BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001381
(1089 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5ZI87|TBCD_CHICK Tubulin-specific chaperone D OS=Gallus gallus GN=TBCD PE=2 SV=1
Length = 1019
Score = 593 bits (1529), Expect = e-168, Method: Compositional matrix adjust.
Identities = 385/1012 (38%), Positives = 548/1012 (54%), Gaps = 103/1012 (10%)
Query: 50 VHKIRSIMDKYQEQGQLVEPYLENIVSPLMSIIRSKTIELGADSDEILKIIKPICIIIYT 109
V K IMDKYQEQ L++ +LE +++ L+ IIR DS + +Y
Sbjct: 58 VEKFIVIMDKYQEQPHLLDRHLEWMMNMLLDIIR--------DSGSPPVLFHLAFKFLYI 109
Query: 110 LVTVCGYKAVIKFFPHQVSDLELAVSLLEKCHDTASVTSLRQESTGEMEAKCVILLWLSI 169
+ V GYK ++ FPH+V+DL+ + + + + E + ++LLWLS+
Sbjct: 110 ITKVRGYKLFLRLFPHEVTDLQPVLDM---------IVDQNPKDCETWETRYMLLLWLSM 160
Query: 170 LVLVPFDISSVDTSIANNENLGQNEPAPLVMRILGFCKDYLSNAGPMRTIAGLLLAKLLT 229
+ L+PFD++ D +I + E + P + RIL K YL + R A +L++K +
Sbjct: 161 ICLIPFDLARFDGNILSEEG---HTRMPTMDRILEIAKCYLVVSDKARDAAAVLVSKFIV 217
Query: 230 RPDM-PTAFASFVEWTHEVLSSVTDDVMNHFRLL-GVVEALAAIFKAGGRKVLLDVIPVV 287
RPD+ A F++WT +LS + M ++ G+++ALA +FK G R+ D +P
Sbjct: 218 RPDVRQKRMADFLDWTLSMLSKSSFQSMEGTVVMNGMLQALAQLFKHGKRE---DCLPY- 273
Query: 288 WNDASTMLK-----SGSAARSPLLRKYLMKLTQRLGLTCLPRCTSAWRYVIRTSSLGENM 342
A+T+L+ S + +LRK MKL QRLGLT + + WRY SL N+
Sbjct: 274 ---AATVLECLDNCKLSESNQMVLRKLGMKLVQRLGLTFVKPKVAKWRYQRGCRSLAANL 330
Query: 343 SSRAAFREIDQCDHSVVDSLKSEQNRNCPED-EGMDVPDILEEIIEILLSGLRDTDTVVR 401
Q SV+ S K N ED E D+P +E ++E LL GL+D DT+VR
Sbjct: 331 ----------QAQSSVMQSQKITVAANEAEDDEEYDIPGEIENVVEQLLVGLKDKDTIVR 380
Query: 402 WSAAKGIGRITSCLTSSLSEEVFSSVLELFSPGEGDGSWHGGCLALAELARRGLLLPSSL 461
WSAAKGIGRIT L L+++V S+L+ FS E D +WHGGCLALAEL RRGLLLPS +
Sbjct: 381 WSAAKGIGRITGRLPKELADDVVGSLLDCFSFQETDNAWHGGCLALAELGRRGLLLPSRI 440
Query: 462 PKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTV 521
VVPVI+KAL YD +RGS SVGS++RDAA Y+ WAF RAY +++ + QI+ L+
Sbjct: 441 SDVVPVILKALTYDEKRGSCSVGSNLRDAACYLSWAFARAYDPSELIPFINQISSALVIA 500
Query: 522 ACYDREVNCRRAAAAAFQENVGRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYE 581
A +DR+VNCRRAA+AAFQENVGRQG +PHGIDI+ ADYF++ +RV YL ++V+IA +
Sbjct: 501 AVFDRDVNCRRAASAAFQENVGRQGTFPHGIDILTAADYFAVGNRVNCYLTISVYIAGFP 560
Query: 582 GYLYPFVDELLYNKICHWDKVLRELAAEALSALVKYDPEYFANFILEKLTPFTLSTDLCT 641
Y P +D L+ KI HWD V+REL+ +AL L PEY AN +L +L P ++ TDL T
Sbjct: 561 EYTQPMIDHLVNMKINHWDSVIRELSTKALHNLTPRAPEYMANVVLPRLLPLSVGTDLHT 620
Query: 642 RHGATLAAGEVVLALCKY--------DYALPADKQKIVAGIVPGIEKARLYRGKGGEIMR 693
RHGA LA E+ ALCK Y + + I + +LYRG GGE+MR
Sbjct: 621 RHGAILACAEITHALCKLAEENNRSITYYFNGKSLEGLKQIHQELCSRQLYRGLGGELMR 680
Query: 694 SAVSRFIECISLSFVSLPEKTKRSLLD---TLNENLRH-------PNSQIQNAAVKALKP 743
AV IE +SLS +P K + +N++LR ++ +AV AL
Sbjct: 681 PAVCTLIEKLSLS--KMPFKGDPIIEGWQWLINDSLRSLPLASCAARQHVKESAVSALSA 738
Query: 744 FVQTYMV----AADSGVVGGISLKYMEQLTDPNPAIRRGSALALGVLPYELLANSWRDVL 799
Y + AD + G + +Y+ +L IR G +LALG LP LL + VL
Sbjct: 739 LCNEYYINENGEADPALQGELVTQYISELQSTEQMIRCGFSLALGALPRFLLKGRLQQVL 798
Query: 800 LKLCSCCLIEENPEDRD-TEARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKN 858
L LI P D E+R +A+ + +C+T+ E G E +
Sbjct: 799 EGLRKVTLI--TPRDVSFAESRRDALIAIAEICQTVGVKGE------GSQEEYICKDNVA 850
Query: 859 EVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEICTYILCKRDFVPSPEKPQEVKSELP 918
++ +L + DY+ D+RGDVG WVREAA+ L T +L
Sbjct: 851 QIYATLLNCVTDYTTDSRGDVGGWVREAAMTSLMKVTLLL-------------------- 890
Query: 919 GNVTAEKTLFDANLATNLVAGIVKQAVEKMDKLREAAAKVLRRILYNKTIFVP-IPHREK 977
V E L +AN+ ++ + +Q+ EK+DK R A V +L+ + VP IPHRE+
Sbjct: 891 --VQNEAELINANICKQIMCWLAQQSAEKIDKFRAHAGSVFLTLLHFDSPPVPHIPHREE 948
Query: 978 LEEIVP-NEAD-LNWGVPAFSYPRFVHLLRFSCYSRVLLSGLVISIGGLQES 1027
LE I P +EA+ LNW + ++PR LL Y +L GL +S+GGL E+
Sbjct: 949 LERIFPRSEAETLNWNAASEAFPRITQLLALPAYQYYVLLGLSVSVGGLTET 1000
>sp|Q9BTW9|TBCD_HUMAN Tubulin-specific chaperone D OS=Homo sapiens GN=TBCD PE=1 SV=2
Length = 1192
Score = 589 bits (1519), Expect = e-167, Method: Compositional matrix adjust.
Identities = 391/1075 (36%), Positives = 585/1075 (54%), Gaps = 125/1075 (11%)
Query: 49 SVHKIRSIMDKYQEQGQLVEPYLENIVSPLMSIIRSKTIELGADSDEILKIIKPICIIIY 108
++ + R IMDKYQEQ L++P+LE +++ L+ I++ +T ++ +Y
Sbjct: 56 ALERFRVIMDKYQEQPHLLDPHLEWMMNLLLDIVQDQT--------SPASLVHLAFKFLY 107
Query: 109 TLVTVCGYKAVIKFFPHQVSDLELAVSLLEKCHDTASVTSLRQESTGEMEAKCVILLWLS 168
+ V GYK ++ FPH+V+D+E + L VT + E + ++LLWLS
Sbjct: 108 IITKVRGYKTFLRLFPHEVADVEPVLDL---------VTIQNPKDHEAWETRYMLLLWLS 158
Query: 169 ILVLVPFDISSVDTSIANNENLGQNEPAPLVMRILGFCKDYLSNAGPMRTIAGLLLAKLL 228
+ L+PFD S +D ++ GQ + ++ RIL + YL + R A +L+++ +
Sbjct: 159 VTCLIPFDFSRLDGNLLTQP--GQARMS-IMDRILQIAESYLIVSDKARDAAAVLVSRFI 215
Query: 229 TRPDMP-TAFASFVEWTHEVLSSVTDDVMNH-FRLLGVVEALAAIFKAGGRKVLLDVIPV 286
TRPD+ + A F++W+ L+ + M + G ++ALA IFK G R+ D +P
Sbjct: 216 TRPDVKQSKMAEFLDWSLCNLARSSFQTMQGVITMDGTLQALAQIFKHGKRE---DCLPY 272
Query: 287 VWNDASTMLKSGSAARSP-----LLRKYLMKLTQRLGLTCLPRCTSAWRYVIRTSSLGEN 341
A+T+L+ R P LLRK +KL QRLGLT L +AWRY SL N
Sbjct: 273 ----AATVLRCLDGCRLPESNQTLLRKLGVKLVQRLGLTFLKPKVAAWRYQRGCRSLAAN 328
Query: 342 MSSRAAFREIDQCDHSVVDSLKSEQNR---NCPEDEGMDVPDILEEIIEILLSGLRDTDT 398
+ ++ +SEQ +DE DVP+ +E +IE LL GL+D DT
Sbjct: 329 LQ--------------LLTQGQSEQKPLILTEDDDEDDDVPEGVERVIEQLLVGLKDKDT 374
Query: 399 VVRWSAAKGIGRITSCLTSSLSEEVFSSVLELFSPGEGDGSWHGGCLALAELARRGLLLP 458
VVRWSAAKGIGR+ L +L+++V SVL+ FS E D +WHGGCLALAEL RRGLLLP
Sbjct: 375 VVRWSAAKGIGRMAGRLPRALADDVVGSVLDCFSFQETDKAWHGGCLALAELGRRGLLLP 434
Query: 459 SSLPKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHL 518
S L VV VI+KAL YD +RG+ SVG++VRDAA YVCWAF RAY +++ + I+ L
Sbjct: 435 SRLVDVVAVILKALTYDEKRGACSVGTNVRDAACYVCWAFARAYEPQELKPFVTAISSAL 494
Query: 519 LTVACYDREVNCRRAAAAAFQENVGRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIA 578
+ A +DR++NCRRAA+AAFQENVGRQG +PHGIDI+ TADYF++ +R +L ++VFIA
Sbjct: 495 VIAAVFDRDINCRRAASAAFQENVGRQGTFPHGIDILTTADYFAVGNRSNCFLVISVFIA 554
Query: 579 QYEGYLYPFVDELLYNKICHWDKVLRELAAEALSALVKYDPEYFANFILEKLTPFTLSTD 638
+ Y P +D L+ KI HWD V+RELAA AL L + PE+ A + +L TLS D
Sbjct: 555 GFPEYTQPMIDHLVTMKISHWDGVIRELAARALHNLAQQAPEFSATQVFPRLLSMTLSPD 614
Query: 639 LCTRHGATLAAGEVVLALCKYDYALPADKQKIVAG-----IVPGIEK-------ARLYRG 686
L RHG+ LA EV AL Y L A + + V V G+++ +LYRG
Sbjct: 615 LHMRHGSILACAEVAYAL----YKLAAQENRPVTDHLDEQAVQGLKQIHQQLYDRQLYRG 670
Query: 687 KGGEIMRSAVSRFIECISLSFVSLPEKTKRSLLDT----LNENLR-------HPNSQIQN 735
GG++MR AV IE +SLS + T ++D +N+ LR H Q+++
Sbjct: 671 LGGQLMRQAVCVLIEKLSLSKMPFRGDT---VIDGWQWLINDTLRHLHLISSHSRQQMKD 727
Query: 736 AAVKALKPFVQTYMVA----ADSGVVGGISLKYMEQLTDPNPAIRRGSALALGVLPYELL 791
AAV AL Y + AD + + +Y+ +L +P R G +LALG LP LL
Sbjct: 728 AAVSALAALCSEYYMKEPGEADPAIQEELITQYLAELRNPEEMTRCGFSLALGALPGFLL 787
Query: 792 ANSWRDVLLKLCSCCLIEENPEDRD-TEARVNAVRGLVSVCETLTQSQENSLIHSGEDEI 850
+ VL L + + +PED E+R + ++ + +C+T+ + +G +
Sbjct: 788 KGRLQQVLTGLRA--VTHTSPEDVSFAESRRDGLKAIARICQTVG-------VKAGAPDE 838
Query: 851 SLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEICTYILCKRDFVPSPEKP 910
++ +++ +L +DDY+ D+RGDVG+WVR+AA+ L T +L +
Sbjct: 839 AVCGENVSQIYCALLGCMDDYTTDSRGDVGTWVRKAAMTSLMDLTLLLAR---------- 888
Query: 911 QEVKSELPGNVTAEKTLFDANLATNLVAGIVKQAVEKMDKLREAAAKVLRRILYNKTIFV 970
++ L +A+ ++ + +QA EK+D+ R AA V +L+ + +
Sbjct: 889 ------------SQPELIEAHTCERIMCCVAQQASEKIDRFRAHAASVFLTLLHFDSPPI 936
Query: 971 P-IPHREKLEEIVPNE--ADLNWGVPAFSYPRFVHLLRFSCYSRVLLSGLVISIGGLQES 1027
P +PHR +LE++ P A +NW P+ ++PR LL Y +L GLV+S+GGL ES
Sbjct: 937 PHVPHRGELEKLFPRSDVASVNWSAPSQAFPRITQLLGLPTYRYHVLLGLVVSLGGLTES 996
Query: 1028 LRKASISALLEYLQAGETEDLDARSSREYMLYNDILWVLQHYRRCDRVIVPTLKV 1082
+ S +L EY++ G D A S +L + + +RV VP LK
Sbjct: 997 TIRHSTQSLFEYMK-GIQSDPQALGS----FSGTLLQIFEDNLLNERVSVPLLKT 1046
>sp|Q28205|TBCD_BOVIN Tubulin-specific chaperone D OS=Bos taurus GN=TBCD PE=1 SV=1
Length = 1199
Score = 583 bits (1503), Expect = e-165, Method: Compositional matrix adjust.
Identities = 390/1083 (36%), Positives = 582/1083 (53%), Gaps = 125/1083 (11%)
Query: 48 SSVHKIRSIMDKYQEQGQLVEPYLENIVSPLMSIIRSKTIELGADSDEILKIIKPICIII 107
++ + R IMDKYQEQ L++P+LE +++ L+ +++KT + +D + K +
Sbjct: 63 GALERFRVIMDKYQEQPHLLDPHLEWMLNLLLEFVQNKT----SPADLVHLAFK----FL 114
Query: 108 YTLVTVCGYKAVIKFFPHQVSDLELAVSLLEKCHDTASVTSLRQESTGEMEAKCVILLWL 167
Y + V GYK ++ FPH+V+D++ + + T+ + E + ++LLWL
Sbjct: 115 YIISKVRGYKTFLRLFPHEVADVQPVLDMF---------TNQNPKDHETWETRYMLLLWL 165
Query: 168 SILVLVPFDISSVDTSIANNENLGQNEPAPLVMRILGFCKDYLSNAGPMRTIAGLLLAKL 227
S+ L+PFD S +D +++ GQ E A + RIL + YL + R A +L++K
Sbjct: 166 SVTCLIPFDFSRLDGNLSQP---GQ-ERASTMDRILQVAESYLVVSDKARDAAAVLVSKF 221
Query: 228 LTRPDMPTA-FASFVEWTHEVLS-SVTDDVMNHFRLLGVVEALAAIFKAGGRKVLLDVIP 285
+TRPD+ ASF++W+ L+ S + + G ++ALA IFK G R+ D +P
Sbjct: 222 VTRPDVKQKKMASFLDWSLCTLARSSFQTIEGVIAMDGTLQALAQIFKHGKRE---DCLP 278
Query: 286 VVWNDASTMLKSGSAARSP-----LLRKYLMKLTQRLGLTCLPRCTSAWRYVIRTSSLGE 340
A+T+L+ + R P LLRK +KL QRLGLT L + WRY SL E
Sbjct: 279 Y----AATVLQCLDSCRLPDSNQTLLRKLGVKLVQRLGLTFLKPQVAKWRYQRGCRSLAE 334
Query: 341 NMSSRAAFREIDQCDHSVVDSLKSEQNRNCPEDEGMD-VPDILEEIIEILLSGLRDTDTV 399
++ HS+ + + P+ +G D VP+ +E +IE LL GL+D DT+
Sbjct: 335 SLQ------------HSIQNPREPVTQAETPDSDGQDDVPEEVESVIEQLLVGLKDKDTI 382
Query: 400 VRWSAAKGIGRITSCLTSSLSEEVFSSVLELFSPGEGDGSWHGGCLALAELARRGLLLPS 459
VRWSAAKGIGR+ L L+++V SVL+ FS E D +WHGGCLALAEL RRGLLLPS
Sbjct: 383 VRWSAAKGIGRMAGRLPKELADDVTGSVLDCFSFQETDSAWHGGCLALAELGRRGLLLPS 442
Query: 460 SLPKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLL 519
L VVPVI++AL Y+ +RG+ SVGS+VRDAA YVCWAF RAY +++ + I+ L+
Sbjct: 443 RLSDVVPVILRALTYEEKRGACSVGSNVRDAACYVCWAFARAYEPQELKPFVAAISSALV 502
Query: 520 TVACYDREVNCRRAAAAAFQENVGRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQ 579
+DR+VNCRRAA+AAFQENVGRQG +PHGIDI+ TADYF++ +R +L +++FIA
Sbjct: 503 IATVFDRDVNCRRAASAAFQENVGRQGTFPHGIDILTTADYFAVGNRSNCFLVISMFIAG 562
Query: 580 YEGYLYPFVDELLYNKICHWDKVLRELAAEALSALVKYDPEYFANFILEKLTPFTLSTDL 639
+ Y P ++ L+ K+ HWD +REL+A+AL L + PE+ A + +L T S DL
Sbjct: 563 FPEYTQPMIEHLVTMKVGHWDGTIRELSAKALRNLAQRAPEHTAREVFPRLLSMTQSPDL 622
Query: 640 CTRHGATLAAGEVVLALCKYDYALPADKQKIVAGIVPGIEKA--------------RLYR 685
TRHGA LA EV +L + L + + V+ + EKA +LYR
Sbjct: 623 HTRHGAVLACAEVARSL----HTLATQQGRPVSDFLD--EKAMHGLKQIHQQLYDRQLYR 676
Query: 686 GKGGEIMRSAVSRFIECISLSFVSLPEKTKRSLLDT----LNENLR-------HPNSQIQ 734
G GGE+MR AV IE ++LS +P + +++D +N+ L+ H I+
Sbjct: 677 GLGGELMRQAVCILIENVALS--KMPFRGD-AVIDGWQWLINDTLKNLHLISSHSRQHIK 733
Query: 735 NAAVKALKPFVQTYMVAADSGVVGGISLK----YMEQLTDPNPAIRRGSALALGVLPYEL 790
AAV AL Y + Y+ +L P R G ALALG LP
Sbjct: 734 EAAVSALAALCSEYHAQEPGEAEAAAQEELVKLYLAELQSPEEMTRCGCALALGALPAFF 793
Query: 791 LANSWRDVLLKLCSCCLIEENPEDRD-TEARVNAVRGLVSVCETLTQSQENSLIHSGEDE 849
L R VL L + I +P+D EAR +A++ + +C+T+ E G +
Sbjct: 794 LKGRLRQVLAGLRAVTHI--SPKDVSFAEARRDALKAISRICQTVGVRAE------GPPD 845
Query: 850 ISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEICTYILCKRDFVPSPEK 909
++ +++ +L L DY+ D+RGDVG+WVREAA+ L T +L + PE
Sbjct: 846 EAVCRENVSQIYCTLLDCLKDYTTDSRGDVGAWVREAAMTSLMDLTLLLGRN----QPE- 900
Query: 910 PQEVKSELPGNVTAEKTLFDANLATNLVAGIVKQAVEKMDKLREAAAKVLRRILYNKTIF 969
L +A L L+ + +QA EK+D+ R AA+V +L+ +
Sbjct: 901 -----------------LIEAPLCQQLMCCLAQQASEKIDRFRAHAARVFLALLHADSPA 943
Query: 970 VP-IPHREKLEEIVPNE--ADLNWGVPAFSYPRFVHLLRFSCYSRVLLSGLVISIGGLQE 1026
+P +P R +LE + P A +NWG P+ ++PR LL Y +L GL +S+GGL E
Sbjct: 944 IPHVPARPELERLFPRAAVASVNWGAPSQAFPRMARLLGLPAYRYHVLLGLAVSVGGLTE 1003
Query: 1027 SLRKASISALLEYLQAGETEDLDARSSREYMLYNDILWVLQHYRRCDRVIVPTLKVHKLL 1086
S + S L EY++ + D + ++ +L V + DRV VP LK +
Sbjct: 1004 STVRYSTQGLFEYMKEIQN---DPAALEDF--GGTLLQVFEDNLLNDRVSVPLLKTLDQM 1058
Query: 1087 LKD 1089
L +
Sbjct: 1059 LAN 1061
>sp|Q8BYA0|TBCD_MOUSE Tubulin-specific chaperone D OS=Mus musculus GN=Tbcd PE=2 SV=1
Length = 1196
Score = 581 bits (1498), Expect = e-165, Method: Compositional matrix adjust.
Identities = 394/1077 (36%), Positives = 572/1077 (53%), Gaps = 118/1077 (10%)
Query: 52 KIRSIMDKYQEQGQLVEPYLENIVSPLMSIIRSKTIELGADSDEILKIIKPICIIIYTLV 111
+ R IMDKYQEQ L++P+LE +++ L+ +++ +T + ++ +Y +
Sbjct: 59 RFRVIMDKYQEQPHLLDPHLEWMMNSLLDLVQDET--------SLPDLVHLAFKFLYIIT 110
Query: 112 TVCGYKAVIKFFPHQVSDLELAVSLLEKCHDTASVTSLRQESTGEMEAKCVILLWLSILV 171
V GYK ++ FPH+V++++ + + T + E + ++LLWLS+
Sbjct: 111 KVRGYKVFLRLFPHEVANVQPVLDMF---------TGQNPKDHETWETRYMLLLWLSVTC 161
Query: 172 LVPFDISSVDTSIANNENLGQNEPAPLVMRILGFCKDYLSNAGPMRTIAGLLLAKLLTRP 231
L+PFD S +D +++ G+ P + RIL + YL + R A +L++K +TRP
Sbjct: 162 LIPFDFSRLDGNLSTQT--GETR-VPTMDRILQIAESYLVVSDKARDAAAVLVSKFITRP 218
Query: 232 DMPT-AFASFVEWTHEVLS-SVTDDVMNHFRLLGVVEALAAIFKAGGRKVLLDVIPVVWN 289
D+ ASF++W+ L+ S + + G+++ALA IFK G R+ D +P
Sbjct: 219 DVKQRKMASFLDWSLCTLAHSSFQTIEGVITMDGMLQALAQIFKHGKRE---DCLPY--- 272
Query: 290 DASTMLKSGSAARSP-----LLRKYLMKLTQRLGLTCLPRCTSAWRYVIRTSSLGENMSS 344
A+T+L+ R P LRK +KL QRLGLT L + WRY SL N+
Sbjct: 273 -ANTVLQCLDGCRLPESSHTSLRKLGVKLVQRLGLTFLKPKVATWRYQRGCRSLAANLKL 331
Query: 345 RAAFREIDQCDHSVVDSLKSEQNRNCPEDEGMDVPDILEEIIEILLSGLRDTDTVVRWSA 404
A + DQ + DSL S+ DE DVP+ +E +IE LL GL+D DTVVRWSA
Sbjct: 332 CAPGKS-DQ--KLLSDSLTSDG------DEDYDVPEGVETVIEQLLVGLKDKDTVVRWSA 382
Query: 405 AKGIGRITSCLTSSLSEEVFSSVLELFSPGEGDGSWHGGCLALAELARRGLLLPSSLPKV 464
AKGIGR+ L L+++V SVL+ FS E D +WHGGCLALAEL RRGLLLPS L +V
Sbjct: 383 AKGIGRMAGRLPRELADDVVGSVLDCFSFQETDKAWHGGCLALAELGRRGLLLPSRLSEV 442
Query: 465 VPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACY 524
V VI+KAL YD +RG+ SVG++VRDAA YVCWAF RAY ++ + I+ L+ A +
Sbjct: 443 VTVILKALTYDEKRGACSVGANVRDAACYVCWAFARAYEPQELTPFVTAISSALVIAAVF 502
Query: 525 DREVNCRRAAAAAFQENVGRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYL 584
DR VNCRRAA+AAFQENVGRQG +PHGIDI+ TADYF++ + +L ++VFIA ++ Y
Sbjct: 503 DRNVNCRRAASAAFQENVGRQGTFPHGIDILTTADYFAVGNISNCFLIISVFIAGFQEYT 562
Query: 585 YPFVDELLYNKICHWDKVLRELAAEALSALVKYDPEYFANFILEKLTPFTLSTDLCTRHG 644
P +D L+ KI HWD +REL+A+AL L PEY A + L T S DL TRHG
Sbjct: 563 KPMIDHLVSMKINHWDGAIRELSAKALHNLTPQVPEYIAMHVFPALLLMTQSPDLHTRHG 622
Query: 645 ATLAAGEVVLALCKYDYALPADKQKIVAGIVPGIEKA--------------RLYRGKGGE 690
A LA EV AL Y L ++V + EKA LYRG GGE
Sbjct: 623 AILACAEVTYAL----YKLATQSNRLVTDYLD--EKAVQSLKQIHQQLCDRHLYRGLGGE 676
Query: 691 IMRSAVSRFIECISLSFVSLP-EKTKRSLLDTLNENLR-------HPNSQIQNAAVKALK 742
+MR AV IE +SLS + + T +N+ LR H QI+ AV AL
Sbjct: 677 LMRQAVCILIEKLSLSRMPFKGDATVEGWQWLINDTLRSLHLVSSHSRQQIKEVAVSALT 736
Query: 743 PFVQTYMVA----ADSGVVGGISLKYMEQLTDPNPAIRRGSALALGVLPYELLANSWRDV 798
Y V A S + + +Y+ +L P R G + ALG LP LL + V
Sbjct: 737 ALCSEYYVKEPGEAGSSIAKELIPQYLAELQSPEEMARCGFSSALGALPGFLLRGHLQQV 796
Query: 799 L--LKLCSCCLIEENPEDRD-TEARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHL 855
L L+ +C +P D EAR + ++ + +C+T+ + DE+
Sbjct: 797 LSGLRRVTCI----SPNDVSFAEARRDGLKAISRICQTVGVNTRGP-----PDEVICKEN 847
Query: 856 IKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEICTYILCKRDFVPSPEKPQEVKS 915
I +EV +L + DY+ D+RGDVG+WVREAA+ L +L +
Sbjct: 848 I-SEVYAALLGCMSDYTTDSRGDVGAWVREAAMTSLMDLMLLLAR--------------- 891
Query: 916 ELPGNVTAEKTLFDANLATNLVAGIVKQAVEKMDKLREAAAKVLRRILYNKTIFVP-IPH 974
E L +A++ ++ + +QA EK+D+ R AA+V +L+ + +P +PH
Sbjct: 892 -------TEPVLIEAHICERVMCCVAQQASEKIDRFRAHAARVFLTLLHFDSPPIPHVPH 944
Query: 975 REKLEEIVPNE--ADLNWGVPAFSYPRFVHLLRFSCYSRVLLSGLVISIGGLQESLRKAS 1032
R++LE + P A +NW P+ ++P LL Y +L GL +S+GGL ES + S
Sbjct: 945 RQELESLFPRSDVATVNWNAPSQAFPLITQLLGLPTYRYHVLLGLAVSVGGLTESTVRHS 1004
Query: 1033 ISALLEYLQAGETEDLDARSSREYMLYNDILWVLQHYRRCDRVIVPTLKVHKLLLKD 1089
+L EY++ + + +S E +L V + DRV V LK+ LL +
Sbjct: 1005 TQSLFEYMKGIQKDAQVLQSFSETLLK-----VFEDNLLNDRVSVSLLKMLDQLLAN 1056
>sp|Q55G93|TBCD_DICDI Tubulin-specific chaperone D OS=Dictyostelium discoideum GN=tbcd
PE=3 SV=2
Length = 1480
Score = 254 bits (649), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 130/330 (39%), Positives = 210/330 (63%), Gaps = 9/330 (2%)
Query: 390 LSGLRDTDTVVRWSAAKGIGRITSCLTSSLSEEVFSSVL-ELFSPGE----GDGSWHGGC 444
+ L+D DT++RW++AK IGRI + L + ++V V+ ++F E +WHGGC
Sbjct: 487 MKSLKDKDTIIRWTSAKAIGRIVNLLPKDMGDQVIGLVIDQMFEKNEFIDADPSAWHGGC 546
Query: 445 LALAELARRGLLLPSSLPKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCH 504
LALAELARRGLLLP L VVP++++AL +DI +G++S+GSHVRD+A Y+CWA R Y +
Sbjct: 547 LALAELARRGLLLPERLDVVVPLVIRALFFDIIKGTYSIGSHVRDSACYLCWALARTYHN 606
Query: 505 TDMRNILEQIAPHLLTVACYDREVNCRRAAAAAFQENVGR-QGNYPHGIDIVNTADYFSL 563
+ + L I +L+ V+ YDRE+NCR++A+AAFQE VGR QG P+GI+IV +AD+F++
Sbjct: 607 SILSPYLLPICRNLVVVSLYDREINCRKSASAAFQEMVGRHQGLVPNGIEIVTSADFFTV 666
Query: 564 SSRVYSYLHVAVFIAQYEGYLYPFVDELLYN-KICHWDKVLRELAAEALSALVKYDPEYF 622
++ S+ + FI +++ YP V + L KI +WD +R+LA++++ L +P
Sbjct: 667 GNKNNSFTSLTTFIGKFQIDYYPIVIKHLATIKIYNWDLEIRQLASKSIHLLTNINPNDI 726
Query: 623 ANFILEKLTPFTLSTDLCTRHGATLAAGEVVLALCK-YDYALPADKQK-IVAGIVPGIEK 680
+ L + P T S + +HGA+LA E++++L + + L +D K ++ + +
Sbjct: 727 VSNYLPLIIPNTQSDLVHVKHGASLAISEILISLFENNNINLLSDNLKMMILMTIKNTKN 786
Query: 681 ARLYRGKGGEIMRSAVSRFIECISLSFVSL 710
+L++GKGG ++R + + I I L SL
Sbjct: 787 EKLFKGKGGVLIRIGMCKIIYSICLVEFSL 816
Score = 129 bits (324), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 97/343 (28%), Positives = 174/343 (50%), Gaps = 20/343 (5%)
Query: 718 LLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAAD--SGVVGGISLKYMEQLTDPNPAI 775
+L LNENL HPN ++Q A KA + Y+ + + S ++ I D N +
Sbjct: 892 ILGYLNENLNHPNEEVQKEASKAFELLFSKYISSNEKISLLLELIDSHCKTLKFDINRSA 951
Query: 776 RRGSALALGVLPYELLANSWRDVLLKLCS---CCLIEENPEDRDTEARVNAVRGL----V 828
RRGS+L LG LP+ AN D+L K+ + + +++P+ +D E RVN++ L +
Sbjct: 952 RRGSSLLLGSLPFNS-ANLSYDLLSKVVNELILSIFQDDPKFKDIETRVNSISSLYKIGI 1010
Query: 829 SVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAV 888
+ + ++QEN + + S + + ++ L A +DYS+D RGD+GSWVRE +
Sbjct: 1011 YILNLIFKNQENEQKEEEDFKKSKNYNLFIKIWNCLGLATNDYSIDKRGDIGSWVRELS- 1069
Query: 889 DGLEICTYILCKRDFVPSPEKPQEVKSELPGNVTAEKTLFDANLATNLVAGIVKQAVEKM 948
C + F+ + + + + + L + + T + + + + EK+
Sbjct: 1070 -----CKVLFDFIKFIITNQNSSTTTTTASTTDLSIENLINEKMITEFICKLFQLSGEKL 1124
Query: 949 DKLREAAAKVLRRILY--NKTIFVPIPHREKLEEIVPNEAD--LNWGVPAFSYPRFVHLL 1004
DK+R+ A K++ +L+ N + IPH+E+L++I+ + D NW S P +L
Sbjct: 1125 DKIRDVACKIIHELLWIENPSSINNIPHKEELKKIIVKDQDVHFNWFRTEESLPLICKVL 1184
Query: 1005 RFSCYSRVLLSGLVISIGGLQESLRKASISALLEYLQAGETED 1047
+F+CY LL GL S+GG + L SI ++ +Y + + ++
Sbjct: 1185 KFNCYLYPLLFGLFSSLGGTSKYLINDSIQSIKQYFSSFDNDE 1227
Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 99/401 (24%), Positives = 165/401 (41%), Gaps = 96/401 (23%)
Query: 22 KYFLQEWKIVKSLLDEIVSYGRVPD---TSSVHKIRSIMDKYQEQGQLVEPYLENIVSPL 78
K F+QE + L+D+++ S+ +I I+D+Y EQ L++ +L +I+ PL
Sbjct: 40 KTFVQEAPELTILIDKLIQLKHSNKDELISNTTRIIYIIDQYLEQPTLLDIHLNDIIQPL 99
Query: 79 MSIIRSKTIELGADSDEILK----------IIKPICI-----IIYTLVTVCGYKAVIKFF 123
++ I+S I +++ +IK + I IIY L V G+K ++K F
Sbjct: 100 INFIKSNYINNSNNNNTTTTTTTIMTETEIVIKKLSIKNSFRIIYVLSKVRGFKTIVKLF 159
Query: 124 PHQVSDLELAVSLLE-KCHDTASVTSLR-----------------------QESTGEM-- 157
H+ DL + LE H ++ R +ES E+
Sbjct: 160 QHEAIDLLPVLDQLEISYHQWVNINKQRDRLNEISVSYSSGINLKNYIKPEEESEQEVVD 219
Query: 158 -----------------------EAKCVILLWLSILVLVPFDISSVD--------TSIAN 186
E V+ LW+S+LV++PF SS+D +
Sbjct: 220 ENNNNINNNHNIDDEYNENIISWEEVYVLALWVSLLVIIPFKFSSLDSASSGTASAAGDG 279
Query: 187 NENLGQNEPAPLVMRILGFCKDYLSNAGPMRTIAGLLLAKLLTRPDMPTAFASFVEW--- 243
+ G + + RIL K LS+ +R LL+KLL RPDM F++W
Sbjct: 280 GDGDGDGQLKSISSRILKLGKLALSDVSKIRDSFSELLSKLLNRPDMKFEQKQFIKWCTN 339
Query: 244 -------THEVLSSVTDDVMNHFRLLGVVEALAAIFKAGGRKVLLDVIPVVWN------D 290
+ + N ++G+ LA +FK G R LD +P+ N +
Sbjct: 340 SIQLISNNNNNNNQNNSSNNNILLIIGIYSTLATMFKKGNR---LDFLPIDMNLYEKIME 396
Query: 291 ASTMLKSGSAARSPLLRKYLMKLTQRLGLTCLPRCTSAWRY 331
A+ L + R + +K +KL QR+ + LP +++WRY
Sbjct: 397 ANKYLSLSGSER--ITKKIFLKLLQRIAIIMLPPVSASWRY 435
>sp|Q10197|ALP1_SCHPO Tubulin-folding cofactor D OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=alp1 PE=1 SV=3
Length = 1105
Score = 182 bits (461), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 155/590 (26%), Positives = 267/590 (45%), Gaps = 79/590 (13%)
Query: 47 TSSVHKIRSIMDKYQEQGQLVEPYLENIVSPLMSIIRSKTIELGADSDEILKIIKPICII 106
+ SV K++ + KY + Q L+ ++S + + S +++ + I +I
Sbjct: 36 SHSVEKLKDVAVKYLQFCQFQPTLLDKLLSKYVPNLASYLLKVKN-----IGKCNSITVI 90
Query: 107 IYTLVTVCGYKAVIKFFPHQVSDLELAVSLLEKCHDTASVTSLRQESTGEMEAKCVILLW 166
+Y + GYKAV FP + V +++ + T L + S ++LLW
Sbjct: 91 LYQFCKIRGYKAVRVLFP-------VGVQYIKELY-----TLLNESSNNTWHFHYIVLLW 138
Query: 167 LSILVLVPFDISSVDTSIANNENLGQNEPAPLVMRILGFCKDYLSNAGPMRTIAGLLLAK 226
LS + PF ++S+D S+ + I YL N+G + + L+L++
Sbjct: 139 LSQALNTPFPLNSLDDSLDVKKT------------IYTIAIKYLENSGIDKEASCLVLSR 186
Query: 227 LLTRPDMPTAFASFVEWTHEVLSSVTDDVMNHFRLLGVVEALAAIFKAGGRKVLLDVIPV 286
L +R D F H SS + F +G + +L++ K R L + V
Sbjct: 187 LFSRDDGLDLLLGF---LHHCESSWFKRSI--FYKIGCLFSLSSFLKICPRNDCLQTVDV 241
Query: 287 VWNDASTMLKSGSAARSPLLRKYLMKLTQRLGLTCLPRCTSA-WRYVIRTSSLGENMSSR 345
+ + + + LRK L K RLG+ LP +S W+Y I S+
Sbjct: 242 AFQFLNVAREDLVGQENSALRKLLCKCYTRLGIVLLPVNSSPNWKYSI---------SNP 292
Query: 346 AAFREIDQCDHSVVDSLKSEQNRNCPEDEGMDVPDILEEIIEILLSGLRDTDTVVRWSAA 405
+F ++ P+D +V LE I++ LLS + D D+ VRWSAA
Sbjct: 293 DSFFQL-------------------PDDSNEEVHIYLEVIVDFLLSSVSDIDSFVRWSAA 333
Query: 406 KGIGRITSCLTSSLSEEVFSSVLELFS------PGEGDGS--------WHGGCLALAELA 451
KG+ +I S L +L+E+V +++EL + P E + WHG L A+LA
Sbjct: 334 KGLAKIISRLPWNLAEQVIDAIIELMTENMFLNPIENTVNISITSPLVWHGAILFFAKLA 393
Query: 452 RRGLLLPSSLPKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNIL 511
GL+ S ++P+I L Y++R G+ G +RDA+ Y W+F Y + + +
Sbjct: 394 GAGLIKYSKCLHILPLIEVGLSYEVRYGTRVTGQSIRDASCYFVWSFYHCYSKSAIEGLQ 453
Query: 512 EQIAPHLLTVACYDREVNCRRAAAAAFQENVGRQGNYPHGIDIVNTADYFSLSSRVYSYL 571
+ LL +D E+N RRAA AA E +GR + P G+ +++ +Y S++ Y
Sbjct: 454 TNLILCLLQTVLFDNEINVRRAATAALFEVIGRHASIPDGLSLISHINYVSVTDISNCYG 513
Query: 572 HVAVFIAQYEGYLYPFVDELLYNKICHWDKVLRELAAEALSAL-VKYDPE 620
+ + +A + + V + L+ + HWD +++L+A +L L +KY E
Sbjct: 514 DLCMKVAHFPQF-RSCVFQRLFTNLQHWDVKVQQLSAFSLRQLSIKYPKE 562
Score = 38.1 bits (87), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 46/104 (44%), Gaps = 24/104 (23%)
Query: 859 EVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEICTYILCKRDFVPSPEKPQEVKSELP 918
E + L + +Y D RGDVGSW+R+ A+ + + S L
Sbjct: 770 EFVKELLQVCSNYLTDTRGDVGSWIRKPAM----------------------KAISSLLV 807
Query: 919 GNVTAEKTLFDANLATNLVAGIVKQAVEKMDKLREAAAKVLRRI 962
+ + +K ++ ++ I++Q +K+D LR A + L +I
Sbjct: 808 KDSSGKK--LSEDIVWCCISYIIRQTFDKIDSLRGLAYQALEQI 849
>sp|P40987|CIN1_YEAST Chromosome instability protein 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=CIN1 PE=1 SV=1
Length = 1014
Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 80/179 (44%), Gaps = 12/179 (6%)
Query: 380 DILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSS--------LSEEVFSSVLELF 431
DIL+ I+E L T R+ A +I L + + + ++V L
Sbjct: 238 DILDAIVEFFHDHLSSNSTDTRFQLAHSFAKIAKFLHQADPASFIELIDYTIENTVSLLQ 297
Query: 432 SPGEGDGS--WHGGCLALAELARRGLLLPSSLPKVVPVIV-KALHYDIRRGSHSVGSHVR 488
+P + S H L +AE+A +L + +V+ +I+ K H+ G H+R
Sbjct: 298 APCDSIDSNELHTSLLIIAEVALAKILPIDLVDRVLTLIIPKTCHFQKSHFQIIKGHHIR 357
Query: 489 DAAAYVCWAFGRAYCHTDMR-NILEQIAPHLLTVACYDREVNCRRAAAAAFQENVGRQG 546
D+ ++ W+ R+ + +L+ + HLL A +D E+ R ++ AA QE +GR
Sbjct: 358 DSTNFIIWSVIRSNRSNSLSPQVLQSLLSHLLINAFFDPELIIRYSSFAALQELLGRSN 416
>sp|Q82T76|RPOC_NITEU DNA-directed RNA polymerase subunit beta' OS=Nitrosomonas europaea
(strain ATCC 19718 / NBRC 14298) GN=rpoC PE=3 SV=1
Length = 1404
Score = 40.4 bits (93), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 7/75 (9%)
Query: 823 AVRGLVSVC--ETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYS--VDNRGD 878
A RG +S+C + +T SQ+N +IH+ E E+ H I N+ ++ L + Y+ VD G
Sbjct: 634 ATRGGISICLDDLVTPSQKNDIIHAAEQEV---HEIANQYISGLVTQGERYNKVVDIWGR 690
Query: 879 VGSWVREAAVDGLEI 893
G V +A +D L +
Sbjct: 691 AGDQVAKAMMDQLSV 705
>sp|Q0BST5|GYRA_GRABC DNA gyrase subunit A OS=Granulibacter bethesdensis (strain ATCC
BAA-1260 / CGDNIH1) GN=gyrA PE=3 SV=1
Length = 940
Score = 38.1 bits (87), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 27/41 (65%)
Query: 850 ISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDG 890
++LF + K+EV+TS+F L+ SVD+ GD V AA DG
Sbjct: 893 VTLFRVDKDEVVTSVFPVLETESVDDNGDDADSVAPAAPDG 933
>sp|Q91YE6|IPO9_MOUSE Importin-9 OS=Mus musculus GN=Ipo9 PE=1 SV=3
Length = 1041
Score = 37.7 bits (86), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 54/124 (43%), Gaps = 11/124 (8%)
Query: 370 CPEDEGMDVPDILEE----IIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSLSEEVFS 425
C + E P+ E I E+L +GLR++ + VR S A + I ++F+
Sbjct: 90 CAQSEKFRPPETTERAKIVIRELLPNGLRESISKVRSSVAYAVSAIAHWDWPEAWPQLFN 149
Query: 426 SVLELFSPGEGDGSWHGGCLALAELARR------GLLLPSSLPKVVPVIVKALHYDIRRG 479
++E+ G+ + HG L E R L+ P LP++ + A Y IR
Sbjct: 150 LLMEMLVSGDLNAV-HGAMRVLTEFTREVTDTQMPLVAPVILPEMYKIFTMAEVYGIRTR 208
Query: 480 SHSV 483
S +V
Sbjct: 209 SRAV 212
>sp|Q96P70|IPO9_HUMAN Importin-9 OS=Homo sapiens GN=IPO9 PE=1 SV=3
Length = 1041
Score = 37.7 bits (86), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 54/124 (43%), Gaps = 11/124 (8%)
Query: 370 CPEDEGMDVPDILEE----IIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSLSEEVFS 425
C + E P+ E I E+L +GLR++ + VR S A + I ++F+
Sbjct: 90 CAQSEKFRPPETTERAKIVIRELLPNGLRESISKVRSSVAYAVSAIAHWDWPEAWPQLFN 149
Query: 426 SVLELFSPGEGDGSWHGGCLALAELARR------GLLLPSSLPKVVPVIVKALHYDIRRG 479
++E+ G+ + HG L E R L+ P LP++ + A Y IR
Sbjct: 150 LLMEMLVSGDLNAV-HGAMRVLTEFTREVTDTQMPLVAPVILPEMYKIFTMAEVYGIRTR 208
Query: 480 SHSV 483
S +V
Sbjct: 209 SRAV 212
>sp|C5BKK1|ATP6_TERTT ATP synthase subunit a OS=Teredinibacter turnerae (strain ATCC
39867 / T7901) GN=atpB PE=3 SV=1
Length = 311
Score = 35.0 bits (79), Expect = 3.0, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 219 IAGLLLAKLLTRP--DMPTAFASFVEWTHEVLSSVTDDVMNHFRLLGVVEALAAIFKAGG 276
+ G + ++ + D P ASF+E+ E ++ V DV +H L V +F
Sbjct: 77 VVGFFMRRVAVKATTDTPRGMASFIEFLVEGINGVVKDVFHHKNRL-VAPMAITVFSWVF 135
Query: 277 RKVLLDVIPVVWNDASTMLKSGS 299
L+D+IPV W + + SG+
Sbjct: 136 MMNLMDLIPVDWLPMAAQIVSGN 158
>sp|O75155|CAND2_HUMAN Cullin-associated NEDD8-dissociated protein 2 OS=Homo sapiens
GN=CAND2 PE=1 SV=3
Length = 1236
Score = 33.9 bits (76), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 67/150 (44%), Gaps = 17/150 (11%)
Query: 621 YFANFILEKLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPADKQKIVAGIVPGIEK 680
+ + +LEK+T S+D R AT +++ L K L D ++ V ++
Sbjct: 6 FHISSLLEKMT----SSDKDFRFMAT---SDLMSELQKDSIQLDEDSERKVVKML----- 53
Query: 681 ARLYRGKGGEIMRSAVSRFIECISLSFVSLPEKTKRSLLDTLNENLRHPNSQIQNAAVKA 740
RL K GE+ AV +C+ V + E +++DTL N+R Q+++ A
Sbjct: 54 LRLLEDKNGEVQNLAV----KCLGPLVVKVKEYQVETIVDTLCTNMRSDKEQLRDIAGIG 109
Query: 741 LKPFVQTYMVAA-DSGVVGGISLKYMEQLT 769
LK + AA SG+ + K QLT
Sbjct: 110 LKTVLSELPPAATGSGLATNVCRKITGQLT 139
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 390,743,183
Number of Sequences: 539616
Number of extensions: 16258464
Number of successful extensions: 41028
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 40937
Number of HSP's gapped (non-prelim): 42
length of query: 1089
length of database: 191,569,459
effective HSP length: 128
effective length of query: 961
effective length of database: 122,498,611
effective search space: 117721165171
effective search space used: 117721165171
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 67 (30.4 bits)