BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 001381
         (1089 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1J8F|A Chain A, Human Sirt2 Histone Deacetylase
          Length = 323

 Score = 30.4 bits (67), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 2/74 (2%)

Query: 638 DLCTRHGATLAAGEVVLALCKYDYALPADKQKIVAGIVPGIEKAR-LYRGKGGEIMRSAV 696
           DL   HG T      V A C+++Y L   K+KI + + P  E  + L +        S  
Sbjct: 149 DLVEAHG-TFYTSHCVSASCRHEYPLSWMKEKIFSEVTPKCEDCQSLVKPDIVFFGESLP 207

Query: 697 SRFIECISLSFVSL 710
           +RF  C+   F+ +
Sbjct: 208 ARFFSCMQSDFLKV 221


>pdb|1J8F|C Chain C, Human Sirt2 Histone Deacetylase
 pdb|1J8F|B Chain B, Human Sirt2 Histone Deacetylase
          Length = 323

 Score = 30.0 bits (66), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 2/74 (2%)

Query: 638 DLCTRHGATLAAGEVVLALCKYDYALPADKQKIVAGIVPGIEKAR-LYRGKGGEIMRSAV 696
           DL   HG T      V A C+++Y L   K+KI + + P  E  + L +        S  
Sbjct: 149 DLVEAHG-TFYTSHCVSASCRHEYPLSWMKEKIFSEVTPKCEDCQSLVKPDIVFFGESLP 207

Query: 697 SRFIECISLSFVSL 710
           +RF  C+   F+ +
Sbjct: 208 ARFFSCMQSDFLKV 221


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.135    0.401 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,085,207
Number of Sequences: 62578
Number of extensions: 1038468
Number of successful extensions: 2410
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 2405
Number of HSP's gapped (non-prelim): 17
length of query: 1089
length of database: 14,973,337
effective HSP length: 109
effective length of query: 980
effective length of database: 8,152,335
effective search space: 7989288300
effective search space used: 7989288300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)