I~~~d~~~~-~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n 912 (1089)
..+ ..+.++++|...++-+.++.++.+|...+ .+.++.+.... ...........+|...++....
T Consensus 332 ~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~i~sg~~d 400 (456)
T KOG0266|consen 332 ENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNL-----------VRCIFSPTLSTGGKLIYSGSED 400 (456)
T ss_pred CCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCc-----------ceeEecccccCCCCeEEEEeCC
Confidence 123 56788899988888888888999887643 44455432110 0112222234567788888888
Q ss_pred CEEEEEeCCCC
Q 001380 913 NIIRYLDLNKE 923 (1089)
Q Consensus 913 ~~I~~~~~~~~ 923 (1089)
+.|..+++.+.
T Consensus 401 ~~v~~~~~~s~ 411 (456)
T KOG0266|consen 401 GSVYVWDSSSG 411 (456)
T ss_pred ceEEEEeCCcc
Confidence 99999999875
No 350
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=98.03 E-value=0.00036 Score=78.98 Aligned_cols=231 Identities=17% Similarity=0.200 Sum_probs=127.1
Q ss_pred CCCCCCCCCceEEEeecCCeEEEEeCCCCEEEEEeCCCC-EEE---EEecCCCCCCCCCCCCccccCCcceeEEeeCCCE
Q 001380 595 LFTSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGN-FIV---QIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNL 670 (1089)
Q Consensus 595 ~~~~~l~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~g~-~~~---~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~ 670 (1089)
.+++.+..|.+++.- .+.+|++.. -.+.+++ .|. .+. .|-.. .+ .+ ..++-..|+++|+|+
T Consensus 125 ~fa~~~~~~~~~a~~--~~~~~~~n~--~~~~~~~-~g~~~l~~~~~i~~~-lP---~~-----~~H~g~~l~f~pDG~- 189 (399)
T COG2133 125 DFAQGRLVYFGISEP--GGGLYVANR--VAIGRLP-GGDTKLSEPKVIFRG-IP---KG-----GHHFGGRLVFGPDGK- 189 (399)
T ss_pred cccccceeeeEEEee--cCCceEEEE--EEEEEcC-CCccccccccEEeec-CC---CC-----CCcCcccEEECCCCc-
Confidence 457788999999885 677888875 3455555 231 111 11110 11 00 123457899999995
Q ss_pred EEEEECCC-------------CEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCC
Q 001380 671 LYVADTEN-------------HALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQ 737 (1089)
Q Consensus 671 lyVaD~~n-------------~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~ 737 (1089)
|||+=..+ ++|.+++.++.......+.+ ...-..-+.+|.|++|+|..+.||+++.+.
T Consensus 190 Lyvs~G~~~~~~~aq~~~~~~Gk~~r~~~a~~~~~d~p~~~---------~~i~s~G~RN~qGl~w~P~tg~Lw~~e~g~ 260 (399)
T COG2133 190 LYVTTGSNGDPALAQDNVSLAGKVLRIDRAGIIPADNPFPN---------SEIWSYGHRNPQGLAWHPVTGALWTTEHGP 260 (399)
T ss_pred EEEEeCCCCCcccccCccccccceeeeccCcccccCCCCCC---------cceEEeccCCccceeecCCCCcEEEEecCC
Confidence 99984433 23333332221111111101 111123367999999999988999999887
Q ss_pred cEEEEEECC----CCe-----EEEEeCCCccccC--CCCCC--------CCccccCCceEEEcCCC------CEEEEEeC
Q 001380 738 HQIWEHSTV----DGV-----TRAFSGDGYERNL--NGSSS--------LNTSFAQPSGISLSPDF------MEIYVADS 792 (1089)
Q Consensus 738 ~~I~~~~~~----~g~-----~~~~~g~g~~~~~--~g~~~--------~~~~~~~P~glav~~~g------~~lyvad~ 792 (1089)
..+.--|.. .|. ...+ |....... .+... .-+.-.-|+||++..-. +.+||+.-
T Consensus 261 d~~~~~Deln~i~~G~nYGWP~~~~-G~~~~g~~~~~~~~~~~~~~p~~~~~~h~ApsGmaFy~G~~fP~~r~~lfV~~h 339 (399)
T COG2133 261 DALRGPDELNSIRPGKNYGWPYAYF-GQNYDGRAIPDGTVVAGAIQPVYTWAPHIAPSGMAFYTGDLFPAYRGDLFVGAH 339 (399)
T ss_pred CcccCcccccccccCCccCCceecc-CcccCccccCCCcccccccCCceeeccccccceeEEecCCcCccccCcEEEEee
Confidence 544211111 111 1111 11111110 11110 00111236899998421 48999998
Q ss_pred CCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccCCcEEEEeCC-CCEEEEEeCCC
Q 001380 793 ESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSY-NHKIKKLDPAS 867 (1089)
Q Consensus 793 ~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~lyVaD~~-n~~I~~~d~~~ 867 (1089)
.+-.+.+++++++...++.+ |-.++. -..|.+|++.+||.|||+|.. +++|.|+..++
T Consensus 340 gsw~~~~~~~~g~~~~~~~~---------fl~~d~--------~gR~~dV~v~~DGallv~~D~~~g~i~Rv~~~~ 398 (399)
T COG2133 340 GSWPVLRLRPDGNYKVVLTG---------FLSGDL--------GGRPRDVAVAPDGALLVLTDQGDGRILRVSYAG 398 (399)
T ss_pred cceeEEEeccCCCcceEEEE---------EEecCC--------CCcccceEECCCCeEEEeecCCCCeEEEecCCC
Confidence 88778888887653322221 011111 146999999999999999877 77999997653
No 351
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=98.01 E-value=0.0036 Score=65.61 Aligned_cols=245 Identities=15% Similarity=0.213 Sum_probs=162.1
Q ss_pred CCCCCceEEEeecCCeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECC
Q 001380 599 PLKFPGKLAIDILNNRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTE 677 (1089)
Q Consensus 599 ~l~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~ 677 (1089)
.-.+-.++++.+ +|+.+++-+-.+.+..+|.. |+..+++-+.. ....+++++++.. -.|+...
T Consensus 62 HsH~v~dv~~s~-dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~--------------~dVlsva~s~dn~-qivSGSr 125 (315)
T KOG0279|consen 62 HSHFVSDVVLSS-DGNFALSASWDGTLRLWDLATGESTRRFVGHT--------------KDVLSVAFSTDNR-QIVSGSR 125 (315)
T ss_pred cceEecceEEcc-CCceEEeccccceEEEEEecCCcEEEEEEecC--------------CceEEEEecCCCc-eeecCCC
Confidence 345667888886 88999999999999999998 56666666552 2458999999877 6888888
Q ss_pred CCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECC-CcEEEEEECCCCeEE-EEeC
Q 001380 678 NHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAG-QHQIWEHSTVDGVTR-AFSG 755 (1089)
Q Consensus 678 n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~-~~~I~~~~~~~g~~~-~~~g 755 (1089)
...|..++..++-.-++...+. -.+-..+.|+|.....+|..++ ...|..||+.+-++. .+.|
T Consensus 126 DkTiklwnt~g~ck~t~~~~~~---------------~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~g 190 (315)
T KOG0279|consen 126 DKTIKLWNTLGVCKYTIHEDSH---------------REWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIG 190 (315)
T ss_pred cceeeeeeecccEEEEEecCCC---------------cCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhcccc
Confidence 8999999988888777775442 1267789999987566666555 566778888765543 2333
Q ss_pred CCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCcccccc
Q 001380 756 DGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVL 835 (1089)
Q Consensus 756 ~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~ 835 (1089)
.. ..-+-++++||| .+...-...+.++.++++.+.- ++.++.
T Consensus 191 h~---------------~~v~t~~vSpDG-slcasGgkdg~~~LwdL~~~k~-------------lysl~a--------- 232 (315)
T KOG0279|consen 191 HS---------------GYVNTVTVSPDG-SLCASGGKDGEAMLWDLNEGKN-------------LYSLEA--------- 232 (315)
T ss_pred cc---------------ccEEEEEECCCC-CEEecCCCCceEEEEEccCCce-------------eEeccC---------
Confidence 11 134578999999 8888877888899998875432 233332
Q ss_pred ccCceEEEEccCCcEEEEeCCCCEEEEEeCCCCeEE-EEeccCCCCCCCCcccccccCCCceEEE--ccCCcEEEEECCC
Q 001380 836 LQHPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVS-TLAGIGKAGFKDGAALAAQLSEPAGIIE--AQNGNLFIADTNN 912 (1089)
Q Consensus 836 l~~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~v~-t~~g~g~~g~~~g~~~~~~l~~P~gi~v--d~~G~lyVad~~n 912 (1089)
++.-.++++.|+.. +.+-.....|+.+|.+++.+- ++.-.+. | + ...-..|.++.. ..+|.-+++....
T Consensus 233 ~~~v~sl~fspnry-wL~~at~~sIkIwdl~~~~~v~~l~~d~~-g----~--s~~~~~~~clslaws~dG~tLf~g~td 304 (315)
T KOG0279|consen 233 FDIVNSLCFSPNRY-WLCAATATSIKIWDLESKAVVEELKLDGI-G----P--SSKAGDPICLSLAWSADGQTLFAGYTD 304 (315)
T ss_pred CCeEeeEEecCCce-eEeeccCCceEEEeccchhhhhhcccccc-c----c--ccccCCcEEEEEEEcCCCcEEEeeecC
Confidence 23456788988754 444444456999988776542 2221110 0 0 113344666544 5578655555556
Q ss_pred CEEEEEeC
Q 001380 913 NIIRYLDL 920 (1089)
Q Consensus 913 ~~I~~~~~ 920 (1089)
+.|+....
T Consensus 305 ~~irv~qv 312 (315)
T KOG0279|consen 305 NVIRVWQV 312 (315)
T ss_pred CcEEEEEe
Confidence 66666543
No 352
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=98.01 E-value=0.00013 Score=78.20 Aligned_cols=71 Identities=15% Similarity=0.173 Sum_probs=49.5
Q ss_pred cCCChHhHHHHHHHCCCCC---CCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEE
Q 001380 188 SSADRIKVDANLAAAGLPV---SMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCI 263 (1089)
Q Consensus 188 Sn~~~~~~~~~l~~~gl~~---~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i 263 (1089)
++...+.+...+++.++.. .++..|.. .+-.|...++.+++++|++++++++|||+.||+.|.+.+|...+
T Consensus 146 ~~~~~~~~~~~l~~~~~~~~~~~~~~ei~~-----~~~~Kg~al~~l~~~lgi~~~~vi~~GD~~NDi~ml~~ag~~va 219 (221)
T TIGR02463 146 SDSRMPRFTALLADLGLAIVQGNRFSHVLG-----ASSSKGKAANWLKATYNQPDVKTLGLGDGPNDLPLLEVADYAVV 219 (221)
T ss_pred chhHHHHHHHHHHHcCCeEEecCCeeEEec-----CCCCHHHHHHHHHHHhCCCCCcEEEECCCHHHHHHHHhCCceEE
Confidence 4444455566676655530 12222222 23345667899999999999999999999999999999996543
No 353
>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=97.99 E-value=0.0003 Score=91.03 Aligned_cols=200 Identities=22% Similarity=0.340 Sum_probs=151.6
Q ss_pred CCCceEEEeecCCeEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCE
Q 001380 601 KFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHA 680 (1089)
Q Consensus 601 ~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~ 680 (1089)
..+..+.++..++.+|.+|.....|.....++.....+-..| ...|.|+++|..++.+|++|.++..
T Consensus 437 ~~~~~~d~d~~~~~i~~~d~~~~~i~~~~~~~~~~~~~~~~g-------------~~~~~~lavD~~~~~~y~tDe~~~~ 503 (877)
T KOG1215|consen 437 KNAVALDFDVLNNRIYWADLSDEKICRASQDGSSECELCGDG-------------LCIPEGLAVDWIGDNIYWTDEGNCL 503 (877)
T ss_pred ccceEEEEEecCCEEEEEeccCCeEeeeccCCCccceEeccC-------------ccccCcEEEEeccCCceecccCCce
Confidence 556666777778899999999999999988877665532221 3478999999988889999999999
Q ss_pred EEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECC-CcEEEEEECCCCeEEEEeCCCcc
Q 001380 681 LREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAG-QHQIWEHSTVDGVTRAFSGDGYE 759 (1089)
Q Consensus 681 I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~-~~~I~~~~~~~g~~~~~~g~g~~ 759 (1089)
|.+.++++....++.... +..|..++++|..+.+|+++++ ..+|.+-..++.....+..
T Consensus 504 i~v~~~~g~~~~vl~~~~----------------l~~~r~~~v~p~~g~~~wtd~~~~~~i~ra~~dg~~~~~l~~---- 563 (877)
T KOG1215|consen 504 IEVADLDGSSRKVLVSKD----------------LDLPRSIAVDPEKGLMFWTDWGQPPRIERASLDGSERAVLVT---- 563 (877)
T ss_pred eEEEEccCCceeEEEecC----------------CCCccceeeccccCeeEEecCCCCchhhhhcCCCCCceEEEe----
Confidence 999998777655665322 3589999999999999999998 4456555544444444432
Q ss_pred ccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCC-eEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccC
Q 001380 760 RNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESS-SIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQH 838 (1089)
Q Consensus 760 ~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~-~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~ 838 (1089)
.+..+|+|++++...+.+|++|.... .|...+.++...+ +. ....+.|
T Consensus 564 ----------~~~~~p~glt~d~~~~~~yw~d~~~~~~i~~~~~~g~~r~-~~--------------------~~~~~~~ 612 (877)
T KOG1215|consen 564 ----------NGILWPNGLTIDYETDRLYWADAKLDYTIESANMDGQNRR-VV--------------------DSEDLPH 612 (877)
T ss_pred ----------CCccCCCcceEEeecceeEEEcccCCcceeeeecCCCceE-Ee--------------------ccccCCC
Confidence 22568999999988889999999988 7888888755443 21 1123679
Q ss_pred ceEEEEccCCcEEEEeCCCCEEEEEeC
Q 001380 839 PLGVYCAKNGQIYVADSYNHKIKKLDP 865 (1089)
Q Consensus 839 P~gva~~~~G~lyVaD~~n~~I~~~d~ 865 (1089)
|.++++- .+++|+.|..++.+.+...
T Consensus 613 p~~~~~~-~~~iyw~d~~~~~~~~~~~ 638 (877)
T KOG1215|consen 613 PFGLSVF-EDYIYWTDWSNRAISRAEK 638 (877)
T ss_pred ceEEEEe-cceeEEeeccccceEeeec
Confidence 9999986 5699999999887666554
No 354
>PF13728 TraF: F plasmid transfer operon protein
Probab=97.98 E-value=2.3e-05 Score=82.51 Aligned_cols=96 Identities=27% Similarity=0.360 Sum_probs=74.9
Q ss_pred cccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCc-cceeecCChhH
Q 001380 449 RDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGIS-HPVVNDGDMNL 527 (1089)
Q Consensus 449 ~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~d~~~~l 527 (1089)
..+.+++-|+.|+.+.|+.|..+.|.|+.+.++| |+.|+.||++.. +++ ||... .+..+
T Consensus 116 ~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~y---g~~v~~vs~DG~----------------~~~~fp~~~-~~~g~ 175 (215)
T PF13728_consen 116 KQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKY---GFSVIPVSLDGR----------------PIPSFPNPR-PDPGQ 175 (215)
T ss_pred HHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHh---CCEEEEEecCCC----------------CCcCCCCCC-CCHHH
Confidence 5667889999999999999999999999999997 689999987311 111 22221 25679
Q ss_pred HHHhCCCceeEEEEECCCC-cEEEEecCCCchhhHHHH
Q 001380 528 WRELGVNSWPTFAVVGPNG-KLLAQLAGEGHRKDLDDL 564 (1089)
Q Consensus 528 ~~~~~v~~~Pt~~lid~~G-~i~~~~~G~~~~~~l~~~ 564 (1089)
++.+||..+|++||+++++ ++.-...|..+.++|.+-
T Consensus 176 ~~~l~v~~~Pal~Lv~~~~~~~~pv~~G~~s~~~L~~r 213 (215)
T PF13728_consen 176 AKRLGVKVTPALFLVNPNTKKWYPVSQGFMSLDELEDR 213 (215)
T ss_pred HHHcCCCcCCEEEEEECCCCeEEEEeeecCCHHHHHHh
Confidence 9999999999999999988 444457788887777553
No 355
>smart00594 UAS UAS domain.
Probab=97.97 E-value=2.8e-05 Score=74.54 Aligned_cols=90 Identities=13% Similarity=0.164 Sum_probs=65.6
Q ss_pred ccCCCEEEEEEecCCCcchhhhhhhHH---HHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChh
Q 001380 450 DLKGKVVVLDFWTYCCINCMHVLPDLE---FLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMN 526 (1089)
Q Consensus 450 ~~~gk~vll~Fwa~wC~~C~~~~p~l~---~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~ 526 (1089)
.-.+|.++|+|++.||++|.......- ++.+.+. +.+.++.+.+. . ....+
T Consensus 24 k~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~-~~fv~~~~dv~---~----------------------~eg~~ 77 (122)
T smart00594 24 SRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIR-ENFIFWQVDVD---T----------------------SEGQR 77 (122)
T ss_pred HhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHH-cCEEEEEecCC---C----------------------hhHHH
Confidence 346899999999999999998755431 2333332 35777777431 1 12357
Q ss_pred HHHHhCCCceeEEEEECCCC-----cEEEEecCCCchhhHHHHH
Q 001380 527 LWRELGVNSWPTFAVVGPNG-----KLLAQLAGEGHRKDLDDLV 565 (1089)
Q Consensus 527 l~~~~~v~~~Pt~~lid~~G-----~i~~~~~G~~~~~~l~~~l 565 (1089)
+++.|++.++|+++++|++| .++.+..|..+.+++...+
T Consensus 78 l~~~~~~~~~P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 78 VSQFYKLDSFPYVAIVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred HHHhcCcCCCCEEEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 88899999999999999998 4677788988888776654
No 356
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=97.96 E-value=0.0036 Score=73.95 Aligned_cols=188 Identities=17% Similarity=0.205 Sum_probs=114.5
Q ss_pred CCEEEEEECC---CCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECC--CcEEEE
Q 001380 668 KNLLYVADTE---NHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAG--QHQIWE 742 (1089)
Q Consensus 668 g~~lyVaD~~---n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~--~~~I~~ 742 (1089)
+..+|+.... ...|+..|.+++..+.+...+. .-...+++|+|+.|+++... .++|+.
T Consensus 156 ~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~-----------------~~~~p~~Spdg~~la~~~~~~~~~~i~v 218 (417)
T TIGR02800 156 TRIAYVSKSGKSRRYELQVADYDGANPQTITRSRE-----------------PILSPAWSPDGQKLAYVSFESGKPEIYV 218 (417)
T ss_pred CEEEEEEEeCCCCcceEEEEcCCCCCCEEeecCCC-----------------ceecccCCCCCCEEEEEEcCCCCcEEEE
Confidence 3456666542 3467777776666666543221 12345689999888877644 368999
Q ss_pred EECCCCeEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCC--CCeEEEEEcCCCCeEEEecCCCCCCCC
Q 001380 743 HSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSE--SSSIRALNLKTGGSRLLAGGDPIFPDN 820 (1089)
Q Consensus 743 ~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~--~~~I~~~~~~~~~~~~~~g~~~~~~~~ 820 (1089)
++..++....+.... .....+++++||+.|+++... +..|+.++..++....+....
T Consensus 219 ~d~~~g~~~~~~~~~---------------~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~------ 277 (417)
T TIGR02800 219 QDLATGQREKVASFP---------------GMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGP------ 277 (417)
T ss_pred EECCCCCEEEeecCC---------------CCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCCC------
Confidence 999888666554211 012347899999888876543 346899998876655442210
Q ss_pred ccccCCCCCccccccccCceEEEEccCCc-EE-EEeC-CCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceE
Q 001380 821 LFKFGDRDGMGSEVLLQHPLGVYCAKNGQ-IY-VADS-YNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGI 897 (1089)
Q Consensus 821 l~~~g~~dg~~~~~~l~~P~gva~~~~G~-ly-VaD~-~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi 897 (1089)
+ .....+++++|+ |+ +++. +...|+.+|..++....+...+ .....+
T Consensus 278 --------~--------~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~--------------~~~~~~ 327 (417)
T TIGR02800 278 --------G--------IDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRG--------------GYNASP 327 (417)
T ss_pred --------C--------CCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCC--------------CCccCe
Confidence 0 011235677885 54 3443 3448999998887776665321 123456
Q ss_pred EEccCCc-EEEEECCC--CEEEEEeCCCC
Q 001380 898 IEAQNGN-LFIADTNN--NIIRYLDLNKE 923 (1089)
Q Consensus 898 ~vd~~G~-lyVad~~n--~~I~~~~~~~~ 923 (1089)
++.++|+ |+++...+ .+|..+++.+.
T Consensus 328 ~~spdg~~i~~~~~~~~~~~i~~~d~~~~ 356 (417)
T TIGR02800 328 SWSPDGDLIAFVHREGGGFNIAVMDLDGG 356 (417)
T ss_pred EECCCCCEEEEEEccCCceEEEEEeCCCC
Confidence 7788776 55554432 47888888775
No 357
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=97.96 E-value=0.00012 Score=76.10 Aligned_cols=140 Identities=21% Similarity=0.303 Sum_probs=98.2
Q ss_pred ccCCCCCCCCCCccccCCCCCce-eeccccc-C-CCEEEEEEecCCCcchhhhhhhHHHHHHHcCCC-CEEEEEEeC---
Q 001380 422 ENRKTTPIVPEFPAKLDWLNTAP-LQFRRDL-K-GKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDM-PFTVVGVHS--- 494 (1089)
Q Consensus 422 ~~~~~g~~~P~f~~~~~~~~g~~-~~l~~~~-~-gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~-~v~vi~v~~--- 494 (1089)
.....|.+||+.+. ..++|+. .++ -|+ + ++|+||+|-+-.||+=+.-++.++++.++|++. ++.+|.|-=
T Consensus 71 ~~a~~G~~APns~v--v~l~g~~~~~i-ldf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI~EAHp 147 (237)
T PF00837_consen 71 KEAKLGGPAPNSPV--VTLDGQRSCRI-LDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYIEEAHP 147 (237)
T ss_pred cceeCCCCCCCCce--EeeCCCcceeH-HHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhHhhhCc
Confidence 36789999999995 4568887 777 666 3 589999999988999999999999999999984 676666521
Q ss_pred -------------CCCCChhcHHHHHHHHHHcCCccceeecC-ChhHHHHhCCCceeE-EEEECCCCcEEEE-ecCCC--
Q 001380 495 -------------AKFDNEKDLEAIRNAVLRYGISHPVVNDG-DMNLWRELGVNSWPT-FAVVGPNGKLLAQ-LAGEG-- 556 (1089)
Q Consensus 495 -------------~~~~~~~~~~~~~~~~~~~~~~~~v~~d~-~~~l~~~~~v~~~Pt-~~lid~~G~i~~~-~~G~~-- 556 (1089)
.+-..-+++-.+.+.+.++....|++.|. ++...+.||. +|. +||| .+|+|+++ -.|+.
T Consensus 148 sDgW~~~~~~~~i~qh~sledR~~aA~~l~~~~~~~pi~vD~mdN~~~~~YgA--~PeRlyIi-~~gkv~Y~Gg~GP~~y 224 (237)
T PF00837_consen 148 SDGWAFGNNPYEIPQHRSLEDRLRAAKLLKEEFPQCPIVVDTMDNNFNKAYGA--LPERLYII-QDGKVVYKGGPGPFGY 224 (237)
T ss_pred CCCccCCCCceeecCCCCHHHHHHHHHHHHhhCCCCCEEEEccCCHHHHHhCC--CcceEEEE-ECCEEEEeCCCCCCcC
Confidence 11111123333344444444678887775 7788899986 454 4555 69999988 34443
Q ss_pred chhhHHHHHHH
Q 001380 557 HRKDLDDLVEA 567 (1089)
Q Consensus 557 ~~~~l~~~l~~ 567 (1089)
+.++++++|++
T Consensus 225 ~~~e~r~~L~~ 235 (237)
T PF00837_consen 225 SPEELREWLEK 235 (237)
T ss_pred CHHHHHHHHHh
Confidence 45666666553
No 358
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.93 E-value=0.0033 Score=73.74 Aligned_cols=198 Identities=13% Similarity=0.060 Sum_probs=122.5
Q ss_pred EEEeecCCe-EEEEeCC--CCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEEC--CCCE
Q 001380 606 LAIDILNNR-LFISDSN--HNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADT--ENHA 680 (1089)
Q Consensus 606 vavd~~~g~-L~vsd~~--~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~--~n~~ 680 (1089)
..++|++++ +|++... ...|++++..+...+.+... . | ......++|+|+.|+++-. ++..
T Consensus 193 p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~-~-g------------~~~~~~~SPDG~~la~~~~~~g~~~ 258 (419)
T PRK04043 193 PKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASS-Q-G------------MLVVSDVSKDGSKLLLTMAPKGQPD 258 (419)
T ss_pred EEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecC-C-C------------cEEeeEECCCCCEEEEEEccCCCcE
Confidence 456775554 6654433 56899999875554444322 1 0 1123457889976766533 4578
Q ss_pred EEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEEC--CCcEEEEEECCCCeEEEEeCCCc
Q 001380 681 LREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMA--GQHQIWEHSTVDGVTRAFSGDGY 758 (1089)
Q Consensus 681 I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~--~~~~I~~~~~~~g~~~~~~g~g~ 758 (1089)
|+.++++++..+.+.... +.+ ..-.|+|+|+.||++.. +..+|+.+|..+|..+.+.-.|
T Consensus 259 Iy~~dl~~g~~~~LT~~~--~~d---------------~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g- 320 (419)
T PRK04043 259 IYLYDTNTKTLTQITNYP--GID---------------VNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHG- 320 (419)
T ss_pred EEEEECCCCcEEEcccCC--Ccc---------------CccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCC-
Confidence 999999888877764211 000 12259999988888753 3558999999988876554211
Q ss_pred cccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCC--------CeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCc
Q 001380 759 ERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSES--------SSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGM 830 (1089)
Q Consensus 759 ~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~--------~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~ 830 (1089)
. .. .+++|||+.|.++.... ..|+.++++++..+.+..+ + .
T Consensus 321 -----------~--~~---~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~-----------~-~--- 369 (419)
T PRK04043 321 -----------K--NN---SSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTAN-----------G-V--- 369 (419)
T ss_pred -----------C--cC---ceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCC-----------C-C---
Confidence 0 11 27899998776655432 4789999888776655321 0 0
Q ss_pred cccccccCceEEEEccCCc-EEEE-eCC-CCEEEEEeCCCCeEEEEe
Q 001380 831 GSEVLLQHPLGVYCAKNGQ-IYVA-DSY-NHKIKKLDPASNRVSTLA 874 (1089)
Q Consensus 831 ~~~~~l~~P~gva~~~~G~-lyVa-D~~-n~~I~~~d~~~~~v~t~~ 874 (1089)
.. ...++|||+ |+++ +.. ...|..++.+++....+.
T Consensus 370 -----~~---~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~~l~ 408 (419)
T PRK04043 370 -----NQ---FPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSFLFP 408 (419)
T ss_pred -----cC---CeEECCCCCEEEEEEccCCcEEEEEEecCCCeeEEee
Confidence 01 146789995 5444 333 335888898877666664
No 359
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=97.91 E-value=4.5e-05 Score=81.57 Aligned_cols=104 Identities=18% Similarity=0.256 Sum_probs=82.6
Q ss_pred cccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCc-cceeecCChhH
Q 001380 449 RDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGIS-HPVVNDGDMNL 527 (1089)
Q Consensus 449 ~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~d~~~~l 527 (1089)
..+..++-|+.||.+-|+.|.++.|.|+.+.++| |+.++.||++.. +++ ||... .+..+
T Consensus 146 ~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~y---gi~v~~VS~DG~----------------~~p~fp~~~-~d~gq 205 (256)
T TIGR02739 146 QQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEY---GISVIPISVDGT----------------LIPGLPNSR-SDSGQ 205 (256)
T ss_pred HHHHhceeEEEEECCCCchhHHHHHHHHHHHHHh---CCeEEEEecCCC----------------CCCCCCCcc-CChHH
Confidence 5667789999999999999999999999999997 599999987421 111 33221 25678
Q ss_pred HHHhCCCceeEEEEECCCC-cEEEEecCCCchhhHHHHHHHHHHHh
Q 001380 528 WRELGVNSWPTFAVVGPNG-KLLAQLAGEGHRKDLDDLVEAALLFY 572 (1089)
Q Consensus 528 ~~~~~v~~~Pt~~lid~~G-~i~~~~~G~~~~~~l~~~l~~~l~~~ 572 (1089)
++.+||..+|++||++++. ++.-...|..+.++|.+-|..++..+
T Consensus 206 a~~l~v~~~Pal~Lv~~~t~~~~pv~~G~iS~deL~~Ri~~v~~~f 251 (256)
T TIGR02739 206 AQHLGVKYFPALYLVNPKSQKMSPLAYGFISQDELKERILNVLTQF 251 (256)
T ss_pred HHhcCCccCceEEEEECCCCcEEEEeeccCCHHHHHHHHHHHHhcc
Confidence 9999999999999999994 44445789999999988888777665
No 360
>PTZ00421 coronin; Provisional
Probab=97.90 E-value=0.015 Score=69.49 Aligned_cols=198 Identities=15% Similarity=0.135 Sum_probs=121.0
Q ss_pred CcceeEEee-CCCEEEEEECCCCEEEEEECCCCe--------EEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCC
Q 001380 658 RPQGLAYNA-KKNLLYVADTENHALREIDFVNDT--------VRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINE 728 (1089)
Q Consensus 658 ~P~gla~d~-~g~~lyVaD~~n~~I~~~d~~~g~--------v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~ 728 (1089)
...+++++| +++ ++++-..++.|+.+|..++. +.++.+. -.....|+|+|.++
T Consensus 77 ~V~~v~fsP~d~~-~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH-----------------~~~V~~l~f~P~~~ 138 (493)
T PTZ00421 77 PIIDVAFNPFDPQ-KLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGH-----------------TKKVGIVSFHPSAM 138 (493)
T ss_pred CEEEEEEcCCCCC-EEEEEeCCCEEEEEecCCCccccccCcceEEecCC-----------------CCcEEEEEeCcCCC
Confidence 457899998 677 55665678899999976542 1222211 12457899999876
Q ss_pred EEEEEECCCcEEEEEECCCCeEE-EEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCe
Q 001380 729 KVYIAMAGQHQIWEHSTVDGVTR-AFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGS 807 (1089)
Q Consensus 729 ~lyvad~~~~~I~~~~~~~g~~~-~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~ 807 (1089)
.++++....+.|..||..++... .+.+. -....+|+++++| .++++-+..+.|+.+++.++..
T Consensus 139 ~iLaSgs~DgtVrIWDl~tg~~~~~l~~h---------------~~~V~sla~spdG-~lLatgs~Dg~IrIwD~rsg~~ 202 (493)
T PTZ00421 139 NVLASAGADMVVNVWDVERGKAVEVIKCH---------------SDQITSLEWNLDG-SLLCTTSKDKKLNIIDPRDGTI 202 (493)
T ss_pred CEEEEEeCCCEEEEEECCCCeEEEEEcCC---------------CCceEEEEEECCC-CEEEEecCCCEEEEEECCCCcE
Confidence 67777667889999998877543 23211 1235689999998 6777777889999999986654
Q ss_pred E-EEecCCCCCCCCccccCCCCCccccccccCceEEEEccCCcEEEEe----CCCCEEEEEeCCCCe--EEEEeccCCCC
Q 001380 808 R-LLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVAD----SYNHKIKKLDPASNR--VSTLAGIGKAG 880 (1089)
Q Consensus 808 ~-~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~lyVaD----~~n~~I~~~d~~~~~--v~t~~g~g~~g 880 (1089)
. .+.+.. .. ....+.+.+++..+++- ...+.|+.+|..+.. +.+....
T Consensus 203 v~tl~~H~-------------~~--------~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d---- 257 (493)
T PTZ00421 203 VSSVEAHA-------------SA--------KSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLD---- 257 (493)
T ss_pred EEEEecCC-------------CC--------cceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccC----
Confidence 2 221110 00 11234455555444432 235789999875322 2222110
Q ss_pred CCCCcccccccCCCceEEEccCCc-EEEEECCCCEEEEEeCCCC
Q 001380 881 FKDGAALAAQLSEPAGIIEAQNGN-LFIADTNNNIIRYLDLNKE 923 (1089)
Q Consensus 881 ~~~g~~~~~~l~~P~gi~vd~~G~-lyVad~~n~~I~~~~~~~~ 923 (1089)
.-....-..++++++ ||++..+.+.|+.+++..+
T Consensus 258 ---------~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 258 ---------QSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE 292 (493)
T ss_pred ---------CCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence 000111234677776 5666667899999999876
No 361
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=0.011 Score=63.16 Aligned_cols=205 Identities=19% Similarity=0.227 Sum_probs=133.6
Q ss_pred CcceeEEeeCCCEEEEEECCCCEEEEEECCCCe-EEEEecCCCCCCCCCCCCcccccccCCceeEEE-ecCCCEEEEEEC
Q 001380 658 RPQGLAYNAKKNLLYVADTENHALREIDFVNDT-VRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCY-KPINEKVYIAMA 735 (1089)
Q Consensus 658 ~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~-v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~-~~~g~~lyvad~ 735 (1089)
.+..|.++.+|. ..++-+.+..|+.+|..+|. +.++... ..| +.-+.+ ++....++-+..
T Consensus 16 ~i~sl~fs~~G~-~litss~dDsl~LYd~~~g~~~~ti~sk-kyG----------------~~~~~Fth~~~~~i~sStk 77 (311)
T KOG1446|consen 16 KINSLDFSDDGL-LLITSSEDDSLRLYDSLSGKQVKTINSK-KYG----------------VDLACFTHHSNTVIHSSTK 77 (311)
T ss_pred ceeEEEecCCCC-EEEEecCCCeEEEEEcCCCceeeEeecc-ccc----------------ccEEEEecCCceEEEccCC
Confidence 578999999999 45555667899999987765 5555532 111 222333 233334444444
Q ss_pred CCcEEEEEECCCCe-EEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCC
Q 001380 736 GQHQIWEHSTVDGV-TRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGD 814 (1089)
Q Consensus 736 ~~~~I~~~~~~~g~-~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~ 814 (1089)
.+..|+-++..+.. ++.|.|.. ..-+.|+++|-+ ..|++-+...+||.+|+....-..+
T Consensus 78 ~d~tIryLsl~dNkylRYF~GH~---------------~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~cqg~---- 137 (311)
T KOG1446|consen 78 EDDTIRYLSLHDNKYLRYFPGHK---------------KRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKCQGL---- 137 (311)
T ss_pred CCCceEEEEeecCceEEEcCCCC---------------ceEEEEEecCCC-CeEEecccCCeEEeeEecCCCCceE----
Confidence 56778888877654 55666543 245689999987 9999999999999999873222111
Q ss_pred CCCCCCccccCCCCCccccccccCceEEEEccCCcEEEEeCCCCEEEEEeCC---CCeEEEEeccCCCCCCCCccccccc
Q 001380 815 PIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPA---SNRVSTLAGIGKAGFKDGAALAAQL 891 (1089)
Q Consensus 815 ~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~lyVaD~~n~~I~~~d~~---~~~v~t~~g~g~~g~~~g~~~~~~l 891 (1089)
..++.+--.|+||+|.++.+-..+..|+.+|.. .|--+++.-. ....
T Consensus 138 -------------------l~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~-----------~~~~ 187 (311)
T KOG1446|consen 138 -------------------LNLSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSIT-----------DNDE 187 (311)
T ss_pred -------------------EecCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccC-----------CCCc
Confidence 113455567999999999988888899999863 2222333211 1234
Q ss_pred CCCceEEEccCCcEEEEECCCCEEEEEeCCCCCceEEEEe
Q 001380 892 SEPAGIIEAQNGNLFIADTNNNIIRYLDLNKEEPELQTLE 931 (1089)
Q Consensus 892 ~~P~gi~vd~~G~lyVad~~n~~I~~~~~~~~~~~~~~l~ 931 (1089)
.+=..|.+.++|...+..++++.+..++--.++ .+.++.
T Consensus 188 ~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~-~~~tfs 226 (311)
T KOG1446|consen 188 AEWTDLEFSPDGKSILLSTNASFIYLLDAFDGT-VKSTFS 226 (311)
T ss_pred cceeeeEEcCCCCEEEEEeCCCcEEEEEccCCc-EeeeEe
Confidence 556789999999866666677878888766552 334444
No 362
>PLN00181 protein SPA1-RELATED; Provisional
Probab=97.89 E-value=0.01 Score=76.24 Aligned_cols=243 Identities=10% Similarity=0.113 Sum_probs=146.6
Q ss_pred CceEEEeecCCeEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeC-CCEEEEEECCCCEE
Q 001380 603 PGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAK-KNLLYVADTENHAL 681 (1089)
Q Consensus 603 P~~vavd~~~g~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~-g~~lyVaD~~n~~I 681 (1089)
-..+++++ +|.++++-...+.|.+|+............ .... .-..-....++++++. ++ ..++-..++.|
T Consensus 486 V~~i~fs~-dg~~latgg~D~~I~iwd~~~~~~~~~~~~-~~~~-----~~~~~~~v~~l~~~~~~~~-~las~~~Dg~v 557 (793)
T PLN00181 486 VCAIGFDR-DGEFFATAGVNKKIKIFECESIIKDGRDIH-YPVV-----ELASRSKLSGICWNSYIKS-QVASSNFEGVV 557 (793)
T ss_pred EEEEEECC-CCCEEEEEeCCCEEEEEECCcccccccccc-cceE-----EecccCceeeEEeccCCCC-EEEEEeCCCeE
Confidence 44678887 677777777788999998643210000000 0000 0000113467788764 45 44555568899
Q ss_pred EEEECCCCeE-EEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEE-EEeCCCcc
Q 001380 682 REIDFVNDTV-RTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTR-AFSGDGYE 759 (1089)
Q Consensus 682 ~~~d~~~g~v-~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~-~~~g~g~~ 759 (1089)
+.+|..++.. .++.+.. ..-+++++++.++.++++....+.|..||...+... .+...
T Consensus 558 ~lWd~~~~~~~~~~~~H~-----------------~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~--- 617 (793)
T PLN00181 558 QVWDVARSQLVTEMKEHE-----------------KRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK--- 617 (793)
T ss_pred EEEECCCCeEEEEecCCC-----------------CCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC---
Confidence 9999887653 3333211 246889999755577777777889999998766443 22210
Q ss_pred ccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCe--EEEecCCCCCCCCccccCCCCCcccccccc
Q 001380 760 RNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGS--RLLAGGDPIFPDNLFKFGDRDGMGSEVLLQ 837 (1089)
Q Consensus 760 ~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~--~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~ 837 (1089)
.....+.+.+..+.++++-+..+.|+.++...+.. ..+.+ +. .
T Consensus 618 -------------~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~-------------h~---------~ 662 (793)
T PLN00181 618 -------------ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIG-------------HS---------K 662 (793)
T ss_pred -------------CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecC-------------CC---------C
Confidence 12345666443336667777889999999865432 12211 11 0
Q ss_pred CceEEEEccCCcEEEEeCCCCEEEEEeCCCC-------eEEEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEEC
Q 001380 838 HPLGVYCAKNGQIYVADSYNHKIKKLDPASN-------RVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADT 910 (1089)
Q Consensus 838 ~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~-------~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~ 910 (1089)
.-..+.+. ++..+++-+..+.|+.+|...+ .+.++.+ .-+....++++++|.++++..
T Consensus 663 ~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~g--------------h~~~i~~v~~s~~~~~lasgs 727 (793)
T PLN00181 663 TVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMG--------------HTNVKNFVGLSVSDGYIATGS 727 (793)
T ss_pred CEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcC--------------CCCCeeEEEEcCCCCEEEEEe
Confidence 12355664 5667777777889999987532 2334432 123356688888888888888
Q ss_pred CCCEEEEEeCCCC
Q 001380 911 NNNIIRYLDLNKE 923 (1089)
Q Consensus 911 ~n~~I~~~~~~~~ 923 (1089)
.++.|.+++....
T Consensus 728 ~D~~v~iw~~~~~ 740 (793)
T PLN00181 728 ETNEVFVYHKAFP 740 (793)
T ss_pred CCCEEEEEECCCC
Confidence 8999999987654
No 363
>PLN00181 protein SPA1-RELATED; Provisional
Probab=97.87 E-value=0.0095 Score=76.56 Aligned_cols=252 Identities=10% Similarity=0.086 Sum_probs=146.1
Q ss_pred CceEEEeecCCeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEee-CCCEEEEEECCCCE
Q 001380 603 PGKLAIDILNNRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNA-KKNLLYVADTENHA 680 (1089)
Q Consensus 603 P~~vavd~~~g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~-~g~~lyVaD~~n~~ 680 (1089)
...+++++..+.++++-...+.|.+||.. ++.+..+.+. . ..-.++++++ +++ ++++-..++.
T Consensus 535 v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H-~-------------~~V~~l~~~p~~~~-~L~Sgs~Dg~ 599 (793)
T PLN00181 535 LSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEH-E-------------KRVWSIDYSSADPT-LLASGSDDGS 599 (793)
T ss_pred eeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCC-C-------------CCEEEEEEcCCCCC-EEEEEcCCCE
Confidence 34567776556666666678899999976 5555555332 1 1347889986 566 6666667889
Q ss_pred EEEEECCCCeE-EEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCe--EEEEeCCC
Q 001380 681 LREIDFVNDTV-RTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGV--TRAFSGDG 757 (1089)
Q Consensus 681 I~~~d~~~g~v-~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~--~~~~~g~g 757 (1089)
|+.+|..++.. .++.. . .....+.+.+..+.++++...++.|..||...+. +..+.+..
T Consensus 600 v~iWd~~~~~~~~~~~~-~-----------------~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~ 661 (793)
T PLN00181 600 VKLWSINQGVSIGTIKT-K-----------------ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHS 661 (793)
T ss_pred EEEEECCCCcEEEEEec-C-----------------CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCC
Confidence 99999876543 33321 0 1345677755444666666778899999987543 22332211
Q ss_pred ccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCcccccccc
Q 001380 758 YERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQ 837 (1089)
Q Consensus 758 ~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~ 837 (1089)
..-+.+.+. ++ ..+++-+..+.|+.++...+... . ....+..+... -.
T Consensus 662 ---------------~~V~~v~f~-~~-~~lvs~s~D~~ikiWd~~~~~~~-~------~~~~l~~~~gh--------~~ 709 (793)
T PLN00181 662 ---------------KTVSYVRFV-DS-STLVSSSTDNTLKLWDLSMSISG-I------NETPLHSFMGH--------TN 709 (793)
T ss_pred ---------------CCEEEEEEe-CC-CEEEEEECCCEEEEEeCCCCccc-c------CCcceEEEcCC--------CC
Confidence 123456665 44 44556667788999987632100 0 00001111100 12
Q ss_pred CceEEEEccCCcEEEEeCCCCEEEEEeCCCCeEE-EEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEE
Q 001380 838 HPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVS-TLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIR 916 (1089)
Q Consensus 838 ~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~v~-t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~ 916 (1089)
....++++++|.++++.+..+.|+.++....... ++. ....+...+......-..-..++.+++|+.+++-..++.|+
T Consensus 710 ~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~-~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~ 788 (793)
T PLN00181 710 VKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYK-FKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIK 788 (793)
T ss_pred CeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEe-cccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEE
Confidence 2456788888988888888999999987544221 111 11000000000000011235677888888888888888888
Q ss_pred EEeC
Q 001380 917 YLDL 920 (1089)
Q Consensus 917 ~~~~ 920 (1089)
++++
T Consensus 789 i~~~ 792 (793)
T PLN00181 789 ILEM 792 (793)
T ss_pred EEec
Confidence 8764
No 364
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=97.86 E-value=0.0092 Score=61.58 Aligned_cols=245 Identities=13% Similarity=0.122 Sum_probs=154.3
Q ss_pred CCceEEEeecCCeEEEEeCCCCEEEEEeCC-C--CEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCC
Q 001380 602 FPGKLAIDILNNRLFISDSNHNRIVVTDLD-G--NFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTEN 678 (1089)
Q Consensus 602 ~P~~vavd~~~g~L~vsd~~~~~I~~~~~~-g--~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n 678 (1089)
+...+.+.|..+.|.++ ++..|..+|.+ + +.+.++.+. -.+...+.|..+|+.+|- ..+.
T Consensus 42 qVNrLeiTpdk~~LAaa--~~qhvRlyD~~S~np~Pv~t~e~h--------------~kNVtaVgF~~dgrWMyT-gseD 104 (311)
T KOG0315|consen 42 QVNRLEITPDKKDLAAA--GNQHVRLYDLNSNNPNPVATFEGH--------------TKNVTAVGFQCDGRWMYT-GSED 104 (311)
T ss_pred ceeeEEEcCCcchhhhc--cCCeeEEEEccCCCCCceeEEecc--------------CCceEEEEEeecCeEEEe-cCCC
Confidence 34567777744444333 34456666654 2 245555544 135678889889986554 4578
Q ss_pred CEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCc-eeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCC
Q 001380 679 HALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSP-WDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDG 757 (1089)
Q Consensus 679 ~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P-~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g 757 (1089)
+.++.+|+..-...+... .++| ..|+++|....|++.|. ++.|+.||+.+..+....-.
T Consensus 105 gt~kIWdlR~~~~qR~~~------------------~~spVn~vvlhpnQteLis~dq-sg~irvWDl~~~~c~~~liP- 164 (311)
T KOG0315|consen 105 GTVKIWDLRSLSCQRNYQ------------------HNSPVNTVVLHPNQTELISGDQ-SGNIRVWDLGENSCTHELIP- 164 (311)
T ss_pred ceEEEEeccCcccchhcc------------------CCCCcceEEecCCcceEEeecC-CCcEEEEEccCCccccccCC-
Confidence 899999987633333221 2233 67999999888888875 67899999876644332210
Q ss_pred ccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCcccccccc
Q 001380 758 YERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQ 837 (1089)
Q Consensus 758 ~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~ 837 (1089)
.....-..|++.+|| .+.++-...++.+++++-++..... ..| +-.| ++.-.
T Consensus 165 ------------e~~~~i~sl~v~~dg-sml~a~nnkG~cyvW~l~~~~~~s~-----l~P--~~k~--------~ah~~ 216 (311)
T KOG0315|consen 165 ------------EDDTSIQSLTVMPDG-SMLAAANNKGNCYVWRLLNHQTASE-----LEP--VHKF--------QAHNG 216 (311)
T ss_pred ------------CCCcceeeEEEcCCC-cEEEEecCCccEEEEEccCCCcccc-----ceE--hhhe--------ecccc
Confidence 001124579999999 6666766778888888765332111 111 1111 11223
Q ss_pred CceEEEEccCCcEEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEEE
Q 001380 838 HPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRY 917 (1089)
Q Consensus 838 ~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~ 917 (1089)
|-+-.-++||++..++-+..+.++.++.++-......-.| .-..-.+-++..+|+-+|+-...+..+.
T Consensus 217 ~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~g------------h~rWvWdc~FS~dg~YlvTassd~~~rl 284 (311)
T KOG0315|consen 217 HILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTG------------HQRWVWDCAFSADGEYLVTASSDHTARL 284 (311)
T ss_pred eEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeec------------CCceEEeeeeccCccEEEecCCCCceee
Confidence 4556677899998888888999999987765222222111 2245667888889998888888899999
Q ss_pred EeCCCC
Q 001380 918 LDLNKE 923 (1089)
Q Consensus 918 ~~~~~~ 923 (1089)
.++..+
T Consensus 285 W~~~~~ 290 (311)
T KOG0315|consen 285 WDLSAG 290 (311)
T ss_pred cccccC
Confidence 999877
No 365
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=97.86 E-value=0.00015 Score=76.27 Aligned_cols=96 Identities=16% Similarity=0.114 Sum_probs=66.0
Q ss_pred CCCCccHHHHHHHHHhCCCeEEEEcCCChHh---HHHHHHHCCCCCCCccEEEEcCCccCCCC----CHHHHHHHHHHcC
Q 001380 164 GIGFPGALELINQCKSKGLKVAVASSADRIK---VDANLAAAGLPVSMFDAIVSADAFENLKP----APDIFLSASKILN 236 (1089)
Q Consensus 164 ~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~---~~~~l~~~gl~~~~fd~i~~~~~~~~~KP----~~~~~~~~l~~lg 236 (1089)
.+..|++.++++.|+++|++++++|+..... +...|.++|++ .+ +.++-.......|. |.+...++. +-|
T Consensus 119 apaip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T~~nL~~~G~~-~~-~~LiLR~~~d~~~~~~~yKs~~R~~l~-~~G 195 (229)
T TIGR01675 119 APALPEGLKLYQKIIELGIKIFLLSGRWEELRNATLDNLINAGFT-GW-KHLILRGLEDSNKTVVTYKSEVRKSLM-EEG 195 (229)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHHcCCC-Cc-CeeeecCCCCCCchHhHHHHHHHHHHH-hCC
Confidence 3789999999999999999999999987655 77888999986 44 66665542222332 223333333 223
Q ss_pred CCCCcEEEEcCChhhHHHHHHcCCeEEEE
Q 001380 237 VPTSECIVIEDALAGVQAAKAAQMRCIAV 265 (1089)
Q Consensus 237 v~p~~~v~VGD~~~Di~aA~~aG~~~i~V 265 (1089)
. .=+..|||.++|+.++ .+|.+++-.
T Consensus 196 Y--rIv~~iGDq~sDl~G~-~~~~RtFKL 221 (229)
T TIGR01675 196 Y--RIWGNIGDQWSDLLGS-PPGRRTFKL 221 (229)
T ss_pred c--eEEEEECCChHHhcCC-CccCceeeC
Confidence 2 3378899999999664 556555544
No 366
>PRK01742 tolB translocation protein TolB; Provisional
Probab=97.85 E-value=0.003 Score=74.85 Aligned_cols=197 Identities=14% Similarity=0.158 Sum_probs=117.6
Q ss_pred ceEEEeecCCeEEEEeC--CCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEE--CCCC
Q 001380 604 GKLAIDILNNRLFISDS--NHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVAD--TENH 679 (1089)
Q Consensus 604 ~~vavd~~~g~L~vsd~--~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD--~~n~ 679 (1089)
..++++|++.+|+++.. +...|++++..+.....+... . | .-..++++|+|+.|+++- .++.
T Consensus 207 ~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~-~-----g--------~~~~~~wSPDG~~La~~~~~~g~~ 272 (429)
T PRK01742 207 MSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASF-R-----G--------HNGAPAFSPDGSRLAFASSKDGVL 272 (429)
T ss_pred ccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecC-C-----C--------ccCceeECCCCCEEEEEEecCCcE
Confidence 34677876666655432 345788888874433233221 0 0 112578999998777753 2344
Q ss_pred EEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEEC--CCcEEEEEECCCCeEEEEeCCC
Q 001380 680 ALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMA--GQHQIWEHSTVDGVTRAFSGDG 757 (1089)
Q Consensus 680 ~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~--~~~~I~~~~~~~g~~~~~~g~g 757 (1089)
.|+.+|.+++.++.+.... ......+|+|+|..|+++.. +.-+||.++..++....+...
T Consensus 273 ~Iy~~d~~~~~~~~lt~~~-----------------~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~- 334 (429)
T PRK01742 273 NIYVMGANGGTPSQLTSGA-----------------GNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGR- 334 (429)
T ss_pred EEEEEECCCCCeEeeccCC-----------------CCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCC-
Confidence 6888998888877775311 12346789999987776643 456899988877665544210
Q ss_pred ccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCcccccccc
Q 001380 758 YERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQ 837 (1089)
Q Consensus 758 ~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~ 837 (1089)
. ..++++|+|+.|+++.. ..|.++++.++....+.... .
T Consensus 335 -------------~----~~~~~SpDG~~ia~~~~--~~i~~~Dl~~g~~~~lt~~~------------~---------- 373 (429)
T PRK01742 335 -------------G----YSAQISADGKTLVMING--DNVVKQDLTSGSTEVLSSTF------------L---------- 373 (429)
T ss_pred -------------C----CCccCCCCCCEEEEEcC--CCEEEEECCCCCeEEecCCC------------C----------
Confidence 0 13567899988877754 56777888877655442110 0
Q ss_pred CceEEEEccCCcEEE-EeC-CCCE-EEEEeCCCCeEEEEe
Q 001380 838 HPLGVYCAKNGQIYV-ADS-YNHK-IKKLDPASNRVSTLA 874 (1089)
Q Consensus 838 ~P~gva~~~~G~lyV-aD~-~n~~-I~~~d~~~~~v~t~~ 874 (1089)
-..+.++|+|+..+ +.. +... +..++.+++.+.++.
T Consensus 374 -~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~ 412 (429)
T PRK01742 374 -DESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLP 412 (429)
T ss_pred -CCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEcc
Confidence 02356889996443 332 2222 334466676667774
No 367
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=97.85 E-value=0.00016 Score=83.93 Aligned_cols=103 Identities=17% Similarity=0.179 Sum_probs=72.0
Q ss_pred CccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHC-CC-------CCCCccEEEEcCC-----------------ccCC
Q 001380 167 FPGALELINQCKSKGLKVAVASSADRIKVDANLAAA-GL-------PVSMFDAIVSADA-----------------FENL 221 (1089)
Q Consensus 167 ~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~-gl-------~~~~fd~i~~~~~-----------------~~~~ 221 (1089)
-|.+..+|+.||++|.+++++||..-..+...+..+ |- +.++||.|++... .+..
T Consensus 185 ~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~dW~dlFDvVIv~A~KP~FF~~~~pfr~vd~~~g~l 264 (448)
T PF05761_consen 185 DPKLPPWLERLRSAGKKLFLITNSPFDYTNAVMSYLLGPFLGEDPDWRDLFDVVIVDARKPGFFTEGRPFREVDTETGKL 264 (448)
T ss_dssp -CHHHHHHHHHHCCT-EEEEE-SS-HHHHHHHHHHHCGCCSSTTT-GGGCECEEEES--CCHHHCT---EEEEETTTSSE
T ss_pred CchHHHHHHHHHhcCceEEEecCCCCchhhhhhhhccCCCCCCCCChhhheeEEEEcCCCCcccCCCCceEEEECCCCcc
Confidence 578999999999999999999999989998888865 32 2589999987631 0110
Q ss_pred CCC-------------HHHHHHHHHHcCCCCCcEEEEcCCh-hhHHHHHHc-CCeEEEEcCCC
Q 001380 222 KPA-------------PDIFLSASKILNVPTSECIVIEDAL-AGVQAAKAA-QMRCIAVTTTL 269 (1089)
Q Consensus 222 KP~-------------~~~~~~~l~~lgv~p~~~v~VGD~~-~Di~aA~~a-G~~~i~V~~g~ 269 (1089)
+.. ..-.....+.+|...+++++|||.. .||...+.. ||+|++|..-.
T Consensus 265 ~~~~~~~~l~~g~vY~gGn~~~l~~ll~~~g~~VLY~GDhi~~Di~~~k~~~gWrT~~Ii~EL 327 (448)
T PF05761_consen 265 KWGKYVGPLEKGKVYSGGNWDQLHKLLGWRGKEVLYFGDHIYGDILKSKKRHGWRTAAIIPEL 327 (448)
T ss_dssp ECS---SS--TC-EEEE--HHHHHHHCT--GGGEEEEESSTTTTHHHHHHHH-SEEEEE-TTH
T ss_pred ccccccccccCCCEeecCCHHHHHHHHccCCCeEEEECCchhhhhhhhccccceEEEEEehhh
Confidence 111 1115667778899889999999999 999888877 99999997643
No 368
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.84 E-value=0.0023 Score=76.38 Aligned_cols=195 Identities=17% Similarity=0.299 Sum_probs=135.9
Q ss_pred ceeEEeeCCCEEEEEECCCCEEEEEECCCCe---EEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECC
Q 001380 660 QGLAYNAKKNLLYVADTENHALREIDFVNDT---VRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAG 736 (1089)
Q Consensus 660 ~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~---v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~ 736 (1089)
..+.+.++|+. .++-..+..|+.++..++. ...+ ...-..-.+++|+|++ .+.++...
T Consensus 163 ~~~~fs~~g~~-l~~~~~~~~i~~~~~~~~~~~~~~~l-----------------~~h~~~v~~~~fs~d~-~~l~s~s~ 223 (456)
T KOG0266|consen 163 TCVDFSPDGRA-LAAASSDGLIRIWKLEGIKSNLLREL-----------------SGHTRGVSDVAFSPDG-SYLLSGSD 223 (456)
T ss_pred EEEEEcCCCCe-EEEccCCCcEEEeecccccchhhccc-----------------cccccceeeeEECCCC-cEEEEecC
Confidence 44777888884 4444456666666654333 1111 1122356789999998 57777777
Q ss_pred CcEEEEEEC-CCC-eEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeE-EEecC
Q 001380 737 QHQIWEHST-VDG-VTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSR-LLAGG 813 (1089)
Q Consensus 737 ~~~I~~~~~-~~g-~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~-~~~g~ 813 (1089)
..+|+.||. ..+ .++++.|.. ...+.++++++| +++++-+..++|+.++..++... .+.+.
T Consensus 224 D~tiriwd~~~~~~~~~~l~gH~---------------~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~h 287 (456)
T KOG0266|consen 224 DKTLRIWDLKDDGRNLKTLKGHS---------------TYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKGH 287 (456)
T ss_pred CceEEEeeccCCCeEEEEecCCC---------------CceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeeecc
Confidence 889999998 443 345565432 234799999999 89999999999999999875543 34332
Q ss_pred CCCCCCCccccCCCCCccccccccCceEEEEccCCcEEEEeCCCCEEEEEeCCCCeE---EEEeccCCCCCCCCcccccc
Q 001380 814 DPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPASNRV---STLAGIGKAGFKDGAALAAQ 890 (1089)
Q Consensus 814 ~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~v---~t~~g~g~~g~~~g~~~~~~ 890 (1089)
. +.-.++++.++|+++++-++.+.|+.+|..++.. .++.+...
T Consensus 288 s----------------------~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~------------ 333 (456)
T KOG0266|consen 288 S----------------------DGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAEN------------ 333 (456)
T ss_pred C----------------------CceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCC------------
Confidence 1 1346788999999888889999999999998883 34433210
Q ss_pred cCCCceEEEccCCcEEEEECCCCEEEEEeCCCC
Q 001380 891 LSEPAGIIEAQNGNLFIADTNNNIIRYLDLNKE 923 (1089)
Q Consensus 891 l~~P~gi~vd~~G~lyVad~~n~~I~~~~~~~~ 923 (1089)
-..-+.++++++|...++-+.++.++.+++...
T Consensus 334 ~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~ 366 (456)
T KOG0266|consen 334 SAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSG 366 (456)
T ss_pred CCceeEEEECCCCcEEEEecCCCeEEEEEccCC
Confidence 001266778899988888888889999999865
No 369
>COG4996 Predicted phosphatase [General function prediction only]
Probab=97.84 E-value=2.9e-05 Score=71.20 Aligned_cols=81 Identities=20% Similarity=0.138 Sum_probs=66.5
Q ss_pred CCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHc------CC
Q 001380 164 GIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKIL------NV 237 (1089)
Q Consensus 164 ~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~l------gv 237 (1089)
..++|.+++++.++++.|+-+..+|=+....+-..|+.+++. .||+.++.-. .--+-.|+-+++..+ .+
T Consensus 40 v~L~~~v~~~l~warnsG~i~~~~sWN~~~kA~~aLral~~~-~yFhy~VieP----hP~K~~ML~~llr~i~~er~~~i 114 (164)
T COG4996 40 VHLFPDVKETLKWARNSGYILGLASWNFEDKAIKALRALDLL-QYFHYIVIEP----HPYKFLMLSQLLREINTERNQKI 114 (164)
T ss_pred EEEcHHHHHHHHHHHhCCcEEEEeecCchHHHHHHHHHhchh-hhEEEEEecC----CChhHHHHHHHHHHHHHhhcccc
Confidence 478999999999999999999999999999999999999996 9999887532 112335666666544 46
Q ss_pred CCCcEEEEcCCh
Q 001380 238 PTSECIVIEDAL 249 (1089)
Q Consensus 238 ~p~~~v~VGD~~ 249 (1089)
.|++++++.|+.
T Consensus 115 kP~~Ivy~DDR~ 126 (164)
T COG4996 115 KPSEIVYLDDRR 126 (164)
T ss_pred CcceEEEEeccc
Confidence 899999999987
No 370
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.84 E-value=5e-05 Score=71.54 Aligned_cols=67 Identities=39% Similarity=0.628 Sum_probs=53.0
Q ss_pred cccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHH
Q 001380 449 RDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLW 528 (1089)
Q Consensus 449 ~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~ 528 (1089)
...++++++++||++||++|+.++|.+.++.+++.. .+.++.++.. |....+.
T Consensus 28 ~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~i~~~--------------------------~~~~~~~ 80 (127)
T COG0526 28 SELKGKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG-DVEVVAVNVD--------------------------DENPDLA 80 (127)
T ss_pred hhcCCceEEEEEEcCcCHHHHhhchhHHHHHHHhcC-CcEEEEEECC--------------------------CCChHHH
Confidence 444589999999999999999999999999999886 5788888641 1345666
Q ss_pred HHhC--CCceeEEEEE
Q 001380 529 RELG--VNSWPTFAVV 542 (1089)
Q Consensus 529 ~~~~--v~~~Pt~~li 542 (1089)
..|+ +..+|+.++.
T Consensus 81 ~~~~~~~~~~p~~~~~ 96 (127)
T COG0526 81 AEFGVAVRSIPTLLLF 96 (127)
T ss_pred HHHhhhhccCCeEEEE
Confidence 6676 7777887655
No 371
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=97.83 E-value=7.5e-05 Score=81.15 Aligned_cols=79 Identities=13% Similarity=0.080 Sum_probs=60.4
Q ss_pred EEEcCCccCCCCC----HHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHc-------CCeEEEEcCCCCHHHHhhcCCc
Q 001380 212 IVSADAFENLKPA----PDIFLSASKILNVPTSECIVIEDALAGVQAAKAA-------QMRCIAVTTTLSEERLKEASPS 280 (1089)
Q Consensus 212 i~~~~~~~~~KP~----~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~a-------G~~~i~V~~g~~~~~l~~~~~d 280 (1089)
++.+..+...||+ ...++.+++++++.+++++||||+.+|+.+++.+ |..++.|..|. ....++
T Consensus 152 v~~g~~~~e~~p~~~~Kg~a~~~~~~~~~~~~~~~i~iGD~~~D~~~~~~~~~~~~~~g~~~v~v~~g~-----~~~~A~ 226 (244)
T TIGR00685 152 VMDGKAVVELKPRFVNKGEIVKRLLWHQPGSGISPVYLGDDITDEDAFRVVNNQWGNYGFYPVPIGSGS-----KKTVAK 226 (244)
T ss_pred EEECCeEEEEeeCCCCHHHHHHHHHHhcccCCCceEEEcCCCcHHHHHHHHhcccCCCCeEEEEEecCC-----cCCCce
Confidence 3344433344554 5899999999999999999999999999999998 66777776441 345689
Q ss_pred EEecCcccCCHHHHHhc
Q 001380 281 LIRKEIGSVSLNDILTG 297 (1089)
Q Consensus 281 ~vi~dl~el~i~~ll~~ 297 (1089)
+++++..++ .++|..
T Consensus 227 ~~~~~~~~v--~~~L~~ 241 (244)
T TIGR00685 227 FHLTGPQQV--LEFLGL 241 (244)
T ss_pred EeCCCHHHH--HHHHHH
Confidence 999999886 666654
No 372
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=97.82 E-value=2.8e-05 Score=81.60 Aligned_cols=91 Identities=23% Similarity=0.376 Sum_probs=73.6
Q ss_pred CCEEEEEEecCCCcchhhhhhhHHHHHHHcCCC---CEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHH
Q 001380 453 GKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDM---PFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWR 529 (1089)
Q Consensus 453 gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~---~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~ 529 (1089)
...|+|+|+|.||+..+..+|.+.+.+++|+++ +=+|.|. |-+|.+..++.
T Consensus 13 ~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~--------------------------VDcd~e~~ia~ 66 (375)
T KOG0912|consen 13 NELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGK--------------------------VDCDKEDDIAD 66 (375)
T ss_pred ceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEE--------------------------cccchhhHHhh
Confidence 478999999999999999999999877766531 3334443 12367889999
Q ss_pred HhCCCceeEEEEECCCCcEEEE-ecCCCchhhHHHHHHHHHH
Q 001380 530 ELGVNSWPTFAVVGPNGKLLAQ-LAGEGHRKDLDDLVEAALL 570 (1089)
Q Consensus 530 ~~~v~~~Pt~~lid~~G~i~~~-~~G~~~~~~l~~~l~~~l~ 570 (1089)
+|.|..+||.-|+ .+|.+..+ |+|..+.+.+.++|+..++
T Consensus 67 ky~I~KyPTlKvf-rnG~~~~rEYRg~RsVeaL~efi~kq~s 107 (375)
T KOG0912|consen 67 KYHINKYPTLKVF-RNGEMMKREYRGQRSVEALIEFIEKQLS 107 (375)
T ss_pred hhccccCceeeee-eccchhhhhhccchhHHHHHHHHHHHhc
Confidence 9999999999999 89999885 9999999999888876543
No 373
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=97.81 E-value=3.4e-05 Score=80.35 Aligned_cols=88 Identities=18% Similarity=0.411 Sum_probs=65.4
Q ss_pred CCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEE-EEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 453 GKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTV-VGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 453 gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~v-i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
...++|+|||+||.+|++..|.+.+.-.++++.|+.| ||- .+ ...-..++..|
T Consensus 43 ddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGK----lD----------------------aT~f~aiAnef 96 (468)
T KOG4277|consen 43 DDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGK----LD----------------------ATRFPAIANEF 96 (468)
T ss_pred CCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecc----cc----------------------cccchhhHhhh
Confidence 3689999999999999999999999887777655432 111 01 01235789999
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHH
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAA 568 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~ 568 (1089)
||+++||..++ + |-..+.+.|....+.+.++-.+.
T Consensus 97 giqGYPTIk~~-k-gd~a~dYRG~R~Kd~iieFAhR~ 131 (468)
T KOG4277|consen 97 GIQGYPTIKFF-K-GDHAIDYRGGREKDAIIEFAHRC 131 (468)
T ss_pred ccCCCceEEEe-c-CCeeeecCCCccHHHHHHHHHhc
Confidence 99999999999 3 33456788888888887775543
No 374
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.79 E-value=2.5e-05 Score=90.72 Aligned_cols=97 Identities=22% Similarity=0.257 Sum_probs=72.8
Q ss_pred cccCCCEEEEEEecCCCcchhhhhhhHH-HHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhH
Q 001380 449 RDLKGKVVVLDFWTYCCINCMHVLPDLE-FLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNL 527 (1089)
Q Consensus 449 ~~~~gk~vll~Fwa~wC~~C~~~~p~l~-~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l 527 (1089)
.+-++|+|+|||+|.||..|+..-+..- +.....+-.+++.+-++..+ +. +.+.++
T Consensus 470 a~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~-----~~------------------p~~~~l 526 (569)
T COG4232 470 AEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTA-----ND------------------PAITAL 526 (569)
T ss_pred HhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecC-----CC------------------HHHHHH
Confidence 3445679999999999999997766554 44444555678888775422 11 123456
Q ss_pred HHHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHH
Q 001380 528 WRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAA 568 (1089)
Q Consensus 528 ~~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~ 568 (1089)
-++||+-+.|++++++++|+-.-...|..+.+.+.+.+++.
T Consensus 527 Lk~~~~~G~P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 527 LKRLGVFGVPTYLFFGPQGSEPEILTGFLTADAFLEHLERA 567 (569)
T ss_pred HHHcCCCCCCEEEEECCCCCcCcCCcceecHHHHHHHHHHh
Confidence 67899999999999999998877788999999888887654
No 375
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.79 E-value=0.016 Score=62.48 Aligned_cols=197 Identities=17% Similarity=0.266 Sum_probs=114.4
Q ss_pred CCeEEEEeCCCCEEEEEeC-CCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEEEEECCCCe
Q 001380 612 NNRLFISDSNHNRIVVTDL-DGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNDT 690 (1089)
Q Consensus 612 ~g~L~vsd~~~~~I~~~~~-~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~ 690 (1089)
++++|+++ ..+.|+.+|. +|+.+..+...+. +..+ ..+ .++.+||+... +.|+.+|..+|.
T Consensus 36 ~~~v~~~~-~~~~l~~~d~~tG~~~W~~~~~~~------------~~~~--~~~--~~~~v~v~~~~-~~l~~~d~~tG~ 97 (238)
T PF13360_consen 36 GGRVYVAS-GDGNLYALDAKTGKVLWRFDLPGP------------ISGA--PVV--DGGRVYVGTSD-GSLYALDAKTGK 97 (238)
T ss_dssp TTEEEEEE-TTSEEEEEETTTSEEEEEEECSSC------------GGSG--EEE--ETTEEEEEETT-SEEEEEETTTSC
T ss_pred CCEEEEEc-CCCEEEEEECCCCCEEEEeecccc------------ccce--eee--cccccccccce-eeeEecccCCcc
Confidence 89999995 5789999997 7998877665321 1112 223 34558988844 499999977776
Q ss_pred EEEE-ecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCccccCCCCCCCC
Q 001380 691 VRTL-AGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLN 769 (1089)
Q Consensus 691 v~~~-ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~ 769 (1089)
+.-- ....... ..+..+...+++ ++.+|++.. ++.|+.+|+.+|.+..-...+... +....
T Consensus 98 ~~W~~~~~~~~~-----------~~~~~~~~~~~~--~~~~~~~~~-~g~l~~~d~~tG~~~w~~~~~~~~---~~~~~- 159 (238)
T PF13360_consen 98 VLWSIYLTSSPP-----------AGVRSSSSPAVD--GDRLYVGTS-SGKLVALDPKTGKLLWKYPVGEPR---GSSPI- 159 (238)
T ss_dssp EEEEEEE-SSCT-----------CSTB--SEEEEE--TTEEEEEET-CSEEEEEETTTTEEEEEEESSTT----SS--E-
T ss_pred eeeeeccccccc-----------cccccccCceEe--cCEEEEEec-cCcEEEEecCCCcEEEEeecCCCC---CCcce-
Confidence 6544 2222110 112344455555 568888775 789999999998774332111100 00000
Q ss_pred ccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccCCc
Q 001380 770 TSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQ 849 (1089)
Q Consensus 770 ~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~ 849 (1089)
..+....+-.+..++ .+|++..... +..++..++.... ... +..+.+.....++.
T Consensus 160 ~~~~~~~~~~~~~~~-~v~~~~~~g~-~~~~d~~tg~~~w-~~~----------------------~~~~~~~~~~~~~~ 214 (238)
T PF13360_consen 160 SSFSDINGSPVISDG-RVYVSSGDGR-VVAVDLATGEKLW-SKP----------------------ISGIYSLPSVDGGT 214 (238)
T ss_dssp EEETTEEEEEECCTT-EEEEECCTSS-EEEEETTTTEEEE-EEC----------------------SS-ECECEECCCTE
T ss_pred eeecccccceEEECC-EEEEEcCCCe-EEEEECCCCCEEE-Eec----------------------CCCccCCceeeCCE
Confidence 011111222222344 9999886654 5555888766432 110 11233323344678
Q ss_pred EEEEeCCCCEEEEEeCCCCeE
Q 001380 850 IYVADSYNHKIKKLDPASNRV 870 (1089)
Q Consensus 850 lyVaD~~n~~I~~~d~~~~~v 870 (1089)
+|+.+ ..++|..+|+.+|++
T Consensus 215 l~~~~-~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 215 LYVTS-SDGRLYALDLKTGKV 234 (238)
T ss_dssp EEEEE-TTTEEEEEETTTTEE
T ss_pred EEEEe-CCCEEEEEECCCCCE
Confidence 99998 789999999998875
No 376
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=97.78 E-value=0.0021 Score=76.06 Aligned_cols=193 Identities=20% Similarity=0.342 Sum_probs=132.7
Q ss_pred cceeEEeeCCCEEEEEECCCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCc
Q 001380 659 PQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQH 738 (1089)
Q Consensus 659 P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~ 738 (1089)
..|..+.|+.+ +.++..+...+|.+.+.+..-......+ +.=-|++.|.|.| .|++.++..
T Consensus 454 Vyg~sFsPd~r-fLlScSED~svRLWsl~t~s~~V~y~GH----------------~~PVwdV~F~P~G--yYFatas~D 514 (707)
T KOG0263|consen 454 VYGCSFSPDRR-FLLSCSEDSSVRLWSLDTWSCLVIYKGH----------------LAPVWDVQFAPRG--YYFATASHD 514 (707)
T ss_pred eeeeeeccccc-ceeeccCCcceeeeecccceeEEEecCC----------------CcceeeEEecCCc--eEEEecCCC
Confidence 37888999988 7788888899999998876554443211 1124899999987 555555433
Q ss_pred ---EEEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEE-EecCC
Q 001380 739 ---QIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRL-LAGGD 814 (1089)
Q Consensus 739 ---~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~-~~g~~ 814 (1089)
++|..|. ....+.|+|. ++.-..+.++|+. ....+.+...+||.++..+|.+.. +.|.
T Consensus 515 ~tArLWs~d~-~~PlRifagh---------------lsDV~cv~FHPNs-~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH- 576 (707)
T KOG0263|consen 515 QTARLWSTDH-NKPLRIFAGH---------------LSDVDCVSFHPNS-NYVATGSSDRTVRLWDVSTGNSVRIFTGH- 576 (707)
T ss_pred ceeeeeeccc-CCchhhhccc---------------ccccceEEECCcc-cccccCCCCceEEEEEcCCCcEEEEecCC-
Confidence 4555543 3344555542 2334468899986 333444666789999988776544 4332
Q ss_pred CCCCCCccccCCCCCccccccccCceEEEEccCCcEEEEeCCCCEEEEEeCCCCe-EEEEeccCCCCCCCCcccccccCC
Q 001380 815 PIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPASNR-VSTLAGIGKAGFKDGAALAAQLSE 893 (1089)
Q Consensus 815 ~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~-v~t~~g~g~~g~~~g~~~~~~l~~ 893 (1089)
. ..-..|+++|+|.-.++-...+.|+.+|..++. +.++.+. -+.
T Consensus 577 ------------~---------~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~H--------------t~t 621 (707)
T KOG0263|consen 577 ------------K---------GPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGH--------------TGT 621 (707)
T ss_pred ------------C---------CceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcc--------------cCc
Confidence 1 124678999999988888888999999987754 3344332 122
Q ss_pred CceEEEccCCcEEEEECCCCEEEEEeCCCC
Q 001380 894 PAGIIEAQNGNLFIADTNNNIIRYLDLNKE 923 (1089)
Q Consensus 894 P~gi~vd~~G~lyVad~~n~~I~~~~~~~~ 923 (1089)
-..|.+..+|++++++..++.|+..|+...
T Consensus 622 i~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 622 IYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred eeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 456788889999999999999999998764
No 377
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.77 E-value=0.017 Score=63.89 Aligned_cols=113 Identities=15% Similarity=0.156 Sum_probs=73.4
Q ss_pred CCeEEEEeCC----CCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECC---------
Q 001380 612 NNRLFISDSN----HNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTE--------- 677 (1089)
Q Consensus 612 ~g~L~vsd~~----~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~--------- 677 (1089)
..++||.|.. .+|++++|.+ ++++-.+..+ | . ..++++|+|+.+|++.+.
T Consensus 2 ~~rvyV~D~~~~~~~~rv~viD~d~~k~lGmi~~g--------------~-~-~~~~~spdgk~~y~a~T~~sR~~rG~R 65 (342)
T PF06433_consen 2 AHRVYVQDPVFFHMTSRVYVIDADSGKLLGMIDTG--------------F-L-GNVALSPDGKTIYVAETFYSRGTRGER 65 (342)
T ss_dssp TTEEEEEE-GGGGSSEEEEEEETTTTEEEEEEEEE--------------S-S-EEEEE-TTSSEEEEEEEEEEETTEEEE
T ss_pred CcEEEEECCccccccceEEEEECCCCcEEEEeecc--------------c-C-CceeECCCCCEEEEEEEEEeccccccc
Confidence 4689999973 3699999987 6666555443 1 2 347789999999999874
Q ss_pred CCEEEEEECCCCeEEE--EecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCC-cEEEEEECCCCeEE
Q 001380 678 NHALREIDFVNDTVRT--LAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQ-HQIWEHSTVDGVTR 751 (1089)
Q Consensus 678 n~~I~~~d~~~g~v~~--~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~-~~I~~~~~~~g~~~ 751 (1089)
...|..+|.++-..+. ....+ ...+.+..++-.+++.+|+.+||.+... ..|-.+|.+.+.+.
T Consensus 66 tDvv~~~D~~TL~~~~EI~iP~k-----------~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv 131 (342)
T PF06433_consen 66 TDVVEIWDTQTLSPTGEIEIPPK-----------PRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVV 131 (342)
T ss_dssp EEEEEEEETTTTEEEEEEEETTS------------B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEE
T ss_pred eeEEEEEecCcCcccceEecCCc-----------chheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCcee
Confidence 2356678877643332 11111 0123356888999999999999998774 46888999887654
No 378
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=97.77 E-value=0.00011 Score=78.14 Aligned_cols=104 Identities=15% Similarity=0.111 Sum_probs=81.1
Q ss_pred cccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCc-cceeecCChhH
Q 001380 449 RDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGIS-HPVVNDGDMNL 527 (1089)
Q Consensus 449 ~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~d~~~~l 527 (1089)
+++..++-|+.||.+-|+.|.++.|.|+.+.++| |+.|++||++.. +++ ||.. -.+...
T Consensus 139 ~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~y---g~~v~~VS~DG~----------------~~p~fp~~-~~d~gq 198 (248)
T PRK13703 139 AKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTY---GLSVIPVSVDGV----------------INPLLPDS-RTDQGQ 198 (248)
T ss_pred HHHHhcceEEEEECCCCchhHHHHHHHHHHHHHh---CCeEEEEecCCC----------------CCCCCCCC-ccChhH
Confidence 5566789999999999999999999999999997 589999987421 111 3322 134466
Q ss_pred HHHhCCCceeEEEEECCCC-cEEEEecCCCchhhHHHHHHHHHHHh
Q 001380 528 WRELGVNSWPTFAVVGPNG-KLLAQLAGEGHRKDLDDLVEAALLFY 572 (1089)
Q Consensus 528 ~~~~~v~~~Pt~~lid~~G-~i~~~~~G~~~~~~l~~~l~~~l~~~ 572 (1089)
++.+||..+|++||++++. ++.-...|..+.++|.+-|..+...+
T Consensus 199 a~~l~v~~~PAl~Lv~~~t~~~~pv~~G~iS~deL~~Ri~~v~t~~ 244 (248)
T PRK13703 199 AQRLGVKYFPALMLVDPKSGSVRPLSYGFITQDDLAKRFLNVSTDF 244 (248)
T ss_pred HHhcCCcccceEEEEECCCCcEEEEeeccCCHHHHHHHHHHHHhcc
Confidence 7899999999999999996 55555788899999888877666544
No 379
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=97.76 E-value=0.016 Score=65.72 Aligned_cols=242 Identities=16% Similarity=0.122 Sum_probs=148.9
Q ss_pred CCCCceEEEeecCCeEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCC
Q 001380 600 LKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENH 679 (1089)
Q Consensus 600 l~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~ 679 (1089)
-+.-..+++.+ ++..+++-+..+.|..|+........+.+. ..-+.-.+++.+..+. +|...+ ..
T Consensus 320 nK~ITaLtv~~-d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~------------~h~nqI~~~~~~~~~~-~~t~g~-Dd 384 (603)
T KOG0318|consen 320 NKSITALTVSP-DGKTIYSGSYDGHINSWDSGSGTSDRLAGK------------GHTNQIKGMAASESGE-LFTIGW-DD 384 (603)
T ss_pred ccceeEEEEcC-CCCEEEeeccCceEEEEecCCccccccccc------------cccceEEEEeecCCCc-EEEEec-CC
Confidence 34555788887 556666666788999998753332222211 1234567888886666 666554 55
Q ss_pred EEEEEECCCCeEEEE--ecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCC
Q 001380 680 ALREIDFVNDTVRTL--AGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDG 757 (1089)
Q Consensus 680 ~I~~~d~~~g~v~~~--ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g 757 (1089)
.|++++...+-.+.- ...| +.|.++++.++++.+.++... .|..+...++ +....
T Consensus 385 ~l~~~~~~~~~~t~~~~~~lg-----------------~QP~~lav~~d~~~avv~~~~--~iv~l~~~~~-~~~~~--- 441 (603)
T KOG0318|consen 385 TLRVISLKDNGYTKSEVVKLG-----------------SQPKGLAVLSDGGTAVVACIS--DIVLLQDQTK-VSSIP--- 441 (603)
T ss_pred eEEEEecccCcccccceeecC-----------------CCceeEEEcCCCCEEEEEecC--cEEEEecCCc-ceeec---
Confidence 788887643221111 1111 468999999988777777643 3333332111 11111
Q ss_pred ccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCcccccccc
Q 001380 758 YERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQ 837 (1089)
Q Consensus 758 ~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~ 837 (1089)
. -.+|+++|++|+++.+-| --..+.|+.+.+.++.....+--. ....
T Consensus 442 ------------~-~y~~s~vAv~~~~~~vaV-GG~Dgkvhvysl~g~~l~ee~~~~-------------------~h~a 488 (603)
T KOG0318|consen 442 ------------I-GYESSAVAVSPDGSEVAV-GGQDGKVHVYSLSGDELKEEAKLL-------------------EHRA 488 (603)
T ss_pred ------------c-ccccceEEEcCCCCEEEE-ecccceEEEEEecCCcccceeeee-------------------cccC
Confidence 1 136889999999855544 445677999998865532111000 0012
Q ss_pred CceEEEEccCCcEEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEEE
Q 001380 838 HPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRY 917 (1089)
Q Consensus 838 ~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~ 917 (1089)
.+..|+++|||..+++--.++++..+|.+++++.+-- .+| .-..-.+|+-.|+..++.+.+-...|.+
T Consensus 489 ~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~----w~F--------HtakI~~~aWsP~n~~vATGSlDt~Vii 556 (603)
T KOG0318|consen 489 AITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNR----WAF--------HTAKINCVAWSPNNKLVATGSLDTNVII 556 (603)
T ss_pred CceEEEECCCCcEEEEeccCCcEEEEEcccCceecce----eee--------eeeeEEEEEeCCCceEEEeccccceEEE
Confidence 3678999999987777778899999999888774321 110 1123557777888777777777888888
Q ss_pred EeCCCCC
Q 001380 918 LDLNKEE 924 (1089)
Q Consensus 918 ~~~~~~~ 924 (1089)
++.+...
T Consensus 557 ysv~kP~ 563 (603)
T KOG0318|consen 557 YSVKKPA 563 (603)
T ss_pred EEccChh
Confidence 8888763
No 380
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=97.76 E-value=0.00019 Score=75.83 Aligned_cols=44 Identities=14% Similarity=0.014 Sum_probs=40.5
Q ss_pred cCCCCCHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeE
Q 001380 219 ENLKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRC 262 (1089)
Q Consensus 219 ~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~ 262 (1089)
..+.+|+..++.++++++++++++++|||+.+|+.+++.+|+..
T Consensus 159 p~~~~K~~~~~~~~~~~~~~~~~~~~~GD~~nD~~~~~~~~~~v 202 (204)
T TIGR01484 159 PAGVDKGSALQALLKELNGKRDEILAFGDSGNDEEMFEVAGLAV 202 (204)
T ss_pred cCCCChHHHHHHHHHHhCCCHHHEEEEcCCHHHHHHHHHcCCce
Confidence 45788999999999999999999999999999999999999754
No 381
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=97.75 E-value=8.8e-05 Score=69.30 Aligned_cols=91 Identities=15% Similarity=0.142 Sum_probs=58.7
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCC--CCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHH
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKD--MPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWR 529 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~--~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~ 529 (1089)
+.+.+||.|+|+| |.|-+ +|...+|+.+|.. ..+.|--|.++++.. ..+.+|++
T Consensus 17 ~~~~vlV~F~A~~-Pwc~k-~~~~~~LA~e~~~aa~~v~lakVd~~d~~~----------------------~~~~~L~~ 72 (116)
T cd03007 17 KFKYSLVKFDTAY-PYGEK-HEAFTRLAESSASATDDLLVAEVGIKDYGE----------------------KLNMELGE 72 (116)
T ss_pred cCCcEEEEEeCCC-CCCCC-hHHHHHHHHHHHhhcCceEEEEEecccccc----------------------hhhHHHHH
Confidence 4578999999944 33333 4667777766632 235555554321110 12467999
Q ss_pred HhCCC--ceeEEEEECCCCc--EEEEecCC-CchhhHHHHHHH
Q 001380 530 ELGVN--SWPTFAVVGPNGK--LLAQLAGE-GHRKDLDDLVEA 567 (1089)
Q Consensus 530 ~~~v~--~~Pt~~lid~~G~--i~~~~~G~-~~~~~l~~~l~~ 567 (1089)
+|+|. ++||++++ ++|. ....+.|. .+.+.|.++|.+
T Consensus 73 ~y~I~~~gyPTl~lF-~~g~~~~~~~Y~G~~r~~~~lv~~v~~ 114 (116)
T cd03007 73 RYKLDKESYPVIYLF-HGGDFENPVPYSGADVTVDALQRFLKG 114 (116)
T ss_pred HhCCCcCCCCEEEEE-eCCCcCCCccCCCCcccHHHHHHHHHh
Confidence 99999 99999999 4553 22357785 788888777754
No 382
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=4.5e-05 Score=87.83 Aligned_cols=86 Identities=24% Similarity=0.436 Sum_probs=61.5
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCC-CEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHH
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDM-PFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRE 530 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~-~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~ 530 (1089)
.+|-|||.|||+||++|++..|.+++|+++|++. +++|.-+.. ..+++ ..
T Consensus 383 e~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDa----------------------------TaNd~-~~ 433 (493)
T KOG0190|consen 383 EGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDA----------------------------TANDV-PS 433 (493)
T ss_pred cccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEecc----------------------------ccccC-cc
Confidence 5789999999999999999999999999999975 566655521 01111 23
Q ss_pred hCCCceeEEEEECCCCcE-EEEecCCCchhhHHHHHH
Q 001380 531 LGVNSWPTFAVVGPNGKL-LAQLAGEGHRKDLDDLVE 566 (1089)
Q Consensus 531 ~~v~~~Pt~~lid~~G~i-~~~~~G~~~~~~l~~~l~ 566 (1089)
..+.++||+++.-..++- .-.+.|...-+++..+|+
T Consensus 434 ~~~~~fPTI~~~pag~k~~pv~y~g~R~le~~~~fi~ 470 (493)
T KOG0190|consen 434 LKVDGFPTILFFPAGHKSNPVIYNGDRTLEDLKKFIK 470 (493)
T ss_pred ccccccceEEEecCCCCCCCcccCCCcchHHHHhhhc
Confidence 466779999999544432 234567766666666654
No 383
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=97.70 E-value=0.00032 Score=70.31 Aligned_cols=94 Identities=13% Similarity=0.179 Sum_probs=61.6
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCChHhH---HHHHHHC-----CCCCCCccEEEEcCC---------ccCCCC---C
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSADRIKV---DANLAAA-----GLPVSMFDAIVSADA---------FENLKP---A 224 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~---~~~l~~~-----gl~~~~fd~i~~~~~---------~~~~KP---~ 224 (1089)
...|++.++++.++++|++++++|++..... +..++.+ +++ ...++++.. +...+| +
T Consensus 27 ~~~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l~~~~~~~~~lp---~g~li~~~g~~~~~~~~e~i~~~~~~~K 103 (157)
T smart00775 27 WTHPGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYLSQIKQDGHNLP---HGPVLLSPDRLFAALHREVISKKPEVFK 103 (157)
T ss_pred cCCHHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHHHHhhhccccCC---CceEEEcCCcchhhhhcccccCCHHHHH
Confidence 3468999999999999999999999876655 4667662 342 234444432 112333 4
Q ss_pred HHHHHHHHHHcCCCCCc-EEEEcCChhhHHHHHHcCCe
Q 001380 225 PDIFLSASKILNVPTSE-CIVIEDALAGVQAAKAAQMR 261 (1089)
Q Consensus 225 ~~~~~~~l~~lgv~p~~-~v~VGD~~~Di~aA~~aG~~ 261 (1089)
.+.+..+.+.+.-.--. ++.+|++.+|+++=+++|+.
T Consensus 104 ~~~l~~i~~~~~~~~~~f~~~~gn~~~D~~~y~~~gi~ 141 (157)
T smart00775 104 IACLRDIKSLFPPQGNPFYAGFGNRITDVISYSAVGIP 141 (157)
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCchhHHHHHHcCCC
Confidence 44555555544321122 34588889999999999984
No 384
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=0.00011 Score=85.45 Aligned_cols=90 Identities=21% Similarity=0.413 Sum_probs=72.4
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
.++.+++.||++||++|.+..|.+.++...+++ .+.+..|.+ +.+..++++|
T Consensus 46 ~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~-~~~~~~vd~---------------------------~~~~~~~~~y 97 (383)
T KOG0191|consen 46 DDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKG-KVKIGAVDC---------------------------DEHKDLCEKY 97 (383)
T ss_pred cCCceEEEEECCCCcchhhhchHHHHHHHHhcC-ceEEEEeCc---------------------------hhhHHHHHhc
Confidence 567899999999999999999999999999887 366666633 5678999999
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHH
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALL 570 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~ 570 (1089)
+|.+.||+.++.+. .....+.|..+.+.+..++...+.
T Consensus 98 ~i~gfPtl~~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 135 (383)
T KOG0191|consen 98 GIQGFPTLKVFRPG-KKPIDYSGPRNAESLAEFLIKELE 135 (383)
T ss_pred CCccCcEEEEEcCC-CceeeccCcccHHHHHHHHHHhhc
Confidence 99999999999766 444556677677777777655554
No 385
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=97.69 E-value=0.0064 Score=69.07 Aligned_cols=189 Identities=16% Similarity=0.183 Sum_probs=103.9
Q ss_pred ceEEEeecCCeEE-EEeCCC----CEEEEEeCCC--CEEEEEecCCCCCC--CCC-CCCccccCCcceeEEeeCCCEEEE
Q 001380 604 GKLAIDILNNRLF-ISDSNH----NRIVVTDLDG--NFIVQIGSSGEEGL--RDG-SFDDATFNRPQGLAYNAKKNLLYV 673 (1089)
Q Consensus 604 ~~vavd~~~g~L~-vsd~~~----~~I~~~~~~g--~~~~~i~~~g~~g~--~dG-~~~~~~f~~P~gla~d~~g~~lyV 673 (1089)
.||++++.++++| |+|.+. -+++.++.+. .....+......-. .+| .+.. .-..+.||++.++|. +||
T Consensus 23 Sgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~-~~~D~Egi~~~~~g~-~~i 100 (326)
T PF13449_consen 23 SGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPK-NGLDPEGIAVPPDGS-FWI 100 (326)
T ss_pred eeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCc-CCCChhHeEEecCCC-EEE
Confidence 5788886567766 778766 2355544332 11111100001111 123 2222 223889999977777 999
Q ss_pred EECCC------CEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCC----------
Q 001380 674 ADTEN------HALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQ---------- 737 (1089)
Q Consensus 674 aD~~n------~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~---------- 737 (1089)
++-+. ++|++++.++..+..+.-......... .......=...-+|+++++|..||+++...
T Consensus 101 s~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~--~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~ 178 (326)
T PF13449_consen 101 SSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDAN--GTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANP 178 (326)
T ss_pred EeCCccCCCCCCEEEEECCCCcccceEccccccccccC--ccccccCCCCeEEEEECCCCCEEEEEECccccCCCccccc
Confidence 99999 999999988655555521111000000 000001112567899999998899987554
Q ss_pred -----cEEEEEECCC-C-eEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCC-------CCeEEEEEcC
Q 001380 738 -----HQIWEHSTVD-G-VTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSE-------SSSIRALNLK 803 (1089)
Q Consensus 738 -----~~I~~~~~~~-g-~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~-------~~~I~~~~~~ 803 (1089)
.+|+.||..+ + ....|.=. ....+....-..++.++.-+++ .++|.+.. ..+|+++++.
T Consensus 179 ~~~~~~ri~~~d~~~~~~~~~~~~y~------ld~~~~~~~~~~isd~~al~d~-~lLvLER~~~~~~~~~~ri~~v~l~ 251 (326)
T PF13449_consen 179 DNGSPLRILRYDPKTPGEPVAEYAYP------LDPPPTAPGDNGISDIAALPDG-RLLVLERDFSPGTGNYKRIYRVDLS 251 (326)
T ss_pred ccCceEEEEEecCCCCCccceEEEEe------CCccccccCCCCceeEEEECCC-cEEEEEccCCCCccceEEEEEEEcc
Confidence 4577777764 2 12222200 0000000123457788888888 79998866 3367777765
No 386
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=97.68 E-value=4.6e-05 Score=73.29 Aligned_cols=80 Identities=19% Similarity=0.322 Sum_probs=47.1
Q ss_pred cccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHH
Q 001380 449 RDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLW 528 (1089)
Q Consensus 449 ~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~ 528 (1089)
+.+..+..++.|-.+||+.|++.+|.|.++.+..+...+.++.. +++.+...+ .+
T Consensus 37 ~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~r-------d~~~el~~~-----------------~l- 91 (129)
T PF14595_consen 37 KSIQKPYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILR-------DENKELMDQ-----------------YL- 91 (129)
T ss_dssp HT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-H-------HHHHHHTTT-----------------TT-
T ss_pred HhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEe-------cCChhHHHH-----------------HH-
Confidence 45566788899999999999999999999999865444555543 222221111 11
Q ss_pred HHhCCCceeEEEEECCCCcEEEEecC
Q 001380 529 RELGVNSWPTFAVVGPNGKLLAQLAG 554 (1089)
Q Consensus 529 ~~~~v~~~Pt~~lid~~G~i~~~~~G 554 (1089)
. .|...+|+++++|.+|+.+.++..
T Consensus 92 t-~g~~~IP~~I~~d~~~~~lg~wge 116 (129)
T PF14595_consen 92 T-NGGRSIPTFIFLDKDGKELGRWGE 116 (129)
T ss_dssp T--SS--SSEEEEE-TT--EEEEEES
T ss_pred h-CCCeecCEEEEEcCCCCEeEEEcC
Confidence 1 578899999999999999988754
No 387
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.64 E-value=0.022 Score=67.31 Aligned_cols=201 Identities=13% Similarity=0.133 Sum_probs=115.5
Q ss_pred EEeecCCe---EEEEeCC-CCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEEC--CCCE
Q 001380 607 AIDILNNR---LFISDSN-HNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADT--ENHA 680 (1089)
Q Consensus 607 avd~~~g~---L~vsd~~-~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~--~n~~ 680 (1089)
+++|++.+ +|++..+ ...|++.+.+|.....+... .. .....+++|+|+.|.++-. ++..
T Consensus 191 ~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~-~g-------------~~~~p~wSPDG~~Laf~s~~~g~~d 256 (428)
T PRK01029 191 TWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILAL-QG-------------NQLMPTFSPRKKLLAFISDRYGNPD 256 (428)
T ss_pred eEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecC-CC-------------CccceEECCCCCEEEEEECCCCCcc
Confidence 66774433 4577643 45799999886544444332 10 1235688999976665532 3334
Q ss_pred EEE--EECCC---CeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEEC--CCcEEEEEECCC--CeEE
Q 001380 681 LRE--IDFVN---DTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMA--GQHQIWEHSTVD--GVTR 751 (1089)
Q Consensus 681 I~~--~d~~~---g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~--~~~~I~~~~~~~--g~~~ 751 (1089)
|+. +++.+ +..+.+.... .......+|+|+|..|+++.. +..+||.++... +..+
T Consensus 257 i~~~~~~~~~g~~g~~~~lt~~~----------------~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~ 320 (428)
T PRK01029 257 LFIQSFSLETGAIGKPRRLLNEA----------------FGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPR 320 (428)
T ss_pred eeEEEeecccCCCCcceEeecCC----------------CCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceE
Confidence 443 45443 2333332110 012234689999987766543 345788887642 3333
Q ss_pred EEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCC--CCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCC
Q 001380 752 AFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSE--SSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDG 829 (1089)
Q Consensus 752 ~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~--~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg 829 (1089)
.+...+ ......+++|||+.|+++... ...|+.+++.++..+.+..+.
T Consensus 321 ~lt~~~---------------~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~--------------- 370 (428)
T PRK01029 321 LLTKKY---------------RNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSP--------------- 370 (428)
T ss_pred EeccCC---------------CCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCC---------------
Confidence 332111 122356789999888766443 357999999888776653211
Q ss_pred ccccccccCceEEEEccCCc-EEEEeC--CCCEEEEEeCCCCeEEEEe
Q 001380 830 MGSEVLLQHPLGVYCAKNGQ-IYVADS--YNHKIKKLDPASNRVSTLA 874 (1089)
Q Consensus 830 ~~~~~~l~~P~gva~~~~G~-lyVaD~--~n~~I~~~d~~~~~v~t~~ 874 (1089)
.......+++||+ |+++.. +...|..+|.+++....+.
T Consensus 371 -------~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt 411 (428)
T PRK01029 371 -------ENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIV 411 (428)
T ss_pred -------CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee
Confidence 0123467888885 554432 3467889999888777765
No 388
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=97.64 E-value=8e-05 Score=82.39 Aligned_cols=69 Identities=9% Similarity=0.012 Sum_probs=51.0
Q ss_pred ccCCCCCHHHHHHHHHHcCC---CCCcEEEEcCChhhHHHHHHcCCeEEEEcCCC-C-H-HHHh--hcCCcEEecCcccC
Q 001380 218 FENLKPAPDIFLSASKILNV---PTSECIVIEDALAGVQAAKAAQMRCIAVTTTL-S-E-ERLK--EASPSLIRKEIGSV 289 (1089)
Q Consensus 218 ~~~~KP~~~~~~~~l~~lgv---~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~-~-~-~~l~--~~~~d~vi~dl~el 289 (1089)
...+-.|...++.+++.+|+ ++++++.|||+.||+.|-+.+|. .|..+. . . +.+. ...++++.....+=
T Consensus 182 ~~~g~sKg~al~~l~~~lgi~~~~~~~viafGDs~NDi~Ml~~ag~---gvAM~~~~~~~~~l~~~~~~~~~~~~~~~~~ 258 (271)
T PRK03669 182 LDASAGKDQAANWLIATYQQLSGTRPTTLGLGDGPNDAPLLDVMDY---AVVVKGLNREGVHLQDDDPARVYRTQREGPE 258 (271)
T ss_pred ecCCCCHHHHHHHHHHHHHhhcCCCceEEEEcCCHHHHHHHHhCCE---EEEecCCCCCCcccccccCCceEeccCCCcH
Confidence 44567788999999999999 99999999999999999999994 344432 1 2 2332 23567776665543
No 389
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.63 E-value=0.0094 Score=65.53 Aligned_cols=154 Identities=14% Similarity=0.124 Sum_probs=111.7
Q ss_pred cceeEEeeCCCEEEEEECCCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCc
Q 001380 659 PQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQH 738 (1089)
Q Consensus 659 P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~ 738 (1089)
..-|.++|+.++ .+|-.....++.+|.++|......+.|. + .++...+|.|+| .=+|+.....
T Consensus 272 V~yi~wSPDdry-LlaCg~~e~~~lwDv~tgd~~~~y~~~~-~--------------~S~~sc~W~pDg-~~~V~Gs~dr 334 (519)
T KOG0293|consen 272 VSYIMWSPDDRY-LLACGFDEVLSLWDVDTGDLRHLYPSGL-G--------------FSVSSCAWCPDG-FRFVTGSPDR 334 (519)
T ss_pred eEEEEECCCCCe-EEecCchHheeeccCCcchhhhhcccCc-C--------------CCcceeEEccCC-ceeEecCCCC
Confidence 356788999884 4454455568899999988888776552 1 378899999999 5578877788
Q ss_pred EEEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCC
Q 001380 739 QIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFP 818 (1089)
Q Consensus 739 ~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~ 818 (1089)
+|..+|.++.....+.|.. ...-++|++++||+.++..+ ....|+.++..+..-+-+..
T Consensus 335 ~i~~wdlDgn~~~~W~gvr--------------~~~v~dlait~Dgk~vl~v~-~d~~i~l~~~e~~~dr~lis------ 393 (519)
T KOG0293|consen 335 TIIMWDLDGNILGNWEGVR--------------DPKVHDLAITYDGKYVLLVT-VDKKIRLYNREARVDRGLIS------ 393 (519)
T ss_pred cEEEecCCcchhhcccccc--------------cceeEEEEEcCCCcEEEEEe-cccceeeechhhhhhhcccc------
Confidence 9999998887766666432 12357999999999998877 45678888766432221111
Q ss_pred CCccccCCCCCccccccccC-ceEEEEccCCcEEEEeCCCCEEEEEeCCC
Q 001380 819 DNLFKFGDRDGMGSEVLLQH-PLGVYCAKNGQIYVADSYNHKIKKLDPAS 867 (1089)
Q Consensus 819 ~~l~~~g~~dg~~~~~~l~~-P~gva~~~~G~lyVaD~~n~~I~~~d~~~ 867 (1089)
..+ -..+.++.+|++...+-.++.|...|.+.
T Consensus 394 -----------------e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e 426 (519)
T KOG0293|consen 394 -----------------EEQPITSFSISKDGKLALVNLQDQEIHLWDLEE 426 (519)
T ss_pred -----------------ccCceeEEEEcCCCcEEEEEcccCeeEEeecch
Confidence 122 35778889999999999999999998753
No 390
>PTZ00421 coronin; Provisional
Probab=97.63 E-value=0.049 Score=65.17 Aligned_cols=206 Identities=8% Similarity=0.068 Sum_probs=122.7
Q ss_pred CceEEEeecCCeEEEEeCCCCEEEEEeCCCC--------EEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEE
Q 001380 603 PGKLAIDILNNRLFISDSNHNRIVVTDLDGN--------FIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVA 674 (1089)
Q Consensus 603 P~~vavd~~~g~L~vsd~~~~~I~~~~~~g~--------~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVa 674 (1089)
-..++++|.+++++++-+..+.|.+|+.... .+..+.+. -.....++++|.++.++++
T Consensus 78 V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH--------------~~~V~~l~f~P~~~~iLaS 143 (493)
T PTZ00421 78 IIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGH--------------TKKVGIVSFHPSAMNVLAS 143 (493)
T ss_pred EEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCC--------------CCcEEEEEeCcCCCCEEEE
Confidence 4568888766777777778899999986522 12222111 1235678999876436666
Q ss_pred ECCCCEEEEEECCCCeEEE-EecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEE-E
Q 001380 675 DTENHALREIDFVNDTVRT-LAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTR-A 752 (1089)
Q Consensus 675 D~~n~~I~~~d~~~g~v~~-~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~-~ 752 (1089)
-..++.|+.+|+.++.... +.+.. ....+++|+++| .++++....+.|..||+.++... .
T Consensus 144 gs~DgtVrIWDl~tg~~~~~l~~h~-----------------~~V~sla~spdG-~lLatgs~Dg~IrIwD~rsg~~v~t 205 (493)
T PTZ00421 144 AGADMVVNVWDVERGKAVEVIKCHS-----------------DQITSLEWNLDG-SLLCTTSKDKKLNIIDPRDGTIVSS 205 (493)
T ss_pred EeCCCEEEEEECCCCeEEEEEcCCC-----------------CceEEEEEECCC-CEEEEecCCCEEEEEECCCCcEEEE
Confidence 6678899999998765433 32111 245789999988 55666667889999999877543 3
Q ss_pred EeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEe---CCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCC
Q 001380 753 FSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVAD---SESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDG 829 (1089)
Q Consensus 753 ~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad---~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg 829 (1089)
+.+... .....+.+.++++.++.+. +..+.|+.++.......... .... .
T Consensus 206 l~~H~~--------------~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~----------~~~d---~ 258 (493)
T PTZ00421 206 VEAHAS--------------AKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYST----------VDLD---Q 258 (493)
T ss_pred EecCCC--------------CcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeE----------eccC---C
Confidence 332110 0122445566664555433 23467888887642211000 0000 0
Q ss_pred ccccccccCceEEEEccCCc-EEEEeCCCCEEEEEeCCCCeEEEE
Q 001380 830 MGSEVLLQHPLGVYCAKNGQ-IYVADSYNHKIKKLDPASNRVSTL 873 (1089)
Q Consensus 830 ~~~~~~l~~P~gva~~~~G~-lyVaD~~n~~I~~~d~~~~~v~t~ 873 (1089)
-.......++++++ +|++..+.+.|+.+|..++.+...
T Consensus 259 ------~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~ 297 (493)
T PTZ00421 259 ------SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFC 297 (493)
T ss_pred ------CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEE
Confidence 00112345788886 556655688999999877765443
No 391
>KOG2630 consensus Enolase-phosphatase E-1 [Amino acid transport and metabolism]
Probab=97.63 E-value=0.00098 Score=67.96 Aligned_cols=105 Identities=14% Similarity=0.141 Sum_probs=82.4
Q ss_pred CCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCc-cCCCCCHHHHHHHHHHcCCCCCc
Q 001380 163 SGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAF-ENLKPAPDIFLSASKILNVPTSE 241 (1089)
Q Consensus 163 ~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~-~~~KP~~~~~~~~l~~lgv~p~~ 241 (1089)
..+.++++...++..+..|++++|.|+++....+.+...-+-. ++-..+-+--+. --.|-....|..+.+.+|.++.+
T Consensus 121 k~~v~aDv~~a~e~w~~~g~~vyIYSSgsv~AqKllfg~s~~g-dl~~y~~gyfDt~iG~K~e~~sy~~I~~~Ig~s~~e 199 (254)
T KOG2630|consen 121 KAHVYADVLPAIERWSGEGVRVYIYSSGSVAAQKLLFGYSDAG-DLRKYISGYFDTTIGLKVESQSYKKIGHLIGKSPRE 199 (254)
T ss_pred cccccchhHHHHHHHhhcCceEEEEcCCcHHHHHHHHcccCcc-hHHHHhhhhhhccccceehhHHHHHHHHHhCCChhh
Confidence 3478999999999999999999999999988877776655332 222222221111 12466778999999999999999
Q ss_pred EEEEcCChhhHHHHHHcCCeEEEEcCC
Q 001380 242 CIVIEDALAGVQAAKAAQMRCIAVTTT 268 (1089)
Q Consensus 242 ~v~VGD~~~Di~aA~~aG~~~i~V~~g 268 (1089)
+++.-|-..-..+|+.+|+.+.++-+.
T Consensus 200 iLfLTd~~~Ea~aa~~aGl~a~l~~rP 226 (254)
T KOG2630|consen 200 ILFLTDVPREAAAARKAGLQAGLVSRP 226 (254)
T ss_pred eEEeccChHHHHHHHhcccceeeeecC
Confidence 999999999999999999988887663
No 392
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=97.62 E-value=0.0005 Score=65.57 Aligned_cols=90 Identities=14% Similarity=0.087 Sum_probs=72.9
Q ss_pred EEEEEEec--CCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHhC
Q 001380 455 VVVLDFWT--YCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRELG 532 (1089)
Q Consensus 455 ~vll~Fwa--~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~~ 532 (1089)
..||.|-+ --++-+....-.|.+|.++|.+..+.+.-|.. |.+.+++.+||
T Consensus 36 ~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDi---------------------------D~~~~LA~~fg 88 (132)
T PRK11509 36 DGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADL---------------------------EQSEAIGDRFG 88 (132)
T ss_pred cEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEEC---------------------------CCCHHHHHHcC
Confidence 34444432 35666777788889999999754577777754 67889999999
Q ss_pred CCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHHHh
Q 001380 533 VNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALLFY 572 (1089)
Q Consensus 533 v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~~~ 572 (1089)
|.++||++++ ++|+.+.+..|....+++.++|++++..-
T Consensus 89 V~siPTLl~F-kdGk~v~~i~G~~~k~~l~~~I~~~L~~~ 127 (132)
T PRK11509 89 VFRFPATLVF-TGGNYRGVLNGIHPWAELINLMRGLVEPQ 127 (132)
T ss_pred CccCCEEEEE-ECCEEEEEEeCcCCHHHHHHHHHHHhcCc
Confidence 9999999999 99999999999999999999999888643
No 393
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=97.62 E-value=0.0045 Score=68.27 Aligned_cols=238 Identities=14% Similarity=0.147 Sum_probs=153.6
Q ss_pred CceEEEeecCCeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCC-CEEEEEECCCCE
Q 001380 603 PGKLAIDILNNRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKK-NLLYVADTENHA 680 (1089)
Q Consensus 603 P~~vavd~~~g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g-~~lyVaD~~n~~ 680 (1089)
|...+.-..++.++++-+-.|.+.+++.. ++.+.++.+. . .+-.++.+.|.- +.-.++-...+.
T Consensus 177 Pis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH-~-------------~~v~~~~fhP~~~~~~lat~s~Dgt 242 (459)
T KOG0272|consen 177 PISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGH-T-------------SRVGAAVFHPVDSDLNLATASADGT 242 (459)
T ss_pred cceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEecc-c-------------cceeeEEEccCCCccceeeeccCCc
Confidence 33334333478888888888888888654 6666666554 2 245678888762 312344445666
Q ss_pred EEEEECCC-CeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCcc
Q 001380 681 LREIDFVN-DTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYE 759 (1089)
Q Consensus 681 I~~~d~~~-g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~ 759 (1089)
++.++.++ ..+..+-|. +..-..++|+|+| ....+....+.-+.||..++...... .
T Consensus 243 vklw~~~~e~~l~~l~gH-----------------~~RVs~VafHPsG-~~L~TasfD~tWRlWD~~tk~ElL~Q-E--- 300 (459)
T KOG0272|consen 243 VKLWKLSQETPLQDLEGH-----------------LARVSRVAFHPSG-KFLGTASFDSTWRLWDLETKSELLLQ-E--- 300 (459)
T ss_pred eeeeccCCCcchhhhhcc-----------------hhhheeeeecCCC-ceeeecccccchhhcccccchhhHhh-c---
Confidence 77776655 333344332 2355679999999 44455444555555666554322221 0
Q ss_pred ccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEE-EecCCCCCCCCccccCCCCCccccccccC
Q 001380 760 RNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRL-LAGGDPIFPDNLFKFGDRDGMGSEVLLQH 838 (1089)
Q Consensus 760 ~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~-~~g~~~~~~~~l~~~g~~dg~~~~~~l~~ 838 (1089)
+.-..-.+|++.+|| .|..+-...+.=|++|+.+|.... ++|. +..
T Consensus 301 ----------GHs~~v~~iaf~~DG-SL~~tGGlD~~~RvWDlRtgr~im~L~gH----------------------~k~ 347 (459)
T KOG0272|consen 301 ----------GHSKGVFSIAFQPDG-SLAATGGLDSLGRVWDLRTGRCIMFLAGH----------------------IKE 347 (459)
T ss_pred ----------ccccccceeEecCCC-ceeeccCccchhheeecccCcEEEEeccc----------------------ccc
Confidence 111235689999999 787776666666777887766543 3332 334
Q ss_pred ceEEEEccCCcEEEEeCCCCEEEEEeCCCCe-EEEEeccCCCCCCCCcccccccCCCceEEEcc-CCcEEEEECCCCEEE
Q 001380 839 PLGVYCAKNGQIYVADSYNHKIKKLDPASNR-VSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQ-NGNLFIADTNNNIIR 916 (1089)
Q Consensus 839 P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~-v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~-~G~lyVad~~n~~I~ 916 (1089)
-.+|+++|+|....+-+..+.+++.|..... +.++.+ .-+.-+.+++.+ .|..+++-...+.+.
T Consensus 348 I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipA--------------H~nlVS~Vk~~p~~g~fL~TasyD~t~k 413 (459)
T KOG0272|consen 348 ILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPA--------------HSNLVSQVKYSPQEGYFLVTASYDNTVK 413 (459)
T ss_pred eeeEeECCCceEEeecCCCCcEEEeeecccccceeccc--------------ccchhhheEecccCCeEEEEcccCccee
Confidence 6789999999999999999999999875432 344432 456678899997 677888888889998
Q ss_pred EEeCCCC
Q 001380 917 YLDLNKE 923 (1089)
Q Consensus 917 ~~~~~~~ 923 (1089)
++...+-
T Consensus 414 iWs~~~~ 420 (459)
T KOG0272|consen 414 IWSTRTW 420 (459)
T ss_pred eecCCCc
Confidence 8876664
No 394
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=97.61 E-value=0.0015 Score=73.02 Aligned_cols=235 Identities=12% Similarity=0.190 Sum_probs=159.2
Q ss_pred eecCCeEEEEeCCCCEEEEEeC--CCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEEEEEC
Q 001380 609 DILNNRLFISDSNHNRIVVTDL--DGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREIDF 686 (1089)
Q Consensus 609 d~~~g~L~vsd~~~~~I~~~~~--~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~~d~ 686 (1089)
-|..+.|+.+-...+.|.+++. +++.++++-+. .. --..++++.+|. -+.+-.....|..+|.
T Consensus 223 fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH-~k-------------~Vrd~~~s~~g~-~fLS~sfD~~lKlwDt 287 (503)
T KOG0282|consen 223 FPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGH-RK-------------PVRDASFNNCGT-SFLSASFDRFLKLWDT 287 (503)
T ss_pred ccceeeEEEecCCCceEEEEEEecCcceehhhhcc-hh-------------hhhhhhccccCC-eeeeeecceeeeeecc
Confidence 3446788989888899998875 47788776654 22 125677777787 4566566788999999
Q ss_pred CCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEE-EEeCCCccccCCCC
Q 001380 687 VNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTR-AFSGDGYERNLNGS 765 (1089)
Q Consensus 687 ~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~-~~~g~g~~~~~~g~ 765 (1089)
++|.+..-...+. -|..+-++|++..+|++...+.+|..||..++.+. .+.
T Consensus 288 ETG~~~~~f~~~~-----------------~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd----------- 339 (503)
T KOG0282|consen 288 ETGQVLSRFHLDK-----------------VPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYD----------- 339 (503)
T ss_pred ccceEEEEEecCC-----------------CceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHH-----------
Confidence 9998887765443 57889999999899999999999999998776532 111
Q ss_pred CCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEc
Q 001380 766 SSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCA 845 (1089)
Q Consensus 766 ~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~ 845 (1089)
..+..-..|.+-++| .-||+.+..++++.++-......-. .....+...| .++..
T Consensus 340 ----~hLg~i~~i~F~~~g-~rFissSDdks~riWe~~~~v~ik~-------------------i~~~~~hsmP-~~~~~ 394 (503)
T KOG0282|consen 340 ----RHLGAILDITFVDEG-RRFISSSDDKSVRIWENRIPVPIKN-------------------IADPEMHTMP-CLTLH 394 (503)
T ss_pred ----hhhhheeeeEEccCC-ceEeeeccCccEEEEEcCCCccchh-------------------hcchhhccCc-ceecC
Confidence 122334578888877 8889999999999987553221100 0111122333 46778
Q ss_pred cCCcEEEEeCCCCEEEEEeCCCC----eEEEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEEEEeCC
Q 001380 846 KNGQIYVADSYNHKIKKLDPASN----RVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLDLN 921 (1089)
Q Consensus 846 ~~G~lyVaD~~n~~I~~~d~~~~----~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~~~~ 921 (1089)
|+|..+.+.+..++|..+...-. .-..+.|.-.+|| +..+.+.+||..+++...++++..++-+
T Consensus 395 P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGy------------s~~v~fSpDG~~l~SGdsdG~v~~wdwk 462 (503)
T KOG0282|consen 395 PNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGY------------SCQVDFSPDGRTLCSGDSDGKVNFWDWK 462 (503)
T ss_pred CCCCeehhhccCceEEEEecccccccCHhhhhcceeccCc------------eeeEEEcCCCCeEEeecCCccEEEeech
Confidence 89999999999999988854221 2233334333332 4456666777777777777777777766
Q ss_pred CC
Q 001380 922 KE 923 (1089)
Q Consensus 922 ~~ 923 (1089)
+-
T Consensus 463 t~ 464 (503)
T KOG0282|consen 463 TT 464 (503)
T ss_pred hh
Confidence 53
No 395
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=97.60 E-value=0.0017 Score=71.56 Aligned_cols=193 Identities=13% Similarity=0.108 Sum_probs=133.4
Q ss_pred CCCceEEEeecCCeEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCE
Q 001380 601 KFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHA 680 (1089)
Q Consensus 601 ~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~ 680 (1089)
..-..+++.| +|++..+-+..+.-..+|...+.......+.. ....++++.++|. |..+..-...
T Consensus 262 ~RVs~VafHP-sG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs-------------~~v~~iaf~~DGS-L~~tGGlD~~ 326 (459)
T KOG0272|consen 262 ARVSRVAFHP-SGKFLGTASFDSTWRLWDLETKSELLLQEGHS-------------KGVFSIAFQPDGS-LAATGGLDSL 326 (459)
T ss_pred hhheeeeecC-CCceeeecccccchhhcccccchhhHhhcccc-------------cccceeEecCCCc-eeeccCccch
Confidence 4455688987 88888888777777778776433221111111 2357899999998 6666554555
Q ss_pred EEEEECCCCe-EEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeE-EEEeCCCc
Q 001380 681 LREIDFVNDT-VRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVT-RAFSGDGY 758 (1089)
Q Consensus 681 I~~~d~~~g~-v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~-~~~~g~g~ 758 (1089)
-|++|+.+|. +-.++|.. ..-.+|+|+|+| +...+..+.+++.+||+..... ..+.
T Consensus 327 ~RvWDlRtgr~im~L~gH~-----------------k~I~~V~fsPNG-y~lATgs~Dnt~kVWDLR~r~~ly~ip---- 384 (459)
T KOG0272|consen 327 GRVWDLRTGRCIMFLAGHI-----------------KEILSVAFSPNG-YHLATGSSDNTCKVWDLRMRSELYTIP---- 384 (459)
T ss_pred hheeecccCcEEEEecccc-----------------cceeeEeECCCc-eEEeecCCCCcEEEeeecccccceecc----
Confidence 5788988765 55555432 356789999988 8889988889888888764332 2222
Q ss_pred cccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCC-eEEEecCCCCCCCCccccCCCCCcccccccc
Q 001380 759 ERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGG-SRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQ 837 (1089)
Q Consensus 759 ~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~-~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~ 837 (1089)
+.-+--+.+.++|+.++..++.+..+++..++..+.. ++.++|.. .
T Consensus 385 -----------AH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe----------------------~ 431 (459)
T KOG0272|consen 385 -----------AHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHE----------------------G 431 (459)
T ss_pred -----------cccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCc----------------------c
Confidence 2333467899998767999999999999999877543 34555542 1
Q ss_pred CceEEEEccCCcEEEEeCCCCEEEEE
Q 001380 838 HPLGVYCAKNGQIYVADSYNHKIKKL 863 (1089)
Q Consensus 838 ~P~gva~~~~G~lyVaD~~n~~I~~~ 863 (1089)
.-.++.+.+||...++-++.+.|+-.
T Consensus 432 kV~s~Dis~d~~~i~t~s~DRT~KLW 457 (459)
T KOG0272|consen 432 KVISLDISPDSQAIATSSFDRTIKLW 457 (459)
T ss_pred ceEEEEeccCCceEEEeccCceeeec
Confidence 35678888999988888888877654
No 396
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=97.60 E-value=0.00068 Score=72.41 Aligned_cols=98 Identities=17% Similarity=0.200 Sum_probs=63.9
Q ss_pred CCCCccHHHHHHHHHhCCCeEEEEcCCCh---HhHHHHHHHCCCCCCCccEEEEcCCccCCCC-----CHHHHHHHHHHc
Q 001380 164 GIGFPGALELINQCKSKGLKVAVASSADR---IKVDANLAAAGLPVSMFDAIVSADAFENLKP-----APDIFLSASKIL 235 (1089)
Q Consensus 164 ~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~---~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP-----~~~~~~~~l~~l 235 (1089)
.+..|++.++.+.++++|++|+++||+.. +.+...|++.|+. .+ +.++-.......+. |.+...+.. +-
T Consensus 144 ApAlp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT~~NL~kaGy~-~~-~~LiLR~~~D~~~~~av~yKs~~R~~li-~e 220 (275)
T TIGR01680 144 APALPETLKNYNKLVSLGFKIIFLSGRLKDKQAVTEANLKKAGYH-TW-EKLILKDPQDNSAENAVEYKTAARAKLI-QE 220 (275)
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHHcCCC-Cc-ceeeecCCCCCccchhHHHHHHHHHHHH-Hc
Confidence 37899999999999999999999999854 5567778888985 43 55555433221222 222222222 22
Q ss_pred CCCCCcEEEEcCChhhHHHHHHcCCeEEEEc
Q 001380 236 NVPTSECIVIEDALAGVQAAKAAQMRCIAVT 266 (1089)
Q Consensus 236 gv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~ 266 (1089)
|. .=+..|||.++|+.+....+.+++-.-
T Consensus 221 GY--rIv~~iGDq~sDl~G~~~g~~RtFKLP 249 (275)
T TIGR01680 221 GY--NIVGIIGDQWNDLKGEHRGAIRSFKLP 249 (275)
T ss_pred Cc--eEEEEECCCHHhccCCCccCcceecCC
Confidence 33 337899999999976653334655543
No 397
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.59 E-value=0.0054 Score=65.52 Aligned_cols=168 Identities=18% Similarity=0.193 Sum_probs=104.9
Q ss_pred CCCceEEEeecCCeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCC
Q 001380 601 KFPGKLAIDILNNRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENH 679 (1089)
Q Consensus 601 ~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~ 679 (1089)
.|-.|+++- +++||.---.++..+++|.+ -+.+.++.-.++ -.||+. +|..||++|. ++
T Consensus 90 ~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~~E---------------GWGLt~--dg~~Li~SDG-S~ 149 (264)
T PF05096_consen 90 YFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKKIGTFPYPGE---------------GWGLTS--DGKRLIMSDG-SS 149 (264)
T ss_dssp --EEEEEEE--TTEEEEEESSSSEEEEEETTTTEEEEEEE-SSS-----------------EEEE--CSSCEEEE-S-SS
T ss_pred ccceeEEEE--CCEEEEEEecCCeEEEEccccceEEEEEecCCc---------------ceEEEc--CCCEEEEECC-cc
Confidence 477889986 78999999999999999997 455556655432 279995 4666999995 78
Q ss_pred EEEEEECCCC-eEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCC-C
Q 001380 680 ALREIDFVND-TVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGD-G 757 (1089)
Q Consensus 680 ~I~~~d~~~g-~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~-g 757 (1089)
+|+.+|+++- .+.++.-+ ..+ .++..-+-|-+- ++.||.--+.++.|.++|+.+|.+..+..- +
T Consensus 150 ~L~~~dP~~f~~~~~i~V~-~~g-----------~pv~~LNELE~i--~G~IyANVW~td~I~~Idp~tG~V~~~iDls~ 215 (264)
T PF05096_consen 150 RLYFLDPETFKEVRTIQVT-DNG-----------RPVSNLNELEYI--NGKIYANVWQTDRIVRIDPETGKVVGWIDLSG 215 (264)
T ss_dssp EEEEE-TTT-SEEEEEE-E-ETT-----------EE---EEEEEEE--TTEEEEEETTSSEEEEEETTT-BEEEEEE-HH
T ss_pred ceEEECCcccceEEEEEEE-ECC-----------EECCCcEeEEEE--cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhH
Confidence 9999999874 33333211 111 224455666665 359999999999999999999988765421 1
Q ss_pred ccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEc
Q 001380 758 YERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNL 802 (1089)
Q Consensus 758 ~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~ 802 (1089)
-.............-.-.+|||.+++++++||+--.=..++.+.+
T Consensus 216 L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~Wp~lyeV~l 260 (264)
T PF05096_consen 216 LRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKLWPKLYEVKL 260 (264)
T ss_dssp HHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT-SEEEEEEE
T ss_pred hhhcccccccccccCCeeEeEeEeCCCCEEEEEeCCCCceEEEEE
Confidence 110000000001123346899999999999999765566766654
No 398
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=97.58 E-value=0.028 Score=58.10 Aligned_cols=233 Identities=12% Similarity=0.076 Sum_probs=144.1
Q ss_pred eEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEEEEECCCCeEE
Q 001380 614 RLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTVR 692 (1089)
Q Consensus 614 ~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~v~ 692 (1089)
-+.++-...|.|..+... |.-.++|.... .....|.+.|++..|-+ .++..||.+|+.++.-.
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~d--------------sqVNrLeiTpdk~~LAa--a~~qhvRlyD~~S~np~ 74 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPD--------------SQVNRLEITPDKKDLAA--AGNQHVRLYDLNSNNPN 74 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCc--------------cceeeEEEcCCcchhhh--ccCCeeEEEEccCCCCC
Confidence 466777888999999765 88888887652 25678999999884444 45888999998765433
Q ss_pred EEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCccccCCCCCCCCccc
Q 001380 693 TLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSF 772 (1089)
Q Consensus 693 ~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~ 772 (1089)
.++..- ..-.+-..|.|..+|..+| +....+.+..||...-.+.+.- .+
T Consensus 75 Pv~t~e--------------~h~kNVtaVgF~~dgrWMy-TgseDgt~kIWdlR~~~~qR~~----------------~~ 123 (311)
T KOG0315|consen 75 PVATFE--------------GHTKNVTAVGFQCDGRWMY-TGSEDGTVKIWDLRSLSCQRNY----------------QH 123 (311)
T ss_pred ceeEEe--------------ccCCceEEEEEeecCeEEE-ecCCCceEEEEeccCcccchhc----------------cC
Confidence 332110 0112567788888886555 4445666777776553333221 11
Q ss_pred cC-CceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeE-EEecCCCCCCCCccccCCCCCccccccccCceEEEEccCCcE
Q 001380 773 AQ-PSGISLSPDFMEIYVADSESSSIRALNLKTGGSR-LLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQI 850 (1089)
Q Consensus 773 ~~-P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~-~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~l 850 (1089)
.. -+.+.++|.-..|++.|. ++.|+++|+....-. .+.. + . ...-..+++.+||..
T Consensus 124 ~spVn~vvlhpnQteLis~dq-sg~irvWDl~~~~c~~~liP------e-------~--------~~~i~sl~v~~dgsm 181 (311)
T KOG0315|consen 124 NSPVNTVVLHPNQTELISGDQ-SGNIRVWDLGENSCTHELIP------E-------D--------DTSIQSLTVMPDGSM 181 (311)
T ss_pred CCCcceEEecCCcceEEeecC-CCcEEEEEccCCccccccCC------C-------C--------CcceeeEEEcCCCcE
Confidence 11 357888887669999985 688999998754221 1110 0 0 123457888899988
Q ss_pred EEEeCCCCEEEEEeCCCC-eEEEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEEEEeCCCC
Q 001380 851 YVADSYNHKIKKLDPASN-RVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLDLNKE 923 (1089)
Q Consensus 851 yVaD~~n~~I~~~d~~~~-~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~~~~~~ 923 (1089)
.+|-...++.++.+.-++ ..+.+...-.. .+.-..-.-..+.++++.+++.+..+.+.+++.++-
T Consensus 182 l~a~nnkG~cyvW~l~~~~~~s~l~P~~k~--------~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~ 247 (311)
T KOG0315|consen 182 LAAANNKGNCYVWRLLNHQTASELEPVHKF--------QAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF 247 (311)
T ss_pred EEEecCCccEEEEEccCCCccccceEhhhe--------ecccceEEEEEECCCCcEEEeecCCceEEEEecCCc
Confidence 888777777777765332 22222211000 001111222346788888888888999999988774
No 399
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=97.57 E-value=0.00029 Score=88.51 Aligned_cols=115 Identities=17% Similarity=0.156 Sum_probs=81.2
Q ss_pred CCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCcE
Q 001380 163 SGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSEC 242 (1089)
Q Consensus 163 ~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~ 242 (1089)
..+++||+.+.+++|+++|++++++|+.+...++.+.+++|+. .+++ ..| +--..++++++ ...++
T Consensus 566 ~d~~r~~a~~~i~~L~~~gi~~~llTGd~~~~a~~ia~~lgi~-~~~~----------~~p--~~K~~~v~~l~-~~~~v 631 (741)
T PRK11033 566 QDTLRADARQAISELKALGIKGVMLTGDNPRAAAAIAGELGID-FRAG----------LLP--EDKVKAVTELN-QHAPL 631 (741)
T ss_pred ecCCchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCC-eecC----------CCH--HHHHHHHHHHh-cCCCE
Confidence 3477999999999999999999999999999999999999995 3221 122 22223455555 34689
Q ss_pred EEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEe--cCcccCCHHHHHhc
Q 001380 243 IVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIR--KEIGSVSLNDILTG 297 (1089)
Q Consensus 243 v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi--~dl~el~i~~ll~~ 297 (1089)
+||||+.||..+.+.++ ++|..|...+...+ .+|.++ +++..| .+++..
T Consensus 632 ~mvGDgiNDapAl~~A~---vgia~g~~~~~a~~-~adivl~~~~l~~l--~~~i~~ 682 (741)
T PRK11033 632 AMVGDGINDAPAMKAAS---IGIAMGSGTDVALE-TADAALTHNRLRGL--AQMIEL 682 (741)
T ss_pred EEEECCHHhHHHHHhCC---eeEEecCCCHHHHH-hCCEEEecCCHHHH--HHHHHH
Confidence 99999999999999999 66666543333222 255554 455554 444443
No 400
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.57 E-value=0.063 Score=58.79 Aligned_cols=255 Identities=13% Similarity=0.150 Sum_probs=141.6
Q ss_pred ceEEEeecCCe-EEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEEC----C
Q 001380 604 GKLAIDILNNR-LFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADT----E 677 (1089)
Q Consensus 604 ~~vavd~~~g~-L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~----~ 677 (1089)
.+++++|.... +.++-.-..-.+++|.. |+....+...... .|+ ---+++++|+.||.+.+ +
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gR----------HFy--GHg~fs~dG~~LytTEnd~~~g 75 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGR----------HFY--GHGVFSPDGRLLYTTENDYETG 75 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCC----------EEe--cCEEEcCCCCEEEEeccccCCC
Confidence 45666663333 33444444456677776 5555454433111 122 23357889999999954 4
Q ss_pred CCEEEEEECCCC--eEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEE-----EEEECCC--C
Q 001380 678 NHALREIDFVND--TVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQI-----WEHSTVD--G 748 (1089)
Q Consensus 678 n~~I~~~d~~~g--~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I-----~~~~~~~--g 748 (1089)
.+.|-++|...+ ++..+...|. .|+.|.+.|+|..|.|++.|-..- .++|+++ .
T Consensus 76 ~G~IgVyd~~~~~~ri~E~~s~GI-----------------GPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~p 138 (305)
T PF07433_consen 76 RGVIGVYDAARGYRRIGEFPSHGI-----------------GPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQP 138 (305)
T ss_pred cEEEEEEECcCCcEEEeEecCCCc-----------------ChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCC
Confidence 568889998733 3334444332 699999999999999998773211 1222222 1
Q ss_pred eEEEE-eCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCe-------EEEEEcCCCCeEEEecCCCCCCCC
Q 001380 749 VTRAF-SGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSS-------IRALNLKTGGSRLLAGGDPIFPDN 820 (1089)
Q Consensus 749 ~~~~~-~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~-------I~~~~~~~~~~~~~~g~~~~~~~~ 820 (1089)
.+..+ ..+|.....-- .+....-..-..|+++++| .++++....+. |..++.. +..+.+
T Consensus 139 sL~~ld~~sG~ll~q~~-Lp~~~~~lSiRHLa~~~~G-~V~~a~Q~qg~~~~~~PLva~~~~g-~~~~~~---------- 205 (305)
T PF07433_consen 139 SLVYLDARSGALLEQVE-LPPDLHQLSIRHLAVDGDG-TVAFAMQYQGDPGDAPPLVALHRRG-GALRLL---------- 205 (305)
T ss_pred ceEEEecCCCceeeeee-cCccccccceeeEEecCCC-cEEEEEecCCCCCccCCeEEEEcCC-Ccceec----------
Confidence 22222 22221110000 0000111134578888887 77776543321 1111111 111111
Q ss_pred ccccCCCCCccccccc-cCceEEEEccCCc-EEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEE
Q 001380 821 LFKFGDRDGMGSEVLL-QHPLGVYCAKNGQ-IYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGII 898 (1089)
Q Consensus 821 l~~~g~~dg~~~~~~l-~~P~gva~~~~G~-lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~ 898 (1089)
..... ....| ++--+|+++.+|. +.++-...+++..+|.+++.+.... .+..-.|++
T Consensus 206 --~~p~~----~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~---------------~l~D~cGva 264 (305)
T PF07433_consen 206 --PAPEE----QWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSV---------------PLPDACGVA 264 (305)
T ss_pred --cCChH----HHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecc---------------ccCceeeee
Confidence 11100 01122 3456799998885 7788888999999998888776654 355567888
Q ss_pred EccCCcEEEEECCCCEEEEEeCCCC
Q 001380 899 EAQNGNLFIADTNNNIIRYLDLNKE 923 (1089)
Q Consensus 899 vd~~G~lyVad~~n~~I~~~~~~~~ 923 (1089)
...++ |++.++.+.+..++..+.
T Consensus 265 ~~~~~--f~~ssG~G~~~~~~~~~~ 287 (305)
T PF07433_consen 265 PTDDG--FLVSSGQGQLIRLSPDGP 287 (305)
T ss_pred ecCCc--eEEeCCCccEEEccCccc
Confidence 88776 777777888777766554
No 401
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=97.56 E-value=8.5e-05 Score=65.68 Aligned_cols=43 Identities=23% Similarity=0.417 Sum_probs=30.1
Q ss_pred ccCCCEEEEEEecCCCcchhhhhhhH---HHHHHHcCCCCEEEEEEe
Q 001380 450 DLKGKVVVLDFWTYCCINCMHVLPDL---EFLEKKYKDMPFTVVGVH 493 (1089)
Q Consensus 450 ~~~gk~vll~Fwa~wC~~C~~~~p~l---~~l~~~~~~~~v~vi~v~ 493 (1089)
.-.||+++|+|++.||++|+.+-..+ .++.+.+. ++++.+-|.
T Consensus 14 ~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~-~~fv~v~vd 59 (82)
T PF13899_consen 14 KKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALN-KNFVLVKVD 59 (82)
T ss_dssp HHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHH-HCSEEEEEE
T ss_pred HHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHH-CCEEEEEEE
Confidence 34689999999999999999875544 22222222 357788774
No 402
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=97.56 E-value=0.00089 Score=71.62 Aligned_cols=40 Identities=5% Similarity=0.039 Sum_probs=31.9
Q ss_pred CCHHHHHHHHHHcCC--CCCcEEEEcCChhhHHHHHHcCCeE
Q 001380 223 PAPDIFLSASKILNV--PTSECIVIEDALAGVQAAKAAQMRC 262 (1089)
Q Consensus 223 P~~~~~~~~l~~lgv--~p~~~v~VGD~~~Di~aA~~aG~~~ 262 (1089)
-|...+...++.+++ .++++++|||+.||+.|.+.+|+..
T Consensus 181 sK~~al~~l~~~~~~~~~~~~~i~~GD~~nD~~ml~~ag~~v 222 (225)
T TIGR02461 181 DKGKAIKRLLDLYKLRPGAIESVGLGDSENDFPMFEVVDLAF 222 (225)
T ss_pred CHHHHHHHHHHHhccccCcccEEEEcCCHHHHHHHHhCCCcE
Confidence 345566667777765 6679999999999999999999753
No 403
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=97.56 E-value=0.00028 Score=73.58 Aligned_cols=168 Identities=15% Similarity=0.200 Sum_probs=86.2
Q ss_pred eE-EEEecCCcccCCchHHHHHHHHHHHHcCCC--CCHHhHhhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHH
Q 001380 80 SA-VLFDMDGVLCNSEEPSRRAAVDVFAEMGVE--VTVEDFLPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIYLD 156 (1089)
Q Consensus 80 k~-ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (1089)
+. |.+||||||+|....+...++ +.++.. ++.+++..+. ....+.. ...+..+.+.+.+.+
T Consensus 2 ~i~I~iDiDgVLad~~~~~~~~~n---~~~~~~~~~~~~~~~~~~------~~~~~g~-------~~~e~~~~~~~~~~~ 65 (191)
T PF06941_consen 2 KIRIAIDIDGVLADFNSAFIEWFN---EEFGKNPELTPEDITGYW------DWEKWGI-------TEPEFYEKLWRFYEE 65 (191)
T ss_dssp -EEEEEESBTTTB-HHHHHHHHHH---HHTTTS----GGGGTSSS------HHHHHHH-------HSTTHHHHHHHHHTS
T ss_pred CcEEEEECCCCCcccHHHHHHHHH---HHcCCCCCCCHHHhhhhh------HHHHhCC-------CCHHHHHHHHHHHhC
Confidence 45 899999999997654333333 346665 5555544211 0111100 001122222222211
Q ss_pred -HhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCCh-------HhHHHHHHHC-CCCCCCccEEEEcCCccCCCCCHHH
Q 001380 157 -KYAKPNSGIGFPGALELINQCKSKGLKVAVASSADR-------IKVDANLAAA-GLPVSMFDAIVSADAFENLKPAPDI 227 (1089)
Q Consensus 157 -~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~-------~~~~~~l~~~-gl~~~~fd~i~~~~~~~~~KP~~~~ 227 (1089)
.+-. ..+++||+.++|+.|.+.|..+.++|.... +.....+++. +.- .+-+.+++.+ |-
T Consensus 66 ~~~f~--~l~p~~gA~e~l~~L~~~g~~~~~Itar~~~~~~~~~~~k~~Wl~~hf~~i-~~~~~~~~~~-----K~---- 133 (191)
T PF06941_consen 66 PGFFS--NLPPIPGAVEALKKLRDKGHEIVIITARPPEFPDHSAEEKREWLERHFPFI-PYDNLIFTGD-----KT---- 133 (191)
T ss_dssp TTTTT--T--B-TTHHHHHHHHHTSTTEEEEEEE-SSSSGCCCHHHHHHHHHHHHTHH-HHCCEEEESS-----GG----
T ss_pred hhhhc--CCCccHHHHHHHHHHHHcCCcEEEEEecCccccchHHHHHHHHHHHHcCCC-chheEEEecC-----CC----
Confidence 1111 337899999999999999977777776432 2344555554 321 2224455432 11
Q ss_pred HHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccC
Q 001380 228 FLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSV 289 (1089)
Q Consensus 228 ~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el 289 (1089)
.++.+ ++|.|++..+..+...|+..+++....++... .-.-+.+-.|+
T Consensus 134 ------~v~~D----vlIDD~~~n~~~~~~~g~~~iLfd~p~Nr~~~----~~~Rv~~W~ei 181 (191)
T PF06941_consen 134 ------LVGGD----VLIDDRPHNLEQFANAGIPVILFDQPYNRDES----NFPRVNNWEEI 181 (191)
T ss_dssp ------GC--S----EEEESSSHHHSS-SSESSEEEEE--GGGTT------TSEEE-STTSH
T ss_pred ------eEecc----EEecCChHHHHhccCCCceEEEEcCCCCCCCC----CCccCCCHHHH
Confidence 12332 89999999999999999999999876533222 33455677666
No 404
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=97.55 E-value=0.00014 Score=88.91 Aligned_cols=117 Identities=19% Similarity=0.269 Sum_probs=83.6
Q ss_pred CCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCcE
Q 001380 163 SGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSEC 242 (1089)
Q Consensus 163 ~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~ 242 (1089)
...+.|++.+.++.||++|+++.++|+.++...+.+.+++|++ +++.. -+| +--.+..+++.-.-+.+
T Consensus 535 ~D~~R~~a~~aI~~L~~~Gi~~~mLTGDn~~~A~~iA~~lGId-~v~Ae---------llP--edK~~~V~~l~~~g~~V 602 (713)
T COG2217 535 ADELRPDAKEAIAALKALGIKVVMLTGDNRRTAEAIAKELGID-EVRAE---------LLP--EDKAEIVRELQAEGRKV 602 (713)
T ss_pred eCCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcChH-hhecc---------CCc--HHHHHHHHHHHhcCCEE
Confidence 4477999999999999999999999999999999999999996 44221 222 33345556665444789
Q ss_pred EEEcCChhhHHHHHHcCCeEEEEcCCC-CHHHHhhcCCcEEecCcccCCHHHHHh
Q 001380 243 IVIEDALAGVQAAKAAQMRCIAVTTTL-SEERLKEASPSLIRKEIGSVSLNDILT 296 (1089)
Q Consensus 243 v~VGD~~~Di~aA~~aG~~~i~V~~g~-~~~~l~~~~~d~vi~dl~el~i~~ll~ 296 (1089)
.||||+.||--+...|. ++|..|. +.-..+.+..-.+-+|+..+ ...+.
T Consensus 603 amVGDGINDAPALA~Ad---VGiAmG~GtDvA~eaADvvL~~~dL~~v--~~ai~ 652 (713)
T COG2217 603 AMVGDGINDAPALAAAD---VGIAMGSGTDVAIEAADVVLMRDDLSAV--PEAID 652 (713)
T ss_pred EEEeCCchhHHHHhhcC---eeEeecCCcHHHHHhCCEEEecCCHHHH--HHHHH
Confidence 99999999999998887 6666665 33333333333344456555 44443
No 405
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.55 E-value=0.00021 Score=58.89 Aligned_cols=63 Identities=24% Similarity=0.390 Sum_probs=46.5
Q ss_pred EEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHhCCCce
Q 001380 457 VLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRELGVNSW 536 (1089)
Q Consensus 457 ll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~~v~~~ 536 (1089)
|+.||++||++|....+.+.++ ++...++.++.++... ..+.... ...+++..+
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~--~~~~~~~~~~~~~~~~-----~~~~~~~-------------------~~~~~~~~~ 54 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL--ALLNKGVKFEAVDVDE-----DPALEKE-------------------LKRYGVGGV 54 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH--HhhCCCcEEEEEEcCC-----ChHHhhH-------------------HHhCCCccc
Confidence 5789999999999999999998 3444578888886521 1111100 467889999
Q ss_pred eEEEEECCC
Q 001380 537 PTFAVVGPN 545 (1089)
Q Consensus 537 Pt~~lid~~ 545 (1089)
|++++++++
T Consensus 55 P~~~~~~~~ 63 (69)
T cd01659 55 PTLVVFGPG 63 (69)
T ss_pred cEEEEEeCC
Confidence 999999766
No 406
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=97.53 E-value=0.00065 Score=74.65 Aligned_cols=69 Identities=10% Similarity=-0.062 Sum_probs=53.7
Q ss_pred CCCCHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHc---CCeEEEEcCCCCHHHHhhcCCcEEecCcccCCHHHHHhc
Q 001380 221 LKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAA---QMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDILTG 297 (1089)
Q Consensus 221 ~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~a---G~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~i~~ll~~ 297 (1089)
+--|...+.++++.+|+..++++++||+.||+.|-+.+ +-.+|.|..+. ..+.+.+++..++ .+||..
T Consensus 172 g~~Kg~al~~ll~~~~~~~~~v~~~GD~~nD~~mf~~~~~~~g~~vavg~a~-------~~A~~~l~~~~~v--~~~L~~ 242 (266)
T PRK10187 172 GTNKGEAIAAFMQEAPFAGRTPVFVGDDLTDEAGFAVVNRLGGISVKVGTGA-------TQASWRLAGVPDV--WSWLEM 242 (266)
T ss_pred CCCHHHHHHHHHHhcCCCCCeEEEEcCCccHHHHHHHHHhcCCeEEEECCCC-------CcCeEeCCCHHHH--HHHHHH
Confidence 45677889999999999999999999999999998877 33445553321 3578888998887 777776
Q ss_pred c
Q 001380 298 G 298 (1089)
Q Consensus 298 ~ 298 (1089)
+
T Consensus 243 l 243 (266)
T PRK10187 243 I 243 (266)
T ss_pred H
Confidence 6
No 407
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=97.53 E-value=6.7e-05 Score=80.09 Aligned_cols=87 Identities=29% Similarity=0.412 Sum_probs=60.3
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCC---ChHhHHHHHHHCCCCCCCccEEEE-cCCccC----CCCCHHHHHHHHHH-c
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSA---DRIKVDANLAAAGLPVSMFDAIVS-ADAFEN----LKPAPDIFLSASKI-L 235 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~---~~~~~~~~l~~~gl~~~~fd~i~~-~~~~~~----~KP~~~~~~~~l~~-l 235 (1089)
+.+||+.+|+..++++|+.|+++||+ .++.....|.+.|+. . .+.++- .+.... ..-|.+-...+.++ +
T Consensus 115 ~aip~a~~l~~~~~~~G~~V~~iT~R~~~~r~~T~~nL~~~G~~-~-~~~l~lr~~~~~~~~~~~~yK~~~r~~i~~~Gy 192 (229)
T PF03767_consen 115 PAIPGALELYNYARSRGVKVFFITGRPESQREATEKNLKKAGFP-G-WDHLILRPDKDPSKKSAVEYKSERRKEIEKKGY 192 (229)
T ss_dssp EEETTHHHHHHHHHHTTEEEEEEEEEETTCHHHHHHHHHHHTTS-T-BSCGEEEEESSTSS------SHHHHHHHHHTTE
T ss_pred cccHHHHHHHHHHHHCCCeEEEEecCCchhHHHHHHHHHHcCCC-c-cchhccccccccccccccccchHHHHHHHHcCC
Confidence 67999999999999999999999996 456777888999985 3 244332 222111 11244445555555 4
Q ss_pred CCCCCcEEEEcCChhhHHHHHH
Q 001380 236 NVPTSECIVIEDALAGVQAAKA 257 (1089)
Q Consensus 236 gv~p~~~v~VGD~~~Di~aA~~ 257 (1089)
.+ +++|||.++|+.+++.
T Consensus 193 ~I----i~~iGD~~~D~~~~~~ 210 (229)
T PF03767_consen 193 RI----IANIGDQLSDFSGAKT 210 (229)
T ss_dssp EE----EEEEESSGGGCHCTHH
T ss_pred cE----EEEeCCCHHHhhcccc
Confidence 44 8999999999998443
No 408
>PTZ00420 coronin; Provisional
Probab=97.52 E-value=0.048 Score=65.86 Aligned_cols=206 Identities=8% Similarity=0.054 Sum_probs=120.3
Q ss_pred CcceeEEeeC-CCEEEEEECCCCEEEEEECCCCe--EEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEE
Q 001380 658 RPQGLAYNAK-KNLLYVADTENHALREIDFVNDT--VRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAM 734 (1089)
Q Consensus 658 ~P~gla~d~~-g~~lyVaD~~n~~I~~~d~~~g~--v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad 734 (1089)
....++++|. ++ ++++-..++.|+.++..++. +..+...-. . ...+-.....|+|+|.+..++++.
T Consensus 76 ~V~~lafsP~~~~-lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~---~-------L~gH~~~V~sVaf~P~g~~iLaSg 144 (568)
T PTZ00420 76 SILDLQFNPCFSE-ILASGSEDLTIRVWEIPHNDESVKEIKDPQC---I-------LKGHKKKISIIDWNPMNYYIMCSS 144 (568)
T ss_pred CEEEEEEcCCCCC-EEEEEeCCCeEEEEECCCCCccccccccceE---E-------eecCCCcEEEEEECCCCCeEEEEE
Confidence 4578899986 56 66666678899999986432 111100000 0 000112467899999887777777
Q ss_pred CCCcEEEEEECCCCeEEE-EeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeE-EEec
Q 001380 735 AGQHQIWEHSTVDGVTRA-FSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSR-LLAG 812 (1089)
Q Consensus 735 ~~~~~I~~~~~~~g~~~~-~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~-~~~g 812 (1089)
...+.|..||..++.... +.. -.....++++++| .++++.+..+.|+.+++.++... .+.+
T Consensus 145 S~DgtIrIWDl~tg~~~~~i~~----------------~~~V~SlswspdG-~lLat~s~D~~IrIwD~Rsg~~i~tl~g 207 (568)
T PTZ00420 145 GFDSFVNIWDIENEKRAFQINM----------------PKKLSSLKWNIKG-NLLSGTCVGKHMHIIDPRKQEIASSFHI 207 (568)
T ss_pred eCCCeEEEEECCCCcEEEEEec----------------CCcEEEEEECCCC-CEEEEEecCCEEEEEECCCCcEEEEEec
Confidence 778899999988775432 211 0135689999998 56676667789999999876543 2222
Q ss_pred CCCCCCCCccccCCCCCccccccccCceEEEEccCCcEEEEeCCC----CEEEEEeCCC--CeEEEEeccCCCCCCCCcc
Q 001380 813 GDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYN----HKIKKLDPAS--NRVSTLAGIGKAGFKDGAA 886 (1089)
Q Consensus 813 ~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~lyVaD~~n----~~I~~~d~~~--~~v~t~~g~g~~g~~~g~~ 886 (1089)
. .+.... +...+ ..+.+++..+++-..+ +.|+.+|..+ ..+.++....
T Consensus 208 H-------------~g~~~s--~~v~~--~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~--------- 261 (568)
T PTZ00420 208 H-------------DGGKNT--KNIWI--DGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDN--------- 261 (568)
T ss_pred c-------------cCCcee--EEEEe--eeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecC---------
Confidence 1 111000 00001 1223566555543222 4688888763 2333332111
Q ss_pred cccccCCCceE--EEcc-CCcEEEEECCCCEEEEEeCCCC
Q 001380 887 LAAQLSEPAGI--IEAQ-NGNLFIADTNNNIIRYLDLNKE 923 (1089)
Q Consensus 887 ~~~~l~~P~gi--~vd~-~G~lyVad~~n~~I~~~~~~~~ 923 (1089)
.+..+ ..|+ +|.+|++..+++.|+.+++..+
T Consensus 262 ------~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 262 ------ASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred ------CccceEEeeeCCCCCEEEEEECCCeEEEEEccCC
Confidence 11221 2343 5789999999999999999765
No 409
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=97.51 E-value=0.1 Score=57.04 Aligned_cols=204 Identities=13% Similarity=0.087 Sum_probs=130.8
Q ss_pred CceEEEeecCCeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEE
Q 001380 603 PGKLAIDILNNRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHAL 681 (1089)
Q Consensus 603 P~~vavd~~~g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I 681 (1089)
-..++++| +.+|.++..+..+=+.++.. |.....+.+. -.+...+.++.+|.+|--.| -.+.|
T Consensus 67 vFavsl~P-~~~l~aTGGgDD~AflW~~~~ge~~~eltgH--------------KDSVt~~~FshdgtlLATGd-msG~v 130 (399)
T KOG0296|consen 67 VFAVSLHP-NNNLVATGGGDDLAFLWDISTGEFAGELTGH--------------KDSVTCCSFSHDGTLLATGD-MSGKV 130 (399)
T ss_pred eEEEEeCC-CCceEEecCCCceEEEEEccCCcceeEecCC--------------CCceEEEEEccCceEEEecC-CCccE
Confidence 44678888 88899999888888888765 6666555443 12557788888887333333 36778
Q ss_pred EEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCC-CeEEEEeCCCccc
Q 001380 682 REIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVD-GVTRAFSGDGYER 760 (1089)
Q Consensus 682 ~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~-g~~~~~~g~g~~~ 760 (1089)
+++..++|......- + ....-.=|.++|.+ .++.+....+.+|.|.... +.+..+.|.+..
T Consensus 131 ~v~~~stg~~~~~~~-~---------------e~~dieWl~WHp~a-~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~- 192 (399)
T KOG0296|consen 131 LVFKVSTGGEQWKLD-Q---------------EVEDIEWLKWHPRA-HILLAGSTDGSVWMWQIPSQALCKVMSGHNSP- 192 (399)
T ss_pred EEEEcccCceEEEee-c---------------ccCceEEEEecccc-cEEEeecCCCcEEEEECCCcceeeEecCCCCC-
Confidence 888877766555431 0 01122336789977 8888888899999999877 788888875421
Q ss_pred cCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCce
Q 001380 761 NLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPL 840 (1089)
Q Consensus 761 ~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~ 840 (1089)
.+.=.+.|+|++++.... +++|+.+++.++......++.. .++. +........-.
T Consensus 193 --------------ct~G~f~pdGKr~~tgy~-dgti~~Wn~ktg~p~~~~~~~e----~~~~------~~~~~~~~~~~ 247 (399)
T KOG0296|consen 193 --------------CTCGEFIPDGKRILTGYD-DGTIIVWNPKTGQPLHKITQAE----GLEL------PCISLNLAGST 247 (399)
T ss_pred --------------cccccccCCCceEEEEec-CceEEEEecCCCceeEEecccc----cCcC------Cccccccccce
Confidence 111235678877776654 7999999999887654444221 0000 01111122223
Q ss_pred EEEEccCCcEEEEeCCCCEEEEEeC
Q 001380 841 GVYCAKNGQIYVADSYNHKIKKLDP 865 (1089)
Q Consensus 841 gva~~~~G~lyVaD~~n~~I~~~d~ 865 (1089)
-++-..+|..|+.....+++...+.
T Consensus 248 ~~~g~~e~~~~~~~~~sgKVv~~~n 272 (399)
T KOG0296|consen 248 LTKGNSEGVACGVNNGSGKVVNCNN 272 (399)
T ss_pred eEeccCCccEEEEccccceEEEecC
Confidence 3445567888888888888877653
No 410
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.014 Score=58.77 Aligned_cols=203 Identities=14% Similarity=0.117 Sum_probs=116.1
Q ss_pred CcceeEEeeCCCEEEEEEC--CCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEEC
Q 001380 658 RPQGLAYNAKKNLLYVADT--ENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMA 735 (1089)
Q Consensus 658 ~P~gla~d~~g~~lyVaD~--~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~ 735 (1089)
.-||+.++ +| .+|.+-. ++.+|++.|+++|++..-....... ..--|++. .|+.+|.-.+
T Consensus 47 fTQGL~~~-~g-~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~--------------~FgEGit~--~gd~~y~LTw 108 (262)
T COG3823 47 FTQGLEYL-DG-HILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDT--------------VFGEGITK--LGDYFYQLTW 108 (262)
T ss_pred hhcceeee-CC-EEEEeccccccceeEEEeccCceEEEEeecCCcc--------------ccccceee--ccceEEEEEe
Confidence 34899887 34 5777644 5779999999987765432111000 01123333 3578888888
Q ss_pred CCcEEEEEECCCCeE-EEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCC----CeEEE
Q 001380 736 GQHQIWEHSTVDGVT-RAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTG----GSRLL 810 (1089)
Q Consensus 736 ~~~~I~~~~~~~g~~-~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~----~~~~~ 810 (1089)
..+.-++||..+-++ -.+.=.| +-.||+-| +++|+.+| ++..++.-+|++= .+.+-
T Consensus 109 ~egvaf~~d~~t~~~lg~~~y~G----------------eGWgLt~d--~~~Limsd-GsatL~frdP~tfa~~~~v~VT 169 (262)
T COG3823 109 KEGVAFKYDADTLEELGRFSYEG----------------EGWGLTSD--DKNLIMSD-GSATLQFRDPKTFAELDTVQVT 169 (262)
T ss_pred ccceeEEEChHHhhhhcccccCC----------------cceeeecC--CcceEeeC-CceEEEecCHHHhhhcceEEEE
Confidence 777777888654321 1221111 22466554 44777776 5678887777641 11111
Q ss_pred ecCCCCCCCCccccCCCCCccccccccCceEEEEccCCcEEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccc
Q 001380 811 AGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQ 890 (1089)
Q Consensus 811 ~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~ 890 (1089)
..|.|. .+|+ -+-+ -+|.+|-.-++..+|.+++|++|+|..+.....--..-+ .....
T Consensus 170 ~~g~pv-----------------~~LN---ELE~-VdG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~-~~~~~ 227 (262)
T COG3823 170 DDGVPV-----------------SKLN---ELEW-VDGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELN-LDKSN 227 (262)
T ss_pred ECCeec-----------------cccc---ceee-eccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcC-ccccc
Confidence 111110 0111 1222 278999988999999999999999988764311100000 11124
Q ss_pred cCCCceEEEccCC-cEEEEECCCCEEEEEe
Q 001380 891 LSEPAGIIEAQNG-NLFIADTNNNIIRYLD 919 (1089)
Q Consensus 891 l~~P~gi~vd~~G-~lyVad~~n~~I~~~~ 919 (1089)
.+-++|||.++++ ++|++.-.=-.+..+.
T Consensus 228 ~nvlNGIA~~~~~~r~~iTGK~wp~lfEVk 257 (262)
T COG3823 228 DNVLNGIAHDPQQDRFLITGKLWPLLFEVK 257 (262)
T ss_pred cccccceeecCcCCeEEEecCcCceeEEEE
Confidence 6789999999866 7999865434444333
No 411
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=97.47 E-value=0.002 Score=70.67 Aligned_cols=74 Identities=14% Similarity=0.130 Sum_probs=53.7
Q ss_pred cCCCCCHHHHHHHHHHcCCC--CCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCH---HHHhhc--CCcEEecCcccCCH
Q 001380 219 ENLKPAPDIFLSASKILNVP--TSECIVIEDALAGVQAAKAAQMRCIAVTTTLSE---ERLKEA--SPSLIRKEIGSVSL 291 (1089)
Q Consensus 219 ~~~KP~~~~~~~~l~~lgv~--p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~---~~l~~~--~~d~vi~dl~el~i 291 (1089)
..+-.|...++.+++++|++ .+++++|||+.||+.|.+.+|. .|..+... +++++. .+++|..+-.+-.+
T Consensus 172 ~~~~~Kg~ai~~l~~~~~i~~~~~~~~a~GD~~ND~~Ml~~ag~---~vam~Na~~~~~~lk~~~~a~~~vt~~~~~dGv 248 (256)
T TIGR01486 172 GAGSDKGKAANALKQFYNQPGGAIKVVGLGDSPNDLPLLEVVDL---AVVVPGPNGPNVSLKPGDPGSFLLTPAPGPEGW 248 (256)
T ss_pred cCCCCHHHHHHHHHHHHhhcCCCceEEEEcCCHhhHHHHHHCCE---EEEeCCCCCCccccCccCCCcEEEcCCCCcHHH
Confidence 34667788899999999999 9999999999999999999994 34333322 456554 23477776655544
Q ss_pred HHHH
Q 001380 292 NDIL 295 (1089)
Q Consensus 292 ~~ll 295 (1089)
...|
T Consensus 249 a~~l 252 (256)
T TIGR01486 249 REAL 252 (256)
T ss_pred HHHH
Confidence 4444
No 412
>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=97.44 E-value=0.011 Score=76.63 Aligned_cols=201 Identities=17% Similarity=0.244 Sum_probs=148.9
Q ss_pred CcceeEEeeCCCEEEEEECCCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCC
Q 001380 658 RPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQ 737 (1089)
Q Consensus 658 ~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~ 737 (1089)
....+.++..++.+|++|.....|......+.....+-+.| +..|.++++|--++.+|++|.+.
T Consensus 438 ~~~~~d~d~~~~~i~~~d~~~~~i~~~~~~~~~~~~~~~~g----------------~~~~~~lavD~~~~~~y~tDe~~ 501 (877)
T KOG1215|consen 438 NAVALDFDVLNNRIYWADLSDEKICRASQDGSSECELCGDG----------------LCIPEGLAVDWIGDNIYWTDEGN 501 (877)
T ss_pred cceEEEEEecCCEEEEEeccCCeEeeeccCCCccceEeccC----------------ccccCcEEEEeccCCceecccCC
Confidence 55667777777789999999999988887766655544444 34788999999999999999999
Q ss_pred cEEEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCC-CeEEEEEcCCCCeEEEecCCCC
Q 001380 738 HQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSES-SSIRALNLKTGGSRLLAGGDPI 816 (1089)
Q Consensus 738 ~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~-~~I~~~~~~~~~~~~~~g~~~~ 816 (1089)
..+...+..+.....+.. ..+..|..++++|..+.+|++|.+. .+|.+-.+++.....+...
T Consensus 502 ~~i~v~~~~g~~~~vl~~--------------~~l~~~r~~~v~p~~g~~~wtd~~~~~~i~ra~~dg~~~~~l~~~--- 564 (877)
T KOG1215|consen 502 CLIEVADLDGSSRKVLVS--------------KDLDLPRSIAVDPEKGLMFWTDWGQPPRIERASLDGSERAVLVTN--- 564 (877)
T ss_pred ceeEEEEccCCceeEEEe--------------cCCCCccceeeccccCeeEEecCCCCchhhhhcCCCCCceEEEeC---
Confidence 999888866555333432 2235799999999888999999883 4576766665444444321
Q ss_pred CCCCccccCCCCCccccccccCceEEEEcc-CCcEEEEeCCCC-EEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCC
Q 001380 817 FPDNLFKFGDRDGMGSEVLLQHPLGVYCAK-NGQIYVADSYNH-KIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEP 894 (1089)
Q Consensus 817 ~~~~l~~~g~~dg~~~~~~l~~P~gva~~~-~G~lyVaD~~n~-~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P 894 (1089)
.+..|.|+++|. +..+|++|...+ .|.+++-+++... +.. ...+.+|
T Consensus 565 ------------------~~~~p~glt~d~~~~~~yw~d~~~~~~i~~~~~~g~~r~-~~~------------~~~~~~p 613 (877)
T KOG1215|consen 565 ------------------GILWPNGLTIDYETDRLYWADAKLDYTIESANMDGQNRR-VVD------------SEDLPHP 613 (877)
T ss_pred ------------------CccCCCcceEEeecceeEEEcccCCcceeeeecCCCceE-Eec------------cccCCCc
Confidence 156899999985 568999999888 7888887665554 211 1257889
Q ss_pred ceEEEccCCcEEEEECCCCEEEEEeCCCC
Q 001380 895 AGIIEAQNGNLFIADTNNNIIRYLDLNKE 923 (1089)
Q Consensus 895 ~gi~vd~~G~lyVad~~n~~I~~~~~~~~ 923 (1089)
.++++-. +.+|..|..++.+.+......
T Consensus 614 ~~~~~~~-~~iyw~d~~~~~~~~~~~~~~ 641 (877)
T KOG1215|consen 614 FGLSVFE-DYIYWTDWSNRAISRAEKHKG 641 (877)
T ss_pred eEEEEec-ceeEEeeccccceEeeecccC
Confidence 9999974 579999999987777766555
No 413
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.40 E-value=0.11 Score=60.58 Aligned_cols=237 Identities=17% Similarity=0.210 Sum_probs=128.7
Q ss_pred EEEeecCCeEEEEeCCCCEEEEEeC-CCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEEEE
Q 001380 606 LAIDILNNRLFISDSNHNRIVVTDL-DGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREI 684 (1089)
Q Consensus 606 vavd~~~g~L~vsd~~~~~I~~~~~-~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~~ 684 (1089)
.+++ ++++|+.+. .+.|+.+|. +|+.+......+. + -.+++++ ++.+||.+ .++.|+.+
T Consensus 61 p~v~--~~~v~v~~~-~g~v~a~d~~tG~~~W~~~~~~~------------~--~~~p~v~--~~~v~v~~-~~g~l~al 120 (377)
T TIGR03300 61 PAVA--GGKVYAADA-DGTVVALDAETGKRLWRVDLDER------------L--SGGVGAD--GGLVFVGT-EKGEVIAL 120 (377)
T ss_pred eEEE--CCEEEEECC-CCeEEEEEccCCcEeeeecCCCC------------c--ccceEEc--CCEEEEEc-CCCEEEEE
Confidence 3454 788998886 478999995 6988876544311 0 1234453 55588876 46789999
Q ss_pred ECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCccccCCC
Q 001380 685 DFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNG 764 (1089)
Q Consensus 685 d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~~~~g 764 (1089)
|.++|.+.--...+. .....| ++. ++.+|+.. ..+.|+.+|..+|.+..-.......
T Consensus 121 d~~tG~~~W~~~~~~-------------~~~~~p---~v~--~~~v~v~~-~~g~l~a~d~~tG~~~W~~~~~~~~---- 177 (377)
T TIGR03300 121 DAEDGKELWRAKLSS-------------EVLSPP---LVA--NGLVVVRT-NDGRLTALDAATGERLWTYSRVTPA---- 177 (377)
T ss_pred ECCCCcEeeeeccCc-------------eeecCC---EEE--CCEEEEEC-CCCeEEEEEcCCCceeeEEccCCCc----
Confidence 998777654332211 011223 222 35777754 4678999999888764332111000
Q ss_pred CCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEec-CCCCCCCCccccCCCCCccccccccCceEEE
Q 001380 765 SSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAG-GDPIFPDNLFKFGDRDGMGSEVLLQHPLGVY 843 (1089)
Q Consensus 765 ~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g-~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva 843 (1089)
..+......++. ++ .+|+.. .++.+..+++.+|....-.. ..+ .|..+..........| .
T Consensus 178 -----~~~~~~~sp~~~-~~-~v~~~~-~~g~v~ald~~tG~~~W~~~~~~~--------~g~~~~~~~~~~~~~p---~ 238 (377)
T TIGR03300 178 -----LTLRGSASPVIA-DG-GVLVGF-AGGKLVALDLQTGQPLWEQRVALP--------KGRTELERLVDVDGDP---V 238 (377)
T ss_pred -----eeecCCCCCEEE-CC-EEEEEC-CCCEEEEEEccCCCEeeeeccccC--------CCCCchhhhhccCCcc---E
Confidence 000000111222 23 676654 45788999987765432110 000 0000000000001112 1
Q ss_pred EccCCcEEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEEEEeCCCC
Q 001380 844 CAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLDLNKE 923 (1089)
Q Consensus 844 ~~~~G~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~~~~~~ 923 (1089)
+ .++.+|+++. ++.++.+|+++|.+.--.. .......+++ +++||+.+ .++.|..++..++
T Consensus 239 ~-~~~~vy~~~~-~g~l~a~d~~tG~~~W~~~---------------~~~~~~p~~~-~~~vyv~~-~~G~l~~~d~~tG 299 (377)
T TIGR03300 239 V-DGGQVYAVSY-QGRVAALDLRSGRVLWKRD---------------ASSYQGPAVD-DNRLYVTD-ADGVVVALDRRSG 299 (377)
T ss_pred E-ECCEEEEEEc-CCEEEEEECCCCcEEEeec---------------cCCccCceEe-CCEEEEEC-CCCeEEEEECCCC
Confidence 2 2678999875 5789999998775432211 1123344554 57899886 5689999999765
No 414
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.40 E-value=0.023 Score=62.11 Aligned_cols=210 Identities=17% Similarity=0.126 Sum_probs=123.1
Q ss_pred EEEeecCCeEEEEe----CCCCEEEEEeCCCCEE--EEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCC
Q 001380 606 LAIDILNNRLFISD----SNHNRIVVTDLDGNFI--VQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENH 679 (1089)
Q Consensus 606 vavd~~~g~L~vsd----~~~~~I~~~~~~g~~~--~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~ 679 (1089)
-++++++..||.+. ++.+.|-++|....+. ..+...| ..|+.|.+.++|..|.||+.+-+
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~G--------------IGPHel~l~pDG~tLvVANGGI~ 121 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHG--------------IGPHELLLMPDGETLVVANGGIE 121 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCC--------------cChhhEEEcCCCCEEEEEcCCCc
Confidence 36777677788884 4568899999984433 2444332 26999999999988999976421
Q ss_pred EE-----EEEECCC--CeEEEE-ecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcE-------EEEEE
Q 001380 680 AL-----REIDFVN--DTVRTL-AGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQ-------IWEHS 744 (1089)
Q Consensus 680 ~I-----~~~d~~~--g~v~~~-ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~-------I~~~~ 744 (1089)
.= .++|+++ -.+..+ ..+|.--.. -.....-...|-..|+++.+| .+++++...+. |..+.
T Consensus 122 Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q---~~Lp~~~~~lSiRHLa~~~~G-~V~~a~Q~qg~~~~~~PLva~~~ 197 (305)
T PF07433_consen 122 THPDSGRAKLNLDTMQPSLVYLDARSGALLEQ---VELPPDLHQLSIRHLAVDGDG-TVAFAMQYQGDPGDAPPLVALHR 197 (305)
T ss_pred cCcccCceecChhhcCCceEEEecCCCceeee---eecCccccccceeeEEecCCC-cEEEEEecCCCCCccCCeEEEEc
Confidence 11 1333332 122222 222211000 000011233578999999987 88888755432 22221
Q ss_pred CCCCeEEEEeCCCccccCCCCCCCCcccc-CCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccc
Q 001380 745 TVDGVTRAFSGDGYERNLNGSSSLNTSFA-QPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFK 823 (1089)
Q Consensus 745 ~~~g~~~~~~g~g~~~~~~g~~~~~~~~~-~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~ 823 (1089)
. ++..+.+... ......|. .--.||++.+|+.+.++....+++..++..++......
T Consensus 198 ~-g~~~~~~~~p---------~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~------------ 255 (305)
T PF07433_consen 198 R-GGALRLLPAP---------EEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSV------------ 255 (305)
T ss_pred C-CCcceeccCC---------hHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecc------------
Confidence 1 1112222111 00011222 24579999999888899999999999988876654221
Q ss_pred cCCCCCccccccccCceEEEEccCCcEEEEeCCCCEEEEEeCCCC
Q 001380 824 FGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPASN 868 (1089)
Q Consensus 824 ~g~~dg~~~~~~l~~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~ 868 (1089)
.+.-.-||+...+| |+..++.+++..++..+.
T Consensus 256 -----------~l~D~cGva~~~~~--f~~ssG~G~~~~~~~~~~ 287 (305)
T PF07433_consen 256 -----------PLPDACGVAPTDDG--FLVSSGQGQLIRLSPDGP 287 (305)
T ss_pred -----------ccCceeeeeecCCc--eEEeCCCccEEEccCccc
Confidence 13445678887777 777778888888876543
No 415
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=97.39 E-value=0.0091 Score=67.37 Aligned_cols=225 Identities=13% Similarity=0.139 Sum_probs=142.2
Q ss_pred CCCCCceEEEeecCCeEEEEeCCCCEEEEEeCCCCEEE--EEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEEC
Q 001380 599 PLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIV--QIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADT 676 (1089)
Q Consensus 599 ~l~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~g~~~~--~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~ 676 (1089)
+-+--..+++|+ .|--|++.+-...|..||..|--.. .+. ...+..-+.-..+.+++.|+.|.|+-
T Consensus 166 gtk~Vsal~~Dp-~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr----------~l~P~E~h~i~sl~ys~Tg~~iLvvs- 233 (641)
T KOG0772|consen 166 GTKIVSALAVDP-SGARFVSGSLDYTVKFWDFQGMDASMRSFR----------QLQPCETHQINSLQYSVTGDQILVVS- 233 (641)
T ss_pred CceEEEEeeecC-CCceeeeccccceEEEEecccccccchhhh----------ccCcccccccceeeecCCCCeEEEEe-
Confidence 334556788998 6667788888889999998875332 111 11122334557888888998666554
Q ss_pred CCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCC--eEEEEe
Q 001380 677 ENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDG--VTRAFS 754 (1089)
Q Consensus 677 ~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g--~~~~~~ 754 (1089)
++...+.+|-++-.+..+.. |.+ +--...-+..++..-+..+|+|.....|++....+.++.|+...- ...+|-
T Consensus 234 g~aqakl~DRdG~~~~e~~K-GDQ---YI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik 309 (641)
T KOG0772|consen 234 GSAQAKLLDRDGFEIVEFSK-GDQ---YIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIK 309 (641)
T ss_pred cCcceeEEccCCceeeeeec-cch---hhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEe
Confidence 56778889987766655542 221 110111122334456678899999999999888777777765543 334443
Q ss_pred CCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccc
Q 001380 755 GDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEV 834 (1089)
Q Consensus 755 g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~ 834 (1089)
..+.. ..-..|.-.++++|| .++.+-...++|+.++..+-.+... ....-.+.+|
T Consensus 310 ~k~~~----------g~Rv~~tsC~~nrdg-~~iAagc~DGSIQ~W~~~~~~v~p~---------~~vk~AH~~g----- 364 (641)
T KOG0772|consen 310 TKPAG----------GKRVPVTSCAWNRDG-KLIAAGCLDGSIQIWDKGSRTVRPV---------MKVKDAHLPG----- 364 (641)
T ss_pred eccCC----------CcccCceeeecCCCc-chhhhcccCCceeeeecCCcccccc---------eEeeeccCCC-----
Confidence 22110 112246678999999 6688888899999998643222211 1111111221
Q ss_pred cccCceEEEEccCCcEEEEeCCCCEEEEEeCC
Q 001380 835 LLQHPLGVYCAKNGQIYVADSYNHKIKKLDPA 866 (1089)
Q Consensus 835 ~l~~P~gva~~~~G~lyVaD~~n~~I~~~d~~ 866 (1089)
+.-..|+++.+|+++.+....+.+++.|..
T Consensus 365 --~~Itsi~FS~dg~~LlSRg~D~tLKvWDLr 394 (641)
T KOG0772|consen 365 --QDITSISFSYDGNYLLSRGFDDTLKVWDLR 394 (641)
T ss_pred --CceeEEEeccccchhhhccCCCceeeeecc
Confidence 245789999999999999999999998864
No 416
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=97.39 E-value=0.025 Score=61.70 Aligned_cols=255 Identities=14% Similarity=0.188 Sum_probs=156.5
Q ss_pred eEEEeecCCeEEEEeCCCCEEEEEeCCCCEEE-EEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEEE
Q 001380 605 KLAIDILNNRLFISDSNHNRIVVTDLDGNFIV-QIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALRE 683 (1089)
Q Consensus 605 ~vavd~~~g~L~vsd~~~~~I~~~~~~g~~~~-~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~ 683 (1089)
.+.++| +|...++.+|...+..+|.+.+.-. +..+. -+....|+++|||. ...+..-++.|+.
T Consensus 120 ~~~fsp-~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH--------------~~WVlcvawsPDgk-~iASG~~dg~I~l 183 (480)
T KOG0271|consen 120 SVQFSP-TGSRLVTGSGDTTVRLWDLDTETPLFTCKGH--------------KNWVLCVAWSPDGK-KIASGSKDGSIRL 183 (480)
T ss_pred EEEecC-CCceEEecCCCceEEeeccCCCCcceeecCC--------------ccEEEEEEECCCcc-hhhccccCCeEEE
Confidence 466787 8888999999999999999876543 33222 35789999999999 6667777999999
Q ss_pred EECCCCeE--EEEecCCCCCCCCCCCCcccccccCCceeEEEecCC----CEEEEEECCCcEEEEEECCCCeEEEE-eCC
Q 001380 684 IDFVNDTV--RTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPIN----EKVYIAMAGQHQIWEHSTVDGVTRAF-SGD 756 (1089)
Q Consensus 684 ~d~~~g~v--~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g----~~lyvad~~~~~I~~~~~~~g~~~~~-~g~ 756 (1089)
+|+.+|.. +.+.|.- ..-.+++|.|-. .+.+.+....+.|+.||...+++... .|.
T Consensus 184 wdpktg~~~g~~l~gH~-----------------K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgH 246 (480)
T KOG0271|consen 184 WDPKTGQQIGRALRGHK-----------------KWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGH 246 (480)
T ss_pred ecCCCCCcccccccCcc-----------------cceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccC
Confidence 99876542 3333322 144566665421 25666667788899999887765543 332
Q ss_pred CccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCe-EEEecCC-----------CCCCCCcccc
Q 001380 757 GYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGS-RLLAGGD-----------PIFPDNLFKF 824 (1089)
Q Consensus 757 g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~-~~~~g~~-----------~~~~~~l~~~ 824 (1089)
. +.-..|.+..+| .|| +.+...+|++++...|.. +.+-|.. .....+-|..
T Consensus 247 T---------------~~VTCvrwGG~g-liy-SgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~ 309 (480)
T KOG0271|consen 247 T---------------ASVTCVRWGGEG-LIY-SGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDH 309 (480)
T ss_pred c---------------cceEEEEEcCCc-eEE-ecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhcccccc
Confidence 1 123466676665 555 455667888887665421 1222210 0000000100
Q ss_pred --------------------------------CCCCCccc---cccc-----------cCceEEEEccCCcEEEEeCCCC
Q 001380 825 --------------------------------GDRDGMGS---EVLL-----------QHPLGVYCAKNGQIYVADSYNH 858 (1089)
Q Consensus 825 --------------------------------g~~dg~~~---~~~l-----------~~P~gva~~~~G~lyVaD~~n~ 858 (1089)
|..|..-. .... +--..|.++|||+...+-+...
T Consensus 310 t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDk 389 (480)
T KOG0271|consen 310 TGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDK 389 (480)
T ss_pred ccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeeccc
Confidence 00010000 0000 1124577888887777777777
Q ss_pred EEEEEeCCC-CeEEEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEEEEeCCCC
Q 001380 859 KIKKLDPAS-NRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLDLNKE 923 (1089)
Q Consensus 859 ~I~~~d~~~-~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~~~~~~ 923 (1089)
.|+-.|-.+ +++.++-| ....-.-++...|.+|+|+.+...+|.+++..++
T Consensus 390 SVkLW~g~tGk~lasfRG--------------Hv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tk 441 (480)
T KOG0271|consen 390 SVKLWDGRTGKFLASFRG--------------HVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTK 441 (480)
T ss_pred ceeeeeCCCcchhhhhhh--------------ccceeEEEEeccCccEEEEcCCCceEEEEEeeee
Confidence 777777543 34455543 2344566777778899999999999999998776
No 417
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=97.39 E-value=0.14 Score=56.05 Aligned_cols=262 Identities=11% Similarity=0.115 Sum_probs=150.5
Q ss_pred ceEEEeecCCeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEE
Q 001380 604 GKLAIDILNNRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALR 682 (1089)
Q Consensus 604 ~~vavd~~~g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~ 682 (1089)
..+.++. +|.|..+---.+.|.++..+ |.....+... -..-.-+..+|.+. ++.|....+.|+
T Consensus 110 t~~~Fsh-dgtlLATGdmsG~v~v~~~stg~~~~~~~~e--------------~~dieWl~WHp~a~-illAG~~DGsvW 173 (399)
T KOG0296|consen 110 TCCSFSH-DGTLLATGDMSGKVLVFKVSTGGEQWKLDQE--------------VEDIEWLKWHPRAH-ILLAGSTDGSVW 173 (399)
T ss_pred EEEEEcc-CceEEEecCCCccEEEEEcccCceEEEeecc--------------cCceEEEEeccccc-EEEeecCCCcEE
Confidence 3456665 66666666567888888776 4444454322 11335667788777 788888889999
Q ss_pred EEECCC-CeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCcccc
Q 001380 683 EIDFVN-DTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERN 761 (1089)
Q Consensus 683 ~~d~~~-g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~~ 761 (1089)
.+...+ +..+.+.|.+..... =.|.|+|+++..... ++.|++||+.++....-.+.. +.
T Consensus 174 mw~ip~~~~~kv~~Gh~~~ct~-----------------G~f~pdGKr~~tgy~-dgti~~Wn~ktg~p~~~~~~~-e~- 233 (399)
T KOG0296|consen 174 MWQIPSQALCKVMSGHNSPCTC-----------------GEFIPDGKRILTGYD-DGTIIVWNPKTGQPLHKITQA-EG- 233 (399)
T ss_pred EEECCCcceeeEecCCCCCccc-----------------ccccCCCceEEEEec-CceEEEEecCCCceeEEeccc-cc-
Confidence 998877 777778775532211 125677766665544 789999999988544332211 00
Q ss_pred CCCCCCCCccccCCceEEEc--CCCCEEEEEeCCCCeEEEEEcCCCCeEEEecC---------CCC-CCCCccccCCCCC
Q 001380 762 LNGSSSLNTSFAQPSGISLS--PDFMEIYVADSESSSIRALNLKTGGSRLLAGG---------DPI-FPDNLFKFGDRDG 829 (1089)
Q Consensus 762 ~~g~~~~~~~~~~P~glav~--~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~---------~~~-~~~~l~~~g~~dg 829 (1089)
-..+.-.+..-..+.++ .++ ..+++...+++|....-.+ .....+.. .+. .-..|++.|..||
T Consensus 234 ---~~~~~~~~~~~~~~~~~g~~e~-~~~~~~~~sgKVv~~~n~~-~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG 308 (399)
T KOG0296|consen 234 ---LELPCISLNLAGSTLTKGNSEG-VACGVNNGSGKVVNCNNGT-VPELKPSQEELDESVESIPSSSKLPLAACGSVDG 308 (399)
T ss_pred ---CcCCccccccccceeEeccCCc-cEEEEccccceEEEecCCC-Cccccccchhhhhhhhhcccccccchhhcccccc
Confidence 00000111111122222 233 5666665556554443211 11111110 000 1124677888887
Q ss_pred ccc---------cccccCceEE---EEccCCcEEEEeCCCCEEEEEeCCCCeEEE-EeccCCCCCCCCcccccccCCCce
Q 001380 830 MGS---------EVLLQHPLGV---YCAKNGQIYVADSYNHKIKKLDPASNRVST-LAGIGKAGFKDGAALAAQLSEPAG 896 (1089)
Q Consensus 830 ~~~---------~~~l~~P~gv---a~~~~G~lyVaD~~n~~I~~~d~~~~~v~t-~~g~g~~g~~~g~~~~~~l~~P~g 896 (1089)
... ...+.|+.+| .+.++ ....+-..|++|+.+|..+|++.. +.| ....-..
T Consensus 309 ~i~iyD~a~~~~R~~c~he~~V~~l~w~~t-~~l~t~c~~g~v~~wDaRtG~l~~~y~G--------------H~~~Il~ 373 (399)
T KOG0296|consen 309 TIAIYDLAASTLRHICEHEDGVTKLKWLNT-DYLLTACANGKVRQWDARTGQLKFTYTG--------------HQMGILD 373 (399)
T ss_pred eEEEEecccchhheeccCCCceEEEEEcCc-chheeeccCceEEeeeccccceEEEEec--------------CchheeE
Confidence 522 2334566665 34442 333445678999999998777644 443 2334667
Q ss_pred EEEccCCcEEEEECCCCEEEEEeCC
Q 001380 897 IIEAQNGNLFIADTNNNIIRYLDLN 921 (1089)
Q Consensus 897 i~vd~~G~lyVad~~n~~I~~~~~~ 921 (1089)
+++.+++++.|+-+..|..++|...
T Consensus 374 f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 374 FALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEEcCCCcEEEEecCCCeEEEEecC
Confidence 8888999999998888888888653
No 418
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.39 E-value=0.1 Score=61.08 Aligned_cols=241 Identities=15% Similarity=0.185 Sum_probs=129.6
Q ss_pred CCeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEEEEECCCCe
Q 001380 612 NNRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNDT 690 (1089)
Q Consensus 612 ~g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~ 690 (1089)
++++|+.+. ++.++.+|.+ |+.+......+..++.... ....+ -.+++++ ++.+|+.+ .++.|+.+|.++|+
T Consensus 69 ~~~vy~~~~-~g~l~ald~~tG~~~W~~~~~~~~~~~~~~-~~~~~--~~~~~v~--~~~v~v~~-~~g~l~ald~~tG~ 141 (394)
T PRK11138 69 YNKVYAADR-AGLVKALDADTGKEIWSVDLSEKDGWFSKN-KSALL--SGGVTVA--GGKVYIGS-EKGQVYALNAEDGE 141 (394)
T ss_pred CCEEEEECC-CCeEEEEECCCCcEeeEEcCCCcccccccc-ccccc--ccccEEE--CCEEEEEc-CCCEEEEEECCCCC
Confidence 789999876 4689999974 9888765443211110000 00000 1235554 45589886 46689999988776
Q ss_pred EEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCccccCCCCCCCCc
Q 001380 691 VRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNT 770 (1089)
Q Consensus 691 v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~ 770 (1089)
+.--...+. ...++| ++. ++.+|+.. +++.|+.+|..+|++..-......... ..
T Consensus 142 ~~W~~~~~~-------------~~~ssP---~v~--~~~v~v~~-~~g~l~ald~~tG~~~W~~~~~~~~~~------~~ 196 (394)
T PRK11138 142 VAWQTKVAG-------------EALSRP---VVS--DGLVLVHT-SNGMLQALNESDGAVKWTVNLDVPSLT------LR 196 (394)
T ss_pred CcccccCCC-------------ceecCC---EEE--CCEEEEEC-CCCEEEEEEccCCCEeeeecCCCCccc------cc
Confidence 543332111 012233 222 35788754 567899999998876543321100000 00
Q ss_pred cccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCcccccc----ccCceEEEEcc
Q 001380 771 SFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVL----LQHPLGVYCAK 846 (1089)
Q Consensus 771 ~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~----l~~P~gva~~~ 846 (1089)
....| ++. ++ .+|+.. .++.+..++..+|....-. ..+...+.....+ ...|. + .
T Consensus 197 ~~~sP---~v~-~~-~v~~~~-~~g~v~a~d~~~G~~~W~~-----------~~~~~~~~~~~~~~~~~~~sP~---v-~ 255 (394)
T PRK11138 197 GESAP---ATA-FG-GAIVGG-DNGRVSAVLMEQGQLIWQQ-----------RISQPTGATEIDRLVDVDTTPV---V-V 255 (394)
T ss_pred CCCCC---EEE-CC-EEEEEc-CCCEEEEEEccCChhhhee-----------ccccCCCccchhcccccCCCcE---E-E
Confidence 01122 222 23 677765 4577888888766543211 0010000000000 11232 2 2
Q ss_pred CCcEEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEEEEeCCCC
Q 001380 847 NGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLDLNKE 923 (1089)
Q Consensus 847 ~G~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~~~~~~ 923 (1089)
+|.+|++.. ++.+..+|+.+|.+.=-. .+..+..++++ +|+||+.+. ++.|..++..++
T Consensus 256 ~~~vy~~~~-~g~l~ald~~tG~~~W~~---------------~~~~~~~~~~~-~~~vy~~~~-~g~l~ald~~tG 314 (394)
T PRK11138 256 GGVVYALAY-NGNLVALDLRSGQIVWKR---------------EYGSVNDFAVD-GGRIYLVDQ-NDRVYALDTRGG 314 (394)
T ss_pred CCEEEEEEc-CCeEEEEECCCCCEEEee---------------cCCCccCcEEE-CCEEEEEcC-CCeEEEEECCCC
Confidence 678999874 579999999887643211 11223344554 578999874 688999999776
No 419
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=97.39 E-value=0.001 Score=62.80 Aligned_cols=94 Identities=13% Similarity=0.129 Sum_probs=73.0
Q ss_pred cccCCCEEEEEEecC----CCcchhhhh--hhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeec
Q 001380 449 RDLKGKVVVLDFWTY----CCINCMHVL--PDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVND 522 (1089)
Q Consensus 449 ~~~~gk~vll~Fwa~----wC~~C~~~~--p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d 522 (1089)
..-.+|.++|+|+++ ||..|+..+ |.+.++-+ .++.+++.++. +.+
T Consensus 13 ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln----~~fv~w~~dv~------~~e------------------ 64 (116)
T cd02991 13 AKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYIN----TRMLFWACSVA------KPE------------------ 64 (116)
T ss_pred HHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHH----cCEEEEEEecC------ChH------------------
Confidence 344689999999999 999998775 34444433 35888888651 111
Q ss_pred CChhHHHHhCCCceeEEEEE---CCCCcEEEEecCCCchhhHHHHHHHHHHH
Q 001380 523 GDMNLWRELGVNSWPTFAVV---GPNGKLLAQLAGEGHRKDLDDLVEAALLF 571 (1089)
Q Consensus 523 ~~~~l~~~~~v~~~Pt~~li---d~~G~i~~~~~G~~~~~~l~~~l~~~l~~ 571 (1089)
..+++..+++..+|++.++ +.+.+++.+..|..+++++...|..++++
T Consensus 65 -g~~la~~l~~~~~P~~~~l~~~~~~~~vv~~i~G~~~~~~ll~~L~~~~~~ 115 (116)
T cd02991 65 -GYRVSQALRERTYPFLAMIMLKDNRMTIVGRLEGLIQPEDLINRLTFIMDA 115 (116)
T ss_pred -HHHHHHHhCCCCCCEEEEEEecCCceEEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 2689999999999999999 77777899999999999999998887754
No 420
>PTZ00420 coronin; Provisional
Probab=97.36 E-value=0.1 Score=63.05 Aligned_cols=216 Identities=11% Similarity=0.060 Sum_probs=124.8
Q ss_pred CceEEEeecCCeEEEEeCCCCEEEEEeCC-CC-EEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCE
Q 001380 603 PGKLAIDILNNRLFISDSNHNRIVVTDLD-GN-FIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHA 680 (1089)
Q Consensus 603 P~~vavd~~~g~L~vsd~~~~~I~~~~~~-g~-~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~ 680 (1089)
...++++|.++.++++-...+.|.+|+.. +. ....+... .. ...| .-.....++++|++..++++-..++.
T Consensus 77 V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p-~~-~L~g-----H~~~V~sVaf~P~g~~iLaSgS~Dgt 149 (568)
T PTZ00420 77 ILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDP-QC-ILKG-----HKKKISIIDWNPMNYYIMCSSGFDSF 149 (568)
T ss_pred EEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccc-eE-Eeec-----CCCcEEEEEECCCCCeEEEEEeCCCe
Confidence 45678887557788888888999999874 22 11111000 00 0000 01245789999988766666666889
Q ss_pred EEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEE-EEeCCCcc
Q 001380 681 LREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTR-AFSGDGYE 759 (1089)
Q Consensus 681 I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~-~~~g~g~~ 759 (1089)
|+.+|+.++......... .....++|+++|. ++++....+.|+.||+.++... .+.+..
T Consensus 150 IrIWDl~tg~~~~~i~~~-----------------~~V~SlswspdG~-lLat~s~D~~IrIwD~Rsg~~i~tl~gH~-- 209 (568)
T PTZ00420 150 VNIWDIENEKRAFQINMP-----------------KKLSSLKWNIKGN-LLSGTCVGKHMHIIDPRKQEIASSFHIHD-- 209 (568)
T ss_pred EEEEECCCCcEEEEEecC-----------------CcEEEEEECCCCC-EEEEEecCCEEEEEECCCCcEEEEEeccc--
Confidence 999999876543222111 1357899999985 4455555788999999887543 343321
Q ss_pred ccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCC---CeEEEEEcCCCC--eEEEecCCCCCCCCccccCCCCCccccc
Q 001380 760 RNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSES---SSIRALNLKTGG--SRLLAGGDPIFPDNLFKFGDRDGMGSEV 834 (1089)
Q Consensus 760 ~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~---~~I~~~~~~~~~--~~~~~g~~~~~~~~l~~~g~~dg~~~~~ 834 (1089)
+... ....++ ..++++++.|..+.... ..|+.++..... +..+.. + .
T Consensus 210 ----g~~~--s~~v~~--~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~l-d--------------~----- 261 (568)
T PTZ00420 210 ----GGKN--TKNIWI--DGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSI-D--------------N----- 261 (568)
T ss_pred ----CCce--eEEEEe--eeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEe-c--------------C-----
Confidence 0000 000011 12346765665554332 368888877321 111110 0 0
Q ss_pred cccCceEEEEcc-CCcEEEEeCCCCEEEEEeCCCCeEEEEe
Q 001380 835 LLQHPLGVYCAK-NGQIYVADSYNHKIKKLDPASNRVSTLA 874 (1089)
Q Consensus 835 ~l~~P~gva~~~-~G~lyVaD~~n~~I~~~d~~~~~v~t~~ 874 (1089)
-..+.--.+|+ +|.+|++-.+.+.|+.++...+.+..+.
T Consensus 262 -~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~ 301 (568)
T PTZ00420 262 -ASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVN 301 (568)
T ss_pred -CccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeec
Confidence 00111123444 5889999999999999998777766664
No 421
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=97.33 E-value=0.077 Score=60.13 Aligned_cols=197 Identities=20% Similarity=0.314 Sum_probs=104.5
Q ss_pred CeEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCC---cceeEEeeCCC---EEEEEECCC--CE--EE
Q 001380 613 NRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNR---PQGLAYNAKKN---LLYVADTEN--HA--LR 682 (1089)
Q Consensus 613 g~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~---P~gla~d~~g~---~lyVaD~~n--~~--I~ 682 (1089)
..++++-.-.+-+.++|++|+.+..+..+ . +|+ -.|+.+ .|. .+.++|..+ +. |+
T Consensus 68 kSlIigTdK~~GL~VYdL~Gk~lq~~~~G-r------------~NNVDvrygf~l--~g~~vDlavas~R~~g~n~l~~f 132 (381)
T PF02333_consen 68 KSLIIGTDKKGGLYVYDLDGKELQSLPVG-R------------PNNVDVRYGFPL--NGKTVDLAVASDRSDGRNSLRLF 132 (381)
T ss_dssp G-EEEEEETTTEEEEEETTS-EEEEE-SS--------------EEEEEEEEEEEE--TTEEEEEEEEEE-CCCT-EEEEE
T ss_pred cceEEEEeCCCCEEEEcCCCcEEEeecCC-C------------cceeeeecceec--CCceEEEEEEecCcCCCCeEEEE
Confidence 33444433356799999999998876432 1 111 123333 232 235556543 34 56
Q ss_pred EEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEe--cCCCEEEEE-ECCCcEEEEEE---CCCCe-----EE
Q 001380 683 EIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYK--PINEKVYIA-MAGQHQIWEHS---TVDGV-----TR 751 (1089)
Q Consensus 683 ~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~--~~g~~lyva-d~~~~~I~~~~---~~~g~-----~~ 751 (1089)
++|.+++.++.+...+.. ....+..|+|+|+- +..+.+|+- ....+.+..|- ...|. ++
T Consensus 133 ~id~~~g~L~~v~~~~~p----------~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR 202 (381)
T PF02333_consen 133 RIDPDTGELTDVTDPAAP----------IATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVR 202 (381)
T ss_dssp EEETTTTEEEE-CBTTC-----------EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEE
T ss_pred EecCCCCcceEcCCCCcc----------cccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEE
Confidence 778778888777532211 12235679999985 344455533 33345443332 22332 34
Q ss_pred EEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCC--CeEEEecCCCCCCCCccccCCCCC
Q 001380 752 AFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTG--GSRLLAGGDPIFPDNLFKFGDRDG 829 (1089)
Q Consensus 752 ~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~--~~~~~~g~~~~~~~~l~~~g~~dg 829 (1089)
.|.. ..|+.|+++|...+.||+++.. .-|+++..+.. ....+.. ....++
T Consensus 203 ~f~~----------------~sQ~EGCVVDDe~g~LYvgEE~-~GIW~y~Aep~~~~~~~~v~-----------~~~g~~ 254 (381)
T PF02333_consen 203 EFKV----------------GSQPEGCVVDDETGRLYVGEED-VGIWRYDAEPEGGNDRTLVA-----------SADGDG 254 (381)
T ss_dssp EEE-----------------SS-EEEEEEETTTTEEEEEETT-TEEEEEESSCCC-S--EEEE-----------EBSSSS
T ss_pred EecC----------------CCcceEEEEecccCCEEEecCc-cEEEEEecCCCCCCcceeee-----------cccccc
Confidence 4432 1389999999988899999965 67899987632 2211110 000001
Q ss_pred ccccccccCceEEEE--cc--CCcEEEEeCCCCEEEEEeCCC
Q 001380 830 MGSEVLLQHPLGVYC--AK--NGQIYVADSYNHKIKKLDPAS 867 (1089)
Q Consensus 830 ~~~~~~l~~P~gva~--~~--~G~lyVaD~~n~~I~~~d~~~ 867 (1089)
...-..||++ .. .|.|.|++-+++...+|+..+
T Consensus 255 -----l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 255 -----LVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREG 291 (381)
T ss_dssp -----B-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESST
T ss_pred -----cccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCC
Confidence 1223567776 33 457999999999999999764
No 422
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=97.33 E-value=0.069 Score=57.99 Aligned_cols=269 Identities=17% Similarity=0.222 Sum_probs=159.2
Q ss_pred CCCCCCCCCceEEEeecCCeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEE
Q 001380 595 LFTSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYV 673 (1089)
Q Consensus 595 ~~~~~l~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyV 673 (1089)
.....+..-..|++|| .+..|++.++...|-++|.. |+...++.+. ...-.|+++++..-++|-
T Consensus 146 Vi~gHlgWVr~vavdP-~n~wf~tgs~DrtikIwDlatg~LkltltGh--------------i~~vr~vavS~rHpYlFs 210 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDP-GNEWFATGSADRTIKIWDLATGQLKLTLTGH--------------IETVRGVAVSKRHPYLFS 210 (460)
T ss_pred hhhhccceEEEEeeCC-CceeEEecCCCceeEEEEcccCeEEEeecch--------------hheeeeeeecccCceEEE
Confidence 4566788888999998 78889999999999999987 6666666543 235689999987765554
Q ss_pred EECCCCEEEEEECCCCe-EEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCC-eEE
Q 001380 674 ADTENHALREIDFVNDT-VRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDG-VTR 751 (1089)
Q Consensus 674 aD~~n~~I~~~d~~~g~-v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g-~~~ 751 (1089)
+ .....|..+|+...+ |+... ..|+.-..++++|.- .+.++......++.||..+. .+.
T Consensus 211 ~-gedk~VKCwDLe~nkvIR~Yh-----------------GHlS~V~~L~lhPTl-dvl~t~grDst~RvWDiRtr~~V~ 271 (460)
T KOG0285|consen 211 A-GEDKQVKCWDLEYNKVIRHYH-----------------GHLSGVYCLDLHPTL-DVLVTGGRDSTIRVWDIRTRASVH 271 (460)
T ss_pred e-cCCCeeEEEechhhhhHHHhc-----------------cccceeEEEeccccc-eeEEecCCcceEEEeeecccceEE
Confidence 4 467889999997644 33333 246778899999977 67777777777888887654 455
Q ss_pred EEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeE-----------EEecCCCCCCCC
Q 001380 752 AFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSR-----------LLAGGDPIFPDN 820 (1089)
Q Consensus 752 ~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~-----------~~~g~~~~~~~~ 820 (1089)
.+.|..... ..+...+-+..+ ++.+..++|+.+|+..|... .++.. .-.+
T Consensus 272 ~l~GH~~~V---------------~~V~~~~~dpqv-it~S~D~tvrlWDl~agkt~~tlt~hkksvral~lh---P~e~ 332 (460)
T KOG0285|consen 272 VLSGHTNPV---------------ASVMCQPTDPQV-ITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLH---PKEN 332 (460)
T ss_pred EecCCCCcc---------------eeEEeecCCCce-EEecCCceEEEeeeccCceeEeeecccceeeEEecC---Cchh
Confidence 565533111 122222222133 34455667777776655432 12221 0113
Q ss_pred ccccCCCCCcc-----cccccc-----Cc--eEEEEccCCcEEEEeCCCCEEEEEeCCCCeEEEEecc-CCCCCCCCccc
Q 001380 821 LFKFGDRDGMG-----SEVLLQ-----HP--LGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGI-GKAGFKDGAAL 887 (1089)
Q Consensus 821 l~~~g~~dg~~-----~~~~l~-----~P--~gva~~~~G~lyVaD~~n~~I~~~d~~~~~v~t~~g~-g~~g~~~g~~~ 887 (1089)
+|.-+..|... ....++ .. ..+++.. ..+||+...|+.|...|..+|.-.....+ -.+|..+..
T Consensus 333 ~fASas~dnik~w~~p~g~f~~nlsgh~~iintl~~ns-D~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sE-- 409 (460)
T KOG0285|consen 333 LFASASPDNIKQWKLPEGEFLQNLSGHNAIINTLSVNS-DGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESE-- 409 (460)
T ss_pred hhhccCCccceeccCCccchhhccccccceeeeeeecc-CceEEEcCCceEEEEEecCcCcccccccccccCCccccc--
Confidence 34333333210 001111 11 2334433 35889999999999999877654433211 112211110
Q ss_pred ccccCCCceEEEccCCcEEEEECCCCEEEEEeCCCC
Q 001380 888 AAQLSEPAGIIEAQNGNLFIADTNNNIIRYLDLNKE 923 (1089)
Q Consensus 888 ~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~~~~~~ 923 (1089)
..-...|+|..|.-+|+.-....|.++.-+..
T Consensus 410 ----agI~as~fDktg~rlit~eadKtIk~~keDe~ 441 (460)
T KOG0285|consen 410 ----AGIFASCFDKTGSRLITGEADKTIKMYKEDEH 441 (460)
T ss_pred ----cceeEEeecccCceEEeccCCcceEEEecccc
Confidence 11234567777766666666677877766544
No 423
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=97.28 E-value=0.00075 Score=65.56 Aligned_cols=96 Identities=22% Similarity=0.138 Sum_probs=68.2
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCChHhHH----HHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCC
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSADRIKVD----ANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTS 240 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~----~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~ 240 (1089)
.+-+-++.|+.--.++|=.++.+|+..+-.++ .+.+.+.+. .+...++.++.. ||..----..+...++
T Consensus 114 IPKevA~qLI~MHq~RGD~i~FvTGRt~gk~d~vsk~Lak~F~i~-~m~pv~f~Gdk~---k~~qy~Kt~~i~~~~~--- 186 (237)
T COG3700 114 IPKEVARQLIDMHQRRGDAIYFVTGRTPGKTDTVSKTLAKNFHIT-NMNPVIFAGDKP---KPGQYTKTQWIQDKNI--- 186 (237)
T ss_pred chHHHHHHHHHHHHhcCCeEEEEecCCCCcccccchhHHhhcccC-CCcceeeccCCC---CcccccccHHHHhcCc---
Confidence 34455677788788899999999997664443 334455664 555666666522 3333333455666676
Q ss_pred cEEEEcCChhhHHHHHHcCCeEEEEcCC
Q 001380 241 ECIVIEDALAGVQAAKAAQMRCIAVTTT 268 (1089)
Q Consensus 241 ~~v~VGD~~~Di~aA~~aG~~~i~V~~g 268 (1089)
-++.||+-+||.+|+++|++.|-+.+.
T Consensus 187 -~IhYGDSD~Di~AAkeaG~RgIRilRA 213 (237)
T COG3700 187 -RIHYGDSDNDITAAKEAGARGIRILRA 213 (237)
T ss_pred -eEEecCCchhhhHHHhcCccceeEEec
Confidence 499999999999999999999999874
No 424
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=97.28 E-value=0.00089 Score=86.44 Aligned_cols=121 Identities=12% Similarity=0.204 Sum_probs=87.6
Q ss_pred CCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCC----ccEEEEcCCc----------------cCCCC
Q 001380 164 GIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSM----FDAIVSADAF----------------ENLKP 223 (1089)
Q Consensus 164 ~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~----fd~i~~~~~~----------------~~~KP 223 (1089)
.++.|++.+.++.|++.|+++.++|+.+.+.+..+.+++|+. .. .+..+++.+. -...-
T Consensus 536 Dplr~~v~e~I~~l~~aGI~v~miTGD~~~tA~~ia~~~gi~-~~~~~v~~~~~~g~~l~~~~~~~~~~~~~~~~v~ar~ 614 (917)
T TIGR01116 536 DPPRPEVADAIEKCRTAGIRVIMITGDNKETAEAICRRIGIF-SPDEDVTFKSFTGREFDEMGPAKQRAACRSAVLFSRV 614 (917)
T ss_pred CCCchhHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHcCCC-CCCccccceeeeHHHHhhCCHHHHHHhhhcCeEEEec
Confidence 467999999999999999999999999999999999999995 21 1122222111 11233
Q ss_pred CHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecC--cccC
Q 001380 224 APDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKE--IGSV 289 (1089)
Q Consensus 224 ~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~d--l~el 289 (1089)
.|+--.++++.++-..+.+.|+||+.||+.|.+.|++ +|..|.. .+..+..+|+++.+ |..+
T Consensus 615 ~P~~K~~iV~~lq~~g~~va~iGDG~ND~~alk~AdV---Gia~g~g-~~~ak~aAD~vl~dd~f~~i 678 (917)
T TIGR01116 615 EPSHKSELVELLQEQGEIVAMTGDGVNDAPALKKADI---GIAMGSG-TEVAKEASDMVLADDNFATI 678 (917)
T ss_pred CHHHHHHHHHHHHhcCCeEEEecCCcchHHHHHhCCe---eEECCCC-cHHHHHhcCeEEccCCHHHH
Confidence 3444466667776666789999999999999999995 5555532 23344568999877 6555
No 425
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.004 Score=59.46 Aligned_cols=109 Identities=19% Similarity=0.192 Sum_probs=74.4
Q ss_pred cCCCEEEEEEecCCCcchhhhhhhHH---HHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhH
Q 001380 451 LKGKVVVLDFWTYCCINCMHVLPDLE---FLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNL 527 (1089)
Q Consensus 451 ~~gk~vll~Fwa~wC~~C~~~~p~l~---~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l 527 (1089)
-.+|+.++.|-...|++|-..-.++. ++++-++. .+.++-+... .... +.-+ .|. ....-+..++
T Consensus 40 ~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~-hf~~~~l~i~-----~skp-v~f~---~g~--kee~~s~~EL 107 (182)
T COG2143 40 PNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKE-HFSAYYLNIS-----YSKP-VLFK---VGD--KEEKMSTEEL 107 (182)
T ss_pred ccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhh-CeEEEEEEec-----cCcc-eEee---cCc--eeeeecHHHH
Confidence 36899999999999999987655543 34444443 3666666321 0000 0000 000 0111234589
Q ss_pred HHHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHHH
Q 001380 528 WRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALLF 571 (1089)
Q Consensus 528 ~~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~~ 571 (1089)
|+.|+|+++|++++.|++|+.+....|...++++...++-+.+.
T Consensus 108 a~kf~vrstPtfvFfdk~Gk~Il~lPGY~ppe~Fl~vlkYVa~g 151 (182)
T COG2143 108 AQKFAVRSTPTFVFFDKTGKTILELPGYMPPEQFLAVLKYVADG 151 (182)
T ss_pred HHHhccccCceEEEEcCCCCEEEecCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998887765554
No 426
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.22 E-value=0.18 Score=55.05 Aligned_cols=320 Identities=14% Similarity=0.152 Sum_probs=176.4
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHHHhcccccccCCCCCcccccC---CCCC-CC---CCCCCCCc
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALLFYGKKKLLDNTPLPLSLEKD---NDPR-LF---TSPLKFPG 604 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~~~~~~~~l~~~~~~~~~~~~---~~~~-~~---~~~l~~P~ 604 (1089)
-...-|++...+++|.++-+. -.+...+.+.|.++...+...+.---...|...... --|+ .. ..+-+.|.
T Consensus 34 ~~~~~~~~~~~~~~g~ll~kk--wtSv~rlqKki~~Les~l~~~~~el~~g~pt~~~~~~~~wipRp~l~~~l~g~r~~v 111 (406)
T KOG0295|consen 34 HKEASLATEMRKKDGGLLEKK--WTSVDRLQKKIRELESKLDETGDELIAGDPTGSKRTPALWIPRPNLVQKLAGHRSSV 111 (406)
T ss_pred eecCCCcccccccccceeecc--ccccchhHHHHHHHHhhhcccccccccCCCCcCccChhhcCCCCCchhhhhccccce
Confidence 334456667778888877652 224555666666666655544321111111110000 0011 00 11122222
Q ss_pred -eEEEeecCCeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEE
Q 001380 605 -KLAIDILNNRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALR 682 (1089)
Q Consensus 605 -~vavd~~~g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~ 682 (1089)
-+-+.| +--+.++-+.+..|.++|.- |+....+.+. .+..+.|+++..|. +.++-...-.+.
T Consensus 112 t~v~~hp-~~~~v~~as~d~tikv~D~~tg~~e~~LrGH--------------t~sv~di~~~a~Gk-~l~tcSsDl~~~ 175 (406)
T KOG0295|consen 112 TRVIFHP-SEALVVSASEDATIKVFDTETGELERSLRGH--------------TDSVFDISFDASGK-YLATCSSDLSAK 175 (406)
T ss_pred eeeeecc-CceEEEEecCCceEEEEEccchhhhhhhhcc--------------ccceeEEEEecCcc-EEEecCCccchh
Confidence 222333 55566666677888888864 5554333322 23468999999887 333322222366
Q ss_pred EEECCCC--eEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEE-EEeCCCcc
Q 001380 683 EIDFVND--TVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTR-AFSGDGYE 759 (1089)
Q Consensus 683 ~~d~~~g--~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~-~~~g~g~~ 759 (1089)
.+|.+.- .++...|.. ..-..+++-|.|+.| .+....+.|..++..+|.+. +|.+..
T Consensus 176 LWd~~~~~~c~ks~~gh~-----------------h~vS~V~f~P~gd~i-lS~srD~tik~We~~tg~cv~t~~~h~-- 235 (406)
T KOG0295|consen 176 LWDFDTFFRCIKSLIGHE-----------------HGVSSVFFLPLGDHI-LSCSRDNTIKAWECDTGYCVKTFPGHS-- 235 (406)
T ss_pred heeHHHHHHHHHHhcCcc-----------------cceeeEEEEecCCee-eecccccceeEEecccceeEEeccCch--
Confidence 6665431 122222111 134567888888443 34445678888888888654 454321
Q ss_pred ccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCc
Q 001380 760 RNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHP 839 (1089)
Q Consensus 760 ~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P 839 (1089)
.+-.-+.+..|| .|+.+-+.+.+|+.+-..++.-+.+.-+-.+ +-.-.++..... ..+-....|
T Consensus 236 -------------ewvr~v~v~~DG-ti~As~s~dqtl~vW~~~t~~~k~~lR~hEh-~vEci~wap~~~-~~~i~~at~ 299 (406)
T KOG0295|consen 236 -------------EWVRMVRVNQDG-TIIASCSNDQTLRVWVVATKQCKAELREHEH-PVECIAWAPESS-YPSISEATG 299 (406)
T ss_pred -------------HhEEEEEecCCe-eEEEecCCCceEEEEEeccchhhhhhhcccc-ceEEEEeccccc-CcchhhccC
Confidence 255678899998 9999999999999988776522111000000 000000000000 000000111
Q ss_pred eEEEEccCCcEEEEeCCCCEEEEEeCCCCeE-EEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEEEE
Q 001380 840 LGVYCAKNGQIYVADSYNHKIKKLDPASNRV-STLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYL 918 (1089)
Q Consensus 840 ~gva~~~~G~lyVaD~~n~~I~~~d~~~~~v-~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~ 918 (1089)
.+ ..|.+.++-+..+.|+.+|..++.+ .|+.| ..+.-.|+++.+.|+-+++-..+..++++
T Consensus 300 ~~----~~~~~l~s~SrDktIk~wdv~tg~cL~tL~g--------------hdnwVr~~af~p~Gkyi~ScaDDktlrvw 361 (406)
T KOG0295|consen 300 ST----NGGQVLGSGSRDKTIKIWDVSTGMCLFTLVG--------------HDNWVRGVAFSPGGKYILSCADDKTLRVW 361 (406)
T ss_pred CC----CCccEEEeecccceEEEEeccCCeEEEEEec--------------ccceeeeeEEcCCCeEEEEEecCCcEEEE
Confidence 10 1346778888889999999887765 56665 45778999999999988888889999999
Q ss_pred eCCCC
Q 001380 919 DLNKE 923 (1089)
Q Consensus 919 ~~~~~ 923 (1089)
+++..
T Consensus 362 dl~~~ 366 (406)
T KOG0295|consen 362 DLKNL 366 (406)
T ss_pred Eeccc
Confidence 99887
No 427
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=97.20 E-value=0.06 Score=61.17 Aligned_cols=133 Identities=17% Similarity=0.223 Sum_probs=75.8
Q ss_pred CceeEEEecCCCEEEEEECCC------cEEEEEECCCCeEEEEeC-CCccccCC--CCCCCCccccCCceEEEcCCCCEE
Q 001380 717 SPWDVCYKPINEKVYIAMAGQ------HQIWEHSTVDGVTRAFSG-DGYERNLN--GSSSLNTSFAQPSGISLSPDFMEI 787 (1089)
Q Consensus 717 ~P~~la~~~~g~~lyvad~~~------~~I~~~~~~~g~~~~~~g-~g~~~~~~--g~~~~~~~~~~P~glav~~~g~~l 787 (1089)
.+-+|++.+ ++.+||++.+. +.|++++..+.....+.- .......+ .....+. ..-|||++++|+.|
T Consensus 86 D~Egi~~~~-~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~---G~E~la~~~dG~~l 161 (326)
T PF13449_consen 86 DPEGIAVPP-DGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNR---GFEGLAVSPDGRTL 161 (326)
T ss_pred ChhHeEEec-CCCEEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCC---CeEEEEECCCCCEE
Confidence 778999954 45999999999 999999988555455521 11100000 0001111 24599999999778
Q ss_pred EEEeCCC---------------CeEEEEEcCCCC--eEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccCCcE
Q 001380 788 YVADSES---------------SSIRALNLKTGG--SRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQI 850 (1089)
Q Consensus 788 yvad~~~---------------~~I~~~~~~~~~--~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~l 850 (1089)
|++-... -+|..+++.+.. ...+ .|..-.. .....-..+..++..++|++
T Consensus 162 ~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~----------~y~ld~~---~~~~~~~~isd~~al~d~~l 228 (326)
T PF13449_consen 162 FAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEY----------AYPLDPP---PTAPGDNGISDIAALPDGRL 228 (326)
T ss_pred EEEECccccCCCcccccccCceEEEEEecCCCCCccceEE----------EEeCCcc---ccccCCCCceeEEEECCCcE
Confidence 8876432 245555554311 1111 1111000 00002335777888889999
Q ss_pred EEEeCC-------CCEEEEEeCC
Q 001380 851 YVADSY-------NHKIKKLDPA 866 (1089)
Q Consensus 851 yVaD~~-------n~~I~~~d~~ 866 (1089)
||-+.. ..+|++++..
T Consensus 229 LvLER~~~~~~~~~~ri~~v~l~ 251 (326)
T PF13449_consen 229 LVLERDFSPGTGNYKRIYRVDLS 251 (326)
T ss_pred EEEEccCCCCccceEEEEEEEcc
Confidence 998755 3467777754
No 428
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=97.16 E-value=0.0088 Score=64.81 Aligned_cols=105 Identities=15% Similarity=0.164 Sum_probs=75.9
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCChHhH---HHHHHHCCCCCCCcc----EEE-----Ec-C----------CccCC
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSADRIKV---DANLAAAGLPVSMFD----AIV-----SA-D----------AFENL 221 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~---~~~l~~~gl~~~~fd----~i~-----~~-~----------~~~~~ 221 (1089)
..-+.+.+++..|++.|+++..+|.....+. .+.|+++|++..--. ..+ .. . -+..+
T Consensus 81 lie~~~~~~i~~lq~~~~~v~alT~~~~~~~~~t~~~Lk~~gi~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~GIlft~~ 160 (252)
T PF11019_consen 81 LIESDVPNIINSLQNKGIPVIALTARGPNMEDWTLRELKSLGIDFSSSSFPEDGIISFPVFDSALSRAPSFYDGILFTGG 160 (252)
T ss_pred EcchhHHHHHHHHHHCCCcEEEEcCCChhhHHHHHHHHHHCCCCccccccccCcceecccccCCCCCCceeecCeEEeCC
Confidence 4567899999999999999999999766554 445667788611110 000 00 0 01225
Q ss_pred CCCHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHH----HcCCeEEEEcCCC
Q 001380 222 KPAPDIFLSASKILNVPTSECIVIEDALAGVQAAK----AAQMRCIAVTTTL 269 (1089)
Q Consensus 222 KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~----~aG~~~i~V~~g~ 269 (1089)
-.+.+++...+++.|..|+.+|||.|+...+.... ..|+.++++....
T Consensus 161 ~~KG~~L~~fL~~~~~~pk~IIfIDD~~~nl~sv~~a~k~~~I~f~G~~Yt~ 212 (252)
T PF11019_consen 161 QDKGEVLKYFLDKINQSPKKIIFIDDNKENLKSVEKACKKSGIDFIGFHYTG 212 (252)
T ss_pred CccHHHHHHHHHHcCCCCCeEEEEeCCHHHHHHHHHHHhhCCCcEEEEEEcc
Confidence 67789999999999999999999999997776544 4688999987753
No 429
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=97.15 E-value=0.0014 Score=64.77 Aligned_cols=101 Identities=18% Similarity=0.200 Sum_probs=47.6
Q ss_pred cccCCCEEEEEEecCCCcchhhhhh------hHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeec
Q 001380 449 RDLKGKVVVLDFWTYCCINCMHVLP------DLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVND 522 (1089)
Q Consensus 449 ~~~~gk~vll~Fwa~wC~~C~~~~p------~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d 522 (1089)
+.-.+|+++|++.++||..|..+.. ++.++.++ .+.-|-| +.++.++--..+..
T Consensus 33 Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~----~FI~Vkv-----Dree~Pdid~~y~~----------- 92 (163)
T PF03190_consen 33 AKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNR----NFIPVKV-----DREERPDIDKIYMN----------- 92 (163)
T ss_dssp HHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHH----H-EEEEE-----ETTT-HHHHHHHHH-----------
T ss_pred HHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhC----CEEEEEe-----ccccCccHHHHHHH-----------
Confidence 4556899999999999999997643 33333222 2433334 22222221111110
Q ss_pred CChhHHHHhCCCceeEEEEECCCCcEEEEecC--C---CchhhHHHHHHHHHHHh
Q 001380 523 GDMNLWRELGVNSWPTFAVVGPNGKLLAQLAG--E---GHRKDLDDLVEAALLFY 572 (1089)
Q Consensus 523 ~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~G--~---~~~~~l~~~l~~~l~~~ 572 (1089)
......|..+||++++++|+|+.++.... . .....+.++|..+.+..
T Consensus 93 ---~~~~~~~~gGwPl~vfltPdg~p~~~~tY~P~~~~~g~~~f~~~l~~i~~~w 144 (163)
T PF03190_consen 93 ---AVQAMSGSGGWPLTVFLTPDGKPFFGGTYFPPEDRYGRPGFLQLLERIAELW 144 (163)
T ss_dssp ---HHHHHHS---SSEEEEE-TTS-EEEEESS--SS-BTTB--HHHHHHHHHHHH
T ss_pred ---HHHHhcCCCCCCceEEECCCCCeeeeeeecCCCCCCCCccHHHHHHHHHHHH
Confidence 11122378899999999999999886321 1 12235555555554443
No 430
>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=97.15 E-value=0.0046 Score=58.74 Aligned_cols=79 Identities=22% Similarity=0.188 Sum_probs=52.2
Q ss_pred CeEEEEcCC--------ChHhHHHHHHHCCCCCCCccEEEEcCCccCCCC--CHHHHHHHHHHcC-CCCCcEEEEcCCh-
Q 001380 182 LKVAVASSA--------DRIKVDANLAAAGLPVSMFDAIVSADAFENLKP--APDIFLSASKILN-VPTSECIVIEDAL- 249 (1089)
Q Consensus 182 i~vaIvSn~--------~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP--~~~~~~~~l~~lg-v~p~~~v~VGD~~- 249 (1089)
..++|+||. +.+.+..+-++.|++ .+-.+ ..|| ..+.+.+....-. ..++|++||||++
T Consensus 80 k~i~v~SNsaG~~~~D~d~s~Ak~le~k~gIp-----VlRHs----~kKP~ct~E~~~y~~~Nshv~~~se~~~vGDRlf 150 (190)
T KOG2961|consen 80 KDIAVFSNSAGLTEYDHDDSKAKALEAKIGIP-----VLRHS----VKKPACTAEEVEYHFGNSHVCTSSELIMVGDRLF 150 (190)
T ss_pred ccEEEEecCcCccccCCchHHHHHHHHhhCCc-----eEeec----ccCCCccHHHHHHHhCCcccCChhHeEEEccchh
Confidence 457888873 223445555566775 11111 1233 2344444433223 4789999999999
Q ss_pred hhHHHHHHcCCeEEEEcCCC
Q 001380 250 AGVQAAKAAQMRCIAVTTTL 269 (1089)
Q Consensus 250 ~Di~aA~~aG~~~i~V~~g~ 269 (1089)
+||..|...|-..+|...|+
T Consensus 151 TDI~~aN~mGs~gVw~~~gv 170 (190)
T KOG2961|consen 151 TDIVYANRMGSLGVWTEPGV 170 (190)
T ss_pred hhHhhhhhccceeEEecccc
Confidence 99999999999999999886
No 431
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.13 E-value=0.065 Score=55.05 Aligned_cols=229 Identities=14% Similarity=0.188 Sum_probs=138.2
Q ss_pred CCeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEEEEECCCCe
Q 001380 612 NNRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNDT 690 (1089)
Q Consensus 612 ~g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~ 690 (1089)
+|+.-++=.....|..|++- |..+++..+.|. ....+++..++. -+.+..+...++.+|.++|+
T Consensus 28 dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~--------------EVlD~~~s~Dns-kf~s~GgDk~v~vwDV~TGk 92 (307)
T KOG0316|consen 28 DGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGH--------------EVLDAALSSDNS-KFASCGGDKAVQVWDVNTGK 92 (307)
T ss_pred CCCEEEEcCCCceEEeecccccceeeeecCCCc--------------eeeecccccccc-ccccCCCCceEEEEEcccCe
Confidence 45544444444556667775 777877766543 334555655554 46666678899999998887
Q ss_pred EEE-EecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCe---EEEEeCCCccccCCCCC
Q 001380 691 VRT-LAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGV---TRAFSGDGYERNLNGSS 766 (1089)
Q Consensus 691 v~~-~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~---~~~~~g~g~~~~~~g~~ 766 (1089)
+.+ +.|.+. .-+.|.|+.+. .+.++..-...++.||=.... ++.+.
T Consensus 93 v~Rr~rgH~a-----------------qVNtV~fNees-SVv~SgsfD~s~r~wDCRS~s~ePiQild------------ 142 (307)
T KOG0316|consen 93 VDRRFRGHLA-----------------QVNTVRFNEES-SVVASGSFDSSVRLWDCRSRSFEPIQILD------------ 142 (307)
T ss_pred eeeecccccc-----------------eeeEEEecCcc-eEEEeccccceeEEEEcccCCCCccchhh------------
Confidence 655 433332 34567777665 666666666778777754332 22222
Q ss_pred CCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCc-eEEEEc
Q 001380 767 SLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHP-LGVYCA 845 (1089)
Q Consensus 767 ~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P-~gva~~ 845 (1089)
.....-+.|.++ + ...|+-+-.+++|.++...|.... -.+.+| ..+.++
T Consensus 143 ---ea~D~V~Si~v~--~-heIvaGS~DGtvRtydiR~G~l~s------------------------Dy~g~pit~vs~s 192 (307)
T KOG0316|consen 143 ---EAKDGVSSIDVA--E-HEIVAGSVDGTVRTYDIRKGTLSS------------------------DYFGHPITSVSFS 192 (307)
T ss_pred ---hhcCceeEEEec--c-cEEEeeccCCcEEEEEeecceeeh------------------------hhcCCcceeEEec
Confidence 111223344443 3 778898999999999987553321 114455 578899
Q ss_pred cCCcEEEEeCCCCEEEEEeCCCCeEEE-EeccCCCCCCCCcccccccCCCceEEEc--cCCcEEEEECCC-CEEEEEe
Q 001380 846 KNGQIYVADSYNHKIKKLDPASNRVST-LAGIGKAGFKDGAALAAQLSEPAGIIEA--QNGNLFIADTNN-NIIRYLD 919 (1089)
Q Consensus 846 ~~G~lyVaD~~n~~I~~~d~~~~~v~t-~~g~g~~g~~~g~~~~~~l~~P~gi~vd--~~G~lyVad~~n-~~I~~~~ 919 (1089)
++|+...+..-+..|+.+|..+|++.. ..|.-+.. ......|++-.-..+. .||.+|+-|.-+ +.|.++.
T Consensus 193 ~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~e----ykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~ 266 (307)
T KOG0316|consen 193 KDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNME----YKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLS 266 (307)
T ss_pred CCCCEEEEeeccceeeecccchhHHHHHhcccccce----eeeeeeecccceeEEeccCCceEEEEEeccceeeeeec
Confidence 999999999999999999998876543 22222111 1233455555555553 356677766543 3333433
No 432
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=97.09 E-value=0.0022 Score=63.95 Aligned_cols=41 Identities=29% Similarity=0.589 Sum_probs=32.8
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEE
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGV 492 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v 492 (1089)
.++++|+.|+.++||+|....|.+.++..++.+..+.+..+
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~ 44 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDPDVRVVFKEF 44 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEeC
Confidence 46889999999999999999999999888876433444433
No 433
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=97.08 E-value=0.003 Score=65.11 Aligned_cols=88 Identities=22% Similarity=0.281 Sum_probs=64.0
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCChHh----HHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCC
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSADRIK----VDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTS 240 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~----~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~ 240 (1089)
.+.||+.|++.+.-++|..|+.+||+..+. ....|+..|++...-+.++-- ...|++..-+..+.+.+.+
T Consensus 122 k~vpGA~eFl~Yvn~~Gg~ifyiSNR~~~~~~~~T~~nLk~~g~~~~~~~~~llk---k~~k~Ke~R~~~v~k~~~i--- 195 (274)
T COG2503 122 KAVPGAVEFLNYVNSNGGKIFYISNRDQENEKDGTIENLKSEGLPQVLESHLLLK---KDKKSKEVRRQAVEKDYKI--- 195 (274)
T ss_pred ccCccHHHHHHHHHhcCcEEEEEeccchhcccchhHHHHHHcCcccccccceEEe---eCCCcHHHHHHHHhhccce---
Confidence 689999999999999999999999987655 556678888872223333332 2356666666666664444
Q ss_pred cEEEEcCChhhHHHHHHcC
Q 001380 241 ECIVIEDALAGVQAAKAAQ 259 (1089)
Q Consensus 241 ~~v~VGD~~~Di~aA~~aG 259 (1089)
++.|||.+.|.-.....+
T Consensus 196 -Vm~vGDNl~DF~d~~~k~ 213 (274)
T COG2503 196 -VMLVGDNLDDFGDNAYKK 213 (274)
T ss_pred -eeEecCchhhhcchhhhh
Confidence 899999998876554444
No 434
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.08 E-value=0.62 Score=54.18 Aligned_cols=244 Identities=16% Similarity=0.189 Sum_probs=127.4
Q ss_pred EEeecCCeEEEEeCCCCEEEEEeC-CCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEEEEE
Q 001380 607 AIDILNNRLFISDSNHNRIVVTDL-DGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREID 685 (1089)
Q Consensus 607 avd~~~g~L~vsd~~~~~I~~~~~-~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~~d 685 (1089)
+++ ++.+|+... ++.++.+|. +|+.+......+. ....| ++. ++.+|+.. .++.|+.+|
T Consensus 102 ~v~--~~~v~v~~~-~g~l~ald~~tG~~~W~~~~~~~-----------~~~~p---~v~--~~~v~v~~-~~g~l~a~d 161 (377)
T TIGR03300 102 GAD--GGLVFVGTE-KGEVIALDAEDGKELWRAKLSSE-----------VLSPP---LVA--NGLVVVRT-NDGRLTALD 161 (377)
T ss_pred EEc--CCEEEEEcC-CCEEEEEECCCCcEeeeeccCce-----------eecCC---EEE--CCEEEEEC-CCCeEEEEE
Confidence 454 788888764 578999998 5888776543311 01122 222 34477764 467899999
Q ss_pred CCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCccccCCCC
Q 001380 686 FVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGS 765 (1089)
Q Consensus 686 ~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~~~~g~ 765 (1089)
.++|.+.--......... .....+| + +. ++.+|+.. .++.+..+|+.+|....-...+........
T Consensus 162 ~~tG~~~W~~~~~~~~~~--------~~~~~sp--~-~~--~~~v~~~~-~~g~v~ald~~tG~~~W~~~~~~~~g~~~~ 227 (377)
T TIGR03300 162 AATGERLWTYSRVTPALT--------LRGSASP--V-IA--DGGVLVGF-AGGKLVALDLQTGQPLWEQRVALPKGRTEL 227 (377)
T ss_pred cCCCceeeEEccCCCcee--------ecCCCCC--E-EE--CCEEEEEC-CCCEEEEEEccCCCEeeeeccccCCCCCch
Confidence 987765433221110000 0001122 2 22 24676654 457899999988865432111000000000
Q ss_pred CCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEc
Q 001380 766 SSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCA 845 (1089)
Q Consensus 766 ~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~ 845 (1089)
.........| .+. ++.+|+++. .+.++.++.++|....-.. .+ .....+++
T Consensus 228 ~~~~~~~~~p---~~~--~~~vy~~~~-~g~l~a~d~~tG~~~W~~~-----------~~------------~~~~p~~~ 278 (377)
T TIGR03300 228 ERLVDVDGDP---VVD--GGQVYAVSY-QGRVAALDLRSGRVLWKRD-----------AS------------SYQGPAVD 278 (377)
T ss_pred hhhhccCCcc---EEE--CCEEEEEEc-CCEEEEEECCCCcEEEeec-----------cC------------CccCceEe
Confidence 0000000111 222 348998875 5789999998775532211 00 11122333
Q ss_pred cCCcEEEEeCCCCEEEEEeCCCCeEE-EEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEEEEeCCCCC
Q 001380 846 KNGQIYVADSYNHKIKKLDPASNRVS-TLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLDLNKEE 924 (1089)
Q Consensus 846 ~~G~lyVaD~~n~~I~~~d~~~~~v~-t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~~~~~~~ 924 (1089)
+|++|+++ .++.|..+|..++.+. .....+ . .....| ++. ++.||+.+ .++.|..++..++
T Consensus 279 -~~~vyv~~-~~G~l~~~d~~tG~~~W~~~~~~-----~-----~~~ssp---~i~-g~~l~~~~-~~G~l~~~d~~tG- 340 (377)
T TIGR03300 279 -DNRLYVTD-ADGVVVALDRRSGSELWKNDELK-----Y-----RQLTAP---AVV-GGYLVVGD-FEGYLHWLSREDG- 340 (377)
T ss_pred -CCEEEEEC-CCCeEEEEECCCCcEEEcccccc-----C-----CccccC---EEE-CCEEEEEe-CCCEEEEEECCCC-
Confidence 67899986 5689999999877543 111100 0 022333 333 45788876 4578999998765
Q ss_pred ceEEEEe
Q 001380 925 PELQTLE 931 (1089)
Q Consensus 925 ~~~~~l~ 931 (1089)
..+..+.
T Consensus 341 ~~~~~~~ 347 (377)
T TIGR03300 341 SFVARLK 347 (377)
T ss_pred CEEEEEE
Confidence 2344444
No 435
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.07 E-value=0.098 Score=62.03 Aligned_cols=264 Identities=17% Similarity=0.233 Sum_probs=160.8
Q ss_pred CceEEEeecCCeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEE
Q 001380 603 PGKLAIDILNNRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHAL 681 (1089)
Q Consensus 603 P~~vavd~~~g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I 681 (1089)
-.+++++ ++.+.+...++++|..|+.+ ++-+++++.. .-.+..+-|.++ ..|..+.|+.+
T Consensus 376 VRsl~vS--~d~~~~~Sga~~SikiWn~~t~kciRTi~~~----------------y~l~~~Fvpgd~-~Iv~G~k~Gel 436 (888)
T KOG0306|consen 376 VRSLCVS--SDSILLASGAGESIKIWNRDTLKCIRTITCG----------------YILASKFVPGDR-YIVLGTKNGEL 436 (888)
T ss_pred eeEEEee--cCceeeeecCCCcEEEEEccCcceeEEeccc----------------cEEEEEecCCCc-eEEEeccCCce
Confidence 3467887 45566666677899999988 8888888654 235666666555 66777889999
Q ss_pred EEEECCCCe-EEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCccc
Q 001380 682 REIDFVNDT-VRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYER 760 (1089)
Q Consensus 682 ~~~d~~~g~-v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~ 760 (1089)
..||+.+.. +.++-.. =.--|.|++.|++ .=+++....+.|.-||.. ....-.|...
T Consensus 437 ~vfdlaS~~l~Eti~AH-----------------dgaIWsi~~~pD~-~g~vT~saDktVkfWdf~----l~~~~~gt~~ 494 (888)
T KOG0306|consen 437 QVFDLASASLVETIRAH-----------------DGAIWSISLSPDN-KGFVTGSADKTVKFWDFK----LVVSVPGTQK 494 (888)
T ss_pred EEEEeehhhhhhhhhcc-----------------ccceeeeeecCCC-CceEEecCCcEEEEEeEE----EEeccCcccc
Confidence 999987643 3333210 0156899999988 667777777887777642 1111001000
Q ss_pred cCCCCCCCCccc---cCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeE-EEecC-CCCC----------------CC
Q 001380 761 NLNGSSSLNTSF---AQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSR-LLAGG-DPIF----------------PD 819 (1089)
Q Consensus 761 ~~~g~~~~~~~~---~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~-~~~g~-~~~~----------------~~ 819 (1089)
.+ -+......+ .+-..+.++||| .+.++.--+++|.+|-+++-... .+-|+ -|.. -+
T Consensus 495 k~-lsl~~~rtLel~ddvL~v~~Spdg-k~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADK 572 (888)
T KOG0306|consen 495 KV-LSLKHTRTLELEDDVLCVSVSPDG-KLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADK 572 (888)
T ss_pred ee-eeeccceEEeccccEEEEEEcCCC-cEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCC
Confidence 00 000000111 245678899999 55555555677776665532110 11111 0000 01
Q ss_pred CccccCCCCCccccccccC---ceEEEEccCCcEEEEeCCCCEEEEEeCCC-CeEEEEeccCCCCCCCCcccccccCCCc
Q 001380 820 NLFKFGDRDGMGSEVLLQH---PLGVYCAKNGQIYVADSYNHKIKKLDPAS-NRVSTLAGIGKAGFKDGAALAAQLSEPA 895 (1089)
Q Consensus 820 ~l~~~g~~dg~~~~~~l~~---P~gva~~~~G~lyVaD~~n~~I~~~d~~~-~~v~t~~g~g~~g~~~g~~~~~~l~~P~ 895 (1089)
+.--+|-.-|.+....|.| -..|.+-|+-+++++-...++|+++|-.. ..+.++.| ...+-.
T Consensus 573 nVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~--------------H~~ev~ 638 (888)
T KOG0306|consen 573 NVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDG--------------HHSEVW 638 (888)
T ss_pred ceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeecc--------------chheee
Confidence 1112222223333333443 35677788889999999999999998532 23445443 567789
Q ss_pred eEEEccCCcEEEEECCCCEEEEEeCCCC
Q 001380 896 GIIEAQNGNLFIADTNNNIIRYLDLNKE 923 (1089)
Q Consensus 896 gi~vd~~G~lyVad~~n~~I~~~~~~~~ 923 (1089)
.+++.++|...|+.+..+.|+.+.....
T Consensus 639 cLav~~~G~~vvs~shD~sIRlwE~tde 666 (888)
T KOG0306|consen 639 CLAVSPNGSFVVSSSHDKSIRLWERTDE 666 (888)
T ss_pred eeEEcCCCCeEEeccCCceeEeeeccCc
Confidence 9999999999999999999999987664
No 436
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.07 E-value=0.0028 Score=67.84 Aligned_cols=107 Identities=19% Similarity=0.264 Sum_probs=69.5
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCC-Ch-------------hcHHHHHHHHHHcCCcc
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFD-NE-------------KDLEAIRNAVLRYGISH 517 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~-~~-------------~~~~~~~~~~~~~~~~~ 517 (1089)
.||.+|+.|.-+-||+|++.++++.++.+ .++.+.-+..+-.. +. +..+++.++.....++-
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~----~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~ 181 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNA----LGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSP 181 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhc----CCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCc
Confidence 57899999999999999999999887754 35666555443211 11 11223333333322221
Q ss_pred c---eeecCChhHHHHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHH
Q 001380 518 P---VVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEA 567 (1089)
Q Consensus 518 ~---v~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~ 567 (1089)
. ...+.+.++++++||+++|++++ ++|+.+ .|....+.+.++|++
T Consensus 182 ~~c~~~v~~~~~la~~lgi~gTPtiv~--~~G~~~---~G~~~~~~L~~~l~~ 229 (232)
T PRK10877 182 ASCDVDIADHYALGVQFGVQGTPAIVL--SNGTLV---PGYQGPKEMKAFLDE 229 (232)
T ss_pred ccccchHHHhHHHHHHcCCccccEEEE--cCCeEe---eCCCCHHHHHHHHHH
Confidence 1 11234668899999999999884 467764 788888888888764
No 437
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.05 E-value=0.071 Score=54.80 Aligned_cols=192 Identities=17% Similarity=0.236 Sum_probs=130.2
Q ss_pred ceeEEeeCCCEEEEEECCCCEEEEEECCCC-eEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCc
Q 001380 660 QGLAYNAKKNLLYVADTENHALREIDFVND-TVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQH 738 (1089)
Q Consensus 660 ~gla~d~~g~~lyVaD~~n~~I~~~d~~~g-~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~ 738 (1089)
..+.++-+|| .-++-.....|+.+++..| .+.+..|.|. .-.+++...++ .=+.+..+..
T Consensus 21 ~avryN~dGn-Y~ltcGsdrtvrLWNp~rg~liktYsghG~-----------------EVlD~~~s~Dn-skf~s~GgDk 81 (307)
T KOG0316|consen 21 RAVRYNVDGN-YCLTCGSDRTVRLWNPLRGALIKTYSGHGH-----------------EVLDAALSSDN-SKFASCGGDK 81 (307)
T ss_pred EEEEEccCCC-EEEEcCCCceEEeecccccceeeeecCCCc-----------------eeeeccccccc-cccccCCCCc
Confidence 4455666788 3444445667888988665 5788888774 34566666554 5566677788
Q ss_pred EEEEEECCCCeE-EEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCC
Q 001380 739 QIWEHSTVDGVT-RAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIF 817 (1089)
Q Consensus 739 ~I~~~~~~~g~~-~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~ 817 (1089)
.+..||-.+|++ +.|.|.+ +|-+.+.++.+. .+.++-+..+++|.++-.......+.-
T Consensus 82 ~v~vwDV~TGkv~Rr~rgH~---------------aqVNtV~fNees-SVv~SgsfD~s~r~wDCRS~s~ePiQi----- 140 (307)
T KOG0316|consen 82 AVQVWDVNTGKVDRRFRGHL---------------AQVNTVRFNEES-SVVASGSFDSSVRLWDCRSRSFEPIQI----- 140 (307)
T ss_pred eEEEEEcccCeeeeeccccc---------------ceeeEEEecCcc-eEEEeccccceeEEEEcccCCCCccch-----
Confidence 899999988865 5666543 466778888776 888888888999999866433221100
Q ss_pred CCCccccCCCCCccccccccCceEEEEccCCcEEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCC-Cce
Q 001380 818 PDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSE-PAG 896 (1089)
Q Consensus 818 ~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~-P~g 896 (1089)
+. -..| .-.. ++-.++..|+.+-.+++++||...|++..= -+.. -+.
T Consensus 141 ----ld-ea~D---------~V~S--i~v~~heIvaGS~DGtvRtydiR~G~l~sD----------------y~g~pit~ 188 (307)
T KOG0316|consen 141 ----LD-EAKD---------GVSS--IDVAEHEIVAGSVDGTVRTYDIRKGTLSSD----------------YFGHPITS 188 (307)
T ss_pred ----hh-hhcC---------ceeE--EEecccEEEeeccCCcEEEEEeecceeehh----------------hcCCccee
Confidence 00 0111 1223 344578889999999999999866654331 1222 457
Q ss_pred EEEccCCcEEEEECCCCEEEEEeCCCC
Q 001380 897 IIEAQNGNLFIADTNNNIIRYLDLNKE 923 (1089)
Q Consensus 897 i~vd~~G~lyVad~~n~~I~~~~~~~~ 923 (1089)
+++.++|+-..+...+..|+.++..++
T Consensus 189 vs~s~d~nc~La~~l~stlrLlDk~tG 215 (307)
T KOG0316|consen 189 VSFSKDGNCSLASSLDSTLRLLDKETG 215 (307)
T ss_pred EEecCCCCEEEEeeccceeeecccchh
Confidence 889999998888888999999998876
No 438
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=97.05 E-value=0.41 Score=53.42 Aligned_cols=137 Identities=15% Similarity=0.100 Sum_probs=85.9
Q ss_pred CceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEe-CCCccccCCCCCCCCccccCCceEEEc----CCCCEEEEEe
Q 001380 717 SPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFS-GDGYERNLNGSSSLNTSFAQPSGISLS----PDFMEIYVAD 791 (1089)
Q Consensus 717 ~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~-g~g~~~~~~g~~~~~~~~~~P~glav~----~~g~~lyvad 791 (1089)
...+|..+++| .++|+....+.|++++..+|.+.... |... ..... ....|.+-+...+- .++ .|-+-|
T Consensus 145 HiNsV~~~~~G-~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~-~df~~---~~~~f~~QHdar~~~~~~~~~-~IslFD 218 (299)
T PF14269_consen 145 HINSVDKDDDG-DYLISSRNTSTIYKIDPSTGKIIWRLGGKRN-SDFTL---PATNFSWQHDARFLNESNDDG-TISLFD 218 (299)
T ss_pred EeeeeeecCCc-cEEEEecccCEEEEEECCCCcEEEEeCCCCC-Ccccc---cCCcEeeccCCEEeccCCCCC-EEEEEc
Confidence 45567788877 67799999999999999988777554 3311 11111 23456666666665 444 777766
Q ss_pred C----------CCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccCCcEEEEeCCCCEEE
Q 001380 792 S----------ESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIK 861 (1089)
Q Consensus 792 ~----------~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~lyVaD~~n~~I~ 861 (1089)
. ..++|..+++.+..++.+..-. ..+..++.. ..-.+-..++|+++|.....+++.
T Consensus 219 N~~~~~~~~~~s~~~v~~ld~~~~~~~~~~~~~-~~~~~~~s~-------------~~G~~Q~L~nGn~li~~g~~g~~~ 284 (299)
T PF14269_consen 219 NANSDFNGTEPSRGLVLELDPETMTVTLVREYS-DHPDGFYSP-------------SQGSAQRLPNGNVLIGWGNNGRIS 284 (299)
T ss_pred CCCCCCCCCcCCCceEEEEECCCCEEEEEEEee-cCCCccccc-------------CCCcceECCCCCEEEecCCCceEE
Confidence 6 3567888888855554443210 001111110 111233457899999999999999
Q ss_pred EEeCCCCeEEEE
Q 001380 862 KLDPASNRVSTL 873 (1089)
Q Consensus 862 ~~d~~~~~v~t~ 873 (1089)
.+++++..+-.+
T Consensus 285 E~~~~G~vv~~~ 296 (299)
T PF14269_consen 285 EFTPDGEVVWEA 296 (299)
T ss_pred EECCCCCEEEEE
Confidence 999987666543
No 439
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=97.04 E-value=0.16 Score=57.05 Aligned_cols=158 Identities=14% Similarity=0.108 Sum_probs=86.8
Q ss_pred eEEEeecCCeEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEEEE
Q 001380 605 KLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREI 684 (1089)
Q Consensus 605 ~vavd~~~g~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~~ 684 (1089)
.|.+.|..--|.+++. ++++..+..||++-..+.+-.-..+ --+-.++.|+|....++.+....++.+
T Consensus 218 sv~FHp~~plllvaG~-d~~lrifqvDGk~N~~lqS~~l~~f-----------Pi~~a~f~p~G~~~i~~s~rrky~ysy 285 (514)
T KOG2055|consen 218 SVQFHPTAPLLLVAGL-DGTLRIFQVDGKVNPKLQSIHLEKF-----------PIQKAEFAPNGHSVIFTSGRRKYLYSY 285 (514)
T ss_pred EEEecCCCceEEEecC-CCcEEEEEecCccChhheeeeeccC-----------ccceeeecCCCceEEEecccceEEEEe
Confidence 4566764444555555 4666667667765433222111100 125566777887445555556677889
Q ss_pred ECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeE-EEEeCCCccccCC
Q 001380 685 DFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVT-RAFSGDGYERNLN 763 (1089)
Q Consensus 685 d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~-~~~~g~g~~~~~~ 763 (1089)
|+.+.+++.+...+... -.+-.-..++++++.|.++ ..++.|..+...++.. ..+--.|
T Consensus 286 Dle~ak~~k~~~~~g~e-------------~~~~e~FeVShd~~fia~~-G~~G~I~lLhakT~eli~s~KieG------ 345 (514)
T KOG2055|consen 286 DLETAKVTKLKPPYGVE-------------EKSMERFEVSHDSNFIAIA-GNNGHIHLLHAKTKELITSFKIEG------ 345 (514)
T ss_pred eccccccccccCCCCcc-------------cchhheeEecCCCCeEEEc-ccCceEEeehhhhhhhhheeeecc------
Confidence 99888888775432111 0133456677887633333 2355666655544432 2222111
Q ss_pred CCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCC
Q 001380 764 GSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTG 805 (1089)
Q Consensus 764 g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~ 805 (1089)
.-++++++.+++.||++ .+.+.|+++++...
T Consensus 346 ----------~v~~~~fsSdsk~l~~~-~~~GeV~v~nl~~~ 376 (514)
T KOG2055|consen 346 ----------VVSDFTFSSDSKELLAS-GGTGEVYVWNLRQN 376 (514)
T ss_pred ----------EEeeEEEecCCcEEEEE-cCCceEEEEecCCc
Confidence 24578888888555555 45568888887644
No 440
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=97.03 E-value=0.0019 Score=60.58 Aligned_cols=76 Identities=22% Similarity=0.243 Sum_probs=50.5
Q ss_pred cCCCEEEEEEecC-------CCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecC
Q 001380 451 LKGKVVVLDFWTY-------CCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDG 523 (1089)
Q Consensus 451 ~~gk~vll~Fwa~-------wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~ 523 (1089)
-.|++++|.|.++ |||.|....|.+++..++.++ +..+|-|.+ .+...|+ |+
T Consensus 17 ~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~-~~~lv~v~V------G~r~~Wk--------------dp 75 (119)
T PF06110_consen 17 NSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE-NARLVYVEV------GDRPEWK--------------DP 75 (119)
T ss_dssp TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST-TEEEEEEE---------HHHHC---------------T
T ss_pred cCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC-CceEEEEEc------CCHHHhC--------------CC
Confidence 3568888888854 999999999999998887554 577777755 2445555 55
Q ss_pred ChhHHH--HhCCCceeEEEEECCCCc
Q 001380 524 DMNLWR--ELGVNSWPTFAVVGPNGK 547 (1089)
Q Consensus 524 ~~~l~~--~~~v~~~Pt~~lid~~G~ 547 (1089)
++..-+ .+++.++||++-++..++
T Consensus 76 ~n~fR~~p~~~l~~IPTLi~~~~~~r 101 (119)
T PF06110_consen 76 NNPFRTDPDLKLKGIPTLIRWETGER 101 (119)
T ss_dssp TSHHHH--CC---SSSEEEECTSS-E
T ss_pred CCCceEcceeeeeecceEEEECCCCc
Confidence 555555 599999999999976644
No 441
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=96.98 E-value=0.0004 Score=79.81 Aligned_cols=95 Identities=21% Similarity=0.418 Sum_probs=67.7
Q ss_pred CEEEEEEecCCCcchhhhhhhHHHHHHHcCC-CC-EEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 454 KVVVLDFWTYCCINCMHVLPDLEFLEKKYKD-MP-FTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 454 k~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~-~~-v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
|..||.||++||++|+...|.++++++...+ .+ +.|.+|.++ .+.+..+++.|
T Consensus 58 ~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA-------------------------~~~N~~lCRef 112 (606)
T KOG1731|consen 58 KAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCA-------------------------DEENVKLCREF 112 (606)
T ss_pred hhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeecc-------------------------chhhhhhHhhc
Confidence 5688999999999999999999999988765 23 555566553 13467899999
Q ss_pred CCCceeEEEEECCCCcEE---EEecCCCchhhHHHHHHHHHHHhc
Q 001380 532 GVNSWPTFAVVGPNGKLL---AQLAGEGHRKDLDDLVEAALLFYG 573 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~---~~~~G~~~~~~l~~~l~~~l~~~~ 573 (1089)
+|.++|+...+.++-+-. ....|.....++.+.+.+.+.+..
T Consensus 113 ~V~~~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la~~~ 157 (606)
T KOG1731|consen 113 SVSGYPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLAEED 157 (606)
T ss_pred CCCCCceeeecCCccccCcCCCcccCCcchhhHHHHHHHHHHHHH
Confidence 999999999997772211 112344445566666666555543
No 442
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.96 E-value=1.6 Score=53.10 Aligned_cols=179 Identities=16% Similarity=0.129 Sum_probs=97.1
Q ss_pred CCeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEEEEECCCCe
Q 001380 612 NNRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNDT 690 (1089)
Q Consensus 612 ~g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~ 690 (1089)
++.||+++.. +.|+-+|.. |+.+.++......... .....-....|+++. ++.||+++. +..|..+|..+|+
T Consensus 69 ~g~vyv~s~~-g~v~AlDa~TGk~lW~~~~~~~~~~~---~~~~~~~~~rg~av~--~~~v~v~t~-dg~l~ALDa~TGk 141 (527)
T TIGR03075 69 DGVMYVTTSY-SRVYALDAKTGKELWKYDPKLPDDVI---PVMCCDVVNRGVALY--DGKVFFGTL-DARLVALDAKTGK 141 (527)
T ss_pred CCEEEEECCC-CcEEEEECCCCceeeEecCCCCcccc---cccccccccccceEE--CCEEEEEcC-CCEEEEEECCCCC
Confidence 7899998874 578888875 8888765442111000 000000123566775 345888764 5689999998887
Q ss_pred EEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECC-----CcEEEEEECCCCeEEEEeCCCccc-----
Q 001380 691 VRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAG-----QHQIWEHSTVDGVTRAFSGDGYER----- 760 (1089)
Q Consensus 691 v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~-----~~~I~~~~~~~g~~~~~~g~g~~~----- 760 (1089)
+.--...+..... ....+.| +.. ++.||+...+ .+.|+.+|.++|+...-.......
T Consensus 142 ~~W~~~~~~~~~~--------~~~tssP--~v~---~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~ 208 (527)
T TIGR03075 142 VVWSKKNGDYKAG--------YTITAAP--LVV---KGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLD 208 (527)
T ss_pred EEeeccccccccc--------ccccCCc--EEE---CCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCccccc
Confidence 7654332211000 0001122 222 3588887543 468999999988765322111100
Q ss_pred ----cCCCCCCCCcc--------ccCC-ceEEEcCCCCEEEEEeCC---------------CCeEEEEEcCCCCeEEE
Q 001380 761 ----NLNGSSSLNTS--------FAQP-SGISLSPDFMEIYVADSE---------------SSSIRALNLKTGGSRLL 810 (1089)
Q Consensus 761 ----~~~g~~~~~~~--------~~~P-~glav~~~g~~lyvad~~---------------~~~I~~~~~~~~~~~~~ 810 (1089)
...+......+ -... ..+++|++.+.||+.-.+ +++|..++.++|..+-.
T Consensus 209 ~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~ 286 (527)
T TIGR03075 209 KADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWH 286 (527)
T ss_pred ccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEe
Confidence 00011100000 0011 145889887799987633 34888999998887643
No 443
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=96.94 E-value=0.0027 Score=55.07 Aligned_cols=71 Identities=21% Similarity=0.472 Sum_probs=47.8
Q ss_pred EecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHhCCCceeEE
Q 001380 460 FWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRELGVNSWPTF 539 (1089)
Q Consensus 460 Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~~v~~~Pt~ 539 (1089)
+++++|++|......++++.+++. ..+.++-+ ....++ ..|||..+|++
T Consensus 5 v~~~~C~~C~~~~~~~~~~~~~~~-i~~ei~~~-----------------------------~~~~~~-~~ygv~~vPal 53 (76)
T PF13192_consen 5 VFSPGCPYCPELVQLLKEAAEELG-IEVEIIDI-----------------------------EDFEEI-EKYGVMSVPAL 53 (76)
T ss_dssp EECSSCTTHHHHHHHHHHHHHHTT-EEEEEEET-----------------------------TTHHHH-HHTT-SSSSEE
T ss_pred EeCCCCCCcHHHHHHHHHHHHhcC-CeEEEEEc-----------------------------cCHHHH-HHcCCCCCCEE
Confidence 368889999999999999988874 33444433 122344 89999999999
Q ss_pred EEECCCCcEEEEecC-CCchhhHHHHHH
Q 001380 540 AVVGPNGKLLAQLAG-EGHRKDLDDLVE 566 (1089)
Q Consensus 540 ~lid~~G~i~~~~~G-~~~~~~l~~~l~ 566 (1089)
+| ||+++ +.| ..+.+++.++|+
T Consensus 54 -vI--ng~~~--~~G~~p~~~el~~~l~ 76 (76)
T PF13192_consen 54 -VI--NGKVV--FVGRVPSKEELKELLE 76 (76)
T ss_dssp -EE--TTEEE--EESS--HHHHHHHHHH
T ss_pred -EE--CCEEE--EEecCCCHHHHHHHhC
Confidence 55 47765 556 567777777663
No 444
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=96.94 E-value=0.019 Score=62.27 Aligned_cols=157 Identities=14% Similarity=0.205 Sum_probs=105.1
Q ss_pred ceeEEEecCCCEEEEEECCCcEEEEEECCCCeEE-EEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCe
Q 001380 718 PWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTR-AFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSS 796 (1089)
Q Consensus 718 P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~-~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~ 796 (1089)
-..+.++|....|..+.+..+.|..||...+... .+. .-..+++|+++|++ ..|++-.+.+.
T Consensus 190 i~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi----------------~~mRTN~IswnPea-fnF~~a~ED~n 252 (433)
T KOG0268|consen 190 ISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVI----------------LTMRTNTICWNPEA-FNFVAANEDHN 252 (433)
T ss_pred eeEEecCCCcchheeeeccCCceEEEecccCCccceee----------------eeccccceecCccc-cceeecccccc
Confidence 3556677776667777777888999997765432 111 01257899999976 99999999999
Q ss_pred EEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccCCcEEEEeCCCCEEEEEeCCCCeEEEEecc
Q 001380 797 IRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGI 876 (1089)
Q Consensus 797 I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~v~t~~g~ 876 (1089)
++.+|...- .+.+ +.+ .++ .+.-..|+++|.|.=+|+.+|...|+.|....+.-.-+--+
T Consensus 253 lY~~DmR~l-~~p~---------~v~-~dh---------vsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYht 312 (433)
T KOG0268|consen 253 LYTYDMRNL-SRPL---------NVH-KDH---------VSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT 312 (433)
T ss_pred ceehhhhhh-cccc---------hhh-ccc---------ceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhH
Confidence 999987621 1100 000 010 12346788999999999999999999997654432222211
Q ss_pred CCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEEEEeCCCC
Q 001380 877 GKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLDLNKE 923 (1089)
Q Consensus 877 g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~~~~~~ 923 (1089)
-.++.-.++...-|....++.++...|+.+.-+..
T Consensus 313 ------------kRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~As 347 (433)
T KOG0268|consen 313 ------------KRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKAS 347 (433)
T ss_pred ------------hhhheeeEEEEeccccEEEecCCCcceeeeecchh
Confidence 14566777777777777788777777877765554
No 445
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.94 E-value=0.1 Score=62.98 Aligned_cols=263 Identities=18% Similarity=0.272 Sum_probs=159.9
Q ss_pred CCCceEEEeecCCeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCC
Q 001380 601 KFPGKLAIDILNNRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENH 679 (1089)
Q Consensus 601 ~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~ 679 (1089)
...-|+++.| ..-..++.-.++.|..||-. |..+..+... || -..||+|+|++- |||+....-
T Consensus 10 sRvKglsFHP-~rPwILtslHsG~IQlWDYRM~tli~rFdeH------dG--------pVRgv~FH~~qp-lFVSGGDDy 73 (1202)
T KOG0292|consen 10 SRVKGLSFHP-KRPWILTSLHSGVIQLWDYRMGTLIDRFDEH------DG--------PVRGVDFHPTQP-LFVSGGDDY 73 (1202)
T ss_pred ccccceecCC-CCCEEEEeecCceeeeehhhhhhHHhhhhcc------CC--------ccceeeecCCCC-eEEecCCcc
Confidence 4456788887 44455555567899999876 6666665443 22 348999999998 999998889
Q ss_pred EEEEEECCCCe-EEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECC-CcEEEEEECCCCeEEEE-eCC
Q 001380 680 ALREIDFVNDT-VRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAG-QHQIWEHSTVDGVTRAF-SGD 756 (1089)
Q Consensus 680 ~I~~~d~~~g~-v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~-~~~I~~~~~~~g~~~~~-~g~ 756 (1089)
.|.+++.+... +-++-| ++.+-+-+.|++. +=||..+. ...|+.|+-.++.+... .|.
T Consensus 74 kIkVWnYk~rrclftL~G-----------------HlDYVRt~~FHhe--yPWIlSASDDQTIrIWNwqsr~~iavltGH 134 (1202)
T KOG0292|consen 74 KIKVWNYKTRRCLFTLLG-----------------HLDYVRTVFFHHE--YPWILSASDDQTIRIWNWQSRKCIAVLTGH 134 (1202)
T ss_pred EEEEEecccceehhhhcc-----------------ccceeEEeeccCC--CceEEEccCCCeEEEEeccCCceEEEEecC
Confidence 99999987644 333332 2345566667653 44544444 34577777777765544 332
Q ss_pred CccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecC---CCCCCC--CccccCCCCCcc
Q 001380 757 GYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGG---DPIFPD--NLFKFGDRDGMG 831 (1089)
Q Consensus 757 g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~---~~~~~~--~l~~~g~~dg~~ 831 (1089)
.. .-..-.++|.. .+.|+-+-..+||++|..+-..+..+.+ +.+.+. +---||..|..-
T Consensus 135 nH---------------YVMcAqFhptE-DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVV 198 (1202)
T KOG0292|consen 135 NH---------------YVMCAQFHPTE-DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVV 198 (1202)
T ss_pred ce---------------EEEeeccCCcc-ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeee
Confidence 21 12233466755 7888888899999999875444444332 000000 001233333222
Q ss_pred ccccccCceEE---EEccCCcEEEEeCCCCEEE--EEeCCCC--eEEEEeccCCCCCCCCcccccccCCCceEEEccCCc
Q 001380 832 SEVLLQHPLGV---YCAKNGQIYVADSYNHKIK--KLDPASN--RVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGN 904 (1089)
Q Consensus 832 ~~~~l~~P~gv---a~~~~G~lyVaD~~n~~I~--~~d~~~~--~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~ 904 (1089)
-...-.|-.|| ++-|.--++|+......|+ +++. ++ ++.|.-| .++.-+++.+++.-+
T Consensus 199 K~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmne-tKaWEvDtcrg--------------H~nnVssvlfhp~q~ 263 (1202)
T KOG0292|consen 199 KHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNE-TKAWEVDTCRG--------------HYNNVSSVLFHPHQD 263 (1202)
T ss_pred eeeecccccccceEEecCCcceEEecCCcceeeEEEecc-ccceeehhhhc--------------ccCCcceEEecCccc
Confidence 22222344444 3334446888776665554 4442 22 1222222 577788999999888
Q ss_pred EEEEECCCCEEEEEeCCCCCceEEEE
Q 001380 905 LFIADTNNNIIRYLDLNKEEPELQTL 930 (1089)
Q Consensus 905 lyVad~~n~~I~~~~~~~~~~~~~~l 930 (1089)
+.++......|+++++...+ .+.+.
T Consensus 264 lIlSnsEDksirVwDm~kRt-~v~tf 288 (1202)
T KOG0292|consen 264 LILSNSEDKSIRVWDMTKRT-SVQTF 288 (1202)
T ss_pred eeEecCCCccEEEEeccccc-ceeee
Confidence 99999999999999998874 34443
No 446
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=96.91 E-value=0.26 Score=55.53 Aligned_cols=200 Identities=15% Similarity=0.191 Sum_probs=103.0
Q ss_pred CCeEE-EEeC-CCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEEEEECCCC
Q 001380 612 NNRLF-ISDS-NHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVND 689 (1089)
Q Consensus 612 ~g~L~-vsd~-~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g 689 (1089)
++++| ++|. +-+.|+.+|.+|+-++.=... .| ..|.. .+.+|++|.+.. .+-|+.+|+++.
T Consensus 235 ~~RvYFlsD~eG~GnlYSvdldGkDlrrHTnF-----td--------YY~R~--~nsDGkrIvFq~--~GdIylydP~td 297 (668)
T COG4946 235 GERVYFLSDHEGVGNLYSVDLDGKDLRRHTNF-----TD--------YYPRN--ANSDGKRIVFQN--AGDIYLYDPETD 297 (668)
T ss_pred cceEEEEecccCccceEEeccCCchhhhcCCc-----hh--------ccccc--cCCCCcEEEEec--CCcEEEeCCCcC
Confidence 45666 6765 457899999999877642111 10 12222 122444444433 334555555555
Q ss_pred eEEEEecCCCCCCCCCCCCcccccccCCc----eeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCccccCCCC
Q 001380 690 TVRTLAGNGTKGSDYQGGEKGTSQLLNSP----WDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGS 765 (1089)
Q Consensus 690 ~v~~~ag~g~~~~~~~~~~~~~~~~l~~P----~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~~~~g~ 765 (1089)
.++.+-- |-.-. .......+..| .+.++.+ |+.+-.. ..++.+.+++..+.+..+...+...
T Consensus 298 ~lekldI-~lpl~-----rk~k~~k~~~pskyledfa~~~-Gd~ia~V--SRGkaFi~~~~~~~~iqv~~~~~Vr----- 363 (668)
T COG4946 298 SLEKLDI-GLPLD-----RKKKQPKFVNPSKYLEDFAVVN-GDYIALV--SRGKAFIMRPWDGYSIQVGKKGGVR----- 363 (668)
T ss_pred cceeeec-CCccc-----cccccccccCHHHhhhhhccCC-CcEEEEE--ecCcEEEECCCCCeeEEcCCCCceE-----
Confidence 5444421 10000 00011112222 2333332 3233222 3466777777766655554222110
Q ss_pred CCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEc
Q 001380 766 SSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCA 845 (1089)
Q Consensus 766 ~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~ 845 (1089)
-.-+..++ +.+.+.+.....+-+++..++.++.+.++ |..-..|.++
T Consensus 364 ---------Y~r~~~~~--e~~vigt~dgD~l~iyd~~~~e~kr~e~~----------------------lg~I~av~vs 410 (668)
T COG4946 364 ---------YRRIQVDP--EGDVIGTNDGDKLGIYDKDGGEVKRIEKD----------------------LGNIEAVKVS 410 (668)
T ss_pred ---------EEEEccCC--cceEEeccCCceEEEEecCCceEEEeeCC----------------------ccceEEEEEc
Confidence 11122222 24555565666777777777776665442 3455678888
Q ss_pred cCCcEEEEeCCCCEEEEEeCCCCeEEEEec
Q 001380 846 KNGQIYVADSYNHKIKKLDPASNRVSTLAG 875 (1089)
Q Consensus 846 ~~G~lyVaD~~n~~I~~~d~~~~~v~t~~g 875 (1089)
++|+-.|+...+..|.++|.+++.++.+..
T Consensus 411 ~dGK~~vvaNdr~el~vididngnv~~idk 440 (668)
T COG4946 411 PDGKKVVVANDRFELWVIDIDNGNVRLIDK 440 (668)
T ss_pred CCCcEEEEEcCceEEEEEEecCCCeeEecc
Confidence 898755555567888899988888877753
No 447
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=96.91 E-value=0.0039 Score=76.41 Aligned_cols=106 Identities=16% Similarity=0.213 Sum_probs=76.2
Q ss_pred CCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCcEE
Q 001380 164 GIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECI 243 (1089)
Q Consensus 164 ~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~v 243 (1089)
.++.||+++.+++|+++|+++.++|+.+...+..+.+++|++ ++ +.. .. |+--...++++.-.-+.+.
T Consensus 445 D~~Rp~a~eaI~~l~~~Gi~v~miTGD~~~ta~~iA~~lGI~-~v----~a~-----~~--PedK~~~v~~lq~~g~~Va 512 (675)
T TIGR01497 445 DIVKGGIKERFAQLRKMGIKTIMITGDNRLTAAAIAAEAGVD-DF----IAE-----AT--PEDKIALIRQEQAEGKLVA 512 (675)
T ss_pred ccchhHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCC-EE----EcC-----CC--HHHHHHHHHHHHHcCCeEE
Confidence 367899999999999999999999999999999999999996 32 221 22 3333344444433445799
Q ss_pred EEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecC
Q 001380 244 VIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKE 285 (1089)
Q Consensus 244 ~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~d 285 (1089)
|+||+.||..+.+.++ +++..+...+..+ ..+|++.-|
T Consensus 513 mvGDG~NDapAL~~Ad---vGiAm~~gt~~ak-eaadivLld 550 (675)
T TIGR01497 513 MTGDGTNDAPALAQAD---VGVAMNSGTQAAK-EAANMVDLD 550 (675)
T ss_pred EECCCcchHHHHHhCC---EeEEeCCCCHHHH-HhCCEEECC
Confidence 9999999999999999 4444443222222 245666543
No 448
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=96.90 E-value=0.0049 Score=75.63 Aligned_cols=106 Identities=11% Similarity=0.161 Sum_probs=80.7
Q ss_pred CCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCcE
Q 001380 163 SGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSEC 242 (1089)
Q Consensus 163 ~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~ 242 (1089)
..++.|++++.+++||+.|+++.++|+.+......+.+++|++ ++ +. .-.|+--.++.+.++-.-+-+
T Consensus 439 ~Dp~R~~a~e~I~~Lr~~GI~vvMiTGDn~~TA~aIA~elGI~-~v----~A-------~~~PedK~~iV~~lQ~~G~~V 506 (673)
T PRK14010 439 KDVIKDGLVERFRELREMGIETVMCTGDNELTAATIAKEAGVD-RF----VA-------ECKPEDKINVIREEQAKGHIV 506 (673)
T ss_pred ecCCcHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCc-eE----Ec-------CCCHHHHHHHHHHHHhCCCEE
Confidence 3467899999999999999999999999999999999999996 32 21 223455556666665555679
Q ss_pred EEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEec
Q 001380 243 IVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRK 284 (1089)
Q Consensus 243 v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~ 284 (1089)
.|+||+.||.-+.++|. ++|..|.. .+.....+|.|.-
T Consensus 507 aMtGDGvNDAPALa~AD---VGIAMgsG-TdvAkeAADiVLl 544 (673)
T PRK14010 507 AMTGDGTNDAPALAEAN---VGLAMNSG-TMSAKEAANLIDL 544 (673)
T ss_pred EEECCChhhHHHHHhCC---EEEEeCCC-CHHHHHhCCEEEc
Confidence 99999999999999998 56666632 2333335777764
No 449
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=96.90 E-value=0.0036 Score=53.54 Aligned_cols=72 Identities=25% Similarity=0.338 Sum_probs=44.8
Q ss_pred EEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHhCCCce
Q 001380 457 VLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRELGVNSW 536 (1089)
Q Consensus 457 ll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~~v~~~ 536 (1089)
+..|+++||++|+...+.|.+ .++.+.-+.+ +++.+.. .++.+.+++.++
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-------~~i~~~~vdi-----~~~~~~~------------------~~~~~~~~~~~v 51 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-------KGIAFEEIDV-----EKDSAAR------------------EEVLKVLGQRGV 51 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-------CCCeEEEEec-----cCCHHHH------------------HHHHHHhCCCcc
Confidence 457899999999998887754 2455555533 1111111 235667899999
Q ss_pred eEEEEECCCCcEEEEecCCCchhhHHHHH
Q 001380 537 PTFAVVGPNGKLLAQLAGEGHRKDLDDLV 565 (1089)
Q Consensus 537 Pt~~lid~~G~i~~~~~G~~~~~~l~~~l 565 (1089)
|++++ + |++ ..| .+.+.+.++|
T Consensus 52 P~~~~-~--~~~---~~g-~~~~~i~~~i 73 (74)
T TIGR02196 52 PVIVI-G--HKI---IVG-FDPEKLDQLL 73 (74)
T ss_pred cEEEE-C--CEE---Eee-CCHHHHHHHh
Confidence 98876 3 554 444 3556666554
No 450
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=96.89 E-value=0.012 Score=70.47 Aligned_cols=122 Identities=18% Similarity=0.348 Sum_probs=77.3
Q ss_pred CCCCCCCceEEEeecCCeEEEEeCCCC-------------------EEEEEeCCCC-------EEEEEecCCCCC----C
Q 001380 597 TSPLKFPGKLAIDILNNRLFISDSNHN-------------------RIVVTDLDGN-------FIVQIGSSGEEG----L 646 (1089)
Q Consensus 597 ~~~l~~P~~vavd~~~g~L~vsd~~~~-------------------~I~~~~~~g~-------~~~~i~~~g~~g----~ 646 (1089)
++.+..|.++++++.++.+|++-+++. +|+++++++. ....+-..+... .
T Consensus 346 AT~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~ 425 (524)
T PF05787_consen 346 ATPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGN 425 (524)
T ss_pred cccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCccccccc
Confidence 578999999999999999999977655 7999987754 222211111111 1
Q ss_pred CCCCCCccccCCcceeEEeeCCCEEEEE-ECCCCE--EEEEE--------------------CCCCeEEEEecCCCCCCC
Q 001380 647 RDGSFDDATFNRPQGLAYNAKKNLLYVA-DTENHA--LREID--------------------FVNDTVRTLAGNGTKGSD 703 (1089)
Q Consensus 647 ~dG~~~~~~f~~P~gla~d~~g~~lyVa-D~~n~~--I~~~d--------------------~~~g~v~~~ag~g~~~~~ 703 (1089)
..+......|.+|.+|+++++|+ |||+ |..++. |.... +..+.++.+.. +..
T Consensus 426 ~~~~~~~~~f~sPDNL~~d~~G~-LwI~eD~~~~~~~l~g~t~~G~~~~~~~~~G~~~~~~~~~~g~~~rf~~-~P~--- 500 (524)
T PF05787_consen 426 GSNKCDDNGFASPDNLAFDPDGN-LWIQEDGGGSNNNLPGVTPDGEVYDFARNDGNNVWAYDPDTGELKRFLV-GPN--- 500 (524)
T ss_pred ccCcccCCCcCCCCceEECCCCC-EEEEeCCCCCCcccccccccCceeeeeecccceeeeccccccceeeecc-CCC---
Confidence 12234456799999999999999 6665 665543 22221 22233333331 111
Q ss_pred CCCCCcccccccCCceeEEEecCCCEEEEEE
Q 001380 704 YQGGEKGTSQLLNSPWDVCYKPINEKVYIAM 734 (1089)
Q Consensus 704 ~~~~~~~~~~~l~~P~~la~~~~g~~lyvad 734 (1089)
=....|++++|+++.|||.-
T Consensus 501 -----------gaE~tG~~fspDg~tlFvni 520 (524)
T PF05787_consen 501 -----------GAEITGPCFSPDGRTLFVNI 520 (524)
T ss_pred -----------CcccccceECCCCCEEEEEE
Confidence 12467899999999999864
No 451
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=96.88 E-value=0.76 Score=55.08 Aligned_cols=260 Identities=17% Similarity=0.189 Sum_probs=131.8
Q ss_pred CCeEEEEeC----CCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEEEEECC
Q 001380 612 NNRLFISDS----NHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREIDFV 687 (1089)
Q Consensus 612 ~g~L~vsd~----~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~~d~~ 687 (1089)
.+.||+... ..+..+.+|.+|.+...+...... -..+-..++|+ +++... +.++++|+.
T Consensus 113 ~~gl~~~~~~~~~~~~~~~~iD~~G~Vrw~~~~~~~~--------------~~~~~~l~nG~-ll~~~~--~~~~e~D~~ 175 (477)
T PF05935_consen 113 EDGLYFVNGNDWDSSSYTYLIDNNGDVRWYLPLDSGS--------------DNSFKQLPNGN-LLIGSG--NRLYEIDLL 175 (477)
T ss_dssp TT-EEEEEETT--BEEEEEEEETTS-EEEEE-GGGT----------------SSEEE-TTS--EEEEEB--TEEEEE-TT
T ss_pred CCcEEEEeCCCCCCCceEEEECCCccEEEEEccCccc--------------cceeeEcCCCC-EEEecC--CceEEEcCC
Confidence 344554444 456788999999998776554211 01166778888 444442 899999998
Q ss_pred CCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEEC-------C-----CcEEEEEECCCCeEEEEeC
Q 001380 688 NDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMA-------G-----QHQIWEHSTVDGVTRAFSG 755 (1089)
Q Consensus 688 ~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~-------~-----~~~I~~~~~~~g~~~~~~g 755 (1089)
+..+....-.+.. ...-+++...|+|+.|+.+.. . ...|..+|..+..+..+.-
T Consensus 176 G~v~~~~~l~~~~--------------~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd~tG~vv~~wd~ 241 (477)
T PF05935_consen 176 GKVIWEYDLPGGY--------------YDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVDPTGEVVWEWDF 241 (477)
T ss_dssp --EEEEEE--TTE--------------E-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE-TTS-EEEEEEG
T ss_pred CCEEEeeecCCcc--------------cccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEECCCCCEEEEEeh
Confidence 7765554321110 113578889999987777762 1 3468899944444445543
Q ss_pred CCcc-ccCC--------CCC---CCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCC---
Q 001380 756 DGYE-RNLN--------GSS---SLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDN--- 820 (1089)
Q Consensus 756 ~g~~-~~~~--------g~~---~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~--- 820 (1089)
.... ..+. +.. ....-..+-++|..++.++.|+++-...+.|.+++..++.+..+.|....+...
T Consensus 242 ~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~~w~~~~~~ 321 (477)
T PF05935_consen 242 FDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPGGWNGTYQD 321 (477)
T ss_dssp GGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-STT--TTTGG
T ss_pred HHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCCCCCcccch
Confidence 2211 1111 000 011223456799999966699999999999999998888888777753333322
Q ss_pred -ccccCCCCC------ccccccccCceEEEEccCC---cEEEEeCCCC----------------EE--EEEeCCCCeEEE
Q 001380 821 -LFKFGDRDG------MGSEVLLQHPLGVYCAKNG---QIYVADSYNH----------------KI--KKLDPASNRVST 872 (1089)
Q Consensus 821 -l~~~g~~dg------~~~~~~l~~P~gva~~~~G---~lyVaD~~n~----------------~I--~~~d~~~~~v~t 872 (1089)
++..-+.+| ......+...+.+.+-++| +|+|=|.+++ |+ +++|.+.++++.
T Consensus 322 ~ll~~vd~~G~~~~~~~~~~~~~~gQH~~~~~~~g~~~~l~vFDNg~~r~~~~~~~~~~~~~~Sr~v~Y~Ide~~~T~~~ 401 (477)
T PF05935_consen 322 YLLTPVDSNGNPIDCGDGDFDWFWGQHTAHLIPDGPQGNLLVFDNGNGRGYGQPAYVSPKDNYSRAVEYRIDENKMTVEQ 401 (477)
T ss_dssp GB-EEB-TTS-B-EBSSSS----SS-EEEEE-TTS---SEEEEE--TTGGGS--SSCCG-----EEEEEEEETTTTEEEE
T ss_pred heeeeeccCCceeeccCCCCcccccccceEEcCCCCeEEEEEEECCCCCCCCCccccccccccceEEEEEecCCCceEEE
Confidence 222211111 1122233456788888899 9999886532 34 457888888888
Q ss_pred EeccCCCCCCCCcccccccCCCc--eEEEccC-CcEEEEE
Q 001380 873 LAGIGKAGFKDGAALAAQLSEPA--GIIEAQN-GNLFIAD 909 (1089)
Q Consensus 873 ~~g~g~~g~~~g~~~~~~l~~P~--gi~vd~~-G~lyVad 909 (1089)
+...+... | ..+.+|. ++..-++ |+++|..
T Consensus 402 vw~y~~~~---g----~~~yS~~~s~aq~l~n~gn~li~~ 434 (477)
T PF05935_consen 402 VWEYGKPR---G----NEFYSPIVSSAQYLPNKGNTLITS 434 (477)
T ss_dssp EEEESGGG---G----GGG--SS--EEEEETTTTEEEEEE
T ss_pred EEEeCCCC---C----CCccCCcceeeEEecCCCCEEEEe
Confidence 87654431 1 1233332 3344456 7766654
No 452
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=96.87 E-value=0.17 Score=57.29 Aligned_cols=227 Identities=13% Similarity=0.209 Sum_probs=139.3
Q ss_pred eEEEeecCCeEEEEeCCCCEEEEEeCCCCE-EEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEEE
Q 001380 605 KLAIDILNNRLFISDSNHNRIVVTDLDGNF-IVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALRE 683 (1089)
Q Consensus 605 ~vavd~~~g~L~vsd~~~~~I~~~~~~g~~-~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~ 683 (1089)
++.+-. +|+|+.+.-..|-|.++|...+. ++.+... . .--+-+-+.++++.+++.......++.
T Consensus 73 s~~fR~-DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah-~-------------apv~~~~f~~~d~t~l~s~sDd~v~k~ 137 (487)
T KOG0310|consen 73 SVDFRS-DGRLLAAGDESGHVKVFDMKSRVILRQLYAH-Q-------------APVHVTKFSPQDNTMLVSGSDDKVVKY 137 (487)
T ss_pred EEEeec-CCeEEEccCCcCcEEEeccccHHHHHHHhhc-c-------------CceeEEEecccCCeEEEecCCCceEEE
Confidence 456654 78888887777889999854432 2233222 1 122556667788888888777778888
Q ss_pred EECCCCeEE-EEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCe--EEEEeCCCccc
Q 001380 684 IDFVNDTVR-TLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGV--TRAFSGDGYER 760 (1089)
Q Consensus 684 ~d~~~g~v~-~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~--~~~~~g~g~~~ 760 (1089)
+|.++..+. .+.+.- .+-...++.|.++.++++....|.|+-||..... +..+.
T Consensus 138 ~d~s~a~v~~~l~~ht-----------------DYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln------ 194 (487)
T KOG0310|consen 138 WDLSTAYVQAELSGHT-----------------DYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN------ 194 (487)
T ss_pred EEcCCcEEEEEecCCc-----------------ceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec------
Confidence 899888874 222211 2556778888888999999999999999976543 22222
Q ss_pred cCCCCCCCCccccCC-ceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCc
Q 001380 761 NLNGSSSLNTSFAQP-SGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHP 839 (1089)
Q Consensus 761 ~~~g~~~~~~~~~~P-~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P 839 (1089)
-.+| ..+..-|.| .++++ .+.+.|+++|+.+|...+. .++.. -..-
T Consensus 195 -----------hg~pVe~vl~lpsg-s~ias-AgGn~vkVWDl~~G~qll~------------~~~~H--------~KtV 241 (487)
T KOG0310|consen 195 -----------HGCPVESVLALPSG-SLIAS-AGGNSVKVWDLTTGGQLLT------------SMFNH--------NKTV 241 (487)
T ss_pred -----------CCCceeeEEEcCCC-CEEEE-cCCCeEEEEEecCCceehh------------hhhcc--------cceE
Confidence 0122 133333444 45444 3557899999886554322 11100 1123
Q ss_pred eEEEEccCCcEEEEeCCCCEEEEEeCCCCe-EEEEeccCCCCCCCCcccccccCC-CceEEEccCCcEEEEECCCCEEEE
Q 001380 840 LGVYCAKNGQIYVADSYNHKIKKLDPASNR-VSTLAGIGKAGFKDGAALAAQLSE-PAGIIEAQNGNLFIADTNNNIIRY 917 (1089)
Q Consensus 840 ~gva~~~~G~lyVaD~~n~~I~~~d~~~~~-v~t~~g~g~~g~~~g~~~~~~l~~-P~gi~vd~~G~lyVad~~n~~I~~ 917 (1089)
.++.+..++.-.++-+-.+.+++||..+-. +..+. +.. -..|++.+++.-.|+...|+.+..
T Consensus 242 TcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~----------------~~~pvLsiavs~dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 242 TCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK----------------YPGPVLSIAVSPDDQTVVIGMSNGLVSI 305 (487)
T ss_pred EEEEeecCCceEeecccccceEEEEccceEEEEeee----------------cccceeeEEecCCCceEEEecccceeee
Confidence 556666778877887888999999943322 22221 111 235778877777777777776654
Q ss_pred E
Q 001380 918 L 918 (1089)
Q Consensus 918 ~ 918 (1089)
-
T Consensus 306 r 306 (487)
T KOG0310|consen 306 R 306 (487)
T ss_pred e
Confidence 3
No 453
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.87 E-value=0.46 Score=55.67 Aligned_cols=233 Identities=15% Similarity=0.129 Sum_probs=124.3
Q ss_pred CCeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEEEEECCCCe
Q 001380 612 NNRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNDT 690 (1089)
Q Consensus 612 ~g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~ 690 (1089)
++.+||.. ++++|+.+|.+ |+.+......... . .......| ++. ++ .+|+.. .++.+..+|.++|.
T Consensus 160 ~~~v~v~~-~~g~l~ald~~tG~~~W~~~~~~~~-~-----~~~~~~sP---~v~-~~-~v~~~~-~~g~v~a~d~~~G~ 226 (394)
T PRK11138 160 DGLVLVHT-SNGMLQALNESDGAVKWTVNLDVPS-L-----TLRGESAP---ATA-FG-GAIVGG-DNGRVSAVLMEQGQ 226 (394)
T ss_pred CCEEEEEC-CCCEEEEEEccCCCEeeeecCCCCc-c-----cccCCCCC---EEE-CC-EEEEEc-CCCEEEEEEccCCh
Confidence 67788765 46789999984 8888766443110 0 00001233 232 23 377764 46788899988876
Q ss_pred EEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCccccCCCCCCCCc
Q 001380 691 VRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNT 770 (1089)
Q Consensus 691 v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~ 770 (1089)
+.--...+....... .........+|. +. ++.+|++.. .+.++.+|..+|....-...
T Consensus 227 ~~W~~~~~~~~~~~~--~~~~~~~~~sP~---v~--~~~vy~~~~-~g~l~ald~~tG~~~W~~~~-------------- 284 (394)
T PRK11138 227 LIWQQRISQPTGATE--IDRLVDVDTTPV---VV--GGVVYALAY-NGNLVALDLRSGQIVWKREY-------------- 284 (394)
T ss_pred hhheeccccCCCccc--hhcccccCCCcE---EE--CCEEEEEEc-CCeEEEEECCCCCEEEeecC--------------
Confidence 543221111000000 000000012332 22 458998774 57899999998875432211
Q ss_pred cccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccCCcE
Q 001380 771 SFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQI 850 (1089)
Q Consensus 771 ~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~l 850 (1089)
..+..++++ +++||+.+. ++.++.++.++|....-.. ...+ .....|. + .+|.|
T Consensus 285 --~~~~~~~~~--~~~vy~~~~-~g~l~ald~~tG~~~W~~~-------------~~~~----~~~~sp~---v-~~g~l 338 (394)
T PRK11138 285 --GSVNDFAVD--GGRIYLVDQ-NDRVYALDTRGGVELWSQS-------------DLLH----RLLTAPV---L-YNGYL 338 (394)
T ss_pred --CCccCcEEE--CCEEEEEcC-CCeEEEEECCCCcEEEccc-------------ccCC----CcccCCE---E-ECCEE
Confidence 112234443 349999874 5789999998775432100 0000 0122332 2 26899
Q ss_pred EEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEEEEeC
Q 001380 851 YVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLDL 920 (1089)
Q Consensus 851 yVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~~~ 920 (1089)
|+.+. ++.|..+|+++|++..-...+..+ ....| ++. +|+|||.+. ++.|..|++
T Consensus 339 ~v~~~-~G~l~~ld~~tG~~~~~~~~~~~~---------~~s~P---~~~-~~~l~v~t~-~G~l~~~~~ 393 (394)
T PRK11138 339 VVGDS-EGYLHWINREDGRFVAQQKVDSSG---------FLSEP---VVA-DDKLLIQAR-DGTVYAITR 393 (394)
T ss_pred EEEeC-CCEEEEEECCCCCEEEEEEcCCCc---------ceeCC---EEE-CCEEEEEeC-CceEEEEeC
Confidence 99874 578999999888754332111100 12223 333 568999864 567777764
No 454
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=96.85 E-value=0.0047 Score=75.84 Aligned_cols=105 Identities=15% Similarity=0.214 Sum_probs=78.4
Q ss_pred CCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCcEE
Q 001380 164 GIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECI 243 (1089)
Q Consensus 164 ~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~v 243 (1089)
.++.||+++.+++||++|+++.++|+.+......+.+++|++ ++ +. .-.|+--.+..++++-.-+-+.
T Consensus 444 D~~R~~~~eai~~Lr~~GI~vvMiTGDn~~TA~aIA~elGId-~v----~A-------~~~PedK~~iV~~lQ~~G~~Va 511 (679)
T PRK01122 444 DIVKPGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEAGVD-DF----LA-------EATPEDKLALIRQEQAEGRLVA 511 (679)
T ss_pred ccCchhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCc-EE----Ec-------cCCHHHHHHHHHHHHHcCCeEE
Confidence 366899999999999999999999999999999999999996 32 22 1234455555666554446699
Q ss_pred EEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEec
Q 001380 244 VIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRK 284 (1089)
Q Consensus 244 ~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~ 284 (1089)
|+||+.||-.+.++|. ++|..|.. .+.....+|.|.-
T Consensus 512 MtGDGvNDAPALa~AD---VGIAMgsG-TdvAkeAADiVLl 548 (679)
T PRK01122 512 MTGDGTNDAPALAQAD---VGVAMNSG-TQAAKEAGNMVDL 548 (679)
T ss_pred EECCCcchHHHHHhCC---EeEEeCCC-CHHHHHhCCEEEe
Confidence 9999999999999998 55666532 2233334666654
No 455
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=96.84 E-value=0.68 Score=54.67 Aligned_cols=245 Identities=16% Similarity=0.161 Sum_probs=150.7
Q ss_pred eEEEeecCCeEEEEeCCCCEEEEEeCCCCEE--EEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEE
Q 001380 605 KLAIDILNNRLFISDSNHNRIVVTDLDGNFI--VQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALR 682 (1089)
Q Consensus 605 ~vavd~~~g~L~vsd~~~~~I~~~~~~g~~~--~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~ 682 (1089)
.+|++..+++|-++.+ ++.|..|++..... ..+.++ +. .+-.+|++.+.|+ ||-++ .++.|-
T Consensus 30 slA~s~kS~~lAvsRt-~g~IEiwN~~~~w~~~~vi~g~-~d------------rsIE~L~W~e~~R-LFS~g-~sg~i~ 93 (691)
T KOG2048|consen 30 SLAYSHKSNQLAVSRT-DGNIEIWNLSNNWFLEPVIHGP-ED------------RSIESLAWAEGGR-LFSSG-LSGSIT 93 (691)
T ss_pred EEEEeccCCceeeecc-CCcEEEEccCCCceeeEEEecC-CC------------CceeeEEEccCCe-EEeec-CCceEE
Confidence 5778887888888876 57888888875533 244433 21 2568999985554 77776 588999
Q ss_pred EEECCCCeEEEEec-CCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCcccc
Q 001380 683 EIDFVNDTVRTLAG-NGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERN 761 (1089)
Q Consensus 683 ~~d~~~g~v~~~ag-~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~~ 761 (1089)
.+|+.+++...-.. +| ..-|.++++|.+..+-|..- ++.+..++...+.++.-.--+
T Consensus 94 EwDl~~lk~~~~~d~~g-----------------g~IWsiai~p~~~~l~Igcd-dGvl~~~s~~p~~I~~~r~l~---- 151 (691)
T KOG2048|consen 94 EWDLHTLKQKYNIDSNG-----------------GAIWSIAINPENTILAIGCD-DGVLYDFSIGPDKITYKRSLM---- 151 (691)
T ss_pred EEecccCceeEEecCCC-----------------cceeEEEeCCccceEEeecC-CceEEEEecCCceEEEEeecc----
Confidence 99998877655432 22 25799999999877777622 235555555555554332111
Q ss_pred CCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceE
Q 001380 762 LNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLG 841 (1089)
Q Consensus 762 ~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~g 841 (1089)
-+-..--.|++++++ .=.++-+..+.|+.++...+....+..-. .|+... ..=.--++
T Consensus 152 --------rq~sRvLslsw~~~~-~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~------------~d~l~k-~~~~iVWS 209 (691)
T KOG2048|consen 152 --------RQKSRVLSLSWNPTG-TKIAGGSIDGVIRIWDVKSGQTLHIITMQ------------LDRLSK-REPTIVWS 209 (691)
T ss_pred --------cccceEEEEEecCCc-cEEEecccCceEEEEEcCCCceEEEeeec------------cccccc-CCceEEEE
Confidence 111234578888887 54567777889999998866554322110 011000 00112467
Q ss_pred EEEccCCcEEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEEEEeCC
Q 001380 842 VYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLDLN 921 (1089)
Q Consensus 842 va~~~~G~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~~~~ 921 (1089)
|.+-.++.|.-.|+ .+.|...|...+++..-- ......-..|+++.+++-+++-....+|..+.+.
T Consensus 210 v~~Lrd~tI~sgDS-~G~V~FWd~~~gTLiqS~-------------~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~ 275 (691)
T KOG2048|consen 210 VLFLRDSTIASGDS-AGTVTFWDSIFGTLIQSH-------------SCHDADVLALAVADNEDRVFSAGVDPKIIQYSLT 275 (691)
T ss_pred EEEeecCcEEEecC-CceEEEEcccCcchhhhh-------------hhhhcceeEEEEcCCCCeEEEccCCCceEEEEec
Confidence 77777777666664 578888887766442211 1122335678888776655555566788888887
Q ss_pred CC
Q 001380 922 KE 923 (1089)
Q Consensus 922 ~~ 923 (1089)
++
T Consensus 276 ~~ 277 (691)
T KOG2048|consen 276 TN 277 (691)
T ss_pred CC
Confidence 76
No 456
>PLN02645 phosphoglycolate phosphatase
Probab=96.84 E-value=0.0067 Score=68.41 Aligned_cols=90 Identities=16% Similarity=0.190 Sum_probs=70.5
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCC---hHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCc
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSAD---RIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSE 241 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~---~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~ 241 (1089)
.++||+.++|+.|+++|++++++||+. .......++++|+. ..++.|+++.. .....++..+....+
T Consensus 44 ~~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~lGi~-~~~~~I~ts~~---------~~~~~l~~~~~~~~~ 113 (311)
T PLN02645 44 KLIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFESLGLN-VTEEEIFSSSF---------AAAAYLKSINFPKDK 113 (311)
T ss_pred ccCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHCCCC-CChhhEeehHH---------HHHHHHHhhccCCCC
Confidence 568999999999999999999999987 44444556888996 66788887752 444556666664455
Q ss_pred EEEEcCChhhHHHHHHcCCeEEE
Q 001380 242 CIVIEDALAGVQAAKAAQMRCIA 264 (1089)
Q Consensus 242 ~v~VGD~~~Di~aA~~aG~~~i~ 264 (1089)
.++|+++..+.+.++++|+.++.
T Consensus 114 ~V~viG~~~~~~~l~~~Gi~~~~ 136 (311)
T PLN02645 114 KVYVIGEEGILEELELAGFQYLG 136 (311)
T ss_pred EEEEEcCHHHHHHHHHCCCEEec
Confidence 68888889999999999998764
No 457
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=96.83 E-value=0.093 Score=59.59 Aligned_cols=172 Identities=13% Similarity=0.120 Sum_probs=105.2
Q ss_pred eEEEeecCCeEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEEEE
Q 001380 605 KLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREI 684 (1089)
Q Consensus 605 ~vavd~~~g~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~~ 684 (1089)
.+.+++ .|..+++-+++.+..++|.||..+..+-.+ ..-..|=..+.+....-+.-+++|.....|++-...+.+|.+
T Consensus 219 sl~ys~-Tg~~iLvvsg~aqakl~DRdG~~~~e~~KG-DQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiW 296 (641)
T KOG0772|consen 219 SLQYSV-TGDQILVVSGSAQAKLLDRDGFEIVEFSKG-DQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIW 296 (641)
T ss_pred eeeecC-CCCeEEEEecCcceeEEccCCceeeeeecc-chhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEE
Confidence 355665 455555666778888999999876654433 111222222233344556667888877788888888889988
Q ss_pred ECCCC--eEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCccccC
Q 001380 685 DFVND--TVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNL 762 (1089)
Q Consensus 685 d~~~g--~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~~~ 762 (1089)
+.++- ....+-..+..+. --.|...+|+++| .++.+...++.|..|+.-+-.+...---.
T Consensus 297 dv~~~k~q~qVik~k~~~g~------------Rv~~tsC~~nrdg-~~iAagc~DGSIQ~W~~~~~~v~p~~~vk----- 358 (641)
T KOG0772|consen 297 DVNNTKSQLQVIKTKPAGGK------------RVPVTSCAWNRDG-KLIAAGCLDGSIQIWDKGSRTVRPVMKVK----- 358 (641)
T ss_pred ecCCchhheeEEeeccCCCc------------ccCceeeecCCCc-chhhhcccCCceeeeecCCcccccceEee-----
Confidence 87652 2333322222111 1267889999998 55666666788887875332222110000
Q ss_pred CCCCCCCccc--cCCceEEEcCCCCEEEEEeCCCCeEEEEEcC
Q 001380 763 NGSSSLNTSF--AQPSGISLSPDFMEIYVADSESSSIRALNLK 803 (1089)
Q Consensus 763 ~g~~~~~~~~--~~P~glav~~~g~~lyvad~~~~~I~~~~~~ 803 (1089)
.+.. ..-+.|++++|| +...+-.+.+++..+++.
T Consensus 359 ------~AH~~g~~Itsi~FS~dg-~~LlSRg~D~tLKvWDLr 394 (641)
T KOG0772|consen 359 ------DAHLPGQDITSISFSYDG-NYLLSRGFDDTLKVWDLR 394 (641)
T ss_pred ------eccCCCCceeEEEecccc-chhhhccCCCceeeeecc
Confidence 0111 135689999999 677788888899999887
No 458
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=96.83 E-value=0.056 Score=64.47 Aligned_cols=188 Identities=17% Similarity=0.274 Sum_probs=119.7
Q ss_pred eEEEeecCCeEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCc-ceeEEeeCCCEEEEEEC-CCCEEE
Q 001380 605 KLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRP-QGLAYNAKKNLLYVADT-ENHALR 682 (1089)
Q Consensus 605 ~vavd~~~g~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P-~gla~d~~g~~lyVaD~-~n~~I~ 682 (1089)
+..+.| +.++.++-+....+..|..+...-..+-.++. .| ..+.|.|.|. |+|-. ....-+
T Consensus 456 g~sFsP-d~rfLlScSED~svRLWsl~t~s~~V~y~GH~--------------~PVwdV~F~P~Gy--YFatas~D~tAr 518 (707)
T KOG0263|consen 456 GCSFSP-DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHL--------------APVWDVQFAPRGY--YFATASHDQTAR 518 (707)
T ss_pred eeeecc-cccceeeccCCcceeeeecccceeEEEecCCC--------------cceeeEEecCCce--EEEecCCCceee
Confidence 567887 78888998888888888887554433333211 23 3455667664 44433 233334
Q ss_pred EEECCC-CeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEE-ECCCcEEEEEECCCCe-EEEEeCCCcc
Q 001380 683 EIDFVN-DTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIA-MAGQHQIWEHSTVDGV-TRAFSGDGYE 759 (1089)
Q Consensus 683 ~~d~~~-g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyva-d~~~~~I~~~~~~~g~-~~~~~g~g~~ 759 (1089)
.+..+. .-.+.++| +++.-.-+.|+|+.+ |++ ....+.|+.||..+|. ++.|.|..
T Consensus 519 LWs~d~~~PlRifag-----------------hlsDV~cv~FHPNs~--Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~-- 577 (707)
T KOG0263|consen 519 LWSTDHNKPLRIFAG-----------------HLSDVDCVSFHPNSN--YVATGSSDRTVRLWDVSTGNSVRIFTGHK-- 577 (707)
T ss_pred eeecccCCchhhhcc-----------------cccccceEEECCccc--ccccCCCCceEEEEEcCCCcEEEEecCCC--
Confidence 444333 22333332 345566689999763 444 3456788889987764 56665432
Q ss_pred ccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCe-EEEecCCCCCCCCccccCCCCCccccccccC
Q 001380 760 RNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGS-RLLAGGDPIFPDNLFKFGDRDGMGSEVLLQH 838 (1089)
Q Consensus 760 ~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~-~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~ 838 (1089)
.--..|+++|+| +-.++-.+.+.|..+|..++.. ..+.+ +. ..
T Consensus 578 -------------~~V~al~~Sp~G-r~LaSg~ed~~I~iWDl~~~~~v~~l~~-------------Ht---------~t 621 (707)
T KOG0263|consen 578 -------------GPVTALAFSPCG-RYLASGDEDGLIKIWDLANGSLVKQLKG-------------HT---------GT 621 (707)
T ss_pred -------------CceEEEEEcCCC-ceEeecccCCcEEEEEcCCCcchhhhhc-------------cc---------Cc
Confidence 124689999998 5556667889999999886433 22222 11 12
Q ss_pred ceEEEEccCCcEEEEeCCCCEEEEEeCC
Q 001380 839 PLGVYCAKNGQIYVADSYNHKIKKLDPA 866 (1089)
Q Consensus 839 P~gva~~~~G~lyVaD~~n~~I~~~d~~ 866 (1089)
-..+.++.+|.++|++..++.|+..|..
T Consensus 622 i~SlsFS~dg~vLasgg~DnsV~lWD~~ 649 (707)
T KOG0263|consen 622 IYSLSFSRDGNVLASGGADNSVRLWDLT 649 (707)
T ss_pred eeEEEEecCCCEEEecCCCCeEEEEEch
Confidence 4568889999999999999999999863
No 459
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=96.81 E-value=0.013 Score=70.23 Aligned_cols=123 Identities=23% Similarity=0.350 Sum_probs=76.5
Q ss_pred cccCCcceeEEeeCCCEEEEEECCCC-------------------EEEEEECCCC-------eEEEEecCCCCCCC-CCC
Q 001380 654 ATFNRPQGLAYNAKKNLLYVADTENH-------------------ALREIDFVND-------TVRTLAGNGTKGSD-YQG 706 (1089)
Q Consensus 654 ~~f~~P~gla~d~~g~~lyVaD~~n~-------------------~I~~~d~~~g-------~v~~~ag~g~~~~~-~~~ 706 (1089)
..|.+|.+|.++|....+|++-+.+. .|++++++++ ....+.-.|..... ...
T Consensus 347 T~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~ 426 (524)
T PF05787_consen 347 TPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNG 426 (524)
T ss_pred ccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCcccccccc
Confidence 46999999999998778999987665 7888887765 44444433321100 011
Q ss_pred CCcccccccCCceeEEEecCCCEEEEE-ECCCcEE----------------------EEEECCCCeEEEEeCCCccccCC
Q 001380 707 GEKGTSQLLNSPWDVCYKPINEKVYIA-MAGQHQI----------------------WEHSTVDGVTRAFSGDGYERNLN 763 (1089)
Q Consensus 707 ~~~~~~~~l~~P~~la~~~~g~~lyva-d~~~~~I----------------------~~~~~~~g~~~~~~g~g~~~~~~ 763 (1089)
........|++|..|+|++.| .|||+ |.+.+.. +..++..+.+.+|...
T Consensus 427 ~~~~~~~~f~sPDNL~~d~~G-~LwI~eD~~~~~~~l~g~t~~G~~~~~~~~~G~~~~~~~~~~g~~~rf~~~------- 498 (524)
T PF05787_consen 427 SNKCDDNGFASPDNLAFDPDG-NLWIQEDGGGSNNNLPGVTPDGEVYDFARNDGNNVWAYDPDTGELKRFLVG------- 498 (524)
T ss_pred cCcccCCCcCCCCceEECCCC-CEEEEeCCCCCCcccccccccCceeeeeecccceeeeccccccceeeeccC-------
Confidence 222335568999999999988 56765 4444331 1122233333333310
Q ss_pred CCCCCCccccCCceEEEcCCCCEEEEE
Q 001380 764 GSSSLNTSFAQPSGISLSPDFMEIYVA 790 (1089)
Q Consensus 764 g~~~~~~~~~~P~glav~~~g~~lyva 790 (1089)
..-+...|++++||++.|||.
T Consensus 499 ------P~gaE~tG~~fspDg~tlFvn 519 (524)
T PF05787_consen 499 ------PNGAEITGPCFSPDGRTLFVN 519 (524)
T ss_pred ------CCCcccccceECCCCCEEEEE
Confidence 111345799999999999985
No 460
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=96.79 E-value=0.43 Score=51.27 Aligned_cols=205 Identities=14% Similarity=0.179 Sum_probs=121.5
Q ss_pred CCCCCCCCCceEE--EeecCCeEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEE
Q 001380 595 LFTSPLKFPGKLA--IDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLY 672 (1089)
Q Consensus 595 ~~~~~l~~P~~va--vd~~~g~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~ly 672 (1089)
.....|..|...+ +++ .|.+....-.+|||+++|.+..-+..+-+. ...--+.|+.+++|+ ..
T Consensus 16 el~~tld~~~a~~~~Fs~-~G~~lAvGc~nG~vvI~D~~T~~iar~lsa-------------H~~pi~sl~WS~dgr-~L 80 (405)
T KOG1273|consen 16 ELTHTLDNPLAECCQFSR-WGDYLAVGCANGRVVIYDFDTFRIARMLSA-------------HVRPITSLCWSRDGR-KL 80 (405)
T ss_pred hhceeccCCccceEEecc-CcceeeeeccCCcEEEEEccccchhhhhhc-------------cccceeEEEecCCCC-Ee
Confidence 3445566666444 454 677777777889999999876544322221 112348999999999 55
Q ss_pred EEECCCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCc-eeEEEecCCCEEEEEECCC--cEEEEEECCCCe
Q 001380 673 VADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSP-WDVCYKPINEKVYIAMAGQ--HQIWEHSTVDGV 749 (1089)
Q Consensus 673 VaD~~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P-~~la~~~~g~~lyvad~~~--~~I~~~~~~~g~ 749 (1089)
++-.....|..+|+..|..-.- ..|++| |+.-++|...+..|+..-. -.+..++ +++
T Consensus 81 ltsS~D~si~lwDl~~gs~l~r------------------irf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s--~~~ 140 (405)
T KOG1273|consen 81 LTSSRDWSIKLWDLLKGSPLKR------------------IRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFS--DPK 140 (405)
T ss_pred eeecCCceeEEEeccCCCceeE------------------EEccCccceeeeccccCCeEEEEEecCCcEEEEec--CCc
Confidence 6656677899999866542222 225566 7888998887776664332 3333333 333
Q ss_pred EEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCC
Q 001380 750 TRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDG 829 (1089)
Q Consensus 750 ~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg 829 (1089)
-+.+..+. ++... ..++...+++.|+++|...+ .+.+..++..+-.. ++.- -
T Consensus 141 h~~Lp~d~-----d~dln-----~sas~~~fdr~g~yIitGts-KGkllv~~a~t~e~--vas~-----------r---- 192 (405)
T KOG1273|consen 141 HSVLPKDD-----DGDLN-----SSASHGVFDRRGKYIITGTS-KGKLLVYDAETLEC--VASF-----------R---- 192 (405)
T ss_pred eeeccCCC-----ccccc-----cccccccccCCCCEEEEecC-cceEEEEecchhee--eeee-----------e----
Confidence 33333211 11100 12333467888867766554 57788887664322 2110 0
Q ss_pred ccccccccCceEEEEccCCcEEEEeCCCCEEEEEeC
Q 001380 830 MGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDP 865 (1089)
Q Consensus 830 ~~~~~~l~~P~gva~~~~G~lyVaD~~n~~I~~~d~ 865 (1089)
....+.-..|-+.-.|..++.++....|+.++.
T Consensus 193 ---its~~~IK~I~~s~~g~~liiNtsDRvIR~ye~ 225 (405)
T KOG1273|consen 193 ---ITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEI 225 (405)
T ss_pred ---echheeeeEEEEeccCcEEEEecCCceEEEEeh
Confidence 000234556777778999999998888888874
No 461
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=96.79 E-value=0.015 Score=70.96 Aligned_cols=85 Identities=15% Similarity=0.200 Sum_probs=63.8
Q ss_pred CCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCcE
Q 001380 163 SGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSEC 242 (1089)
Q Consensus 163 ~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~ 242 (1089)
...+.|++...+..||++|++++.+|+.+...++.+.+++|++ .+++. .+|... ....+++.-....+
T Consensus 721 ~D~vr~~a~~av~~Lk~~Gi~v~mLTGDn~~aA~svA~~VGi~-----~V~ae-----v~P~~K--~~~Ik~lq~~~~~V 788 (951)
T KOG0207|consen 721 EDQVRPDAALAVAELKSMGIKVVMLTGDNDAAARSVAQQVGID-----NVYAE-----VLPEQK--AEKIKEIQKNGGPV 788 (951)
T ss_pred ccccchhHHHHHHHHHhcCceEEEEcCCCHHHHHHHHHhhCcc-----eEEec-----cCchhh--HHHHHHHHhcCCcE
Confidence 3467899999999999999999999999999999999999965 33332 233221 22333443333669
Q ss_pred EEEcCChhhHHHHHHcC
Q 001380 243 IVIEDALAGVQAAKAAQ 259 (1089)
Q Consensus 243 v~VGD~~~Di~aA~~aG 259 (1089)
.||||+.||--+...|.
T Consensus 789 aMVGDGINDaPALA~Ad 805 (951)
T KOG0207|consen 789 AMVGDGINDAPALAQAD 805 (951)
T ss_pred EEEeCCCCccHHHHhhc
Confidence 99999999977776665
No 462
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=96.78 E-value=0.0065 Score=65.90 Aligned_cols=111 Identities=17% Similarity=0.235 Sum_probs=68.0
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCCh-----------hcHH-HHHHHHHHcCC---c
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNE-----------KDLE-AIRNAVLRYGI---S 516 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~-----------~~~~-~~~~~~~~~~~---~ 516 (1089)
.+|.+|+.|.-+-||+|++.++++.++.+. . ++.+.-+-++-...+ ++++ .|..+...+.. .
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~-g--~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~ 192 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS-G--KVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLK 192 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhhc-C--ceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCC
Confidence 578899999999999999999999887654 1 244333322111111 1111 12222111111 1
Q ss_pred cce--------eecCChhHHHHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHH
Q 001380 517 HPV--------VNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVE 566 (1089)
Q Consensus 517 ~~v--------~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~ 566 (1089)
-+. ..+.+.++++++||+++|++|+.|.+|++ ....|....+++.+.+.
T Consensus 193 ~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~-~~v~G~~~~~~L~~~l~ 249 (251)
T PRK11657 193 PPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTL-QQVVGLPDPAQLAEIMG 249 (251)
T ss_pred ccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCE-EEecCCCCHHHHHHHhC
Confidence 110 11234568889999999999999999965 34567777888877653
No 463
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=96.77 E-value=0.14 Score=54.84 Aligned_cols=199 Identities=14% Similarity=0.191 Sum_probs=124.6
Q ss_pred ceeEEeeCCCEEEEEECCCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcE
Q 001380 660 QGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQ 739 (1089)
Q Consensus 660 ~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~ 739 (1089)
..+.|++.|. +......|++|..+|..+..+..+.+.- ..--..++|+++| +..++......
T Consensus 27 ~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T~~iar~lsaH----------------~~pi~sl~WS~dg-r~LltsS~D~s 88 (405)
T KOG1273|consen 27 ECCQFSRWGD-YLAVGCANGRVVIYDFDTFRIARMLSAH----------------VRPITSLCWSRDG-RKLLTSSRDWS 88 (405)
T ss_pred ceEEeccCcc-eeeeeccCCcEEEEEccccchhhhhhcc----------------ccceeEEEecCCC-CEeeeecCCce
Confidence 4566777887 3344556899999998875544443211 1223679999998 67777777888
Q ss_pred EEEEECCCCeEE-EEeCCCccccCCCCCCCCccccCC-ceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCC
Q 001380 740 IWEHSTVDGVTR-AFSGDGYERNLNGSSSLNTSFAQP-SGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIF 817 (1089)
Q Consensus 740 I~~~~~~~g~~~-~~~g~g~~~~~~g~~~~~~~~~~P-~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~ 817 (1089)
|..||...|.+. .+ .|..| .+..+.|...+.+|+.....+=..++..+...+.+...+.
T Consensus 89 i~lwDl~~gs~l~ri-----------------rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d-- 149 (405)
T KOG1273|consen 89 IKLWDLLKGSPLKRI-----------------RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDD-- 149 (405)
T ss_pred eEEEeccCCCceeEE-----------------EccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCc--
Confidence 989998766432 22 23333 3566677655677666554444555555444444443221
Q ss_pred CCCccccCCCCCccccccccCceEEEEccCCcEEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceE
Q 001380 818 PDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGI 897 (1089)
Q Consensus 818 ~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi 897 (1089)
|+.+. .+....+|+.|+..++.+..+++.++|..+-.+...-- .. ..+.-..|
T Consensus 150 -------~dln~--------sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~r--it----------s~~~IK~I 202 (405)
T KOG1273|consen 150 -------GDLNS--------SASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFR--IT----------SVQAIKQI 202 (405)
T ss_pred -------ccccc--------ccccccccCCCCEEEEecCcceEEEEecchheeeeeee--ec----------hheeeeEE
Confidence 22221 23334678999988888899999999976654322211 00 12334567
Q ss_pred EEccCCcEEEEECCCCEEEEEeCCC
Q 001380 898 IEAQNGNLFIADTNNNIIRYLDLNK 922 (1089)
Q Consensus 898 ~vd~~G~lyVad~~n~~I~~~~~~~ 922 (1089)
-+.-.|+.++.++....||.++...
T Consensus 203 ~~s~~g~~liiNtsDRvIR~ye~~d 227 (405)
T KOG1273|consen 203 IVSRKGRFLIINTSDRVIRTYEISD 227 (405)
T ss_pred EEeccCcEEEEecCCceEEEEehhh
Confidence 7777888899999999999988763
No 464
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=96.77 E-value=0.072 Score=58.86 Aligned_cols=154 Identities=14% Similarity=0.111 Sum_probs=104.8
Q ss_pred eeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEE
Q 001380 719 WDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIR 798 (1089)
Q Consensus 719 ~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~ 798 (1089)
.-|.|+|+.+ -.++......++.+|..+|.....-++|. -..++..++-||| .=+|+.+-...|.
T Consensus 273 ~yi~wSPDdr-yLlaCg~~e~~~lwDv~tgd~~~~y~~~~-------------~~S~~sc~W~pDg-~~~V~Gs~dr~i~ 337 (519)
T KOG0293|consen 273 SYIMWSPDDR-YLLACGFDEVLSLWDVDTGDLRHLYPSGL-------------GFSVSSCAWCPDG-FRFVTGSPDRTII 337 (519)
T ss_pred EEEEECCCCC-eEEecCchHheeeccCCcchhhhhcccCc-------------CCCcceeEEccCC-ceeEecCCCCcEE
Confidence 4588999884 44555556678999998888776654431 1246788999999 6688888888899
Q ss_pred EEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccCCc-EEEEeCCCCEEEEEeCCCCeEEEEeccC
Q 001380 799 ALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQ-IYVADSYNHKIKKLDPASNRVSTLAGIG 877 (1089)
Q Consensus 799 ~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~-lyVaD~~n~~I~~~d~~~~~v~t~~g~g 877 (1089)
.++++++...... ..+.+.-..+++.+||. ++..+ ...+|+.++..+....-+...
T Consensus 338 ~wdlDgn~~~~W~---------------------gvr~~~v~dlait~Dgk~vl~v~-~d~~i~l~~~e~~~dr~lise- 394 (519)
T KOG0293|consen 338 MWDLDGNILGNWE---------------------GVRDPKVHDLAITYDGKYVLLVT-VDKKIRLYNREARVDRGLISE- 394 (519)
T ss_pred EecCCcchhhccc---------------------ccccceeEEEEEcCCCcEEEEEe-cccceeeechhhhhhhccccc-
Confidence 9998864322111 11234567899999996 44444 556788777654332212111
Q ss_pred CCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEEEEeCCCC
Q 001380 878 KAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLDLNKE 923 (1089)
Q Consensus 878 ~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~~~~~~ 923 (1089)
-..-+.+++..+|++.+++..++.|+..++...
T Consensus 395 -------------~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~ 427 (519)
T KOG0293|consen 395 -------------EQPITSFSISKDGKLALVNLQDQEIHLWDLEEN 427 (519)
T ss_pred -------------cCceeEEEEcCCCcEEEEEcccCeeEEeecchh
Confidence 122467889999999999999999999999854
No 465
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=96.74 E-value=0.0055 Score=79.50 Aligned_cols=122 Identities=16% Similarity=0.187 Sum_probs=86.0
Q ss_pred CCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCcc----------------CCCCCHHH
Q 001380 164 GIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFE----------------NLKPAPDI 227 (1089)
Q Consensus 164 ~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~----------------~~KP~~~~ 227 (1089)
.++.|++.+.++.|+++|+++.++|+.+...+..+.+++|+. .--..++++++.. ...-.|+-
T Consensus 578 Dplr~~~~~aI~~l~~aGI~v~miTGD~~~tA~~iA~~~GI~-~~~~~vi~G~~~~~l~~~el~~~i~~~~Vfar~sPe~ 656 (941)
T TIGR01517 578 DPLRPGVREAVQECQRAGITVRMVTGDNIDTAKAIARNCGIL-TFGGLAMEGKEFRRLVYEEMDPILPKLRVLARSSPLD 656 (941)
T ss_pred CCCchhHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHcCCC-CCCceEeeHHHhhhCCHHHHHHHhccCeEEEECCHHH
Confidence 367899999999999999999999999999999999999994 3222344333211 12334444
Q ss_pred HHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEec--CcccC
Q 001380 228 FLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRK--EIGSV 289 (1089)
Q Consensus 228 ~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~--dl~el 289 (1089)
-.++.+.+.-.-+.+.|+||+.||..|-++|. |+|..|.+..+.....+|+++. +|..+
T Consensus 657 K~~iV~~lq~~g~vVam~GDGvNDapALk~Ad---VGIAmg~~gtdvAk~aADivL~dd~f~~I 717 (941)
T TIGR01517 657 KQLLVLMLKDMGEVVAVTGDGTNDAPALKLAD---VGFSMGISGTEVAKEASDIILLDDNFASI 717 (941)
T ss_pred HHHHHHHHHHCCCEEEEECCCCchHHHHHhCC---cceecCCCccHHHHHhCCEEEecCCHHHH
Confidence 44555555444457999999999999999998 6666663233334446788876 45444
No 466
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=96.73 E-value=0.024 Score=68.44 Aligned_cols=42 Identities=2% Similarity=-0.054 Sum_probs=35.3
Q ss_pred CCCCHHHHHHHHHHcCCCCCcEEEE--cCChhhHHHHHHcCCeE
Q 001380 221 LKPAPDIFLSASKILNVPTSECIVI--EDALAGVQAAKAAQMRC 262 (1089)
Q Consensus 221 ~KP~~~~~~~~l~~lgv~p~~~v~V--GD~~~Di~aA~~aG~~~ 262 (1089)
+-.|...++.+++.+|+..++++.| ||+.||+.|-+.+|...
T Consensus 611 gvdKG~AL~~L~e~~gI~~~eViafalGDs~NDisMLe~Ag~gV 654 (694)
T PRK14502 611 GNDKGKAIKILNELFRLNFGNIHTFGLGDSENDYSMLETVDSPI 654 (694)
T ss_pred CCCHHHHHHHHHHHhCCCccceEEEEcCCcHhhHHHHHhCCceE
Confidence 3455666888889999988899998 99999999999999643
No 467
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=96.70 E-value=0.045 Score=61.70 Aligned_cols=199 Identities=13% Similarity=0.146 Sum_probs=126.7
Q ss_pred EEEeecCCeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEEEE
Q 001380 606 LAIDILNNRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREI 684 (1089)
Q Consensus 606 vavd~~~g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~~ 684 (1089)
++++. .|.=|.+-+....|..+|.. |+.+..+-.. .-|.-+-+.|++..+|++.+.+.+|+.+
T Consensus 264 ~~~s~-~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~---------------~~~~cvkf~pd~~n~fl~G~sd~ki~~w 327 (503)
T KOG0282|consen 264 ASFNN-CGTSFLSASFDRFLKLWDTETGQVLSRFHLD---------------KVPTCVKFHPDNQNIFLVGGSDKKIRQW 327 (503)
T ss_pred hhccc-cCCeeeeeecceeeeeeccccceEEEEEecC---------------CCceeeecCCCCCcEEEEecCCCcEEEE
Confidence 45554 55666666666777778876 7776665443 2578888889885599999999999999
Q ss_pred ECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCccccCCC
Q 001380 685 DFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNG 764 (1089)
Q Consensus 685 d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~~~~g 764 (1089)
|..++.+..-. ...|..-.+|.|-+.| .-||+......++.|+...+....+.-.
T Consensus 328 DiRs~kvvqeY----------------d~hLg~i~~i~F~~~g-~rFissSDdks~riWe~~~~v~ik~i~~-------- 382 (503)
T KOG0282|consen 328 DIRSGKVVQEY----------------DRHLGAILDITFVDEG-RRFISSSDDKSVRIWENRIPVPIKNIAD-------- 382 (503)
T ss_pred eccchHHHHHH----------------HhhhhheeeeEEccCC-ceEeeeccCccEEEEEcCCCccchhhcc--------
Confidence 98776633221 1234566788888877 6666655555555554333322222100
Q ss_pred CCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEE
Q 001380 765 SSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYC 844 (1089)
Q Consensus 765 ~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~ 844 (1089)
.....-| .|++.|.+ ..+++.+..++|..++....... +..-.|.-.... ..+..+.+
T Consensus 383 ----~~~hsmP-~~~~~P~~-~~~~aQs~dN~i~ifs~~~~~r~--------nkkK~feGh~va--------Gys~~v~f 440 (503)
T KOG0282|consen 383 ----PEMHTMP-CLTLHPNG-KWFAAQSMDNYIAIFSTVPPFRL--------NKKKRFEGHSVA--------GYSCQVDF 440 (503)
T ss_pred ----hhhccCc-ceecCCCC-CeehhhccCceEEEEeccccccc--------CHhhhhcceecc--------CceeeEEE
Confidence 1122223 58889988 88899999999999875421110 000011101111 25778899
Q ss_pred ccCCcEEEEeCCCCEEEEEeCCC
Q 001380 845 AKNGQIYVADSYNHKIKKLDPAS 867 (1089)
Q Consensus 845 ~~~G~lyVaD~~n~~I~~~d~~~ 867 (1089)
+|||...++....+++..+|-.+
T Consensus 441 SpDG~~l~SGdsdG~v~~wdwkt 463 (503)
T KOG0282|consen 441 SPDGRTLCSGDSDGKVNFWDWKT 463 (503)
T ss_pred cCCCCeEEeecCCccEEEeechh
Confidence 99999999988999999998754
No 468
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=96.69 E-value=0.0072 Score=63.33 Aligned_cols=103 Identities=22% Similarity=0.298 Sum_probs=61.3
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChh-------------cHHHHHHHHHHcCCc--
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEK-------------DLEAIRNAVLRYGIS-- 516 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~-------------~~~~~~~~~~~~~~~-- 516 (1089)
.+++.++.|..+.|++|++..+.+.+ .-.+..+.++.+... .++. ..+.|.++.......
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~---~~~~v~v~~~~~p~~--~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~ 150 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKP---NADGVTVRIFPVPIL--GLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPP 150 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhh---ccCceEEEEEEcCcC--CCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCC
Confidence 47899999999999999999999877 112223444443321 1111 122233333222221
Q ss_pred c---ceeecCChhHHHHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHH
Q 001380 517 H---PVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDL 564 (1089)
Q Consensus 517 ~---~v~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~ 564 (1089)
. ..-.+.+.++++.+||.++|+++ + .+|+. ..|....+.+.++
T Consensus 151 ~~~~~~~i~~~~~l~~~~gi~gtPtii-~-~~G~~---~~G~~~~~~l~~~ 196 (197)
T cd03020 151 AASCDNPVAANLALGRQLGVNGTPTIV-L-ADGRV---VPGAPPAAQLEAL 196 (197)
T ss_pred ccccCchHHHHHHHHHHcCCCcccEEE-E-CCCeE---ecCCCCHHHHHhh
Confidence 1 11223456788999999999997 4 45765 4576666666554
No 469
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=96.67 E-value=0.0039 Score=62.31 Aligned_cols=80 Identities=18% Similarity=0.165 Sum_probs=63.9
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCc-cEEEEcCCccCCCCCHHHHHHHH-HHcCCCCCcE
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMF-DAIVSADAFENLKPAPDIFLSAS-KILNVPTSEC 242 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~f-d~i~~~~~~~~~KP~~~~~~~~l-~~lgv~p~~~ 242 (1089)
.++||+.++|+.|++. +.++|+|++.++.+..+++.++....+| +.+++.++... + +.+-+ ..++.+.+.+
T Consensus 58 ~~rPgv~efL~~l~~~-yel~I~T~~~~~yA~~vl~~ldp~~~~F~~ri~~rd~~~~--~----~~KdL~~i~~~d~~~v 130 (156)
T TIGR02250 58 KLRPFLHEFLKEASKL-YEMHVYTMGTRAYAQAIAKLIDPDGKYFGDRIISRDESGS--P----HTKSLLRLFPADESMV 130 (156)
T ss_pred EECCCHHHHHHHHHhh-cEEEEEeCCcHHHHHHHHHHhCcCCCeeccEEEEeccCCC--C----ccccHHHHcCCCcccE
Confidence 6799999999999976 9999999999999999999999864588 77888776531 1 11223 3457788999
Q ss_pred EEEcCChhh
Q 001380 243 IVIEDALAG 251 (1089)
Q Consensus 243 v~VGD~~~D 251 (1089)
++|+|+..=
T Consensus 131 vivDd~~~~ 139 (156)
T TIGR02250 131 VIIDDREDV 139 (156)
T ss_pred EEEeCCHHH
Confidence 999999843
No 470
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=96.65 E-value=0.0054 Score=78.67 Aligned_cols=115 Identities=13% Similarity=0.130 Sum_probs=83.4
Q ss_pred CCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCcc----------------CCCCCHHH
Q 001380 164 GIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFE----------------NLKPAPDI 227 (1089)
Q Consensus 164 ~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~----------------~~KP~~~~ 227 (1089)
.++.|++.+.++.|+++|+++.++|+.+...+..+.+++|+. -+.++++.+.. ...-.|+-
T Consensus 549 Dp~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA~~lGI~---~~~v~~G~el~~l~~~el~~~~~~~~VfAr~sPe~ 625 (902)
T PRK10517 549 DPPKETTAPALKALKASGVTVKILTGDSELVAAKVCHEVGLD---AGEVLIGSDIETLSDDELANLAERTTLFARLTPMH 625 (902)
T ss_pred CcchhhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCC---ccCceeHHHHHhCCHHHHHHHHhhCcEEEEcCHHH
Confidence 366899999999999999999999999999999999999995 23445544322 12334444
Q ss_pred HHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecC
Q 001380 228 FLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKE 285 (1089)
Q Consensus 228 ~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~d 285 (1089)
-.++.+.+.-.-+-+.|+||+.||..+.++|. |+|..|. ..+.....+|.|+-+
T Consensus 626 K~~IV~~Lq~~G~vVam~GDGvNDaPALk~AD---VGIAmg~-gtdvAkeaADiVLld 679 (902)
T PRK10517 626 KERIVTLLKREGHVVGFMGDGINDAPALRAAD---IGISVDG-AVDIAREAADIILLE 679 (902)
T ss_pred HHHHHHHHHHCCCEEEEECCCcchHHHHHhCC---EEEEeCC-cCHHHHHhCCEEEec
Confidence 45555555444466999999999999999998 5555553 233444467877743
No 471
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.65 E-value=0.0075 Score=70.24 Aligned_cols=90 Identities=19% Similarity=0.299 Sum_probs=69.2
Q ss_pred CCEEEEEEecCCCcchhhhhhhHHHHHHHcCC-CCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 453 GKVVVLDFWTYCCINCMHVLPDLEFLEKKYKD-MPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 453 gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~-~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
.+.+++.|+++||++|+..+|.+.++...++. ..+.+..+.. +....++..+
T Consensus 162 ~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~---------------------------~~~~~~~~~~ 214 (383)
T KOG0191|consen 162 DADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDA---------------------------TVHKSLASRL 214 (383)
T ss_pred CcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeecc---------------------------chHHHHhhhh
Confidence 46788999999999999999999999998873 5677777732 2356788999
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHH
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAAL 569 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l 569 (1089)
+|...|+..++-++......+.+..+.+.+..++....
T Consensus 215 ~v~~~Pt~~~f~~~~~~~~~~~~~R~~~~i~~~v~~~~ 252 (383)
T KOG0191|consen 215 EVRGYPTLKLFPPGEEDIYYYSGLRDSDSIVSFVEKKE 252 (383)
T ss_pred cccCCceEEEecCCCcccccccccccHHHHHHHHHhhc
Confidence 99999999999555552445666667777777765543
No 472
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=96.64 E-value=0.27 Score=55.78 Aligned_cols=196 Identities=13% Similarity=0.162 Sum_probs=127.2
Q ss_pred cceeEEeeCCCEEEEEECCCCEEEEEECCCCeE-EEEecCCCCCCCCCCCCcccccccCCce-eEEEecCCCEEEEEECC
Q 001380 659 PQGLAYNAKKNLLYVADTENHALREIDFVNDTV-RTLAGNGTKGSDYQGGEKGTSQLLNSPW-DVCYKPINEKVYIAMAG 736 (1089)
Q Consensus 659 P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~v-~~~ag~g~~~~~~~~~~~~~~~~l~~P~-~la~~~~g~~lyvad~~ 736 (1089)
-.++.|-.||. |+.|.-..+.|+.||.++..+ +.+-+. ..|. -+-|.|.++.+++....
T Consensus 71 v~s~~fR~DG~-LlaaGD~sG~V~vfD~k~r~iLR~~~ah------------------~apv~~~~f~~~d~t~l~s~sD 131 (487)
T KOG0310|consen 71 VYSVDFRSDGR-LLAAGDESGHVKVFDMKSRVILRQLYAH------------------QAPVHVTKFSPQDNTMLVSGSD 131 (487)
T ss_pred eeEEEeecCCe-EEEccCCcCcEEEeccccHHHHHHHhhc------------------cCceeEEEecccCCeEEEecCC
Confidence 36788888898 666666777899999654222 222110 1343 35577888888887776
Q ss_pred CcEEEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCC
Q 001380 737 QHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPI 816 (1089)
Q Consensus 737 ~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~ 816 (1089)
...+..||..+..+. ..-+| .-..-...++.|..+.|+++-+..+.|+.++........+.
T Consensus 132 d~v~k~~d~s~a~v~-~~l~~-------------htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~e----- 192 (487)
T KOG0310|consen 132 DKVVKYWDLSTAYVQ-AELSG-------------HTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVE----- 192 (487)
T ss_pred CceEEEEEcCCcEEE-EEecC-------------CcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEE-----
Confidence 677777888777763 22222 12234566777777799999999999999997754322211
Q ss_pred CCCCccccCCCCCccccccccCc-eEEEEccCCcEEEEeCCCCEEEEEeCC-CCeEEEEeccCCCCCCCCcccccccCCC
Q 001380 817 FPDNLFKFGDRDGMGSEVLLQHP-LGVYCAKNGQIYVADSYNHKIKKLDPA-SNRVSTLAGIGKAGFKDGAALAAQLSEP 894 (1089)
Q Consensus 817 ~~~~l~~~g~~dg~~~~~~l~~P-~gva~~~~G~lyVaD~~n~~I~~~d~~-~~~v~t~~g~g~~g~~~g~~~~~~l~~P 894 (1089)
+. -.+| ..|.+-|.|.+.++-. .+.|+++|.. |++..+...+ ....-
T Consensus 193 -------ln----------hg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~~~~-------------H~KtV 241 (487)
T KOG0310|consen 193 -------LN----------HGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLLTSMFN-------------HNKTV 241 (487)
T ss_pred -------ec----------CCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceehhhhhc-------------ccceE
Confidence 00 0134 3456668888877764 4679999987 4443333221 23457
Q ss_pred ceEEEccCCcEEEEECCCCEEEEEeCCCC
Q 001380 895 AGIIEAQNGNLFIADTNNNIIRYLDLNKE 923 (1089)
Q Consensus 895 ~gi~vd~~G~lyVad~~n~~I~~~~~~~~ 923 (1089)
+++++..+++-+++-.-.+.+.+|+....
T Consensus 242 TcL~l~s~~~rLlS~sLD~~VKVfd~t~~ 270 (487)
T KOG0310|consen 242 TCLRLASDSTRLLSGSLDRHVKVFDTTNY 270 (487)
T ss_pred EEEEeecCCceEeecccccceEEEEccce
Confidence 78899888887778888899999996554
No 473
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=96.63 E-value=0.74 Score=51.59 Aligned_cols=194 Identities=11% Similarity=0.115 Sum_probs=118.1
Q ss_pred cceeEEeeCCCEEEEEECCCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCc
Q 001380 659 PQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQH 738 (1089)
Q Consensus 659 P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~ 738 (1089)
..++.+++.|+++..|+. .+..-.-|..+|..-+....-. .+ -.-...+|+|+| .||.+...++
T Consensus 306 V~~ls~h~tgeYllsAs~-d~~w~Fsd~~~g~~lt~vs~~~--s~------------v~~ts~~fHpDg-Lifgtgt~d~ 369 (506)
T KOG0289|consen 306 VTGLSLHPTGEYLLSASN-DGTWAFSDISSGSQLTVVSDET--SD------------VEYTSAAFHPDG-LIFGTGTPDG 369 (506)
T ss_pred ceeeeeccCCcEEEEecC-CceEEEEEccCCcEEEEEeecc--cc------------ceeEEeeEcCCc-eEEeccCCCc
Confidence 378889999997777763 3334445566666666553211 10 134678899998 9999999999
Q ss_pred EEEEEECCCCe-EEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCC-eEEEecCCCC
Q 001380 739 QIWEHSTVDGV-TRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGG-SRLLAGGDPI 816 (1089)
Q Consensus 739 ~I~~~~~~~g~-~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~-~~~~~g~~~~ 816 (1089)
.|..||+..+. +..|.|.. .--..|+++.+| +..++..+.+.|+.+|+..-. .+++.
T Consensus 370 ~vkiwdlks~~~~a~Fpght---------------~~vk~i~FsENG-Y~Lat~add~~V~lwDLRKl~n~kt~~----- 428 (506)
T KOG0289|consen 370 VVKIWDLKSQTNVAKFPGHT---------------GPVKAISFSENG-YWLATAADDGSVKLWDLRKLKNFKTIQ----- 428 (506)
T ss_pred eEEEEEcCCccccccCCCCC---------------CceeEEEeccCc-eEEEEEecCCeEEEEEehhhcccceee-----
Confidence 99999987553 33444321 123578998887 777777788889999987321 11111
Q ss_pred CCCCccccCCCCCccccccccCceEEEEccCCcEEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCce
Q 001380 817 FPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAG 896 (1089)
Q Consensus 817 ~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~g 896 (1089)
..+ ...-..+.+|..|...+.-...=+|+.++..++.-+.+..... ...--+|
T Consensus 429 ---------l~~-------~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~-----------~sg~st~ 481 (506)
T KOG0289|consen 429 ---------LDE-------KKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELAD-----------HSGLSTG 481 (506)
T ss_pred ---------ccc-------cccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhh-----------cccccce
Confidence 000 1134568889889766655555567777765555444432110 0112345
Q ss_pred EEEccCCcEEEEECCCCEEEE
Q 001380 897 IIEAQNGNLFIADTNNNIIRY 917 (1089)
Q Consensus 897 i~vd~~G~lyVad~~n~~I~~ 917 (1089)
+.+.. ...|++++.+.++.+
T Consensus 482 v~Fg~-~aq~l~s~smd~~l~ 501 (506)
T KOG0289|consen 482 VRFGE-HAQYLASTSMDAILR 501 (506)
T ss_pred eeecc-cceEEeeccchhheE
Confidence 55653 357888887777643
No 474
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=96.60 E-value=0.0082 Score=78.22 Aligned_cols=124 Identities=11% Similarity=0.204 Sum_probs=86.9
Q ss_pred CCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCC---------ccEEEEcCCcc--------------
Q 001380 163 SGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSM---------FDAIVSADAFE-------------- 219 (1089)
Q Consensus 163 ~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~---------fd~i~~~~~~~-------------- 219 (1089)
..++.|++.+.++.|+++|+++.++|+.+...+..+.+++|+.... -+.++++.+..
T Consensus 644 ~Dp~r~~v~~aI~~l~~aGIkv~MiTGD~~~tA~~iA~~~Gi~~~~~~~~~~~~~~~~vitG~~l~~l~~~~l~~~~~~~ 723 (1053)
T TIGR01523 644 YDPPRNESAGAVEKCHQAGINVHMLTGDFPETAKAIAQEVGIIPPNFIHDRDEIMDSMVMTGSQFDALSDEEVDDLKALC 723 (1053)
T ss_pred ecCCchhHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHcCCCCccccccccccccceeeehHHhhhcCHHHHHHHhhcC
Confidence 3478999999999999999999999999999999999999994111 12344443322
Q ss_pred --CCCCCHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecC--cccC
Q 001380 220 --NLKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKE--IGSV 289 (1089)
Q Consensus 220 --~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~d--l~el 289 (1089)
...-.|+--.++.+.+.-.-+.+.|+||+.||..|-+.|. ++|..|.+..+.....+|+++.+ |..+
T Consensus 724 ~V~ar~sP~~K~~iV~~lq~~g~~Vam~GDGvNDapaLk~Ad---VGIAmg~~gt~vak~aADivl~dd~f~~I 794 (1053)
T TIGR01523 724 LVIARCAPQTKVKMIEALHRRKAFCAMTGDGVNDSPSLKMAN---VGIAMGINGSDVAKDASDIVLSDDNFASI 794 (1053)
T ss_pred eEEEecCHHHHHHHHHHHHhcCCeeEEeCCCcchHHHHHhCC---ccEecCCCccHHHHHhcCEEEecCCHHHH
Confidence 1233444444555555444567999999999999999998 55655532223334468888755 5555
No 475
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=96.59 E-value=1.5 Score=49.37 Aligned_cols=155 Identities=15% Similarity=0.172 Sum_probs=96.9
Q ss_pred eeEEEecCCCEEEEEECCCcEEEEE-ECCCCeEEEEeCC-CccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCe
Q 001380 719 WDVCYKPINEKVYIAMAGQHQIWEH-STVDGVTRAFSGD-GYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSS 796 (1089)
Q Consensus 719 ~~la~~~~g~~lyvad~~~~~I~~~-~~~~g~~~~~~g~-g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~ 796 (1089)
.++.++|.|+++..++. ..-|.| |..+|........ +. -..-+.++++||| .||.+-..++.
T Consensus 307 ~~ls~h~tgeYllsAs~--d~~w~Fsd~~~g~~lt~vs~~~s-------------~v~~ts~~fHpDg-Lifgtgt~d~~ 370 (506)
T KOG0289|consen 307 TGLSLHPTGEYLLSASN--DGTWAFSDISSGSQLTVVSDETS-------------DVEYTSAAFHPDG-LIFGTGTPDGV 370 (506)
T ss_pred eeeeeccCCcEEEEecC--CceEEEEEccCCcEEEEEeeccc-------------cceeEEeeEcCCc-eEEeccCCCce
Confidence 67889999876666543 444444 4455543333211 10 0124578999999 99999999999
Q ss_pred EEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccCCcEEEEeCCCCEEEEEeCCC-CeEEEEec
Q 001380 797 IRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPAS-NRVSTLAG 875 (1089)
Q Consensus 797 I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~lyVaD~~n~~I~~~d~~~-~~v~t~~g 875 (1089)
|+.++++.+. +.-.|+...| --..|.++.+|...++....+.|+-+|... ....++.-
T Consensus 371 vkiwdlks~~-------------~~a~Fpght~--------~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l 429 (506)
T KOG0289|consen 371 VKIWDLKSQT-------------NVAKFPGHTG--------PVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQL 429 (506)
T ss_pred EEEEEcCCcc-------------ccccCCCCCC--------ceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeec
Confidence 9999988543 2223433322 235789998998888877778899888732 22233321
Q ss_pred cCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEEEEeCCCC
Q 001380 876 IGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLDLNKE 923 (1089)
Q Consensus 876 ~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~~~~~~ 923 (1089)
. ...+-..+++|..|...+.....=+|..+...+.
T Consensus 430 ~-------------~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k 464 (506)
T KOG0289|consen 430 D-------------EKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTK 464 (506)
T ss_pred c-------------ccccceeEEEcCCCCeEEeecceeEEEEEecccc
Confidence 1 2235678899998976665544455666654444
No 476
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=96.59 E-value=0.0023 Score=55.51 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=19.0
Q ss_pred EEEEecCCCcchhhhhhhHHHH
Q 001380 457 VLDFWTYCCINCMHVLPDLEFL 478 (1089)
Q Consensus 457 ll~Fwa~wC~~C~~~~p~l~~l 478 (1089)
+..||++||++|+...+.|.++
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~ 23 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL 23 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc
Confidence 4678999999999999988665
No 477
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=96.58 E-value=0.96 Score=49.46 Aligned_cols=178 Identities=16% Similarity=0.188 Sum_probs=95.9
Q ss_pred ccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCccccCCCCC----CCCccccCCceEEEcCCCCEEEE
Q 001380 714 LLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSS----SLNTSFAQPSGISLSPDFMEIYV 789 (1089)
Q Consensus 714 ~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~----~~~~~~~~P~glav~~~g~~lyv 789 (1089)
.+..|.|+++++ +.||++.. .|||.+-............+ .++.-+ ...++--.-+.|++ .++ .+|+
T Consensus 47 ~F~r~MGl~~~~--~~l~~~t~--~qiw~f~~~~n~l~~~~~~~---~~D~~yvPr~~~~TGdidiHdia~-~~~-~l~f 117 (335)
T TIGR03032 47 TFPRPMGLAVSP--QSLTLGTR--YQLWRFANVDNLLPAGQTHP---GYDRLYVPRASYVTGDIDAHDLAL-GAG-RLLF 117 (335)
T ss_pred ccCccceeeeeC--CeEEEEEc--ceeEEcccccccccccccCC---CCCeEEeeeeeeeccCcchhheee-cCC-cEEE
Confidence 366899999975 57998876 78999932222221111000 011111 11122334678899 444 7888
Q ss_pred EeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccCCc-EEEEeCCCC----EEEEEe
Q 001380 790 ADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQ-IYVADSYNH----KIKKLD 864 (1089)
Q Consensus 790 ad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~-lyVaD~~n~----~I~~~d 864 (1089)
.++-=+.+..+++.-..+-.- .|..+.+.-..| =.|-.|+|+. +|+ -||+--... --+.-.
T Consensus 118 VNT~fSCLatl~~~~SF~P~W------kPpFIs~la~eD-------RCHLNGlA~~-~g~p~yVTa~~~sD~~~gWR~~~ 183 (335)
T TIGR03032 118 VNTLFSCLATVSPDYSFVPLW------KPPFISKLAPED-------RCHLNGMALD-DGEPRYVTALSQSDVADGWREGR 183 (335)
T ss_pred EECcceeEEEECCCCcccccc------CCccccccCccC-------ceeecceeee-CCeEEEEEEeeccCCcccccccc
Confidence 887778888887663332111 011111111111 1467788886 554 777642211 000011
Q ss_pred CCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEEEEeCCCC
Q 001380 865 PASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLDLNKE 923 (1089)
Q Consensus 865 ~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~~~~~~ 923 (1089)
.++|.+--+... ......|..|.+-... +|+||++|+..++|..++++++
T Consensus 184 ~~gG~vidv~s~--------evl~~GLsmPhSPRWh-dgrLwvldsgtGev~~vD~~~G 233 (335)
T TIGR03032 184 RDGGCVIDIPSG--------EVVASGLSMPHSPRWY-QGKLWLLNSGRGELGYVDPQAG 233 (335)
T ss_pred cCCeEEEEeCCC--------CEEEcCccCCcCCcEe-CCeEEEEECCCCEEEEEcCCCC
Confidence 122222222110 0011247788888876 6899999999999999999843
No 478
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=96.57 E-value=1.6 Score=49.85 Aligned_cols=150 Identities=15% Similarity=0.153 Sum_probs=89.1
Q ss_pred CCCceEEEeecCCeEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCE
Q 001380 601 KFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHA 680 (1089)
Q Consensus 601 ~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~ 680 (1089)
++...+++.+ +|.+.-.|+ ++.|.+++..+..+..-.....+ .-.+|+...+|. | ++.....+
T Consensus 247 k~Vl~v~F~e-ngdviTgDS-~G~i~Iw~~~~~~~~k~~~aH~g-------------gv~~L~~lr~Gt-l-lSGgKDRk 309 (626)
T KOG2106|consen 247 KFVLCVTFLE-NGDVITGDS-GGNILIWSKGTNRISKQVHAHDG-------------GVFSLCMLRDGT-L-LSGGKDRK 309 (626)
T ss_pred eEEEEEEEcC-CCCEEeecC-CceEEEEeCCCceEEeEeeecCC-------------ceEEEEEecCcc-E-eecCccce
Confidence 5666788886 888888887 47899999887655422112122 235677777776 3 33555667
Q ss_pred EEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCccc
Q 001380 681 LREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYER 760 (1089)
Q Consensus 681 I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~ 760 (1089)
|..+|- ..+++...-.. .....++-|+ +.++.|||....|. |..=+.+++......|.+.
T Consensus 310 i~~Wd~---~y~k~r~~elP------------e~~G~iRtv~--e~~~di~vGTtrN~-iL~Gt~~~~f~~~v~gh~d-- 369 (626)
T KOG2106|consen 310 IILWDD---NYRKLRETELP------------EQFGPIRTVA--EGKGDILVGTTRNF-ILQGTLENGFTLTVQGHGD-- 369 (626)
T ss_pred EEeccc---cccccccccCc------------hhcCCeeEEe--cCCCcEEEeeccce-EEEeeecCCceEEEEeccc--
Confidence 776662 22222211100 0011233333 23335888776554 4444455665555555542
Q ss_pred cCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEE
Q 001380 761 NLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALN 801 (1089)
Q Consensus 761 ~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~ 801 (1089)
+-.|+|.+|+. .+|++......++.++
T Consensus 370 -------------elwgla~hps~-~q~~T~gqdk~v~lW~ 396 (626)
T KOG2106|consen 370 -------------ELWGLATHPSK-NQLLTCGQDKHVRLWN 396 (626)
T ss_pred -------------ceeeEEcCCCh-hheeeccCcceEEEcc
Confidence 45799999986 8999988888888887
No 479
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=96.56 E-value=0.094 Score=56.96 Aligned_cols=123 Identities=15% Similarity=0.285 Sum_probs=88.8
Q ss_pred cCCcceeEEeeCCCEEEEEECCCCEEEEEECCCCeEEEE-ecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEE
Q 001380 656 FNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTL-AGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAM 734 (1089)
Q Consensus 656 f~~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~v~~~-ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad 734 (1089)
+.+...++++|- |..|.+......|..+|+.+|.+..- .|. +..-.+|+|++.-.+||-+.
T Consensus 151 lgWVr~vavdP~-n~wf~tgs~DrtikIwDlatg~LkltltGh-----------------i~~vr~vavS~rHpYlFs~g 212 (460)
T KOG0285|consen 151 LGWVRSVAVDPG-NEWFATGSADRTIKIWDLATGQLKLTLTGH-----------------IETVRGVAVSKRHPYLFSAG 212 (460)
T ss_pred cceEEEEeeCCC-ceeEEecCCCceeEEEEcccCeEEEeecch-----------------hheeeeeeecccCceEEEec
Confidence 457789999986 54777777788999999999887654 322 34678999998776666553
Q ss_pred CCCcEEEEEECCCCeE-EEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCC-eEEEec
Q 001380 735 AGQHQIWEHSTVDGVT-RAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGG-SRLLAG 812 (1089)
Q Consensus 735 ~~~~~I~~~~~~~g~~-~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~-~~~~~g 812 (1089)
...+|..||++..++ +.+-| .+..-..|++.|.- .+.++....+.+|++|..+.. +.++.|
T Consensus 213 -edk~VKCwDLe~nkvIR~YhG---------------HlS~V~~L~lhPTl-dvl~t~grDst~RvWDiRtr~~V~~l~G 275 (460)
T KOG0285|consen 213 -EDKQVKCWDLEYNKVIRHYHG---------------HLSGVYCLDLHPTL-DVLVTGGRDSTIRVWDIRTRASVHVLSG 275 (460)
T ss_pred -CCCeeEEEechhhhhHHHhcc---------------ccceeEEEeccccc-eeEEecCCcceEEEeeecccceEEEecC
Confidence 468999999986643 33432 23345678888876 777888888899999988654 445555
Q ss_pred C
Q 001380 813 G 813 (1089)
Q Consensus 813 ~ 813 (1089)
.
T Consensus 276 H 276 (460)
T KOG0285|consen 276 H 276 (460)
T ss_pred C
Confidence 4
No 480
>PLN02382 probable sucrose-phosphatase
Probab=96.55 E-value=0.012 Score=68.82 Aligned_cols=56 Identities=13% Similarity=0.055 Sum_probs=44.7
Q ss_pred cCCCCCHHHHHHHHHHc---CCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhh
Q 001380 219 ENLKPAPDIFLSASKIL---NVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKE 276 (1089)
Q Consensus 219 ~~~KP~~~~~~~~l~~l---gv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~ 276 (1089)
..+--|...++.+++++ |+++++++++||+.||++|-+.+|...+.+ +...+++++
T Consensus 171 p~g~sKg~Al~~L~~~~~~~gi~~~~~iafGDs~NDleMl~~ag~~gvam--~NA~~elk~ 229 (413)
T PLN02382 171 PQGAGKGQALAYLLKKLKAEGKAPVNTLVCGDSGNDAELFSVPDVYGVMV--SNAQEELLQ 229 (413)
T ss_pred eCCCCHHHHHHHHHHHhhhcCCChhcEEEEeCCHHHHHHHhcCCCCEEEE--cCCcHHHHH
Confidence 34556778999999999 999999999999999999999999655555 334555554
No 481
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=96.54 E-value=1.3 Score=46.80 Aligned_cols=197 Identities=15% Similarity=0.156 Sum_probs=118.8
Q ss_pred CcceeEEeeC-CCEEEEEECCCCEEEEEECCC-C--eEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEE
Q 001380 658 RPQGLAYNAK-KNLLYVADTENHALREIDFVN-D--TVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIA 733 (1089)
Q Consensus 658 ~P~gla~d~~-g~~lyVaD~~n~~I~~~d~~~-g--~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyva 733 (1089)
+-..+|++|. |. ++-+-....+||.++..+ . ..+++...+ .-.+-+.+|++|.|..| .+
T Consensus 16 r~W~~awhp~~g~-ilAscg~Dk~vriw~~~~~~s~~ck~vld~~---------------hkrsVRsvAwsp~g~~L-a~ 78 (312)
T KOG0645|consen 16 RVWSVAWHPGKGV-ILASCGTDKAVRIWSTSSGDSWTCKTVLDDG---------------HKRSVRSVAWSPHGRYL-AS 78 (312)
T ss_pred cEEEEEeccCCce-EEEeecCCceEEEEecCCCCcEEEEEecccc---------------chheeeeeeecCCCcEE-EE
Confidence 5578999987 66 666666788999999763 2 222222111 11367889999999533 33
Q ss_pred ECCCcEEEEEECCCC---eEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCC-eEE
Q 001380 734 MAGQHQIWEHSTVDG---VTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGG-SRL 809 (1089)
Q Consensus 734 d~~~~~I~~~~~~~g---~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~-~~~ 809 (1089)
-.....+..+-..++ .+..+.|..+ .--+++++.+| ++..+.+...+|.....+.+. ...
T Consensus 79 aSFD~t~~Iw~k~~~efecv~~lEGHEn---------------EVK~Vaws~sG-~~LATCSRDKSVWiWe~deddEfec 142 (312)
T KOG0645|consen 79 ASFDATVVIWKKEDGEFECVATLEGHEN---------------EVKCVAWSASG-NYLATCSRDKSVWIWEIDEDDEFEC 142 (312)
T ss_pred eeccceEEEeecCCCceeEEeeeecccc---------------ceeEEEEcCCC-CEEEEeeCCCeEEEEEecCCCcEEE
Confidence 333334434433333 2344444433 23489999998 555666666777776655322 222
Q ss_pred EecCCCCCCCCccccCCCCCccccccccCceEEEEccCCcEEEEeCCCCEEEEEeCC-CC---eEEEEeccCCCCCCCCc
Q 001380 810 LAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPA-SN---RVSTLAGIGKAGFKDGA 885 (1089)
Q Consensus 810 ~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~lyVaD~~n~~I~~~d~~-~~---~v~t~~g~g~~g~~~g~ 885 (1089)
.+- -+...|--..|.+-|.-.|+++-+|.+.|+.++-. ++ .+.++.|.
T Consensus 143 ~aV-------------------L~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~--------- 194 (312)
T KOG0645|consen 143 IAV-------------------LQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGH--------- 194 (312)
T ss_pred Eee-------------------eccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCc---------
Confidence 111 01113456678888887899999999999988654 33 24455432
Q ss_pred ccccccCCCceEEEccCCcEEEEECCCCEEEEEeC
Q 001380 886 ALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLDL 920 (1089)
Q Consensus 886 ~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~~~ 920 (1089)
-+--.++++++.|.-.++-+....+++..+
T Consensus 195 -----~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~ 224 (312)
T KOG0645|consen 195 -----ENTVWSLAFDNIGSRLVSCSDDGTVSIWRL 224 (312)
T ss_pred -----cceEEEEEecCCCceEEEecCCcceEeeee
Confidence 123567888888876677666676666653
No 482
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=96.53 E-value=0.0091 Score=76.63 Aligned_cols=115 Identities=13% Similarity=0.152 Sum_probs=81.0
Q ss_pred CCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCcc----------------CCCCCHHH
Q 001380 164 GIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFE----------------NLKPAPDI 227 (1089)
Q Consensus 164 ~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~----------------~~KP~~~~ 227 (1089)
.++.|++.+.+++|++.|+++.++|+.+...+..+.+++|+. . +.++++.+.. ...-.|+-
T Consensus 514 Dp~R~~~~~aI~~l~~aGI~vvmiTGD~~~tA~aIA~~lGI~-~--~~v~~g~~l~~~~~~el~~~~~~~~vfAr~~Pe~ 590 (867)
T TIGR01524 514 DPPKESTKEAIAALFKNGINVKVLTGDNEIVTARICQEVGID-A--NDFLLGADIEELSDEELARELRKYHIFARLTPMQ 590 (867)
T ss_pred CCCchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCC-C--CCeeecHhhhhCCHHHHHHHhhhCeEEEECCHHH
Confidence 367899999999999999999999999999999999999995 2 2333332221 11233444
Q ss_pred HHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecC
Q 001380 228 FLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKE 285 (1089)
Q Consensus 228 ~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~d 285 (1089)
-.++.+.+.-.-+.+.|+||+.||..+.+.|. ++|..|. ..+.....+|.|+-+
T Consensus 591 K~~iV~~lq~~G~vVam~GDGvNDapALk~Ad---VGIAmg~-gtdvAk~aADiVLld 644 (867)
T TIGR01524 591 KSRIIGLLKKAGHTVGFLGDGINDAPALRKAD---VGISVDT-AADIAKEASDIILLE 644 (867)
T ss_pred HHHHHHHHHhCCCEEEEECCCcccHHHHHhCC---EEEEeCC-ccHHHHHhCCEEEec
Confidence 44445544444467999999999999999999 5555552 233434457777643
No 483
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=96.50 E-value=0.008 Score=77.26 Aligned_cols=119 Identities=16% Similarity=0.146 Sum_probs=85.2
Q ss_pred CCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCcc----------------CCCCCHHH
Q 001380 164 GIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFE----------------NLKPAPDI 227 (1089)
Q Consensus 164 ~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~----------------~~KP~~~~ 227 (1089)
.++.|++.+.+++|+++|+++.++|+.+...+..+.+++|+. . +.++++.+.. ...-.|+-
T Consensus 549 Dp~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~aIA~~lGI~-~--~~vi~G~el~~~~~~el~~~v~~~~VfAr~sPe~ 625 (903)
T PRK15122 549 DPPKESAAPAIAALRENGVAVKVLTGDNPIVTAKICREVGLE-P--GEPLLGTEIEAMDDAALAREVEERTVFAKLTPLQ 625 (903)
T ss_pred CccHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCC-C--CCccchHhhhhCCHHHHHHHhhhCCEEEEeCHHH
Confidence 367899999999999999999999999999999999999995 2 2344443322 12334455
Q ss_pred HHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEe--cCcccC
Q 001380 228 FLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIR--KEIGSV 289 (1089)
Q Consensus 228 ~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi--~dl~el 289 (1089)
-.++.+.+.-.-+-+.|+||+.||..|.+.|. |+|..|. ..+.....+|.|+ ++|..+
T Consensus 626 K~~iV~~Lq~~G~vVamtGDGvNDaPALk~AD---VGIAmg~-gtdvAkeaADiVLldd~f~~I 685 (903)
T PRK15122 626 KSRVLKALQANGHTVGFLGDGINDAPALRDAD---VGISVDS-GADIAKESADIILLEKSLMVL 685 (903)
T ss_pred HHHHHHHHHhCCCEEEEECCCchhHHHHHhCC---EEEEeCc-ccHHHHHhcCEEEecCChHHH
Confidence 55555555544567999999999999999998 5555552 2334444678776 445444
No 484
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=96.49 E-value=0.0068 Score=76.64 Aligned_cols=113 Identities=14% Similarity=0.141 Sum_probs=79.1
Q ss_pred CCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCc----------------------cCC
Q 001380 164 GIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAF----------------------ENL 221 (1089)
Q Consensus 164 ~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~----------------------~~~ 221 (1089)
.++.|++.+.++.|++.|+++.++|+.+...+..+.+++|+. .. ++++++. ...
T Consensus 441 Dp~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA~~lGI~-~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vfA 516 (755)
T TIGR01647 441 DPPRHDTKETIERARHLGVEVKMVTGDHLAIAKETARRLGLG-TN---IYTADVLLKGDNRDDLPSGELGEMVEDADGFA 516 (755)
T ss_pred CCChhhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCC-CC---CcCHHHhcCCcchhhCCHHHHHHHHHhCCEEE
Confidence 367899999999999999999999999999999999999995 31 1221111 112
Q ss_pred CCCHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEec
Q 001380 222 KPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRK 284 (1089)
Q Consensus 222 KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~ 284 (1089)
+-.|+--.++.+.+.-.-+.+.|+||+.||..+.+.|. ++|..+. ..+.....+|.|+-
T Consensus 517 r~~Pe~K~~iV~~lq~~G~~VamvGDGvNDapAL~~Ad---VGIAm~~-gtdvAkeaADivLl 575 (755)
T TIGR01647 517 EVFPEHKYEIVEILQKRGHLVGMTGDGVNDAPALKKAD---VGIAVAG-ATDAARSAADIVLT 575 (755)
T ss_pred ecCHHHHHHHHHHHHhcCCEEEEEcCCcccHHHHHhCC---eeEEecC-CcHHHHHhCCEEEE
Confidence 23344444555555545567999999999999999998 4444442 22333345776654
No 485
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=96.47 E-value=1.1 Score=47.28 Aligned_cols=242 Identities=11% Similarity=0.156 Sum_probs=146.1
Q ss_pred CCCCCceEEEeecCCeEEEEeCCCCEEEEEeCCCC-EEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECC
Q 001380 599 PLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGN-FIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTE 677 (1089)
Q Consensus 599 ~l~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~g~-~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~ 677 (1089)
.+..-..|+... +|+-..+.+-...+.+++.++. ........|.. .....++.++....++.+-.+
T Consensus 19 ~~~~v~Sv~wn~-~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~------------~svdql~w~~~~~d~~atas~ 85 (313)
T KOG1407|consen 19 HVQKVHSVAWNC-DGTKLASGSFDKTVSVWNLERDRFRKELVYRGHT------------DSVDQLCWDPKHPDLFATASG 85 (313)
T ss_pred hhhcceEEEEcc-cCceeeecccCCceEEEEecchhhhhhhcccCCC------------cchhhheeCCCCCcceEEecC
Confidence 344556788875 6766677777777888777643 33222222111 234667888776668888788
Q ss_pred CCEEEEEECCCCeE-EEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCC
Q 001380 678 NHALREIDFVNDTV-RTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGD 756 (1089)
Q Consensus 678 n~~I~~~d~~~g~v-~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~ 756 (1089)
...|+++|...++- ..+...| .-.-++++|+|+++.+.+. ...|-.+|..+..+..-.
T Consensus 86 dk~ir~wd~r~~k~~~~i~~~~------------------eni~i~wsp~g~~~~~~~k-dD~it~id~r~~~~~~~~-- 144 (313)
T KOG1407|consen 86 DKTIRIWDIRSGKCTARIETKG------------------ENINITWSPDGEYIAVGNK-DDRITFIDARTYKIVNEE-- 144 (313)
T ss_pred CceEEEEEeccCcEEEEeeccC------------------cceEEEEcCCCCEEEEecC-cccEEEEEecccceeehh--
Confidence 88999999766543 3333222 1235778888866655543 445555554433222111
Q ss_pred CccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccc
Q 001380 757 GYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLL 836 (1089)
Q Consensus 757 g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l 836 (1089)
.....-+-++++.++ .||+...+.+.|..++-.. .+.+- ..+|.=
T Consensus 145 -------------~~~~e~ne~~w~~~n-d~Fflt~GlG~v~ILsyps--Lkpv~-------------------si~AH~ 189 (313)
T KOG1407|consen 145 -------------QFKFEVNEISWNNSN-DLFFLTNGLGCVEILSYPS--LKPVQ-------------------SIKAHP 189 (313)
T ss_pred -------------cccceeeeeeecCCC-CEEEEecCCceEEEEeccc--ccccc-------------------ccccCC
Confidence 112234577888555 9999999999998887541 11110 001111
Q ss_pred cCceEEEEccCCcEEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCc-eEEEccCCcEEEEECCCCEE
Q 001380 837 QHPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPA-GIIEAQNGNLFIADTNNNII 915 (1089)
Q Consensus 837 ~~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~-gi~vd~~G~lyVad~~n~~I 915 (1089)
.....|.+||+|+-+-+.+...-+...|++--.+.+... .+..|- -|.+.-+|+++.+-+..|-|
T Consensus 190 snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~is--------------RldwpVRTlSFS~dg~~lASaSEDh~I 255 (313)
T KOG1407|consen 190 SNCICIEFDPDGRYFATGSADALVSLWDVDELICERCIS--------------RLDWPVRTLSFSHDGRMLASASEDHFI 255 (313)
T ss_pred cceEEEEECCCCceEeeccccceeeccChhHhhhheeec--------------cccCceEEEEeccCcceeeccCccceE
Confidence 346789999999877666665666667775443333321 455554 46677788877777778888
Q ss_pred EEEeCCCC
Q 001380 916 RYLDLNKE 923 (1089)
Q Consensus 916 ~~~~~~~~ 923 (1089)
-+...+++
T Consensus 256 DIA~vetG 263 (313)
T KOG1407|consen 256 DIAEVETG 263 (313)
T ss_pred EeEecccC
Confidence 88777776
No 486
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=96.47 E-value=1 Score=55.10 Aligned_cols=193 Identities=13% Similarity=0.211 Sum_probs=116.1
Q ss_pred eEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCc-ceeEEeeCCCEEEEEECCCCEEEEEECCCCeE
Q 001380 614 RLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRP-QGLAYNAKKNLLYVADTENHALREIDFVNDTV 691 (1089)
Q Consensus 614 ~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P-~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~v 691 (1089)
..|++-+.+|.|.++... ++.-..+. +|.-| ..++++.+|+ ..++....-.|..++..+...
T Consensus 67 ~~f~~~s~~~tv~~y~fps~~~~~iL~---------------Rftlp~r~~~v~g~g~-~iaagsdD~~vK~~~~~D~s~ 130 (933)
T KOG1274|consen 67 NHFLTGSEQNTVLRYKFPSGEEDTILA---------------RFTLPIRDLAVSGSGK-MIAAGSDDTAVKLLNLDDSSQ 130 (933)
T ss_pred cceEEeeccceEEEeeCCCCCccceee---------------eeeccceEEEEecCCc-EEEeecCceeEEEEeccccch
Confidence 366666677888887543 22111111 12233 6788888888 555555667888888776544
Q ss_pred EEEe-cCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCccccCCCCCCCCc
Q 001380 692 RTLA-GNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNT 770 (1089)
Q Consensus 692 ~~~a-g~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~ 770 (1089)
.... |.-. .-..|.++|.++ +......+++|..|+.+++.+....+.-...+ + .
T Consensus 131 ~~~lrgh~a-----------------pVl~l~~~p~~~-fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n--~-----~ 185 (933)
T KOG1274|consen 131 EKVLRGHDA-----------------PVLQLSYDPKGN-FLAVSSCDGKVQIWDLQDGILSKTLTGVDKDN--E-----F 185 (933)
T ss_pred heeecccCC-----------------ceeeeeEcCCCC-EEEEEecCceEEEEEcccchhhhhcccCCccc--c-----c
Confidence 4433 2111 235789999985 44555578999999999887765443211111 0 0
Q ss_pred cccC-CceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccCCc
Q 001380 771 SFAQ-PSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQ 849 (1089)
Q Consensus 771 ~~~~-P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~ 849 (1089)
-... ..-++++|+|+.+.+.-. .+.|..|+..+.... |..-+..-. +.-..++++|+|.
T Consensus 186 ~~s~i~~~~aW~Pk~g~la~~~~-d~~Vkvy~r~~we~~-------------f~Lr~~~~s------s~~~~~~wsPnG~ 245 (933)
T KOG1274|consen 186 ILSRICTRLAWHPKGGTLAVPPV-DNTVKVYSRKGWELQ-------------FKLRDKLSS------SKFSDLQWSPNGK 245 (933)
T ss_pred cccceeeeeeecCCCCeEEeecc-CCeEEEEccCCceeh-------------eeecccccc------cceEEEEEcCCCc
Confidence 0011 245789999766666554 478888888754332 111111110 1134678899998
Q ss_pred EEEEeCCCCEEEEEeCCC
Q 001380 850 IYVADSYNHKIKKLDPAS 867 (1089)
Q Consensus 850 lyVaD~~n~~I~~~d~~~ 867 (1089)
..-|-+.++.|.++|.++
T Consensus 246 YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 246 YIAASTLDGQILVWNVDT 263 (933)
T ss_pred EEeeeccCCcEEEEeccc
Confidence 777778899999998774
No 487
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=96.44 E-value=1.4 Score=46.48 Aligned_cols=198 Identities=15% Similarity=0.194 Sum_probs=119.9
Q ss_pred CcceeEEeeCCCEEEEEECCCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCC
Q 001380 658 RPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQ 737 (1089)
Q Consensus 658 ~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~ 737 (1089)
.-+.|++..+|.. ..+......+.+++.+... .....+..|. -.+-..++++|....++.+-.+.
T Consensus 22 ~v~Sv~wn~~g~~-lasgs~dktv~v~n~e~~r--~~~~~~~~gh------------~~svdql~w~~~~~d~~atas~d 86 (313)
T KOG1407|consen 22 KVHSVAWNCDGTK-LASGSFDKTVSVWNLERDR--FRKELVYRGH------------TDSVDQLCWDPKHPDLFATASGD 86 (313)
T ss_pred cceEEEEcccCce-eeecccCCceEEEEecchh--hhhhhcccCC------------CcchhhheeCCCCCcceEEecCC
Confidence 4578888888873 4444455666666665441 1111111111 01455688999888999999999
Q ss_pred cEEEEEECCCCeEEE-EeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCC
Q 001380 738 HQIWEHSTVDGVTRA-FSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPI 816 (1089)
Q Consensus 738 ~~I~~~~~~~g~~~~-~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~ 816 (1089)
..|..||...++... +...+. =.-++++|+|+++.+.+. ...|..++..+..+.. .
T Consensus 87 k~ir~wd~r~~k~~~~i~~~~e----------------ni~i~wsp~g~~~~~~~k-dD~it~id~r~~~~~~--~---- 143 (313)
T KOG1407|consen 87 KTIRIWDIRSGKCTARIETKGE----------------NINITWSPDGEYIAVGNK-DDRITFIDARTYKIVN--E---- 143 (313)
T ss_pred ceEEEEEeccCcEEEEeeccCc----------------ceEEEEcCCCCEEEEecC-cccEEEEEecccceee--h----
Confidence 999999987776543 332221 125788888866666553 4566666655322211 0
Q ss_pred CCCCccccCCCCCccccccccCceEEEEccCCcEEEEeCCCCEEEEEe-CCCCeEEEEeccCCCCCCCCcccccccCCCc
Q 001380 817 FPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLD-PASNRVSTLAGIGKAGFKDGAALAAQLSEPA 895 (1089)
Q Consensus 817 ~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~lyVaD~~n~~I~~~d-~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~ 895 (1089)
++| ...-.-+++.-++++|+..+++++|..+. |+-+.+.++.. .-.+.-
T Consensus 144 -----~~~-----------~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~A--------------H~snCi 193 (313)
T KOG1407|consen 144 -----EQF-----------KFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKA--------------HPSNCI 193 (313)
T ss_pred -----hcc-----------cceeeeeeecCCCCEEEEecCCceEEEEecccccccccccc--------------CCcceE
Confidence 000 11234567777789999999999988775 33344444432 224456
Q ss_pred eEEEccCCcEEEEECCCCEEEEEeCCCC
Q 001380 896 GIIEAQNGNLFIADTNNNIIRYLDLNKE 923 (1089)
Q Consensus 896 gi~vd~~G~lyVad~~n~~I~~~~~~~~ 923 (1089)
.|.+|++|+-+.+....-.+...+++.-
T Consensus 194 cI~f~p~GryfA~GsADAlvSLWD~~EL 221 (313)
T KOG1407|consen 194 CIEFDPDGRYFATGSADALVSLWDVDEL 221 (313)
T ss_pred EEEECCCCceEeeccccceeeccChhHh
Confidence 6778999987777666666666666553
No 488
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=96.44 E-value=0.017 Score=55.00 Aligned_cols=123 Identities=21% Similarity=0.202 Sum_probs=84.4
Q ss_pred CCCCCCCCCCccccC----CCCC-ceeecccccCCCEEEEE-EecCCCcchhh-hhhhHHHHHHHcCCCCEE-EEEEeCC
Q 001380 424 RKTTPIVPEFPAKLD----WLNT-APLQFRRDLKGKVVVLD-FWTYCCINCMH-VLPDLEFLEKKYKDMPFT-VVGVHSA 495 (1089)
Q Consensus 424 ~~~g~~~P~f~~~~~----~~~g-~~~~l~~~~~gk~vll~-Fwa~wC~~C~~-~~p~l~~l~~~~~~~~v~-vi~v~~~ 495 (1089)
..+|+++|.-++... .-.| ..++...-++||.|+|. .=+...|.|-. .+|.+.+++++++.+|+. |+-||+
T Consensus 3 ~~vg~klP~vtf~tr~~~~~~~~~~~~ts~~lf~gKkVvlf~lPGAFTPTCS~~hlPgY~~~~d~f~~kGVD~I~cVSV- 81 (165)
T COG0678 3 IMVGKKLPAVTFKTRVGDETADGWVDVTTDDLFKGKKVVLFSLPGAFTPTCSSSHLPGYLELADEFKAKGVDEIYCVSV- 81 (165)
T ss_pred cccCCcCCceEeEEeeccccCCCcccccHHHhcCCCEEEEEeCCCccCCCcccccCccHHHHHHHHHHcCCceEEEEEe-
Confidence 357888888766544 1111 12333133588876653 33668888886 899999999999987763 444443
Q ss_pred CCCChhcHHHHHHHHHHcCCc--cceeecCChhHHHHhC-----------CCceeEEEEECCCCcEEEEec
Q 001380 496 KFDNEKDLEAIRNAVLRYGIS--HPVVNDGDMNLWRELG-----------VNSWPTFAVVGPNGKLLAQLA 553 (1089)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~--~~v~~d~~~~l~~~~~-----------v~~~Pt~~lid~~G~i~~~~~ 553 (1089)
.|.-...+|.+..|.. ...+.|.+.+.-+.+| ++++....|+ .||.+...+.
T Consensus 82 -----ND~FVm~AWak~~g~~~~I~fi~Dg~geFTk~~Gm~~d~~~~g~G~RS~RYsmvV-~nGvV~~~~i 146 (165)
T COG0678 82 -----NDAFVMNAWAKSQGGEGNIKFIPDGNGEFTKAMGMLVDKSDLGFGVRSWRYSMVV-ENGVVEKLFI 146 (165)
T ss_pred -----CcHHHHHHHHHhcCCCccEEEecCCCchhhhhcCceeecccCCcceeeeeEEEEE-eCCeEEEEEe
Confidence 4566667777777766 4678899988888754 5788899999 8999877654
No 489
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=96.44 E-value=0.009 Score=64.89 Aligned_cols=71 Identities=14% Similarity=0.171 Sum_probs=48.7
Q ss_pred hHHHHHHHCCCCCCCccEEEEcC----CccCCCCCHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCC
Q 001380 194 KVDANLAAAGLPVSMFDAIVSAD----AFENLKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTT 268 (1089)
Q Consensus 194 ~~~~~l~~~gl~~~~fd~i~~~~----~~~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g 268 (1089)
.++..++..|+. ...+++.. -+...--|...++.+++++++++++++++||+.||+.|. ..+.+.|.|...
T Consensus 135 ~i~~~l~~~~l~---~~~i~s~~~~ldilP~~a~K~~Al~~L~~~~~~~~~~vl~aGDSgND~~mL-~~~~~~vvV~Na 209 (247)
T PF05116_consen 135 EIRARLRQRGLR---VNVIYSNGRDLDILPKGASKGAALRYLMERWGIPPEQVLVAGDSGNDLEML-EGGDHGVVVGNA 209 (247)
T ss_dssp HHHHHHHCCTCE---EEEEECTCCEEEEEETT-SHHHHHHHHHHHHT--GGGEEEEESSGGGHHHH-CCSSEEEE-TTS
T ss_pred HHHHHHHHcCCC---eeEEEccceeEEEccCCCCHHHHHHHHHHHhCCCHHHEEEEeCCCCcHHHH-cCcCCEEEEcCC
Confidence 355556666665 33444332 123355577899999999999999999999999999988 777788888653
No 490
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=96.43 E-value=0.61 Score=56.93 Aligned_cols=239 Identities=14% Similarity=0.106 Sum_probs=126.9
Q ss_pred ceEEEeecCCeEEEEeCCCCEEEEEeCCCC--EEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEE
Q 001380 604 GKLAIDILNNRLFISDSNHNRIVVTDLDGN--FIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHAL 681 (1089)
Q Consensus 604 ~~vavd~~~g~L~vsd~~~~~I~~~~~~g~--~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I 681 (1089)
..|++|+.+..|+++++ ++-|.+++..-- .-.+|...+. .-.+++. .++ .+++.+.++.|
T Consensus 17 t~i~~d~~gefi~tcgs-dg~ir~~~~~sd~e~P~ti~~~g~--------------~v~~ia~--~s~-~f~~~s~~~tv 78 (933)
T KOG1274|consen 17 TLICYDPDGEFICTCGS-DGDIRKWKTNSDEEEPETIDISGE--------------LVSSIAC--YSN-HFLTGSEQNTV 78 (933)
T ss_pred EEEEEcCCCCEEEEecC-CCceEEeecCCcccCCchhhccCc--------------eeEEEee--ccc-ceEEeeccceE
Confidence 35788886666666665 355666543211 1111110100 1244444 344 57777788888
Q ss_pred EEEECCCCeEEEEecCCCCCCCCCCCCcccccccC-CceeEEEecCCCEEEEEECCCcEEEEEECCCC-eEEEEeCCCcc
Q 001380 682 REIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLN-SPWDVCYKPINEKVYIAMAGQHQIWEHSTVDG-VTRAFSGDGYE 759 (1089)
Q Consensus 682 ~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~-~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g-~~~~~~g~g~~ 759 (1089)
.++...++.-.++.. .+. -..+++|+-+|+ ..++....-.|...+..+. ....+.|..
T Consensus 79 ~~y~fps~~~~~iL~-----------------Rftlp~r~~~v~g~g~-~iaagsdD~~vK~~~~~D~s~~~~lrgh~-- 138 (933)
T KOG1274|consen 79 LRYKFPSGEEDTILA-----------------RFTLPIRDLAVSGSGK-MIAAGSDDTAVKLLNLDDSSQEKVLRGHD-- 138 (933)
T ss_pred EEeeCCCCCccceee-----------------eeeccceEEEEecCCc-EEEeecCceeEEEEeccccchheeecccC--
Confidence 888876554443321 111 236889988774 3344333445656665543 333343321
Q ss_pred ccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCc
Q 001380 760 RNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHP 839 (1089)
Q Consensus 760 ~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P 839 (1089)
+.-.+|.++|.+ .+.+.-+.+|.|+.++.+++......++ ++..-+.. +..+
T Consensus 139 -------------apVl~l~~~p~~-~fLAvss~dG~v~iw~~~~~~~~~tl~~-------v~k~n~~~-------~s~i 190 (933)
T KOG1274|consen 139 -------------APVLQLSYDPKG-NFLAVSSCDGKVQIWDLQDGILSKTLTG-------VDKDNEFI-------LSRI 190 (933)
T ss_pred -------------CceeeeeEcCCC-CEEEEEecCceEEEEEcccchhhhhccc-------CCcccccc-------ccce
Confidence 234589999998 5666666789999999987765432222 11111100 1122
Q ss_pred -eEEEEccCC-cEEEEeCCCCEEEEEeCCCCeEEEE-eccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEE
Q 001380 840 -LGVYCAKNG-QIYVADSYNHKIKKLDPASNRVSTL-AGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIR 916 (1089)
Q Consensus 840 -~gva~~~~G-~lyVaD~~n~~I~~~d~~~~~v~t~-~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~ 916 (1089)
.-++|.|+| .+.+.- -.+.|+.|++.+....-. -+.-.. +.-..+..+++|.-+.|.+-++.|.
T Consensus 191 ~~~~aW~Pk~g~la~~~-~d~~Vkvy~r~~we~~f~Lr~~~~s------------s~~~~~~wsPnG~YiAAs~~~g~I~ 257 (933)
T KOG1274|consen 191 CTRLAWHPKGGTLAVPP-VDNTVKVYSRKGWELQFKLRDKLSS------------SKFSDLQWSPNGKYIAASTLDGQIL 257 (933)
T ss_pred eeeeeecCCCCeEEeec-cCCeEEEEccCCceeheeecccccc------------cceEEEEEcCCCcEEeeeccCCcEE
Confidence 335788884 555554 457899999877654322 111000 0023444556665444555556666
Q ss_pred EEeCC
Q 001380 917 YLDLN 921 (1089)
Q Consensus 917 ~~~~~ 921 (1089)
+++.+
T Consensus 258 vWnv~ 262 (933)
T KOG1274|consen 258 VWNVD 262 (933)
T ss_pred EEecc
Confidence 66555
No 491
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=96.41 E-value=0.84 Score=46.59 Aligned_cols=243 Identities=13% Similarity=0.090 Sum_probs=0.0
Q ss_pred ceeEEeeCCCEEEEEECCCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcE
Q 001380 660 QGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQ 739 (1089)
Q Consensus 660 ~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~ 739 (1089)
..+++.|.|. ||.........|..-. -..+..-.+.-....+..---.-..-.-.+.+-.+|+|.| .|..+..+...
T Consensus 36 rav~fhp~g~-lyavgsnskt~ric~y-p~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~g-eliatgsndk~ 112 (350)
T KOG0641|consen 36 RAVAFHPAGG-LYAVGSNSKTFRICAY-PALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCG-ELIATGSNDKT 112 (350)
T ss_pred eeEEecCCCc-eEEeccCCceEEEEcc-ccccCcccccccccCCCeEEeeeccccCccEEEEEecCcc-CeEEecCCCce
Q ss_pred EEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCc----eEEEcCCCC-EEEEEeCCCC-eEEEEEcCCCCeEEEecC
Q 001380 740 IWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPS----GISLSPDFM-EIYVADSESS-SIRALNLKTGGSRLLAGG 813 (1089)
Q Consensus 740 I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~----glav~~~g~-~lyvad~~~~-~I~~~~~~~~~~~~~~g~ 813 (1089)
|..+.....++....-.-...-.+|....-+.+..|. =|+-...|+ +||++|.+.+ -...++-.+|-+..+
T Consensus 113 ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilal--- 189 (350)
T KOG0641|consen 113 IKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILAL--- 189 (350)
T ss_pred EEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEE---
Q ss_pred CCCCCCCccccCCCCCccccccccCce--------------------EEEEccCCcEEEEeCCCCEEEEEeCCCCeEEEE
Q 001380 814 DPIFPDNLFKFGDRDGMGSEVLLQHPL--------------------GVYCAKNGQIYVADSYNHKIKKLDPASNRVSTL 873 (1089)
Q Consensus 814 ~~~~~~~l~~~g~~dg~~~~~~l~~P~--------------------gva~~~~G~lyVaD~~n~~I~~~d~~~~~v~t~ 873 (1089)
..+....|.-|..|.......|..|. .|++||.|+++++......-..+|..++....-
T Consensus 190 -yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~ 268 (350)
T KOG0641|consen 190 -YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQR 268 (350)
T ss_pred -EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeee
Q ss_pred eccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEEEEeCCC
Q 001380 874 AGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLDLNK 922 (1089)
Q Consensus 874 ~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~~~~~ 922 (1089)
.-. .-..-..+.+.+.-....+.+....|+.-++.+
T Consensus 269 f~p-------------hsadir~vrfsp~a~yllt~syd~~ikltdlqg 304 (350)
T KOG0641|consen 269 FHP-------------HSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQG 304 (350)
T ss_pred eCC-------------CccceeEEEeCCCceEEEEecccceEEEeeccc
No 492
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=96.38 E-value=0.053 Score=52.82 Aligned_cols=115 Identities=12% Similarity=0.129 Sum_probs=80.2
Q ss_pred cccCCCEEEEEEecCCCcchhhhhhhHHHHHHH-cCCCCEEEEEEeCCCCCChh----cHHHHHHHHHHcC--Cccc-ee
Q 001380 449 RDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKK-YKDMPFTVVGVHSAKFDNEK----DLEAIRNAVLRYG--ISHP-VV 520 (1089)
Q Consensus 449 ~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~-~~~~~v~vi~v~~~~~~~~~----~~~~~~~~~~~~~--~~~~-v~ 520 (1089)
..+.||+-||...|---..-..-.|.+..+.+. |+.......+|- +.++ +--=++..+++.. .+|. ++
T Consensus 33 ~~l~GKVrviq~iAGr~sake~N~~l~~aik~a~f~~d~yqtttIi----N~dDAi~gt~~fVrss~e~~kk~~p~s~~v 108 (160)
T PF09695_consen 33 AQLPGKVRVIQHIAGRSSAKEMNAPLIEAIKAAKFPHDKYQTTTII----NLDDAIWGTGGFVRSSAEDSKKEFPWSQFV 108 (160)
T ss_pred cccCCCEEEEEEeccCCchhHhhHHHHHHHHHcCCCccceeEEEEE----ecccccccchHHHHHHHHHhhhhCCCcEEE
Confidence 678999988888765444333344555556555 665556666663 2222 2233455555544 5664 67
Q ss_pred ecCChhHHHHhCCCc-eeEEEEECCCCcEEEEecCCCchhhHHHHHHH
Q 001380 521 NDGDMNLWRELGVNS-WPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEA 567 (1089)
Q Consensus 521 ~d~~~~l~~~~~v~~-~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~ 567 (1089)
.|.++.+.+.|+... --..+++|++|++++...|..+.++++++|.-
T Consensus 109 lD~~G~~~~aW~L~~~~SaiiVlDK~G~V~F~k~G~Ls~~Ev~qVi~L 156 (160)
T PF09695_consen 109 LDSNGVVRKAWQLQEESSAIIVLDKQGKVQFVKEGALSPAEVQQVIAL 156 (160)
T ss_pred EcCCCceeccccCCCCCceEEEEcCCccEEEEECCCCCHHHHHHHHHH
Confidence 899999999998753 35688999999999999999999999888764
No 493
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=96.37 E-value=0.013 Score=74.21 Aligned_cols=69 Identities=13% Similarity=0.004 Sum_probs=49.5
Q ss_pred CCCCHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccCCHHHHHhcc
Q 001380 221 LKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDILTGG 298 (1089)
Q Consensus 221 ~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~i~~ll~~~ 298 (1089)
+--|...++.+++ +++++.++++||+.||+.|.+.++...+.|..|. ....+++++.+..++ ..+|..+
T Consensus 655 ~vnKG~al~~ll~--~~~~d~vl~~GD~~nDe~Mf~~~~~~~~~v~vG~-----~~s~A~~~l~~~~eV--~~~L~~l 723 (726)
T PRK14501 655 GVNKGRAVRRLLE--AGPYDFVLAIGDDTTDEDMFRALPETAITVKVGP-----GESRARYRLPSQREV--RELLRRL 723 (726)
T ss_pred CCCHHHHHHHHHh--cCCCCEEEEECCCCChHHHHHhcccCceEEEECC-----CCCcceEeCCCHHHH--HHHHHHH
Confidence 3445666777777 6778999999999999999998753334444443 234688999988774 6676654
No 494
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=96.28 E-value=0.028 Score=57.66 Aligned_cols=41 Identities=32% Similarity=0.526 Sum_probs=34.2
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEe
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVH 493 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~ 493 (1089)
.+++.|+.|+.+.||+|....+.+.++.+++++ ++.+.-++
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~-~v~~~~~~ 54 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPK-DVKFEKVP 54 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCC-CceEEEcC
Confidence 689999999999999999999999999999854 35554444
No 495
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=96.26 E-value=0.031 Score=59.05 Aligned_cols=44 Identities=20% Similarity=0.443 Sum_probs=33.7
Q ss_pred ccCCCEEEEEEecCCCcchhhhhhhH---HHHHHHcCCCCEEEEEEeC
Q 001380 450 DLKGKVVVLDFWTYCCINCMHVLPDL---EFLEKKYKDMPFTVVGVHS 494 (1089)
Q Consensus 450 ~~~gk~vll~Fwa~wC~~C~~~~p~l---~~l~~~~~~~~v~vi~v~~ 494 (1089)
...|++.|+.|+..-||+|.+..+.+ ..+.+.+.+. +.++-+++
T Consensus 34 p~~~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~-v~~~~~~~ 80 (207)
T PRK10954 34 PVAGEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEG-TKMTKYHV 80 (207)
T ss_pred cCCCCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCC-CeEEEecc
Confidence 44678889999999999999988866 7778887653 55555554
No 496
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=96.25 E-value=0.018 Score=74.14 Aligned_cols=118 Identities=12% Similarity=0.123 Sum_probs=82.6
Q ss_pred CCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCc-cEEEEcCCccC----------------CCCCHH
Q 001380 164 GIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMF-DAIVSADAFEN----------------LKPAPD 226 (1089)
Q Consensus 164 ~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~f-d~i~~~~~~~~----------------~KP~~~ 226 (1089)
.++.+++++.++.|+++|+++.++|+.+...+..+.+++|+..+.. +.++.+.+... .+-.|+
T Consensus 546 Dppr~~v~~aI~~l~~AGI~v~MiTGD~~~TA~aIa~~~Gi~~~~~~~~vi~G~el~~l~~~el~~~~~~~~VfARvsP~ 625 (917)
T COG0474 546 DPPREDVKEAIEELREAGIKVWMITGDHVETAIAIAKECGIEAEAESALVIDGAELDALSDEELAELVEELSVFARVSPE 625 (917)
T ss_pred CCCCccHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHcCCCCCCCceeEeehHHhhhcCHHHHHHHhhhCcEEEEcCHH
Confidence 4789999999999999999999999999999999999999862222 33555544321 233444
Q ss_pred HHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEec
Q 001380 227 IFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRK 284 (1089)
Q Consensus 227 ~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~ 284 (1089)
--.++.+.+.-.-+-+.|+||+.||.-|-+.|. |+|..|.+-.+.....+|.+.-
T Consensus 626 qK~~IV~~lq~~g~vVamtGDGvNDapALk~AD---VGIamg~~Gtdaak~Aadivl~ 680 (917)
T COG0474 626 QKARIVEALQKSGHVVAMTGDGVNDAPALKAAD---VGIAMGGEGTDAAKEAADIVLL 680 (917)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCchhHHHHHhcC---ccEEecccHHHHHHhhcceEee
Confidence 445555555545566999999999999999999 5554443222222223555543
No 497
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.25 E-value=3.4 Score=50.74 Aligned_cols=169 Identities=12% Similarity=0.050 Sum_probs=87.4
Q ss_pred CCcceeEEeeCCCEEEEEEC-------CCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCE
Q 001380 657 NRPQGLAYNAKKNLLYVADT-------ENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEK 729 (1089)
Q Consensus 657 ~~P~gla~d~~g~~lyVaD~-------~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~ 729 (1089)
..+...+++++|+.+.+..+ ....|+.++..+.. +.+. .|. .-..-.|+|+|+.
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~-~~lt-~g~-----------------~~t~PsWspDG~~ 410 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA-VQVL-EGH-----------------SLTRPSWSLDADA 410 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc-eeee-cCC-----------------CCCCceECCCCCc
Confidence 36788899999975544431 23467777753333 3332 111 1122358888878
Q ss_pred EEEEECCCcEEEEEEC-CCCeEEEEeCCCccccCCCCCCCCccc-cCCceEEEcCCCCEEEEEeCCCCeEEE---EEcCC
Q 001380 730 VYIAMAGQHQIWEHST-VDGVTRAFSGDGYERNLNGSSSLNTSF-AQPSGISLSPDFMEIYVADSESSSIRA---LNLKT 804 (1089)
Q Consensus 730 lyvad~~~~~I~~~~~-~~g~~~~~~g~g~~~~~~g~~~~~~~~-~~P~glav~~~g~~lyvad~~~~~I~~---~~~~~ 804 (1089)
||+...++.-++..+. .++.+....-.+.+.. . .+ ...+.+.+++||.+|.+.-. ++|+. ....+
T Consensus 411 lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~-------~-~~~g~Issl~wSpDG~RiA~i~~--g~v~Va~Vvr~~~ 480 (591)
T PRK13616 411 VWVVVDGNTVVRVIRDPATGQLARTPVDASAVA-------S-RVPGPISELQLSRDGVRAAMIIG--GKVYLAVVEQTED 480 (591)
T ss_pred eEEEecCcceEEEeccCCCceEEEEeccCchhh-------h-ccCCCcCeEEECCCCCEEEEEEC--CEEEEEEEEeCCC
Confidence 8887654332322221 1233332221111110 0 11 24789999999988866542 46665 45444
Q ss_pred CCeEEEecCCCCCCCCccccCCCCCcccccccc-CceEEEEccCCcEEEEeC-CCCEEEEEeCCCCeEE
Q 001380 805 GGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQ-HPLGVYCAKNGQIYVADS-YNHKIKKLDPASNRVS 871 (1089)
Q Consensus 805 ~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~-~P~gva~~~~G~lyVaD~-~n~~I~~~d~~~~~v~ 871 (1089)
|. ..+..- ...+ ..+. .+..+.+..++.|+|... .+..+..++.++...+
T Consensus 481 G~-~~l~~~--------~~l~--------~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~ 532 (591)
T PRK13616 481 GQ-YALTNP--------REVG--------PGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSD 532 (591)
T ss_pred Cc-eeeccc--------EEee--------cccCCccccceEecCCEEEEEecCCCCceEEEecCCcccc
Confidence 44 222100 0000 0122 246688888888887644 3456788877654433
No 498
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=96.21 E-value=1.2 Score=47.89 Aligned_cols=225 Identities=19% Similarity=0.256 Sum_probs=113.8
Q ss_pred CCeEEEEeCCCCEEEEEeCCC-CEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEEEEECCCCe
Q 001380 612 NNRLFISDSNHNRIVVTDLDG-NFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNDT 690 (1089)
Q Consensus 612 ~g~L~vsd~~~~~I~~~~~~g-~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~ 690 (1089)
++..|++|-.++ +.++|-.. ..-+.++.....| .-.|+.+ .|+..||+|..+. +..+|..+-.
T Consensus 96 e~yvyvad~ssG-L~IvDIS~P~sP~~~~~lnt~g------------yaygv~v--sGn~aYVadlddg-fLivdvsdps 159 (370)
T COG5276 96 EEYVYVADWSSG-LRIVDISTPDSPTLIGFLNTDG------------YAYGVYV--SGNYAYVADLDDG-FLIVDVSDPS 159 (370)
T ss_pred ccEEEEEcCCCc-eEEEeccCCCCcceeccccCCc------------eEEEEEe--cCCEEEEeeccCc-EEEEECCCCC
Confidence 678999996544 44454321 1112222221111 2356666 5899999998554 5567776655
Q ss_pred EEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCccccCCCCCCCCc
Q 001380 691 VRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNT 770 (1089)
Q Consensus 691 v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~ 770 (1089)
--+++|...... ...|+++++ |++-|++....+ +...|-.+-..-.|.++-+.+
T Consensus 160 sP~lagrya~~~-------------~d~~~v~IS--Gn~AYvA~~d~G-L~ivDVSnp~sPvli~~~n~g---------- 213 (370)
T COG5276 160 SPQLAGRYALPG-------------GDTHDVAIS--GNYAYVAWRDGG-LTIVDVSNPHSPVLIGSYNTG---------- 213 (370)
T ss_pred CceeeeeeccCC-------------CCceeEEEe--cCeEEEEEeCCC-eEEEEccCCCCCeEEEEEecC----------
Confidence 555554432211 123889997 789999987654 333443333222232211000
Q ss_pred cccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEE---EEccC
Q 001380 771 SFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGV---YCAKN 847 (1089)
Q Consensus 771 ~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gv---a~~~~ 847 (1089)
..-+++.+++ ++.|+++...+ +..++.++-..-++ ||..+ -+.|.++ .+ ++
T Consensus 214 --~g~~sv~vsd--nr~y~vvy~eg-vlivd~s~~ssp~~-------------~gsye-------t~~p~~~s~v~V-s~ 267 (370)
T COG5276 214 --PGTYSVSVSD--NRAYLVVYDEG-VLIVDVSGPSSPTV-------------FGSYE-------TSNPVSISTVPV-SG 267 (370)
T ss_pred --CceEEEEecC--CeeEEEEcccc-eEEEecCCCCCceE-------------eeccc-------cCCcccccceec-cc
Confidence 0233455554 38898886644 45555543222122 22221 1245444 44 35
Q ss_pred CcEEEEeCCCCEEEEEeCCCCeEEEEeccC-CCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEEE
Q 001380 848 GQIYVADSYNHKIKKLDPASNRVSTLAGIG-KAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRY 917 (1089)
Q Consensus 848 G~lyVaD~~n~~I~~~d~~~~~v~t~~g~g-~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~ 917 (1089)
...||+|.. +-+..+|..+..-.++.+.- .+| ..-.||... ++-+|++|.++..|.-
T Consensus 268 ~~~Yvadga-~gl~~idisnp~spfl~ss~~t~g-----------~~a~gi~ay-~~y~yiadkn~g~vV~ 325 (370)
T COG5276 268 EYAYVADGA-KGLPIIDISNPPSPFLSSSLDTAG-----------YQAAGIRAY-GNYNYIADKNTGAVVD 325 (370)
T ss_pred ceeeeeccc-cCceeEeccCCCCCchhccccCCC-----------ccccceEEe-cCeeEeccCCceEEEe
Confidence 579999954 44444443322222222110 000 123467765 4569999977655543
No 499
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.20 E-value=3.1 Score=50.22 Aligned_cols=132 Identities=16% Similarity=0.246 Sum_probs=70.9
Q ss_pred CCeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEEC--------CCCEEE
Q 001380 612 NNRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADT--------ENHALR 682 (1089)
Q Consensus 612 ~g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~--------~n~~I~ 682 (1089)
++++|+.+. .+.|+.+|.+ |+.+......... ...+.--.+.++. ++.+|+... ..+.|+
T Consensus 110 ~~~V~v~~~-~g~v~AlD~~TG~~~W~~~~~~~~--------~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~ 178 (488)
T cd00216 110 PRKVFFGTF-DGRLVALDAETGKQVWKFGNNDQV--------PPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALR 178 (488)
T ss_pred CCeEEEecC-CCeEEEEECCCCCEeeeecCCCCc--------CcceEecCCCEEE--CCEEEEeccccccccCCCCcEEE
Confidence 388998875 5789999985 8888776544210 0000000122343 244777542 246789
Q ss_pred EEECCCCeEEEEecCCCCCC-CCC-CCCcccccccC--Cce-eEEEecCCCEEEEEECCC-----------------cEE
Q 001380 683 EIDFVNDTVRTLAGNGTKGS-DYQ-GGEKGTSQLLN--SPW-DVCYKPINEKVYIAMAGQ-----------------HQI 740 (1089)
Q Consensus 683 ~~d~~~g~v~~~ag~g~~~~-~~~-~~~~~~~~~l~--~P~-~la~~~~g~~lyvad~~~-----------------~~I 740 (1089)
.+|.++|++.--...+.... ... .+......... ..| ..++++.++.+||..... +.|
T Consensus 179 alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l 258 (488)
T cd00216 179 AYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSI 258 (488)
T ss_pred EEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeE
Confidence 99998877655443221100 000 00000000000 111 257787777999986432 379
Q ss_pred EEEECCCCeEEEEe
Q 001380 741 WEHSTVDGVTRAFS 754 (1089)
Q Consensus 741 ~~~~~~~g~~~~~~ 754 (1089)
+.+|..+|+...-.
T Consensus 259 ~Ald~~tG~~~W~~ 272 (488)
T cd00216 259 VALDADTGKVKWFY 272 (488)
T ss_pred EEEcCCCCCEEEEe
Confidence 99999999876543
No 500
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=96.18 E-value=0.22 Score=52.98 Aligned_cols=152 Identities=13% Similarity=0.183 Sum_probs=106.6
Q ss_pred CCceEEEeecCCeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCE
Q 001380 602 FPGKLAIDILNNRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHA 680 (1089)
Q Consensus 602 ~P~~vavd~~~g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~ 680 (1089)
--.++.+.|.+++.||+-.-...-..+|.. |.-+.++.+. +. .-..|.+.|+|. -|++...+..
T Consensus 188 DV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~gh-es-------------DINsv~ffP~G~-afatGSDD~t 252 (343)
T KOG0286|consen 188 DVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGH-ES-------------DINSVRFFPSGD-AFATGSDDAT 252 (343)
T ss_pred cEEEEecCCCCCCeEEecccccceeeeeccCcceeEeeccc-cc-------------ccceEEEccCCC-eeeecCCCce
Confidence 344567777789999998877788888875 7666676654 22 457899999998 7899888999
Q ss_pred EEEEECCC-CeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCC-eEEEEeCCCc
Q 001380 681 LREIDFVN-DTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDG-VTRAFSGDGY 758 (1089)
Q Consensus 681 I~~~d~~~-g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g-~~~~~~g~g~ 758 (1089)
.|.||+.. ..+..+.... ....-..|+|+.+| +|.++......+..||..-+ .+..+.|..
T Consensus 253 cRlyDlRaD~~~a~ys~~~---------------~~~gitSv~FS~SG-RlLfagy~d~~c~vWDtlk~e~vg~L~GHe- 315 (343)
T KOG0286|consen 253 CRLYDLRADQELAVYSHDS---------------IICGITSVAFSKSG-RLLFAGYDDFTCNVWDTLKGERVGVLAGHE- 315 (343)
T ss_pred eEEEeecCCcEEeeeccCc---------------ccCCceeEEEcccc-cEEEeeecCCceeEeeccccceEEEeeccC-
Confidence 99999976 4455554211 12234789999988 66666666677777886544 445555443
Q ss_pred cccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEE
Q 001380 759 ERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRAL 800 (1089)
Q Consensus 759 ~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~ 800 (1089)
+.-+.|.++||| ....+-+..+.++.+
T Consensus 316 --------------NRvScl~~s~DG-~av~TgSWDs~lriW 342 (343)
T KOG0286|consen 316 --------------NRVSCLGVSPDG-MAVATGSWDSTLRIW 342 (343)
T ss_pred --------------CeeEEEEECCCC-cEEEecchhHheeec
Confidence 246789999998 666666666666543
Done!