Query 001381
Match_columns 1089
No_of_seqs 170 out of 393
Neff 6.5
Searched_HMMs 46136
Date Thu Mar 28 23:21:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001381.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001381hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1943 Beta-tubulin folding c 100.0 1E-180 3E-185 1599.1 76.2 976 20-1088 18-1001(1133)
2 COG5234 CIN1 Beta-tubulin fold 100.0 6.7E-65 1.4E-69 580.8 37.8 503 29-656 2-525 (993)
3 PF12612 TFCD_C: Tubulin foldi 100.0 2E-29 4.2E-34 266.6 15.8 155 930-1089 2-159 (193)
4 KOG2171 Karyopherin (importin) 99.4 2.5E-10 5.4E-15 141.8 37.1 456 395-898 48-596 (1075)
5 KOG1943 Beta-tubulin folding c 99.1 6.3E-07 1.4E-11 111.0 38.9 287 581-894 336-662 (1133)
6 PRK09687 putative lyase; Provi 99.0 2.2E-08 4.8E-13 112.3 21.8 257 384-829 23-279 (280)
7 KOG2171 Karyopherin (importin) 98.9 0.00024 5.3E-09 89.7 54.0 411 380-837 155-599 (1075)
8 KOG1242 Protein containing ada 98.6 3E-05 6.4E-10 92.6 30.0 383 380-895 92-482 (569)
9 PRK09687 putative lyase; Provi 98.6 8.5E-06 1.9E-10 91.6 23.7 217 595-894 31-248 (280)
10 KOG1824 TATA-binding protein-i 98.6 0.0075 1.6E-07 74.9 50.8 513 379-965 169-723 (1233)
11 PLN03200 cellulose synthase-in 98.5 0.00026 5.7E-09 95.6 39.6 458 384-895 231-763 (2102)
12 PF01602 Adaptin_N: Adaptin N 98.5 6.4E-05 1.4E-09 91.5 30.8 430 379-891 74-519 (526)
13 PRK13800 putative oxidoreducta 98.5 6.7E-06 1.4E-10 106.5 23.2 204 595-892 692-895 (897)
14 PRK13800 putative oxidoreducta 98.5 1E-05 2.3E-10 104.7 24.1 85 722-829 812-896 (897)
15 KOG2023 Nuclear transport rece 98.5 0.0018 3.8E-08 77.7 39.8 509 381-965 212-818 (885)
16 KOG0915 Uncharacterized conser 98.4 3.1E-05 6.8E-10 98.9 25.6 158 380-547 857-1072(1702)
17 KOG2023 Nuclear transport rece 98.4 0.0012 2.7E-08 79.0 36.4 358 395-806 366-753 (885)
18 KOG1241 Karyopherin (importin) 98.4 0.017 3.6E-07 70.8 46.6 645 199-962 88-853 (859)
19 KOG1241 Karyopherin (importin) 98.3 0.013 2.7E-07 71.8 41.6 260 379-655 85-394 (859)
20 PF01602 Adaptin_N: Adaptin N 98.3 0.00021 4.7E-09 86.9 27.2 335 537-964 26-369 (526)
21 PTZ00429 beta-adaptin; Provisi 98.2 0.011 2.3E-07 74.9 41.1 421 379-958 100-540 (746)
22 KOG0213 Splicing factor 3b, su 98.2 0.0028 6E-08 76.7 32.1 417 392-836 484-958 (1172)
23 KOG1242 Protein containing ada 98.2 0.0008 1.7E-08 80.7 27.6 357 524-962 27-399 (569)
24 KOG1824 TATA-binding protein-i 98.1 0.072 1.6E-06 66.7 51.3 491 379-964 646-1186(1233)
25 PLN03200 cellulose synthase-in 98.1 0.0021 4.6E-08 87.3 32.3 329 482-834 415-766 (2102)
26 KOG0213 Splicing factor 3b, su 97.9 0.14 3.1E-06 62.6 40.8 324 519-895 721-1064(1172)
27 PTZ00429 beta-adaptin; Provisi 97.7 0.053 1.1E-06 68.8 32.9 293 511-895 102-432 (746)
28 PF12460 MMS19_C: RNAPII trans 97.6 0.097 2.1E-06 62.5 32.4 384 387-866 2-413 (415)
29 COG5181 HSH155 U2 snRNP splice 97.6 0.06 1.3E-06 64.5 28.8 332 380-786 600-945 (975)
30 COG5181 HSH155 U2 snRNP splice 97.5 0.19 4.2E-06 60.4 32.3 261 582-895 600-869 (975)
31 PF10508 Proteasom_PSMB: Prote 97.4 0.028 6.1E-07 68.7 24.8 267 594-895 84-365 (503)
32 KOG0211 Protein phosphatase 2A 97.3 0.1 2.2E-06 65.9 28.7 412 381-895 233-663 (759)
33 KOG0212 Uncharacterized conser 97.2 0.063 1.4E-06 64.0 23.8 249 389-654 5-279 (675)
34 PF10508 Proteasom_PSMB: Prote 97.2 0.15 3.3E-06 62.3 27.7 312 427-786 43-364 (503)
35 KOG0212 Uncharacterized conser 97.0 0.45 9.8E-06 57.1 27.6 370 582-1017 80-458 (675)
36 KOG0915 Uncharacterized conser 96.9 0.7 1.5E-05 61.0 30.7 324 267-657 1062-1472(1702)
37 KOG0211 Protein phosphatase 2A 96.9 1.6 3.4E-05 55.6 32.9 489 382-992 119-653 (759)
38 PF05918 API5: Apoptosis inhib 96.8 0.17 3.7E-06 61.8 23.1 237 574-835 47-300 (556)
39 KOG1062 Vesicle coat complex A 96.8 1.7 3.6E-05 54.4 30.8 386 379-836 137-548 (866)
40 KOG0166 Karyopherin (importin) 96.6 0.15 3.2E-06 61.5 20.1 224 386-652 154-391 (514)
41 PF12460 MMS19_C: RNAPII trans 96.6 0.54 1.2E-05 56.2 25.2 278 599-944 109-415 (415)
42 KOG1991 Nuclear transport rece 96.4 5.1 0.00011 51.4 41.2 119 196-324 88-216 (1010)
43 PF12755 Vac14_Fab1_bd: Vacuol 96.3 0.0062 1.4E-07 57.8 5.1 87 439-535 2-89 (97)
44 KOG1058 Vesicle coat complex C 95.7 1.4 3E-05 54.6 22.3 253 594-895 106-387 (948)
45 KOG2062 26S proteasome regulat 95.5 0.46 1E-05 58.5 17.5 100 512-654 517-618 (929)
46 KOG2259 Uncharacterized conser 95.4 9.8 0.00021 47.0 27.6 124 692-833 389-512 (823)
47 PF02985 HEAT: HEAT repeat; I 95.4 0.02 4.3E-07 42.5 3.6 30 385-414 1-30 (31)
48 TIGR02270 conserved hypothetic 95.3 1.8 3.9E-05 51.7 21.6 208 588-895 88-295 (410)
49 COG1413 FOG: HEAT repeat [Ener 95.3 0.99 2.1E-05 51.9 19.0 187 383-653 42-241 (335)
50 PF12348 CLASP_N: CLASP N term 95.3 0.41 8.9E-06 51.9 15.0 185 633-835 15-209 (228)
51 KOG0166 Karyopherin (importin) 95.2 0.86 1.9E-05 55.1 18.4 265 587-894 110-391 (514)
52 KOG1062 Vesicle coat complex A 95.2 2 4.4E-05 53.7 21.6 49 595-648 150-198 (866)
53 PF13646 HEAT_2: HEAT repeats; 94.9 0.17 3.6E-06 46.1 9.2 84 722-828 4-88 (88)
54 KOG2062 26S proteasome regulat 94.8 2.1 4.6E-05 53.1 20.2 171 721-964 523-694 (929)
55 KOG1061 Vesicle coat complex A 94.8 4.7 0.0001 50.5 23.3 196 498-746 72-268 (734)
56 KOG2259 Uncharacterized conser 94.7 6.9 0.00015 48.3 23.8 66 722-787 239-309 (823)
57 PF12348 CLASP_N: CLASP N term 94.7 1 2.3E-05 48.7 16.1 135 485-657 67-209 (228)
58 cd00020 ARM Armadillo/beta-cat 94.1 0.077 1.7E-06 50.5 5.0 106 385-499 8-119 (120)
59 PF12755 Vac14_Fab1_bd: Vacuol 94.0 0.54 1.2E-05 44.7 10.5 95 819-964 2-96 (97)
60 KOG1059 Vesicle coat complex A 93.9 2.9 6.3E-05 51.8 18.5 240 565-833 160-402 (877)
61 PF12717 Cnd1: non-SMC mitotic 93.8 3.5 7.6E-05 43.3 17.4 133 730-891 1-134 (178)
62 KOG1967 DNA repair/transcripti 93.8 1.2 2.6E-05 56.3 15.5 147 758-958 866-1018(1030)
63 KOG2025 Chromosome condensatio 93.7 23 0.00049 44.4 25.4 268 603-962 22-292 (892)
64 KOG1060 Vesicle coat complex A 93.7 14 0.00031 46.5 23.9 124 692-831 408-532 (968)
65 COG1413 FOG: HEAT repeat [Ener 93.5 7.5 0.00016 44.7 21.1 189 511-786 71-271 (335)
66 COG5116 RPN2 26S proteasome re 93.5 6.2 0.00013 47.8 19.9 173 720-965 519-692 (926)
67 KOG1248 Uncharacterized conser 93.4 34 0.00073 45.2 27.5 307 599-965 529-857 (1176)
68 TIGR02270 conserved hypothetic 93.2 5.4 0.00012 47.7 19.5 151 587-787 55-206 (410)
69 KOG0392 SNF2 family DNA-depend 93.2 2.5 5.4E-05 55.2 17.2 113 518-654 81-196 (1549)
70 PF13251 DUF4042: Domain of un 92.7 0.43 9.4E-06 50.5 8.4 153 487-655 2-175 (182)
71 PF12717 Cnd1: non-SMC mitotic 92.6 4.2 9.1E-05 42.8 15.8 90 565-655 4-93 (178)
72 COG5096 Vesicle coat complex, 92.1 38 0.00081 43.4 25.3 121 491-654 74-195 (757)
73 KOG0414 Chromosome condensatio 92.0 21 0.00045 47.0 23.0 180 585-807 921-1102(1251)
74 KOG0392 SNF2 family DNA-depend 92.0 6.8 0.00015 51.5 18.7 158 625-833 77-238 (1549)
75 PF13513 HEAT_EZ: HEAT-like re 91.4 0.3 6.6E-06 40.8 4.4 52 601-652 1-55 (55)
76 KOG1240 Protein kinase contain 91.2 11 0.00025 49.4 19.4 278 602-963 438-724 (1431)
77 KOG1060 Vesicle coat complex A 91.0 56 0.0012 41.6 25.5 98 514-652 108-207 (968)
78 KOG1058 Vesicle coat complex C 90.9 14 0.0003 46.5 19.1 287 379-686 129-453 (948)
79 KOG2274 Predicted importin 9 [ 90.8 61 0.0013 41.8 40.6 74 380-454 85-159 (1005)
80 KOG1020 Sister chromatid cohes 90.7 80 0.0017 43.0 38.9 507 381-966 813-1370(1692)
81 PF13646 HEAT_2: HEAT repeats; 90.6 0.42 9E-06 43.4 4.9 58 384-448 31-88 (88)
82 KOG1248 Uncharacterized conser 89.6 87 0.0019 41.7 54.3 387 487-965 490-899 (1176)
83 COG5116 RPN2 26S proteasome re 89.2 15 0.00032 44.8 17.0 135 512-705 514-650 (926)
84 PF12054 DUF3535: Domain of un 88.8 30 0.00065 41.9 20.0 59 396-455 99-158 (441)
85 KOG1240 Protein kinase contain 88.6 5.3 0.00011 52.2 13.7 244 380-658 458-729 (1431)
86 PF12054 DUF3535: Domain of un 88.4 21 0.00045 43.3 18.2 106 601-707 101-210 (441)
87 PF05918 API5: Apoptosis inhib 88.3 47 0.001 41.3 21.1 158 688-872 34-191 (556)
88 KOG2025 Chromosome condensatio 87.9 49 0.0011 41.6 20.6 133 380-538 122-254 (892)
89 PF12719 Cnd3: Nuclear condens 87.5 22 0.00047 40.6 17.1 72 584-656 24-95 (298)
90 KOG1991 Nuclear transport rece 86.8 1.2E+02 0.0025 39.9 45.9 392 55-545 93-534 (1010)
91 PF05004 IFRD: Interferon-rela 86.7 49 0.0011 38.1 19.3 192 520-748 49-259 (309)
92 PF13513 HEAT_EZ: HEAT-like re 86.2 0.91 2E-05 37.9 3.8 34 378-411 22-55 (55)
93 PF02985 HEAT: HEAT repeat; I 85.4 1.1 2.5E-05 33.1 3.5 28 588-616 2-29 (31)
94 COG5240 SEC21 Vesicle coat com 85.0 1.1E+02 0.0023 37.9 22.8 275 601-963 278-554 (898)
95 KOG4224 Armadillo repeat prote 83.6 30 0.00064 40.3 15.0 219 595-833 216-447 (550)
96 cd00020 ARM Armadillo/beta-cat 83.5 4.3 9.4E-05 38.3 7.6 104 722-831 12-119 (120)
97 KOG4653 Uncharacterized conser 83.3 19 0.00041 45.9 14.5 152 380-546 764-921 (982)
98 PF01347 Vitellogenin_N: Lipop 82.9 45 0.00098 41.8 18.4 137 758-962 430-587 (618)
99 KOG2137 Protein kinase [Signal 82.1 45 0.00097 42.0 17.0 212 390-652 279-494 (700)
100 COG5096 Vesicle coat complex, 81.5 52 0.0011 42.2 17.6 142 624-789 54-196 (757)
101 KOG1992 Nuclear export recepto 81.2 1.8E+02 0.0039 37.6 24.0 60 598-657 99-158 (960)
102 PF05004 IFRD: Interferon-rela 80.4 1.2E+02 0.0026 35.0 20.2 191 627-833 45-258 (309)
103 KOG1820 Microtubule-associated 80.2 49 0.0011 43.0 17.0 192 620-835 248-446 (815)
104 COG5215 KAP95 Karyopherin (imp 77.9 1.9E+02 0.0041 35.9 41.3 274 379-658 89-441 (858)
105 KOG0413 Uncharacterized conser 77.8 2.4E+02 0.0052 37.1 30.8 147 386-546 474-648 (1529)
106 PF14500 MMS19_N: Dos2-interac 77.2 61 0.0013 36.5 15.0 106 389-503 4-114 (262)
107 COG5215 KAP95 Karyopherin (imp 76.6 2E+02 0.0044 35.7 37.0 473 420-959 319-853 (858)
108 KOG2956 CLIP-associating prote 74.6 1.9E+02 0.004 35.2 18.2 138 688-836 342-481 (516)
109 KOG2956 CLIP-associating prote 72.7 71 0.0015 38.5 14.3 184 263-517 306-494 (516)
110 KOG4653 Uncharacterized conser 72.7 2.1E+02 0.0046 37.1 19.0 230 625-899 727-967 (982)
111 PF04826 Arm_2: Armadillo-like 72.3 1.6E+02 0.0034 33.1 16.6 118 525-649 24-158 (254)
112 PF08506 Cse1: Cse1; InterPro 71.7 1E+02 0.0022 36.5 15.8 162 400-562 112-307 (370)
113 KOG4224 Armadillo repeat prote 71.3 77 0.0017 37.1 13.7 233 385-655 209-494 (550)
114 PF08167 RIX1: rRNA processing 70.5 94 0.002 32.3 13.6 115 758-895 24-142 (165)
115 cd00256 VATPase_H VATPase_H, r 69.4 1.1E+02 0.0023 37.1 15.3 109 387-503 104-219 (429)
116 PF14500 MMS19_N: Dos2-interac 69.3 1.2E+02 0.0026 34.2 15.0 102 813-965 9-112 (262)
117 COG5218 YCG1 Chromosome conden 68.8 3.1E+02 0.0066 34.3 18.5 154 381-570 129-289 (885)
118 KOG2032 Uncharacterized conser 67.3 3E+02 0.0065 33.7 20.5 70 380-449 254-326 (533)
119 KOG2160 Armadillo/beta-catenin 66.6 1.8E+02 0.0039 34.0 15.7 88 564-656 98-198 (342)
120 KOG0414 Chromosome condensatio 65.2 3.4E+02 0.0073 36.6 19.1 173 445-639 899-1085(1251)
121 COG5064 SRP1 Karyopherin (impo 63.8 12 0.00026 42.9 5.5 228 385-654 158-398 (526)
122 COG5095 TAF6 Transcription ini 63.0 61 0.0013 36.9 10.6 109 794-964 198-316 (450)
123 PF03224 V-ATPase_H_N: V-ATPas 62.9 26 0.00056 40.2 8.4 156 385-545 106-271 (312)
124 PF11864 DUF3384: Domain of un 62.0 3.7E+02 0.008 32.8 23.0 113 415-546 169-288 (464)
125 KOG4535 HEAT and armadillo rep 62.0 3.7E+02 0.008 32.9 24.3 65 485-549 102-185 (728)
126 KOG1820 Microtubule-associated 62.0 2E+02 0.0044 37.6 16.6 202 510-800 250-455 (815)
127 KOG1061 Vesicle coat complex A 60.7 4.7E+02 0.01 33.6 23.5 96 378-475 115-214 (734)
128 PF01347 Vitellogenin_N: Lipop 59.5 2.9E+02 0.0064 34.6 17.6 142 712-891 430-584 (618)
129 KOG1949 Uncharacterized conser 59.1 2.1E+02 0.0045 36.4 15.0 142 718-893 175-328 (1005)
130 COG5218 YCG1 Chromosome conden 58.4 2.1E+02 0.0046 35.6 14.6 139 471-613 91-263 (885)
131 KOG1525 Sister chromatid cohes 58.2 6.7E+02 0.015 34.6 28.2 58 815-895 271-328 (1266)
132 KOG0567 HEAT repeat-containing 57.2 3.4E+02 0.0073 30.8 17.3 161 596-789 78-250 (289)
133 cd08050 TAF6 TATA Binding Prot 57.0 47 0.001 38.9 9.2 136 515-652 179-338 (343)
134 KOG1059 Vesicle coat complex A 55.2 5.7E+02 0.012 32.9 27.2 62 595-657 152-213 (877)
135 KOG2005 26S proteasome regulat 54.6 3.5E+02 0.0076 34.3 15.8 197 600-830 502-702 (878)
136 PF07571 DUF1546: Protein of u 53.9 30 0.00064 32.6 5.6 54 599-652 18-76 (92)
137 COG5240 SEC21 Vesicle coat com 53.5 5.5E+02 0.012 32.2 25.1 75 379-454 259-334 (898)
138 smart00638 LPD_N Lipoprotein N 52.7 2.3E+02 0.0049 35.4 14.9 142 712-891 392-540 (574)
139 KOG0889 Histone acetyltransfer 50.9 9.9E+02 0.021 36.4 21.1 151 587-748 985-1157(3550)
140 COG5234 CIN1 Beta-tubulin fold 50.1 45 0.00098 41.8 7.6 145 856-1041 684-834 (993)
141 PF12612 TFCD_C: Tubulin foldi 48.9 81 0.0018 33.6 8.8 104 510-616 4-116 (193)
142 KOG0168 Putative ubiquitin fus 48.7 2.4E+02 0.0051 36.7 13.4 182 385-617 168-365 (1051)
143 PF03130 HEAT_PBS: PBS lyase H 48.6 18 0.0004 26.0 2.6 14 400-413 1-14 (27)
144 KOG1822 Uncharacterized conser 48.1 5.9E+02 0.013 36.3 17.7 107 722-836 881-992 (2067)
145 PF08167 RIX1: rRNA processing 47.5 2.3E+02 0.0049 29.5 11.6 127 380-517 21-159 (165)
146 PF08568 Kinetochor_Ybp2: Unch 45.2 3.4E+02 0.0073 34.5 14.9 106 437-545 360-473 (633)
147 PF00514 Arm: Armadillo/beta-c 43.5 39 0.00084 26.4 4.0 29 587-616 13-41 (41)
148 PLN03076 ARF guanine nucleotid 43.3 1.3E+03 0.027 33.4 28.3 92 794-901 1344-1450(1780)
149 PF04826 Arm_2: Armadillo-like 43.1 2.5E+02 0.0054 31.6 11.7 149 758-964 11-163 (254)
150 PF12719 Cnd3: Nuclear condens 43.1 5.5E+02 0.012 29.2 18.5 104 716-833 26-144 (298)
151 KOG1967 DNA repair/transcripti 42.9 1.5E+02 0.0033 38.6 10.7 154 381-540 864-1021(1030)
152 PF10363 DUF2435: Protein of u 42.0 49 0.0011 31.2 5.1 49 380-432 39-87 (92)
153 PF08161 NUC173: NUC173 domain 41.6 2.1E+02 0.0045 31.0 10.4 151 380-542 37-198 (198)
154 COG5098 Chromosome condensatio 41.6 3.7E+02 0.0079 34.3 13.3 133 585-739 894-1030(1128)
155 PF12074 DUF3554: Domain of un 40.4 6.4E+02 0.014 29.2 16.4 161 585-747 60-236 (339)
156 KOG0889 Histone acetyltransfer 39.4 1.6E+03 0.035 34.4 20.5 159 716-895 983-1154(3550)
157 KOG1078 Vesicle coat complex C 39.0 1E+03 0.022 31.1 21.1 63 594-657 252-314 (865)
158 KOG1077 Vesicle coat complex A 38.7 9.8E+02 0.021 30.9 27.4 88 568-657 93-180 (938)
159 KOG0567 HEAT repeat-containing 38.6 6.4E+02 0.014 28.7 16.1 93 758-894 186-278 (289)
160 KOG0168 Putative ubiquitin fus 37.7 1.1E+03 0.024 31.1 17.3 52 585-637 210-266 (1051)
161 smart00638 LPD_N Lipoprotein N 37.5 9E+02 0.02 30.1 18.9 134 636-786 408-543 (574)
162 PF10274 ParcG: Parkin co-regu 36.9 2.6E+02 0.0057 29.9 10.0 69 758-832 37-109 (183)
163 PF08506 Cse1: Cse1; InterPro 34.0 2.5E+02 0.0054 33.3 10.4 136 599-741 222-370 (370)
164 cd08050 TAF6 TATA Binding Prot 33.9 4.5E+02 0.0099 30.8 12.5 57 396-452 280-340 (343)
165 KOG4535 HEAT and armadillo rep 33.1 1E+03 0.022 29.4 20.4 56 598-653 118-178 (728)
166 KOG1949 Uncharacterized conser 32.8 9.2E+02 0.02 31.1 14.8 170 647-830 148-329 (1005)
167 KOG4413 26S proteasome regulat 32.2 8.8E+02 0.019 28.4 23.3 222 593-830 88-331 (524)
168 KOG0946 ER-Golgi vesicle-tethe 31.9 2.4E+02 0.0053 36.3 10.0 113 586-705 122-241 (970)
169 KOG2933 Uncharacterized conser 31.5 1.8E+02 0.0039 33.6 8.1 155 376-546 80-237 (334)
170 KOG2933 Uncharacterized conser 31.3 6.7E+02 0.015 29.1 12.5 121 606-742 107-230 (334)
171 PF10274 ParcG: Parkin co-regu 29.7 5E+02 0.011 27.8 10.7 33 382-414 36-68 (183)
172 PF13251 DUF4042: Domain of un 29.6 7.2E+02 0.016 26.5 13.3 54 602-656 1-71 (182)
173 PF08389 Xpo1: Exportin 1-like 29.3 5.5E+02 0.012 25.1 11.6 35 732-770 3-37 (148)
174 PF05600 DUF773: Protein of un 28.1 6.7E+02 0.015 31.1 13.1 138 583-744 12-161 (507)
175 smart00567 EZ_HEAT E-Z type HE 27.7 61 0.0013 23.5 2.6 14 399-412 2-15 (30)
176 PF14676 FANCI_S2: FANCI solen 27.4 4.2E+02 0.0091 27.6 9.6 119 606-741 37-156 (158)
177 COG5098 Chromosome condensatio 26.5 1.3E+03 0.028 29.8 14.5 151 585-746 260-415 (1128)
178 PF07571 DUF1546: Protein of u 25.7 1.8E+02 0.0039 27.3 6.0 59 395-453 17-79 (92)
179 KOG0946 ER-Golgi vesicle-tethe 25.5 8.2E+02 0.018 31.9 12.9 185 758-984 21-219 (970)
180 COG5095 TAF6 Transcription ini 25.4 56 0.0012 37.2 2.9 67 585-651 280-356 (450)
181 PF00514 Arm: Armadillo/beta-c 24.9 1.1E+02 0.0025 23.7 3.8 29 385-413 13-41 (41)
182 PF08064 UME: UME (NUC010) dom 24.5 6.4E+02 0.014 24.3 11.4 61 813-898 25-85 (107)
183 KOG2759 Vacuolar H+-ATPase V1 23.9 1.3E+03 0.029 27.8 16.9 66 587-654 367-438 (442)
184 PF08767 CRM1_C: CRM1 C termin 23.3 1.2E+03 0.026 27.0 15.5 143 259-452 87-244 (319)
185 PF12074 DUF3554: Domain of un 22.9 1.2E+03 0.026 26.9 14.4 69 586-654 22-90 (339)
186 COG5064 SRP1 Karyopherin (impo 22.1 1.3E+03 0.029 27.1 22.0 291 692-1041 88-424 (526)
187 KOG0413 Uncharacterized conser 21.6 5.2E+02 0.011 34.3 10.2 69 714-786 1003-1071(1529)
188 KOG2149 Uncharacterized conser 21.6 7.9E+02 0.017 29.4 11.3 128 588-768 60-191 (393)
189 KOG1822 Uncharacterized conser 21.5 1E+03 0.023 34.0 13.6 150 587-747 52-207 (2067)
190 KOG1243 Protein kinase [Genera 21.4 4.7E+02 0.01 33.4 9.9 76 582-658 326-402 (690)
191 PF10363 DUF2435: Protein of u 20.7 7.2E+02 0.016 23.4 9.4 71 201-276 3-75 (92)
192 KOG1243 Protein kinase [Genera 20.1 8.7E+02 0.019 31.1 11.7 73 796-899 329-401 (690)
No 1
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-180 Score=1599.14 Aligned_cols=976 Identities=44% Similarity=0.694 Sum_probs=870.4
Q ss_pred hHHhHHhhHHHHHHHHHHHH-hcCCCCChhhHHHHHHHHHhhhhcCCCchHhHHhhHHHHHHHHHhhcccCCCChhHHhh
Q 001381 20 LQKYFLQEWKIVKSLLDEIV-SYGRVPDTSSVHKIRSIMDKYQEQGQLVEPYLENIVSPLMSIIRSKTIELGADSDEILK 98 (1089)
Q Consensus 20 ~~~~F~~e~~ev~~ll~~l~-~~~~~~~~~~~~~~~~il~~yqeqP~LLD~~L~~~i~~L~~~~~~~~~~~~~~~~~~~~ 98 (1089)
..+.|-.|..++.+++++|+ ++.....+...+++..++++|||||+||||||+.+++.|++.++....+..
T Consensus 18 ~~ea~~~~l~~ir~lld~i~~~~~~~~~e~~~~~~~~vl~kyQeqP~LLDp~L~~~v~~L~~~v~~~~~d~~-------- 89 (1133)
T KOG1943|consen 18 SLEAFPCELYQIRSLLDSIRVSGGRTSREVPLEQYSRVLDKYQEQPHLLDPHLESIVPNLLDIVRKFTIDLG-------- 89 (1133)
T ss_pred HHHHHHHHHHHHHHHHhhhhhccCCcCCcchhHHHHHHHHHHhhchhhccchHHHHHHHHHHHHHhccccch--------
Confidence 55566269999999999997 666667777899999999999999999999999999999999986544333
Q ss_pred hhHHHHHhheeeeeeecccceeccCCCCccCHHHHHHHHHhccccccccccccCCcchhHHHHHHHHHHHHHhhcCCCCC
Q 001381 99 IIKPICIIIYTLVTVCGYKAVIKFFPHQVSDLELAVSLLEKCHDTASVTSLRQESTGEMEAKCVILLWLSILVLVPFDIS 178 (1089)
Q Consensus 99 ~~~~i~~~lY~l~KVRG~K~i~~~fP~ev~~Le~vl~~l~~~~~~~~~~~~~~~~~~~We~~YvlLlWLS~Lvl~PFdL~ 178 (1089)
..+.+++++|.+|||||||+|+++|||+|.||+|++++|+.+++ ++..+|++||++|+|||++|++||||+
T Consensus 90 ~~~l~~e~ly~l~kvrgyK~v~k~fPh~V~~Le~il~lL~~~np---------ss~~~~~~ryilLlWLsvlllnPF~l~ 160 (1133)
T KOG1943|consen 90 ELHLAFEYLYILCKVRGYKAVLKLFPHQVSDLEPILDLLERQNP---------SSFSDWETRYILLLWLSVLLLNPFDLS 160 (1133)
T ss_pred hhHHHHHHHHHHHhhccchhhHHhCCcHHHHHHHHHHHHhccCc---------chHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 23778899999999999999999999999999999999996655 456899999999999999999999999
Q ss_pred CCCCcccccccCCCCCChhHHHHHHHHHHHhhhcCCchhhHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccccccchh
Q 001381 179 SVDTSIANNENLGQNEPAPLVMRILGFCKDYLSNAGPMRTIAGLLLAKLLTRPDMPTAFASFVEWTHEVLSSVTDDVMNH 258 (1089)
Q Consensus 179 ~id~~~~~~~~~~~~~~~~l~~rIl~l~~~yL~~~~k~r~~Aa~LLsrl~tR~D~~~~l~~f~~w~~~~l~~~~~~~~~~ 258 (1089)
++|.+... +..+++.||+..++.|+...|+.|.+||.|++|+++|+|+.+.+.+|++|.++..+. ..++.
T Consensus 161 rlD~s~~~-------~kt~~i~rI~~~~~~Yl~~~~~~r~~aalllsk~~sR~D~~~~~~~Fl~~~l~~~s~---~~~n~ 230 (1133)
T KOG1943|consen 161 RLDESLTF-------DKTNVILRILSFFENYLISSGILRRSAALLLSKLFSRTDVKDLLLSFLDWLLDCPST---ETPNI 230 (1133)
T ss_pred ccCccccc-------CCchHHHHHHHHHHHHHhccchhHHHHHHHHHHHcccccHHHHHHHHHHHhhcccch---hhhhh
Confidence 99985432 234789999999999999999999999999999999999999999999995544332 22335
Q ss_pred HHHHHHHHHHHHHHHhcChhhhhhhhHHHHHhhhhhhccCcCCCchhHHHHHHHHHHHhhhcccCCCCcccccccccccc
Q 001381 259 FRLLGVVEALAAIFKAGGRKVLLDVIPVVWNDASTMLKSGSAARSPLLRKYLMKLTQRLGLTCLPRCTSAWRYVIRTSSL 338 (1089)
Q Consensus 259 ~~~~G~L~~l~~ilk~~~~~~l~~~~~~i~~~~~~l~~~~~~~~~~l~rKl~~Kl~~rlal~~L~pr~~~wrY~rg~rsL 338 (1089)
|+..|.|..+++|||+++|+++.||.+..++.......++. ...+.||+++|++||||+++||||+++|||+||+|||
T Consensus 231 ~~~~g~L~al~ai~k~~~r~d~l~~~~~~~r~L~~~~~~~d--~~~llrKllvKl~QRiGlv~l~prs~sWrY~rg~rsl 308 (1133)
T KOG1943|consen 231 FYKLGFLIALLAIFKHGSRKDLLPYSDTGLRMLSVCRESND--GQSLLRKLLVKLVQRIGLVSLKPRSPSWRYSRGTRSL 308 (1133)
T ss_pred HHHHHHHHHHHHHHHhcchhhhHHHhhhhhHhhcccccccc--cHhHHHHHHHHHHHHhhheecCCCCcchhhhcccchh
Confidence 88889999999999999999999999999883322222220 0379999999999999999999999999999999999
Q ss_pred ccccccccccccccccCccccccccccccCCCCCCCCCCchHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhCcc
Q 001381 339 GENMSSRAAFREIDQCDHSVVDSLKSEQNRNCPEDEGMDVPDILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSS 418 (1089)
Q Consensus 339 ~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~e~vE~iI~~ll~~L~d~dt~vR~saAK~l~rI~~~L~~~ 418 (1089)
.+||+..+.++ +++.-. .++++|+.|||++||.+|++|+++|+|.||.||||||||+|||+.|||++
T Consensus 309 ~~nl~~~s~~~------------~~~~~~-~~~d~e~edv~eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~ 375 (1133)
T KOG1943|consen 309 ASNLDPDSFAP------------SEPVIL-QQDDDEGEDVPEIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPE 375 (1133)
T ss_pred hhccCcccccc------------Cccccc-ccccccccccHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHH
Confidence 99998654422 111111 12345555699999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHHhcCCCCCCcccchHHHHHHhhhhhccccccCCChhhhhhhhHHHHHh
Q 001381 419 LSEEVFSSVLELFSPGEGDGSWHGGCLALAELARRGLLLPSSLPKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAF 498 (1089)
Q Consensus 419 ~a~~vi~~il~~l~~~~~~~~wHg~~LaLael~~~~ll~p~~l~~il~~i~~~L~f~~r~~~~svG~~VRDAacfi~Wsl 498 (1089)
+++|||+++++.|++.+++.+|||+|||||||++||+++|+++++|+|+|++||+||+++|.+|+|+||||||||+||||
T Consensus 376 Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf 455 (1133)
T KOG1943|consen 376 LADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAF 455 (1133)
T ss_pred HHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCccchhHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHhcccCCCCCCccceecccccchhhhHHHHHHHHHHHH
Q 001381 499 GRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAAAAAFQENVGRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIA 578 (1089)
Q Consensus 499 aR~~~~~~l~~~~~~l~~~Ll~~alfD~e~~iRRaAsAAlQE~vGR~g~~p~GI~il~~~d~~~v~~r~~a~~~va~~va 578 (1089)
+|+|+|++++|++++|+..||++++||||+||||||+|||||+|||||++||||+|++++|||+|++|++||.+++..+|
T Consensus 456 ~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia 535 (1133)
T KOG1943|consen 456 ARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIA 535 (1133)
T ss_pred HhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcchHHHHHHHHhCccCCCCHHHHHHHHHHHHHHHccCchhhHHHHHHHhccccCCCChhhHHHHHHHHHHHHHHHhc
Q 001381 579 QYEGYLYPFVDELLYNKICHWDKVLRELAAEALSALVKYDPEYFANFILEKLTPFTLSTDLCTRHGATLAAGEVVLALCK 658 (1089)
Q Consensus 579 ~~~~Y~~~li~~Ll~~~l~h~D~~iR~laa~aL~~L~~~~~~~~~~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~l~~ 658 (1089)
+|+.|++++++||+..|+.|||..+|++||.||.+|....|+++++.++|.+++.+.+.|...|||+.++.+|++.++++
T Consensus 536 ~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~ 615 (1133)
T KOG1943|consen 536 EFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRK 615 (1133)
T ss_pred hhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cc--cc-CChhHHHHHHhhhHHHHhhhhccCcchHHHHHHHHHHHHHhhhcCCCCchh-hHHHHHHHHHHhcCCCcHHHH
Q 001381 659 YD--YA-LPADKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLPEK-TKRSLLDTLNENLRHPNSQIQ 734 (1089)
Q Consensus 659 ~~--~~-~~~~~~~~i~~i~~~~~~~~l~r~~~gelir~a~~~lI~~ls~~~lp~~~~-~~~~~~~~L~~~L~~~~~~V~ 734 (1089)
.. .. .++..+..+..+++.++++.+|||+| ++||.++|.+|+.++.++.++..+ ..+.|..++..++++++ .||
T Consensus 616 l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~-~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~ 693 (1133)
T KOG1943|consen 616 LEPVIKGLDENRIAGLLSIIPPICDRYFYRGQG-TLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIR 693 (1133)
T ss_pred hhhhhhhhHHHHhhhhhhhccHHHHHHhccchH-HHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHH
Confidence 76 22 35566667777899999999999988 999999999999999888776655 55789999999998888 999
Q ss_pred HHHHHHHHHHHHHhhhccCcchhhhhHHHHHHHhC-CCChhhhhhHHHHhhccchHhhhhhHHHHHHHHhhhccccCCCC
Q 001381 735 NAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLT-DPNPAIRRGSALALGVLPYELLANSWRDVLLKLCSCCLIEENPE 813 (1089)
Q Consensus 735 ~aAa~Al~~l~~~y~~~~~~~~~~~~v~~~~~~L~-s~~~~~r~G~a~aLG~lp~~~~~~~~~~i~~~L~~~~~~~~~~~ 813 (1089)
++|.+|++.++..|+..++++. ..++.+++..+. .+++..|+|+++|+|.+|+++.+.++++++ +.+.....+ .
T Consensus 694 ~~av~av~~l~s~y~~~d~~~~-~~li~~~ls~~~~~~~~~~r~g~~lal~~lp~~~i~~~~q~~l---c~~~l~~~p-~ 768 (1133)
T KOG1943|consen 694 DAAVSAVSDLVSTYVKADEGEE-APLITRYLSRLTKCSEERIRRGLILALGVLPSELIHRHLQEKL---CKLVLELLP-S 768 (1133)
T ss_pred HHHHHHHHHHHHHHHhcCchhh-hHHHHHHHHHhcCchHHHHHHHHHHHHccCcHHhhchHHHHHH---HHHHhccCc-c
Confidence 9999999999999998765443 368899999996 558999999999999999999887766555 333222222 3
Q ss_pred CCCHHHHHHHHHHHHHHHhhhccccccccccCCcchhhhhhhhHHHHHHHHHHhcccCCCCCCCCcchHHHHHHHHHHHH
Q 001381 814 DRDTEARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEI 893 (1089)
Q Consensus 814 ~~d~e~R~~al~sL~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~L~DYT~D~RGDVGSwVR~aa~~~l~~ 893 (1089)
+.|+++|++.+.++.++|.+++. ..+.....++.++|++||+|||||+|||||||||++||+++..
T Consensus 769 d~~a~aR~~~V~al~~v~~~~~~--------------~~~~~~~~k~~e~LL~~lddYttd~rGDVGswVReaAm~al~~ 834 (1133)
T KOG1943|consen 769 DAWAEARQQNVKALAHVCKTVTS--------------LLFSESIEKFRETLLNALDDYTTDSRGDVGSWVREAAMKALSS 834 (1133)
T ss_pred cccHHHHHHHHHHHHHHHHHHHH--------------hhccccHHHHHHHHHHHHhhcccccCccHHHHHHHHHHHHHHh
Confidence 44999999999999999998873 2344678999999999999999999999999999999999998
Q ss_pred HHHHhhccCCCCCCCCCccccccCCCCccccccccCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhccCccCC-c
Q 001381 894 CTYILCKRDFVPSPEKPQEVKSELPGNVTAEKTLFDANLATNLVAGIVKQAVEKMDKLREAAAKVLRRILYNKTIFVP-I 972 (1089)
Q Consensus 894 l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~llrq~~EkiD~vR~~A~~~L~~l~~~~~~~~~-~ 972 (1089)
+...+. .|++++++.+++++++++||++|||||+|+.|+.++.++.++ .|++| +
T Consensus 835 ~~~~l~------------------------~p~~ld~~~i~~~~~~~vqQ~veKIdrlre~a~~~~~qi~~~-~~~i~~~ 889 (1133)
T KOG1943|consen 835 LLDTLS------------------------SPKLLDEDSINRIIRYFVQQAVEKIDRLRELAASALNQIVVH-SPSIPHF 889 (1133)
T ss_pred hhhhhc------------------------CcccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhceeec-CCCCCcc
Confidence 864443 268899999999999999999999999999999999999999 68999 9
Q ss_pred cchHHHhhhcCCCc-ccCcCCCCChhhHHhhhcChhhhHHHHHhhhhcccccCchhhHHHHHHHHHHHHHcccCccchhc
Q 001381 973 PHREKLEEIVPNEA-DLNWGVPAFSYPRFVHLLRFSCYSRVLLSGLVISIGGLQESLRKASISALLEYLQAGETEDLDAR 1051 (1089)
Q Consensus 973 ~~~~~L~~~f~~~~-~~~w~~~~~~f~~~~~lL~~~~y~~~~l~Glv~SaG~~teslv~~S~~aL~~y~~~~~~~~~~~~ 1051 (1089)
||.+.|.++|+.+. ..+|..+...||+++.++.+|.|+++++.|+++|+||++|++++.|..++++|++ +..+ +
T Consensus 890 ~~~~~L~ei~~~~~a~~~~~~~~~~f~L~~~Ll~~~~y~~~v~lGl~vs~ggl~esl~k~a~q~l~e~~R--~~~~---d 964 (1133)
T KOG1943|consen 890 RHIEKLEEIFPRDYANVPWALPPTLFPLNSSLLELPRYYEEVLLGLVVSLGGLTESLIKLAKQALLEYVR--DENS---D 964 (1133)
T ss_pred hHHHHHHhhcCcccccCCCcccchhhhHHHHHHhhHHHHHHHhhhhHHHhhhhHHHHHHHHHHHHHHHHH--Hhhc---C
Confidence 99999999999643 7899999999999999999999999999999999999999999999999999999 4444 5
Q ss_pred hhHHHHHHHHHHHHHHhhcCCCeeeccHHHHHHHhhc
Q 001381 1052 SSREYMLYNDILWVLQHYRRCDRVIVPTLKVHKLLLK 1088 (1089)
Q Consensus 1052 ~~~l~~~~~~ll~il~~~~~~~Rv~vP~l~~l~~Ll~ 1088 (1089)
+......+.++.+++..+..++|+..|.++++..+|+
T Consensus 965 p~t~~~~~stl~~~~~~~l~~eri~~~~l~~l~~~f~ 1001 (1133)
T KOG1943|consen 965 PKTIGSRDSTLLQLIEEALLNERIMERFLRPLMIVFN 1001 (1133)
T ss_pred cccccchHHHHHHHHHHHHHHHHhcCccceeHHHHhc
Confidence 6677788999999999999999999999999988875
No 2
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=100.00 E-value=6.7e-65 Score=580.76 Aligned_cols=503 Identities=26% Similarity=0.387 Sum_probs=388.1
Q ss_pred HHHHHHHHHHHhcCCCCChhh-HHHHHHHHHhhhhcCCCchHhHHhhHHHHHHHHHhhcccCCCChhHHhhhhHHHHHhh
Q 001381 29 KIVKSLLDEIVSYGRVPDTSS-VHKIRSIMDKYQEQGQLVEPYLENIVSPLMSIIRSKTIELGADSDEILKIIKPICIII 107 (1089)
Q Consensus 29 ~ev~~ll~~l~~~~~~~~~~~-~~~~~~il~~yqeqP~LLD~~L~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l 107 (1089)
+|...+.+..+...+...++. -..-.++++.+|.||.||||-|+..++.|+.++..-.. + ...+.-.+
T Consensus 2 ~~~~~~s~s~q~~~~tl~p~~H~~~~v~~~~~~q~~P~lld~llp~~vp~L~~~~f~~~~----k-------~n~~~a~l 70 (993)
T COG5234 2 DESLITSRSSQILDDTLDPRSHSVEAVKYLQFCQFQPTLLDKLLPKYVPNLASYLFKVKG----K-------CNSITAIL 70 (993)
T ss_pred chHHHHhhhhhccCcccCccccchhHHHHHHhcccCcccccchhhhhHHHHHHHHhhhcC----C-------cchHHHHH
Confidence 355666666666555444433 22377899999999999999999999999997754211 1 14577789
Q ss_pred eeeeeeecccceeccCCCCccCHHHHHHHHHhccccccccccccCCcchhHHHHHHHHHHHHHhhcCCCCCCCCCccccc
Q 001381 108 YTLVTVCGYKAVIKFFPHQVSDLELAVSLLEKCHDTASVTSLRQESTGEMEAKCVILLWLSILVLVPFDISSVDTSIANN 187 (1089)
Q Consensus 108 Y~l~KVRG~K~i~~~fP~ev~~Le~vl~~l~~~~~~~~~~~~~~~~~~~We~~YvlLlWLS~Lvl~PFdL~~id~~~~~~ 187 (1089)
|.+||.||+|.|...||.-|.+++.++.+|.... ++.|...|++++||+.-..+||.|++++.+..
T Consensus 71 ~q~~~~~~h~~v~v~l~~~I~~i~e~~~ll~dr~------------~sp~sf~~i~~~yL~~~~~~~~~l~sla~k~~-- 136 (993)
T COG5234 71 YQFCKIRGHKAVRVLLPVGIQYIKELYTLLNDRS------------NSPWSFHYIVLLYLSQALNTPFPLNSLADKLD-- 136 (993)
T ss_pred HHHHHHhhhhhhhhhchHHHHHHHHHHHHhhccc------------CCCCccchhhHhhhhhhhcCccccchhhhhhh--
Confidence 9999999999999999999999999999998543 36899999999999999999999999988643
Q ss_pred ccCCCCCChhHHHHHHHHHHHhhhcCCchhhHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccccccchhHHHHHHHHH
Q 001381 188 ENLGQNEPAPLVMRILGFCKDYLSNAGPMRTIAGLLLAKLLTRPDMPTAFASFVEWTHEVLSSVTDDVMNHFRLLGVVEA 267 (1089)
Q Consensus 188 ~~~~~~~~~~l~~rIl~l~~~yL~~~~k~r~~Aa~LLsrl~tR~D~~~~l~~f~~w~~~~l~~~~~~~~~~~~~~G~L~~ 267 (1089)
.-..+. +.+||.+.+.+-++.-..+++++-|.|..+.+.. .+ .+++.|.|.-
T Consensus 137 ----------~~kT~~--~~~~leN~pi~i~~~nlv~~~lff~~da~d~ll~--------------Rs--~~~cl~~l~q 188 (993)
T COG5234 137 ----------VKKTIY--AIKYLENSPIDIEASNLVLSRLFFRDDALDLLLK--------------RS--IFYCLFSLSQ 188 (993)
T ss_pred ----------cCcEee--hhhHHhcCCCCCCHHHHHHHHHHHHHhHHHHHHH--------------HH--HHHHHHHHHH
Confidence 111222 7788999999999999999999999999877331 11 1444455544
Q ss_pred HHHHHHhcChhhhhhhhHHHHHhhhhhhccCcCCCchhHHHHHHHHHHHhhhcccCCCCccccccccccccccccccccc
Q 001381 268 LAAIFKAGGRKVLLDVIPVVWNDASTMLKSGSAARSPLLRKYLMKLTQRLGLTCLPRCTSAWRYVIRTSSLGENMSSRAA 347 (1089)
Q Consensus 268 l~~ilk~~~~~~l~~~~~~i~~~~~~l~~~~~~~~~~l~rKl~~Kl~~rlal~~L~pr~~~wrY~rg~rsL~~nl~~~~~ 347 (1089)
..+++- +..+...|. + ...++.-++|+++|.+.|+|...+|. |+.-
T Consensus 189 flki~~--qS~e~a~fy---------~----~g~e~s~L~~~l~~~lS~lGi~llP~----------------~~pi--- 234 (993)
T COG5234 189 FLKICL--QSVEVAQFY---------L----VGQENSALRKLLCKCLSRLGIVLLPV----------------NLPI--- 234 (993)
T ss_pred HHHHhh--eecccceeE---------E----ecccHHHHHHHHHHHhhhcCceeccc----------------ccCc---
Confidence 444432 111111111 1 12236789999999999999998873 2210
Q ss_pred cccccccCccccccccccccCCCCCCCCCCchHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhCcchhhhHHHHH
Q 001381 348 FREIDQCDHSVVDSLKSEQNRNCPEDEGMDVPDILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSLSEEVFSSV 427 (1089)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~e~vE~iI~~ll~~L~d~dt~vR~saAK~l~rI~~~L~~~~a~~vi~~i 427 (1089)
+.+.+....+|-||+++++++++.++.+||++|||+++|.+|||...++++|+ +
T Consensus 235 -------------------------~sN~~sh~~l~~iV~f~~~s~Ss~~~~~rf~~a~~~aki~srl~w~l~~sfi~-i 288 (993)
T COG5234 235 -------------------------DSNEESHIYLEVIVDFLLSSVSSIDSFVRFSAAKGLAKIISRLPWNLAESFID-I 288 (993)
T ss_pred -------------------------ccCcchhHHHHHHHHHHHcCcccccHHHHHHHHhhHHHHHhhcccccHHHHHH-H
Confidence 12234568999999999999999999999999999999999999999988888 7
Q ss_pred HhhcCCC--------------CCCcchHHHHHHHHHHHhcCCCCCCcccc--hHHHHHHhhhhhccccccCCChhhhhhh
Q 001381 428 LELFSPG--------------EGDGSWHGGCLALAELARRGLLLPSSLPK--VVPVIVKALHYDIRRGSHSVGSHVRDAA 491 (1089)
Q Consensus 428 l~~l~~~--------------~~~~~wHg~~LaLael~~~~ll~p~~l~~--il~~i~~~L~f~~r~~~~svG~~VRDAa 491 (1089)
++...++ .++.+|||+.+.+| |+.-+. --+.+ +.|++.+|+.|+++.++.+.|.+|||++
T Consensus 289 i~~~~en~~~s~l~~~cdii~tnel~w~~~i~~~a-la~~~~---id~~d~~i~~iI~kg~~y~~~~~~~v~g~~IRdss 364 (993)
T COG5234 289 IELMTENMFLSPLENTCDIIITNELVWHGAILFFA-LAGAGL---IDYSDCLILPIIEKGLSYEVRYGTRVTGQSIRDSS 364 (993)
T ss_pred HHhcccccchhhhhCccceeecchHHHHHHHHHHH-Hhhccc---cchhhhhhhhheccccceeehheeeeccceeeccc
Confidence 7654332 35779999988888 554443 22333 6699999999999999999999999999
Q ss_pred hHHHHHhhhccCccchhHHHHHHHHHHHHH-HhcCCCchhhHHHHHHHHHHhcccCCCCCCccceecccccchhhhHHHH
Q 001381 492 AYVCWAFGRAYCHTDMRNILEQIAPHLLTV-ACYDREVNCRRAAAAAFQENVGRQGNYPHGIDIVNTADYFSLSSRVYSY 570 (1089)
Q Consensus 492 cfi~WslaR~~~~~~l~~~~~~l~~~Ll~~-alfD~e~~iRRaAsAAlQE~vGR~g~~p~GI~il~~~d~~~v~~r~~a~ 570 (1089)
||++||+.|+|+.+.. +-++....+|++. ++||||+||||||.||+||.+||+-.+|-|..++..++|.+|.+..+++
T Consensus 365 ~f~vWs~~r~~S~s~~-~~lqt~L~hll~~~alFDpel~vRr~a~Aal~E~iGR~~s~a~g~~lIslIN~~sv~r~s~cs 443 (993)
T COG5234 365 CFFVWSFYRCYSKSAI-EGLQTNLIHLLLQTALFDPELNVRRAATAALFEVIGRHASIADGLSLISLINYVSVTRISNCS 443 (993)
T ss_pred ceeeeeeeeccccccc-hhHHHHHHHHHHhhhhcCchhhhhhHHHHHHHHHhccCCCcccchhhhhhccceecchhhhcc
Confidence 9999999999986544 4488877777777 9999999999999999999999998999999999999999999999999
Q ss_pred HHHHHHHHhhhcchHH--H-HHHHHhCccCCCCHHHHHHHHHHHHHHHccCchhhHHHHHHHhccccCCCChhhHHHHHH
Q 001381 571 LHVAVFIAQYEGYLYP--F-VDELLYNKICHWDKVLRELAAEALSALVKYDPEYFANFILEKLTPFTLSTDLCTRHGATL 647 (1089)
Q Consensus 571 ~~va~~va~~~~Y~~~--l-i~~Ll~~~l~h~D~~iR~laa~aL~~L~~~~~~~~~~~vlp~Ll~~l~~~d~~~RHG~lL 647 (1089)
-.+...++.++.++.. + =+||+. ++.|||+++..+.+.+|..+.+.-.+ .+.++|.++.++.++ ...|.-.
T Consensus 444 g~~~r~~~~~~k~~~CedVF~diLl~-Nl~H~~~~~k~~~~y~l~~liK~~~~--~p~yl~~Il~k~~sd---fi~~~~i 517 (993)
T COG5234 444 GDLCRKVAHFPKFRSCEDVFQDILLT-NLQHWDVKVKQLSAYSLRQLIKYPKE--LPIYLPPILDKLSSD---FIFGYTI 517 (993)
T ss_pred hHHHHHhcCccccchHHHHHHHHHHh-hhhccchhhhhhccccHHHHhcCccc--CchhhhHHhhhCchh---hhcchhh
Confidence 9999999988765544 4 445665 89999999999999999999764321 223456666555532 3334333
Q ss_pred HHHHHHHHH
Q 001381 648 AAGEVVLAL 656 (1089)
Q Consensus 648 alaevl~~l 656 (1089)
++.++..+
T Consensus 518 -l~~~~k~F 525 (993)
T COG5234 518 -LASIIKGF 525 (993)
T ss_pred -HHHHHHHh
Confidence 66776665
No 3
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=99.96 E-value=2e-29 Score=266.61 Aligned_cols=155 Identities=43% Similarity=0.717 Sum_probs=144.3
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhccCccCC-ccchHHHhhhcCCCc--ccCcCCCCChhhHHhhhcCh
Q 001381 930 ANLATNLVAGIVKQAVEKMDKLREAAAKVLRRILYNKTIFVP-IPHREKLEEIVPNEA--DLNWGVPAFSYPRFVHLLRF 1006 (1089)
Q Consensus 930 ~~~~~~l~~~llrq~~EkiD~vR~~A~~~L~~l~~~~~~~~~-~~~~~~L~~~f~~~~--~~~w~~~~~~f~~~~~lL~~ 1006 (1089)
++.++++|++|+||++|||||||..|+.+|.+++++..+.++ +|+++.|.++|+.+. ..+|..+.++||+++++|++
T Consensus 2 ~~~~~~~~~~llrqa~EKiDrvR~~A~~~l~~ll~~~~~~~~~ip~~~~L~~i~~~~~~~~~~w~~~~~~F~~l~~LL~~ 81 (193)
T PF12612_consen 2 PELVQQIIGGLLRQAAEKIDRVREVAGKCLQRLLHSQDPTIPHIPHREELQDIFPSESEASLNWSSSSEYFPRLVKLLDL 81 (193)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCcHHHHHHHcccccccccccCCHHHHHHHHHHHhcc
Confidence 678999999999999999999999999999999977767788 999999999998876 36899999999999999999
Q ss_pred hhhHHHHHhhhhcccccCchhhHHHHHHHHHHHHHcccCccchhchhHHHHHHHHHHHHHHhhcCCCeeeccHHHHHHHh
Q 001381 1007 SCYSRVLLSGLVISIGGLQESLRKASISALLEYLQAGETEDLDARSSREYMLYNDILWVLQHYRRCDRVIVPTLKVHKLL 1086 (1089)
Q Consensus 1007 ~~y~~~~l~Glv~SaG~~teslv~~S~~aL~~y~~~~~~~~~~~~~~~l~~~~~~ll~il~~~~~~~Rv~vP~l~~l~~L 1086 (1089)
|+|+++++.|+|+|+||+||+++++|+.||++|++++ +. +.+.+..++++|++++++|.++|||+||+|+|+++|
T Consensus 82 ~~y~~~ll~Glv~S~G~~tesl~~~s~~AL~~~~~~~--~~---~~~~~~~v~~~l~~il~~~~~~dRv~vP~l~tl~~L 156 (193)
T PF12612_consen 82 PEYRYSLLSGLVVSAGGLTESLVRASSAALLSYLREL--SD---SPEELEQVLSDLLSILKENLRNDRVVVPLLKTLDFL 156 (193)
T ss_pred HHHHHHHHhHHHhcCCCCchhHHHHHHHHHHHHHHHh--hc---CHHHHHHHHHHHHHHHHHhCCCCCeeecHHHHHHHH
Confidence 9999999999999999999999999999999999732 22 677899999999999999999999999999999999
Q ss_pred hcC
Q 001381 1087 LKD 1089 (1089)
Q Consensus 1087 l~~ 1089 (1089)
|++
T Consensus 157 l~~ 159 (193)
T PF12612_consen 157 LSS 159 (193)
T ss_pred HhC
Confidence 974
No 4
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=2.5e-10 Score=141.77 Aligned_cols=456 Identities=18% Similarity=0.196 Sum_probs=291.6
Q ss_pred CCChhHHHHHHHHHHHHHhh----hCcchhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHHhcCCCCCCcccchHHHHHH
Q 001381 395 DTDTVVRWSAAKGIGRITSC----LTSSLSEEVFSSVLELFSPGEGDGSWHGGCLALAELARRGLLLPSSLPKVVPVIVK 470 (1089)
Q Consensus 395 d~dt~vR~saAK~l~rI~~~----L~~~~a~~vi~~il~~l~~~~~~~~wHg~~LaLael~~~~ll~p~~l~~il~~i~~ 470 (1089)
..|+.+|--||==+-|+..+ |+.+.-.++-..+|..+.....+...|..|-++||++|.-+ |+.-|++++.+.+
T Consensus 48 ~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l--~e~WPell~~L~q 125 (1075)
T KOG2171|consen 48 SADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDL--PEKWPELLQFLFQ 125 (1075)
T ss_pred CCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcc--ccchHHHHHHHHH
Confidence 57888888888555555554 66666777888888888776677788999999999999864 5577889999877
Q ss_pred hhhhhccccccCCChhhhhhhhHHHHHhhhccCccchhHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHhccc-----
Q 001381 471 ALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAAAAAFQENVGRQ----- 545 (1089)
Q Consensus 471 ~L~f~~r~~~~svG~~VRDAacfi~WslaR~~~~~~l~~~~~~l~~~Ll~~alfD~e~~iRRaAsAAlQE~vGR~----- 545 (1089)
+.. |.-.+.|-+|-+++|++.+.++. .+.||+..+ ..|+..++-|++..||=+|..|+.-++--+
T Consensus 126 ~~~--------S~~~~~rE~al~il~s~~~~~~~-~~~~~~~~l-~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~ 195 (1075)
T KOG2171|consen 126 STK--------SPNPSLRESALLILSSLPETFGN-TLQPHLDDL-LRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKS 195 (1075)
T ss_pred Hhc--------CCCcchhHHHHHHHHhhhhhhcc-ccchhHHHH-HHHHHHhccCCcchHHHHHHHHHHHHHHHhccchH
Confidence 653 33367999999999999999984 677777654 456779999999999999998875443322
Q ss_pred ------CCCCCCccceecc-cccchhhhHHHHHHHHHHHHhhhcchHHHHHHHHhCc-----cCCCCHHHHHHHHHHHHH
Q 001381 546 ------GNYPHGIDIVNTA-DYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNK-----ICHWDKVLRELAAEALSA 613 (1089)
Q Consensus 546 ------g~~p~GI~il~~~-d~~~v~~r~~a~~~va~~va~~~~Y~~~li~~Ll~~~-----l~h~D~~iR~laa~aL~~ 613 (1089)
..+|..|.+++.. +.-...+...+|..+...+...+.+..+.+..+++.. =..-|..+|.+|-+.|--
T Consensus 196 ~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs 275 (1075)
T KOG2171|consen 196 EVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVS 275 (1075)
T ss_pred HHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 1245555444322 1112222234444444444445566666666665532 125677788887776655
Q ss_pred HHccCc-------------------------------------------------------------hhhHHHHHHHhcc
Q 001381 614 LVKYDP-------------------------------------------------------------EYFANFILEKLTP 632 (1089)
Q Consensus 614 L~~~~~-------------------------------------------------------------~~~~~~vlp~Ll~ 632 (1089)
++...| +.+...+++.+-.
T Consensus 276 ~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~ 355 (1075)
T KOG2171|consen 276 LSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEA 355 (1075)
T ss_pred HHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHH
Confidence 543321 1222344555555
Q ss_pred ccCCCChhhHHHHHHHHHHHHHHHhcccccCChhHHHHHHhhhHHHHhhhhccCcchHHHHHHHHHHHHHhhhcCCCCch
Q 001381 633 FTLSTDLCTRHGATLAAGEVVLALCKYDYALPADKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLPE 712 (1089)
Q Consensus 633 ~l~~~d~~~RHG~lLalaevl~~l~~~~~~~~~~~~~~i~~i~~~~~~~~l~r~~~gelir~a~~~lI~~ls~~~lp~~~ 712 (1089)
.+++.+|..||.+++|++.+..+.++.-. ....+|.+++-...+. .-..+|.|+|..|+.++..-.|.-.
T Consensus 356 ~l~S~~w~~R~AaL~Als~i~EGc~~~m~----~~l~~Il~~Vl~~l~D------phprVr~AA~naigQ~stdl~p~iq 425 (1075)
T KOG2171|consen 356 MLQSTEWKERHAALLALSVIAEGCSDVMI----GNLPKILPIVLNGLND------PHPRVRYAALNAIGQMSTDLQPEIQ 425 (1075)
T ss_pred HhcCCCHHHHHHHHHHHHHHHcccHHHHH----HHHHHHHHHHHhhcCC------CCHHHHHHHHHHHHhhhhhhcHHHH
Confidence 67899999999999999999887653211 1123333333332222 2347999999999998863323211
Q ss_pred h-hHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHHHHHhhhccCcchhhhhHHHHHH----Hh-CCCChhhhhhHHHHhhc
Q 001381 713 K-TKRSLLDTLNENL-RHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYME----QL-TDPNPAIRRGSALALGV 785 (1089)
Q Consensus 713 ~-~~~~~~~~L~~~L-~~~~~~V~~aAa~Al~~l~~~y~~~~~~~~~~~~v~~~~~----~L-~s~~~~~r~G~a~aLG~ 785 (1089)
+ ...+....|...+ +..+..||..|+.|+-.++..- ++..+..+.+.+++ .| +++++..+.+...|+|+
T Consensus 426 k~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~----~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIas 501 (1075)
T KOG2171|consen 426 KKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEEC----DKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIAS 501 (1075)
T ss_pred HHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhC----cHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence 1 2233332233333 4566789999999998887642 23344334443333 33 58889999999999998
Q ss_pred cch---HhhhhhHHHHHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHhhhccccccccccCCcchhhhhhhhHHHHHH
Q 001381 786 LPY---ELLANSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMT 862 (1089)
Q Consensus 786 lp~---~~~~~~~~~i~~~L~~~~~~~~~~~~~d~e~R~~al~sL~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~ 862 (1089)
+-. ..+.++++.++..|.+.+.-.. .+...+-|...+++++-+-.-+|-. -+.....++++
T Consensus 502 vA~AA~~~F~pY~d~~Mp~L~~~L~n~~--~~d~r~LrgktmEcisli~~AVGke--------------~F~~~a~eliq 565 (1075)
T KOG2171|consen 502 VADAAQEKFIPYFDRLMPLLKNFLQNAD--DKDLRELRGKTMECLSLIARAVGKE--------------KFLPLAEELIQ 565 (1075)
T ss_pred HHHHHhhhhHhHHHHHHHHHHHHHhCCC--chhhHHHHhhHHHHHHHHHHHhhhh--------------hhhHhHHHHHH
Confidence 842 2356778889988887765332 2456788999999988876666642 22355677888
Q ss_pred HHHHhcc-cCCCCCCCCcchHHHHHHHHHHHHHHHHh
Q 001381 863 SLFKALD-DYSVDNRGDVGSWVREAAVDGLEICTYIL 898 (1089)
Q Consensus 863 ~Ll~~L~-DYT~D~RGDVGSwVR~aa~~~l~~l~~ll 898 (1089)
.++.+.. |-+.|.+ -|.-.+.+...++..+
T Consensus 566 ll~~~~~~~~~~dd~------~~sy~~~~warmc~il 596 (1075)
T KOG2171|consen 566 LLLELQGSDQDDDDP------LRSYMIAFWARMCRIL 596 (1075)
T ss_pred HHHhhcccchhhccc------cHHHHHHHHHHHHHHh
Confidence 8877743 3322322 3555555555555444
No 5
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=6.3e-07 Score=111.02 Aligned_cols=287 Identities=19% Similarity=0.127 Sum_probs=177.0
Q ss_pred hcchHHHHHHHHhCccCCCCHHHHHHHHHHHHHHHccCchhhHHHHHHHhccccCC-CChhhHHHHHHHHHHHHHHHhcc
Q 001381 581 EGYLYPFVDELLYNKICHWDKVLRELAAEALSALVKYDPEYFANFILEKLTPFTLS-TDLCTRHGATLAAGEVVLALCKY 659 (1089)
Q Consensus 581 ~~Y~~~li~~Ll~~~l~h~D~~iR~laa~aL~~L~~~~~~~~~~~vlp~Ll~~l~~-~d~~~RHG~lLalaevl~~l~~~ 659 (1089)
|+|.+.+++||+. .+.|-|..+|--||+.+|++++..|..+++.++...++.+.. .+-..-||++|++||+... +.
T Consensus 336 ~eivE~vie~Lls-~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~r--Gl 412 (1133)
T KOG1943|consen 336 PEIVEFVIEHLLS-ALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELALR--GL 412 (1133)
T ss_pred HHHHHHHHHHHHH-hccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhc--CC
Confidence 4788999999997 899999999999999999999999988888888888875443 3468889999999999753 11
Q ss_pred cccCChhHHHHHHhhhHHHHh--hhhccCcchHHHHHHHHHHHHHhhhcCCCCc-hhhHH-HHHHHHHHhcCCCcHHHHH
Q 001381 660 DYALPADKQKIVAGIVPGIEK--ARLYRGKGGEIMRSAVSRFIECISLSFVSLP-EKTKR-SLLDTLNENLRHPNSQIQN 735 (1089)
Q Consensus 660 ~~~~~~~~~~~i~~i~~~~~~--~~l~r~~~gelir~a~~~lI~~ls~~~lp~~-~~~~~-~~~~~L~~~L~~~~~~V~~ 735 (1089)
..+...+.|..++..... .+......|.-+|.|+|.++=+++.+.-|-. ...+. -....+...+.+++-++|.
T Consensus 413 ---Llps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRR 489 (1133)
T KOG1943|consen 413 ---LLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRR 489 (1133)
T ss_pred ---cchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhH
Confidence 123333333333222211 2222224588999999999988887543321 11222 2223455677999999999
Q ss_pred HHHHHHHHHHHHhhhccCcchh--------------------------hhhHHHHHHH-----hCCCChhhhhhHHHHhh
Q 001381 736 AAVKALKPFVQTYMVAADSGVV--------------------------GGISLKYMEQ-----LTDPNPAIRRGSALALG 784 (1089)
Q Consensus 736 aAa~Al~~l~~~y~~~~~~~~~--------------------------~~~v~~~~~~-----L~s~~~~~r~G~a~aLG 784 (1089)
+|+.|+-+.+...-....+..+ +.+..-+++. +..+++..|.-+|.+|.
T Consensus 490 AAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~ 569 (1133)
T KOG1943|consen 490 AASAALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALH 569 (1133)
T ss_pred HHHHHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHH
Confidence 9999998775542111001100 1111222222 33677888888888876
Q ss_pred cc----chHhhhhhHHHHHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHhhhccccccccccCCcchhhhhhhhHHHH
Q 001381 785 VL----PYELLANSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEV 860 (1089)
Q Consensus 785 ~l----p~~~~~~~~~~i~~~L~~~~~~~~~~~~~d~e~R~~al~sL~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i 860 (1089)
-+ |+.+....+.++++.. ...|++.|-.+..+.+++....-...... ..+.++.+..+
T Consensus 570 ~Ls~~~pk~~a~~~L~~lld~~----------ls~~~~~r~g~~la~~ev~~~~~~l~~~~--------~~l~e~~i~~l 631 (1133)
T KOG1943|consen 570 KLSLTEPKYLADYVLPPLLDST----------LSKDASMRHGVFLAAGEVIGALRKLEPVI--------KGLDENRIAGL 631 (1133)
T ss_pred HHHHhhHHhhcccchhhhhhhh----------cCCChHHhhhhHHHHHHHHHHhhhhhhhh--------hhhHHHHhhhh
Confidence 65 3333333334444322 45689999999999988764332110000 01122222222
Q ss_pred HHHHHHhcccCCCCCCCCcchHHHHHHHHHHHHH
Q 001381 861 MTSLFKALDDYSVDNRGDVGSWVREAAVDGLEIC 894 (1089)
Q Consensus 861 ~~~Ll~~L~DYT~D~RGDVGSwVR~aa~~~l~~l 894 (1089)
...+-..+++|.- ||- |-..|.+..++++.+
T Consensus 632 ~~ii~~~~~~~~~--rg~-~~lmr~~~~~~Ie~~ 662 (1133)
T KOG1943|consen 632 LSIIPPICDRYFY--RGQ-GTLMRQATLKFIEQL 662 (1133)
T ss_pred hhhccHHHHHHhc--cch-HHHHHHHHHHHHHHh
Confidence 2233344556543 552 366999999999886
No 6
>PRK09687 putative lyase; Provisional
Probab=99.02 E-value=2.2e-08 Score=112.30 Aligned_cols=257 Identities=19% Similarity=0.099 Sum_probs=164.4
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhCcchhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHHhcCCCCCCcccc
Q 001381 384 EIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSLSEEVFSSVLELFSPGEGDGSWHGGCLALAELARRGLLLPSSLPK 463 (1089)
Q Consensus 384 ~iI~~ll~~L~d~dt~vR~saAK~l~rI~~~L~~~~a~~vi~~il~~l~~~~~~~~wHg~~LaLael~~~~ll~p~~l~~ 463 (1089)
.-++.|+..|.|.|+.|||.++++|+.+.. +++++.+..++++.+..
T Consensus 23 ~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~-------~~~~~~l~~ll~~~d~~-------------------------- 69 (280)
T PRK09687 23 LNDDELFRLLDDHNSLKRISSIRVLQLRGG-------QDVFRLAIELCSSKNPI-------------------------- 69 (280)
T ss_pred ccHHHHHHHHhCCCHHHHHHHHHHHHhcCc-------chHHHHHHHHHhCCCHH--------------------------
Confidence 346778888899999999999999987753 34555555555443322
Q ss_pred hHHHHHHhhhhhccccccCCChhhhhhhhHHHHHhhhccCccchhHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHhc
Q 001381 464 VVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAAAAAFQENVG 543 (1089)
Q Consensus 464 il~~i~~~L~f~~r~~~~svG~~VRDAacfi~WslaR~~~~~~l~~~~~~l~~~Ll~~alfD~e~~iRRaAsAAlQE~vG 543 (1089)
||-+|..++.-+.....+ ....+..|....+-|++..||++|..||+.+ |
T Consensus 70 -----------------------vR~~A~~aLg~lg~~~~~------~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~-~ 119 (280)
T PRK09687 70 -----------------------ERDIGADILSQLGMAKRC------QDNVFNILNNLALEDKSACVRASAINATGHR-C 119 (280)
T ss_pred -----------------------HHHHHHHHHHhcCCCccc------hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcc-c
Confidence 333333333333221110 0112222333457899999999999997443 2
Q ss_pred ccCCCCCCccceecccccchhhhHHHHHHHHHHHHhhhcchHHHHHHHHhCccCCCCHHHHHHHHHHHHHHHccCchhhH
Q 001381 544 RQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNKICHWDKVLRELAAEALSALVKYDPEYFA 623 (1089)
Q Consensus 544 R~g~~p~GI~il~~~d~~~v~~r~~a~~~va~~va~~~~Y~~~li~~Ll~~~l~h~D~~iR~laa~aL~~L~~~~~~~~~ 623 (1089)
..+. .+....++.|.. .+.|.|..+|..++.||+++...
T Consensus 120 ~~~~----------------------------------~~~~~a~~~l~~-~~~D~~~~VR~~a~~aLg~~~~~------ 158 (280)
T PRK09687 120 KKNP----------------------------------LYSPKIVEQSQI-TAFDKSTNVRFAVAFALSVINDE------ 158 (280)
T ss_pred cccc----------------------------------ccchHHHHHHHH-HhhCCCHHHHHHHHHHHhccCCH------
Confidence 2111 112234444443 45688999999999999987532
Q ss_pred HHHHHHhccccCCCChhhHHHHHHHHHHHHHHHhcccccCChhHHHHHHhhhHHHHhhhhccCcchHHHHHHHHHHHHHh
Q 001381 624 NFILEKLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPADKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECI 703 (1089)
Q Consensus 624 ~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~l~~~~~~~~~~~~~~i~~i~~~~~~~~l~r~~~gelir~a~~~lI~~l 703 (1089)
..+|.|++.+.+.+..+||+++.+|+.+ ... ++..
T Consensus 159 -~ai~~L~~~L~d~~~~VR~~A~~aLg~~--~~~------~~~~------------------------------------ 193 (280)
T PRK09687 159 -AAIPLLINLLKDPNGDVRNWAAFALNSN--KYD------NPDI------------------------------------ 193 (280)
T ss_pred -HHHHHHHHHhcCCCHHHHHHHHHHHhcC--CCC------CHHH------------------------------------
Confidence 3678888888999999999999999886 110 0111
Q ss_pred hhcCCCCchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCcchhhhhHHHHHHHhCCCChhhhhhHHHHh
Q 001381 704 SLSFVSLPEKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLTDPNPAIRRGSALAL 783 (1089)
Q Consensus 704 s~~~lp~~~~~~~~~~~~L~~~L~~~~~~V~~aAa~Al~~l~~~y~~~~~~~~~~~~v~~~~~~L~s~~~~~r~G~a~aL 783 (1089)
...|...|.+++..||..|+.++..+-. .+.++.+++.|+++. .+..++.||
T Consensus 194 ---------------~~~L~~~L~D~~~~VR~~A~~aLg~~~~-----------~~av~~Li~~L~~~~--~~~~a~~AL 245 (280)
T PRK09687 194 ---------------REAFVAMLQDKNEEIRIEAIIGLALRKD-----------KRVLSVLIKELKKGT--VGDLIIEAA 245 (280)
T ss_pred ---------------HHHHHHHhcCCChHHHHHHHHHHHccCC-----------hhHHHHHHHHHcCCc--hHHHHHHHH
Confidence 1113333478889999999888865321 578888888888755 577899999
Q ss_pred hccchHhhhhhHHHHHHHHhhhccccCCCCCCCHHHHHHHHHHHHH
Q 001381 784 GVLPYELLANSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVS 829 (1089)
Q Consensus 784 G~lp~~~~~~~~~~i~~~L~~~~~~~~~~~~~d~e~R~~al~sL~~ 829 (1089)
|.+...- .+..|..... ...|.+.|..|+.+|.+
T Consensus 246 g~ig~~~-------a~p~L~~l~~-----~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 246 GELGDKT-------LLPVLDTLLY-----KFDDNEIITKAIDKLKR 279 (280)
T ss_pred HhcCCHh-------HHHHHHHHHh-----hCCChhHHHHHHHHHhc
Confidence 9997432 2333433321 23488999999988864
No 7
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.94 E-value=0.00024 Score=89.74 Aligned_cols=411 Identities=17% Similarity=0.146 Sum_probs=235.7
Q ss_pred HHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhC--cc---hhhhHHHHHHhhcCCC---CCCcchHHHHHHHHHHH
Q 001381 380 DILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLT--SS---LSEEVFSSVLELFSPG---EGDGSWHGGCLALAELA 451 (1089)
Q Consensus 380 e~vE~iI~~ll~~L~d~dt~vR~saAK~l~rI~~~L~--~~---~a~~vi~~il~~l~~~---~~~~~wHg~~LaLael~ 451 (1089)
..+.++..-|.+++.|++..||.+|+++++-++..++ ++ ..-.+++.++..+... .++..--+.+-+|.|++
T Consensus 155 ~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~ 234 (1075)
T KOG2171|consen 155 PHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELL 234 (1075)
T ss_pred hhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHH
Confidence 4588899999999999999999999999999999997 22 3456888888877543 22233455666666766
Q ss_pred hcCC-CCCCcccchHHHHHHhhhhhccccccCCChhhhhhhhHHHHHhhhccCcc---chhHHHHHHHHHHHHHHhcCCC
Q 001381 452 RRGL-LLPSSLPKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHT---DMRNILEQIAPHLLTVACYDRE 527 (1089)
Q Consensus 452 ~~~l-l~p~~l~~il~~i~~~L~f~~r~~~~svG~~VRDAacfi~WslaR~~~~~---~l~~~~~~l~~~Ll~~alfD~e 527 (1089)
-.-- ++-.++.+|+...+ +--++..++..+|=.|-=++=++++. .|. -..++...|+..++...+=- +
T Consensus 235 e~~pk~l~~~l~~ii~~~l------~Ia~n~~l~~~~R~~ALe~ivs~~e~-Ap~~~k~~~~~~~~lv~~~l~~mte~-~ 306 (1075)
T KOG2171|consen 235 ESEPKLLRPHLSQIIQFSL------EIAKNKELENSIRHLALEFLVSLSEY-APAMCKKLALLGHTLVPVLLAMMTEE-E 306 (1075)
T ss_pred hhchHHHHHHHHHHHHHHH------HHhhcccccHHHHHHHHHHHHHHHHh-hHHHhhhchhhhccHHHHHHHhcCCc-c
Confidence 5321 12223344443332 23456688888998764444445454 332 12245556665555433211 1
Q ss_pred chhhHHHHHHHHHHhcccCCCCCCccceecccccchhhhHHHHHHHHHHHH-hhh-c-chHHHHHHHHhCccCCCCHHHH
Q 001381 528 VNCRRAAAAAFQENVGRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIA-QYE-G-YLYPFVDELLYNKICHWDKVLR 604 (1089)
Q Consensus 528 ~~iRRaAsAAlQE~vGR~g~~p~GI~il~~~d~~~v~~r~~a~~~va~~va-~~~-~-Y~~~li~~Ll~~~l~h~D~~iR 604 (1089)
.. +|..- -|.+.-.|+-+ +-..| .+.-..+| .++ + -.+++++|+-. .+.+.|...|
T Consensus 307 ~D---------~ew~~--------~d~~ded~~~~--~~~~A-~~~lDrlA~~L~g~~v~p~~~~~l~~-~l~S~~w~~R 365 (1075)
T KOG2171|consen 307 DD---------DEWSN--------EDDLDEDDEET--PYRAA-EQALDRLALHLGGKQVLPPLFEALEA-MLQSTEWKER 365 (1075)
T ss_pred cc---------hhhcc--------ccccccccccC--cHHHH-HHHHHHHHhcCChhhehHHHHHHHHH-HhcCCCHHHH
Confidence 11 11100 01111122111 11111 11112222 332 3 34566777765 7889999999
Q ss_pred HHHHHHHHHHHccCchhhH---HHHHHHhccccCCCChhhHHHHHHHHHHHHHHHhcccccCChhHHHHHHhhhHHHHhh
Q 001381 605 ELAAEALSALVKYDPEYFA---NFILEKLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPADKQKIVAGIVPGIEKA 681 (1089)
Q Consensus 605 ~laa~aL~~L~~~~~~~~~---~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~l~~~~~~~~~~~~~~i~~i~~~~~~~ 681 (1089)
..|-.||+.++...++.|. +.++|..++.+.++...+|.+++.|++.+-..|. ++....-.+.++-..-.
T Consensus 366 ~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~-------p~iqk~~~e~l~~aL~~ 438 (1075)
T KOG2171|consen 366 HAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQ-------PEIQKKHHERLPPALIA 438 (1075)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhc-------HHHHHHHHHhccHHHHH
Confidence 9999999999998888775 5788888899999999999999999999875543 33322222222211101
Q ss_pred hhccCcchHHHHHHHHHHHHHhhhcCCCCchhhHHHHHH-HHHHhcCCCcHHHHHHHHHHHHHH-------HHHhhhccC
Q 001381 682 RLYRGKGGEIMRSAVSRFIECISLSFVSLPEKTKRSLLD-TLNENLRHPNSQIQNAAVKALKPF-------VQTYMVAAD 753 (1089)
Q Consensus 682 ~l~r~~~gelir~a~~~lI~~ls~~~lp~~~~~~~~~~~-~L~~~L~~~~~~V~~aAa~Al~~l-------~~~y~~~~~ 753 (1089)
.+-...+...-..|++.++.-...+.-+.-...++.++. .+...+......||+.++.|+... |..||
T Consensus 439 ~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~---- 514 (1075)
T KOG2171|consen 439 LLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYF---- 514 (1075)
T ss_pred HhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHH----
Confidence 111222345667778888754333221111223344444 444556788899999887777655 33333
Q ss_pred cchhhhhHHHHHHHhCC---CChhhhhhHH-HHhhcc----chHhhhhhHHHHHHHHhhhccccCCCCCCCHHHHHHHHH
Q 001381 754 SGVVGGISLKYMEQLTD---PNPAIRRGSA-LALGVL----PYELLANSWRDVLLKLCSCCLIEENPEDRDTEARVNAVR 825 (1089)
Q Consensus 754 ~~~~~~~v~~~~~~L~s---~~~~~r~G~a-~aLG~l----p~~~~~~~~~~i~~~L~~~~~~~~~~~~~d~e~R~~al~ 825 (1089)
+.+++.+.+-|+. .+-...||-. -.+|.+ .+..+.+.-.++++.|.... .+. ...|.-.|...+.
T Consensus 515 ----d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~-~~~--~~~dd~~~sy~~~ 587 (1075)
T KOG2171|consen 515 ----DRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQ-GSD--QDDDDPLRSYMIA 587 (1075)
T ss_pred ----HHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhc-ccc--hhhccccHHHHHH
Confidence 4455555555532 2233334432 122222 22333444456666655542 111 3446678899999
Q ss_pred HHHHHHhhhccc
Q 001381 826 GLVSVCETLTQS 837 (1089)
Q Consensus 826 sL~~i~~~~g~~ 837 (1089)
+.+.+|.-+|..
T Consensus 588 ~warmc~ilg~~ 599 (1075)
T KOG2171|consen 588 FWARMCRILGDD 599 (1075)
T ss_pred HHHHHHHHhchh
Confidence 999999988864
No 8
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.61 E-value=3e-05 Score=92.59 Aligned_cols=383 Identities=20% Similarity=0.204 Sum_probs=246.3
Q ss_pred HHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhCcchhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHHhcCCCCCC
Q 001381 380 DILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSLSEEVFSSVLELFSPGEGDGSWHGGCLALAELARRGLLLPS 459 (1089)
Q Consensus 380 e~vE~iI~~ll~~L~d~dt~vR~saAK~l~rI~~~L~~~~a~~vi~~il~~l~~~~~~~~wHg~~LaLael~~~~ll~p~ 459 (1089)
..+-.+|+.+++.+.-+...+|-+.++.+.-....+...-.+++.+-+.++++.. +
T Consensus 92 ~~~~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~~~-~----------------------- 147 (569)
T KOG1242|consen 92 PRPISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSGEYVLELLLELLTST-K----------------------- 147 (569)
T ss_pred cchhHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhccc-c-----------------------
Confidence 4467888999999999999999999998877766655444445555554444311 1
Q ss_pred cccchHHHHHHhhhhhccccccCCChhhhhhhhHHHHHhhhccCccchhHHHHHHHHHHHHHHhcCCCchhhH-HHHHHH
Q 001381 460 SLPKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRR-AAAAAF 538 (1089)
Q Consensus 460 ~l~~il~~i~~~L~f~~r~~~~svG~~VRDAacfi~WslaR~~~~~~l~~~~~~l~~~Ll~~alfD~e~~iRR-aAsAAl 538 (1089)
..=|+.+.|.+|.+.+.+.-..++ +.-+..-+..+.-|.+.--|| +++=|+
T Consensus 148 -------------------------~~~~~~aa~~~ag~v~g~~i~~~~---~~~~l~~l~~ai~dk~~~~~re~~~~a~ 199 (569)
T KOG1242|consen 148 -------------------------IAERAGAAYGLAGLVNGLGIESLK---EFGFLDNLSKAIIDKKSALNREAALLAF 199 (569)
T ss_pred -------------------------HHHHhhhhHHHHHHHcCcHHhhhh---hhhHHHHHHHHhcccchhhcHHHHHHHH
Confidence 123455667777777777644333 233344456777788887777 566665
Q ss_pred HHHhcccCCCCCCccceecccccchhhhHHHHHHHHHHHHhhhcchHHHHHHHHhCccCCCCHHHHHHHHHHHHHHHccC
Q 001381 539 QENVGRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNKICHWDKVLRELAAEALSALVKYD 618 (1089)
Q Consensus 539 QE~vGR~g~~p~GI~il~~~d~~~v~~r~~a~~~va~~va~~~~Y~~~li~~Ll~~~l~h~D~~iR~laa~aL~~L~~~~ 618 (1089)
+-+.|-.|. .++.|.-+++.+++. ++++.+.++|+.|..|...+...-
T Consensus 200 ~~~~~~Lg~-------------------------------~~EPyiv~~lp~il~-~~~d~~~~Vr~Aa~~a~kai~~~~ 247 (569)
T KOG1242|consen 200 EAAQGNLGP-------------------------------PFEPYIVPILPSILT-NFGDKINKVREAAVEAAKAIMRCL 247 (569)
T ss_pred HHHHHhcCC-------------------------------CCCchHHhhHHHHHH-HhhccchhhhHHHHHHHHHHHHhc
Confidence 555555553 134588899999997 899999999999999999999988
Q ss_pred chhhHHHHHHHhccccCCCChhhHHHHHHHHHHHHHHHhcccccCChhHHHHHHhhhHHHHhhhhccCcchHHHHHHHHH
Q 001381 619 PEYFANFILEKLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPADKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSR 698 (1089)
Q Consensus 619 ~~~~~~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~l~~~~~~~~~~~~~~i~~i~~~~~~~~l~r~~~gelir~a~~~ 698 (1089)
+.+-...++|.++..+....|.++-+++-.++-+...-. ......+.++++.+.+ .+... -. -+|+|.-.
T Consensus 248 ~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap-------~qLs~~lp~iiP~lse-vl~DT-~~-evr~a~~~ 317 (569)
T KOG1242|consen 248 SAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAP-------KQLSLCLPDLIPVLSE-VLWDT-KP-EVRKAGIE 317 (569)
T ss_pred CcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhch-------HHHHHHHhHhhHHHHH-HHccC-CH-HHHHHHHH
Confidence 888888899999988887799999999888886665432 2222223334444321 11111 12 34444333
Q ss_pred HHHHhh-hcCCCCchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhcc-CcchhhhhHHHHHHHhCCCChhhh
Q 001381 699 FIECIS-LSFVSLPEKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAA-DSGVVGGISLKYMEQLTDPNPAIR 776 (1089)
Q Consensus 699 lI~~ls-~~~lp~~~~~~~~~~~~L~~~L~~~~~~V~~aAa~Al~~l~~~y~~~~-~~~~~~~~v~~~~~~L~s~~~~~r 776 (1089)
-+..++ ... ..-+..+...|.+|+.+++..+. +++..+...-|... +....+-+++-+-+++...+....
T Consensus 318 ~l~~~~svid----N~dI~~~ip~Lld~l~dp~~~~~----e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~k 389 (569)
T KOG1242|consen 318 TLLKFGSVID----NPDIQKIIPTLLDALADPSCYTP----ECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIK 389 (569)
T ss_pred HHHHHHHhhc----cHHHHHHHHHHHHHhcCcccchH----HHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhh
Confidence 333322 111 12245677778899999986655 34444444332221 122346667777777765555666
Q ss_pred hhHHHHhhccchHh-----hhhhHHHHHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHhhhccccccccccCCcchhh
Q 001381 777 RGSALALGVLPYEL-----LANSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQSQENSLIHSGEDEIS 851 (1089)
Q Consensus 777 ~G~a~aLG~lp~~~-----~~~~~~~i~~~L~~~~~~~~~~~~~d~e~R~~al~sL~~i~~~~g~~~~~~~~~~~~~~~~ 851 (1089)
|+.+...|-+.+.. ..+.+.+++..|-... .+.++|+|.-+.++|+.+...+|..
T Consensus 390 r~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~------~d~~PEvR~vaarAL~~l~e~~g~~-------------- 449 (569)
T KOG1242|consen 390 RKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENL------DDAVPEVRAVAARALGALLERLGEV-------------- 449 (569)
T ss_pred hhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHh------cCCChhHHHHHHHHHHHHHHHHHhh--------------
Confidence 88888888887655 2344555566554443 2337999999999999999888753
Q ss_pred hhhhhHHHHHHHHHHhcccCCCCCCCCcchHHHHHHHHHHHHHH
Q 001381 852 LFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEICT 895 (1089)
Q Consensus 852 ~~~~~~~~i~~~Ll~~L~DYT~D~RGDVGSwVR~aa~~~l~~l~ 895 (1089)
.++.....+..++.+ .-++.-|..+.+++..++
T Consensus 450 ----~f~d~~p~l~e~~~~-------~k~~~~~~g~aq~l~evl 482 (569)
T KOG1242|consen 450 ----SFDDLIPELSETLTS-------EKSLVDRSGAAQDLSEVL 482 (569)
T ss_pred ----cccccccHHHHhhcc-------chhhhhhHHHhhhHHHHH
Confidence 123445555555533 334456788888887664
No 9
>PRK09687 putative lyase; Provisional
Probab=98.58 E-value=8.5e-06 Score=91.62 Aligned_cols=217 Identities=16% Similarity=0.136 Sum_probs=148.0
Q ss_pred ccCCCCHHHHHHHHHHHHHHHccCchhhHHHHHHHhccccCCCChhhHHHHHHHHHHHHHHHhcccccCChhHHHHHHhh
Q 001381 595 KICHWDKVLRELAAEALSALVKYDPEYFANFILEKLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPADKQKIVAGI 674 (1089)
Q Consensus 595 ~l~h~D~~iR~laa~aL~~L~~~~~~~~~~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~l~~~~~~~~~~~~~~i~~i 674 (1089)
.+.|.|..+|..|+.+|+++-.. .+++.+.+.+.+.|...|--++.+|+++-.. .....+....
T Consensus 31 ~L~d~d~~vR~~A~~aL~~~~~~-------~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~---------~~~~~~a~~~ 94 (280)
T PRK09687 31 LLDDHNSLKRISSIRVLQLRGGQ-------DVFRLAIELCSSKNPIERDIGADILSQLGMA---------KRCQDNVFNI 94 (280)
T ss_pred HHhCCCHHHHHHHHHHHHhcCcc-------hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC---------ccchHHHHHH
Confidence 44699999999999999988532 3566666777888999999889888886321 0001122222
Q ss_pred hHHH-HhhhhccCcchHHHHHHHHHHHHHhhhcCCCCchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccC
Q 001381 675 VPGI-EKARLYRGKGGEIMRSAVSRFIECISLSFVSLPEKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAAD 753 (1089)
Q Consensus 675 ~~~~-~~~~l~r~~~gelir~a~~~lI~~ls~~~lp~~~~~~~~~~~~L~~~L~~~~~~V~~aAa~Al~~l~~~y~~~~~ 753 (1089)
+..+ .+. ....+|.+++..++.++...... .......+...+.+++..||.+|+.|+..+-
T Consensus 95 L~~l~~~D------~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~-------- 156 (280)
T PRK09687 95 LNNLALED------KSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIN-------- 156 (280)
T ss_pred HHHHHhcC------CCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccC--------
Confidence 2222 211 23467877777777665322100 1223444666678899999999999995431
Q ss_pred cchhhhhHHHHHHHhCCCChhhhhhHHHHhhccchHhhhhhHHHHHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHhh
Q 001381 754 SGVVGGISLKYMEQLTDPNPAIRRGSALALGVLPYELLANSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCET 833 (1089)
Q Consensus 754 ~~~~~~~v~~~~~~L~s~~~~~r~G~a~aLG~lp~~~~~~~~~~i~~~L~~~~~~~~~~~~~d~e~R~~al~sL~~i~~~ 833 (1089)
....++.++..|++.++..|..++.+||.++.. -..+++.|+... .+.+.+.|..|+.+|+++
T Consensus 157 ---~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~-----~~~~~~~L~~~L------~D~~~~VR~~A~~aLg~~--- 219 (280)
T PRK09687 157 ---DEAAIPLLINLLKDPNGDVRNWAAFALNSNKYD-----NPDIREAFVAML------QDKNEEIRIEAIIGLALR--- 219 (280)
T ss_pred ---CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCC-----CHHHHHHHHHHh------cCCChHHHHHHHHHHHcc---
Confidence 156788899999999999999999999998432 123455566654 456789999999999873
Q ss_pred hccccccccccCCcchhhhhhhhHHHHHHHHHHhcccCCCCCCCCcchHHHHHHHHHHHHH
Q 001381 834 LTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEIC 894 (1089)
Q Consensus 834 ~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~L~DYT~D~RGDVGSwVR~aa~~~l~~l 894 (1089)
| ....++.|++.|+| || ||..++.++..+
T Consensus 220 -~---------------------~~~av~~Li~~L~~------~~----~~~~a~~ALg~i 248 (280)
T PRK09687 220 -K---------------------DKRVLSVLIKELKK------GT----VGDLIIEAAGEL 248 (280)
T ss_pred -C---------------------ChhHHHHHHHHHcC------Cc----hHHHHHHHHHhc
Confidence 1 13578888888876 44 577888888664
No 10
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.56 E-value=0.0075 Score=74.90 Aligned_cols=513 Identities=17% Similarity=0.162 Sum_probs=291.1
Q ss_pred hHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhCcchhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHHhc-CCCC
Q 001381 379 PDILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSLSEEVFSSVLELFSPGEGDGSWHGGCLALAELARR-GLLL 457 (1089)
Q Consensus 379 ~e~vE~iI~~ll~~L~d~dt~vR~saAK~l~rI~~~L~~~~a~~vi~~il~~l~~~~~~~~wHg~~LaLael~~~-~ll~ 457 (1089)
|+-=+.+...++..|..+-..||=-+-=++|-++...+.+....+++.+++.|.+........+....|++++|. |-=+
T Consensus 169 ~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~ 248 (1233)
T KOG1824|consen 169 PNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRF 248 (1233)
T ss_pred cchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchh
Confidence 444566778888999999999999999999999999999999999999999998877778889999999999987 4445
Q ss_pred CCcccchHHHHHHhhhhhccccccCCChhhhhhhhHHHHHhhhccCccchhHHHHHHHHHHHHHHhcCCCchhhHH--HH
Q 001381 458 PSSLPKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRA--AA 535 (1089)
Q Consensus 458 p~~l~~il~~i~~~L~f~~r~~~~svG~~VRDAacfi~WslaR~~~~~~l~~~~~~l~~~Ll~~alfD~e~~iRRa--As 535 (1089)
-.+++.++|.+.+-..-.+ .--.-.|.+.--++=+|.|+. |.++-||...+..-++----|||+.|--.- --
T Consensus 249 ~~h~~~ivp~v~~y~~~~e-----~~dDELrE~~lQale~fl~rc-p~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed 322 (1233)
T KOG1824|consen 249 GSHLDKIVPLVADYCNKIE-----EDDDELREYCLQALESFLRRC-PKEILPHVPEIINLCLSYISYDPNYNYDTEEDED 322 (1233)
T ss_pred hcccchhhHHHHHHhcccc-----cCcHHHHHHHHHHHHHHHHhC-hhhhcccchHHHHHHHHHhccCCCCCCCCccchh
Confidence 6789999999966542221 112557888888888888764 456778988888888877788887542110 00
Q ss_pred HHHHHHhcccCCCCCCccceecccccchhhhHHHHHHHHHHHHhhhcch----HHHHHHHHhCccCCCCHHHHHHHHHHH
Q 001381 536 AAFQENVGRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYL----YPFVDELLYNKICHWDKVLRELAAEAL 611 (1089)
Q Consensus 536 AAlQE~vGR~g~~p~GI~il~~~d~~~v~~r~~a~~~va~~va~~~~Y~----~~li~~Ll~~~l~h~D~~iR~laa~aL 611 (1089)
|-+-| +--+ ...=+.-+-.|-.++..|+.|-.-+...|..-.+|. +.+-..|+. ++..-...++--.-.++
T Consensus 323 ~~~~e--d~eD--de~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~-RfkEREEnVk~dvf~~y 397 (1233)
T KOG1824|consen 323 AMFLE--DEED--DEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALIS-RFKEREENVKADVFHAY 397 (1233)
T ss_pred hhhhh--cccc--chhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHH-HHHHHhhhHHHHHHHHH
Confidence 00000 0000 000011111122244444444333333222111111 111111111 11111222222222222
Q ss_pred HHHHcc------------------Cc---hhhHH---HHHHHhccccCCCChhhHHHHHHHHHHHHHHHhcccccCChhH
Q 001381 612 SALVKY------------------DP---EYFAN---FILEKLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPADK 667 (1089)
Q Consensus 612 ~~L~~~------------------~~---~~~~~---~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~l~~~~~~~~~~~ 667 (1089)
-.+-++ .| ..+.+ .++..+-+.+.+..+-+|.|+++-+.+++..+++..
T Consensus 398 i~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l------- 470 (1233)
T KOG1824|consen 398 IALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGAL------- 470 (1233)
T ss_pred HHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchh-------
Confidence 222111 01 11111 122222233445556699999999999998876432
Q ss_pred HHHHHhhhHHHHhhhhccCcchHHHHHHHHHHHHHhhhcCCCCchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Q 001381 668 QKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLPEKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQT 747 (1089)
Q Consensus 668 ~~~i~~i~~~~~~~~l~r~~~gelir~a~~~lI~~ls~~~lp~~~~~~~~~~~~L~~~L~~~~~~V~~aAa~Al~~l~~~ 747 (1089)
.+++..+++.+.-.=.=+.....+...+...++..+.....+.-..++.....++-.+...+...|-..|--....+++.
T Consensus 471 ~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkv 550 (1233)
T KOG1824|consen 471 AQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKV 550 (1233)
T ss_pred hhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHH
Confidence 22333334433211000122344566676777766664332211124445555666666666666554333333333332
Q ss_pred hhhccC------cchhhhhHHHHHHHhC--CCChhhhhhHHHHhhccchHh---hhhhHHHHHHHHhhhccccCCCCCCC
Q 001381 748 YMVAAD------SGVVGGISLKYMEQLT--DPNPAIRRGSALALGVLPYEL---LANSWRDVLLKLCSCCLIEENPEDRD 816 (1089)
Q Consensus 748 y~~~~~------~~~~~~~v~~~~~~L~--s~~~~~r~G~a~aLG~lp~~~---~~~~~~~i~~~L~~~~~~~~~~~~~d 816 (1089)
.-...+ ......++.--++.|+ +.+.-+|..++.++|.+-..+ +......++..|++-++ .
T Consensus 551 irpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~--------n 622 (1233)
T KOG1824|consen 551 IRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLG--------N 622 (1233)
T ss_pred hcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHh--------c
Confidence 211111 1112444445555564 556667777777777765433 34455667777766643 2
Q ss_pred HHHHHHHHHHHHHHHhhhccccccccccCCcchhhhhhhhHHHHHHHHHHhcccCCCCCCCCcchHHHHHHHHHHHHHHH
Q 001381 817 TEARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEICTY 896 (1089)
Q Consensus 817 ~e~R~~al~sL~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~L~DYT~D~RGDVGSwVR~aa~~~l~~l~~ 896 (1089)
--||-.|++|+..|..+.-.. . .......++..+...+--- -+-.|.+++.++..+..
T Consensus 623 EiTRl~AvkAlt~Ia~S~l~i-------------~-l~~~l~~il~~l~~flrK~--------~r~lr~~~l~a~~~L~~ 680 (1233)
T KOG1824|consen 623 EITRLTAVKALTLIAMSPLDI-------------D-LSPVLTEILPELASFLRKN--------QRALRLATLTALDKLVK 680 (1233)
T ss_pred hhHHHHHHHHHHHHHhcccee-------------e-hhhhHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
Confidence 368999999999887431110 1 1245666777666655221 23356777777766542
Q ss_pred HhhccCCCCCCCCCccccccCCCCccccccccCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhc
Q 001381 897 ILCKRDFVPSPEKPQEVKSELPGNVTAEKTLFDANLATNLVAGIVKQAVEKMDKLREAAAKVLRRILYN 965 (1089)
Q Consensus 897 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~llrq~~EkiD~vR~~A~~~L~~l~~~ 965 (1089)
-+ ...+....++.++.-+.-+..|-.-++-+.|..+|..++..
T Consensus 681 ~~--------------------------~~~~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~ 723 (1233)
T KOG1824|consen 681 NY--------------------------SDSIPAELLEAVLVELPPLISESDLHVTQLAVAFLTTLAII 723 (1233)
T ss_pred HH--------------------------hccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhc
Confidence 21 23355677888888888888999999999998888877654
No 11
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.55 E-value=0.00026 Score=95.64 Aligned_cols=458 Identities=16% Similarity=0.099 Sum_probs=245.7
Q ss_pred HHHHHHHhhcC-CCChhHHHHHHHHHHHHHhhhCcchhh-----hHHHHHHhhcCCCCC-------Ccch-HHHHHHHHH
Q 001381 384 EIIEILLSGLR-DTDTVVRWSAAKGIGRITSCLTSSLSE-----EVFSSVLELFSPGEG-------DGSW-HGGCLALAE 449 (1089)
Q Consensus 384 ~iI~~ll~~L~-d~dt~vR~saAK~l~rI~~~L~~~~a~-----~vi~~il~~l~~~~~-------~~~w-Hg~~LaLae 449 (1089)
.+|+.|+.-|+ +.+..+|..||.+|+.|+.. ..+..+ -.|+.+++.+..... .... .-+.-+|+.
T Consensus 231 GaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~-s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsN 309 (2102)
T PLN03200 231 GAVKQLLKLLGQGNEVSVRAEAAGALEALSSQ-SKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALAN 309 (2102)
T ss_pred CCHHHHHHHHccCCChHHHHHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHH
Confidence 45677777775 46679999999999999974 233322 356677776653211 1111 226678888
Q ss_pred HHhcCCC-CC--------CcccchHHHHHHhhhhhccccccCCChhhh--hhhhHHHHHhhhccCccchhHHHHHHHHHH
Q 001381 450 LARRGLL-LP--------SSLPKVVPVIVKALHYDIRRGSHSVGSHVR--DAAAYVCWAFGRAYCHTDMRNILEQIAPHL 518 (1089)
Q Consensus 450 l~~~~ll-~p--------~~l~~il~~i~~~L~f~~r~~~~svG~~VR--DAacfi~WslaR~~~~~~l~~~~~~l~~~L 518 (1089)
+++-+.- +| .+...++-...-++.|-.+....+ ...++ |+ -=++|.|++-.......+..+.+...|
T Consensus 310 Icgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~-~~~~~~i~~-~~v~~~LV~Llr~k~p~~vqe~V~eAL 387 (2102)
T PLN03200 310 ICGGMSALILYLGELSESPRSPAPIADTLGALAYALMVFDSS-AESTRAFDP-TVIEQILVKLLKPRDTKLVQERIIEAL 387 (2102)
T ss_pred HhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCc-hhhhhhccc-cccHHHHHHHhCCCCCchhHHHHHHHH
Confidence 8875410 00 011111111112222221111111 01111 11 114688777766433222112222221
Q ss_pred --------HHHHhcC-------------CCchhhHHHHHHHHHHh----------cccCCCCCCccceecccccchhhhH
Q 001381 519 --------LTVACYD-------------REVNCRRAAAAAFQENV----------GRQGNYPHGIDIVNTADYFSLSSRV 567 (1089)
Q Consensus 519 --------l~~alfD-------------~e~~iRRaAsAAlQE~v----------GR~g~~p~GI~il~~~d~~~v~~r~ 567 (1089)
+...+.| .+..+|..+..++..+. ++.|.+|.=+..+..- ....+.
T Consensus 388 asl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~---s~~iQ~ 464 (2102)
T PLN03200 388 ASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLS---SEQQQE 464 (2102)
T ss_pred HHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCC---CHHHHH
Confidence 1112223 23568888777765443 4445454333334332 122233
Q ss_pred HHHHHHHHHHHhhhcch-----HHHHHHHHhCccCCCCHHHHHHHHHHHHHHHccCch--hhH--HHHHHHhccccCCCC
Q 001381 568 YSYLHVAVFIAQYEGYL-----YPFVDELLYNKICHWDKVLRELAAEALSALVKYDPE--YFA--NFILEKLTPFTLSTD 638 (1089)
Q Consensus 568 ~a~~~va~~va~~~~Y~-----~~li~~Ll~~~l~h~D~~iR~laa~aL~~L~~~~~~--~~~--~~vlp~Ll~~l~~~d 638 (1089)
.+...++...+.-++-+ ...|+.|++ .|.+.|..+|+-|+.+|++++...+. .+. ..++|.|++.+.+.+
T Consensus 465 ~A~~~L~nLa~~ndenr~aIieaGaIP~LV~-LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd 543 (2102)
T PLN03200 465 YAVALLAILTDEVDESKWAITAAGGIPPLVQ-LLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGG 543 (2102)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHCCCHHHHHH-HHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCC
Confidence 33222222211111111 124555554 56688999999999999999974332 122 146888888888888
Q ss_pred hhhHHHHHHHHHHHHHHHhcccccCChhHHHHHHhhhHHHHhhhhccCcchHHHHHHHHHHHHHhhhcCCCCchhh----
Q 001381 639 LCTRHGATLAAGEVVLALCKYDYALPADKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLPEKT---- 714 (1089)
Q Consensus 639 ~~~RHG~lLalaevl~~l~~~~~~~~~~~~~~i~~i~~~~~~~~l~r~~~gelir~a~~~lI~~ls~~~lp~~~~~---- 714 (1089)
...+.-++.+|+.++..- +++. +..++.. +.+.+.... ..+.+.++.+.... +..+..
T Consensus 544 ~~~q~~Aa~AL~nLi~~~-------d~~~---I~~Lv~L------Llsdd~~~~-~~aL~vLgnIlsl~-~~~d~~~~g~ 605 (2102)
T PLN03200 544 PKGQEIAAKTLTKLVRTA-------DAAT---ISQLTAL------LLGDLPESK-VHVLDVLGHVLSVA-SLEDLVREGS 605 (2102)
T ss_pred HHHHHHHHHHHHHHHhcc-------chhH---HHHHHHH------hcCCChhHH-HHHHHHHHHHHhhc-chhHHHHHhh
Confidence 899988888888876421 1222 2222222 333333333 33455555442210 111000
Q ss_pred -HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCcchhhhhHHHHHHHhCCCChhhhhhHHHHhhccchHhhhh
Q 001381 715 -KRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLTDPNPAIRRGSALALGVLPYELLAN 793 (1089)
Q Consensus 715 -~~~~~~~L~~~L~~~~~~V~~aAa~Al~~l~~~y~~~~~~~~~~~~v~~~~~~L~s~~~~~r~G~a~aLG~lp~~~~~~ 793 (1089)
...-++.|.+-|.+.++.+++.|+.++..++..--...........++-+++.|++++...++..|.||+.+.......
T Consensus 606 ~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~ 685 (2102)
T PLN03200 606 AANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKEN 685 (2102)
T ss_pred hccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHH
Confidence 0123455667779999999999999998776521000000012577889999999888889999999999987533222
Q ss_pred hH-----HHHHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHhhhccccccccccCCcchhhhhhhhHHHHHHHHHHhc
Q 001381 794 SW-----RDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKAL 868 (1089)
Q Consensus 794 ~~-----~~i~~~L~~~~~~~~~~~~~d~e~R~~al~sL~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~L 868 (1089)
+. ..++..|+..+ ...+.+.+..|+.+|+.++..-.. ...+ ....++..|+.-|
T Consensus 686 q~~~~v~~GaV~pL~~LL------~~~d~~v~e~Al~ALanLl~~~e~------------~~ei---~~~~~I~~Lv~lL 744 (2102)
T PLN03200 686 RKVSYAAEDAIKPLIKLA------KSSSIEVAEQAVCALANLLSDPEV------------AAEA---LAEDIILPLTRVL 744 (2102)
T ss_pred HHHHHHHcCCHHHHHHHH------hCCChHHHHHHHHHHHHHHcCchH------------HHHH---HhcCcHHHHHHHH
Confidence 21 12445566665 345789999999999998753110 0011 1123456666666
Q ss_pred ccCCCCCCCCcchHHHHHHHHHHHHHH
Q 001381 869 DDYSVDNRGDVGSWVREAAVDGLEICT 895 (1089)
Q Consensus 869 ~DYT~D~RGDVGSwVR~aa~~~l~~l~ 895 (1089)
.+=| .++|+.|..++.+++
T Consensus 745 r~G~--------~~~k~~Aa~AL~~L~ 763 (2102)
T PLN03200 745 REGT--------LEGKRNAARALAQLL 763 (2102)
T ss_pred HhCC--------hHHHHHHHHHHHHHH
Confidence 4422 358999999997764
No 12
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.52 E-value=6.4e-05 Score=91.46 Aligned_cols=430 Identities=18% Similarity=0.171 Sum_probs=258.7
Q ss_pred hHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhCcchhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHHhcCCCCC
Q 001381 379 PDILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSLSEEVFSSVLELFSPGEGDGSWHGGCLALAELARRGLLLP 458 (1089)
Q Consensus 379 ~e~vE~iI~~ll~~L~d~dt~vR~saAK~l~rI~~~L~~~~a~~vi~~il~~l~~~~~~~~wHg~~LaLael~~~~ll~p 458 (1089)
|+.+--+++.+...|.|++..+|..|-+.+++|. .+++++.+++.|...+++. ++.....+++++..+.+.. |
T Consensus 74 ~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~---~~~~~~~l~~~v~~ll~~~-~~~VRk~A~~~l~~i~~~~---p 146 (526)
T PF01602_consen 74 PELLILIINSLQKDLNSPNPYIRGLALRTLSNIR---TPEMAEPLIPDVIKLLSDP-SPYVRKKAALALLKIYRKD---P 146 (526)
T ss_dssp HHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH----SHHHHHHHHHHHHHHHHSS-SHHHHHHHHHHHHHHHHHC---H
T ss_pred hhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc---ccchhhHHHHHHHHHhcCC-chHHHHHHHHHHHHHhccC---H
Confidence 4667779999999999999999999999999998 7799999999999999754 3344567899999998873 6
Q ss_pred Ccccc-hHHHHHHhhhhhccccccCCChhhhhhhhHHHHHhhhccCccchhHHHHHHHHHHHHHHhcCCCchhhHHHHHH
Q 001381 459 SSLPK-VVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAAAAA 537 (1089)
Q Consensus 459 ~~l~~-il~~i~~~L~f~~r~~~~svG~~VRDAacfi~WslaR~~~~~~l~~~~~~l~~~Ll~~alfD~e~~iRRaAsAA 537 (1089)
+.++. ++|.+.+.|.-.. ..|+=+|+.++-.+ .+.+....+.+..++..| ...+-+++.-.+......
T Consensus 147 ~~~~~~~~~~l~~lL~d~~--------~~V~~~a~~~l~~i--~~~~~~~~~~~~~~~~~L-~~~l~~~~~~~q~~il~~ 215 (526)
T PF01602_consen 147 DLVEDELIPKLKQLLSDKD--------PSVVSAALSLLSEI--KCNDDSYKSLIPKLIRIL-CQLLSDPDPWLQIKILRL 215 (526)
T ss_dssp CCHHGGHHHHHHHHTTHSS--------HHHHHHHHHHHHHH--HCTHHHHTTHHHHHHHHH-HHHHTCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccCCc--------chhHHHHHHHHHHH--ccCcchhhhhHHHHHHHh-hhcccccchHHHHHHHHH
Confidence 77766 6888888873332 45888888888777 333322223444444433 333355555555555554
Q ss_pred HHHHhcccCCCCCC----ccceecccccchhhhHHHHHHH----HHHHHhh---hcchHHHHHHHHhCccCCCCHHHHHH
Q 001381 538 FQENVGRQGNYPHG----IDIVNTADYFSLSSRVYSYLHV----AVFIAQY---EGYLYPFVDELLYNKICHWDKVLREL 606 (1089)
Q Consensus 538 lQE~vGR~g~~p~G----I~il~~~d~~~v~~r~~a~~~v----a~~va~~---~~Y~~~li~~Ll~~~l~h~D~~iR~l 606 (1089)
+ +++...... -.++..+. ...+++...| ...+..+ +.+...+++.|.. .+.+.|.++|..
T Consensus 216 l----~~~~~~~~~~~~~~~~i~~l~----~~l~s~~~~V~~e~~~~i~~l~~~~~~~~~~~~~L~~-lL~s~~~nvr~~ 286 (526)
T PF01602_consen 216 L----RRYAPMEPEDADKNRIIEPLL----NLLQSSSPSVVYEAIRLIIKLSPSPELLQKAINPLIK-LLSSSDPNVRYI 286 (526)
T ss_dssp H----TTSTSSSHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHH-HHTSSSHHHHHH
T ss_pred H----HhcccCChhhhhHHHHHHHHH----HHhhccccHHHHHHHHHHHHhhcchHHHHhhHHHHHH-Hhhcccchhehh
Confidence 4 344321000 00111110 1111111111 2222222 2356677888876 667999999999
Q ss_pred HHHHHHHHHccCchhhHHHHHHHhccccCCCChhhHHHHHHHHHHHHHHHhcccccCChhHHHHHHhhhHHHHhhhhccC
Q 001381 607 AAEALSALVKYDPEYFANFILEKLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPADKQKIVAGIVPGIEKARLYRG 686 (1089)
Q Consensus 607 aa~aL~~L~~~~~~~~~~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~l~~~~~~~~~~~~~~i~~i~~~~~~~~l~r~ 686 (1089)
+.++|..++...+..+.. ....+.-...+.|..+|-=++-.+..+.. +..... +++.+.+- .+.
T Consensus 287 ~L~~L~~l~~~~~~~v~~-~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~----------~~n~~~---Il~eL~~~--l~~ 350 (526)
T PF01602_consen 287 ALDSLSQLAQSNPPAVFN-QSLILFFLLYDDDPSIRKKALDLLYKLAN----------ESNVKE---ILDELLKY--LSE 350 (526)
T ss_dssp HHHHHHHHCCHCHHHHGT-HHHHHHHHHCSSSHHHHHHHHHHHHHH------------HHHHHH---HHHHHHHH--HHH
T ss_pred HHHHHHHhhcccchhhhh-hhhhhheecCCCChhHHHHHHHHHhhccc----------ccchhh---HHHHHHHH--HHh
Confidence 999999999988655542 22222222347777888766555555543 222222 33333211 011
Q ss_pred cchHHHHHHHHHHHHHhhhcCCCCchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCcchhhhhHHHHHH
Q 001381 687 KGGEIMRSAVSRFIECISLSFVSLPEKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYME 766 (1089)
Q Consensus 687 ~~gelir~a~~~lI~~ls~~~lp~~~~~~~~~~~~L~~~L~~~~~~V~~aAa~Al~~l~~~y~~~~~~~~~~~~v~~~~~ 766 (1089)
....-++..++.-|..++....+.....++.+.+ .+....+.+...+...+..+...+ .+.....+..+++
T Consensus 351 ~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~----ll~~~~~~~~~~~~~~i~~ll~~~-----~~~~~~~l~~L~~ 421 (526)
T PF01602_consen 351 LSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLK----LLEISGDYVSNEIINVIRDLLSNN-----PELREKILKKLIE 421 (526)
T ss_dssp C--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHH----HHHCTGGGCHCHHHHHHHHHHHHS-----TTTHHHHHHHHHH
T ss_pred ccchhhhhhHHHHHHHHHhccCchHHHHHHHHHH----hhhhccccccchHHHHHHHHhhcC-----hhhhHHHHHHHHH
Confidence 1112255666666666665332222233444444 445566777777777777776653 2234677888888
Q ss_pred HhC-CCChhhhhhHHHHhhccchHhhh-hhHHHHHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHhhhcccccccccc
Q 001381 767 QLT-DPNPAIRRGSALALGVLPYELLA-NSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQSQENSLIH 844 (1089)
Q Consensus 767 ~L~-s~~~~~r~G~a~aLG~lp~~~~~-~~~~~i~~~L~~~~~~~~~~~~~d~e~R~~al~sL~~i~~~~g~~~~~~~~~ 844 (1089)
.+. -..+..+++.+..+|-....... .....++..++... .....++|..++.++.++..+.+..
T Consensus 422 ~l~~~~~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~l~~~~------~~~~~~vk~~ilt~~~Kl~~~~~~~------- 488 (526)
T PF01602_consen 422 LLEDISSPEALAAAIWILGEYGELIENTESAPDILRSLIENF------IEESPEVKLQILTALAKLFKRNPEN------- 488 (526)
T ss_dssp HHTSSSSHHHHHHHHHHHHHHCHHHTTTTHHHHHHHHHHHHH------TTSHHHHHHHHHHHHHHHHHHSCST-------
T ss_pred HHHHhhHHHHHHHHHhhhcccCCcccccccHHHHHHHHHHhh------ccccHHHHHHHHHHHHHHHhhCCch-------
Confidence 886 45677899999999998766543 23445566665554 2345789999999999987653321
Q ss_pred CCcchhhhhhhhHHHHHHHHHHhcc--cCCCCCCCCcchHHHHHHHHHH
Q 001381 845 SGEDEISLFHLIKNEVMTSLFKALD--DYSVDNRGDVGSWVREAAVDGL 891 (1089)
Q Consensus 845 ~~~~~~~~~~~~~~~i~~~Ll~~L~--DYT~D~RGDVGSwVR~aa~~~l 891 (1089)
.....+++.+..... |-..| ||.-|..-+
T Consensus 489 ----------~~~~~i~~~~~~~~~~~s~~~e--------vr~Ra~~y~ 519 (526)
T PF01602_consen 489 ----------EVQNEILQFLLSLATEDSSDPE--------VRDRAREYL 519 (526)
T ss_dssp ----------THHHHHHHHHHCHHHHS-SSHH--------HHHHHHHHH
T ss_pred ----------hhHHHHHHHHHHHhccCCCCHH--------HHHHHHHHH
Confidence 122356666665554 33333 787776655
No 13
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.51 E-value=6.7e-06 Score=106.48 Aligned_cols=204 Identities=21% Similarity=0.128 Sum_probs=135.1
Q ss_pred ccCCCCHHHHHHHHHHHHHHHccCchhhHHHHHHHhccccCCCChhhHHHHHHHHHHHHHHHhcccccCChhHHHHHHhh
Q 001381 595 KICHWDKVLRELAAEALSALVKYDPEYFANFILEKLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPADKQKIVAGI 674 (1089)
Q Consensus 595 ~l~h~D~~iR~laa~aL~~L~~~~~~~~~~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~l~~~~~~~~~~~~~~i~~i 674 (1089)
.+.+.|+.+|..|+++|+.+...++ +.++..+.+.|..+|..++-+|+++-. .. . +
T Consensus 692 ~L~~~d~~VR~~A~~aL~~~~~~~~--------~~l~~~L~D~d~~VR~~Av~aL~~~~~----------~~---~---l 747 (897)
T PRK13800 692 HLGSPDPVVRAAALDVLRALRAGDA--------ALFAAALGDPDHRVRIEAVRALVSVDD----------VE---S---V 747 (897)
T ss_pred HhcCCCHHHHHHHHHHHHhhccCCH--------HHHHHHhcCCCHHHHHHHHHHHhcccC----------cH---H---H
Confidence 3456889999999999998754332 234556788889999988888887410 11 1 1
Q ss_pred hHHHHhhhhccCcchHHHHHHHHHHHHHhhhcCCCCchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCc
Q 001381 675 VPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLPEKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADS 754 (1089)
Q Consensus 675 ~~~~~~~~l~r~~~gelir~a~~~lI~~ls~~~lp~~~~~~~~~~~~L~~~L~~~~~~V~~aAa~Al~~l~~~y~~~~~~ 754 (1089)
...+.+ ....+|.+++.-+..+..... .-...|...+.+++..||.+|+.+|..+-. +
T Consensus 748 ~~~l~D-------~~~~VR~~aa~aL~~~~~~~~--------~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~------~- 805 (897)
T PRK13800 748 AGAATD-------ENREVRIAVAKGLATLGAGGA--------PAGDAVRALTGDPDPLVRAAALAALAELGC------P- 805 (897)
T ss_pred HHHhcC-------CCHHHHHHHHHHHHHhccccc--------hhHHHHHHHhcCCCHHHHHHHHHHHHhcCC------c-
Confidence 111111 234677777777765543110 012335556688999999999999875521 0
Q ss_pred chhhhhHHHHHHHhCCCChhhhhhHHHHhhccchHhhhhhHHHHHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHhhh
Q 001381 755 GVVGGISLKYMEQLTDPNPAIRRGSALALGVLPYELLANSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETL 834 (1089)
Q Consensus 755 ~~~~~~v~~~~~~L~s~~~~~r~G~a~aLG~lp~~~~~~~~~~i~~~L~~~~~~~~~~~~~d~e~R~~al~sL~~i~~~~ 834 (1089)
...+..++..|++.++..|.+++.+||.++..- .+..|+.++ .+.+...|+.|+.+|+.+-
T Consensus 806 ---~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~~-------a~~~L~~~L------~D~~~~VR~~A~~aL~~~~--- 866 (897)
T PRK13800 806 ---PDDVAAATAALRASAWQVRQGAARALAGAAADV-------AVPALVEAL------TDPHLDVRKAAVLALTRWP--- 866 (897)
T ss_pred ---chhHHHHHHHhcCCChHHHHHHHHHHHhccccc-------hHHHHHHHh------cCCCHHHHHHHHHHHhccC---
Confidence 234456777888889999999999999987431 234444443 4567899999999998740
Q ss_pred ccccccccccCCcchhhhhhhhHHHHHHHHHHhcccCCCCCCCCcchHHHHHHHHHHH
Q 001381 835 TQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLE 892 (1089)
Q Consensus 835 g~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~L~DYT~D~RGDVGSwVR~aa~~~l~ 892 (1089)
| .....+.|..+++|=. +.||.+|.++|.
T Consensus 867 ~---------------------~~~a~~~L~~al~D~d--------~~Vr~~A~~aL~ 895 (897)
T PRK13800 867 G---------------------DPAARDALTTALTDSD--------ADVRAYARRALA 895 (897)
T ss_pred C---------------------CHHHHHHHHHHHhCCC--------HHHHHHHHHHHh
Confidence 1 1235667778887642 349999999985
No 14
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.49 E-value=1e-05 Score=104.69 Aligned_cols=85 Identities=27% Similarity=0.307 Sum_probs=62.5
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCcchhhhhHHHHHHHhCCCChhhhhhHHHHhhccchHhhhhhHHHHHHH
Q 001381 722 LNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLTDPNPAIRRGSALALGVLPYELLANSWRDVLLK 801 (1089)
Q Consensus 722 L~~~L~~~~~~V~~aAa~Al~~l~~~y~~~~~~~~~~~~v~~~~~~L~s~~~~~r~G~a~aLG~lp~~~~~~~~~~i~~~ 801 (1089)
+...|.+++..||.+|+.||..+-. .+.++.++..|++.+..+|+.++.+||.+.- .+ .....
T Consensus 812 l~~aL~d~d~~VR~~Aa~aL~~l~~-----------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~---~~---~a~~~ 874 (897)
T PRK13800 812 ATAALRASAWQVRQGAARALAGAAA-----------DVAVPALVEALTDPHLDVRKAAVLALTRWPG---DP---AARDA 874 (897)
T ss_pred HHHHhcCCChHHHHHHHHHHHhccc-----------cchHHHHHHHhcCCCHHHHHHHHHHHhccCC---CH---HHHHH
Confidence 4556688889999999999975421 4567888888999999999999999999731 11 12233
Q ss_pred HhhhccccCCCCCCCHHHHHHHHHHHHH
Q 001381 802 LCSCCLIEENPEDRDTEARVNAVRGLVS 829 (1089)
Q Consensus 802 L~~~~~~~~~~~~~d~e~R~~al~sL~~ 829 (1089)
|..+. .+.|.+.|+.|.++|..
T Consensus 875 L~~al------~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 875 LTTAL------TDSDADVRAYARRALAH 896 (897)
T ss_pred HHHHH------hCCCHHHHHHHHHHHhh
Confidence 43333 46689999999999864
No 15
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.49 E-value=0.0018 Score=77.70 Aligned_cols=509 Identities=18% Similarity=0.221 Sum_probs=268.5
Q ss_pred HHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhCcch---hhhHHHHHHhhcCCCCCCcchH--HHHHHHHHHHhcCC
Q 001381 381 ILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSL---SEEVFSSVLELFSPGEGDGSWH--GGCLALAELARRGL 455 (1089)
Q Consensus 381 ~vE~iI~~ll~~L~d~dt~vR~saAK~l~rI~~~L~~~~---a~~vi~~il~~l~~~~~~~~wH--g~~LaLael~~~~l 455 (1089)
.+...++.++.--+|.+..||=...++|.-+.+..|..+ -+.||++++...++.+.+.+.- ...|++||----.-
T Consensus 212 ~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~ 291 (885)
T KOG2023|consen 212 HIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKE 291 (885)
T ss_pred HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHH
Confidence 355555555554579999999999999999999887654 4789999998886543333321 13345555221111
Q ss_pred CCCCcccchHHHHHHhhhhhcccc---------------------------ccCCCh----------hhhhhhhHHHHHh
Q 001381 456 LLPSSLPKVVPVIVKALHYDIRRG---------------------------SHSVGS----------HVRDAAAYVCWAF 498 (1089)
Q Consensus 456 l~p~~l~~il~~i~~~L~f~~r~~---------------------------~~svG~----------~VRDAacfi~Wsl 498 (1089)
.+.++|++++|+++.++.|..-.. .+..|+ ..-|--.|.-|.+
T Consensus 292 ~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNL 371 (885)
T KOG2023|consen 292 VLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNL 371 (885)
T ss_pred HHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccH
Confidence 234678999999999988864321 111222 0125566777888
Q ss_pred hhccCc--cchh----HHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHh-cc-cCCCCCCc--------------ccee
Q 001381 499 GRAYCH--TDMR----NILEQIAPHLLTVACYDREVNCRRAAAAAFQENV-GR-QGNYPHGI--------------DIVN 556 (1089)
Q Consensus 499 aR~~~~--~~l~----~~~~~l~~~Ll~~alfD~e~~iRRaAsAAlQE~v-GR-~g~~p~GI--------------~il~ 556 (1089)
-++-.. +.|. .-+-.++..++...++..++-+|.|+.=||+.+- |- .|.+||-= .+++
T Consensus 372 RkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVR 451 (885)
T KOG2023|consen 372 RKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVR 451 (885)
T ss_pred hhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCcccee
Confidence 655443 1222 2344566778899999999999999999987654 33 47777642 2233
Q ss_pred cccccchhhhHHHHHHHHHHHHhh--hcchHHHHHHHHhCccCCCCHHHHHHHHHHHHHHHccCchhhH---HHHHHHhc
Q 001381 557 TADYFSLSSRVYSYLHVAVFIAQY--EGYLYPFVDELLYNKICHWDKVLRELAAEALSALVKYDPEYFA---NFILEKLT 631 (1089)
Q Consensus 557 ~~d~~~v~~r~~a~~~va~~va~~--~~Y~~~li~~Ll~~~l~h~D~~iR~laa~aL~~L~~~~~~~~~---~~vlp~Ll 631 (1089)
.+.-+++++- ++.+.+- .+|..+++..|++ .+-+.+..+++.|..|++-+-....+.+. +.++.++.
T Consensus 452 sITCWTLsRy-------s~wv~~~~~~~~f~pvL~~ll~-~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~ 523 (885)
T KOG2023|consen 452 SITCWTLSRY-------SKWVVQDSRDEYFKPVLEGLLR-RLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLV 523 (885)
T ss_pred eeeeeeHhhh-------hhhHhcCChHhhhHHHHHHHHH-HHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 2322333221 2333322 3799999999997 67788999999999999988766554333 23444443
Q ss_pred ---cccCCCChhhHHHHHHHHHHHH-HHHhcccccCChhHHHHHHhhhHHHHhhhhccCcchHH--HHHHHHHHHHHhhh
Q 001381 632 ---PFTLSTDLCTRHGATLAAGEVV-LALCKYDYALPADKQKIVAGIVPGIEKARLYRGKGGEI--MRSAVSRFIECISL 705 (1089)
Q Consensus 632 ---~~l~~~d~~~RHG~lLalaevl-~~l~~~~~~~~~~~~~~i~~i~~~~~~~~l~r~~~gel--ir~a~~~lI~~ls~ 705 (1089)
++.+..++.+-.-++=.+|+-+ ++|.+ +.-++-+ +.+-+.|-.+.+....++ +-+-.+..-.++..
T Consensus 524 ~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~------~~YiqiL--mPPLi~KW~~lsd~DKdLfPLLEClSsia~AL~~ 595 (885)
T KOG2023|consen 524 FAFGKYQKKNLLILYDAIGTLADSVGHALNK------PAYIQIL--MPPLIEKWELLSDSDKDLFPLLECLSSIASALGV 595 (885)
T ss_pred HHHHHHhhcceehHHHHHHHHHHHHHHhcCc------HHHHHHh--ccHHHHHHHhcCcccchHHHHHHHHHHHHHHHhc
Confidence 2334556655555554454433 22321 1101100 111111111111111111 11111111111221
Q ss_pred cCCCCchhhHHHHHHHHHHhc------------CCCcHHHHHHHHHHHHHHHHHhhhccCcc---hhhhhHHHHHHHhCC
Q 001381 706 SFVSLPEKTKRSLLDTLNENL------------RHPNSQIQNAAVKALKPFVQTYMVAADSG---VVGGISLKYMEQLTD 770 (1089)
Q Consensus 706 ~~lp~~~~~~~~~~~~L~~~L------------~~~~~~V~~aAa~Al~~l~~~y~~~~~~~---~~~~~v~~~~~~L~s 770 (1089)
.-+|....+..+-.+++..++ ..++.+...-+-+-++-+.+-.-+. .+ ....+.+-+++=+++
T Consensus 596 gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~--ie~Lva~snl~~lll~C~~D 673 (885)
T KOG2023|consen 596 GFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSH--IEPLVAQSNLLDLLLQCLQD 673 (885)
T ss_pred cccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhc--hHHHhhhccHHHHHHHHhcc
Confidence 223443333333333332221 1111111111111111111111000 00 002334444444567
Q ss_pred CChhhhhhHHHHhhccchHhh---hhhHHHHHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHhhhccccccccccCCc
Q 001381 771 PNPAIRRGSALALGVLPYELL---ANSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQSQENSLIHSGE 847 (1089)
Q Consensus 771 ~~~~~r~G~a~aLG~lp~~~~---~~~~~~i~~~L~~~~~~~~~~~~~d~e~R~~al~sL~~i~~~~g~~~~~~~~~~~~ 847 (1089)
.-+.+|++....||-+.+.-+ .+.....+..|-... +-.....--||+.|++.++.++|..
T Consensus 674 ~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl------~~~~isv~nNA~WAiGeia~k~g~~---------- 737 (885)
T KOG2023|consen 674 EVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANL------NPENISVCNNAIWAIGEIALKMGLK---------- 737 (885)
T ss_pred CChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcC------ChhhchHHHHHHHHHHHHHHHhchh----------
Confidence 888899998888998876542 344444554443322 2223456679999999999998864
Q ss_pred chhhhhhhhHHHHHHHHHHhcccCCCCCCCCcchHHHHHHHHHHHHHHHHhhccCCCCCCCCCccccccCCCCccccccc
Q 001381 848 DEISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEICTYILCKRDFVPSPEKPQEVKSELPGNVTAEKTL 927 (1089)
Q Consensus 848 ~~~~~~~~~~~~i~~~Ll~~L~DYT~D~RGDVGSwVR~aa~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 927 (1089)
...++..++.-|+.-++- --+-+-+=|.+.-.++.+ .+
T Consensus 738 -----~~~~v~~vl~~L~~iin~------~~~~~tllENtAITIGrL-------------------------------g~ 775 (885)
T KOG2023|consen 738 -----MKQYVSPVLEDLITIINR------QNTPKTLLENTAITIGRL-------------------------------GY 775 (885)
T ss_pred -----hhhHHHHHHHHHHHHhcc------cCchHHHHHhhhhhhhhh-------------------------------hc
Confidence 124556666666655542 222222222222223222 12
Q ss_pred cCHHHHHHHHHHHHHHhhhhhHHHH-----HHHHHHHHHHhhc
Q 001381 928 FDANLATNLVAGIVKQAVEKMDKLR-----EAAAKVLRRILYN 965 (1089)
Q Consensus 928 ~~~~~~~~l~~~llrq~~EkiD~vR-----~~A~~~L~~l~~~ 965 (1089)
..|+.+..-+...+|.-.+.+-.+| ..|++-|+.++..
T Consensus 776 ~~Pe~vAp~l~~f~~pWc~sl~~i~DneEK~sAFrG~c~mi~v 818 (885)
T KOG2023|consen 776 ICPEEVAPHLDSFMRPWCTSLRNIDDNEEKESAFRGLCNMINV 818 (885)
T ss_pred cCHHhcchhHHHHHHHHHHHhcccccchhHHHHHHHHHHheee
Confidence 2344444455566666666554444 5688888888754
No 16
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.44 E-value=3.1e-05 Score=98.95 Aligned_cols=158 Identities=24% Similarity=0.379 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhCcchhhhHHHHHHhhcCCC-----------------------C-
Q 001381 380 DILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSLSEEVFSSVLELFSPG-----------------------E- 435 (1089)
Q Consensus 380 e~vE~iI~~ll~~L~d~dt~vR~saAK~l~rI~~~L~~~~a~~vi~~il~~l~~~-----------------------~- 435 (1089)
-...+|...+.+.|.|+|--+.-.||||+|-|=+-=+..+-..+|+++++.|... +
T Consensus 857 l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~G 936 (1702)
T KOG0915|consen 857 LMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSLKKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDG 936 (1702)
T ss_pred hccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchhHHHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCC
Confidence 4556777888899999999999999999998877766777778888888877310 0
Q ss_pred ------------------------------CCcch---HHHHHHHHHHHhc-CCCCCCcccchHHHHHHhhhhhcccccc
Q 001381 436 ------------------------------GDGSW---HGGCLALAELARR-GLLLPSSLPKVVPVIVKALHYDIRRGSH 481 (1089)
Q Consensus 436 ------------------------------~~~~w---Hg~~LaLael~~~-~ll~p~~l~~il~~i~~~L~f~~r~~~~ 481 (1089)
....| -|+.-.++-++.+ |.-+.++++++||-+.+- .||-
T Consensus 937 g~isTYKELc~LASdl~qPdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY-~yDP----- 1010 (1702)
T KOG0915|consen 937 GKISTYKELCNLASDLGQPDLVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRY-QYDP----- 1010 (1702)
T ss_pred CcchHHHHHHHHHhhcCChHHHHHHHHHhhhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhh-ccCC-----
Confidence 01234 2433333333322 323466788899988543 1222
Q ss_pred CCChhhhhhhhHHHHHhhhccCccchhHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHhcccCC
Q 001381 482 SVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAAAAAFQENVGRQGN 547 (1089)
Q Consensus 482 svG~~VRDAacfi~WslaR~~~~~~l~~~~~~l~~~Ll~~alfD~e~~iRRaAsAAlQE~vGR~g~ 547 (1089)
--.|+||..-| |-.--.=+......|+..|+.+|+ +.|-++|+.+|-|+.-|+-.++-++.+
T Consensus 1011 --~~~Vq~aM~sI-W~~Li~D~k~~vd~y~neIl~eLL-~~lt~kewRVReasclAL~dLl~g~~~ 1072 (1702)
T KOG0915|consen 1011 --DKKVQDAMTSI-WNALITDSKKVVDEYLNEILDELL-VNLTSKEWRVREASCLALADLLQGRPF 1072 (1702)
T ss_pred --cHHHHHHHHHH-HHHhccChHHHHHHHHHHHHHHHH-HhccchhHHHHHHHHHHHHHHHcCCCh
Confidence 25588888775 654433333466789999999986 889999999999999999999877643
No 17
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.42 E-value=0.0012 Score=78.97 Aligned_cols=358 Identities=17% Similarity=0.190 Sum_probs=212.7
Q ss_pred CCChhHHHHHHHHHHHHHhhhCcchhhhHHHHHHhhcCCCCCCcch---HHHHHHH---HHHHhcCCCCCCcccchHHHH
Q 001381 395 DTDTVVRWSAAKGIGRITSCLTSSLSEEVFSSVLELFSPGEGDGSW---HGGCLAL---AELARRGLLLPSSLPKVVPVI 468 (1089)
Q Consensus 395 d~dt~vR~saAK~l~rI~~~L~~~~a~~vi~~il~~l~~~~~~~~w---Hg~~LaL---ael~~~~ll~p~~l~~il~~i 468 (1089)
..|=++|=+.|++|.-+++..+.+.-+-+.+.+-+.|.. ..| -.+.||| ||=|+.|. -++||+++|.+
T Consensus 366 ~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~----~~W~vrEagvLAlGAIAEGcM~g~--~p~LpeLip~l 439 (885)
T KOG2023|consen 366 FSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSS----EEWKVREAGVLALGAIAEGCMQGF--VPHLPELIPFL 439 (885)
T ss_pred cccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCc----chhhhhhhhHHHHHHHHHHHhhhc--ccchHHHHHHH
Confidence 355689999999999999988766555555555555543 446 2355655 45566675 57899999999
Q ss_pred HHhhhhhccccccCCChhhhhhhhHHHHHhhhccCc---cchhHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHhccc
Q 001381 469 VKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCH---TDMRNILEQIAPHLLTVACYDREVNCRRAAAAAFQENVGRQ 545 (1089)
Q Consensus 469 ~~~L~f~~r~~~~svG~~VRDAacfi~WslaR~~~~---~~l~~~~~~l~~~Ll~~alfD~e~~iRRaAsAAlQE~vGR~ 545 (1089)
+..|..+. .-||--+ ||.+.|--+- +.-..|+..+...|+ ..+.|.+--+..||..||--+.-.-
T Consensus 440 ~~~L~DKk--------plVRsIT---CWTLsRys~wv~~~~~~~~f~pvL~~ll-~~llD~NK~VQEAAcsAfAtleE~A 507 (885)
T KOG2023|consen 440 LSLLDDKK--------PLVRSIT---CWTLSRYSKWVVQDSRDEYFKPVLEGLL-RRLLDSNKKVQEAACSAFATLEEEA 507 (885)
T ss_pred HHHhccCc--------cceeeee---eeeHhhhhhhHhcCChHhhhHHHHHHHH-HHHhcccHHHHHHHHHHHHHHHHhc
Confidence 88775443 3344433 6778775331 122246666666654 7788999999999998875442222
Q ss_pred CCCCCCccceecccccchhhhHHHHHHHHHHHHhhhcchHHHHHHHHh--CccCCCCHHHHHHHHHHHHHHHc---cCch
Q 001381 546 GNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDELLY--NKICHWDKVLRELAAEALSALVK---YDPE 620 (1089)
Q Consensus 546 g~~p~GI~il~~~d~~~v~~r~~a~~~va~~va~~~~Y~~~li~~Ll~--~~l~h~D~~iR~laa~aL~~L~~---~~~~ 620 (1089)
|. .+-.|.+.|+++|+. .+..|.+.-+-.-|..+|+.-+. ..|.
T Consensus 508 ~~-------------------------------eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~ 556 (885)
T KOG2023|consen 508 GE-------------------------------ELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPA 556 (885)
T ss_pred cc-------------------------------hhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHH
Confidence 22 122477778888876 25556666666666666665552 2234
Q ss_pred hhHHHHHHHhccc---cCCCChhhHHHHHHHHHHHHHHHhcccccCChhHHHHHHhhhHHHHhhhh-------ccCcchH
Q 001381 621 YFANFILEKLTPF---TLSTDLCTRHGATLAAGEVVLALCKYDYALPADKQKIVAGIVPGIEKARL-------YRGKGGE 690 (1089)
Q Consensus 621 ~~~~~vlp~Ll~~---l~~~d~~~RHG~lLalaevl~~l~~~~~~~~~~~~~~i~~i~~~~~~~~l-------~r~~~ge 690 (1089)
|+ ..++|-|+++ +.+.|-.. .-.+-+++.+..++..--.+..+.+..+...|+++...... +--..-+
T Consensus 557 Yi-qiLmPPLi~KW~~lsd~DKdL-fPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkd 634 (885)
T KOG2023|consen 557 YI-QILMPPLIEKWELLSDSDKDL-FPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKD 634 (885)
T ss_pred HH-HHhccHHHHHHHhcCcccchH-HHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcc
Confidence 43 4566777654 34443332 23567788888887654445566666666666664322110 0001111
Q ss_pred HHHHHHHHHHHHhhhcCCCCchh---hHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCcchhhhhHHHHHHH
Q 001381 691 IMRSAVSRFIECISLSFVSLPEK---TKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQ 767 (1089)
Q Consensus 691 lir~a~~~lI~~ls~~~lp~~~~---~~~~~~~~L~~~L~~~~~~V~~aAa~Al~~l~~~y~~~~~~~~~~~~v~~~~~~ 767 (1089)
+|.. ...|+.-++. ++..+-+ ....+.+++..|+.++.++||.++=.-+..+....+.. -.-..+.+++-+...
T Consensus 635 fiI~-sLDL~SGLae-gLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~-v~p~~~~fl~~lg~N 711 (885)
T KOG2023|consen 635 FIIV-SLDLLSGLAE-GLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEH-VIPNLADFLPILGAN 711 (885)
T ss_pred eEEE-eHHHHhHHHH-HhhhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHh-ccchHHHHHHHHhhc
Confidence 2211 1222222221 1111111 12357888999999999999998877777665543211 011124555555555
Q ss_pred hCCCChhhhhhHHHHhhccchHhh---hhhHHHHHHHHhhhc
Q 001381 768 LTDPNPAIRRGSALALGVLPYELL---ANSWRDVLLKLCSCC 806 (1089)
Q Consensus 768 L~s~~~~~r~G~a~aLG~lp~~~~---~~~~~~i~~~L~~~~ 806 (1089)
+...+..++..+.-|+|-+.-.+- ++.+..++..|+..+
T Consensus 712 l~~~~isv~nNA~WAiGeia~k~g~~~~~~v~~vl~~L~~ii 753 (885)
T KOG2023|consen 712 LNPENISVCNNAIWAIGEIALKMGLKMKQYVSPVLEDLITII 753 (885)
T ss_pred CChhhchHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHh
Confidence 667778889999999999875552 344566777776554
No 18
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=0.017 Score=70.77 Aligned_cols=645 Identities=16% Similarity=0.152 Sum_probs=355.7
Q ss_pred HHHHHHHHHHhhhcC-CchhhHHHHHHHHHhcCCCh-HHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHhcC
Q 001381 199 VMRILGFCKDYLSNA-GPMRTIAGLLLAKLLTRPDM-PTAFASFVEWTHEVLSSVTDDVMNHFRLLGVVEALAAIFKAGG 276 (1089)
Q Consensus 199 ~~rIl~l~~~yL~~~-~k~r~~Aa~LLsrl~tR~D~-~~~l~~f~~w~~~~l~~~~~~~~~~~~~~G~L~~l~~ilk~~~ 276 (1089)
-+.|-...++-|+.+ .....+||.+++....= .. ...-+.|+.-......... ..+.+- +.|.++.++..+.+
T Consensus 88 reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~-ElP~n~wp~li~~lv~nv~~~~---~~~~k~-~slealGyice~i~ 162 (859)
T KOG1241|consen 88 REQVKNNILRTLGSPEPRRPSSAAQCVAAIACI-ELPQNQWPELIVTLVSNVGEEQ---ASMVKE-SSLEALGYICEDID 162 (859)
T ss_pred HHHHHHHHHHHcCCCCCCccchHHHHHHHHHHh-hCchhhCHHHHHHHHHhccccc---chHHHH-HHHHHHHHHHccCC
Confidence 345666677777755 55666889999987431 11 1125666654444433221 112455 99999999999999
Q ss_pred hhhhhhhhHHHHHhhhhhhccCcCCCchhHHHHHHHHHHHhhhcccCCCCccccccccccccccccccccccccccccCc
Q 001381 277 RKVLLDVIPVVWNDASTMLKSGSAARSPLLRKYLMKLTQRLGLTCLPRCTSAWRYVIRTSSLGENMSSRAAFREIDQCDH 356 (1089)
Q Consensus 277 ~~~l~~~~~~i~~~~~~l~~~~~~~~~~l~rKl~~Kl~~rlal~~L~pr~~~wrY~rg~rsL~~nl~~~~~~~~~~~~~~ 356 (1089)
.+++....+.++-.+....... ..++-+|--..|.+-. ||+ ..+
T Consensus 163 pevl~~~sN~iLtaIv~gmrk~--e~s~~vRLaa~~aL~n--------------------sLe--f~~------------ 206 (859)
T KOG1241|consen 163 PEVLEQQSNDILTAIVQGMRKE--ETSAAVRLAALNALYN--------------------SLE--FTK------------ 206 (859)
T ss_pred HHHHHHHHhHHHHHHHhhcccc--CCchhHHHHHHHHHHH--------------------HHH--HHH------------
Confidence 9998888888876444433211 1133344444443321 111 000
Q ss_pred cccccccccccCCCCCCCCCCchHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhh----hCcchhhhHHHHHHhhcC
Q 001381 357 SVVDSLKSEQNRNCPEDEGMDVPDILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSC----LTSSLSEEVFSSVLELFS 432 (1089)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~v~e~vE~iI~~ll~~L~d~dt~vR~saAK~l~rI~~~----L~~~~a~~vi~~il~~l~ 432 (1089)
.+++...+...|+.-.-+.-..+|..||-+|=..|-||..- +++.|.+.+..--+..+.
T Consensus 207 -----------------~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amk 269 (859)
T KOG1241|consen 207 -----------------ANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMK 269 (859)
T ss_pred -----------------HhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 11222244555555566677789999999999999999875 455555556555555555
Q ss_pred CCCCCc------chHH-------HHHHHHHHHhcCCCCCC-------cccchHHHHHHhhhhhc-------cccccCCC-
Q 001381 433 PGEGDG------SWHG-------GCLALAELARRGLLLPS-------SLPKVVPVIVKALHYDI-------RRGSHSVG- 484 (1089)
Q Consensus 433 ~~~~~~------~wHg-------~~LaLael~~~~ll~p~-------~l~~il~~i~~~L~f~~-------r~~~~svG- 484 (1089)
++.++. -|-+ ..+-.+|..-.|+. |. .++.++|.++..|.=|. +.....-|
T Consensus 270 s~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~-p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~ 348 (859)
T KOG1241|consen 270 SDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLP-PSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGV 348 (859)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-chhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHH
Confidence 443332 3554 34556777777764 42 25678888888876522 22111112
Q ss_pred -----------------------------hhhhhhhhHHHHHhhhccCccchhHHHHHHHHHHHHHHhcCCCchhhHHHH
Q 001381 485 -----------------------------SHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAAA 535 (1089)
Q Consensus 485 -----------------------------~~VRDAacfi~WslaR~~~~~~l~~~~~~l~~~Ll~~alfD~e~~iRRaAs 535 (1089)
=.=||||-+..-|+--.-+++-++|++....+.++ ....|+.+.+|+++.
T Consensus 349 CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii-~lm~D~sl~VkdTaA 427 (859)
T KOG1241|consen 349 CLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSII-NLMSDPSLWVKDTAA 427 (859)
T ss_pred HHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHH-HHhcCchhhhcchHH
Confidence 12378888888888777777788899998888875 666699999998887
Q ss_pred HHHHHHhccc-CCCCCCc-------cceec-----ccc-cchhhhHHHHHHHHHHHH-----h----h-hcchHHHHHHH
Q 001381 536 AAFQENVGRQ-GNYPHGI-------DIVNT-----ADY-FSLSSRVYSYLHVAVFIA-----Q----Y-EGYLYPFVDEL 591 (1089)
Q Consensus 536 AAlQE~vGR~-g~~p~GI-------~il~~-----~d~-~~v~~r~~a~~~va~~va-----~----~-~~Y~~~li~~L 591 (1089)
=.| ||. ...|.-| .+++. -|= +-.+|-.-+|..++.... . . ..|.+.||+.|
T Consensus 428 wtl----grI~d~l~e~~~n~~~l~~~l~~l~~gL~DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~L 503 (859)
T KOG1241|consen 428 WTL----GRIADFLPEAIINQELLQSKLSALLEGLNDEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSL 503 (859)
T ss_pred HHH----HHHHhhchhhcccHhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHH
Confidence 774 776 3333211 11110 011 112444555555543332 1 1 14788999999
Q ss_pred HhC--ccCCCCHHHHHHHHHHHHHHHccCchhhHHHHH---HHhcc----ccC--CCChhhH------HHHHH-HHHHHH
Q 001381 592 LYN--KICHWDKVLRELAAEALSALVKYDPEYFANFIL---EKLTP----FTL--STDLCTR------HGATL-AAGEVV 653 (1089)
Q Consensus 592 l~~--~l~h~D~~iR~laa~aL~~L~~~~~~~~~~~vl---p~Ll~----~l~--~~d~~~R------HG~lL-alaevl 653 (1089)
+.. ...-.+...|-.|=+||+++++..|.+..+.+. +..+. .++ -.+...| ++.+. .|+.|+
T Consensus 504 l~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~ 583 (859)
T KOG1241|consen 504 LKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSII 583 (859)
T ss_pred HhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHH
Confidence 973 233478899999999999999988875543222 12222 111 1122223 33322 255555
Q ss_pred HHHhcccccCChhHHHHHHhhhHHHHhhhhccCcchHHHHHHHHHHHHHhhhcCCCCchhhHHHHHHHHHHhcCCC-cHH
Q 001381 654 LALCKYDYALPADKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLPEKTKRSLLDTLNENLRHP-NSQ 732 (1089)
Q Consensus 654 ~~l~~~~~~~~~~~~~~i~~i~~~~~~~~l~r~~~gelir~a~~~lI~~ls~~~lp~~~~~~~~~~~~L~~~L~~~-~~~ 732 (1089)
..+.. .-.+..+.+++++-.++..+ -.+.-.|-.--|+..+++.++.. + .+..+.+.+.+...|++. +-.
T Consensus 584 rk~~~----~~~~~~d~iM~lflri~~s~-~s~~v~e~a~laV~tl~~~Lg~~-F---~kym~~f~pyL~~gL~n~~e~q 654 (859)
T KOG1241|consen 584 RKVGS----DIREVSDQIMGLFLRIFESK-RSAVVHEEAFLAVSTLAESLGKG-F---AKYMPAFKPYLLMGLSNFQEYQ 654 (859)
T ss_pred HHccc----cchhHHHHHHHHHHHHHcCC-ccccchHHHHHHHHHHHHHHhHh-H---HHHHHHHHHHHHHHhhcchHHH
Confidence 54432 22445566777776666430 01112333444667777766531 1 134567777888888444 445
Q ss_pred HHHHHHHHHHHHHHHhhhccCcchhhhhHHHHHHHhCCCC------hhhhhh---HHHHhhccchHhhhhhHHHHHHHHh
Q 001381 733 IQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLTDPN------PAIRRG---SALALGVLPYELLANSWRDVLLKLC 803 (1089)
Q Consensus 733 V~~aAa~Al~~l~~~y~~~~~~~~~~~~v~~~~~~L~s~~------~~~r~G---~a~aLG~lp~~~~~~~~~~i~~~L~ 803 (1089)
|-.+|+.-+..+++..-..- ..--+.+...+++.|.+++ |..-.- .|+|+|.= +.+++..++..|.
T Consensus 655 Vc~~aVglVgdl~raL~~~i-~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~----F~~Yl~~vm~llq 729 (859)
T KOG1241|consen 655 VCAAAVGLVGDLARALEDDI-LPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGAD----FEPYLEMVMPLLQ 729 (859)
T ss_pred HHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHh----HHHHHHHHHHHHH
Confidence 55555555555544321000 0001677888888775432 222211 23333322 2345666776665
Q ss_pred hhcccc-CCCCCC----CHHHHHHHHHHHHHHHhhhccccccccccCCcchhhhhhhhHHHHHHHHHHhcccCCCCCCCC
Q 001381 804 SCCLIE-ENPEDR----DTEARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGD 878 (1089)
Q Consensus 804 ~~~~~~-~~~~~~----d~e~R~~al~sL~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~L~DYT~D~RGD 878 (1089)
.+.... ++.+.. --+-|.+++++-..+++-++.. ++. ....+.+..|++ .++-- ..-+|
T Consensus 730 ~as~~~~d~~~~~~~dYvd~LRe~~leay~gi~qglk~~--~~~--------~~~~p~v~~I~s----fi~~I--~~e~~ 793 (859)
T KOG1241|consen 730 QASSVQTDPADDSMVDYVDELREGILEAYTGIIQGLKTH--ADV--------MLVQPYVPHIIS----FIDRI--AAEPD 793 (859)
T ss_pred HHHhccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhcc--cch--------hhhhcchHHHHH----HHHHH--hcCcc
Confidence 554111 110111 1277999999988887755521 111 222334444444 44332 23356
Q ss_pred c-chHHHHHHHHHHHHHHHHhhccCCCCCCCCCccccccCCCCccccccccCHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 001381 879 V-GSWVREAAVDGLEICTYILCKRDFVPSPEKPQEVKSELPGNVTAEKTLFDANLATNLVAGIVKQAVEKMDKLREAAAK 957 (1089)
Q Consensus 879 V-GSwVR~aa~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~llrq~~EkiD~vR~~A~~ 957 (1089)
+ |+..| +|+..|+.+...+.+ ..-+..++++.+++++.+-.|... +++|..|-.
T Consensus 794 ~~~~~~~-~a~GlIgDL~~~fg~---------------------~~~~~~~~~~~i~~~L~~~~k~~~---~~tK~~A~w 848 (859)
T KOG1241|consen 794 VSEALHA-AALGLIGDLATMFGK---------------------GVIKLFLDEDWIKDFLNEGRKSST---QKTKDLARW 848 (859)
T ss_pred cchHHHH-HHHHHHHHHHHHccc---------------------chhhhhcchHHHHHHHHHhhhhhh---hhhHHHHHH
Confidence 6 55555 556667776533320 012244566788888876666554 455555555
Q ss_pred HHHHH
Q 001381 958 VLRRI 962 (1089)
Q Consensus 958 ~L~~l 962 (1089)
+...+
T Consensus 849 a~e~i 853 (859)
T KOG1241|consen 849 ATEEI 853 (859)
T ss_pred HHHHH
Confidence 44443
No 19
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.30 E-value=0.013 Score=71.80 Aligned_cols=260 Identities=17% Similarity=0.154 Sum_probs=160.6
Q ss_pred hHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhh-hCcchhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHHhcCCCC
Q 001381 379 PDILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSC-LTSSLSEEVFSSVLELFSPGEGDGSWHGGCLALAELARRGLLL 457 (1089)
Q Consensus 379 ~e~vE~iI~~ll~~L~d~dt~vR~saAK~l~rI~~~-L~~~~a~~vi~~il~~l~~~~~~~~wHg~~LaLael~~~~ll~ 457 (1089)
+|.=|.|=+.++..|+...+..+-+||..++.|+.- ||...-.+++..+.+......+...-.+.|.|+|++|..-.
T Consensus 85 ~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~-- 162 (859)
T KOG1241|consen 85 AEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDID-- 162 (859)
T ss_pred HHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCC--
Confidence 366788889999999999999999999999999876 88877788888888777544333233579999999998754
Q ss_pred CCcc----cchHHHHHHhhhhhccccccCCChhhhhhhhH---HHHHhhh-ccCccchhHHHHHHHHHHHHHHhcCCCch
Q 001381 458 PSSL----PKVVPVIVKALHYDIRRGSHSVGSHVRDAAAY---VCWAFGR-AYCHTDMRNILEQIAPHLLTVACYDREVN 529 (1089)
Q Consensus 458 p~~l----~~il~~i~~~L~f~~r~~~~svG~~VRDAacf---i~WslaR-~~~~~~l~~~~~~l~~~Ll~~alfD~e~~ 529 (1089)
|+.+ ..|+-.|+++. |+-..| ++||=||-= =+--|.+ +|+.+ +-.+.+-..++-+---+|..
T Consensus 163 pevl~~~sN~iLtaIv~gm----rk~e~s--~~vRLaa~~aL~nsLef~~~nF~~E----~ern~iMqvvcEatq~~d~~ 232 (859)
T KOG1241|consen 163 PEVLEQQSNDILTAIVQGM----RKEETS--AAVRLAALNALYNSLEFTKANFNNE----MERNYIMQVVCEATQSPDEE 232 (859)
T ss_pred HHHHHHHHhHHHHHHHhhc----cccCCc--hhHHHHHHHHHHHHHHHHHHhhccH----hhhceeeeeeeecccCCcHH
Confidence 4443 33444444443 222223 789988643 3334455 34432 11233344566777777888
Q ss_pred hhHHHHHHHHHHhcccC----CCC------------------CCccceecccccc-hhhhH-HHHHHHHHHHHhh-h---
Q 001381 530 CRRAAAAAFQENVGRQG----NYP------------------HGIDIVNTADYFS-LSSRV-YSYLHVAVFIAQY-E--- 581 (1089)
Q Consensus 530 iRRaAsAAlQE~vGR~g----~~p------------------~GI~il~~~d~~~-v~~r~-~a~~~va~~va~~-~--- 581 (1089)
||- ||||-+|.=.- ..+ |.===++.+.|++ |-.-. .-+.+.+..+.+. +
T Consensus 233 i~~---aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~ 309 (859)
T KOG1241|consen 233 IQV---AAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSS 309 (859)
T ss_pred HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchh
Confidence 887 45555443211 000 0000122233443 21111 1111222222221 1
Q ss_pred -cc----hHHHHHHHHhC--------ccCCCCHHHHHHHHHHHHHHHccCchhhHHHHHHHhccccCCCChhhHHHHHHH
Q 001381 582 -GY----LYPFVDELLYN--------KICHWDKVLRELAAEALSALVKYDPEYFANFILEKLTPFTLSTDLCTRHGATLA 648 (1089)
Q Consensus 582 -~Y----~~~li~~Ll~~--------~l~h~D~~iR~laa~aL~~L~~~~~~~~~~~vlp~Ll~~l~~~d~~~RHG~lLa 648 (1089)
.| .+.+++-|+.. --.+| ..-+.|+.+|.-++.-..+.+..+|+|.+-+.++++||..|.-++.|
T Consensus 310 ~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdW--np~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmA 387 (859)
T KOG1241|consen 310 KYFARQALQDVVPVLLELLTKQDEDDDDDDW--NPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMA 387 (859)
T ss_pred hHHHHHHHhHhhHHHHHHHHhCCCCcccccC--cHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHH
Confidence 01 11233333331 11234 45678999999998888888999999999999999999999999999
Q ss_pred HHHHHHH
Q 001381 649 AGEVVLA 655 (1089)
Q Consensus 649 laevl~~ 655 (1089)
++.++++
T Consensus 388 FGSIl~g 394 (859)
T KOG1241|consen 388 FGSILEG 394 (859)
T ss_pred HHhhhcC
Confidence 9999975
No 20
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.27 E-value=0.00021 Score=86.86 Aligned_cols=335 Identities=15% Similarity=0.144 Sum_probs=205.8
Q ss_pred HHHHHhccc--C-CCCCCc-cceecccccchhhhHHHHHHHHHHHHhhhcchHHHHHHHHhCccCCCCHHHHHHHHHHHH
Q 001381 537 AFQENVGRQ--G-NYPHGI-DIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNKICHWDKVLRELAAEALS 612 (1089)
Q Consensus 537 AlQE~vGR~--g-~~p~GI-~il~~~d~~~v~~r~~a~~~va~~va~~~~Y~~~li~~Ll~~~l~h~D~~iR~laa~aL~ 612 (1089)
+++.++.-+ | .+.+|. ++++.+.=-....++=.|+-+......-++...-+++.|.+ -+.|.|+.+|-+|-++++
T Consensus 26 ~l~kli~~~~~G~~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l~~n~l~k-dl~~~n~~~~~lAL~~l~ 104 (526)
T PF01602_consen 26 ALKKLIYLMMLGYDISFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLILIINSLQK-DLNSPNPYIRGLALRTLS 104 (526)
T ss_dssp HHHHHHHHHHTT---GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHH-HHCSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hhcCCCHHHHHHHHhhhh
Confidence 455555543 4 223332 33433332234556666666666655556655667888876 588999999999999999
Q ss_pred HHHccCchhhHHHHHHHhccccCCCChhhHHHHHHHHHHHHHHHhcccccCChhHHHH-HHhhhHHHHhhhhccCcchHH
Q 001381 613 ALVKYDPEYFANFILEKLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPADKQKI-VAGIVPGIEKARLYRGKGGEI 691 (1089)
Q Consensus 613 ~L~~~~~~~~~~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~l~~~~~~~~~~~~~~-i~~i~~~~~~~~l~r~~~gel 691 (1089)
.++. ..+.+.++|.+.+.+.+++..+|.-+++++..+....+ +.... +.+.+..+.+. . ..-
T Consensus 105 ~i~~---~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p--------~~~~~~~~~~l~~lL~d-----~-~~~ 167 (526)
T PF01602_consen 105 NIRT---PEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDP--------DLVEDELIPKLKQLLSD-----K-DPS 167 (526)
T ss_dssp HH-S---HHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCH--------CCHHGGHHHHHHHHTTH-----S-SHH
T ss_pred hhcc---cchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCH--------HHHHHHHHHHHhhhccC-----C-cch
Confidence 9873 34777889999999999999999999999999987633 22222 22223333222 1 234
Q ss_pred HHHHHHHHHHHh-hhcCCCCchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCcchh--hhhHHHHHHHh
Q 001381 692 MRSAVSRFIECI-SLSFVSLPEKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVV--GGISLKYMEQL 768 (1089)
Q Consensus 692 ir~a~~~lI~~l-s~~~lp~~~~~~~~~~~~L~~~L~~~~~~V~~aAa~Al~~l~~~y~~~~~~~~~--~~~v~~~~~~L 768 (1089)
+..+++.++..+ ..... .......+...+...+..+++.+|..+...+..+... ..... ..+++.+...+
T Consensus 168 V~~~a~~~l~~i~~~~~~--~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~-----~~~~~~~~~~i~~l~~~l 240 (526)
T PF01602_consen 168 VVSAALSLLSEIKCNDDS--YKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPM-----EPEDADKNRIIEPLLNLL 240 (526)
T ss_dssp HHHHHHHHHHHHHCTHHH--HTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSS-----SHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCcch--hhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccC-----ChhhhhHHHHHHHHHHHh
Confidence 556667777666 21110 0034566666677777899999998877766543321 11122 35777777777
Q ss_pred CCCChhhhhhHHHHhhccchHhhhhhHHHHHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHhhhccccccccccCCcc
Q 001381 769 TDPNPAIRRGSALALGVLPYELLANSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQSQENSLIHSGED 848 (1089)
Q Consensus 769 ~s~~~~~r~G~a~aLG~lp~~~~~~~~~~i~~~L~~~~~~~~~~~~~d~e~R~~al~sL~~i~~~~g~~~~~~~~~~~~~ 848 (1089)
++.+++.....+.++..++.... ....++..|+..+ ...+.+.|..++.+|..++.....
T Consensus 241 ~s~~~~V~~e~~~~i~~l~~~~~--~~~~~~~~L~~lL------~s~~~nvr~~~L~~L~~l~~~~~~------------ 300 (526)
T PF01602_consen 241 QSSSPSVVYEAIRLIIKLSPSPE--LLQKAINPLIKLL------SSSDPNVRYIALDSLSQLAQSNPP------------ 300 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSHH--HHHHHHHHHHHHH------TSSSHHHHHHHHHHHHHHCCHCHH------------
T ss_pred hccccHHHHHHHHHHHHhhcchH--HHHhhHHHHHHHh------hcccchhehhHHHHHHHhhcccch------------
Confidence 77777777777777666543321 2345566666655 356789999999999998654210
Q ss_pred hhhhhhhhHHHHHHHHHHhcccCCCCCCCCcchHHHHHHHHHHHHHHHHhhccCCCCCCCCCccccccCCCCcccccccc
Q 001381 849 EISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEICTYILCKRDFVPSPEKPQEVKSELPGNVTAEKTLF 928 (1089)
Q Consensus 849 ~~~~~~~~~~~i~~~Ll~~L~DYT~D~RGDVGSwVR~aa~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 928 (1089)
.+. ....+ +.++. |.. -..||..+++.+..++
T Consensus 301 --~v~--~~~~~----~~~l~-~~~------d~~Ir~~~l~lL~~l~--------------------------------- 332 (526)
T PF01602_consen 301 --AVF--NQSLI----LFFLL-YDD------DPSIRKKALDLLYKLA--------------------------------- 332 (526)
T ss_dssp --HHG--THHHH----HHHHH-CSS------SHHHHHHHHHHHHHH----------------------------------
T ss_pred --hhh--hhhhh----hheec-CCC------ChhHHHHHHHHHhhcc---------------------------------
Confidence 111 11111 22222 111 1448988888775542
Q ss_pred CHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHhh
Q 001381 929 DANLATNLVAGIVKQAVEKMD-KLREAAAKVLRRILY 964 (1089)
Q Consensus 929 ~~~~~~~l~~~llrq~~EkiD-~vR~~A~~~L~~l~~ 964 (1089)
++..+..++..+.+...+.=| .+|..+...+..+..
T Consensus 333 ~~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~ 369 (526)
T PF01602_consen 333 NESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAE 369 (526)
T ss_dssp -HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHh
Confidence 456677788888888766633 389988888887753
No 21
>PTZ00429 beta-adaptin; Provisional
Probab=98.23 E-value=0.011 Score=74.88 Aligned_cols=421 Identities=13% Similarity=0.057 Sum_probs=235.2
Q ss_pred hHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhCcchhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHHhcCCCCC
Q 001381 379 PDILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSLSEEVFSSVLELFSPGEGDGSWHGGCLALAELARRGLLLP 458 (1089)
Q Consensus 379 ~e~vE~iI~~ll~~L~d~dt~vR~saAK~l~rI~~~L~~~~a~~vi~~il~~l~~~~~~~~wHg~~LaLael~~~~ll~p 458 (1089)
||..--+|+.|...+.|++..+|-.|-+.++.|-. +++.+.++..|.
T Consensus 100 pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir~---~~i~e~l~~~lk------------------------------ 146 (746)
T PTZ00429 100 PEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIRV---SSVLEYTLEPLR------------------------------ 146 (746)
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCc---HHHHHHHHHHHH------------------------------
Confidence 56677889999999999999999999998887653 233344444443
Q ss_pred CcccchHHHHHHhhhhhccccccCCChhhhhhhhHHHHHhhhccCccchh--HHHHHHHHHHHHHHhcCCCchhhHHHHH
Q 001381 459 SSLPKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMR--NILEQIAPHLLTVACYDREVNCRRAAAA 536 (1089)
Q Consensus 459 ~~l~~il~~i~~~L~f~~r~~~~svG~~VRDAacfi~WslaR~~~~~~l~--~~~~~l~~~Ll~~alfD~e~~iRRaAsA 536 (1089)
+++.... ..||-+|...+.-+.+... +... .+++. +...+-|++..+..+|.+
T Consensus 147 -----------k~L~D~~--------pYVRKtAalai~Kly~~~p-elv~~~~~~~~-----L~~LL~D~dp~Vv~nAl~ 201 (746)
T PTZ00429 147 -----------RAVADPD--------PYVRKTAAMGLGKLFHDDM-QLFYQQDFKKD-----LVELLNDNNPVVASNAAA 201 (746)
T ss_pred -----------HHhcCCC--------HHHHHHHHHHHHHHHhhCc-ccccccchHHH-----HHHHhcCCCccHHHHHHH
Confidence 3332111 5688888887777766543 2111 12222 233467999999999999
Q ss_pred HHHHHhcccCCCCCCccceecccccch-hhhH--HHHH--HHHHHHHhh----hcchHHHHHHHHhCccCCCCHHHHHHH
Q 001381 537 AFQENVGRQGNYPHGIDIVNTADYFSL-SSRV--YSYL--HVAVFIAQY----EGYLYPFVDELLYNKICHWDKVLRELA 607 (1089)
Q Consensus 537 AlQE~vGR~g~~p~GI~il~~~d~~~v-~~r~--~a~~--~va~~va~~----~~Y~~~li~~Ll~~~l~h~D~~iR~la 607 (1089)
+|.|+--.. |.++++.... ++.+ .... +-+. .+-..++.| +.-...+++.+.. .+.|-+..+.--|
T Consensus 202 aL~eI~~~~---~~~l~l~~~~-~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~~~il~~l~~-~Lq~~N~AVVl~A 276 (746)
T PTZ00429 202 IVCEVNDYG---SEKIESSNEW-VNRLVYHLPECNEWGQLYILELLAAQRPSDKESAETLLTRVLP-RMSHQNPAVVMGA 276 (746)
T ss_pred HHHHHHHhC---chhhHHHHHH-HHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH-HhcCCCHHHHHHH
Confidence 999985332 2222221100 0000 0000 0000 011112333 1123456666664 6788999999999
Q ss_pred HHHHHHHHccCchhhHHHHH----HHhccccCCCChhhHHHHHHHHHHHHHHHhcccccCChhHHHHHHhhhHHHHhhhh
Q 001381 608 AEALSALVKYDPEYFANFIL----EKLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPADKQKIVAGIVPGIEKARL 683 (1089)
Q Consensus 608 a~aL~~L~~~~~~~~~~~vl----p~Ll~~l~~~d~~~RHG~lLalaevl~~l~~~~~~~~~~~~~~i~~i~~~~~~~~l 683 (1089)
++++-.+....+......++ +-++ .+.+.+.+++.=++-.+..++... +.. +.... +.
T Consensus 277 ik~il~l~~~~~~~~~~~~~~rl~~pLv-~L~ss~~eiqyvaLr~I~~i~~~~--------P~l-------f~~~~--~~ 338 (746)
T PTZ00429 277 IKVVANLASRCSQELIERCTVRVNTALL-TLSRRDAETQYIVCKNIHALLVIF--------PNL-------LRTNL--DS 338 (746)
T ss_pred HHHHHHhcCcCCHHHHHHHHHHHHHHHH-HhhCCCccHHHHHHHHHHHHHHHC--------HHH-------HHHHH--Hh
Confidence 99998887653222333332 2222 234566778875555555554422 111 11111 11
Q ss_pred c--cCcchHHHHHHHHHHHHHhhhcCCCCchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCcchhhhhH
Q 001381 684 Y--RGKGGEIMRSAVSRFIECISLSFVSLPEKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGIS 761 (1089)
Q Consensus 684 ~--r~~~gelir~a~~~lI~~ls~~~lp~~~~~~~~~~~~L~~~L~~~~~~V~~aAa~Al~~l~~~y~~~~~~~~~~~~v 761 (1089)
| +-..+..++.....++-.++.. +.+..+++=|.+.....+.++...|..|+..+...| ....+..+
T Consensus 339 Ff~~~~Dp~yIK~~KLeIL~~Lane------~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~-----~~~a~~cV 407 (746)
T PTZ00429 339 FYVRYSDPPFVKLEKLRLLLKLVTP------SVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKV-----DSVAPDCA 407 (746)
T ss_pred hhcccCCcHHHHHHHHHHHHHHcCc------ccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhC-----hHHHHHHH
Confidence 1 1123456777777777766642 122233333445556778889999999998887655 22346777
Q ss_pred HHHHHHhCCCChhhhhhHHHHhhccchHhhh-hhHHHHHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHhhhcccccc
Q 001381 762 LKYMEQLTDPNPAIRRGSALALGVLPYELLA-NSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQSQEN 840 (1089)
Q Consensus 762 ~~~~~~L~s~~~~~r~G~a~aLG~lp~~~~~-~~~~~i~~~L~~~~~~~~~~~~~d~e~R~~al~sL~~i~~~~g~~~~~ 840 (1089)
+.+++.++........ ++-++-..+-+ +. ..++..|+..+.. ....+.++|.+.+.-|++.+..+.
T Consensus 408 ~~Ll~ll~~~~~~v~e----~i~vik~IlrkyP~-~~il~~L~~~~~~---~~i~e~~AKaaiiWILGEy~~~I~----- 474 (746)
T PTZ00429 408 NLLLQIVDRRPELLPQ----VVTAAKDIVRKYPE-LLMLDTLVTDYGA---DEVVEEEAKVSLLWMLGEYCDFIE----- 474 (746)
T ss_pred HHHHHHhcCCchhHHH----HHHHHHHHHHHCcc-HHHHHHHHHhhcc---cccccHHHHHHHHHHHHhhHhhHh-----
Confidence 7887777643222211 22222111111 11 1245555543211 134678999999999998765432
Q ss_pred ccccCCcchhhhhhhhHHHHHHHHHHhcccCCCCCCCCcchHHHHHHHHHHHHHHHHhhccCCCCCCCCCccccccCCCC
Q 001381 841 SLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEICTYILCKRDFVPSPEKPQEVKSELPGN 920 (1089)
Q Consensus 841 ~~~~~~~~~~~~~~~~~~~i~~~Ll~~L~DYT~D~RGDVGSwVR~aa~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~ 920 (1089)
....++..+++.+.+. +.-||.+.+.+.-.++ .+
T Consensus 475 ---------------~a~~~L~~~i~~f~~E--------~~~VqlqlLta~vKlf---l~-------------------- 508 (746)
T PTZ00429 475 ---------------NGKDIIQRFIDTIMEH--------EQRVQLAILSAAVKMF---LR-------------------- 508 (746)
T ss_pred ---------------hHHHHHHHHHhhhccC--------CHHHHHHHHHHHHHHH---hc--------------------
Confidence 1234555555555444 4569999888886654 20
Q ss_pred ccccccccCHHHHHHHHHHHHHHhhhh-hH-HHHHHHHHH
Q 001381 921 VTAEKTLFDANLATNLVAGIVKQAVEK-MD-KLREAAAKV 958 (1089)
Q Consensus 921 ~~~~~~~~~~~~~~~l~~~llrq~~Ek-iD-~vR~~A~~~ 958 (1089)
.|+..+.++..+++.+.+. -| .||.+|..-
T Consensus 509 --------~p~~~~~~l~~vL~~~t~~~~d~DVRDRA~~Y 540 (746)
T PTZ00429 509 --------DPQGMEPQLNRVLETVTTHSDDPDVRDRAFAY 540 (746)
T ss_pred --------CcHHHHHHHHHHHHHHHhcCCChhHHHHHHHH
Confidence 1233466788888877765 44 699999653
No 22
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.18 E-value=0.0028 Score=76.65 Aligned_cols=417 Identities=17% Similarity=0.182 Sum_probs=237.1
Q ss_pred hcCCCChhHHHHHHHHHHHHHhhhCcchhhhHHHHHHhhcCCCCCCcchHH---HHHHHHHHHhcCCCCCCcccchHHHH
Q 001381 392 GLRDTDTVVRWSAAKGIGRITSCLTSSLSEEVFSSVLELFSPGEGDGSWHG---GCLALAELARRGLLLPSSLPKVVPVI 468 (1089)
Q Consensus 392 ~L~d~dt~vR~saAK~l~rI~~~L~~~~a~~vi~~il~~l~~~~~~~~wHg---~~LaLael~~~~ll~p~~l~~il~~i 468 (1089)
.+.+.|..||-..|.+++-+++.|+-+ ++++.+-..+.+..+-.+.|+ +..-+|+|...+.+ ++|..++.++
T Consensus 484 Didn~deYVRnttarafavvasalgip---~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvl--phl~~lv~ii 558 (1172)
T KOG0213|consen 484 DIDNKDEYVRNTTARAFAVVASALGIP---ALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVL--PHLKPLVKII 558 (1172)
T ss_pred CcccccHHHHHHHHHHHHHHHHHhCcH---HHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhh--hhhHHHHHHH
Confidence 344789999999999999999999743 556655555654444444466 44566777766653 5778899999
Q ss_pred HHhhhhhccccc--------------cCCChhhhhhhhHHHHHhhhccCccchhHHHHHH--------------HH---H
Q 001381 469 VKALHYDIRRGS--------------HSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQI--------------AP---H 517 (1089)
Q Consensus 469 ~~~L~f~~r~~~--------------~svG~~VRDAacfi~WslaR~~~~~~l~~~~~~l--------------~~---~ 517 (1089)
.++|..+++..- ..-|...=|+.-=-+|.=+|.-....+..++..+ ++ -
T Consensus 559 ~~gl~De~qkVR~itAlalsalaeaa~Pygie~fDsVlkpLwkgir~hrgk~laafLkAigyliplmd~eya~yyTrevm 638 (1172)
T KOG0213|consen 559 EHGLKDEQQKVRTITALALSALAEAATPYGIEQFDSVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYASYYTREVM 638 (1172)
T ss_pred HHhhcccchhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHccChHHHHHHHHHhhccccccHHHHHHhHHHHH
Confidence 999999986631 1223333344444445555554444443332211 11 1
Q ss_pred HHH-HHhcCCCchhhHHHHHHHHHHhcccCCCCCCc--cceeccccc-chhhhH-----HHHHHH---HHHHHh-hhcch
Q 001381 518 LLT-VACYDREVNCRRAAAAAFQENVGRQGNYPHGI--DIVNTADYF-SLSSRV-----YSYLHV---AVFIAQ-YEGYL 584 (1089)
Q Consensus 518 Ll~-~alfD~e~~iRRaAsAAlQE~vGR~g~~p~GI--~il~~~d~~-~v~~r~-----~a~~~v---a~~va~-~~~Y~ 584 (1089)
+++ .--=-|+-...+-..-.++.+.+.-|.-|.-| +++ -.|| +--+|+ +.|.++ +..+|+ .. .
T Consensus 639 lil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dil--p~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG--~ 714 (1172)
T KOG0213|consen 639 LILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDIL--PEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVG--S 714 (1172)
T ss_pred HHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhh--HHHHhhhhhhhhhccccchhhHHHHHHHHHHHhC--c
Confidence 111 11222444455555666666666666555433 222 2333 222222 223322 333332 11 2
Q ss_pred HHHHHHHHhCccCCCCHHHHHHHHHHHHHHHccCc-----hhhHHHHHHHhccccCCCChhhHHHHHHHHHHHHHHHhcc
Q 001381 585 YPFVDELLYNKICHWDKVLRELAAEALSALVKYDP-----EYFANFILEKLTPFTLSTDLCTRHGATLAAGEVVLALCKY 659 (1089)
Q Consensus 585 ~~li~~Ll~~~l~h~D~~iR~laa~aL~~L~~~~~-----~~~~~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~l~~~ 659 (1089)
.++++.++. -+.+..+..|++++.+..++...-| +...+..+..++-.++..+...- =.+++++-+..+|...
T Consensus 715 ~~~v~R~v~-~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~-vml~gfg~V~~~lg~r 792 (1172)
T KOG0213|consen 715 DPIVSRVVL-DLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDS-VMLLGFGTVVNALGGR 792 (1172)
T ss_pred hHHHHHHhh-hhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchh-hhhhhHHHHHHHHhhc
Confidence 345666654 4667888999999999999887554 23333444444433332222211 1345667777666432
Q ss_pred cccCChhHHHHHHhhhHHHHhhhhccCcchHHHHHHHHHHHHHhhhcCCCCc--hhhHHHHHHHHHHhcCCCcHHHHHHH
Q 001381 660 DYALPADKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLP--EKTKRSLLDTLNENLRHPNSQIQNAA 737 (1089)
Q Consensus 660 ~~~~~~~~~~~i~~i~~~~~~~~l~r~~~gelir~a~~~lI~~ls~~~lp~~--~~~~~~~~~~L~~~L~~~~~~V~~aA 737 (1089)
.++. +.+|+..+.. ..+.+ ...+|+-+..+|..++.. +.-+ ++...+.-.+|-+.|-...++|.-+.
T Consensus 793 ~kpy-------lpqi~stiL~--rLnnk-sa~vRqqaadlis~la~V-lktc~ee~~m~~lGvvLyEylgeeypEvLgsI 861 (1172)
T KOG0213|consen 793 VKPY-------LPQICSTILW--RLNNK-SAKVRQQAADLISSLAKV-LKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSI 861 (1172)
T ss_pred cccc-------hHHHHHHHHH--HhcCC-ChhHHHHHHHHHHHHHHH-HHhccHHHHHHHhhHHHHHhcCcccHHHHHHH
Confidence 2222 2222333221 11222 446777778888776631 1111 23556667778889999999999888
Q ss_pred HHHHHHHHHHhhhccCcchhhhhHHHHHHHhCCCChhhhhhHHHHhhcc----chHhhhhhHHHHHHHHhhhccccCCCC
Q 001381 738 VKALKPFVQTYMVAADSGVVGGISLKYMEQLTDPNPAIRRGSALALGVL----PYELLANSWRDVLLKLCSCCLIEENPE 813 (1089)
Q Consensus 738 a~Al~~l~~~y~~~~~~~~~~~~v~~~~~~L~s~~~~~r~G~a~aLG~l----p~~~~~~~~~~i~~~L~~~~~~~~~~~ 813 (1089)
-.|+.++....--..-.-.+..+++.+.-.|++.+.-....-+..+|.+ |.....-.+-+|.-.|++.++..
T Consensus 862 LgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkah---- 937 (1172)
T KOG0213|consen 862 LGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAH---- 937 (1172)
T ss_pred HHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHH----
Confidence 8888877765411100113367778887777766655555555555655 33333445667777777665311
Q ss_pred CCCHHHHHHHHHHHHHHHhhhcc
Q 001381 814 DRDTEARVNAVRGLVSVCETLTQ 836 (1089)
Q Consensus 814 ~~d~e~R~~al~sL~~i~~~~g~ 836 (1089)
.-+.|++|+.+++-|..-+|.
T Consensus 938 --kK~iRRaa~nTfG~IakaIGP 958 (1172)
T KOG0213|consen 938 --KKEIRRAAVNTFGYIAKAIGP 958 (1172)
T ss_pred --HHHHHHHHHhhhhHHHHhcCH
Confidence 258999999999988877775
No 23
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.16 E-value=0.0008 Score=80.67 Aligned_cols=357 Identities=18% Similarity=0.186 Sum_probs=210.2
Q ss_pred cCCCchhhH----HHHHHHHHHhccc-C-C-CCCCccceecccccchhhhHHHHHHHHHHHH----hhhcchHHHHHHHH
Q 001381 524 YDREVNCRR----AAAAAFQENVGRQ-G-N-YPHGIDIVNTADYFSLSSRVYSYLHVAVFIA----QYEGYLYPFVDELL 592 (1089)
Q Consensus 524 fD~e~~iRR----aAsAAlQE~vGR~-g-~-~p~GI~il~~~d~~~v~~r~~a~~~va~~va----~~~~Y~~~li~~Ll 592 (1089)
-||+..+|. |+.+++|+. |-+ + + +|-+-.-+...- ..+.++++...--.++ +++.=...+++-|+
T Consensus 27 ~d~~~~v~~~ml~a~~~~~~~~-~~~~v~~l~~~~~~~l~~~~---~~~~~~~~~v~~~~~a~~~~~~d~~~~~~~~~~~ 102 (569)
T KOG1242|consen 27 EDRRIDVRGNMLEAGEAAINQH-GDQNVLNLKPCFEQRLNSLH---NDNLRNNVVVLEGTLAFHLQIVDPRPISIIEILL 102 (569)
T ss_pred CCcchhhHHhHHHHHHHHHHhh-hHHHHHHHHHHHHHHhccch---hHHHhhhhHHHHHHHHHhccccCcchhHHHHHHH
Confidence 677777765 555565553 332 1 1 121111111111 2334444444433344 33334556777777
Q ss_pred hCccCCCCHHHHHHHHHHHHHHHccCchhhHHHHHHHhccccCCCChhhHHHHHHHHHHHHHHHhcccccCChhHHHHHH
Q 001381 593 YNKICHWDKVLRELAAEALSALVKYDPEYFANFILEKLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPADKQKIVA 672 (1089)
Q Consensus 593 ~~~l~h~D~~iR~laa~aL~~L~~~~~~~~~~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~l~~~~~~~~~~~~~~i~ 672 (1089)
. -+.-....+|+..+.+|..+.......-...+++.+.+.+...+...|+|+.-+++.+..++.-.. ..+ .
T Consensus 103 ~-~~~tps~~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~---~~~-----~ 173 (569)
T KOG1242|consen 103 E-ELDTPSKSVQRAVSTCLPPLVVLSKGLSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIES---LKE-----F 173 (569)
T ss_pred H-hcCCCcHHHHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhh---hhh-----h
Confidence 5 678899999999999999988765555556677777777778888999999999999886543110 000 1
Q ss_pred hhhHHHHhhhhccCcchHHHHH-HHHHHHHHhhhcCCCCchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhc
Q 001381 673 GIVPGIEKARLYRGKGGEIMRS-AVSRFIECISLSFVSLPEKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVA 751 (1089)
Q Consensus 673 ~i~~~~~~~~l~r~~~gelir~-a~~~lI~~ls~~~lp~~~~~~~~~~~~L~~~L~~~~~~V~~aAa~Al~~l~~~y~~~ 751 (1089)
.++..+.+. -+++....-|+ +.-.++..+..-+.+.. .-+..++..+..|..+....||.+|..|..++...+
T Consensus 174 ~~l~~l~~a--i~dk~~~~~re~~~~a~~~~~~~Lg~~~E-Pyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~--- 247 (569)
T KOG1242|consen 174 GFLDNLSKA--IIDKKSALNREAALLAFEAAQGNLGPPFE-PYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCL--- 247 (569)
T ss_pred hHHHHHHHH--hcccchhhcHHHHHHHHHHHHHhcCCCCC-chHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhc---
Confidence 122222211 12222333343 22222222222222222 223445555777789999999999999999998765
Q ss_pred cCcchhhhhHHHHHHHhCCCChhhhhhHHHHhhccchHh---hhhhHHHHHHHHhhhccccCCCCCCCHHHHHHHHHHHH
Q 001381 752 ADSGVVGGISLKYMEQLTDPNPAIRRGSALALGVLPYEL---LANSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLV 828 (1089)
Q Consensus 752 ~~~~~~~~~v~~~~~~L~s~~~~~r~G~a~aLG~lp~~~---~~~~~~~i~~~L~~~~~~~~~~~~~d~e~R~~al~sL~ 828 (1089)
+..+...+++..+..+.+..=-+..+....+|++-+.. +...+..++..|.+.. .+..+|.|..+.++|.
T Consensus 248 -~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl------~DT~~evr~a~~~~l~ 320 (569)
T KOG1242|consen 248 -SAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVL------WDTKPEVRKAGIETLL 320 (569)
T ss_pred -CcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHH------ccCCHHHHHHHHHHHH
Confidence 23445677777777664333334567777777764322 2334556666665553 5678999999999999
Q ss_pred HHHhhhccccccccccCCcchhhhhhhhHHHHHHHHHHhcccCC-CCCCCCcchHHHHHHHHHHHHHHHHhhccCCCCCC
Q 001381 829 SVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYS-VDNRGDVGSWVREAAVDGLEICTYILCKRDFVPSP 907 (1089)
Q Consensus 829 ~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~L~DYT-~D~RGDVGSwVR~aa~~~l~~l~~ll~~~~~~~~~ 907 (1089)
.++..+.+ +....+++.|++|+.|-+ .. .+|++++.+-
T Consensus 321 ~~~svidN------------------~dI~~~ip~Lld~l~dp~~~~----------~e~~~~L~~t------------- 359 (569)
T KOG1242|consen 321 KFGSVIDN------------------PDIQKIIPTLLDALADPSCYT----------PECLDSLGAT------------- 359 (569)
T ss_pred HHHHhhcc------------------HHHHHHHHHHHHHhcCcccch----------HHHHHhhcce-------------
Confidence 98876532 346789999999999976 33 4555555321
Q ss_pred CCCccccccCCCCccccccccCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 001381 908 EKPQEVKSELPGNVTAEKTLFDANLATNLVAGIVKQAVEKMDKLREAAAKVLRRI 962 (1089)
Q Consensus 908 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~llrq~~EkiD~vR~~A~~~L~~l 962 (1089)
.....+++.-..-++.-|-|-..|+--.++..+..++-.+
T Consensus 360 ---------------tFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm 399 (569)
T KOG1242|consen 360 ---------------TFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNM 399 (569)
T ss_pred ---------------eeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHH
Confidence 1223334444444555555666677666666665554443
No 24
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.11 E-value=0.072 Score=66.67 Aligned_cols=491 Identities=20% Similarity=0.205 Sum_probs=253.5
Q ss_pred hHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhCcchhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHHhcCCCCC
Q 001381 379 PDILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSLSEEVFSSVLELFSPGEGDGSWHGGCLALAELARRGLLLP 458 (1089)
Q Consensus 379 ~e~vE~iI~~ll~~L~d~dt~vR~saAK~l~rI~~~L~~~~a~~vi~~il~~l~~~~~~~~wHg~~LaLael~~~~ll~p 458 (1089)
.+.+.+++..+.+.++-..-..|...--++.+++.......-...++.++..+.+.-++...|-.-+|++-++---...|
T Consensus 646 ~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~p 725 (1233)
T KOG1824|consen 646 SPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLHVTQLAVAFLTTLAIIQP 725 (1233)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccc
Confidence 46677777777777776667788877777777777755444444555555555444466678988888887766555556
Q ss_pred CcccchHHHHHHhhhhhccccccCCChhhhhhhhHHHHHhhhccCccchhHHHHHHHHHHHHHHhcCCCc---------h
Q 001381 459 SSLPKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREV---------N 529 (1089)
Q Consensus 459 ~~l~~il~~i~~~L~f~~r~~~~svG~~VRDAacfi~WslaR~~~~~~l~~~~~~l~~~Ll~~alfD~e~---------~ 529 (1089)
..+-.+-..++..+.--. +..-.-|...-+.-.|.. +++-.-.+ .+. |. .+ ..++...+++... .
T Consensus 726 s~l~~~~~~iL~~ii~ll-~Spllqg~al~~~l~~f~-alV~t~~~-~l~-y~-~l-~s~lt~PV~~~~~~~l~kqa~~s 799 (1233)
T KOG1824|consen 726 SSLLKISNPILDEIIRLL-RSPLLQGGALSALLLFFQ-ALVITKEP-DLD-YI-SL-LSLLTAPVYEQVTDGLHKQAYYS 799 (1233)
T ss_pred HHHHHHhhhhHHHHHHHh-hCccccchHHHHHHHHHH-HHHhcCCC-Ccc-HH-HH-HHHHcCCcccccccchhHHHHHH
Confidence 554332221111111111 111223333333333321 22222111 221 22 12 2234455555444 1
Q ss_pred hhHHHHHHHHHHhcccCCCCCCcccee--cccccch--hhhHHHHHHHHH-HHHh-h-hcchHHHHHHHHhCccCCCCHH
Q 001381 530 CRRAAAAAFQENVGRQGNYPHGIDIVN--TADYFSL--SSRVYSYLHVAV-FIAQ-Y-EGYLYPFVDELLYNKICHWDKV 602 (1089)
Q Consensus 530 iRRaAsAAlQE~vGR~g~~p~GI~il~--~~d~~~v--~~r~~a~~~va~-~va~-~-~~Y~~~li~~Ll~~~l~h~D~~ 602 (1089)
|-+|+++ +-+.-+.-+. .+.+ ..|+.+- +.+.+-|.-++. .+++ . ..|...+-+-++. .++|...+
T Consensus 800 iA~cvA~-Lt~~~~~~s~-----s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~~~e~~~~iie-af~sp~ed 872 (1233)
T KOG1824|consen 800 IAKCVAA-LTCACPQKSK-----SLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSPQNELKDTIIE-AFNSPSED 872 (1233)
T ss_pred HHHHHHH-HHHhccccch-----hHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCcchhhHHHHHH-HcCCChHH
Confidence 3333322 2222121111 0111 1133320 111111111111 1121 1 2466666665554 78888888
Q ss_pred HHHHHHHHHHHHHccCchhhHHHHHHHhccccCCCChhhHHH-HHHHHHHHHHHHhcccccCChhHHHHHHhhhHHHHhh
Q 001381 603 LRELAAEALSALVKYDPEYFANFILEKLTPFTLSTDLCTRHG-ATLAAGEVVLALCKYDYALPADKQKIVAGIVPGIEKA 681 (1089)
Q Consensus 603 iR~laa~aL~~L~~~~~~~~~~~vlp~Ll~~l~~~d~~~RHG-~lLalaevl~~l~~~~~~~~~~~~~~i~~i~~~~~~~ 681 (1089)
++..||.|||.++..+. +.++|.+++...+.. -|+= .+-++-|++...+ +..+..-++.++.
T Consensus 873 vksAAs~ALGsl~vgnl----~~yLpfil~qi~sqp--k~QyLLLhSlkevi~~~s----------vd~~~~~v~~IW~- 935 (1233)
T KOG1824|consen 873 VKSAASYALGSLAVGNL----PKYLPFILEQIESQP--KRQYLLLHSLKEVIVSAS----------VDGLKPYVEKIWA- 935 (1233)
T ss_pred HHHHHHHHhhhhhcCch----HhHHHHHHHHHhcch--HhHHHHHHHHHHHHHHhc----------cchhhhhHHHHHH-
Confidence 88888888888887542 235666666554431 1221 2223555554322 1123333444442
Q ss_pred hhccC-cc-hHHHHHHHHHHHHHhhhcCCCCchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCcchhh-
Q 001381 682 RLYRG-KG-GEIMRSAVSRFIECISLSFVSLPEKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVG- 758 (1089)
Q Consensus 682 ~l~r~-~~-gelir~a~~~lI~~ls~~~lp~~~~~~~~~~~~L~~~L~~~~~~V~~aAa~Al~~l~~~y~~~~~~~~~~- 758 (1089)
-+|+. .+ -|-.|..++.-++.++... | +.+..-|...++.+.+..+..++.|++ |.-.+..+.++
T Consensus 936 lL~k~cE~~eegtR~vvAECLGkL~l~e-p------esLlpkL~~~~~S~a~~~rs~vvsavK-----fsisd~p~~id~ 1003 (1233)
T KOG1824|consen 936 LLFKHCECAEEGTRNVVAECLGKLVLIE-P------ESLLPKLKLLLRSEASNTRSSVVSAVK-----FSISDQPQPIDP 1003 (1233)
T ss_pred HHHHhcccchhhhHHHHHHHhhhHHhCC-h------HHHHHHHHHHhcCCCcchhhhhhheee-----eeecCCCCccCH
Confidence 23332 22 3346777777777765322 1 234444666778888888888877774 22223344444
Q ss_pred ---hhHHHHHHHhCCCChhhhhhHHHHhhccch---HhhhhhHHHHHHHHhhhcccc----------CC--CCCCCHHHH
Q 001381 759 ---GISLKYMEQLTDPNPAIRRGSALALGVLPY---ELLANSWRDVLLKLCSCCLIE----------EN--PEDRDTEAR 820 (1089)
Q Consensus 759 ---~~v~~~~~~L~s~~~~~r~G~a~aLG~lp~---~~~~~~~~~i~~~L~~~~~~~----------~~--~~~~d~e~R 820 (1089)
+.+..|+..+++++..+||-+-.++.+.-. ...++-++.++..|...++.. +. .-+.--+-|
T Consensus 1004 ~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIrDllpeLLp~Ly~eTkvrkelIreVeMGPFKH~VDdgLd~R 1083 (1233)
T KOG1824|consen 1004 LLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIRDLLPELLPLLYSETKVRKELIREVEMGPFKHTVDDGLDLR 1083 (1233)
T ss_pred HHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHhhhhhHhhhhhhcccCccccccchHHHH
Confidence 445578888899999999977777665532 223344455555554443211 11 112345899
Q ss_pred HHHHHHHHHHHhhhccccccccccCCcchhhhhhhhHHHHHHHHHHhcccCCCCCCCCcchHHHHHHHHHHHHHHHHhhc
Q 001381 821 VNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEICTYILCK 900 (1089)
Q Consensus 821 ~~al~sL~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~L~DYT~D~RGDVGSwVR~aa~~~l~~l~~ll~~ 900 (1089)
+.|-+++-.++..- +......++++....||.|- - | ++.-+.--++.+ +
T Consensus 1084 KaaFEcmytLLdsc-----------------ld~~dit~Fl~~~~~GL~Dh-y----d----iKmlt~l~l~rL----a- 1132 (1233)
T KOG1824|consen 1084 KAAFECMYTLLDSC-----------------LDRLDITEFLNHVEDGLEDH-Y----D----IKMLTFLMLARL----A- 1132 (1233)
T ss_pred HHHHHHHHHHHHhh-----------------hhhccHHHHHHHHHhhcchh-h----H----HHHHHHHHHHHH----H-
Confidence 99999988776431 11245677899999999882 1 2 344333333322 1
Q ss_pred cCCCCCCCCCccccccCCCCccccccccCHHHHHHHH------------HHHHHHhhhhhHHHHHHHHHHHHHHhh
Q 001381 901 RDFVPSPEKPQEVKSELPGNVTAEKTLFDANLATNLV------------AGIVKQAVEKMDKLREAAAKVLRRILY 964 (1089)
Q Consensus 901 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~------------~~llrq~~EkiD~vR~~A~~~L~~l~~ 964 (1089)
..-|+.+. ..+++++ ++-+||=.||+|.+...|.+++..++.
T Consensus 1133 ---------------------~lcPs~Vl-qrlD~l~EpLr~t~~~k~k~~svKqE~ek~~eLkRSAlRav~~L~~ 1186 (1233)
T KOG1824|consen 1133 ---------------------DLCPSAVL-QRLDRLVEPLRKTCTLKVKANSVKQEFEKQDELKRSALRAVAALLT 1186 (1233)
T ss_pred ---------------------hhCcHHHH-HHHHHHHHHHHHHhhcccccchHhHhHHHHHHHHHHHHHHHHHHhc
Confidence 00111110 1112222 356899999999999999999998843
No 25
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.09 E-value=0.0021 Score=87.26 Aligned_cols=329 Identities=14% Similarity=0.071 Sum_probs=184.7
Q ss_pred CCChhhhhhhhHHHHHhhhccCccchhHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHh----------cccCCCCCC
Q 001381 482 SVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAAAAAFQENV----------GRQGNYPHG 551 (1089)
Q Consensus 482 svG~~VRDAacfi~WslaR~~~~~~l~~~~~~l~~~Ll~~alfD~e~~iRRaAsAAlQE~v----------GR~g~~p~G 551 (1089)
+-|..++..+|..+|.++..-. +....+...-+...++.-+-..+..+|+.|..++.-+. ...|.+|.=
T Consensus 415 ~~~~evQ~~Av~aL~~L~~~~~-e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~L 493 (2102)
T PLN03200 415 MATADVQEELIRALSSLCCGKG-GLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPL 493 (2102)
T ss_pred cCCHHHHHHHHHHHHHHhCCCH-HHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHH
Confidence 4467888999999999886622 23344555556667777777788999999988874433 223445544
Q ss_pred ccceecccccchhhhHHHHHHHHHHHHhhhcch-----HHHHHHHHhCccCCCCHHHHHHHHHHHHHHHccCchhhHHHH
Q 001381 552 IDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYL-----YPFVDELLYNKICHWDKVLRELAAEALSALVKYDPEYFANFI 626 (1089)
Q Consensus 552 I~il~~~d~~~v~~r~~a~~~va~~va~~~~Y~-----~~li~~Ll~~~l~h~D~~iR~laa~aL~~L~~~~~~~~~~~v 626 (1089)
+.++..-|.- .+.+|-.-++..-+.-+... ...++.|++ .+.+-|.++++-|+.+|.+|+...... .
T Consensus 494 V~LL~s~~~~---iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~-LL~sgd~~~q~~Aa~AL~nLi~~~d~~----~ 565 (2102)
T PLN03200 494 VQLLETGSQK---AKEDSATVLWNLCCHSEDIRACVESAGAVPALLW-LLKNGGPKGQEIAAKTLTKLVRTADAA----T 565 (2102)
T ss_pred HHHHcCCCHH---HHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHH-HHhCCCHHHHHHHHHHHHHHHhccchh----H
Confidence 4555543322 12221111111100000111 123444444 355678999999999999998643222 3
Q ss_pred HHHhccccCCCChhhHHHHHHHHHHHHHHHhcccccCChhHHHHH---HhhhHHHHhhhhccCcchHHHHHHHHHHHHHh
Q 001381 627 LEKLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPADKQKIV---AGIVPGIEKARLYRGKGGEIMRSAVSRFIECI 703 (1089)
Q Consensus 627 lp~Ll~~l~~~d~~~RHG~lLalaevl~~l~~~~~~~~~~~~~~i---~~i~~~~~~~~l~r~~~gelir~a~~~lI~~l 703 (1089)
++.+...+.+++...+.=++-+++.++..... .+..... .+-++.+.+ +.+. +.+-+++.+|..|..+
T Consensus 566 I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~------~d~~~~g~~~~ggL~~Lv~--LL~s-gs~~ikk~Aa~iLsnL 636 (2102)
T PLN03200 566 ISQLTALLLGDLPESKVHVLDVLGHVLSVASL------EDLVREGSAANDALRTLIQ--LLSS-SKEETQEKAASVLADI 636 (2102)
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHhhcch------hHHHHHhhhccccHHHHHH--HHcC-CCHHHHHHHHHHHHHH
Confidence 45666667666655555456666666543221 1100000 011222211 1111 3456677777888877
Q ss_pred hhcCCCCchhh-HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCcc-hhhhhHHHHHHHhCCCChhhhhhHHH
Q 001381 704 SLSFVSLPEKT-KRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSG-VVGGISLKYMEQLTDPNPAIRRGSAL 781 (1089)
Q Consensus 704 s~~~lp~~~~~-~~~~~~~L~~~L~~~~~~V~~aAa~Al~~l~~~y~~~~~~~-~~~~~v~~~~~~L~s~~~~~r~G~a~ 781 (1089)
+..+.+....+ ...-...+-..|++.+.+++..|+.|+..++.......... .....++-+++.|++++.....-++.
T Consensus 637 ~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ 716 (2102)
T PLN03200 637 FSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVC 716 (2102)
T ss_pred hcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHH
Confidence 75443322221 12223334455688999999999999998885321110000 11457888999998887777777777
Q ss_pred HhhccchHh---hhhhHHHHHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHhhh
Q 001381 782 ALGVLPYEL---LANSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETL 834 (1089)
Q Consensus 782 aLG~lp~~~---~~~~~~~i~~~L~~~~~~~~~~~~~d~e~R~~al~sL~~i~~~~ 834 (1089)
||+.+-..- ..-....++..|++.++ ....+.|.+|..+|.++|...
T Consensus 717 ALanLl~~~e~~~ei~~~~~I~~Lv~lLr------~G~~~~k~~Aa~AL~~L~~~~ 766 (2102)
T PLN03200 717 ALANLLSDPEVAAEALAEDIILPLTRVLR------EGTLEGKRNAARALAQLLKHF 766 (2102)
T ss_pred HHHHHHcCchHHHHHHhcCcHHHHHHHHH------hCChHHHHHHHHHHHHHHhCC
Confidence 777763221 10001233455555543 234689999999999998753
No 26
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=97.89 E-value=0.14 Score=62.60 Aligned_cols=324 Identities=16% Similarity=0.108 Sum_probs=187.3
Q ss_pred HHHHhcCCCchhhHHHHHHHHHHhcccCCCCCCcccee-------cc---cccchhhhHHHHHHHHHHHH-hhhcchHHH
Q 001381 519 LTVACYDREVNCRRAAAAAFQENVGRQGNYPHGIDIVN-------TA---DYFSLSSRVYSYLHVAVFIA-QYEGYLYPF 587 (1089)
Q Consensus 519 l~~alfD~e~~iRRaAsAAlQE~vGR~g~~p~GI~il~-------~~---d~~~v~~r~~a~~~va~~va-~~~~Y~~~l 587 (1089)
++.-+.|...--|+-...+.--.+||+|.--.|-.+.+ .+ +--+.+..-+.|-.|...+. +-..|...|
T Consensus 721 ~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~kpylpqi 800 (1172)
T KOG0213|consen 721 VVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRVKPYLPQI 800 (1172)
T ss_pred HhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhccccchHHH
Confidence 45678899999999999999999999986422111111 00 11122333344444444443 335788899
Q ss_pred HHHHHhCccCCCCHHHHHHHHHHHHHHHccCc---h-hhHHHHHHHhccccCCCChhhHHHHHHHHHHHHHHH--hcccc
Q 001381 588 VDELLYNKICHWDKVLRELAAEALSALVKYDP---E-YFANFILEKLTPFTLSTDLCTRHGATLAAGEVVLAL--CKYDY 661 (1089)
Q Consensus 588 i~~Ll~~~l~h~D~~iR~laa~aL~~L~~~~~---~-~~~~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~l--~~~~~ 661 (1089)
+...+. .|.|..+.+|+-||..++.|+.... + .+..+.=-.|-+.+.....++--..+=|+..|.... ++..-
T Consensus 801 ~stiL~-rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~p 879 (1172)
T KOG0213|consen 801 CSTILW-RLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTP 879 (1172)
T ss_pred HHHHHH-HhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCC
Confidence 888885 6889999999999999999876321 1 122111111112222222222221111223322211 11110
Q ss_pred cCChhHHHHHHhhhHHHHhhhhccCcchHHHHHHHHHHHHHhhhcCCCCchhhHHHHHHH---HHHhcCCCcHHHHHHHH
Q 001381 662 ALPADKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLPEKTKRSLLDT---LNENLRHPNSQIQNAAV 738 (1089)
Q Consensus 662 ~~~~~~~~~i~~i~~~~~~~~l~r~~~gelir~a~~~lI~~ls~~~lp~~~~~~~~~~~~---L~~~L~~~~~~V~~aAa 738 (1089)
+ -.+...++..|+.+ + -+-+-+.+..|++.+|..+... --...|..+ |.+.|+....++|.+|.
T Consensus 880 P-i~dllPrltPILkn----r------heKVqen~IdLvg~IadrgpE~--v~aREWMRIcfeLlelLkahkK~iRRaa~ 946 (1172)
T KOG0213|consen 880 P-IKDLLPRLTPILKN----R------HEKVQENCIDLVGTIADRGPEY--VSAREWMRICFELLELLKAHKKEIRRAAV 946 (1172)
T ss_pred C-hhhhcccchHhhhh----h------HHHHHHHHHHHHHHHHhcCccc--CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 11222333333332 1 2346667788888887533211 123567765 45667888899999999
Q ss_pred HHHHHHHHHhhhccCcchhhhhHHHHHHHhCCCChhhhhhHHHHhhccchHhhhhhHHHHHHHHhhhccccCCCCCCCHH
Q 001381 739 KALKPFVQTYMVAADSGVVGGISLKYMEQLTDPNPAIRRGSALALGVLPYELLANSWRDVLLKLCSCCLIEENPEDRDTE 818 (1089)
Q Consensus 739 ~Al~~l~~~y~~~~~~~~~~~~v~~~~~~L~s~~~~~r~G~a~aLG~lp~~~~~~~~~~i~~~L~~~~~~~~~~~~~d~e 818 (1089)
+.|..+.+..-. ..++..+++.|+.....-|-|...|++.....- . ...++..|...-+ .....
T Consensus 947 nTfG~IakaIGP-------qdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c-~--pFtVLPalmneYr------tPe~n 1010 (1172)
T KOG0213|consen 947 NTFGYIAKAIGP-------QDVLATLLNNLKVQERQNRVCTTVAIAIVAETC-G--PFTVLPALMNEYR------TPEAN 1010 (1172)
T ss_pred hhhhHHHHhcCH-------HHHHHHHHhcchHHHHHhchhhhhhhhhhhhhc-C--chhhhHHHHhhcc------CchhH
Confidence 999877765421 688899999998665556666667765553210 0 1124555544421 12345
Q ss_pred HHHHHHHHHHHHHhhhccccccccccCCcchhhhhhhhHHHHHHHHHHhcccCCCCCCCCcchHHHHHHHHHHHHHH
Q 001381 819 ARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEICT 895 (1089)
Q Consensus 819 ~R~~al~sL~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~L~DYT~D~RGDVGSwVR~aa~~~l~~l~ 895 (1089)
.-...++|++-+++.+|.. ..+++-.+...|-.+|-|-. --=|.-|+.+++.+.
T Consensus 1011 VQnGVLkalsf~Feyigem---------------skdYiyav~PlleDAlmDrD--------~vhRqta~~~I~Hl~ 1064 (1172)
T KOG0213|consen 1011 VQNGVLKALSFMFEYIGEM---------------SKDYIYAVTPLLEDALMDRD--------LVHRQTAMNVIKHLA 1064 (1172)
T ss_pred HHHhHHHHHHHHHHHHHHH---------------hhhHHHHhhHHHHHhhcccc--------HHHHHHHHHHHHHHh
Confidence 5667889999999888743 34667777888888886631 125888888887763
No 27
>PTZ00429 beta-adaptin; Provisional
Probab=97.67 E-value=0.053 Score=68.80 Aligned_cols=293 Identities=13% Similarity=0.109 Sum_probs=164.4
Q ss_pred HHHHHHHHHHHHhcCCCchhhHHHHHHHHHHhcccCCCCCCccceecccccchhhhHHHHHHHHHHHHhhhcchHHHHHH
Q 001381 511 LEQIAPHLLTVACYDREVNCRRAAAAAFQENVGRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDE 590 (1089)
Q Consensus 511 ~~~l~~~Ll~~alfD~e~~iRRaAsAAlQE~vGR~g~~p~GI~il~~~d~~~v~~r~~a~~~va~~va~~~~Y~~~li~~ 590 (1089)
+-.++.+-+..-+-|++..||--|...+ |.... ++..+.++..
T Consensus 102 lalLaINtl~KDl~d~Np~IRaLALRtL----s~Ir~---------------------------------~~i~e~l~~~ 144 (746)
T PTZ00429 102 KALLAVNTFLQDTTNSSPVVRALAVRTM----MCIRV---------------------------------SSVLEYTLEP 144 (746)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHH----HcCCc---------------------------------HHHHHHHHHH
Confidence 3456777788899999999999888874 33321 1233344444
Q ss_pred HHhCccCCCCHHHHHHHHHHHHHHHccCchhhH-HHHHHHhccccCCCChhhHHHHHHHHHHHHHHH-----------hc
Q 001381 591 LLYNKICHWDKVLRELAAEALSALVKYDPEYFA-NFILEKLTPFTLSTDLCTRHGATLAAGEVVLAL-----------CK 658 (1089)
Q Consensus 591 Ll~~~l~h~D~~iR~laa~aL~~L~~~~~~~~~-~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~l-----------~~ 658 (1089)
+.+ .+.|.++.+|+-||-|+.++...+|+.+. ...++.+.+.+.+.|..+.-.++.++.++...- .+
T Consensus 145 lkk-~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~ 223 (746)
T PTZ00429 145 LRR-AVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNR 223 (746)
T ss_pred HHH-HhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHH
Confidence 443 67899999999999999999988887543 245667777677777777777777777774321 00
Q ss_pred c---cccCChhHHHHHHh---------------hhHHHHhhhhccCcchHHHHHHHHHHHHHhhhcCCCCchhhHHH---
Q 001381 659 Y---DYALPADKQKIVAG---------------IVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLPEKTKRS--- 717 (1089)
Q Consensus 659 ~---~~~~~~~~~~~i~~---------------i~~~~~~~~l~r~~~gelir~a~~~lI~~ls~~~lp~~~~~~~~--- 717 (1089)
. ....+++..-.+.+ ++..+. .++. ...+.++-+ +++++-.+... . ..+....
T Consensus 224 Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~~~il~~l~-~~Lq-~~N~AVVl~-Aik~il~l~~~-~--~~~~~~~~~~ 297 (746)
T PTZ00429 224 LVYHLPECNEWGQLYILELLAAQRPSDKESAETLLTRVL-PRMS-HQNPAVVMG-AIKVVANLASR-C--SQELIERCTV 297 (746)
T ss_pred HHHHhhcCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHH-HHhc-CCCHHHHHH-HHHHHHHhcCc-C--CHHHHHHHHH
Confidence 0 00111221111111 222221 1111 122333333 33333333211 0 1122222
Q ss_pred -HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCcchhhhhHHHHHHHh----CCCChhhhhhHHHHhhccchHhhh
Q 001381 718 -LLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQL----TDPNPAIRRGSALALGVLPYELLA 792 (1089)
Q Consensus 718 -~~~~L~~~L~~~~~~V~~aAa~Al~~l~~~y~~~~~~~~~~~~v~~~~~~L----~s~~~~~r~G~a~aLG~lp~~~~~ 792 (1089)
....+ -.|.+.+.++|..+-..+..+...+ ..++...++.+ .+... .+. ..|-.+....-.
T Consensus 298 rl~~pL-v~L~ss~~eiqyvaLr~I~~i~~~~---------P~lf~~~~~~Ff~~~~Dp~y-IK~---~KLeIL~~Lane 363 (746)
T PTZ00429 298 RVNTAL-LTLSRRDAETQYIVCKNIHALLVIF---------PNLLRTNLDSFYVRYSDPPF-VKL---EKLRLLLKLVTP 363 (746)
T ss_pred HHHHHH-HHhhCCCccHHHHHHHHHHHHHHHC---------HHHHHHHHHhhhcccCCcHH-HHH---HHHHHHHHHcCc
Confidence 11211 1345667888988887776666543 23333334332 33333 232 233333333333
Q ss_pred hhHHHHHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHhhhccccccccccCCcchhhhhhhhHHHHHHHHHHhcccCC
Q 001381 793 NSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYS 872 (1089)
Q Consensus 793 ~~~~~i~~~L~~~~~~~~~~~~~d~e~R~~al~sL~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~L~DYT 872 (1089)
.....|++.|..-+ ...|.+.|+.++++++.+..++. .....+++.|++.+++
T Consensus 364 ~Nv~~IL~EL~eYa------~d~D~ef~r~aIrAIg~lA~k~~-------------------~~a~~cV~~Ll~ll~~-- 416 (746)
T PTZ00429 364 SVAPEILKELAEYA------SGVDMVFVVEVVRAIASLAIKVD-------------------SVAPDCANLLLQIVDR-- 416 (746)
T ss_pred ccHHHHHHHHHHHh------hcCCHHHHHHHHHHHHHHHHhCh-------------------HHHHHHHHHHHHHhcC--
Confidence 45677888887654 45689999999999999875431 3456778888877754
Q ss_pred CCCCCCcchHHHHHHHHHHHHHH
Q 001381 873 VDNRGDVGSWVREAAVDGLEICT 895 (1089)
Q Consensus 873 ~D~RGDVGSwVR~aa~~~l~~l~ 895 (1089)
++++ |. +++..++.++
T Consensus 417 ---~~~~---v~-e~i~vik~Il 432 (746)
T PTZ00429 417 ---RPEL---LP-QVVTAAKDIV 432 (746)
T ss_pred ---Cchh---HH-HHHHHHHHHH
Confidence 3443 43 4677777664
No 28
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=97.59 E-value=0.097 Score=62.47 Aligned_cols=384 Identities=14% Similarity=0.133 Sum_probs=199.0
Q ss_pred HHHHhhcCCCCh---hHHHHHHHHHHHHHhhhCcchhhhHHHHHHhhcCC----CCCCcchHHHHHHHHHHHhcCCCCC-
Q 001381 387 EILLSGLRDTDT---VVRWSAAKGIGRITSCLTSSLSEEVFSSVLELFSP----GEGDGSWHGGCLALAELARRGLLLP- 458 (1089)
Q Consensus 387 ~~ll~~L~d~dt---~vR~saAK~l~rI~~~L~~~~a~~vi~~il~~l~~----~~~~~~wHg~~LaLael~~~~ll~p- 458 (1089)
+.|+..|.|.++ .-.+..=++|+.++.. ++..+.++..+++.++. ..+..--|..|.++..+...+.--.
T Consensus 2 p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~--~~i~~~~~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~ 79 (415)
T PF12460_consen 2 PALLALLPDSDSSTDSNYERILEALAALSTS--PQILETLSIRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQ 79 (415)
T ss_pred chHHhhCCCCCCcchhHHHHHHHHHHHHHCC--hhHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccccc
Confidence 345666666555 4555566666666643 45566677777776632 2233446888888888877764222
Q ss_pred --C---cccc-hHHHHHHhhhhhccccccCCChhhhhhhhHHHHHhhhccCccchhHHHHHHHHHHHHHHhcCCCchhhH
Q 001381 459 --S---SLPK-VVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRR 532 (1089)
Q Consensus 459 --~---~l~~-il~~i~~~L~f~~r~~~~svG~~VRDAacfi~WslaR~~~~~~l~~~~~~l~~~Ll~~alfD~e~~iRR 532 (1089)
. +..+ ++|.+.+........... ...++=+.+.-++-.+.|..+++.=+..++.+....+
T Consensus 80 ~~~~~~y~~~~lv~~l~~~~~~~~~~~~~-~~~~~L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~------------- 145 (415)
T PF12460_consen 80 FEDNSWYFHRILVPRLFELALQASDQSSD-LDDRVLELLSRLINLIVRSLSPEKQQEILDELYSLFL------------- 145 (415)
T ss_pred cchHHHHHHhHHHHHHHHHHHhhcccccc-cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHc-------------
Confidence 1 2233 566665544333322222 2356667778888888888886543333333322222
Q ss_pred HHHHHHHHHhcccCCCCCCccceecccccchhhhHHHHHHH-HHHHHhhh-----cchHHHHHHHHhCccCCCCHHHHHH
Q 001381 533 AAAAAFQENVGRQGNYPHGIDIVNTADYFSLSSRVYSYLHV-AVFIAQYE-----GYLYPFVDELLYNKICHWDKVLREL 606 (1089)
Q Consensus 533 aAsAAlQE~vGR~g~~p~GI~il~~~d~~~v~~r~~a~~~v-a~~va~~~-----~Y~~~li~~Ll~~~l~h~D~~iR~l 606 (1089)
..+-+..++..-.- .......+..+ +..++..+ .+...+++.++.......|...|..
T Consensus 146 --------~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~ 209 (415)
T PF12460_consen 146 --------SPKSFSPFQPSSST--------ISEQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLA 209 (415)
T ss_pred --------cccccCCCCccccc--------cccccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHH
Confidence 01112222111100 00011112221 22333321 1455577777775566777999999
Q ss_pred HHHHHHHHHccCch-hhHHHHHHHhcccc-CCCChhhHHHHHHHHHHHHHHHhcccccCChhHHHHHHhhhHHHHhhhhc
Q 001381 607 AAEALSALVKYDPE-YFANFILEKLTPFT-LSTDLCTRHGATLAAGEVVLALCKYDYALPADKQKIVAGIVPGIEKARLY 684 (1089)
Q Consensus 607 aa~aL~~L~~~~~~-~~~~~vlp~Ll~~l-~~~d~~~RHG~lLalaevl~~l~~~~~~~~~~~~~~i~~i~~~~~~~~l~ 684 (1089)
+++.++-++++.+. ...+.++..+.... ...+...|.+++..+.-+..|+--...+...+....+.+++..
T Consensus 210 ~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~------- 282 (415)
T PF12460_consen 210 ALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELLSS------- 282 (415)
T ss_pred HHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC-------
Confidence 99999999998532 23445566665555 4455566777776666666665322222222222221111111
Q ss_pred cCcchHHHHHHHHHHHHHhhhcCCCCchhhHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHH-HHhhhccCcchhhhhHH
Q 001381 685 RGKGGEIMRSAVSRFIECISLSFVSLPEKTKRSLLDTLNENLR-HPNSQIQNAAVKALKPFV-QTYMVAADSGVVGGISL 762 (1089)
Q Consensus 685 r~~~gelir~a~~~lI~~ls~~~lp~~~~~~~~~~~~L~~~L~-~~~~~V~~aAa~Al~~l~-~~y~~~~~~~~~~~~v~ 762 (1089)
+-+...+++-++-+... .++.+. .....|+ .+. +.+| ..+++
T Consensus 283 -----~~~g~~aA~~f~il~~d---------------~~~~l~~~~~a~vk--------lLykQR~F--------~~~~p 326 (415)
T PF12460_consen 283 -----PELGQQAAKAFGILLSD---------------SDDVLNKENHANVK--------LLYKQRFF--------TQVLP 326 (415)
T ss_pred -----hhhHHHHHHHHhhHhcC---------------cHHhcCccccchhh--------hHHhHHHH--------HHHHH
Confidence 01111222222111100 000000 0011111 111 1111 45666
Q ss_pred HHHHHhCCCChhh----hhhHHHHhhccchHhhhhhHHHHHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHhhhcccc
Q 001381 763 KYMEQLTDPNPAI----RRGSALALGVLPYELLANSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQSQ 838 (1089)
Q Consensus 763 ~~~~~L~s~~~~~----r~G~a~aLG~lp~~~~~~~~~~i~~~L~~~~~~~~~~~~~d~e~R~~al~sL~~i~~~~g~~~ 838 (1089)
.+++..+..+... ..+.+..|..+|+.++.+++.+++..|+.+. +..|.+.|.++++.|..++..-.
T Consensus 327 ~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL------~~~~~~v~~s~L~tL~~~l~~~~--- 397 (415)
T PF12460_consen 327 KLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSL------SLPDADVLLSSLETLKMILEEAP--- 397 (415)
T ss_pred HHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHHHcCH---
Confidence 6776665433223 4444555556688888888999999998886 45677899999999998775321
Q ss_pred ccccccCCcchhhhhhhhHHHHHHHHHH
Q 001381 839 ENSLIHSGEDEISLFHLIKNEVMTSLFK 866 (1089)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~~~~i~~~Ll~ 866 (1089)
....+.+..+++.|++
T Consensus 398 ------------~~i~~hl~sLI~~LL~ 413 (415)
T PF12460_consen 398 ------------ELISEHLSSLIPRLLK 413 (415)
T ss_pred ------------HHHHHHHHHHHHHHHh
Confidence 2333566666666654
No 29
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.56 E-value=0.06 Score=64.48 Aligned_cols=332 Identities=18% Similarity=0.187 Sum_probs=198.3
Q ss_pred HHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhCc----chhhhHHHHHHhhcCCCCCCcchHH-----HHHHHHHH
Q 001381 380 DILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTS----SLSEEVFSSVLELFSPGEGDGSWHG-----GCLALAEL 450 (1089)
Q Consensus 380 e~vE~iI~~ll~~L~d~dt~vR~saAK~l~rI~~~L~~----~~a~~vi~~il~~l~~~~~~~~wHg-----~~LaLael 450 (1089)
..+..||+..|..|+++.+.||--||+-.|.++..|.. ++-.-+=.-+.+.+. +.+...-| .|-+-.-.
T Consensus 600 p~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lg--e~ypEvLgsil~Ai~~I~sv~ 677 (975)
T COG5181 600 PHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLG--EDYPEVLGSILKAICSIYSVH 677 (975)
T ss_pred cchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcC--cccHHHHHHHHHHHHHHhhhh
Confidence 56788999999999999999999999999999888752 111111111222221 22222222 22222223
Q ss_pred HhcCCCCCC--cccchHHHHHHhhhhhccccccCCChhhhhhhhHHHHHhhhccCcc-chhHHHHHHHHHHHHHHhcCCC
Q 001381 451 ARRGLLLPS--SLPKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHT-DMRNILEQIAPHLLTVACYDRE 527 (1089)
Q Consensus 451 ~~~~ll~p~--~l~~il~~i~~~L~f~~r~~~~svG~~VRDAacfi~WslaR~~~~~-~l~~~~~~l~~~Ll~~alfD~e 527 (1089)
..+.+.||- .||.+.|++..- .++ .+-+.| | + .--++.+-+.. -....+ .|...| +.++---+
T Consensus 678 ~~~~mqpPi~~ilP~ltPILrnk----h~K---v~~nti-~---l-vg~I~~~~peyi~~rEWM-RIcfeL-vd~Lks~n 743 (975)
T COG5181 678 RFRSMQPPISGILPSLTPILRNK----HQK---VVANTI-A---L-VGTICMNSPEYIGVREWM-RICFEL-VDSLKSWN 743 (975)
T ss_pred cccccCCchhhccccccHhhhhh----hHH---HhhhHH-H---H-HHHHHhcCcccCCHHHHH-HHHHHH-HHHHHHhh
Confidence 344555554 478888887311 000 100101 0 0 11111111110 011222 233443 35666667
Q ss_pred chhhHHHHHHHHHHhcccCCCCCCccceecccccchhhhHHHHHHHHHHHHhhhcchHHHHHHHHhCccCCCCHHHHHHH
Q 001381 528 VNCRRAAAAAFQENVGRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNKICHWDKVLRELA 607 (1089)
Q Consensus 528 ~~iRRaAsAAlQE~vGR~g~~p~GI~il~~~d~~~v~~r~~a~~~va~~va~~~~Y~~~li~~Ll~~~l~h~D~~iR~la 607 (1089)
-.|||+|.+.|.-+---.| | +.+++.|++ +|..-|...|--+
T Consensus 744 KeiRR~A~~tfG~Is~aiG--P-----------------------------------qdvL~~Lln-nLkvqeRq~Rvct 785 (975)
T COG5181 744 KEIRRNATETFGCISRAIG--P-----------------------------------QDVLDILLN-NLKVQERQQRVCT 785 (975)
T ss_pred HHHHHhhhhhhhhHHhhcC--H-----------------------------------HHHHHHHHh-cchHHHHHhhhhh
Confidence 7899999998743211012 1 246777775 6778888899999
Q ss_pred HHHHHHHHccCchhhHHHHHHHhccccCCCChhhHHHHHHHHHHHHHHHhcccccCChhHHHHHHhhhHHHHhhhhccCc
Q 001381 608 AEALSALVKYDPEYFANFILEKLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPADKQKIVAGIVPGIEKARLYRGK 687 (1089)
Q Consensus 608 a~aL~~L~~~~~~~~~~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~l~~~~~~~~~~~~~~i~~i~~~~~~~~l~r~~ 687 (1089)
+-|++..+....- -.++|.++....+++.++..|.+-|++-+..-.. +...+.+-.+.+-++++-.=
T Consensus 786 svaI~iVae~cgp---fsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig-------~~s~dYvy~itPlleDAltD--- 852 (975)
T COG5181 786 SVAISIVAEYCGP---FSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIG-------QASLDYVYSITPLLEDALTD--- 852 (975)
T ss_pred hhhhhhhHhhcCc---hhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHH-------HHHHHHHHHhhHHHHhhhcc---
Confidence 9999888876633 3689999999999999999999999998887664 33334444555555543211
Q ss_pred chHHHHHHHHHHHHHhhhcCCCC--chhhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCcchhhhhHHHHH
Q 001381 688 GGEIMRSAVSRFIECISLSFVSL--PEKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYM 765 (1089)
Q Consensus 688 ~gelir~a~~~lI~~ls~~~lp~--~~~~~~~~~~~L~~~L~~~~~~V~~aAa~Al~~l~~~y~~~~~~~~~~~~v~~~~ 765 (1089)
....-|+.++.+|.-++.. -|. ..+..-+++.+|--++-.+++.|+.+.-+++..+.+..-+ ..+.+-..
T Consensus 853 rD~vhRqta~nvI~Hl~Ln-c~gtg~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~lg~-------g~~m~Yv~ 924 (975)
T COG5181 853 RDPVHRQTAMNVIRHLVLN-CPGTGDEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESFATVLGS-------GAMMKYVQ 924 (975)
T ss_pred cchHHHHHHHHHHHHHhcC-CCCcccHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHhcc-------HHHHHHHH
Confidence 2346788899999877753 222 2344556677777777888999999999998888765411 23333333
Q ss_pred HHhCCCChhhhhhHHHHhhcc
Q 001381 766 EQLTDPNPAIRRGSALALGVL 786 (1089)
Q Consensus 766 ~~L~s~~~~~r~G~a~aLG~l 786 (1089)
++|-......|..|...+...
T Consensus 925 qGLFHPs~~VRk~ywtvyn~m 945 (975)
T COG5181 925 QGLFHPSSTVRKRYWTVYNIM 945 (975)
T ss_pred HhccCchHHHHHHHHHHHhhh
Confidence 456555566677666554333
No 30
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.53 E-value=0.19 Score=60.42 Aligned_cols=261 Identities=15% Similarity=0.095 Sum_probs=149.8
Q ss_pred cchHHHHHHHHhCccCCCCHHHHHHHHHHHHHHHccC---chhhHHHHHHHh-ccccCCCChhhHHHHHHHHHHHHHH--
Q 001381 582 GYLYPFVDELLYNKICHWDKVLRELAAEALSALVKYD---PEYFANFILEKL-TPFTLSTDLCTRHGATLAAGEVVLA-- 655 (1089)
Q Consensus 582 ~Y~~~li~~Ll~~~l~h~D~~iR~laa~aL~~L~~~~---~~~~~~~vlp~L-l~~l~~~d~~~RHG~lLalaevl~~-- 655 (1089)
.|...++...+. .|.|.-+.+|+-||...+.|++.- ++.-.-..+..+ -+.+...+.++--..+-|+..+...
T Consensus 600 p~l~~ivStiL~-~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~ 678 (975)
T COG5181 600 PHLSMIVSTILK-LLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHR 678 (975)
T ss_pred cchHHHHHHHHH-HhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhc
Confidence 688889988886 788999999999999888887632 221111111111 2233333333322222233333321
Q ss_pred HhcccccCChhHHHHHHhhhHHHHhhhhccCcchHHHHHHHHHHHHHhhhcCCCCchhhHHHHHHH---HHHhcCCCcHH
Q 001381 656 LCKYDYALPADKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLPEKTKRSLLDT---LNENLRHPNSQ 732 (1089)
Q Consensus 656 l~~~~~~~~~~~~~~i~~i~~~~~~~~l~r~~~gelir~a~~~lI~~ls~~~lp~~~~~~~~~~~~---L~~~L~~~~~~ 732 (1089)
+++.+ ++ +.+|++.+. ...|.+-.. +-.....|++.+|..+ |- .--...|..+ |.+.|+.-+.+
T Consensus 679 ~~~mq---pP-----i~~ilP~lt--PILrnkh~K-v~~nti~lvg~I~~~~-pe-yi~~rEWMRIcfeLvd~Lks~nKe 745 (975)
T COG5181 679 FRSMQ---PP-----ISGILPSLT--PILRNKHQK-VVANTIALVGTICMNS-PE-YIGVREWMRICFELVDSLKSWNKE 745 (975)
T ss_pred ccccC---Cc-----hhhcccccc--HhhhhhhHH-HhhhHHHHHHHHHhcC-cc-cCCHHHHHHHHHHHHHHHHHhhHH
Confidence 11111 11 223333322 111221112 2233455666665432 11 0123567665 55677888999
Q ss_pred HHHHHHHHHHHHHHHhhhccCcchhhhhHHHHHHHhCCCChhhhhhHHHHhhccchHhhhhhHHHHHHHHhhhccccCCC
Q 001381 733 IQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLTDPNPAIRRGSALALGVLPYELLANSWRDVLLKLCSCCLIEENP 812 (1089)
Q Consensus 733 V~~aAa~Al~~l~~~y~~~~~~~~~~~~v~~~~~~L~s~~~~~r~G~a~aLG~lp~~~~~~~~~~i~~~L~~~~~~~~~~ 812 (1089)
+|.+|.+.+..+.+..-. .+++..+++.|+......|-|.+.|+|.....- . ...++..|...-
T Consensus 746 iRR~A~~tfG~Is~aiGP-------qdvL~~LlnnLkvqeRq~RvctsvaI~iVae~c--g-pfsVlP~lm~dY------ 809 (975)
T COG5181 746 IRRNATETFGCISRAIGP-------QDVLDILLNNLKVQERQQRVCTSVAISIVAEYC--G-PFSVLPTLMSDY------ 809 (975)
T ss_pred HHHhhhhhhhhHHhhcCH-------HHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhc--C-chhhHHHHHhcc------
Confidence 999999999988775421 678889999998776667778888877663221 0 012344454331
Q ss_pred CCCCHHHHHHHHHHHHHHHhhhccccccccccCCcchhhhhhhhHHHHHHHHHHhcccCCCCCCCCcchHHHHHHHHHHH
Q 001381 813 EDRDTEARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLE 892 (1089)
Q Consensus 813 ~~~d~e~R~~al~sL~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~L~DYT~D~RGDVGSwVR~aa~~~l~ 892 (1089)
+...+..-...++|+.-+++.+|.. ..+++-.|.+.|-.+|.|- - --=|.-||..|.
T Consensus 810 ~TPe~nVQnGvLkam~fmFeyig~~---------------s~dYvy~itPlleDAltDr-----D---~vhRqta~nvI~ 866 (975)
T COG5181 810 ETPEANVQNGVLKAMCFMFEYIGQA---------------SLDYVYSITPLLEDALTDR-----D---PVHRQTAMNVIR 866 (975)
T ss_pred cCchhHHHHhHHHHHHHHHHHHHHH---------------HHHHHHHhhHHHHhhhccc-----c---hHHHHHHHHHHH
Confidence 1223455667888999998888743 2366667777788888663 1 225888898887
Q ss_pred HHH
Q 001381 893 ICT 895 (1089)
Q Consensus 893 ~l~ 895 (1089)
.+.
T Consensus 867 Hl~ 869 (975)
T COG5181 867 HLV 869 (975)
T ss_pred HHh
Confidence 763
No 31
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=97.39 E-value=0.028 Score=68.66 Aligned_cols=267 Identities=19% Similarity=0.152 Sum_probs=150.2
Q ss_pred CccCCCCHHHHHHHHHHHHHHHccCchhh----HHHHHHHhccccCCCChhhHHHHHHHHHHHHHHHhcccccCChhHHH
Q 001381 594 NKICHWDKVLRELAAEALSALVKYDPEYF----ANFILEKLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPADKQK 669 (1089)
Q Consensus 594 ~~l~h~D~~iR~laa~aL~~L~~~~~~~~----~~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~l~~~~~~~~~~~~~ 669 (1089)
.+|.|.++.+|+++.++++++........ -..++|.++.++..+|..+.--++-++..+...-.....-.+++...
T Consensus 84 ~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~ 163 (503)
T PF10508_consen 84 RGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLS 163 (503)
T ss_pred HHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHH
Confidence 47889999999999999999986553311 14578888889998888877766666666553110000000111111
Q ss_pred HHHhhhHHHHhhhhccCcchHHHHHHHHHHHHHhhhcCCCCchhhH--HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Q 001381 670 IVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLPEKTK--RSLLDTLNENLRHPNSQIQNAAVKALKPFVQT 747 (1089)
Q Consensus 670 ~i~~i~~~~~~~~l~r~~~gelir~a~~~lI~~ls~~~lp~~~~~~--~~~~~~L~~~L~~~~~~V~~aAa~Al~~l~~~ 747 (1089)
. +..+. ....+.+|--++.++..++..+ |-..+.. ..+++.+...|..++.-+|..|.+.+..+...
T Consensus 164 ~----L~~l~------~~~~~~vR~Rv~el~v~i~~~S-~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~ 232 (503)
T PF10508_consen 164 K----LKSLM------SQSSDIVRCRVYELLVEIASHS-PEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAET 232 (503)
T ss_pred H----HHHHH------hccCHHHHHHHHHHHHHHHhcC-HHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcC
Confidence 1 11111 1124567777777777766422 1111111 12566677778888888999999999888652
Q ss_pred hhhccCcchhhhhHHHHHHHhCCCChhhhhhHHHHhhc------cchH---hhhhhHHHHHHHHhhhccccCCCCCCCHH
Q 001381 748 YMVAADSGVVGGISLKYMEQLTDPNPAIRRGSALALGV------LPYE---LLANSWRDVLLKLCSCCLIEENPEDRDTE 818 (1089)
Q Consensus 748 y~~~~~~~~~~~~v~~~~~~L~s~~~~~r~G~a~aLG~------lp~~---~~~~~~~~i~~~L~~~~~~~~~~~~~d~e 818 (1089)
. ....--....+++++.+.+.+.....+-+..+..|. +... -....+..++..|.... +..|..
T Consensus 233 ~-~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~------~s~d~~ 305 (503)
T PF10508_consen 233 P-HGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSML------ESQDPT 305 (503)
T ss_pred h-hHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHh------CCCChh
Confidence 1 000000115678888888752221113333333333 2111 01122334444454432 456889
Q ss_pred HHHHHHHHHHHHHhhhccccccccccCCcchhhhhhhhHHHHHHHHHHhcccCCCCCCCCcchHHHHHHHHHHHHHH
Q 001381 819 ARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEICT 895 (1089)
Q Consensus 819 ~R~~al~sL~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~L~DYT~D~RGDVGSwVR~aa~~~l~~l~ 895 (1089)
.|-.|+.+++.++.+.- +...+ ......-+...++...++....+.| +|..++.++..++
T Consensus 306 ~~~~A~dtlg~igst~~------------G~~~L-~~~~~~~~~~~l~~~~~~~~~~~~~----lk~r~l~al~~il 365 (503)
T PF10508_consen 306 IREVAFDTLGQIGSTVE------------GKQLL-LQKQGPAMKHVLKAIGDAIKSGSTE----LKLRALHALASIL 365 (503)
T ss_pred HHHHHHHHHHHHhCCHH------------HHHHH-HhhcchHHHHHHHHHHHHhcCCchH----HHHHHHHHHHHHH
Confidence 99999999998875421 11111 1112334556666667776664444 5888999998774
No 32
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=97.32 E-value=0.1 Score=65.93 Aligned_cols=412 Identities=18% Similarity=0.147 Sum_probs=225.0
Q ss_pred HHHHHHHHHH-hhcCCCChhHHHHHHHHHHHHHhhhCcch-hhhHHHHHHhhcCCCCCCcchHHHHHHHHHHHhcCCCCC
Q 001381 381 ILEEIIEILL-SGLRDTDTVVRWSAAKGIGRITSCLTSSL-SEEVFSSVLELFSPGEGDGSWHGGCLALAELARRGLLLP 458 (1089)
Q Consensus 381 ~vE~iI~~ll-~~L~d~dt~vR~saAK~l~rI~~~L~~~~-a~~vi~~il~~l~~~~~~~~wHg~~LaLael~~~~ll~p 458 (1089)
.|+.-+-... +--.|....||-++|+.+|.++.-++.+. .+.+++...++..+..
T Consensus 233 ~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~Ddq----------------------- 289 (759)
T KOG0211|consen 233 AVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQ----------------------- 289 (759)
T ss_pred HHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcch-----------------------
Confidence 3444444444 44569999999999999999999998743 2333333333332221
Q ss_pred CcccchHHHHHHhhhhhccccccCCChhhhhhhhHHHHHhhhccCccchhHHHHHHHHHHHHHHhcCCCchhhHHHHHHH
Q 001381 459 SSLPKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAAAAAF 538 (1089)
Q Consensus 459 ~~l~~il~~i~~~L~f~~r~~~~svG~~VRDAacfi~WslaR~~~~~~l~~~~~~l~~~Ll~~alfD~e~~iRRaAsAAl 538 (1089)
.+||-+|-=.+=++.-.++.+. +..+ -+.+.+....=|.++.+|......+
T Consensus 290 --------------------------dsVr~~a~~~~~~l~~l~~~~~--d~~~-~~~~~l~~~~~d~~~~v~~~~~~~~ 340 (759)
T KOG0211|consen 290 --------------------------DSVREAAVESLVSLLDLLDDDD--DVVK-SLTESLVQAVEDGSWRVSYMVADKF 340 (759)
T ss_pred --------------------------hhHHHHHHHHHHHHHHhcCCch--hhhh-hhhHHHHHHhcChhHHHHHHHhhhh
Confidence 3344444444444544444432 2222 2233345777777777777776665
Q ss_pred HH---HhcccCCCC--CCccceecccccchhhhHHHHHHHHHHHHhhh------cchHHHHHHHHh---CccCCCCHHHH
Q 001381 539 QE---NVGRQGNYP--HGIDIVNTADYFSLSSRVYSYLHVAVFIAQYE------GYLYPFVDELLY---NKICHWDKVLR 604 (1089)
Q Consensus 539 QE---~vGR~g~~p--~GI~il~~~d~~~v~~r~~a~~~va~~va~~~------~Y~~~li~~Ll~---~~l~h~D~~iR 604 (1089)
-| .+|..++-+ ++......-|-+ ..++.+ ++..+..+. .|..-..++++- ..+.+.+..+|
T Consensus 341 ~~L~~~~~~~~~~~~~~~~~~~l~~~~~--~e~r~a---~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr 415 (759)
T KOG0211|consen 341 SELSSAVGPSATRTQLVPPVSNLLKDEE--WEVRYA---IAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVR 415 (759)
T ss_pred hhHHHHhccccCcccchhhHHHHhcchh--hhhhHH---hhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHH
Confidence 44 444432211 111111111111 112211 122222222 222223333321 24558888899
Q ss_pred HHHHHHHHHHHccCc-hhhHHHHHHHhccccCCCChhhHHHHHHHHHHHHHHHhcccccCChhHHHHHHhhhHHHHhhhh
Q 001381 605 ELAAEALSALVKYDP-EYFANFILEKLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPADKQKIVAGIVPGIEKARL 683 (1089)
Q Consensus 605 ~laa~aL~~L~~~~~-~~~~~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~l~~~~~~~~~~~~~~i~~i~~~~~~~~l 683 (1089)
...|.-...+.+..| +..++..+|-++..+.+.+..+|+..+-.+.+.. ...+.... ....+.....+..+.....
T Consensus 416 ~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~-~v~~v~g~--~~~s~slLp~i~el~~d~~ 492 (759)
T KOG0211|consen 416 SALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLE-EVNDVIGI--STVSNSLLPAIVELAEDLL 492 (759)
T ss_pred HHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHH-hccCcccc--hhhhhhhhhhhhhhccchh
Confidence 888877776665554 2334556677777788888888886654443322 22111100 1111111111122211112
Q ss_pred ccCcchHHHHHHHHHHHHHhhhcC-CCCchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCcchhhhhHH
Q 001381 684 YRGKGGEIMRSAVSRFIECISLSF-VSLPEKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISL 762 (1089)
Q Consensus 684 ~r~~~gelir~a~~~lI~~ls~~~-lp~~~~~~~~~~~~L~~~L~~~~~~V~~aAa~Al~~l~~~y~~~~~~~~~~~~v~ 762 (1089)
.-+|.|+...|-.++... .++ +-+.+..++..++.+....|+++|+..+..+...+- ..-....+++
T Consensus 493 ------wRvr~ail~~ip~la~q~~~~~---~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G---~~w~~~~~i~ 560 (759)
T KOG0211|consen 493 ------WRVRLAILEYIPQLALQLGVEF---FDEKLAELLRTWLPDHVYSIREAAARNLPALVETFG---SEWARLEEIP 560 (759)
T ss_pred ------HHHHHHHHHHHHHHHHhhhhHH---hhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhC---cchhHHHhhH
Confidence 247888888887666421 111 224466677777888889999999999999988763 1234578888
Q ss_pred HHHHHhCCCChhhhhhHHHHhhccchHhhhhhH-HHHHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHhhhccccccc
Q 001381 763 KYMEQLTDPNPAIRRGSALALGVLPYELLANSW-RDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQSQENS 841 (1089)
Q Consensus 763 ~~~~~L~s~~~~~r~G~a~aLG~lp~~~~~~~~-~~i~~~L~~~~~~~~~~~~~d~e~R~~al~sL~~i~~~~g~~~~~~ 841 (1089)
+++....+++...|+..+.++..+-..+-++.. ..++..+.... .+..++.|-++++.|..+...+-.
T Consensus 561 k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~------~D~vanVR~nvak~L~~i~~~L~~----- 629 (759)
T KOG0211|consen 561 KLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLV------KDPVANVRINVAKHLPKILKLLDE----- 629 (759)
T ss_pred HHHHHhcCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhc------cCCchhhhhhHHHHHHHHHhhcch-----
Confidence 999888766788888888887655433322211 22333333332 456789999999999998754421
Q ss_pred cccCCcchhhhhhhhHHHHHHHHHHhcccCCCCCCCCcchHHHHHHHHHHHHHH
Q 001381 842 LIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEICT 895 (1089)
Q Consensus 842 ~~~~~~~~~~~~~~~~~~i~~~Ll~~L~DYT~D~RGDVGSwVR~aa~~~l~~l~ 895 (1089)
...+..+.-++.+| .+|+-+| ||..|..+.+.+-
T Consensus 630 -------------~~~~~~v~pll~~L---~~d~~~d----vr~~a~~a~~~i~ 663 (759)
T KOG0211|consen 630 -------------SVRDEEVLPLLETL---SSDQELD----VRYRAILAFGSIE 663 (759)
T ss_pred -------------HHHHHHHHHHHHHh---ccCcccc----hhHHHHHHHHHHH
Confidence 12222222222222 3367777 5999999998764
No 33
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.23 E-value=0.063 Score=64.00 Aligned_cols=249 Identities=19% Similarity=0.229 Sum_probs=162.4
Q ss_pred HHhhcCCCChhHHHHHHHHHHHHHhhhCcchh----hhHHHHHHhhcCCCCCCcchHHHHHHHHHHHhc-CCCCCCcccc
Q 001381 389 LLSGLRDTDTVVRWSAAKGIGRITSCLTSSLS----EEVFSSVLELFSPGEGDGSWHGGCLALAELARR-GLLLPSSLPK 463 (1089)
Q Consensus 389 ll~~L~d~dt~vR~saAK~l~rI~~~L~~~~a----~~vi~~il~~l~~~~~~~~wHg~~LaLael~~~-~ll~p~~l~~ 463 (1089)
+..+|.|+--.=|=+||--+.++++-+-..-. +.+|+.+..-+-...+.+..-|++.++|-.+-- |.=-..++..
T Consensus 5 i~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~ 84 (675)
T KOG0212|consen 5 IARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEK 84 (675)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHH
Confidence 34678889899999999999999998754433 334444444332211222233888888876332 2211126788
Q ss_pred hHHHHHHhhhhhccccccCCChhhhhhhhHHHHHhhhccCccchhHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHhc
Q 001381 464 VVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAAAAAFQENVG 543 (1089)
Q Consensus 464 il~~i~~~L~f~~r~~~~svG~~VRDAacfi~WslaR~~~~~~l~~~~~~l~~~Ll~~alfD~e~~iRRaAsAAlQE~vG 543 (1089)
++|.++.++..+. .+||--||=-..-+|+-...+.+ .|.+.|+.. ++...-|.|.+||-+| |++.
T Consensus 85 iv~Pv~~cf~D~d--------~~vRyyACEsLYNiaKv~k~~v~-~~Fn~iFdv-L~klsaDsd~~V~~~a-----eLLd 149 (675)
T KOG0212|consen 85 IVPPVLNCFSDQD--------SQVRYYACESLYNIAKVAKGEVL-VYFNEIFDV-LCKLSADSDQNVRGGA-----ELLD 149 (675)
T ss_pred hhHHHHHhccCcc--------ceeeeHhHHHHHHHHHHhccCcc-cchHHHHHH-HHHHhcCCccccccHH-----HHHH
Confidence 8888887776655 77999999999999999887544 577777766 5788899999999875 4455
Q ss_pred cc-C--------CCC--CCccceecccccchhhhHHHHHHHHHHH-H-----hhhcchHHHHHHHHhCccCCCCHHHHHH
Q 001381 544 RQ-G--------NYP--HGIDIVNTADYFSLSSRVYSYLHVAVFI-A-----QYEGYLYPFVDELLYNKICHWDKVLREL 606 (1089)
Q Consensus 544 R~-g--------~~p--~GI~il~~~d~~~v~~r~~a~~~va~~v-a-----~~~~Y~~~li~~Ll~~~l~h~D~~iR~l 606 (1089)
|. - +|. .=|.+++ ...|..+.-.+-|+.=+..+ - ++-.|.+.+++.|++ .+++...++|.+
T Consensus 150 RLikdIVte~~~tFsL~~~ipLL~-eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~-~LsD~s~eVr~~ 227 (675)
T KOG0212|consen 150 RLIKDIVTESASTFSLPEFIPLLR-ERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFN-MLSDSSDEVRTL 227 (675)
T ss_pred HHHHHhccccccccCHHHHHHHHH-HHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHH-HhcCCcHHHHHH
Confidence 54 1 210 0011111 11222222222233222222 1 223799999999997 799999999999
Q ss_pred HHHHHHHHHc---cCchhh-HHHHHHHhccccCCCChhhHHHHHHHHHHHHH
Q 001381 607 AAEALSALVK---YDPEYF-ANFILEKLTPFTLSTDLCTRHGATLAAGEVVL 654 (1089)
Q Consensus 607 aa~aL~~L~~---~~~~~~-~~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~ 654 (1089)
+-.+++++.. ..|+.+ .+.+++.+.+.+.+.+..++--++.-+-|.+.
T Consensus 228 ~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~ 279 (675)
T KOG0212|consen 228 TDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVK 279 (675)
T ss_pred HHHHHHHHHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhc
Confidence 9998888764 345542 34678888899999888888766666666654
No 34
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=97.17 E-value=0.15 Score=62.30 Aligned_cols=312 Identities=13% Similarity=0.127 Sum_probs=174.4
Q ss_pred HHhhcCCCCCCcchHHHHHHHHHHHhcCCCCCCcccchHHHHHHhhhhhccccccCCChhhhhhhhHHHHHhhhccCccc
Q 001381 427 VLELFSPGEGDGSWHGGCLALAELARRGLLLPSSLPKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTD 506 (1089)
Q Consensus 427 il~~l~~~~~~~~wHg~~LaLael~~~~ll~p~~l~~il~~i~~~L~f~~r~~~~svG~~VRDAacfi~WslaR~~~~~~ 506 (1089)
+++.|+....+. .--.|-+|..+.... -+...++.+.+.+..+|.-.. ..||--+|..+--+++.-+. .
T Consensus 43 lf~~L~~~~~e~-v~~~~~iL~~~l~~~-~~~~l~~~~~~~L~~gL~h~~--------~~Vr~l~l~~l~~~~~~~~~-~ 111 (503)
T PF10508_consen 43 LFDCLNTSNREQ-VELICDILKRLLSAL-SPDSLLPQYQPFLQRGLTHPS--------PKVRRLALKQLGRIARHSEG-A 111 (503)
T ss_pred HHHHHhhcChHH-HHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHhcCCC--------HHHHHHHHHHHHHHhcCCHH-H
Confidence 666665442211 222444444444322 223346778888888875433 66887776653333333221 1
Q ss_pred hhHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHhcccCCCCCCccceecccccchhhhHHHHHHHHHHHHhhhcchHH
Q 001381 507 MRNILEQIAPHLLTVACYDREVNCRRAAAAAFQENVGRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYP 586 (1089)
Q Consensus 507 l~~~~~~l~~~Ll~~alfD~e~~iRRaAsAAlQE~vGR~g~~p~GI~il~~~d~~~v~~r~~a~~~va~~va~~~~Y~~~ 586 (1089)
..-..+.=+..+|+..+-|+|..|-++|+.++..+.+.. .|++.+ |-..
T Consensus 112 ~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~----~~~~~l---------------------------~~~~ 160 (503)
T PF10508_consen 112 AQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHP----EGLEQL---------------------------FDSN 160 (503)
T ss_pred HHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCc----hhHHHH---------------------------hCcc
Confidence 222233334556789999999999999999998875432 122111 1111
Q ss_pred HHHHHHhCccCCCCHHHHHHHHHHHHHHHccCchhhH----HHHHHHhccccCCCChhhHHHHHHHHHHHHHHHhccccc
Q 001381 587 FVDELLYNKICHWDKVLRELAAEALSALVKYDPEYFA----NFILEKLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYA 662 (1089)
Q Consensus 587 li~~Ll~~~l~h~D~~iR~laa~aL~~L~~~~~~~~~----~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~l~~~~~~ 662 (1089)
++.+|.. .+.+.|..+|.-.-..+.++++..++.+. .-+++.++..+.++|.-.+-.++-.++++...-+....-
T Consensus 161 ~~~~L~~-l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL 239 (503)
T PF10508_consen 161 LLSKLKS-LMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYL 239 (503)
T ss_pred hHHHHHH-HHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHH
Confidence 2444433 33455777777777788888877765432 137888888899999998888888888876521110000
Q ss_pred CChhHHHHHHhhhHHHHhhhhccCcchHHHHHHHHHHHHHhhhcCCCCc-hhhHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 001381 663 LPADKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLP-EKTKRSLLDTLNENLRHPNSQIQNAAVKAL 741 (1089)
Q Consensus 663 ~~~~~~~~i~~i~~~~~~~~l~r~~~gelir~a~~~lI~~ls~~~lp~~-~~~~~~~~~~L~~~L~~~~~~V~~aAa~Al 741 (1089)
.......++..++....... +.+.++-.+..++.+.++... |.. -...+.+...+...+...+...+..|-+++
T Consensus 240 ~~~gi~~~L~~~l~~~~~dp----~~~~~~l~g~~~f~g~la~~~-~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtl 314 (503)
T PF10508_consen 240 EQQGIFDKLSNLLQDSEEDP----RLSSLLLPGRMKFFGNLARVS-PQEVLELYPAFLERLFSMLESQDPTIREVAFDTL 314 (503)
T ss_pred HhCCHHHHHHHHHhccccCC----cccchhhhhHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Confidence 01123333333333332221 235566677777877777531 211 112345566666777889999999999999
Q ss_pred HHHHHHh-----hhccCcchhhhhHHHHHHHhCCCChhhhhhHHHHhhcc
Q 001381 742 KPFVQTY-----MVAADSGVVGGISLKYMEQLTDPNPAIRRGSALALGVL 786 (1089)
Q Consensus 742 ~~l~~~y-----~~~~~~~~~~~~v~~~~~~L~s~~~~~r~G~a~aLG~l 786 (1089)
..+...- .....+.....+++.+....++.....|...-.+++.+
T Consensus 315 g~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~i 364 (503)
T PF10508_consen 315 GQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASI 364 (503)
T ss_pred HHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 8774321 00001112234455555555555544555556666666
No 35
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.98 E-value=0.45 Score=57.10 Aligned_cols=370 Identities=18% Similarity=0.144 Sum_probs=206.2
Q ss_pred cchHHHHHHHHhCccCCCCHHHHHHHHHHHHHHHccCchh---hHHHHHHHhccccCCCChhhHHHHHHHHHHHHHHHhc
Q 001381 582 GYLYPFVDELLYNKICHWDKVLRELAAEALSALVKYDPEY---FANFILEKLTPFTLSTDLCTRHGATLAAGEVVLALCK 658 (1089)
Q Consensus 582 ~Y~~~li~~Ll~~~l~h~D~~iR~laa~aL~~L~~~~~~~---~~~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~l~~ 658 (1089)
.|.+.++.-.+. .+.+.|..+|--|.++|-++++..... ..+.+...+.....+.|.++|-|+ |+++.+-+
T Consensus 80 ~Y~~~iv~Pv~~-cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~a-----eLLdRLik 153 (675)
T KOG0212|consen 80 GYLEKIVPPVLN-CFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGA-----ELLDRLIK 153 (675)
T ss_pred HHHHHhhHHHHH-hccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHH-----HHHHHHHH
Confidence 388888887775 889999999999999999888754322 223445555555567777888774 44444432
Q ss_pred ccccCChhHHHHHHhhhHHHHhhhhccCcchHHHHHHHHHHHHHhhhcCCCCch--hhHHHHHHHHHHhcCCCcHHHHHH
Q 001381 659 YDYALPADKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLPE--KTKRSLLDTLNENLRHPNSQIQNA 736 (1089)
Q Consensus 659 ~~~~~~~~~~~~i~~i~~~~~~~~l~r~~~gelir~a~~~lI~~ls~~~lp~~~--~~~~~~~~~L~~~L~~~~~~V~~a 736 (1089)
..... ......+..+++-+ +.++|-- +...|..+..+|..+- ..|..+ ..++.+++-+-..|.++.++||..
T Consensus 154 dIVte-~~~tFsL~~~ipLL-~eriy~~--n~~tR~flv~Wl~~Ld--s~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~ 227 (675)
T KOG0212|consen 154 DIVTE-SASTFSLPEFIPLL-RERIYVI--NPMTRQFLVSWLYVLD--SVPDLEMISYLPSLLDGLFNMLSDSSDEVRTL 227 (675)
T ss_pred Hhccc-cccccCHHHHHHHH-HHHHhcC--CchHHHHHHHHHHHHh--cCCcHHHHhcchHHHHHHHHHhcCCcHHHHHH
Confidence 11111 11123344444443 4566643 7789999999998654 223211 133455555666779999999999
Q ss_pred HHHHHHHHHHHhhhccCcchhhhhHHHHHHHhCCCChhhhhhHHHHhhcc---chHhhhhhHHHHHHHHhhhccccCCCC
Q 001381 737 AVKALKPFVQTYMVAADSGVVGGISLKYMEQLTDPNPAIRRGSALALGVL---PYELLANSWRDVLLKLCSCCLIEENPE 813 (1089)
Q Consensus 737 Aa~Al~~l~~~y~~~~~~~~~~~~v~~~~~~L~s~~~~~r~G~a~aLG~l---p~~~~~~~~~~i~~~L~~~~~~~~~~~ 813 (1089)
.-.++..+..+.-++..+-.-++.++-.+..++++++..+.-+..=+-.+ |....-.....|+..+..|+-.++ +
T Consensus 228 ~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e--~ 305 (675)
T KOG0212|consen 228 TDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTE--E 305 (675)
T ss_pred HHHHHHHHHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCc--c
Confidence 99999998887644322213356677777777777777665332221111 111111233455666666642221 1
Q ss_pred CCCHHHHHHHHHHHHHHHhhhccccccccccCCcchhhhhhhhHHHHHHHHHHhcccCCCCCCCCcchHHHHHHHHHHHH
Q 001381 814 DRDTEARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEI 893 (1089)
Q Consensus 814 ~~d~e~R~~al~sL~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~L~DYT~D~RGDVGSwVR~aa~~~l~~ 893 (1089)
+.-.+.-+..-..+-.++.+-.. ..+-.+..+++.|..-+.|-..+ .|.++++=+.-
T Consensus 306 ~~i~~~a~~~n~~l~~l~s~~~~---------------~~~id~~~ii~vl~~~l~~~~~~--------tri~~L~Wi~~ 362 (675)
T KOG0212|consen 306 MSIKEYAQMVNGLLLKLVSSERL---------------KEEIDYGSIIEVLTKYLSDDREE--------TRIAVLNWIIL 362 (675)
T ss_pred ccHHHHHHHHHHHHHHHHhhhhh---------------ccccchHHHHHHHHHHhhcchHH--------HHHHHHHHHHH
Confidence 11111111111123333321100 00112346777777666554333 56666655532
Q ss_pred HHHHhhccCCCCCCCCCccccccCCCCccccccccCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhccCccCC-c
Q 001381 894 CTYILCKRDFVPSPEKPQEVKSELPGNVTAEKTLFDANLATNLVAGIVKQAVEKMDKLREAAAKVLRRILYNKTIFVP-I 972 (1089)
Q Consensus 894 l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~llrq~~EkiD~vR~~A~~~L~~l~~~~~~~~~-~ 972 (1089)
+ ..+ .+.+++ -..+.++.-++++...+-|.|=..+..++..+-.....+ . .
T Consensus 363 l---~~~----------------------~p~ql~--~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~-~~~ 414 (675)
T KOG0212|consen 363 L---YHK----------------------APGQLL--VHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSP-NLR 414 (675)
T ss_pred H---Hhh----------------------Ccchhh--hhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccc-cHH
Confidence 2 221 112222 245678889999999999999999999999886543211 2 4
Q ss_pred cchHHHhhhcCCCcccCcCCCCChhhHHhhhcChhhhHHHHHhhh
Q 001381 973 PHREKLEEIVPNEADLNWGVPAFSYPRFVHLLRFSCYSRVLLSGL 1017 (1089)
Q Consensus 973 ~~~~~L~~~f~~~~~~~w~~~~~~f~~~~~lL~~~~y~~~~l~Gl 1017 (1089)
+..-.|.+.|..+...--..++--..++|-+|+ +++.+..+.++
T Consensus 415 ~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~-aE~IYr~~a~I 458 (675)
T KOG0212|consen 415 KFLLSLLEMFKEDTKLLEVRGNLIIRQLCLLLN-AERIYRSIADI 458 (675)
T ss_pred HHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHhC-HHHHHHHHHHH
Confidence 555567777766542222223333355565555 33333333333
No 36
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.93 E-value=0.7 Score=60.99 Aligned_cols=324 Identities=17% Similarity=0.127 Sum_probs=199.1
Q ss_pred HHHHHHHhcChhhhhhhhHHHHHhhhhhhccCcCCCchhHHHHHHHHHHHhhhcccCCCCcccccccccccccccccccc
Q 001381 267 ALAAIFKAGGRKVLLDVIPVVWNDASTMLKSGSAARSPLLRKYLMKLTQRLGLTCLPRCTSAWRYVIRTSSLGENMSSRA 346 (1089)
Q Consensus 267 ~l~~ilk~~~~~~l~~~~~~i~~~~~~l~~~~~~~~~~l~rKl~~Kl~~rlal~~L~pr~~~wrY~rg~rsL~~nl~~~~ 346 (1089)
+|+.++..-+.+++...++.+|..+-..++.= ---+|+-.-|...-++.++.+..-. .|
T Consensus 1062 AL~dLl~g~~~~~~~e~lpelw~~~fRvmDDI----KEsVR~aa~~~~~~lsKl~vr~~d~------------~~----- 1120 (1702)
T KOG0915|consen 1062 ALADLLQGRPFDQVKEKLPELWEAAFRVMDDI----KESVREAADKAARALSKLCVRICDV------------TN----- 1120 (1702)
T ss_pred HHHHHHcCCChHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhccc------------CC-----
Confidence 67777776677888888888887443332210 1135666666666666555431000 01
Q ss_pred ccccccccCccccccccccccCCCCCCCCCCchHHHHHHHHHHHh-hcCCCChhHHHHHHHHHHHHHhhhCcc---hhhh
Q 001381 347 AFREIDQCDHSVVDSLKSEQNRNCPEDEGMDVPDILEEIIEILLS-GLRDTDTVVRWSAAKGIGRITSCLTSS---LSEE 422 (1089)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~e~vE~iI~~ll~-~L~d~dt~vR~saAK~l~rI~~~L~~~---~a~~ 422 (1089)
..+--+.+..|+++|++ ++.++.+.||--+-+.+-.+++.-|++ +...
T Consensus 1121 ----------------------------~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~ 1172 (1702)
T KOG0915|consen 1121 ----------------------------GAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPK 1172 (1702)
T ss_pred ----------------------------cccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhH
Confidence 11123778899999996 577999999999999999999887765 4678
Q ss_pred HHHHHHhhcCCCCC----------------------------CcchHHHHHHHHHHHhcCCCCCCcccchHHHHHHhhhh
Q 001381 423 VFSSVLELFSPGEG----------------------------DGSWHGGCLALAELARRGLLLPSSLPKVVPVIVKALHY 474 (1089)
Q Consensus 423 vi~~il~~l~~~~~----------------------------~~~wHg~~LaLael~~~~ll~p~~l~~il~~i~~~L~f 474 (1089)
+|+.+++.+++.++ -+.|.++-. +.+. +--+.|.+++|.+.+.+
T Consensus 1173 LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~----ci~~--iD~~vLeelip~l~el~-- 1244 (1702)
T KOG0915|consen 1173 LIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINK----CINY--IDISVLEELIPRLTELV-- 1244 (1702)
T ss_pred HHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHH----HHHh--hhHHHHHHHHHHHHHHH--
Confidence 88988888865431 122222211 1111 11234677888887665
Q ss_pred hccccccCCChhhhhhhhHHHHHhhhccCccchhHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHhccc---------
Q 001381 475 DIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAAAAAFQENVGRQ--------- 545 (1089)
Q Consensus 475 ~~r~~~~svG~~VRDAacfi~WslaR~~~~~~l~~~~~~l~~~Ll~~alfD~e~~iRRaAsAAlQE~vGR~--------- 545 (1089)
| +|||-.-|=++.-++-.++.++. .+++||.-.++..++ ..+-||+.++||+=+-|+.-+++--
T Consensus 1245 ---R--~sVgl~Tkvg~A~fI~~L~~r~~-~emtP~sgKll~al~-~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLi 1317 (1702)
T KOG0915|consen 1245 ---R--GSVGLGTKVGCASFISLLVQRLG-SEMTPYSGKLLRALF-PGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLI 1317 (1702)
T ss_pred ---h--ccCCCCcchhHHHHHHHHHHHhc-cccCcchhHHHHHHh-hccccccHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 3 36777777666555666776666 589999999998875 8999999999999888876544332
Q ss_pred --------CCC--CCCccceecccccchhhhHHHHH-----------------------HHHHHHH---------hhhcc
Q 001381 546 --------GNY--PHGIDIVNTADYFSLSSRVYSYL-----------------------HVAVFIA---------QYEGY 583 (1089)
Q Consensus 546 --------g~~--p~GI~il~~~d~~~v~~r~~a~~-----------------------~va~~va---------~~~~Y 583 (1089)
|.- +|-|..-+..| +++.....+ ++...++ ..+-|
T Consensus 1318 e~~l~~~l~k~es~~siscatis~---Ian~s~e~Lkn~asaILPLiFLa~~ee~Ka~q~Lw~dvW~e~vsggagtvrl~ 1394 (1702)
T KOG0915|consen 1318 ETLLADLLGKDESLKSISCATISN---IANYSQEMLKNYASAILPLIFLAMHEEEKANQELWNDVWAELVSGGAGTVRLY 1394 (1702)
T ss_pred HHHHHHHhccCCCccchhHHHHHH---HHHhhHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCCcchhhhh
Confidence 110 22221111111 111111111 1111111 11237
Q ss_pred hHHHHHHHHhCccCCCCHHHHHHHHHHHHHHHccC----chhhHHHHHHHhccccCCCChhhHHHHHHHHHHHHHHHh
Q 001381 584 LYPFVDELLYNKICHWDKVLRELAAEALSALVKYD----PEYFANFILEKLTPFTLSTDLCTRHGATLAAGEVVLALC 657 (1089)
Q Consensus 584 ~~~li~~Ll~~~l~h~D~~iR~laa~aL~~L~~~~----~~~~~~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~l~ 657 (1089)
...++.++....+.+.-..+|..+|+++..++... |+..+....+.++..+...-|.-+.=.+-++++.+.++.
T Consensus 1395 ~~eiLn~iceni~nn~~w~lr~q~Akai~~~a~~~sss~~~p~ilkl~~~ll~~L~GRiwdGKe~iLKAl~~~~~a~~ 1472 (1702)
T KOG0915|consen 1395 LLEILNLICENITNNESWKLRKQAAKAIRVIAEGLSSSAPIPVILKLALSLLDTLNGRIWDGKEEILKALASAFEAGL 1472 (1702)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHcccccccCChHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHhH
Confidence 77888888875555666899999999999988743 444455566667777776666555555566665555443
No 37
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=96.87 E-value=1.6 Score=55.61 Aligned_cols=489 Identities=19% Similarity=0.161 Sum_probs=245.7
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhCcchhhhHHHHHHhhcCCCCCCc---chHHHHHHHHHHHhcCCCCC
Q 001381 382 LEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSLSEEVFSSVLELFSPGEGDG---SWHGGCLALAELARRGLLLP 458 (1089)
Q Consensus 382 vE~iI~~ll~~L~d~dt~vR~saAK~l~rI~~~L~~~~a~~vi~~il~~l~~~~~~~---~wHg~~LaLael~~~~ll~p 458 (1089)
--..|.++.+.+ +..-.|+-.+|-.+|.+..--+......++...++.+...+... .|-..++..+.. ++.
T Consensus 119 r~~lipf~~e~~-~~~dev~~~~a~~~~~~~~~v~~~~~~~~ll~~le~l~~~eet~vr~k~ve~l~~v~~~-----~~~ 192 (759)
T KOG0211|consen 119 RLELIPFLTEAE-DDEDEVLLDLAEQLGTFLPDVGGPEYAHMLLPPLELLATVEETGVREKAVESLLKVAVG-----LPK 192 (759)
T ss_pred hhhhhhHHHHhc-cchhHHHHHHHHHhcccchhccchhHHHHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHh-----cCh
Confidence 456778888888 88888999999999999887554333344444444443322111 122222332221 122
Q ss_pred Ccc-cchHHHHHHhhhhhccccccCCChhhhhhhhHHHHHhhhccCccchhHHHHHHHHHHHHHHhcCCCchhhHHHHHH
Q 001381 459 SSL-PKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAAAAA 537 (1089)
Q Consensus 459 ~~l-~~il~~i~~~L~f~~r~~~~svG~~VRDAacfi~WslaR~~~~~~l~~~~~~l~~~Ll~~alfD~e~~iRRaAsAA 537 (1089)
+.+ ...+|.+-+.-.+|.+.... -.|=.+++.|.+.. .+.+..=........|-|.+.++||+++.=
T Consensus 193 ~~~~~~lv~l~~~l~~~d~~~sr~-----------sacglf~~~~~~~~-~~~vk~elr~~~~~lc~d~~~~Vr~~~a~~ 260 (759)
T KOG0211|consen 193 EKLREHLVPLLKRLATGDWFQSRL-----------SACGLFGKLYVSLP-DDAVKRELRPIVQSLCQDDTPMVRRAVASN 260 (759)
T ss_pred HHHHHHHHHHHHHccchhhhhcch-----------hhhhhhHHhccCCC-hHHHHHHHHHHHHhhccccchhhHHHHHhh
Confidence 233 33456665554444433211 13445677776522 144555566677788999999999997766
Q ss_pred HHHHhcccCCCCCCccceecccccchhhhHHHHHHHHHHHHhhhcchHHHHHHHHhCccCCCCHHHHHHHHHHHHHHHcc
Q 001381 538 FQENVGRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNKICHWDKVLRELAAEALSALVKY 617 (1089)
Q Consensus 538 lQE~vGR~g~~p~GI~il~~~d~~~v~~r~~a~~~va~~va~~~~Y~~~li~~Ll~~~l~h~D~~iR~laa~aL~~L~~~ 617 (1089)
+.++.--.++ +.-..+..+...+|.. +--..+|.+|..++..+...
T Consensus 261 l~~~a~~~~~------------------------------~~~~s~v~~~~~~L~~----DdqdsVr~~a~~~~~~l~~l 306 (759)
T KOG0211|consen 261 LGNIAKVLES------------------------------EIVKSEVLPTLIQLLR----DDQDSVREAAVESLVSLLDL 306 (759)
T ss_pred hHHHHHHHHH------------------------------HHHHhhccHHHhhhhh----cchhhHHHHHHHHHHHHHHh
Confidence 5332110000 0001112223333332 33356777777777766653
Q ss_pred Cc-h-hhHHHHHHHhccccCCCChhhHHHHHHHHHHHHHHHhcccccC------------ChhH--HHHHHhhhHH---H
Q 001381 618 DP-E-YFANFILEKLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYAL------------PADK--QKIVAGIVPG---I 678 (1089)
Q Consensus 618 ~~-~-~~~~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~l~~~~~~~------------~~~~--~~~i~~i~~~---~ 678 (1089)
.. . .......|.+++...+..+..|--..-...++...+.. .... ++.. -..+...++. +
T Consensus 307 ~~~~~d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~-~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~ 385 (759)
T KOG0211|consen 307 LDDDDDVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP-SATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACY 385 (759)
T ss_pred cCCchhhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc-ccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhh
Confidence 21 1 33445556666655555554444332333333333322 1000 0000 0000000000 0
Q ss_pred Hh---------------hhhccCcchHHHHHHHHHHHHHhhhcCCCCchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 001381 679 EK---------------ARLYRGKGGEIMRSAVSRFIECISLSFVSLPEKTKRSLLDTLNENLRHPNSQIQNAAVKALKP 743 (1089)
Q Consensus 679 ~~---------------~~l~r~~~gelir~a~~~lI~~ls~~~lp~~~~~~~~~~~~L~~~L~~~~~~V~~aAa~Al~~ 743 (1089)
.+ .+.+=-....-+|.+.++.+-.++. -+| .+..+..........+++....|+.....-++.
T Consensus 386 l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p-~~~-k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~ 463 (759)
T KOG0211|consen 386 LNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSP-ILP-KERTISELLPLLIGNLKDEDPIVRLNLIDKLSL 463 (759)
T ss_pred cCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCc-cCC-cCcCccccChhhhhhcchhhHHHHHhhHHHHHH
Confidence 00 0001112244566666666644331 112 122344555556667788888888776654432
Q ss_pred HHHHhhhccCcchhhhhHHHHHHHhC----CCChhhhhhHHHHhhccchHhhh---hhHHHHHHHHhhhccccCCCCCCC
Q 001381 744 FVQTYMVAADSGVVGGISLKYMEQLT----DPNPAIRRGSALALGVLPYELLA---NSWRDVLLKLCSCCLIEENPEDRD 816 (1089)
Q Consensus 744 l~~~y~~~~~~~~~~~~v~~~~~~L~----s~~~~~r~G~a~aLG~lp~~~~~---~~~~~i~~~L~~~~~~~~~~~~~d 816 (1089)
+... .+..+++.+.+..+..+. +.+-..|. ..+=.+|--..+ ..+.+.+..|+..- . .+..
T Consensus 464 ~~~v----~~v~g~~~~s~slLp~i~el~~d~~wRvr~---ail~~ip~la~q~~~~~~~~~~~~l~~~~----l-~d~v 531 (759)
T KOG0211|consen 464 LEEV----NDVIGISTVSNSLLPAIVELAEDLLWRVRL---AILEYIPQLALQLGVEFFDEKLAELLRTW----L-PDHV 531 (759)
T ss_pred HHhc----cCcccchhhhhhhhhhhhhhccchhHHHHH---HHHHHHHHHHHhhhhHHhhHHHHHHHHhh----h-hhhH
Confidence 2221 112223333333433332 22122222 111122221111 12223333343332 1 5567
Q ss_pred HHHHHHHHHHHHHHHhhhccccccccccCCcchhhhhhhhHHHHHHHHHHh-cccCCCCCCCCcchHHHHHHHHHHHHHH
Q 001381 817 TEARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKA-LDDYSVDNRGDVGSWVREAAVDGLEICT 895 (1089)
Q Consensus 817 ~e~R~~al~sL~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~-L~DYT~D~RGDVGSwVR~aa~~~l~~l~ 895 (1089)
.+.|..|...+..++.+.|.. . .. ..++.-++.. ++| +-|+|...+.++..+.
T Consensus 532 ~~Ir~~aa~~l~~l~~~~G~~--------------w--~~-~~~i~k~L~~~~q~---------~y~~R~t~l~si~~la 585 (759)
T KOG0211|consen 532 YSIREAAARNLPALVETFGSE--------------W--AR-LEEIPKLLAMDLQD---------NYLVRMTTLFSIHELA 585 (759)
T ss_pred HHHHHHHHHHhHHHHHHhCcc--------------h--hH-HHhhHHHHHHhcCc---------ccchhhHHHHHHHHHH
Confidence 899999999999999998831 1 11 2334444433 444 6699999999998665
Q ss_pred HHhhccCCCCCCCCCccccccCCCCccccccccCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhccCccCCccch
Q 001381 896 YILCKRDFVPSPEKPQEVKSELPGNVTAEKTLFDANLATNLVAGIVKQAVEKMDKLREAAAKVLRRILYNKTIFVPIPHR 975 (1089)
Q Consensus 896 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~llrq~~EkiD~vR~~A~~~L~~l~~~~~~~~~~~~~ 975 (1089)
.++. ++-..+.++-=+.+......-.||..+.+.|.++...-.++..-..-
T Consensus 586 ~v~g-----------------------------~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~~~v 636 (759)
T KOG0211|consen 586 EVLG-----------------------------QEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRDEEV 636 (759)
T ss_pred HHhc-----------------------------cHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHHHHH
Confidence 4443 24455666777888889999999999999999987653211101111
Q ss_pred HHHhhhcCCCcccCcCC
Q 001381 976 EKLEEIVPNEADLNWGV 992 (1089)
Q Consensus 976 ~~L~~~f~~~~~~~w~~ 992 (1089)
-.+.+.+.++.+.+|..
T Consensus 637 ~pll~~L~~d~~~dvr~ 653 (759)
T KOG0211|consen 637 LPLLETLSSDQELDVRY 653 (759)
T ss_pred HHHHHHhccCcccchhH
Confidence 23555666677778853
No 38
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=96.80 E-value=0.17 Score=61.76 Aligned_cols=237 Identities=14% Similarity=0.173 Sum_probs=118.0
Q ss_pred HHHHHhhhcchHHHHHHHHhCccCCCCHHHHHHHHHHHHHHHccCchhhHHHHHHHhccccCCCChhhHHHHHHHHHHHH
Q 001381 574 AVFIAQYEGYLYPFVDELLYNKICHWDKVLRELAAEALSALVKYDPEYFANFILEKLTPFTLSTDLCTRHGATLAAGEVV 653 (1089)
Q Consensus 574 a~~va~~~~Y~~~li~~Ll~~~l~h~D~~iR~laa~aL~~L~~~~~~~~~~~vlp~Ll~~l~~~d~~~RHG~lLalaevl 653 (1089)
..+...||...+.-|+.+++ ...+.|..||.-|.+.|-.+|+..|+++.. +...|.+.+.++|...+.-+--+|.+++
T Consensus 47 ~kffk~FP~l~~~Ai~a~~D-LcEDed~~iR~~aik~lp~~ck~~~~~v~k-vaDvL~QlL~tdd~~E~~~v~~sL~~ll 124 (556)
T PF05918_consen 47 PKFFKHFPDLQEEAINAQLD-LCEDEDVQIRKQAIKGLPQLCKDNPEHVSK-VADVLVQLLQTDDPVELDAVKNSLMSLL 124 (556)
T ss_dssp HHHHCC-GGGHHHHHHHHHH-HHT-SSHHHHHHHHHHGGGG--T--T-HHH-HHHHHHHHTT---HHHHHHHHHHHHHHH
T ss_pred HHHHhhChhhHHHHHHHHHH-HHhcccHHHHHHHHHhHHHHHHhHHHHHhH-HHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 33444668888899999997 677999999999999999999998886653 5556666667777655554445555555
Q ss_pred HHHhcccccCChhHHHHHHhhhHHHHhhhhccCcchHHHHHHHHHHHHH-hhh---cCCCCchhhHHHHHHHHHHhcCCC
Q 001381 654 LALCKYDYALPADKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIEC-ISL---SFVSLPEKTKRSLLDTLNENLRHP 729 (1089)
Q Consensus 654 ~~l~~~~~~~~~~~~~~i~~i~~~~~~~~l~r~~~gelir~a~~~lI~~-ls~---~~lp~~~~~~~~~~~~L~~~L~~~ 729 (1089)
.. +....+..++.++... ..+.|.+|+-+..+|.. +-. .-++...++...+...+...|.+-
T Consensus 125 ~~----------d~k~tL~~lf~~i~~~----~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL~DV 190 (556)
T PF05918_consen 125 KQ----------DPKGTLTGLFSQIESS----KSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVLQDV 190 (556)
T ss_dssp HH-----------HHHHHHHHHHHHH-------HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHCTT-
T ss_pred hc----------CcHHHHHHHHHHHHhc----ccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHHHhc
Confidence 32 1112344455555411 12467889988888853 221 111112345555555566665442
Q ss_pred cHHHHHHHHHHHHHHHHHhhh------ccCcchhhhhHHHHHHHhC--C----C-ChhhhhhHHHHhhccchHhhhhhHH
Q 001381 730 NSQIQNAAVKALKPFVQTYMV------AADSGVVGGISLKYMEQLT--D----P-NPAIRRGSALALGVLPYELLANSWR 796 (1089)
Q Consensus 730 ~~~V~~aAa~Al~~l~~~y~~------~~~~~~~~~~v~~~~~~L~--s----~-~~~~r~G~a~aLG~lp~~~~~~~~~ 796 (1089)
. ++-+.-++...-+ ..+.....++++-..++.. . . .....+=..-..-++|.+.....-.
T Consensus 191 T-------aeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~fs~~v~Ss 263 (556)
T PF05918_consen 191 T-------AEEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQALPFFSRGVSSS 263 (556)
T ss_dssp --------HHHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG-BTTB--H
T ss_pred c-------HHHHHHHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHHhcCCCChH
Confidence 2 1223333322111 1112223555555554432 1 1 1122221111222345544333445
Q ss_pred HHHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHhhhc
Q 001381 797 DVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLT 835 (1089)
Q Consensus 797 ~i~~~L~~~~~~~~~~~~~d~e~R~~al~sL~~i~~~~g 835 (1089)
+++..++..+.+. ..+...+.|...++.+++++...|
T Consensus 264 kfv~y~~~kvlP~--l~~l~e~~kl~lLk~lAE~s~~~~ 300 (556)
T PF05918_consen 264 KFVNYMCEKVLPK--LSDLPEDRKLDLLKLLAELSPFCG 300 (556)
T ss_dssp HHHHHHHHHTCCC--TT-----HHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHhcCC--hhhCChHHHHHHHHHHHHHcCCCC
Confidence 6667777766543 345677889999999999987655
No 39
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.76 E-value=1.7 Score=54.42 Aligned_cols=386 Identities=16% Similarity=0.153 Sum_probs=199.4
Q ss_pred hHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhCcchhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHHhcCCCCC
Q 001381 379 PDILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSLSEEVFSSVLELFSPGEGDGSWHGGCLALAELARRGLLLP 458 (1089)
Q Consensus 379 ~e~vE~iI~~ll~~L~d~dt~vR~saAK~l~rI~~~L~~~~a~~vi~~il~~l~~~~~~~~wHg~~LaLael~~~~ll~p 458 (1089)
||..-++.+..-+-|+++++.||=.|+-+.-|+..+-| +..+-.++.-...|.+. +.+..+|+.-.+-|+|.++.=.-
T Consensus 137 ~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P-~l~e~f~~~~~~lL~ek-~hGVL~~~l~l~~e~c~~~~~~l 214 (866)
T KOG1062|consen 137 PEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVP-DLVEHFVIAFRKLLCEK-HHGVLIAGLHLITELCKISPDAL 214 (866)
T ss_pred HHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCc-hHHHHhhHHHHHHHhhc-CCceeeeHHHHHHHHHhcCHHHH
Confidence 46677777777777888999999999999999999876 44455555555666443 23445555566678888763111
Q ss_pred CcccchHHHHHHhhhhhccccccCCChhhhhhhhHHHHHhhhccCccchhHHHHHHHHHHHHHHhcCCCchhhHHHHHHH
Q 001381 459 SSLPKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAAAAAF 538 (1089)
Q Consensus 459 ~~l~~il~~i~~~L~f~~r~~~~svG~~VRDAacfi~WslaR~~~~~~l~~~~~~l~~~Ll~~alfD~e~~iRRaAsAAl 538 (1089)
++..+++|-+.+-|.-=. .+..+.+..| ...-.|++|.-+..++ .-+.-.+.+ |+.++
T Consensus 215 ~~fr~l~~~lV~iLk~l~-~~~yspeydv----------------~gi~dPFLQi~iLrlL-riLGq~d~d----aSd~M 272 (866)
T KOG1062|consen 215 SYFRDLVPSLVKILKQLT-NSGYSPEYDV----------------HGISDPFLQIRILRLL-RILGQNDAD----ASDLM 272 (866)
T ss_pred HHHHHHHHHHHHHHHHHh-cCCCCCccCc----------------cCCCchHHHHHHHHHH-HHhcCCCcc----HHHHH
Confidence 234445555444331111 1111222111 0134567765555443 222222222 23333
Q ss_pred HHHhcccCCC-----CCCccc-----eecccccchhhhHHHHHHHHHHHHhhhcchHHHHHHHHhCccCCCCHHHHHHHH
Q 001381 539 QENVGRQGNY-----PHGIDI-----VNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNKICHWDKVLRELAA 608 (1089)
Q Consensus 539 QE~vGR~g~~-----p~GI~i-----l~~~d~~~v~~r~~a~~~va~~va~~~~Y~~~li~~Ll~~~l~h~D~~iR~laa 608 (1089)
-.++++.-+- =-|-.| .++.|..+- +.-+.--++-| .+.+.+.|..+|..|-
T Consensus 273 ~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~-----------------~~LrvlainiL-gkFL~n~d~NirYvaL 334 (866)
T KOG1062|consen 273 NDILAQVATNTDSSKNAGNAILYECVRTIMDIRSN-----------------SGLRVLAINIL-GKFLLNRDNNIRYVAL 334 (866)
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHhccCC-----------------chHHHHHHHHH-HHHhcCCccceeeeeh
Confidence 3333332100 001001 111111111 11222223322 3456678888888888
Q ss_pred HHHHHHHccCchhhHHHHHHHhccccCCCChhhHHHHHHHHHHHHHHHhcccccCChhHHHHHHhhhHHHHh-hhhccCc
Q 001381 609 EALSALVKYDPEYFANFILEKLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPADKQKIVAGIVPGIEK-ARLYRGK 687 (1089)
Q Consensus 609 ~aL~~L~~~~~~~~~~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~l~~~~~~~~~~~~~~i~~i~~~~~~-~~l~r~~ 687 (1089)
.+|.++++.+|.-... --..+++++.+.|..+|--++--+-.++.. .++..-++.++..+.+ ...||+
T Consensus 335 n~L~r~V~~d~~avqr-Hr~tIleCL~DpD~SIkrralELs~~lvn~---------~Nv~~mv~eLl~fL~~~d~~~k~- 403 (866)
T KOG1062|consen 335 NMLLRVVQQDPTAVQR-HRSTILECLKDPDVSIKRRALELSYALVNE---------SNVRVMVKELLEFLESSDEDFKA- 403 (866)
T ss_pred hhHHhhhcCCcHHHHH-HHHHHHHHhcCCcHHHHHHHHHHHHHHhcc---------ccHHHHHHHHHHHHHhccHHHHH-
Confidence 8888888888764443 345677899999988888766544444431 2222222333333332 122332
Q ss_pred chHHHHHHHHHHHHHhhhcCCCCchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCcchhhhhHHHHHHH
Q 001381 688 GGEIMRSAVSRFIECISLSFVSLPEKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQ 767 (1089)
Q Consensus 688 ~gelir~a~~~lI~~ls~~~lp~~~~~~~~~~~~L~~~L~~~~~~V~~aAa~Al~~l~~~y~~~~~~~~~~~~v~~~~~~ 767 (1089)
.+...+|.+.+..+ |-....++..++++ ++.-.-|+..+...+-.++..-+.. ..+..+.++...
T Consensus 404 ---~~as~I~~laEkfa----P~k~W~idtml~Vl----~~aG~~V~~dv~~nll~LIa~~~~e----~~~y~~~rLy~a 468 (866)
T KOG1062|consen 404 ---DIASKIAELAEKFA----PDKRWHIDTMLKVL----KTAGDFVNDDVVNNLLRLIANAFQE----LHEYAVLRLYLA 468 (866)
T ss_pred ---HHHHHHHHHHHhcC----CcchhHHHHHHHHH----HhcccccchhhHHHHHHHHhcCCcc----hhhHHHHHHHHH
Confidence 34455666666555 43344555555554 4445556666666665555432221 112222222222
Q ss_pred h-C-----CCChhhhhhHHHHhhccchHhhhh---------hHHHHHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHh
Q 001381 768 L-T-----DPNPAIRRGSALALGVLPYELLAN---------SWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCE 832 (1089)
Q Consensus 768 L-~-----s~~~~~r~G~a~aLG~lp~~~~~~---------~~~~i~~~L~~~~~~~~~~~~~d~e~R~~al~sL~~i~~ 832 (1089)
+ . -.++..-+-++-++|-....++.+ ....+++.|.+...- ...+..+|..|+.|+.++..
T Consensus 469 ~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~----~~s~~~tk~yal~Al~KLSs 544 (866)
T KOG1062|consen 469 LSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMS----HSSDSTTKGYALTALLKLSS 544 (866)
T ss_pred HhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHh----ccchHHHHHHHHHHHHHHHh
Confidence 2 1 123333556666777665333321 123555555554321 23468999999999999877
Q ss_pred hhcc
Q 001381 833 TLTQ 836 (1089)
Q Consensus 833 ~~g~ 836 (1089)
+.+.
T Consensus 545 r~~s 548 (866)
T KOG1062|consen 545 RFHS 548 (866)
T ss_pred hccc
Confidence 6653
No 40
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.58 E-value=0.15 Score=61.46 Aligned_cols=224 Identities=16% Similarity=0.176 Sum_probs=134.2
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHHHhhhCcchhh-----hHHHHHHhhcCCCCCCcchHHHHHHHHHHHhcCCCCCC-
Q 001381 386 IEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSLSE-----EVFSSVLELFSPGEGDGSWHGGCLALAELARRGLLLPS- 459 (1089)
Q Consensus 386 I~~ll~~L~d~dt~vR~saAK~l~rI~~~L~~~~a~-----~vi~~il~~l~~~~~~~~wHg~~LaLael~~~~ll~p~- 459 (1089)
+..|..-+.+++-.||-.|.=+||.|+..=| .+.+ -++..++.++.........+.+.-+|.-|||.+-.+|+
T Consensus 154 vp~fi~Ll~s~~~~v~eQavWALgNIagds~-~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~ 232 (514)
T KOG0166|consen 154 VPIFIQLLSSPSADVREQAVWALGNIAGDSP-DCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPF 232 (514)
T ss_pred hHHHHHHhcCCcHHHHHHHHHHHhccccCCh-HHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcH
Confidence 4448888999999999999999999998843 3333 35667777776655445677889999999999975454
Q ss_pred -cccchHHHHHHhhhhhccccccCCChhhhhhhhHHHHHhhhccC--ccchhHHHHHHHHHHHHHHhcCCCchhhHHHHH
Q 001381 460 -SLPKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYC--HTDMRNILEQIAPHLLTVACYDREVNCRRAAAA 536 (1089)
Q Consensus 460 -~l~~il~~i~~~L~f~~r~~~~svG~~VRDAacfi~WslaR~~~--~~~l~~~~~~l~~~Ll~~alfD~e~~iRRaAsA 536 (1089)
.+..++|.+.+.++-.. ..|. -.+|||++---+ ++...-.++.=....|+.-+-.++.+++-.|..
T Consensus 233 ~~v~~iLp~L~~ll~~~D--------~~Vl---~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLR 301 (514)
T KOG0166|consen 233 DVVAPILPALLRLLHSTD--------EEVL---TDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALR 301 (514)
T ss_pred HHHHHHHHHHHHHHhcCC--------HHHH---HHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHh
Confidence 57889999987775444 4443 567899874432 222333333334445567778888888866655
Q ss_pred HHHHHhcccCCCCCCccceecccccchhhhHHHHHHHHHHHHhhhcchHHHHHHHHhCccC-CCCHHHHHHHHHHHHHHH
Q 001381 537 AFQENVGRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNKIC-HWDKVLRELAAEALSALV 615 (1089)
Q Consensus 537 AlQE~vGR~g~~p~GI~il~~~d~~~v~~r~~a~~~va~~va~~~~Y~~~li~~Ll~~~l~-h~D~~iR~laa~aL~~L~ 615 (1089)
|+ |++ ++-.|+.+=-... ...+++|.. .+. |....+|+-|+-++++++
T Consensus 302 ai-------GNI------vtG~d~QTq~vi~-----------------~~~L~~l~~-ll~~s~~~~ikkEAcW~iSNIt 350 (514)
T KOG0166|consen 302 AI-------GNI------VTGSDEQTQVVIN-----------------SGALPVLSN-LLSSSPKESIKKEACWTISNIT 350 (514)
T ss_pred hc-------cce------eeccHHHHHHHHh-----------------cChHHHHHH-HhccCcchhHHHHHHHHHHHhh
Confidence 52 332 3333333210000 012222221 122 444446666666666666
Q ss_pred ccCchhh----HHHHHHHhccccCCCChhhHHHHHHHHHHH
Q 001381 616 KYDPEYF----ANFILEKLTPFTLSTDLCTRHGATLAAGEV 652 (1089)
Q Consensus 616 ~~~~~~~----~~~vlp~Ll~~l~~~d~~~RHG~lLalaev 652 (1089)
...++.+ -..++|.|+..+++.|..+|-=++.|++-+
T Consensus 351 AG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ 391 (514)
T KOG0166|consen 351 AGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNL 391 (514)
T ss_pred cCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhh
Confidence 5554322 234556666666665555555555555433
No 41
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=96.57 E-value=0.54 Score=56.17 Aligned_cols=278 Identities=17% Similarity=0.213 Sum_probs=154.5
Q ss_pred CCHHHHHHHHHHHHHHHccCchhhHHHHHHHhccccC-----------CCCh-hhHHHHHHHHHHHHHHHhcccccCChh
Q 001381 599 WDKVLRELAAEALSALVKYDPEYFANFILEKLTPFTL-----------STDL-CTRHGATLAAGEVVLALCKYDYALPAD 666 (1089)
Q Consensus 599 ~D~~iR~laa~aL~~L~~~~~~~~~~~vlp~Ll~~l~-----------~~d~-~~RHG~lLalaevl~~l~~~~~~~~~~ 666 (1089)
.|..+-.+.++-++.++...+..-...++..+.+... .... ......+.-++.++.++++...- ++
T Consensus 109 ~~~~~L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~--~~ 186 (415)
T PF12460_consen 109 LDDRVLELLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSL--PD 186 (415)
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCc--cC
Confidence 4577777888888888776654332222322222111 1111 12333444456777777642211 11
Q ss_pred HHHHHHhhhHHHHhhhhccCcchHHHHHHHHHHHHHhhhcCCCCchhhHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHHH
Q 001381 667 KQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLPEKTKRSLLDTLNENL-RHPNSQIQNAAVKALKPFV 745 (1089)
Q Consensus 667 ~~~~i~~i~~~~~~~~l~r~~~gelir~a~~~lI~~ls~~~lp~~~~~~~~~~~~L~~~L-~~~~~~V~~aAa~Al~~l~ 745 (1089)
. ..++..+.+.. ..+ ..+..|.++++++..+.. +.|-.+ ..+.+++.+...+ ....+..+..+.+.+.-+.
T Consensus 187 ~----~~ll~~l~~~~-~~~-~~~~~~~~~~~~la~LvN-K~~~~~-~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~ 258 (415)
T PF12460_consen 187 L----EELLQSLLNLA-LSS-EDEFSRLAALQLLASLVN-KWPDDD-DLDEFLDSLLQSISSSEDSELRPQALEILIWIT 258 (415)
T ss_pred H----HHHHHHHHHHH-HcC-CChHHHHHHHHHHHHHHc-CCCChh-hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHH
Confidence 1 12233332211 111 127888999998887775 344332 2333333333333 3444445555555554443
Q ss_pred HHhhhccCcchhhhhHHHHHHHhCCCChhhhhhHHHHhhccchH---hh------------h-hhHHHHHHHHhhhcccc
Q 001381 746 QTYMVAADSGVVGGISLKYMEQLTDPNPAIRRGSALALGVLPYE---LL------------A-NSWRDVLLKLCSCCLIE 809 (1089)
Q Consensus 746 ~~y~~~~~~~~~~~~v~~~~~~L~s~~~~~r~G~a~aLG~lp~~---~~------------~-~~~~~i~~~L~~~~~~~ 809 (1089)
+...-..+ ....++++++++.+.+ +..+..+|.+++.+... .. + -.+..++..|+...+
T Consensus 259 KaLv~R~~-~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~-- 333 (415)
T PF12460_consen 259 KALVMRGH-PLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFK-- 333 (415)
T ss_pred HHHHHcCC-chHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHh--
Confidence 33322221 2236788888888866 44566667777766322 11 1 123455666666653
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhhhccccccccccCCcchhhhhhhhHHHHHHHHHHhcccCCCCCCCCcchHHHHHHHH
Q 001381 810 ENPEDRDTEARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVD 889 (1089)
Q Consensus 810 ~~~~~~d~e~R~~al~sL~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~L~DYT~D~RGDVGSwVR~aa~~ 889 (1089)
..+.+.|.+.+.||+.++..+.. .+.......+++.|+++|+ .++. -||.++++
T Consensus 334 ----~~~~~~k~~yL~ALs~ll~~vP~--------------~vl~~~l~~LlPLLlqsL~---~~~~-----~v~~s~L~ 387 (415)
T PF12460_consen 334 ----EADDEIKSNYLTALSHLLKNVPK--------------SVLLPELPTLLPLLLQSLS---LPDA-----DVLLSSLE 387 (415)
T ss_pred ----hcChhhHHHHHHHHHHHHhhCCH--------------HHHHHHHHHHHHHHHHHhC---CCCH-----HHHHHHHH
Confidence 22345899999999999886542 4556788999999999992 2211 19999999
Q ss_pred HHHHHHHHhhccCCCCCCCCCccccccCCCCccccccccCHHHHHHHHHHHHHHh
Q 001381 890 GLEICTYILCKRDFVPSPEKPQEVKSELPGNVTAEKTLFDANLATNLVAGIVKQA 944 (1089)
Q Consensus 890 ~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~llrq~ 944 (1089)
.+..++ . ..+..+ .+.++.++.++++++
T Consensus 388 tL~~~l---~-----------------------~~~~~i-~~hl~sLI~~LL~ls 415 (415)
T PF12460_consen 388 TLKMIL---E-----------------------EAPELI-SEHLSSLIPRLLKLS 415 (415)
T ss_pred HHHHHH---H-----------------------cCHHHH-HHHHHHHHHHHHhcC
Confidence 998764 2 123444 346788888888764
No 42
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.37 E-value=5.1 Score=51.38 Aligned_cols=119 Identities=20% Similarity=0.265 Sum_probs=74.0
Q ss_pred hhHHHHHHHHHHHhhhcCCchhhHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHhc
Q 001381 196 APLVMRILGFCKDYLSNAGPMRTIAGLLLAKLLTRPDMPTAFASFVEWTHEVLSSVTDDVMNHFRLLGVVEALAAIFKAG 275 (1089)
Q Consensus 196 ~~l~~rIl~l~~~yL~~~~k~r~~Aa~LLsrl~tR~D~~~~l~~f~~w~~~~l~~~~~~~~~~~~~~G~L~~l~~ilk~~ 275 (1089)
.-+-++|+... +..|.-.|..=..++--.+. .|--...+++++|+...+++.... +.+ |.|..+..++|.=
T Consensus 88 ~~irenIl~~i---v~~p~~iRvql~~~l~~Ii~-~D~p~~Wp~l~d~i~~~Lqs~~~~----~vy-~aLl~l~qL~k~y 158 (1010)
T KOG1991|consen 88 AVIRENILETI---VQVPELIRVQLTACLNTIIK-ADYPEQWPGLLDKIKNLLQSQDAN----HVY-GALLCLYQLFKTY 158 (1010)
T ss_pred HHHHHHHHHHH---HhCchHHHHHHHHHHHHHHh-cCCcccchhHHHHHHHHhcCcchh----hHH-HHHHHHHHHHHHH
Confidence 34556666543 34477777766666644433 455455889999998888764332 333 7888888887743
Q ss_pred ------Chhhh----hhhhHHHHHhhhhhhccCcCCCchhHHHHHHHHHHHhhhcccCC
Q 001381 276 ------GRKVL----LDVIPVVWNDASTMLKSGSAARSPLLRKYLMKLTQRLGLTCLPR 324 (1089)
Q Consensus 276 ------~~~~l----~~~~~~i~~~~~~l~~~~~~~~~~l~rKl~~Kl~~rlal~~L~p 324 (1089)
.|..+ ..+.+.|++....+-... .-++..+.|++.|++.-+-..-||+
T Consensus 159 e~k~~eeR~~l~~~v~~~fP~il~~~~~ll~~~-s~~s~el~klIlKifks~~~~~LP~ 216 (1010)
T KOG1991|consen 159 EWKKDEERQPLGEAVEELFPDILQIFNGLLSQE-SYQSVELQKLILKIFKSLIYYELPL 216 (1010)
T ss_pred hhccccccccHHHHHHHHHHHHHHHHHhhcccc-chHHHHHHHHHHHHHHHHHHHhCCH
Confidence 24433 445555555333332211 1236889999999998888777775
No 43
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.26 E-value=0.0062 Score=57.76 Aligned_cols=87 Identities=23% Similarity=0.275 Sum_probs=71.4
Q ss_pred chHHHHHHHHHHHhc-CCCCCCcccchHHHHHHhhhhhccccccCCChhhhhhhhHHHHHhhhccCccchhHHHHHHHHH
Q 001381 439 SWHGGCLALAELARR-GLLLPSSLPKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPH 517 (1089)
Q Consensus 439 ~wHg~~LaLael~~~-~ll~p~~l~~il~~i~~~L~f~~r~~~~svG~~VRDAacfi~WslaR~~~~~~l~~~~~~l~~~ 517 (1089)
..+|++.+||..+-. +--...++++|+|.|++++..+. ..||=+||-.+.-+++.... ++.++...||..
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d--------~rVRy~AcEaL~ni~k~~~~-~~l~~f~~IF~~ 72 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQD--------SRVRYYACEALYNISKVARG-EILPYFNEIFDA 72 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCc--------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 468999999988543 22245578999999999988777 66999999999999999875 556799999988
Q ss_pred HHHHHhcCCCchhhHHHH
Q 001381 518 LLTVACYDREVNCRRAAA 535 (1089)
Q Consensus 518 Ll~~alfD~e~~iRRaAs 535 (1089)
| ...+.|++.+||.||.
T Consensus 73 L-~kl~~D~d~~Vr~~a~ 89 (97)
T PF12755_consen 73 L-CKLSADPDENVRSAAE 89 (97)
T ss_pred H-HHHHcCCchhHHHHHH
Confidence 6 5899999999999874
No 44
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.70 E-value=1.4 Score=54.65 Aligned_cols=253 Identities=14% Similarity=0.150 Sum_probs=133.9
Q ss_pred CccCCCCHHHHHHHHHHHHHHHccCchhhHHHHHHHhccccCCCChhhHHHHHHHHHHHHHHHhcccccCChhHHHH---
Q 001381 594 NKICHWDKVLRELAAEALSALVKYDPEYFANFILEKLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPADKQKI--- 670 (1089)
Q Consensus 594 ~~l~h~D~~iR~laa~aL~~L~~~~~~~~~~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~l~~~~~~~~~~~~~~--- 670 (1089)
.-|.|++..+|-- .|+-||+.....+.+..+|.+.+++..+...+|-.+++|+.++...+.... +..++.+++
T Consensus 106 kDLQHPNEyiRG~---TLRFLckLkE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~L~-pDapeLi~~fL~ 181 (948)
T KOG1058|consen 106 KDLQHPNEYIRGS---TLRFLCKLKEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHLI-PDAPELIESFLL 181 (948)
T ss_pred hhccCchHhhcch---hhhhhhhcCcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhhc-CChHHHHHHHHH
Confidence 3688999999954 466666655555777888999999999999999999999998876643221 111111111
Q ss_pred -----------------------HHhhhHHHHhhhhccCcchHHHHHHHHHHHHHhhhcCCCCchhhHHHHHHHHHHhcC
Q 001381 671 -----------------------VAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLPEKTKRSLLDTLNENLR 727 (1089)
Q Consensus 671 -----------------------i~~i~~~~~~~~l~r~~~gelir~a~~~lI~~ls~~~lp~~~~~~~~~~~~L~~~L~ 727 (1089)
+..+...+.+- +.-|+.+-.++..+|...+..+ | .-..++++.+-..|.
T Consensus 182 ~e~DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi----~~~~~~LqlViVE~Irkv~~~~-p---~~~~~~i~~i~~lL~ 253 (948)
T KOG1058|consen 182 TEQDPSCKRNAFLMLFTTDPERALNYLLSNIDQI----PSFNDSLQLVIVELIRKVCLAN-P---AEKARYIRCIYNLLS 253 (948)
T ss_pred hccCchhHHHHHHHHHhcCHHHHHHHHHhhHhhc----cCccHHHHHHHHHHHHHHHhcC-H---HHhhHHHHHHHHHHh
Confidence 00000111100 0114555566667776655422 1 233567777777777
Q ss_pred CCcHHHHHHHHHHHHHHHHHhhhccCcchhhhhHHHHHHHhC---CCChhhhhhHHHHhhccchHhhhhhHHHHHHHHhh
Q 001381 728 HPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLT---DPNPAIRRGSALALGVLPYELLANSWRDVLLKLCS 804 (1089)
Q Consensus 728 ~~~~~V~~aAa~Al~~l~~~y~~~~~~~~~~~~v~~~~~~L~---s~~~~~r~G~a~aLG~lp~~~~~~~~~~i~~~L~~ 804 (1089)
..++.|+..|+-++..++. +...+..-...|++.+. ++|+- ...|--+.. ++..-.+++..|+-
T Consensus 254 stssaV~fEaa~tlv~lS~------~p~alk~Aa~~~i~l~~kesdnnvk-----lIvldrl~~--l~~~~~~il~~l~m 320 (948)
T KOG1058|consen 254 STSSAVIFEAAGTLVTLSN------DPTALKAAASTYIDLLVKESDNNVK-----LIVLDRLSE--LKALHEKILQGLIM 320 (948)
T ss_pred cCCchhhhhhcceEEEccC------CHHHHHHHHHHHHHHHHhccCcchh-----hhhHHHHHH--HhhhhHHHHHHHHH
Confidence 7788888777665544432 22333444455555541 33321 111100000 01111223333221
Q ss_pred hccccCCCCCCCHHHHHHHHHHHHHHHhhhccccccccccCCcchhhhhhhhHHHHHHHHHHhcccCCCCCCCCcchHHH
Q 001381 805 CCLIEENPEDRDTEARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVR 884 (1089)
Q Consensus 805 ~~~~~~~~~~~d~e~R~~al~sL~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~L~DYT~D~RGDVGSwVR 884 (1089)
.+..- .+..|-+.|+.++.=.-.+.. ..+++++++.|-.-+.+ |.+.--|-+-.-|
T Consensus 321 DvLrv--Lss~dldvr~Ktldi~ldLvs---------------------srNvediv~~Lkke~~k-T~~~e~d~~~~yR 376 (948)
T KOG1058|consen 321 DVLRV--LSSPDLDVRSKTLDIALDLVS---------------------SRNVEDIVQFLKKEVMK-THNEESDDNGKYR 376 (948)
T ss_pred HHHHH--cCcccccHHHHHHHHHHhhhh---------------------hccHHHHHHHHHHHHHh-ccccccccchHHH
Confidence 11100 134567888888764333332 14567788888777766 3333333444457
Q ss_pred HHHHHHHHHHH
Q 001381 885 EAAVDGLEICT 895 (1089)
Q Consensus 885 ~aa~~~l~~l~ 895 (1089)
..-++++..+.
T Consensus 377 qlLiktih~ca 387 (948)
T KOG1058|consen 377 QLLIKTIHACA 387 (948)
T ss_pred HHHHHHHHHHh
Confidence 77777777653
No 45
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.54 E-value=0.46 Score=58.52 Aligned_cols=100 Identities=21% Similarity=0.195 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHhcCCCchhhHHHHHHHH-HHhcccCCCCCCccceecccccchhhhHHHHHHHHHHHHhhhcchHHHHHH
Q 001381 512 EQIAPHLLTVACYDREVNCRRAAAAAFQ-ENVGRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDE 590 (1089)
Q Consensus 512 ~~l~~~Ll~~alfD~e~~iRRaAsAAlQ-E~vGR~g~~p~GI~il~~~d~~~v~~r~~a~~~va~~va~~~~Y~~~li~~ 590 (1089)
+.-|.++|...+.|.+..+|++..=++- +.+|.- ....|..
T Consensus 517 qe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTg--------------------------------------nnkair~ 558 (929)
T KOG2062|consen 517 QEDADPLIKELLRDKDPILRYGGMYTLALAYVGTG--------------------------------------NNKAIRR 558 (929)
T ss_pred hhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccC--------------------------------------chhhHHH
Confidence 3456677788888888888887543321 112211 1235666
Q ss_pred HHhCccCCCCHHHHHHHHHHHHHHHccCchhhHHHHHHHhccc-cCCCChhhHHHHHHHHHHHHH
Q 001381 591 LLYNKICHWDKVLRELAAEALSALVKYDPEYFANFILEKLTPF-TLSTDLCTRHGATLAAGEVVL 654 (1089)
Q Consensus 591 Ll~~~l~h~D~~iR~laa~aL~~L~~~~~~~~~~~vlp~Ll~~-l~~~d~~~RHG~lLalaevl~ 654 (1089)
|+-.-+.+.|-.+|+.|--|||-++..+|+.+... .+. ..+.+..+|.|+.+|++--..
T Consensus 559 lLh~aVsD~nDDVrRaAVialGFVl~~dp~~~~s~-----V~lLses~N~HVRyGaA~ALGIaCA 618 (929)
T KOG2062|consen 559 LLHVAVSDVNDDVRRAAVIALGFVLFRDPEQLPST-----VSLLSESYNPHVRYGAAMALGIACA 618 (929)
T ss_pred hhcccccccchHHHHHHHHHheeeEecChhhchHH-----HHHHhhhcChhhhhhHHHHHhhhhc
Confidence 66666778899999999999999999998865543 222 356778999999999886554
No 46
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.40 E-value=9.8 Score=47.03 Aligned_cols=124 Identities=15% Similarity=0.070 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHhhhcCCCCchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCcchhhhhHHHHHHHhCCC
Q 001381 692 MRSAVSRFIECISLSFVSLPEKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLTDP 771 (1089)
Q Consensus 692 ir~a~~~lI~~ls~~~lp~~~~~~~~~~~~L~~~L~~~~~~V~~aAa~Al~~l~~~y~~~~~~~~~~~~v~~~~~~L~s~ 771 (1089)
+|.|+..-+..++.+...+ ...-++.|-+.+.+..+.||..|..++..+.... ...++.++.+++-|.+.
T Consensus 389 VR~AAV~Sl~~La~ssP~F----A~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l------~i~eeql~~il~~L~D~ 458 (823)
T KOG2259|consen 389 VRRAAVASLCSLATSSPGF----AVRALDFLVDMFNDEIEVVRLKAIFALTMISVHL------AIREEQLRQILESLEDR 458 (823)
T ss_pred HHHHHHHHHHHHHcCCCCc----HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHh------eecHHHHHHHHHHHHhc
Confidence 7777777676777655333 2344555666778899999999999999887752 22268888999999988
Q ss_pred ChhhhhhHHHHhhccchHhhhhhHHHHHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHhh
Q 001381 772 NPAIRRGSALALGVLPYELLANSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCET 833 (1089)
Q Consensus 772 ~~~~r~G~a~aLG~lp~~~~~~~~~~i~~~L~~~~~~~~~~~~~d~e~R~~al~sL~~i~~~ 833 (1089)
++.+|.+.=..|+..-.... .-+...+..|..+.. +.+.-|-..+.++..+-+.
T Consensus 459 s~dvRe~l~elL~~~~~~d~-~~i~m~v~~lL~~L~-------kyPqDrd~i~~cm~~iGqn 512 (823)
T KOG2259|consen 459 SVDVREALRELLKNARVSDL-ECIDMCVAHLLKNLG-------KYPQDRDEILRCMGRIGQN 512 (823)
T ss_pred CHHHHHHHHHHHHhcCCCcH-HHHHHHHHHHHHHhh-------hCCCCcHHHHHHHHHHhcc
Confidence 99999988777776643322 224445555555542 2233344566666665443
No 47
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.38 E-value=0.02 Score=42.54 Aligned_cols=30 Identities=37% Similarity=0.484 Sum_probs=26.8
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHHHhh
Q 001381 385 IIEILLSGLRDTDTVVRWSAAKGIGRITSC 414 (1089)
Q Consensus 385 iI~~ll~~L~d~dt~vR~saAK~l~rI~~~ 414 (1089)
+++.+++.++|++..||.+|+++||.|++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 578899999999999999999999999875
No 48
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=95.32 E-value=1.8 Score=51.67 Aligned_cols=208 Identities=16% Similarity=0.032 Sum_probs=122.9
Q ss_pred HHHHHhCccCCCCHHHHHHHHHHHHHHHccCchhhHHHHHHHhccccCCCChhhHHHHHHHHHHHHHHHhcccccCChhH
Q 001381 588 VDELLYNKICHWDKVLRELAAEALSALVKYDPEYFANFILEKLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPADK 667 (1089)
Q Consensus 588 i~~Ll~~~l~h~D~~iR~laa~aL~~L~~~~~~~~~~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~l~~~~~~~~~~~ 667 (1089)
++.|+. .+.+.|..+|.-+++||+++-.. ...+.|++.+.+.+...|-+++-+++..- .+.
T Consensus 88 ~~~L~~-~L~d~~~~vr~aaa~ALg~i~~~-------~a~~~L~~~L~~~~p~vR~aal~al~~r~-----------~~~ 148 (410)
T TIGR02270 88 LRSVLA-VLQAGPEGLCAGIQAALGWLGGR-------QAEPWLEPLLAASEPPGRAIGLAALGAHR-----------HDP 148 (410)
T ss_pred HHHHHH-HhcCCCHHHHHHHHHHHhcCCch-------HHHHHHHHHhcCCChHHHHHHHHHHHhhc-----------cCh
Confidence 455554 55688999999999999988543 24566777788888888887665554421 112
Q ss_pred HHHHHhhhHHHHhhhhccCcchHHHHHHHHHHHHHhhhcCCCCchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Q 001381 668 QKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLPEKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQT 747 (1089)
Q Consensus 668 ~~~i~~i~~~~~~~~l~r~~~gelir~a~~~lI~~ls~~~lp~~~~~~~~~~~~L~~~L~~~~~~V~~aAa~Al~~l~~~ 747 (1089)
.+.+...+. + ....+|.++++.++.+.... ....|...+.+.++.|+.+|+.++..+-.
T Consensus 149 ~~~L~~~L~---d-------~d~~Vra~A~raLG~l~~~~----------a~~~L~~al~d~~~~VR~aA~~al~~lG~- 207 (410)
T TIGR02270 149 GPALEAALT---H-------EDALVRAAALRALGELPRRL----------SESTLRLYLRDSDPEVRFAALEAGLLAGS- 207 (410)
T ss_pred HHHHHHHhc---C-------CCHHHHHHHHHHHHhhcccc----------chHHHHHHHcCCCHHHHHHHHHHHHHcCC-
Confidence 222222221 1 23467788888887665311 12224556899999999999999854421
Q ss_pred hhhccCcchhhhhHHHHHHHhCCCChhhhhhHHHHhhccchHhhhhhHHHHHHHHhhhccccCCCCCCCHHHHHHHHHHH
Q 001381 748 YMVAADSGVVGGISLKYMEQLTDPNPAIRRGSALALGVLPYELLANSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGL 827 (1089)
Q Consensus 748 y~~~~~~~~~~~~v~~~~~~L~s~~~~~r~G~a~aLG~lp~~~~~~~~~~i~~~L~~~~~~~~~~~~~d~e~R~~al~sL 827 (1089)
..-+.-............+...+.+++..+.. +++.-|.... .+..+|+.++.++
T Consensus 208 ----------~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~~-------~a~~~L~~ll--------~d~~vr~~a~~Al 262 (410)
T TIGR02270 208 ----------RLAWGVCRRFQVLEGGPHRQRLLVLLAVAGGP-------DAQAWLRELL--------QAAATRREALRAV 262 (410)
T ss_pred ----------HhHHHHHHHHHhccCccHHHHHHHHHHhCCch-------hHHHHHHHHh--------cChhhHHHHHHHH
Confidence 22233333322233333333334444333211 3344444433 2345999999999
Q ss_pred HHHHhhhccccccccccCCcchhhhhhhhHHHHHHHHHHhcccCCCCCCCCcchHHHHHHHHHHHHHH
Q 001381 828 VSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEICT 895 (1089)
Q Consensus 828 ~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~L~DYT~D~RGDVGSwVR~aa~~~l~~l~ 895 (1089)
+.+ |. ...+..|+..++|=. +|-.|-++++.++
T Consensus 263 G~l----g~---------------------p~av~~L~~~l~d~~----------~aR~A~eA~~~It 295 (410)
T TIGR02270 263 GLV----GD---------------------VEAAPWCLEAMREPP----------WARLAGEAFSLIT 295 (410)
T ss_pred HHc----CC---------------------cchHHHHHHHhcCcH----------HHHHHHHHHHHhh
Confidence 874 21 135677888886521 7778888888876
No 49
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=95.28 E-value=0.99 Score=51.93 Aligned_cols=187 Identities=29% Similarity=0.281 Sum_probs=111.3
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhCcchhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHHhcCCCCCCccc
Q 001381 383 EEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSLSEEVFSSVLELFSPGEGDGSWHGGCLALAELARRGLLLPSSLP 462 (1089)
Q Consensus 383 E~iI~~ll~~L~d~dt~vR~saAK~l~rI~~~L~~~~a~~vi~~il~~l~~~~~~~~wHg~~LaLael~~~~ll~p~~l~ 462 (1089)
+..++.++..+.|++..+|+.++..++.+... +.++.+.+.+.+.+
T Consensus 42 ~~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~-------~av~~l~~~l~d~~--------------------------- 87 (335)
T COG1413 42 PEAADELLKLLEDEDLLVRLSAAVALGELGSE-------EAVPLLRELLSDED--------------------------- 87 (335)
T ss_pred hhhHHHHHHHHcCCCHHHHHHHHHHHhhhchH-------HHHHHHHHHhcCCC---------------------------
Confidence 46778888889999999999999996665533 45555555553321
Q ss_pred chHHHHHHhhhhhccccccCCChhhhhhhhHHHHHhhhccCccchhHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHh
Q 001381 463 KVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAAAAAFQENV 542 (1089)
Q Consensus 463 ~il~~i~~~L~f~~r~~~~svG~~VRDAacfi~WslaR~~~~~~l~~~~~~l~~~Ll~~alfD~e~~iRRaAsAAlQE~v 542 (1089)
..||++|-| ++.+.-++....+.+. ++.+ |.+..+|+.|.-||
T Consensus 88 ----------------------~~vr~~a~~---aLg~~~~~~a~~~li~-----~l~~---d~~~~vR~~aa~aL---- 130 (335)
T COG1413 88 ----------------------PRVRDAAAD---ALGELGDPEAVPPLVE-----LLEN---DENEGVRAAAARAL---- 130 (335)
T ss_pred ----------------------HHHHHHHHH---HHHccCChhHHHHHHH-----HHHc---CCcHhHHHHHHHHH----
Confidence 147777777 5666655544333222 1111 88888888888885
Q ss_pred cccCCC---CCCccceecccc--------cchhhhHHHHHHHHHHHHhh--hcchHHHHHHHHhCccCCCCHHHHHHHHH
Q 001381 543 GRQGNY---PHGIDIVNTADY--------FSLSSRVYSYLHVAVFIAQY--EGYLYPFVDELLYNKICHWDKVLRELAAE 609 (1089)
Q Consensus 543 GR~g~~---p~GI~il~~~d~--------~~v~~r~~a~~~va~~va~~--~~Y~~~li~~Ll~~~l~h~D~~iR~laa~ 609 (1089)
|+.|.. +-=+.+++..+. ..+.. ........++.+ +.....+++ .+.+.+..+|.-|+.
T Consensus 131 ~~~~~~~a~~~l~~~l~~~~~~~a~~~~~~~~~~---~r~~a~~~l~~~~~~~~~~~l~~-----~l~~~~~~vr~~Aa~ 202 (335)
T COG1413 131 GKLGDERALDPLLEALQDEDSGSAAAALDAALLD---VRAAAAEALGELGDPEAIPLLIE-----LLEDEDADVRRAAAS 202 (335)
T ss_pred HhcCchhhhHHHHHHhccchhhhhhhhccchHHH---HHHHHHHHHHHcCChhhhHHHHH-----HHhCchHHHHHHHHH
Confidence 444421 101111211110 00000 011112222222 344555554 444667799999999
Q ss_pred HHHHHHccCchhhHHHHHHHhccccCCCChhhHHHHHHHHHHHH
Q 001381 610 ALSALVKYDPEYFANFILEKLTPFTLSTDLCTRHGATLAAGEVV 653 (1089)
Q Consensus 610 aL~~L~~~~~~~~~~~vlp~Ll~~l~~~d~~~RHG~lLalaevl 653 (1089)
+|+.+.... ..+.+.+...+.+.++.+|.-++.+++++-
T Consensus 203 aL~~~~~~~-----~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~ 241 (335)
T COG1413 203 ALGQLGSEN-----VEAADLLVKALSDESLEVRKAALLALGEIG 241 (335)
T ss_pred HHHHhhcch-----hhHHHHHHHHhcCCCHHHHHHHHHHhcccC
Confidence 999998764 234567777888999999998888887753
No 50
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=95.26 E-value=0.41 Score=51.87 Aligned_cols=185 Identities=17% Similarity=0.159 Sum_probs=105.6
Q ss_pred ccCCCChhhHHHHHHHHHHHHHHHhcccccCChhHHHHHHhhhHHHHhhhhccCcchHHHHHHHHHHHHHhhhcCCCCc-
Q 001381 633 FTLSTDLCTRHGATLAAGEVVLALCKYDYALPADKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLP- 711 (1089)
Q Consensus 633 ~l~~~d~~~RHG~lLalaevl~~l~~~~~~~~~~~~~~i~~i~~~~~~~~l~r~~~gelir~a~~~lI~~ls~~~lp~~- 711 (1089)
.-.+.||..|.-++..+-.++.+- ......+.....+..+...+.+. ...... -+...+|.++..++.. +.-.
T Consensus 15 ~~~~~~W~~r~~al~~L~~l~~~~--~~~~~~~~~~~~l~~~~~~i~~~--l~d~Rs-~v~~~A~~~l~~l~~~-l~~~~ 88 (228)
T PF12348_consen 15 KESESDWEERVEALQKLRSLIKGN--APEDFPPDFVECLRQLLDAIIKQ--LSDLRS-KVSKTACQLLSDLARQ-LGSHF 88 (228)
T ss_dssp HHT-SSHHHHHHHHHHHHHHHHH---B-----HHHHHHHH---HHHHH---S-HH----HHHHHHHHHHHHHHH-HGGGG
T ss_pred cCCccCHHHHHHHHHHHHHHHHcC--CccccHHHHHHHHHHhHHHHHHH--HhhhHH-HHHHHHHHHHHHHHHH-HhHhH
Confidence 346789999999999988888754 11122334444454333333221 011112 2445567777776642 1111
Q ss_pred hhhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCcchhhhh-HHHHHHHhCCCChhhhhhHHHHhhccchHh
Q 001381 712 EKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGI-SLKYMEQLTDPNPAIRRGSALALGVLPYEL 790 (1089)
Q Consensus 712 ~~~~~~~~~~L~~~L~~~~~~V~~aAa~Al~~l~~~y~~~~~~~~~~~~-v~~~~~~L~s~~~~~r~G~a~aLG~lp~~~ 790 (1089)
....+.+...|...+.+....|+.+|..++..++..+- ....+ ...+....++.++..|...+..+..+-...
T Consensus 89 ~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~------~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~ 162 (228)
T PF12348_consen 89 EPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS------YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKW 162 (228)
T ss_dssp HHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC------cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHc
Confidence 23456777778888899999999999999998877432 01355 455555667889999988887766552111
Q ss_pred ------hhh--hHHHHHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHhhhc
Q 001381 791 ------LAN--SWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLT 835 (1089)
Q Consensus 791 ------~~~--~~~~i~~~L~~~~~~~~~~~~~d~e~R~~al~sL~~i~~~~g 835 (1089)
+.. .+..+.+.+..++ .+.+++.|..|-.++..+....|
T Consensus 163 ~~~~~~l~~~~~~~~l~~~l~~~l------~D~~~~VR~~Ar~~~~~l~~~~~ 209 (228)
T PF12348_consen 163 GSDSSVLQKSAFLKQLVKALVKLL------SDADPEVREAARECLWALYSHFP 209 (228)
T ss_dssp ----GGG--HHHHHHHHHHHHHHH------TSS-HHHHHHHHHHHHHHHHHH-
T ss_pred cchHhhhcccchHHHHHHHHHHHC------CCCCHHHHHHHHHHHHHHHHHCC
Confidence 111 2356667776665 57789999999999998876654
No 51
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.22 E-value=0.86 Score=55.10 Aligned_cols=265 Identities=15% Similarity=0.130 Sum_probs=159.3
Q ss_pred HHHHHHhCccCCCCHHHHHHHHHHHHHHHccCchh----hHHHHHHHhccccCCCChhhHHHHHHHHHHHHHHHhccccc
Q 001381 587 FVDELLYNKICHWDKVLRELAAEALSALVKYDPEY----FANFILEKLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYA 662 (1089)
Q Consensus 587 li~~Ll~~~l~h~D~~iR~laa~aL~~L~~~~~~~----~~~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~l~~~~~~ 662 (1089)
+++.|+...-.+.++.++..||-||-+++...++. +....+|.++..+.+++..++.-++.||+-++..-
T Consensus 110 ~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds------ 183 (514)
T KOG0166|consen 110 VVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDS------ 183 (514)
T ss_pred cHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCC------
Confidence 56666653224777999999999999999876542 23457888999999999999999999999987321
Q ss_pred CChhHHHHHH--hhhHHHHhhhhccCcchHHHHHHHHHHHHHhhhcC-CCCchhhHHHHHHHHHHhcCCCcHHHHHHHHH
Q 001381 663 LPADKQKIVA--GIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSF-VSLPEKTKRSLLDTLNENLRHPNSQIQNAAVK 739 (1089)
Q Consensus 663 ~~~~~~~~i~--~i~~~~~~~~l~r~~~gelir~a~~~lI~~ls~~~-lp~~~~~~~~~~~~L~~~L~~~~~~V~~aAa~ 739 (1089)
+...+.+. .+++.+.. -+.....-.++|.++-. +.++|..+ .|-..+.+...+..|...+.+.+++|...|+-
T Consensus 184 --~~~Rd~vl~~g~l~pLl~-~l~~~~~~~~lRn~tW~-LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~W 259 (514)
T KOG0166|consen 184 --PDCRDYVLSCGALDPLLR-LLNKSDKLSMLRNATWT-LSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACW 259 (514)
T ss_pred --hHHHHHHHhhcchHHHHH-HhccccchHHHHHHHHH-HHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 11111111 11222211 01111111245555443 34455433 33334677788888999999999999999998
Q ss_pred HHHHHHHHhhhccCcchh-----hhhHHHHHHHhCCCChhhhhhHHHHhhccchHhhhhhHH-----HHHHHHhhhcccc
Q 001381 740 ALKPFVQTYMVAADSGVV-----GGISLKYMEQLTDPNPAIRRGSALALGVLPYELLANSWR-----DVLLKLCSCCLIE 809 (1089)
Q Consensus 740 Al~~l~~~y~~~~~~~~~-----~~~v~~~~~~L~s~~~~~r~G~a~aLG~lp~~~~~~~~~-----~i~~~L~~~~~~~ 809 (1089)
|++-+.. .+.+.+ ..+++++++.|....+.++--+..++|.+--..- .+-+ ..+..|......+
T Consensus 260 AlsyLsd-----g~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d-~QTq~vi~~~~L~~l~~ll~~s 333 (514)
T KOG0166|consen 260 ALSYLTD-----GSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSD-EQTQVVINSGALPVLSNLLSSS 333 (514)
T ss_pred HHHHHhc-----CChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccH-HHHHHHHhcChHHHHHHHhccC
Confidence 8875542 222322 5778899999987666666666777887642210 1111 1223333332111
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhhhccccccccccCCcchhhhhhhhHHHHHHHHHHhcccCCCCCCCCcchHHHHHHHH
Q 001381 810 ENPEDRDTEARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVD 889 (1089)
Q Consensus 810 ~~~~~~d~e~R~~al~sL~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~L~DYT~D~RGDVGSwVR~aa~~ 889 (1089)
.+ ...|..|...++.|.. |.. .+ +-.-....+++.|+..|..+.-+ .|.+|.-
T Consensus 334 ~~-----~~ikkEAcW~iSNItA--G~~---~q---------iqaVida~l~p~Li~~l~~~ef~--------~rKEAaw 386 (514)
T KOG0166|consen 334 PK-----ESIKKEACWTISNITA--GNQ---EQ---------IQAVIDANLIPVLINLLQTAEFD--------IRKEAAW 386 (514)
T ss_pred cc-----hhHHHHHHHHHHHhhc--CCH---HH---------HHHHHHcccHHHHHHHHhccchH--------HHHHHHH
Confidence 11 1368888888988753 321 11 11122335678888888554332 7999999
Q ss_pred HHHHH
Q 001381 890 GLEIC 894 (1089)
Q Consensus 890 ~l~~l 894 (1089)
+|..+
T Consensus 387 aIsN~ 391 (514)
T KOG0166|consen 387 AISNL 391 (514)
T ss_pred HHHhh
Confidence 98765
No 52
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.18 E-value=2 Score=53.69 Aligned_cols=49 Identities=18% Similarity=0.297 Sum_probs=37.0
Q ss_pred ccCCCCHHHHHHHHHHHHHHHccCchhhHHHHHHHhccccCCCChhhHHHHHHH
Q 001381 595 KICHWDKVLRELAAEALSALVKYDPEYFANFILEKLTPFTLSTDLCTRHGATLA 648 (1089)
Q Consensus 595 ~l~h~D~~iR~laa~aL~~L~~~~~~~~~~~vlp~Ll~~l~~~d~~~RHG~lLa 648 (1089)
.+.|.|+.+|+=|+.|..++..+.|+- .++.++..-+.+...+ ||++++
T Consensus 150 Ll~~~~~~irKKA~Lca~r~irK~P~l-~e~f~~~~~~lL~ek~----hGVL~~ 198 (866)
T KOG1062|consen 150 LLQHRDPYIRKKAALCAVRFIRKVPDL-VEHFVIAFRKLLCEKH----HGVLIA 198 (866)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHcCchH-HHHhhHHHHHHHhhcC----Cceeee
Confidence 455999999999999999999999973 4455666656666655 666555
No 53
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=94.95 E-value=0.17 Score=46.05 Aligned_cols=84 Identities=27% Similarity=0.328 Sum_probs=61.8
Q ss_pred HHHhc-CCCcHHHHHHHHHHHHHHHHHhhhccCcchhhhhHHHHHHHhCCCChhhhhhHHHHhhccchHhhhhhHHHHHH
Q 001381 722 LNENL-RHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLTDPNPAIRRGSALALGVLPYELLANSWRDVLL 800 (1089)
Q Consensus 722 L~~~L-~~~~~~V~~aAa~Al~~l~~~y~~~~~~~~~~~~v~~~~~~L~s~~~~~r~G~a~aLG~lp~~~~~~~~~~i~~ 800 (1089)
|...| .+++..||..|+.++..+- ..+.++.+.+.+++.++..|+-++.+||.+.. .+.+.
T Consensus 4 L~~~l~~~~~~~vr~~a~~~L~~~~-----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~-------~~~~~ 65 (88)
T PF13646_consen 4 LLQLLQNDPDPQVRAEAARALGELG-----------DPEAIPALIELLKDEDPMVRRAAARALGRIGD-------PEAIP 65 (88)
T ss_dssp HHHHHHTSSSHHHHHHHHHHHHCCT-----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH-------HHTHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHcC-----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-------HHHHH
Confidence 33444 7999999999988886331 25788888888999999999999999999853 23445
Q ss_pred HHhhhccccCCCCCCCHHHHHHHHHHHH
Q 001381 801 KLCSCCLIEENPEDRDTEARVNAVRGLV 828 (1089)
Q Consensus 801 ~L~~~~~~~~~~~~~d~e~R~~al~sL~ 828 (1089)
.|+..+. +..+...|..|+.+|+
T Consensus 66 ~L~~~l~-----~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 66 ALIKLLQ-----DDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHHT-----C-SSHHHHHHHHHHHH
T ss_pred HHHHHHc-----CCCcHHHHHHHHhhcC
Confidence 5555542 3345667999999885
No 54
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.84 E-value=2.1 Score=53.05 Aligned_cols=171 Identities=16% Similarity=0.202 Sum_probs=90.1
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCcchhhhhHHHHHHH-hCCCChhhhhhHHHHhhccchHhhhhhHHHHH
Q 001381 721 TLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQ-LTDPNPAIRRGSALALGVLPYELLANSWRDVL 799 (1089)
Q Consensus 721 ~L~~~L~~~~~~V~~aAa~Al~~l~~~y~~~~~~~~~~~~v~~~~~~-L~s~~~~~r~G~a~aLG~lp~~~~~~~~~~i~ 799 (1089)
.|.+.+.+.++.+|....-++ ...|..+. ....|+++++- +.+.|-.+||.+..|||-+-..- ......++
T Consensus 523 lI~el~~dkdpilR~~Gm~t~---alAy~GTg----nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~d-p~~~~s~V 594 (929)
T KOG2062|consen 523 LIKELLRDKDPILRYGGMYTL---ALAYVGTG----NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRD-PEQLPSTV 594 (929)
T ss_pred HHHHHhcCCchhhhhhhHHHH---HHHHhccC----chhhHHHhhcccccccchHHHHHHHHHheeeEecC-hhhchHHH
Confidence 344444555555554433222 22232221 13555555554 45566666666666666552111 11222334
Q ss_pred HHHhhhccccCCCCCCCHHHHHHHHHHHHHHHhhhccccccccccCCcchhhhhhhhHHHHHHHHHHhcccCCCCCCCCc
Q 001381 800 LKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGDV 879 (1089)
Q Consensus 800 ~~L~~~~~~~~~~~~~d~e~R~~al~sL~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~L~DYT~D~RGDV 879 (1089)
..|. +.-....|-.+..+|+-.|.--|.. .-..+++.+.. |.
T Consensus 595 ~lLs---------es~N~HVRyGaA~ALGIaCAGtG~~------------------eAi~lLepl~~-----------D~ 636 (929)
T KOG2062|consen 595 SLLS---------ESYNPHVRYGAAMALGIACAGTGLK------------------EAINLLEPLTS-----------DP 636 (929)
T ss_pred HHHh---------hhcChhhhhhHHHHHhhhhcCCCcH------------------HHHHHHhhhhc-----------Ch
Confidence 3331 2234566666666666555322211 01122222221 45
Q ss_pred chHHHHHHHHHHHHHHHHhhccCCCCCCCCCccccccCCCCccccccccCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 001381 880 GSWVREAAVDGLEICTYILCKRDFVPSPEKPQEVKSELPGNVTAEKTLFDANLATNLVAGIVKQAVEKMDKLREAAAKVL 959 (1089)
Q Consensus 880 GSwVR~aa~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~llrq~~EkiD~vR~~A~~~L 959 (1089)
-++||..||-++.-++ . +..+. .. +.+..+...+.|...||=+..=.+=|.+|
T Consensus 637 ~~fVRQgAlIa~amIm---~----------------------Q~t~~-~~-pkv~~frk~l~kvI~dKhEd~~aK~GAil 689 (929)
T KOG2062|consen 637 VDFVRQGALIALAMIM---I----------------------QQTEQ-LC-PKVNGFRKQLEKVINDKHEDGMAKFGAIL 689 (929)
T ss_pred HHHHHHHHHHHHHHHH---H----------------------hcccc-cC-chHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 6789999999997654 2 11111 11 23566667888888999998888888888
Q ss_pred HHHhh
Q 001381 960 RRILY 964 (1089)
Q Consensus 960 ~~l~~ 964 (1089)
.+-+-
T Consensus 690 AqGil 694 (929)
T KOG2062|consen 690 AQGIL 694 (929)
T ss_pred Hhhhh
Confidence 87653
No 55
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.77 E-value=4.7 Score=50.54 Aligned_cols=196 Identities=18% Similarity=0.231 Sum_probs=112.8
Q ss_pred hhhccCccchhHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHhcccCCCCCCccceecccccchhhhHHHHHHHHHHH
Q 001381 498 FGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAAAAAFQENVGRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFI 577 (1089)
Q Consensus 498 laR~~~~~~l~~~~~~l~~~Ll~~alfD~e~~iRRaAsAAlQE~vGR~g~~p~GI~il~~~d~~~v~~r~~a~~~va~~v 577 (1089)
-.++|.. .+|...-++.+.++.-+-|+++.||-.|..-++. +|.+.+
T Consensus 72 Yl~nYa~--~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~--l~v~~i----------------------------- 118 (734)
T KOG1061|consen 72 YLMNYAK--GKPDLAILAVNTFLKDCEDPNPLIRALALRTMGC--LRVDKI----------------------------- 118 (734)
T ss_pred HHHHhhc--cCchHHHhhhhhhhccCCCCCHHHHHHHhhceee--EeehHH-----------------------------
Confidence 4455654 4677888999999999999999999988666433 222211
Q ss_pred HhhhcchHHHHHHHHhCccCCCCHHHHHHHHHHHHHHHccCchhhHH-HHHHHhccccCCCChhhHHHHHHHHHHHHHHH
Q 001381 578 AQYEGYLYPFVDELLYNKICHWDKVLRELAAEALSALVKYDPEYFAN-FILEKLTPFTLSTDLCTRHGATLAAGEVVLAL 656 (1089)
Q Consensus 578 a~~~~Y~~~li~~Ll~~~l~h~D~~iR~laa~aL~~L~~~~~~~~~~-~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~l 656 (1089)
++.+.+-|. +.+.|-++.+|+.++-+..++-..+++.+.+ -.++.|-+.+.+.+..+--.++-++.++...-
T Consensus 119 ------~ey~~~Pl~-~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~ 191 (734)
T KOG1061|consen 119 ------TEYLCDPLL-KCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESH 191 (734)
T ss_pred ------HHHHHHHHH-HhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhC
Confidence 222344444 3677999999999999999999888775543 24445545555677777777777788876542
Q ss_pred hcccccCChhHHHHHHhhhHHHHhhhhccCcchHHHHHHHHHHHHHhhhcCCCCchhhHHHHHHHHHHhcCCCcHHHHHH
Q 001381 657 CKYDYALPADKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLPEKTKRSLLDTLNENLRHPNSQIQNA 736 (1089)
Q Consensus 657 ~~~~~~~~~~~~~~i~~i~~~~~~~~l~r~~~gelir~a~~~lI~~ls~~~lp~~~~~~~~~~~~L~~~L~~~~~~V~~a 736 (1089)
.+.. ...-....+...+..+.+-. |. +-+..+.+++. ..|-...-.....+.+.-.|.|.++.|..+
T Consensus 192 ~~~~--~~~l~~~~~~~lL~al~ec~-------EW---~qi~IL~~l~~-y~p~d~~ea~~i~~r~~p~Lqh~n~avvls 258 (734)
T KOG1061|consen 192 PSVN--LLELNPQLINKLLEALNECT-------EW---GQIFILDCLAE-YVPKDSREAEDICERLTPRLQHANSAVVLS 258 (734)
T ss_pred CCCC--cccccHHHHHHHHHHHHHhh-------hh---hHHHHHHHHHh-cCCCCchhHHHHHHHhhhhhccCCcceEee
Confidence 2100 00011111122222221100 00 11111222332 233322122344455666678888888888
Q ss_pred HHHHHHHHHH
Q 001381 737 AVKALKPFVQ 746 (1089)
Q Consensus 737 Aa~Al~~l~~ 746 (1089)
+.+.+-.+..
T Consensus 259 avKv~l~~~~ 268 (734)
T KOG1061|consen 259 AVKVILQLVK 268 (734)
T ss_pred hHHHHHHHHH
Confidence 8877765544
No 56
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.69 E-value=6.9 Score=48.28 Aligned_cols=66 Identities=15% Similarity=0.146 Sum_probs=49.8
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCcc--hh---hhhHHHHHHHhCCCChhhhhhHHHHhhccc
Q 001381 722 LNENLRHPNSQIQNAAVKALKPFVQTYMVAADSG--VV---GGISLKYMEQLTDPNPAIRRGSALALGVLP 787 (1089)
Q Consensus 722 L~~~L~~~~~~V~~aAa~Al~~l~~~y~~~~~~~--~~---~~~v~~~~~~L~s~~~~~r~G~a~aLG~lp 787 (1089)
.-+.+++..++||.+|.+.+.-+.+.+....+.+ .. +..+.+.++.+.+.....|--+|.+||.+-
T Consensus 239 A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~ 309 (823)
T KOG2259|consen 239 AVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFE 309 (823)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHH
Confidence 4455799999999999999987777663221111 11 677778888888888888999999999985
No 57
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=94.67 E-value=1 Score=48.71 Aligned_cols=135 Identities=18% Similarity=0.124 Sum_probs=87.9
Q ss_pred hhhhhhhhHHHHHhhhccCccchhHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHhcccCCCCCCccceecccccchh
Q 001381 485 SHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAAAAAFQENVGRQGNYPHGIDIVNTADYFSLS 564 (1089)
Q Consensus 485 ~~VRDAacfi~WslaR~~~~~~l~~~~~~l~~~Ll~~alfD~e~~iRRaAsAAlQE~vGR~g~~p~GI~il~~~d~~~v~ 564 (1089)
+.|-=.||-++=.+++..... +.|++..+++.|+ .-+-|..-.||.+|..++..++-..+
T Consensus 67 s~v~~~A~~~l~~l~~~l~~~-~~~~~~~~l~~Ll-~~~~~~~~~i~~~a~~~L~~i~~~~~------------------ 126 (228)
T PF12348_consen 67 SKVSKTACQLLSDLARQLGSH-FEPYADILLPPLL-KKLGDSKKFIREAANNALDAIIESCS------------------ 126 (228)
T ss_dssp --HHHHHHHHHHHHHHHHGGG-GHHHHHHHHHHHH-HGGG---HHHHHHHHHHHHHHHTTS-------------------
T ss_pred HHHHHHHHHHHHHHHHHHhHh-HHHHHHHHHHHHH-HHHccccHHHHHHHHHHHHHHHHHCC------------------
Confidence 335556777777777777754 8899888888765 77778888999999999988765443
Q ss_pred hhHHHHHHHHHHHHhhhcchHHHHHHHHhCccCCCCHHHHHHHHHHHHHHHccCc---hhh-----HHHHHHHhccccCC
Q 001381 565 SRVYSYLHVAVFIAQYEGYLYPFVDELLYNKICHWDKVLRELAAEALSALVKYDP---EYF-----ANFILEKLTPFTLS 636 (1089)
Q Consensus 565 ~r~~a~~~va~~va~~~~Y~~~li~~Ll~~~l~h~D~~iR~laa~aL~~L~~~~~---~~~-----~~~vlp~Ll~~l~~ 636 (1089)
|...++..++.....|.++.+|..+++.+..+....+ ..+ .+.+.+.+...+.+
T Consensus 127 ------------------~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D 188 (228)
T PF12348_consen 127 ------------------YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSD 188 (228)
T ss_dssp ------------------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTS
T ss_pred ------------------cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCC
Confidence 1112322233336678999999999999998887766 222 35577777788888
Q ss_pred CChhhHHHHHHHHHHHHHHHh
Q 001381 637 TDLCTRHGATLAAGEVVLALC 657 (1089)
Q Consensus 637 ~d~~~RHG~lLalaevl~~l~ 657 (1089)
.+..+|.-+--++..+...++
T Consensus 189 ~~~~VR~~Ar~~~~~l~~~~~ 209 (228)
T PF12348_consen 189 ADPEVREAARECLWALYSHFP 209 (228)
T ss_dssp S-HHHHHHHHHHHHHHHHHH-
T ss_pred CCHHHHHHHHHHHHHHHHHCC
Confidence 899999877777766665554
No 58
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=94.06 E-value=0.077 Score=50.47 Aligned_cols=106 Identities=18% Similarity=0.144 Sum_probs=75.7
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHHHhhhC---cchhh-hHHHHHHhhcCCCCCCcchHHHHHHHHHHHhcCCCCCCc
Q 001381 385 IIEILLSGLRDTDTVVRWSAAKGIGRITSCLT---SSLSE-EVFSSVLELFSPGEGDGSWHGGCLALAELARRGLLLPSS 460 (1089)
Q Consensus 385 iI~~ll~~L~d~dt~vR~saAK~l~rI~~~L~---~~~a~-~vi~~il~~l~~~~~~~~wHg~~LaLael~~~~ll~p~~ 460 (1089)
+|+.++..|.+.+..+|+.++.+++.++..-| ..+.+ .+++.+++.+++. ++.....++-+|+.++...-..+..
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~v~~~a~~~L~~l~~~~~~~~~~ 86 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE-DEEVVKAALWALRNLAAGPEDNKLI 86 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC-CHHHHHHHHHHHHHHccCcHHHHHH
Confidence 78888888899999999999999999997633 23333 7888888888764 3333445788888888765211111
Q ss_pred -c-cchHHHHHHhhhhhccccccCCChhhhhhhhHHHHHhh
Q 001381 461 -L-PKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFG 499 (1089)
Q Consensus 461 -l-~~il~~i~~~L~f~~r~~~~svG~~VRDAacfi~Wsla 499 (1089)
. ..+++.+.+.+.... ..+|..+|+++|.++
T Consensus 87 ~~~~g~l~~l~~~l~~~~--------~~~~~~a~~~l~~l~ 119 (120)
T cd00020 87 VLEAGGVPKLVNLLDSSN--------EDIQKNATGALSNLA 119 (120)
T ss_pred HHHCCChHHHHHHHhcCC--------HHHHHHHHHHHHHhh
Confidence 1 336788877775442 568999999988774
No 59
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=94.01 E-value=0.54 Score=44.73 Aligned_cols=95 Identities=22% Similarity=0.323 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHhhhccccccccccCCcchhhhhhhhHHHHHHHHHHhcccCCCCCCCCcchHHHHHHHHHHHHHHHHh
Q 001381 819 ARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEICTYIL 898 (1089)
Q Consensus 819 ~R~~al~sL~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~L~DYT~D~RGDVGSwVR~aa~~~l~~l~~ll 898 (1089)
.|..++.+|+.+...+|.. ...+++.|++.++.|++|- =+-||.+|.+++-.+....
T Consensus 2 ~R~ggli~Laa~ai~l~~~---------------~~~~l~~Il~pVL~~~~D~--------d~rVRy~AcEaL~ni~k~~ 58 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKD---------------ISKYLDEILPPVLKCFDDQ--------DSRVRYYACEALYNISKVA 58 (97)
T ss_pred chhHHHHHHHHHHHHchHh---------------HHHHHHHHHHHHHHHcCCC--------cHHHHHHHHHHHHHHHHHH
Confidence 4888999999887665531 2478899999999999885 3559999999998875322
Q ss_pred hccCCCCCCCCCccccccCCCCccccccccCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhh
Q 001381 899 CKRDFVPSPEKPQEVKSELPGNVTAEKTLFDANLATNLVAGIVKQAVEKMDKLREAAAKVLRRILY 964 (1089)
Q Consensus 899 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~llrq~~EkiD~vR~~A~~~L~~l~~ 964 (1089)
. ...+ ....+++..|.|++.+.=.+||..| +.|-++++
T Consensus 59 ~-------------------------~~~l--~~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~llk 96 (97)
T PF12755_consen 59 R-------------------------GEIL--PYFNEIFDALCKLSADPDENVRSAA-ELLDRLLK 96 (97)
T ss_pred H-------------------------HHHH--HHHHHHHHHHHHHHcCCchhHHHHH-HHHHHHhc
Confidence 1 1112 3578899999999999999999988 55555543
No 60
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.87 E-value=2.9 Score=51.82 Aligned_cols=240 Identities=15% Similarity=0.172 Sum_probs=133.1
Q ss_pred hhHHHHHHHHHHHHhhhcchHHHHHHHHhCccCCCCHHHHHHHHHHHHHHHccCchhhHHHHHHHhccccC--CCChhhH
Q 001381 565 SRVYSYLHVAVFIAQYEGYLYPFVDELLYNKICHWDKVLRELAAEALSALVKYDPEYFANFILEKLTPFTL--STDLCTR 642 (1089)
Q Consensus 565 ~r~~a~~~va~~va~~~~Y~~~li~~Ll~~~l~h~D~~iR~laa~aL~~L~~~~~~~~~~~vlp~Ll~~l~--~~d~~~R 642 (1089)
.|++|.+.+-...-+||+-..+-++-|.. +|.+.|+.+.-.|-.-+++|++.+|..+.. .-|.+.+.+. +.+|.
T Consensus 160 vRKkAIl~lykvFLkYPeAlr~~FprL~E-kLeDpDp~V~SAAV~VICELArKnPknyL~-LAP~ffkllttSsNNWm-- 235 (877)
T KOG1059|consen 160 VRKKAILLLYKVFLKYPEALRPCFPRLVE-KLEDPDPSVVSAAVSVICELARKNPQNYLQ-LAPLFYKLLVTSSNNWV-- 235 (877)
T ss_pred HHHHHHHHHHHHHHhhhHhHhhhHHHHHH-hccCCCchHHHHHHHHHHHHHhhCCccccc-ccHHHHHHHhccCCCee--
Confidence 35566555555566888888888998886 899999999999999999999999976553 2344444443 33443
Q ss_pred HHHHHHHHHHHHHHhcccccCChhHHHHHHhhhHHHHhhhhccCcchHHHHHHHHHHHHH-hhhcCCCCchhhHHHHHHH
Q 001381 643 HGATLAAGEVVLALCKYDYALPADKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIEC-ISLSFVSLPEKTKRSLLDT 721 (1089)
Q Consensus 643 HG~lLalaevl~~l~~~~~~~~~~~~~~i~~i~~~~~~~~l~r~~~gelir~a~~~lI~~-ls~~~lp~~~~~~~~~~~~ 721 (1089)
+.-+=++..+|..+.-..+....+-+.++....-. -.++.+.+-..|.. ++ ++.|-+.+.+.--..-
T Consensus 236 ---LIKiiKLF~aLtplEPRLgKKLieplt~li~sT~A--------mSLlYECvNTVVa~s~s-~g~~d~~asiqLCvqK 303 (877)
T KOG1059|consen 236 ---LIKLLKLFAALTPLEPRLGKKLIEPITELMESTVA--------MSLLYECVNTVVAVSMS-SGMSDHSASIQLCVQK 303 (877)
T ss_pred ---hHHHHHHHhhccccCchhhhhhhhHHHHHHHhhHH--------HHHHHHHHHHheeehhc-cCCCCcHHHHHHHHHH
Confidence 33344444444433222233344444333333211 11333333332221 11 2334444322222222
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCcchhhhhHHHHHHHhCCCChhhhhhHHHHhhccchHhhhhhHHHHHHH
Q 001381 722 LNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLTDPNPAIRRGSALALGVLPYELLANSWRDVLLK 801 (1089)
Q Consensus 722 L~~~L~~~~~~V~~aAa~Al~~l~~~y~~~~~~~~~~~~v~~~~~~L~s~~~~~r~G~a~aLG~lp~~~~~~~~~~i~~~ 801 (1089)
|...+.+.+++..+-+.-|++.+...- ...+...-+-.++-|.+.++..|-- ||--+...+....+.+|+..
T Consensus 304 Lr~fiedsDqNLKYlgLlam~KI~ktH-----p~~Vqa~kdlIlrcL~DkD~SIRlr---ALdLl~gmVskkNl~eIVk~ 375 (877)
T KOG1059|consen 304 LRIFIEDSDQNLKYLGLLAMSKILKTH-----PKAVQAHKDLILRCLDDKDESIRLR---ALDLLYGMVSKKNLMEIVKT 375 (877)
T ss_pred HhhhhhcCCccHHHHHHHHHHHHhhhC-----HHHHHHhHHHHHHHhccCCchhHHH---HHHHHHHHhhhhhHHHHHHH
Confidence 444456778888888888887776542 1112222233344455666666653 33223333344566777777
Q ss_pred HhhhccccCCCCCCCHHHHHHHHHHHHHHHhh
Q 001381 802 LCSCCLIEENPEDRDTEARVNAVRGLVSVCET 833 (1089)
Q Consensus 802 L~~~~~~~~~~~~~d~e~R~~al~sL~~i~~~ 833 (1089)
|..-....+ ...-|-..+..+..+|+.
T Consensus 376 LM~~~~~ae-----~t~yrdell~~II~iCS~ 402 (877)
T KOG1059|consen 376 LMKHVEKAE-----GTNYRDELLTRIISICSQ 402 (877)
T ss_pred HHHHHHhcc-----chhHHHHHHHHHHHHhhh
Confidence 766543222 246777778888888754
No 61
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=93.82 E-value=3.5 Score=43.34 Aligned_cols=133 Identities=17% Similarity=0.155 Sum_probs=84.7
Q ss_pred cHHHHHHHHHHHHHHHHHhhhccCcchhhhhHHHHHHHhCCCChhhhhhHHHHhhccchHhhhhhHHHHHHHHhhhcccc
Q 001381 730 NSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLTDPNPAIRRGSALALGVLPYELLANSWRDVLLKLCSCCLIE 809 (1089)
Q Consensus 730 ~~~V~~aAa~Al~~l~~~y~~~~~~~~~~~~v~~~~~~L~s~~~~~r~G~a~aLG~lp~~~~~~~~~~i~~~L~~~~~~~ 809 (1089)
++.||..+.-++..+...|- ...+..++.+.+.|++.++..|+.+...|..+...-.-..-..++..+..++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~-----~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l--- 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYP-----NLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLL--- 72 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCc-----HHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHH---
Confidence 36788899999999988772 2346777778888899999999998888877753211111112223333333
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhhhccccccccccCCcchhhhhhhhHHHHHHHHHHhcccCCCCCCC-CcchHHHHHHH
Q 001381 810 ENPEDRDTEARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRG-DVGSWVREAAV 888 (1089)
Q Consensus 810 ~~~~~~d~e~R~~al~sL~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~L~DYT~D~RG-DVGSwVR~aa~ 888 (1089)
.+.+.+.|..|...|.++....+. +.+...+..++..|++|+.+... .++.--|..-+
T Consensus 73 ---~D~~~~Ir~~A~~~~~e~~~~~~~------------------~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~ 131 (178)
T PF12717_consen 73 ---VDENPEIRSLARSFFSELLKKRNP------------------NIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIY 131 (178)
T ss_pred ---cCCCHHHHHHHHHHHHHHHHhccc------------------hHHHHHHHHHHHHHhCccccccccccCHHHHHHHH
Confidence 456889999999999998754221 23344555556667777554322 45555555555
Q ss_pred HHH
Q 001381 889 DGL 891 (1089)
Q Consensus 889 ~~l 891 (1089)
+-+
T Consensus 132 ~fl 134 (178)
T PF12717_consen 132 KFL 134 (178)
T ss_pred HHH
Confidence 444
No 62
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=93.75 E-value=1.2 Score=56.31 Aligned_cols=147 Identities=16% Similarity=0.139 Sum_probs=105.0
Q ss_pred hhhHHHHHHHhC----CCChhhhhhHHHHhhccchHhhhhhHHHHHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHhh
Q 001381 758 GGISLKYMEQLT----DPNPAIRRGSALALGVLPYELLANSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCET 833 (1089)
Q Consensus 758 ~~~v~~~~~~L~----s~~~~~r~G~a~aLG~lp~~~~~~~~~~i~~~L~~~~~~~~~~~~~d~e~R~~al~sL~~i~~~ 833 (1089)
..+++.+...++ +....--.+-+..|+..|+...-+.+..++..|+.++ +..|++.|+.++..|......
T Consensus 866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~L------s~~D~~v~vstl~~i~~~l~~ 939 (1030)
T KOG1967|consen 866 CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQAL------SMPDVIVRVSTLRTIPMLLTE 939 (1030)
T ss_pred HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhc------CCCccchhhhHhhhhhHHHHh
Confidence 355666666664 3344445667788888899998899999999999986 567899999999999876654
Q ss_pred hccccccccccCCcchhhhhhhhHHHHHHHHHHhc--ccCCCCCCCCcchHHHHHHHHHHHHHHHHhhccCCCCCCCCCc
Q 001381 834 LTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKAL--DDYSVDNRGDVGSWVREAAVDGLEICTYILCKRDFVPSPEKPQ 911 (1089)
Q Consensus 834 ~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~L--~DYT~D~RGDVGSwVR~aa~~~l~~l~~ll~~~~~~~~~~~~~ 911 (1089)
.+ .+....++.+++.++.-= +||. ---||+.|++++..++..+
T Consensus 940 ~~---------------tL~t~~~~Tlvp~lLsls~~~~n~-------~~~VR~~ALqcL~aL~~~~------------- 984 (1030)
T KOG1967|consen 940 SE---------------TLQTEHLSTLVPYLLSLSSDNDNN-------MMVVREDALQCLNALTRRL------------- 984 (1030)
T ss_pred cc---------------ccchHHHhHHHHHHHhcCCCCCcc-------hhHHHHHHHHHHHHHhccC-------------
Confidence 33 233456788888887554 4552 1239999999998875211
Q ss_pred cccccCCCCccccccccCHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001381 912 EVKSELPGNVTAEKTLFDANLATNLVAGIVKQAVEKMDKLREAAAKV 958 (1089)
Q Consensus 912 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~llrq~~EkiD~vR~~A~~~ 958 (1089)
+...+ -.+..+++.+|.+-...|=-.||..|-.+
T Consensus 985 ------------P~~~l-~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 985 ------------PTKSL-LSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred ------------CCccc-ccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 11111 23456778899999999999999999765
No 63
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.68 E-value=23 Score=44.40 Aligned_cols=268 Identities=16% Similarity=0.107 Sum_probs=155.0
Q ss_pred HHHHHHHHHHHHHccCchhhHHHHHHHhccccCCCChhhHHHHHHHHHHHHHHHhcccccCChhHHHHHHhhhHHHHhhh
Q 001381 603 LRELAAEALSALVKYDPEYFANFILEKLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPADKQKIVAGIVPGIEKAR 682 (1089)
Q Consensus 603 iR~laa~aL~~L~~~~~~~~~~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~l~~~~~~~~~~~~~~i~~i~~~~~~~~ 682 (1089)
++++.++..-..+...-+.-...++..++.-.+......| .+-.++..+..+++. +..++. +.+++..+
T Consensus 22 ~~kl~~k~~em~t~~~F~eeflr~vn~il~vkKresi~dR--Il~fla~fv~sl~q~--d~e~Dl---V~~~f~hl---- 90 (892)
T KOG2025|consen 22 YSKLLAKVMEMLTAHEFSEEFLRVVNYILLVKKRESIPDR--ILSFLARFVESLPQL--DKEEDL---VAGTFYHL---- 90 (892)
T ss_pred HHHHHHHHHHhhhHhhhHHHHHHHHHHheeeccCCCcHHH--HHHHHHHHHHhhhcc--CchhhH---HHHHHHHH----
Confidence 6777777776666544333333455544433333333333 344566666666642 222222 22333333
Q ss_pred hccCcc--hHHHHHHHHHHHHHhhhcCCCCchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCcchhhhh
Q 001381 683 LYRGKG--GEIMRSAVSRFIECISLSFVSLPEKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGI 760 (1089)
Q Consensus 683 l~r~~~--gelir~a~~~lI~~ls~~~lp~~~~~~~~~~~~L~~~L~~~~~~V~~aAa~Al~~l~~~y~~~~~~~~~~~~ 760 (1089)
.||.. ..-+|--+|.+|..+......+++++...+...+..-+.+..+.||..|+-|++.+.. .+++..-.+
T Consensus 91 -LRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~-----d~~dee~~v 164 (892)
T KOG2025|consen 91 -LRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQG-----DPKDEECPV 164 (892)
T ss_pred -HhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhc-----CCCCCcccH
Confidence 24422 3358889999999888654455566777777777777899999999999988865543 344444677
Q ss_pred HHHHHHHhC-CCChhhhhhHHHHhhccchHhhhhhHHHHHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHhhhccccc
Q 001381 761 SLKYMEQLT-DPNPAIRRGSALALGVLPYELLANSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQSQE 839 (1089)
Q Consensus 761 v~~~~~~L~-s~~~~~r~G~a~aLG~lp~~~~~~~~~~i~~~L~~~~~~~~~~~~~d~e~R~~al~sL~~i~~~~g~~~~ 839 (1089)
+..|...++ ++++-+||.+-..+..=++ ....|+ .-+ -+.+...|+-+..-+..-+.
T Consensus 165 ~n~l~~liqnDpS~EVRRaaLsnI~vdns-----Tlp~Iv----eRa------rDV~~anRrlvY~r~lpkid------- 222 (892)
T KOG2025|consen 165 VNLLKDLIQNDPSDEVRRAALSNISVDNS-----TLPCIV----ERA------RDVSGANRRLVYERCLPKID------- 222 (892)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHhhccCcc-----cchhHH----HHh------hhhhHHHHHHHHHHhhhhhh-------
Confidence 778888886 7788888844333321111 111122 221 12344556655553322111
Q ss_pred cccccCCcchhhhhhhhHHHHHHHHHHhcccCCCCCCCCcchHHHHHHHHHHHHHHHHhhccCCCCCCCCCccccccCCC
Q 001381 840 NSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEICTYILCKRDFVPSPEKPQEVKSELPG 919 (1089)
Q Consensus 840 ~~~~~~~~~~~~~~~~~~~~i~~~Ll~~L~DYT~D~RGDVGSwVR~aa~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~ 919 (1089)
++....++.+..+-.||+|-.-+ ||.|+.++|..=|.-..
T Consensus 223 ------------~r~lsi~krv~LlewgLnDRe~s--------Vk~A~~d~il~~Wl~~~-------------------- 262 (892)
T KOG2025|consen 223 ------------LRSLSIDKRVLLLEWGLNDREFS--------VKGALVDAILSGWLRFS-------------------- 262 (892)
T ss_pred ------------hhhhhHHHHHHHHHHhhhhhhhH--------HHHHHHHHHHHHHhhhc--------------------
Confidence 12233456777888999996544 77777777754331110
Q ss_pred CccccccccCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 001381 920 NVTAEKTLFDANLATNLVAGIVKQAVEKMDKLREAAAKVLRRI 962 (1089)
Q Consensus 920 ~~~~~~~~~~~~~~~~l~~~llrq~~EkiD~vR~~A~~~L~~l 962 (1089)
-..++.-|=|+-++.-++|+.+|.+.|...
T Consensus 263 -------------dgni~ElL~~ldvsnss~vavk~lealf~~ 292 (892)
T KOG2025|consen 263 -------------DGNILELLERLDVSNSSEVAVKALEALFSG 292 (892)
T ss_pred -------------cccHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 012344556677888889999998888874
No 64
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.66 E-value=14 Score=46.49 Aligned_cols=124 Identities=19% Similarity=0.162 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHhhhcCCCCchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCcchhhhhHHHHHHHhCCC
Q 001381 692 MRSAVSRFIECISLSFVSLPEKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLTDP 771 (1089)
Q Consensus 692 ir~a~~~lI~~ls~~~lp~~~~~~~~~~~~L~~~L~~~~~~V~~aAa~Al~~l~~~y~~~~~~~~~~~~v~~~~~~L~s~ 771 (1089)
+..++..-|+.|+.....+.+..+.. |..-|+..++-|-.+|+-.++.+.+. +...+.+++.++.+.+.+.
T Consensus 408 faa~aV~AiGrCA~~~~sv~~tCL~g----Lv~Llsshde~Vv~eaV~vIk~Llq~-----~p~~h~~ii~~La~lldti 478 (968)
T KOG1060|consen 408 FAAAAVKAIGRCASRIGSVTDTCLNG----LVQLLSSHDELVVAEAVVVIKRLLQK-----DPAEHLEILFQLARLLDTI 478 (968)
T ss_pred HHHHHHHHHHHHHHhhCchhhHHHHH----HHHHHhcccchhHHHHHHHHHHHHhh-----ChHHHHHHHHHHHHHhhhh
Confidence 44556666777776544443333333 33334666888888888888777663 2334467899999888755
Q ss_pred C-hhhhhhHHHHhhccchHhhhhhHHHHHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHH
Q 001381 772 N-PAIRRGSALALGVLPYELLANSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVC 831 (1089)
Q Consensus 772 ~-~~~r~G~a~aLG~lp~~~~~~~~~~i~~~L~~~~~~~~~~~~~d~e~R~~al~sL~~i~ 831 (1089)
. +.+|.|..-.+|.......+ -...++..+...+ .....++|-.++.--+++.
T Consensus 479 ~vp~ARA~IiWLige~~e~vpr-i~PDVLR~laksF------s~E~~evKlQILnL~aKLy 532 (968)
T KOG1060|consen 479 LVPAARAGIIWLIGEYCEIVPR-IAPDVLRKLAKSF------SDEGDEVKLQILNLSAKLY 532 (968)
T ss_pred hhhhhhceeeeeehhhhhhcch-hchHHHHHHHHhh------ccccchhhHHHHHhhhhhe
Confidence 4 44555444444443322111 0123444444433 2334577777766555543
No 65
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=93.54 E-value=7.5 Score=44.68 Aligned_cols=189 Identities=24% Similarity=0.185 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHhcCCCchhhHHHHHHHHHHhcccCCCCCCccceecccccchhhhHHHHHHHHHHHHhhhcchHHHHHH
Q 001381 511 LEQIAPHLLTVACYDREVNCRRAAAAAFQENVGRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDE 590 (1089)
Q Consensus 511 ~~~l~~~Ll~~alfD~e~~iRRaAsAAlQE~vGR~g~~p~GI~il~~~d~~~v~~r~~a~~~va~~va~~~~Y~~~li~~ 590 (1089)
-..-+...+...+-|.+..+|+.|.-| +|..|.- +..++++..
T Consensus 71 ~~~~av~~l~~~l~d~~~~vr~~a~~a----Lg~~~~~---------------------------------~a~~~li~~ 113 (335)
T COG1413 71 GSEEAVPLLRELLSDEDPRVRDAAADA----LGELGDP---------------------------------EAVPPLVEL 113 (335)
T ss_pred chHHHHHHHHHHhcCCCHHHHHHHHHH----HHccCCh---------------------------------hHHHHHHHH
Confidence 334455667788888888888888776 4665541 223445544
Q ss_pred HHhCccCCCCHHHHHHHHHHHHHHHccCchhhHHHHHHHhccccCCCC------------hhhHHHHHHHHHHHHHHHhc
Q 001381 591 LLYNKICHWDKVLRELAAEALSALVKYDPEYFANFILEKLTPFTLSTD------------LCTRHGATLAAGEVVLALCK 658 (1089)
Q Consensus 591 Ll~~~l~h~D~~iR~laa~aL~~L~~~~~~~~~~~vlp~Ll~~l~~~d------------~~~RHG~lLalaevl~~l~~ 658 (1089)
|-. |.|..+|.-++.+|+++-.... ++.+++.+.+.. +..|..+.-+++.+-.
T Consensus 114 l~~----d~~~~vR~~aa~aL~~~~~~~a-------~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~---- 178 (335)
T COG1413 114 LEN----DENEGVRAAAARALGKLGDERA-------LDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGD---- 178 (335)
T ss_pred HHc----CCcHhHHHHHHHHHHhcCchhh-------hHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCC----
Confidence 432 8999999999999999976442 333333333322 2345555544444321
Q ss_pred ccccCChhHHHHHHhhhHHHHhhhhccCcchHHHHHHHHHHHHHhhhcCCCCchhhHHHHHHHHHHhcCCCcHHHHHHHH
Q 001381 659 YDYALPADKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLPEKTKRSLLDTLNENLRHPNSQIQNAAV 738 (1089)
Q Consensus 659 ~~~~~~~~~~~~i~~i~~~~~~~~l~r~~~gelir~a~~~lI~~ls~~~lp~~~~~~~~~~~~L~~~L~~~~~~V~~aAa 738 (1089)
+.... .+.+.+.+. -..+|.++..-+..+.... ......+...+.+++..++.+++
T Consensus 179 ------~~~~~---~l~~~l~~~-------~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~~~~~~~vr~~~~ 234 (335)
T COG1413 179 ------PEAIP---LLIELLEDE-------DADVRRAAASALGQLGSEN--------VEAADLLVKALSDESLEVRKAAL 234 (335)
T ss_pred ------hhhhH---HHHHHHhCc-------hHHHHHHHHHHHHHhhcch--------hhHHHHHHHHhcCCCHHHHHHHH
Confidence 11111 111111110 1145555444444333211 12223344455788888888887
Q ss_pred HHHHHHHHHhhhccCcchhhhhHHHHHHHhCCCChhhhhhHHHHhhcc
Q 001381 739 KALKPFVQTYMVAADSGVVGGISLKYMEQLTDPNPAIRRGSALALGVL 786 (1089)
Q Consensus 739 ~Al~~l~~~y~~~~~~~~~~~~v~~~~~~L~s~~~~~r~G~a~aLG~l 786 (1089)
.++...- ..+.+..++..+.+.+...+..++.+++..
T Consensus 235 ~~l~~~~-----------~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 271 (335)
T COG1413 235 LALGEIG-----------DEEAVDALAKALEDEDVILALLAAAALGAL 271 (335)
T ss_pred HHhcccC-----------cchhHHHHHHHHhccchHHHHHHHHHhccc
Confidence 7775331 245666777777777777777777776633
No 66
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=93.50 E-value=6.2 Score=47.79 Aligned_cols=173 Identities=17% Similarity=0.240 Sum_probs=104.5
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCcchhhhhHHHHHHH-hCCCChhhhhhHHHHhhccchHhhhhhHHHH
Q 001381 720 DTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQ-LTDPNPAIRRGSALALGVLPYELLANSWRDV 798 (1089)
Q Consensus 720 ~~L~~~L~~~~~~V~~aAa~Al~~l~~~y~~~~~~~~~~~~v~~~~~~-L~s~~~~~r~G~a~aLG~lp~~~~~~~~~~i 798 (1089)
+.|.+.+.+.++..|...+=++ -..|..+. ...++..+++. +.+.|-.+||++..|||-+...- ...+..+
T Consensus 519 d~I~ell~d~ds~lRy~G~fs~---alAy~GTg----n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D-~~~lv~t 590 (926)
T COG5116 519 DYINELLYDKDSILRYNGVFSL---ALAYVGTG----NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDD-RDLLVGT 590 (926)
T ss_pred HHHHHHhcCchHHhhhccHHHH---HHHHhcCC----cchhHhhhheeecccCchHHHHHHHHheeeeEecC-cchhhHH
Confidence 3455666777777776543322 23343332 25677777776 57788888999999988764221 1123334
Q ss_pred HHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHhhhccccccccccCCcchhhhhhhhHHHHHHHHHHhcccCCCCCCCC
Q 001381 799 LLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGD 878 (1089)
Q Consensus 799 ~~~L~~~~~~~~~~~~~d~e~R~~al~sL~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~L~DYT~D~RGD 878 (1089)
++.|.+ .-....|....-+|+-.|..-|. +.-..+++.|.. |
T Consensus 591 velLs~---------shN~hVR~g~AvaLGiacag~G~------------------~~a~diL~~L~~-----------D 632 (926)
T COG5116 591 VELLSE---------SHNFHVRAGVAVALGIACAGTGD------------------KVATDILEALMY-----------D 632 (926)
T ss_pred HHHhhh---------ccchhhhhhhHHHhhhhhcCCcc------------------HHHHHHHHHHhh-----------C
Confidence 444422 23466777777777766643332 111233444432 2
Q ss_pred cchHHHHHHHHHHHHHHHHhhccCCCCCCCCCccccccCCCCccccccccCHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001381 879 VGSWVREAAVDGLEICTYILCKRDFVPSPEKPQEVKSELPGNVTAEKTLFDANLATNLVAGIVKQAVEKMDKLREAAAKV 958 (1089)
Q Consensus 879 VGSwVR~aa~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~llrq~~EkiD~vR~~A~~~ 958 (1089)
--++||.+||-|+.-++ . ++++.+. +.+..+..++.|...||=..==.+=|.+
T Consensus 633 ~~dfVRQ~AmIa~~mIl---~----------------------Q~n~~Ln--p~v~~I~k~f~~vI~~Khe~glaklGA~ 685 (926)
T COG5116 633 TNDFVRQSAMIAVGMIL---M----------------------QCNPELN--PNVKRIIKKFNRVIVDKHESGLAKLGAV 685 (926)
T ss_pred cHHHHHHHHHHHHHHHH---h----------------------hcCcccC--hhHHHHHHHHHHHHhhhhHhHHHHHHHH
Confidence 24579999999997653 3 2333332 2477888899999999988777777888
Q ss_pred HHHHhhc
Q 001381 959 LRRILYN 965 (1089)
Q Consensus 959 L~~l~~~ 965 (1089)
+.+-+-.
T Consensus 686 laqGi~~ 692 (926)
T COG5116 686 LAQGISE 692 (926)
T ss_pred HHhhhhh
Confidence 8776543
No 67
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.36 E-value=34 Score=45.20 Aligned_cols=307 Identities=16% Similarity=0.118 Sum_probs=162.3
Q ss_pred CCHHHHHHHHHHHHHHHccC------------chhhHHHHHHHhccccCCCCh------hhHHHHHHHHH-HHHHHHhcc
Q 001381 599 WDKVLRELAAEALSALVKYD------------PEYFANFILEKLTPFTLSTDL------CTRHGATLAAG-EVVLALCKY 659 (1089)
Q Consensus 599 ~D~~iR~laa~aL~~L~~~~------------~~~~~~~vlp~Ll~~l~~~d~------~~RHG~lLala-evl~~l~~~ 659 (1089)
..++.|..-+.||..|...+ ++..+.+.+|++.+..+..-. ..|.-.+..+. ..+..
T Consensus 529 ~~~elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L~~i~~~~~~~---- 604 (1176)
T KOG1248|consen 529 KRPELRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGRKILASRSTVLEIIRVDYFTV---- 604 (1176)
T ss_pred cchHhHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCccccccHHHHHHHHHHHHHHHhhc----
Confidence 34477777777787777664 124456788888876654333 33333333322 21111
Q ss_pred cccCChhHHHHHHhhhHHHHhhhhccCcchHHHHHHHHHHHHHhhhcCCCCchhhHHHHHHHHHHhcCCCcHHHHHHHHH
Q 001381 660 DYALPADKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLPEKTKRSLLDTLNENLRHPNSQIQNAAVK 739 (1089)
Q Consensus 660 ~~~~~~~~~~~i~~i~~~~~~~~l~r~~~gelir~a~~~lI~~ls~~~lp~~~~~~~~~~~~L~~~L~~~~~~V~~aAa~ 739 (1089)
.+.+....+.+-....... ....-...++-+...++-+++... ..+.+..+..+.....++.+..+|..+-.
T Consensus 605 ---t~~dv~~~l~~s~~e~as~--~~~s~~~~~~~slLdl~~~~a~~~---~e~~vs~l~~v~~~~e~~~~~~vQkK~yr 676 (1176)
T KOG1248|consen 605 ---TPTDVVGSLKDSAGELASD--LDESVASFKTLSLLDLLIALAPVQ---TESQVSKLFTVDPEFENSSSTKVQKKAYR 676 (1176)
T ss_pred ---ccHHHHHHHHHHHHhHhcc--chhhhhhHHHHHHHHHHHhhhccc---cchhHHHHHHhhHHhhccccHHHHHHHHH
Confidence 1122222221111111100 000011233334444443333211 12233334444445557778999999988
Q ss_pred HHHHHHHHhhhc-cCcchhhhhHHHHHHHhCCCChhhhhhHHHHhhccchHhhhhhHHHHHHHHhhhccccCCCCCCCHH
Q 001381 740 ALKPFVQTYMVA-ADSGVVGGISLKYMEQLTDPNPAIRRGSALALGVLPYELLANSWRDVLLKLCSCCLIEENPEDRDTE 818 (1089)
Q Consensus 740 Al~~l~~~y~~~-~~~~~~~~~v~~~~~~L~s~~~~~r~G~a~aLG~lp~~~~~~~~~~i~~~L~~~~~~~~~~~~~d~e 818 (1089)
-+..++..-.+. ...+..+.+.+.+.+..++....++.++..+|-.+..........-+...+.+.+.-. ..-+..
T Consensus 677 lL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~---Ke~n~~ 753 (1176)
T KOG1248|consen 677 LLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSL---KEVNVK 753 (1176)
T ss_pred HHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhc---ccccHH
Confidence 888877641000 0011124455555555667777788888888877766554333222222222222211 245788
Q ss_pred HHHHHHHHHHHHH--hhhccccccccccCCcchhhhhhhhHHHHHHHHHHhcccCCCCCCCCcchHHHHHHHHHHHHHHH
Q 001381 819 ARVNAVRGLVSVC--ETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEICTY 896 (1089)
Q Consensus 819 ~R~~al~sL~~i~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~L~DYT~D~RGDVGSwVR~aa~~~l~~l~~ 896 (1089)
+|++|-+.|..++ +..-..+ + ..-...++.++..+..|+ ||.--|..|-. |-.+..
T Consensus 754 aR~~Af~lL~~i~~i~~~~d~g--------~---e~~~~~lnefl~~Isagl----------~gd~~~~~as~-Ivai~~ 811 (1176)
T KOG1248|consen 754 ARRNAFALLVFIGAIQSSLDDG--------N---EPASAILNEFLSIISAGL----------VGDSTRVVASD-IVAITH 811 (1176)
T ss_pred HHhhHHHHHHHHHHHHhhhccc--------c---cchHHHHHHHHHHHHhhh----------cccHHHHHHHH-HHHHHH
Confidence 9999999988876 2211111 1 111246777888887774 45555655554 333333
Q ss_pred HhhccCCCCCCCCCccccccCCCCccccccccCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhc
Q 001381 897 ILCKRDFVPSPEKPQEVKSELPGNVTAEKTLFDANLATNLVAGIVKQAVEKMDKLREAAAKVLRRILYN 965 (1089)
Q Consensus 897 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~llrq~~EkiD~vR~~A~~~L~~l~~~ 965 (1089)
++. .....++.+.+..++.-+.--.+++--.+|..|-..+..+.+.
T Consensus 812 il~-----------------------e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~ 857 (1176)
T KOG1248|consen 812 ILQ-----------------------EFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYK 857 (1176)
T ss_pred HHH-----------------------HHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHc
Confidence 333 2335667777788877777777888889999998877777554
No 68
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=93.23 E-value=5.4 Score=47.65 Aligned_cols=151 Identities=16% Similarity=0.040 Sum_probs=91.4
Q ss_pred HHHHHHhCcc-CCCCHHHHHHHHHHHHHHHccCchhhHHHHHHHhccccCCCChhhHHHHHHHHHHHHHHHhcccccCCh
Q 001381 587 FVDELLYNKI-CHWDKVLRELAAEALSALVKYDPEYFANFILEKLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPA 665 (1089)
Q Consensus 587 li~~Ll~~~l-~h~D~~iR~laa~aL~~L~~~~~~~~~~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~l~~~~~~~~~ 665 (1089)
.+++|+. -+ .+.|.+++..++.++.... .+ .++..+++.+.+.+..+|.++.-+|+++-. +
T Consensus 55 a~~~L~~-aL~~d~~~ev~~~aa~al~~~~--~~-----~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~----------~ 116 (410)
T TIGR02270 55 ATELLVS-ALAEADEPGRVACAALALLAQE--DA-----LDLRSVLAVLQAGPEGLCAGIQAALGWLGG----------R 116 (410)
T ss_pred HHHHHHH-HHhhCCChhHHHHHHHHHhccC--Ch-----HHHHHHHHHhcCCCHHHHHHHHHHHhcCCc----------h
Confidence 3444443 33 3677888888777775432 21 136777888888888899999988887632 2
Q ss_pred hHHHHHHhhhHHHHhhhhccCcchHHHHHHHHHHHHHhhhcCCCCchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 001381 666 DKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLPEKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFV 745 (1089)
Q Consensus 666 ~~~~~i~~i~~~~~~~~l~r~~~gelir~a~~~lI~~ls~~~lp~~~~~~~~~~~~L~~~L~~~~~~V~~aAa~Al~~l~ 745 (1089)
.....+...+. +. -..+|.++....+..- . +.. ..+...|++++..|+.+|+.++..+-
T Consensus 117 ~a~~~L~~~L~---------~~-~p~vR~aal~al~~r~---~----~~~----~~L~~~L~d~d~~Vra~A~raLG~l~ 175 (410)
T TIGR02270 117 QAEPWLEPLLA---------AS-EPPGRAIGLAALGAHR---H----DPG----PALEAALTHEDALVRAAALRALGELP 175 (410)
T ss_pred HHHHHHHHHhc---------CC-ChHHHHHHHHHHHhhc---c----ChH----HHHHHHhcCCCHHHHHHHHHHHHhhc
Confidence 22222222221 11 1234444443333211 0 111 22455568999999999998887653
Q ss_pred HHhhhccCcchhhhhHHHHHHHhCCCChhhhhhHHHHhhccc
Q 001381 746 QTYMVAADSGVVGGISLKYMEQLTDPNPAIRRGSALALGVLP 787 (1089)
Q Consensus 746 ~~y~~~~~~~~~~~~v~~~~~~L~s~~~~~r~G~a~aLG~lp 787 (1089)
. ...++.+...+.+.++.+|++++-+++-+.
T Consensus 176 ~-----------~~a~~~L~~al~d~~~~VR~aA~~al~~lG 206 (410)
T TIGR02270 176 R-----------RLSESTLRLYLRDSDPEVRFAALEAGLLAG 206 (410)
T ss_pred c-----------ccchHHHHHHHcCCCHHHHHHHHHHHHHcC
Confidence 3 244555666678999999999999987664
No 69
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=93.22 E-value=2.5 Score=55.17 Aligned_cols=113 Identities=23% Similarity=0.120 Sum_probs=77.3
Q ss_pred HHHHHhcCCCchhhHHHHHHHHHHhcccCCCCCCccceecccccchhhhHHHHHHHHHHHHhhhcchHHHHHHHH---hC
Q 001381 518 LLTVACYDREVNCRRAAAAAFQENVGRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDELL---YN 594 (1089)
Q Consensus 518 Ll~~alfD~e~~iRRaAsAAlQE~vGR~g~~p~GI~il~~~d~~~v~~r~~a~~~va~~va~~~~Y~~~li~~Ll---~~ 594 (1089)
.++.-+|++.+.||.+|.-|+-|.+-.||.- ++.+. .++--|+.--+..|- ++
T Consensus 81 ~L~~~~~~~~we~rhg~~i~lrei~~~h~~~--------------~~~~~----------led~~~rll~v~~Ldrf~df 136 (1549)
T KOG0392|consen 81 ELVNDLFEPQWEIRHGAAIALREILKTHGDS--------------LSYEL----------LEDLLIRLLCVLALDRFGDF 136 (1549)
T ss_pred HHHHHhcCchhhhhcCcchhhhhHHHHhcch--------------hhHHH----------HHHHHHHHHHHHHHHHhccc
Confidence 3568899999999999999999998888642 11100 000001111111111 11
Q ss_pred ccCCCCHHHHHHHHHHHHHHHccCchhhHHHHHHHhccccCCCChhhHHHHHHHHHHHHH
Q 001381 595 KICHWDKVLRELAAEALSALVKYDPEYFANFILEKLTPFTLSTDLCTRHGATLAAGEVVL 654 (1089)
Q Consensus 595 ~l~h~D~~iR~laa~aL~~L~~~~~~~~~~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~ 654 (1089)
...+--..+|+..|++|+.+....-+.....++..+.+.+...+|++|||.++++..-+.
T Consensus 137 isd~vvapVre~caq~L~~~l~~~~~s~~~~~~~il~q~~~q~~w~ir~Ggll~iky~~a 196 (1549)
T KOG0392|consen 137 ISDNVVAPVREACAQALGAYLKHMDESLIKETLDILLQMLRQPNWEIRHGGLLGIKYNVA 196 (1549)
T ss_pred ccccchhhhHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHcCcchhheechHHHHHHHHH
Confidence 112444589999999999999987777777778888888888899999999999877664
No 70
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=92.71 E-value=0.43 Score=50.52 Aligned_cols=153 Identities=18% Similarity=0.155 Sum_probs=102.1
Q ss_pred hhhhhhHHHHHhhhccCccchhHHHHHHHH-----------HHHHHHhcCCCchhhHHHHHHHHHHhcccCCCCCCccce
Q 001381 487 VRDAAAYVCWAFGRAYCHTDMRNILEQIAP-----------HLLTVACYDREVNCRRAAAAAFQENVGRQGNYPHGIDIV 555 (1089)
Q Consensus 487 VRDAacfi~WslaR~~~~~~l~~~~~~l~~-----------~Ll~~alfD~e~~iRRaAsAAlQE~vGR~g~~p~GI~il 555 (1089)
||=+|.+.+=++++..++..+-.|-..+++ .|+...++|++.-||-+|.+++..++-...
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk--------- 72 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSK--------- 72 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccH---------
Confidence 566777777777777665555554444433 468889999999999999999999875543
Q ss_pred ecccccchh----hhHHHHHHHHHHHHhh-hcchHHHHHHHHhCccCCCCHHHHHHHHHHHHHHHccCch-----hhHHH
Q 001381 556 NTADYFSLS----SRVYSYLHVAVFIAQY-EGYLYPFVDELLYNKICHWDKVLRELAAEALSALVKYDPE-----YFANF 625 (1089)
Q Consensus 556 ~~~d~~~v~----~r~~a~~~va~~va~~-~~Y~~~li~~Ll~~~l~h~D~~iR~laa~aL~~L~~~~~~-----~~~~~ 625 (1089)
.|+..+ .++.+|...+..++.. .+--..++..|.. ..+..+-...-+++..|+...|. .+...
T Consensus 73 ---~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~----E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~ 145 (182)
T PF13251_consen 73 ---PFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQA----EKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTE 145 (182)
T ss_pred ---HHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhc----ccccHHHHHHHHHHHHHHccCChhhcCHhHHHH
Confidence 233221 2445777777776643 2233334433332 34556666777888888876663 34455
Q ss_pred HHHHhccccCCCChhhHHHHHHHHHHHHHH
Q 001381 626 ILEKLTPFTLSTDLCTRHGATLAAGEVVLA 655 (1089)
Q Consensus 626 vlp~Ll~~l~~~d~~~RHG~lLalaevl~~ 655 (1089)
++..+.+.+...|..++.+++.+++.++..
T Consensus 146 ~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 146 VVTQVRPLLRHRDPNVRVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 666666677789999999999999988754
No 71
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=92.63 E-value=4.2 Score=42.75 Aligned_cols=90 Identities=16% Similarity=0.160 Sum_probs=73.3
Q ss_pred hhHHHHHHHHHHHHhhhcchHHHHHHHHhCccCCCCHHHHHHHHHHHHHHHccCchhhHHHHHHHhccccCCCChhhHHH
Q 001381 565 SRVYSYLHVAVFIAQYEGYLYPFVDELLYNKICHWDKVLRELAAEALSALVKYDPEYFANFILEKLTPFTLSTDLCTRHG 644 (1089)
Q Consensus 565 ~r~~a~~~va~~va~~~~Y~~~li~~Ll~~~l~h~D~~iR~laa~aL~~L~~~~~~~~~~~vlp~Ll~~l~~~d~~~RHG 644 (1089)
.|.++...++...-+|+...++.++++.. .|.+.|+.+|+.|...|..|...+.-.+...++..++..+.+.|..+|.-
T Consensus 4 vR~n~i~~l~DL~~r~~~~ve~~~~~l~~-~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~Ir~~ 82 (178)
T PF12717_consen 4 VRNNAIIALGDLCIRYPNLVEPYLPNLYK-CLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPEIRSL 82 (178)
T ss_pred HHHHHHHHHHHHHHhCcHHHHhHHHHHHH-HHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHHHHHH
Confidence 35666666666666777777788888886 78899999999999999999988766666777778888889999999999
Q ss_pred HHHHHHHHHHH
Q 001381 645 ATLAAGEVVLA 655 (1089)
Q Consensus 645 ~lLalaevl~~ 655 (1089)
+..++.++...
T Consensus 83 A~~~~~e~~~~ 93 (178)
T PF12717_consen 83 ARSFFSELLKK 93 (178)
T ss_pred HHHHHHHHHHh
Confidence 88888888754
No 72
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=92.11 E-value=38 Score=43.42 Aligned_cols=121 Identities=15% Similarity=0.125 Sum_probs=85.8
Q ss_pred hhHHHHHhhhccCccchhHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHhcccCCCCCCccceecccccchhhhHHHH
Q 001381 491 AAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAAAAAFQENVGRQGNYPHGIDIVNTADYFSLSSRVYSY 570 (1089)
Q Consensus 491 acfi~WslaR~~~~~~l~~~~~~l~~~Ll~~alfD~e~~iRRaAsAAlQE~vGR~g~~p~GI~il~~~d~~~v~~r~~a~ 570 (1089)
-||.-|-..-.+.| ...-++.+.+..-+.|++.-||-.|...+ |-.+.
T Consensus 74 L~ylYl~~yak~~P-----~~~lLavNti~kDl~d~N~~iR~~AlR~l----s~l~~----------------------- 121 (757)
T COG5096 74 LLYLYLERYAKLKP-----ELALLAVNTIQKDLQDPNEEIRGFALRTL----SLLRV----------------------- 121 (757)
T ss_pred HHHHHHHHHhccCH-----HHHHHHHHHHHhhccCCCHHHHHHHHHHH----HhcCh-----------------------
Confidence 36777766655554 55568899999999999999999988875 22211
Q ss_pred HHHHHHHHhhhcchHHHHHHHHhCccCCCCHHHHHHHHHHHHHHHccCchhhHHH-HHHHhccccCCCChhhHHHHHHHH
Q 001381 571 LHVAVFIAQYEGYLYPFVDELLYNKICHWDKVLRELAAEALSALVKYDPEYFANF-ILEKLTPFTLSTDLCTRHGATLAA 649 (1089)
Q Consensus 571 ~~va~~va~~~~Y~~~li~~Ll~~~l~h~D~~iR~laa~aL~~L~~~~~~~~~~~-vlp~Ll~~l~~~d~~~RHG~lLal 649 (1089)
++.+..+++-+. ..+.|.++.+|+-||-|+.++-+.+++.+.+. ....+...+.+.|....-.++.++
T Consensus 122 ----------~el~~~~~~~ik-~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl 190 (757)
T COG5096 122 ----------KELLGNIIDPIK-KLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLIDILKELVADSDPIVIANALASL 190 (757)
T ss_pred ----------HHHHHHHHHHHH-HHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHHHHHHHHhhCCCchHHHHHHHHH
Confidence 122233444443 37789999999999999999999998877665 444444455567777777777777
Q ss_pred HHHHH
Q 001381 650 GEVVL 654 (1089)
Q Consensus 650 aevl~ 654 (1089)
.++-.
T Consensus 191 ~~i~~ 195 (757)
T COG5096 191 AEIDP 195 (757)
T ss_pred HHhch
Confidence 77643
No 73
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.04 E-value=21 Score=47.05 Aligned_cols=180 Identities=17% Similarity=0.153 Sum_probs=116.4
Q ss_pred HHHHHHHHhCccCCCCHHHHHHHHHHHHHHHccCchhhHHHHHHHhccccC-CCChhhHHHHHHHHHHHHHHHhcccccC
Q 001381 585 YPFVDELLYNKICHWDKVLRELAAEALSALVKYDPEYFANFILEKLTPFTL-STDLCTRHGATLAAGEVVLALCKYDYAL 663 (1089)
Q Consensus 585 ~~li~~Ll~~~l~h~D~~iR~laa~aL~~L~~~~~~~~~~~vlp~Ll~~l~-~~d~~~RHG~lLalaevl~~l~~~~~~~ 663 (1089)
.|++..+....-.+-|++++..|.-||++++....+++..+ +|.++.-+. +++..+|..+++|+++++-.++....++
T Consensus 921 ~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces~-l~llftimeksp~p~IRsN~VvalgDlav~fpnlie~~ 999 (1251)
T KOG0414|consen 921 APIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCESH-LPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLIEPW 999 (1251)
T ss_pred HHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHhcCCCceeeecchheccchhhhcccccchh
Confidence 35666677666678899999999999999999888877664 788877665 7888999999999999999887766666
Q ss_pred ChhHHHHHHhhhHHHHhhhhccCcchHHHHHHHHHHHHHhhhcC-CCCchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 001381 664 PADKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSF-VSLPEKTKRSLLDTLNENLRHPNSQIQNAAVKALK 742 (1089)
Q Consensus 664 ~~~~~~~i~~i~~~~~~~~l~r~~~gelir~a~~~lI~~ls~~~-lp~~~~~~~~~~~~L~~~L~~~~~~V~~aAa~Al~ 742 (1089)
.+....++.+- ...+|..+...+.-+-... +. +...+.-+-.||.++++.|+.-|..-+.
T Consensus 1000 T~~Ly~rL~D~--------------~~~vRkta~lvlshLILndmiK-----VKGql~eMA~cl~D~~~~IsdlAk~FF~ 1060 (1251)
T KOG0414|consen 1000 TEHLYRRLRDE--------------SPSVRKTALLVLSHLILNDMIK-----VKGQLSEMALCLEDPNAEISDLAKSFFK 1060 (1251)
T ss_pred hHHHHHHhcCc--------------cHHHHHHHHHHHHHHHHhhhhH-----hcccHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 55444433221 1233333332222111111 11 1223334566889999999988866555
Q ss_pred HHHHHhhhccCcchhhhhHHHHHHHhCCCChhhhhhHHHHhhccchHhhhhhHHHHHHHHhhhcc
Q 001381 743 PFVQTYMVAADSGVVGGISLKYMEQLTDPNPAIRRGSALALGVLPYELLANSWRDVLLKLCSCCL 807 (1089)
Q Consensus 743 ~l~~~y~~~~~~~~~~~~v~~~~~~L~s~~~~~r~G~a~aLG~lp~~~~~~~~~~i~~~L~~~~~ 807 (1089)
.+.. + +..+-.+.+.++..|.+.+. ....+.-|++-|+..++
T Consensus 1061 Els~----k--~n~iynlLPdil~~Ls~~~l-----------------~~~~~~~vm~~li~~ik 1102 (1251)
T KOG0414|consen 1061 ELSS----K--GNTIYNLLPDILSRLSNGNL-----------------EEESYKTVMEFLIGLIK 1102 (1251)
T ss_pred Hhhh----c--ccchhhhchHHHHhhccCcc-----------------cchhhHHHHHHHHHHhc
Confidence 5543 2 34556777777777755321 22345556777777654
No 74
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=92.04 E-value=6.8 Score=51.48 Aligned_cols=158 Identities=20% Similarity=0.207 Sum_probs=88.2
Q ss_pred HHHHHhccccCCCChhhHHHHHHHHHHHHHHHhcccccCChhHHHHHHhhhHHHHhhhhccCcchHHHHHHHHHHHHHhh
Q 001381 625 FILEKLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPADKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECIS 704 (1089)
Q Consensus 625 ~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~l~~~~~~~~~~~~~~i~~i~~~~~~~~l~r~~~gelir~a~~~lI~~ls 704 (1089)
.++..|.+.+.++.|++|||+.+++.+++..-.+ .. +-+++-.-+.+++-.++
T Consensus 77 s~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~-------~~--------------------~~~~led~~~rll~v~~ 129 (1549)
T KOG0392|consen 77 SFLEELVNDLFEPQWEIRHGAAIALREILKTHGD-------SL--------------------SYELLEDLLIRLLCVLA 129 (1549)
T ss_pred HHHHHHHHHhcCchhhhhcCcchhhhhHHHHhcc-------hh--------------------hHHHHHHHHHHHHHHHH
Confidence 4567778888899999999999999999864221 00 00111111222222222
Q ss_pred hcCCCCchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCcchhhhhHHHHHHHhCCCChhhhhhHHHHhh
Q 001381 705 LSFVSLPEKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLTDPNPAIRRGSALALG 784 (1089)
Q Consensus 705 ~~~lp~~~~~~~~~~~~L~~~L~~~~~~V~~aAa~Al~~l~~~y~~~~~~~~~~~~v~~~~~~L~s~~~~~r~G~a~aLG 784 (1089)
++++-+.+. ..-...|+++.+.++.+++..... ....++++-..+.++..+-..|.|-..++-
T Consensus 130 ----------Ldrf~dfis---d~vvapVre~caq~L~~~l~~~~~----s~~~~~~~il~q~~~q~~w~ir~Ggll~ik 192 (1549)
T KOG0392|consen 130 ----------LDRFGDFIS---DNVVAPVREACAQALGAYLKHMDE----SLIKETLDILLQMLRQPNWEIRHGGLLGIK 192 (1549)
T ss_pred ----------HHHhccccc---ccchhhhHHHHHHHHHHHHHhhhh----HhhHHHHHHHHHHHcCcchhheechHHHHH
Confidence 233333332 223346888889999888775422 233566666666666666667777666643
Q ss_pred ccchHhhhhh----HHHHHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHhh
Q 001381 785 VLPYELLANS----WRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCET 833 (1089)
Q Consensus 785 ~lp~~~~~~~----~~~i~~~L~~~~~~~~~~~~~d~e~R~~al~sL~~i~~~ 833 (1089)
..-. ..++- ...+++..+.. .++.+.+.|..|...+..+...
T Consensus 193 y~~a-ir~d~l~~~~~~vl~~~i~~------L~ds~ddv~~~aa~~l~~~~s~ 238 (1549)
T KOG0392|consen 193 YNVA-IRQDLLFQLLNLVLDFVIEG------LEDSDDDVRSVAAQFLVPAPSI 238 (1549)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHhh------hhhcchHHHHHHHHHhhhhhHH
Confidence 3222 11111 11222222222 1566789999999998876543
No 75
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=91.35 E-value=0.3 Score=40.77 Aligned_cols=52 Identities=31% Similarity=0.339 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHccCchh---hHHHHHHHhccccCCCChhhHHHHHHHHHHH
Q 001381 601 KVLRELAAEALSALVKYDPEY---FANFILEKLTPFTLSTDLCTRHGATLAAGEV 652 (1089)
Q Consensus 601 ~~iR~laa~aL~~L~~~~~~~---~~~~vlp~Ll~~l~~~d~~~RHG~lLalaev 652 (1089)
+.+|+-|+.+||.++...++. ....++|.|.+.+.+++..+|+.++.+|+.+
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 368999999999988766643 4567888898899888889999999998754
No 76
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=91.17 E-value=11 Score=49.38 Aligned_cols=278 Identities=17% Similarity=0.167 Sum_probs=164.4
Q ss_pred HHHHHHHHHHHHHHcc-CchhhHHHHHHHhccccCCCChhhHHHHHHHHHHHHHHHhcccccCChhH-HHHHHhhhHHHH
Q 001381 602 VLRELAAEALSALVKY-DPEYFANFILEKLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPADK-QKIVAGIVPGIE 679 (1089)
Q Consensus 602 ~iR~laa~aL~~L~~~-~~~~~~~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~l~~~~~~~~~~~-~~~i~~i~~~~~ 679 (1089)
+.+.-|-+-|..|+.. +.+...+.|+|.++..+.+.+..+|--++.++++++....+.... +..+ .+. +++.+.
T Consensus 438 ~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~-daniF~eY---lfP~L~ 513 (1431)
T KOG1240|consen 438 QTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPS-DANIFPEY---LFPHLN 513 (1431)
T ss_pred hhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcc-cchhhHhh---hhhhhH
Confidence 4455555556666654 446677899999999999999999999999999999776543211 1111 122 233322
Q ss_pred hhhhccCcchHHHHHHHHHHHHHhhhcCCCCchhhHHHHHHH---HHHh--cCCCcHHHHHHHHHHHHHHHHHhhhccCc
Q 001381 680 KARLYRGKGGEIMRSAVSRFIECISLSFVSLPEKTKRSLLDT---LNEN--LRHPNSQIQNAAVKALKPFVQTYMVAADS 754 (1089)
Q Consensus 680 ~~~l~r~~~gelir~a~~~lI~~ls~~~lp~~~~~~~~~~~~---L~~~--L~~~~~~V~~aAa~Al~~l~~~y~~~~~~ 754 (1089)
+ +...-....+|-|.+.-|..+|.. .-+|+.. +..+ +..++.+- + -......+ .
T Consensus 514 ~--l~~d~~~~~vRiayAsnla~LA~t--------A~rFle~~q~~~~~g~~n~~nset---~---~~~~~~~~-----~ 572 (1431)
T KOG1240|consen 514 H--LLNDSSAQIVRIAYASNLAQLAKT--------AYRFLELTQELRQAGMLNDPNSET---A---PEQNYNTE-----L 572 (1431)
T ss_pred h--hhccCccceehhhHHhhHHHHHHH--------HHHHHHHHHHHHhcccccCccccc---c---cccccchH-----H
Confidence 1 111114567888888888777742 1222221 1111 22222220 0 00000000 0
Q ss_pred chhhhhHHHHHHH-hCCCChhhhhhHHHHhhccchHhhhhhHH-HHHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHh
Q 001381 755 GVVGGISLKYMEQ-LTDPNPAIRRGSALALGVLPYELLANSWR-DVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCE 832 (1089)
Q Consensus 755 ~~~~~~v~~~~~~-L~s~~~~~r~G~a~aLG~lp~~~~~~~~~-~i~~~L~~~~~~~~~~~~~d~e~R~~al~sL~~i~~ 832 (1089)
.+....|.+.... |.++.+.++|..-..++-|..++-+.+-. -|+.-|+.-+ .++|-.-|.+-.++|..++-
T Consensus 573 ~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfL------NDkDw~LR~aFfdsI~gvsi 646 (1431)
T KOG1240|consen 573 QALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFL------NDKDWRLRGAFFDSIVGVSI 646 (1431)
T ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHh------cCccHHHHHHHHhhccceEE
Confidence 1113334444433 35566788887777766666555333222 2444554443 56688899999999987765
Q ss_pred hhccccccccccCCcchhhhhhhhHHHHHHHHHHhcccCCCCCCCCcchHHHHHHHHHHHHHHHHhhccCCCCCCCCCcc
Q 001381 833 TLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEICTYILCKRDFVPSPEKPQE 912 (1089)
Q Consensus 833 ~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~L~DYT~D~RGDVGSwVR~aa~~~l~~l~~ll~~~~~~~~~~~~~~ 912 (1089)
-+|-. ..-+-+++.|.+||.|-+ -.|=..|+.++..++.
T Consensus 647 ~VG~r-----------------s~seyllPLl~Q~ltD~E--------E~Viv~aL~~ls~Lik---------------- 685 (1431)
T KOG1240|consen 647 FVGWR-----------------SVSEYLLPLLQQGLTDGE--------EAVIVSALGSLSILIK---------------- 685 (1431)
T ss_pred EEeee-----------------eHHHHHHHHHHHhccCcc--------hhhHHHHHHHHHHHHH----------------
Confidence 55531 123447788899998842 3466777777766541
Q ss_pred ccccCCCCccccccccCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHh
Q 001381 913 VKSELPGNVTAEKTLFDANLATNLVAGIVKQAVEKMDKLREAAAKVLRRIL 963 (1089)
Q Consensus 913 ~~~~~~~~~~~~~~~~~~~~~~~l~~~llrq~~EkiD~vR~~A~~~L~~l~ 963 (1089)
..++....+.+++..++=..+=+-+=||..+...+....
T Consensus 686 ------------~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~ 724 (1431)
T KOG1240|consen 686 ------------LGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIA 724 (1431)
T ss_pred ------------hcccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHH
Confidence 134566677888888888888889999998888887764
No 77
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.95 E-value=56 Score=41.61 Aligned_cols=98 Identities=20% Similarity=0.178 Sum_probs=60.1
Q ss_pred HHHHHHHHHhcCCCchhhHHHHHHHHHHhcccCCCCCCccceecccccchhhhHHHHHHHHHHHHhhhcchHHHHHHHHh
Q 001381 514 IAPHLLTVACYDREVNCRRAAAAAFQENVGRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDELLY 593 (1089)
Q Consensus 514 l~~~Ll~~alfD~e~~iRRaAsAAlQE~vGR~g~~p~GI~il~~~d~~~v~~r~~a~~~va~~va~~~~Y~~~li~~Ll~ 593 (1089)
|.++-+-.++.|++..||-.|..+|--+ |. .-..+|+-+=++
T Consensus 108 LSIntfQk~L~DpN~LiRasALRvlSsI--Rv------------------------------------p~IaPI~llAIk 149 (968)
T KOG1060|consen 108 LSINTFQKALKDPNQLIRASALRVLSSI--RV------------------------------------PMIAPIMLLAIK 149 (968)
T ss_pred eeHHHHHhhhcCCcHHHHHHHHHHHHhc--ch------------------------------------hhHHHHHHHHHH
Confidence 3344456677777777777777665321 10 112345555555
Q ss_pred CccCCCCHHHHHHHHHHHHHHHccCchhhH--HHHHHHhccccCCCChhhHHHHHHHHHHH
Q 001381 594 NKICHWDKVLRELAAEALSALVKYDPEYFA--NFILEKLTPFTLSTDLCTRHGATLAAGEV 652 (1089)
Q Consensus 594 ~~l~h~D~~iR~laa~aL~~L~~~~~~~~~--~~vlp~Ll~~l~~~d~~~RHG~lLalaev 652 (1089)
...++..+.+|+-||.|+-+|...+|++-. ..++..|+ .+.+..+--.+++|.-|+
T Consensus 150 ~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~e~I~~LL---aD~splVvgsAv~AF~ev 207 (968)
T KOG1060|consen 150 KAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQLEEVIKKLL---ADRSPLVVGSAVMAFEEV 207 (968)
T ss_pred HHhcCCcHHHHHHHHHhhHHHhcCChhhHHHHHHHHHHHh---cCCCCcchhHHHHHHHHh
Confidence 677899999999999999999999987543 23444443 333333433445554444
No 78
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.94 E-value=14 Score=46.46 Aligned_cols=287 Identities=16% Similarity=0.144 Sum_probs=154.6
Q ss_pred hHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhh---hCcchhhhHHHHHHh-hcCCCCCCcch---HH--HHHHHHH
Q 001381 379 PDILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSC---LTSSLSEEVFSSVLE-LFSPGEGDGSW---HG--GCLALAE 449 (1089)
Q Consensus 379 ~e~vE~iI~~ll~~L~d~dt~vR~saAK~l~rI~~~---L~~~~a~~vi~~il~-~l~~~~~~~~w---Hg--~~LaLae 449 (1089)
||.+|..+.-+...|.|+.+.||=-|-=++..|-.. |=+| |.+++...|. ..++..--++. |. -=.||.+
T Consensus 129 ~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~L~pD-apeLi~~fL~~e~DpsCkRNAFi~L~~~D~ErAl~Y 207 (948)
T KOG1058|consen 129 PELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHLIPD-APELIESFLLTEQDPSCKRNAFLMLFTTDPERALNY 207 (948)
T ss_pred HHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhhcCC-hHHHHHHHHHhccCchhHHHHHHHHHhcCHHHHHHH
Confidence 699999999999999999999999998888888765 3344 3444444443 22221100111 00 1123333
Q ss_pred HHhcCCCCCCcccchHHHHHHhhhhhccccccCCChhhhhhhhHHH--HHhhhccCccchhHHHHHHHHHHHHHHhcCCC
Q 001381 450 LARRGLLLPSSLPKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVC--WAFGRAYCHTDMRNILEQIAPHLLTVACYDRE 527 (1089)
Q Consensus 450 l~~~~ll~p~~l~~il~~i~~~L~f~~r~~~~svG~~VRDAacfi~--WslaR~~~~~~l~~~~~~l~~~Ll~~alfD~e 527 (1089)
|+....-.| .+.+++..++--+.+++...+- --.+-|+= ..+--+-++.. .-.-+. -++.++...
T Consensus 208 l~~~idqi~-~~~~~LqlViVE~Irkv~~~~p------~~~~~~i~~i~~lL~stssaV----~fEaa~--tlv~lS~~p 274 (948)
T KOG1058|consen 208 LLSNIDQIP-SFNDSLQLVIVELIRKVCLANP------AEKARYIRCIYNLLSSTSSAV----IFEAAG--TLVTLSNDP 274 (948)
T ss_pred HHhhHhhcc-CccHHHHHHHHHHHHHHHhcCH------HHhhHHHHHHHHHHhcCCchh----hhhhcc--eEEEccCCH
Confidence 322221111 1123333332223333322110 00111110 11110101100 000011 123344444
Q ss_pred chhhHHHHHHHHHHhcccCCCCCC---------------------ccceecccccchhhhHHHHHHHHHHHHhhhcchHH
Q 001381 528 VNCRRAAAAAFQENVGRQGNYPHG---------------------IDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYP 586 (1089)
Q Consensus 528 ~~iRRaAsAAlQE~vGR~g~~p~G---------------------I~il~~~d~~~v~~r~~a~~~va~~va~~~~Y~~~ 586 (1089)
--+++||+.-++=++.-.++--.- +|++...+-.-+..|++++.-+-..+... -.+.
T Consensus 275 ~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssr--Nved 352 (948)
T KOG1058|consen 275 TALKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSR--NVED 352 (948)
T ss_pred HHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhc--cHHH
Confidence 556666666665555444332111 15555555556677888743333333321 2344
Q ss_pred HHHHHHhC-----ccCCC-CHHHHHHHHHHHHHHHccCchhhHHHHHHHhccccCCCChhhHHHHHHHHHHHHHHHhccc
Q 001381 587 FVDELLYN-----KICHW-DKVLRELAAEALSALVKYDPEYFANFILEKLTPFTLSTDLCTRHGATLAAGEVVLALCKYD 660 (1089)
Q Consensus 587 li~~Ll~~-----~l~h~-D~~iR~laa~aL~~L~~~~~~~~~~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~l~~~~ 660 (1089)
++++|-+. .-.|- ..+.|++-.++++..+...|++ +.+++|-+++.+.+.+...-|+++..+.|++..++++
T Consensus 353 iv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~-aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~L- 430 (948)
T KOG1058|consen 353 IVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEV-AATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNL- 430 (948)
T ss_pred HHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHH-HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchH-
Confidence 55555442 12222 3467999999999999999885 5568999999999999999999999999999987643
Q ss_pred ccCChhHHHHHHhhhHHHHhhhhccC
Q 001381 661 YALPADKQKIVAGIVPGIEKARLYRG 686 (1089)
Q Consensus 661 ~~~~~~~~~~i~~i~~~~~~~~l~r~ 686 (1089)
-...++++..-++++...+.|||
T Consensus 431 ---r~~ii~~l~~~~~~irS~ki~rg 453 (948)
T KOG1058|consen 431 ---RASIIEKLLETFPQIRSSKICRG 453 (948)
T ss_pred ---HHHHHHHHHHhhhhhcccccchh
Confidence 13345566666666666666665
No 79
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=90.81 E-value=61 Score=41.84 Aligned_cols=74 Identities=28% Similarity=0.352 Sum_probs=64.2
Q ss_pred HHHHHHH-HHHHhhcCCCChhHHHHHHHHHHHHHhhhCcchhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHHhcC
Q 001381 380 DILEEII-EILLSGLRDTDTVVRWSAAKGIGRITSCLTSSLSEEVFSSVLELFSPGEGDGSWHGGCLALAELARRG 454 (1089)
Q Consensus 380 e~vE~iI-~~ll~~L~d~dt~vR~saAK~l~rI~~~L~~~~a~~vi~~il~~l~~~~~~~~wHg~~LaLael~~~~ 454 (1089)
+.+-..| +.|+..+.|+.+.+|-++|.+++-|+...-++--.|+++.|++++.. .+.++.||++=.|+|+...-
T Consensus 85 e~~K~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~Pd~WpElv~~i~~~l~~-~n~n~i~~am~vL~el~~ev 159 (1005)
T KOG2274|consen 85 EEVKALIREQLLNLLDDSNSKIRSAVAYAISSIAAVDYPDEWPELVPFILKLLSS-GNENSIHGAMRVLAELSDEV 159 (1005)
T ss_pred HHHHHHHHHHHHhhhhccccccchHHHHHHHHHHhccCchhhHHHHHHHHHHHhc-cchhhhhhHHHHHHHHHHHH
Confidence 5555555 66777888999999999999999999998888889999999999987 57889999999999987753
No 80
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=90.72 E-value=80 Score=43.03 Aligned_cols=507 Identities=19% Similarity=0.192 Sum_probs=244.5
Q ss_pred HHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhCcchh-hhHHHHHHhhcCCCCCCcchHHHHHHHHHHHhcCCCCCC
Q 001381 381 ILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSLS-EEVFSSVLELFSPGEGDGSWHGGCLALAELARRGLLLPS 459 (1089)
Q Consensus 381 ~vE~iI~~ll~~L~d~dt~vR~saAK~l~rI~~~L~~~~a-~~vi~~il~~l~~~~~~~~wHg~~LaLael~~~~ll~p~ 459 (1089)
-..-++..++..|+.+...+|-.|-|.++.|++.=|.-.. .+|-.+|...+.+.. .+..-+.|=| ++|.-+--|+
T Consensus 813 sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~Dss--asVREAaldL--vGrfvl~~~e 888 (1692)
T KOG1020|consen 813 SFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSS--ASVREAALDL--VGRFVLSIPE 888 (1692)
T ss_pred hhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccch--hHHHHHHHHH--HhhhhhccHH
Confidence 3455677778888899999999999999999987543332 456666666664431 2222222221 2333332344
Q ss_pred cccchHHHHHHhhhhhccccccCCChhhhhhhhHHHHHhhhccCccchhHHHHHHHHHHHHHHhcCCCchhhHHHHHHHH
Q 001381 460 SLPKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAAAAAFQ 539 (1089)
Q Consensus 460 ~l~~il~~i~~~L~f~~r~~~~svG~~VRDAacfi~WslaR~~~~~~l~~~~~~l~~~Ll~~alfD~e~~iRRaAsAAlQ 539 (1089)
.+++....|... -.-.|..||-=+-=+..=+.-.+.. +..+...++. + +.-+-|.|.||.+=+...|+
T Consensus 889 ~~~qyY~~i~er--------IlDtgvsVRKRvIKIlrdic~e~pd--f~~i~~~cak-m-lrRv~DEEg~I~kLv~etf~ 956 (1692)
T KOG1020|consen 889 LIFQYYDQIIER--------ILDTGVSVRKRVIKILRDICEETPD--FSKIVDMCAK-M-LRRVNDEEGNIKKLVRETFL 956 (1692)
T ss_pred HHHHHHHHHHhh--------cCCCchhHHHHHHHHHHHHHHhCCC--hhhHHHHHHH-H-HHHhccchhHHHHHHHHHHH
Confidence 444443333211 1245778888888887777766653 4333433333 3 47889999999999999999
Q ss_pred HHhcccCCCCCCccceecccccchhhhHHHHHHHHHHHHhh---hcchHHHHHHHHhCcc-CCCCHHHHHHHHHHHHHHH
Q 001381 540 ENVGRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQY---EGYLYPFVDELLYNKI-CHWDKVLRELAAEALSALV 615 (1089)
Q Consensus 540 E~vGR~g~~p~GI~il~~~d~~~v~~r~~a~~~va~~va~~---~~Y~~~li~~Ll~~~l-~h~D~~iR~laa~aL~~L~ 615 (1089)
++=--- .| + ..|.- +.-++-.+++.....++ ..|.+.++.|++++.. .-.+. |...+.
T Consensus 957 klWF~p--~~-~-----~~d~~--~~~~kI~~~~~vv~~~~d~~~~~~eqLl~~ilk~~~~~~~~~--------~~~~v~ 1018 (1692)
T KOG1020|consen 957 KLWFTP--VP-E-----VNDQP--AKARKISLEVDVVMSQVDLMNDWLEQLLDHILKFYLLKTMKE--------SVKPVA 1018 (1692)
T ss_pred HHhccC--CC-c-----ccccH--HHHHhhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhhhhhh--------hhhHHH
Confidence 863221 01 1 01111 22223333333322322 3688899999997422 11111 222222
Q ss_pred ccCchhhHHHHHHHhcc---ccCC--CChhhHHHHHHHHHHHHHHHhcccccC-ChhHHHHHHhhhHHHHhhhhccCcch
Q 001381 616 KYDPEYFANFILEKLTP---FTLS--TDLCTRHGATLAAGEVVLALCKYDYAL-PADKQKIVAGIVPGIEKARLYRGKGG 689 (1089)
Q Consensus 616 ~~~~~~~~~~vlp~Ll~---~l~~--~d~~~RHG~lLalaevl~~l~~~~~~~-~~~~~~~i~~i~~~~~~~~l~r~~~g 689 (1089)
...-.....-+..-+.. .+.+ ..-..--|-+++.=..+..|++..-.. .. ..+..+-+.+..+. ....+
T Consensus 1019 ~~~v~~~~~L~~~cl~~~i~ev~~~~~~~~~~~~~~~~~lstL~~FskirP~Llt~---khv~tL~PYL~s~~--~t~~~ 1093 (1692)
T KOG1020|consen 1019 LAKVTHVLNLLTHCLVEKISEVESDDMNEEESEVRLLAYLSTLFVFSKIRPQLLTK---KHVITLQPYLTSKA--STIEE 1093 (1692)
T ss_pred HhhcchHHHHHHHHHHHHHHhhhhHhhhcccchhHHHHHHHHHHHHHhcCchhccH---HHHHHhhhHHhccc--cchHH
Confidence 11111111111111111 1111 111122344455555555554321100 11 22222222222110 00011
Q ss_pred HHHHHHHHHHHHHhhhcCCCCchhhHHHHHHHHHHhc-----CCCcHHHHHHHHHHHHHHHHHhhhccCcchhhhhHHHH
Q 001381 690 EIMRSAVSRFIECISLSFVSLPEKTKRSLLDTLNENL-----RHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKY 764 (1089)
Q Consensus 690 elir~a~~~lI~~ls~~~lp~~~~~~~~~~~~L~~~L-----~~~~~~V~~aAa~Al~~l~~~y~~~~~~~~~~~~v~~~ 764 (1089)
.-+...+...++ .-+|+-...-..++..|++.| ++....|.. |+.++..+++..-. +.......+..|
T Consensus 1094 ~~fl~~vi~Ile----~VlPlv~~~sesfL~sLEe~L~~~i~k~g~a~V~~-~vsCl~sl~~k~~~--~~~~v~~cf~~~ 1166 (1692)
T KOG1020|consen 1094 AQFLYYVIQILE----CVLPLVANPSESFLASLEEDLLKRIVKMGMATVVE-AVSCLGSLATKRTD--GAKVVKACFSCY 1166 (1692)
T ss_pred HHHHHHHHHHHH----HHhhhhccchHHHHHHHHHHHHHHHHhcchHHHHH-HHHHHHHHHhhhcc--chHHHHHHHHHH
Confidence 122222222222 234543332233444444433 555555543 44566666554311 122335666777
Q ss_pred HHHhC----C--CC------hhhhhhHHHHhhccchHh-hh------hh--------HHHHHHHHhhhccccCCCCCCCH
Q 001381 765 MEQLT----D--PN------PAIRRGSALALGVLPYEL-LA------NS--------WRDVLLKLCSCCLIEENPEDRDT 817 (1089)
Q Consensus 765 ~~~L~----s--~~------~~~r~G~a~aLG~lp~~~-~~------~~--------~~~i~~~L~~~~~~~~~~~~~d~ 817 (1089)
.+.|+ + .+ +..+| ....+|.+..+. +. +. ...++..|..-++ ..+.
T Consensus 1167 ~k~le~~k~s~~en~~~~~~p~l~R-siftlG~l~Ryfdf~~~~~~g~~~~~~~~~~~e~v~~lL~~f~k------~~~~ 1239 (1692)
T KOG1020|consen 1167 LKLLEVIKSSNNENADIVNFPKLQR-SIFTLGLLSRYFDFPKPSNDGKTFLQEGETLKEKVLILLMYFSK------DKDG 1239 (1692)
T ss_pred HHHHHHHHhccccccchhhhHHHHH-HHHHHHHHHHhccCCCccCCCccchhhhhhHHHHHHHHHHHHHH------hhhh
Confidence 77662 2 22 33333 566777775532 10 01 1233333433332 3458
Q ss_pred HHHHHHHHHHHHHHhhhccccccccccCCcchhhhhhhhHHHHHHHHHHhcccCCCCCCCCcchHHHHHHHHHHHHHHHH
Q 001381 818 EARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEICTYI 897 (1089)
Q Consensus 818 e~R~~al~sL~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~L~DYT~D~RGDVGSwVR~aa~~~l~~l~~l 897 (1089)
+-|+.|+.+|+.+|-...- .+.+ ..+.+++.+-|.|-.. |++ -+..+++.+... |
T Consensus 1240 ~lR~~al~~Lg~~ci~hp~--------------l~~~---~~v~nly~~ila~~n~----~~~--~ki~~l~n~~~y--L 1294 (1692)
T KOG1020|consen 1240 ELRRKALINLGFICIQHPS--------------LFTS---REVLNLYDEILADDNS----DIK--SKIQLLQNLELY--L 1294 (1692)
T ss_pred HHHHHHHHHHHHHHhhCch--------------hhhh---HHHHHHHHHHHhhhcc----cHH--HHHHHHHHHHHH--H
Confidence 9999999999999854211 2222 3455555555555333 344 455566555433 2
Q ss_pred hhccCCCCCCCC------Cccc--cccCCCCccccccccCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcc
Q 001381 898 LCKRDFVPSPEK------PQEV--KSELPGNVTAEKTLFDANLATNLVAGIVKQAVEKMDKLREAAAKVLRRILYNK 966 (1089)
Q Consensus 898 l~~~~~~~~~~~------~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~llrq~~EkiD~vR~~A~~~L~~l~~~~ 966 (1089)
+...-..+.+++ -++. ...+.+....... .....++....++|..+..+=+++|..|.+++.-+++-.
T Consensus 1295 ~eee~~l~~~~~~w~~~~k~edlkem~~v~sg~~s~~-~~~~i~Qlfl~~ILe~cl~~d~~~r~~aikvl~liL~QG 1370 (1692)
T KOG1020|consen 1295 LEEEKKLRNKGKNWTKSNKSEDLKEMLDVSSGMGSSD-GVSAIMQLFLDNILESCLDRDLQVRLVAIKVLKLILNQG 1370 (1692)
T ss_pred HHHHHHHHhcccchhhhhhHHHHHhhccccccccccc-chHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHcc
Confidence 220000011111 0000 0000110011111 124577788889999999999999999999999888654
No 81
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=90.55 E-value=0.42 Score=43.40 Aligned_cols=58 Identities=29% Similarity=0.470 Sum_probs=41.6
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhCcchhhhHHHHHHhhcCCCCCCcchHHHHHHHH
Q 001381 384 EIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSLSEEVFSSVLELFSPGEGDGSWHGGCLALA 448 (1089)
Q Consensus 384 ~iI~~ll~~L~d~dt~vR~saAK~l~rI~~~L~~~~a~~vi~~il~~l~~~~~~~~wHg~~LaLa 448 (1089)
++++.|...++|+++.||..++.+||+|.. ++.++.+.+.+.+..+....+.++-+||
T Consensus 31 ~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~-------~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 31 EAIPALIELLKDEDPMVRRAAARALGRIGD-------PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHHHHHHTSSSHHHHHHHHHHHHCCHH-------HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-------HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 557777777799999999999999999852 5678888888866543332344555543
No 82
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.56 E-value=87 Score=41.67 Aligned_cols=387 Identities=14% Similarity=0.154 Sum_probs=194.4
Q ss_pred hhhhhhHHHHHhhhccC--ccchhHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHhcccCCCCCCccceecccccchh
Q 001381 487 VRDAAAYVCWAFGRAYC--HTDMRNILEQIAPHLLTVACYDREVNCRRAAAAAFQENVGRQGNYPHGIDIVNTADYFSLS 564 (1089)
Q Consensus 487 VRDAacfi~WslaR~~~--~~~l~~~~~~l~~~Ll~~alfD~e~~iRRaAsAAlQE~vGR~g~~p~GI~il~~~d~~~v~ 564 (1089)
+=|+-||=+|++--.|+ |-++..-+..+|..|...-.+-+ ..|-.-..+|+++|+--- | .
T Consensus 490 ~~~tl~~QLW~LLP~FC~~P~Dl~~sF~~la~~l~~al~~~~--elr~~Ic~sL~~Lv~~n~--~----~---------- 551 (1176)
T KOG1248|consen 490 LYDTLVDQLWSLLPGFCNYPVDLAESFTDLAPILGAALLKRP--ELRETICNSLRMLVEQNK--P----S---------- 551 (1176)
T ss_pred HHHHHHHHHHHhChhhhCCCccHHHHHHHHHHHHHHHHhcch--HhHHHHHHHHHHHHHcCC--C----c----------
Confidence 67999999999999887 45777777788888765555544 889999999999987631 1 0
Q ss_pred hhHHHHHHHHHHHHhhhcchHHHHHHHHhC-ccCC----CCHHHHHHHHHHHH-HHHccCchhhHHHHHHHhccccCCCC
Q 001381 565 SRVYSYLHVAVFIAQYEGYLYPFVDELLYN-KICH----WDKVLRELAAEALS-ALVKYDPEYFANFILEKLTPFTLSTD 638 (1089)
Q Consensus 565 ~r~~a~~~va~~va~~~~Y~~~li~~Ll~~-~l~h----~D~~iR~laa~aL~-~L~~~~~~~~~~~vlp~Ll~~l~~~d 638 (1089)
.+.+.-.+-...|-..+++-|++. .-.+ .+...|.---.... ......|..+.......+-....+.|
T Consensus 552 ------~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L~~i~~~~~~~t~~dv~~~l~~s~~e~as~~~ 625 (1176)
T KOG1248|consen 552 ------SDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGRKILASRSTVLEIIRVDYFTVTPTDVVGSLKDSAGELASDLD 625 (1176)
T ss_pred ------chHHHHHHHHhhhhhHHHHHHHHHhcCCCccccccHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhHhccch
Confidence 001111111122333333333321 1111 22233322222222 11112222222211111111112221
Q ss_pred hhhHHHHHHHHHHHHHHHhcccccCChhHHHHHHhhhHHHHhhhhccCcchHHHHHHHHHHHHHhhhcCCCCc----hhh
Q 001381 639 LCTRHGATLAAGEVVLALCKYDYALPADKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLP----EKT 714 (1089)
Q Consensus 639 ~~~RHG~lLalaevl~~l~~~~~~~~~~~~~~i~~i~~~~~~~~l~r~~~gelir~a~~~lI~~ls~~~lp~~----~~~ 714 (1089)
...+-=-.+.+=.++.++. ...++..+..+..+.+..++. ...-+..-+.++++.++.. |.. .+.
T Consensus 626 ~s~~~~~~~slLdl~~~~a---~~~~e~~vs~l~~v~~~~e~~------~~~~vQkK~yrlL~~l~~~--~s~~~~~~q~ 694 (1176)
T KOG1248|consen 626 ESVASFKTLSLLDLLIALA---PVQTESQVSKLFTVDPEFENS------SSTKVQKKAYRLLEELSSS--PSGEGLVEQR 694 (1176)
T ss_pred hhhhhHHHHHHHHHHHhhh---ccccchhHHHHHHhhHHhhcc------ccHHHHHHHHHHHHHHhcC--CchhhHHHHH
Confidence 1111111111111111111 111233333333333333321 1223333445555554432 211 235
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCcchhhhhHHHHHHHhCCCChhhhhhHHHHhhccch---Hhh
Q 001381 715 KRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLTDPNPAIRRGSALALGVLPY---ELL 791 (1089)
Q Consensus 715 ~~~~~~~L~~~L~~~~~~V~~aAa~Al~~l~~~y~~~~~~~~~~~~v~~~~~~L~s~~~~~r~G~a~aLG~lp~---~~~ 791 (1089)
++...+.+.+++......+|..+-+++..+++.... .....+.+.|++.+=.++..|..+|+.+...|=.+-. +.-
T Consensus 695 i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~-e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d 773 (1176)
T KOG1248|consen 695 IDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSA-EHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLD 773 (1176)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhc
Confidence 567777788888888888888888888877765310 0011123333333322366777788766555433331 110
Q ss_pred --hh----hHHHHHHHHhhhccccCCCCCCCHHHHH-HH-HHHHHHHHhhhccccccccccCCcchhhhhhhhHHHHHHH
Q 001381 792 --AN----SWRDVLLKLCSCCLIEENPEDRDTEARV-NA-VRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTS 863 (1089)
Q Consensus 792 --~~----~~~~i~~~L~~~~~~~~~~~~~d~e~R~-~a-l~sL~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 863 (1089)
.+ .+.+.+..+.... ..| ++|. ++ +.++..++...+. .+....+..+++.
T Consensus 774 ~g~e~~~~~lnefl~~Isagl-------~gd-~~~~~as~Ivai~~il~e~~~--------------~ld~~~l~~li~~ 831 (1176)
T KOG1248|consen 774 DGNEPASAILNEFLSIISAGL-------VGD-STRVVASDIVAITHILQEFKN--------------ILDDETLEKLISM 831 (1176)
T ss_pred ccccchHHHHHHHHHHHHhhh-------ccc-HHHHHHHHHHHHHHHHHHHhc--------------cccHHHHHHHHHH
Confidence 01 1233333332221 112 3333 22 6666666654332 1223556677777
Q ss_pred HHHhcccCCCCCCCCcchHHHHHHHHHHHHHHHHhhccCCCCCCCCCccccccCCCCccccccccCHHHHHHHHHHHHHH
Q 001381 864 LFKALDDYSVDNRGDVGSWVREAAVDGLEICTYILCKRDFVPSPEKPQEVKSELPGNVTAEKTLFDANLATNLVAGIVKQ 943 (1089)
Q Consensus 864 Ll~~L~DYT~D~RGDVGSwVR~aa~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~llrq 943 (1089)
+..++.-= -.-||.+|+.+++.+++- .|...-.....+++..+++.
T Consensus 832 V~~~L~s~--------sreI~kaAI~fikvlv~~--------------------------~pe~~l~~~~~~LL~sll~l 877 (1176)
T KOG1248|consen 832 VCLYLASN--------SREIAKAAIGFIKVLVYK--------------------------FPEECLSPHLEELLPSLLAL 877 (1176)
T ss_pred HHHHHhcC--------CHHHHHHHHHHHHHHHHc--------------------------CCHHHHhhhHHHHHHHHHHH
Confidence 76666332 245899999999887622 22222345677899999999
Q ss_pred hhhhhHHHHHHHHHHHHHHhhc
Q 001381 944 AVEKMDKLREAAAKVLRRILYN 965 (1089)
Q Consensus 944 ~~EkiD~vR~~A~~~L~~l~~~ 965 (1089)
+-|.=-++|.+...+|.+++..
T Consensus 878 s~d~k~~~r~Kvr~LlekLirk 899 (1176)
T KOG1248|consen 878 SHDHKIKVRKKVRLLLEKLIRK 899 (1176)
T ss_pred HHhhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988754
No 83
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=89.20 E-value=15 Score=44.77 Aligned_cols=135 Identities=17% Similarity=0.200 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHhcCCCchhhHHHHHHHHH-HhcccCCCCCCccceecccccchhhhHHHHHHHHHHHHhhhcchHHHHHH
Q 001381 512 EQIAPHLLTVACYDREVNCRRAAAAAFQE-NVGRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDE 590 (1089)
Q Consensus 512 ~~l~~~Ll~~alfD~e~~iRRaAsAAlQE-~vGR~g~~p~GI~il~~~d~~~v~~r~~a~~~va~~va~~~~Y~~~li~~ 590 (1089)
|+.+-+++..-++|.|...|.+..=++.- .+|. | ...++..
T Consensus 514 qe~add~I~ell~d~ds~lRy~G~fs~alAy~GT-g-------------------------------------n~~vv~~ 555 (926)
T COG5116 514 QEMADDYINELLYDKDSILRYNGVFSLALAYVGT-G-------------------------------------NLGVVST 555 (926)
T ss_pred HHHHHHHHHHHhcCchHHhhhccHHHHHHHHhcC-C-------------------------------------cchhHhh
Confidence 56777788888999999999875433221 1111 1 1235666
Q ss_pred HHhCccCCCCHHHHHHHHHHHHHHHccCchhhHHHHHHHhcc-ccCCCChhhHHHHHHHHHHHHHHHhcccccCChhHHH
Q 001381 591 LLYNKICHWDKVLRELAAEALSALVKYDPEYFANFILEKLTP-FTLSTDLCTRHGATLAAGEVVLALCKYDYALPADKQK 669 (1089)
Q Consensus 591 Ll~~~l~h~D~~iR~laa~aL~~L~~~~~~~~~~~vlp~Ll~-~l~~~d~~~RHG~lLalaevl~~l~~~~~~~~~~~~~ 669 (1089)
|+-.-+.+-|-.+|+.|--|||-+|-.++..+.. .++ ...+.+..+|.|...+|+--..+- .+..
T Consensus 556 lLh~avsD~nDDVrRAAViAlGfvc~~D~~~lv~-----tvelLs~shN~hVR~g~AvaLGiacag~------G~~~--- 621 (926)
T COG5116 556 LLHYAVSDGNDDVRRAAVIALGFVCCDDRDLLVG-----TVELLSESHNFHVRAGVAVALGIACAGT------GDKV--- 621 (926)
T ss_pred hheeecccCchHHHHHHHHheeeeEecCcchhhH-----HHHHhhhccchhhhhhhHHHhhhhhcCC------ccHH---
Confidence 6666677889999999999999999988764443 333 335788899999998887654321 1111
Q ss_pred HHHhhhHHHHhhhhccCcchHHHHHHHHHHHHHhhh
Q 001381 670 IVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISL 705 (1089)
Q Consensus 670 ~i~~i~~~~~~~~l~r~~~gelir~a~~~lI~~ls~ 705 (1089)
-.+++..+.+. ..+++|+++|.-.+-+-.
T Consensus 622 -a~diL~~L~~D------~~dfVRQ~AmIa~~mIl~ 650 (926)
T COG5116 622 -ATDILEALMYD------TNDFVRQSAMIAVGMILM 650 (926)
T ss_pred -HHHHHHHHhhC------cHHHHHHHHHHHHHHHHh
Confidence 22344444322 257899998877665443
No 84
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=88.78 E-value=30 Score=41.92 Aligned_cols=59 Identities=24% Similarity=0.238 Sum_probs=46.3
Q ss_pred CChhHHHHHHHHHHHHHhhhCcchhhhHHHH-HHhhcCCCCCCcchHHHHHHHHHHHhcCC
Q 001381 396 TDTVVRWSAAKGIGRITSCLTSSLSEEVFSS-VLELFSPGEGDGSWHGGCLALAELARRGL 455 (1089)
Q Consensus 396 ~dt~vR~saAK~l~rI~~~L~~~~a~~vi~~-il~~l~~~~~~~~wHg~~LaLael~~~~l 455 (1089)
..+..|..+||+||.+...+|.+....+... ++..|++. +...-+.+++.+.|.+..--
T Consensus 99 ~v~r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~-sa~qR~~aalvl~ewa~~~~ 158 (441)
T PF12054_consen 99 VVIRARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSP-SATQRLLAALVLEEWAKACK 158 (441)
T ss_pred HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcch-hHHHHHHHHHHHHHHHHhCc
Confidence 4578899999999999999998888888875 66677543 23345679999999988754
No 85
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=88.65 E-value=5.3 Score=52.24 Aligned_cols=244 Identities=17% Similarity=0.214 Sum_probs=143.9
Q ss_pred HHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhh---hCcchhhhHHHHHHhhcCCCCCC-cchH-----HHHHH-HHH
Q 001381 380 DILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSC---LTSSLSEEVFSSVLELFSPGEGD-GSWH-----GGCLA-LAE 449 (1089)
Q Consensus 380 e~vE~iI~~ll~~L~d~dt~vR~saAK~l~rI~~~---L~~~~a~~vi~~il~~l~~~~~~-~~wH-----g~~La-Lae 449 (1089)
..+..|+.+++.-++|+++.||-+|--.|.++..- +|+.-+.-..++++-.++....+ ..-| ..||+ ||.
T Consensus 458 ~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~ 537 (1431)
T KOG1240|consen 458 VKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAK 537 (1431)
T ss_pred HHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHH
Confidence 67999999999999999999999999998888765 56665666667777655443222 1111 11221 122
Q ss_pred HHhcCCCCCCcccchHHHHHHhhhhhccccc--cCCChhhhhhhhHHHHHhh-hccCccchhHHHHHHHHHHHHHHhcCC
Q 001381 450 LARRGLLLPSSLPKVVPVIVKALHYDIRRGS--HSVGSHVRDAAAYVCWAFG-RAYCHTDMRNILEQIAPHLLTVACYDR 526 (1089)
Q Consensus 450 l~~~~ll~p~~l~~il~~i~~~L~f~~r~~~--~svG~~VRDAacfi~Wsla-R~~~~~~l~~~~~~l~~~Ll~~alfD~ 526 (1089)
-+.+ .+. +.|+++... ..--++ -.. -.|++ ++. -+...+...+..-|-|+
T Consensus 538 tA~r-------------Fle--~~q~~~~~g~~n~~nse----------t~~~~~~~~-~~~-~L~~~V~~~v~sLlsd~ 590 (1431)
T KOG1240|consen 538 TAYR-------------FLE--LTQELRQAGMLNDPNSE----------TAPEQNYNT-ELQ-ALHHTVEQMVSSLLSDS 590 (1431)
T ss_pred HHHH-------------HHH--HHHHHHhcccccCcccc----------cccccccch-HHH-HHHHHHHHHHHHHHcCC
Confidence 1111 110 112221110 000000 000 01111 222 23344556677788999
Q ss_pred CchhhHHHHHHHHHH---hcccCC--C--CCCccceecccccchhhhHHHHHHHHHHHHhh------hcchHHHHHHHHh
Q 001381 527 EVNCRRAAAAAFQEN---VGRQGN--Y--PHGIDIVNTADYFSLSSRVYSYLHVAVFIAQY------EGYLYPFVDELLY 593 (1089)
Q Consensus 527 e~~iRRaAsAAlQE~---vGR~g~--~--p~GI~il~~~d~~~v~~r~~a~~~va~~va~~------~~Y~~~li~~Ll~ 593 (1089)
+.++|||=..++-++ -||.++ + +|=|.-++--| -.++.||.+--..|+-| ++|.-|++.
T Consensus 591 ~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkD----w~LR~aFfdsI~gvsi~VG~rs~seyllPLl~---- 662 (1431)
T KOG1240|consen 591 PPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKD----WRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQ---- 662 (1431)
T ss_pred chHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCcc----HHHHHHHHhhccceEEEEeeeeHHHHHHHHHH----
Confidence 999999877776653 366542 1 33333333222 24556666554444433 456555543
Q ss_pred CccCCCCHHHHHHHHHHHHHHHccCc--hhhHHHHHHHhccccCCCChhhHHHHHHHHHHHHHHHhc
Q 001381 594 NKICHWDKVLRELAAEALSALVKYDP--EYFANFILEKLTPFTLSTDLCTRHGATLAAGEVVLALCK 658 (1089)
Q Consensus 594 ~~l~h~D~~iR~laa~aL~~L~~~~~--~~~~~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~l~~ 658 (1089)
-+|.+-.+.+-.-|-+||.-|++..- ......++...++.+-.++..+||+++--++++...++.
T Consensus 663 Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~ 729 (1431)
T KOG1240|consen 663 QGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSA 729 (1431)
T ss_pred HhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhh
Confidence 47888999998889899998887431 122334566666777789999999999999999887764
No 86
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=88.35 E-value=21 Score=43.27 Aligned_cols=106 Identities=21% Similarity=0.138 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHccCchhhHHHHHH-HhccccCCCChhhHHHHHHHHHHHHHHHhcccccC-ChhHHHHHHhhhHHH
Q 001381 601 KVLRELAAEALSALVKYDPEYFANFILE-KLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYAL-PADKQKIVAGIVPGI 678 (1089)
Q Consensus 601 ~~iR~laa~aL~~L~~~~~~~~~~~vlp-~Ll~~l~~~d~~~RHG~lLalaevl~~l~~~~~~~-~~~~~~~i~~i~~~~ 678 (1089)
...|-.||+|||.++..-|......+.. .|+..+.+.-...|+.+.+-+.|-........... .+.....+..++..-
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L~~~ 180 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEILENP 180 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHHcCC
Confidence 3678999999999999877666655665 47788888888999999998888776544322111 122333333333310
Q ss_pred HhhhhccCcch--HHHHHHHHHHHHHhhhcC
Q 001381 679 EKARLYRGKGG--EIMRSAVSRFIECISLSF 707 (1089)
Q Consensus 679 ~~~~l~r~~~g--elir~a~~~lI~~ls~~~ 707 (1089)
....|+-... .-||..+-.|+..+...+
T Consensus 181 -~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~g 210 (441)
T PF12054_consen 181 -EPPYYDELVPSLKRLRTECQQLLATFRDVG 210 (441)
T ss_pred -CCCCHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 1222322111 236777777777655443
No 87
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=88.29 E-value=47 Score=41.25 Aligned_cols=158 Identities=14% Similarity=0.136 Sum_probs=83.6
Q ss_pred chHHHHHHHHHHHHHhhhcCCCCchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCcchhhhhHHHHHHH
Q 001381 688 GGEIMRSAVSRFIECISLSFVSLPEKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQ 767 (1089)
Q Consensus 688 ~gelir~a~~~lI~~ls~~~lp~~~~~~~~~~~~L~~~L~~~~~~V~~aAa~Al~~l~~~y~~~~~~~~~~~~v~~~~~~ 767 (1089)
|+.-...-++.+|..... .+|-. .+.-++.+.+...+.+..||..|..++..++. ++.+-+.++++-+.+.
T Consensus 34 g~~k~K~Laaq~I~kffk-~FP~l---~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck-----~~~~~v~kvaDvL~Ql 104 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFK-HFPDL---QEEAINAQLDLCEDEDVQIRKQAIKGLPQLCK-----DNPEHVSKVADVLVQL 104 (556)
T ss_dssp S-HHHHHHHHHHHHHHHC-C-GGG---HHHHHHHHHHHHT-SSHHHHHHHHHHGGGG-------T--T-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHh-hChhh---HHHHHHHHHHHHhcccHHHHHHHHHhHHHHHH-----hHHHHHhHHHHHHHHH
Confidence 455677778888887764 55532 22333333333378999999999999988765 2345567888888888
Q ss_pred hCCCChhhhhhHHHHhhccchHhhhhhHHHHHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHhhhccccccccccCCc
Q 001381 768 LTDPNPAIRRGSALALGVLPYELLANSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQSQENSLIHSGE 847 (1089)
Q Consensus 768 L~s~~~~~r~G~a~aLG~lp~~~~~~~~~~i~~~L~~~~~~~~~~~~~d~e~R~~al~sL~~i~~~~g~~~~~~~~~~~~ 847 (1089)
|.+.++....-.-.+|-.+-+.-....+..+++.+... ...|-.+|-.+++-|..-+..++..-.
T Consensus 105 L~tdd~~E~~~v~~sL~~ll~~d~k~tL~~lf~~i~~~-------~~~de~~Re~~lkFl~~kl~~l~~~~~-------- 169 (556)
T PF05918_consen 105 LQTDDPVELDAVKNSLMSLLKQDPKGTLTGLFSQIESS-------KSGDEQVRERALKFLREKLKPLKPELL-------- 169 (556)
T ss_dssp TT---HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH----------HS-HHHHHHHHHHHHHHGGGS-TTTS--------
T ss_pred HhcccHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-------ccCchHHHHHHHHHHHHHHhhCcHHHh--------
Confidence 88777665554445554444333333333344333211 233567899999888765554433200
Q ss_pred chhhhhhhhHHHHHHHHHHhcccCC
Q 001381 848 DEISLFHLIKNEVMTSLFKALDDYS 872 (1089)
Q Consensus 848 ~~~~~~~~~~~~i~~~Ll~~L~DYT 872 (1089)
...++.-.-|++.+.+.|.|-|
T Consensus 170 ---~p~~E~e~~i~~~ikkvL~DVT 191 (556)
T PF05918_consen 170 ---TPQKEMEEFIVDEIKKVLQDVT 191 (556)
T ss_dssp ------HHHHHHHHHHHHHHCTT--
T ss_pred ---hchHHHHHHHHHHHHHHHHhcc
Confidence 0012344456666677787743
No 88
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=87.89 E-value=49 Score=41.64 Aligned_cols=133 Identities=21% Similarity=0.243 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhCcchhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHHhcCCCCCC
Q 001381 380 DILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSLSEEVFSSVLELFSPGEGDGSWHGGCLALAELARRGLLLPS 459 (1089)
Q Consensus 380 e~vE~iI~~ll~~L~d~dt~vR~saAK~l~rI~~~L~~~~a~~vi~~il~~l~~~~~~~~wHg~~LaLael~~~~ll~p~ 459 (1089)
+....++..++..|.|+.+.||-.|-++|+|...- |.+--..|++.+...+..+.++.....+++-+ ..-++
T Consensus 122 ~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d-~~dee~~v~n~l~~liqnDpS~EVRRaaLsnI-------~vdns 193 (892)
T KOG2025|consen 122 DVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGD-PKDEECPVVNLLKDLIQNDPSDEVRRAALSNI-------SVDNS 193 (892)
T ss_pred HHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcC-CCCCcccHHHHHHHHHhcCCcHHHHHHHHHhh-------ccCcc
Confidence 34566778889999999999999999999999852 22323467777777776554444444433332 12333
Q ss_pred cccchHHHHHHhhhhhccccccCCChhhhhhhhHHHHHhhhccCccchhHHHHHHHHHHHHHHhcCCCchhhHHHHHHH
Q 001381 460 SLPKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAAAAAF 538 (1089)
Q Consensus 460 ~l~~il~~i~~~L~f~~r~~~~svG~~VRDAacfi~WslaR~~~~~~l~~~~~~l~~~Ll~~alfD~e~~iRRaAsAAl 538 (1089)
-+|.|+.-.... ...+|--+ -+|....-++...-......|+.-++-|||..+|.|+.-++
T Consensus 194 Tlp~IveRarDV------------~~anRrlv------Y~r~lpkid~r~lsi~krv~LlewgLnDRe~sVk~A~~d~i 254 (892)
T KOG2025|consen 194 TLPCIVERARDV------------SGANRRLV------YERCLPKIDLRSLSIDKRVLLLEWGLNDREFSVKGALVDAI 254 (892)
T ss_pred cchhHHHHhhhh------------hHHHHHHH------HHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 455554332110 01111111 11222222233333346677899999999999999887765
No 89
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=87.54 E-value=22 Score=40.58 Aligned_cols=72 Identities=24% Similarity=0.186 Sum_probs=59.1
Q ss_pred hHHHHHHHHhCccCCCCHHHHHHHHHHHHHHHccCchhhHHHHHHHhccccCCCChhhHHHHHHHHHHHHHHH
Q 001381 584 LYPFVDELLYNKICHWDKVLRELAAEALSALVKYDPEYFANFILEKLTPFTLSTDLCTRHGATLAAGEVVLAL 656 (1089)
Q Consensus 584 ~~~li~~Ll~~~l~h~D~~iR~laa~aL~~L~~~~~~~~~~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~l 656 (1089)
...++++|+...+.|.|..+|+.|-++||-.+-.+.+ .+...++.+...+...+..++--++-++.+++...
T Consensus 24 l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~-~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~ 95 (298)
T PF12719_consen 24 LESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKE-LAKEHLPLFLQALQKDDEEVKITALKALFDLLLTH 95 (298)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChH-HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc
Confidence 4589999998899999999999999999999988875 44556777877777778888887788888877643
No 90
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.79 E-value=1.2e+02 Score=39.85 Aligned_cols=392 Identities=17% Similarity=0.166 Sum_probs=194.0
Q ss_pred HHHHhhhhcCCCchHhHHhhHHHHHHHHHhhccc-------CCCChhHHhhhhHHHHHhheeeeeeecccce--------
Q 001381 55 SIMDKYQEQGQLVEPYLENIVSPLMSIIRSKTIE-------LGADSDEILKIIKPICIIIYTLVTVCGYKAV-------- 119 (1089)
Q Consensus 55 ~il~~yqeqP~LLD~~L~~~i~~L~~~~~~~~~~-------~~~~~~~~~~~~~~i~~~lY~l~KVRG~K~i-------- 119 (1089)
.||+-+-..|.++-++|..++.-++..=.....+ ...++++... .-..--++|.++|+=-||.-
T Consensus 93 nIl~~iv~~p~~iRvql~~~l~~Ii~~D~p~~Wp~l~d~i~~~Lqs~~~~~-vy~aLl~l~qL~k~ye~k~~eeR~~l~~ 171 (1010)
T KOG1991|consen 93 NILETIVQVPELIRVQLTACLNTIIKADYPEQWPGLLDKIKNLLQSQDANH-VYGALLCLYQLFKTYEWKKDEERQPLGE 171 (1010)
T ss_pred HHHHHHHhCchHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHhcCcchhh-HHHHHHHHHHHHHHHhhccccccccHHH
Confidence 3555555668888888877665554310000000 0011122111 12344568999998777753
Q ss_pred --eccCCCCccCHHHHHHHHHhccccccccccccCCcchhHHHHHHHH--HHHHHhhcCCCCCCCCCcccccccCCCCCC
Q 001381 120 --IKFFPHQVSDLELAVSLLEKCHDTASVTSLRQESTGEMEAKCVILL--WLSILVLVPFDISSVDTSIANNENLGQNEP 195 (1089)
Q Consensus 120 --~~~fP~ev~~Le~vl~~l~~~~~~~~~~~~~~~~~~~We~~YvlLl--WLS~Lvl~PFdL~~id~~~~~~~~~~~~~~ 195 (1089)
-.+||+ .+.....++...+ ...=+..+.+|- |-.+..-.|+.|...+.
T Consensus 172 ~v~~~fP~---il~~~~~ll~~~s------------~~s~el~klIlKifks~~~~~LP~~L~~~~~------------- 223 (1010)
T KOG1991|consen 172 AVEELFPD---ILQIFNGLLSQES------------YQSVELQKLILKIFKSLIYYELPLELSAPET------------- 223 (1010)
T ss_pred HHHHHHHH---HHHHHHhhccccc------------hHHHHHHHHHHHHHHHHHHHhCCHHhhCchh-------------
Confidence 445665 4444444443322 234467777777 88888999999988443
Q ss_pred hhHHHHHHHHHHHhhhcCCc------------------hhhHHHHHHHHHhcC---CChH-HHHHHHHHHHHHhcccccc
Q 001381 196 APLVMRILGFCKDYLSNAGP------------------MRTIAGLLLAKLLTR---PDMP-TAFASFVEWTHEVLSSVTD 253 (1089)
Q Consensus 196 ~~l~~rIl~l~~~yL~~~~k------------------~r~~Aa~LLsrl~tR---~D~~-~~l~~f~~w~~~~l~~~~~ 253 (1089)
...-+.++..-+..|.. ++.=|+.-|.|+++| |--. ...+.|-+|....
T Consensus 224 ---f~~W~~l~l~i~~rpvP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n------ 294 (1010)
T KOG1991|consen 224 ---FTSWMELFLSILNRPVPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKN------ 294 (1010)
T ss_pred ---HHHHHHHHHHHHcCCCChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHH------
Confidence 33444555544444433 666788899999998 1111 1145566654432
Q ss_pred ccchhHHHHHHHHHHHHHHHhcChhhhhhhhHHHHHhhhhhhccCcCCCchhHHHHHHHHHHHhhhcccCCCCccccccc
Q 001381 254 DVMNHFRLLGVVEALAAIFKAGGRKVLLDVIPVVWNDASTMLKSGSAARSPLLRKYLMKLTQRLGLTCLPRCTSAWRYVI 333 (1089)
Q Consensus 254 ~~~~~~~~~G~L~~l~~ilk~~~~~~l~~~~~~i~~~~~~l~~~~~~~~~~l~rKl~~Kl~~rlal~~L~pr~~~wrY~r 333 (1089)
| ..|+|.++-+++-.= ..=.-..+.++..+.+.-... ...+..-+-+.+.+---+.-+..|
T Consensus 295 -----~-~~~ile~~lk~l~~~--~~~~yls~rvl~~~l~fl~~~-Vs~~~twkll~PHl~~ii~~vIFP---------- 355 (1010)
T KOG1991|consen 295 -----F-AQGILEVFLKILEQW--RQQLYLSDRVLYYLLNFLEQC-VSHASTWKLLKPHLQVIIQDVIFP---------- 355 (1010)
T ss_pred -----H-HHHHHHHHHHHHHHH--HhcccCCHHHHHHHHHHHHHh-ccHHHHHHHhhhHHHHHHHHhhhh----------
Confidence 3 237777766665421 111111222222111110000 000112222222222222222222
Q ss_pred cccccccccccccccccccccCccccccccccccCCCCCCCCCCchHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHh
Q 001381 334 RTSSLGENMSSRAAFREIDQCDHSVVDSLKSEQNRNCPEDEGMDVPDILEEIIEILLSGLRDTDTVVRWSAAKGIGRITS 413 (1089)
Q Consensus 334 g~rsL~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~e~vE~iI~~ll~~L~d~dt~vR~saAK~l~rI~~ 413 (1089)
|. +. .++|+|.++ +.=.+.|..-.+-..|..++ |-+|.--+-.++.
T Consensus 356 ----lm-------c~--------------------~d~deelwe--~DP~EYiR~~~Di~ed~~sp-~~Aa~~~l~~~~~ 401 (1010)
T KOG1991|consen 356 ----LM-------CF--------------------NDEDEELWE--EDPYEYIRKKFDIFEDGYSP-DTAALDFLTTLVS 401 (1010)
T ss_pred ----hc-------CC--------------------CcccHHHHh--cCHHHHHHhcCchhcccCCC-cHHHHHHHHHHHH
Confidence 00 00 011112121 11222333333333332222 2234444455555
Q ss_pred hhCcchhhhHHHHHHhhcCC------C-CCCcchHHHHHHHHHHHhcCCCCCCcccchHHHHHHhhhhhccccccCCChh
Q 001381 414 CLTSSLSEEVFSSVLELFSP------G-EGDGSWHGGCLALAELARRGLLLPSSLPKVVPVIVKALHYDIRRGSHSVGSH 486 (1089)
Q Consensus 414 ~L~~~~a~~vi~~il~~l~~------~-~~~~~wHg~~LaLael~~~~ll~p~~l~~il~~i~~~L~f~~r~~~~svG~~ 486 (1089)
+=+++-..-++.++.+.|+. . .+...--|++.++|-++ +.+.-++.....+...+..-.|-.-++ --.+
T Consensus 402 KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~-~~L~K~s~~~~~mE~flv~hVfP~f~s---~~g~ 477 (1010)
T KOG1991|consen 402 KRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLA-SILLKKSPYKSQMEYFLVNHVFPEFQS---PYGY 477 (1010)
T ss_pred hcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHH-HHHccCCchHHHHHHHHHHHhhHhhcC---chhH
Confidence 55566666777888877752 2 22334468888888888 444444444444444333333322121 1145
Q ss_pred hhhhhhHHHHHhh-hccCccchhHHHHHHHHHHHHHHhc-CCCchhhHHHHHHHHHHhccc
Q 001381 487 VRDAAAYVCWAFG-RAYCHTDMRNILEQIAPHLLTVACY-DREVNCRRAAAAAFQENVGRQ 545 (1089)
Q Consensus 487 VRDAacfi~Wsla-R~~~~~~l~~~~~~l~~~Ll~~alf-D~e~~iRRaAsAAlQE~vGR~ 545 (1089)
.|--||++|--++ -.++- +-.-.=+.+++.+++- |++.=+|=-|.=|||-++--.
T Consensus 478 Lrarac~vl~~~~~~df~d----~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~ 534 (1010)
T KOG1991|consen 478 LRARACWVLSQFSSIDFKD----PNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQ 534 (1010)
T ss_pred HHHHHHHHHHHHHhccCCC----hHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcc
Confidence 7888888876665 23331 1122234556777777 999999999999999875443
No 91
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=86.72 E-value=49 Score=38.12 Aligned_cols=192 Identities=16% Similarity=0.085 Sum_probs=108.4
Q ss_pred HHHhcCCCchhhHHHHHHHHHHhcccCCCCCCccceecccccchhhhHHHHHHHHHHHHhhhcchHHHHHHHHhCccCCC
Q 001381 520 TVACYDREVNCRRAAAAAFQENVGRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNKICHW 599 (1089)
Q Consensus 520 ~~alfD~e~~iRRaAsAAlQE~vGR~g~~p~GI~il~~~d~~~v~~r~~a~~~va~~va~~~~Y~~~li~~Ll~~~l~h~ 599 (1089)
+..+.|+..-.|-+|.+++...+-.+=. ..++ ......|++.+.+ .+.--
T Consensus 49 Id~l~eK~~~~Re~aL~~l~~~l~~~~~--------------------------~d~v---~~~~~tL~~~~~k-~lkkg 98 (309)
T PF05004_consen 49 IDLLTEKSSSTREAALEALIRALSSRYL--------------------------PDFV---EDRRETLLDALLK-SLKKG 98 (309)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHhccc--------------------------HHHH---HHHHHHHHHHHHH-HhccC
Confidence 4667888888888888887665422200 0011 1234456777765 34333
Q ss_pred CHHHHHHHHHHHHHHHccC-----chhhHHHHHHHhccccCC--CChhhHHHHHHHHHHHHHHHhcccccCChhHHHHHH
Q 001381 600 DKVLRELAAEALSALVKYD-----PEYFANFILEKLTPFTLS--TDLCTRHGATLAAGEVVLALCKYDYALPADKQKIVA 672 (1089)
Q Consensus 600 D~~iR~laa~aL~~L~~~~-----~~~~~~~vlp~Ll~~l~~--~d~~~RHG~lLalaevl~~l~~~~~~~~~~~~~~i~ 672 (1089)
..+-+.+|+++++-++-.. .+.+...+.|.|.+-+.+ .....|-.++.|||-+..... .+.+....++
T Consensus 99 ~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~-----~d~~~~~~~~ 173 (309)
T PF05004_consen 99 KSEEQALAARALALLALTLGAGEDSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGG-----SDEEETEELM 173 (309)
T ss_pred CHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhc-----CChhHHHHHH
Confidence 3466789999999997662 245566677777665553 345677777777776654322 1233334334
Q ss_pred hhhHHHHhhhhccCcc----------hHHHHHHHHHHHHHhhhcCCCCc--hhhHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 001381 673 GIVPGIEKARLYRGKG----------GEIMRSAVSRFIECISLSFVSLP--EKTKRSLLDTLNENLRHPNSQIQNAAVKA 740 (1089)
Q Consensus 673 ~i~~~~~~~~l~r~~~----------gelir~a~~~lI~~ls~~~lp~~--~~~~~~~~~~L~~~L~~~~~~V~~aAa~A 740 (1089)
..++.++....-++.| +.++..| ..-+.-+. ..+|.. .+.....+..+-+.|.+++.+||.+|.++
T Consensus 174 ~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aA-L~aW~lLl-t~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEa 251 (309)
T PF05004_consen 174 ESLESIFLLSILKSDGNAPVVAAEDDAALVAAA-LSAWALLL-TTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEA 251 (309)
T ss_pred HHHHHHHHHHhcCcCCCcccccCCCccHHHHHH-HHHHHHHH-hcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 4444433221122211 2344444 33333333 233421 12334445567777899999999999999
Q ss_pred HHHHHHHh
Q 001381 741 LKPFVQTY 748 (1089)
Q Consensus 741 l~~l~~~y 748 (1089)
+.-++...
T Consensus 252 iAll~E~~ 259 (309)
T PF05004_consen 252 IALLYELA 259 (309)
T ss_pred HHHHHHHh
Confidence 98777654
No 92
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=86.24 E-value=0.91 Score=37.86 Aligned_cols=34 Identities=32% Similarity=0.474 Sum_probs=30.7
Q ss_pred chHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHH
Q 001381 378 VPDILEEIIEILLSGLRDTDTVVRWSAAKGIGRI 411 (1089)
Q Consensus 378 v~e~vE~iI~~ll~~L~d~dt~vR~saAK~l~rI 411 (1089)
..+.+.+++..|...|.|++..||..|+.+||+|
T Consensus 22 ~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 22 LQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 3468889999999999999999999999999986
No 93
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=85.36 E-value=1.1 Score=33.10 Aligned_cols=28 Identities=29% Similarity=0.285 Sum_probs=21.0
Q ss_pred HHHHHhCccCCCCHHHHHHHHHHHHHHHc
Q 001381 588 VDELLYNKICHWDKVLRELAAEALSALVK 616 (1089)
Q Consensus 588 i~~Ll~~~l~h~D~~iR~laa~aL~~L~~ 616 (1089)
++.+++ .+.|.+.++|+.|+++|+++++
T Consensus 2 lp~l~~-~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQ-LLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHH-HHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HcCCCCHHHHHHHHHHHHHHHh
Confidence 445554 5678999999999999998875
No 94
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=85.04 E-value=1.1e+02 Score=37.89 Aligned_cols=275 Identities=17% Similarity=0.151 Sum_probs=135.5
Q ss_pred HHHHHHHHHHHHHHHccC-chhhHHHHHHHhccccCCCChhhHHHHHHHHHHHHHHHhcccccCChhHHHHHHhhhHHHH
Q 001381 601 KVLRELAAEALSALVKYD-PEYFANFILEKLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPADKQKIVAGIVPGIE 679 (1089)
Q Consensus 601 ~~iR~laa~aL~~L~~~~-~~~~~~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~l~~~~~~~~~~~~~~i~~i~~~~~ 679 (1089)
..+.--+|+++..++..+ +..+....+..|-..+++..+..|..++--+.++.-..++....-..+ +-.++..-.
T Consensus 278 emV~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~e----vEsLIsd~N 353 (898)
T COG5240 278 EMVFLEAARAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKE----VESLISDEN 353 (898)
T ss_pred hhhhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChh----HHHHhhccc
Confidence 445556888888877655 444445555566566778888999998888888865543211100111 111111100
Q ss_pred hhhhccCcchHHHHHHHHHHHHHhhhcCCCCchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCcchhhh
Q 001381 680 KARLYRGKGGEIMRSAVSRFIECISLSFVSLPEKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGG 759 (1089)
Q Consensus 680 ~~~l~r~~~gelir~a~~~lI~~ls~~~lp~~~~~~~~~~~~L~~~L~~~~~~V~~aAa~Al~~l~~~y~~~~~~~~~~~ 759 (1089)
| .+-..|+-.|+.. ..++.++++...|-..+.+-++.-..-+.+|++.|+..+-++ ...
T Consensus 354 -----r----~IstyAITtLLKT-------Gt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k-----~~s 412 (898)
T COG5240 354 -----R----TISTYAITTLLKT-------GTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSK-----KLS 412 (898)
T ss_pred -----c----cchHHHHHHHHHc-------CchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHH-----HHH
Confidence 0 1222233333321 123444555554444434444444455677788777765322 134
Q ss_pred hHHHHHHHhC-CCChhhhhhHHHHhhccchHhhhhhHHHHHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHhhhcccc
Q 001381 760 ISLKYMEQLT-DPNPAIRRGSALALGVLPYELLANSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQSQ 838 (1089)
Q Consensus 760 ~v~~~~~~L~-s~~~~~r~G~a~aLG~lp~~~~~~~~~~i~~~L~~~~~~~~~~~~~d~e~R~~al~sL~~i~~~~g~~~ 838 (1089)
+++-+.+.|. .+..-..+...-|+.-+-.+.. ..-...+..||.-+ .|||--.-+++=|+- +|..+
T Consensus 413 ~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p-~skEraLe~LC~fI--------EDcey~~I~vrIL~i----LG~Eg 479 (898)
T COG5240 413 YLDFLGSSLLQEGGLEFKKYMVDAISDAMENDP-DSKERALEVLCTFI--------EDCEYHQITVRILGI----LGREG 479 (898)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHhhCc-hHHHHHHHHHHHHH--------hhcchhHHHHHHHHH----hcccC
Confidence 4444444442 2222223322233222111110 11234566666653 245555555554432 34432
Q ss_pred ccccccCCcchhhhhhhhHHHHHHHHHHhcccCCCCCCCCcchHHHHHHHHHHHHHHHHhhccCCCCCCCCCccccccCC
Q 001381 839 ENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEICTYILCKRDFVPSPEKPQEVKSELP 918 (1089)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~L~DYT~D~RGDVGSwVR~aa~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~ 918 (1089)
.. +.+++ .++..|++-++. + .+.||-+|+.++..+. +.
T Consensus 480 P~----a~~P~-----~yvrhIyNR~iL--E----------N~ivRsaAv~aLskf~--ln------------------- 517 (898)
T COG5240 480 PR----AKTPG-----KYVRHIYNRLIL--E----------NNIVRSAAVQALSKFA--LN------------------- 517 (898)
T ss_pred CC----CCCcc-----hHHHHHHHHHHH--h----------hhHHHHHHHHHHHHhc--cC-------------------
Confidence 11 11111 234455554432 1 3569999999997753 11
Q ss_pred CCccccccccCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHh
Q 001381 919 GNVTAEKTLFDANLATNLVAGIVKQAVEKMDKLREAAAKVLRRIL 963 (1089)
Q Consensus 919 ~~~~~~~~~~~~~~~~~l~~~llrq~~EkiD~vR~~A~~~L~~l~ 963 (1089)
..+.+.+ +.+...+-|.+-.+=|.||..|.-.+..+-
T Consensus 518 -----~~d~~~~---~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 518 -----ISDVVSP---QSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred -----ccccccH---HHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 1112223 344445555666788999999988776663
No 95
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.57 E-value=30 Score=40.27 Aligned_cols=219 Identities=18% Similarity=0.164 Sum_probs=116.0
Q ss_pred ccCCCCHHHHHHHHHHHHHHHccCch--hh---HHHHHHHhccccCCCChhhHHHHHHHHHHHHHHHhcccccCChhHHH
Q 001381 595 KICHWDKVLRELAAEALSALVKYDPE--YF---ANFILEKLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPADKQK 669 (1089)
Q Consensus 595 ~l~h~D~~iR~laa~aL~~L~~~~~~--~~---~~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~l~~~~~~~~~~~~~ 669 (1089)
.+..-|..+|.-+..|++.+.-.... .+ -..++|.|.+...+++.-++.-+-+|+.-+.... +-+.
T Consensus 216 ll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt---------~Yq~ 286 (550)
T KOG4224|consen 216 LLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDT---------EYQR 286 (550)
T ss_pred hhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccc---------hhhh
Confidence 44577888999999999988753221 11 1347788888777888888888888877664321 1111
Q ss_pred HHH--hhhHHHHhhhhccCcchHHHHHHHHHHHHHhhhcCCCCchh-hH-HHHHHHHHHhc-CCCcHHHHHHHHHHHHHH
Q 001381 670 IVA--GIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLPEK-TK-RSLLDTLNENL-RHPNSQIQNAAVKALKPF 744 (1089)
Q Consensus 670 ~i~--~i~~~~~~~~l~r~~~gelir~a~~~lI~~ls~~~lp~~~~-~~-~~~~~~L~~~L-~~~~~~V~~aAa~Al~~l 744 (1089)
.|. +-++.+. ++.+..-|.++.+.+. -|.+++. .|+..- +. ..|++.|-..| ...++++|..|++.+..+
T Consensus 287 eiv~ag~lP~lv--~Llqs~~~plilasVa-CIrnisi--hplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnL 361 (550)
T KOG4224|consen 287 EIVEAGSLPLLV--ELLQSPMGPLILASVA-CIRNISI--HPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNL 361 (550)
T ss_pred HHHhcCCchHHH--HHHhCcchhHHHHHHH-HHhhccc--ccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHH
Confidence 110 0111111 1223333444443321 2444443 133321 11 12222222222 467788999999999988
Q ss_pred HHHhhhccCcchhhhhHHHHHHHhCCCChhhhhhHHHHhhccchHh-hhhhH--HHHHHHHhhhccccCCCCCCCHHHHH
Q 001381 745 VQTYMVAADSGVVGGISLKYMEQLTDPNPAIRRGSALALGVLPYEL-LANSW--RDVLLKLCSCCLIEENPEDRDTEARV 821 (1089)
Q Consensus 745 ~~~y~~~~~~~~~~~~v~~~~~~L~s~~~~~r~G~a~aLG~lp~~~-~~~~~--~~i~~~L~~~~~~~~~~~~~d~e~R~ 821 (1089)
-..|-..-........++++...+.+.....+.-...+++.+...- .+..+ ..+++.|+.- . .....|.|-
T Consensus 362 Aasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~k~~lld~gi~~iLIp~-----t-~s~s~Ev~g 435 (550)
T KOG4224|consen 362 AASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDNDKEALLDSGIIPILIPW-----T-GSESEEVRG 435 (550)
T ss_pred hhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccccHHHHhhcCCcceeecc-----c-Cccchhhcc
Confidence 7754221100111456778888776665555544443433332111 01000 1233344333 2 456789999
Q ss_pred HHHHHHHHHHhh
Q 001381 822 NAVRGLVSVCET 833 (1089)
Q Consensus 822 ~al~sL~~i~~~ 833 (1089)
||..+|..+++.
T Consensus 436 NaAaAL~Nlss~ 447 (550)
T KOG4224|consen 436 NAAAALINLSSD 447 (550)
T ss_pred cHHHHHHhhhhh
Confidence 999999987653
No 96
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=83.54 E-value=4.3 Score=38.29 Aligned_cols=104 Identities=16% Similarity=0.102 Sum_probs=66.4
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCcchhhhhHHHHHHHhCCCChhhhhhHHHHhhccchHhhh--hh-H-HH
Q 001381 722 LNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLTDPNPAIRRGSALALGVLPYELLA--NS-W-RD 797 (1089)
Q Consensus 722 L~~~L~~~~~~V~~aAa~Al~~l~~~y~~~~~~~~~~~~v~~~~~~L~s~~~~~r~G~a~aLG~lp~~~~~--~~-~-~~ 797 (1089)
+.+.+.+.+..++..+..++..+....-...........++.+++.+.+.++..+...+.+|+.+-..-.. .. . ..
T Consensus 12 l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g 91 (120)
T cd00020 12 LVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAG 91 (120)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHHHCC
Confidence 44455677789999999998877642100000001147788888888888899999899998888432211 11 1 12
Q ss_pred HHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHH
Q 001381 798 VLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVC 831 (1089)
Q Consensus 798 i~~~L~~~~~~~~~~~~~d~e~R~~al~sL~~i~ 831 (1089)
++..|++.+ ...+.+.|..|+..|..++
T Consensus 92 ~l~~l~~~l------~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 92 GVPKLVNLL------DSSNEDIQKNATGALSNLA 119 (120)
T ss_pred ChHHHHHHH------hcCCHHHHHHHHHHHHHhh
Confidence 455565554 2347899999999888765
No 97
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.34 E-value=19 Score=45.90 Aligned_cols=152 Identities=16% Similarity=0.179 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhCcchhhhHHHHHHhhcCCC-CCCc-----chHHHHHHHHHHHhc
Q 001381 380 DILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSLSEEVFSSVLELFSPG-EGDG-----SWHGGCLALAELARR 453 (1089)
Q Consensus 380 e~vE~iI~~ll~~L~d~dt~vR~saAK~l~rI~~~L~~~~a~~vi~~il~~l~~~-~~~~-----~wHg~~LaLael~~~ 453 (1089)
..-|.++...++.|+|.|+.|=.++=+|+.-+++.-|+.+.+.+.+.-.+.-+.. .++. +.-....+++|+...
T Consensus 764 ~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~ 843 (982)
T KOG4653|consen 764 IQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFK 843 (982)
T ss_pred hhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHH
Confidence 3456788999999999999999999999999999988766555555444332222 1111 122245555555443
Q ss_pred CCCCCCcccchHHHHHHhhhhhccccccCCChhhhhhhhHHHHHhhhccCccchhHHHHHHHHHHHHHHhcCCCchhhHH
Q 001381 454 GLLLPSSLPKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRA 533 (1089)
Q Consensus 454 ~ll~p~~l~~il~~i~~~L~f~~r~~~~svG~~VRDAacfi~WslaR~~~~~~l~~~~~~l~~~Ll~~alfD~e~~iRRa 533 (1089)
+...++...++++. . + -..-|=+||=+.--+.+.... .....+..++..++...--|+++-+|||
T Consensus 844 ------y~~~Li~tfl~gvr----e---p-d~~~RaSS~a~lg~Lcq~~a~-~vsd~~~ev~~~Il~l~~~d~s~~vRRa 908 (982)
T KOG4653|consen 844 ------YKAVLINTFLSGVR----E---P-DHEFRASSLANLGQLCQLLAF-QVSDFFHEVLQLILSLETTDGSVLVRRA 908 (982)
T ss_pred ------HHHHHHHHHHHhcC----C---c-hHHHHHhHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHccCCchhhHHH
Confidence 23444555555442 1 1 123466666665555555442 1223677777888888888999999999
Q ss_pred HHHHHHHHhcccC
Q 001381 534 AAAAFQENVGRQG 546 (1089)
Q Consensus 534 AsAAlQE~vGR~g 546 (1089)
|.-.+-+++--.|
T Consensus 909 Av~li~~lL~~tg 921 (982)
T KOG4653|consen 909 AVHLLAELLNGTG 921 (982)
T ss_pred HHHHHHHHHhccc
Confidence 9999888865554
No 98
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=82.93 E-value=45 Score=41.85 Aligned_cols=137 Identities=19% Similarity=0.229 Sum_probs=84.9
Q ss_pred hhhHHHHHHHhC----CCChhhhhhHHHHhhccchHhhhh-----------------hHHHHHHHHhhhccccCCCCCCC
Q 001381 758 GGISLKYMEQLT----DPNPAIRRGSALALGVLPYELLAN-----------------SWRDVLLKLCSCCLIEENPEDRD 816 (1089)
Q Consensus 758 ~~~v~~~~~~L~----s~~~~~r~G~a~aLG~lp~~~~~~-----------------~~~~i~~~L~~~~~~~~~~~~~d 816 (1089)
.++++.+...++ ..++..+..+.+++|++-...... ....+...|..+. +..|
T Consensus 430 ~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~------~~~~ 503 (618)
T PF01347_consen 430 EELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAV------SRGD 503 (618)
T ss_dssp HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHH------HTT-
T ss_pred HHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHh------hccC
Confidence 566666666654 245667778888888885443222 1122333333221 3457
Q ss_pred HHHHHHHHHHHHHHHhhhccccccccccCCcchhhhhhhhHHHHHHHHHHhcccCCCCCCCCcchHHHHHHHHHHHHHHH
Q 001381 817 TEARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEICTY 896 (1089)
Q Consensus 817 ~e~R~~al~sL~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~L~DYT~D~RGDVGSwVR~aa~~~l~~l~~ 896 (1089)
.+.+.-+++||+.+ |. ..+++.|...+.+-. ++-..+|.+|+.|+..+.
T Consensus 504 ~~~~~~~LkaLgN~----g~---------------------~~~i~~l~~~i~~~~-----~~~~~~R~~Ai~Alr~~~- 552 (618)
T PF01347_consen 504 EEEKIVYLKALGNL----GH---------------------PESIPVLLPYIEGKE-----EVPHFIRVAAIQALRRLA- 552 (618)
T ss_dssp HHHHHHHHHHHHHH----T----------------------GGGHHHHHTTSTTSS------S-HHHHHHHHHTTTTGG-
T ss_pred HHHHHHHHHHhhcc----CC---------------------chhhHHHHhHhhhcc-----ccchHHHHHHHHHHHHHh-
Confidence 79999999999875 31 124455555443321 677889999999986431
Q ss_pred HhhccCCCCCCCCCccccccCCCCccccccccCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 001381 897 ILCKRDFVPSPEKPQEVKSELPGNVTAEKTLFDANLATNLVAGIVKQAVEKMDKLREAAAKVLRRI 962 (1089)
Q Consensus 897 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~llrq~~EkiD~vR~~A~~~L~~l 962 (1089)
...++.+++++..|.+.-.|.-+ ||..|..+|.+-
T Consensus 553 ------------------------------~~~~~~v~~~l~~I~~n~~e~~E-vRiaA~~~lm~~ 587 (618)
T PF01347_consen 553 ------------------------------KHCPEKVREILLPIFMNTTEDPE-VRIAAYLILMRC 587 (618)
T ss_dssp ------------------------------GT-HHHHHHHHHHHHH-TTS-HH-HHHHHHHHHHHT
T ss_pred ------------------------------hcCcHHHHHHHHHHhcCCCCChh-HHHHHHHHHHhc
Confidence 12477899999999999999998 999998776654
No 99
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=82.12 E-value=45 Score=42.04 Aligned_cols=212 Identities=13% Similarity=0.051 Sum_probs=109.1
Q ss_pred HhhcCCCChhHHHHHHHHHHHHHhhhCcc-hhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHHhcCCCCCCcccchHHHH
Q 001381 390 LSGLRDTDTVVRWSAAKGIGRITSCLTSS-LSEEVFSSVLELFSPGEGDGSWHGGCLALAELARRGLLLPSSLPKVVPVI 468 (1089)
Q Consensus 390 l~~L~d~dt~vR~saAK~l~rI~~~L~~~-~a~~vi~~il~~l~~~~~~~~wHg~~LaLael~~~~ll~p~~l~~il~~i 468 (1089)
|+.|--+|+.=-.+--|+|.++...+|.. +..-|++.+.+.|.+..--+..-=..+.+||-.-.. +..+.++|.+
T Consensus 279 LD~l~~kdn~qKs~Flk~Ls~~ip~fp~rv~~~kiLP~L~~el~n~~~vp~~LP~v~~i~~~~s~~----~~~~~~~p~l 354 (700)
T KOG2137|consen 279 LDDLPQKDNSQKSSFLKGLSKLIPTFPARVLFQKILPTLVAELVNTKMVPIVLPLVLLIAEGLSQN----EFGPKMLPAL 354 (700)
T ss_pred cccccccCcHHHHHHHHHHHHhhccCCHHHHHHhhhhHHHHHhccccccccccchhhhhhhccchh----hhhhhhhHHH
Confidence 33444456666666677777777766654 344566666665543321111111222233221111 1223344444
Q ss_pred HHhhhhhccccccCCChhhhhhhhHHH-HH--hhhccCccchhHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHhccc
Q 001381 469 VKALHYDIRRGSHSVGSHVRDAAAYVC-WA--FGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAAAAAFQENVGRQ 545 (1089)
Q Consensus 469 ~~~L~f~~r~~~~svG~~VRDAacfi~-Ws--laR~~~~~~l~~~~~~l~~~Ll~~alfD~e~~iRRaAsAAlQE~vGR~ 545 (1089)
...+.+ +.-.++.-|++ -. |.+...+++ +.+=+..+|..++-|.++.|--.+... .
T Consensus 355 ~pi~~~----------~~~~~~~l~i~e~mdlL~~Kt~~e~----~~~~IlplL~~S~~~~~~~iQ~~~L~~-------l 413 (700)
T KOG2137|consen 355 KPIYSA----------SDPKQALLFILENMDLLKEKTPPEE----VKEKILPLLYRSLEDSDVQIQELALQI-------L 413 (700)
T ss_pred HHHhcc----------CCcccchhhHHhhHHHHHhhCChHH----HHHHHHHHHHHHhcCcchhhHHHHHHh-------h
Confidence 433322 11122222222 22 444444433 333334578888888888876543332 2
Q ss_pred CCCCCCccceecccccchhhhHHHHHHHHHHHHhhhcchHHHHHHHHhCccCCCCHHHHHHHHHHHHHHHccCchhhHHH
Q 001381 546 GNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNKICHWDKVLRELAAEALSALVKYDPEYFANF 625 (1089)
Q Consensus 546 g~~p~GI~il~~~d~~~v~~r~~a~~~va~~va~~~~Y~~~li~~Ll~~~l~h~D~~iR~laa~aL~~L~~~~~~~~~~~ 625 (1089)
+++ ...+|| +--.++|+.-|.+-.+.|-+..++.-+.-|++.+.+....+..-.
T Consensus 414 ptv------~e~iD~--------------------~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~~v~d 467 (700)
T KOG2137|consen 414 PTV------AESIDV--------------------PFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDKAAVLD 467 (700)
T ss_pred hHH------HHhccH--------------------HHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 332 112221 222445666666555668899999999999999996433333323
Q ss_pred HHHHhccccCCCChhhHHHHHHHHHHH
Q 001381 626 ILEKLTPFTLSTDLCTRHGATLAAGEV 652 (1089)
Q Consensus 626 vlp~Ll~~l~~~d~~~RHG~lLalaev 652 (1089)
.++-++++....|..+.||.+.....+
T Consensus 468 ~~lpi~~~~~~~dp~iv~~~~~i~~~l 494 (700)
T KOG2137|consen 468 ELLPILKCIKTRDPAIVMGFLRIYEAL 494 (700)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 334444677788889889866544433
No 100
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=81.49 E-value=52 Score=42.23 Aligned_cols=142 Identities=13% Similarity=0.122 Sum_probs=84.4
Q ss_pred HHHHHHhccccCCCChhhHHHHHHHHHHHHHHHhcccccCChhHHHHHHhhhHHHHhhhhccCcchHHHHHHHHHHHHHh
Q 001381 624 NFILEKLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPADKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECI 703 (1089)
Q Consensus 624 ~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~l~~~~~~~~~~~~~~i~~i~~~~~~~~l~r~~~gelir~a~~~lI~~l 703 (1089)
+..+|.+++...+.|.+.+-=..+.+=-.. +..++.....+..+...+.+ ..+.+|..+.+....+
T Consensus 54 ssLf~dViK~~~trd~ElKrL~ylYl~~ya-------k~~P~~~lLavNti~kDl~d-------~N~~iR~~AlR~ls~l 119 (757)
T COG5096 54 SSLFPDVIKNVATRDVELKRLLYLYLERYA-------KLKPELALLAVNTIQKDLQD-------PNEEIRGFALRTLSLL 119 (757)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-------ccCHHHHHHHHHHHHhhccC-------CCHHHHHHHHHHHHhc
Confidence 345666666666666666653222221111 11123333333333333332 3567777777776543
Q ss_pred hhcCCCCchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCcchhhh-hHHHHHHHhCCCChhhhhhHHHH
Q 001381 704 SLSFVSLPEKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGG-ISLKYMEQLTDPNPAIRRGSALA 782 (1089)
Q Consensus 704 s~~~lp~~~~~~~~~~~~L~~~L~~~~~~V~~aAa~Al~~l~~~y~~~~~~~~~~~-~v~~~~~~L~s~~~~~r~G~a~a 782 (1089)
-. .++...+.+.+..++.|+...||..|+-|+..+++. ++.-..+. .+..+-..+.+.+|.+.+.+..+
T Consensus 120 ~~------~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l----d~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~s 189 (757)
T COG5096 120 RV------KELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL----DKDLYHELGLIDILKELVADSDPIVIANALAS 189 (757)
T ss_pred Ch------HHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc----CHhhhhcccHHHHHHHHhhCCCchHHHHHHHH
Confidence 21 346678888899999999999999999998877653 10001122 34444445568888888888888
Q ss_pred hhccchH
Q 001381 783 LGVLPYE 789 (1089)
Q Consensus 783 LG~lp~~ 789 (1089)
|..+...
T Consensus 190 l~~i~~e 196 (757)
T COG5096 190 LAEIDPE 196 (757)
T ss_pred HHHhchh
Confidence 8777655
No 101
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.21 E-value=1.8e+02 Score=37.59 Aligned_cols=60 Identities=20% Similarity=0.059 Sum_probs=44.9
Q ss_pred CCCHHHHHHHHHHHHHHHccCchhhHHHHHHHhccccCCCChhhHHHHHHHHHHHHHHHh
Q 001381 598 HWDKVLRELAAEALSALVKYDPEYFANFILEKLTPFTLSTDLCTRHGATLAAGEVVLALC 657 (1089)
Q Consensus 598 h~D~~iR~laa~aL~~L~~~~~~~~~~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~l~ 657 (1089)
+.-..+.+.-++||.-+.+.|--.--++.+|.+..++.+.|.++--|++-..-.+...++
T Consensus 99 ~s~~~iQ~qlseal~~Ig~~DFP~kWptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~R 158 (960)
T KOG1992|consen 99 SSPFNIQKQLSEALSLIGKRDFPDKWPTLLPDLVARLSSGDFNVINGVLVTAHSIFKRYR 158 (960)
T ss_pred cCcHHHHHHHHHHHHHHhccccchhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcC
Confidence 566788888899999999877333345689999999999999988876554444665543
No 102
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=80.41 E-value=1.2e+02 Score=35.04 Aligned_cols=191 Identities=20% Similarity=0.202 Sum_probs=100.5
Q ss_pred HHHhccccCCCChhhHHHHHHHHHHHHHHHhcccccCChhHHHHHHhhhHHHHhhhhccCcchHHHHHHHHHHHHHhhhc
Q 001381 627 LEKLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPADKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISLS 706 (1089)
Q Consensus 627 lp~Ll~~l~~~d~~~RHG~lLalaevl~~l~~~~~~~~~~~~~~i~~i~~~~~~~~l~r~~~gelir~a~~~lI~~ls~~ 706 (1089)
|...+..+.......|..++-++..++..-. ..+....+...++..+++ .+-+|++.|. ..+++++.-++..
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~-----~~d~v~~~~~tL~~~~~k-~lkkg~~~E~--~lA~~~l~Ll~lt 116 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRY-----LPDFVEDRRETLLDALLK-SLKKGKSEEQ--ALAARALALLALT 116 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc-----cHHHHHHHHHHHHHHHHH-HhccCCHHHH--HHHHHHHHHHhhh
Confidence 3444555555557788877766666654311 112233334444555442 3446665332 3466777766542
Q ss_pred --CCCCchhhHHHHHHHHHHhcCCCcH--HHHHHHHHHHHHHHHHhhhccCcchhh---hhHH-HHHHH-hC-CCC----
Q 001381 707 --FVSLPEKTKRSLLDTLNENLRHPNS--QIQNAAVKALKPFVQTYMVAADSGVVG---GISL-KYMEQ-LT-DPN---- 772 (1089)
Q Consensus 707 --~lp~~~~~~~~~~~~L~~~L~~~~~--~V~~aAa~Al~~l~~~y~~~~~~~~~~---~~v~-~~~~~-L~-s~~---- 772 (1089)
.-+...++.......|...+.+... .+|.+++.||.-. .|++..+.+... +.+. -|... ++ +++
T Consensus 117 lg~g~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~--~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~ 194 (309)
T PF05004_consen 117 LGAGEDSEEIFEELKPVLKRILTDSSASPKARAACLEALAIC--TFVGGSDEEETEELMESLESIFLLSILKSDGNAPVV 194 (309)
T ss_pred cCCCccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHH--HHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccc
Confidence 1112234555555556555555544 4455555566432 233332222233 2222 12211 22 111
Q ss_pred ---------hhhhhhHHHHhhccchHhhhhhHHHHHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHhh
Q 001381 773 ---------PAIRRGSALALGVLPYELLANSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCET 833 (1089)
Q Consensus 773 ---------~~~r~G~a~aLG~lp~~~~~~~~~~i~~~L~~~~~~~~~~~~~d~e~R~~al~sL~~i~~~ 833 (1089)
.++-.+.++.+..+|...+.......++.|...+ +..|.+.|.+|-++|+-++..
T Consensus 195 ~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL------~s~d~~VRiAAGEaiAll~E~ 258 (309)
T PF05004_consen 195 AAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELL------DSDDVDVRIAAGEAIALLYEL 258 (309)
T ss_pred cCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHh------cCCCHHHHHHHHHHHHHHHHH
Confidence 2346677777777887655555555666666554 456899999999999987653
No 103
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=80.15 E-value=49 Score=42.98 Aligned_cols=192 Identities=19% Similarity=0.216 Sum_probs=107.4
Q ss_pred hhhHHHHHHHhccccCCCChhhHHHHHHHHHHHHHHHhcccccCChhHHHHHHhhhHHHHhhhhccCcchHHHHH-HHHH
Q 001381 620 EYFANFILEKLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPADKQKIVAGIVPGIEKARLYRGKGGEIMRS-AVSR 698 (1089)
Q Consensus 620 ~~~~~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~l~~~~~~~~~~~~~~i~~i~~~~~~~~l~r~~~gelir~-a~~~ 698 (1089)
..+.+.+-|.+...+.+.+|-.|-=++-.+-+++ .+..... ..... +++..+.+.++ +....... -+..
T Consensus 248 ~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l---~e~~~~~-~~~~~---~ll~~~~ki~~---kDaN~~v~~~aa~ 317 (815)
T KOG1820|consen 248 VDILSKITKNLETEMLSKKWKDRKEALEELVAIL---EEAKKEI-VKGYT---GLLGILLKIRL---KDANINVVMLAAQ 317 (815)
T ss_pred hhhhhhcChHHHHhhhccchHHHHHHHHHHHHHH---hcccccc-ccCcc---hHHHHHHHHhc---cCcchhHHHHHHH
Confidence 3345556666667778888888875555544444 3222001 11111 11111111111 11222111 1222
Q ss_pred HHHHhhhcCCCC-chhhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCcchhhhhHHHHHHHhCCCChhhhh
Q 001381 699 FIECISLSFVSL-PEKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLTDPNPAIRR 777 (1089)
Q Consensus 699 lI~~ls~~~lp~-~~~~~~~~~~~L~~~L~~~~~~V~~aAa~Al~~l~~~y~~~~~~~~~~~~v~~~~~~L~s~~~~~r~ 777 (1089)
.|+.++. .++. ...........+.+++...-..+++++.+|+.+++..| ....+.+..+..++..++..+.
T Consensus 318 ~l~~ia~-~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~-------~l~~~~~~I~e~lk~knp~~k~ 389 (815)
T KOG1820|consen 318 ILELIAK-KLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNST-------PLSKMSEAILEALKGKNPQIKG 389 (815)
T ss_pred HHHHHHH-hcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcc-------cHHHHHHHHHHHhcCCChhhHH
Confidence 3333332 1111 12233445555777788999999999999998888743 2356667777778888888887
Q ss_pred hHHHHhhccchHh-----hhhhHHHHHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHhhhc
Q 001381 778 GSALALGVLPYEL-----LANSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLT 835 (1089)
Q Consensus 778 G~a~aLG~lp~~~-----~~~~~~~i~~~L~~~~~~~~~~~~~d~e~R~~al~sL~~i~~~~g 835 (1089)
+-...++-.-... .......++..++..+ .+.+.+.|.+|..+++.+...+|
T Consensus 390 ~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~------~D~~~~VR~Aa~e~~~~v~k~~G 446 (815)
T KOG1820|consen 390 ECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHI------NDTDKDVRKAALEAVAAVMKVHG 446 (815)
T ss_pred HHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhc------cCCcHHHHHHHHHHHHHHHHHhh
Confidence 7666655443222 2233344455554443 57899999999999999887766
No 104
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=77.94 E-value=1.9e+02 Score=35.94 Aligned_cols=274 Identities=16% Similarity=0.158 Sum_probs=144.7
Q ss_pred hHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhh-hCcchhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHHhcCCCC
Q 001381 379 PDILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSC-LTSSLSEEVFSSVLELFSPGEGDGSWHGGCLALAELARRGLLL 457 (1089)
Q Consensus 379 ~e~vE~iI~~ll~~L~d~dt~vR~saAK~l~rI~~~-L~~~~a~~vi~~il~~l~~~~~~~~wHg~~LaLael~~~~ll~ 457 (1089)
+|.-|.|=...+..|+.+.+..--+||..++-|+.- ||...-..+...+...........--...++++++.|-.-.
T Consensus 89 ~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~-- 166 (858)
T COG5215 89 HESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEA-- 166 (858)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccC--
Confidence 477788888999999999999999999999999876 77666666666666655433322223335666666665443
Q ss_pred CCcccc----h---------------------HHHHHHhhhhhc-------cccc-cCC---Chhhhh----hhhHHHHH
Q 001381 458 PSSLPK----V---------------------VPVIVKALHYDI-------RRGS-HSV---GSHVRD----AAAYVCWA 497 (1089)
Q Consensus 458 p~~l~~----i---------------------l~~i~~~L~f~~-------r~~~-~sv---G~~VRD----Aacfi~Ws 497 (1089)
|+-+-. + +..+..+|-|-+ .|.. .++ -+|-.| +|.|+|-.
T Consensus 167 Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~ 246 (858)
T COG5215 167 PEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLN 246 (858)
T ss_pred HHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHH
Confidence 221111 1 111222222211 1110 000 011122 25566532
Q ss_pred --hhhccCccchhHHHHHHHHHHHHHHhcCCCchhhHHHHHHH----HHHh-ccc--CCCC------CCccceec-----
Q 001381 498 --FGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAAAAAF----QENV-GRQ--GNYP------HGIDIVNT----- 557 (1089)
Q Consensus 498 --laR~~~~~~l~~~~~~l~~~Ll~~alfD~e~~iRRaAsAAl----QE~v-GR~--g~~p------~GI~il~~----- 557 (1089)
+.=.|+ -+++|+++..-.|.....+.++--|---|.+=. -|-+ |-. ..+| ||...-..
T Consensus 247 kim~LyY~--fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP 324 (858)
T COG5215 247 KIMMLYYK--FMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLP 324 (858)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHH
Confidence 112233 356788888888877777776655543332211 1111 221 1122 45422111
Q ss_pred ----------cccc----chhhhHHHHHHHHHHHHhhhcchHHHHHHHHhCccCCCCHHHHHHHHHHHHHHHccCchhhH
Q 001381 558 ----------ADYF----SLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNKICHWDKVLRELAAEALSALVKYDPEYFA 623 (1089)
Q Consensus 558 ----------~d~~----~v~~r~~a~~~va~~va~~~~Y~~~li~~Ll~~~l~h~D~~iR~laa~aL~~L~~~~~~~~~ 623 (1089)
.||+ .++.-..+-+++-.++.+- ...++++. .+...+++.|-.-|+.|+-|+|.+...--+.+.
T Consensus 325 ~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd-~i~~pVl~-FvEqni~~~~w~nreaavmAfGSvm~gp~~~~l 402 (858)
T COG5215 325 ELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGD-KIMRPVLG-FVEQNIRSESWANREAAVMAFGSVMHGPCEDCL 402 (858)
T ss_pred HHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhh-HhHHHHHH-HHHHhccCchhhhHHHHHHHhhhhhcCccHHHH
Confidence 2333 3444444444433333221 12223222 233478888889999999999998765444444
Q ss_pred HHHHHHhccc----cCCCChhhHHHHHHHHHHHHHHHhc
Q 001381 624 NFILEKLTPF----TLSTDLCTRHGATLAAGEVVLALCK 658 (1089)
Q Consensus 624 ~~vlp~Ll~~----l~~~d~~~RHG~lLalaevl~~l~~ 658 (1089)
..++|+.++. ..+.-+.++.-...|++.+.+.+..
T Consensus 403 T~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~ 441 (858)
T COG5215 403 TKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAM 441 (858)
T ss_pred HhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHH
Confidence 4455555543 3444456666666777777666543
No 105
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=77.83 E-value=2.4e+02 Score=37.11 Aligned_cols=147 Identities=19% Similarity=0.198 Sum_probs=89.9
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHHHhhhCcchhhhHHHHHHhhcCCC-----CC-----------------CcchHHH
Q 001381 386 IEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSLSEEVFSSVLELFSPG-----EG-----------------DGSWHGG 443 (1089)
Q Consensus 386 I~~ll~~L~d~dt~vR~saAK~l~rI~~~L~~~~a~~vi~~il~~l~~~-----~~-----------------~~~wHg~ 443 (1089)
-+.+...--|+-..||..|+-++.+|..--..-++.+|+.+.++...+. ++ ...|
T Consensus 474 ~~~~~~rClDkaaavR~~al~s~tk~l~l~~~~~~~sIl~~~inS~~d~~fs~ves~~~~~~~~~~~~s~~~~tt~~--- 550 (1529)
T KOG0413|consen 474 YNIVYMRCLDKAAAVRLHALNSLTKILQLQSHREAFSILCATINSEMDEKFSAVESLEDLNVSGKAPSSKTKKTTDL--- 550 (1529)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccchHHHHHHhcCCccccchhHHHhchhhhhcccCcccccccchhh---
Confidence 3455566679999999999999999999988888889988888754321 00 0001
Q ss_pred HHHHHHHHhcC-CCCC----Cccc-chHHHHHHhhhhhccccccCCChhhhhhhhHHHHHhhhccCccchhHHHHHHHHH
Q 001381 444 CLALAELARRG-LLLP----SSLP-KVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPH 517 (1089)
Q Consensus 444 ~LaLael~~~~-ll~p----~~l~-~il~~i~~~L~f~~r~~~~svG~~VRDAacfi~WslaR~~~~~~l~~~~~~l~~~ 517 (1089)
++--.++..-. .-+- .+.. .|+..| .||++.--..+||-+||-..=|.-..-+-+.+.+.+ ..
T Consensus 551 l~~~~~ii~d~~~~~~~~ge~~~e~~V~~mi-------~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~~~~fe~~----L~ 619 (1529)
T KOG0413|consen 551 LLDEQQIIQDFKLKLMNKGETRVEKDVVYMI-------VRRLSTDDKAPVKKAACSLLKSYLSYCDEASKFEVV----LS 619 (1529)
T ss_pred cCcchhhhhhcchhhhhccccHHHHHHHHHH-------HHHhccCCCcccchhhHHHHHHHHhccchhhcchhH----HH
Confidence 00000000000 0000 0111 122333 344543335789999999876665444433333332 34
Q ss_pred HHHHHhcCCCchhhHHHHHHHHHHhcccC
Q 001381 518 LLTVACYDREVNCRRAAAAAFQENVGRQG 546 (1089)
Q Consensus 518 Ll~~alfD~e~~iRRaAsAAlQE~vGR~g 546 (1089)
+|-.-|=||-+.+|+-+.-+|.|+.-|..
T Consensus 620 iLq~lCrd~~vsvrk~~~~Sltel~~~~p 648 (1529)
T KOG0413|consen 620 ILQMLCRDRMVSVRKTGADSLTELMLRDP 648 (1529)
T ss_pred HHHHHhcCcchHHHHHHHHHHHHHHhhCc
Confidence 55667899999999999999999988774
No 106
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=77.15 E-value=61 Score=36.52 Aligned_cols=106 Identities=14% Similarity=0.124 Sum_probs=65.1
Q ss_pred HHhhcCCCChhHHHHHHHHHHHHHhhhCcch-hhh----HHHHHHhhcCCCCCCcchHHHHHHHHHHHhcCCCCCCcccc
Q 001381 389 LLSGLRDTDTVVRWSAAKGIGRITSCLTSSL-SEE----VFSSVLELFSPGEGDGSWHGGCLALAELARRGLLLPSSLPK 463 (1089)
Q Consensus 389 ll~~L~d~dt~vR~saAK~l~rI~~~L~~~~-a~~----vi~~il~~l~~~~~~~~wHg~~LaLael~~~~ll~p~~l~~ 463 (1089)
|=..|.+.|..+|-.|=+.|+.+.+++|++. ..+ +++...+.+ ++....++++-++..|.+..-..++....
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl---~D~~~~~~~l~gl~~L~~~~~~~~~~~~~ 80 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRL---DDHACVQPALKGLLALVKMKNFSPESAVK 80 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHh---ccHhhHHHHHHHHHHHHhCcCCChhhHHH
Confidence 4457889999999999999999999999763 333 444444444 33344555566666666665544445444
Q ss_pred hHHHHHHhhhhhccccccCCChhhhhhhhHHHHHhhhccC
Q 001381 464 VVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYC 503 (1089)
Q Consensus 464 il~~i~~~L~f~~r~~~~svG~~VRDAacfi~WslaR~~~ 503 (1089)
++..+.+-... .+--..+|-..-=++..+...+.
T Consensus 81 i~~~l~~~~~~------q~~~q~~R~~~~~ll~~l~~~~~ 114 (262)
T PF14500_consen 81 ILRSLFQNVDV------QSLPQSTRYAVYQLLDSLLENHR 114 (262)
T ss_pred HHHHHHHhCCh------hhhhHHHHHHHHHHHHHHHHHhH
Confidence 44443321111 22335567666666677776665
No 107
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=76.59 E-value=2e+02 Score=35.65 Aligned_cols=473 Identities=16% Similarity=0.173 Sum_probs=234.5
Q ss_pred hhhHHHHHHhhcCCC-C--CCcch-----HHHHHHH-HHHHhcCCCCCCcccchHHHHHHhhhhhccccccCCChhhhhh
Q 001381 420 SEEVFSSVLELFSPG-E--GDGSW-----HGGCLAL-AELARRGLLLPSSLPKVVPVIVKALHYDIRRGSHSVGSHVRDA 490 (1089)
Q Consensus 420 a~~vi~~il~~l~~~-~--~~~~w-----Hg~~LaL-ael~~~~ll~p~~l~~il~~i~~~L~f~~r~~~~svG~~VRDA 490 (1089)
+.+|++.++++|..+ + .+..| -|.||-| |++....++ ..|+..+.+.+.-+. -+=|||
T Consensus 319 v~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~-----~pVl~FvEqni~~~~--------w~nrea 385 (858)
T COG5215 319 VADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIM-----RPVLGFVEQNIRSES--------WANREA 385 (858)
T ss_pred HHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhH-----HHHHHHHHHhccCch--------hhhHHH
Confidence 456999999988652 2 34556 3677765 455544332 124444444433333 345899
Q ss_pred hhHHHHHhhhccCccchhHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHhcccC-CC-----CCCc-------cceec
Q 001381 491 AAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAAAAAFQENVGRQG-NY-----PHGI-------DIVNT 557 (1089)
Q Consensus 491 acfi~WslaR~~~~~~l~~~~~~l~~~Ll~~alfD~e~~iRRaAsAAlQE~vGR~g-~~-----p~GI-------~il~~ 557 (1089)
|--..-|+-..-+..-+.+++.+..+.++ +-.-|+-+-+...+.-+| ||.. .+ |.|- .++-.
T Consensus 386 avmAfGSvm~gp~~~~lT~~V~qalp~i~-n~m~D~~l~vk~ttAwc~----g~iad~va~~i~p~~Hl~~~vsa~liGl 460 (858)
T COG5215 386 AVMAFGSVMHGPCEDCLTKIVPQALPGIE-NEMSDSCLWVKSTTAWCF----GAIADHVAMIISPCGHLVLEVSASLIGL 460 (858)
T ss_pred HHHHhhhhhcCccHHHHHhhHHhhhHHHH-HhcccceeehhhHHHHHH----HHHHHHHHHhcCccccccHHHHHHHhhh
Confidence 88888888777776778889988888865 445599888887766664 6652 11 2221 11111
Q ss_pred ccc-cchhhhHHHHHHHHHHHH-------hh-hcchHHHHHHHHh-CccCCCCHHHHHHHHHHHHHHHccCchhhHHH--
Q 001381 558 ADY-FSLSSRVYSYLHVAVFIA-------QY-EGYLYPFVDELLY-NKICHWDKVLRELAAEALSALVKYDPEYFANF-- 625 (1089)
Q Consensus 558 ~d~-~~v~~r~~a~~~va~~va-------~~-~~Y~~~li~~Ll~-~~l~h~D~~iR~laa~aL~~L~~~~~~~~~~~-- 625 (1089)
.|- +-+.|-..++......++ .+ -.|...+++.|++ ..+...|...|--+-.|||.|....|..+.+.
T Consensus 461 ~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a 540 (858)
T COG5215 461 MDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILA 540 (858)
T ss_pred hccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHH
Confidence 222 122233333333322222 11 2456789999997 34568899999999999999998887644321
Q ss_pred -HHHHhcccc-----------CCCC---hhhHHHHH-HHHHHHHHHHhcccccCChhHHHHHHhhhHHHHhhhhccCcch
Q 001381 626 -ILEKLTPFT-----------LSTD---LCTRHGAT-LAAGEVVLALCKYDYALPADKQKIVAGIVPGIEKARLYRGKGG 689 (1089)
Q Consensus 626 -vlp~Ll~~l-----------~~~d---~~~RHG~l-Lalaevl~~l~~~~~~~~~~~~~~i~~i~~~~~~~~l~r~~~g 689 (1089)
+....+.++ ...| +..-+..+ --+..++..... .-+...+.+++++-.+.+..- ...--
T Consensus 541 ~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~----~ie~v~D~lm~Lf~r~les~~-~t~~~ 615 (858)
T COG5215 541 GFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRR----DIEDVEDQLMELFIRILESTK-PTTAF 615 (858)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCC----CcccHHHHHHHHHHHHHhccC-Cchhh
Confidence 111111111 1111 11111112 223444433221 113344556666666554320 00011
Q ss_pred HHHHHHHHHHHHHhhhcCCCCchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCcchhhhhHHHHHHHhC
Q 001381 690 EIMRSAVSRFIECISLSFVSLPEKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLT 769 (1089)
Q Consensus 690 elir~a~~~lI~~ls~~~lp~~~~~~~~~~~~L~~~L~~~~~~V~~aAa~Al~~l~~~y~~~~~~~~~~~~v~~~~~~L~ 769 (1089)
+-+..|++.+-.++.. .+ ....+.+...+...|...+..|-..|+.-+..+....-... ..-.+.+...+.+.|+
T Consensus 616 ~dV~~aIsal~~sl~e-~F---e~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df-~~y~d~~ms~LvQ~ls 690 (858)
T COG5215 616 GDVYTAISALSTSLEE-RF---EQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDF-NIYADVLMSSLVQCLS 690 (858)
T ss_pred hHHHHHHHHHHHHHHH-HH---HHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHhc
Confidence 2233444444433321 11 12445666667777767777777777666555544321100 0001455556666664
Q ss_pred CC------Chhhhh---hHHHHhhccchHhhhhhHHHHHHHHhhhccccCC-CCCCCHHHHHHHHHHHHHHHhhhccccc
Q 001381 770 DP------NPAIRR---GSALALGVLPYELLANSWRDVLLKLCSCCLIEEN-PEDRDTEARVNAVRGLVSVCETLTQSQE 839 (1089)
Q Consensus 770 s~------~~~~r~---G~a~aLG~lp~~~~~~~~~~i~~~L~~~~~~~~~-~~~~d~e~R~~al~sL~~i~~~~g~~~~ 839 (1089)
+. .|+.-. -.|+++|+-. .++++.|+-.+..+....+. .+..-.+-|.++++....-.. |+...
T Consensus 691 s~~~~R~lKPaiLSvFgDIAlaiga~F----~~YL~~im~L~qqas~~~p~~~~~~~~dy~~~~~~~v~~ayV--gI~~~ 764 (858)
T COG5215 691 SEATHRDLKPAILSVFGDIALAIGANF----ESYLDMIMMLFQQASELDPHSDEVYVDDYRKNAVQLVNCAYV--GIGDS 764 (858)
T ss_pred ChhhccccchHHHHHHHHHHHHHhhhH----HHHHHHHHHHHHHHhccCCCCCceeHHHHHHHHHHHHHHHHH--Hhhhh
Confidence 32 222221 1234443322 33445555433333211111 122234788888887654333 33211
Q ss_pred cccccCCcchhhhhhhhHHHHHHHHHHhcccCCCCCCCCcchHHHHHHHHHHHHHHHHhhccCCCCCCCCCccccccCCC
Q 001381 840 NSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEICTYILCKRDFVPSPEKPQEVKSELPG 919 (1089)
Q Consensus 840 ~~~~~~~~~~~~~~~~~~~~i~~~Ll~~L~DYT~D~RGDVGSwVR~aa~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~ 919 (1089)
.+ ..+....+++..|+ ..++--+-|..| --+..| +++..|..+...+-+
T Consensus 765 ~~------nr~~~v~Pyv~sif----~~i~~iaeDp~~-se~~tr-aalGLigDla~mfpk------------------- 813 (858)
T COG5215 765 SK------NRVRSVLPYVISIF----HKIGMIAEDPNG-SEAHTR-AALGLIGDLAGMFPK------------------- 813 (858)
T ss_pred hh------hhHHHhhhHHHHHH----HHHHHhhcCCcc-chhHHH-HHHHHHHHHHHhCCC-------------------
Confidence 11 00111122333333 333334556677 344453 677777777533320
Q ss_pred CccccccccCHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHH
Q 001381 920 NVTAEKTLFDANLATNLVAGIVKQAVE--KMDKLREAAAKVL 959 (1089)
Q Consensus 920 ~~~~~~~~~~~~~~~~l~~~llrq~~E--kiD~vR~~A~~~L 959 (1089)
..-...++++.+...+.+.-++..- -=|.-|..+-++.
T Consensus 814 --gelk~~~~~dWv~d~l~~~~~ki~sqqtkD~aRwa~eqvk 853 (858)
T COG5215 814 --GELKFGLDEDWVKDFLYGMMKKISSQQTKDSARWAAEQVK 853 (858)
T ss_pred --cchhhccchHHHHHHHHHHHHHhhhhhchhhHHHHHHHHH
Confidence 0123557788888777666653222 2355565555443
No 108
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=74.60 E-value=1.9e+02 Score=35.18 Aligned_cols=138 Identities=14% Similarity=0.117 Sum_probs=80.2
Q ss_pred chHHHHHHHHHHHHHhhhcCCCC-chhhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCcchhhhhHHHHHH
Q 001381 688 GGEIMRSAVSRFIECISLSFVSL-PEKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYME 766 (1089)
Q Consensus 688 ~gelir~a~~~lI~~ls~~~lp~-~~~~~~~~~~~L~~~L~~~~~~V~~aAa~Al~~l~~~y~~~~~~~~~~~~v~~~~~ 766 (1089)
..+.++.-+.+.|+.++.+.... -+...-...++|+.. +++.++|-..|.++.......+... ..+..+.+-.+.
T Consensus 342 ~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa-~ds~~~v~~~Aeed~~~~las~~P~---~~I~~i~~~Ilt 417 (516)
T KOG2956|consen 342 EDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAA-KDSQDEVMRVAEEDCLTTLASHLPL---QCIVNISPLILT 417 (516)
T ss_pred hhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHH-hCCchhHHHHHHHHHHHHHHhhCch---hHHHHHhhHHhc
Confidence 35688888999998877644211 122344566777776 7777777777777766665555332 111111111111
Q ss_pred HhCC-CChhhhhhHHHHhhccchHhhhhhHHHHHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHhhhcc
Q 001381 767 QLTD-PNPAIRRGSALALGVLPYELLANSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQ 836 (1089)
Q Consensus 767 ~L~s-~~~~~r~G~a~aLG~lp~~~~~~~~~~i~~~L~~~~~~~~~~~~~d~e~R~~al~sL~~i~~~~g~ 836 (1089)
-.. .+.++-.-.-...+.++..-+...+..+..+++.+. +......|+.|+.+|..++.++|.
T Consensus 418 -~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay------~S~SS~VRKtaVfCLVamv~~vG~ 481 (516)
T KOG2956|consen 418 -ADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAY------DSTSSTVRKTAVFCLVAMVNRVGM 481 (516)
T ss_pred -CcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHh------cCchHHhhhhHHHhHHHHHHHHhH
Confidence 000 011111111123344455545566677777888775 345678999999999999999984
No 109
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=72.73 E-value=71 Score=38.51 Aligned_cols=184 Identities=17% Similarity=0.181 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHhcChhhhhhhhHHHHHhhhh-hhccCcCCCchhHHHHHHHHHHHhhhcccCCCCccccccccccccccc
Q 001381 263 GVVEALAAIFKAGGRKVLLDVIPVVWNDAST-MLKSGSAARSPLLRKYLMKLTQRLGLTCLPRCTSAWRYVIRTSSLGEN 341 (1089)
Q Consensus 263 G~L~~l~~ilk~~~~~~l~~~~~~i~~~~~~-l~~~~~~~~~~l~rKl~~Kl~~rlal~~L~pr~~~wrY~rg~rsL~~n 341 (1089)
|.|+-|-+++-.|.-..-.+|...|+..... +.++. +...+|+..++++.+-..
T Consensus 306 ~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~----~~~~k~laLrvL~~ml~~--------------------- 360 (516)
T KOG2956|consen 306 EALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSE----DEIIKKLALRVLREMLTN--------------------- 360 (516)
T ss_pred HHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccch----hhHHHHHHHHHHHHHHHh---------------------
Confidence 6666666776666655556666666553322 44444 677888888888774411
Q ss_pred cccccccccccccCccccccccccccCCCCCCCCCCchHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhh-hCcchh
Q 001381 342 MSSRAAFREIDQCDHSVVDSLKSEQNRNCPEDEGMDVPDILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSC-LTSSLS 420 (1089)
Q Consensus 342 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~e~vE~iI~~ll~~L~d~dt~vR~saAK~l~rI~~~-L~~~~a 420 (1089)
+ . .-..+-.|-.|..+|+.=.|.+..|=-.|+....++... +|....
T Consensus 361 -Q---~----------------------------~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I 408 (516)
T KOG2956|consen 361 -Q---P----------------------------ARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCI 408 (516)
T ss_pred -c---h----------------------------HhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHH
Confidence 0 0 001244888999999998888776666666666666655 443333
Q ss_pred hhHHHHHHhhcCCCCCCcchHHHHH-HHHHHHhcCC--CCCCcccchHHHHHHhhhhhccccccCCChhhhhhhhHHHHH
Q 001381 421 EEVFSSVLELFSPGEGDGSWHGGCL-ALAELARRGL--LLPSSLPKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWA 497 (1089)
Q Consensus 421 ~~vi~~il~~l~~~~~~~~wHg~~L-aLael~~~~l--l~p~~l~~il~~i~~~L~f~~r~~~~svG~~VRDAacfi~Ws 497 (1089)
.-+..-|+. +++.. --+|+ .+-++..+-- .+-..++++.|.+++|- .|..+-||-+|-|.+=+
T Consensus 409 ~~i~~~Ilt-----~D~~~-~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay--------~S~SS~VRKtaVfCLVa 474 (516)
T KOG2956|consen 409 VNISPLILT-----ADEPR-AVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAY--------DSTSSTVRKTAVFCLVA 474 (516)
T ss_pred HHHhhHHhc-----CcchH-HHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHh--------cCchHHhhhhHHHhHHH
Confidence 334333332 22221 11222 2334443321 12345688999998763 33447899999999999
Q ss_pred hhhccCccchhHHHHHHHHH
Q 001381 498 FGRAYCHTDMRNILEQIAPH 517 (1089)
Q Consensus 498 laR~~~~~~l~~~~~~l~~~ 517 (1089)
+......+.++||++.|-..
T Consensus 475 mv~~vG~~~mePhL~~Lt~s 494 (516)
T KOG2956|consen 475 MVNRVGMEEMEPHLEQLTSS 494 (516)
T ss_pred HHHHHhHHhhhhHhhhccHH
Confidence 99999988999999887443
No 110
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.65 E-value=2.1e+02 Score=37.12 Aligned_cols=230 Identities=17% Similarity=0.096 Sum_probs=130.0
Q ss_pred HHHHHhccccCCCChhhHHHHHHHHHHHHHHHhcccccCChhHHHHHHhhhHHHHhhhhccCcchHHHHHHHHHHHHHhh
Q 001381 625 FILEKLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPADKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECIS 704 (1089)
Q Consensus 625 ~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~l~~~~~~~~~~~~~~i~~i~~~~~~~~l~r~~~gelir~a~~~lI~~ls 704 (1089)
..+...+..+.++.+-+|-|++..++.++..=.. ..-...+++..++....+.. ..++.-.+.+.+.++|
T Consensus 727 e~~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~----~~~~~~ekvl~i~ld~Lkde------dsyvyLnaI~gv~~Lc 796 (982)
T KOG4653|consen 727 EPLQEAISSLHDDQVPIKGYGLQMLRHLIEKRKK----ATLIQGEKVLAIALDTLKDE------DSYVYLNAIRGVVSLC 796 (982)
T ss_pred HHHHHHHHHhcCCcccchHHHHHHHHHHHHhcch----hhhhhHHHHHHHHHHHhccc------CceeeHHHHHHHHHHH
Confidence 4566666677788888999888888888763211 01112244555555544321 1233334444444555
Q ss_pred hcCCCCchhhHHHHHHH-HHHhcCCC-------cHHHHHHHHHHHHHHHHHhhhccCcchhhhhHHHHHHHhCCCChhhh
Q 001381 705 LSFVSLPEKTKRSLLDT-LNENLRHP-------NSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLTDPNPAIR 776 (1089)
Q Consensus 705 ~~~lp~~~~~~~~~~~~-L~~~L~~~-------~~~V~~aAa~Al~~l~~~y~~~~~~~~~~~~v~~~~~~L~s~~~~~r 776 (1089)
.- .| +++++...+. .... .+. .-++....+.|...++..|+ +.++..|+.+++++...-|
T Consensus 797 ev-y~--e~il~dL~e~Y~s~k-~k~~~d~~lkVGEai~k~~qa~Gel~~~y~--------~~Li~tfl~gvrepd~~~R 864 (982)
T KOG4653|consen 797 EV-YP--EDILPDLSEEYLSEK-KKLQTDYRLKVGEAILKVAQALGELVFKYK--------AVLINTFLSGVREPDHEFR 864 (982)
T ss_pred Hh-cc--hhhHHHHHHHHHhcc-cCCCccceehHHHHHHHHHHHhccHHHHHH--------HHHHHHHHHhcCCchHHHH
Confidence 31 12 2233332221 1111 112 12334445556666666663 5788999999987766667
Q ss_pred hhHHHHhhccchHh---hhhhHHHHHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHhhhccccccccccCCcchhhhh
Q 001381 777 RGSALALGVLPYEL---LANSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLF 853 (1089)
Q Consensus 777 ~G~a~aLG~lp~~~---~~~~~~~i~~~L~~~~~~~~~~~~~d~e~R~~al~sL~~i~~~~g~~~~~~~~~~~~~~~~~~ 853 (1089)
.+....+|.+--.. ..+.+-+++..++...+ ++...-.||+|+.=+.......|.. +
T Consensus 865 aSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~-----~d~s~~vRRaAv~li~~lL~~tg~d--------------l- 924 (982)
T KOG4653|consen 865 ASSLANLGQLCQLLAFQVSDFFHEVLQLILSLET-----TDGSVLVRRAAVHLLAELLNGTGED--------------L- 924 (982)
T ss_pred HhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHc-----cCCchhhHHHHHHHHHHHHhccchh--------------h-
Confidence 77777777764332 23344455555544433 4556889999999999887765531 1
Q ss_pred hhhHHHHHHHHHHhcccCCCCCCCCcchHHHHHHHHHHHHHHHHhh
Q 001381 854 HLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEICTYILC 899 (1089)
Q Consensus 854 ~~~~~~i~~~Ll~~L~DYT~D~RGDVGSwVR~aa~~~l~~l~~ll~ 899 (1089)
-++.....--+...+.-|--+.+-|+ +|.-|..+++.+-..+.
T Consensus 925 Lpilr~~l~Dl~~tl~~~vr~~~dd~---~klhaql~leei~a~l~ 967 (982)
T KOG4653|consen 925 LPILRLLLIDLDETLLSYVRQHDDDG---LKLHAQLCLEEIQAALE 967 (982)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchhH---HHHHHHHHHHHHHHHHH
Confidence 12222233344556667777777777 77777777777654444
No 111
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=72.26 E-value=1.6e+02 Score=33.11 Aligned_cols=118 Identities=13% Similarity=0.084 Sum_probs=72.1
Q ss_pred CCCchhhHHHHHHHHHHhcccCCCC---------CCcccee-cccccchhhhHHHHHHHHHHHH------hhhcchHHHH
Q 001381 525 DREVNCRRAAAAAFQENVGRQGNYP---------HGIDIVN-TADYFSLSSRVYSYLHVAVFIA------QYEGYLYPFV 588 (1089)
Q Consensus 525 D~e~~iRRaAsAAlQE~vGR~g~~p---------~GI~il~-~~d~~~v~~r~~a~~~va~~va------~~~~Y~~~li 588 (1089)
.++..|++.|..|+.. ...|| .||.++. ..++-....+.+|.-.+...-. ....|...++
T Consensus 24 t~dp~i~e~al~al~n----~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc 99 (254)
T PF04826_consen 24 TEDPFIQEKALIALGN----SAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIPQVC 99 (254)
T ss_pred CCChHHHHHHHHHHHh----hccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHH
Confidence 3567788888777643 33333 2444443 2344444555555433322111 2234555555
Q ss_pred HHHHhCccCCCCHHHHHHHHHHHHHHHccC-chhhHHHHHHHhccccCCCChhhHHHHHHHH
Q 001381 589 DELLYNKICHWDKVLRELAAEALSALVKYD-PEYFANFILEKLTPFTLSTDLCTRHGATLAA 649 (1089)
Q Consensus 589 ~~Ll~~~l~h~D~~iR~laa~aL~~L~~~~-~~~~~~~vlp~Ll~~l~~~d~~~RHG~lLal 649 (1089)
+.++. .+||..++..+-++|..++-.+ -.++....+|.+++.+.+++..+|.-++-.+
T Consensus 100 ~~~~s---~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L 158 (254)
T PF04826_consen 100 EETVS---SPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVL 158 (254)
T ss_pred HHHhc---CCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHH
Confidence 55543 3789999999999999997543 3456667899999888888888887555443
No 112
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=71.69 E-value=1e+02 Score=36.47 Aligned_cols=162 Identities=17% Similarity=0.188 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHhhhCcc---hhhhHHHHHHhhcCCCCCCcchHH----HHHHHHHHHhc---CCCC--CCcccchHH-
Q 001381 400 VRWSAAKGIGRITSCLTSS---LSEEVFSSVLELFSPGEGDGSWHG----GCLALAELARR---GLLL--PSSLPKVVP- 466 (1089)
Q Consensus 400 vR~saAK~l~rI~~~L~~~---~a~~vi~~il~~l~~~~~~~~wHg----~~LaLael~~~---~ll~--p~~l~~il~- 466 (1089)
+++.+.+-+.+-+++-..+ +..+.+..+.+.+........++. ++-.|+.+++. .-++ ++.|+.|+.
T Consensus 112 vK~~i~~~~~ly~~kY~e~f~~~l~~fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~~~~~~~lf~~~~~L~~Iie~ 191 (370)
T PF08506_consen 112 VKAWICENLNLYAEKYEEEFEPFLPTFVQAVWNLLTKISQQPKYDILVSKALQFLSSVAESPHHKNLFENKPHLQQIIEK 191 (370)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHTSHHHHTTT-SHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcchhHHHHhCCHHHHHHHHHH
Confidence 4444455555555554443 345677777777765544445544 22233333332 2133 235555442
Q ss_pred HHHHhhhhh---------------ccccccCCChhhhhhhhHHHHHhhhccCccchhHHHHHHHHHHHHHHhcCCCchhh
Q 001381 467 VIVKALHYD---------------IRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCR 531 (1089)
Q Consensus 467 ~i~~~L~f~---------------~r~~~~svG~~VRDAacfi~WslaR~~~~~~l~~~~~~l~~~Ll~~alfD~e~~iR 531 (1089)
+|..-+.|. .|...++=-...|-|||-.+-++++.|... ..+.+...+..++..---|+..|-|
T Consensus 192 VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~-v~~i~~~~i~~~l~~y~~~~~~~w~ 270 (370)
T PF08506_consen 192 VIFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQ-VTSILMQYIQQLLQQYASNPSNNWR 270 (370)
T ss_dssp THHHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-TTT-HH
T ss_pred hccCccCCCHHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHhhCCcccHH
Confidence 333222221 222222323567889999999999998753 3344444444544432335555554
Q ss_pred --HHHHHHHHHHhcccCCCCCCc----cceecccccc
Q 001381 532 --RAAAAAFQENVGRQGNYPHGI----DIVNTADYFS 562 (1089)
Q Consensus 532 --RaAsAAlQE~vGR~g~~p~GI----~il~~~d~~~ 562 (1089)
.+|.-.+.-+.-|..+.-+|. +++...+||.
T Consensus 271 ~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~ 307 (370)
T PF08506_consen 271 SKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFS 307 (370)
T ss_dssp HHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHH
T ss_pred HHHHHHHHHHHHHhhhccccCCcccccccccHHHHHH
Confidence 455555555555554445565 4556667773
No 113
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.32 E-value=77 Score=37.08 Aligned_cols=233 Identities=21% Similarity=0.188 Sum_probs=123.9
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHHHhh--hCc---chhhhHHHHHHhhcCCCCCCcchHHHHHHHHHH---------
Q 001381 385 IIEILLSGLRDTDTVVRWSAAKGIGRITSC--LTS---SLSEEVFSSVLELFSPGEGDGSWHGGCLALAEL--------- 450 (1089)
Q Consensus 385 iI~~ll~~L~d~dt~vR~saAK~l~rI~~~--L~~---~~a~~vi~~il~~l~~~~~~~~wHg~~LaLael--------- 450 (1089)
-+..|.+.+...|+.|||-+.++++.|.-- --+ +.-..+|++++++..+..+... .-+-+||.-+
T Consensus 209 ~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvk-cqA~lALrnlasdt~Yq~e 287 (550)
T KOG4224|consen 209 GLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVK-CQAGLALRNLASDTEYQRE 287 (550)
T ss_pred CchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHH-HHHHHHHhhhcccchhhhH
Confidence 456788889999999999999999988632 111 1223489999988865422111 1112222222
Q ss_pred -HhcCCCCCCc---cc-chHHHHHHhhhhhccccc-c----------------------CCChhhhhhhhHHHHHhhhcc
Q 001381 451 -ARRGLLLPSS---LP-KVVPVIVKALHYDIRRGS-H----------------------SVGSHVRDAAAYVCWAFGRAY 502 (1089)
Q Consensus 451 -~~~~ll~p~~---l~-~il~~i~~~L~f~~r~~~-~----------------------svG~~VRDAacfi~WslaR~~ 502 (1089)
.+.|.+ |.. |+ ...|.|.... |=.|..+ | .-...+.=+|.-.+|-+|-+|
T Consensus 288 iv~ag~l-P~lv~Llqs~~~plilasV-aCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAass 365 (550)
T KOG4224|consen 288 IVEAGSL-PLLVELLQSPMGPLILASV-ACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASS 365 (550)
T ss_pred HHhcCCc-hHHHHHHhCcchhHHHHHH-HHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhh
Confidence 111211 110 00 0112111111 1111100 0 000223444666677777666
Q ss_pred CccchhHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHhcccCCCCCCccceecccccchhhhHHHHHHHHHHHHhhhc
Q 001381 503 CHTDMRNILEQIAPHLLTVACYDREVNCRRAAAAAFQENVGRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEG 582 (1089)
Q Consensus 503 ~~~~l~~~~~~l~~~Ll~~alfD~e~~iRRaAsAAlQE~vGR~g~~p~GI~il~~~d~~~v~~r~~a~~~va~~va~~~~ 582 (1089)
... -..+.+.=+...+..-+.|.-+.+|---+|++--+ +. ...+.+
T Consensus 366 e~n-~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~L--------------------------------al-~d~~k~ 411 (550)
T KOG4224|consen 366 EHN-VSVIRESGAIPKLIELLLDGPVSVQSEISACIAQL--------------------------------AL-NDNDKE 411 (550)
T ss_pred hhh-hHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHH--------------------------------Hh-ccccHH
Confidence 542 23345555666666666776666666555554221 00 001111
Q ss_pred chH--HHHHHHHhCccCCCCHHHHHHHHHHHHHHHccCchhhH---------HHHHHHhccccCCCChhhHHHHHHHHHH
Q 001381 583 YLY--PFVDELLYNKICHWDKVLRELAAEALSALVKYDPEYFA---------NFILEKLTPFTLSTDLCTRHGATLAAGE 651 (1089)
Q Consensus 583 Y~~--~li~~Ll~~~l~h~D~~iR~laa~aL~~L~~~~~~~~~---------~~vlp~Ll~~l~~~d~~~RHG~lLalae 651 (1089)
|.- .|++-|+. ..++...++|--||.||++++....+|.. .-+-..|...+.+.+...||=+...+-.
T Consensus 412 ~lld~gi~~iLIp-~t~s~s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~q 490 (550)
T KOG4224|consen 412 ALLDSGIIPILIP-WTGSESEEVRGNAAAALINLSSDVEHYARVIEAWDHPVQGIQGRLARFLASHELTFRHIARWTIQQ 490 (550)
T ss_pred HHhhcCCcceeec-ccCccchhhcccHHHHHHhhhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 111 24444443 56788999999999999999986554432 2233445556678888999977776666
Q ss_pred HHHH
Q 001381 652 VVLA 655 (1089)
Q Consensus 652 vl~~ 655 (1089)
+++.
T Consensus 491 Lle~ 494 (550)
T KOG4224|consen 491 LLED 494 (550)
T ss_pred HHHh
Confidence 6653
No 114
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=70.54 E-value=94 Score=32.34 Aligned_cols=115 Identities=17% Similarity=0.093 Sum_probs=73.4
Q ss_pred hhhHHHHHHHhCCCChhhhhhHHHHhhccc----hHhhhhhHHHHHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHhh
Q 001381 758 GGISLKYMEQLTDPNPAIRRGSALALGVLP----YELLANSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCET 833 (1089)
Q Consensus 758 ~~~v~~~~~~L~s~~~~~r~G~a~aLG~lp----~~~~~~~~~~i~~~L~~~~~~~~~~~~~d~e~R~~al~sL~~i~~~ 833 (1089)
+.++.+..+.|++.++..|...+..+++.- +..+..+...-+..|...+.. .....++..|+.+|..++..
T Consensus 24 ~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~-----~~~~~~~~~ai~~L~~l~~~ 98 (165)
T PF08167_consen 24 HKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEK-----PDPPSVLEAAIITLTRLFDL 98 (165)
T ss_pred HHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHH
Confidence 556666666777777766665555555552 233333334455555555432 33478899999999999987
Q ss_pred hccccccccccCCcchhhhhhhhHHHHHHHHHHhcccCCCCCCCCcchHHHHHHHHHHHHHH
Q 001381 834 LTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEICT 895 (1089)
Q Consensus 834 ~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~L~DYT~D~RGDVGSwVR~aa~~~l~~l~ 895 (1089)
++..+. ..=++.-+....++..+++.++| .-+.+.++.++..++
T Consensus 99 ~~~~p~--------l~Rei~tp~l~~~i~~ll~l~~~----------~~~~~~~l~~L~~ll 142 (165)
T PF08167_consen 99 IRGKPT--------LTREIATPNLPKFIQSLLQLLQD----------SSCPETALDALATLL 142 (165)
T ss_pred hcCCCc--------hHHHHhhccHHHHHHHHHHHHhc----------cccHHHHHHHHHHHH
Confidence 654321 11123345678889999998887 446789999998876
No 115
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=69.41 E-value=1.1e+02 Score=37.09 Aligned_cols=109 Identities=14% Similarity=0.137 Sum_probs=62.7
Q ss_pred HHHHhhcCCCChhHHHHHHHHHHHHHhhhCcc----hhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHHhcCCC---CCC
Q 001381 387 EILLSGLRDTDTVVRWSAAKGIGRITSCLTSS----LSEEVFSSVLELFSPGEGDGSWHGGCLALAELARRGLL---LPS 459 (1089)
Q Consensus 387 ~~ll~~L~d~dt~vR~saAK~l~rI~~~L~~~----~a~~vi~~il~~l~~~~~~~~wHg~~LaLael~~~~ll---~p~ 459 (1089)
..++..|...|..+-..+++-++.++..=+.. ..+.+++.+.+.++...+.....-+.-.|++|.+..-. +-.
T Consensus 104 ~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~ 183 (429)
T cd00256 104 EPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVL 183 (429)
T ss_pred HHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHH
Confidence 34445566778899999999999987642222 22334556666665443344455555667777765421 000
Q ss_pred cccchHHHHHHhhhhhccccccCCChhhhhhhhHHHHHhhhccC
Q 001381 460 SLPKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYC 503 (1089)
Q Consensus 460 ~l~~il~~i~~~L~f~~r~~~~svG~~VRDAacfi~WslaR~~~ 503 (1089)
...++.+..-| + +.+.|-|.---+||++|-+.-.-.
T Consensus 184 --~~~v~~L~~~L-----~-~~~~~~Ql~Y~~ll~lWlLSF~~~ 219 (429)
T cd00256 184 --ADGVPTLVKLL-----S-NATLGFQLQYQSIFCIWLLTFNPH 219 (429)
T ss_pred --ccCHHHHHHHH-----h-hccccHHHHHHHHHHHHHHhccHH
Confidence 11333333323 1 122477888889999999965433
No 116
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=69.29 E-value=1.2e+02 Score=34.17 Aligned_cols=102 Identities=22% Similarity=0.215 Sum_probs=63.6
Q ss_pred CCCCHHHHHHHHHHHHHHHhhhccccccccccCCcchhhhhhhhHHHHHHHHHHhcccCCCCCCCCcchHHHHHHHHHHH
Q 001381 813 EDRDTEARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLE 892 (1089)
Q Consensus 813 ~~~d~e~R~~al~sL~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~L~DYT~D~RGDVGSwVR~aa~~~l~ 892 (1089)
+..|...|..|+..|+.++..+... .+....+..+++-+..-|+|... +..+ ++|+.
T Consensus 9 tsed~~~R~ka~~~Ls~vL~~lp~~-------------~L~~~ev~~L~~F~~~rl~D~~~---------~~~~-l~gl~ 65 (262)
T PF14500_consen 9 TSEDPIIRAKALELLSEVLERLPPD-------------FLSRQEVQVLLDFFCSRLDDHAC---------VQPA-LKGLL 65 (262)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCHh-------------hccHHHHHHHHHHHHHHhccHhh---------HHHH-HHHHH
Confidence 4568899999999999999876532 23345566666777777777532 4444 77776
Q ss_pred HHHHHhhccCCCCCCCCCccccccCCCCccccccccCHHHHHHHHHHHHH--HhhhhhHHHHHHHHHHHHHHhhc
Q 001381 893 ICTYILCKRDFVPSPEKPQEVKSELPGNVTAEKTLFDANLATNLVAGIVK--QAVEKMDKLREAAAKVLRRILYN 965 (1089)
Q Consensus 893 ~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~llr--q~~EkiD~vR~~A~~~L~~l~~~ 965 (1089)
.+. . . +.+.++...+++..+.+ ..--..-++|....++|..++.+
T Consensus 66 ~L~---~-~------------------------~~~~~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~ 112 (262)
T PF14500_consen 66 ALV---K-M------------------------KNFSPESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLEN 112 (262)
T ss_pred HHH---h-C------------------------cCCChhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHH
Confidence 653 1 1 12344445555555554 12234456788888887777654
No 117
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=68.81 E-value=3.1e+02 Score=34.32 Aligned_cols=154 Identities=16% Similarity=0.210 Sum_probs=84.5
Q ss_pred HHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhCcchhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHHhcCCCCCCc
Q 001381 381 ILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSLSEEVFSSVLELFSPGEGDGSWHGGCLALAELARRGLLLPSS 460 (1089)
Q Consensus 381 ~vE~iI~~ll~~L~d~dt~vR~saAK~l~rI~~~L~~~~a~~vi~~il~~l~~~~~~~~wHg~~LaLael~~~~ll~p~~ 460 (1089)
.-...+..|...+-|....||--|-|.|.+..+--..+ -..+++.+...+..+.++.....++|-+ ..-++.
T Consensus 129 l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ne-en~~~n~l~~~vqnDPS~EVRr~allni-------~vdnsT 200 (885)
T COG5218 129 LANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNE-ENRIVNLLKDIVQNDPSDEVRRLALLNI-------SVDNST 200 (885)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHhcCcHHHHHHHHHHHe-------eeCCCc
Confidence 34556677777788999999999999999988543222 1234554555554433333232233321 122333
Q ss_pred ccchHHHHHHhhhhhccccccCCChhhhhhhhHHHHH-hhhccCc------cchhHHHHHHHHHHHHHHhcCCCchhhHH
Q 001381 461 LPKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWA-FGRAYCH------TDMRNILEQIAPHLLTVACYDREVNCRRA 533 (1089)
Q Consensus 461 l~~il~~i~~~L~f~~r~~~~svG~~VRDAacfi~Ws-laR~~~~------~~l~~~~~~l~~~Ll~~alfD~e~~iRRa 533 (1089)
+|-|+.- -||+.--.-.. -+|.... ...++.+ + |+.-++-|||..+|.|
T Consensus 201 ~p~IlER-------------------arDv~~anRr~vY~r~Lp~iGd~~~lsi~kri---~--l~ewgl~dRe~sv~~a 256 (885)
T COG5218 201 YPCILER-------------------ARDVSGANRRMVYERCLPRIGDLKSLSIDKRI---L--LMEWGLLDREFSVKGA 256 (885)
T ss_pred chhHHHH-------------------hhhhhHHHHHHHHHHHhhhhcchhhcccccee---h--hhhhcchhhhhhHHHH
Confidence 3433322 12221100000 1111111 1122222 2 7889999999999999
Q ss_pred HHHHHHHHhcccCCCCCCccceecccccchhhhHHHH
Q 001381 534 AAAAFQENVGRQGNYPHGIDIVNTADYFSLSSRVYSY 570 (1089)
Q Consensus 534 AsAAlQE~vGR~g~~p~GI~il~~~d~~~v~~r~~a~ 570 (1089)
+.-++- -.=..|...+++....++-|++++-+-
T Consensus 257 ~~d~ia----~~w~~~~d~~lveLle~lDvSr~sv~v 289 (885)
T COG5218 257 LVDAIA----SAWRIPEDLRLVELLEFLDVSRRSVLV 289 (885)
T ss_pred HHHHHH----HHhcccccccHHHHHHHHhhhhHHHHH
Confidence 887753 222345566677878888888877443
No 118
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.33 E-value=3e+02 Score=33.67 Aligned_cols=70 Identities=13% Similarity=0.136 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhCcc---hhhhHHHHHHhhcCCCCCCcchHHHHHHHHH
Q 001381 380 DILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSS---LSEEVFSSVLELFSPGEGDGSWHGGCLALAE 449 (1089)
Q Consensus 380 e~vE~iI~~ll~~L~d~dt~vR~saAK~l~rI~~~L~~~---~a~~vi~~il~~l~~~~~~~~wHg~~LaLae 449 (1089)
..+-+++..+.....|+++.+|-.|+.+||+...--|.+ +...++++|+..|-++.+....|.++.+|.-
T Consensus 254 ~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~ 326 (533)
T KOG2032|consen 254 GLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTM 326 (533)
T ss_pred ccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 557788888899999999999999999999999997754 5788999999888666556666776666543
No 119
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=66.57 E-value=1.8e+02 Score=34.04 Aligned_cols=88 Identities=22% Similarity=0.237 Sum_probs=59.4
Q ss_pred hhhHHHHHHHHHHHHhhh--------cchHHHHHHHHhCccCCCCHHHHHHHHHHHHHHHccCch---h-hHHHHHHHhc
Q 001381 564 SSRVYSYLHVAVFIAQYE--------GYLYPFVDELLYNKICHWDKVLRELAAEALSALVKYDPE---Y-FANFILEKLT 631 (1089)
Q Consensus 564 ~~r~~a~~~va~~va~~~--------~Y~~~li~~Ll~~~l~h~D~~iR~laa~aL~~L~~~~~~---~-~~~~vlp~Ll 631 (1089)
..+-.|+-++...+.+++ ..+.+++. .+.|-|.++|++||.-+|..++.+|. . +-...++.|+
T Consensus 98 e~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~-----~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll 172 (342)
T KOG2160|consen 98 EDKEDALDNLEELVEDIDNANDLISLGGLVPLLG-----YLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL 172 (342)
T ss_pred HHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHH-----HhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence 445555555555554332 23444443 56699999999999999999999884 1 2233566666
Q ss_pred cccCC-CChhhHHHHHHHHHHHHHHH
Q 001381 632 PFTLS-TDLCTRHGATLAAGEVVLAL 656 (1089)
Q Consensus 632 ~~l~~-~d~~~RHG~lLalaevl~~l 656 (1089)
..+.+ .+..+|--++.|++.++...
T Consensus 173 ~~ls~~~~~~~r~kaL~AissLIRn~ 198 (342)
T KOG2160|consen 173 KILSSDDPNTVRTKALFAISSLIRNN 198 (342)
T ss_pred HHHccCCCchHHHHHHHHHHHHHhcC
Confidence 66654 45677788999999988654
No 120
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=65.24 E-value=3.4e+02 Score=36.57 Aligned_cols=173 Identities=19% Similarity=0.203 Sum_probs=109.1
Q ss_pred HHHHHHHhcCCCCC-C-cccchHHHHHHhhhhhccccccCCChhhhhhhhHHHHHhhhccCccchhHHHHHHHHHHHHHH
Q 001381 445 LALAELARRGLLLP-S-SLPKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVA 522 (1089)
Q Consensus 445 LaLael~~~~ll~p-~-~l~~il~~i~~~L~f~~r~~~~svG~~VRDAacfi~WslaR~~~~~~l~~~~~~l~~~Ll~~a 522 (1089)
=++.+++-+-++-+ . .|.+..|+|.++. .+.+-.+- --++-||. + |++|-.+-+ ..+.+.=++ ++.+.
T Consensus 899 d~i~~icE~eLl~gek~lLg~f~piv~e~c---~n~~~~sd-p~Lq~AAt-L--aL~klM~iS--a~fces~l~-llfti 968 (1251)
T KOG0414|consen 899 DLISGICEKELLYGEKSLLGRFAPIVVEGC---RNPGLFSD-PELQAAAT-L--ALGKLMCIS--AEFCESHLP-LLFTI 968 (1251)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHh---cCCCcCCC-HHHHHHHH-H--HHHHHhhhh--HHHHHHHHH-HHHHH
Confidence 34555566666555 3 4688889988776 12222221 22444443 3 355543311 112222222 33444
Q ss_pred hc-CCCchhhHHHHHHHHHHhcccCCCCCCccceeccccc-------chhhhHHHHHHHHHHHH----hhhcchHHHHHH
Q 001381 523 CY-DREVNCRRAAAAAFQENVGRQGNYPHGIDIVNTADYF-------SLSSRVYSYLHVAVFIA----QYEGYLYPFVDE 590 (1089)
Q Consensus 523 lf-D~e~~iRRaAsAAlQE~vGR~g~~p~GI~il~~~d~~-------~v~~r~~a~~~va~~va----~~~~Y~~~li~~ 590 (1089)
+- -|.+.||-=+..|+..+--|+.++ |+- .++++ +...|++|.+.++..+- +-..|...|.
T Consensus 969 meksp~p~IRsN~VvalgDlav~fpnl---ie~--~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiKVKGql~eMA-- 1041 (1251)
T KOG0414|consen 969 MEKSPSPRIRSNLVVALGDLAVRFPNL---IEP--WTEHLYRRLRDESPSVRKTALLVLSHLILNDMIKVKGQLSEMA-- 1041 (1251)
T ss_pred HhcCCCceeeecchheccchhhhcccc---cch--hhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhHhcccHHHHH--
Confidence 44 789999999999988888787654 222 23333 56889999999888764 2346666665
Q ss_pred HHhCccCCCCHHHHHHHHHHHHHHHccCchhhHHHHHHHhccccCCCCh
Q 001381 591 LLYNKICHWDKVLRELAAEALSALVKYDPEYFANFILEKLTPFTLSTDL 639 (1089)
Q Consensus 591 Ll~~~l~h~D~~iR~laa~aL~~L~~~~~~~~~~~vlp~Ll~~l~~~d~ 639 (1089)
..|.+.|.+||.+|=.-+.+|.++. ..+-++||.++.++.++++
T Consensus 1042 ---~cl~D~~~~IsdlAk~FF~Els~k~--n~iynlLPdil~~Ls~~~l 1085 (1251)
T KOG0414|consen 1042 ---LCLEDPNAEISDLAKSFFKELSSKG--NTIYNLLPDILSRLSNGNL 1085 (1251)
T ss_pred ---HHhcCCcHHHHHHHHHHHHHhhhcc--cchhhhchHHHHhhccCcc
Confidence 3677999999999999999998765 4455688888888877644
No 121
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=63.78 E-value=12 Score=42.94 Aligned_cols=228 Identities=16% Similarity=0.180 Sum_probs=138.0
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHHHhhhCc--c--hhhhHHHHHHhhcCCCCCC-cchHHHHHHHHHHHhcCCCCCC
Q 001381 385 IIEILLSGLRDTDTVVRWSAAKGIGRITSCLTS--S--LSEEVFSSVLELFSPGEGD-GSWHGGCLALAELARRGLLLPS 459 (1089)
Q Consensus 385 iI~~ll~~L~d~dt~vR~saAK~l~rI~~~L~~--~--~a~~vi~~il~~l~~~~~~-~~wHg~~LaLael~~~~ll~p~ 459 (1089)
.+..+.+-|.+..-.||-.+-=+||.|+.--+. + +..-+++-+|..|.+...+ .-...+.-+|.-|||-+-.+|+
T Consensus 158 AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~ 237 (526)
T COG5064 158 AVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPD 237 (526)
T ss_pred chHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCc
Confidence 345677788888999999999999999875321 1 1223667778877644322 2234566689999999887776
Q ss_pred --cccchHHHHHHhhhhhccccccCCChhhhhhhhHHHHHhhhccCcc--chhHHHHHHHHHHHHHHhcCCCchhhHHHH
Q 001381 460 --SLPKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHT--DMRNILEQIAPHLLTVACYDREVNCRRAAA 535 (1089)
Q Consensus 460 --~l~~il~~i~~~L~f~~r~~~~svG~~VRDAacfi~WslaR~~~~~--~l~~~~~~l~~~Ll~~alfD~e~~iRRaAs 535 (1089)
.+...+|++.|-++-... +--.-.|||+.---+.. -....+..=...=++..+..++.+|-.-|.
T Consensus 238 w~~isqalpiL~KLiys~D~-----------evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPal 306 (526)
T COG5064 238 WSNISQALPILAKLIYSRDP-----------EVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPAL 306 (526)
T ss_pred hHHHHHHHHHHHHHHhhcCH-----------HHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHH
Confidence 578899998776633221 11233589986554421 111222222222244566666666644433
Q ss_pred HHHHHHhcccCCCCCCccceecccccchhhhHHHHHHHHHHHHhhhcchHHHHHHHHhCccCCCCHHHHHHHHHHHHHHH
Q 001381 536 AAFQENVGRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNKICHWDKVLRELAAEALSALV 615 (1089)
Q Consensus 536 AAlQE~vGR~g~~p~GI~il~~~d~~~v~~r~~a~~~va~~va~~~~Y~~~li~~Ll~~~l~h~D~~iR~laa~aL~~L~ 615 (1089)
.+ | |++ ++-.|..+-... .+ + .++.+. ..|.|.-..+|+-|.-++.+++
T Consensus 307 R~----v---GNI------VTG~D~QTqviI------~~----G-------~L~a~~-~lLs~~ke~irKEaCWTiSNIT 355 (526)
T COG5064 307 RS----V---GNI------VTGSDDQTQVII------NC----G-------ALKAFR-SLLSSPKENIRKEACWTISNIT 355 (526)
T ss_pred Hh----h---cCe------eecCccceehhe------ec----c-------cHHHHH-HHhcChhhhhhhhhheeecccc
Confidence 33 2 443 222222210000 00 1 111111 1255777899999999999999
Q ss_pred ccCchhhH----HHHHHHhccccCCCChhhHHHHHHHHHHHHH
Q 001381 616 KYDPEYFA----NFILEKLTPFTLSTDLCTRHGATLAAGEVVL 654 (1089)
Q Consensus 616 ~~~~~~~~----~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~ 654 (1089)
....+.+. .+++|-|+..+++.+..+|.-+|.|++-...
T Consensus 356 AGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNats 398 (526)
T COG5064 356 AGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATS 398 (526)
T ss_pred cCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 87765432 4678888888888888999989988876554
No 122
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=63.01 E-value=61 Score=36.90 Aligned_cols=109 Identities=17% Similarity=0.257 Sum_probs=60.8
Q ss_pred hHHHHHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHhhhccccccccccCCcchhhhhhhhHHHHHHHHHHhcccCCC
Q 001381 794 SWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSV 873 (1089)
Q Consensus 794 ~~~~i~~~L~~~~~~~~~~~~~d~e~R~~al~sL~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~L~DYT~ 873 (1089)
.+++++..|. +..+.++|.+|+.||.. + .-+.++++-++..++|--|
T Consensus 198 YF~kvisal~---------dEs~~~~r~aAl~sLr~-----------d-------------sGlhQLvPYFi~f~~eqit 244 (450)
T COG5095 198 YFDKVISALL---------DESDEQTRDAALESLRN-----------D-------------SGLHQLVPYFIHFFNEQIT 244 (450)
T ss_pred HHHHHHHHHH---------HHHHHHHHHHHHHHhcc-----------C-------------ccHHHHHHHHHHHHHHHHH
Confidence 4556666663 34578999999999864 0 1234455555666655433
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHhhccCCCCCCCCCccccccCCCCccccccccCHHHHHHHHHHHHHHhhh------h
Q 001381 874 DNRGDVGSWVREAAVDGLEICTYILCKRDFVPSPEKPQEVKSELPGNVTAEKTLFDANLATNLVAGIVKQAVE------K 947 (1089)
Q Consensus 874 D~RGDVGSwVR~aa~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~llrq~~E------k 947 (1089)
-+=||. +- -+..+...+++|. ++.+|-..+++++|.+|+-...- +
T Consensus 245 ~Nl~nl---~~--LtTv~~m~~sLL~------------------------N~~iFvdPY~hqlmPSilTcliakklg~~p 295 (450)
T COG5095 245 KNLKNL---EK--LTTVVMMYSSLLK------------------------NKYIFVDPYLHQLMPSILTCLIAKKLGNVP 295 (450)
T ss_pred HhhhhH---HH--HHHHHHHHHHHhc------------------------CCceeecHHHHHHHHHHHHHHHHHHhcCCC
Confidence 333332 22 1222233334443 34556667888888777644333 2
Q ss_pred hH----HHHHHHHHHHHHHhh
Q 001381 948 MD----KLREAAAKVLRRILY 964 (1089)
Q Consensus 948 iD----~vR~~A~~~L~~l~~ 964 (1089)
-| .+|..|..++--.+.
T Consensus 296 ~dhe~~alRd~AA~ll~yV~~ 316 (450)
T COG5095 296 DDHEHYALRDVAADLLKYVFS 316 (450)
T ss_pred cchhHHHHHHHHHHHHHHHHh
Confidence 23 388888877665543
No 123
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=62.86 E-value=26 Score=40.20 Aligned_cols=156 Identities=15% Similarity=0.125 Sum_probs=88.6
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHHHhhhCcchhh---hHHHHHHhhcCCCCC---CcchHHHHHHHHHHHhcCC---
Q 001381 385 IIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSLSE---EVFSSVLELFSPGEG---DGSWHGGCLALAELARRGL--- 455 (1089)
Q Consensus 385 iI~~ll~~L~d~dt~vR~saAK~l~rI~~~L~~~~a~---~vi~~il~~l~~~~~---~~~wHg~~LaLael~~~~l--- 455 (1089)
....|+..+..+|..+...+++-++++...-+..... ++++.+++.+..... .+..+.++-+|++|++..-
T Consensus 106 ~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~ 185 (312)
T PF03224_consen 106 PYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQ 185 (312)
T ss_dssp -HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHH
Confidence 6677888888899999999999999999998776655 788888887765322 1234778889999987632
Q ss_pred CCCCcccchHHHHHHhhhhhccccccCCChhhhhhhhHHHHHhhhccCccchhHHH-HHHHHHHHHHHhcCCCchhhHHH
Q 001381 456 LLPSSLPKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNIL-EQIAPHLLTVACYDREVNCRRAA 534 (1089)
Q Consensus 456 l~p~~l~~il~~i~~~L~f~~r~~~~svG~~VRDAacfi~WslaR~~~~~~l~~~~-~~l~~~Ll~~alfD~e~~iRRaA 534 (1089)
.+-+ ...++.+..-+. .+...+++.|-|+---++|++|-+. |+++....+. ..++..|+-..--..-.=|=|-+
T Consensus 186 ~f~~--~~~v~~l~~iL~-~~~~~~~~~~~Ql~Y~~ll~lWlLS--F~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~ 260 (312)
T PF03224_consen 186 VFWK--SNGVSPLFDILR-KQATNSNSSGIQLQYQALLCLWLLS--FEPEIAEELNKKYLIPLLADILKDSIKEKVVRVS 260 (312)
T ss_dssp HHHT--HHHHHHHHHHHH----------HHHHHHHHHHHHHHHT--TSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHH
T ss_pred HHHh--cCcHHHHHHHHH-hhcccCCCCchhHHHHHHHHHHHHh--cCHHHHHHHhccchHHHHHHHHHhcccchHHHHH
Confidence 0101 334444444332 3333456788999999999999984 4432222211 11333333222222233455567
Q ss_pred HHHHHHHhccc
Q 001381 535 AAAFQENVGRQ 545 (1089)
Q Consensus 535 sAAlQE~vGR~ 545 (1089)
.|+|.-++..-
T Consensus 261 la~l~Nl~~~~ 271 (312)
T PF03224_consen 261 LAILRNLLSKA 271 (312)
T ss_dssp HHHHHHTTSSS
T ss_pred HHHHHHHHhcc
Confidence 88888877655
No 124
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=62.01 E-value=3.7e+02 Score=32.82 Aligned_cols=113 Identities=14% Similarity=0.200 Sum_probs=72.1
Q ss_pred hCcchhhhHHHHHHhhcCCCCCCcchHHHHHHHH-HHHhcCCCCCCcccchHHHHHHhhhhhccccccCCChhhhhhhhH
Q 001381 415 LTSSLSEEVFSSVLELFSPGEGDGSWHGGCLALA-ELARRGLLLPSSLPKVVPVIVKALHYDIRRGSHSVGSHVRDAAAY 493 (1089)
Q Consensus 415 L~~~~a~~vi~~il~~l~~~~~~~~wHg~~LaLa-el~~~~ll~p~~l~~il~~i~~~L~f~~r~~~~svG~~VRDAacf 493 (1089)
++.+....+|..++..+.....+.... .||.+- -+.+.|.+|++.++.++..+.....-. .-|=
T Consensus 169 l~e~~i~~lv~~i~~iC~~Ts~~~di~-~~L~vldaii~y~~iP~~sl~~~i~vLCsi~~~~--------------~l~~ 233 (464)
T PF11864_consen 169 LDEDEISSLVDQICTICKSTSSEDDIE-ACLSVLDAIITYGDIPSESLSPCIEVLCSIVNSV--------------SLCK 233 (464)
T ss_pred CCHHHHHHHHHHHHHHHhccCcHHHHH-HHHHHHHHHHHcCcCChHHHHHHHHHHhhHhccc--------------ccch
Confidence 566777888888888876554444443 455444 467788888899999998886542111 3344
Q ss_pred HHHHhhhccCccchhHHHHHHHHHHHHHHh------cCCCchhhHHHHHHHHHHhcccC
Q 001381 494 VCWAFGRAYCHTDMRNILEQIAPHLLTVAC------YDREVNCRRAAAAAFQENVGRQG 546 (1089)
Q Consensus 494 i~WslaR~~~~~~l~~~~~~l~~~Ll~~al------fD~e~~iRRaAsAAlQE~vGR~g 546 (1089)
-+|-..|+.-.+... .-+...++.-+ ..++.++=|+|...|+.++-..|
T Consensus 234 ~~w~~m~nL~~S~~g----~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~ 288 (464)
T PF11864_consen 234 PSWRTMRNLLKSHLG----HSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSG 288 (464)
T ss_pred hHHHHHHHHHcCccH----HHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccc
Confidence 578887775543322 22222233333 35677888999999999876663
No 125
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=61.98 E-value=3.7e+02 Score=32.85 Aligned_cols=65 Identities=14% Similarity=0.203 Sum_probs=42.4
Q ss_pred hhhhhhhhHHHHHhhhccCccchhHHHHHHHH-------------------HHHHHHhcCCCchhhHHHHHHHHHHhccc
Q 001381 485 SHVRDAAAYVCWAFGRAYCHTDMRNILEQIAP-------------------HLLTVACYDREVNCRRAAAAAFQENVGRQ 545 (1089)
Q Consensus 485 ~~VRDAacfi~WslaR~~~~~~l~~~~~~l~~-------------------~Ll~~alfD~e~~iRRaAsAAlQE~vGR~ 545 (1089)
+.||.+---.+-++.|.|++..+.+.+.-++. +=+.--+-..++|+|-+|.-.+.-+||.+
T Consensus 102 ~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v~t~ 181 (728)
T KOG4535|consen 102 CSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIVSTH 181 (728)
T ss_pred HHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHhcC
Confidence 44666555556677788887665544433321 11233345678999999999999999998
Q ss_pred CCCC
Q 001381 546 GNYP 549 (1089)
Q Consensus 546 g~~p 549 (1089)
...|
T Consensus 182 ~~~p 185 (728)
T KOG4535|consen 182 APLP 185 (728)
T ss_pred CCCH
Confidence 6544
No 126
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=61.96 E-value=2e+02 Score=37.55 Aligned_cols=202 Identities=15% Similarity=0.164 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHhcccCCCCCCccceecccccchhhhHHHHHHHHHHHHhhhcchHHHHH
Q 001381 510 ILEQIAPHLLTVACYDREVNCRRAAAAAFQENVGRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFVD 589 (1089)
Q Consensus 510 ~~~~l~~~Ll~~alfD~e~~iRRaAsAAlQE~vGR~g~~p~GI~il~~~d~~~v~~r~~a~~~va~~va~~~~Y~~~li~ 589 (1089)
++..+..++ .+.++|+.+==|..|.+.+++.+---+.. +. .+ |. .++-
T Consensus 250 i~~ki~~~l-~t~~~s~~WK~R~Eale~l~~~l~e~~~~-----~~--~~-----------------------~~-~ll~ 297 (815)
T KOG1820|consen 250 ILSKITKNL-ETEMLSKKWKDRKEALEELVAILEEAKKE-----IV--KG-----------------------YT-GLLG 297 (815)
T ss_pred hhhhcChHH-HHhhhccchHHHHHHHHHHHHHHhccccc-----cc--cC-----------------------cc-hHHH
Confidence 444555554 58899999999999999988876444310 00 01 11 1233
Q ss_pred HHHhCccCCCCHHHHHHHHHHHHHHHccCch---hhHHHHHHHhccccCCCChhhHHHHHHHHHHHHHHHhcccccCChh
Q 001381 590 ELLYNKICHWDKVLRELAAEALSALVKYDPE---YFANFILEKLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPAD 666 (1089)
Q Consensus 590 ~Ll~~~l~h~D~~iR~laa~aL~~L~~~~~~---~~~~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~l~~~~~~~~~~ 666 (1089)
-++.....+-+..+..+||..|..|+...+. .....++|.+++++...-...|+-++=++-.+...
T Consensus 298 ~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns----------- 366 (815)
T KOG1820|consen 298 ILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNS----------- 366 (815)
T ss_pred HHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhc-----------
Confidence 3333345588889999999999999986654 33456777777777766666666322222222110
Q ss_pred HHHHHHhhhHHHHhhhhccCcchHHHHHHHHHHHHHhhhcCCCCchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 001381 667 KQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLPEKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQ 746 (1089)
Q Consensus 667 ~~~~i~~i~~~~~~~~l~r~~~gelir~a~~~lI~~ls~~~lp~~~~~~~~~~~~L~~~L~~~~~~V~~aAa~Al~~l~~ 746 (1089)
. .+....+.+.+.+++.++.++..-...+...+.
T Consensus 367 -----------------------------------------~-----~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~ 400 (815)
T KOG1820|consen 367 -----------------------------------------T-----PLSKMSEAILEALKGKNPQIKGECLLLLDRKLR 400 (815)
T ss_pred -----------------------------------------c-----cHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHh
Confidence 0 012334445555677777766655555555555
Q ss_pred Hhhh-ccCcchhhhhHHHHHHHhCCCChhhhhhHHHHhhccchHhhhhhHHHHHH
Q 001381 747 TYMV-AADSGVVGGISLKYMEQLTDPNPAIRRGSALALGVLPYELLANSWRDVLL 800 (1089)
Q Consensus 747 ~y~~-~~~~~~~~~~v~~~~~~L~s~~~~~r~G~a~aLG~lp~~~~~~~~~~i~~ 800 (1089)
.+-. .......+.+++..+....+.+..+|..+.-++|++...+-.+.+.+.+.
T Consensus 401 ~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~ 455 (815)
T KOG1820|consen 401 KLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKLLK 455 (815)
T ss_pred hcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 5431 11233447778888888888888899988888888876654444444443
No 127
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.65 E-value=4.7e+02 Score=33.63 Aligned_cols=96 Identities=23% Similarity=0.276 Sum_probs=61.9
Q ss_pred chHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhCcch--hhhHHHHHHhhcCCCCCCcchHHHHHHHHHHHhcC-
Q 001381 378 VPDILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSL--SEEVFSSVLELFSPGEGDGSWHGGCLALAELARRG- 454 (1089)
Q Consensus 378 v~e~vE~iI~~ll~~L~d~dt~vR~saAK~l~rI~~~L~~~~--a~~vi~~il~~l~~~~~~~~wHg~~LaLael~~~~- 454 (1089)
|+..+|.+.+-+..+++|.+..||.++|=+.++.-.. ++++ ..-+++.+-+++. ++++...--++=+|.|+....
T Consensus 115 v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~-~~~~~~~~gl~~~L~~ll~-D~~p~VVAnAlaaL~eI~e~~~ 192 (734)
T KOG1061|consen 115 VDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDI-DPDLVEDSGLVDALKDLLS-DSNPMVVANALAALSEIHESHP 192 (734)
T ss_pred ehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcC-ChhhccccchhHHHHHHhc-CCCchHHHHHHHHHHHHHHhCC
Confidence 4688999999999999999999999999998887654 4443 2346666666665 333344444555666664433
Q ss_pred -CCCCCcccchHHHHHHhhhhh
Q 001381 455 -LLLPSSLPKVVPVIVKALHYD 475 (1089)
Q Consensus 455 -ll~p~~l~~il~~i~~~L~f~ 475 (1089)
..++...++++...+.++.+-
T Consensus 193 ~~~~~~l~~~~~~~lL~al~ec 214 (734)
T KOG1061|consen 193 SVNLLELNPQLINKLLEALNEC 214 (734)
T ss_pred CCCcccccHHHHHHHHHHHHHh
Confidence 222333344555555555443
No 128
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=59.45 E-value=2.9e+02 Score=34.64 Aligned_cols=142 Identities=18% Similarity=0.142 Sum_probs=82.1
Q ss_pred hhhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhcc---------CcchhhhhHHHHHHHhC----CCChhhhhh
Q 001381 712 EKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAA---------DSGVVGGISLKYMEQLT----DPNPAIRRG 778 (1089)
Q Consensus 712 ~~~~~~~~~~L~~~L~~~~~~V~~aAa~Al~~l~~~y~~~~---------~~~~~~~~v~~~~~~L~----s~~~~~r~G 778 (1089)
.+.+..+..++...-...+..++.+|.-++..+...++... .....+++++.+.+.++ ..+...+.-
T Consensus 430 ~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 509 (618)
T PF01347_consen 430 EELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIV 509 (618)
T ss_dssp HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHH
Confidence 34555555555433345667888999999999988876542 12233566666666553 456677888
Q ss_pred HHHHhhccchHhhhhhHHHHHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHhhhccccccccccCCcchhhhhhhhHH
Q 001381 779 SALALGVLPYELLANSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKN 858 (1089)
Q Consensus 779 ~a~aLG~lp~~~~~~~~~~i~~~L~~~~~~~~~~~~~d~e~R~~al~sL~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 858 (1089)
+..|||.+... .++..|...+... .......|..|+.||..+.. ...+
T Consensus 510 ~LkaLgN~g~~-------~~i~~l~~~i~~~---~~~~~~~R~~Ai~Alr~~~~----------------------~~~~ 557 (618)
T PF01347_consen 510 YLKALGNLGHP-------ESIPVLLPYIEGK---EEVPHFIRVAAIQALRRLAK----------------------HCPE 557 (618)
T ss_dssp HHHHHHHHT-G-------GGHHHHHTTSTTS---S-S-HHHHHHHHHTTTTGGG----------------------T-HH
T ss_pred HHHHhhccCCc-------hhhHHHHhHhhhc---cccchHHHHHHHHHHHHHhh----------------------cCcH
Confidence 89999988532 1234443333211 24578999999999986421 1234
Q ss_pred HHHHHHHHhcccCCCCCCCCcchHHHHHHHHHH
Q 001381 859 EVMTSLFKALDDYSVDNRGDVGSWVREAAVDGL 891 (1089)
Q Consensus 859 ~i~~~Ll~~L~DYT~D~RGDVGSwVR~aa~~~l 891 (1089)
.+.+.|+.-+.|=+-| .-||.||...|
T Consensus 558 ~v~~~l~~I~~n~~e~------~EvRiaA~~~l 584 (618)
T PF01347_consen 558 KVREILLPIFMNTTED------PEVRIAAYLIL 584 (618)
T ss_dssp HHHHHHHHHHH-TTS-------HHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCC------hhHHHHHHHHH
Confidence 5556666665553222 34999988666
No 129
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.10 E-value=2.1e+02 Score=36.38 Aligned_cols=142 Identities=22% Similarity=0.269 Sum_probs=85.7
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCcchhhhhHH----HHHHHhCCCChhhhhhHHHHhhcc-------
Q 001381 718 LLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISL----KYMEQLTDPNPAIRRGSALALGVL------- 786 (1089)
Q Consensus 718 ~~~~L~~~L~~~~~~V~~aAa~Al~~l~~~y~~~~~~~~~~~~v~----~~~~~L~s~~~~~r~G~a~aLG~l------- 786 (1089)
+..+|-.+|.-++.+||..|+.-+-.++.........+..+.+++ .+.+.|++.-+..|.-+...+.-+
T Consensus 175 ~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~ 254 (1005)
T KOG1949|consen 175 YKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEM 254 (1005)
T ss_pred HhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH
Confidence 445667788999999998777655444332211111233344444 445566888888887666555433
Q ss_pred -chHhhhhhHHHHHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHhhhccccccccccCCcchhhhhhhhHHHHHHHHH
Q 001381 787 -PYELLANSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLF 865 (1089)
Q Consensus 787 -p~~~~~~~~~~i~~~L~~~~~~~~~~~~~d~e~R~~al~sL~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll 865 (1089)
|+.....-+.+|++.+.. +.-.+.|....++|..+... | .+...++.++..|-
T Consensus 255 iP~~i~~~ll~kI~d~~a~---------dt~s~VR~svf~gl~~~l~n------p-----------~sh~~le~~Lpal~ 308 (1005)
T KOG1949|consen 255 IPPTILIDLLKKITDELAF---------DTSSDVRCSVFKGLPMILDN------P-----------LSHPLLEQLLPALR 308 (1005)
T ss_pred cCHHHHHHHHHHHHHHhhh---------ccchheehhHhcCcHHHHcC------c-----------cchhHHHHHHHhcc
Confidence 222223333444444422 23458899999999887532 1 12356677788777
Q ss_pred HhcccCCCCCCCCcchHHHHHHHHHHHH
Q 001381 866 KALDDYSVDNRGDVGSWVREAAVDGLEI 893 (1089)
Q Consensus 866 ~~L~DYT~D~RGDVGSwVR~aa~~~l~~ 893 (1089)
-+|.|-++- ||.|+.+-|-.
T Consensus 309 ~~l~D~se~--------VRvA~vd~ll~ 328 (1005)
T KOG1949|consen 309 YSLHDNSEK--------VRVAFVDMLLK 328 (1005)
T ss_pred hhhhccchh--------HHHHHHHHHHH
Confidence 777776554 99999988744
No 130
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=58.39 E-value=2.1e+02 Score=35.62 Aligned_cols=139 Identities=19% Similarity=0.205 Sum_probs=85.2
Q ss_pred hhhhhccccccCCChhhhhhhhHHHHHhhhccCccchhHHHHHHHHHHHHHHhcCCCchhhHHHHHHH---HHHhcccCC
Q 001381 471 ALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAAAAAF---QENVGRQGN 547 (1089)
Q Consensus 471 ~L~f~~r~~~~svG~~VRDAacfi~WslaR~~~~~~l~~~~~~l~~~Ll~~alfD~e~~iRRaAsAAl---QE~vGR~g~ 547 (1089)
+.++...||.-|.-..||--.|-++--+.-...+ +...+-+....-+..-+||||..+|+-|.-+| ||+-|---+
T Consensus 91 ~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~e--IDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen 168 (885)
T COG5218 91 GTFYHLLRGTESKDKKVRKRSLQILALLSDVVRE--IDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEEN 168 (885)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcch--HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHH
Confidence 3445667888899999999999986655555443 23334444444556789999999999988875 554433222
Q ss_pred C------------CC---------Cc--------cceecccccchhhhHHHHHHHHHHHHhhh--cchHHHHHHHHhCcc
Q 001381 548 Y------------PH---------GI--------DIVNTADYFSLSSRVYSYLHVAVFIAQYE--GYLYPFVDELLYNKI 596 (1089)
Q Consensus 548 ~------------p~---------GI--------~il~~~d~~~v~~r~~a~~~va~~va~~~--~Y~~~li~~Ll~~~l 596 (1089)
+ |. .| -|+..+---+.+||+=-|..+-+.++++. ..-+.+. |+..++
T Consensus 169 ~~~n~l~~~vqnDPS~EVRr~allni~vdnsT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~lsi~kri~--l~ewgl 246 (885)
T COG5218 169 RIVNLLKDIVQNDPSDEVRRLALLNISVDNSTYPCILERARDVSGANRRMVYERCLPRIGDLKSLSIDKRIL--LMEWGL 246 (885)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHeeeCCCcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhhccccceeh--hhhhcc
Confidence 1 00 00 11111111234677777777777777553 1222232 555677
Q ss_pred CCCCHHHHHHHHHHHHH
Q 001381 597 CHWDKVLRELAAEALSA 613 (1089)
Q Consensus 597 ~h~D~~iR~laa~aL~~ 613 (1089)
.+-|..+|..++.++.-
T Consensus 247 ~dRe~sv~~a~~d~ia~ 263 (885)
T COG5218 247 LDREFSVKGALVDAIAS 263 (885)
T ss_pred hhhhhhHHHHHHHHHHH
Confidence 78888888888887753
No 131
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=58.19 E-value=6.7e+02 Score=34.62 Aligned_cols=58 Identities=19% Similarity=0.362 Sum_probs=45.6
Q ss_pred CCHHHHHHHHHHHHHHHhhhccccccccccCCcchhhhhhhhHHHHHHHHHHhcccCCCCCCCCcchHHHHHHHHHHHHH
Q 001381 815 RDTEARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEIC 894 (1089)
Q Consensus 815 ~d~e~R~~al~sL~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~L~DYT~D~RGDVGSwVR~aa~~~l~~l 894 (1089)
.+-+.|..|+.-++.++..-+.. ..+..+.++.+++.-++|=+.+ ||.++++...++
T Consensus 271 e~~~~Rl~a~~lvg~~~~~~~~~---------------l~~~~~~~~~~fl~r~~D~~~~--------vR~~~v~~~~~~ 327 (1266)
T KOG1525|consen 271 EQEEVRLKAVKLVGRMFSDKDSQ---------------LSETYDDLWSAFLGRFNDISVE--------VRMECVESIKQC 327 (1266)
T ss_pred chHHHHHHHHHHHHHHHhcchhh---------------hcccchHHHHHHHHHhccCChh--------hhhhHHHHhHHH
Confidence 46799999999999887643321 1145577899999999998887 999999999887
Q ss_pred H
Q 001381 895 T 895 (1089)
Q Consensus 895 ~ 895 (1089)
+
T Consensus 328 l 328 (1266)
T KOG1525|consen 328 L 328 (1266)
T ss_pred H
Confidence 4
No 132
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=57.15 E-value=3.4e+02 Score=30.82 Aligned_cols=161 Identities=19% Similarity=0.172 Sum_probs=85.5
Q ss_pred cCCCCHHHHHHHHHHHHHHHccCchhhHHHHHHHhccccCCCChhhHHHHHHHHHHHHHHHhcc----------cccCCh
Q 001381 596 ICHWDKVLRELAAEALSALVKYDPEYFANFILEKLTPFTLSTDLCTRHGATLAAGEVVLALCKY----------DYALPA 665 (1089)
Q Consensus 596 l~h~D~~iR~laa~aL~~L~~~~~~~~~~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~l~~~----------~~~~~~ 665 (1089)
..+-++-+|--||+|||.+. +++ +++.+-+..+.+-..+|..+.+|+..+-..=.-. ..|..+
T Consensus 78 desq~pmvRhEAaealga~~--~~~-----~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p 150 (289)
T KOG0567|consen 78 DESQEPMVRHEAAEALGAIG--DPE-----SLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPP 150 (289)
T ss_pred ccccchHHHHHHHHHHHhhc--chh-----hHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCccccCCCCCc
Confidence 34788899999999999997 332 2333322224444567777778877765431100 011122
Q ss_pred hHHHHHHhhhHHHHhhhhccCcchHHHHHHHHHHHHHhhhcCCCCchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 001381 666 DKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLPEKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFV 745 (1089)
Q Consensus 666 ~~~~~i~~i~~~~~~~~l~r~~~gelir~a~~~lI~~ls~~~lp~~~~~~~~~~~~L~~~L~~~~~~V~~aAa~Al~~l~ 745 (1089)
.....+.++-..+.+.. .+.+-|..+.-.+.++.. +.-+..|-+++..++.-.|..++-.|.++.
T Consensus 151 ~~~ssv~~lr~~lld~t-----~~l~~Ry~amF~LRn~g~----------EeaI~al~~~l~~~SalfrhEvAfVfGQl~ 215 (289)
T KOG0567|consen 151 ANLSSVHELRAELLDET-----KPLFERYRAMFYLRNIGT----------EEAINALIDGLADDSALFRHEVAFVFGQLQ 215 (289)
T ss_pred cccccHHHHHHHHHhcc-----hhHHHHHhhhhHhhccCc----------HHHHHHHHHhcccchHHHHHHHHHHHhhcc
Confidence 11111222222222110 011222222222221111 112223455667777778888877776663
Q ss_pred HHhhhccCcchhhhhHHHHHHHhC--CCChhhhhhHHHHhhccchH
Q 001381 746 QTYMVAADSGVVGGISLKYMEQLT--DPNPAIRRGSALALGVLPYE 789 (1089)
Q Consensus 746 ~~y~~~~~~~~~~~~v~~~~~~L~--s~~~~~r~G~a~aLG~lp~~ 789 (1089)
. ..-++.+.+.|. ..++..|.=.|-|||++-..
T Consensus 216 s-----------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e 250 (289)
T KOG0567|consen 216 S-----------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIADE 250 (289)
T ss_pred c-----------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH
Confidence 3 344666666663 67899999999999999644
No 133
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=57.04 E-value=47 Score=38.87 Aligned_cols=136 Identities=19% Similarity=0.237 Sum_probs=77.6
Q ss_pred HHHHHHHHhcCCCchhhHHHHHHHHHHhcccCCCCCCccceecccccch--h-hh---HHHHHHHHHHHH----hhhcch
Q 001381 515 APHLLTVACYDREVNCRRAAAAAFQENVGRQGNYPHGIDIVNTADYFSL--S-SR---VYSYLHVAVFIA----QYEGYL 584 (1089)
Q Consensus 515 ~~~Ll~~alfD~e~~iRRaAsAAlQE~vGR~g~~p~GI~il~~~d~~~v--~-~r---~~a~~~va~~va----~~~~Y~ 584 (1089)
+-.-|+.+|.+.+..-|++|...|+.--|=+-..|+=+..|. +-.++ . +. ...+..+.-.+. ..+.|.
T Consensus 179 yf~~It~a~~~~~~~~r~~aL~sL~tD~gl~~LlPyf~~fI~--~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Yl 256 (343)
T cd08050 179 YFEEITEALVGSNEEKRREALQSLRTDPGLQQLLPYFVRFIA--EGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYL 256 (343)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhccCCCchhhhhHHHHHHH--HHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhH
Confidence 334456788888999999988888877777766663222211 11111 1 11 111111111111 123455
Q ss_pred HHHHHHH----HhCccCC-----CCHHHHHHHHHHHHHHHccCch---hhHHHHHHHhccccCC--CChhhHHHHHHHHH
Q 001381 585 YPFVDEL----LYNKICH-----WDKVLRELAAEALSALVKYDPE---YFANFILEKLTPFTLS--TDLCTRHGATLAAG 650 (1089)
Q Consensus 585 ~~li~~L----l~~~l~h-----~D~~iR~laa~aL~~L~~~~~~---~~~~~vlp~Ll~~l~~--~d~~~RHG~lLala 650 (1089)
-.|+.-+ +.+.++. ..-.+|+.||+.|+.++...+. .+...++..+.+.+.+ ......-|++.+++
T Consensus 257 h~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~ 336 (343)
T cd08050 257 HQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVGLS 336 (343)
T ss_pred HHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHHHH
Confidence 5554444 4444443 3458999999999999986543 2445555555555543 34456889999988
Q ss_pred HH
Q 001381 651 EV 652 (1089)
Q Consensus 651 ev 652 (1089)
++
T Consensus 337 ~l 338 (343)
T cd08050 337 AL 338 (343)
T ss_pred Hh
Confidence 76
No 134
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.17 E-value=5.7e+02 Score=32.87 Aligned_cols=62 Identities=15% Similarity=-0.006 Sum_probs=54.2
Q ss_pred ccCCCCHHHHHHHHHHHHHHHccCchhhHHHHHHHhccccCCCChhhHHHHHHHHHHHHHHHh
Q 001381 595 KICHWDKVLRELAAEALSALVKYDPEYFANFILEKLTPFTLSTDLCTRHGATLAAGEVVLALC 657 (1089)
Q Consensus 595 ~l~h~D~~iR~laa~aL~~L~~~~~~~~~~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~l~ 657 (1089)
.+.|--+.+|+-|.-.+-++.-++|+.+.. .+|+|.+++.++|..+--.++--++|+...-+
T Consensus 152 LL~sskpYvRKkAIl~lykvFLkYPeAlr~-~FprL~EkLeDpDp~V~SAAV~VICELArKnP 213 (877)
T KOG1059|consen 152 LLNSSKPYVRKKAILLLYKVFLKYPEALRP-CFPRLVEKLEDPDPSVVSAAVSVICELARKNP 213 (877)
T ss_pred HHhcCchHHHHHHHHHHHHHHHhhhHhHhh-hHHHHHHhccCCCchHHHHHHHHHHHHHhhCC
Confidence 567999999999999999999999986654 68999999999999999988888999886544
No 135
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=54.60 E-value=3.5e+02 Score=34.33 Aligned_cols=197 Identities=19% Similarity=0.142 Sum_probs=109.2
Q ss_pred CHHHHHHHHHHHHHHHc-cCchhhHHHHHHHhccccC--CCChhhHHHHHHHHHHHHHHHhcccccCChhHHHHHHhhhH
Q 001381 600 DKVLRELAAEALSALVK-YDPEYFANFILEKLTPFTL--STDLCTRHGATLAAGEVVLALCKYDYALPADKQKIVAGIVP 676 (1089)
Q Consensus 600 D~~iR~laa~aL~~L~~-~~~~~~~~~vlp~Ll~~l~--~~d~~~RHG~lLalaevl~~l~~~~~~~~~~~~~~i~~i~~ 676 (1089)
-.++.-+|+-+||-+.- ...+.+...++..+.++.. ..|...|. ..|++|-+..+ + .+.++.+...+.
T Consensus 502 ~~ev~~~aslsLG~IfvGscn~dvts~ilqtlmekse~El~d~~~RF-L~LGL~llflg--k------qe~~d~~~e~~~ 572 (878)
T KOG2005|consen 502 PMEVVAFASLSLGMIFVGSCNEDVTSSILQTLMEKSETELEDQWFRF-LALGLALLFLG--K------QESVDAVVETIK 572 (878)
T ss_pred chhHHHHHHhhcceeEEecCChHHHHHHHHHHHHhhhhhhhchHHHH-HHHHHHHHHhc--c------cchHHHHHHHHH
Confidence 35688889988887754 3345677888999988765 45677787 55666655432 1 122222222222
Q ss_pred HHHhhhhccCcchHHHHHHHHHHHHHhhhcCCCCchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-HHHHhhhccCcc
Q 001381 677 GIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLPEKTKRSLLDTLNENLRHPNSQIQNAAVKALKP-FVQTYMVAADSG 755 (1089)
Q Consensus 677 ~~~~~~l~r~~~gelir~a~~~lI~~ls~~~lp~~~~~~~~~~~~L~~~L~~~~~~V~~aAa~Al~~-l~~~y~~~~~~~ 755 (1089)
.+ ++-++..+..++..|+-+..----.+.+ +..+..|=.|....-.++-...+.. ++. +. +..
T Consensus 573 ~i----------~~~~~~~~~~lv~~caYaGTGnvl~Iq~--q~ll~~cgE~~~~~e~~~~~avLgiAliA--Mg--eei 636 (878)
T KOG2005|consen 573 AI----------EGPIRKHESILVKSCAYAGTGNVLKIQS--QLLLSFCGEHDADLESEQELAVLGIALIA--MG--EEI 636 (878)
T ss_pred Hh----------hhHHHHHHHHHHHHhhccccCceEEech--hhhhhhcCCCccchhhhccchhhhhhhhh--hh--hhh
Confidence 22 2356677777888777543100000111 3334444233322211110111110 111 11 111
Q ss_pred hhhhhHHHHHHHhCCCChhhhhhHHHHhhccchHhhhhhHHHHHHHHhhhccccCCCCCCCHHHHHHHHHHHHHH
Q 001381 756 VVGGISLKYMEQLTDPNPAIRRGSALALGVLPYELLANSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSV 830 (1089)
Q Consensus 756 ~~~~~v~~~~~~L~s~~~~~r~G~a~aLG~lp~~~~~~~~~~i~~~L~~~~~~~~~~~~~d~e~R~~al~sL~~i 830 (1089)
..+=.++.|-+.++.+++..||...+|+|-+... +|++ .|++.|-+-+ .+.|.|+--||+-|++-+
T Consensus 637 g~eM~lR~f~h~l~yge~~iRravPLal~llsvS--NPq~-~vlDtLsk~s------hd~D~eva~naIfamGLi 702 (878)
T KOG2005|consen 637 GSEMVLRHFGHLLHYGEPHIRRAVPLALGLLSVS--NPQV-NVLDTLSKFS------HDGDLEVAMNAIFAMGLI 702 (878)
T ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhccC--CCcc-hHHHHHHHhc------cCcchHHHHHHHHHhccc
Confidence 2244556666777889999999999999988643 3333 4777775554 466889999999988754
No 136
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=53.90 E-value=30 Score=32.61 Aligned_cols=54 Identities=22% Similarity=0.191 Sum_probs=41.3
Q ss_pred CCHHHHHHHHHHHHHHHccCch---hhHHHHHHHhccccC--CCChhhHHHHHHHHHHH
Q 001381 599 WDKVLRELAAEALSALVKYDPE---YFANFILEKLTPFTL--STDLCTRHGATLAAGEV 652 (1089)
Q Consensus 599 ~D~~iR~laa~aL~~L~~~~~~---~~~~~vlp~Ll~~l~--~~d~~~RHG~lLalaev 652 (1089)
.+-.+|+.||+-|+.+++...+ .+...++..+.+.+. +....++-|++.+++++
T Consensus 18 ~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l 76 (92)
T PF07571_consen 18 NHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL 76 (92)
T ss_pred chHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 3558999999999999987553 345566666666665 34678888999999987
No 137
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=53.51 E-value=5.5e+02 Score=32.17 Aligned_cols=75 Identities=19% Similarity=0.118 Sum_probs=56.1
Q ss_pred hHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhh-CcchhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHHhcC
Q 001381 379 PDILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCL-TSSLSEEVFSSVLELFSPGEGDGSWHGGCLALAELARRG 454 (1089)
Q Consensus 379 ~e~vE~iI~~ll~~L~d~dt~vR~saAK~l~rI~~~L-~~~~a~~vi~~il~~l~~~~~~~~wHg~~LaLael~~~~ 454 (1089)
+........+|-.-|+|+.-.|-.-+||++-+.+.+- +.++.+++|..+-..|+... -.....++=+|-++++-.
T Consensus 259 ~q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~r-v~~rFsA~Riln~lam~~ 334 (898)
T COG5240 259 SQALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEENVGSQFVDQTVSSLRTFLKSTR-VVLRFSAMRILNQLAMKY 334 (898)
T ss_pred hHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHhhC
Confidence 4667778888888899999999999999999988874 77788888887766665432 122344666777777654
No 138
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=52.73 E-value=2.3e+02 Score=35.40 Aligned_cols=142 Identities=20% Similarity=0.092 Sum_probs=85.1
Q ss_pred hhhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCc---chhhhhHHHHHHHhC----CCChhhhhhHHHHhh
Q 001381 712 EKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADS---GVVGGISLKYMEQLT----DPNPAIRRGSALALG 784 (1089)
Q Consensus 712 ~~~~~~~~~~L~~~L~~~~~~V~~aAa~Al~~l~~~y~~~~~~---~~~~~~v~~~~~~L~----s~~~~~r~G~a~aLG 784 (1089)
.+.+..+.+++..--..+...++..|.-++..+...++...+. ....++++.+.+.|+ ..+...+.-+..|||
T Consensus 392 ~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLG 471 (574)
T smart00638 392 EEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALG 471 (574)
T ss_pred HHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhh
Confidence 4556666666654445567788999999999998876543321 112455555555542 345556778899999
Q ss_pred ccchHhhhhhHHHHHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHhhhccccccccccCCcchhhhhhhhHHHHHHHH
Q 001381 785 VLPYELLANSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSL 864 (1089)
Q Consensus 785 ~lp~~~~~~~~~~i~~~L~~~~~~~~~~~~~d~e~R~~al~sL~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~L 864 (1089)
-+..... +..|...+. .. .......|..|+.||..+... ....+-+.|
T Consensus 472 N~g~~~~-------i~~l~~~l~--~~-~~~~~~iR~~Av~Alr~~a~~----------------------~p~~v~~~l 519 (574)
T smart00638 472 NAGHPSS-------IKVLEPYLE--GA-EPLSTFIRLAAILALRNLAKR----------------------DPRKVQEVL 519 (574)
T ss_pred ccCChhH-------HHHHHHhcC--CC-CCCCHHHHHHHHHHHHHHHHh----------------------CchHHHHHH
Confidence 8853321 122221111 01 344678999999999875421 123455666
Q ss_pred HHhcccCCCCCCCCcchHHHHHHHHHH
Q 001381 865 FKALDDYSVDNRGDVGSWVREAAVDGL 891 (1089)
Q Consensus 865 l~~L~DYT~D~RGDVGSwVR~aa~~~l 891 (1089)
+.-+.|-+- .+-||.+|.-.+
T Consensus 520 ~~i~~n~~e------~~EvRiaA~~~l 540 (574)
T smart00638 520 LPIYLNRAE------PPEVRMAAVLVL 540 (574)
T ss_pred HHHHcCCCC------ChHHHHHHHHHH
Confidence 666655433 355999888766
No 139
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=50.87 E-value=9.9e+02 Score=36.39 Aligned_cols=151 Identities=19% Similarity=0.276 Sum_probs=89.3
Q ss_pred HHHHHHhCccCCCCHHHHHHHHHHHHHHHccC------ch-----hhHHHHHHHhccccCCCChhhHHHHHHHHHHHHHH
Q 001381 587 FVDELLYNKICHWDKVLRELAAEALSALVKYD------PE-----YFANFILEKLTPFTLSTDLCTRHGATLAAGEVVLA 655 (1089)
Q Consensus 587 li~~Ll~~~l~h~D~~iR~laa~aL~~L~~~~------~~-----~~~~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~ 655 (1089)
++|.|+. ++.|.+.+++..+-.++..+-... ++ .+...+++.+.+.+.+..|..|-|.+.++.-++..
T Consensus 985 ~ldal~~-~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~~ 1063 (3550)
T KOG0889|consen 985 FLDALVE-SLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIES 1063 (3550)
T ss_pred HHHHHHH-HHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehhh
Confidence 6777776 788999999999999998775421 21 34567788888899999999999999998888766
Q ss_pred HhcccccCChhHHHHHHhhhHHHHhhhhcc--CcchH----HHHHHHHHHHH---Hhhh-cCCCCch-hhHHHHHHHHHH
Q 001381 656 LCKYDYALPADKQKIVAGIVPGIEKARLYR--GKGGE----IMRSAVSRFIE---CISL-SFVSLPE-KTKRSLLDTLNE 724 (1089)
Q Consensus 656 l~~~~~~~~~~~~~~i~~i~~~~~~~~l~r--~~~ge----lir~a~~~lI~---~ls~-~~lp~~~-~~~~~~~~~L~~ 724 (1089)
++. .-+.++...+.+.-+|. |..+| -...+--.++. .+.. ...+... ......+..+-.
T Consensus 1064 ~~~----------~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~ 1133 (3550)
T KOG0889|consen 1064 MPS----------LWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVL 1133 (3550)
T ss_pred chH----------HHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 541 11222222222211111 11011 11111111111 1111 0001000 122334444555
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHHh
Q 001381 725 NLRHPNSQIQNAAVKALKPFVQTY 748 (1089)
Q Consensus 725 ~L~~~~~~V~~aAa~Al~~l~~~y 748 (1089)
-|.++++.|++.+...+..++..+
T Consensus 1134 eL~npN~~VR~~~~~~L~~i~~~s 1157 (3550)
T KOG0889|consen 1134 ELFNPNSDVREFSQKLLRLISELS 1157 (3550)
T ss_pred HHcCCchHHHHHHHHHHHHHHHHc
Confidence 579999999999999999988876
No 140
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=50.08 E-value=45 Score=41.78 Aligned_cols=145 Identities=23% Similarity=0.247 Sum_probs=90.4
Q ss_pred hHHHHHHHHHHhcccCCCCCCCCcchHHHHHHHHHHHHHHHHhhccCCCCCCCCCccccccCCCCccccccccCHHHHHH
Q 001381 856 IKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEICTYILCKRDFVPSPEKPQEVKSELPGNVTAEKTLFDANLATN 935 (1089)
Q Consensus 856 ~~~~i~~~Ll~~L~DYT~D~RGDVGSwVR~aa~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 935 (1089)
..+++.+.+++||+||++|.|||||||||..||+++.+++ .+ |+ ...++
T Consensus 684 sie~fr~~iln~l~nY~~d~rGDVgs~iR~~a~klm~SfL---~k-D~----------------------~~~~~----- 732 (993)
T COG5234 684 SIEEFRKEILNVLSNYLTDTRGDVGSWIRKPAMKLMSSFL---VK-DS----------------------SGKKL----- 732 (993)
T ss_pred cHHHHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHh---hc-cc----------------------cCCch-----
Confidence 4677889999999999999999999999999999998863 21 11 10111
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHhhccCccCC-ccchHHHhhhcCCCcccCcCCCCChhhH----HhhhcChhhhH
Q 001381 936 LVAGIVKQAVEKMDKLREAAAKVLRRILYNKTIFVP-IPHREKLEEIVPNEADLNWGVPAFSYPR----FVHLLRFSCYS 1010 (1089)
Q Consensus 936 l~~~llrq~~EkiD~vR~~A~~~L~~l~~~~~~~~~-~~~~~~L~~~f~~~~~~~w~~~~~~f~~----~~~lL~~~~y~ 1010 (1089)
.++||.+||+|.+|..|.+++..+.-+.+...- .-+..-+...| |+.++..=-+ -.+++.++.-.
T Consensus 733 ---y~iR~~~dki~~lR~l~yqa~eqI~v~~~s~~~~~~~~~g~~~~f-------r~g~~vd~g~l~~~~~~Ll~~~nsf 802 (993)
T COG5234 733 ---YIIRQTFDKIDSLRGLAYQALEQIRVHYLSRRCEALTNIGNRISF-------RNGPNVDGGVLNELNISLLEIPNSF 802 (993)
T ss_pred ---hHHHHhhcccHHHHhhhhhhhhheeeehhhhhhhhhccccchhee-------ecCCCCChhhhccccchHHhhhHHH
Confidence 689999999999999999988888655431100 00000111111 2211111111 12455566556
Q ss_pred HHHHhhhhcc-cccCchhhHHHHHHHHHHHHH
Q 001381 1011 RVLLSGLVIS-IGGLQESLRKASISALLEYLQ 1041 (1089)
Q Consensus 1011 ~~~l~Glv~S-aG~~teslv~~S~~aL~~y~~ 1041 (1089)
..-..|+..+ +.++..+++.-...+-+.|-+
T Consensus 803 ~~~f~~l~~~~~~~lg~Dla~~~~s~~ia~s~ 834 (993)
T COG5234 803 LQAFYGLTVFTADGLGSDLAVKCFSFYIAYSY 834 (993)
T ss_pred HHHHhcCChhhhhccccchhhhhhHHHHHHHH
Confidence 6666666655 555566665555555555544
No 141
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=48.90 E-value=81 Score=33.62 Aligned_cols=104 Identities=17% Similarity=0.210 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHhccc-C---CCCCCccceeccccc-----chhhhHHHHHHHHHHHHhh
Q 001381 510 ILEQIAPHLLTVACYDREVNCRRAAAAAFQENVGRQ-G---NYPHGIDIVNTADYF-----SLSSRVYSYLHVAVFIAQY 580 (1089)
Q Consensus 510 ~~~~l~~~Ll~~alfD~e~~iRRaAsAAlQE~vGR~-g---~~p~GI~il~~~d~~-----~v~~r~~a~~~va~~va~~ 580 (1089)
+++.++..++ .-...+==.+|-.|..+||-++... . .+||.=.+....... ....-..+|-.+. .+-++
T Consensus 4 ~~~~~~~~ll-rqa~EKiDrvR~~A~~~l~~ll~~~~~~~~~ip~~~~L~~i~~~~~~~~~~w~~~~~~F~~l~-~LL~~ 81 (193)
T PF12612_consen 4 LVQQIIGGLL-RQAAEKIDRVREVAGKCLQRLLHSQDPTIPHIPHREELQDIFPSESEASLNWSSSSEYFPRLV-KLLDL 81 (193)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCcHHHHHHHcccccccccccCCHHHHHHHHH-HHhcc
Confidence 3445555544 4445555689999999999999333 1 345443332222111 1344555565555 55667
Q ss_pred hcchHHHHHHHHhCccCCCCHHHHHHHHHHHHHHHc
Q 001381 581 EGYLYPFVDELLYNKICHWDKVLRELAAEALSALVK 616 (1089)
Q Consensus 581 ~~Y~~~li~~Ll~~~l~h~D~~iR~laa~aL~~L~~ 616 (1089)
+.|+++++..|+- .++.-...+.+-|..||-..+.
T Consensus 82 ~~y~~~ll~Glv~-S~G~~tesl~~~s~~AL~~~~~ 116 (193)
T PF12612_consen 82 PEYRYSLLSGLVV-SAGGLTESLVRASSAALLSYLR 116 (193)
T ss_pred HHHHHHHHhHHHh-cCCCCchhHHHHHHHHHHHHHH
Confidence 8999999999996 7888888999999999988875
No 142
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=48.72 E-value=2.4e+02 Score=36.71 Aligned_cols=182 Identities=20% Similarity=0.233 Sum_probs=100.3
Q ss_pred HHHHHHhhcCCC-ChhHHHHHHHHHHHHHhh-----hCcchhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHHhcCCCCC
Q 001381 385 IIEILLSGLRDT-DTVVRWSAAKGIGRITSC-----LTSSLSEEVFSSVLELFSPGEGDGSWHGGCLALAELARRGLLLP 458 (1089)
Q Consensus 385 iI~~ll~~L~d~-dt~vR~saAK~l~rI~~~-----L~~~~a~~vi~~il~~l~~~~~~~~wHg~~LaLael~~~~ll~p 458 (1089)
=+..||++|... |.--...+.+-+.....- |..-.++++|+.++.+++...+....--+|=||.+|+- .+|
T Consensus 168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~e---vlP 244 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCE---VLP 244 (1051)
T ss_pred HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHh---hcc
Confidence 456777777754 777777777777665543 33345788999999999766543433446777777765 234
Q ss_pred Ccccc-----hHHHHHHhhhhhccccccCCChhhhhhhhHHHHHhhhccCccchhHHHHHHHHHHHHHHhcCCCchhhHH
Q 001381 459 SSLPK-----VVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRA 533 (1089)
Q Consensus 459 ~~l~~-----il~~i~~~L~f~~r~~~~svG~~VRDAacfi~WslaR~~~~~~l~~~~~~l~~~Ll~~alfD~e~~iRRa 533 (1089)
+.... +||++..=| .+ -+.....++....| |..-||=
T Consensus 245 ~S~a~vV~~~aIPvl~~kL-----------------------------~~-IeyiDvAEQ~LqAL--------E~iSR~H 286 (1051)
T KOG0168|consen 245 RSSAIVVDEHAIPVLLEKL-----------------------------LT-IEYIDVAEQSLQAL--------EKISRRH 286 (1051)
T ss_pred chhheeecccchHHHHHhh-----------------------------hh-hhhhHHHHHHHHHH--------HHHHhhc
Confidence 33222 344432111 00 00011112222221 2233333
Q ss_pred HHHHHHHHhcccCCCCCCc-cceecccccchhhhHHHHHHHHHHHHhhh----cchHHHHHHHHhCccCCCCHHHHHHHH
Q 001381 534 AAAAFQENVGRQGNYPHGI-DIVNTADYFSLSSRVYSYLHVAVFIAQYE----GYLYPFVDELLYNKICHWDKVLRELAA 608 (1089)
Q Consensus 534 AsAAlQE~vGR~g~~p~GI-~il~~~d~~~v~~r~~a~~~va~~va~~~----~Y~~~li~~Ll~~~l~h~D~~iR~laa 608 (1089)
.-|-|| ..|| ..++..|||+++--++|...++.--.+.+ .|.-..++-|. ..+.+.|...-+-++
T Consensus 287 ~~AiL~---------AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~ealPlL~-~lLs~~D~k~ies~~ 356 (1051)
T KOG0168|consen 287 PKAILQ---------AGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVMEALPLLT-PLLSYQDKKPIESVC 356 (1051)
T ss_pred cHHHHh---------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHH-HHHhhccchhHHHHH
Confidence 333332 2233 45778899999877777544433322331 23333444333 367789999999988
Q ss_pred HHHHHHHcc
Q 001381 609 EALSALVKY 617 (1089)
Q Consensus 609 ~aL~~L~~~ 617 (1089)
-++.+++..
T Consensus 357 ic~~ri~d~ 365 (1051)
T KOG0168|consen 357 ICLTRIADG 365 (1051)
T ss_pred HHHHHHHHh
Confidence 888888753
No 143
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=48.62 E-value=18 Score=25.96 Aligned_cols=14 Identities=43% Similarity=0.712 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHh
Q 001381 400 VRWSAAKGIGRITS 413 (1089)
Q Consensus 400 vR~saAK~l~rI~~ 413 (1089)
||+.||++||+|..
T Consensus 1 VR~~Aa~aLg~igd 14 (27)
T PF03130_consen 1 VRRAAARALGQIGD 14 (27)
T ss_dssp HHHHHHHHHGGG-S
T ss_pred CHHHHHHHHHHcCC
Confidence 79999999999987
No 144
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.12 E-value=5.9e+02 Score=36.25 Aligned_cols=107 Identities=19% Similarity=0.269 Sum_probs=72.5
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCcchhhhhHHHHHHHhC-CCChhhhhhHHHHhhccchHhhh----hhHH
Q 001381 722 LNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLT-DPNPAIRRGSALALGVLPYELLA----NSWR 796 (1089)
Q Consensus 722 L~~~L~~~~~~V~~aAa~Al~~l~~~y~~~~~~~~~~~~v~~~~~~L~-s~~~~~r~G~a~aLG~lp~~~~~----~~~~ 796 (1089)
+...|..+++-.+.++++|+..+.+.+-. ......+.+..++.+. ...+..|.|..+|+|.+.+..-. .+..
T Consensus 881 ~~~sl~~~~p~~rc~~~ea~arLaq~v~~---~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~ 957 (2067)
T KOG1822|consen 881 IVNSLINPNPKLRCAAAEALARLAQVVGS---APFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLN 957 (2067)
T ss_pred HhhhhccCChHHHHHHHHHHHHHHHhccc---cchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcc
Confidence 34456778888899999999988776521 2234678888888886 67789999999999999876632 1222
Q ss_pred HHHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHhhhcc
Q 001381 797 DVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQ 836 (1089)
Q Consensus 797 ~i~~~L~~~~~~~~~~~~~d~e~R~~al~sL~~i~~~~g~ 836 (1089)
.-+..|..... +...+..+.+++.+++-+..+.|.
T Consensus 958 t~v~illal~~-----Ds~~p~VqtwSL~al~~i~~s~~p 992 (2067)
T KOG1822|consen 958 TSVSILLALAT-----DSTSPVVQTWSLHALALILDSSGP 992 (2067)
T ss_pred cHHHHHHHHhh-----cCCCchhhhhHHHHHHHHHcCCCc
Confidence 21212222211 234568899999999988766554
No 145
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=47.50 E-value=2.3e+02 Score=29.48 Aligned_cols=127 Identities=13% Similarity=0.161 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhCcch----hhhHHHHHHhhcCCCCCCcchHHHHHHHHHHHhcCC
Q 001381 380 DILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSL----SEEVFSSVLELFSPGEGDGSWHGGCLALAELARRGL 455 (1089)
Q Consensus 380 e~vE~iI~~ll~~L~d~dt~vR~saAK~l~rI~~~L~~~~----a~~vi~~il~~l~~~~~~~~wHg~~LaLael~~~~l 455 (1089)
..+...+..+..-|++++..-||.+..=++.++..=+++. +.+-+..++..++..++.......|-+|+.+..+.-
T Consensus 21 ~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~ 100 (165)
T PF08167_consen 21 SALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIR 100 (165)
T ss_pred HHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 5688888889999999999999999999988888865543 567888899999887777778888888888765532
Q ss_pred CCC--------CcccchHHHHHHhhhhhccccccCCChhhhhhhhHHHHHhhhccCccchhHHHHHHHHH
Q 001381 456 LLP--------SSLPKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPH 517 (1089)
Q Consensus 456 l~p--------~~l~~il~~i~~~L~f~~r~~~~svG~~VRDAacfi~WslaR~~~~~~l~~~~~~l~~~ 517 (1089)
-.| +.++.+++.+++-+. . ..+.+.++-.+=.+.+.|++ .+.|+...+-.-
T Consensus 101 ~~p~l~Rei~tp~l~~~i~~ll~l~~---~-------~~~~~~~l~~L~~ll~~~pt-t~rp~~~ki~~~ 159 (165)
T PF08167_consen 101 GKPTLTREIATPNLPKFIQSLLQLLQ---D-------SSCPETALDALATLLPHHPT-TFRPFANKIESA 159 (165)
T ss_pred CCCchHHHHhhccHHHHHHHHHHHHh---c-------cccHHHHHHHHHHHHHHCCc-cccchHHHHHHH
Confidence 222 335666655544331 1 35667777777777777775 577776655443
No 146
>PF08568 Kinetochor_Ybp2: Uncharacterised protein family, YAP/Alf4/glomulin; InterPro: IPR013877 This is a family of proteins integrally involved in the central kinetochore. In baker's yeast the protein seems to be part of a macromolecular kinetochore complex and appears to contribute to the proper associations among the central kinetochore sub-complexes and the kinetochore-specific nucleosome. The family is localised in such a way as to bridge the COMA and Ndc80 complexes onto the centromeric nucleosome []. This family also includes aberrant root formation protein 4 and glomulin. Aberrant root formation protein 4 (Alf4) of Arabidopsis thaliana (Mouse-ear cress) is required for the initiation of lateral roots independent from auxin signalling. It may also function in maintaining the pericycle in the mitotically competent state needed for lateral root formation []. Glomulin (FAP68) is essential for normal development of the vasculature and may represent a naturally occurring ligand of the immunophilins FKBP59 and FKBP12 [, ].
Probab=45.24 E-value=3.4e+02 Score=34.54 Aligned_cols=106 Identities=18% Similarity=0.210 Sum_probs=67.0
Q ss_pred CcchHHHHHHHHHHH--hcCCCCCC-cccchHHHHHHhhhhhcccccc--CCChhhhhhhhHHHHHhhhccC--ccch-h
Q 001381 437 DGSWHGGCLALAELA--RRGLLLPS-SLPKVVPVIVKALHYDIRRGSH--SVGSHVRDAAAYVCWAFGRAYC--HTDM-R 508 (1089)
Q Consensus 437 ~~~wHg~~LaLael~--~~~ll~p~-~l~~il~~i~~~L~f~~r~~~~--svG~~VRDAacfi~WslaR~~~--~~~l-~ 508 (1089)
+..-||..+-.|... ..+-+.|. .+++.+-+..+-+ ...... ..-..+.|+..|..|-.-.... ...+ .
T Consensus 360 pl~~~G~llL~~~~~~~~~~~~~~~~~~~d~i~l~lr~~---~~~~~~~~~~~~gl~d~~~~l~~~~~~~~~~~~~~l~~ 436 (633)
T PF08568_consen 360 PLSTSGCLLLLANMYFETSDHLCPIISFPDHIYLLLRFL---TPSLQSPSFQNKGLEDALLFLLWVALTSSSIELSELPS 436 (633)
T ss_pred CCCcchHHHHHHHHHHhccCCCCccccHHHHHHHHHHhc---CccccchhhcchhHHHHHHHHHHHhcCCcccccccCCH
Confidence 455678555555443 22333333 3566666664443 211111 1125589999999987766665 2222 3
Q ss_pred HHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHhccc
Q 001381 509 NILEQIAPHLLTVACYDREVNCRRAAAAAFQENVGRQ 545 (1089)
Q Consensus 509 ~~~~~l~~~Ll~~alfD~e~~iRRaAsAAlQE~vGR~ 545 (1089)
......+..|+.++++-++.++|+.+...++..+-.+
T Consensus 437 ~~~~~~~q~L~~i~~~~p~~~lR~~~~~ll~~iL~~~ 473 (633)
T PF08568_consen 437 EVFMQFLQALLLISVYCPSPELRKIAFTLLTRILHLF 473 (633)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHC
Confidence 4566788899999999999999999999888775544
No 147
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=43.50 E-value=39 Score=26.35 Aligned_cols=29 Identities=28% Similarity=0.123 Sum_probs=24.3
Q ss_pred HHHHHHhCccCCCCHHHHHHHHHHHHHHHc
Q 001381 587 FVDELLYNKICHWDKVLRELAAEALSALVK 616 (1089)
Q Consensus 587 li~~Ll~~~l~h~D~~iR~laa~aL~~L~~ 616 (1089)
.++.|+. .+.|.|.++|+-|+.||++|+.
T Consensus 13 ~i~~Lv~-ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 13 GIPPLVQ-LLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHHH-HTTSSSHHHHHHHHHHHHHHHT
T ss_pred cHHHHHH-HHcCCCHHHHHHHHHHHHHHhC
Confidence 5666775 6779999999999999999873
No 148
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=43.28 E-value=1.3e+03 Score=33.43 Aligned_cols=92 Identities=18% Similarity=0.241 Sum_probs=58.2
Q ss_pred hHHHHHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHhhhccccccccccCCcchhhhhhhhHHHHHHHHHHhc----c
Q 001381 794 SWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKAL----D 869 (1089)
Q Consensus 794 ~~~~i~~~L~~~~~~~~~~~~~d~e~R~~al~sL~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~L----~ 869 (1089)
.|-.++..|...+ .+.+.|.|..|++.|=+++...|....+ ......+..|+-.++.-+ +
T Consensus 1344 lW~pLL~~Ls~l~------~D~RlEVR~~ALqtLF~iL~~yG~~Fs~----------~~W~~if~~VLFPIFd~l~~~~~ 1407 (1780)
T PLN03076 1344 FWFPLLAGLSELS------FDPRPEIRKSALQVLFDTLRNHGHLFSL----------PLWERVFESVLFPIFDYVRHAID 1407 (1780)
T ss_pred HHHHHHHHHHHHh------cCCcHHHHHHHHHHHHHHHHHhhccCCH----------HHHHHHHHHHHHHHHHHHHHhhc
Confidence 4566777776665 3457899999999999999887765322 222333444433333222 1
Q ss_pred cCC-----------CCCCCCcchHHHHHHHHHHHHHHHHhhcc
Q 001381 870 DYS-----------VDNRGDVGSWVREAAVDGLEICTYILCKR 901 (1089)
Q Consensus 870 DYT-----------~D~RGDVGSwVR~aa~~~l~~l~~ll~~~ 901 (1089)
.-. ..+..|.-.|..+.+..+++.++.+++++
T Consensus 1408 ~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~f 1450 (1780)
T PLN03076 1408 PSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKF 1450 (1780)
T ss_pred cccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 101 11123677899999999999998887643
No 149
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=43.14 E-value=2.5e+02 Score=31.57 Aligned_cols=149 Identities=17% Similarity=0.139 Sum_probs=82.3
Q ss_pred hhhHHHHHHHhC-CCChhhhhhHHHHhhccchHhhhhh-HH--HHHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHhh
Q 001381 758 GGISLKYMEQLT-DPNPAIRRGSALALGVLPYELLANS-WR--DVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCET 833 (1089)
Q Consensus 758 ~~~v~~~~~~L~-s~~~~~r~G~a~aLG~lp~~~~~~~-~~--~i~~~L~~~~~~~~~~~~~d~e~R~~al~sL~~i~~~ 833 (1089)
.+-+++++..|+ +.+|..++-+..++|....+-.... +. ..+. ++.... +..+...|..|+.+|..+...
T Consensus 11 ~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~-lI~~lL-----~~p~~~vr~~AL~aL~Nls~~ 84 (254)
T PF04826_consen 11 AQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGIS-LIGSLL-----NDPNPSVREKALNALNNLSVN 84 (254)
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHH-HHHHHc-----CCCChHHHHHHHHHHHhcCCC
Confidence 355678888887 5677777777777777765443211 11 1111 122221 456789999999999875322
Q ss_pred hccccccccccCCcchhhhhhhhHHHHHHHHHHhcccCCCCCCCCcchHHHHHHHHHHHHHHHHhhccCCCCCCCCCccc
Q 001381 834 LTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEICTYILCKRDFVPSPEKPQEV 913 (1089)
Q Consensus 834 ~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~L~DYT~D~RGDVGSwVR~aa~~~l~~l~~ll~~~~~~~~~~~~~~~ 913 (1089)
.... ...+.++.++.+.+.. + ...|-|..+++++|..+. +.
T Consensus 85 ~en~-------------~~Ik~~i~~Vc~~~~s----~------~lns~~Q~agLrlL~nLt--v~-------------- 125 (254)
T PF04826_consen 85 DENQ-------------EQIKMYIPQVCEETVS----S------PLNSEVQLAGLRLLTNLT--VT-------------- 125 (254)
T ss_pred hhhH-------------HHHHHHHHHHHHHHhc----C------CCCCHHHHHHHHHHHccC--CC--------------
Confidence 1100 1111223333333322 2 345667778888876542 11
Q ss_pred cccCCCCccccccccCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhh
Q 001381 914 KSELPGNVTAEKTLFDANLATNLVAGIVKQAVEKMDKLREAAAKVLRRILY 964 (1089)
Q Consensus 914 ~~~~~~~~~~~~~~~~~~~~~~l~~~llrq~~EkiD~vR~~A~~~L~~l~~ 964 (1089)
.. ...++...+..++++..+---++|..+.++|..+-.
T Consensus 126 --------~~-----~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~ 163 (254)
T PF04826_consen 126 --------ND-----YHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSE 163 (254)
T ss_pred --------cc-----hhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhcc
Confidence 00 012334455566666666666799999999888843
No 150
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=43.09 E-value=5.5e+02 Score=29.19 Aligned_cols=104 Identities=16% Similarity=0.172 Sum_probs=65.5
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCcchhhhhHHHHHHHhCCCChhhhhhHHHHhhccchHhh----
Q 001381 716 RSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLTDPNPAIRRGSALALGVLPYELL---- 791 (1089)
Q Consensus 716 ~~~~~~L~~~L~~~~~~V~~aAa~Al~~l~~~y~~~~~~~~~~~~v~~~~~~L~s~~~~~r~G~a~aLG~lp~~~~---- 791 (1089)
.-+..++.-++++++..||+.|.++++-++.. +.+...+.+..+.+.++.++...+.-+..+ +...+.
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Ll-----d~~~a~~~l~l~~~~~~~~~~~v~~~al~~---l~Dll~~~g~ 97 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLL-----DKELAKEHLPLFLQALQKDDEEVKITALKA---LFDLLLTHGI 97 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh-----ChHHHHHHHHHHHHHHHhCCHHHHHHHHHH---HHHHHHHcCc
Confidence 44556677788999999999999999865543 233346667777777755555555533333 322221
Q ss_pred ---h--h------hHHHHHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHhh
Q 001381 792 ---A--N------SWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCET 833 (1089)
Q Consensus 792 ---~--~------~~~~i~~~L~~~~~~~~~~~~~d~e~R~~al~sL~~i~~~ 833 (1089)
. . ....+.+.+.+.. ...+.+.|..|++++.+++-.
T Consensus 98 ~~~~~~~~~~~~~~~~~l~~~l~~~l------~~~~~~~~~~a~EGl~KLlL~ 144 (298)
T PF12719_consen 98 DIFDSESDNDESVDSKSLLKILTKFL------DSENPELQAIAVEGLCKLLLS 144 (298)
T ss_pred hhccchhccCccchHhHHHHHHHHHH------hcCCHHHHHHHHHHHHHHHhc
Confidence 1 0 1234555555544 233788999999999998753
No 151
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=42.92 E-value=1.5e+02 Score=38.63 Aligned_cols=154 Identities=14% Similarity=0.095 Sum_probs=112.2
Q ss_pred HHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhCcch----hhhHHHHHHhhcCCCCCCcchHHHHHHHHHHHhcCCC
Q 001381 381 ILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSL----SEEVFSSVLELFSPGEGDGSWHGGCLALAELARRGLL 456 (1089)
Q Consensus 381 ~vE~iI~~ll~~L~d~dt~vR~saAK~l~rI~~~L~~~~----a~~vi~~il~~l~~~~~~~~wHg~~LaLael~~~~ll 456 (1089)
..-+|++.|.+....-+..+|----++|+.+..+.|+.. ...+.+=+++.++-.+-+...|+.-..=--+...+-+
T Consensus 864 fF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL 943 (1030)
T KOG1967|consen 864 FFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETL 943 (1030)
T ss_pred HHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcccc
Confidence 346788888888887778888889999999999999753 3557777777776554444455522222223344557
Q ss_pred CCCcccchHHHHHHhhhhhccccccCCChhhhhhhhHHHHHhhhccCccchhHHHHHHHHHHHHHHhcCCCchhhHHHHH
Q 001381 457 LPSSLPKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAAAA 536 (1089)
Q Consensus 457 ~p~~l~~il~~i~~~L~f~~r~~~~svG~~VRDAacfi~WslaR~~~~~~l~~~~~~l~~~Ll~~alfD~e~~iRRaAsA 536 (1089)
.++++..++|.++ .-.. .+.+.-..||-.|--..-++.|...+..+.||...+...| .-.+=|+--.||+=|+.
T Consensus 944 ~t~~~~Tlvp~lL---sls~--~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al-~k~LdDkKRlVR~eAv~ 1017 (1030)
T KOG1967|consen 944 QTEHLSTLVPYLL---SLSS--DNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRAL-IKILDDKKRLVRKEAVD 1017 (1030)
T ss_pred chHHHhHHHHHHH---hcCC--CCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHh-hhccCcHHHHHHHHHHH
Confidence 7888899998874 2111 1111125599999999999999988888889988888886 47899999999999988
Q ss_pred HHHH
Q 001381 537 AFQE 540 (1089)
Q Consensus 537 AlQE 540 (1089)
+=|+
T Consensus 1018 tR~~ 1021 (1030)
T KOG1967|consen 1018 TRQN 1021 (1030)
T ss_pred Hhhh
Confidence 8775
No 152
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=42.02 E-value=49 Score=31.25 Aligned_cols=49 Identities=27% Similarity=0.461 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhCcchhhhHHHHHHhhcC
Q 001381 380 DILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSLSEEVFSSVLELFS 432 (1089)
Q Consensus 380 e~vE~iI~~ll~~L~d~dt~vR~saAK~l~rI~~~L~~~~a~~vi~~il~~l~ 432 (1089)
..++.++..++..|+|.|+.|=.+|-|||+-++..-|. .+++.+++.+.
T Consensus 39 ~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~----~vl~~L~~~y~ 87 (92)
T PF10363_consen 39 IDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD----EVLPILLDEYA 87 (92)
T ss_pred hhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH----HHHHHHHHHHh
Confidence 55899999999999999999999999999999999875 46666666553
No 153
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=41.63 E-value=2.1e+02 Score=30.96 Aligned_cols=151 Identities=18% Similarity=0.270 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhCcchhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHHhcCCCCCC
Q 001381 380 DILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSLSEEVFSSVLELFSPGEGDGSWHGGCLALAELARRGLLLPS 459 (1089)
Q Consensus 380 e~vE~iI~~ll~~L~d~dt~vR~saAK~l~rI~~~L~~~~a~~vi~~il~~l~~~~~~~~wHg~~LaLael~~~~ll~p~ 459 (1089)
..+..++..+-+--.+.+...|-.+=+.+|..+..++++..=++++--++.=+......+| +|- +.|.... ..
T Consensus 37 ~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL~~lPLnl~~~~~~~~~raW---LLP---lLr~~i~-~~ 109 (198)
T PF08161_consen 37 PLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVLSILPLNLDNADDSQPGRAW---LLP---LLRDHIR-NA 109 (198)
T ss_pred HHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHHHHCCCCccCCCcCCcccch---hHH---HHHHhcc-CC
Confidence 4566666666555556667788888888888888887664333333222210111234566 222 2333321 12
Q ss_pred c----ccchHHHHHHhhhhhcccc-----ccCCChhhhhhhhHHHHHhhhccC--ccchhHHHHHHHHHHHHHHhcCCCc
Q 001381 460 S----LPKVVPVIVKALHYDIRRG-----SHSVGSHVRDAAAYVCWAFGRAYC--HTDMRNILEQIAPHLLTVACYDREV 528 (1089)
Q Consensus 460 ~----l~~il~~i~~~L~f~~r~~-----~~svG~~VRDAacfi~WslaR~~~--~~~l~~~~~~l~~~Ll~~alfD~e~ 528 (1089)
. ...++|... .++++.. ..++...+=++-..=+|++--.|. |.++......++..| ...++|+ .
T Consensus 110 ~L~fF~~~~lPla~---~~~~~~~~~~~~~~~~~ak~~~~l~~QlWslLP~FC~~P~D~~~~F~~~a~~L-~~~L~~~-~ 184 (198)
T PF08161_consen 110 SLSFFVEEFLPLAR---RLRQKAQKASEAGKSVEAKIYETLVQQLWSLLPGFCNYPTDLAESFPSFAKLL-GNALYDQ-P 184 (198)
T ss_pred ChHHHHHHHHHHHH---HHHHHHHHHhhccchHHHHHHHHHHHHHHHHhHHhcCCcccHHHHHHHHHHHH-HHHHhcC-c
Confidence 2 244666653 2333222 235666666777788899999988 457766666666654 6888884 8
Q ss_pred hhhHHHHHHHHHHh
Q 001381 529 NCRRAAAAAFQENV 542 (1089)
Q Consensus 529 ~iRRaAsAAlQE~v 542 (1089)
.+|-....|||.+|
T Consensus 185 ~LR~~Ic~aL~~Lv 198 (198)
T PF08161_consen 185 DLRPIICQALRRLV 198 (198)
T ss_pred chHHHHHHHHHHHC
Confidence 99999999999875
No 154
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=41.57 E-value=3.7e+02 Score=34.31 Aligned_cols=133 Identities=20% Similarity=0.174 Sum_probs=85.7
Q ss_pred HHHHHHHHhCccCCCCHHHHHHHHHHHHHHHccCchhhHHHHHHHhccccC-CCChhhHHHHHHHHHHHHHHHhcccccC
Q 001381 585 YPFVDELLYNKICHWDKVLRELAAEALSALVKYDPEYFANFILEKLTPFTL-STDLCTRHGATLAAGEVVLALCKYDYAL 663 (1089)
Q Consensus 585 ~~li~~Ll~~~l~h~D~~iR~laa~aL~~L~~~~~~~~~~~vlp~Ll~~l~-~~d~~~RHG~lLalaevl~~l~~~~~~~ 663 (1089)
.++++.+....-.|.|+++...|.-+|.++.-...+++.. -+|-++..+. .++..+|-.+++++|+.+-.+..
T Consensus 894 ~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~e-hlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~----- 967 (1128)
T COG5098 894 KPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCSE-HLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNT----- 967 (1128)
T ss_pred hHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHhhCCCcceeccceeeccccceehhh-----
Confidence 4688888876677999999999999999999888777765 4788887665 78889999999999999866542
Q ss_pred ChhHHHHHHhhhHHHHhhhhccCcchH--HHHHHHHHHHHHhhhcC-CCCchhhHHHHHHHHHHhcCCCcHHHHHHHHH
Q 001381 664 PADKQKIVAGIVPGIEKARLYRGKGGE--IMRSAVSRFIECISLSF-VSLPEKTKRSLLDTLNENLRHPNSQIQNAAVK 739 (1089)
Q Consensus 664 ~~~~~~~i~~i~~~~~~~~l~r~~~ge--lir~a~~~lI~~ls~~~-lp~~~~~~~~~~~~L~~~L~~~~~~V~~aAa~ 739 (1089)
..++... -+||..+.+ -++..+...|..+-.++ +.+ ......+-.+|.+++..|-+.|--
T Consensus 968 ---~~de~t~--------yLyrrL~De~~~V~rtclmti~fLilagq~KV-----KGqlg~ma~~L~deda~Isdmar~ 1030 (1128)
T COG5098 968 ---TADEHTH--------YLYRRLGDEDADVRRTCLMTIHFLILAGQLKV-----KGQLGKMALLLTDEDAEISDMARH 1030 (1128)
T ss_pred ---hhHHHHH--------HHHHHhcchhhHHHHHHHHHHHHHHHccceee-----ccchhhhHhhccCCcchHHHHHHH
Confidence 1222111 123333322 24444444443322221 111 122333556788888888776643
No 155
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=40.40 E-value=6.4e+02 Score=29.16 Aligned_cols=161 Identities=15% Similarity=0.062 Sum_probs=79.8
Q ss_pred HHHHHHHHhCccCCCCHHHHHHHHHHHHHHHc----cCchhhHHHHHHHhccccC----CCChhhHHHHHHHHHHHHHHH
Q 001381 585 YPFVDELLYNKICHWDKVLRELAAEALSALVK----YDPEYFANFILEKLTPFTL----STDLCTRHGATLAAGEVVLAL 656 (1089)
Q Consensus 585 ~~li~~Ll~~~l~h~D~~iR~laa~aL~~L~~----~~~~~~~~~vlp~Ll~~l~----~~d~~~RHG~lLalaevl~~l 656 (1089)
..+++.+.+ ++.+....+|+.=..+++.+.. .....+...++|.+++.+. ++-...--|.+.+..-++. .
T Consensus 60 ~~~~~~~~k-Gl~~kk~~vR~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~-~ 137 (339)
T PF12074_consen 60 KKVVDAFKK-GLKDKKPPVRRAWLLCLGEALWESPNSDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLA-L 137 (339)
T ss_pred HHHHHHHHH-HhcCCCCcHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHH-h
Confidence 566777765 8888888899999999999986 4445566677888776542 2111111122222222222 1
Q ss_pred hcccccC-Ch-hHHHH---HHhhhHHHHhhhhccCcchHHHHHHHHHHHHHhhhcCCCCc-hhhHHHHHHHHHHhcCCC-
Q 001381 657 CKYDYAL-PA-DKQKI---VAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLP-EKTKRSLLDTLNENLRHP- 729 (1089)
Q Consensus 657 ~~~~~~~-~~-~~~~~---i~~i~~~~~~~~l~r~~~gelir~a~~~lI~~ls~~~lp~~-~~~~~~~~~~L~~~L~~~- 729 (1089)
.....+. +. ..... ...-...+...++|....++--..-+++++..+.....+.. .+....|-..+.-.+.++
T Consensus 138 ~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~ 217 (339)
T PF12074_consen 138 SSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKLASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSN 217 (339)
T ss_pred ccccchhhhhhhhhhhhhccCCCcchhcCHHHHhccCCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCC
Confidence 1000000 00 00000 00001112334455432233222334444444332221111 112345655555556677
Q ss_pred -cHHHHHHHHHHHHHHHHH
Q 001381 730 -NSQIQNAAVKALKPFVQT 747 (1089)
Q Consensus 730 -~~~V~~aAa~Al~~l~~~ 747 (1089)
...||..|.++++.++..
T Consensus 218 ~~~~vR~~A~~~l~~l~~~ 236 (339)
T PF12074_consen 218 VSWKVRRAALSALKKLYAS 236 (339)
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 899999999999887664
No 156
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=39.43 E-value=1.6e+03 Score=34.35 Aligned_cols=159 Identities=20% Similarity=0.092 Sum_probs=93.8
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccC-cc---hh---hhhHHHHHHHhCCCChhhhhhHHHHhhccch
Q 001381 716 RSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAAD-SG---VV---GGISLKYMEQLTDPNPAIRRGSALALGVLPY 788 (1089)
Q Consensus 716 ~~~~~~L~~~L~~~~~~V~~aAa~Al~~l~~~y~~~~~-~~---~~---~~~v~~~~~~L~s~~~~~r~G~a~aLG~lp~ 788 (1089)
..+++.|-+|+++.++.+..+...|+..++..-+..-. .+ .. ..++.++++...+..-..+.|-..+++++..
T Consensus 983 ~i~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~ 1062 (3550)
T KOG0889|consen 983 STFLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIE 1062 (3550)
T ss_pred HHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehh
Confidence 46778889999999999999999999877554322111 11 11 5666677766667777788899999998865
Q ss_pred Hhh----hhhHHHHHHHHhhhccccCC--CCCCCHHHHHHHHHHHHHHHhhhccccccccccCCcchhhhhhhhHHHHHH
Q 001381 789 ELL----ANSWRDVLLKLCSCCLIEEN--PEDRDTEARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMT 862 (1089)
Q Consensus 789 ~~~----~~~~~~i~~~L~~~~~~~~~--~~~~d~e~R~~al~sL~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~ 862 (1089)
.+. ......+++++..-++..+. .+..-.+++.....-+...+..++.. .........++.
T Consensus 1063 ~~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~-------------~~~~~~~~~~~~ 1129 (3550)
T KOG0889|consen 1063 SMPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAE-------------EERAKSAMNVFS 1129 (3550)
T ss_pred hchHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhh-------------HHHHHHHHHHHH
Confidence 553 22233455555444432211 11122233333333332222222110 111234456677
Q ss_pred HHHHhcccCCCCCCCCcchHHHHHHHHHHHHHH
Q 001381 863 SLFKALDDYSVDNRGDVGSWVREAAVDGLEICT 895 (1089)
Q Consensus 863 ~Ll~~L~DYT~D~RGDVGSwVR~aa~~~l~~l~ 895 (1089)
.+...|-+-++ .||+.+++.+..+.
T Consensus 1130 ~lv~eL~npN~--------~VR~~~~~~L~~i~ 1154 (3550)
T KOG0889|consen 1130 PLVLELFNPNS--------DVREFSQKLLRLIS 1154 (3550)
T ss_pred HHHHHHcCCch--------HHHHHHHHHHHHHH
Confidence 77788877655 49999999998765
No 157
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.99 E-value=1e+03 Score=31.06 Aligned_cols=63 Identities=19% Similarity=0.159 Sum_probs=47.9
Q ss_pred CccCCCCHHHHHHHHHHHHHHHccCchhhHHHHHHHhccccCCCChhhHHHHHHHHHHHHHHHh
Q 001381 594 NKICHWDKVLRELAAEALSALVKYDPEYFANFILEKLTPFTLSTDLCTRHGATLAAGEVVLALC 657 (1089)
Q Consensus 594 ~~l~h~D~~iR~laa~aL~~L~~~~~~~~~~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~l~ 657 (1089)
.++.|.+..+---||+++..+....+..+.+ .+..|-..+.++....|..++-.|.++.-+-.
T Consensus 252 s~l~~K~emV~~EaArai~~l~~~~~r~l~p-avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P 314 (865)
T KOG1078|consen 252 SCLRHKSEMVIYEAARAIVSLPNTNSRELAP-AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHP 314 (865)
T ss_pred HHHhchhHHHHHHHHHHHhhccccCHhhcch-HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCC
Confidence 4666999999999999999988766554443 34445556788888999999999999876543
No 158
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.75 E-value=9.8e+02 Score=30.86 Aligned_cols=88 Identities=10% Similarity=0.049 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHhhhcchHHHHHHHHhCccCCCCHHHHHHHHHHHHHHHccCchhhHHHHHHHhccccCCCChhhHHHHHH
Q 001381 568 YSYLHVAVFIAQYEGYLYPFVDELLYNKICHWDKVLRELAAEALSALVKYDPEYFANFILEKLTPFTLSTDLCTRHGATL 647 (1089)
Q Consensus 568 ~a~~~va~~va~~~~Y~~~li~~Ll~~~l~h~D~~iR~laa~aL~~L~~~~~~~~~~~vlp~Ll~~l~~~d~~~RHG~lL 647 (1089)
--|+-++..+.+-.+...-+++.+.+ -|.+-|+....||-.+++++...+-......-+|.++-.-.+ ...+|+-+.|
T Consensus 93 IGYl~is~L~n~n~dl~klvin~ikn-DL~srn~~fv~LAL~~I~niG~re~~ea~~~DI~KlLvS~~~-~~~vkqkaAL 170 (938)
T KOG1077|consen 93 IGYLFISLLLNENSDLMKLVINSIKN-DLSSRNPTFVCLALHCIANIGSREMAEAFADDIPKLLVSGSS-MDYVKQKAAL 170 (938)
T ss_pred HhHHHHHHHHhcchHHHHHHHHHHHh-hhhcCCcHHHHHHHHHHHhhccHhHHHHhhhhhHHHHhCCcc-hHHHHHHHHH
Confidence 34555555554444455555555554 566777777888888888877654221111223444422222 2356666666
Q ss_pred HHHHHHHHHh
Q 001381 648 AAGEVVLALC 657 (1089)
Q Consensus 648 alaevl~~l~ 657 (1089)
++=.+.....
T Consensus 171 clL~L~r~sp 180 (938)
T KOG1077|consen 171 CLLRLFRKSP 180 (938)
T ss_pred HHHHHHhcCc
Confidence 6666655533
No 159
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=38.62 E-value=6.4e+02 Score=28.69 Aligned_cols=93 Identities=18% Similarity=0.209 Sum_probs=66.1
Q ss_pred hhhHHHHHHHhCCCChhhhhhHHHHhhccchHhhhhhHHHHHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHhhhccc
Q 001381 758 GGISLKYMEQLTDPNPAIRRGSALALGVLPYELLANSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQS 837 (1089)
Q Consensus 758 ~~~v~~~~~~L~s~~~~~r~G~a~aLG~lp~~~~~~~~~~i~~~L~~~~~~~~~~~~~d~e~R~~al~sL~~i~~~~g~~ 837 (1089)
++-|..+++++...+...|.-.|+.+|.+..-..-+ .+.+.|... ...+=.|..|.++|+.+..
T Consensus 186 EeaI~al~~~l~~~SalfrhEvAfVfGQl~s~~ai~---~L~k~L~d~--------~E~pMVRhEaAeALGaIa~----- 249 (289)
T KOG0567|consen 186 EEAINALIDGLADDSALFRHEVAFVFGQLQSPAAIP---SLIKVLLDE--------TEHPMVRHEAAEALGAIAD----- 249 (289)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHhhccchhhhH---HHHHHHHhh--------hcchHHHHHHHHHHHhhcC-----
Confidence 677888999998778999999999999996543322 233333222 3356789999999987531
Q ss_pred cccccccCCcchhhhhhhhHHHHHHHHHHhcccCCCCCCCCcchHHHHHHHHHHHHH
Q 001381 838 QENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEIC 894 (1089)
Q Consensus 838 ~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~L~DYT~D~RGDVGSwVR~aa~~~l~~l 894 (1089)
++.++.|...++| --+-||++|.-++..+
T Consensus 250 --------------------e~~~~vL~e~~~D--------~~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 250 --------------------EDCVEVLKEYLGD--------EERVVRESCEVALDML 278 (289)
T ss_pred --------------------HHHHHHHHHHcCC--------cHHHHHHHHHHHHHHH
Confidence 3455666666644 4677999999998765
No 160
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=37.74 E-value=1.1e+03 Score=31.11 Aligned_cols=52 Identities=23% Similarity=0.174 Sum_probs=35.3
Q ss_pred HHHHHHHHhCccCC-CCHHHHHHHHHHHHHHHccCchhhH----HHHHHHhccccCCC
Q 001381 585 YPFVDELLYNKICH-WDKVLRELAAEALSALVKYDPEYFA----NFILEKLTPFTLST 637 (1089)
Q Consensus 585 ~~li~~Ll~~~l~h-~D~~iR~laa~aL~~L~~~~~~~~~----~~vlp~Ll~~l~~~ 637 (1089)
+.++..|+. .+.| .++++.-+|++||-.|+...|..+. ..++|-+++++...
T Consensus 210 ~slvp~Lv~-LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~I 266 (1051)
T KOG0168|consen 210 KSLVPVLVA-LLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTI 266 (1051)
T ss_pred HHHHHHHHH-HHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhh
Confidence 345555554 2332 3589999999999999998886443 24677777777553
No 161
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=37.49 E-value=9e+02 Score=30.09 Aligned_cols=134 Identities=16% Similarity=0.140 Sum_probs=67.4
Q ss_pred CCChhhHHHHHHHHHHHHHHHhcccccCChhHHHHHHhhhHHHHhhhhccCcchHHHHHHHHHHHHHhhhcCCCCchhhH
Q 001381 636 STDLCTRHGATLAAGEVVLALCKYDYALPADKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLPEKTK 715 (1089)
Q Consensus 636 ~~d~~~RHG~lLalaevl~~l~~~~~~~~~~~~~~i~~i~~~~~~~~l~r~~~gelir~a~~~lI~~ls~~~lp~~~~~~ 715 (1089)
..+...|.+++++++.++...........+...+.+.+.+........- .+.+--+.. +|.++...+.| ..+
T Consensus 408 ~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~~~~~---~LkaLGN~g~~---~~i 479 (574)
T smart00638 408 QKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVS--KGDEEEIQL---YLKALGNAGHP---SSI 479 (574)
T ss_pred cccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHh--cCCchheee---HHHhhhccCCh---hHH
Confidence 4566899999999999998765432221111122222212111111110 111122223 33444433333 334
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCcchhhhhHHHHHHHhC--CCChhhhhhHHHHhhcc
Q 001381 716 RSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLT--DPNPAIRRGSALALGVL 786 (1089)
Q Consensus 716 ~~~~~~L~~~L~~~~~~V~~aAa~Al~~l~~~y~~~~~~~~~~~~v~~~~~~L~--s~~~~~r~G~a~aLG~l 786 (1089)
..+...+.. -......+|.+|..||+.+.... + ..+.+.++.... ..++-.|.++..+|--.
T Consensus 480 ~~l~~~l~~-~~~~~~~iR~~Av~Alr~~a~~~----p----~~v~~~l~~i~~n~~e~~EvRiaA~~~lm~t 543 (574)
T smart00638 480 KVLEPYLEG-AEPLSTFIRLAAILALRNLAKRD----P----RKVQEVLLPIYLNRAEPPEVRMAAVLVLMET 543 (574)
T ss_pred HHHHHhcCC-CCCCCHHHHHHHHHHHHHHHHhC----c----hHHHHHHHHHHcCCCCChHHHHHHHHHHHhc
Confidence 445555542 24566789999999998664422 1 233334444432 55666788777776444
No 162
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=36.85 E-value=2.6e+02 Score=29.89 Aligned_cols=69 Identities=16% Similarity=0.161 Sum_probs=45.5
Q ss_pred hhhHHHHHHHhC-CCCh---hhhhhHHHHhhccchHhhhhhHHHHHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHh
Q 001381 758 GGISLKYMEQLT-DPNP---AIRRGSALALGVLPYELLANSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCE 832 (1089)
Q Consensus 758 ~~~v~~~~~~L~-s~~~---~~r~G~a~aLG~lp~~~~~~~~~~i~~~L~~~~~~~~~~~~~d~e~R~~al~sL~~i~~ 832 (1089)
+.+++.|.++|+ ..+| .+++|.--.|-.-.....-+.+.+++.-|..+. ..++.+....++++|..++.
T Consensus 37 ~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL------~tr~~~V~~~~L~~Lq~Lv~ 109 (183)
T PF10274_consen 37 HHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRAL------NTRDPEVFCATLKALQQLVT 109 (183)
T ss_pred hhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH------hCCCHHHHHHHHHHHHHHHH
Confidence 567777888884 3333 567777666655222333344556666666664 56789999999999998843
No 163
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=33.99 E-value=2.5e+02 Score=33.34 Aligned_cols=136 Identities=13% Similarity=0.154 Sum_probs=72.3
Q ss_pred CCHH-HHHHHHHHHHHHHccCchhhHHH---HHHHhccc---cCCCChhhHHHHHHHHHHHHHHHhcccccC--ChhH--
Q 001381 599 WDKV-LRELAAEALSALVKYDPEYFANF---ILEKLTPF---TLSTDLCTRHGATLAAGEVVLALCKYDYAL--PADK-- 667 (1089)
Q Consensus 599 ~D~~-iR~laa~aL~~L~~~~~~~~~~~---vlp~Ll~~---l~~~d~~~RHG~lLalaevl~~l~~~~~~~--~~~~-- 667 (1089)
.|.. -|+.|..-+..|++..+..+... ++..+++. -.+.+|..+.|++..++.+.........+. ....
T Consensus 222 sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~ 301 (370)
T PF08506_consen 222 SDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVD 301 (370)
T ss_dssp S---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-
T ss_pred cccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCccccccccc
Confidence 3444 45555566677887655443322 23333331 235789999999988888764332111110 0010
Q ss_pred HHH--HHhhhHHHHhhhhccCcchHHHHHHHHHHHHHhhhcCCCCchhhHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 001381 668 QKI--VAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLPEKTKRSLLDTLNENLRHPNSQIQNAAVKAL 741 (1089)
Q Consensus 668 ~~~--i~~i~~~~~~~~l~r~~~gelir~a~~~lI~~ls~~~lp~~~~~~~~~~~~L~~~L~~~~~~V~~aAa~Al 741 (1089)
+.. ...+++.+. . ....-.+++..+|+++..... .+| .+.+......+-.+|.+++.-|+.-||-|+
T Consensus 302 v~~Ff~~~v~peL~-~---~~~~~piLka~aik~~~~Fr~-~l~--~~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 302 VVDFFSQHVLPELQ-P---DVNSHPILKADAIKFLYTFRN-QLP--KEQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHHTCHHHH-----SS-S-HHHHHHHHHHHHHHGG-GS---HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHHHhHHHhc-c---cCCCCcchHHHHHHHHHHHHh-hCC--HHHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 111 112223322 0 122345788889999976553 444 566777888889999999999998887653
No 164
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=33.88 E-value=4.5e+02 Score=30.76 Aligned_cols=57 Identities=18% Similarity=0.193 Sum_probs=39.8
Q ss_pred CChhHHHHHHHHHHHHHhhhCcc---hhhhHHHHHHhhcCCCCC-CcchHHHHHHHHHHHh
Q 001381 396 TDTVVRWSAAKGIGRITSCLTSS---LSEEVFSSVLELFSPGEG-DGSWHGGCLALAELAR 452 (1089)
Q Consensus 396 ~dt~vR~saAK~l~rI~~~L~~~---~a~~vi~~il~~l~~~~~-~~~wHg~~LaLael~~ 452 (1089)
..-.+|--||+-++.|+.+.+.. +...|+..+...|.+... -.+.=|+..+|+.|+.
T Consensus 280 ~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~lG~ 340 (343)
T cd08050 280 NHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVGLSALGP 340 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHhCc
Confidence 34588999999999999998754 556677777776644333 3335588888877753
No 165
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=33.06 E-value=1e+03 Score=29.36 Aligned_cols=56 Identities=16% Similarity=0.219 Sum_probs=36.4
Q ss_pred CCCHHHHHHHHHHHHHHHccCchh-----hHHHHHHHhccccCCCChhhHHHHHHHHHHHH
Q 001381 598 HWDKVLRELAAEALSALVKYDPEY-----FANFILEKLTPFTLSTDLCTRHGATLAAGEVV 653 (1089)
Q Consensus 598 h~D~~iR~laa~aL~~L~~~~~~~-----~~~~vlp~Ll~~l~~~d~~~RHG~lLalaevl 653 (1089)
.+.+.+..-..++|+.|+...|.. +...+..++.+...+.|+.+|-.+++-++.++
T Consensus 118 e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v 178 (728)
T KOG4535|consen 118 ESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIV 178 (728)
T ss_pred hcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHH
Confidence 334444455566788888776632 23345566666677888888888877776665
No 166
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.79 E-value=9.2e+02 Score=31.08 Aligned_cols=170 Identities=16% Similarity=0.172 Sum_probs=93.3
Q ss_pred HHHHHHHHHHhcccccCChhHHHHHHhhhHHHHhhhhccCcc--hHHHHHHHHHHHHHhhhcCCCCch---------hhH
Q 001381 647 LAAGEVVLALCKYDYALPADKQKIVAGIVPGIEKARLYRGKG--GEIMRSAVSRFIECISLSFVSLPE---------KTK 715 (1089)
Q Consensus 647 Lalaevl~~l~~~~~~~~~~~~~~i~~i~~~~~~~~l~r~~~--gelir~a~~~lI~~ls~~~lp~~~---------~~~ 715 (1089)
.-+-+++.++... ......+-.++..+.+--+|||.. ...+|..+..+.-. .+|+.+ ..+
T Consensus 148 sk~r~Vl~~F~hq-----kk~~qgVeeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~----~fP~~dpd~~~e~mD~i~ 218 (1005)
T KOG1949|consen 148 SKVREVLSYFHHQ-----KKVRQGVEEMLYRLYKPILWRGLKARNSEVRSNAALLFVE----AFPIRDPDLHAEEMDSII 218 (1005)
T ss_pred HHHHHHHHHHHHH-----HHHhhhHHHHHHHHHhHHHHHhhccCchhhhhhHHHHHHH----hccCCCCCccHHHHHHHH
Confidence 3455666666531 112234455566666777888854 55677777666643 346542 133
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCcchhhhhHHHHHHHhC-CCChhhhhhHHHHhhccchHhhhhh
Q 001381 716 RSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLT-DPNPAIRRGSALALGVLPYELLANS 794 (1089)
Q Consensus 716 ~~~~~~L~~~L~~~~~~V~~aAa~Al~~l~~~y~~~~~~~~~~~~v~~~~~~L~-s~~~~~r~G~a~aLG~lp~~~~~~~ 794 (1089)
+.=...+..-|+++-+.||-.|.+.+...+..|.---++..+.++..+..+.+. +....+|.+...+ +|..+..+.
T Consensus 219 ~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~g---l~~~l~np~ 295 (1005)
T KOG1949|consen 219 QKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKG---LPMILDNPL 295 (1005)
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcC---cHHHHcCcc
Confidence 333445667789999999999998888877766433233333445555555553 4444566644444 444443333
Q ss_pred HHHHHHHHhhhccccCCCCCCCHHHHHHHHHHHHHH
Q 001381 795 WRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSV 830 (1089)
Q Consensus 795 ~~~i~~~L~~~~~~~~~~~~~d~e~R~~al~sL~~i 830 (1089)
--.+++.+..+.++. ..+.-.-.|+++++-|..+
T Consensus 296 sh~~le~~Lpal~~~--l~D~se~VRvA~vd~ll~i 329 (1005)
T KOG1949|consen 296 SHPLLEQLLPALRYS--LHDNSEKVRVAFVDMLLKI 329 (1005)
T ss_pred chhHHHHHHHhcchh--hhccchhHHHHHHHHHHHH
Confidence 223333333333221 1233446788887766543
No 167
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=32.24 E-value=8.8e+02 Score=28.39 Aligned_cols=222 Identities=16% Similarity=0.093 Sum_probs=115.4
Q ss_pred hCccCCCCHHHHHHHHHHHHHHHccCchh----h----HHHHHHHhccccCCCChhhHHHHHHHHHHHHHHHhcccccCC
Q 001381 593 YNKICHWDKVLRELAAEALSALVKYDPEY----F----ANFILEKLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALP 664 (1089)
Q Consensus 593 ~~~l~h~D~~iR~laa~aL~~L~~~~~~~----~----~~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~l~~~~~~~~ 664 (1089)
++++.|.|..+.-|+.+.++.+......+ + -..++|.++.+....|.++-..++-.+..+...
T Consensus 88 QrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialf--------- 158 (524)
T KOG4413|consen 88 QRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALF--------- 158 (524)
T ss_pred HhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc---------
Confidence 47999999999999999999998654321 1 135778888888888777766666555554321
Q ss_pred hhHHHHHHhhhHHH-H---hhhhccCcchHHHHHHHHHHHHHhhhcCCCC--chhhHHHHHHHHHHhcCCCc-HHHHHHH
Q 001381 665 ADKQKIVAGIVPGI-E---KARLYRGKGGEIMRSAVSRFIECISLSFVSL--PEKTKRSLLDTLNENLRHPN-SQIQNAA 737 (1089)
Q Consensus 665 ~~~~~~i~~i~~~~-~---~~~l~r~~~gelir~a~~~lI~~ls~~~lp~--~~~~~~~~~~~L~~~L~~~~-~~V~~aA 737 (1089)
+...+ .++++- . +.+....+..++.|.-+..||-.++..+ |. ..-....+.+.++.-|+... .-|+...
T Consensus 159 paale---aiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiS-pesaneckkSGLldlLeaElkGteDtLVianc 234 (524)
T KOG4413|consen 159 PAALE---AIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSIS-PESANECKKSGLLDLLEAELKGTEDTLVIANC 234 (524)
T ss_pred HHHHH---HhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcC-HHHHhHhhhhhHHHHHHHHhcCCcceeehhhH
Confidence 11111 111110 0 1111112456788888888887665322 11 11123556677776666633 3334322
Q ss_pred HHHHHHHHHHhhhccCcc--hhhhhHHHHHHHhC--CCChhhhhhHHHHhhccchH-h-hhhhHHHHHHHHhhhcccc-C
Q 001381 738 VKALKPFVQTYMVAADSG--VVGGISLKYMEQLT--DPNPAIRRGSALALGVLPYE-L-LANSWRDVLLKLCSCCLIE-E 810 (1089)
Q Consensus 738 a~Al~~l~~~y~~~~~~~--~~~~~v~~~~~~L~--s~~~~~r~G~a~aLG~lp~~-~-~~~~~~~i~~~L~~~~~~~-~ 810 (1089)
.+-+..+.. ..-..+ ..+.+++...+.+. +..|...-.|-...|-+... . ..-.-+.+++.++.++..+ +
T Consensus 235 iElvteLae---teHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfE 311 (524)
T KOG4413|consen 235 IELVTELAE---TEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFE 311 (524)
T ss_pred HHHHHHHHH---HhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHH
Confidence 222222211 111111 22667777777773 44454333222332222110 0 1112234555555443221 1
Q ss_pred CCCCCCHHHHHHHHHHHHHH
Q 001381 811 NPEDRDTEARVNAVRGLVSV 830 (1089)
Q Consensus 811 ~~~~~d~e~R~~al~sL~~i 830 (1089)
..+..|++.--.|+.+++.+
T Consensus 312 miEmnDpdaieaAiDalGil 331 (524)
T KOG4413|consen 312 MIEMNDPDAIEAAIDALGIL 331 (524)
T ss_pred hhhcCCchHHHHHHHHHHhc
Confidence 23566788888888888764
No 168
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.86 E-value=2.4e+02 Score=36.29 Aligned_cols=113 Identities=19% Similarity=0.162 Sum_probs=67.3
Q ss_pred HHHHHHHhCccCCCCHHHHHHHHHHHHHHHccCchhhHHH--HHH----HhccccCCCChhhHHHHHHHHHHHHHHHhcc
Q 001381 586 PFVDELLYNKICHWDKVLRELAAEALSALVKYDPEYFANF--ILE----KLTPFTLSTDLCTRHGATLAAGEVVLALCKY 659 (1089)
Q Consensus 586 ~li~~Ll~~~l~h~D~~iR~laa~aL~~L~~~~~~~~~~~--vlp----~Ll~~l~~~d~~~RHG~lLalaevl~~l~~~ 659 (1089)
..|.-|+. .+.++|..+|..|.+-|..+.+.-|-.+.+. +.| .+..-+.+.--.+|--+++-|.++..+-+..
T Consensus 122 d~I~lll~-~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~I 200 (970)
T KOG0946|consen 122 DNITLLLQ-SLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSI 200 (970)
T ss_pred hhHHHHHH-HHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchH
Confidence 34544554 6779999999999999999998777544321 223 3333334444467888889899988654332
Q ss_pred cccC-ChhHHHHHHhhhHHHHhhhhccCcchHHHHHHHHHHHHHhhh
Q 001381 660 DYAL-PADKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISL 705 (1089)
Q Consensus 660 ~~~~-~~~~~~~i~~i~~~~~~~~l~r~~~gelir~a~~~lI~~ls~ 705 (1089)
.+-. -++..+++.+|+.. . -|..|-++.+-|..++.++-.
T Consensus 201 QKlVAFENaFerLfsIIee---E---Gg~dGgIVveDCL~ll~NLLK 241 (970)
T KOG0946|consen 201 QKLVAFENAFERLFSIIEE---E---GGLDGGIVVEDCLILLNNLLK 241 (970)
T ss_pred HHHHHHHHHHHHHHHHHHh---c---CCCCCcchHHHHHHHHHHHHh
Confidence 1100 12223333333322 2 234566788888888876544
No 169
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.55 E-value=1.8e+02 Score=33.58 Aligned_cols=155 Identities=19% Similarity=0.174 Sum_probs=104.2
Q ss_pred CCchHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhCcchhhh---HHHHHHhhcCCCCCCcchHHHHHHHHHHHh
Q 001381 376 MDVPDILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSLSEE---VFSSVLELFSPGEGDGSWHGGCLALAELAR 452 (1089)
Q Consensus 376 ~~v~e~vE~iI~~ll~~L~d~dt~vR~saAK~l~rI~~~L~~~~a~~---vi~~il~~l~~~~~~~~wHg~~LaLael~~ 452 (1089)
...-+..|..+...+..|.+.|...--.+-+.+.|++..=+..+.++ +|-+|...++...+ ..-..+|.+++++..
T Consensus 80 l~~fd~p~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS-~VsraA~~t~~difs 158 (334)
T KOG2933|consen 80 LSPFDDPEAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRS-AVSRAACMTLADIFS 158 (334)
T ss_pred cCccCcHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHH-HHHHHHHHHHHHHHH
Confidence 33346778889999999999999999999999999999888766554 55555555543322 223568999999854
Q ss_pred cCCCCCCcccchHHHHHHhhhhhccccccCCChhhhhhhhHHHHHhhhccCccchhHHHHHHHHHHHHHHhcCCCchhhH
Q 001381 453 RGLLLPSSLPKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRR 532 (1089)
Q Consensus 453 ~~ll~p~~l~~il~~i~~~L~f~~r~~~~svG~~VRDAacfi~WslaR~~~~~~l~~~~~~l~~~Ll~~alfD~e~~iRR 532 (1089)
.- -+.+.+-+..+...|. .++.. --.-||++|.=++=++...-+|.-+.+. |...+-....++|+
T Consensus 159 ~l---n~~i~~~ld~lv~~Ll---~ka~~-dnrFvreda~kAL~aMV~~vtp~~~L~~--------L~~~~~~~n~r~r~ 223 (334)
T KOG2933|consen 159 SL---NNSIDQELDDLVTQLL---HKASQ-DNRFVREDAEKALVAMVNHVTPQKLLRK--------LIPILQHSNPRVRA 223 (334)
T ss_pred HH---HHHHHHHHHHHHHHHH---hhhcc-cchHHHHHHHHHHHHHHhccChHHHHHH--------HHHHHhhhchhhhh
Confidence 31 1222223322222221 11111 1256899999999999888887433322 34557788999999
Q ss_pred HHHHHHHHHhcccC
Q 001381 533 AAAAAFQENVGRQG 546 (1089)
Q Consensus 533 aAsAAlQE~vGR~g 546 (1089)
-|++-|--.|-|.|
T Consensus 224 ~a~~~~~~~v~rl~ 237 (334)
T KOG2933|consen 224 KAALCFSRCVIRLG 237 (334)
T ss_pred hhhccccccceecc
Confidence 99998877777777
No 170
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.30 E-value=6.7e+02 Score=29.14 Aligned_cols=121 Identities=12% Similarity=0.199 Sum_probs=72.5
Q ss_pred HHHHHHHHHHccCchhh---HHHHHHHhccccCCCChhhHHHHHHHHHHHHHHHhcccccCChhHHHHHHhhhHHHHhhh
Q 001381 606 LAAEALSALVKYDPEYF---ANFILEKLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPADKQKIVAGIVPGIEKAR 682 (1089)
Q Consensus 606 laa~aL~~L~~~~~~~~---~~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~l~~~~~~~~~~~~~~i~~i~~~~~~~~ 682 (1089)
-+-..+..|..++++.+ ...++..+.+.+.+....+---++.+++++...+. ......+...+..+.++
T Consensus 107 dgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln-------~~i~~~ld~lv~~Ll~k- 178 (334)
T KOG2933|consen 107 DGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLN-------NSIDQELDDLVTQLLHK- 178 (334)
T ss_pred hhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhh-
Confidence 33344555555665433 33455566667776655555567888999988775 33333445555555532
Q ss_pred hccCcchHHHHHHHHHHHHHhhhcCCCCchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 001381 683 LYRGKGGEIMRSAVSRFIECISLSFVSLPEKTKRSLLDTLNENLRHPNSQIQNAAVKALK 742 (1089)
Q Consensus 683 l~r~~~gelir~a~~~lI~~ls~~~lp~~~~~~~~~~~~L~~~L~~~~~~V~~aAa~Al~ 742 (1089)
.+....++|+++-+-+.++-....| ...+..|.-++.|.+..++..++.++.
T Consensus 179 --a~~dnrFvreda~kAL~aMV~~vtp------~~~L~~L~~~~~~~n~r~r~~a~~~~~ 230 (334)
T KOG2933|consen 179 --ASQDNRFVREDAEKALVAMVNHVTP------QKLLRKLIPILQHSNPRVRAKAALCFS 230 (334)
T ss_pred --hcccchHHHHHHHHHHHHHHhccCh------HHHHHHHHHHHhhhchhhhhhhhcccc
Confidence 1233457888888877765432222 233444555678999999988776664
No 171
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=29.70 E-value=5e+02 Score=27.85 Aligned_cols=33 Identities=27% Similarity=0.497 Sum_probs=29.8
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhh
Q 001381 382 LEEIIEILLSGLRDTDTVVRWSAAKGIGRITSC 414 (1089)
Q Consensus 382 vE~iI~~ll~~L~d~dt~vR~saAK~l~rI~~~ 414 (1089)
.+-.+..++++|...+-+.|+-|-+|+..+..+
T Consensus 36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~ 68 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLER 68 (183)
T ss_pred hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHh
Confidence 457889999999999999999999999888877
No 172
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=29.64 E-value=7.2e+02 Score=26.55 Aligned_cols=54 Identities=22% Similarity=0.113 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHcc-CchhhHHHHHHHhcccc----------------CCCChhhHHHHHHHHHHHHHHH
Q 001381 602 VLRELAAEALSALVKY-DPEYFANFILEKLTPFT----------------LSTDLCTRHGATLAAGEVVLAL 656 (1089)
Q Consensus 602 ~iR~laa~aL~~L~~~-~~~~~~~~vlp~Ll~~l----------------~~~d~~~RHG~lLalaevl~~l 656 (1089)
.+|..|..+|..+++. ++. ..--.-+.+++.. .+.+.-.|.+++-+++.++++.
T Consensus 1 kvR~~Al~~L~al~k~~~~r-~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gs 71 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKR-SLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGS 71 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCc-eeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHcc
Confidence 3789999999999998 443 2222334444332 3456788898888888888763
No 173
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=29.28 E-value=5.5e+02 Score=25.08 Aligned_cols=35 Identities=11% Similarity=0.061 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHhhhccCcchhhhhHHHHHHHhCC
Q 001381 732 QIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLTD 770 (1089)
Q Consensus 732 ~V~~aAa~Al~~l~~~y~~~~~~~~~~~~v~~~~~~L~s 770 (1089)
-|+...+.++..+....+... -..+++.+++.+++
T Consensus 3 ~i~~kl~~~l~~i~~~~~P~~----Wp~~l~~l~~~~~~ 37 (148)
T PF08389_consen 3 FIRNKLAQVLAEIAKRDWPQQ----WPDFLEDLLQLLQS 37 (148)
T ss_dssp HHHHHHHHHHHHHHHHHTTTT----STTHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHChhh----CchHHHHHHHHhcc
Confidence 466777888887766544321 24566666666544
No 174
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=28.07 E-value=6.7e+02 Score=31.13 Aligned_cols=138 Identities=19% Similarity=0.268 Sum_probs=80.0
Q ss_pred chHHHHHHHHhCccC--CCCH---HHHHHHHHHHHHHHccCchhhHHHHHHHhccccCCCChhhHHHHHHHHHHHHHHHh
Q 001381 583 YLYPFVDELLYNKIC--HWDK---VLRELAAEALSALVKYDPEYFANFILEKLTPFTLSTDLCTRHGATLAAGEVVLALC 657 (1089)
Q Consensus 583 Y~~~li~~Ll~~~l~--h~D~---~iR~laa~aL~~L~~~~~~~~~~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~l~ 657 (1089)
....|++||++++.. +|-. .+|+-...|+.. .|+. +.+.+.+.....+--| +-+++..|.
T Consensus 12 ~~~kl~dWLv~Rr~~~~~w~~~~~~ir~ki~~a~~~----~p~~------~~~~~~l~~~~i~Y~~-----c~~i~~iL~ 76 (507)
T PF05600_consen 12 QYSKLLDWLVDRRHCPKDWQKKLKAIREKINAAIQD----MPEH------DEIVQLLSGSYINYFH-----CKRIVEILK 76 (507)
T ss_pred chhHHHHHHHHcCcCcHHHHHHHHHHHHHHHHHHHh----Ccch------HHHHHhcccCCCCHHH-----HHHHHHHHh
Confidence 346799999997554 5544 344444444443 2321 1122333334344344 345555554
Q ss_pred cccccC-------ChhHHHHHHhhhHHHHhhhhccCcchHHHHHHHHHHHHHhhhcCCCCchhhHHHHHHHHHHhcCCCc
Q 001381 658 KYDYAL-------PADKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLPEKTKRSLLDTLNENLRHPN 730 (1089)
Q Consensus 658 ~~~~~~-------~~~~~~~i~~i~~~~~~~~l~r~~~gelir~a~~~lI~~ls~~~lp~~~~~~~~~~~~L~~~L~~~~ 730 (1089)
+..... +......-..|+..++|..+| +.+++-.|++.+.- .+|...+.+......+.++ ....
T Consensus 77 ~te~~skn~fG~yss~rmk~W~~Iv~~yeK~n~~-------L~E~a~~L~r~v~Y-eIP~lkKqi~k~~q~~~d~-~kk~ 147 (507)
T PF05600_consen 77 QTEADSKNIFGRYSSQRMKDWQEIVKLYEKDNLY-------LAEAAQILVRNVNY-EIPALKKQIAKCQQQLEDL-DKKE 147 (507)
T ss_pred CCCccccceeccccchhHHHHHHHHHHHHhccch-------HHHHHHHHHHHhcc-cchHHHHHHHHHHHHHHHH-HhHH
Confidence 432111 344456667788888877664 66777777776653 4676667778888888887 5566
Q ss_pred HHHHHHHHHHHHHH
Q 001381 731 SQIQNAAVKALKPF 744 (1089)
Q Consensus 731 ~~V~~aAa~Al~~l 744 (1089)
.+.+.++..+...+
T Consensus 148 ~e~~~~~~~~~~~~ 161 (507)
T PF05600_consen 148 EELQRSAAEARERY 161 (507)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666655544
No 175
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=27.74 E-value=61 Score=23.47 Aligned_cols=14 Identities=36% Similarity=0.570 Sum_probs=12.5
Q ss_pred hHHHHHHHHHHHHH
Q 001381 399 VVRWSAAKGIGRIT 412 (1089)
Q Consensus 399 ~vR~saAK~l~rI~ 412 (1089)
.||+.||++||+|.
T Consensus 2 ~vR~~aa~aLg~~~ 15 (30)
T smart00567 2 LVRHEAAFALGQLG 15 (30)
T ss_pred HHHHHHHHHHHHcC
Confidence 58999999999984
No 176
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=27.43 E-value=4.2e+02 Score=27.60 Aligned_cols=119 Identities=15% Similarity=0.110 Sum_probs=64.8
Q ss_pred HHHHHHHHHHccCchhhHHHHHHHhccccCCCChh-hHHHHHHHHHHHHHHHhcccccCChhHHHHHHhhhHHHHhhhhc
Q 001381 606 LAAEALSALVKYDPEYFANFILEKLTPFTLSTDLC-TRHGATLAAGEVVLALCKYDYALPADKQKIVAGIVPGIEKARLY 684 (1089)
Q Consensus 606 laa~aL~~L~~~~~~~~~~~vlp~Ll~~l~~~d~~-~RHG~lLalaevl~~l~~~~~~~~~~~~~~i~~i~~~~~~~~l~ 684 (1089)
++.+-|.++.+..+. +.+.++.++++++.+.... +-| .+-.|+.++...+-.- .+...++..++..+. .+
T Consensus 37 LG~~IL~~~fk~h~~-~r~~Ile~l~~rI~~~s~~~~~~-~idlL~~lv~~~p~~v----le~~~~l~~~ld~l~---~l 107 (158)
T PF14676_consen 37 LGIQILLELFKVHEM-IRSEILEQLLNRIVTKSSSPSSQ-YIDLLSELVRKAPLTV----LECSSKLKELLDYLS---FL 107 (158)
T ss_dssp HHHHHHHHHHHH-GG-GHHHHHHHHHHHHHH--SS--HH-HHHHHHHHHHH-HHHH----S-S-HHHHGGGGGTT---TS
T ss_pred HHHHHHHHHHHHhHH-HHHHHHHHHHHHHHhcCccchhH-HHHHHHHHHHHChHHH----HHHHHHHHHHHHHHH---hC
Confidence 888888888876654 3445666666655332222 223 4677788876654211 122344555555543 11
Q ss_pred cCcchHHHHHHHHHHHHHhhhcCCCCchhhHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 001381 685 RGKGGEIMRSAVSRFIECISLSFVSLPEKTKRSLLDTLNENLRHPNSQIQNAAVKAL 741 (1089)
Q Consensus 685 r~~~gelir~a~~~lI~~ls~~~lp~~~~~~~~~~~~L~~~L~~~~~~V~~aAa~Al 741 (1089)
.+.-+.-+-.|+.-++. ...+..+..+..+...|.+.+.+.|.+|+.++
T Consensus 108 p~~~a~~ll~Al~PLi~--------~s~~lrd~lilvLRKamf~r~~~~R~~Av~Gf 156 (158)
T PF14676_consen 108 PGDVAIGLLRALLPLIK--------FSPSLRDSLILVLRKAMFSRELDARQMAVNGF 156 (158)
T ss_dssp -HHHHHHHHHHHHHHHT--------T-HHHHHHHHHHHHHHTT-SSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHh--------cCHHHHHHHHHHHHHHHccccHHHHHHHHHHh
Confidence 11112223333333332 22456788888999999999999999998776
No 177
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=26.55 E-value=1.3e+03 Score=29.82 Aligned_cols=151 Identities=13% Similarity=0.043 Sum_probs=79.1
Q ss_pred HHHHHHHHhCccCCCCHHHHHHHHHHHHHHHccCchhhHHHHHHHhccccCCCChhhHHHHHHHHHHHHHHHhcccccCC
Q 001381 585 YPFVDELLYNKICHWDKVLRELAAEALSALVKYDPEYFANFILEKLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALP 664 (1089)
Q Consensus 585 ~~li~~Ll~~~l~h~D~~iR~laa~aL~~L~~~~~~~~~~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~l~~~~~~~~ 664 (1089)
+.++..|-...+...|..--+.-+--|.+|....|.-+... +..+...+.+.....|+..+-++|-++..+.+ +
T Consensus 260 edi~~~l~~l~fn~~d~~Gpk~islFl~kls~l~p~i~lrq-~~~~~~LLdses~tlRc~~~EicaN~V~~~~~-----d 333 (1128)
T COG5098 260 EDIPVLLKNLSFNLPDLSGPKDISLFLNKLSELSPGIMLRQ-YEHFDELLDSESFTLRCCFLEICANLVEHFKK-----D 333 (1128)
T ss_pred cccHHHHhhceeecccccChHHHHHHHHHHhhcCchHHHHH-HHHHHHHhcccchhHHHHHHHHHHHHHHHHhc-----c
Confidence 34454444444556676665666677777877777766543 23444556667778888888888888776643 2
Q ss_pred hhHHHH----HHhhhHHHHhhhhccCcchHHHHHHHHHHHHHhhhcCCCCc-hhhHHHHHHHHHHhcCCCcHHHHHHHHH
Q 001381 665 ADKQKI----VAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLP-EKTKRSLLDTLNENLRHPNSQIQNAAVK 739 (1089)
Q Consensus 665 ~~~~~~----i~~i~~~~~~~~l~r~~~gelir~a~~~lI~~ls~~~lp~~-~~~~~~~~~~L~~~L~~~~~~V~~aAa~ 739 (1089)
++.+++ +..++.-+. .|+.. ...+.|.-+.....+++. +|.. ..-...+....-.++.+.+.-||..|.+
T Consensus 334 ~qm~e~~~~~~~~Lv~ll~-ERl~D--~~py~RtKalqv~~kifd--l~sk~~~~r~ev~~lv~r~lqDrss~VRrnaik 408 (1128)
T COG5098 334 GQMVEHYKQKLNDLVGLLV-ERLSD--TYPYTRTKALQVLEKIFD--LNSKTVGRRHEVIRLVGRRLQDRSSVVRRNAIK 408 (1128)
T ss_pred hhhHhhHHHHHHHHHHHHH-HHhhc--cchHHHHHHHHHHHHHHh--CcccccchHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 333332 222222221 22211 123455555555444442 1111 1122345555556666666666666655
Q ss_pred HHHHHHH
Q 001381 740 ALKPFVQ 746 (1089)
Q Consensus 740 Al~~l~~ 746 (1089)
-++.+..
T Consensus 409 l~SkLL~ 415 (1128)
T COG5098 409 LCSKLLM 415 (1128)
T ss_pred HHHHHHh
Confidence 5544433
No 178
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=25.74 E-value=1.8e+02 Score=27.35 Aligned_cols=59 Identities=20% Similarity=0.236 Sum_probs=44.5
Q ss_pred CCChhHHHHHHHHHHHHHhhhCc---chhhhHHHHHHhhcCCC-CCCcchHHHHHHHHHHHhc
Q 001381 395 DTDTVVRWSAAKGIGRITSCLTS---SLSEEVFSSVLELFSPG-EGDGSWHGGCLALAELARR 453 (1089)
Q Consensus 395 d~dt~vR~saAK~l~rI~~~L~~---~~a~~vi~~il~~l~~~-~~~~~wHg~~LaLael~~~ 453 (1089)
+++-.+|--||+-++.|+.+-+. .+...|+..+...|.+. .+..+.=|+..+|++|+..
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG~~ 79 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALGPE 79 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 44568999999999999999774 35667888888877543 3444556899999888654
No 179
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.49 E-value=8.2e+02 Score=31.89 Aligned_cols=185 Identities=15% Similarity=0.173 Sum_probs=100.0
Q ss_pred hhhHHHHHHHhC-CCChhhhhhHHHHhhccchHhhh----hhHHHHHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHh
Q 001381 758 GGISLKYMEQLT-DPNPAIRRGSALALGVLPYELLA----NSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCE 832 (1089)
Q Consensus 758 ~~~v~~~~~~L~-s~~~~~r~G~a~aLG~lp~~~~~----~~~~~i~~~L~~~~~~~~~~~~~d~e~R~~al~sL~~i~~ 832 (1089)
++.|+++++.+. +.-..-||.++++|-++.+..-- .-+..++..|-. +.+|+|.-..++.-+.-++.
T Consensus 21 aETI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~--------D~~D~E~ik~~LdTl~il~~ 92 (970)
T KOG0946|consen 21 AETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQR--------DYMDPEIIKYALDTLLILTS 92 (970)
T ss_pred HhHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhh--------ccCCHHHHHHHHHHHHHHHh
Confidence 788888888886 55567799999999888644311 112334444411 57899999999998877664
Q ss_pred hhccccc-cc-cccCCcchhhhhhh--hHHHHHHHHHHhcccCCCCCCCCcchHHHHHHHHHHHHHHHHhhccCCCCCCC
Q 001381 833 TLTQSQE-NS-LIHSGEDEISLFHL--IKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEICTYILCKRDFVPSPE 908 (1089)
Q Consensus 833 ~~g~~~~-~~-~~~~~~~~~~~~~~--~~~~i~~~Ll~~L~DYT~D~RGDVGSwVR~aa~~~l~~l~~ll~~~~~~~~~~ 908 (1089)
+ +..+. .+ +--+.+.+.-+.+. .....+.+|+..++.|.. .||..|++.+.+++ ..+.
T Consensus 93 ~-dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF--------~VR~~aIqLlsall---s~r~------ 154 (970)
T KOG0946|consen 93 H-DDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDF--------HVRLYAIQLLSALL---SCRP------ 154 (970)
T ss_pred c-CcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhch--------hhhhHHHHHHHHHH---hcCC------
Confidence 3 21000 00 00011111111000 112356788888877733 49999999998774 2110
Q ss_pred CCccccccCCCCccccccccCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhccCccCC-cc----chHHHhhhcC
Q 001381 909 KPQEVKSELPGNVTAEKTLFDANLATNLVAGIVKQAVEKMDKLREAAAKVLRRILYNKTIFVP-IP----HREKLEEIVP 983 (1089)
Q Consensus 909 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~llrq~~EkiD~vR~~A~~~L~~l~~~~~~~~~-~~----~~~~L~~~f~ 983 (1089)
+ -....-+..|..+.++| .+++ .-..-||-.|.-.|+.+... ++.+. +- -|+.|+.|..
T Consensus 155 ----------~-e~q~~ll~~P~gIS~lm-dlL~---DsrE~IRNe~iLlL~eL~k~-n~~IQKlVAFENaFerLfsIIe 218 (970)
T KOG0946|consen 155 ----------T-ELQDALLVSPMGISKLM-DLLR---DSREPIRNEAILLLSELVKD-NSSIQKLVAFENAFERLFSIIE 218 (970)
T ss_pred ----------H-HHHHHHHHCchhHHHHH-HHHh---hhhhhhchhHHHHHHHHHcc-CchHHHHHHHHHHHHHHHHHHH
Confidence 0 00111122333344433 2344 44445688888888877543 24443 11 1445666554
Q ss_pred C
Q 001381 984 N 984 (1089)
Q Consensus 984 ~ 984 (1089)
.
T Consensus 219 e 219 (970)
T KOG0946|consen 219 E 219 (970)
T ss_pred h
Confidence 3
No 180
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=25.42 E-value=56 Score=37.19 Aligned_cols=67 Identities=18% Similarity=0.111 Sum_probs=37.6
Q ss_pred HHHHHHHHhCccCCCCHH-----HHHHHHHHHHHHHccCchh---hHHHHHHHhccccCC--CChhhHHHHHHHHHH
Q 001381 585 YPFVDELLYNKICHWDKV-----LRELAAEALSALVKYDPEY---FANFILEKLTPFTLS--TDLCTRHGATLAAGE 651 (1089)
Q Consensus 585 ~~li~~Ll~~~l~h~D~~-----iR~laa~aL~~L~~~~~~~---~~~~vlp~Ll~~l~~--~d~~~RHG~lLalae 651 (1089)
+.++-.|+..++++-+.. +|..||.-++-.++.-|.. +...+..++++...+ ....+..|++-+++-
T Consensus 280 PSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~k~~sT~YGalkgls~ 356 (450)
T COG5095 280 PSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDREKTESTQYGALKGLSI 356 (450)
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 344445555677755444 9999999999888765532 223344444432221 112444577666544
No 181
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=24.86 E-value=1.1e+02 Score=23.67 Aligned_cols=29 Identities=28% Similarity=0.289 Sum_probs=26.4
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHHHh
Q 001381 385 IIEILLSGLRDTDTVVRWSAAKGIGRITS 413 (1089)
Q Consensus 385 iI~~ll~~L~d~dt~vR~saAK~l~rI~~ 413 (1089)
+|+.|+.-|.+.+..||-.++-+|+.|+.
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 68889999999999999999999998863
No 182
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=24.49 E-value=6.4e+02 Score=24.27 Aligned_cols=61 Identities=16% Similarity=0.156 Sum_probs=44.6
Q ss_pred CCCCHHHHHHHHHHHHHHHhhhccccccccccCCcchhhhhhhhHHHHHHHHHHhcccCCCCCCCCcchHHHHHHHHHHH
Q 001381 813 EDRDTEARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLE 892 (1089)
Q Consensus 813 ~~~d~e~R~~al~sL~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~L~DYT~D~RGDVGSwVR~aa~~~l~ 892 (1089)
.+.....|+.+++||..++...|. . ......+|..+|..+++.- -.|+.|+++..
T Consensus 25 ~~~~~~ek~~~l~si~~lI~~~~~--------------~-i~~~~pQI~a~L~sal~~~----------~l~~~al~~W~ 79 (107)
T PF08064_consen 25 GKKPIPEKKRALRSIEELIKLGGS--------------H-ISSARPQIMACLQSALEIP----------ELREEALSCWN 79 (107)
T ss_pred cCCCHHHHHHHHHHHHHHHHHhHH--------------H-HHHHHHHHHHHHHHHhCCh----------hhHHHHHHHHH
Confidence 457789999999999999873321 1 1245678889998888653 27899999988
Q ss_pred HHHHHh
Q 001381 893 ICTYIL 898 (1089)
Q Consensus 893 ~l~~ll 898 (1089)
.++..+
T Consensus 80 ~fi~~L 85 (107)
T PF08064_consen 80 CFIKTL 85 (107)
T ss_pred HHHHHC
Confidence 776333
No 183
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=23.93 E-value=1.3e+03 Score=27.82 Aligned_cols=66 Identities=20% Similarity=0.188 Sum_probs=44.0
Q ss_pred HHHHHHhCccCCCCHHHHHHHHHHHHHHHccCchhhHHHHH------HHhccccCCCChhhHHHHHHHHHHHHH
Q 001381 587 FVDELLYNKICHWDKVLRELAAEALSALVKYDPEYFANFIL------EKLTPFTLSTDLCTRHGATLAAGEVVL 654 (1089)
Q Consensus 587 li~~Ll~~~l~h~D~~iR~laa~aL~~L~~~~~~~~~~~vl------p~Ll~~l~~~d~~~RHG~lLalaevl~ 654 (1089)
++.-|+.-.=.+.|+.+=..|+.=+|+.++.+|+--. ++ ..+.+.+...|.++|.-+++|+-.++-
T Consensus 367 llkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~--vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 367 LLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKA--VVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred HHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhH--HHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 4444443111266888888888889999988886221 22 223455677888999989998877763
No 184
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=23.26 E-value=1.2e+03 Score=26.96 Aligned_cols=143 Identities=15% Similarity=0.299 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHHHhcChhhhhhhhHHHHH----hhhhhhccCcCCCchhHHHHHHHHHHHhhhcccCCCCcccccccc
Q 001381 259 FRLLGVVEALAAIFKAGGRKVLLDVIPVVWN----DASTMLKSGSAARSPLLRKYLMKLTQRLGLTCLPRCTSAWRYVIR 334 (1089)
Q Consensus 259 ~~~~G~L~~l~~ilk~~~~~~l~~~~~~i~~----~~~~l~~~~~~~~~~l~rKl~~Kl~~rlal~~L~pr~~~wrY~rg 334 (1089)
.+-..+|..++.+.+.-.. .+.++++.|++ ....+-..+ -.+-+-.|+-.-|+++.+-..+-+
T Consensus 87 ~r~~evL~l~~~ii~kl~~-~~~~~v~~I~~~vf~~Tl~MI~~d-~~~yPe~r~~ff~LL~~i~~~~f~----------- 153 (319)
T PF08767_consen 87 AREPEVLSLMATIINKLGE-LIQPQVPQILEAVFECTLPMINKD-FEEYPEHRVNFFKLLRAINEHCFP----------- 153 (319)
T ss_dssp GS-HHHHHHHHHHHHHHGG-GCCCCHHHHHHHHHHHHHHHHSST-SSSSHHHHHHHHHHHHHHHHHHTH-----------
T ss_pred ccChhHHHHHHHHHHHHHH-hhhhhHHHHHHHHHHHHHHHHHhh-hhhChHHHHHHHHHHHHHHHHhHH-----------
Confidence 3445777777777765432 33455555544 222222221 112467888888998887755432
Q ss_pred ccccccccccccccccccccCccccccccccccCCCCCCCCCCchHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhh
Q 001381 335 TSSLGENMSSRAAFREIDQCDHSVVDSLKSEQNRNCPEDEGMDVPDILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSC 414 (1089)
Q Consensus 335 ~rsL~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~e~vE~iI~~ll~~L~d~dt~vR~saAK~l~rI~~~ 414 (1089)
.+. ++ -|+....+|+.++-+++|..+.|--.+-+.+..+.+.
T Consensus 154 --~l~-~l-----------------------------------p~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~ 195 (319)
T PF08767_consen 154 --ALL-QL-----------------------------------PPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNN 195 (319)
T ss_dssp --HHH-HS------------------------------------HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHH
T ss_pred --HHH-cC-----------------------------------CHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence 111 10 0477899999999999999999999999999999988
Q ss_pred hCc---chh--------hhHHHHHHhhcCCCCCCcchHHHHHHHHHHHh
Q 001381 415 LTS---SLS--------EEVFSSVLELFSPGEGDGSWHGGCLALAELAR 452 (1089)
Q Consensus 415 L~~---~~a--------~~vi~~il~~l~~~~~~~~wHg~~LaLael~~ 452 (1089)
... +.+ -+++..++..+++..-...+.-.|..|+.|.+
T Consensus 196 ~~~~~~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf~ 244 (319)
T PF08767_consen 196 VSKTNPEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLFR 244 (319)
T ss_dssp HHH-SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHH
Confidence 766 322 23666777766554444445556777777654
No 185
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=22.94 E-value=1.2e+03 Score=26.87 Aligned_cols=69 Identities=12% Similarity=-0.012 Sum_probs=44.6
Q ss_pred HHHHHHHhCccCCCCHHHHHHHHHHHHHHHccCchhhHHHHHHHhccccCCCChhhHHHHHHHHHHHHH
Q 001381 586 PFVDELLYNKICHWDKVLRELAAEALSALVKYDPEYFANFILEKLTPFTLSTDLCTRHGATLAAGEVVL 654 (1089)
Q Consensus 586 ~li~~Ll~~~l~h~D~~iR~laa~aL~~L~~~~~~~~~~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~ 654 (1089)
.+++.|....-..-++........+|+.=+......+.+.++..+.+++.+....+|++.+.++++++.
T Consensus 22 ~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~ 90 (339)
T PF12074_consen 22 KIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALW 90 (339)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHh
Confidence 344444432222445555555555665544433334456677788888888888899999999999987
No 186
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=22.15 E-value=1.3e+03 Score=27.14 Aligned_cols=291 Identities=17% Similarity=0.209 Sum_probs=148.3
Q ss_pred HHHHHHHHHHHhhhcCCCCchh-----hHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCcc---hh-hhhHH
Q 001381 692 MRSAVSRFIECISLSFVSLPEK-----TKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSG---VV-GGISL 762 (1089)
Q Consensus 692 ir~a~~~lI~~ls~~~lp~~~~-----~~~~~~~~L~~~L~~~~~~V~~aAa~Al~~l~~~y~~~~~~~---~~-~~~v~ 762 (1089)
-.+|+..+=+.++..+-|..+. .+++|.+++++ +.....+-.|+=|+..+..- ...+ .+ ...++
T Consensus 88 q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~---~q~~mlqfEAaWalTNiaSG----tt~QTkvVvd~~AVP 160 (526)
T COG5064 88 QLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDE---IQRDMLQFEAAWALTNIASG----TTQQTKVVVDAGAVP 160 (526)
T ss_pred HHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHh---cchhHHHHHHHHHHhhhccC----cccceEEEEeCCchH
Confidence 3456666666677654333322 56788887764 34455666777776544321 1111 11 56789
Q ss_pred HHHHHhCCCChhhhhhHHHHhhccc--hHhhh------hhHHHHHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHhhh
Q 001381 763 KYMEQLTDPNPAIRRGSALALGVLP--YELLA------NSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETL 834 (1089)
Q Consensus 763 ~~~~~L~s~~~~~r~G~a~aLG~lp--~~~~~------~~~~~i~~~L~~~~~~~~~~~~~d~e~R~~al~sL~~i~~~~ 834 (1089)
.|++.|.+.+..+|.-+.-|||.+. ..... +.++.++..|.. ...+...-+|+-.-|+.+|.
T Consensus 161 lfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~s--------s~~~ismlRn~TWtLSNlcR-- 230 (526)
T COG5064 161 LFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLS--------SAIHISMLRNATWTLSNLCR-- 230 (526)
T ss_pred HHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHh--------ccchHHHHHHhHHHHHHhhC--
Confidence 9999999889999999999999884 22222 223344433321 34566777888888888875
Q ss_pred ccccccccccCCcchhhhhhhhHHHHHHHHHHhc--------------ccCCCCCCCCcchHHHHHHHHHH------HHH
Q 001381 835 TQSQENSLIHSGEDEISLFHLIKNEVMTSLFKAL--------------DDYSVDNRGDVGSWVREAAVDGL------EIC 894 (1089)
Q Consensus 835 g~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~L--------------~DYT~D~RGDVGSwVR~aa~~~l------~~l 894 (1089)
|-++.|+- ....+.+++|.+.+ --|-.| |+ ..+++++ ..+
T Consensus 231 GknP~P~w------------~~isqalpiL~KLiys~D~evlvDA~WAiSYlsD-----g~---~E~i~avld~g~~~RL 290 (526)
T COG5064 231 GKNPPPDW------------SNISQALPILAKLIYSRDPEVLVDACWAISYLSD-----GP---NEKIQAVLDVGIPGRL 290 (526)
T ss_pred CCCCCCch------------HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcc-----Cc---HHHHHHHHhcCCcHHH
Confidence 54433321 22233333333322 112222 10 1111111 112
Q ss_pred HHHhhccCCCCCCCCCccccccCCCCccccccccCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhccCccCCccc
Q 001381 895 TYILCKRDFVPSPEKPQEVKSELPGNVTAEKTLFDANLATNLVAGIVKQAVEKMDKLREAAAKVLRRILYNKTIFVPIPH 974 (1089)
Q Consensus 895 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~llrq~~EkiD~vR~~A~~~L~~l~~~~~~~~~~~~ 974 (1089)
+.+|.+-+...-+.+.-.+++..+|+.....-+++-. .-+.+.. +..-|=+++|.+|+.++..+-.. .
T Consensus 291 vElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G-~L~a~~~---lLs~~ke~irKEaCWTiSNITAG--------n 358 (526)
T COG5064 291 VELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCG-ALKAFRS---LLSSPKENIRKEACWTISNITAG--------N 358 (526)
T ss_pred HHHhcCccccccCHHHHhhcCeeecCccceehheecc-cHHHHHH---HhcChhhhhhhhhheeecccccC--------C
Confidence 2233321110000001112333333322222222211 1122222 24456679999999988876432 2
Q ss_pred hHHHhhhcCCCcccCcCCCCChhhHHhhhcChhhh---HHHHHhhhhcccccCc-hhhH-----HHHHHHHHHHHH
Q 001381 975 REKLEEIVPNEADLNWGVPAFSYPRFVHLLRFSCY---SRVLLSGLVISIGGLQ-ESLR-----KASISALLEYLQ 1041 (1089)
Q Consensus 975 ~~~L~~~f~~~~~~~w~~~~~~f~~~~~lL~~~~y---~~~~l~Glv~SaG~~t-eslv-----~~S~~aL~~y~~ 1041 (1089)
-++++.+...+ ..|-++.+|....| .++-|.=.=.+.||.. -+.+ +..+++|.+|+.
T Consensus 359 teqiqavid~n----------liPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~ 424 (526)
T COG5064 359 TEQIQAVIDAN----------LIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLD 424 (526)
T ss_pred HHHHHHHHhcc----------cchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHh
Confidence 45666665332 36778888865544 3456665556667764 3333 345677778876
No 187
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=21.60 E-value=5.2e+02 Score=34.32 Aligned_cols=69 Identities=17% Similarity=0.315 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCcchhhhhHHHHHHHhCCCChhhhhhHHHHhhcc
Q 001381 714 TKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLTDPNPAIRRGSALALGVL 786 (1089)
Q Consensus 714 ~~~~~~~~L~~~L~~~~~~V~~aAa~Al~~l~~~y~~~~~~~~~~~~v~~~~~~L~s~~~~~r~G~a~aLG~l 786 (1089)
+.+.|+..|-.+|+++.+-||..+---+..|.+.=|.+-. ..++-+|+-.+-+.++..|+-+-+.+|.+
T Consensus 1003 m~d~YiP~I~~~L~Dp~~iVRrqt~ilL~rLLq~~~vKw~----G~Lf~Rf~l~l~D~~edIr~~a~f~~~~v 1071 (1529)
T KOG0413|consen 1003 MTDRYIPMIAASLCDPSVIVRRQTIILLARLLQFGIVKWN----GELFIRFMLALLDANEDIRNDAKFYISEV 1071 (1529)
T ss_pred HHHHhhHHHHHHhcCchHHHHHHHHHHHHHHHhhhhhhcc----hhhHHHHHHHHcccCHHHHHHHHHHHHHH
Confidence 5678888899999999999998777666666553222111 34555555555566777777666666655
No 188
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.58 E-value=7.9e+02 Score=29.42 Aligned_cols=128 Identities=20% Similarity=0.284 Sum_probs=0.0
Q ss_pred HHHHHhCccCCCCHHHHHHHHHHHHHHHccCchhhH---HHHHHHhccccCCCChhhHHHHHHHHHHHHHHHhcccccCC
Q 001381 588 VDELLYNKICHWDKVLRELAAEALSALVKYDPEYFA---NFILEKLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALP 664 (1089)
Q Consensus 588 i~~Ll~~~l~h~D~~iR~laa~aL~~L~~~~~~~~~---~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~l~~~~~~~~ 664 (1089)
+++|+. .+.|++..+|+-|-..|..+.+..|.... ...++.+.+...+.+..+|-+.+..+-.++....
T Consensus 60 lkeLl~-qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~------- 131 (393)
T KOG2149|consen 60 LKELLS-QLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPAC------- 131 (393)
T ss_pred HHHHHh-hhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcc-------
Q ss_pred hhHHHHHHhhhHHHHhhhhccCcchHHHHHHHHHHHHHhhhcCCCCc-hhhHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 001381 665 ADKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLP-EKTKRSLLDTLNENLRHPNSQIQNAAVKALKP 743 (1089)
Q Consensus 665 ~~~~~~i~~i~~~~~~~~l~r~~~gelir~a~~~lI~~ls~~~lp~~-~~~~~~~~~~L~~~L~~~~~~V~~aAa~Al~~ 743 (1089)
|.. ..+..-+..-+.-++.|..++||..+..-+.-
T Consensus 132 --------------------------------------------~e~~sp~~~l~~~yi~~AMThit~~i~~dslkfL~~ 167 (393)
T KOG2149|consen 132 --------------------------------------------KEDQSPMVSLLMPYISSAMTHITPEIQEDSLKFLSL 167 (393)
T ss_pred --------------------------------------------hhhhcchHHHHHHHHHHHHhhccHHHHHhhHHHHHH
Q ss_pred HHHHhhhccCcchhhhhHHHHHHHh
Q 001381 744 FVQTYMVAADSGVVGGISLKYMEQL 768 (1089)
Q Consensus 744 l~~~y~~~~~~~~~~~~v~~~~~~L 768 (1089)
+...|.......... +...|.+.+
T Consensus 168 Ll~~~~p~~~~~~~~-il~n~~d~i 191 (393)
T KOG2149|consen 168 LLERYPDTFSRYASK-ILENFKDVI 191 (393)
T ss_pred HHHHcChHHHHHHHH-HHHHHHHHH
No 189
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.50 E-value=1e+03 Score=34.01 Aligned_cols=150 Identities=13% Similarity=0.075 Sum_probs=79.2
Q ss_pred HHHHHHhCccC-CCCHHHHHHHHHHHHHHHccCchhhHHHHHHHh---ccccCCCChhhHHHHHHHHHHHHHHHhccccc
Q 001381 587 FVDELLYNKIC-HWDKVLRELAAEALSALVKYDPEYFANFILEKL---TPFTLSTDLCTRHGATLAAGEVVLALCKYDYA 662 (1089)
Q Consensus 587 li~~Ll~~~l~-h~D~~iR~laa~aL~~L~~~~~~~~~~~vlp~L---l~~l~~~d~~~RHG~lLalaevl~~l~~~~~~ 662 (1089)
....|.. +++ -.++.+|+|.+.|++++...--.+.....+-.+ ++.-...+...+-|+.-++++....+.....
T Consensus 52 ~~~~l~s-~~~~~~~~p~rkL~s~~i~rl~~~gd~f~~~~~l~~c~d~l~d~~~~~~q~k~~a~~~l~~~y~~~g~~~~- 129 (2067)
T KOG1822|consen 52 LEQQLIS-RLTNGAGPPTRKLISVAIARLISNGDSFSLYSRLNSCNDFLSDGSPSDPQRKLAALSCLGSLYEHYGRMIG- 129 (2067)
T ss_pred HHHHHHH-HHccCCCchhHHHHHHHHHHHHhccchhhHHHHHHHhhhhhhcCCCccHHHHHhhccchHHHHHHhhHhhc-
Confidence 4555554 344 567899999999999998762222222222222 2222335667777888888888877653211
Q ss_pred CChhHHHHHHhhhHHHHhhhhccCcchHHHHHHHHHHHHH-hhhcCCCC-chhhHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 001381 663 LPADKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIEC-ISLSFVSL-PEKTKRSLLDTLNENLRHPNSQIQNAAVKA 740 (1089)
Q Consensus 663 ~~~~~~~~i~~i~~~~~~~~l~r~~~gelir~a~~~lI~~-ls~~~lp~-~~~~~~~~~~~L~~~L~~~~~~V~~aAa~A 740 (1089)
...+...+++.++.+.. -.+.+.-+.....+ +....... .......+......++-+.+-.|+.+|+.+
T Consensus 130 ---~~~edt~~if~~~~k~n------~s~~~~~i~~~l~~~~~~~g~~s~~~~~~k~i~l~~k~~lld~s~~v~iaa~rc 200 (2067)
T KOG1822|consen 130 ---RGLEDTVQIFTKLVKTN------ESFVRQEIMITLHNALKGMGGTSAATATHKAIRLIAKNSLLDRSFNVKIAAARC 200 (2067)
T ss_pred ---chHHHHHHHHHHHHhhH------HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhhhhhhhhHHHHHHhHHH
Confidence 11233344555544321 11222222222221 11111000 112233444456667777777899999999
Q ss_pred HHHHHHH
Q 001381 741 LKPFVQT 747 (1089)
Q Consensus 741 l~~l~~~ 747 (1089)
+.+++..
T Consensus 201 ~~a~s~~ 207 (2067)
T KOG1822|consen 201 LKAFSNL 207 (2067)
T ss_pred HHHHHhh
Confidence 8877653
No 190
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=21.45 E-value=4.7e+02 Score=33.39 Aligned_cols=76 Identities=16% Similarity=0.123 Sum_probs=44.9
Q ss_pred cchHHHHHHHHhCccCCCCHHHHHHHHHHHHHHHccCc-hhhHHHHHHHhccccCCCChhhHHHHHHHHHHHHHHHhc
Q 001381 582 GYLYPFVDELLYNKICHWDKVLRELAAEALSALVKYDP-EYFANFILEKLTPFTLSTDLCTRHGATLAAGEVVLALCK 658 (1089)
Q Consensus 582 ~Y~~~li~~Ll~~~l~h~D~~iR~laa~aL~~L~~~~~-~~~~~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~l~~ 658 (1089)
+|-..++++|++ .+...|..+|-+--+-+-+....-+ +-+-+.++|.+..++.+.+...|.-.+-+++.++..|.+
T Consensus 326 eyq~~i~p~l~k-LF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~ 402 (690)
T KOG1243|consen 326 EYQVRIIPVLLK-LFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSK 402 (690)
T ss_pred ccccchhhhHHH-HhcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhch
Confidence 455566666664 4556677777666555555544332 333456677776666666666666666666666655543
No 191
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=20.68 E-value=7.2e+02 Score=23.43 Aligned_cols=71 Identities=18% Similarity=0.212 Sum_probs=48.1
Q ss_pred HHHHHHHHhhhcC-CchhhHHHHHHHHHhcCCC-hHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHhcC
Q 001381 201 RILGFCKDYLSNA-GPMRTIAGLLLAKLLTRPD-MPTAFASFVEWTHEVLSSVTDDVMNHFRLLGVVEALAAIFKAGG 276 (1089)
Q Consensus 201 rIl~l~~~yL~~~-~k~r~~Aa~LLsrl~tR~D-~~~~l~~f~~w~~~~l~~~~~~~~~~~~~~G~L~~l~~ilk~~~ 276 (1089)
..++.+..+|.+| -..|--+=.+|.+++.+++ .....+..+.-..+.+.... +|........|+.+.-.-+
T Consensus 3 ~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~D-----syVYL~aI~~L~~La~~~p 75 (92)
T PF10363_consen 3 ETLQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDED-----SYVYLNAIKGLAALADRHP 75 (92)
T ss_pred HHHHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCC-----chHHHHHHHHHHHHHHHCh
Confidence 5678888999888 5788888888999999888 43336666666666665331 3544466666666654333
No 192
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=20.13 E-value=8.7e+02 Score=31.13 Aligned_cols=73 Identities=12% Similarity=0.218 Sum_probs=53.8
Q ss_pred HHHHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHhhhccccccccccCCcchhhhhhhhHHHHHHHHHHhcccCCCCC
Q 001381 796 RDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDN 875 (1089)
Q Consensus 796 ~~i~~~L~~~~~~~~~~~~~d~e~R~~al~sL~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~L~DYT~D~ 875 (1089)
..++..|+... ...|...|.-.++-+-..+..+.- +...++|+..+..|+.|=.
T Consensus 329 ~~i~p~l~kLF------~~~Dr~iR~~LL~~i~~~i~~Lt~-----------------~~~~d~I~phv~~G~~DTn--- 382 (690)
T KOG1243|consen 329 VRIIPVLLKLF------KSPDRQIRLLLLQYIEKYIDHLTK-----------------QILNDQIFPHVALGFLDTN--- 382 (690)
T ss_pred cchhhhHHHHh------cCcchHHHHHHHHhHHHHhhhcCH-----------------HhhcchhHHHHHhhcccCC---
Confidence 45666776665 356889999999988876654321 2345789999999998843
Q ss_pred CCCcchHHHHHHHHHHHHHHHHhh
Q 001381 876 RGDVGSWVREAAVDGLEICTYILC 899 (1089)
Q Consensus 876 RGDVGSwVR~aa~~~l~~l~~ll~ 899 (1089)
--+|+.+++.+..+...|.
T Consensus 383 -----~~Lre~Tlksm~~La~kL~ 401 (690)
T KOG1243|consen 383 -----ATLREQTLKSMAVLAPKLS 401 (690)
T ss_pred -----HHHHHHHHHHHHHHHhhhc
Confidence 3499999999998876664
Done!