Query 001381
Match_columns 1089
No_of_seqs 170 out of 393
Neff 6.5
Searched_HMMs 29240
Date Tue Mar 26 01:10:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001381.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001381hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1u6g_C TIP120 protein, CAND1; 99.8 1E-14 3.5E-19 191.6 52.6 651 156-965 19-722 (1230)
2 1b3u_A Protein (protein phosph 99.8 1.7E-15 5.9E-20 181.3 41.3 452 385-962 127-585 (588)
3 1b3u_A Protein (protein phosph 99.7 2.4E-15 8.3E-20 180.1 34.8 456 386-965 12-471 (588)
4 4fdd_A Transportin-1; heat rep 99.7 8.7E-14 3E-18 176.0 44.6 484 380-965 86-659 (852)
5 2bpt_A Importin beta-1 subunit 99.7 5.1E-13 1.8E-17 167.6 47.2 487 380-965 91-628 (861)
6 1u6g_C TIP120 protein, CAND1; 99.7 7.3E-13 2.5E-17 174.0 49.7 515 380-966 82-681 (1230)
7 2bpt_A Importin beta-1 subunit 99.7 6.6E-13 2.2E-17 166.6 46.3 660 156-962 148-855 (861)
8 4fdd_A Transportin-1; heat rep 99.7 1.3E-12 4.5E-17 165.3 48.2 520 380-966 170-786 (852)
9 1qgr_A Protein (importin beta 99.7 1.5E-12 5E-17 163.8 48.3 515 382-965 33-638 (876)
10 1qgr_A Protein (importin beta 99.6 2.5E-11 8.6E-16 152.5 46.7 739 62-964 79-871 (876)
11 1ibr_B P95, importin beta-1 su 99.3 2.2E-09 7.6E-14 124.3 31.0 388 383-869 34-461 (462)
12 1ibr_B P95, importin beta-1 su 99.2 1E-09 3.5E-14 127.1 23.4 316 380-748 86-439 (462)
13 2vgl_B AP-2 complex subunit be 99.1 2.6E-08 9E-13 121.2 32.0 429 380-960 82-528 (591)
14 2vgl_B AP-2 complex subunit be 99.0 3.9E-06 1.3E-10 102.1 42.6 376 379-786 116-530 (591)
15 1wa5_B Importin alpha subunit; 98.9 2.1E-07 7E-12 111.2 26.9 402 382-895 85-509 (530)
16 2jdq_A Importin alpha-1 subuni 98.9 1.5E-07 5E-12 108.8 24.5 350 385-787 21-389 (450)
17 2jdq_A Importin alpha-1 subuni 98.8 8.9E-07 3E-11 102.2 28.9 392 485-965 34-444 (450)
18 2z6g_A B-catenin; FULL-length, 98.7 6.7E-07 2.3E-11 112.5 25.3 459 380-895 146-662 (780)
19 1wa5_C Importin alpha RE-expor 98.7 1.5E-05 5.1E-10 102.3 38.0 482 380-895 81-669 (960)
20 4b8j_A Importin subunit alpha- 98.7 9.5E-07 3.2E-11 105.2 23.9 390 382-831 72-495 (528)
21 2z6h_A Catenin beta-1, beta-ca 98.6 8.7E-06 3E-10 99.8 30.5 506 385-994 15-557 (644)
22 1w63_A Adapter-related protein 98.6 5.7E-06 2E-10 101.3 28.6 434 379-893 102-574 (618)
23 1wa5_B Importin alpha subunit; 98.6 2.5E-06 8.7E-11 101.7 23.7 410 463-965 87-511 (530)
24 4b8j_A Importin subunit alpha- 98.5 1.3E-05 4.4E-10 95.4 26.6 349 519-965 79-444 (528)
25 1jdh_A Beta-catenin; beta-cate 98.5 2.4E-05 8.3E-10 92.3 27.6 453 381-894 14-528 (529)
26 1oyz_A Hypothetical protein YI 98.5 1.3E-05 4.6E-10 87.1 22.7 254 465-828 25-278 (280)
27 1oyz_A Hypothetical protein YI 98.4 6.9E-06 2.3E-10 89.4 18.3 223 588-894 25-248 (280)
28 1w63_A Adapter-related protein 98.4 8.1E-06 2.8E-10 99.9 20.1 293 511-895 104-413 (618)
29 3ul1_B Importin subunit alpha- 98.4 2.4E-05 8.3E-10 93.3 23.2 358 386-832 59-430 (510)
30 3now_A UNC-45 protein, SD10334 98.4 0.00066 2.3E-08 85.0 36.8 393 382-831 328-781 (810)
31 3tpo_A Importin subunit alpha- 98.4 2.9E-05 9.9E-10 92.9 23.9 364 382-832 74-449 (529)
32 2qk2_A LP04448P; mini spindles 98.3 7.2E-06 2.5E-10 87.8 16.2 187 627-836 17-209 (242)
33 2z6g_A B-catenin; FULL-length, 98.3 0.00013 4.5E-09 91.6 29.5 380 385-831 116-517 (780)
34 2x1g_F Cadmus; transport prote 98.3 0.0085 2.9E-07 76.7 46.0 198 582-835 402-618 (971)
35 2z6h_A Catenin beta-1, beta-ca 98.3 0.00013 4.4E-09 89.4 27.6 386 384-832 98-527 (644)
36 1jdh_A Beta-catenin; beta-cate 98.3 7E-05 2.4E-09 88.3 24.1 383 384-830 101-528 (529)
37 2vgl_A Adaptor protein complex 98.2 0.00037 1.3E-08 85.4 28.9 408 379-833 106-551 (621)
38 3ul1_B Importin subunit alpha- 98.2 0.00046 1.6E-08 82.2 29.1 344 519-965 62-431 (510)
39 2qk2_A LP04448P; mini spindles 98.2 3.8E-06 1.3E-10 89.9 9.7 187 388-620 19-209 (242)
40 4hxt_A De novo protein OR329; 98.2 0.00013 4.3E-09 77.0 21.3 230 385-655 3-242 (252)
41 2x19_B Importin-13; nuclear tr 98.2 0.026 8.9E-07 71.9 46.3 271 603-895 423-713 (963)
42 3tpo_A Importin subunit alpha- 98.2 0.00082 2.8E-08 80.3 30.5 350 519-965 81-450 (529)
43 3now_A UNC-45 protein, SD10334 98.1 0.012 4.1E-07 73.7 41.3 453 383-895 289-781 (810)
44 3ltj_A Alpharep-4; protein eng 98.1 5.2E-05 1.8E-09 78.1 16.3 187 582-830 10-196 (201)
45 4ady_A RPN2, 26S proteasome re 98.1 0.00022 7.4E-09 89.9 23.3 309 385-787 393-718 (963)
46 3ltm_A Alpha-REP4; protein eng 98.0 7E-05 2.4E-09 77.8 15.5 183 587-831 20-202 (211)
47 3ltm_A Alpha-REP4; protein eng 98.0 2.9E-05 1E-09 80.7 12.5 183 385-653 20-202 (211)
48 2qk1_A Protein STU2; STU2P, XM 98.0 3.6E-05 1.2E-09 83.5 12.6 205 388-630 20-234 (249)
49 3ltj_A Alpharep-4; protein eng 98.0 9.4E-05 3.2E-09 76.2 15.3 185 382-652 12-196 (201)
50 4db8_A Armadillo-repeat protei 98.0 0.00015 5.1E-09 77.0 16.8 225 386-652 14-249 (252)
51 1wa5_C Importin alpha RE-expor 97.9 0.1 3.5E-06 66.8 44.5 429 398-895 375-842 (960)
52 4ady_A RPN2, 26S proteasome re 97.9 0.00012 4.1E-09 92.2 16.3 206 383-655 471-677 (963)
53 4hxt_A De novo protein OR329; 97.8 0.00021 7.2E-09 75.2 15.1 228 588-833 4-242 (252)
54 2qk1_A Protein STU2; STU2P, XM 97.8 0.00042 1.5E-08 75.0 17.2 192 631-836 22-224 (249)
55 2vgl_A Adaptor protein complex 97.8 0.0011 3.9E-08 81.0 22.9 311 491-895 93-432 (621)
56 2x19_B Importin-13; nuclear tr 97.7 0.061 2.1E-06 68.5 38.6 456 395-895 69-598 (963)
57 2x1g_F Cadmus; transport prote 97.7 0.041 1.4E-06 70.3 35.5 459 395-895 51-614 (971)
58 4hat_C Exportin-1; heat repeat 97.6 0.028 9.6E-07 72.6 32.5 356 485-899 467-878 (1023)
59 4db6_A Armadillo repeat protei 97.5 0.0021 7E-08 66.2 16.3 190 386-616 14-209 (210)
60 3m1i_C Exportin-1; heat repeat 97.5 0.21 7.3E-06 64.5 38.1 421 395-896 60-569 (1049)
61 4db8_A Armadillo-repeat protei 97.4 0.0043 1.5E-07 65.6 18.1 217 485-744 26-249 (252)
62 3m1i_C Exportin-1; heat repeat 97.3 0.034 1.2E-06 71.9 28.4 138 602-747 428-570 (1049)
63 4db6_A Armadillo repeat protei 97.3 0.0023 8E-08 65.8 13.5 181 595-786 20-207 (210)
64 3oc3_A Helicase MOT1, MOT1; re 97.2 0.0046 1.6E-07 72.7 16.5 224 517-787 177-403 (800)
65 1xm9_A Plakophilin 1; armadill 97.1 0.02 6.8E-07 67.2 20.3 344 383-744 43-447 (457)
66 2db0_A 253AA long hypothetical 97.1 0.036 1.2E-06 56.8 18.9 189 559-773 42-231 (253)
67 3oc3_A Helicase MOT1, MOT1; re 97.0 0.0011 3.7E-08 77.9 8.1 153 626-831 175-327 (800)
68 3l6x_A Catenin delta-1; cateni 97.0 0.59 2E-05 56.5 32.3 364 519-966 53-478 (584)
69 1xm9_A Plakophilin 1; armadill 97.0 0.17 6E-06 59.1 27.2 354 520-966 8-451 (457)
70 3ibv_A Exportin-T; karyopherin 96.6 3 0.0001 53.5 38.6 427 397-836 56-632 (980)
71 3gjx_A Exportin-1; transport, 96.4 3.9 0.00013 52.9 38.3 355 485-899 493-904 (1073)
72 3ibv_A Exportin-T; karyopherin 96.4 0.55 1.9E-05 60.4 27.7 470 378-897 187-731 (980)
73 2iw3_A Elongation factor 3A; a 96.0 0.042 1.5E-06 70.0 14.5 222 382-656 93-326 (986)
74 1vsy_5 Proteasome activator BL 95.8 0.069 2.4E-06 68.6 15.4 117 509-657 797-927 (997)
75 3nmz_A APC variant protein; pr 95.8 4.3 0.00015 47.6 29.8 310 397-746 95-450 (458)
76 4hat_C Exportin-1; heat repeat 95.6 8.2 0.00028 49.8 47.3 132 609-747 435-570 (1023)
77 3opb_A SWI5-dependent HO expre 95.5 1.6 5.6E-05 54.1 25.2 198 384-619 498-731 (778)
78 2iw3_A Elongation factor 3A; a 95.4 0.35 1.2E-05 61.8 19.1 229 582-835 91-327 (986)
79 3u0r_A Apoptosis inhibitor 5; 95.2 3.1 0.00011 48.6 24.3 235 574-835 53-301 (507)
80 2of3_A ZYG-9; multifunctional 95.0 0.8 2.7E-05 49.9 18.1 106 716-836 131-240 (266)
81 3l6x_A Catenin delta-1; cateni 94.5 4.2 0.00014 49.2 24.5 341 384-746 90-476 (584)
82 3nmw_A APC variant protein; AR 94.5 0.93 3.2E-05 51.3 17.9 206 383-623 126-341 (354)
83 3nmz_A APC variant protein; pr 94.3 1.4 4.7E-05 51.8 19.1 204 383-621 242-455 (458)
84 3tjz_B Coatomer subunit gamma; 94.1 0.14 4.8E-06 58.2 9.7 212 587-832 105-316 (355)
85 1xqr_A HSPBP1 protein; armadil 93.8 0.13 4.5E-06 56.9 8.6 150 385-543 82-238 (296)
86 1te4_A Conserved protein MTH18 93.6 0.07 2.4E-06 51.1 5.2 85 518-651 46-130 (131)
87 1xqr_A HSPBP1 protein; armadil 93.3 0.46 1.6E-05 52.5 12.1 174 602-787 55-237 (296)
88 2db0_A 253AA long hypothetical 93.2 7.5 0.00026 40.1 19.3 215 383-653 31-245 (253)
89 4ffb_C Protein STU2; tubulin f 93.2 0.64 2.2E-05 50.3 12.8 112 518-656 59-170 (278)
90 1te4_A Conserved protein MTH18 92.8 0.1 3.6E-06 49.8 5.1 85 721-829 46-130 (131)
91 3opb_A SWI5-dependent HO expre 92.7 4.1 0.00014 50.7 20.2 237 587-832 458-728 (778)
92 3tjz_B Coatomer subunit gamma; 91.5 2.8 9.7E-05 47.5 15.7 190 491-744 87-277 (355)
93 3nmw_A APC variant protein; AR 91.3 1.7 5.8E-05 49.2 13.8 182 464-655 128-335 (354)
94 3a6p_A Exportin-5; exportin-5, 91.1 48 0.0017 43.4 30.6 99 759-872 529-638 (1204)
95 2of3_A ZYG-9; multifunctional 91.0 3.1 0.00011 45.3 14.7 134 726-895 96-235 (266)
96 4ffb_C Protein STU2; tubulin f 89.8 13 0.00044 39.8 18.6 186 722-965 14-213 (278)
97 3gjx_A Exportin-1; transport, 88.3 71 0.0024 41.3 36.5 76 395-472 72-159 (1073)
98 3b2a_A TON_1937, putative unch 87.2 8.6 0.00029 41.1 14.1 163 595-777 41-207 (265)
99 3l9t_A Putative uncharacterize 86.5 15 0.0005 39.3 15.6 164 582-782 70-234 (240)
100 3l9t_A Putative uncharacterize 85.5 11 0.00038 40.2 14.0 72 519-624 144-215 (240)
101 3b2a_A TON_1937, putative unch 82.8 35 0.0012 36.5 16.2 185 626-833 34-219 (265)
102 3a6p_A Exportin-5; exportin-5, 77.7 28 0.00094 45.7 16.8 200 727-966 57-278 (1204)
103 3grl_A General vesicular trans 74.1 23 0.00077 43.1 13.2 170 757-965 19-196 (651)
104 1vsy_5 Proteasome activator BL 72.5 4.2 0.00014 52.3 6.8 106 380-490 839-960 (997)
105 4atg_A TAF6; transcription, TF 71.6 17 0.00057 37.7 9.8 128 519-652 16-160 (196)
106 3u0r_A Apoptosis inhibitor 5; 69.9 27 0.00093 40.9 12.1 129 687-836 39-167 (507)
107 3tt9_A Plakophilin-2; cell adh 62.3 92 0.0031 32.8 13.7 66 588-654 10-81 (233)
108 1vsy_4 Proteasome activator BL 62.3 3.1E+02 0.01 34.3 21.3 166 378-549 513-694 (799)
109 3gs3_A Symplekin, LD45768P; he 60.0 1.1E+02 0.0036 33.0 13.8 117 581-702 48-170 (257)
110 1lsh_A Lipovitellin (LV-1N, LV 54.5 1.4E+02 0.0049 38.4 16.2 141 758-962 390-541 (1056)
111 4atg_A TAF6; transcription, TF 53.9 1.8E+02 0.0061 29.9 13.7 149 198-413 12-162 (196)
112 3tt9_A Plakophilin-2; cell adh 53.0 1.5E+02 0.0051 31.2 13.4 103 722-831 13-123 (233)
113 4gmo_A Putative uncharacterize 51.8 2.7E+02 0.0093 33.8 17.4 68 522-620 42-109 (684)
114 1lrv_A LRV, leucine-rich repea 44.8 39 0.0013 36.0 7.3 43 594-650 177-219 (244)
115 3o2t_A Symplekin; heat repeat, 43.9 1.3E+02 0.0045 34.2 11.9 116 582-702 59-180 (386)
116 4gmo_A Putative uncharacterize 37.8 43 0.0015 41.0 7.1 68 382-451 32-104 (684)
117 1ho8_A Vacuolar ATP synthase s 33.8 4.2E+02 0.015 30.9 14.1 240 379-653 160-475 (480)
118 3ebb_A Phospholipase A2-activa 29.7 2.4E+02 0.0083 30.8 10.8 73 381-453 188-264 (304)
119 1upk_A MO25 protein; transfera 28.7 6.1E+02 0.021 28.2 13.7 64 583-647 75-147 (341)
120 1lsh_A Lipovitellin (LV-1N, LV 28.3 1E+03 0.036 30.3 24.5 145 712-891 390-538 (1056)
121 3o2t_A Symplekin; heat repeat, 23.6 8.3E+02 0.028 27.6 18.1 217 194-469 19-270 (386)
122 1vsy_4 Proteasome activator BL 23.2 1.1E+03 0.039 29.1 36.3 235 379-650 126-405 (799)
123 1lrv_A LRV, leucine-rich repea 21.0 1.1E+02 0.0039 32.3 5.9 40 485-537 34-73 (244)
No 1
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.77 E-value=1e-14 Score=191.58 Aligned_cols=651 Identities=12% Similarity=0.100 Sum_probs=385.8
Q ss_pred hhHHHHHHHHHHHHHhhcCCCCCCCCCcccccccCCCCCChhHHHHHHHHHHHhhhcC-CchhhHHHHHHHHHhcCCChH
Q 001381 156 EMEAKCVILLWLSILVLVPFDISSVDTSIANNENLGQNEPAPLVMRILGFCKDYLSNA-GPMRTIAGLLLAKLLTRPDMP 234 (1089)
Q Consensus 156 ~We~~YvlLlWLS~Lvl~PFdL~~id~~~~~~~~~~~~~~~~l~~rIl~l~~~yL~~~-~k~r~~Aa~LLsrl~tR~D~~ 234 (1089)
+...|+.-+--|...+..|+. ..|. .....++.....+|.++ ...|.+|+..|+.+..+-.-
T Consensus 19 d~~~R~~A~~~L~~~l~~~~~--~~~~--------------~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~- 81 (1230)
T 1u6g_C 19 DKDFRFMATNDLMTELQKDSI--KLDD--------------DSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE- 81 (1230)
T ss_dssp SHHHHHHHHHHHHHHTSSSCC--SCCT--------------THHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH-
T ss_pred CHhHHHHHHHHHHHHHccccc--CCCh--------------hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH-
Confidence 346888887777776665533 2232 13346666666677544 67899999999998865322
Q ss_pred HHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHhcChhh-----hhhhhHHHHHhhhh-hhccCcCCCchhHHH
Q 001381 235 TAFASFVEWTHEVLSSVTDDVMNHFRLLGVVEALAAIFKAGGRKV-----LLDVIPVVWNDAST-MLKSGSAARSPLLRK 308 (1089)
Q Consensus 235 ~~l~~f~~w~~~~l~~~~~~~~~~~~~~G~L~~l~~ilk~~~~~~-----l~~~~~~i~~~~~~-l~~~~~~~~~~l~rK 308 (1089)
..++.++....+.+...+.. .+. +....++.+........ ..++.+.++..... +.+++ +.-.|.
T Consensus 82 ~~~~~i~~~Ll~~l~d~~~~----vR~-~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~----~~~~~~ 152 (1230)
T 1u6g_C 82 YQVETIVDTLCTNMLSDKEQ----LRD-ISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQE----DVSVQL 152 (1230)
T ss_dssp HHHHHHHHHHHHHTTCSSSH----HHH-HHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCS----CHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcHH----HHH-HHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCC----chHHHH
Confidence 23566666666666433221 233 55566777766544331 22334444432221 22222 445666
Q ss_pred HHHHHHHHhhhcccCCCCccccccccccccccccccccccccccccCccccccccccccCCCCCCCCCCchHHHHHHHHH
Q 001381 309 YLMKLTQRLGLTCLPRCTSAWRYVIRTSSLGENMSSRAAFREIDQCDHSVVDSLKSEQNRNCPEDEGMDVPDILEEIIEI 388 (1089)
Q Consensus 309 l~~Kl~~rlal~~L~pr~~~wrY~rg~rsL~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~e~vE~iI~~ 388 (1089)
..+.++..+.-.+ .+ .+...++.+++.
T Consensus 153 ~al~~l~~~~~~~---------------------------------------------------~~--~l~~~~~~ll~~ 179 (1230)
T 1u6g_C 153 EALDIMADMLSRQ---------------------------------------------------GG--LLVNFHPSILTC 179 (1230)
T ss_dssp HHHHHHHHHHHHT---------------------------------------------------CS--SCTTTHHHHHHH
T ss_pred HHHHHHHHHHHHh---------------------------------------------------Hh--HHHHHHHHHHHH
Confidence 6666655543110 00 112357899999
Q ss_pred HHhhcCCCChhHHHHHHHHHHHHHhhhCcchhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHHhc-CCCCCCcccchHHH
Q 001381 389 LLSGLRDTDTVVRWSAAKGIGRITSCLTSSLSEEVFSSVLELFSPGEGDGSWHGGCLALAELARR-GLLLPSSLPKVVPV 467 (1089)
Q Consensus 389 ll~~L~d~dt~vR~saAK~l~rI~~~L~~~~a~~vi~~il~~l~~~~~~~~wHg~~LaLael~~~-~ll~p~~l~~il~~ 467 (1089)
|+..|.|.++.||-.|+++++.++...+.++.+.+++.+++.+....+.....++|-+++++++. |-.+.+++++++|.
T Consensus 180 l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ 259 (1230)
T 1u6g_C 180 LLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPL 259 (1230)
T ss_dssp HGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHH
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998888888999998775443334556789999998875 22234578999999
Q ss_pred HHHhhhhhccccccCCChhhhhhhhHHHHHhhhccCccchhHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHhcccCC
Q 001381 468 IVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAAAAAFQENVGRQGN 547 (1089)
Q Consensus 468 i~~~L~f~~r~~~~svG~~VRDAacfi~WslaR~~~~~~l~~~~~~l~~~Ll~~alfD~e~~iRRaAsAAlQE~vGR~g~ 547 (1089)
+.+++..+ -..||+++.-.+-.+++.+. +.+.||+..+...++....+|++. +.. .. .+..++.+.
T Consensus 260 ll~~l~d~--------~~~vR~~a~~~l~~l~~~~~-~~~~~~l~~li~~ll~~l~~d~~~--~~~--~d-~~~~~~~~~ 325 (1230)
T 1u6g_C 260 VVKFCNVD--------DDELREYCIQAFESFVRRCP-KEVYPHVSTIINICLKYLTYDPNY--NYD--DE-DEDENAMDA 325 (1230)
T ss_dssp HHHHHSSC--------CTTTHHHHHHHHHHHHHCTT-CCCHHHHHHHHHHHTTCCCCC----------------------
T ss_pred HHHHhcCC--------CHHHHHHHHHHHHHHHHHCh-HHHHHhHHHHHHHHHHHhCCCCCC--CCc--cc-ccccccccc
Confidence 99888632 25699999998888888765 567899999988887665566654 100 00 000111100
Q ss_pred CCCCc-cceeccccc------chhhhHHHHHHHHHHHHh----hhcchHHHHHHHHhCccCCCCHHHHHHHHHHHHHHHc
Q 001381 548 YPHGI-DIVNTADYF------SLSSRVYSYLHVAVFIAQ----YEGYLYPFVDELLYNKICHWDKVLRELAAEALSALVK 616 (1089)
Q Consensus 548 ~p~GI-~il~~~d~~------~v~~r~~a~~~va~~va~----~~~Y~~~li~~Ll~~~l~h~D~~iR~laa~aL~~L~~ 616 (1089)
. .|- +--...|.| ....|..|...+...+.. +..|.+.+++.|+. .+.+.+..+|..++++++.++.
T Consensus 326 ~-~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~-~l~d~~~~Vr~~a~~~l~~l~~ 403 (1230)
T 1u6g_C 326 D-GGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALIS-RFKEREENVKADVFHAYLSLLK 403 (1230)
T ss_dssp --------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHS-TTSCSSSHHHHHHHHHHHHHHH
T ss_pred c-ccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHH-HcCCCchHHHHHHHHHHHHHHH
Confidence 0 000 000000111 122344443333333332 23566667777765 5677789999999999999886
Q ss_pred cCc------------------h----hhHHHHHHHhccccCCCChhhHHHHHHHHHHHHHHHhcccccCChhHHHHHHhh
Q 001381 617 YDP------------------E----YFANFILEKLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPADKQKIVAGI 674 (1089)
Q Consensus 617 ~~~------------------~----~~~~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~l~~~~~~~~~~~~~~i~~i 674 (1089)
..+ . ...+.++|.+.+.+.+.++.+|++++.++++++..+... . ......+...
T Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~---l-~~~l~~ll~~ 479 (1230)
T 1u6g_C 404 QTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGA---L-TQHIPVLVPG 479 (1230)
T ss_dssp HHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTT---T-GGGHHHHHHH
T ss_pred HhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhh---h-HHHHHHHHHH
Confidence 321 1 122345555556688899999999999999999875321 1 1122333222
Q ss_pred hHHHHhhhhccCcchHHHHHHHHHHHHHhhhcCCCCc-hhhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhc--
Q 001381 675 VPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLP-EKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVA-- 751 (1089)
Q Consensus 675 ~~~~~~~~l~r~~~gelir~a~~~lI~~ls~~~lp~~-~~~~~~~~~~L~~~L~~~~~~V~~aAa~Al~~l~~~y~~~-- 751 (1089)
+....+.. ....-++.+++..+..+....-|-. ...+..+...+..++.+++..|+..|..++..+...+-..
T Consensus 480 l~~~L~d~----~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~ 555 (1230)
T 1u6g_C 480 IIFSLNDK----SSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQ 555 (1230)
T ss_dssp HHHHTTCS----SSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSS
T ss_pred HHHHHcCC----CCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCccc
Confidence 22222111 1123566777777766543221110 1133445555666778888889888888888887654210
Q ss_pred cCc----chhhhhHHHHHHHh--CCCChhhhhhHHHHhhccchHh---hhhhHHHHHHHHhhhccccCCCCCCCHHHHHH
Q 001381 752 ADS----GVVGGISLKYMEQL--TDPNPAIRRGSALALGVLPYEL---LANSWRDVLLKLCSCCLIEENPEDRDTEARVN 822 (1089)
Q Consensus 752 ~~~----~~~~~~v~~~~~~L--~s~~~~~r~G~a~aLG~lp~~~---~~~~~~~i~~~L~~~~~~~~~~~~~d~e~R~~ 822 (1089)
... ...+.+++.+++.+ .+.++..|.+++.++|.+-... +.+.+..++..|...+. ...+|.+
T Consensus 556 ~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~--------~e~~r~~ 627 (1230)
T 1u6g_C 556 PSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLK--------NEITRLT 627 (1230)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTT--------SSSHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhc--------cchhHHH
Confidence 000 11267777888888 5677889999999999885442 33556777777766642 1248999
Q ss_pred HHHHHHHHHhhhccccccccccCCcchhhhhhhhHHHHHHHHHHhcccCCCCCCCCcchHHHHHHHHHHHHHHHHhhccC
Q 001381 823 AVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEICTYILCKRD 902 (1089)
Q Consensus 823 al~sL~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~L~DYT~D~RGDVGSwVR~aa~~~l~~l~~ll~~~~ 902 (1089)
++++++.+....+.. . .......++..|...+.|- -.-+|..+++++..++...
T Consensus 628 ~~~al~~i~~~~~~~-------------~-~~~~~~~i~~~L~~~l~~~--------~~~~r~~a~~al~~l~~~~---- 681 (1230)
T 1u6g_C 628 TVKALTLIAGSPLKI-------------D-LRPVLGEGVPILASFLRKN--------QRALKLGTLSALDILIKNY---- 681 (1230)
T ss_dssp HHHHHHHHTTCSSCC-------------C-CHHHHHHHHHHHHHHTTSC--------CHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHhCcccc-------------c-hHHHHHHHHHHHHHHHHhC--------CHHHHHHHHHHHHHHHhcc----
Confidence 999999887533210 0 1356778888888888652 1349999999998875221
Q ss_pred CCCCCCCCccccccCCCCccccccccCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhc
Q 001381 903 FVPSPEKPQEVKSELPGNVTAEKTLFDANLATNLVAGIVKQAVEKMDKLREAAAKVLRRILYN 965 (1089)
Q Consensus 903 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~llrq~~EkiD~vR~~A~~~L~~l~~~ 965 (1089)
+..++.+.+..++..++....+.=..++..++.+|..++..
T Consensus 682 ----------------------~~~~~~~~v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~~ 722 (1230)
T 1u6g_C 682 ----------------------SDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKV 722 (1230)
T ss_dssp ----------------------CTTCCHHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTS
T ss_pred ----------------------cccCCHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHh
Confidence 11223344444444443332233345677777777777643
No 2
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.76 E-value=1.7e-15 Score=181.33 Aligned_cols=452 Identities=14% Similarity=0.106 Sum_probs=308.8
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHHHhhhCcchhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHHhcCCCCCCcccch
Q 001381 385 IIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSLSEEVFSSVLELFSPGEGDGSWHGGCLALAELARRGLLLPSSLPKV 464 (1089)
Q Consensus 385 iI~~ll~~L~d~dt~vR~saAK~l~rI~~~L~~~~a~~vi~~il~~l~~~~~~~~wHg~~LaLael~~~~ll~p~~l~~i 464 (1089)
+++.+.....+.+..+|-++++.++.+...++....+++++.+...+++. ++.....++-+|+.++...- .+...+.+
T Consensus 127 l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~-~~~VR~~a~~~l~~l~~~~~-~~~~~~~l 204 (588)
T 1b3u_A 127 FVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDD-TPMVRRAAASKLGEFAKVLE-LDNVKSEI 204 (588)
T ss_dssp HHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHHHHHHHHHHHHHTCS-CHHHHHHHHHHHHHHHHTSC-HHHHHHTH
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhc-HHhHHHHH
Confidence 44444444567789999999999999999988777788888888877543 33445678899999887521 11234678
Q ss_pred HHHHHHhhhhhccccccCCChhhhhhhhHHHHHhhhccCccchhHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHhcc
Q 001381 465 VPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAAAAAFQENVGR 544 (1089)
Q Consensus 465 l~~i~~~L~f~~r~~~~svG~~VRDAacfi~WslaR~~~~~~l~~~~~~l~~~Ll~~alfD~e~~iRRaAsAAlQE~vGR 544 (1089)
+|.+...+..+. ..||.+|+..+..++...+++...+ .+..++...+-|+++.+|++|..+|..+...
T Consensus 205 ~~~l~~~~~d~~--------~~vr~~a~~~l~~l~~~~~~~~~~~----~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~ 272 (588)
T 1b3u_A 205 IPMFSNLASDEQ--------DSVRLLAVEACVNIAQLLPQEDLEA----LVMPTLRQAAEDKSWRVRYMVADKFTELQKA 272 (588)
T ss_dssp HHHHHHHHTCSC--------HHHHTTHHHHHHHHHHHSCHHHHHH----HTHHHHHHHHTCSSHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHhcCCc--------HHHHHHHHHHHHHHHHhCCHHHHHH----HHHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Confidence 888877664333 6799999999999998877543322 2233445666899999999999998765322
Q ss_pred cCCCCCCccceecccccchhhhHHHHHHHHHHHHhhhcchHHHHHHHHhCccCCCCHHHHHHHHHHHHHHHccCch----
Q 001381 545 QGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNKICHWDKVLRELAAEALSALVKYDPE---- 620 (1089)
Q Consensus 545 ~g~~p~GI~il~~~d~~~v~~r~~a~~~va~~va~~~~Y~~~li~~Ll~~~l~h~D~~iR~laa~aL~~L~~~~~~---- 620 (1089)
.|. +.+...+++.++. .+.+.|..+|+.|+.+|+.++...+.
T Consensus 273 ~~~---------------------------------~~~~~~l~~~l~~-~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~ 318 (588)
T 1b3u_A 273 VGP---------------------------------EITKTDLVPAFQN-LMKDCEAEVRAAASHKVKEFCENLSADCRE 318 (588)
T ss_dssp HCH---------------------------------HHHHHTHHHHHHH-HHTCSSHHHHHHHHHHHHHHHHTSCTTTHH
T ss_pred hCc---------------------------------ccchhHHHHHHHH-HhCCCcHHHHHHHHHHHHHHHHHhChhhhh
Confidence 221 0012234444443 45588999999999999999986654
Q ss_pred -hhHHHHHHHhccccCCCChhhHHHHHHHHHHHHHHHhcccccCChhHHHHHHhhhHHHHhhhhccCcchHHHHHHHHHH
Q 001381 621 -YFANFILEKLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPADKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRF 699 (1089)
Q Consensus 621 -~~~~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~l~~~~~~~~~~~~~~i~~i~~~~~~~~l~r~~~gelir~a~~~l 699 (1089)
.....++|.+...+.+.++.+|++++.+++++...+.+ +.....+..++..+.+ . ..+-+|.+++..
T Consensus 319 ~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~------~~~~~~l~p~l~~~l~-----d-~~~~Vr~~a~~~ 386 (588)
T 1b3u_A 319 NVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK------DNTIEHLLPLFLAQLK-----D-ECPEVRLNIISN 386 (588)
T ss_dssp HHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH------HHHHHHTHHHHHHHHT-----C-SCHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhH------hHHHHHHHHHHHHHhC-----C-CchHHHHHHHHH
Confidence 24566888888888899999999999999888876542 1112223333333322 1 234577777766
Q ss_pred HHHhhhcCCCCchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCcchhhhhHHHHHHHhCCCChhhhhhH
Q 001381 700 IECISLSFVSLPEKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLTDPNPAIRRGS 779 (1089)
Q Consensus 700 I~~ls~~~lp~~~~~~~~~~~~L~~~L~~~~~~V~~aAa~Al~~l~~~y~~~~~~~~~~~~v~~~~~~L~s~~~~~r~G~ 779 (1089)
+..+... ++. ......+...+...+.+++..+|.++.+++..+...+-.. ...+.+++.+.+.+++.+...|..+
T Consensus 387 l~~l~~~-~~~-~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~Vr~~a 461 (588)
T 1b3u_A 387 LDCVNEV-IGI-RQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE---FFDEKLNSLCMAWLVDHVYAIREAA 461 (588)
T ss_dssp CHHHHHH-SCH-HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG---GCCHHHHHHHHHGGGCSSHHHHHHH
T ss_pred HHHHHHh-cCH-HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH---HHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 6655431 110 1223455556666678899999999999999887754211 1125678888888888889999999
Q ss_pred HHHhhccchHhhhh-hHHHHHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHhhhccccccccccCCcchhhhhhhhHH
Q 001381 780 ALALGVLPYELLAN-SWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKN 858 (1089)
Q Consensus 780 a~aLG~lp~~~~~~-~~~~i~~~L~~~~~~~~~~~~~d~e~R~~al~sL~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 858 (1089)
+.++|.+-...-.. ....++..|.... .+.+...|..++.+++.++..+|. .....
T Consensus 462 ~~~l~~l~~~~~~~~~~~~llp~l~~~~------~~~~~~~R~~a~~~l~~l~~~~~~-----------------~~~~~ 518 (588)
T 1b3u_A 462 TSNLKKLVEKFGKEWAHATIIPKVLAMS------GDPNYLHRMTTLFCINVLSEVCGQ-----------------DITTK 518 (588)
T ss_dssp HHHHHHHHHHHCHHHHHHHTHHHHHHTT------TCSCHHHHHHHHHHHHHHHHHHHH-----------------HHHHH
T ss_pred HHHHHHHHHHhCchhHHHHHHHHHHHHh------hCCCHHHHHHHHHHHHHHHHhcCH-----------------HHHHH
Confidence 99998885443221 2345666665543 345689999999999998876653 13456
Q ss_pred HHHHHHHHhcccCCCCCCCCcchHHHHHHHHHHHHHHHHhhccCCCCCCCCCccccccCCCCccccccccCHHHH-HHHH
Q 001381 859 EVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEICTYILCKRDFVPSPEKPQEVKSELPGNVTAEKTLFDANLA-TNLV 937 (1089)
Q Consensus 859 ~i~~~Ll~~L~DYT~D~RGDVGSwVR~aa~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~ 937 (1089)
.+++.|+..++|-. ..||..+++++..+... +.+... ..++
T Consensus 519 ~~~~~l~~~l~d~~--------~~Vr~~a~~~l~~l~~~------------------------------~~~~~~~~~~~ 560 (588)
T 1b3u_A 519 HMLPTVLRMAGDPV--------ANVRFNVAKSLQKIGPI------------------------------LDNSTLQSEVK 560 (588)
T ss_dssp HTHHHHHHGGGCSC--------HHHHHHHHHHHHHHGGG------------------------------SCHHHHHHHHH
T ss_pred HHHHHHHhhCCCCC--------chHHHHHHHHHHHHHHH------------------------------hchhhhHHHHH
Confidence 78889999987642 57999999999887411 112222 3455
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHH
Q 001381 938 AGIVKQAVEKMDKLREAAAKVLRRI 962 (1089)
Q Consensus 938 ~~llrq~~EkiD~vR~~A~~~L~~l 962 (1089)
..+.+..-++=..||..|..++..+
T Consensus 561 p~l~~l~~d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 561 PILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHh
Confidence 5566666788889999999998765
No 3
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.73 E-value=2.4e-15 Score=180.08 Aligned_cols=456 Identities=17% Similarity=0.157 Sum_probs=302.7
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHHHhhhCcc-hhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHHhcCCCCCCcccch
Q 001381 386 IEILLSGLRDTDTVVRWSAAKGIGRITSCLTSS-LSEEVFSSVLELFSPGEGDGSWHGGCLALAELARRGLLLPSSLPKV 464 (1089)
Q Consensus 386 I~~ll~~L~d~dt~vR~saAK~l~rI~~~L~~~-~a~~vi~~il~~l~~~~~~~~wHg~~LaLael~~~~ll~p~~l~~i 464 (1089)
|+.|+..|.+.|..+|+.|+++++.|...++++ ..+++++.+.+..++ ++.....++-+|+++... +-.+.+.+.+
T Consensus 12 i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~d~--~~~vr~~~~~~L~~~~~~-~~~~~~~~~l 88 (588)
T 1b3u_A 12 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYD--EDEVLLALAEQLGTFTTL-VGGPEYVHCL 88 (588)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTCCC--CHHHHHHHHHHHTTCSGG-GTSGGGGGGG
T ss_pred HHHHHHHhhcccHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHhcCC--cHHHHHHHHHHHHHHHhc-cCcHHHHHHH
Confidence 788999999999999999999999999888764 346788888776521 222222233333333221 0013356778
Q ss_pred HHHHHHhhhhhccccccCCChhhhhhhhHHHHHhhhccCccchhHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHhcc
Q 001381 465 VPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAAAAAFQENVGR 544 (1089)
Q Consensus 465 l~~i~~~L~f~~r~~~~svG~~VRDAacfi~WslaR~~~~~~l~~~~~~l~~~Ll~~alfD~e~~iRRaAsAAlQE~vGR 544 (1089)
+|.+...+..+. ..||++|+-.+=.++..+.++.+.++ +..++...+-+++..+|.+|..++..+...
T Consensus 89 l~~L~~l~~~~~--------~~vR~~a~~~L~~l~~~~~~~~~~~~----l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~ 156 (588)
T 1b3u_A 89 LPPLESLATVEE--------TVVRDKAVESLRAISHEHSPSDLEAH----FVPLVKRLAGGDWFTSRTSACGLFSVCYPR 156 (588)
T ss_dssp HHHHHHHTTSSC--------HHHHHHHHHHHHHHHTTSCHHHHHHT----HHHHHHHHHTCSSHHHHHHHGGGHHHHTTT
T ss_pred HHHHHHHHhCch--------HHHHHHHHHHHHHHHHHCCHHHHHHH----HHHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence 888765443222 67999999999888888776444333 344445555678889999988887665433
Q ss_pred cCCCCCCccceecccccchhhhHHHHHHHHHHHHhhhcchHHHHHHHHhCccCCCCHHHHHHHHHHHHHHHccCch-hhH
Q 001381 545 QGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNKICHWDKVLRELAAEALSALVKYDPE-YFA 623 (1089)
Q Consensus 545 ~g~~p~GI~il~~~d~~~v~~r~~a~~~va~~va~~~~Y~~~li~~Ll~~~l~h~D~~iR~laa~aL~~L~~~~~~-~~~ 623 (1089)
.+. .++..+++.|.. .+.+.|..+|+.|+++|+.++...+. ...
T Consensus 157 ~~~----------------------------------~~~~~l~~~l~~-l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~ 201 (588)
T 1b3u_A 157 VSS----------------------------------AVKAELRQYFRN-LCSDDTPMVRRAAASKLGEFAKVLELDNVK 201 (588)
T ss_dssp SCH----------------------------------HHHHHHHHHHHH-HHTCSCHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred cCH----------------------------------HHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHHHHHhcHHhHH
Confidence 220 012234444433 44588999999999999999987654 345
Q ss_pred HHHHHHhccccCCCChhhHHHHHHHHHHHHHHHhcccccCChhHHHHHHhhhHHHHhhhhccCcchHHHHHHHHHHHHHh
Q 001381 624 NFILEKLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPADKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECI 703 (1089)
Q Consensus 624 ~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~l~~~~~~~~~~~~~~i~~i~~~~~~~~l~r~~~gelir~a~~~lI~~l 703 (1089)
..++|.+...+.+.+..+|.+++.+++.+...+.. +.....+..++..+.+. ...-+|.+++..++.+
T Consensus 202 ~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~------~~~~~~~~~~l~~~~~d------~~~~vR~~a~~~l~~l 269 (588)
T 1b3u_A 202 SEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ------EDLEALVMPTLRQAAED------KSWRVRYMVADKFTEL 269 (588)
T ss_dssp HTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH------HHHHHHTHHHHHHHHTC------SSHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCH------HHHHHHHHHHHHHHccC------CCHHHHHHHHHHHHHH
Confidence 67888888888889999999999999998876532 22223333333333321 2345899999998887
Q ss_pred hhcCCCCchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccC-cchhhhhHHHHHHHhCCCChhhhhhHHHH
Q 001381 704 SLSFVSLPEKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAAD-SGVVGGISLKYMEQLTDPNPAIRRGSALA 782 (1089)
Q Consensus 704 s~~~lp~~~~~~~~~~~~L~~~L~~~~~~V~~aAa~Al~~l~~~y~~~~~-~~~~~~~v~~~~~~L~s~~~~~r~G~a~a 782 (1089)
+... + .......+...+...+.+++.+||.+|+.++..+....-.... ....+.+++.+.+.+++.++..|++++.+
T Consensus 270 ~~~~-~-~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~ 347 (588)
T 1b3u_A 270 QKAV-G-PEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASV 347 (588)
T ss_dssp HHHH-C-HHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTT
T ss_pred HHHh-C-cccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 6421 1 0112344556666677899999999999999988764311000 01235677777777888899999999999
Q ss_pred hhccchHhhhhh-HHHHHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHhhhccccccccccCCcchhhhhhhhHHHHH
Q 001381 783 LGVLPYELLANS-WRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVM 861 (1089)
Q Consensus 783 LG~lp~~~~~~~-~~~i~~~L~~~~~~~~~~~~~d~e~R~~al~sL~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~ 861 (1089)
||.+...+-... ...++..+...+ .+.+.+.|..++.+|+.++..+|.. .....++
T Consensus 348 l~~l~~~~~~~~~~~~l~p~l~~~l------~d~~~~Vr~~a~~~l~~l~~~~~~~-----------------~~~~~~l 404 (588)
T 1b3u_A 348 IMGLSPILGKDNTIEHLLPLFLAQL------KDECPEVRLNIISNLDCVNEVIGIR-----------------QLSQSLL 404 (588)
T ss_dssp GGGGHHHHCHHHHHHHTHHHHHHHH------TCSCHHHHHHHHTTCHHHHHHSCHH-----------------HHHHHHH
T ss_pred HHHHHHHhhHhHHHHHHHHHHHHHh------CCCchHHHHHHHHHHHHHHHhcCHH-----------------HHHHHHH
Confidence 999865442221 233445555544 2346899999999999988765431 2345677
Q ss_pred HHHHHhcccCCCCCCCCcchHHHHHHHHHHHHHHHHhhccCCCCCCCCCccccccCCCCccccccccCHHHHHHHHHHHH
Q 001381 862 TSLFKALDDYSVDNRGDVGSWVREAAVDGLEICTYILCKRDFVPSPEKPQEVKSELPGNVTAEKTLFDANLATNLVAGIV 941 (1089)
Q Consensus 862 ~~Ll~~L~DYT~D~RGDVGSwVR~aa~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ll 941 (1089)
+.|...++|. .-.||.++++++..+...+. +..+. ..++..++
T Consensus 405 p~l~~~~~d~--------~~~vr~~~~~~l~~l~~~~~-------------------------~~~~~----~~l~~~l~ 447 (588)
T 1b3u_A 405 PAIVELAEDA--------KWRVRLAIIEYMPLLAGQLG-------------------------VEFFD----EKLNSLCM 447 (588)
T ss_dssp HHHHHHHTCS--------SHHHHHHHHHHHHHHHHHHC-------------------------GGGCC----HHHHHHHH
T ss_pred HHHHHHhcCC--------CchHHHHHHHHHHHHHHHcC-------------------------HHHHH----HHHHHHHH
Confidence 7777777552 34599999999987753221 11222 24566667
Q ss_pred HHhhhhhHHHHHHHHHHHHHHhhc
Q 001381 942 KQAVEKMDKLREAAAKVLRRILYN 965 (1089)
Q Consensus 942 rq~~EkiD~vR~~A~~~L~~l~~~ 965 (1089)
+...++-..||..|..++..+...
T Consensus 448 ~~l~d~~~~Vr~~a~~~l~~l~~~ 471 (588)
T 1b3u_A 448 AWLVDHVYAIREAATSNLKKLVEK 471 (588)
T ss_dssp HGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHH
Confidence 767778889999999999988654
No 4
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.70 E-value=8.7e-14 Score=176.00 Aligned_cols=484 Identities=13% Similarity=0.089 Sum_probs=316.4
Q ss_pred HHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhCcchhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHHhcCC----
Q 001381 380 DILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSLSEEVFSSVLELFSPGEGDGSWHGGCLALAELARRGL---- 455 (1089)
Q Consensus 380 e~vE~iI~~ll~~L~d~dt~vR~saAK~l~rI~~~L~~~~a~~vi~~il~~l~~~~~~~~wHg~~LaLael~~~~l---- 455 (1089)
+.-+.|-+.++..|.|.+..||..+|..++.|+..-++..-.++++.+++.+++. +....++++.+|++++..--
T Consensus 86 ~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~-~~~~r~~al~~L~~i~~~~~~~~~ 164 (852)
T 4fdd_A 86 GVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSE-DYNTCEGAFGALQKICEDSAEILD 164 (852)
T ss_dssp HHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCS-SHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHhHHHhc
Confidence 5678888999999999999999999999999999877666778999999988754 34567899999999877531
Q ss_pred --CCCCcccchHHHHHHhhhhhccccccCCChhhhhhhhHHHHHhhhccCccchhHHHHHHHHHHHHHHhcCCCchhhHH
Q 001381 456 --LLPSSLPKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRA 533 (1089)
Q Consensus 456 --l~p~~l~~il~~i~~~L~f~~r~~~~svG~~VRDAacfi~WslaR~~~~~~l~~~~~~l~~~Ll~~alfD~e~~iRRa 533 (1089)
.+...++.++|.+.+++. +-...||-+|+-.+..+.+..+ ..+.+++..++..+ ...+-|++..+|++
T Consensus 165 ~~~~~~~~~~il~~l~~~l~--------~~~~~vR~~A~~aL~~~~~~~~-~~~~~~~~~~l~~l-~~~~~d~~~~vr~~ 234 (852)
T 4fdd_A 165 SDVLDRPLNIMIPKFLQFFK--------HSSPKIRSHAVACVNQFIISRT-QALMLHIDSFIENL-FALAGDEEPEVRKN 234 (852)
T ss_dssp HCSSSSCHHHHHHHHTTTTT--------CSSHHHHHHHHHHHHTTTTTTC-HHHHTSHHHHHHHH-HHHHTCCCHHHHHH
T ss_pred hhhhcchHHHHHHHHHHHhc--------CCCHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHH-HHHcCCCCHHHHHH
Confidence 012235667777766553 1236799998877777776533 34445555565554 45677999999999
Q ss_pred HHHHHHHHhcccCCCCCCccceecccccchhhhHHHHHHHHHHHHhhhcchHHHHHHHHhCccCCCCHHHHHHHHHHHHH
Q 001381 534 AAAAFQENVGRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNKICHWDKVLRELAAEALSA 613 (1089)
Q Consensus 534 AsAAlQE~vGR~g~~p~GI~il~~~d~~~v~~r~~a~~~va~~va~~~~Y~~~li~~Ll~~~l~h~D~~iR~laa~aL~~ 613 (1089)
|..+|.+++...+. .+..|...+++.++. .+.|.|..+|..|.+.+..
T Consensus 235 a~~~L~~l~~~~~~-------------------------------~~~~~l~~l~~~l~~-~~~~~~~~vr~~a~e~l~~ 282 (852)
T 4fdd_A 235 VCRALVMLLEVRMD-------------------------------RLLPHMHNIVEYMLQ-RTQDQDENVALEACEFWLT 282 (852)
T ss_dssp HHHHHHHHHHHCHH-------------------------------HHGGGHHHHHHHHHH-HHTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCHH-------------------------------HHHHHHHHHHHHHHH-HccCCcHHHHHHHHHHHHH
Confidence 99999877553211 122355667777765 5678899999999999999
Q ss_pred HHccCc-----hhhHHHHHHHhcccc-----------CC-----------CChhhHHHHHHHHHHHHHHHhcccccCChh
Q 001381 614 LVKYDP-----EYFANFILEKLTPFT-----------LS-----------TDLCTRHGATLAAGEVVLALCKYDYALPAD 666 (1089)
Q Consensus 614 L~~~~~-----~~~~~~vlp~Ll~~l-----------~~-----------~d~~~RHG~lLalaevl~~l~~~~~~~~~~ 666 (1089)
++.... ......++|.+++.+ .+ .++..|..+..+++.+...+. +.
T Consensus 283 l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~-------~~ 355 (852)
T 4fdd_A 283 LAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR-------DE 355 (852)
T ss_dssp HTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG-------GG
T ss_pred HhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc-------HH
Confidence 875321 123446677777665 22 356789989989988887664 33
Q ss_pred HHHHHHhhhHHHHhhhhccCcchHHHHHHHHHHHHHhhhcCCCCchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 001381 667 KQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLPEKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQ 746 (1089)
Q Consensus 667 ~~~~i~~i~~~~~~~~l~r~~~gelir~a~~~lI~~ls~~~lp~~~~~~~~~~~~L~~~L~~~~~~V~~aAa~Al~~l~~ 746 (1089)
....+...+...... ...-+|++++..++.++...-+.....+......+...+.+++..||.+|+.++..+..
T Consensus 356 ~~~~l~~~l~~~l~~------~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~ 429 (852)
T 4fdd_A 356 LLPHILPLLKELLFH------HEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAH 429 (852)
T ss_dssp GHHHHHHHHHHHHTC------SSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 444444444443321 23578999999999887522111112456677778888899999999999999998876
Q ss_pred HhhhccCcchhhhhHHHHHHHhCCCChhhhhhHHHHhhccchHh---hhhhHHHHHHHHhhhccccCC------------
Q 001381 747 TYMVAADSGVVGGISLKYMEQLTDPNPAIRRGSALALGVLPYEL---LANSWRDVLLKLCSCCLIEEN------------ 811 (1089)
Q Consensus 747 ~y~~~~~~~~~~~~v~~~~~~L~s~~~~~r~G~a~aLG~lp~~~---~~~~~~~i~~~L~~~~~~~~~------------ 811 (1089)
..-..........+++.+++.+++.++..|..++.+|+.+-... ..+.+..++..|+.++.....
T Consensus 430 ~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~ 509 (852)
T 4fdd_A 430 WVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGT 509 (852)
T ss_dssp HHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 54221112234678888888898889999999999998874322 234455566555544321000
Q ss_pred ----------------------------CCCCCHHHHHHHHHHHHHHHhhhccccccccccCCcchhhhhhhhHHHHHHH
Q 001381 812 ----------------------------PEDRDTEARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTS 863 (1089)
Q Consensus 812 ----------------------------~~~~d~e~R~~al~sL~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 863 (1089)
..+.+.+.| .++++++.++..+|.. +.++...++..
T Consensus 510 l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~---------------~~~~~~~i~~~ 573 (852)
T 4fdd_A 510 LADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQSG---------------FLPYCEPVYQR 573 (852)
T ss_dssp HHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGG---------------GHHHHHHHHHH
T ss_pred HHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHhHh---------------HHHHHHHHHHH
Confidence 001122333 5666666666665542 11233444443
Q ss_pred HHHhcccC------------CCCCCCCcchHHHHHHHHHHHHHHHHhhccCCCCCCCCCccccccCCCCccccccccCHH
Q 001381 864 LFKALDDY------------SVDNRGDVGSWVREAAVDGLEICTYILCKRDFVPSPEKPQEVKSELPGNVTAEKTLFDAN 931 (1089)
Q Consensus 864 Ll~~L~DY------------T~D~RGDVGSwVR~aa~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 931 (1089)
+++.+.++ ..+ -.|. -+|..+++++..+..-+. .-+ ..
T Consensus 574 ~~~~l~~~l~~~~~~~~~~~~~~-~~d~--~~~~~~l~~l~~l~~~l~--------------------------~~~-~~ 623 (852)
T 4fdd_A 574 CVNLVQKTLAQAMLNNAQPDQYE-APDK--DFMIVALDLLSGLAEGLG--------------------------GNI-EQ 623 (852)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTSC-CCCT--HHHHHHHHHHHHHHHHHG--------------------------GGG-HH
T ss_pred HHHHHHHHHHHHHHhhcCCcccC-CCcc--hHHHHHHHHHHHHHHHHh--------------------------HhH-HH
Confidence 33333221 111 1122 278899999988764332 111 11
Q ss_pred HH--HHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhc
Q 001381 932 LA--TNLVAGIVKQAVEKMDKLREAAAKVLRRILYN 965 (1089)
Q Consensus 932 ~~--~~l~~~llrq~~EkiD~vR~~A~~~L~~l~~~ 965 (1089)
++ ..++..+++..-.+-..||..|..++..+...
T Consensus 624 ~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~ 659 (852)
T 4fdd_A 624 LVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKA 659 (852)
T ss_dssp HHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHH
Confidence 11 24566666666667889999999999988654
No 5
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.67 E-value=5.1e-13 Score=167.60 Aligned_cols=487 Identities=12% Similarity=0.047 Sum_probs=319.8
Q ss_pred HHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhh-CcchhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHHhcCCC--
Q 001381 380 DILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCL-TSSLSEEVFSSVLELFSPGEGDGSWHGGCLALAELARRGLL-- 456 (1089)
Q Consensus 380 e~vE~iI~~ll~~L~d~dt~vR~saAK~l~rI~~~L-~~~~a~~vi~~il~~l~~~~~~~~wHg~~LaLael~~~~ll-- 456 (1089)
+..+.|-+.+++.|.+.+..+|-.+|.+++.|+... |...-.++++.+++.+++..++...++++.++.+++..---
T Consensus 91 ~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~ 170 (861)
T 2bpt_A 91 EAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQS 170 (861)
T ss_dssp HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTS
T ss_pred HHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhh
Confidence 567888899999999999999999999999999985 43345789999999987643556789999999999985210
Q ss_pred --CCCcccchHHHHHHhhhhhccccccCCChhhhhhhhHHHHHhhhccCccchh-HHHHHHHHHHHHHHhcCCCchhhHH
Q 001381 457 --LPSSLPKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMR-NILEQIAPHLLTVACYDREVNCRRA 533 (1089)
Q Consensus 457 --~p~~l~~il~~i~~~L~f~~r~~~~svG~~VRDAacfi~WslaR~~~~~~l~-~~~~~l~~~Ll~~alfD~e~~iRRa 533 (1089)
+....+.+++.+.+++..+. .-..||.+|.-++.++....... +. ......+...+...+.|.+..+|++
T Consensus 171 ~~~~~~~~~ll~~l~~~l~~~~------~~~~vr~~al~~l~~~~~~~~~~-~~~~~~~~~ll~~l~~~~~~~~~~~r~~ 243 (861)
T 2bpt_A 171 QALVSSSNNILIAIVQGAQSTE------TSKAVRLAALNALADSLIFIKNN-MEREGERNYLMQVVCEATQAEDIEVQAA 243 (861)
T ss_dssp STTGGGHHHHHHHHHHHHSTTC------CCHHHHHHHHHHHHHHGGGCHHH-HTSHHHHHHHHHHHHHHHTCSCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhcCCC------CCHHHHHHHHHHHHHHHHHHHHH-ccChhHHHHHHHHHHHHhcCCCHHHHHH
Confidence 12345667777777664331 02569999888877765433211 11 0011223334456778999999999
Q ss_pred HHHHHHHHhcccCCCCCCccceecccccchhhhHHHHHHHHHHHHhhhcchH-HHHHHHHhCccCCCCHHHHHHHHHHHH
Q 001381 534 AAAAFQENVGRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLY-PFVDELLYNKICHWDKVLRELAAEALS 612 (1089)
Q Consensus 534 AsAAlQE~vGR~g~~p~GI~il~~~d~~~v~~r~~a~~~va~~va~~~~Y~~-~li~~Ll~~~l~h~D~~iR~laa~aL~ 612 (1089)
|..+|.+++.+++.. +..|.. .+++-++. .+.+.|..+|..|.+.+.
T Consensus 244 a~~~l~~l~~~~~~~-------------------------------~~~~l~~~l~~~~~~-~~~~~~~~vr~~a~~~l~ 291 (861)
T 2bpt_A 244 AFGCLCKIMSKYYTF-------------------------------MKPYMEQALYALTIA-TMKSPNDKVASMTVEFWS 291 (861)
T ss_dssp HHHHHHHHHHHHGGG-------------------------------CHHHHHHTHHHHHHH-HTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-------------------------------HHHHHHHHHHHHHHH-HHcCCcHHHHHHHHHHHH
Confidence 999998887665321 011222 34443333 556889999999999999
Q ss_pred HHHccC-----------------ch---hhHHHHHHHhccccCC-------CChhhHHHHHHHHHHHHHHHhcccccCCh
Q 001381 613 ALVKYD-----------------PE---YFANFILEKLTPFTLS-------TDLCTRHGATLAAGEVVLALCKYDYALPA 665 (1089)
Q Consensus 613 ~L~~~~-----------------~~---~~~~~vlp~Ll~~l~~-------~d~~~RHG~lLalaevl~~l~~~~~~~~~ 665 (1089)
.++... +. .....++|.+++.+.. .++..|..+.-++..+...+. +
T Consensus 292 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~-------~ 364 (861)
T 2bpt_A 292 TICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG-------N 364 (861)
T ss_dssp HHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG-------G
T ss_pred HHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc-------H
Confidence 888652 11 1235678888776653 347888888888888877664 2
Q ss_pred hHHHHHHhhhHHHHhhhhccCcchHHHHHHHHHHHHHhhhcCCCC-chhhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 001381 666 DKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSL-PEKTKRSLLDTLNENLRHPNSQIQNAAVKALKPF 744 (1089)
Q Consensus 666 ~~~~~i~~i~~~~~~~~l~r~~~gelir~a~~~lI~~ls~~~lp~-~~~~~~~~~~~L~~~L~~~~~~V~~aAa~Al~~l 744 (1089)
.....+...+...... ...-.|++++..++.++...-|. ....++.....+...+.+++..||.+++.++..+
T Consensus 365 ~~~~~l~~~l~~~l~~------~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l 438 (861)
T 2bpt_A 365 HILEPVLEFVEQNITA------DNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRI 438 (861)
T ss_dssp GGHHHHHHHHHHHTTC------SSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCC------CChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 3334444444443321 12358999999999887421111 0123445566677778999999999999999988
Q ss_pred HHHhhhcc-CcchhhhhHHHHHHHhCCCChhhhhhHHHHhhccchH-------hhhhhHHHHHHHHhhhccccCCCCCCC
Q 001381 745 VQTYMVAA-DSGVVGGISLKYMEQLTDPNPAIRRGSALALGVLPYE-------LLANSWRDVLLKLCSCCLIEENPEDRD 816 (1089)
Q Consensus 745 ~~~y~~~~-~~~~~~~~v~~~~~~L~s~~~~~r~G~a~aLG~lp~~-------~~~~~~~~i~~~L~~~~~~~~~~~~~d 816 (1089)
....-... +......+++.+++.+++. +..|..++.+++.+-.. .+.+++..++..|+..+.. .+.+
T Consensus 439 ~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~----~d~~ 513 (861)
T 2bpt_A 439 ADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANR----IDNE 513 (861)
T ss_dssp HHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTC----SCCG
T ss_pred HHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhC----cCcc
Confidence 77542211 1233477888888888765 77888888888877443 2346678888888877631 1223
Q ss_pred HHHHHHHHHHHHHHHhhhccccccccccCCcchhhhhhhhHHHHHHHHHHhcccCC-CCCC--C----CcchHHHHHHHH
Q 001381 817 TEARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYS-VDNR--G----DVGSWVREAAVD 889 (1089)
Q Consensus 817 ~e~R~~al~sL~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~L~DYT-~D~R--G----DVGSwVR~aa~~ 889 (1089)
...|..++.+++.++...|.. ....+..+++.++..|.++- ...+ . |--.-+|..+++
T Consensus 514 ~~vr~~a~~al~~l~~~~~~~---------------~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 578 (861)
T 2bpt_A 514 FNARASAFSALTTMVEYATDT---------------VAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILT 578 (861)
T ss_dssp GGHHHHHHHHHHHHHHHCCGG---------------GHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcchh---------------hHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHH
Confidence 578999999999998776531 12455667777777776541 1000 0 223457888999
Q ss_pred HHHHHHHHhhccCCCCCCCCCccccccCCCCccccccccCHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHhhc
Q 001381 890 GLEICTYILCKRDFVPSPEKPQEVKSELPGNVTAEKTLFDANLATNLVAGIVKQAVEKMD-KLREAAAKVLRRILYN 965 (1089)
Q Consensus 890 ~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~llrq~~EkiD-~vR~~A~~~L~~l~~~ 965 (1089)
++..++..+. .-+ ......++..+++.....-. .+|..+..++..+...
T Consensus 579 ~l~~l~~~~~--------------------------~~~-~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~ 628 (861)
T 2bpt_A 579 VLAAVIRKSP--------------------------SSV-EPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAAS 628 (861)
T ss_dssp HHHHHHHHCG--------------------------GGT-GGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhh--------------------------hhh-HHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHH
Confidence 9887753221 111 23455666666655444333 7999999888877644
No 6
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.67 E-value=7.3e-13 Score=174.00 Aligned_cols=515 Identities=13% Similarity=0.079 Sum_probs=331.4
Q ss_pred HHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhCcc---------hhhhHHHHHHhhcCCCCCCcchHHHHHHHHHH
Q 001381 380 DILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSS---------LSEEVFSSVLELFSPGEGDGSWHGGCLALAEL 450 (1089)
Q Consensus 380 e~vE~iI~~ll~~L~d~dt~vR~saAK~l~rI~~~L~~~---------~a~~vi~~il~~l~~~~~~~~wHg~~LaLael 450 (1089)
+.++.+++.++..|.|.+..||.+++++++.|+..++.+ ...++++.+++.++...+....++++.+++++
T Consensus 82 ~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~ 161 (1230)
T 1u6g_C 82 YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADM 161 (1230)
T ss_dssp HHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence 568999999999999999999999999999999999876 57899999999987533455679999999999
Q ss_pred Hhc-CCCCCCcccchHHHHHHhhhhhccccccCCChhhhhhhhHHHHHhhhccCccchhHHHHHHHHHHHHHHhcC-CCc
Q 001381 451 ARR-GLLLPSSLPKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYD-REV 528 (1089)
Q Consensus 451 ~~~-~ll~p~~l~~il~~i~~~L~f~~r~~~~svG~~VRDAacfi~WslaR~~~~~~l~~~~~~l~~~Ll~~alfD-~e~ 528 (1089)
+.. |-.+..+++.+++.+...+... ...||.+|+-.+=+++.....+.+..++..+...| .+ .+.
T Consensus 162 ~~~~~~~l~~~~~~ll~~l~~~L~~~--------~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L-----~~~~~~ 228 (1230)
T 1u6g_C 162 LSRQGGLLVNFHPSILTCLLPQLTSP--------RLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSEL-----SKNDSM 228 (1230)
T ss_dssp HHHTCSSCTTTHHHHHHHHGGGGGCS--------SHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHH-----HHTCSS
T ss_pred HHHhHhHHHHHHHHHHHHHHHHHcCC--------cHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-----ccCCch
Confidence 865 3223347788888888777432 25799999999888988766544444444433333 33 346
Q ss_pred hhhHHHHHHHHHHhcccCC--CCCCccceecc-cc---cchhhhHHHHHHHHHHHHhhh----cchHHHHHHHHhCccC-
Q 001381 529 NCRRAAAAAFQENVGRQGN--YPHGIDIVNTA-DY---FSLSSRVYSYLHVAVFIAQYE----GYLYPFVDELLYNKIC- 597 (1089)
Q Consensus 529 ~iRRaAsAAlQE~vGR~g~--~p~GI~il~~~-d~---~~v~~r~~a~~~va~~va~~~----~Y~~~li~~Ll~~~l~- 597 (1089)
..|++|..++.+++...|. .||--+++... .. -.-..|..++.-+...+..++ .|.+.+++.++.. +.
T Consensus 229 ~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~-l~~ 307 (1230)
T 1u6g_C 229 STTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKY-LTY 307 (1230)
T ss_dssp CSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTC-CCC
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHH-hCC
Confidence 8999999999998765542 12211222111 00 011234444433343333333 3777788877752 21
Q ss_pred C---------------------C---------------CHHHHHHHHHHHHHHHccCch---hhHHHHHHHhccccCCCC
Q 001381 598 H---------------------W---------------DKVLRELAAEALSALVKYDPE---YFANFILEKLTPFTLSTD 638 (1089)
Q Consensus 598 h---------------------~---------------D~~iR~laa~aL~~L~~~~~~---~~~~~vlp~Ll~~l~~~d 638 (1089)
+ + ...+|+.|+.+|+.++...|+ .+...++|.+...+.+.+
T Consensus 308 d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~ 387 (1230)
T 1u6g_C 308 DPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKERE 387 (1230)
T ss_dssp C------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSS
T ss_pred CCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCc
Confidence 0 0 124799999999999986664 233456777877888888
Q ss_pred hhhHHHHHHHHHHHHHHHhcccccC----------Ch-hH-HHHHHhhhHHHHhhhhccCcchHHHHHHHHHHHHHhhhc
Q 001381 639 LCTRHGATLAAGEVVLALCKYDYAL----------PA-DK-QKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISLS 706 (1089)
Q Consensus 639 ~~~RHG~lLalaevl~~l~~~~~~~----------~~-~~-~~~i~~i~~~~~~~~l~r~~~gelir~a~~~lI~~ls~~ 706 (1089)
..+|..++-++..++..+....... +. .. ...+..+++.+.+ ..+. ...-+|+++|..++.++..
T Consensus 388 ~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~--~l~~-~~~~vr~~~~~~L~~l~~~ 464 (1230)
T 1u6g_C 388 ENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHK--QMKE-KSVKTRQCCFNMLTELVNV 464 (1230)
T ss_dssp SHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHH--HTTC-SCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHH--Hhcc-CCHHHHHHHHHHHHHHHHH
Confidence 8999989988988887654211000 00 11 1112223333221 1222 2346788999999887654
Q ss_pred CCCCchhhHHHHHHHHHHhcCCCcH--HHHHHHHHHHHHHHHHhhhccCcchhhhhHHHHHHHhCCCChhhhhhHHHHhh
Q 001381 707 FVSLPEKTKRSLLDTLNENLRHPNS--QIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLTDPNPAIRRGSALALG 784 (1089)
Q Consensus 707 ~lp~~~~~~~~~~~~L~~~L~~~~~--~V~~aAa~Al~~l~~~y~~~~~~~~~~~~v~~~~~~L~s~~~~~r~G~a~aLG 784 (1089)
..+.-...++.+...+...|.++.. .++..+..++..++...-...-....+.+++.+++.+++.+...|..+..+++
T Consensus 465 ~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~ 544 (1230)
T 1u6g_C 465 LPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQ 544 (1230)
T ss_dssp STTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHH
Confidence 2111123556677777777877764 89988888888776532110000022567778887787777655554444454
Q ss_pred ccchHh----------hhhhHHHHHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHhhhccccccccccCCcchhhhhh
Q 001381 785 VLPYEL----------LANSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFH 854 (1089)
Q Consensus 785 ~lp~~~----------~~~~~~~i~~~L~~~~~~~~~~~~~d~e~R~~al~sL~~i~~~~g~~~~~~~~~~~~~~~~~~~ 854 (1089)
.+-..+ +.+....++..|+..+.. .+.+.+.|.+|+.+++.++...|.. ..
T Consensus 545 ~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~----~d~~~~vr~~a~~~lg~L~~~~g~~---------------~~ 605 (1230)
T 1u6g_C 545 QLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKA----ADIDQEVKERAISCMGQIICNLGDN---------------LG 605 (1230)
T ss_dssp HHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSC----SSSCHHHHHHHHHHHHHHHHHTGGG---------------CC
T ss_pred HHHHHhcCcccccccchHHHHHHHHHHHHHHHhc----cCCCHHHHHHHHHHHHHHHHHhCch---------------hh
Confidence 443221 234566777777766531 3457899999999999999887642 12
Q ss_pred hhHHHHHHHHHHhcccCCCCCCCCcchHHHHHHHHHHHHHHHHhhccCCCCCCCCCccccccCCCCccccccccCHHHHH
Q 001381 855 LIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEICTYILCKRDFVPSPEKPQEVKSELPGNVTAEKTLFDANLAT 934 (1089)
Q Consensus 855 ~~~~~i~~~Ll~~L~DYT~D~RGDVGSwVR~aa~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 934 (1089)
..+..+++.|...+.++ ++|..+++++..+. .+ ..+. --...+.
T Consensus 606 ~~~~~~l~~L~~~l~~e----------~~r~~~~~al~~i~---~~----------------------~~~~-~~~~~~~ 649 (1230)
T 1u6g_C 606 SDLPNTLQIFLERLKNE----------ITRLTTVKALTLIA---GS----------------------PLKI-DLRPVLG 649 (1230)
T ss_dssp THHHHHHHHHHHHTTSS----------SHHHHHHHHHHHHT---TC----------------------SSCC-CCHHHHH
T ss_pred hhHHHHHHHHHHHhccc----------hhHHHHHHHHHHHH---hC----------------------cccc-chHHHHH
Confidence 45678888888888765 37999999997763 10 0000 1146778
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcc
Q 001381 935 NLVAGIVKQAVEKMDKLREAAAKVLRRILYNK 966 (1089)
Q Consensus 935 ~l~~~llrq~~EkiD~vR~~A~~~L~~l~~~~ 966 (1089)
.++..|.+.....-..+|..|..++.++....
T Consensus 650 ~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~ 681 (1230)
T 1u6g_C 650 EGVPILASFLRKNQRALKLGTLSALDILIKNY 681 (1230)
T ss_dssp HHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcc
Confidence 88888888887788899999999999998654
No 7
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.66 E-value=6.6e-13 Score=166.63 Aligned_cols=660 Identities=11% Similarity=0.051 Sum_probs=377.1
Q ss_pred hhHHHHHHHHHHHHHhhcCCCCCCCCCcccccccCCCCCChhHHHHHHHHHHHhhhcC---CchhhHHHHHHHHHhcC--
Q 001381 156 EMEAKCVILLWLSILVLVPFDISSVDTSIANNENLGQNEPAPLVMRILGFCKDYLSNA---GPMRTIAGLLLAKLLTR-- 230 (1089)
Q Consensus 156 ~We~~YvlLlWLS~Lvl~PFdL~~id~~~~~~~~~~~~~~~~l~~rIl~l~~~yL~~~---~k~r~~Aa~LLsrl~tR-- 230 (1089)
++..|...+.-|..++.- ++-+ +. . ..+....|+......+..+ ...|.+|...+..++..
T Consensus 148 ~~~~r~~al~~l~~l~~~-~~~~-~~--~----------~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~ 213 (861)
T 2bpt_A 148 PENVKRASLLALGYMCES-ADPQ-SQ--A----------LVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIK 213 (861)
T ss_dssp CHHHHHHHHHHHHHHHHT-SSTT-SS--T----------TGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCH
T ss_pred CHHHHHHHHHHHHHHHHc-CChh-hh--H----------HHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777652 1100 00 0 1234566777777777664 46788898888886431
Q ss_pred CChHHH--HHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHhcChhhhhhhhH-HHHHhhhhhhccCcCCCchhHH
Q 001381 231 PDMPTA--FASFVEWTHEVLSSVTDDVMNHFRLLGVVEALAAIFKAGGRKVLLDVIP-VVWNDASTMLKSGSAARSPLLR 307 (1089)
Q Consensus 231 ~D~~~~--l~~f~~w~~~~l~~~~~~~~~~~~~~G~L~~l~~ilk~~~~~~l~~~~~-~i~~~~~~l~~~~~~~~~~l~r 307 (1089)
..+... .+.++....+.+... +. ..+. +.+..+..+.+..+ ..+.+++. .+++.......+. +.-+|
T Consensus 214 ~~~~~~~~~~~ll~~l~~~~~~~-~~---~~r~-~a~~~l~~l~~~~~-~~~~~~l~~~l~~~~~~~~~~~----~~~vr 283 (861)
T 2bpt_A 214 NNMEREGERNYLMQVVCEATQAE-DI---EVQA-AAFGCLCKIMSKYY-TFMKPYMEQALYALTIATMKSP----NDKVA 283 (861)
T ss_dssp HHHTSHHHHHHHHHHHHHHHTCS-CH---HHHH-HHHHHHHHHHHHHG-GGCHHHHHHTHHHHHHHHTTCS----SHHHH
T ss_pred HHccChhHHHHHHHHHHHHhcCC-CH---HHHH-HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCC----cHHHH
Confidence 111000 011222112222211 11 1222 55666666665443 34556666 6666322222222 45566
Q ss_pred HHHHHHHHHhhhcccCCCCccccccccccccccccccccccccccccCccccccccccccCCCCCCCCCCchHHHHHHHH
Q 001381 308 KYLMKLTQRLGLTCLPRCTSAWRYVIRTSSLGENMSSRAAFREIDQCDHSVVDSLKSEQNRNCPEDEGMDVPDILEEIIE 387 (1089)
Q Consensus 308 Kl~~Kl~~rlal~~L~pr~~~wrY~rg~rsL~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~e~vE~iI~ 387 (1089)
...+.++..++...-. .... + .+ . ...+. .....+...++.+++
T Consensus 284 ~~a~~~l~~l~~~~~~------------~~~~-~------~~---------------~-~~~~~-~~~~~~~~~~~~il~ 327 (861)
T 2bpt_A 284 SMTVEFWSTICEEEID------------IAYE-L------AQ---------------F-PQSPL-QSYNFALSSIKDVVP 327 (861)
T ss_dssp HHHHHHHHHHHHHHHH------------HHHH-H------HH---------------C-TTCSC-CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh------------hhhh-h------hh---------------c-cCCch-hhHHHHHHHHHHHHH
Confidence 6666666555422100 0000 0 00 0 00000 000012345688888
Q ss_pred HHHhhcCC-------CChhHHHHHHHHHHHHHhhhCcchhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHHhcCC--CCC
Q 001381 388 ILLSGLRD-------TDTVVRWSAAKGIGRITSCLTSSLSEEVFSSVLELFSPGEGDGSWHGGCLALAELARRGL--LLP 458 (1089)
Q Consensus 388 ~ll~~L~d-------~dt~vR~saAK~l~rI~~~L~~~~a~~vi~~il~~l~~~~~~~~wHg~~LaLael~~~~l--l~p 458 (1089)
.++..|.+ .+..+|.++++.++.++..++.+....+++.+.+.+++. +....++++.+++.++..-- ...
T Consensus 328 ~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~-~~~~r~~a~~~l~~i~~~~~~~~~~ 406 (861)
T 2bpt_A 328 NLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITAD-NWRNREAAVMAFGSIMDGPDKVQRT 406 (861)
T ss_dssp HHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHTSSSSCHHHHH
T ss_pred HHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCC-ChhHHHHHHHHHHHHHcCCCHHHHH
Confidence 88888874 235899999999999999999888888888888888643 22233678999998874210 011
Q ss_pred CcccchHHHHHHhhhhhccccccCCChhhhhhhhHHHHHhhhccCccc-hhHHHHHHHHHHHHHHhcCCCchhhHHHHHH
Q 001381 459 SSLPKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTD-MRNILEQIAPHLLTVACYDREVNCRRAAAAA 537 (1089)
Q Consensus 459 ~~l~~il~~i~~~L~f~~r~~~~svG~~VRDAacfi~WslaR~~~~~~-l~~~~~~l~~~Ll~~alfD~e~~iRRaAsAA 537 (1089)
.+++.++|.+...+... -..||+++|+++=.+++...+.. -.+++..++..|+ .++-|. ..+|++|..|
T Consensus 407 ~~l~~il~~l~~~l~d~--------~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~-~~l~~~-~~v~~~a~~a 476 (861)
T 2bpt_A 407 YYVHQALPSILNLMNDQ--------SLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACL-IGLQDH-PKVATNCSWT 476 (861)
T ss_dssp HHHHHHHHHHHHGGGCS--------CHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHH-HHHTSC-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCC--------cHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHH-HHhccC-hHHHHHHHHH
Confidence 24566778877776432 26799999876666666554321 1346666666654 455565 8999999999
Q ss_pred HHHHhcccCCCCCCccceecccccchhhhHHHHHHHHHHHHhhhcchHHHHHHHHhCccCCCC--HHHHHHHHHHHHHHH
Q 001381 538 FQENVGRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNKICHWD--KVLRELAAEALSALV 615 (1089)
Q Consensus 538 lQE~vGR~g~~p~GI~il~~~d~~~v~~r~~a~~~va~~va~~~~Y~~~li~~Ll~~~l~h~D--~~iR~laa~aL~~L~ 615 (1089)
+..++...+..+ -..+..|.+.+++.|+. .+.+.| ..+|..+.++++.++
T Consensus 477 l~~l~~~~~~~~---------------------------~~~l~~~~~~il~~L~~-~l~~~d~~~~vr~~a~~al~~l~ 528 (861)
T 2bpt_A 477 IINLVEQLAEAT---------------------------PSPIYNFYPALVDGLIG-AANRIDNEFNARASAFSALTTMV 528 (861)
T ss_dssp HHHHHHHHSSSS---------------------------SCGGGGGHHHHHHHHHH-HHTCSCCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHhccccc---------------------------chhhHHHHHHHHHHHHH-HHhCcCcchHHHHHHHHHHHHHH
Confidence 887654433100 01123567778888876 454444 789999999999999
Q ss_pred ccCchhh---HHHHHHHhccccCC---------------CChhhHHHHHHHHHHHHHHHhcccccCChhHHHHHHhhhHH
Q 001381 616 KYDPEYF---ANFILEKLTPFTLS---------------TDLCTRHGATLAAGEVVLALCKYDYALPADKQKIVAGIVPG 677 (1089)
Q Consensus 616 ~~~~~~~---~~~vlp~Ll~~l~~---------------~d~~~RHG~lLalaevl~~l~~~~~~~~~~~~~~i~~i~~~ 677 (1089)
...+..+ ...++|.+++.+.. .....|.+++-+++.++..+.... ......+...+..
T Consensus 529 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~----~~~~~~l~~~l~~ 604 (861)
T 2bpt_A 529 EYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSV----EPVADMLMGLFFR 604 (861)
T ss_dssp HHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGT----GGGHHHHHHHHHH
T ss_pred HHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhh----HHHHHHHHHHHHH
Confidence 8877543 34556666555431 133567788888888887765311 1112223222222
Q ss_pred HHhhhhccCcchHHHHHHHHHHHHHhhhcCCCCchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCcchh
Q 001381 678 IEKARLYRGKGGEIMRSAVSRFIECISLSFVSLPEKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVV 757 (1089)
Q Consensus 678 ~~~~~l~r~~~gelir~a~~~lI~~ls~~~lp~~~~~~~~~~~~L~~~L~~~~~~V~~aAa~Al~~l~~~y~~~~~~~~~ 757 (1089)
..+. ...+-+++.++..+..++...-+--....+.+...+..++.+++..++..|..++..+....-.. -....
T Consensus 605 ~l~~-----~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~-~~~~~ 678 (861)
T 2bpt_A 605 LLEK-----KDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEED-FRRYS 678 (861)
T ss_dssp HHHS-----TTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGG-GHHHH
T ss_pred HHcc-----CCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchh-ccchH
Confidence 2221 11115677778888776642111011245667777777778888899999999998887653110 00112
Q ss_pred hhhHHHHHHHhCCCC--hhhhhhHHHHhhccchHh---hhhhHHHHHHHHhhhccccCCCCCCC-----HHHHHHHHHHH
Q 001381 758 GGISLKYMEQLTDPN--PAIRRGSALALGVLPYEL---LANSWRDVLLKLCSCCLIEENPEDRD-----TEARVNAVRGL 827 (1089)
Q Consensus 758 ~~~v~~~~~~L~s~~--~~~r~G~a~aLG~lp~~~---~~~~~~~i~~~L~~~~~~~~~~~~~d-----~e~R~~al~sL 827 (1089)
+.+++.+++.+++.+ ...|..+..++|.+-... +.+.+..++..|...+......++.| ...|..+++++
T Consensus 679 ~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~ 758 (861)
T 2bpt_A 679 DAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAY 758 (861)
T ss_dssp HHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHH
Confidence 556666667776543 778888888988875433 34556677777776654221101111 35799999999
Q ss_pred HHHHhhhccccccccccCCcchhhhhhhhHHHHHHHHHHhcccCCCCCCCCcchHHHHHHHHHHHHHHHHhhccCCCCCC
Q 001381 828 VSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEICTYILCKRDFVPSP 907 (1089)
Q Consensus 828 ~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~L~DYT~D~RGDVGSwVR~aa~~~l~~l~~ll~~~~~~~~~ 907 (1089)
..++..+|.. + ....+++..+++.|..++.|-.- .- -.-||.+|++++..+...+.
T Consensus 759 ~~i~~~l~~~--~----------~~~~~~~~~i~~~l~~~~~d~~~--~~--~~~vr~~a~~~l~~l~~~~~-------- 814 (861)
T 2bpt_A 759 VGIVAGLHDK--P----------EALFPYVGTIFQFIAQVAEDPQL--YS--EDATSRAAVGLIGDIAAMFP-------- 814 (861)
T ss_dssp HHHHHHTTTC--H----------HHHGGGHHHHHHHHHHHHHCHHH--HT--SHHHHHHHHHHHHHHHHHCT--------
T ss_pred HHHHHHHccC--H----------HHHHHHHHHHHHHHHHHHcCccc--CC--cHHHHHHHHHHHHHHHHHcC--------
Confidence 9999877631 0 12346778888888888865100 00 12499999999988763321
Q ss_pred CCCccccccCCCCccccccccCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 001381 908 EKPQEVKSELPGNVTAEKTLFDANLATNLVAGIVKQAVEKMDKLREAAAKVLRRI 962 (1089)
Q Consensus 908 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~llrq~~EkiD~vR~~A~~~L~~l 962 (1089)
| ......+....+..++.. ++..-++-+++|..|..++..+
T Consensus 815 -----------g--~~~~~~~~~~~~~~ll~~-l~~~~~~~~~~~~~~~wa~~~~ 855 (861)
T 2bpt_A 815 -----------D--GSIKQFYGQDWVIDYIKR-TRSGQLFSQATKDTARWAREQQ 855 (861)
T ss_dssp -----------T--STTGGGTTCHHHHHHHHH-HHHCSSSCHHHHHHHHHHHHHH
T ss_pred -----------C--chHHHHHhcHHHHHHHHH-HhhccCCCHHHHHHHHHHHHHH
Confidence 0 111222322333333322 2222367778999888776655
No 8
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.66 E-value=1.3e-12 Score=165.27 Aligned_cols=520 Identities=13% Similarity=0.128 Sum_probs=318.0
Q ss_pred HHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhCcch---hhhHHHHHHhhcCCCCCCcchHHHHHHHHHHHhcCC-
Q 001381 380 DILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSL---SEEVFSSVLELFSPGEGDGSWHGGCLALAELARRGL- 455 (1089)
Q Consensus 380 e~vE~iI~~ll~~L~d~dt~vR~saAK~l~rI~~~L~~~~---a~~vi~~il~~l~~~~~~~~wHg~~LaLael~~~~l- 455 (1089)
..++.+++.|+..++|.+..||.+|.++++.++...+..+ .+++++.++..+++. ++....++|-+|+.++...-
T Consensus 170 ~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~-~~~vr~~a~~~L~~l~~~~~~ 248 (852)
T 4fdd_A 170 RPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDE-EPEVRKNVCRALVMLLEVRMD 248 (852)
T ss_dssp SCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCC-CHHHHHHHHHHHHHHHHHCHH
T ss_pred chHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHhCHH
Confidence 4588899999999999999999999999998887665433 457888888877543 33445678888888877532
Q ss_pred CCCCcccchHHHHHHhhhhhccccccCCChhhhhhhhHHHHHhhhcc-CccchhHHHHHHHHHHHHHHh----------c
Q 001381 456 LLPSSLPKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAY-CHTDMRNILEQIAPHLLTVAC----------Y 524 (1089)
Q Consensus 456 l~p~~l~~il~~i~~~L~f~~r~~~~svG~~VRDAacfi~WslaR~~-~~~~l~~~~~~l~~~Ll~~al----------f 524 (1089)
.+..+++.+++.+.+.+.. ....||-.||-..=++++.- ....+.|++..++..++.... -
T Consensus 249 ~~~~~l~~l~~~l~~~~~~--------~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~ 320 (852)
T 4fdd_A 249 RLLPHMHNIVEYMLQRTQD--------QDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKG 320 (852)
T ss_dssp HHGGGHHHHHHHHHHHHTC--------SSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHccC--------CcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcC
Confidence 1223567778887766532 23678888875544454431 112356777777766643321 2
Q ss_pred C-----------CCchhhHHHHHHHHHHhcccCC--CCCCccceecc-cccchhhhHHHHHHHHHHHH----hhhcchHH
Q 001381 525 D-----------REVNCRRAAAAAFQENVGRQGN--YPHGIDIVNTA-DYFSLSSRVYSYLHVAVFIA----QYEGYLYP 586 (1089)
Q Consensus 525 D-----------~e~~iRRaAsAAlQE~vGR~g~--~p~GI~il~~~-d~~~v~~r~~a~~~va~~va----~~~~Y~~~ 586 (1089)
| .++++|++|..++..+....|. +|+-+..+... .--....|..|...++.... .+..|...
T Consensus 321 d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~ 400 (852)
T 4fdd_A 321 DVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPE 400 (852)
T ss_dssp ------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHH
T ss_pred CcccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 3 5789999999999887644442 11111111100 00022344444333333222 23357888
Q ss_pred HHHHHHhCccCCCCHHHHHHHHHHHHHHHccCc----hhhHHHHHHHhccccCCCChhhHHHHHHHHHHHHHHHhccccc
Q 001381 587 FVDELLYNKICHWDKVLRELAAEALSALVKYDP----EYFANFILEKLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYA 662 (1089)
Q Consensus 587 li~~Ll~~~l~h~D~~iR~laa~aL~~L~~~~~----~~~~~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~l~~~~~~ 662 (1089)
+++.|+. .+.+.+..+|..|+.++++++...+ ......++|.+++.+.+.+..+|..++.+++.+.........+
T Consensus 401 ~l~~l~~-~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~ 479 (852)
T 4fdd_A 401 LIPHLIQ-CLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVP 479 (852)
T ss_dssp HHHHHHH-HTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGG
T ss_pred HHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHh
Confidence 8988886 7889999999999999999987432 2345678899999888889999999999999998776532222
Q ss_pred CChhHHHHHHhhhHHHHhh-------------------------------------hhccCcchHHHHHHHHHHHHHhhh
Q 001381 663 LPADKQKIVAGIVPGIEKA-------------------------------------RLYRGKGGEIMRSAVSRFIECISL 705 (1089)
Q Consensus 663 ~~~~~~~~i~~i~~~~~~~-------------------------------------~l~r~~~gelir~a~~~lI~~ls~ 705 (1089)
.-+.....+...+....+. ...+....++ + .++.-+..++.
T Consensus 480 ~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~-~-~~~~~l~~i~~ 557 (852)
T 4fdd_A 480 YLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDL-F-PLLECLSSVAT 557 (852)
T ss_dssp GHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTH-H-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHH-H-HHHHHHHHHHH
Confidence 1112222111111110000 0000001111 1 12222222221
Q ss_pred c----CCCCchhhHHHHHHHHHHhc-------------CCCcHHHHHHHHHHHHHHHHHhhhccCcch--hhhhHHHHHH
Q 001381 706 S----FVSLPEKTKRSLLDTLNENL-------------RHPNSQIQNAAVKALKPFVQTYMVAADSGV--VGGISLKYME 766 (1089)
Q Consensus 706 ~----~lp~~~~~~~~~~~~L~~~L-------------~~~~~~V~~aAa~Al~~l~~~y~~~~~~~~--~~~~v~~~~~ 766 (1089)
. -.|....+.......+..++ ..++.+++..+..++..+....-... ... .+.+++.+++
T Consensus 558 ~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~-~~~~~~~~~~~~l~~ 636 (852)
T 4fdd_A 558 ALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNI-EQLVARSNILTLMYQ 636 (852)
T ss_dssp HHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGG-HHHHHTCCHHHHHHH
T ss_pred HHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhH-HHHhcCCcHHHHHHH
Confidence 1 11111223333444444432 23467788888888888877652110 000 1456777777
Q ss_pred HhCCCChhhhhhHHHHhhccchHh---hhhhHHHHHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHhhhccccccccc
Q 001381 767 QLTDPNPAIRRGSALALGVLPYEL---LANSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQSQENSLI 843 (1089)
Q Consensus 767 ~L~s~~~~~r~G~a~aLG~lp~~~---~~~~~~~i~~~L~~~~~~~~~~~~~d~e~R~~al~sL~~i~~~~g~~~~~~~~ 843 (1089)
.+++.++..|..+..++|.+-... +.+.+..++..|+..+ ...+.+.|.+|+.+++.++..+|..
T Consensus 637 ~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l------~~~~~~v~~~a~~alg~i~~~~~~~------ 704 (852)
T 4fdd_A 637 CMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNL------NPEFISVCNNATWAIGEISIQMGIE------ 704 (852)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTC------CTTSHHHHHHHHHHHHHHHHHHGGG------
T ss_pred HhCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc------CccchHHHHHHHHHHHHHHHHhhHh------
Confidence 778878889999999999875433 3456677787787775 3446899999999999999887642
Q ss_pred cCCcchhhhhhhhHHHHHHHHHHhcccCCCCCCCCcchHHHHHHHHHHHHHHHHhhccCCCCCCCCCccccccCCCCccc
Q 001381 844 HSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEICTYILCKRDFVPSPEKPQEVKSELPGNVTA 923 (1089)
Q Consensus 844 ~~~~~~~~~~~~~~~~i~~~Ll~~L~DYT~D~RGDVGSwVR~aa~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 923 (1089)
..++...+++.|+.-+++- ++-+-||+.|+.++..+...
T Consensus 705 ---------~~p~~~~il~~L~~~l~~~------~~~~~~~~~a~~~igrl~~~-------------------------- 743 (852)
T 4fdd_A 705 ---------MQPYIPMVLHQLVEIINRP------NTPKTLLENTAITIGRLGYV-------------------------- 743 (852)
T ss_dssp ---------GGGGTHHHHHHHHHHHTCS------SCCHHHHHHHHHHHHHHHHH--------------------------
T ss_pred ---------HHHHHHHHHHHHHHHhCCC------CCCchHHHHHHHHHHHHHHh--------------------------
Confidence 2356678889998888642 23456999999999887521
Q ss_pred cccccCHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHhhcc
Q 001381 924 EKTLFDANLATNLVAGIVKQAVEKMD-KLREAAAKVLRRILYNK 966 (1089)
Q Consensus 924 ~~~~~~~~~~~~l~~~llrq~~EkiD-~vR~~A~~~L~~l~~~~ 966 (1089)
.+..+. +.+.+++...++-.-.+-| ..|..|.+.|+.++...
T Consensus 744 ~~~~~~-~~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~~ 786 (852)
T 4fdd_A 744 CPQEVA-PMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVN 786 (852)
T ss_dssp CHHHHG-GGHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHC
T ss_pred CHHHhC-ccHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhC
Confidence 112221 2234444444443333222 36999999999998764
No 9
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.66 E-value=1.5e-12 Score=163.76 Aligned_cols=515 Identities=13% Similarity=0.103 Sum_probs=330.7
Q ss_pred HHHHHHHHHhhcCC--CChhHHHHHHHHHHHHHh---------------hhCcchhhhHHHHHHhhcCCCCCCcchHHHH
Q 001381 382 LEEIIEILLSGLRD--TDTVVRWSAAKGIGRITS---------------CLTSSLSEEVFSSVLELFSPGEGDGSWHGGC 444 (1089)
Q Consensus 382 vE~iI~~ll~~L~d--~dt~vR~saAK~l~rI~~---------------~L~~~~a~~vi~~il~~l~~~~~~~~wHg~~ 444 (1089)
...++..|+..+.+ .+..+|..||-.|.+.+. .++.+....|-+.+++.+... ++.. |+++
T Consensus 33 ~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~~l~~~~~~~ik~~ll~~l~~~-~~~~-~~~~ 110 (876)
T 1qgr_A 33 LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTE-TYRP-SSAS 110 (876)
T ss_dssp HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTTC-CSSS-CHHH
T ss_pred hhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhhhccCCHHHHHHHHHHHHHHhCCC-cHHH-HHHH
Confidence 45667777777766 578999999999999762 356666667778888888654 3344 9999
Q ss_pred HHHHHHHhcCCCCCCcccchHHHHHHhhhhhccccccCCChhhhhhhhHHHHHhhhccCccchhHHHHHHHHHHHHHHhc
Q 001381 445 LALAELARRGLLLPSSLPKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACY 524 (1089)
Q Consensus 445 LaLael~~~~ll~p~~l~~il~~i~~~L~f~~r~~~~svG~~VRDAacfi~WslaR~~~~~~l~~~~~~l~~~Ll~~alf 524 (1089)
.+++++++.-. +....++++|.+...+.-+. --.++|.++..++..++..+.++.+.+++..++..++ ..+-
T Consensus 111 ~~l~~i~~~~~-~~~~w~~ll~~l~~~l~~~~------~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~-~~l~ 182 (876)
T 1qgr_A 111 QCVAGIACAEI-PVNQWPELIPQLVANVTNPN------STEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAII-QGMR 182 (876)
T ss_dssp HHHHHHHHHHG-GGTCCTTHHHHHHHHHHCTT------CCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHH-HHHS
T ss_pred HHHHHHHHhhC-cccccHHHHHHHHHHHhCCC------CCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHH-Hhhc
Confidence 99999998742 22567889999887763210 0257999999999999998877667778877776654 5677
Q ss_pred CC--CchhhHHHHHHHHHHhcccCC-CCCCc---cceecc----cccchhhhHHHHHHHHHHHHhhhc----chH-HHHH
Q 001381 525 DR--EVNCRRAAAAAFQENVGRQGN-YPHGI---DIVNTA----DYFSLSSRVYSYLHVAVFIAQYEG----YLY-PFVD 589 (1089)
Q Consensus 525 D~--e~~iRRaAsAAlQE~vGR~g~-~p~GI---~il~~~----d~~~v~~r~~a~~~va~~va~~~~----Y~~-~li~ 589 (1089)
|+ +..+|.+|..++..++...+. +.... .++... +--.-..|..++.-+...+..++. |.. .+++
T Consensus 183 ~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~ 262 (876)
T 1qgr_A 183 KEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFA 262 (876)
T ss_dssp TTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 76 588999999999998765431 11000 011110 001123455555555555554443 344 5566
Q ss_pred HHHhCccCCCCHHHHHHHHHHHHHHHccCc---------------------hh---hHHHHHHHhccccC-------CCC
Q 001381 590 ELLYNKICHWDKVLRELAAEALSALVKYDP---------------------EY---FANFILEKLTPFTL-------STD 638 (1089)
Q Consensus 590 ~Ll~~~l~h~D~~iR~laa~aL~~L~~~~~---------------------~~---~~~~vlp~Ll~~l~-------~~d 638 (1089)
.++. .+.+.|..+|..|.+.+..++...+ .+ ....++|.+++.+. +.+
T Consensus 263 ~~~~-~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~ 341 (876)
T 1qgr_A 263 ITIE-AMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDD 341 (876)
T ss_dssp HHHH-HHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTC
T ss_pred HHHH-HhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccc
Confidence 5554 4568899999999999988875421 11 12456777766553 356
Q ss_pred hhhHHHHHHHHHHHHHHHhcccccCChhHHHHHHhhhHHHHhhhhccCcchHHHHHHHHHHHHHhhhcCCCC-chhhHHH
Q 001381 639 LCTRHGATLAAGEVVLALCKYDYALPADKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSL-PEKTKRS 717 (1089)
Q Consensus 639 ~~~RHG~lLalaevl~~l~~~~~~~~~~~~~~i~~i~~~~~~~~l~r~~~gelir~a~~~lI~~ls~~~lp~-~~~~~~~ 717 (1089)
+..|+++..+++.+...+. +.....+...+...... ...-+|++++..++.++...-|- -...+..
T Consensus 342 ~~~r~~a~~~l~~l~~~~~-------~~~~~~~l~~l~~~l~~------~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~ 408 (876)
T 1qgr_A 342 WNPCKAAGVCLMLLATCCE-------DDIVPHVLPFIKEHIKN------PDWRYRDAAVMAFGCILEGPEPSQLKPLVIQ 408 (876)
T ss_dssp CCHHHHHHHHHHHHHHHHG-------GGGHHHHHHHHHHHTTC------SSHHHHHHHHHHHHHTSSSSCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHCc-------HhhHHHHHHHHHHHccC------CChHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 8999999999999988764 22333333333332211 23468999999999887422111 0123455
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhcc-CcchhhhhHHHHHHHhCCCChhhhhhHHHHhhccchHh------
Q 001381 718 LLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAA-DSGVVGGISLKYMEQLTDPNPAIRRGSALALGVLPYEL------ 790 (1089)
Q Consensus 718 ~~~~L~~~L~~~~~~V~~aAa~Al~~l~~~y~~~~-~~~~~~~~v~~~~~~L~s~~~~~r~G~a~aLG~lp~~~------ 790 (1089)
....+...+.+++..||.+|+.++..+........ .......+++.+++.+++. +..+..++.+|+.+-...
T Consensus 409 ~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~ 487 (876)
T 1qgr_A 409 AMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADV 487 (876)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhcccc
Confidence 66667777899999999999999999887642211 1223467888888888764 777888888888875432
Q ss_pred -----------hhhhHHHHHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHhhhccccccccccCCcchhhhhhhhHHH
Q 001381 791 -----------LANSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNE 859 (1089)
Q Consensus 791 -----------~~~~~~~i~~~L~~~~~~~~~~~~~d~e~R~~al~sL~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 859 (1089)
+.+++..++..|...+... +..+...|..++++++.++...|.. .......
T Consensus 488 ~~~~~~~~~~~l~~~~~~il~~L~~~l~~~---~~~~~~~r~~~~~~l~~l~~~~~~~---------------~~~~~~~ 549 (876)
T 1qgr_A 488 ADDQEEPATYCLSSSFELIVQKLLETTDRP---DGHQNNLRSSAYESLMEIVKNSAKD---------------CYPAVQK 549 (876)
T ss_dssp TTSCCCCCCCSSTTTHHHHHHHHHHHTTSC---SSCSTTHHHHHHHHHHHHHHTCCST---------------THHHHHH
T ss_pred ccccccccchhhhHhHHHHHHHHHHHHhCc---CcchhhHHHHHHHHHHHHHHHCchh---------------hHHHHHH
Confidence 3466788888888876422 1123568899999999998876642 1245566
Q ss_pred HHHHHHHhcccCC-CCC--CCCcc----hHHHHHHHHHHHHHHHHhhccCCCCCCCCCccccccCCCCccccccccCHHH
Q 001381 860 VMTSLFKALDDYS-VDN--RGDVG----SWVREAAVDGLEICTYILCKRDFVPSPEKPQEVKSELPGNVTAEKTLFDANL 932 (1089)
Q Consensus 860 i~~~Ll~~L~DYT-~D~--RGDVG----SwVR~aa~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 932 (1089)
+++.++..+.+.. ..+ -+|-. .-+|..++.++..++..+ ...-+ ...
T Consensus 550 l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~-------------------------~~~~~-~~~ 603 (876)
T 1qgr_A 550 TTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKV-------------------------QHQDA-LQI 603 (876)
T ss_dssp HHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTS-------------------------CHHHH-HTT
T ss_pred HHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHh-------------------------Chhhh-hHH
Confidence 7777777665430 000 01111 346888888887764111 00111 123
Q ss_pred HHHHHHHHHHHhhhhhH--HHHHHHHHHHHHHhhc
Q 001381 933 ATNLVAGIVKQAVEKMD--KLREAAAKVLRRILYN 965 (1089)
Q Consensus 933 ~~~l~~~llrq~~EkiD--~vR~~A~~~L~~l~~~ 965 (1089)
...++..+++..-.+-+ .+|..|..++..+...
T Consensus 604 ~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~ 638 (876)
T 1qgr_A 604 SDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEV 638 (876)
T ss_dssp HHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHH
Confidence 45666666666555432 6899999998888654
No 10
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.57 E-value=2.5e-11 Score=152.55 Aligned_cols=739 Identities=12% Similarity=0.051 Sum_probs=403.7
Q ss_pred hcCCCchHhHHhhHHHHHHHHHhhcccCCCChhHHhhhhHHHHHhheeeeeeecccceeccCCCCccCHHHHHHHHHhcc
Q 001381 62 EQGQLVEPYLENIVSPLMSIIRSKTIELGADSDEILKIIKPICIIIYTLVTVCGYKAVIKFFPHQVSDLELAVSLLEKCH 141 (1089)
Q Consensus 62 eqP~LLD~~L~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~lY~l~KVRG~K~i~~~fP~ev~~Le~vl~~l~~~~ 141 (1089)
.+|.+-+...+.+-..|++.+.+. +.. . +..+.++..+++.-+. ...+| ..++.++..+...+
T Consensus 79 ~w~~l~~~~~~~ik~~ll~~l~~~----~~~------~-~~~~~~l~~i~~~~~~---~~~w~---~ll~~l~~~l~~~~ 141 (876)
T 1qgr_A 79 RWLAIDANARREVKNYVLHTLGTE----TYR------P-SSASQCVAGIACAEIP---VNQWP---ELIPQLVANVTNPN 141 (876)
T ss_dssp HHHTSCHHHHHHHHHHHHHHTTTC----CSS------S-CHHHHHHHHHHHHHGG---GTCCT---THHHHHHHHHHCTT
T ss_pred hhccCCHHHHHHHHHHHHHHhCCC----cHH------H-HHHHHHHHHHHHhhCc---ccccH---HHHHHHHHHHhCCC
Confidence 357777777777777777766432 111 1 3344444444443221 12233 35566666664210
Q ss_pred ccccccccccCCcchhHHHHHHHHHHHHHhhcCCCCCCCCCcccccccCCCCCChhHHHHHHHHHHHhhhcC---Cchhh
Q 001381 142 DTASVTSLRQESTGEMEAKCVILLWLSILVLVPFDISSVDTSIANNENLGQNEPAPLVMRILGFCKDYLSNA---GPMRT 218 (1089)
Q Consensus 142 ~~~~~~~~~~~~~~~We~~YvlLlWLS~Lvl~PFdL~~id~~~~~~~~~~~~~~~~l~~rIl~l~~~yL~~~---~k~r~ 218 (1089)
..+..|...+.=|..++-. + +... .......++......+..+ ...|.
T Consensus 142 -------------~~~~~r~~al~~l~~l~~~-~-----~~~~----------~~~~~~~ll~~l~~~l~~~~~~~~vr~ 192 (876)
T 1qgr_A 142 -------------STEHMKESTLEAIGYICQD-I-----DPEQ----------LQDKSNEILTAIIQGMRKEEPSNNVKL 192 (876)
T ss_dssp -------------CCHHHHHHHHHHHHHHHHH-S-----CHHH----------HGGGHHHHHHHHHHHHSTTCSCHHHHH
T ss_pred -------------CCHHHHHHHHHHHHHHHHh-c-----CHhh----------HHhHHHHHHHHHHHhhcCCCCCHHHHH
Confidence 0345666555555555421 0 0000 0124566777777777665 46788
Q ss_pred HHHHHHHHHhcC--CChHHH--HHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHhcChhhhhhhhH-HHHHhhhh
Q 001381 219 IAGLLLAKLLTR--PDMPTA--FASFVEWTHEVLSSVTDDVMNHFRLLGVVEALAAIFKAGGRKVLLDVIP-VVWNDAST 293 (1089)
Q Consensus 219 ~Aa~LLsrl~tR--~D~~~~--l~~f~~w~~~~l~~~~~~~~~~~~~~G~L~~l~~ilk~~~~~~l~~~~~-~i~~~~~~ 293 (1089)
.|...+..++.. +.+... ...++....+.+... +. .... +.+..+..+.+... ..+.+++. .+++....
T Consensus 193 ~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~-~~---~vr~-~a~~~l~~l~~~~~-~~~~~~~~~~l~~~~~~ 266 (876)
T 1qgr_A 193 AATNALLNSLEFTKANFDKESERHFIMQVVCEATQCP-DT---RVRV-AALQNLVKIMSLYY-QYMETYMGPALFAITIE 266 (876)
T ss_dssp HHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCS-SH---HHHH-HHHHHHHHHHHHSG-GGCHHHHTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCC-CH---HHHH-HHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHH
Confidence 888888887642 111110 112344333333221 11 1222 56677777766443 34566666 66653332
Q ss_pred hhccCcCCCchhHHHHHHHHHHHhhhcccCCCCccccccccccccccccccccccccccccCccccccccccccCCCCCC
Q 001381 294 MLKSGSAARSPLLRKYLMKLTQRLGLTCLPRCTSAWRYVIRTSSLGENMSSRAAFREIDQCDHSVVDSLKSEQNRNCPED 373 (1089)
Q Consensus 294 l~~~~~~~~~~l~rKl~~Kl~~rlal~~L~pr~~~wrY~rg~rsL~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (1089)
...+. +.-+|......+..++.... .+. +.. ... ..+. ..+..
T Consensus 267 ~~~~~----~~~v~~~al~~l~~l~~~~~--------------~~~--~~~--~~~-------------~~~~--~~~~~ 309 (876)
T 1qgr_A 267 AMKSD----IDEVALQGIEFWSNVCDEEM--------------DLA--IEA--SEA-------------AEQG--RPPEH 309 (876)
T ss_dssp HHTCS----SHHHHHHHHHHHHHHHHHHH--------------HHH--HHH--HHH-------------HHHS--SCCSS
T ss_pred HhcCC----chHHHHHHHHHHHHHHHHHH--------------hHh--hhh--ccc-------------cccC--CCccc
Confidence 22222 34456655555554432110 000 000 000 0000 00000
Q ss_pred CCCC-chHHHHHHHHHHHhhcC-------CCChhHHHHHHHHHHHHHhhhCcchhhhHHHHHHhhcCCCCCCcchHHHHH
Q 001381 374 EGMD-VPDILEEIIEILLSGLR-------DTDTVVRWSAAKGIGRITSCLTSSLSEEVFSSVLELFSPGEGDGSWHGGCL 445 (1089)
Q Consensus 374 ~~~~-v~e~vE~iI~~ll~~L~-------d~dt~vR~saAK~l~rI~~~L~~~~a~~vi~~il~~l~~~~~~~~wHg~~L 445 (1089)
.... ....++.++..++..|. |.+..+|-++++.++.++..++.+..+.+++.+...+++. +....++++.
T Consensus 310 ~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~~-~~~~r~~a~~ 388 (876)
T 1qgr_A 310 TSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNP-DWRYRDAAVM 388 (876)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCS-SHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHccCC-ChHHHHHHHH
Confidence 0111 12346778888887775 3467899999999999999999877788888888877542 2233467999
Q ss_pred HHHHHHhcCC--CCCCcccchHHHHHHhhhhhccccccCCChhhhhhhhHHHHHhhhccCccc-hhHHHHHHHHHHHHHH
Q 001381 446 ALAELARRGL--LLPSSLPKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTD-MRNILEQIAPHLLTVA 522 (1089)
Q Consensus 446 aLael~~~~l--l~p~~l~~il~~i~~~L~f~~r~~~~svG~~VRDAacfi~WslaR~~~~~~-l~~~~~~l~~~Ll~~a 522 (1089)
+++.++..-- ....+++.++|.+..++..+. ..||.+||.++-.++....+.. ..+++..++..|+ ..
T Consensus 389 ~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~--------~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~-~~ 459 (876)
T 1qgr_A 389 AFGCILEGPEPSQLKPLVIQAMPTLIELMKDPS--------VVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLI-EG 459 (876)
T ss_dssp HHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSS--------HHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHH-HH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHH-HH
Confidence 9988774321 011356778888888875432 5699999998888888766532 4577877877765 55
Q ss_pred hcCCCchhhHHHHHHHHHHhcccCCCCCCccceecccccchhhhHHHHHHHHHHHHhhhcchHHHHHHHHhCccCCC---
Q 001381 523 CYDREVNCRRAAAAAFQENVGRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNKICHW--- 599 (1089)
Q Consensus 523 lfD~e~~iRRaAsAAlQE~vGR~g~~p~GI~il~~~d~~~v~~r~~a~~~va~~va~~~~Y~~~li~~Ll~~~l~h~--- 599 (1089)
+-|. ..+|.+|..|++.++...+.-.. .+..+. . ..-..+..|...+++.|+. .+.+.
T Consensus 460 l~~~-~~v~~~a~~al~~l~~~~~~~~~----~~~~~~-~------------~~~~~l~~~~~~il~~L~~-~l~~~~~~ 520 (876)
T 1qgr_A 460 LSAE-PRVASNVCWAFSSLAEAAYEAAD----VADDQE-E------------PATYCLSSSFELIVQKLLE-TTDRPDGH 520 (876)
T ss_dssp TTSC-HHHHHHHHHHHHHHHHHHHHTTS----CTTSCC-C------------CCCCSSTTTHHHHHHHHHH-HTTSCSSC
T ss_pred HcCC-HHHHHHHHHHHHHHHHHhhhccc----cccccc-c------------ccchhhhHhHHHHHHHHHH-HHhCcCcc
Confidence 6664 88999999998877644321000 000000 0 0000134577888888886 33333
Q ss_pred CHHHHHHHHHHHHHHHccCchhh---HHHHHHHhccccC-----------CCC----hhhHHHHHHHHHHHHHHHhcccc
Q 001381 600 DKVLRELAAEALSALVKYDPEYF---ANFILEKLTPFTL-----------STD----LCTRHGATLAAGEVVLALCKYDY 661 (1089)
Q Consensus 600 D~~iR~laa~aL~~L~~~~~~~~---~~~vlp~Ll~~l~-----------~~d----~~~RHG~lLalaevl~~l~~~~~ 661 (1089)
+..+|..+.++++.++...+... ...++|.+++.+. ..| ...|..++-+++.++..+..
T Consensus 521 ~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~--- 597 (876)
T 1qgr_A 521 QNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQH--- 597 (876)
T ss_dssp STTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCH---
T ss_pred hhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhCh---
Confidence 45789999999999998765432 3355566554432 122 23455556666666644320
Q ss_pred cCChhHHHHHHhhhHHHHhhhhccCcch-HHHHHHHHHHHHHhhhcCCCCchhhHHHHHHHHHHhcCCC-cHHHHHHHHH
Q 001381 662 ALPADKQKIVAGIVPGIEKARLYRGKGG-EIMRSAVSRFIECISLSFVSLPEKTKRSLLDTLNENLRHP-NSQIQNAAVK 739 (1089)
Q Consensus 662 ~~~~~~~~~i~~i~~~~~~~~l~r~~~g-elir~a~~~lI~~ls~~~lp~~~~~~~~~~~~L~~~L~~~-~~~V~~aAa~ 739 (1089)
+.....+..+++.+.+ .++...| ..+++.++.++..++...-+--...+..+...+...+.+. +..|+.+|..
T Consensus 598 ---~~~~~~~~~l~~~l~~--~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~ 672 (876)
T 1qgr_A 598 ---QDALQISDVVMASLLR--MFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVG 672 (876)
T ss_dssp ---HHHHTTHHHHHHHHHH--HC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHH
T ss_pred ---hhhhHHHHHHHHHHHH--HHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 1111112222333221 1222112 2568888888887764211101123455666666666665 8899999999
Q ss_pred HHHHHHHHhhhccCcchhhhhHHHHHHHhCC--CChhhhhhHHHHhhccchHh---hhhhHHHHHHHHhhhccccCCCCC
Q 001381 740 ALKPFVQTYMVAADSGVVGGISLKYMEQLTD--PNPAIRRGSALALGVLPYEL---LANSWRDVLLKLCSCCLIEENPED 814 (1089)
Q Consensus 740 Al~~l~~~y~~~~~~~~~~~~v~~~~~~L~s--~~~~~r~G~a~aLG~lp~~~---~~~~~~~i~~~L~~~~~~~~~~~~ 814 (1089)
++..+.......- ....+.+++.+++.+++ .+...+..++.++|.+-..+ +.+.+..++..|......+...++
T Consensus 673 ~l~~l~~~~~~~~-~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~~~d 751 (876)
T 1qgr_A 673 LVGDLCRALQSNI-IPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSD 751 (876)
T ss_dssp HHHHHHHHHGGGG-HHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTC
T ss_pred HHHHHHHHHHHhh-hhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhccCCCCC
Confidence 9998887642110 01125677777777765 35667888888888774322 334566777776665432211011
Q ss_pred C-----CHHHHHHHHHHHHHHHhhhccccccccccCCcchhhhhhhhHHHHHHHHHHhcccCCCCCCCCcchHHHHHHHH
Q 001381 815 R-----DTEARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVD 889 (1089)
Q Consensus 815 ~-----d~e~R~~al~sL~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~L~DYT~D~RGDVGSwVR~aa~~ 889 (1089)
. ..+.|..+++++..++..+|..... ..+ ......+++..+++.+...++|-+ .-.-||.+|+.
T Consensus 752 ~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~----~~~-~~~~~~~~~~~i~~~l~~~~~~~~------~~~~vr~~a~~ 820 (876)
T 1qgr_A 752 YDMVDYLNELRESCLEAYTGIVQGLKGDQEN----VHP-DVMLVQPRVEFILSFIDHIAGDED------HTDGVVACAAG 820 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSSSS----CCG-GGGGSGGGHHHHHHHHHHHHTCSC------CCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHccCccc----ccc-hHHHHHHHHHHHHHHHHHHhcCCC------CCHHHHHHHHH
Confidence 1 1268899999999998877642000 000 001123556777766655554421 12359999999
Q ss_pred HHHHHHHHhhccCCCCCCCCCccccccCCCCcc-ccccccCHHHHHHHHHHHHH-HhhhhhHHHHHHHHHHHHHHhh
Q 001381 890 GLEICTYILCKRDFVPSPEKPQEVKSELPGNVT-AEKTLFDANLATNLVAGIVK-QAVEKMDKLREAAAKVLRRILY 964 (1089)
Q Consensus 890 ~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~llr-q~~EkiD~vR~~A~~~L~~l~~ 964 (1089)
++..+...+. . ....++ ...++..+++ -..++-..+|..|..++-.+.+
T Consensus 821 ~l~~l~~~~~----------------------~~~~~~~~----~~~~i~~ll~~~l~~~~~~~r~~a~~a~~~~~~ 871 (876)
T 1qgr_A 821 LIGDLCTAFG----------------------KDVLKLVE----ARPMIHELLTEGRRSKTNKAKTLARWATKELRK 871 (876)
T ss_dssp HHHHHHHHHC----------------------THHHHHHH----TSHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC----------------------cHHHHHHH----hcHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHH
Confidence 9998863331 1 111111 2334455555 3345668899999998887754
No 11
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.26 E-value=2.2e-09 Score=124.26 Aligned_cols=388 Identities=14% Similarity=0.094 Sum_probs=250.8
Q ss_pred HHHHHHHHhhcCC--CChhHHHHHHHHHHHHH---------------hhhCcchhhhHHHHHHhhcCCCCCCcchHHHHH
Q 001381 383 EEIIEILLSGLRD--TDTVVRWSAAKGIGRIT---------------SCLTSSLSEEVFSSVLELFSPGEGDGSWHGGCL 445 (1089)
Q Consensus 383 E~iI~~ll~~L~d--~dt~vR~saAK~l~rI~---------------~~L~~~~a~~vi~~il~~l~~~~~~~~wHg~~L 445 (1089)
.+.+..|+.-+.+ .+..+|..||-.|.+.+ ..++.+...+|-+.+++.+.... +.. +..+-
T Consensus 34 ~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~-~~v-~~~~~ 111 (462)
T 1ibr_B 34 PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTET-YRP-SSASQ 111 (462)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCC-SSS-CSHHH
T ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCC-chh-hHHHH
Confidence 3444555555544 47899999999999987 34677777788888888886543 344 88999
Q ss_pred HHHHHHhcCCCCC-CcccchHHHHHHhhhhhccccccCCChhhhhhhhHHHHHhhhccCccchhHHHHHHHHHHHHHHhc
Q 001381 446 ALAELARRGLLLP-SSLPKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACY 524 (1089)
Q Consensus 446 aLael~~~~ll~p-~~l~~il~~i~~~L~f~~r~~~~svG~~VRDAacfi~WslaR~~~~~~l~~~~~~l~~~Ll~~alf 524 (1089)
+++++++... | ...++++|.+...+.-+. ....+|.+|..++..+++.+.++.+.+++..++..+ ...+-
T Consensus 112 ~i~~ia~~~~--~~~~w~~ll~~L~~~l~~~~------~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l-~~~l~ 182 (462)
T 1ibr_B 112 CVAGIACAEI--PVNQWPELIPQLVANVTNPN------STEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAI-IQGMR 182 (462)
T ss_dssp HHHHHHHHHG--GGTCCTTHHHHHHHHHHCTT------CCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHH-HHHHS
T ss_pred HHHHHHHHhc--cccccHHHHHHHHHHhccCC------CCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHH-HHHhC
Confidence 9999998753 3 356888888877763210 025799999999999999887777888888877665 46777
Q ss_pred CC--CchhhHHHHHHHHHHhcccCCCCCCccceecccccchhhhHHHHHHHHHHHHhhhcchHHHHHHHHhCccCCCCHH
Q 001381 525 DR--EVNCRRAAAAAFQENVGRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNKICHWDKV 602 (1089)
Q Consensus 525 D~--e~~iRRaAsAAlQE~vGR~g~~p~GI~il~~~d~~~v~~r~~a~~~va~~va~~~~Y~~~li~~Ll~~~l~h~D~~ 602 (1089)
|. +..+|++|..++..++.-.+ +-+.. ..+ ...+++.|.. .+.+.|..
T Consensus 183 ~~~~~~~vr~~a~~~l~~~~~~~~------------~~~~~--------------~~~---~~~l~~~l~~-~~~~~~~~ 232 (462)
T 1ibr_B 183 KEEPSNNVKLAATNALLNSLEFTK------------ANFDK--------------ESE---RHFIMQVVCE-ATQCPDTR 232 (462)
T ss_dssp TTCCCHHHHHHHHHHHHHHTTTTH------------HHHTS--------------HHH---HHHHHHHHHH-HTTCSSHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHH------------Hhhhh--------------hHH---HHHHHHHHHH-hcCCCCHH
Confidence 77 68999999999888752110 00000 001 1123444433 45688999
Q ss_pred HHHHHHHHHHHHHccCchhh---HH-HHHHHhccccCCCChhhHHHHHHHHHHHHHHHhcccccCChhHHHHHHhhhHHH
Q 001381 603 LRELAAEALSALVKYDPEYF---AN-FILEKLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPADKQKIVAGIVPGI 678 (1089)
Q Consensus 603 iR~laa~aL~~L~~~~~~~~---~~-~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~l~~~~~~~~~~~~~~i~~i~~~~ 678 (1089)
+|+.++++|+.++...++.+ .. .++|.++..+.+.+..+|.-++-.++.+...... + ...
T Consensus 233 vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~------------~----~~~ 296 (462)
T 1ibr_B 233 VRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMD------------L----AIE 296 (462)
T ss_dssp HHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHH------------H----HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHH------------H----HHh
Confidence 99999999999998777543 23 5667666666777777887766666665543210 0 000
Q ss_pred Hhh----hhcc-CcchHHHHHHHHHHHHHhhhcCCCCchhhHHHHHHHHHHhcC-------CCcHHHHHHHHHHHHHHHH
Q 001381 679 EKA----RLYR-GKGGEIMRSAVSRFIECISLSFVSLPEKTKRSLLDTLNENLR-------HPNSQIQNAAVKALKPFVQ 746 (1089)
Q Consensus 679 ~~~----~l~r-~~~gelir~a~~~lI~~ls~~~lp~~~~~~~~~~~~L~~~L~-------~~~~~V~~aAa~Al~~l~~ 746 (1089)
.+. +.-. .....++..... .+...+...+. ..+..++.+|+.++..+..
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~-------------------~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~ 357 (462)
T 1ibr_B 297 ASEAAEQGRPPEHTSKFYAKGALQ-------------------YLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLAT 357 (462)
T ss_dssp HCCTTCSSSCSSCCCCCHHHHHHH-------------------HHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHH
T ss_pred cccccccCCCccchhHHHHHHHhh-------------------hccHHHHHHHHhcccccccccchHHHHHHHHHHHHHH
Confidence 000 0000 000111111111 11111222222 2344789999999998887
Q ss_pred HhhhccCcchhhhhHHHHHHHhCCCChhhhhhHHHHhhccchHh----hhhhHHHHHHHHhhhccccCCCCCCCHHHHHH
Q 001381 747 TYMVAADSGVVGGISLKYMEQLTDPNPAIRRGSALALGVLPYEL----LANSWRDVLLKLCSCCLIEENPEDRDTEARVN 822 (1089)
Q Consensus 747 ~y~~~~~~~~~~~~v~~~~~~L~s~~~~~r~G~a~aLG~lp~~~----~~~~~~~i~~~L~~~~~~~~~~~~~d~e~R~~ 822 (1089)
.+ +......+++.+.+.+++.+...|.++..++|.+-... ..+....++..|+..+. +.+...|..
T Consensus 358 ~~----~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~------d~~~~Vr~~ 427 (462)
T 1ibr_B 358 CC----EDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMK------DPSVVVRDT 427 (462)
T ss_dssp HT----TTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGG------CSCHHHHHH
T ss_pred hc----cHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhc------CCCHHHHHH
Confidence 64 12334566777777788889999999999999986432 23445667777877763 456899999
Q ss_pred HHHHHHHHHhhhccccccccccCCcchhhhhhhhHHHHHHHHHHhcc
Q 001381 823 AVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALD 869 (1089)
Q Consensus 823 al~sL~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~L~ 869 (1089)
|..+|++++...+... .....+..+++.|+.+|+
T Consensus 428 a~~~l~~~~~~~~~~~-------------~~~~~l~~ll~~Ll~~L~ 461 (462)
T 1ibr_B 428 AAWTVGRICELLPEAA-------------INDVYLAPLLQCLIEGLS 461 (462)
T ss_dssp HHHHHHHHHHHGGGGC-------------CSTTTHHHHHHHHHCC--
T ss_pred HHHHHHHHHHhccccc-------------ccHHHHHHHHHHHHHHhc
Confidence 9999999998765310 012567888999888875
No 12
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.19 E-value=1e-09 Score=127.10 Aligned_cols=316 Identities=12% Similarity=0.044 Sum_probs=212.6
Q ss_pred HHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhCc-chhhhHHHHHHhhcCCCC-CCcchHHHHHHHHHHHhcC--C
Q 001381 380 DILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTS-SLSEEVFSSVLELFSPGE-GDGSWHGGCLALAELARRG--L 455 (1089)
Q Consensus 380 e~vE~iI~~ll~~L~d~dt~vR~saAK~l~rI~~~L~~-~~a~~vi~~il~~l~~~~-~~~~wHg~~LaLael~~~~--l 455 (1089)
+..+.|-+.++..|.+.+..+ -.+|..++.|+....+ ..-.++++.+++.+++.. ++...++++.+|+.++..- -
T Consensus 86 ~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~ 164 (462)
T 1ibr_B 86 NARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPE 164 (462)
T ss_dssp HHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGG
T ss_pred HHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCch
Confidence 567888899999999999999 9999999999998643 345789999999886643 5567899999999998753 2
Q ss_pred CCCCcccchHHHHHHhhhhhccccccCCChhhhhhhhHHHHHhhhccCccchhH-HHHHHHHHHHHHHhcCCCchhhHHH
Q 001381 456 LLPSSLPKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRN-ILEQIAPHLLTVACYDREVNCRRAA 534 (1089)
Q Consensus 456 l~p~~l~~il~~i~~~L~f~~r~~~~svG~~VRDAacfi~WslaR~~~~~~l~~-~~~~l~~~Ll~~alfD~e~~iRRaA 534 (1089)
.+...++.+++.+.+++..+.. ...||.+|+-+++++...... .+.. .....+...+...+-|++..+|+++
T Consensus 165 ~~~~~~~~ll~~l~~~l~~~~~------~~~vr~~a~~~l~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~ 237 (462)
T 1ibr_B 165 QLQDKSNEILTAIIQGMRKEEP------SNNVKLAATNALLNSLEFTKA-NFDKESERHFIMQVVCEATQCPDTRVRVAA 237 (462)
T ss_dssp GTGGGHHHHHHHHHHHHSTTCC------CHHHHHHHHHHHHHHTTTTHH-HHTSHHHHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred hhHhHHHHHHHHHHHHhCCCCC------CHHHHHHHHHHHHHHHHHHHH-hhhhhHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 3345567788888887754420 256999998887776532221 1111 1122233444566788999999999
Q ss_pred HHHHHHHhcccCCCCCCccceecccccchhhhHHHHHHHHHHHHhhhcchH-HHHHHHHhCccCCCCHHHHHHHHHHHHH
Q 001381 535 AAAFQENVGRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLY-PFVDELLYNKICHWDKVLRELAAEALSA 613 (1089)
Q Consensus 535 sAAlQE~vGR~g~~p~GI~il~~~d~~~v~~r~~a~~~va~~va~~~~Y~~-~li~~Ll~~~l~h~D~~iR~laa~aL~~ 613 (1089)
..+|.+++++++.. +..|.. .+++.++. .+.+.+..+|..|...+..
T Consensus 238 ~~~l~~l~~~~~~~-------------------------------~~~~~~~~l~~~~~~-~~~~~~~~v~~~a~~~l~~ 285 (462)
T 1ibr_B 238 LQNLVKIMSLYYQY-------------------------------METYMGPALFAITIE-AMKSDIDEVALQGIEFWSN 285 (462)
T ss_dssp HHHHHHHHHHCGGG-------------------------------CTTTTTTTHHHHHHH-HHHCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------------------------------HHHHHHHHHHHHHHH-HHcCCchHHHHHHHHHHHH
Confidence 99999998876421 011222 23333222 2346788888888888888
Q ss_pred HHccC-------------------c--hh---hHHHHHHHhccccC-------CCChhhHHHHHHHHHHHHHHHhccccc
Q 001381 614 LVKYD-------------------P--EY---FANFILEKLTPFTL-------STDLCTRHGATLAAGEVVLALCKYDYA 662 (1089)
Q Consensus 614 L~~~~-------------------~--~~---~~~~vlp~Ll~~l~-------~~d~~~RHG~lLalaevl~~l~~~~~~ 662 (1089)
++... + .+ ....++|.+++.+. +.++..|+++.-+++.+...+.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~----- 360 (462)
T 1ibr_B 286 VCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE----- 360 (462)
T ss_dssp HHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc-----
Confidence 87541 1 11 12567777766553 2457899999999999887764
Q ss_pred CChhHHHHHHhhhHHHHhhhhccCcchHHHHHHHHHHHHHhhhcCCCC-chhhHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 001381 663 LPADKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSL-PEKTKRSLLDTLNENLRHPNSQIQNAAVKAL 741 (1089)
Q Consensus 663 ~~~~~~~~i~~i~~~~~~~~l~r~~~gelir~a~~~lI~~ls~~~lp~-~~~~~~~~~~~L~~~L~~~~~~V~~aAa~Al 741 (1089)
+.....+...+....+. ....+|++++..++.++...-+- -...+......+...|.+++..||.+|+.++
T Consensus 361 --~~~~~~~~~~l~~~l~~------~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l 432 (462)
T 1ibr_B 361 --DDIVPHVLPFIKEHIKN------PDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTV 432 (462)
T ss_dssp --TTHHHHHHHHHHHHTTC------SSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHhcC------CChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 23333444444333321 24568999999999988532111 1123345666777788999999999999999
Q ss_pred HHHHHHh
Q 001381 742 KPFVQTY 748 (1089)
Q Consensus 742 ~~l~~~y 748 (1089)
..+....
T Consensus 433 ~~~~~~~ 439 (462)
T 1ibr_B 433 GRICELL 439 (462)
T ss_dssp HHHHHHG
T ss_pred HHHHHhc
Confidence 9998765
No 13
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.12 E-value=2.6e-08 Score=121.24 Aligned_cols=429 Identities=13% Similarity=0.126 Sum_probs=247.3
Q ss_pred HHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhCcchhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHHhcCCCCCC
Q 001381 380 DILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSLSEEVFSSVLELFSPGEGDGSWHGGCLALAELARRGLLLPS 459 (1089)
Q Consensus 380 e~vE~iI~~ll~~L~d~dt~vR~saAK~l~rI~~~L~~~~a~~vi~~il~~l~~~~~~~~wHg~~LaLael~~~~ll~p~ 459 (1089)
|.+.-+++.+...|.|++..+|-.|.+++++|. .+++.+.+++.+...+.+.
T Consensus 82 e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~---~~~~~~~l~~~l~~~L~d~------------------------- 133 (591)
T 2vgl_B 82 DMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIR---VDKITEYLCEPLRKCLKDE------------------------- 133 (591)
T ss_dssp HHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCC---SGGGHHHHHHHHHHHSSCS-------------------------
T ss_pred hHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHHcCCC-------------------------
Confidence 445555666666666666666666666666654 4444555555454444321
Q ss_pred cccchHHHHHHhhhhhccccccCCChhhhhhhhHHHHHhhhccCccchhHHHHHHHHHHHHHHhcCCCchhhHHHHHHHH
Q 001381 460 SLPKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAAAAAFQ 539 (1089)
Q Consensus 460 ~l~~il~~i~~~L~f~~r~~~~svG~~VRDAacfi~WslaR~~~~~~l~~~~~~l~~~Ll~~alfD~e~~iRRaAsAAlQ 539 (1089)
-..||-+|+..+..+++.+ |+.+.. .-+.+.+...+-|++..||.+|..||.
T Consensus 134 ------------------------~~~VRk~A~~al~~i~~~~-p~~~~~---~~~~~~l~~lL~d~d~~V~~~A~~aL~ 185 (591)
T 2vgl_B 134 ------------------------DPYVRKTAAVCVAKLHDIN-AQMVED---QGFLDSLRDLIADSNPMVVANAVAALS 185 (591)
T ss_dssp ------------------------CHHHHHHHHHHHHHHHHSS-CCCHHH---HHHHHHHHHTTSCSCHHHHHHHHHHHH
T ss_pred ------------------------ChHHHHHHHHHHHHHHhhC-hhhccc---ccHHHHHHHHhCCCChhHHHHHHHHHH
Confidence 1457777777776666643 333321 123355677888999999999999999
Q ss_pred HHhcccCCCCCCccceecccccch-hh--hHHHHHHH--HHHHHhhh----cchHHHHHHHHhCccCCCCHHHHHHHHHH
Q 001381 540 ENVGRQGNYPHGIDIVNTADYFSL-SS--RVYSYLHV--AVFIAQYE----GYLYPFVDELLYNKICHWDKVLRELAAEA 610 (1089)
Q Consensus 540 E~vGR~g~~p~GI~il~~~d~~~v-~~--r~~a~~~v--a~~va~~~----~Y~~~li~~Ll~~~l~h~D~~iR~laa~a 610 (1089)
|+....... .-+++... -+..+ .. ....+..+ -..++.+. .-...+++.+.. .+.|.|..++.-|+++
T Consensus 186 ~i~~~~~~~-~~~~l~~~-~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~-~l~~~~~~V~~ea~~~ 262 (591)
T 2vgl_B 186 EISESHPNS-NLLDLNPQ-NINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTP-RLSHANSAVVLSAVKV 262 (591)
T ss_dssp HHTTSCCSC-CSCCCHHH-HHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTT-CSCSSTTHHHHHHHHH
T ss_pred HHHhhCCCc-cchhccHH-HHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHH-HHcCCChHHHHHHHHH
Confidence 975443210 00111000 00000 00 00111111 11223331 223456776664 6889999999999999
Q ss_pred HHHHHcc---CchhhH---HHHHHHhccccCCCChhhHHHHHHHHHHHHHHHhcccccCChhHHHHHHhhhHHHHhhhhc
Q 001381 611 LSALVKY---DPEYFA---NFILEKLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPADKQKIVAGIVPGIEKARLY 684 (1089)
Q Consensus 611 L~~L~~~---~~~~~~---~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~l~~~~~~~~~~~~~~i~~i~~~~~~~~l~ 684 (1089)
+..+... +++.+. ..+.+.|. .+.+.|.++|.=++-+++.+...-.+. ....+.. ++
T Consensus 263 i~~l~~~~~~~~~~~~~~~~~~~~~L~-~L~~~d~~vr~~aL~~l~~i~~~~p~~-------~~~~~~~---------~~ 325 (591)
T 2vgl_B 263 LMKFLELLPKDSDYYNMLLKKLAPPLV-TLLSGEPEVQYVALRNINLIVQKRPEI-------LKQEIKV---------FF 325 (591)
T ss_dssp HHHSCCSCCBTTBSHHHHHHHTHHHHH-HHTTSCHHHHHHHHHHHHHHHHHCCST-------TTTCTTT---------TS
T ss_pred HHHHhhccCCCHHHHHHHHHHHHHHHH-HHhcCCccHHHHHHHHHHHHHHhChHH-------HHHHHHh---------he
Confidence 9999753 343322 23444444 344578899999999998887642211 0000111 11
Q ss_pred cC-cchHHHHHHHHHHHHHhhhcCCCCchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCcchhhhhHHH
Q 001381 685 RG-KGGEIMRSAVSRFIECISLSFVSLPEKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLK 763 (1089)
Q Consensus 685 r~-~~gelir~a~~~lI~~ls~~~lp~~~~~~~~~~~~L~~~L~~~~~~V~~aAa~Al~~l~~~y~~~~~~~~~~~~v~~ 763 (1089)
.. ..+.-+|..++.++..++... .+.....-|...+.+.+.+++..++.++..+...|- .....+++.
T Consensus 326 ~~~~d~~~Ir~~al~~L~~l~~~~------nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~-----~~~~~~v~~ 394 (591)
T 2vgl_B 326 VKYNDPIYVKLEKLDIMIRLASQA------NIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVE-----QSAERCVST 394 (591)
T ss_dssp CCTTSCHHHHHHHHHHHHHTCCSS------THHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCH-----HHHHHHHHH
T ss_pred eccCChHHHHHHHHHHHHHHCChh------hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCh-----hHHHHHHHH
Confidence 10 113567777788887766421 233445556667788899999999999998876552 123577888
Q ss_pred HHHHhCCCChhhhhhHHHHhhccchHhhhhhHHHHHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHhhhccccccccc
Q 001381 764 YMEQLTDPNPAIRRGSALALGVLPYELLANSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQSQENSLI 843 (1089)
Q Consensus 764 ~~~~L~s~~~~~r~G~a~aLG~lp~~~~~~~~~~i~~~L~~~~~~~~~~~~~d~e~R~~al~sL~~i~~~~g~~~~~~~~ 843 (1089)
+++.+++.....+.-.+.+++.+-... ......++..|+..+. +..+.+.|..++..|++.+..+
T Consensus 395 Ll~ll~~~~~~v~~e~i~~l~~ii~~~-p~~~~~~v~~L~~~l~-----~~~~~~~~~~~~wilGey~~~~--------- 459 (591)
T 2vgl_B 395 LLDLIQTKVNYVVQEAIVVIRDIFRKY-PNKYESIIATLCENLD-----SLDEPDARAAMIWIVGEYAERI--------- 459 (591)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHHHS-CSSCCTTHHHHHHTTT-----TCCSHHHHHHHHHHHHTTCTTC---------
T ss_pred HHHHHcccchHHHHHHHHHHHHHHHHC-cchHHHHHHHHHHHHH-----hccCHHHHHHHHHHHHcccccc---------
Confidence 888887666566665566665542211 1111234555655542 3456788999998888753221
Q ss_pred cCCcchhhhhhhhHHHHHHHHHHhcccCCCCCCCCcchHHHHHHHHHHHHHHHHhhccCCCCCCCCCccccccCCCCccc
Q 001381 844 HSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEICTYILCKRDFVPSPEKPQEVKSELPGNVTA 923 (1089)
Q Consensus 844 ~~~~~~~~~~~~~~~~i~~~Ll~~L~DYT~D~RGDVGSwVR~aa~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 923 (1089)
.....+++.+++.+.|. .+.||.+++.++..+. .+
T Consensus 460 -----------~~~~~~l~~l~~~~~~~--------~~~vr~~~l~a~~Kl~---~~----------------------- 494 (591)
T 2vgl_B 460 -----------DNADELLESFLEGFHDE--------STQVQLTLLTAIVKLF---LK----------------------- 494 (591)
T ss_dssp -----------TTHHHHHHHHSTTCSSS--------CHHHHHHHHHHHHHHH---TT-----------------------
T ss_pred -----------cCHHHHHHHHHHhhccC--------CHHHHHHHHHHHHHHH---hc-----------------------
Confidence 11345666666555432 5679999999997764 21
Q ss_pred cccccCHHHHHHHHHHHHHHhh-hhhH-HHHHHHHHHHH
Q 001381 924 EKTLFDANLATNLVAGIVKQAV-EKMD-KLREAAAKVLR 960 (1089)
Q Consensus 924 ~~~~~~~~~~~~l~~~llrq~~-EkiD-~vR~~A~~~L~ 960 (1089)
.+ +...+.+..+++.+. +-.| .||.+|...+.
T Consensus 495 ~p-----~~~~~~i~~ll~~~~~d~~d~evrdRA~~y~~ 528 (591)
T 2vgl_B 495 KP-----SETQELVQQVLSLATQDSDNPDLRDRGYIYWR 528 (591)
T ss_dssp CC-----STTHHHHHHHHHHHHTTCCCHHHHHHHHHHHT
T ss_pred Cc-----hHHHHHHHHHHHHhhhcCCChHHHHHHHHHHH
Confidence 11 112355666777764 3355 89999987654
No 14
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.97 E-value=3.9e-06 Score=102.06 Aligned_cols=376 Identities=15% Similarity=0.109 Sum_probs=228.7
Q ss_pred hHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhCcchhh--hHHHHHHhhcCCCCCCcchHHHHHHHHHHHhcCCC
Q 001381 379 PDILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSLSE--EVFSSVLELFSPGEGDGSWHGGCLALAELARRGLL 456 (1089)
Q Consensus 379 ~e~vE~iI~~ll~~L~d~dt~vR~saAK~l~rI~~~L~~~~a~--~vi~~il~~l~~~~~~~~wHg~~LaLael~~~~ll 456 (1089)
++..+.+++.+...|.|+++.||..||.++++|...- ++... .+++.+.+.+++. +....-+++.+|.+++...--
T Consensus 116 ~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~-p~~~~~~~~~~~l~~lL~d~-d~~V~~~A~~aL~~i~~~~~~ 193 (591)
T 2vgl_B 116 DKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDIN-AQMVEDQGFLDSLRDLIADS-NPMVVANAVAALSEISESHPN 193 (591)
T ss_dssp GGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSS-CCCHHHHHHHHHHHHTTSCS-CHHHHHHHHHHHHHHTTSCCS
T ss_pred HHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhC-hhhcccccHHHHHHHHhCCC-ChhHHHHHHHHHHHHHhhCCC
Confidence 4778889999999999999999999999999999854 44444 5888888888642 333345577788888765420
Q ss_pred C--CCcccchHHHHHHhhh---------------h-------------hc-cccccCCChhhhhhhhHHHHHhhhcc--C
Q 001381 457 L--PSSLPKVVPVIVKALH---------------Y-------------DI-RRGSHSVGSHVRDAAAYVCWAFGRAY--C 503 (1089)
Q Consensus 457 ~--p~~l~~il~~i~~~L~---------------f-------------~~-r~~~~svG~~VRDAacfi~WslaR~~--~ 503 (1089)
. -...+..++.+++.+. . +. ...-.+.+..|+-+|+-.+..+.... +
T Consensus 194 ~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~ 273 (591)
T 2vgl_B 194 SNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKD 273 (591)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBT
T ss_pred ccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCC
Confidence 0 0111122222222111 0 00 00012346778888888877777654 3
Q ss_pred ccchhHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHhcccCC-CCCCccc-eecccccchhhhHHHHHHHHHHHHhhh
Q 001381 504 HTDMRNILEQIAPHLLTVACYDREVNCRRAAAAAFQENVGRQGN-YPHGIDI-VNTADYFSLSSRVYSYLHVAVFIAQYE 581 (1089)
Q Consensus 504 ~~~l~~~~~~l~~~Ll~~alfD~e~~iRRaAsAAlQE~vGR~g~-~p~GI~i-l~~~d~~~v~~r~~a~~~va~~va~~~ 581 (1089)
++.+...+..+...|+ .+.+++.|+|..|..++..++.++.. +...+.. +...+ -....|+.+. ++...+++ +
T Consensus 274 ~~~~~~~~~~~~~~L~--~L~~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~-d~~~Ir~~al-~~L~~l~~-~ 348 (591)
T 2vgl_B 274 SDYYNMLLKKLAPPLV--TLLSGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYN-DPIYVKLEKL-DIMIRLAS-Q 348 (591)
T ss_dssp TBSHHHHHHHTHHHHH--HHTTSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTT-SCHHHHHHHH-HHHHHTCC-S
T ss_pred HHHHHHHHHHHHHHHH--HHhcCCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccC-ChHHHHHHHH-HHHHHHCC-h
Confidence 4445555566666665 34578999999999999999887643 2211211 11100 0133455553 32222332 1
Q ss_pred cchHHHHHHHHhCccCCCCHHHHHHHHHHHHHHHccCchhhHHHHHHHhccccCCCChhhHHHHHHHHHHHHHHHhcccc
Q 001381 582 GYLYPFVDELLYNKICHWDKVLRELAAEALSALVKYDPEYFANFILEKLTPFTLSTDLCTRHGATLAAGEVVLALCKYDY 661 (1089)
Q Consensus 582 ~Y~~~li~~Ll~~~l~h~D~~iR~laa~aL~~L~~~~~~~~~~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~l~~~~~ 661 (1089)
.-...+++.|.. .+.+.|.++|+.++++++.++...|.. ...+++.+++.+......++--++.++.+++......
T Consensus 349 ~nv~~iv~~L~~-~l~~~d~~~r~~~v~aI~~la~~~~~~-~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~-- 424 (591)
T 2vgl_B 349 ANIAQVLAELKE-YATEVDVDFVRKAVRAIGRCAIKVEQS-AERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNK-- 424 (591)
T ss_dssp STHHHHHHHHHH-HTTSSCHHHHHHHHHHHHHHHTTCHHH-HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSS--
T ss_pred hhHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHHHHhChhH-HHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcch--
Confidence 234568888876 567889999999999999999987643 4567788888887777777777788888887654321
Q ss_pred cCChhHHHHHHhhhHHHHhhhhccCcchHHHHHHHHHHHHHhhhcCCCCchhhHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 001381 662 ALPADKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLPEKTKRSLLDTLNENLRHPNSQIQNAAVKAL 741 (1089)
Q Consensus 662 ~~~~~~~~~i~~i~~~~~~~~l~r~~~gelir~a~~~lI~~ls~~~lp~~~~~~~~~~~~L~~~L~~~~~~V~~aAa~Al 741 (1089)
-+..+..+...++. ......+.+++-.++..+. .++- ....++.+...+...+..||.++..|+
T Consensus 425 --~~~~v~~L~~~l~~---------~~~~~~~~~~~wilGey~~-~~~~----~~~~l~~l~~~~~~~~~~vr~~~l~a~ 488 (591)
T 2vgl_B 425 --YESIIATLCENLDS---------LDEPDARAAMIWIVGEYAE-RIDN----ADELLESFLEGFHDESTQVQLTLLTAI 488 (591)
T ss_dssp --CCTTHHHHHHTTTT---------CCSHHHHHHHHHHHHTTCT-TCTT----HHHHHHHHSTTCSSSCHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHh---------ccCHHHHHHHHHHHHcccc-cccC----HHHHHHHHHHhhccCCHHHHHHHHHHH
Confidence 12222332222221 1123457788888876653 2221 123444455556677889999888888
Q ss_pred HHHHHHhhhccCcchhhhhHHHHHHHh-C-CCChhhhhhHHHHhhcc
Q 001381 742 KPFVQTYMVAADSGVVGGISLKYMEQL-T-DPNPAIRRGSALALGVL 786 (1089)
Q Consensus 742 ~~l~~~y~~~~~~~~~~~~v~~~~~~L-~-s~~~~~r~G~a~aLG~l 786 (1089)
..++..+ +. .....++.+++.. . +.++..|.-+...++.+
T Consensus 489 ~Kl~~~~----p~-~~~~~i~~ll~~~~~d~~d~evrdRA~~y~~ll 530 (591)
T 2vgl_B 489 VKLFLKK----PS-ETQELVQQVLSLATQDSDNPDLRDRGYIYWRLL 530 (591)
T ss_dssp HHHHTTC----CS-TTHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTT
T ss_pred HHHHhcC----ch-HHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHH
Confidence 7766532 21 1235666666664 3 46766766555555544
No 15
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=98.89 E-value=2.1e-07 Score=111.20 Aligned_cols=402 Identities=15% Similarity=0.111 Sum_probs=237.4
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhCcc----h-hhhHHHHHHhhcCCCCCCcchHHHHHHHHHHHhcCCC
Q 001381 382 LEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSS----L-SEEVFSSVLELFSPGEGDGSWHGGCLALAELARRGLL 456 (1089)
Q Consensus 382 vE~iI~~ll~~L~d~dt~vR~saAK~l~rI~~~L~~~----~-a~~vi~~il~~l~~~~~~~~wHg~~LaLael~~~~ll 456 (1089)
+...|..|+..|.+.+..+|..|++.|.++...-+.. + ...+++.+++.+....++..-..++-+|+.++...--
T Consensus 85 ~~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~ 164 (530)
T 1wa5_B 85 LQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA 164 (530)
T ss_dssp --CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence 5556888888899999999999999999998764222 2 2468899999887653333445577788887763210
Q ss_pred CCCcc--cchHHHHHHhhhhhccccccCCChhhhhhhhHHHHHhhhccCccchhH-HHHHHHHHHHHHHhcCCCchhhHH
Q 001381 457 LPSSL--PKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRN-ILEQIAPHLLTVACYDREVNCRRA 533 (1089)
Q Consensus 457 ~p~~l--~~il~~i~~~L~f~~r~~~~svG~~VRDAacfi~WslaR~~~~~~l~~-~~~~l~~~Ll~~alfD~e~~iRRa 533 (1089)
....+ ..++|.+.+.|.-. -..||..|+.++|.++..... ... .+..=+...++..+.+.+..+|+.
T Consensus 165 ~~~~~~~~g~i~~Lv~lL~~~--------~~~vr~~A~~aL~~l~~~~~~--~~~~~~~~~~l~~L~~ll~~~~~~v~~~ 234 (530)
T 1wa5_B 165 QTKVVVDADAVPLFIQLLYTG--------SVEVKEQAIWALGNVAGDSTD--YRDYVLQCNAMEPILGLFNSNKPSLIRT 234 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHC--------CHHHHHHHHHHHHHHHTTCHH--HHHHHHHTTCHHHHHHGGGSCCHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCC--------CHHHHHHHHHHHHHHhCCCcc--chHHHHHcCcHHHHHHHhccCCHHHHHH
Confidence 00011 34677777776432 267999999999999875321 111 122223344567777889999999
Q ss_pred HHHHHHHHhcccCCCCCCccceecccccchhhhHHHHHHHHHHHHhhhcchHHHHHHHHhCccCCCCHHHHHHHHHHHHH
Q 001381 534 AAAAFQENVGRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNKICHWDKVLRELAAEALSA 613 (1089)
Q Consensus 534 AsAAlQE~vGR~g~~p~GI~il~~~d~~~v~~r~~a~~~va~~va~~~~Y~~~li~~Ll~~~l~h~D~~iR~laa~aL~~ 613 (1089)
|..+|..+....+..+ .+ .+...+++.|+. .+.|.|..+|..|+.+|+.
T Consensus 235 a~~~L~~L~~~~~~~~---------~~---------------------~~~~~~l~~L~~-lL~~~d~~v~~~a~~~L~~ 283 (530)
T 1wa5_B 235 ATWTLSNLCRGKKPQP---------DW---------------------SVVSQALPTLAK-LIYSMDTETLVDACWAISY 283 (530)
T ss_dssp HHHHHHHHHCCSSSCC---------CH---------------------HHHGGGHHHHHH-HTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCC---------cH---------------------HHHHhHHHHHHH-HHcCCCHHHHHHHHHHHHH
Confidence 9999988753221110 00 001124444544 4568899999999999999
Q ss_pred HHccCchhhH----HHHHHHhccccCCCChhhHHHHHHHHHHHHHHHhcccccCChhHHHHHHhhhHHHHhhhhccCcch
Q 001381 614 LVKYDPEYFA----NFILEKLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPADKQKIVAGIVPGIEKARLYRGKGG 689 (1089)
Q Consensus 614 L~~~~~~~~~----~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~l~~~~~~~~~~~~~~i~~i~~~~~~~~l~r~~~g 689 (1089)
|+...++... ..++|.+++.+.+.+..+|..++.+++.+... .+.....+
T Consensus 284 L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~--------~~~~~~~~------------------ 337 (530)
T 1wa5_B 284 LSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTG--------NDLQTQVV------------------ 337 (530)
T ss_dssp HHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS--------CHHHHHHH------------------
T ss_pred HhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcC--------CHHHHHHH------------------
Confidence 9976654322 14567777777777777777777766665421 01100000
Q ss_pred HHHHHHHHHHHHHhhhcCCCCchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCcc--hhhhhHHHHHHH
Q 001381 690 EIMRSAVSRFIECISLSFVSLPEKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSG--VVGGISLKYMEQ 767 (1089)
Q Consensus 690 elir~a~~~lI~~ls~~~lp~~~~~~~~~~~~L~~~L~~~~~~V~~aAa~Al~~l~~~y~~~~~~~--~~~~~v~~~~~~ 767 (1089)
+. ..+...+...|.+++..++..|+.++..+.... ..... ....+++.+++.
T Consensus 338 ----------~~--------------~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~--~~~~~~~~~~~~l~~L~~l 391 (530)
T 1wa5_B 338 ----------IN--------------AGVLPALRLLLSSPKENIKKEACWTISNITAGN--TEQIQAVIDANLIPPLVKL 391 (530)
T ss_dssp ----------HH--------------TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC--HHHHHHHHHTTCHHHHHHH
T ss_pred ----------HH--------------cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC--HHHHHHHHHCCCHHHHHHH
Confidence 00 012223444556777888888888877664310 00000 013567778888
Q ss_pred hCCCChhhhhhHHHHhhccchHhhh--hh---H--HHHHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHhhhcccccc
Q 001381 768 LTDPNPAIRRGSALALGVLPYELLA--NS---W--RDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQSQEN 840 (1089)
Q Consensus 768 L~s~~~~~r~G~a~aLG~lp~~~~~--~~---~--~~i~~~L~~~~~~~~~~~~~d~e~R~~al~sL~~i~~~~g~~~~~ 840 (1089)
|++.++..+..++.+|+.+-..... .. + ..++..|+..+ ...+.+.|..|+.+|..++.........
T Consensus 392 L~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll------~~~~~~v~~~al~aL~~l~~~~~~~~~~ 465 (530)
T 1wa5_B 392 LEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLL------EIADNRIIEVTLDALENILKMGEADKEA 465 (530)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHT------TTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHH------hCCCHHHHHHHHHHHHHHHHhhhhhhhc
Confidence 8777888899999999887432110 11 1 12455565554 3457899999999999987532110000
Q ss_pred ccccCCcchhhhhhhhHH--HHHHHHHHhcccCCCCCCCCcchHHHHHHHHHHHHHH
Q 001381 841 SLIHSGEDEISLFHLIKN--EVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEICT 895 (1089)
Q Consensus 841 ~~~~~~~~~~~~~~~~~~--~i~~~Ll~~L~DYT~D~RGDVGSwVR~aa~~~l~~l~ 895 (1089)
.. +..+ ..+ ..+. ..++.|...+++.. .-||+.|...|..++
T Consensus 466 ~~-~~~~---~~~-~~l~~~g~~~~L~~L~~~~~--------~~v~~~a~~il~~~~ 509 (530)
T 1wa5_B 466 RG-LNIN---ENA-DFIEKAGGMEKIFNCQQNEN--------DKIYEKAYKIIETYF 509 (530)
T ss_dssp HT-CSSC---HHH-HHHHHTTHHHHHHGGGGCSC--------HHHHHHHHHHHHHHS
T ss_pred cc-cccc---HHH-HHHHHcCcHHHHHHHHcCCC--------HHHHHHHHHHHHHHC
Confidence 00 0000 000 1111 13455555555432 348999999998764
No 16
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=98.89 E-value=1.5e-07 Score=108.81 Aligned_cols=350 Identities=15% Similarity=0.107 Sum_probs=216.9
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHHHhhh-Ccc---h-hh-hHHHHHHhhcCCCCCCcchHHHHHHHHHHHhcCCCCC
Q 001381 385 IIEILLSGLRDTDTVVRWSAAKGIGRITSCL-TSS---L-SE-EVFSSVLELFSPGEGDGSWHGGCLALAELARRGLLLP 458 (1089)
Q Consensus 385 iI~~ll~~L~d~dt~vR~saAK~l~rI~~~L-~~~---~-a~-~vi~~il~~l~~~~~~~~wHg~~LaLael~~~~ll~p 458 (1089)
+|..|++.|.+.|..+|..|++.|.++...- .+. + .. .+++.+++.+....++.....++-+|+.++....-..
T Consensus 21 ~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~ 100 (450)
T 2jdq_A 21 ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT 100 (450)
T ss_dssp -CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 4677777788899999999999999987632 222 1 22 6888899888765444445667888888876321000
Q ss_pred Ccc--cchHHHHHHhhhhhccccccCCChhhhhhhhHHHHHhhhccCccchhH-HHHHHHHHHHHHHhc-CCCchhhHHH
Q 001381 459 SSL--PKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRN-ILEQIAPHLLTVACY-DREVNCRRAA 534 (1089)
Q Consensus 459 ~~l--~~il~~i~~~L~f~~r~~~~svG~~VRDAacfi~WslaR~~~~~~l~~-~~~~l~~~Ll~~alf-D~e~~iRRaA 534 (1089)
..+ ..++|.+.+.|.-+ -..||..|+.+++.++..... ... .++.=+...++..+- |.+..+|+.|
T Consensus 101 ~~~~~~~~i~~L~~lL~~~--------~~~vr~~a~~~L~~l~~~~~~--~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a 170 (450)
T 2jdq_A 101 RIVIQAGAVPIFIELLSSE--------FEDVQEQAVWALGNIAGDSTM--CRDYVLDCNILPPLLQLFSKQNRLTMTRNA 170 (450)
T ss_dssp HHHHHTTHHHHHHHHTTCS--------CHHHHHHHHHHHHHHHTTCHH--HHHHHHHTTCHHHHHHHTTSCCCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHcCC--------CHHHHHHHHHHHHHHccCCHH--HHHHHHHCCCHHHHHHHhcCCCCHHHHHHH
Confidence 001 34678877776422 267999999999999875421 122 222112333445555 4789999999
Q ss_pred HHHHHHHhcccCCCCCCccceecccccchhhhHHHHHHHHHHHHhhhcchHHHHHHHHhCccCCCCHHHHHHHHHHHHHH
Q 001381 535 AAAFQENVGRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNKICHWDKVLRELAAEALSAL 614 (1089)
Q Consensus 535 sAAlQE~vGR~g~~p~GI~il~~~d~~~v~~r~~a~~~va~~va~~~~Y~~~li~~Ll~~~l~h~D~~iR~laa~aL~~L 614 (1089)
..+|..+....+..+ +. .+...+++.|+. .+.+.|..+|..++.+|+.+
T Consensus 171 ~~~L~~l~~~~~~~~---------~~---------------------~~~~~~l~~L~~-~l~~~~~~v~~~a~~~L~~l 219 (450)
T 2jdq_A 171 VWALSNLCRGKSPPP---------EF---------------------AKVSPCLNVLSW-LLFVSDTDVLADACWALSYL 219 (450)
T ss_dssp HHHHHHHHCCSSSCC---------CG---------------------GGTGGGHHHHHH-HTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCC---------CH---------------------HHHHHHHHHHHH-HHccCCHHHHHHHHHHHHHH
Confidence 999987753221110 00 001223444443 45578999999999999999
Q ss_pred HccCchhhH----HHHHHHhccccCCCChhhHHHHHHHHHHHHHHHhcccccCChhHHHHHH--hhhHHHHhhhhccCcc
Q 001381 615 VKYDPEYFA----NFILEKLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPADKQKIVA--GIVPGIEKARLYRGKG 688 (1089)
Q Consensus 615 ~~~~~~~~~----~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~l~~~~~~~~~~~~~~i~--~i~~~~~~~~l~r~~~ 688 (1089)
+...++... ..++|.+++.+.+.+..+|..++.+++.+.... +.....+. ++++.+.+ +.+. +
T Consensus 220 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~--------~~~~~~~~~~~~l~~L~~--ll~~-~ 288 (450)
T 2jdq_A 220 SDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGD--------DIQTQVILNCSALQSLLH--LLSS-P 288 (450)
T ss_dssp TSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC--------HHHHHHHHTTTHHHHHHH--HTTC-S
T ss_pred HCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCC--------hHHHHHHHHCccHHHHHH--HHcC-C
Confidence 986554221 246788888888889999999999988876421 11111111 22333321 1121 2
Q ss_pred hHHHHHHHHHHHHHhhhcCCCCchhhH-HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCcc--hhhhhHHHHH
Q 001381 689 GEIMRSAVSRFIECISLSFVSLPEKTK-RSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSG--VVGGISLKYM 765 (1089)
Q Consensus 689 gelir~a~~~lI~~ls~~~lp~~~~~~-~~~~~~L~~~L~~~~~~V~~aAa~Al~~l~~~y~~~~~~~--~~~~~v~~~~ 765 (1089)
..-+|.+++..+..++...-.....+. ......+...|.+++..||..|+.++..+....... ... ....+++.++
T Consensus 289 ~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~-~~~~l~~~~~i~~L~ 367 (450)
T 2jdq_A 289 KESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAE-QIKYLVELGCIKPLC 367 (450)
T ss_dssp SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHH-HHHHHHHCCCHHHHH
Confidence 356888899999888742211001111 133444555566788999999999999886531000 000 1145788888
Q ss_pred HHhCCCChhhhhhHHHHhhccc
Q 001381 766 EQLTDPNPAIRRGSALALGVLP 787 (1089)
Q Consensus 766 ~~L~s~~~~~r~G~a~aLG~lp 787 (1089)
+.+++.++..+...+.+|+.+-
T Consensus 368 ~ll~~~~~~v~~~a~~aL~~l~ 389 (450)
T 2jdq_A 368 DLLTVMDSKIVQVALNGLENIL 389 (450)
T ss_dssp HGGGSSCHHHHHHHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHH
Confidence 8888778888888888877664
No 17
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=98.84 E-value=8.9e-07 Score=102.23 Aligned_cols=392 Identities=11% Similarity=0.037 Sum_probs=227.3
Q ss_pred hhhhhhhhHHHHHhhhccCccchhHHHHH-HHHHHHHHHhcCC-CchhhHHHHHHHHHHhcccCCCCCCccceecccccc
Q 001381 485 SHVRDAAAYVCWAFGRAYCHTDMRNILEQ-IAPHLLTVACYDR-EVNCRRAAAAAFQENVGRQGNYPHGIDIVNTADYFS 562 (1089)
Q Consensus 485 ~~VRDAacfi~WslaR~~~~~~l~~~~~~-l~~~Ll~~alfD~-e~~iRRaAsAAlQE~vGR~g~~p~GI~il~~~d~~~ 562 (1089)
..+|..|+..+..+...........++.. -+...++..+-+. +..+|..|..++..+.....
T Consensus 34 ~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~---------------- 97 (450)
T 2jdq_A 34 PEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNS---------------- 97 (450)
T ss_dssp HHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCH----------------
T ss_pred HHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCH----------------
Confidence 56888888888877543222223444443 3344455677777 78999999999887643110
Q ss_pred hhhhHHHHHHHHHHHHhhhcchHHHHHHHHhCccCCCCHHHHHHHHHHHHHHHccCchhh---H-HHHHHHhccccCC-C
Q 001381 563 LSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNKICHWDKVLRELAAEALSALVKYDPEYF---A-NFILEKLTPFTLS-T 637 (1089)
Q Consensus 563 v~~r~~a~~~va~~va~~~~Y~~~li~~Ll~~~l~h~D~~iR~laa~aL~~L~~~~~~~~---~-~~vlp~Ll~~l~~-~ 637 (1089)
... ..+.+ ...++.|+. .+.+.|..+|+.|+.+|++++...++.- . ..++|.+++.+.+ .
T Consensus 98 --~~~-------~~~~~-----~~~i~~L~~-lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~ 162 (450)
T 2jdq_A 98 --LQT-------RIVIQ-----AGAVPIFIE-LLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQN 162 (450)
T ss_dssp --HHH-------HHHHH-----TTHHHHHHH-HTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCC
T ss_pred --HHH-------HHHHh-----CCCHHHHHH-HHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCC
Confidence 000 01111 124555554 5667899999999999999998765421 1 2357777777774 6
Q ss_pred ChhhHHHHHHHHHHHHHHHhcccccCChhHHHHHHhhhHHHHhhhhccCcchHHHHHHHHHHHHHhhhcCCCCchhh-HH
Q 001381 638 DLCTRHGATLAAGEVVLALCKYDYALPADKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLPEKT-KR 716 (1089)
Q Consensus 638 d~~~RHG~lLalaevl~~l~~~~~~~~~~~~~~i~~i~~~~~~~~l~r~~~gelir~a~~~lI~~ls~~~lp~~~~~-~~ 716 (1089)
+..+|..++.+++.+...-. ....... +..+++.+.+ +.+. +.+-++..+|..+..++....+..... ..
T Consensus 163 ~~~v~~~a~~~L~~l~~~~~---~~~~~~~---~~~~l~~L~~--~l~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 233 (450)
T 2jdq_A 163 RLTMTRNAVWALSNLCRGKS---PPPEFAK---VSPCLNVLSW--LLFV-SDTDVLADACWALSYLSDGPNDKIQAVIDA 233 (450)
T ss_dssp CHHHHHHHHHHHHHHHCCSS---SCCCGGG---TGGGHHHHHH--HTTC-CCHHHHHHHHHHHHHHTSSSHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHhCCCC---CCCCHHH---HHHHHHHHHH--HHcc-CCHHHHHHHHHHHHHHHCCCcHHHHHHHHc
Confidence 88999999988888764210 0001111 1223333321 1111 234567777888877774221100111 11
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCcchhhhhHHHHHHHhCCCChhhhhhHHHHhhccchHh---hhh
Q 001381 717 SLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLTDPNPAIRRGSALALGVLPYEL---LAN 793 (1089)
Q Consensus 717 ~~~~~L~~~L~~~~~~V~~aAa~Al~~l~~~y~~~~~~~~~~~~v~~~~~~L~s~~~~~r~G~a~aLG~lp~~~---~~~ 793 (1089)
.....+...|.+++..++..|..++..+....-...........++.+++.+++.++..|..++.+||.+.... ...
T Consensus 234 ~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~ 313 (450)
T 2jdq_A 234 GVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQT 313 (450)
T ss_dssp TTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 23445556678999999999999998775311000000001357888888888888999999999999886321 111
Q ss_pred hH-HHHHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHhhhccccccccccCCcchhhhhhhh-HHHHHHHHHHhcccC
Q 001381 794 SW-RDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLI-KNEVMTSLFKALDDY 871 (1089)
Q Consensus 794 ~~-~~i~~~L~~~~~~~~~~~~~d~e~R~~al~sL~~i~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~i~~~Ll~~L~DY 871 (1089)
.. ..++..|+..+. ..+.+.|.+|+.+|..++..... . ..... -..+++.|+..+++.
T Consensus 314 ~~~~~~l~~L~~~l~------~~~~~v~~~a~~~L~~l~~~~~~----~----------~~~~l~~~~~i~~L~~ll~~~ 373 (450)
T 2jdq_A 314 VIDANIFPALISILQ------TAEFRTRKEAAWAITNATSGGSA----E----------QIKYLVELGCIKPLCDLLTVM 373 (450)
T ss_dssp HHHTTHHHHHHHHHH------HSCHHHHHHHHHHHHHHHHHCCH----H----------HHHHHHHHTCHHHHHHGGGSS
T ss_pred HHHCCCHHHHHHHHh------cCCHHHHHHHHHHHHHHHcCCCH----H----------HHHHHHHCCCHHHHHHHhcCC
Confidence 01 134455555542 23679999999999998753110 0 00111 124778888888763
Q ss_pred CCCCCCCcchHHHHHHHHHHHHHHHHhhccCCCCCCCCCccccccCCCCccc-cccccCHHHHHHH-----HHHHHHHhh
Q 001381 872 SVDNRGDVGSWVREAAVDGLEICTYILCKRDFVPSPEKPQEVKSELPGNVTA-EKTLFDANLATNL-----VAGIVKQAV 945 (1089)
Q Consensus 872 T~D~RGDVGSwVR~aa~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l-----~~~llrq~~ 945 (1089)
| ..||+.|+.+|..++..-... .. .....+ .+...+ +..|.++.-
T Consensus 374 ------~--~~v~~~a~~aL~~l~~~~~~~--------------------~~~~~~~~~-~~~~~l~~~g~~~~l~~l~~ 424 (450)
T 2jdq_A 374 ------D--SKIVQVALNGLENILRLGEQE--------------------AKRNGTGIN-PYCALIEEAYGLDKIEFLQS 424 (450)
T ss_dssp ------C--HHHHHHHHHHHHHHHHHHHHH--------------------HHHSCSCCC-HHHHHHHHHHCHHHHHHHHC
T ss_pred ------C--HHHHHHHHHHHHHHHHhchhh--------------------hhccccchh-HHHHHHHHcCcHHHHHHHHc
Confidence 2 469999999998875321100 00 000011 122222 334555555
Q ss_pred hhhHHHHHHHHHHHHHHhhc
Q 001381 946 EKMDKLREAAAKVLRRILYN 965 (1089)
Q Consensus 946 EkiD~vR~~A~~~L~~l~~~ 965 (1089)
.+-..||..|..++..++..
T Consensus 425 ~~~~~v~~~a~~~l~~~~~~ 444 (450)
T 2jdq_A 425 HENQEIYQKAFDLIEHYFGT 444 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHHHCCc
Confidence 55678899998888888644
No 18
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=98.74 E-value=6.7e-07 Score=112.49 Aligned_cols=459 Identities=12% Similarity=0.013 Sum_probs=260.9
Q ss_pred HHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhCcc--h--hhhHHHHHHhhcCCCCCCcchHHHHHHHHHHHhcCC
Q 001381 380 DILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSS--L--SEEVFSSVLELFSPGEGDGSWHGGCLALAELARRGL 455 (1089)
Q Consensus 380 e~vE~iI~~ll~~L~d~dt~vR~saAK~l~rI~~~L~~~--~--a~~vi~~il~~l~~~~~~~~wHg~~LaLael~~~~l 455 (1089)
+.....|+.|...|.+.++.||..|+++|+.|+..-+.. . ...+++.+++.+...++......++-+|..++...-
T Consensus 146 ~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~ 225 (780)
T 2z6g_A 146 ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHRE 225 (780)
T ss_dssp HHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHH
T ss_pred HHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCch
Confidence 334778888888888999999999999999999753221 1 236888888888644333344556777877765421
Q ss_pred CCCCcc--cchHHHHHHhhhhhccccccCCChhhhhhhhHHHHHhhhccCccchhHHHHHHHHHHHHHHhcCCCchhhHH
Q 001381 456 LLPSSL--PKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRA 533 (1089)
Q Consensus 456 l~p~~l--~~il~~i~~~L~f~~r~~~~svG~~VRDAacfi~WslaR~~~~~~l~~~~~~l~~~Ll~~alfD~e~~iRRa 533 (1089)
. ...+ ..++|.+...|.-. ...||-.|+.+++.++..+.. .-..+.+.=+...++..+-+.+..+|+.
T Consensus 226 ~-~~~i~~~g~I~~Lv~lL~~~--------~~~v~~~A~~aL~nLa~~~~~-~~~~v~~~g~v~~Lv~lL~~~~~~v~~~ 295 (780)
T 2z6g_A 226 G-LLAIFKSGGIPALVNMLGSP--------VDSVLFHAITTLHNLLLHQEG-AKMAVRLAGGLQKMVALLNKTNVKFLAI 295 (780)
T ss_dssp H-HHHHHHTTHHHHHHHHTTCS--------CHHHHHHHHHHHHHHHHHSTT-HHHHHHHTTHHHHHHHGGGCCCHHHHHH
T ss_pred h-HHHHHHcCCHHHHHHHHcCC--------CHHHHHHHHHHHHHHhCCChh-hHHHHHHcCCHHHHHHHHhcCCHHHHHH
Confidence 0 0011 23677776666322 267999999999999988653 1222333334555667777888999999
Q ss_pred HHHHHHHHhccc--C----CCCCCccc-eecccccchhhhHHHHHHHHHHHHhhhcchHH-----HHHHHHhCccCCCCH
Q 001381 534 AAAAFQENVGRQ--G----NYPHGIDI-VNTADYFSLSSRVYSYLHVAVFIAQYEGYLYP-----FVDELLYNKICHWDK 601 (1089)
Q Consensus 534 AsAAlQE~vGR~--g----~~p~GI~i-l~~~d~~~v~~r~~a~~~va~~va~~~~Y~~~-----li~~Ll~~~l~h~D~ 601 (1089)
|..+++.+.-.. + .-..|+.. +....-..-..+..+-..+...++..+..... .++.|+. .+.+.+.
T Consensus 296 a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~-lL~~~~~ 374 (780)
T 2z6g_A 296 TTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGL-HLTDPSQ 374 (780)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGG-GTTCSCH
T ss_pred HHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHH-HHcCCch
Confidence 988887443100 0 00112211 11111111111111112222223333333333 3566665 6778899
Q ss_pred HHHHHHHHHHHHHHccCchh-hHHHHHHHhccccCCCChhhHHHHHHHHHHHHHHHhcccccCChhHHH------HHHhh
Q 001381 602 VLRELAAEALSALVKYDPEY-FANFILEKLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPADKQK------IVAGI 674 (1089)
Q Consensus 602 ~iR~laa~aL~~L~~~~~~~-~~~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~l~~~~~~~~~~~~~------~i~~i 674 (1089)
.+++-++.+|.+|+...+.. ....++|.|++.+.+.+..+|..++.+++.+... +++... .+..+
T Consensus 375 ~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~--------~~~~~~~i~~~g~i~~L 446 (780)
T 2z6g_A 375 RLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN--------NYKNKMMVCQVGGIEAL 446 (780)
T ss_dssp HHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS--------CHHHHHHHHTTTHHHHH
T ss_pred HHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhC--------CHHHHHHHHHCCCHHHH
Confidence 99999999999999755432 2346889999888999999999988888877432 111111 12222
Q ss_pred hHHHHhhhhccCcchHHHHHHHHHHHHHhhhcCCCCch----hh-HHHHHHHHHHhcCCCcH-HHHHHHHHHHHHHHHHh
Q 001381 675 VPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLPE----KT-KRSLLDTLNENLRHPNS-QIQNAAVKALKPFVQTY 748 (1089)
Q Consensus 675 ~~~~~~~~l~r~~~gelir~a~~~lI~~ls~~~lp~~~----~~-~~~~~~~L~~~L~~~~~-~V~~aAa~Al~~l~~~y 748 (1089)
+..+.+. ...+-++..++..+..++... +-.. .+ ....+..|...|.+++. .|+.+|+.++..+...-
T Consensus 447 v~lL~~~-----~~~~~v~~~Al~aL~nL~~~~-~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~ 520 (780)
T 2z6g_A 447 VRTVLRA-----GDREDITEPAICALRHLTSRH-QDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP 520 (780)
T ss_dssp HHHHHHH-----TTCHHHHHHHHHHHHHTTSSS-TTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSH
T ss_pred HHHHHcc-----CCHHHHHHHHHHHHHHHHhcC-chHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCH
Confidence 3333211 012357777788888776422 1110 00 01123445666777775 99999999998875310
Q ss_pred hhccCcchhhhhHHHHHHHhCCCCh----------------------hhhhhHHHHhhccchHhhh-hhH--HHHHHHHh
Q 001381 749 MVAADSGVVGGISLKYMEQLTDPNP----------------------AIRRGSALALGVLPYELLA-NSW--RDVLLKLC 803 (1089)
Q Consensus 749 ~~~~~~~~~~~~v~~~~~~L~s~~~----------------------~~r~G~a~aLG~lp~~~~~-~~~--~~i~~~L~ 803 (1089)
-.. .......+++.+++.|++.+. ..+...+.+|+.+...... ..+ ..++..|+
T Consensus 521 ~~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv 599 (780)
T 2z6g_A 521 ANH-APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFV 599 (780)
T ss_dssp HHH-HHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHH
T ss_pred HHH-HHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHH
Confidence 000 000013456666665543222 2344455555555321100 000 12344555
Q ss_pred hhccccCCCCCCCHHHHHHHHHHHHHHHhhhccccccccccCCcchhhhhhhhHHH--HHHHHHHhcccCCCCCCCCcch
Q 001381 804 SCCLIEENPEDRDTEARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNE--VMTSLFKALDDYSVDNRGDVGS 881 (1089)
Q Consensus 804 ~~~~~~~~~~~~d~e~R~~al~sL~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--i~~~Ll~~L~DYT~D~RGDVGS 881 (1089)
..+. ..+.+.|.+|+.+|..+...- .. ...+.+ .++.|...+.|-. .
T Consensus 600 ~lL~------~~~~~v~~~a~~aL~~L~~~~----------------~~-~~~i~~~g~i~~L~~Ll~~~~--------~ 648 (780)
T 2z6g_A 600 QLLY------SPIENIQRVAAGVLCELAQDK----------------EA-AEAIEAEGATAPLTELLHSRN--------E 648 (780)
T ss_dssp HGGG------CSCHHHHHHHHHHHHHHHTSH----------------HH-HHHHHHTTCHHHHHHGGGCSC--------H
T ss_pred HHHc------CCCHHHHHHHHHHHHHHhcCH----------------HH-HHHHHHCCCHHHHHHHHcCCC--------H
Confidence 5542 347899999999998875210 00 111222 4667777776642 3
Q ss_pred HHHHHHHHHHHHHH
Q 001381 882 WVREAAVDGLEICT 895 (1089)
Q Consensus 882 wVR~aa~~~l~~l~ 895 (1089)
-||+.|..+|..+.
T Consensus 649 ~Vr~~A~~aL~~l~ 662 (780)
T 2z6g_A 649 GVATYAAAVLFRMS 662 (780)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 49999999998764
No 19
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.73 E-value=1.5e-05 Score=102.35 Aligned_cols=482 Identities=8% Similarity=0.051 Sum_probs=258.9
Q ss_pred HHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhCcchhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHHhcCC-CCC
Q 001381 380 DILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSLSEEVFSSVLELFSPGEGDGSWHGGCLALAELARRGL-LLP 458 (1089)
Q Consensus 380 e~vE~iI~~ll~~L~d~dt~vR~saAK~l~rI~~~L~~~~a~~vi~~il~~l~~~~~~~~wHg~~LaLael~~~~l-l~p 458 (1089)
+.-+.|=+.++..+.+....||-.+|..++.|+..--++--.++++.+++.++.. +...+||++.+|.+++++-- .+.
T Consensus 81 ~~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~~Wp~ll~~L~~~l~s~-~~~~~~~aL~~l~~i~~~~~~~~~ 159 (960)
T 1wa5_C 81 NNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSND-DMVTNKGVLTVAHSIFKRWRPLFR 159 (960)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCCSS-CTTHHHHHHHHHHHHHGGGTTSCC
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCccchhHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5566677888888887779999999999999998843344578999999999764 56789999999999987521 011
Q ss_pred C--c-------ccchHHHHHHhhhh-hc-cccccCCChhhhhh------hhHHHHHhhhccCccchhHHHHHHHHHHHHH
Q 001381 459 S--S-------LPKVVPVIVKALHY-DI-RRGSHSVGSHVRDA------AAYVCWAFGRAYCHTDMRNILEQIAPHLLTV 521 (1089)
Q Consensus 459 ~--~-------l~~il~~i~~~L~f-~~-r~~~~svG~~VRDA------acfi~WslaR~~~~~~l~~~~~~l~~~Ll~~ 521 (1089)
. . +....|.+..-+.- .+ -+...+-...+|.+ ++=+.|++...--|+.+...+......+ ..
T Consensus 160 ~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~-~~ 238 (960)
T 1wa5_C 160 SDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIF-HK 238 (960)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHH-HH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-HH
Confidence 1 0 12222322221110 00 01110111224433 5556677654333433333333333222 12
Q ss_pred Hh-c-------C---CC----chhhHHHHHHHHHHhcccCC-C-CCCccceecc-c--------ccchhhhHHHHHHHHH
Q 001381 522 AC-Y-------D---RE----VNCRRAAAAAFQENVGRQGN-Y-PHGIDIVNTA-D--------YFSLSSRVYSYLHVAV 575 (1089)
Q Consensus 522 al-f-------D---~e----~~iRRaAsAAlQE~vGR~g~-~-p~GI~il~~~-d--------~~~v~~r~~a~~~va~ 575 (1089)
.+ . | ++ ..+|+.+..+|..+..|++. | ||=-.+++.. + +-.=..+..++.=+.
T Consensus 239 ~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~- 317 (960)
T 1wa5_C 239 YLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLT- 317 (960)
T ss_dssp HHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHH-
T ss_pred HHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHH-
Confidence 11 1 1 22 35899999999998888753 1 1100111100 0 000011112211111
Q ss_pred HHHh-------hh--cchHHHHHHHHhCc-------cCCC----------------CHHHHHHHHHHHHHHHccCchhhH
Q 001381 576 FIAQ-------YE--GYLYPFVDELLYNK-------ICHW----------------DKVLRELAAEALSALVKYDPEYFA 623 (1089)
Q Consensus 576 ~va~-------~~--~Y~~~li~~Ll~~~-------l~h~----------------D~~iR~laa~aL~~L~~~~~~~~~ 623 (1089)
.+.. +. .|...++++++-.. ..-| +...|..|+..|..++...++.+.
T Consensus 318 ~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~~v~ 397 (960)
T 1wa5_C 318 AVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLVT 397 (960)
T ss_dssp HHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcchhHH
Confidence 1111 11 34444443222111 1112 126899999999999998887777
Q ss_pred HHHHHHhccccC------CCChhhHHHHHHHHHHHHHHHhcccccCCh-----hHHHHHH-hhhHHHHhhhhccCcchHH
Q 001381 624 NFILEKLTPFTL------STDLCTRHGATLAAGEVVLALCKYDYALPA-----DKQKIVA-GIVPGIEKARLYRGKGGEI 691 (1089)
Q Consensus 624 ~~vlp~Ll~~l~------~~d~~~RHG~lLalaevl~~l~~~~~~~~~-----~~~~~i~-~i~~~~~~~~l~r~~~gel 691 (1089)
..+++.+.+.+. +.+|..|++++++++.+............. +...-+. .+++.+... +.....
T Consensus 398 ~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~----~~~~p~ 473 (960)
T 1wa5_C 398 NIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSN----NIPHII 473 (960)
T ss_dssp HHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCS----SCSCHH
T ss_pred HHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCC----CCCCce
Confidence 777776655554 678999999999999986532111111110 2211111 233333211 012458
Q ss_pred HHHHHHHHHHHhhhcCCCCchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhh------ccCcc----hhhhhH
Q 001381 692 MRSAVSRFIECISLSFVSLPEKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMV------AADSG----VVGGIS 761 (1089)
Q Consensus 692 ir~a~~~lI~~ls~~~lp~~~~~~~~~~~~L~~~L~~~~~~V~~aAa~Al~~l~~~y~~------~~~~~----~~~~~v 761 (1089)
+|.++|..++..+.. + ..+.....+..+..+|.+++..||.+|+.|+..++..... ....+ -...++
T Consensus 474 vr~~a~~~lg~~~~~-~--~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll 550 (960)
T 1wa5_C 474 LRVDAIKYIYTFRNQ-L--TKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILL 550 (960)
T ss_dssp HHHHHHHHHHHTGGG-S--CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHH
T ss_pred ehHHHHHHHHHHHhh-C--CHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHH
Confidence 999999999988752 3 3455666677777788888899999999999987652110 00011 125666
Q ss_pred HHHHHHhCCCC--hh---hhhhHHHHhhcc----chHhhhhhHHHHHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHh
Q 001381 762 LKYMEQLTDPN--PA---IRRGSALALGVL----PYELLANSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCE 832 (1089)
Q Consensus 762 ~~~~~~L~s~~--~~---~r~G~a~aLG~l----p~~~~~~~~~~i~~~L~~~~~~~~~~~~~d~e~R~~al~sL~~i~~ 832 (1089)
+.+++.++... +. .......+++.+ +.. ..+....++..|+.......+ +..+...+..++.+|+.++.
T Consensus 551 ~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~-~~p~~~~l~~~L~~~l~~~~~-~~~~~~~~~~~~e~l~~l~~ 628 (960)
T 1wa5_C 551 KNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDS-IQPLFPQLLAQFIEIVTIMAK-NPSNPRFTHYTFESIGAILN 628 (960)
T ss_dssp HHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTT-TGGGHHHHHHHHHHHHHHHTT-SCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHHHHh
Confidence 66666664320 00 111223333332 221 234455555555544332111 23467788888999988876
Q ss_pred hhccccccccccCCcchhhhhhhhHHHHHHHHHHhcccCCCCCCCCcchHHHHHHHHHHHHHH
Q 001381 833 TLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEICT 895 (1089)
Q Consensus 833 ~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~L~DYT~D~RGDVGSwVR~aa~~~l~~l~ 895 (1089)
..+. .......+.+++.+...|..+.. -.++.+++.+..++
T Consensus 629 ~~~~--------------~~~~~~~~~~~p~~~~iL~~~~~--------~~~~~~~~i~~~l~ 669 (960)
T 1wa5_C 629 YTQR--------------QNLPLLVDSMMPTFLTVFSEDIQ--------EFIPYVFQIIAFVV 669 (960)
T ss_dssp TSCG--------------GGHHHHHHHHHHHHHHHHHTTCT--------TTHHHHHHHHHHHH
T ss_pred cCCc--------------chHHHHHHHHHHHHHHHHHhhhH--------hhHHHHHHHHHHHH
Confidence 5221 12234455666766666654322 25677787777665
No 20
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=98.70 E-value=9.5e-07 Score=105.20 Aligned_cols=390 Identities=15% Similarity=0.088 Sum_probs=233.4
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhCcch-----hhhHHHHHHhhcCCCCCCcchHHHHHHHHHHHhcCCC
Q 001381 382 LEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSL-----SEEVFSSVLELFSPGEGDGSWHGGCLALAELARRGLL 456 (1089)
Q Consensus 382 vE~iI~~ll~~L~d~dt~vR~saAK~l~rI~~~L~~~~-----a~~vi~~il~~l~~~~~~~~wHg~~LaLael~~~~ll 456 (1089)
.++.|+.|+..|.+.+..+|..|+++|.++...-+.+. ...+|+.+++.+....++..-..++-+|+.++....-
T Consensus 72 ~~~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~ 151 (528)
T 4b8j_A 72 KLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSE 151 (528)
T ss_dssp ---CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence 34557788888889999999999999999987654221 2458889999887654344445678888888874310
Q ss_pred CCCcc--cchHHHHHHhhhhhccccccCCChhhhhhhhHHHHHhhhccCccchhHHH-H-HHHHHHHHHHh-cCCCchhh
Q 001381 457 LPSSL--PKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNIL-E-QIAPHLLTVAC-YDREVNCR 531 (1089)
Q Consensus 457 ~p~~l--~~il~~i~~~L~f~~r~~~~svG~~VRDAacfi~WslaR~~~~~~l~~~~-~-~l~~~Ll~~al-fD~e~~iR 531 (1089)
....+ ..++|.+.+.|.-. -..||..|+.+++.++.... .....+ . ..+..| +..+ -+.+..+|
T Consensus 152 ~~~~~~~~g~i~~L~~lL~~~--------~~~v~~~a~~aL~~l~~~~~--~~~~~i~~~g~l~~L-l~lL~~~~~~~v~ 220 (528)
T 4b8j_A 152 NTKVVIDHGAVPIFVKLLGSS--------SDDVREQAVWALGNVAGDSP--KCRDLVLANGALLPL-LAQLNEHTKLSML 220 (528)
T ss_dssp HHHHHHHTTHHHHHHHHTTCS--------CHHHHHHHHHHHHHHHHTCH--HHHHHHHHTTCHHHH-HHTCCTTCCHHHH
T ss_pred HHHHHHhCCcHHHHHHHhcCC--------CHHHHHHHHHHHHHHhCCCh--hhHHHHHHCCcHHHH-HHHHhcCCCHHHH
Confidence 00001 23677777766321 25799999999999986422 122222 1 133333 4455 57789999
Q ss_pred HHHHHHHHHHhcccCCCCCCccceecccccchhhhHHHHHHHHHHHHhhhcchHHHHHHHHhCccCCCCHHHHHHHHHHH
Q 001381 532 RAAAAAFQENVGRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNKICHWDKVLRELAAEAL 611 (1089)
Q Consensus 532 RaAsAAlQE~vGR~g~~p~GI~il~~~d~~~v~~r~~a~~~va~~va~~~~Y~~~li~~Ll~~~l~h~D~~iR~laa~aL 611 (1089)
+.|..+|..+........ . .....+++.|+. .+.+.|..+|.-|+.+|
T Consensus 221 ~~a~~~L~~L~~~~~~~~----------~---------------------~~~~~~l~~L~~-lL~~~~~~v~~~a~~aL 268 (528)
T 4b8j_A 221 RNATWTLSNFCRGKPQPS----------F---------------------EQTRPALPALAR-LIHSNDEEVLTDACWAL 268 (528)
T ss_dssp HHHHHHHHHHHCSSSCCC----------H---------------------HHHTTHHHHHHH-HTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCc----------H---------------------HHHHHHHHHHHH-HHCCCCHHHHHHHHHHH
Confidence 999999987754321110 0 001234555554 56789999999999999
Q ss_pred HHHHccCchhhH----HHHHHHhccccCCCChhhHHHHHHHHHHHHHHHhcccccCChhHHHHHH--hhhHHHHhhhhcc
Q 001381 612 SALVKYDPEYFA----NFILEKLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPADKQKIVA--GIVPGIEKARLYR 685 (1089)
Q Consensus 612 ~~L~~~~~~~~~----~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~l~~~~~~~~~~~~~~i~--~i~~~~~~~~l~r 685 (1089)
+.|+...+.... ..++|.+++.+.+.+..++.-++.+++.+...- +.....+. ++++.+.+ +.+
T Consensus 269 ~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~--------~~~~~~~~~~~~l~~L~~--lL~ 338 (528)
T 4b8j_A 269 SYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGD--------DAQTQCIIDHQALPCLLS--LLT 338 (528)
T ss_dssp HHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC--------HHHHHHHHTTTHHHHHHH--HHH
T ss_pred HHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCC--------HHHHHHHHHhhhHHHHHH--HHc
Confidence 999976654321 236788888888888889998888888876421 11111111 11222221 111
Q ss_pred CcchHHHHHHHHHHHHHhhhcCCCCchhhH-HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCcc--hhhhhHH
Q 001381 686 GKGGEIMRSAVSRFIECISLSFVSLPEKTK-RSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSG--VVGGISL 762 (1089)
Q Consensus 686 ~~~gelir~a~~~lI~~ls~~~lp~~~~~~-~~~~~~L~~~L~~~~~~V~~aAa~Al~~l~~~y~~~~~~~--~~~~~v~ 762 (1089)
.....-++..+|..+.+++....+...... ...+..|...|.+.+..++..|+.|+..+...-... ... .....++
T Consensus 339 ~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~-~~~~l~~~~~i~ 417 (528)
T 4b8j_A 339 QNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHD-QIKYLVSEGCIK 417 (528)
T ss_dssp SCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHH-HHHHHHHTTCHH
T ss_pred CCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHH-HHHHHHHCCCHH
Confidence 111356777888888888742210000011 122334444556678999999999999886531000 000 0146788
Q ss_pred HHHHHhCCCChhhhhhHHHHhhccchHhhh---------hhHHHH------HHHHhhhccccCCCCCCCHHHHHHHHHHH
Q 001381 763 KYMEQLTDPNPAIRRGSALALGVLPYELLA---------NSWRDV------LLKLCSCCLIEENPEDRDTEARVNAVRGL 827 (1089)
Q Consensus 763 ~~~~~L~s~~~~~r~G~a~aLG~lp~~~~~---------~~~~~i------~~~L~~~~~~~~~~~~~d~e~R~~al~sL 827 (1089)
.+++.|.+.++..+.....+|+.+-..-.. ..+... ++.|.... ...+.+.+..|...|
T Consensus 418 ~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~------~~~~~~v~~~a~~il 491 (528)
T 4b8j_A 418 PLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQ------SHDNNEIYEKAVKIL 491 (528)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGG------GCSSHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHH------cCCCHHHHHHHHHHH
Confidence 888888888888888777777766322111 001111 22222221 345678888888877
Q ss_pred HHHH
Q 001381 828 VSVC 831 (1089)
Q Consensus 828 ~~i~ 831 (1089)
..++
T Consensus 492 ~~~~ 495 (528)
T 4b8j_A 492 EAYW 495 (528)
T ss_dssp HHHC
T ss_pred HHHC
Confidence 7754
No 21
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=98.64 E-value=8.7e-06 Score=99.79 Aligned_cols=506 Identities=14% Similarity=0.054 Sum_probs=274.1
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHHHhhhCcc--h--hhhHHHHHHhhcCCCCCCcchHHHHHHHHHHHhcCCCCCCc
Q 001381 385 IIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSS--L--SEEVFSSVLELFSPGEGDGSWHGGCLALAELARRGLLLPSS 460 (1089)
Q Consensus 385 iI~~ll~~L~d~dt~vR~saAK~l~rI~~~L~~~--~--a~~vi~~il~~l~~~~~~~~wHg~~LaLael~~~~ll~p~~ 460 (1089)
.|+.|...|.+.++.+|..|++.|++++..-+.. + ...+++.+++.+...++......++-+|..|+...- .-..
T Consensus 15 ~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~-~~~~ 93 (644)
T 2z6h_A 15 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHRE-GLLA 93 (644)
T ss_dssp THHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHH-HHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChh-hHHH
Confidence 4566666777899999999999999999875432 1 236888899888654333333445666666654310 0000
Q ss_pred c--cchHHHHHHhhhhhccccccCCChhhhhhhhHHHHHhhhccCccchhHHHHHHHHHHHHHHhcCCCchhhHHHHHHH
Q 001381 461 L--PKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAAAAAF 538 (1089)
Q Consensus 461 l--~~il~~i~~~L~f~~r~~~~svG~~VRDAacfi~WslaR~~~~~~l~~~~~~l~~~Ll~~alfD~e~~iRRaAsAAl 538 (1089)
+ ..++|.+.+.|.-+ ...||-.|+.+++.++..... .-..+.+.=+...++..+-+++..+|.++..+|
T Consensus 94 i~~~g~i~~Lv~lL~~~--------~~~v~~~A~~aL~nL~~~~~~-~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L 164 (644)
T 2z6h_A 94 IFKSGGIPALVKMLGSP--------VDSVLFYAITTLHNLLLHQEG-AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCL 164 (644)
T ss_dssp HHTTTHHHHHHHHTTCS--------SHHHHHHHHHHHHHHHHHSTT-HHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHhCC--------CHHHHHHHHHHHHHHHhCcch-hHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHH
Confidence 1 23667776665322 267899999999999987643 122233344555666777888888888888788
Q ss_pred HHHhc----------ccCCCCCCccceecccccchhhhHHHHHHHHHHHHhhhcchHH-----HHHHHHhCccCCCCHHH
Q 001381 539 QENVG----------RQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYP-----FVDELLYNKICHWDKVL 603 (1089)
Q Consensus 539 QE~vG----------R~g~~p~GI~il~~~d~~~v~~r~~a~~~va~~va~~~~Y~~~-----li~~Ll~~~l~h~D~~i 603 (1089)
..+.- ..|.+|.=+.++...+. .....+-..+-..++..+..+.. .++.|+. .+.+.+..+
T Consensus 165 ~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~---~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~-ll~~~~~~~ 240 (644)
T 2z6h_A 165 QILAYGNQESKLIILASGGPQALVNIMRTYTY---EKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGL-HLTDPSQRL 240 (644)
T ss_dssp HHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCC---HHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHT-TTTCSCHHH
T ss_pred HHHHhcCcHHHHHHHHcCChHHHHHHHHcCCh---HHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHH-HHhcCCHHH
Confidence 76542 12222111122221111 11111111111112222233332 4556664 567779999
Q ss_pred HHHHHHHHHHHHccCchh-hHHHHHHHhccccCCCChhhHHHHHHHHHHHHHHHhcccccCChhHHH------HHHhhhH
Q 001381 604 RELAAEALSALVKYDPEY-FANFILEKLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPADKQK------IVAGIVP 676 (1089)
Q Consensus 604 R~laa~aL~~L~~~~~~~-~~~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~l~~~~~~~~~~~~~------~i~~i~~ 676 (1089)
|+.++.+|++|+...+.. ....++|.|++.+.+.+..+|.-++.+++.+... +++... .+..++.
T Consensus 241 ~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~--------~~~~~~~v~~~g~v~~Lv~ 312 (644)
T 2z6h_A 241 VQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN--------NYKNKMMVCQVGGIEALVR 312 (644)
T ss_dssp HHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT--------CHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--------CHHHHHHHHHcCCHHHHHH
Confidence 999999999999765431 2246788898888889999999888888877532 111111 1222222
Q ss_pred HHHhhhhccCcchHHHHHHHHHHHHHhhhcCCCCchh----hH-HHHHHHHHHhcCCCc-HHHHHHHHHHHHHHHHHhhh
Q 001381 677 GIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLPEK----TK-RSLLDTLNENLRHPN-SQIQNAAVKALKPFVQTYMV 750 (1089)
Q Consensus 677 ~~~~~~l~r~~~gelir~a~~~lI~~ls~~~lp~~~~----~~-~~~~~~L~~~L~~~~-~~V~~aAa~Al~~l~~~y~~ 750 (1089)
.+.+. ...+-+++.++..+..++... +-... +. ......|...|.++. ..++.+|+.++..+...
T Consensus 313 lL~~~-----~~~~~v~~~a~~aL~nL~~~~-~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~--- 383 (644)
T 2z6h_A 313 TVLRA-----GDREDITEPAICALRHLTSRH-QEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC--- 383 (644)
T ss_dssp HHHHH-----TTCHHHHHHHHHHHHHHTSSS-TTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS---
T ss_pred HHHcc-----CCcHHHHHHHHHHHHHHhcCC-chHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccC---
Confidence 22211 011467778888888876421 21111 11 123455666677765 68999998888776431
Q ss_pred ccCcc--hhhhhHHHHHHHhCCCChhhhhhHHHHhhccchHhhhhhHHHHHHHHhhhccccCCCCCCCHHHHHHHHHHHH
Q 001381 751 AADSG--VVGGISLKYMEQLTDPNPAIRRGSALALGVLPYELLANSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLV 828 (1089)
Q Consensus 751 ~~~~~--~~~~~v~~~~~~L~s~~~~~r~G~a~aLG~lp~~~~~~~~~~i~~~L~~~~~~~~~~~~~d~e~R~~al~sL~ 828 (1089)
..... .....++.+++.+++.+...|+-++.+++.-+ + .. ...+.+.+.+++.+|.
T Consensus 384 ~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~--------------~------~~--~~~~~~v~~~a~~aL~ 441 (644)
T 2z6h_A 384 PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQ--------------F------VE--GVRMEEIVEGCTGALH 441 (644)
T ss_dssp GGGHHHHHHTTHHHHHHHHHHHHHHHHTTC------------------------------CC--SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccch--------------h------cc--cccHHHHHHHHHHHHH
Confidence 10000 01344555555554444444444443332200 0 00 1124566777888887
Q ss_pred HHHhhhccccccccccCCcchhhhhhhhHHHHHHHHHHhcccCCCCCCCCcchHHHHHHHHHHHHHHHHhhccCCCCCCC
Q 001381 829 SVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEICTYILCKRDFVPSPE 908 (1089)
Q Consensus 829 ~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~L~DYT~D~RGDVGSwVR~aa~~~l~~l~~ll~~~~~~~~~~ 908 (1089)
.++..... ...+ .....++.|+..|.|- + .-||..|..++..+. . +
T Consensus 442 ~La~~~~~------------~~~l---~~~~~i~~Lv~lL~~~------~--~~v~~~a~~aL~~l~---~--~------ 487 (644)
T 2z6h_A 442 ILARDVHN------------RIVI---RGLNTIPLFVQLLYSP------I--ENIQRVAAGVLCELA---Q--D------ 487 (644)
T ss_dssp HHTTSHHH------------HHHH---HHTTCHHHHHHHTTCS------C--HHHHHHHHHHHHHHH---T--S------
T ss_pred HHhcCHHH------------HHHH---HhCCcHHHHHHHHcCC------C--HHHHHHHHHHHHHHH---c--C------
Confidence 66532100 0000 0123466777777552 2 248999999887763 1 0
Q ss_pred CCccccccCCCCccccccccCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhccCccCC-ccchHHHhhhcCCCcc
Q 001381 909 KPQEVKSELPGNVTAEKTLFDANLATNLVAGIVKQAVEKMDKLREAAAKVLRRILYNKTIFVP-IPHREKLEEIVPNEAD 987 (1089)
Q Consensus 909 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~llrq~~EkiD~vR~~A~~~L~~l~~~~~~~~~-~~~~~~L~~~f~~~~~ 987 (1089)
......+.. ...+..|.++.-.+-..||..|..+|..+..+...... .-..+-+..+|+.+ .
T Consensus 488 -------------~~~~~~i~~---~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~il~~~~~~~-~ 550 (644)
T 2z6h_A 488 -------------KEAAEAIEA---EGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTE-P 550 (644)
T ss_dssp -------------HHHHHHHHH---TTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSCCS-C
T ss_pred -------------HHHHHHHHH---cCChhHHHHHHcCCCHHHHHHHHHHHHHHhccCcHhhhcccchHHHHHHHhCC-C
Confidence 000111111 11234566666777889999999999998765410000 00133466677554 4
Q ss_pred cCcCCCC
Q 001381 988 LNWGVPA 994 (1089)
Q Consensus 988 ~~w~~~~ 994 (1089)
..|..+.
T Consensus 551 ~~w~~~~ 557 (644)
T 2z6h_A 551 MAWNETA 557 (644)
T ss_dssp GGGC---
T ss_pred ccccccc
Confidence 6787554
No 22
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.64 E-value=5.7e-06 Score=101.26 Aligned_cols=434 Identities=12% Similarity=0.088 Sum_probs=247.7
Q ss_pred hHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhCcchhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHHhcCCCCC
Q 001381 379 PDILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSLSEEVFSSVLELFSPGEGDGSWHGGCLALAELARRGLLLP 458 (1089)
Q Consensus 379 ~e~vE~iI~~ll~~L~d~dt~vR~saAK~l~rI~~~L~~~~a~~vi~~il~~l~~~~~~~~wHg~~LaLael~~~~ll~p 458 (1089)
||..--+++.|...|.|++..+|..|.+++|+|. .+++++.+++.+...+.+. ++.....++++++.+.+.. |
T Consensus 102 ~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~---~~~~~~~l~~~l~~~L~~~-~~~VRk~A~~al~~l~~~~---p 174 (618)
T 1w63_A 102 QDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMG---SSEMCRDLAGEVEKLLKTS-NSYLRKKAALCAVHVIRKV---P 174 (618)
T ss_dssp HHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHSC-CHHHHHHHHHHHHHHHHHC---G
T ss_pred cHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHC---h
Confidence 5777889999999999999999999999999998 4678889999999988653 3444567999999998854 5
Q ss_pred CcccchHHHHHHhhhhhccccccCCChhhhhhhhHHHHHhhhccCcc---chhHHHHHHHHHHHHHHh---c--------
Q 001381 459 SSLPKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHT---DMRNILEQIAPHLLTVAC---Y-------- 524 (1089)
Q Consensus 459 ~~l~~il~~i~~~L~f~~r~~~~svG~~VRDAacfi~WslaR~~~~~---~l~~~~~~l~~~Ll~~al---f-------- 524 (1089)
+.++.+++.+...|..+. ..|+-+|+.++..++... ++ .+.+.+..++. ++...+ +
T Consensus 175 ~~v~~~~~~l~~lL~D~d--------~~V~~~Al~~L~~i~~~~-~~~~~~~~~~v~~l~~-~L~~~~~~~~~~~~~~~~ 244 (618)
T 1w63_A 175 ELMEMFLPATKNLLNEKN--------HGVLHTSVVLLTEMCERS-PDMLAHFRKLVPQLVR-ILKNLIMSGYSPEHDVSG 244 (618)
T ss_dssp GGGGGGGGGTTTSTTCCC--------HHHHHHHHHHHHHHCCSH-HHHHHHHHTTHHHHHH-HHHHHHHSCCCTTTCSSS
T ss_pred HHHHHHHHHHHHHhCCCC--------HhHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHH-HHHHHHcCCCCccccccC
Confidence 666666666655443222 468888888877776542 21 11222222221 111111 0
Q ss_pred CCCchhhHHHHHHHHHHhcccCCC-CC----Cccceecc----cccchhhhHHH-HHHHHHHHHhh---hcchHHHHHHH
Q 001381 525 DREVNCRRAAAAAFQENVGRQGNY-PH----GIDIVNTA----DYFSLSSRVYS-YLHVAVFIAQY---EGYLYPFVDEL 591 (1089)
Q Consensus 525 D~e~~iRRaAsAAlQE~vGR~g~~-p~----GI~il~~~----d~~~v~~r~~a-~~~va~~va~~---~~Y~~~li~~L 591 (1089)
.++.-.+-... +++|+++.. |. -++++... +. ..+...+ ..+.+..+... +......++.|
T Consensus 245 ~~~~~~q~~il----~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~--~~~~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L 318 (618)
T 1w63_A 245 ISDPFLQVRIL----RLLRILGRNDDDSSEAMNDILAQVATNTET--SKNVGNAILYETVLTIMDIKSESGLRVLAINIL 318 (618)
T ss_dssp SSCHHHHHHHH----HHHHHHTTTCHHHHHTTHHHHHHHHHTSCC--SSTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred CCCChHHHHHH----HHHHHhCCCCHHHHHHHHHHHHHHHhcccc--ccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 11223333233 344444321 11 01111110 00 0011111 11223333332 12223355666
Q ss_pred HhCccCCCCHHHHHHHHHHHHHHHccCchhhHHHHHHHhccccCCCChhhHHHHHHHHHHHHHHHhcccccCChhHHHHH
Q 001381 592 LYNKICHWDKVLRELAAEALSALVKYDPEYFANFILEKLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPADKQKIV 671 (1089)
Q Consensus 592 l~~~l~h~D~~iR~laa~aL~~L~~~~~~~~~~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~l~~~~~~~~~~~~~~i 671 (1089)
.. .+.+.|.++|..|-.+|+.+....|..+. ...+.++.++.++|..+|--++-.+..+... ..-+..+
T Consensus 319 ~~-~L~~~d~~vr~~aL~~L~~i~~~~p~~~~-~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~------~nv~~iv--- 387 (618)
T 1w63_A 319 GR-FLLNNDKNIRYVALTSLLKTVQTDHNAVQ-RHRSTIVDCLKDLDVSIKRRAMELSFALVNG------NNIRGMM--- 387 (618)
T ss_dssp HH-HHTCSSTTTHHHHHHHHHHHHHHHHHHHG-GGHHHHHHGGGSSCHHHHHHHHHHHHHHCCS------SSTHHHH---
T ss_pred HH-HHhCCCCchHHHHHHHHHHHHhhCHHHHH-HHHHHHHHHccCCChhHHHHHHHHHHHHccc------ccHHHHH---
Confidence 54 47789999999999999999998876443 3456777888999999998766655555320 0011222
Q ss_pred HhhhHHHHhhhhccCcchHHHHHHHHHHHHHhhhcCCCCchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhc
Q 001381 672 AGIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLPEKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVA 751 (1089)
Q Consensus 672 ~~i~~~~~~~~l~r~~~gelir~a~~~lI~~ls~~~lp~~~~~~~~~~~~L~~~L~~~~~~V~~aAa~Al~~l~~~y~~~ 751 (1089)
..+...+.+ ...-+|..++..|..++....|.....++.+.+.+. .....+...+..++..++..+
T Consensus 388 ~eL~~~l~~-------~d~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~lL~----~~~~~v~~~~~~~l~~ii~~~--- 453 (618)
T 1w63_A 388 KELLYFLDS-------CEPEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLT----TAGSYVRDDAVPNLIQLITNS--- 453 (618)
T ss_dssp HHHHHHHHH-------CCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHH----HTGGGSCSSHHHHHHHHHHHS---
T ss_pred HHHHHHHHh-------CCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHH----hccchhHHHHHHHHHHHHhcC---
Confidence 222333222 123567777888888875322332334455555444 344556666777777777654
Q ss_pred cCcchhhhhHHHHHHHhCC--CChhhhhhHHHHhhccchHhhhh----------hHHHHHHHHhhhccccCCCCCCCHHH
Q 001381 752 ADSGVVGGISLKYMEQLTD--PNPAIRRGSALALGVLPYELLAN----------SWRDVLLKLCSCCLIEENPEDRDTEA 819 (1089)
Q Consensus 752 ~~~~~~~~~v~~~~~~L~s--~~~~~r~G~a~aLG~lp~~~~~~----------~~~~i~~~L~~~~~~~~~~~~~d~e~ 819 (1089)
.+.....+.++++.+.+ .+....+..+-.+|-+...+..+ .-..+++.|...+. . ...+.++
T Consensus 454 --p~l~~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~-~---~~~~~~v 527 (618)
T 1w63_A 454 --VEMHAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLI-S---NMSTSVT 527 (618)
T ss_dssp --CSTHHHHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHH-S---TTCCHHH
T ss_pred --hhHHHHHHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHh-c---cCCCHHH
Confidence 23335567777777642 23344456788888886544221 11123333322221 0 1246899
Q ss_pred HHHHHHHHHHHHhhhccccccccccCCcchhhhhhhhHHHHHHHHHHhcccCCCCCCCCcchHHHHHHHHHHHH
Q 001381 820 RVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEI 893 (1089)
Q Consensus 820 R~~al~sL~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~L~DYT~D~RGDVGSwVR~aa~~~l~~ 893 (1089)
|..++.++.+++.... ...+.+...|-.+.+|+..| ||.-|...+.-
T Consensus 528 r~~~lta~~Kl~~~~~-------------------~~~~~l~~~L~~~~~~~d~e--------vrdRA~~y~~l 574 (618)
T 1w63_A 528 RGYALTAIMKLSTRFT-------------------CTVNRIKKVVSIYGSSIDVE--------LQQRAVEYNAL 574 (618)
T ss_dssp HHHHHHHHHHHHTTCS-------------------SCHHHHHHHHHHHTTCSCHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCc-------------------chHHHHHHHHHHhcCCCCHH--------HHHHHHHHHHH
Confidence 9999999999875431 11223333344444444444 89999887653
No 23
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=98.60 E-value=2.5e-06 Score=101.72 Aligned_cols=410 Identities=13% Similarity=0.078 Sum_probs=230.7
Q ss_pred chHHHHHHhhhhhccccccCCChhhhhhhhHHHHHhhhccCccchhHHHHHHHHHHHHHHhcCC-CchhhHHHHHHHHHH
Q 001381 463 KVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDR-EVNCRRAAAAAFQEN 541 (1089)
Q Consensus 463 ~il~~i~~~L~f~~r~~~~svG~~VRDAacfi~WslaR~~~~~~l~~~~~~l~~~Ll~~alfD~-e~~iRRaAsAAlQE~ 541 (1089)
..+|.+...|.-+ -..+|-.|+..+..++..........++..-+...++..+-++ +..+|..|..+|..+
T Consensus 87 ~~i~~lv~~L~s~--------~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l 158 (530)
T 1wa5_B 87 QELPQMTQQLNSD--------DMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNI 158 (530)
T ss_dssp CCHHHHHHHHSCS--------SHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC--------CHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 3456665555211 1456777777666665543322233344433445556777776 789999999998776
Q ss_pred hcccCCCCCCccceecccccchhhhHHHHHHHHHHHHhhhcchHHHHHHHHhCccCCCCHHHHHHHHHHHHHHHccCchh
Q 001381 542 VGRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNKICHWDKVLRELAAEALSALVKYDPEY 621 (1089)
Q Consensus 542 vGR~g~~p~GI~il~~~d~~~v~~r~~a~~~va~~va~~~~Y~~~li~~Ll~~~l~h~D~~iR~laa~aL~~L~~~~~~~ 621 (1089)
..-.. +....+.. ....+.++.- +.+.|..+|+.|+.+|++|+...++.
T Consensus 159 ~~~~~-------------------------~~~~~~~~-~g~i~~Lv~l-----L~~~~~~vr~~A~~aL~~l~~~~~~~ 207 (530)
T 1wa5_B 159 ASGTS-------------------------AQTKVVVD-ADAVPLFIQL-----LYTGSVEVKEQAIWALGNVAGDSTDY 207 (530)
T ss_dssp TTSCH-------------------------HHHHHHHH-TTCHHHHHHH-----HHHCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred hCCCH-------------------------HHHHHHHH-CCCHHHHHHH-----HcCCCHHHHHHHHHHHHHHhCCCccc
Confidence 43110 00011111 1223344433 33579999999999999999765542
Q ss_pred h----HHHHHHHhccccCCCChhhHHHHHHHHHHHHHHHhcccccCChhHHHHHHhhhHHHHhhhhccCcchHHHHHHHH
Q 001381 622 F----ANFILEKLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPADKQKIVAGIVPGIEKARLYRGKGGEIMRSAVS 697 (1089)
Q Consensus 622 ~----~~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~l~~~~~~~~~~~~~~i~~i~~~~~~~~l~r~~~gelir~a~~ 697 (1089)
- ...++|.|+..+.+.+..++..++.+++.+...- .+... ......+++.+.+ +.+. +.+-++..+|
T Consensus 208 ~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~----~~~~~--~~~~~~~l~~L~~--lL~~-~d~~v~~~a~ 278 (530)
T 1wa5_B 208 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGK----KPQPD--WSVVSQALPTLAK--LIYS-MDTETLVDAC 278 (530)
T ss_dssp HHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCS----SSCCC--HHHHGGGHHHHHH--HTTC-CCHHHHHHHH
T ss_pred hHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCC----CCCCc--HHHHHhHHHHHHH--HHcC-CCHHHHHHHH
Confidence 1 1246778888887788888888888888876321 01111 1122334444432 1221 2356778888
Q ss_pred HHHHHhhhcCCCCchhhH-HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCcchhhhhHHHHHHHhCCCChhhh
Q 001381 698 RFIECISLSFVSLPEKTK-RSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLTDPNPAIR 776 (1089)
Q Consensus 698 ~lI~~ls~~~lp~~~~~~-~~~~~~L~~~L~~~~~~V~~aAa~Al~~l~~~y~~~~~~~~~~~~v~~~~~~L~s~~~~~r 776 (1089)
..+..++...-+....+. ......|...|.+++..++..|..++..+....-..........+++.+++.|++.++..|
T Consensus 279 ~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr 358 (530)
T 1wa5_B 279 WAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIK 358 (530)
T ss_dssp HHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHH
Confidence 888888742211001111 1334556667789999999999999887753100000000013677888888888889999
Q ss_pred hhHHHHhhccchHh---hhhhH-HHHHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHhhhccccccccccCCcchhhh
Q 001381 777 RGSALALGVLPYEL---LANSW-RDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQSQENSLIHSGEDEISL 852 (1089)
Q Consensus 777 ~G~a~aLG~lp~~~---~~~~~-~~i~~~L~~~~~~~~~~~~~d~e~R~~al~sL~~i~~~~g~~~~~~~~~~~~~~~~~ 852 (1089)
..++.+||.+.... ....+ ..++..|+..+. ..+.+.|..|+.+|..++...+.. +.. ...+
T Consensus 359 ~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~------~~~~~v~~~a~~aL~~l~~~~~~~--~~~------~~~l 424 (530)
T 1wa5_B 359 KEACWTISNITAGNTEQIQAVIDANLIPPLVKLLE------VAEYKTKKEACWAISNASSGGLQR--PDI------IRYL 424 (530)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHH------HSCHHHHHHHHHHHHHHHHHTTTC--THH------HHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHh------cCCHHHHHHHHHHHHHHHhcCCCc--HHH------HHHH
Confidence 99999999885321 11001 123444544432 246799999999999987532110 000 0011
Q ss_pred hhhhHHHHHHHHHHhcccCCCCCCCCcchHHHHHHHHHHHHHHHHhhccCCCCCCCCCccccccCCCCccccccccCHHH
Q 001381 853 FHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEICTYILCKRDFVPSPEKPQEVKSELPGNVTAEKTLFDANL 932 (1089)
Q Consensus 853 ~~~~~~~i~~~Ll~~L~DYT~D~RGDVGSwVR~aa~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 932 (1089)
.-..+++.|+..+++- -.-||..|+.+|..++..-.... .......+ ..
T Consensus 425 ---~~~~~l~~L~~ll~~~--------~~~v~~~al~aL~~l~~~~~~~~-------------------~~~~~~~~-~~ 473 (530)
T 1wa5_B 425 ---VSQGCIKPLCDLLEIA--------DNRIIEVTLDALENILKMGEADK-------------------EARGLNIN-EN 473 (530)
T ss_dssp ---HHTTCHHHHHHHTTTC--------CHHHHHHHHHHHHHHHHHHHHHH-------------------HHHTCSSC-HH
T ss_pred ---HHCCCHHHHHHHHhCC--------CHHHHHHHHHHHHHHHHhhhhhh-------------------hccccccc-HH
Confidence 1123677788888652 24599999999988753221000 00000001 11
Q ss_pred HHH-----HHHHHHHHhhhhhHHHHHHHHHHHHHHhhc
Q 001381 933 ATN-----LVAGIVKQAVEKMDKLREAAAKVLRRILYN 965 (1089)
Q Consensus 933 ~~~-----l~~~llrq~~EkiD~vR~~A~~~L~~l~~~ 965 (1089)
... .+..|..+..-.-..||..|..+|.+++..
T Consensus 474 ~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~ 511 (530)
T 1wa5_B 474 ADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGE 511 (530)
T ss_dssp HHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCc
Confidence 111 234455555556677888888888887654
No 24
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=98.52 E-value=1.3e-05 Score=95.39 Aligned_cols=349 Identities=14% Similarity=0.090 Sum_probs=214.9
Q ss_pred HHHHhcCCCchhhHHHHHHHHHHhcccCCCCCCccceecccccchhhhHHHHHHHHHHHHhhhcchHHHHHHHHhCccCC
Q 001381 519 LTVACYDREVNCRRAAAAAFQENVGRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNKICH 598 (1089)
Q Consensus 519 l~~alfD~e~~iRRaAsAAlQE~vGR~g~~p~GI~il~~~d~~~v~~r~~a~~~va~~va~~~~Y~~~li~~Ll~~~l~h 598 (1089)
++..+.+.+..+|..|..+|..++.+...-+ + ..+.. ..+++.|+. .+.+
T Consensus 79 lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~--~----------------------~~~~~-----~g~v~~Lv~-lL~~ 128 (528)
T 4b8j_A 79 MIGGVYSDDNNLQLEATTQFRKLLSIERSPP--I----------------------EEVIQ-----SGVVPRFVQ-FLTR 128 (528)
T ss_dssp HHHHHTSSCHHHHHHHHHHHHHHHTCSSSCC--H----------------------HHHHH-----TTCHHHHHH-HHTC
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhcCCCCch--H----------------------HHHHH-----CCCHHHHHH-HhCC
Confidence 4466678889999999999988865543211 0 00000 113344443 3445
Q ss_pred CC-HHHHHHHHHHHHHHHccCchhhH----HHHHHHhccccCCCChhhHHHHHHHHHHHHHHHhcccccCChhHHHHHH-
Q 001381 599 WD-KVLRELAAEALSALVKYDPEYFA----NFILEKLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPADKQKIVA- 672 (1089)
Q Consensus 599 ~D-~~iR~laa~aL~~L~~~~~~~~~----~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~l~~~~~~~~~~~~~~i~- 672 (1089)
.| ..+|..|+.+|++++...++... ...+|.|++.+.+.+..+|..++.+|+.+... ++.....+.
T Consensus 129 ~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~--------~~~~~~~i~~ 200 (528)
T 4b8j_A 129 EDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGD--------SPKCRDLVLA 200 (528)
T ss_dssp TTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHT--------CHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCC--------ChhhHHHHHH
Confidence 55 99999999999999987665322 24788888888888999999999999988632 111111111
Q ss_pred -hhhHHHHhhhhccCcchHHHHHHHHHHHHHhhhcCCCCchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhc
Q 001381 673 -GIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLPEKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVA 751 (1089)
Q Consensus 673 -~i~~~~~~~~l~r~~~gelir~a~~~lI~~ls~~~lp~~~~~~~~~~~~L~~~L~~~~~~V~~aAa~Al~~l~~~y~~~ 751 (1089)
+.++.+.+ +.+.....-++..++..+..++..............+..|...|.+.+..++..|+.++..+...
T Consensus 201 ~g~l~~Ll~--lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~---- 274 (528)
T 4b8j_A 201 NGALLPLLA--QLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDG---- 274 (528)
T ss_dssp TTCHHHHHH--TCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSS----
T ss_pred CCcHHHHHH--HHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcC----
Confidence 23333332 22112334567777888888876431112223344556666778999999999999998876421
Q ss_pred cCcch-----hhhhHHHHHHHhCCCChhhhhhHHHHhhccchHhhh--hh-H-HHHHHHHhhhccccCCCCCCCHHHHHH
Q 001381 752 ADSGV-----VGGISLKYMEQLTDPNPAIRRGSALALGVLPYELLA--NS-W-RDVLLKLCSCCLIEENPEDRDTEARVN 822 (1089)
Q Consensus 752 ~~~~~-----~~~~v~~~~~~L~s~~~~~r~G~a~aLG~lp~~~~~--~~-~-~~i~~~L~~~~~~~~~~~~~d~e~R~~ 822 (1089)
.... ....++.+++.|++.++..+..++.+||.+...... .. + ..++..|+..+. ...+...|..
T Consensus 275 -~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~-----~~~~~~v~~~ 348 (528)
T 4b8j_A 275 -TNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLT-----QNLKKSIKKE 348 (528)
T ss_dssp -CHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHH-----SCCCHHHHHH
T ss_pred -CHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHc-----CCCcHHHHHH
Confidence 1111 135788899999888888999999999888642110 00 0 123445555542 1126899999
Q ss_pred HHHHHHHHHhhhccccccccccCCcchhhhhhhhHHHHHHHHHHhcccCCCCCCCCcchHHHHHHHHHHHHHHHHhhccC
Q 001381 823 AVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEICTYILCKRD 902 (1089)
Q Consensus 823 al~sL~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~L~DYT~D~RGDVGSwVR~aa~~~l~~l~~ll~~~~ 902 (1089)
|+.+|+.++. +.. . ....-....+++.|+..|.+- -..||..|+.+|..+..--
T Consensus 349 A~~~L~nl~~--~~~---~---------~~~~~~~~~~i~~L~~lL~~~--------~~~v~~~a~~aL~nl~~~~---- 402 (528)
T 4b8j_A 349 ACWTISNITA--GNK---D---------QIQAVINAGIIGPLVNLLQTA--------EFDIKKEAAWAISNATSGG---- 402 (528)
T ss_dssp HHHHHHHHHT--SCH---H---------HHHHHHHTTCHHHHHHHHHHS--------CHHHHHHHHHHHHHHHHHS----
T ss_pred HHHHHHHHHC--CCH---H---------HHHHHHHCCCHHHHHHHHhcC--------CHHHHHHHHHHHHHHHcCC----
Confidence 9999999864 110 0 000001123556677776542 2469999999998774110
Q ss_pred CCCCCCCCccccccCCCCccccccccCHHHH-HHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhc
Q 001381 903 FVPSPEKPQEVKSELPGNVTAEKTLFDANLA-TNLVAGIVKQAVEKMDKLREAAAKVLRRILYN 965 (1089)
Q Consensus 903 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~llrq~~EkiD~vR~~A~~~L~~l~~~ 965 (1089)
.+... ..++ ..++..|++..-.+-+++|..|..+|..++..
T Consensus 403 ---------------------~~~~~-~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~ 444 (528)
T 4b8j_A 403 ---------------------SHDQI-KYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKV 444 (528)
T ss_dssp ---------------------CHHHH-HHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred ---------------------CHHHH-HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 00000 0111 23456677777778889999999999999764
No 25
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=98.49 E-value=2.4e-05 Score=92.28 Aligned_cols=453 Identities=12% Similarity=0.024 Sum_probs=247.3
Q ss_pred HHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhCcc--hh--hhHHHHHHhhcCCCCCCcchHHHHHHHHHHHhcCCC
Q 001381 381 ILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSS--LS--EEVFSSVLELFSPGEGDGSWHGGCLALAELARRGLL 456 (1089)
Q Consensus 381 ~vE~iI~~ll~~L~d~dt~vR~saAK~l~rI~~~L~~~--~a--~~vi~~il~~l~~~~~~~~wHg~~LaLael~~~~ll 456 (1089)
.-...|+.|...|.+.++.+|..|++.|++++..-+.. .. ...++.+++.+....+......++-+|..++...-
T Consensus 14 ~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~- 92 (529)
T 1jdh_A 14 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHRE- 92 (529)
T ss_dssp ---CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHH-
T ss_pred hhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCch-
Confidence 34556777888888999999999999999998653321 11 25788888887543233333456777777654310
Q ss_pred CCCcc--cchHHHHHHhhhhhccccccCCChhhhhhhhHHHHHhhhccCccchhHHHHHHHHHHHHHHhcCCCchhhHHH
Q 001381 457 LPSSL--PKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAA 534 (1089)
Q Consensus 457 ~p~~l--~~il~~i~~~L~f~~r~~~~svG~~VRDAacfi~WslaR~~~~~~l~~~~~~l~~~Ll~~alfD~e~~iRRaA 534 (1089)
....+ ...+|.+.+.|.-+ ...||..|+.++|.++..... .-..+.+.=+...++..+-+++..+|..+
T Consensus 93 ~~~~i~~~g~i~~L~~lL~~~--------~~~v~~~a~~~L~~l~~~~~~-~~~~i~~~g~i~~L~~ll~~~~~~~~~~~ 163 (529)
T 1jdh_A 93 GLLAIFKSGGIPALVKMLGSP--------VDSVLFYAITTLHNLLLHQEG-AKMAVRLAGGLQKMVALLNKTNVKFLAIT 163 (529)
T ss_dssp HHHHHHHTTHHHHHHHHTTCS--------CHHHHHHHHHHHHHHHHHCTT-HHHHHHHHTHHHHHHHGGGCCCHHHHHHH
T ss_pred hHHHHHHcCCHHHHHHHHcCC--------CHHHHHHHHHHHHHHhcCCcc-hHHHHHHcCCHHHHHHHHhcCCHHHHHHH
Confidence 00001 23567776665322 267899999999999876542 11223334455566678888899999999
Q ss_pred HHHHHHHhc----------ccCCCCCCccceecccccchhhhHHHHHHHHHHHHhhhcchH-----HHHHHHHhCccCCC
Q 001381 535 AAAFQENVG----------RQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLY-----PFVDELLYNKICHW 599 (1089)
Q Consensus 535 sAAlQE~vG----------R~g~~p~GI~il~~~d~~~v~~r~~a~~~va~~va~~~~Y~~-----~li~~Ll~~~l~h~ 599 (1089)
..+|..+.- ..|.+|.=+.++..-+ -..+..+-..+-..++..+.... ..++.|+. .+.+.
T Consensus 164 ~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~-ll~~~ 239 (529)
T 1jdh_A 164 TDCLQILAYGNQESKLIILASGGPQALVNIMRTYT---YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGL-HLTDP 239 (529)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCC---CHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHT-TTTSS
T ss_pred HHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCC---hHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHH-HHhCC
Confidence 888875432 1121111111121111 11111111111111222222222 24566664 56777
Q ss_pred CHHHHHHHHHHHHHHHccCchh-hHHHHHHHhccccCCCChhhHHHHHHHHHHHHHHHhcccccCChhHHH------HHH
Q 001381 600 DKVLRELAAEALSALVKYDPEY-FANFILEKLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPADKQK------IVA 672 (1089)
Q Consensus 600 D~~iR~laa~aL~~L~~~~~~~-~~~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~l~~~~~~~~~~~~~------~i~ 672 (1089)
+..+|+-++.+|+.|+...+.. ....++|.+++.+.+.+..+|..++.+++.+... +++... .+.
T Consensus 240 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~--------~~~~~~~~~~~~~v~ 311 (529)
T 1jdh_A 240 SQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN--------NYKNKMMVCQVGGIE 311 (529)
T ss_dssp CHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTT--------CHHHHHHHHHTTHHH
T ss_pred ChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcC--------CHHHHHHHHHcCChH
Confidence 9999999999999999765432 2246788998888889999999888888877431 111111 112
Q ss_pred hhhHHHHhhhhccCcchHHHHHHHHHHHHHhhhcCCCCch----hhH-HHHHHHHHHhcCCCc-HHHHHHHHHHHHHHHH
Q 001381 673 GIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLPE----KTK-RSLLDTLNENLRHPN-SQIQNAAVKALKPFVQ 746 (1089)
Q Consensus 673 ~i~~~~~~~~l~r~~~gelir~a~~~lI~~ls~~~lp~~~----~~~-~~~~~~L~~~L~~~~-~~V~~aAa~Al~~l~~ 746 (1089)
.++..+.+. ...+-+++.++..+.+++... |-.. .+. ......|...|.++. ..++..|+.++..+..
T Consensus 312 ~L~~ll~~~-----~~~~~v~~~a~~~L~nl~~~~-~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~ 385 (529)
T 1jdh_A 312 ALVRTVLRA-----GDREDITEPAICALRHLTSRH-QEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 385 (529)
T ss_dssp HHHHHHHHH-----TTCHHHHHHHHHHHHHHTSSS-TTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcc-----CCHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhc
Confidence 222222211 111457778888888876422 2211 111 112344556677776 5999999988877653
Q ss_pred HhhhccCcch--hhhhHHHHHHHhCCCChhhhhhHHHHhh----------------------ccchHhh-hhhH--HHHH
Q 001381 747 TYMVAADSGV--VGGISLKYMEQLTDPNPAIRRGSALALG----------------------VLPYELL-ANSW--RDVL 799 (1089)
Q Consensus 747 ~y~~~~~~~~--~~~~v~~~~~~L~s~~~~~r~G~a~aLG----------------------~lp~~~~-~~~~--~~i~ 799 (1089)
. ...... ...+++.+++.+++.++..|+.++.+++ .+-.... ...+ ..++
T Consensus 386 ~---~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v 462 (529)
T 1jdh_A 386 C---PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTI 462 (529)
T ss_dssp S---GGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCH
T ss_pred C---hhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCc
Confidence 1 100000 1356777777776555555554443333 2211000 0000 1123
Q ss_pred HHHhhhccccCCCCCCCHHHHHHHHHHHHHHHhhhccccccccccCCcchhhhhhhh-HHHHHHHHHHhcccCCCCCCCC
Q 001381 800 LKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLI-KNEVMTSLFKALDDYSVDNRGD 878 (1089)
Q Consensus 800 ~~L~~~~~~~~~~~~~d~e~R~~al~sL~~i~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~i~~~Ll~~L~DYT~D~RGD 878 (1089)
+.|+..+ ...+.+.|.+|..+|..+...- ...... -...++.|...+.|-.
T Consensus 463 ~~l~~ll------~~~~~~v~~~a~~~l~~l~~~~----------------~~~~~i~~~~~~~~L~~l~~~~~------ 514 (529)
T 1jdh_A 463 PLFVQLL------YSPIENIQRVAAGVLCELAQDK----------------EAAEAIEAEGATAPLTELLHSRN------ 514 (529)
T ss_dssp HHHHHGG------GCSCHHHHHHHHHHHHHHTTSH----------------HHHHHHHHTTCHHHHHHGGGCSS------
T ss_pred cHHHHHH------cCCchHHHHHHHHHHHHHhcCH----------------HHHHHHHHcCChHHHHHHhcCCC------
Confidence 4455544 2346789999999998864210 000000 1123466666665532
Q ss_pred cchHHHHHHHHHHHHH
Q 001381 879 VGSWVREAAVDGLEIC 894 (1089)
Q Consensus 879 VGSwVR~aa~~~l~~l 894 (1089)
.-||+.|..++..+
T Consensus 515 --~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 515 --EGVATYAAAVLFRM 528 (529)
T ss_dssp --HHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHhc
Confidence 33899999988654
No 26
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.46 E-value=1.3e-05 Score=87.06 Aligned_cols=254 Identities=17% Similarity=0.096 Sum_probs=158.1
Q ss_pred HHHHHHhhhhhccccccCCChhhhhhhhHHHHHhhhccCccchhHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHhcc
Q 001381 465 VPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAAAAAFQENVGR 544 (1089)
Q Consensus 465 l~~i~~~L~f~~r~~~~svG~~VRDAacfi~WslaR~~~~~~l~~~~~~l~~~Ll~~alfD~e~~iRRaAsAAlQE~vGR 544 (1089)
++.+.+.|.-+. ..||-.|+..+..+. ++. +...+...+-|++..+|+.|..+| |+
T Consensus 25 i~~L~~~L~~~~--------~~vr~~A~~~L~~~~---~~~---------~~~~L~~~l~d~~~~vR~~A~~aL----~~ 80 (280)
T 1oyz_A 25 DDELFRLLDDHN--------SLKRISSARVLQLRG---GQD---------AVRLAIEFCSDKNYIRRDIGAFIL----GQ 80 (280)
T ss_dssp HHHHHHHTTCSS--------HHHHHHHHHHHHHHC---CHH---------HHHHHHHHHTCSSHHHHHHHHHHH----HH
T ss_pred HHHHHHHHHcCC--------HHHHHHHHHHHHccC---Cch---------HHHHHHHHHcCCCHHHHHHHHHHH----HH
Confidence 556655553221 457877766655543 221 122345677888899999888886 44
Q ss_pred cCCCCCCccceecccccchhhhHHHHHHHHHHHHhhhcchHHHHHHHHhCccCCCCHHHHHHHHHHHHHHHccCchhhHH
Q 001381 545 QGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNKICHWDKVLRELAAEALSALVKYDPEYFAN 624 (1089)
Q Consensus 545 ~g~~p~GI~il~~~d~~~v~~r~~a~~~va~~va~~~~Y~~~li~~Ll~~~l~h~D~~iR~laa~aL~~L~~~~~~~~~~ 624 (1089)
.|.-+ .....+++.|....+.+.|..+|..++.+|+.+...++.+ ..
T Consensus 81 l~~~~--------------------------------~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~-~~ 127 (280)
T 1oyz_A 81 IKICK--------------------------------KCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIY-SP 127 (280)
T ss_dssp SCCCT--------------------------------TTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG-HH
T ss_pred hcccc--------------------------------ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcc-cH
Confidence 44321 1112234433322344889999999999999998766533 34
Q ss_pred HHHHHhccccCCCChhhHHHHHHHHHHHHHHHhcccccCChhHHHHHHhhhHHHHhhhhccCcchHHHHHHHHHHHHHhh
Q 001381 625 FILEKLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPADKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECIS 704 (1089)
Q Consensus 625 ~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~l~~~~~~~~~~~~~~i~~i~~~~~~~~l~r~~~gelir~a~~~lI~~ls 704 (1089)
.++|.+...+.+.+..+|..++.+++.+-. +..+..+ ...+. . ....+|.+++..++.+.
T Consensus 128 ~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~----------~~~~~~L---~~~l~------d-~~~~vr~~a~~aL~~~~ 187 (280)
T 1oyz_A 128 KIVEQSQITAFDKSTNVRRATAFAISVIND----------KATIPLL---INLLK------D-PNGDVRNWAAFAININK 187 (280)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHTC-------------CCHHHH---HHHHT------C-SSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhCCCHHHHHHHHHHHHhcCC----------HHHHHHH---HHHHc------C-CCHHHHHHHHHHHHhhc
Confidence 577888888899999999999998887532 1122221 22211 1 12357787777777664
Q ss_pred hcCCCCchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCcchhhhhHHHHHHHhCCCChhhhhhHHHHhh
Q 001381 705 LSFVSLPEKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLTDPNPAIRRGSALALG 784 (1089)
Q Consensus 705 ~~~lp~~~~~~~~~~~~L~~~L~~~~~~V~~aAa~Al~~l~~~y~~~~~~~~~~~~v~~~~~~L~s~~~~~r~G~a~aLG 784 (1089)
.. . ......+...+.+++..||..|+.++..+.. ...++.+++.+++.+ .|+.++.+||
T Consensus 188 ~~----~----~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~-----------~~~~~~L~~~l~d~~--vr~~a~~aL~ 246 (280)
T 1oyz_A 188 YD----N----SDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD-----------KRVLSVLCDELKKNT--VYDDIIEAAG 246 (280)
T ss_dssp CC----C----HHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC-----------GGGHHHHHHHHTSSS--CCHHHHHHHH
T ss_pred cC----c----HHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC-----------HhhHHHHHHHhcCcc--HHHHHHHHHH
Confidence 21 1 1234446666789999999999999876531 467788888887654 7888999999
Q ss_pred ccchHhhhhhHHHHHHHHhhhccccCCCCCCCHHHHHHHHHHHH
Q 001381 785 VLPYELLANSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLV 828 (1089)
Q Consensus 785 ~lp~~~~~~~~~~i~~~L~~~~~~~~~~~~~d~e~R~~al~sL~ 828 (1089)
.+... ..+..|..... ...+.+.+..+++.|.
T Consensus 247 ~i~~~-------~~~~~L~~~l~-----~~~~~~~~~~~~~~l~ 278 (280)
T 1oyz_A 247 ELGDK-------TLLPVLDTMLY-----KFDDNEIITSAIDKLK 278 (280)
T ss_dssp HHCCG-------GGHHHHHHHHT-----TSSCCHHHHHHHHHHT
T ss_pred hcCch-------hhhHHHHHHHh-----cCCCcHHHHHHHHHhh
Confidence 88642 12333433332 2345677777777664
No 27
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.40 E-value=6.9e-06 Score=89.40 Aligned_cols=223 Identities=15% Similarity=0.154 Sum_probs=151.4
Q ss_pred HHHHHhCccCCCCHHHHHHHHHHHHHHHccCchhhHHHHHHHhccccCCCChhhHHHHHHHHHHHHHHHhcccccCChhH
Q 001381 588 VDELLYNKICHWDKVLRELAAEALSALVKYDPEYFANFILEKLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPADK 667 (1089)
Q Consensus 588 i~~Ll~~~l~h~D~~iR~laa~aL~~L~~~~~~~~~~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~l~~~~~~~~~~~ 667 (1089)
++.|+. .+.+.|..+|..|+.+|+++.. ..++|.+++.+.+.+..+|..++.+++.+-. .+..
T Consensus 25 i~~L~~-~L~~~~~~vr~~A~~~L~~~~~-------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~---------~~~~ 87 (280)
T 1oyz_A 25 DDELFR-LLDDHNSLKRISSARVLQLRGG-------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKI---------CKKC 87 (280)
T ss_dssp HHHHHH-HTTCSSHHHHHHHHHHHHHHCC-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCC---------CTTT
T ss_pred HHHHHH-HHHcCCHHHHHHHHHHHHccCC-------chHHHHHHHHHcCCCHHHHHHHHHHHHHhcc---------cccc
Confidence 455554 5678999999999999999862 2367788888889999999999888876521 1122
Q ss_pred HHHHHhhhHH-HHhhhhccCcchHHHHHHHHHHHHHhhhcCCCCchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 001381 668 QKIVAGIVPG-IEKARLYRGKGGEIMRSAVSRFIECISLSFVSLPEKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQ 746 (1089)
Q Consensus 668 ~~~i~~i~~~-~~~~~l~r~~~gelir~a~~~lI~~ls~~~lp~~~~~~~~~~~~L~~~L~~~~~~V~~aAa~Al~~l~~ 746 (1089)
...+..++.. +.+ .....+|.+++..++.++... | .........+...+.+++..||.+|+.++..+..
T Consensus 88 ~~~l~~~L~~~~~~------d~~~~vr~~a~~aL~~l~~~~-~---~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 88 EDNVFNILNNMALN------DKSACVRATAIESTAQRCKKN-P---IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND 157 (280)
T ss_dssp HHHHHHHHHHHHHH------CSCHHHHHHHHHHHHHHHHHC-G---GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC--
T ss_pred chHHHHHHHHHHhc------CCCHHHHHHHHHHHHHHhccC-C---cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC
Confidence 2222222221 111 123467888888887765321 1 1123455567777899999999999999875432
Q ss_pred HhhhccCcchhhhhHHHHHHHhCCCChhhhhhHHHHhhccchHhhhhhHHHHHHHHhhhccccCCCCCCCHHHHHHHHHH
Q 001381 747 TYMVAADSGVVGGISLKYMEQLTDPNPAIRRGSALALGVLPYELLANSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRG 826 (1089)
Q Consensus 747 ~y~~~~~~~~~~~~v~~~~~~L~s~~~~~r~G~a~aLG~lp~~~~~~~~~~i~~~L~~~~~~~~~~~~~d~e~R~~al~s 826 (1089)
...++.+++.+++.++..|..++.+||.+... -..++..|+..+ .+.+.+.|..|+.+
T Consensus 158 -----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-----~~~~~~~L~~~l------~d~~~~vR~~A~~a 215 (280)
T 1oyz_A 158 -----------KATIPLLINLLKDPNGDVRNWAAFAININKYD-----NSDIRDCFVEML------QDKNEEVRIEAIIG 215 (280)
T ss_dssp ------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCC-----CHHHHHHHHHHT------TCSCHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccC-----cHHHHHHHHHHh------cCCCHHHHHHHHHH
Confidence 34678888888999999999999999987421 123455565554 35578999999999
Q ss_pred HHHHHhhhccccccccccCCcchhhhhhhhHHHHHHHHHHhcccCCCCCCCCcchHHHHHHHHHHHHH
Q 001381 827 LVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEIC 894 (1089)
Q Consensus 827 L~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~L~DYT~D~RGDVGSwVR~aa~~~l~~l 894 (1089)
|+.+. . ...++.|+..+.| +| ||..++.++..+
T Consensus 216 L~~~~----~---------------------~~~~~~L~~~l~d------~~----vr~~a~~aL~~i 248 (280)
T 1oyz_A 216 LSYRK----D---------------------KRVLSVLCDELKK------NT----VYDDIIEAAGEL 248 (280)
T ss_dssp HHHTT----C---------------------GGGHHHHHHHHTS------SS----CCHHHHHHHHHH
T ss_pred HHHhC----C---------------------HhhHHHHHHHhcC------cc----HHHHHHHHHHhc
Confidence 98742 1 1245666777766 23 799999998765
No 28
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.37 E-value=8.1e-06 Score=99.91 Aligned_cols=293 Identities=13% Similarity=0.088 Sum_probs=180.3
Q ss_pred HHHHHHHHHHHHhcCCCchhhHHHHHHHHHHhcccCCCCCCccceecccccchhhhHHHHHHHHHHHHhhhcchHHHHHH
Q 001381 511 LEQIAPHLLTVACYDREVNCRRAAAAAFQENVGRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDE 590 (1089)
Q Consensus 511 ~~~l~~~Ll~~alfD~e~~iRRaAsAAlQE~vGR~g~~p~GI~il~~~d~~~v~~r~~a~~~va~~va~~~~Y~~~li~~ 590 (1089)
+-.++.+.+...+-|++..+|-.|..++..+ +. | +..+.+++.
T Consensus 104 ~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i----~~-~--------------------------------~~~~~l~~~ 146 (618)
T 1w63_A 104 VHLLMTNCIKNDLNHSTQFVQGLALCTLGCM----GS-S--------------------------------EMCRDLAGE 146 (618)
T ss_dssp HHHHHHHHHHHHHSCSSSHHHHHHHHHHHHH----CC-H--------------------------------HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHhHHHHHHHHHHhc----CC-H--------------------------------HHHHHHHHH
Confidence 3346777778888999999999988886443 32 1 112334444
Q ss_pred HHhCccCCCCHHHHHHHHHHHHHHHccCchhhHHHHHHHhccccCCCChhhHHHHHHHHHHHHHHHhcccccCChhHHHH
Q 001381 591 LLYNKICHWDKVLRELAAEALSALVKYDPEYFANFILEKLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPADKQKI 670 (1089)
Q Consensus 591 Ll~~~l~h~D~~iR~laa~aL~~L~~~~~~~~~~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~l~~~~~~~~~~~~~~ 670 (1089)
+.. .+.|.++.+|+-|+.|++++...+|+.+ ...++.+.+.+.+.|..++.+++.++.++... +++....
T Consensus 147 l~~-~L~~~~~~VRk~A~~al~~l~~~~p~~v-~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~--------~~~~~~~ 216 (618)
T 1w63_A 147 VEK-LLKTSNSYLRKKAALCAVHVIRKVPELM-EMFLPATKNLLNEKNHGVLHTSVVLLTEMCER--------SPDMLAH 216 (618)
T ss_dssp HHH-HHHSCCHHHHHHHHHHHHHHHHHCGGGG-GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCS--------HHHHHHH
T ss_pred HHH-HHcCCCHHHHHHHHHHHHHHHHHChHHH-HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHh--------ChHHHHH
Confidence 443 5668999999999999999999999754 35778888888888999999898888887521 1111122
Q ss_pred HHhhhHHHHh------------hhhccCcchHHHHHHHHHHHHHhhhcCCCCchhhHHHHHHHHH--HhcCCCcHHHHHH
Q 001381 671 VAGIVPGIEK------------ARLYRGKGGEIMRSAVSRFIECISLSFVSLPEKTKRSLLDTLN--ENLRHPNSQIQNA 736 (1089)
Q Consensus 671 i~~i~~~~~~------------~~l~r~~~gelir~a~~~lI~~ls~~~lp~~~~~~~~~~~~L~--~~L~~~~~~V~~a 736 (1089)
+..+++.+.+ .-.|.|...+.+...+.++++.++...........+.+..++. +.+++.+..|..+
T Consensus 217 ~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~e 296 (618)
T 1w63_A 217 FRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYE 296 (618)
T ss_dssp HHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHHHH
Confidence 2233332221 1113334567887778888877764221101112222222222 1235566778887
Q ss_pred HHHHHHHHHHHhhhccCcchhhhhHHHHHHHhCCCChhhhhhHHHHhhccchH---hhhhhHHHHHHHHhhhccccCCCC
Q 001381 737 AVKALKPFVQTYMVAADSGVVGGISLKYMEQLTDPNPAIRRGSALALGVLPYE---LLANSWRDVLLKLCSCCLIEENPE 813 (1089)
Q Consensus 737 Aa~Al~~l~~~y~~~~~~~~~~~~v~~~~~~L~s~~~~~r~G~a~aLG~lp~~---~~~~~~~~i~~~L~~~~~~~~~~~ 813 (1089)
|+.++..+ .. ........++.+.+.+.+.++..|.-+..+|+.+-.. .+.+....++.+| .
T Consensus 297 a~~~i~~l-----~~-~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~~l----------~ 360 (618)
T 1w63_A 297 TVLTIMDI-----KS-ESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVDCL----------K 360 (618)
T ss_dssp HHHHHHHS-----CC-CHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGGHHHHHHGG----------G
T ss_pred HHHHHHhc-----CC-CHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHHHHHHHHHHHc----------c
Confidence 77776442 11 1111123455666667777788888777777766422 2233333444333 4
Q ss_pred CCCHHHHHHHHHHHHHHHhhhccccccccccCCcchhhhhhhhHHHHHHHHHHhcccCCCCCCCCcchHHHHHHHHHHHH
Q 001381 814 DRDTEARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEI 893 (1089)
Q Consensus 814 ~~d~e~R~~al~sL~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~L~DYT~D~RGDVGSwVR~aa~~~l~~ 893 (1089)
+.|...|+.|+..|..++.. .+++.+++.|+..+.+- ...+|..++.+|..
T Consensus 361 d~d~~Ir~~alelL~~l~~~---------------------~nv~~iv~eL~~~l~~~--------d~e~r~~~v~~I~~ 411 (618)
T 1w63_A 361 DLDVSIKRRAMELSFALVNG---------------------NNIRGMMKELLYFLDSC--------EPEFKADCASGIFL 411 (618)
T ss_dssp SSCHHHHHHHHHHHHHHCCS---------------------SSTHHHHHHHHHHHHHC--------CHHHHHHHHHHHHH
T ss_pred CCChhHHHHHHHHHHHHccc---------------------ccHHHHHHHHHHHHHhC--------CHHHHHHHHHHHHH
Confidence 56789999999999887531 23455666676666542 23589999999988
Q ss_pred HH
Q 001381 894 CT 895 (1089)
Q Consensus 894 l~ 895 (1089)
+.
T Consensus 412 la 413 (618)
T 1w63_A 412 AA 413 (618)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 29
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=98.36 E-value=2.4e-05 Score=93.32 Aligned_cols=358 Identities=14% Similarity=0.129 Sum_probs=206.9
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHHHhhhCcchhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHHhcCCCCCCcccchH
Q 001381 386 IEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSLSEEVFSSVLELFSPGEGDGSWHGGCLALAELARRGLLLPSSLPKVV 465 (1089)
Q Consensus 386 I~~ll~~L~d~dt~vR~saAK~l~rI~~~L~~~~a~~vi~~il~~l~~~~~~~~wHg~~LaLael~~~~ll~p~~l~~il 465 (1089)
|+.++..+++.|..++..|++++-|+.++=...-.++| ...| ++
T Consensus 59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~i---------------------------i~~G---------~i 102 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNI---------------------------IRAG---------LI 102 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHH---------------------------HHTT---------HH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHH---------------------------HHCC---------CH
Confidence 56677789999999999999999998765321111111 1222 35
Q ss_pred HHHHHhhhhhccccccCCChhhhhhhhHHHHHhhhccCccchhHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHhccc
Q 001381 466 PVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAAAAAFQENVGRQ 545 (1089)
Q Consensus 466 ~~i~~~L~f~~r~~~~svG~~VRDAacfi~WslaR~~~~~~l~~~~~~l~~~Ll~~alfD~e~~iRRaAsAAlQE~vGR~ 545 (1089)
|.+++.|.... -..++-.|+.++|.+|.. +++.-+.+++.=+...++..+-+++..+|+.|..||..+.+-.
T Consensus 103 p~LV~lL~~~~-------~~~lq~~Aa~aL~nias~-~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~ 174 (510)
T 3ul1_B 103 PKFVSFLGKTD-------CSPIQFESAWALTNIASG-TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDG 174 (510)
T ss_dssp HHHHHHTTCTT-------CHHHHHHHHHHHHHHHTS-CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCC-------CHHHHHHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC
Confidence 66555552111 134677788888888754 2233334455446667778889999999999999987765421
Q ss_pred CCCCCCccceecccccchhhhHHHHHHHHHHHHhhhcchHHHHHHHHhCccCCCCHHHHHHHHHHHHHHHccCc----hh
Q 001381 546 GNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNKICHWDKVLRELAAEALSALVKYDP----EY 621 (1089)
Q Consensus 546 g~~p~GI~il~~~d~~~v~~r~~a~~~va~~va~~~~Y~~~li~~Ll~~~l~h~D~~iR~laa~aL~~L~~~~~----~~ 621 (1089)
.. ....+.+. .-..+++..|-..........+.+.++.+|..++.... ..
T Consensus 175 ~~-------------------------~r~~v~~~-G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~ 228 (510)
T 3ul1_B 175 SA-------------------------FRDLVIKH-GAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLD 228 (510)
T ss_dssp HH-------------------------HHHHHHHT-TCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHH
T ss_pred HH-------------------------HHHHHHHc-CChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHH
Confidence 00 00011111 11223333222222223345667778888888886432 12
Q ss_pred hHHHHHHHhccccCCCChhhHHHHHHHHHHHHHHHhcccccCChhHHHHHH--hhhHHHHhhhhccCcchHHHHHHHHHH
Q 001381 622 FANFILEKLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPADKQKIVA--GIVPGIEKARLYRGKGGEIMRSAVSRF 699 (1089)
Q Consensus 622 ~~~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~l~~~~~~~~~~~~~~i~--~i~~~~~~~~l~r~~~gelir~a~~~l 699 (1089)
....++|.|...+.+.+..++.-++.+++.+... .++....+. ++++.+.+ +.+. +..-++..+++.
T Consensus 229 ~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~--------~~~~~~~i~~~g~i~~Lv~--lL~~-~~~~v~~~al~a 297 (510)
T 3ul1_B 229 AVEQILPTLVRLLHHNDPEVLADSCWAISYLTDG--------PNERIEMVVKKGVVPQLVK--LLGA-TELPIVTPALRA 297 (510)
T ss_dssp HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS--------CHHHHHHHHTTTCHHHHHH--HHTC-SCHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhc--------hhhhHHHHHhcccchhhhh--hhcC-CChhhhhHHHHH
Confidence 2356788888888888888888888888776532 111111110 12222211 1111 223466677777
Q ss_pred HHHhhhcCCCCchhhH-HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCcc--hhhhhHHHHHHHhCCCChhhh
Q 001381 700 IECISLSFVSLPEKTK-RSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSG--VVGGISLKYMEQLTDPNPAIR 776 (1089)
Q Consensus 700 I~~ls~~~lp~~~~~~-~~~~~~L~~~L~~~~~~V~~aAa~Al~~l~~~y~~~~~~~--~~~~~v~~~~~~L~s~~~~~r 776 (1089)
+.+++...-.....+. ......+...|.++++.|+..|+.++..+...- ..... ....+++.+++.+++.+...+
T Consensus 298 L~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~--~~~~~~v~~~g~i~~Lv~lL~~~~~~v~ 375 (510)
T 3ul1_B 298 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGR--QDQIQQVVNHGLVPFLVGVLSKADFKTQ 375 (510)
T ss_dssp HHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSC--HHHHHHHHHTTHHHHHHHHHHSSCHHHH
T ss_pred HHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCc--HHHHHHHHhcCCHHHHHHHHcCCCHHHH
Confidence 8777642100000000 112223445678999999999999998774310 00000 114678888888888899999
Q ss_pred hhHHHHhhccchHhhhhhH-----HHHHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHh
Q 001381 777 RGSALALGVLPYELLANSW-----RDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCE 832 (1089)
Q Consensus 777 ~G~a~aLG~lp~~~~~~~~-----~~i~~~L~~~~~~~~~~~~~d~e~R~~al~sL~~i~~ 832 (1089)
+-++.||+.+...-...+. ..+++.|+..+ ...|.+.+..++.+|..++.
T Consensus 376 ~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL------~~~d~~i~~~~L~aL~nil~ 430 (510)
T 3ul1_B 376 KEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLL------SAKDTKIIQVILDAISNIFQ 430 (510)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGG------GCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHh------cCCCHHHHHHHHHHHHHHHH
Confidence 9999998877432111111 12345566654 34578999999999998875
No 30
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=98.35 E-value=0.00066 Score=85.05 Aligned_cols=393 Identities=11% Similarity=0.059 Sum_probs=225.3
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhC-----cch----hhhHHHHHHhhcCCCC-CCcchHHHHHHHHHHH
Q 001381 382 LEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLT-----SSL----SEEVFSSVLELFSPGE-GDGSWHGGCLALAELA 451 (1089)
Q Consensus 382 vE~iI~~ll~~L~d~dt~vR~saAK~l~rI~~~L~-----~~~----a~~vi~~il~~l~~~~-~~~~wHg~~LaLael~ 451 (1089)
++.-+++|..-+..++..+|.-|+=+|.|+...-. +.+ .+++++.+..+|.... ++...+-++=+|++|+
T Consensus 328 ~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS 407 (810)
T 3now_A 328 CEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLT 407 (810)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHT
T ss_pred HHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHh
Confidence 33345888888888889999999999999985321 122 2567888888876542 4445566788888876
Q ss_pred hcCCCCCCcc--cchHHHHHHhhhhhccccccCCChhhhhhhhHHHHHhhhccCccc-----------------------
Q 001381 452 RRGLLLPSSL--PKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTD----------------------- 506 (1089)
Q Consensus 452 ~~~ll~p~~l--~~il~~i~~~L~f~~r~~~~svG~~VRDAacfi~WslaR~~~~~~----------------------- 506 (1089)
...-.-.... ..++|.++.-|.-+ -..+.-.|..++-.+++.++...
T Consensus 408 ~~~~vk~~lv~d~g~Ip~LV~LL~s~--------d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld 479 (810)
T 3now_A 408 LDAECKEKLIEDKASIHALMDLARGG--------NQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELD 479 (810)
T ss_dssp TSHHHHHHHHHCHHHHHHHHHHHHTT--------CGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHH
T ss_pred CCcHHHHHHHHccchHHHHHHHhCCC--------ChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccc
Confidence 5321000001 23555555544311 13355555555566666553110
Q ss_pred ----h----hHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHhcccCCCCCCccceecccccchhhhHHHHHHHHHHHH
Q 001381 507 ----M----RNILEQIAPHLLTVACYDREVNCRRAAAAAFQENVGRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIA 578 (1089)
Q Consensus 507 ----l----~~~~~~l~~~Ll~~alfD~e~~iRRaAsAAlQE~vGR~g~~p~GI~il~~~d~~~v~~r~~a~~~va~~va 578 (1089)
. +..++.=+...++..+-.++..+|..|..|+..+.|-.. .-..+.
T Consensus 480 ~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~--------------------------~r~~Vv 533 (810)
T 3now_A 480 DVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKE--------------------------LRGKVV 533 (810)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHH--------------------------HHHHHH
T ss_pred cHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH--------------------------HHHHHH
Confidence 0 112222345556666677788888888888776643211 011122
Q ss_pred hhhcchHHHHHHHHhCccCCCCHHHHHHHHHHHHHHHcc-Cchhh-----HHHHHHHhccccCCC-ChhhHHHHHHHHHH
Q 001381 579 QYEGYLYPFVDELLYNKICHWDKVLRELAAEALSALVKY-DPEYF-----ANFILEKLTPFTLST-DLCTRHGATLAAGE 651 (1089)
Q Consensus 579 ~~~~Y~~~li~~Ll~~~l~h~D~~iR~laa~aL~~L~~~-~~~~~-----~~~vlp~Ll~~l~~~-d~~~RHG~lLalae 651 (1089)
+. ...++|++- +.+.+...|+.||.||++|+.. +|+.. ...++|.|++.+.++ +...+.-++.||+-
T Consensus 534 ~~-Gaip~Lv~L-----L~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~N 607 (810)
T 3now_A 534 QE-GGVKALLRM-----ALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTN 607 (810)
T ss_dssp HT-THHHHHHHH-----HHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHH
T ss_pred HC-CCHHHHHHH-----HccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHH
Confidence 11 123344433 3355788999999999999864 45432 234788888877654 32333335666665
Q ss_pred HHHHHhcccccCChhHHHHHH--hhhHHHHhhhhccCcchHHHHHHHHHHHHHhhhcCCCCchhhH--HHHHHHHHHhcC
Q 001381 652 VVLALCKYDYALPADKQKIVA--GIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLPEKTK--RSLLDTLNENLR 727 (1089)
Q Consensus 652 vl~~l~~~~~~~~~~~~~~i~--~i~~~~~~~~l~r~~~gelir~a~~~lI~~ls~~~lp~~~~~~--~~~~~~L~~~L~ 727 (1089)
+... +++....+. +.++.+..- ++ .+.+.++++++..|.+++... +....+. ...+..|-..+.
T Consensus 608 La~~--------~d~~~~~Ii~aG~l~~Lv~L-L~--s~~~~Vq~~A~~~L~NLa~~~-~~~~~~v~~~g~l~~Lv~LL~ 675 (810)
T 3now_A 608 LASM--------NESVRQRIIKEQGVSKIEYY-LM--EDHLYLTRAAAQCLCNLVMSE-DVIKMFEGNNDRVKFLALLCE 675 (810)
T ss_dssp HTTS--------CHHHHHHHHHTTHHHHHHHH-HH--SCCTTHHHHHHHHHHHHTTSH-HHHHHHHSSSSHHHHHHHGGG
T ss_pred HhcC--------CHHHHHHHHHcCCHHHHHHH-Hc--CCCHHHHHHHHHHHHHHhCCh-HHHHHHHhccCcHHHHHHHhc
Confidence 5421 122111111 112222210 11 124578999999999887521 1101111 123345556678
Q ss_pred CCcHHHHHHHHHHHHHHHHHhhhccCcchh--hhhHHHHHHHhCCCChhhhhhHHHHhhccchHhhhhhH-----HHHHH
Q 001381 728 HPNSQIQNAAVKALKPFVQTYMVAADSGVV--GGISLKYMEQLTDPNPAIRRGSALALGVLPYELLANSW-----RDVLL 800 (1089)
Q Consensus 728 ~~~~~V~~aAa~Al~~l~~~y~~~~~~~~~--~~~v~~~~~~L~s~~~~~r~G~a~aLG~lp~~~~~~~~-----~~i~~ 800 (1089)
+++..+|.+|+.|+..+....-.. ..... ...++.+++.|++.+...++-++.+++.+...- .... ..+++
T Consensus 676 s~d~~vq~~Aa~ALanLt~~s~~~-~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s-~e~~~~l~e~G~i~ 753 (810)
T 3now_A 676 DEDEETATACAGALAIITSVSVKC-CEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAG-EEIAKKLFETDIME 753 (810)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCHHH-HHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTC-HHHHHHHHTSTHHH
T ss_pred CCCHHHHHHHHHHHHHHhCCCHHH-HHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCC-HHHHHHHHHCCCHH
Confidence 899999999999999886521000 00111 357778888889999999999999988775421 1111 13445
Q ss_pred HHhhhccccCCCCCCCHHHHHHHHHHHHHHH
Q 001381 801 KLCSCCLIEENPEDRDTEARVNAVRGLVSVC 831 (1089)
Q Consensus 801 ~L~~~~~~~~~~~~~d~e~R~~al~sL~~i~ 831 (1089)
.|+.....+ +.++.+.+..|+++|..+.
T Consensus 754 ~L~~LL~~~---d~~~~~i~e~Al~aL~~ll 781 (810)
T 3now_A 754 LLSGLGQLP---DDTRAKAREVATQCLAAAE 781 (810)
T ss_dssp HHTTSCCCT---TSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCc---ccCcHHHHHHHHHHHHHHH
Confidence 565554311 2367899999999998875
No 31
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=98.35 E-value=2.9e-05 Score=92.94 Aligned_cols=364 Identities=14% Similarity=0.109 Sum_probs=210.6
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhCcchhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHHhcCCCCCCcc
Q 001381 382 LEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSLSEEVFSSVLELFSPGEGDGSWHGGCLALAELARRGLLLPSSL 461 (1089)
Q Consensus 382 vE~iI~~ll~~L~d~dt~vR~saAK~l~rI~~~L~~~~a~~vi~~il~~l~~~~~~~~wHg~~LaLael~~~~ll~p~~l 461 (1089)
+...|+.++..+...|..++..|.+.+-++..+=...-.++ +...|
T Consensus 74 ~~~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~---------------------------ii~~G------- 119 (529)
T 3tpo_A 74 VNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDN---------------------------IIRAG------- 119 (529)
T ss_dssp SSCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHH---------------------------HHHTT-------
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHH---------------------------HHHCC-------
Confidence 33345666778889999999999999988865422111111 12222
Q ss_pred cchHHHHHHhhhhhccccccCCChhhhhhhhHHHHHhhhccCccchhHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHH
Q 001381 462 PKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAAAAAFQEN 541 (1089)
Q Consensus 462 ~~il~~i~~~L~f~~r~~~~svG~~VRDAacfi~WslaR~~~~~~l~~~~~~l~~~Ll~~alfD~e~~iRRaAsAAlQE~ 541 (1089)
++|.+++.|.... -..++-.||+++|.++...+ +.-..+++.=+...++..+-+++..+|..|..||..+
T Consensus 120 --~ip~Lv~lL~~~~-------~~~~q~~Aa~aL~nia~~~~-~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nL 189 (529)
T 3tpo_A 120 --LIPKFVSFLGKTD-------CSPIQFESAWALTNIASGTS-EQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNI 189 (529)
T ss_dssp --HHHHHHHHHTCTT-------CHHHHHHHHHHHHHHHTSCH-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHcCCC-------CHHHHHHHHHHHHHHHcCCH-HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3555555552211 14577788888888886533 2223345555666777889999999999999998776
Q ss_pred hcccCCCCCCccceecccccchhhhHHHHHHHHHHHHhhhcchHHHHHHHHhCccCCCCHHHHHHHHHHHHHHHccCc--
Q 001381 542 VGRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNKICHWDKVLRELAAEALSALVKYDP-- 619 (1089)
Q Consensus 542 vGR~g~~p~GI~il~~~d~~~v~~r~~a~~~va~~va~~~~Y~~~li~~Ll~~~l~h~D~~iR~laa~aL~~L~~~~~-- 619 (1089)
.|-. | +....+.+. .-..+++..|-..........+.+.++.+|..++....
T Consensus 190 a~~~---~----------------------~~r~~i~~~-g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~ 243 (529)
T 3tpo_A 190 AGAG---S----------------------AFRDLVIKH-GAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPA 243 (529)
T ss_dssp HTTC---H----------------------HHHHHHHHT-TCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTC
T ss_pred hccC---H----------------------HHHHHHHHc-CCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccch
Confidence 4421 0 000111111 11223333222112223345667788888988886432
Q ss_pred --hhhHHHHHHHhccccCCCChhhHHHHHHHHHHHHHHHhcccccCChhHHHHH--HhhhHHHHhhhhccCcchHHHHHH
Q 001381 620 --EYFANFILEKLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPADKQKIV--AGIVPGIEKARLYRGKGGEIMRSA 695 (1089)
Q Consensus 620 --~~~~~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~l~~~~~~~~~~~~~~i--~~i~~~~~~~~l~r~~~gelir~a 695 (1089)
......++|.|...+.+.+..++.-++.+++.+...- ++....+ .++++.+.+ +.+. ...-++..
T Consensus 244 ~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~--------~~~~~~v~~~g~i~~Lv~--lL~~-~~~~v~~~ 312 (529)
T 3tpo_A 244 PPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGP--------NERIEMVVKKGVVPQLVK--LLGA-TELPIVTP 312 (529)
T ss_dssp CCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSC--------HHHHHHHHTTTCHHHHHH--HHTC-SCHHHHHH
T ss_pred hhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhh--------hhhHHHHHhccchHHHHH--HhcC-CChhHHHH
Confidence 1223567888888888888888888888888776421 1111111 112222221 1122 23346667
Q ss_pred HHHHHHHhhhcCCCCchhhH-HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCcchhhhhHHHHHHHhCCCChh
Q 001381 696 VSRFIECISLSFVSLPEKTK-RSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLTDPNPA 774 (1089)
Q Consensus 696 ~~~lI~~ls~~~lp~~~~~~-~~~~~~L~~~L~~~~~~V~~aAa~Al~~l~~~y~~~~~~~~~~~~v~~~~~~L~s~~~~ 774 (1089)
+++.+.+++...-.....+. ...+..|...|.++++.|+..|+.++..+...--..........+++.++..+++.+..
T Consensus 313 a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~ 392 (529)
T 3tpo_A 313 ALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFK 392 (529)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHH
T ss_pred HHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHH
Confidence 77777777632100000010 11233455667899999999999999877531000000001145788888888888888
Q ss_pred hhhhHHHHhhccchHhhhhhH-----HHHHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHh
Q 001381 775 IRRGSALALGVLPYELLANSW-----RDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCE 832 (1089)
Q Consensus 775 ~r~G~a~aLG~lp~~~~~~~~-----~~i~~~L~~~~~~~~~~~~~d~e~R~~al~sL~~i~~ 832 (1089)
.++.++.||+.+...-...+. ..++..|+..+ ...|.+.+..++.+|..++.
T Consensus 393 v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL------~~~d~~i~~~~L~aL~nil~ 449 (529)
T 3tpo_A 393 TQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLL------SAKDTKIIQVILDAISNIFQ 449 (529)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGG------GCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHh------cCCCHHHHHHHHHHHHHHHH
Confidence 999999998877432111111 12345566654 34578999999999988764
No 32
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.33 E-value=7.2e-06 Score=87.76 Aligned_cols=187 Identities=10% Similarity=0.136 Sum_probs=135.3
Q ss_pred HHHhccccCCCChhhHHHHHHHHHHHHHHHhcccccCChhHHHHHHhhhHHHH-hhhhccCcchHHHHHHHHHHHHHhhh
Q 001381 627 LEKLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPADKQKIVAGIVPGIE-KARLYRGKGGEIMRSAVSRFIECISL 705 (1089)
Q Consensus 627 lp~Ll~~l~~~d~~~RHG~lLalaevl~~l~~~~~~~~~~~~~~i~~i~~~~~-~~~l~r~~~gelir~a~~~lI~~ls~ 705 (1089)
-|.+.+.+.+.+|..|++++.++..++.+..+... .. ..++...+.... +. ...-++.++|..++.++.
T Consensus 17 ~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~---~~-~~~i~~~L~~~l~kd------~~~~V~~~a~~~l~~la~ 86 (242)
T 2qk2_A 17 PKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLEN---GE-YGALVSALKKVITKD------SNVVLVAMAGKCLALLAK 86 (242)
T ss_dssp CTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCC---CC-CHHHHHHHHHHHHHC------SCHHHHHHHHHHHHHHHH
T ss_pred CHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCC---CC-HHHHHHHHHHHhccC------CCHHHHHHHHHHHHHHHH
Confidence 34566677899999999999999999987433211 11 123333333322 11 233578899999988875
Q ss_pred cCCCCchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCcchhhhhHHHHHHHhCCCChhhhhhHHHHhhc
Q 001381 706 SFVSLPEKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLTDPNPAIRRGSALALGV 785 (1089)
Q Consensus 706 ~~lp~~~~~~~~~~~~L~~~L~~~~~~V~~aAa~Al~~l~~~y~~~~~~~~~~~~v~~~~~~L~s~~~~~r~G~a~aLG~ 785 (1089)
.--+.-......+...+.+.+.++...||.+|..|+..++... ..+.+++.+...+++.++..|.+.+..|+.
T Consensus 87 ~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~-------~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~ 159 (242)
T 2qk2_A 87 GLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYAST-------SLEAQQESIVESLSNKNPSVKSETALFIAR 159 (242)
T ss_dssp HHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTS-------CHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 2111112355667778888899999999999999999887632 236788899999988899999999999988
Q ss_pred c-----chHhhhhhHHHHHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHhhhcc
Q 001381 786 L-----PYELLANSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQ 836 (1089)
Q Consensus 786 l-----p~~~~~~~~~~i~~~L~~~~~~~~~~~~~d~e~R~~al~sL~~i~~~~g~ 836 (1089)
+ |.......+..++..|..++ .+.+.+.|..|..+++.++..+|.
T Consensus 160 ~l~~~~~~~~~~~~l~~l~p~l~~~l------~D~~~~VR~~A~~~l~~l~~~vg~ 209 (242)
T 2qk2_A 160 ALTRTQPTALNKKLLKLLTTSLVKTL------NEPDPTVRDSSAEALGTLIKLMGD 209 (242)
T ss_dssp HHTTCCGGGCCHHHHHHHHHHHHHHH------TSSCHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHcCCCCccHHHHHHHHHHHHHHh------cCCChHHHHHHHHHHHHHHHHcCH
Confidence 5 33334456778888888886 466889999999999999988774
No 33
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=98.31 E-value=0.00013 Score=91.61 Aligned_cols=380 Identities=10% Similarity=0.011 Sum_probs=210.7
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHHHhhhCcchhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHHhcCCCC--CCccc
Q 001381 385 IIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSLSEEVFSSVLELFSPGEGDGSWHGGCLALAELARRGLLL--PSSLP 462 (1089)
Q Consensus 385 iI~~ll~~L~d~dt~vR~saAK~l~rI~~~L~~~~a~~vi~~il~~l~~~~~~~~wHg~~LaLael~~~~ll~--p~~l~ 462 (1089)
-|..++..|.+++..+|-++++-+..+.. .+++...|+.++.++... +.....-++.+|+.++...-.. -...+
T Consensus 116 ~i~~lv~~L~~~~~~~r~~a~~~l~~~~~---~~i~~g~ip~Lv~lL~~~-d~~vr~~A~~~L~~L~~~~~~~~~i~~~~ 191 (780)
T 2z6g_A 116 AHPTNVQRLAEPSQMLKHAVVNLINYQDD---AELATRAIPELTKLLNDE-DQVVVNKAAVMVHQLSKKEASRHAIMRSP 191 (780)
T ss_dssp ----------CCSCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHTSHHHHHHHTTCH
T ss_pred cHHHHHHHhcCccHHHHHHHHHHHHhhhH---HHHHhCCHHHHHHHHCCC-CHHHHHHHHHHHHHHhCCChhHHHHHhcc
Confidence 36678888899999999999998876632 245677888888888643 3333455778888887642100 00124
Q ss_pred chHHHHHHhhhhhccccccCCChhhhhhhhHHHHHhhhccCccchhHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHh
Q 001381 463 KVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAAAAAFQENV 542 (1089)
Q Consensus 463 ~il~~i~~~L~f~~r~~~~svG~~VRDAacfi~WslaR~~~~~~l~~~~~~l~~~Ll~~alfD~e~~iRRaAsAAlQE~v 542 (1089)
.+++.+++.|.-+. -..+|-.|+..++.+++.... -..+...=+...|+..+-+++..+|+.|..+|..+.
T Consensus 192 ~~i~~Lv~~L~~~~-------d~~vr~~Aa~aL~~Ls~~~~~--~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa 262 (780)
T 2z6g_A 192 QMVSAIVRTMQNTN-------DVETARCTSGTLHNLSHHREG--LLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLL 262 (780)
T ss_dssp HHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHTSHHH--HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHcCCC-------CHHHHHHHHHHHHHHhCCchh--HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 57777777664221 246888999999988876332 222333334555667777888899999999987764
Q ss_pred cccCCCCCCccceecccccchhhhHHHHHHHHHHHHhhhcchHHHHHHHHhCccCCCCHHHHHHHHHHHHHHHccCchhh
Q 001381 543 GRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNKICHWDKVLRELAAEALSALVKYDPEYF 622 (1089)
Q Consensus 543 GR~g~~p~GI~il~~~d~~~v~~r~~a~~~va~~va~~~~Y~~~li~~Ll~~~l~h~D~~iR~laa~aL~~L~~~~~~~~ 622 (1089)
...... + ..+.+ ...++.|+. .+.+.+..+|+.++.+|..++..+++..
T Consensus 263 ~~~~~~------------------~-------~~v~~-----~g~v~~Lv~-lL~~~~~~v~~~a~~aL~~La~~~~e~~ 311 (780)
T 2z6g_A 263 LHQEGA------------------K-------MAVRL-----AGGLQKMVA-LLNKTNVKFLAITTDCLQILAYGNQESK 311 (780)
T ss_dssp HHSTTH------------------H-------HHHHH-----TTHHHHHHH-GGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCChhh------------------H-------HHHHH-----cCCHHHHHH-HHhcCCHHHHHHHHHHHHHHhcCChHHH
Confidence 332110 0 01111 124555554 5556788999999999999986544321
Q ss_pred ----HHHHHHHhccccCCCChhhHHHHHHHHHHHHHHHhcccccCChhHHHHHH--hhhHHHHhhhhccCcchHHHHHHH
Q 001381 623 ----ANFILEKLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPADKQKIVA--GIVPGIEKARLYRGKGGEIMRSAV 696 (1089)
Q Consensus 623 ----~~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~l~~~~~~~~~~~~~~i~--~i~~~~~~~~l~r~~~gelir~a~ 696 (1089)
....++.|+..+.+.+...+.... +.++..+... +.....+. +.++.+.+ +.+....++. ..+
T Consensus 312 ~~i~~~~~i~~Lv~lL~~~~~~~~~~~a---~~aL~~Ls~~-----~~~~~~i~~~g~l~~Ll~--lL~~~~~~~~-~~a 380 (780)
T 2z6g_A 312 LIILASGGPQALVNIMRTYTYEKLLWTT---SRVLKVLSVC-----SSNKPAIVEAGGMQALGL--HLTDPSQRLV-QNC 380 (780)
T ss_dssp HHHHTTTHHHHHHHHHTTCCCHHHHHHH---HHHHHHHHTS-----TTHHHHHHHTTHHHHHGG--GTTCSCHHHH-HHH
T ss_pred HHHHHcCCHHHHHHHHhcCCHHHHHHHH---HHHHHHhhcC-----hHHHHHHHHhchHHHHHH--HHcCCchHHH-HHH
Confidence 123456666655555444443221 2222222211 11111111 22233321 1222233344 444
Q ss_pred HHHHHHhhhcCCCCchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCcch-----hhhhHHHHHHHhCC-
Q 001381 697 SRFIECISLSFVSLPEKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGV-----VGGISLKYMEQLTD- 770 (1089)
Q Consensus 697 ~~lI~~ls~~~lp~~~~~~~~~~~~L~~~L~~~~~~V~~aAa~Al~~l~~~y~~~~~~~~-----~~~~v~~~~~~L~s- 770 (1089)
+..+..++....+. ......+..|...|.+.+..++..|+.++..+... +.+. ....++.+++.|.+
T Consensus 381 ~~~L~~L~~~~~~~--~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~-----~~~~~~~i~~~g~i~~Lv~lL~~~ 453 (780)
T 2z6g_A 381 LWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN-----NYKNKMMVCQVGGIEALVRTVLRA 453 (780)
T ss_dssp HHHHHHHHTTCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS-----CHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHhccchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-----CHHHHHHHHHCCCHHHHHHHHHcc
Confidence 66666666433211 11234555566677899999999999999876431 1110 13567778877753
Q ss_pred -CChhhhhhHHHHhhccchHhhhh-----hH--HHHHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHH
Q 001381 771 -PNPAIRRGSALALGVLPYELLAN-----SW--RDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVC 831 (1089)
Q Consensus 771 -~~~~~r~G~a~aLG~lp~~~~~~-----~~--~~i~~~L~~~~~~~~~~~~~d~e~R~~al~sL~~i~ 831 (1089)
.....+..++.+||.+....... .+ ...+..|+..+. .....+.|..|+.+|..+.
T Consensus 454 ~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~-----~~~~~~v~~~A~~aL~nLa 517 (780)
T 2z6g_A 454 GDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLH-----PPSHWPLIKATVGLIRNLA 517 (780)
T ss_dssp TTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTS-----TTCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhc-----CCChHHHHHHHHHHHHHHh
Confidence 23478888899999885321110 00 123445555543 2234589999999999876
No 34
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.28 E-value=0.0085 Score=76.65 Aligned_cols=198 Identities=10% Similarity=0.032 Sum_probs=118.7
Q ss_pred cchHHHHHHHHhCc-------cCCCCH-------HHHHHHHHHHHHHHccCchhhHHHHHHHhccccCC-----CChhhH
Q 001381 582 GYLYPFVDELLYNK-------ICHWDK-------VLRELAAEALSALVKYDPEYFANFILEKLTPFTLS-----TDLCTR 642 (1089)
Q Consensus 582 ~Y~~~li~~Ll~~~-------l~h~D~-------~iR~laa~aL~~L~~~~~~~~~~~vlp~Ll~~l~~-----~d~~~R 642 (1089)
.+...+++.++... +..||. ..|+.++.+|..++...++.+...+++.+.+.+.. .+|..|
T Consensus 402 ~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~w~~~ 481 (971)
T 2x1g_F 402 PLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLNDYILEILAAMLDEAIADLQRHPTHWTKL 481 (971)
T ss_dssp HHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHCTTCCHHH
T ss_pred HHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcHHHH
Confidence 45556667666521 123443 47888999999999888877777777776655543 789999
Q ss_pred HHHHHHHHHHHHHHhcccccCChhHHHHHHhhhHHHHhhhhccCcchHHHHHHHHHHHHHhhhcCCCCchhhHHHHHHHH
Q 001381 643 HGATLAAGEVVLALCKYDYALPADKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLPEKTKRSLLDTL 722 (1089)
Q Consensus 643 HG~lLalaevl~~l~~~~~~~~~~~~~~i~~i~~~~~~~~l~r~~~gelir~a~~~lI~~ls~~~lp~~~~~~~~~~~~L 722 (1089)
++++.+++.+..++.... ......+..++..+.. . .....+|.++|..++.++.- +.-+.+.+...+..+
T Consensus 482 eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~----~-d~~~~vr~~a~~~l~~~~~~-l~~~~~~l~~vl~~l 551 (971)
T 2x1g_F 482 EACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPY----E-KLNVKLLGTALETMGSYCNW-LMENPAYIPPAINLL 551 (971)
T ss_dssp HHHHHHHHHTTTC----------CHHHHHHHHHHHSCT----T-TSCHHHHHHHHHHHHHTHHH-HC----CHHHHHHHH
T ss_pred HHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCc----c-ccCHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHH
Confidence 999999999876554211 1222333333333221 0 12357899999999987741 111223444555555
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHHHhhhccCcchhhhhHHHHHHHhCCCChhhhhhHHHHhhccchHhhhhhHHHHHHHH
Q 001381 723 NENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLTDPNPAIRRGSALALGVLPYELLANSWRDVLLKL 802 (1089)
Q Consensus 723 ~~~L~~~~~~V~~aAa~Al~~l~~~y~~~~~~~~~~~~v~~~~~~L~s~~~~~r~G~a~aLG~lp~~~~~~~~~~i~~~L 802 (1089)
..+| + ..|+.+|+.|+..+++.. ... +.+....++..|
T Consensus 552 ~~~l-~--~~v~~~A~~al~~l~~~~---------~~~------------------------------l~p~~~~ll~~l 589 (971)
T 2x1g_F 552 VRGL-N--SSMSAQATLGLKELCRDC---------QLQ------------------------------LKPYADPLLNAC 589 (971)
T ss_dssp HHHH-H--SSCHHHHHHHHHHHHHHC---------HHH------------------------------HHHHHHHHHHHH
T ss_pred HHHh-C--hHHHHHHHHHHHHHHHHH---------HHh------------------------------ccccHHHHHHHH
Confidence 5555 2 678888998888776531 000 123334455555
Q ss_pred hhhccccCCCCCCCHHHHHHHHHHHHHHHhhhc
Q 001381 803 CSCCLIEENPEDRDTEARVNAVRGLVSVCETLT 835 (1089)
Q Consensus 803 ~~~~~~~~~~~~~d~e~R~~al~sL~~i~~~~g 835 (1089)
...+.. ...+.+.|..++++++.++..++
T Consensus 590 ~~~l~~----~~~~~~~~~~~~~ai~~i~~~~~ 618 (971)
T 2x1g_F 590 HASLNT----GRMKNSDSVRLMFSIGKLMSLLR 618 (971)
T ss_dssp HHHHHS----TTSCHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHcC----CCCChHHHHHHHHHHHHHHHhCC
Confidence 444321 22467889999999999887553
No 35
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=98.27 E-value=0.00013 Score=89.35 Aligned_cols=386 Identities=14% Similarity=0.009 Sum_probs=226.7
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhCcc---h-hhhHHHHHHhhcCCCCCCcchHH-HHHHHHHHHhcCCCCC
Q 001381 384 EIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSS---L-SEEVFSSVLELFSPGEGDGSWHG-GCLALAELARRGLLLP 458 (1089)
Q Consensus 384 ~iI~~ll~~L~d~dt~vR~saAK~l~rI~~~L~~~---~-a~~vi~~il~~l~~~~~~~~wHg-~~LaLael~~~~ll~p 458 (1089)
.+|+.|+..|.+.+..+|..|+.+|..|+..-+.. + ...+++.+++.+.... ..... .+-+|..++... +
T Consensus 98 g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~--~~~~~~a~~~L~~La~~~---~ 172 (644)
T 2z6h_A 98 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN--VKFLAITTDCLQILAYGN---Q 172 (644)
T ss_dssp THHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCC--HHHHHHHHHHHHHHHTTC---H
T ss_pred CCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCC--HHHHHHHHHHHHHHHhcC---c
Confidence 36777888889999999999999999999764321 2 2468889999886542 22333 344666666421 1
Q ss_pred Cc---c--cchHHHHHHhhhhhccccccCCChhhhhhhhHHHHHhhhccCccchhHHHHHHHHHHHHHHhcCCCchhhHH
Q 001381 459 SS---L--PKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRA 533 (1089)
Q Consensus 459 ~~---l--~~il~~i~~~L~f~~r~~~~svG~~VRDAacfi~WslaR~~~~~~l~~~~~~l~~~Ll~~alfD~e~~iRRa 533 (1089)
+. + ...+|.+++.|.-. ....++-+++.++|.++.. ++.-..+++.-+...++..+-+.+..+|+.
T Consensus 173 ~~~~~i~~~g~v~~Lv~lL~~~-------~~~~~~~~a~~~L~nLs~~--~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~ 243 (644)
T 2z6h_A 173 ESKLIILASGGPQALVNIMRTY-------TYEKLLWTTSRVLKVLSVC--SSNKPAIVEAGGMQALGLHLTDPSQRLVQN 243 (644)
T ss_dssp HHHHHHHHTTHHHHHHHHHTTC-------CCHHHHHHHHHHHHHHTTC--TTHHHHHHHTTHHHHHHTTTTCSCHHHHHH
T ss_pred HHHHHHHHcCChHHHHHHHHcC-------ChHHHHHHHHHHHHHHhcC--cccHHHHHHCCCHHHHHHHHhcCCHHHHHH
Confidence 10 0 23466666555211 1356788899999999853 322223333334555667777888999999
Q ss_pred HHHHHHHHhcccCCCCCCccceecccccchhhhHHHHHHHHHHHHhhhcchHHHHHHHHhCccCCCCHHHHHHHHHHHHH
Q 001381 534 AAAAFQENVGRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNKICHWDKVLRELAAEALSA 613 (1089)
Q Consensus 534 AsAAlQE~vGR~g~~p~GI~il~~~d~~~v~~r~~a~~~va~~va~~~~Y~~~li~~Ll~~~l~h~D~~iR~laa~aL~~ 613 (1089)
+..+|..+. +.+.-. +....+++.|+. .+.+.|.++|+.|+.+|+.
T Consensus 244 a~~~L~nL~-~~~~~~--------------------------------~~~~~~i~~Lv~-lL~~~d~~v~~~a~~aL~~ 289 (644)
T 2z6h_A 244 CLWTLRNLS-DAATKQ--------------------------------EGMEGLLGTLVQ-LLGSDDINVVTCAAGILSN 289 (644)
T ss_dssp HHHHHHHHG-GGCTTC--------------------------------CSCHHHHHHHHH-HTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-hcchhh--------------------------------hhhhhHHHHHHH-HHcCCCHHHHHHHHHHHHH
Confidence 999998874 322100 011245666665 5668899999999999999
Q ss_pred HHccCchhhH----HHHHHHhccccCC-CC-hhhHHHHHHHHHHHHHHHhcccccCChhHHHHHH--hhhHHHHhhhhcc
Q 001381 614 LVKYDPEYFA----NFILEKLTPFTLS-TD-LCTRHGATLAAGEVVLALCKYDYALPADKQKIVA--GIVPGIEKARLYR 685 (1089)
Q Consensus 614 L~~~~~~~~~----~~vlp~Ll~~l~~-~d-~~~RHG~lLalaevl~~l~~~~~~~~~~~~~~i~--~i~~~~~~~~l~r 685 (1089)
|+...++... ...+|.|++.+.. .+ ..++..++.+++.+...- +.++.....+. ..++.+. ++.+
T Consensus 290 L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~-----~~~~~~q~~v~~~~~l~~L~--~lL~ 362 (644)
T 2z6h_A 290 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRH-----QEAEMAQNAVRLHYGLPVVV--KLLH 362 (644)
T ss_dssp HHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSS-----TTHHHHHHHHHHTTHHHHHH--HTTS
T ss_pred HHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCC-----chHHHHHHHHHHccChHHHH--HHhC
Confidence 9986654221 2356777766654 22 577888888887774210 00011111111 2233332 1223
Q ss_pred CcchHHHHHHHHHHHHHhhhcCCCCch-----hhHHHHHHHHHHh-----------cC-------CCcHHHHHHHHHHHH
Q 001381 686 GKGGEIMRSAVSRFIECISLSFVSLPE-----KTKRSLLDTLNEN-----------LR-------HPNSQIQNAAVKALK 742 (1089)
Q Consensus 686 ~~~gelir~a~~~lI~~ls~~~lp~~~-----~~~~~~~~~L~~~-----------L~-------~~~~~V~~aAa~Al~ 742 (1089)
....+-++.++|..+.+++... +... ..++.+...+... +. ...++|+.+|+.|+.
T Consensus 363 ~~~~~~v~~~a~~~L~nLa~~~-~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~ 441 (644)
T 2z6h_A 363 PPSHWPLIKATVGLIRNLALCP-ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALH 441 (644)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSG-GGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHH
T ss_pred ccCchHHHHHHHHHHHHHccCH-HHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHH
Confidence 2223467788899998887521 1111 1233444444331 11 135778888888887
Q ss_pred HHHHHhhhccCcchhhhhHHHHHHHhCCCChhhhhhHHHHhhccchHh-hhhhH--HHHHHHHhhhccccCCCCCCCHHH
Q 001381 743 PFVQTYMVAADSGVVGGISLKYMEQLTDPNPAIRRGSALALGVLPYEL-LANSW--RDVLLKLCSCCLIEENPEDRDTEA 819 (1089)
Q Consensus 743 ~l~~~y~~~~~~~~~~~~v~~~~~~L~s~~~~~r~G~a~aLG~lp~~~-~~~~~--~~i~~~L~~~~~~~~~~~~~d~e~ 819 (1089)
.++..-... ..-.....++.+++.+++.++..++..+.+|+.+...- ....+ ...++.|+... ...+.+.
T Consensus 442 ~La~~~~~~-~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~i~~~g~l~~L~~ll------~~~~~~v 514 (644)
T 2z6h_A 442 ILARDVHNR-IVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELL------HSRNEGV 514 (644)
T ss_dssp HHTTSHHHH-HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHHT------TCSCHHH
T ss_pred HHhcCHHHH-HHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCChhHHHHHH------cCCCHHH
Confidence 664311000 00011467888999998888888888888877664210 00001 11233444443 3558899
Q ss_pred HHHHHHHHHHHHh
Q 001381 820 RVNAVRGLVSVCE 832 (1089)
Q Consensus 820 R~~al~sL~~i~~ 832 (1089)
|.+|..+|..+..
T Consensus 515 r~~A~~aL~~l~~ 527 (644)
T 2z6h_A 515 ATYAAAVLFRMSE 527 (644)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988643
No 36
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=98.26 E-value=7e-05 Score=88.28 Aligned_cols=383 Identities=14% Similarity=0.013 Sum_probs=216.6
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhCc---ch-hhhHHHHHHhhcCCCCCCcchHHHHHHHHHHHhcCCCCCC
Q 001381 384 EIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTS---SL-SEEVFSSVLELFSPGEGDGSWHGGCLALAELARRGLLLPS 459 (1089)
Q Consensus 384 ~iI~~ll~~L~d~dt~vR~saAK~l~rI~~~L~~---~~-a~~vi~~il~~l~~~~~~~~wHg~~LaLael~~~~ll~p~ 459 (1089)
..|+.|+..|.+.+..+|..++.+|+.++..-+. .+ ...+++.+++.+.... .....-.+-+|+.++... ++
T Consensus 101 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~-~~~~~~~~~~L~~la~~~---~~ 176 (529)
T 1jdh_A 101 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGN---QE 176 (529)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTC---HH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHhCC---HH
Confidence 4677888889999999999999999999876432 12 2468888999886532 111122344555555421 11
Q ss_pred c----c-cchHHHHHHhhhhhccccccCCChhhhhhhhHHHHHhhhccCccchhHHHHHHHHHHHHHHhcCCCchhhHHH
Q 001381 460 S----L-PKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAA 534 (1089)
Q Consensus 460 ~----l-~~il~~i~~~L~f~~r~~~~svG~~VRDAacfi~WslaR~~~~~~l~~~~~~l~~~Ll~~alfD~e~~iRRaA 534 (1089)
. . ...+|.+.+.|.-. ....++-+++.++|.++.. ++.-..+++.=+...++..+-+.+..+|+.+
T Consensus 177 ~~~~i~~~~~i~~L~~ll~~~-------~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a 247 (529)
T 1jdh_A 177 SKLIILASGGPQALVNIMRTY-------TYEKLLWTTSRVLKVLSVC--SSNKPAIVEAGGMQALGLHLTDPSQRLVQNC 247 (529)
T ss_dssp HHHHHHHTTHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHTTS--TTHHHHHHHTTHHHHHHTTTTSSCHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHhC-------ChHHHHHHHHHHHHHHhcC--cccHHHHHHCCCHHHHHHHHhCCChHHHHHH
Confidence 0 0 23456665555322 1256788899999999863 3222233333345556677788888999999
Q ss_pred HHHHHHHhcccCCCCCCccceecccccchhhhHHHHHHHHHHHHhhhcchHHHHHHHHhCccCCCCHHHHHHHHHHHHHH
Q 001381 535 AAAFQENVGRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNKICHWDKVLRELAAEALSAL 614 (1089)
Q Consensus 535 sAAlQE~vGR~g~~p~GI~il~~~d~~~v~~r~~a~~~va~~va~~~~Y~~~li~~Ll~~~l~h~D~~iR~laa~aL~~L 614 (1089)
..+|..+....... .....+++.|+. .+.+.|.++|+.|+.+|++|
T Consensus 248 ~~~L~~l~~~~~~~---------------------------------~~~~~~i~~L~~-ll~~~~~~v~~~a~~~L~~L 293 (529)
T 1jdh_A 248 LWTLRNLSDAATKQ---------------------------------EGMEGLLGTLVQ-LLGSDDINVVTCAAGILSNL 293 (529)
T ss_dssp HHHHHHHHTTCTTC---------------------------------SCCHHHHHHHHH-HTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCChhh---------------------------------HHHHhHHHHHHH-HHcCCCHHHHHHHHHHHHHH
Confidence 88887664321110 011245666665 56789999999999999999
Q ss_pred HccCchhhH----HHHHHHhccccCC--CChhhHHHHHHHHHHHHHHHhcccccCChhHHHHHH--hhhHHHHhhhhccC
Q 001381 615 VKYDPEYFA----NFILEKLTPFTLS--TDLCTRHGATLAAGEVVLALCKYDYALPADKQKIVA--GIVPGIEKARLYRG 686 (1089)
Q Consensus 615 ~~~~~~~~~----~~vlp~Ll~~l~~--~d~~~RHG~lLalaevl~~l~~~~~~~~~~~~~~i~--~i~~~~~~~~l~r~ 686 (1089)
+...++... ...+|.+++.+.. .+..++..++.+++.+...- +..+.....+. +.++.+.+ +.+.
T Consensus 294 ~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~-----~~~~~~~~~i~~~~~i~~L~~--lL~~ 366 (529)
T 1jdh_A 294 TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRH-----QEAEMAQNAVRLHYGLPVVVK--LLHP 366 (529)
T ss_dssp TTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSS-----TTHHHHHHHHHHTTCHHHHHH--TTST
T ss_pred hcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCC-----chHHHHHHHHHHcCChhHHHH--Hhcc
Confidence 886653221 2356777766643 33678888888888764210 00011111111 22333321 2222
Q ss_pred cchHHHHHHHHHHHHHhhhcCCCCchhhH-HHHHHHHHHhcCCCcHHHHH----------------------HHHHHHHH
Q 001381 687 KGGEIMRSAVSRFIECISLSFVSLPEKTK-RSLLDTLNENLRHPNSQIQN----------------------AAVKALKP 743 (1089)
Q Consensus 687 ~~gelir~a~~~lI~~ls~~~lp~~~~~~-~~~~~~L~~~L~~~~~~V~~----------------------aAa~Al~~ 743 (1089)
....-++.++|..+.+++... +....+. ......|...|.+.+.++|. .+..++..
T Consensus 367 ~~~~~v~~~a~~~l~nl~~~~-~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~ 445 (529)
T 1jdh_A 367 PSHWPLIKATVGLIRNLALCP-ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHI 445 (529)
T ss_dssp TCCHHHHHHHHHHHHHHTTSG-GGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhcCh-hhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHH
Confidence 223467778888888887521 1111111 11222233333344444444 44444443
Q ss_pred HHHHhhhccCc--chhhhhHHHHHHHhCCCChhhhhhHHHHhhccchHh-hhhhH--HHHHHHHhhhccccCCCCCCCHH
Q 001381 744 FVQTYMVAADS--GVVGGISLKYMEQLTDPNPAIRRGSALALGVLPYEL-LANSW--RDVLLKLCSCCLIEENPEDRDTE 818 (1089)
Q Consensus 744 l~~~y~~~~~~--~~~~~~v~~~~~~L~s~~~~~r~G~a~aLG~lp~~~-~~~~~--~~i~~~L~~~~~~~~~~~~~d~e 818 (1089)
+... .... -.....++.+++.+.+.++..++..+.+|+.+...- ....+ ...++.|.... .+.+.+
T Consensus 446 L~~~---~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~i~~~~~~~~L~~l~------~~~~~~ 516 (529)
T 1jdh_A 446 LARD---VHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELL------HSRNEG 516 (529)
T ss_dssp HTTS---HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGG------GCSSHH
T ss_pred HhcC---chHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHHh------cCCCHH
Confidence 3210 0000 011456788888888888889998888888764210 00000 11233444443 345789
Q ss_pred HHHHHHHHHHHH
Q 001381 819 ARVNAVRGLVSV 830 (1089)
Q Consensus 819 ~R~~al~sL~~i 830 (1089)
.|..|..+|..+
T Consensus 517 v~~~a~~aL~~l 528 (529)
T 1jdh_A 517 VATYAAAVLFRM 528 (529)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 999999988764
No 37
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.19 E-value=0.00037 Score=85.37 Aligned_cols=408 Identities=12% Similarity=0.077 Sum_probs=227.0
Q ss_pred hHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhCcchhhhHHHHHHhhcCC-CCCCcchHHHHHHHHHHHhcCCCC
Q 001381 379 PDILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSLSEEVFSSVLELFSP-GEGDGSWHGGCLALAELARRGLLL 457 (1089)
Q Consensus 379 ~e~vE~iI~~ll~~L~d~dt~vR~saAK~l~rI~~~L~~~~a~~vi~~il~~l~~-~~~~~~wHg~~LaLael~~~~ll~ 457 (1089)
||.+.-+++.+...|.|++..+|..|-+++|.|.. +++++.+++.|...+.. +.++...-.+++++..+.+..
T Consensus 106 ~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~---~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~--- 179 (621)
T 2vgl_A 106 SELIRLINNAIKNDLASRNPTFMGLALHCIANVGS---REMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTS--- 179 (621)
T ss_dssp HHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCC---HHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHC---
T ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccCC---HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhC---
Confidence 57788899999999999999999999999999954 68999999999999832 223333456999999998853
Q ss_pred CCccc--chHHHHHHhhhhhccccccCCChhhhhhhhHHHHHhhhccCccchhHHHHHH---HHHHHHHHhcC-CCchhh
Q 001381 458 PSSLP--KVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQI---APHLLTVACYD-REVNCR 531 (1089)
Q Consensus 458 p~~l~--~il~~i~~~L~f~~r~~~~svG~~VRDAacfi~WslaR~~~~~~l~~~~~~l---~~~Ll~~alfD-~e~~iR 531 (1089)
|+.++ ..++.+.+.|.... ..|.=+|..++-.+++.. ++.+.+++..+ ...++...-+. +|....
T Consensus 180 p~~~~~~~~~~~l~~lL~d~d--------~~V~~~a~~~l~~i~~~~-~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~ 250 (621)
T 2vgl_A 180 PDLVPMGDWTSRVVHLLNDQH--------LGVVTAATSLITTLAQKN-PEEFKTSVSLAVSRLSRIVTSASTDLQDYTYY 250 (621)
T ss_dssp GGGCCCCSCHHHHHHHTTCSC--------HHHHHHHHHHHHHHHHHC-HHHHTTHHHHHHHHHHHHHHCCSSSCSTTEET
T ss_pred hhhcCchhHHHHHHHHhCCCC--------ccHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHhCCCCCccchhhc
Confidence 56666 78888877774222 346667776666666542 22222333322 22222211111 110000
Q ss_pred HH----HHHHHHHHhcccCCCCC------Ccccee----ccc-cc---chhhhH--HHH-HHHHHHHH---hhhcchHHH
Q 001381 532 RA----AAAAFQENVGRQGNYPH------GIDIVN----TAD-YF---SLSSRV--YSY-LHVAVFIA---QYEGYLYPF 587 (1089)
Q Consensus 532 Ra----AsAAlQE~vGR~g~~p~------GI~il~----~~d-~~---~v~~r~--~a~-~~va~~va---~~~~Y~~~l 587 (1089)
.. +...+=+++++++...+ -++++. .++ -- .+..++ ++. .+....+- ..+++....
T Consensus 251 ~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~~~ 330 (621)
T 2vgl_A 251 FVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVRA 330 (621)
T ss_dssp TEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 00 11112234455442110 000000 000 00 000111 111 11122221 234566777
Q ss_pred HHHHHhCccCCCCHHHHHHHHHHHHHHHccCch-hhHHHHHHHhccccC-CCChhhHHHHHHHHHHHHHHHhcccccCCh
Q 001381 588 VDELLYNKICHWDKVLRELAAEALSALVKYDPE-YFANFILEKLTPFTL-STDLCTRHGATLAAGEVVLALCKYDYALPA 665 (1089)
Q Consensus 588 i~~Ll~~~l~h~D~~iR~laa~aL~~L~~~~~~-~~~~~vlp~Ll~~l~-~~d~~~RHG~lLalaevl~~l~~~~~~~~~ 665 (1089)
++.|.. .+.+.|.++|..|-.+|..++...|. .+.....+.++.++. +.|..+|--++-.+..+.. +
T Consensus 331 ~~~L~~-~L~~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~----------~ 399 (621)
T 2vgl_A 331 CNQLGQ-FLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCD----------R 399 (621)
T ss_dssp HHHHHH-HSSCSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC----------H
T ss_pred HHHHHH-HhcCCCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcC----------h
Confidence 777765 56789999999999999999988762 334455677777787 8888888866655555432 2
Q ss_pred hHHHHHHhhhHHHHhhhhccCcchHHHHHHHHHHHHHhhhcCCCCchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 001381 666 DKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLPEKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFV 745 (1089)
Q Consensus 666 ~~~~~i~~i~~~~~~~~l~r~~~gelir~a~~~lI~~ls~~~lp~~~~~~~~~~~~L~~~L~~~~~~V~~aAa~Al~~l~ 745 (1089)
..++.|..-+...... -..+ ++..+..-|..|+....|.....++...+++... .+.+...+...+..+.
T Consensus 400 ~Nv~~Iv~eL~~yl~~-----~d~~-~~~~~v~~I~~la~k~~~~~~~~v~~Ll~ll~~~----~~~v~~ev~~~l~~ii 469 (621)
T 2vgl_A 400 SNAQQIVAEMLSYLET-----ADYS-IREEIVLKVAILAEKYAVDYTWYVDTILNLIRIA----GDYVSEEVWYRVIQIV 469 (621)
T ss_dssp HHHHHHHHHHHHHHHH-----CCHH-HHHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHH----GGGSCSHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHh-----cCHH-HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhh----cccchHHHHHHHHHHH
Confidence 2223322222222111 1233 4444455566666432233344556666666543 2223333444444444
Q ss_pred HHhhhccCcchhhhhHHHHHHHhCCCC--hhhhhhHHHHhhccchHhhhhh---HHHHHHHHhhhccccCCCCCCCHHHH
Q 001381 746 QTYMVAADSGVVGGISLKYMEQLTDPN--PAIRRGSALALGVLPYELLANS---WRDVLLKLCSCCLIEENPEDRDTEAR 820 (1089)
Q Consensus 746 ~~y~~~~~~~~~~~~v~~~~~~L~s~~--~~~r~G~a~aLG~lp~~~~~~~---~~~i~~~L~~~~~~~~~~~~~d~e~R 820 (1089)
... .+.....+.++++.+++.. ...-+..+..+|-......... -.+++..+.... .....++|
T Consensus 470 ~~~-----~~~~~~~~~~l~~~l~~~~~~~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~------~~~~~~v~ 538 (621)
T 2vgl_A 470 INR-----DDVQGYAAKTVFEALQAPACHENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKF------HLCSVPTR 538 (621)
T ss_dssp GGG-----CSCHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHH------TTSCHHHH
T ss_pred hCC-----hhHHHHHHHHHHHHHcCccchHHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHh------ccCCHHHH
Confidence 321 2333556777787776432 3344566688888866554311 123444454433 23468999
Q ss_pred HHHHHHHHHHHhh
Q 001381 821 VNAVRGLVSVCET 833 (1089)
Q Consensus 821 ~~al~sL~~i~~~ 833 (1089)
..++.++.+++.+
T Consensus 539 ~~~Lta~~Kl~~~ 551 (621)
T 2vgl_A 539 ALLLSTYIKFVNL 551 (621)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998754
No 38
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=98.19 E-value=0.00046 Score=82.21 Aligned_cols=344 Identities=12% Similarity=0.090 Sum_probs=206.2
Q ss_pred HHHHhcCCCchhhHHHHHHHHHHhcccCCCCCCccceecccccchhhhHHHHHHHHHHHHhhhcchHHHHHHHHhCccC-
Q 001381 519 LTVACYDREVNCRRAAAAAFQENVGRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNKIC- 597 (1089)
Q Consensus 519 l~~alfD~e~~iRRaAsAAlQE~vGR~g~~p~GI~il~~~d~~~v~~r~~a~~~va~~va~~~~Y~~~li~~Ll~~~l~- 597 (1089)
++..+...+...+..|..++..++-+-.+-| |+- |-+ ..+|+.|+. .|.
T Consensus 62 ~v~~l~s~d~~~q~~a~~~~rklls~e~~pp--i~~----------------------ii~-----~G~ip~LV~-lL~~ 111 (510)
T 3ul1_B 62 IVKGINSNNLESQLQATQAARKLLSREKQPP--IDN----------------------IIR-----AGLIPKFVS-FLGK 111 (510)
T ss_dssp HHHHHTSSCHHHHHHHHHHHHHHHTCSSCCC--HHH----------------------HHH-----TTHHHHHHH-HTTC
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHhcCCCCch--HHH----------------------HHH-----CCCHHHHHH-HHCC
Confidence 4578888999999999999888876665544 100 001 124555554 444
Q ss_pred CCCHHHHHHHHHHHHHHHccCchhhH----HHHHHHhccccCCCChhhHHHHHHHHHHHHHHHhcccccCChhHHHHHH-
Q 001381 598 HWDKVLRELAAEALSALVKYDPEYFA----NFILEKLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPADKQKIVA- 672 (1089)
Q Consensus 598 h~D~~iR~laa~aL~~L~~~~~~~~~----~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~l~~~~~~~~~~~~~~i~- 672 (1089)
+-++.++.-||.||++|+...++... .-.+|.|+..+.+.+..+|.-++.+|+.+... +++....+.
T Consensus 112 ~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d--------~~~~r~~v~~ 183 (510)
T 3ul1_B 112 TDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGD--------GSAFRDLVIK 183 (510)
T ss_dssp TTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT--------CHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC--------CHHHHHHHHH
Confidence 44589999999999999987776432 13689999999999999999999999988631 111111111
Q ss_pred -hhhHHHH---hhhhccCcchHHHHHHHHHHHHHhhhcCCCCc-hhhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Q 001381 673 -GIVPGIE---KARLYRGKGGEIMRSAVSRFIECISLSFVSLP-EKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQT 747 (1089)
Q Consensus 673 -~i~~~~~---~~~l~r~~~gelir~a~~~lI~~ls~~~lp~~-~~~~~~~~~~L~~~L~~~~~~V~~aAa~Al~~l~~~ 747 (1089)
+.++.+. +...........++.++.. +..++...-|.. .......+..|...|.+.+++++..|+.|+..+...
T Consensus 184 ~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~-L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~ 262 (510)
T 3ul1_B 184 HGAIDPLLALLAVPDLSTLACGYLRNLTWT-LSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDG 262 (510)
T ss_dssp TTCHHHHHHHTCSSCGGGSCHHHHHHHHHH-HHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS
T ss_pred cCChHHHHHHHHhccchhhhHHHHHHHHHH-HHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Confidence 1111111 1110111122345554444 344443332322 233456677777888999999999999998766431
Q ss_pred hhhccCcch-----hhhhHHHHHHHhCCCChhhhhhHHHHhhccchHhhhhhHHHHH-----HHHhhhccccCCCCCCCH
Q 001381 748 YMVAADSGV-----VGGISLKYMEQLTDPNPAIRRGSALALGVLPYELLANSWRDVL-----LKLCSCCLIEENPEDRDT 817 (1089)
Q Consensus 748 y~~~~~~~~-----~~~~v~~~~~~L~s~~~~~r~G~a~aLG~lp~~~~~~~~~~i~-----~~L~~~~~~~~~~~~~d~ 817 (1089)
+.+. ...+++.+++.+++.+...+...+.+||.+....- .....++ ..|+..+ ...+.
T Consensus 263 -----~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~-~~~~~i~~~g~l~~L~~LL------~~~~~ 330 (510)
T 3ul1_B 263 -----PNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTD-EQTQKVIDAGALAVFPSLL------TNPKT 330 (510)
T ss_dssp -----CHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCH-HHHHHHHHTTGGGGCC-CT------TCSSH
T ss_pred -----hhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCH-HHHHHHhhccchHHHHHHh------cCCCH
Confidence 1111 14567888888998899999999999988743211 1111122 2222222 34567
Q ss_pred HHHHHHHHHHHHHHhhhccccccccccCCcchhhhhhhhHHHHHHHHHHhcccCCCCCCCCcchHHHHHHHHHHHHHHHH
Q 001381 818 EARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEICTYI 897 (1089)
Q Consensus 818 e~R~~al~sL~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~L~DYT~D~RGDVGSwVR~aa~~~l~~l~~l 897 (1089)
+.|..|..+|..++.. .. .. ...+ .-..+++.|+..|.+-. .-||..|..+|..++
T Consensus 331 ~v~~~A~~aL~nl~a~--~~---~~------~~~v---~~~g~i~~Lv~lL~~~~--------~~v~~~Aa~aL~Nl~-- 386 (510)
T 3ul1_B 331 NIQKEATWTMSNITAG--RQ---DQ------IQQV---VNHGLVPFLVGVLSKAD--------FKTQKEAAWAITNYT-- 386 (510)
T ss_dssp HHHHHHHHHHHHHTTS--CH---HH------HHHH---HHTTHHHHHHHHHHSSC--------HHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHcC--cH---HH------HHHH---HhcCCHHHHHHHHcCCC--------HHHHHHHHHHHHHHH--
Confidence 9999999999987531 10 00 0001 11236677777776532 348999999997764
Q ss_pred hhccCCCCCCCCCccccccCCCCccccccccCHHHHH-----HHHHHHHHHhhhhhHHHHHHHHHHHHHHhhc
Q 001381 898 LCKRDFVPSPEKPQEVKSELPGNVTAEKTLFDANLAT-----NLVAGIVKQAVEKMDKLREAAAKVLRRILYN 965 (1089)
Q Consensus 898 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~l~~~llrq~~EkiD~vR~~A~~~L~~l~~~ 965 (1089)
.+. +++.+. .++..|+++.-.+=.+++..+..+|..++..
T Consensus 387 -~~~---------------------------~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~ 431 (510)
T 3ul1_B 387 -SGG---------------------------TVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQA 431 (510)
T ss_dssp -HHC---------------------------CHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred -ccC---------------------------CHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 100 111111 2234555555566678888888888877654
No 39
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.17 E-value=3.8e-06 Score=89.92 Aligned_cols=187 Identities=14% Similarity=0.080 Sum_probs=137.3
Q ss_pred HHHhhcCCCChhHHHHHHHHHHHHHhhhCc---chhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHHhcC-CCCCCcccc
Q 001381 388 ILLSGLRDTDTVVRWSAAKGIGRITSCLTS---SLSEEVFSSVLELFSPGEGDGSWHGGCLALAELARRG-LLLPSSLPK 463 (1089)
Q Consensus 388 ~ll~~L~d~dt~vR~saAK~l~rI~~~L~~---~~a~~vi~~il~~l~~~~~~~~wHg~~LaLael~~~~-ll~p~~l~~ 463 (1089)
.+++.+.|++-.+|..++.+|+.+++.-|. ....++++.+...+..+.+.....++|-+++.|+..- -.+..+.+.
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ 98 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASA 98 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHH
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 366677899999999999999999986332 2236888888888842223445678999999998641 112245677
Q ss_pred hHHHHHHhhhhhccccccCCChhhhhhhhHHHHHhhhccCccchhHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHhc
Q 001381 464 VVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAAAAAFQENVG 543 (1089)
Q Consensus 464 il~~i~~~L~f~~r~~~~svG~~VRDAacfi~WslaR~~~~~~l~~~~~~l~~~Ll~~alfD~e~~iRRaAsAAlQE~vG 543 (1089)
++|.+...+... -..||++|+..+-+++...+. +.+.. .+..++-|++..+|..+...+..++.
T Consensus 99 ilp~ll~~l~d~--------~~~vr~~a~~aL~~~~~~~~~-------~~ll~-~l~~~l~~~~~~vr~~~l~~l~~~l~ 162 (242)
T 2qk2_A 99 CVPSLLEKFKEK--------KPNVVTALREAIDAIYASTSL-------EAQQE-SIVESLSNKNPSVKSETALFIARALT 162 (242)
T ss_dssp HHHHHHHGGGCC--------CHHHHHHHHHHHHHHHTTSCH-------HHHHH-HHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCC--------CHHHHHHHHHHHHHHHHcCCH-------HHHHH-HHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 888887776422 267999999999999887642 23333 34577889999999999999888877
Q ss_pred ccCCCCCCccceecccccchhhhHHHHHHHHHHHHhhhcchHHHHHHHHhCccCCCCHHHHHHHHHHHHHHHccCch
Q 001381 544 RQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNKICHWDKVLRELAAEALSALVKYDPE 620 (1089)
Q Consensus 544 R~g~~p~GI~il~~~d~~~v~~r~~a~~~va~~va~~~~Y~~~li~~Ll~~~l~h~D~~iR~laa~aL~~L~~~~~~ 620 (1089)
++|.- ..+..|...++++|+. .+.+.+.++|..|..+++.++...++
T Consensus 163 ~~~~~-----------------------------~~~~~~l~~l~p~l~~-~l~D~~~~VR~~A~~~l~~l~~~vg~ 209 (242)
T 2qk2_A 163 RTQPT-----------------------------ALNKKLLKLLTTSLVK-TLNEPDPTVRDSSAEALGTLIKLMGD 209 (242)
T ss_dssp TCCGG-----------------------------GCCHHHHHHHHHHHHH-HHTSSCHHHHHHHHHHHHHHHHHHCH
T ss_pred HcCCC-----------------------------CccHHHHHHHHHHHHH-HhcCCChHHHHHHHHHHHHHHHHcCH
Confidence 76521 0012356678888876 67899999999999999999876554
No 40
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.17 E-value=0.00013 Score=76.96 Aligned_cols=230 Identities=19% Similarity=0.131 Sum_probs=156.3
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHHHhhhCcc---h-hhhHHHHHHhhcCCCCCCcchHHHHHHHHHHHhcCCCCCCc
Q 001381 385 IIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSS---L-SEEVFSSVLELFSPGEGDGSWHGGCLALAELARRGLLLPSS 460 (1089)
Q Consensus 385 iI~~ll~~L~d~dt~vR~saAK~l~rI~~~L~~~---~-a~~vi~~il~~l~~~~~~~~wHg~~LaLael~~~~ll~p~~ 460 (1089)
.|+.|+..|.+.+..+|..|++.|+.++..-+.. + ...+++.+++.+...+ +.....++-+|+.++...--....
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTD-SEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHcCChHHHHH
Confidence 4678888999999999999999999998775411 1 2357888999887643 334456788888887652100001
Q ss_pred c--cchHHHHHHhhhhhccccccCCChhhhhhhhHHHHHhhhccCccchhHHHHHHHHHHHHHHhcCCCchhhHHHHHHH
Q 001381 461 L--PKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAAAAAF 538 (1089)
Q Consensus 461 l--~~il~~i~~~L~f~~r~~~~svG~~VRDAacfi~WslaR~~~~~~l~~~~~~l~~~Ll~~alfD~e~~iRRaAsAAl 538 (1089)
+ ..++|.+.+.|.-+ -..||..||.+++.+++.... .-..+++.=+...++..+-+++..+|+.|..++
T Consensus 82 ~~~~~~i~~l~~ll~~~--------~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L 152 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTST--------DSEVQKEAARALANIASGPDE-AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARAL 152 (252)
T ss_dssp HHHTTHHHHHHHHTTCS--------SHHHHHHHHHHHHHHTTSCHH-HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCC--------CHHHHHHHHHHHHHHHcCCHH-HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHH
Confidence 1 23577777666421 267999999999999874332 222233333455566888899999999999998
Q ss_pred HHHhcccCCCCCCccceecccccchhhhHHHHHHHHHHHHhhhcchHHHHHHHHhCccCCCCHHHHHHHHHHHHHHHccC
Q 001381 539 QENVGRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNKICHWDKVLRELAAEALSALVKYD 618 (1089)
Q Consensus 539 QE~vGR~g~~p~GI~il~~~d~~~v~~r~~a~~~va~~va~~~~Y~~~li~~Ll~~~l~h~D~~iR~laa~aL~~L~~~~ 618 (1089)
..+..... .. ...+.. ...++.|+. .+.+.|..+|..|+.+|++++..+
T Consensus 153 ~~l~~~~~------------------~~-------~~~~~~-----~~~i~~L~~-ll~~~~~~v~~~a~~~L~~l~~~~ 201 (252)
T 4hxt_A 153 ANIASGPD------------------EA-------IKAIVD-----AGGVEVLVK-LLTSTDSEVQKEAARALANIASGP 201 (252)
T ss_dssp HHHTTSCH------------------HH-------HHHHHH-----TTHHHHHHH-HTTCSCHHHHHHHHHHHHHHTTSB
T ss_pred HHHHcCCH------------------HH-------HHHHHH-----CcCHHHHHH-HHCCCCHHHHHHHHHHHHHHHcCC
Confidence 77632110 00 011111 125555654 566889999999999999999866
Q ss_pred chhhH----HHHHHHhccccCCCChhhHHHHHHHHHHHHHH
Q 001381 619 PEYFA----NFILEKLTPFTLSTDLCTRHGATLAAGEVVLA 655 (1089)
Q Consensus 619 ~~~~~----~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~ 655 (1089)
++... ..++|.+.+.+.+.+..+|.-++.+++.+...
T Consensus 202 ~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 242 (252)
T 4hxt_A 202 TSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSG 242 (252)
T ss_dssp HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcC
Confidence 55322 23678888888888889999889888888653
No 41
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=98.16 E-value=0.026 Score=71.95 Aligned_cols=271 Identities=14% Similarity=0.071 Sum_probs=150.4
Q ss_pred HHHHHHHHHHHHHccCchhhHHHHHHHhcccc----CCCChhhHHHHHHHHHHHHHHHhcccccCChhHHHHHHhhhHHH
Q 001381 603 LRELAAEALSALVKYDPEYFANFILEKLTPFT----LSTDLCTRHGATLAAGEVVLALCKYDYALPADKQKIVAGIVPGI 678 (1089)
Q Consensus 603 iR~laa~aL~~L~~~~~~~~~~~vlp~Ll~~l----~~~d~~~RHG~lLalaevl~~l~~~~~~~~~~~~~~i~~i~~~~ 678 (1089)
.|+.++..|..++...+..+...+++.+.+.+ .+.+|..|++++.+++.+..++... .......+..++..+
T Consensus 423 ~r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~----~~~~l~~l~~~l~~l 498 (963)
T 2x19_B 423 YRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVN----YSDVVPGLIGLIPRI 498 (963)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSS----CCSHHHHHHHHGGGS
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCch----hhHHHHHHHHHHHhC
Confidence 47888888988888777666666666665555 5678999999999999988765431 112233333333322
Q ss_pred HhhhhccCcchHHHHHHHHHHHHHhhhcCCCCchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCcchhh
Q 001381 679 EKARLYRGKGGEIMRSAVSRFIECISLSFVSLPEKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVG 758 (1089)
Q Consensus 679 ~~~~l~r~~~gelir~a~~~lI~~ls~~~lp~~~~~~~~~~~~L~~~L~~~~~~V~~aAa~Al~~l~~~y~~~~~~~~~~ 758 (1089)
. . ....+|.++|..++..+.- +.-+.+.+...+..+..+|.+ +.|+.+|+.|+..++...-..- ..-.+
T Consensus 499 ~-----~--~~~~vr~~~~~~l~~~~~~-l~~~~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l-~p~~~ 567 (963)
T 2x19_B 499 S-----I--SNVQLADTVMFTIGALSEW-LADHPVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDL-PPYAA 567 (963)
T ss_dssp C-----C--CSHHHHHHHHHHHHHTHHH-HHHCHHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGC-TTTHH
T ss_pred C-----C--CcHHHHHHHHHHHHHHHHH-HHhCHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHH-HhhHH
Confidence 2 1 2345899999999987641 111123444455556666654 7899999999999987531110 11125
Q ss_pred hhHHHHHHHhCC--CChhhhhhHHHHhhc----cchHhhhhhHHHHHHHHhhhccccCCCCCCCHHHHH---HHHHHHHH
Q 001381 759 GISLKYMEQLTD--PNPAIRRGSALALGV----LPYELLANSWRDVLLKLCSCCLIEENPEDRDTEARV---NAVRGLVS 829 (1089)
Q Consensus 759 ~~v~~~~~~L~s--~~~~~r~G~a~aLG~----lp~~~~~~~~~~i~~~L~~~~~~~~~~~~~d~e~R~---~al~sL~~ 829 (1089)
.+++.+.+.+.. .....+....-++|. +|.....+.+..++.-+......-.. ...+.+.|. .++.+|+.
T Consensus 568 ~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~-~~~~~~~~~~~~~~l~~l~~ 646 (963)
T 2x19_B 568 NIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAE-EIPNPSNKLAIVHILGLLSN 646 (963)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHS-SCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHH
Confidence 666666655543 233344444444444 33222234444555444333211000 112455544 66777777
Q ss_pred HHhhhccccccccccCCc-------chhhhhhhhHHHHHHHHHHhcccCCCCCCCCcchHHHHHHHHHHHHHH
Q 001381 830 VCETLTQSQENSLIHSGE-------DEISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEICT 895 (1089)
Q Consensus 830 i~~~~g~~~~~~~~~~~~-------~~~~~~~~~~~~i~~~Ll~~L~DYT~D~RGDVGSwVR~aa~~~l~~l~ 895 (1089)
++..++.....+....+. ..-.........+++.+...++.|..+ +-|++.++.+++.+.
T Consensus 647 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~v~e~~~~~l~~~~ 713 (963)
T 2x19_B 647 LFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLND------AQVVEAVCAIFEKSV 713 (963)
T ss_dssp HHHHCCSSCCC---------------CCCHHHHHHHHHHHHHHHHHHHHTTC------HHHHHHHHHHHHHHH
T ss_pred HHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhccCc------hHHHHHHHHHHHHHH
Confidence 777665321100000000 000122345677788888888776533 257888888888765
No 42
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=98.16 E-value=0.00082 Score=80.33 Aligned_cols=350 Identities=13% Similarity=0.091 Sum_probs=205.0
Q ss_pred HHHHhcCCCchhhHHHHHHHHHHhcccCCCCCCccceecccccchhhhHHHHHHHHHHHHhhhcchHHHHHHHHhCccC-
Q 001381 519 LTVACYDREVNCRRAAAAAFQENVGRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNKIC- 597 (1089)
Q Consensus 519 l~~alfD~e~~iRRaAsAAlQE~vGR~g~~p~GI~il~~~d~~~v~~r~~a~~~va~~va~~~~Y~~~li~~Ll~~~l~- 597 (1089)
++..+...+...+..|..++..++-+..+-| |+ .+-+ ..+++.|+. .+.
T Consensus 81 lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~--i~----------------------~ii~-----~G~ip~Lv~-lL~~ 130 (529)
T 3tpo_A 81 IVKGINSNNLESQLQATQAARKLLSREKQPP--ID----------------------NIIR-----AGLIPKFVS-FLGK 130 (529)
T ss_dssp HHHHHTSSCHHHHHHHHHHHHHHHTSSSCCC--HH----------------------HHHH-----TTHHHHHHH-HHTC
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHcCCCCch--HH----------------------HHHH-----CCCHHHHHH-HHcC
Confidence 3567778888888888888877776554433 10 0001 124555554 333
Q ss_pred CCCHHHHHHHHHHHHHHHccCchhhH----HHHHHHhccccCCCChhhHHHHHHHHHHHHHHHhcccccCChhHHHHHH-
Q 001381 598 HWDKVLRELAAEALSALVKYDPEYFA----NFILEKLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPADKQKIVA- 672 (1089)
Q Consensus 598 h~D~~iR~laa~aL~~L~~~~~~~~~----~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~l~~~~~~~~~~~~~~i~- 672 (1089)
+.++.++..||.+|++|+...++... .-.+|.|+..+.+.+..++..++.+|+.+... +++....+.
T Consensus 131 ~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~--------~~~~r~~i~~ 202 (529)
T 3tpo_A 131 TDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGA--------GSAFRDLVIK 202 (529)
T ss_dssp TTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT--------CHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcc--------CHHHHHHHHH
Confidence 56789999999999999987765432 23689999999999999999999999988631 112111111
Q ss_pred -hhhHHHHh---hhhccCcchHHHHHHHHHHHHHhhhcCCCCc-hhhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Q 001381 673 -GIVPGIEK---ARLYRGKGGEIMRSAVSRFIECISLSFVSLP-EKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQT 747 (1089)
Q Consensus 673 -~i~~~~~~---~~l~r~~~gelir~a~~~lI~~ls~~~lp~~-~~~~~~~~~~L~~~L~~~~~~V~~aAa~Al~~l~~~ 747 (1089)
+.++.+.. ...........++.++. .+..++...-|.. .......+..|...|.+++++++..|+.|+..+...
T Consensus 203 ~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~-~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~ 281 (529)
T 3tpo_A 203 HGAIDPLLALLAVPDLSTLACGYLRNLTW-TLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDG 281 (529)
T ss_dssp TTCHHHHHHTTCSSCGGGSCHHHHHHHHH-HHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSS
T ss_pred cCCcHHHHHHHhccchhHhHHHHHHHHHH-HHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhh
Confidence 11222211 10001111234444443 4444544332322 234456667777888999999999999998766531
Q ss_pred hhhccCcchhhhhHHHHHHHhCCCChhhhhhHHHHhhccchHhh--hhhH--HHHHHHHhhhccccCCCCCCCHHHHHHH
Q 001381 748 YMVAADSGVVGGISLKYMEQLTDPNPAIRRGSALALGVLPYELL--ANSW--RDVLLKLCSCCLIEENPEDRDTEARVNA 823 (1089)
Q Consensus 748 y~~~~~~~~~~~~v~~~~~~L~s~~~~~r~G~a~aLG~lp~~~~--~~~~--~~i~~~L~~~~~~~~~~~~~d~e~R~~a 823 (1089)
-...........+++.+++.|.+.++..+..++.+||.+-..-- +..+ ..++..|+..+ ...+.+.|..|
T Consensus 282 ~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL------~~~~~~i~~~a 355 (529)
T 3tpo_A 282 PNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL------TNPKTNIQKEA 355 (529)
T ss_dssp CHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHT------TCSSHHHHHHH
T ss_pred hhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHH------cCCCHHHHHHH
Confidence 00000000114577888888998888899988999988743210 0000 11223344433 23467899999
Q ss_pred HHHHHHHHhhhccccccccccCCcchhhhhhhhHHHHHHHHHHhcccCCCCCCCCcchHHHHHHHHHHHHHHHHhhccCC
Q 001381 824 VRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEICTYILCKRDF 903 (1089)
Q Consensus 824 l~sL~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~L~DYT~D~RGDVGSwVR~aa~~~l~~l~~ll~~~~~ 903 (1089)
+.+|..++.. .. . ....-.-..+++.|+..|.+-. .-||..|..+|..++ .+.
T Consensus 356 ~~aL~nl~~~--~~---~---------~~~~v~~~g~i~~Lv~lL~~~~--------~~v~~~A~~aL~nl~---~~~-- 408 (529)
T 3tpo_A 356 TWTMSNITAG--RQ---D---------QIQQVVNHGLVPFLVGVLSKAD--------FKTQKAAAWAITNYT---SGG-- 408 (529)
T ss_dssp HHHHHHHHTS--CH---H---------HHHHHHHTTHHHHHHHHHHSSC--------HHHHHHHHHHHHHHH---HHS--
T ss_pred HHHHHHHhcc--cH---H---------HHHHHHhcCcHHHHHHHhcCCC--------HHHHHHHHHHHHHHH---cCC--
Confidence 9999998631 10 0 0000011235677777776532 248999999987764 100
Q ss_pred CCCCCCCccccccCCCCccccccccCHHHHH-----HHHHHHHHHhhhhhHHHHHHHHHHHHHHhhc
Q 001381 904 VPSPEKPQEVKSELPGNVTAEKTLFDANLAT-----NLVAGIVKQAVEKMDKLREAAAKVLRRILYN 965 (1089)
Q Consensus 904 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~l~~~llrq~~EkiD~vR~~A~~~L~~l~~~ 965 (1089)
+++.+. .++..|+++.-.+=.+++..|..+|..++..
T Consensus 409 -------------------------~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~ 450 (529)
T 3tpo_A 409 -------------------------TVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQA 450 (529)
T ss_dssp -------------------------CHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred -------------------------CHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 111111 2344566666666778888888888887654
No 43
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=98.14 E-value=0.012 Score=73.72 Aligned_cols=453 Identities=13% Similarity=0.077 Sum_probs=253.5
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhCcchhhhH----HHHHHhhcCCCCCCcchHH-HHHHHHHHHhcCC--
Q 001381 383 EEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSLSEEV----FSSVLELFSPGEGDGSWHG-GCLALAELARRGL-- 455 (1089)
Q Consensus 383 E~iI~~ll~~L~d~dt~vR~saAK~l~rI~~~L~~~~a~~v----i~~il~~l~~~~~~~~wHg-~~LaLael~~~~l-- 455 (1089)
|.+++.|+..+.+.+..++-.|..+++.++.. ++..+-| ++.+...+.... ...|- +..+|..++..+-
T Consensus 289 ~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~--~~~R~~I~~~gv~~L~~Ll~s~~--~~vr~~Al~~L~kl~s~~~~d 364 (810)
T 3now_A 289 EGILQMILAMATTDDELQQRVACECLIAASSK--KDKAKALCEQGVDILKRLYHSKN--DGIRVRALVGLCKLGSYGGQD 364 (810)
T ss_dssp TTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTS--HHHHHTTHHHHHHHHHHHTTCSC--HHHHHHHHHHHHHHHTTTTTT
T ss_pred cchHHHHHHHhCCCCHHHHHHHHHHHHHHcCC--cHHHHHHHHcCcHHHHHHHcCCC--HHHHHHHHHHHHHhccccccC
Confidence 35677777888888999999999999998776 3333333 355555665322 22222 5556666654221
Q ss_pred ----CCC-CcccchHHHHHHhhhhhccccccCCChhhhhhhhHHHHHhhhccCccch-hHHHH-HHHHHHHHHHhcCCCc
Q 001381 456 ----LLP-SSLPKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDM-RNILE-QIAPHLLTVACYDREV 528 (1089)
Q Consensus 456 ----l~p-~~l~~il~~i~~~L~f~~r~~~~svG~~VRDAacfi~WslaR~~~~~~l-~~~~~-~l~~~Ll~~alfD~e~ 528 (1089)
.+. ..+..++|.+.+.|.-+.+ . ..+ -...||+|+---..... ..++. .=+...++.-+-..+.
T Consensus 365 ~~~~~~~~g~i~~Lv~~l~~lL~~~~~----d--~~v---~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~ 435 (810)
T 3now_A 365 AAIRPFGDGAALKLAEACRRFLIKPGK----D--KDI---RRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQ 435 (810)
T ss_dssp TSCCSSTTTHHHHHHHHHHHHHHCSSC----C--SSH---HHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCG
T ss_pred ccccchhhccHHHHHHHHHHHhcCCCC----C--HHH---HHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCCh
Confidence 111 1245567777766642210 0 123 33456777655332222 22221 1222223344445788
Q ss_pred hhhHHHHHHHHHHhc-c--cCCCCCCccceecccccch-----hhhHHHHHHHH---HHHHhhhcchHHHHHHHHhCccC
Q 001381 529 NCRRAAAAAFQENVG-R--QGNYPHGIDIVNTADYFSL-----SSRVYSYLHVA---VFIAQYEGYLYPFVDELLYNKIC 597 (1089)
Q Consensus 529 ~iRRaAsAAlQE~vG-R--~g~~p~GI~il~~~d~~~v-----~~r~~a~~~va---~~va~~~~Y~~~li~~Ll~~~l~ 597 (1089)
.+...|..+|.-+.- . ...+| .+...+.|..- ..... -..+. ..|.+. ..++.|+. .+.
T Consensus 436 ~i~~~al~~L~NLt~~~d~q~~~~---~l~~la~~s~~~v~~~~~ld~-~~~v~~r~~~Vvea-----GaVp~LV~-LL~ 505 (810)
T 3now_A 436 SCLYGVVTTFVNLCNAYEKQEMLP---EMIELAKFAKQHIPEEHELDD-VDFINKRITVLANE-----GITTALCA-LAK 505 (810)
T ss_dssp GGHHHHHHHHHHHTTCSCCCCCCC---SCGGGTTTTCCSCCCSSCHHH-HHHHHHHHHHHHHT-----THHHHHHH-HHT
T ss_pred HHHHHHHHHHHHHcCCchhhhhhH---HHHHHHHHhhccCcccccccc-HHHHHHHHHHHHHC-----cCHHHHHH-HHc
Confidence 999999999988763 2 12223 34444444311 00000 01111 122222 14555554 556
Q ss_pred CCCHHHHHHHHHHHHHHHccCchh---hH-HHHHHHhccccCCCChhhHHHHHHHHHHHHHHHhcccccCChhHH---HH
Q 001381 598 HWDKVLRELAAEALSALVKYDPEY---FA-NFILEKLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPADKQ---KI 670 (1089)
Q Consensus 598 h~D~~iR~laa~aL~~L~~~~~~~---~~-~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~l~~~~~~~~~~~~---~~ 670 (1089)
+.++.+|+.|+.+|++|+. +++. +. .-++|.|++.+.+.+...+.-+..+|+.+...-. ++.. ..
T Consensus 506 s~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~-------p~~~~~~~~ 577 (810)
T 3now_A 506 TESHNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITIN-------PEVSFSGQR 577 (810)
T ss_dssp CCCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSC-------HHHHTTTHH
T ss_pred CCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCC-------hhhhhcchh
Confidence 8999999999999999985 4432 11 2367888888888777888888888888875421 1110 01
Q ss_pred HHhhhHHHHhhhhccCcchHHHHHHHHHHHHHhhhcCCCCchhhH-HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhh
Q 001381 671 VAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLPEKTK-RSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYM 749 (1089)
Q Consensus 671 i~~i~~~~~~~~l~r~~~gelir~a~~~lI~~ls~~~lp~~~~~~-~~~~~~L~~~L~~~~~~V~~aAa~Al~~l~~~y~ 749 (1089)
+.+.++.+.+ +.......+....++.-+.+++...-.....++ ....+.|...|.+.++.||.+|+.++..+...--
T Consensus 578 ~~~aIppLv~--LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~ 655 (810)
T 3now_A 578 SLDVIRPLLN--LLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSED 655 (810)
T ss_dssp HHHTHHHHHH--TTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHH
T ss_pred hhcHHHHHHH--HhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChH
Confidence 2223344332 222212234444556666666642100011111 1234456667788999999999999987753100
Q ss_pred hccCcchh--hhhHHHHHHHhCCCChhhhhhHHHHhhccchHh---hhhhH--HHHHHHHhhhccccCCCCCCCHHHHHH
Q 001381 750 VAADSGVV--GGISLKYMEQLTDPNPAIRRGSALALGVLPYEL---LANSW--RDVLLKLCSCCLIEENPEDRDTEARVN 822 (1089)
Q Consensus 750 ~~~~~~~~--~~~v~~~~~~L~s~~~~~r~G~a~aLG~lp~~~---~~~~~--~~i~~~L~~~~~~~~~~~~~d~e~R~~ 822 (1089)
. ..... ...++-+++.+.+.+...++-++.||+.+.... .+.-+ ...+..|+..+ ...+.+.|..
T Consensus 656 ~--~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL------~s~d~~vq~~ 727 (810)
T 3now_A 656 V--IKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLI------ANPSPAVQHR 727 (810)
T ss_dssp H--HHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHH------TCSSHHHHHH
T ss_pred H--HHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHH------CCCCHHHHHH
Confidence 0 00000 246677778888888999999999999987531 11111 12445565554 3457899999
Q ss_pred HHHHHHHHHhhhccccccccccCCcchhhhhhhhHHHHHHHHHHhcccCCCCCCCCcchHHHHHHHHHHHHHH
Q 001381 823 AVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEICT 895 (1089)
Q Consensus 823 al~sL~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~L~DYT~D~RGDVGSwVR~aa~~~l~~l~ 895 (1089)
|+.+|..+... +. +....+.+ ..+++.|.+.+.+ .|. --.-|++.|+++|+.+.
T Consensus 728 A~~aL~NL~~~-s~----------e~~~~l~e---~G~i~~L~~LL~~--~d~---~~~~i~e~Al~aL~~ll 781 (810)
T 3now_A 728 GIVIILNMINA-GE----------EIAKKLFE---TDIMELLSGLGQL--PDD---TRAKAREVATQCLAAAE 781 (810)
T ss_dssp HHHHHHHHHTT-CH----------HHHHHHHT---STHHHHHTTSCCC--TTS---TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CH----------HHHHHHHH---CCCHHHHHHHHhC--ccc---CcHHHHHHHHHHHHHHH
Confidence 99999997641 10 00001111 1356777777764 121 23579999999999875
No 44
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.11 E-value=5.2e-05 Score=78.14 Aligned_cols=187 Identities=19% Similarity=0.102 Sum_probs=131.1
Q ss_pred cchHHHHHHHHhCccCCCCHHHHHHHHHHHHHHHccCchhhHHHHHHHhccccCCCChhhHHHHHHHHHHHHHHHhcccc
Q 001381 582 GYLYPFVDELLYNKICHWDKVLRELAAEALSALVKYDPEYFANFILEKLTPFTLSTDLCTRHGATLAAGEVVLALCKYDY 661 (1089)
Q Consensus 582 ~Y~~~li~~Ll~~~l~h~D~~iR~laa~aL~~L~~~~~~~~~~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~l~~~~~ 661 (1089)
.+.....+.++. .+.|.|..+|..|+.+|+++... ..+|.+++.+.+.+..+|..++.+++.+-
T Consensus 10 ~~~~~~~~~~i~-~L~~~~~~vr~~A~~~L~~~~~~-------~~~~~L~~~l~~~~~~vr~~a~~~L~~~~-------- 73 (201)
T 3ltj_A 10 HTDPEKVEMYIK-NLQDDSYYVRRAAAYALGKIGDE-------RAVEPLIKALKDEDAWVRRAAADALGQIG-------- 73 (201)
T ss_dssp CCCHHHHHHHHH-HTTCSCHHHHHHHHHHHHHHCCG-------GGHHHHHHHTTCSSHHHHHHHHHHHHHHC--------
T ss_pred ccCCcchHHHHH-HhcCCCHHHHHHHHHHHHhcCCh-------hHHHHHHHHHcCCCHHHHHHHHHHHHhhC--------
Confidence 344556777776 78899999999999999998642 24677777888899999999998888762
Q ss_pred cCChhHHHHHHhhhHHHHhhhhccCcchHHHHHHHHHHHHHhhhcCCCCchhhHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 001381 662 ALPADKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLPEKTKRSLLDTLNENLRHPNSQIQNAAVKAL 741 (1089)
Q Consensus 662 ~~~~~~~~~i~~i~~~~~~~~l~r~~~gelir~a~~~lI~~ls~~~lp~~~~~~~~~~~~L~~~L~~~~~~V~~aAa~Al 741 (1089)
++.....+.. .+. . ....+|.+++..+..+... + ....+...|.+++..||..|+.++
T Consensus 74 --~~~~~~~L~~---~l~------d-~~~~vr~~a~~aL~~~~~~------~----~~~~L~~~l~d~~~~vr~~a~~aL 131 (201)
T 3ltj_A 74 --DERAVEPLIK---ALK------D-EDGWVRQSAAVALGQIGDE------R----AVEPLIKALKDEDWFVRIAAAFAL 131 (201)
T ss_dssp --CGGGHHHHHH---HTT------C-SSHHHHHHHHHHHHHHCCG------G----GHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred --CHHHHHHHHH---HHc------C-CCHHHHHHHHHHHHHhCcH------H----HHHHHHHHHcCCCHHHHHHHHHHH
Confidence 1223222222 211 1 2345778878777765521 1 223355567899999999999998
Q ss_pred HHHHHHhhhccCcchhhhhHHHHHHHhCCCChhhhhhHHHHhhccchHhhhhhHHHHHHHHhhhccccCCCCCCCHHHHH
Q 001381 742 KPFVQTYMVAADSGVVGGISLKYMEQLTDPNPAIRRGSALALGVLPYELLANSWRDVLLKLCSCCLIEENPEDRDTEARV 821 (1089)
Q Consensus 742 ~~l~~~y~~~~~~~~~~~~v~~~~~~L~s~~~~~r~G~a~aLG~lp~~~~~~~~~~i~~~L~~~~~~~~~~~~~d~e~R~ 821 (1089)
..+.. ...++.+.+.+++.++..|..++.+||.+... ..+..|.... .+.+...|.
T Consensus 132 ~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~-------~~~~~L~~~l------~d~~~~vr~ 187 (201)
T 3ltj_A 132 GEIGD-----------ERAVEPLIKALKDEDGWVRQSAADALGEIGGE-------RVRAAMEKLA------ETGTGFARK 187 (201)
T ss_dssp HHHTC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCSH-------HHHHHHHHHH------HHCCHHHHH
T ss_pred HHhCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCch-------hHHHHHHHHH------hCCCHHHHH
Confidence 76521 46777888888888999999999999998643 2233333333 234689999
Q ss_pred HHHHHHHHH
Q 001381 822 NAVRGLVSV 830 (1089)
Q Consensus 822 ~al~sL~~i 830 (1089)
.|+.+|.++
T Consensus 188 ~A~~aL~~l 196 (201)
T 3ltj_A 188 VAVNYLETH 196 (201)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 999999874
No 45
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.06 E-value=0.00022 Score=89.87 Aligned_cols=309 Identities=17% Similarity=0.178 Sum_probs=166.6
Q ss_pred HHHHHHhhcC---CCChhHHHHHHHHHHHHHhhhCcchhhhHHHHHHhhcCCCC-------CCcchHHHHHHHHHHHhcC
Q 001381 385 IIEILLSGLR---DTDTVVRWSAAKGIGRITSCLTSSLSEEVFSSVLELFSPGE-------GDGSWHGGCLALAELARRG 454 (1089)
Q Consensus 385 iI~~ll~~L~---d~dt~vR~saAK~l~rI~~~L~~~~a~~vi~~il~~l~~~~-------~~~~wHg~~LaLael~~~~ 454 (1089)
.+..|-..|. ..+..+|..|+-|+|.|..--.. ++++.+.+.+.... .+...||+||+||-... |
T Consensus 393 gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~----~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~-G 467 (963)
T 4ady_A 393 GKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR----DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAM-G 467 (963)
T ss_dssp HHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH----HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHST-T
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH----HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhc-C
Confidence 4556666665 67889999999999999876553 34555555553222 13567999999987532 3
Q ss_pred CCCCCcccchHHHHHHhhhhhccccccCCChhhhhhhhHHHHHhhhccCccchhHHHHHHHHHHHHHHhcCCCchhhHHH
Q 001381 455 LLLPSSLPKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAA 534 (1089)
Q Consensus 455 ll~p~~l~~il~~i~~~L~f~~r~~~~svG~~VRDAacfi~WslaR~~~~~~l~~~~~~l~~~Ll~~alfD~e~~iRRaA 534 (1089)
.-- +++++.+...|..+. ..+|.+|++. +.-.|-..-=...++. |+..+.-|..-.+||++
T Consensus 468 S~~----eev~e~L~~~L~dd~--------~~~~~~AalA---LGli~vGTgn~~ai~~----LL~~~~e~~~e~vrR~a 528 (963)
T 4ady_A 468 SAN----IEVYEALKEVLYNDS--------ATSGEAAALG---MGLCMLGTGKPEAIHD----MFTYSQETQHGNITRGL 528 (963)
T ss_dssp CCC----HHHHHHHHHHHHTCC--------HHHHHHHHHH---HHHHHTTCCCHHHHHH----HHHHHHHCSCHHHHHHH
T ss_pred CCC----HHHHHHHHHHHhcCC--------HHHHHHHHHH---HhhhhcccCCHHHHHH----HHHHHhccCcHHHHHHH
Confidence 211 345555555554332 2355555554 4443322111122232 33333335567899998
Q ss_pred HHHHHHH-hcccCCCCCCccceecccccchhhhHHHHHHHHHHHHhhhcchHHHHHHHHhCccCCCCHHHHHHHHHHHHH
Q 001381 535 AAAFQEN-VGRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNKICHWDKVLRELAAEALSA 613 (1089)
Q Consensus 535 sAAlQE~-vGR~g~~p~GI~il~~~d~~~v~~r~~a~~~va~~va~~~~Y~~~li~~Ll~~~l~h~D~~iR~laa~aL~~ 613 (1089)
.-+|.-+ .||.. ..+.+++.|.. +.|+.+|..++-+++-
T Consensus 529 algLGll~~g~~e------------------------------------~~~~li~~L~~----~~dp~vRygaa~algl 568 (963)
T 4ady_A 529 AVGLALINYGRQE------------------------------------LADDLITKMLA----SDESLLRYGGAFTIAL 568 (963)
T ss_dssp HHHHHHHTTTCGG------------------------------------GGHHHHHHHHH----CSCHHHHHHHHHHHHH
T ss_pred HHHHHhhhCCChH------------------------------------HHHHHHHHHHh----CCCHHHHHHHHHHHHH
Confidence 8887653 34442 23345544443 4566666666666654
Q ss_pred HHccCchhhHHHHHHHhcccc-CCCChhhHHHHHHHHHHHHHHHhcccccCChhHHHHHHhhhHHHHhhhhccCcchHHH
Q 001381 614 LVKYDPEYFANFILEKLTPFT-LSTDLCTRHGATLAAGEVVLALCKYDYALPADKQKIVAGIVPGIEKARLYRGKGGEIM 692 (1089)
Q Consensus 614 L~~~~~~~~~~~vlp~Ll~~l-~~~d~~~RHG~lLalaevl~~l~~~~~~~~~~~~~~i~~i~~~~~~~~l~r~~~geli 692 (1089)
-+...+... .+..|+..+ .+.+-.+|.+++++||-|.-+ .++...++ +..+.+ .+...+
T Consensus 569 AyaGTGn~~---aIq~LL~~~~~d~~d~VRraAViaLGlI~~g--------~~e~v~rl---v~~L~~------~~d~~V 628 (963)
T 4ady_A 569 AYAGTGNNS---AVKRLLHVAVSDSNDDVRRAAVIALGFVLLR--------DYTTVPRI---VQLLSK------SHNAHV 628 (963)
T ss_dssp HTTTSCCHH---HHHHHHHHHHHCSCHHHHHHHHHHHHHHTSS--------SCSSHHHH---TTTGGG------CSCHHH
T ss_pred HhcCCCCHH---HHHHHHHHhccCCcHHHHHHHHHHHHhhccC--------CHHHHHHH---HHHHHh------cCCHHH
Confidence 433322211 122222222 223345666666666665321 11112222 221111 123456
Q ss_pred HHHHHHHHHHhhhcCCCCchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCcc---hhhhhHHHHHHHhC
Q 001381 693 RSAVSRFIECISLSFVSLPEKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSG---VVGGISLKYMEQLT 769 (1089)
Q Consensus 693 r~a~~~lI~~ls~~~lp~~~~~~~~~~~~L~~~L~~~~~~V~~aAa~Al~~l~~~y~~~~~~~---~~~~~v~~~~~~L~ 769 (1089)
|.+++.-++.++..+ |. ...+++|...+.++++.|+..|+.|+.-+... .+.. .+..+.+++.+.+.
T Consensus 629 R~gAalALGli~aGn-~~-----~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~g----tnna~~~rva~~l~~L~~~~~ 698 (963)
T 4ady_A 629 RCGTAFALGIACAGK-GL-----QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQ----QTEKLNPQVADINKNFLSVIT 698 (963)
T ss_dssp HHHHHHHHHHHTSSS-CC-----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTT----CCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCC-Cc-----HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcC----CccccchHHHHHHHHHHHHHh
Confidence 666666555554322 21 12333455556899999999999998765331 1111 23455566666663
Q ss_pred --CCChhhhhhHHHHhhccc
Q 001381 770 --DPNPAIRRGSALALGVLP 787 (1089)
Q Consensus 770 --s~~~~~r~G~a~aLG~lp 787 (1089)
..++.++-|++.|+|-+.
T Consensus 699 dk~~d~~~~fga~iAqGll~ 718 (963)
T 4ady_A 699 NKHQEGLAKFGACVAQGIMN 718 (963)
T ss_dssp CSSSCHHHHHHHHHHHHHHT
T ss_pred cccccHHHHHHHHHHHHHHh
Confidence 456889999999998875
No 46
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.03 E-value=7e-05 Score=77.77 Aligned_cols=183 Identities=20% Similarity=0.125 Sum_probs=126.9
Q ss_pred HHHHHHhCccCCCCHHHHHHHHHHHHHHHccCchhhHHHHHHHhccccCCCChhhHHHHHHHHHHHHHHHhcccccCChh
Q 001381 587 FVDELLYNKICHWDKVLRELAAEALSALVKYDPEYFANFILEKLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPAD 666 (1089)
Q Consensus 587 li~~Ll~~~l~h~D~~iR~laa~aL~~L~~~~~~~~~~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~l~~~~~~~~~~ 666 (1089)
.++.|+. .+.+.|..+|..|+.+|+++... ..+|.|++.+.+.+..+|..++.+++.+- ++.
T Consensus 20 ~~~~L~~-~L~~~~~~vR~~A~~~L~~~~~~-------~~~~~L~~~l~~~~~~vr~~a~~aL~~~~----------~~~ 81 (211)
T 3ltm_A 20 KVEMYIK-NLQDDSYYVRRAAAYALGKIGDE-------RAVEPLIKALKDEDAWVRRAAADALGQIG----------DER 81 (211)
T ss_dssp GHHHHHH-HTTCSSHHHHHHHHHHHHHHCCG-------GGHHHHHHHTTCSCHHHHHHHHHHHHHHC----------CGG
T ss_pred HHHHHHH-HHcCCCHHHHHHHHHHHHHhCCc-------cHHHHHHHHHcCCCHHHHHHHHHHHHhhC----------CHH
Confidence 3444444 46699999999999999998642 24677777888889999999998888863 122
Q ss_pred HHHHHHhhhHHHHhhhhccCcchHHHHHHHHHHHHHhhhcCCCCchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 001381 667 KQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLPEKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQ 746 (1089)
Q Consensus 667 ~~~~i~~i~~~~~~~~l~r~~~gelir~a~~~lI~~ls~~~lp~~~~~~~~~~~~L~~~L~~~~~~V~~aAa~Al~~l~~ 746 (1089)
....+. ..+ +. ....+|.+++..+..+... +. ...|...+.+++..|+..|+.++..+-.
T Consensus 82 ~~~~L~---~~l------~~-~~~~vr~~a~~aL~~~~~~------~~----~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 82 AVEPLI---KAL------KD-EDGWVRQSAAVALGQIGDE------RA----VEPLIKALKDEDWFVRIAAAFALGEIGD 141 (211)
T ss_dssp GHHHHH---HHT------TC-SSHHHHHHHHHHHHHHCCG------GG----HHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHH---HHH------cC-CCHHHHHHHHHHHHHhCcH------HH----HHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 322222 211 11 2346888888888766531 22 2335566789999999999999976521
Q ss_pred HhhhccCcchhhhhHHHHHHHhCCCChhhhhhHHHHhhccchHhhhhhHHHHHHHHhhhccccCCCCCCCHHHHHHHHHH
Q 001381 747 TYMVAADSGVVGGISLKYMEQLTDPNPAIRRGSALALGVLPYELLANSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRG 826 (1089)
Q Consensus 747 ~y~~~~~~~~~~~~v~~~~~~L~s~~~~~r~G~a~aLG~lp~~~~~~~~~~i~~~L~~~~~~~~~~~~~d~e~R~~al~s 826 (1089)
.+.++.+.+.+++.++..|..++.+||.+... ..+..|...+ .+.+.+.|..|+.+
T Consensus 142 -----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-------~~~~~L~~~l------~d~~~~vr~~A~~a 197 (211)
T 3ltm_A 142 -----------ERAVEPLIKALKDEDGWVRQSAADALGEIGGE-------RVRAAMEKLA------ETGTGFARKVAVNY 197 (211)
T ss_dssp -----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCSH-------HHHHHHHHHH------HHCCHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCch-------hHHHHHHHHH------hCCCHHHHHHHHHH
Confidence 45777888888889999999999999998642 2333343333 23468999999999
Q ss_pred HHHHH
Q 001381 827 LVSVC 831 (1089)
Q Consensus 827 L~~i~ 831 (1089)
|..+.
T Consensus 198 L~~~~ 202 (211)
T 3ltm_A 198 LETHK 202 (211)
T ss_dssp HHC--
T ss_pred HHhcC
Confidence 98764
No 47
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.02 E-value=2.9e-05 Score=80.69 Aligned_cols=183 Identities=22% Similarity=0.202 Sum_probs=121.6
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHHHhhhCcchhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHHhcCCCCCCcccch
Q 001381 385 IIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSLSEEVFSSVLELFSPGEGDGSWHGGCLALAELARRGLLLPSSLPKV 464 (1089)
Q Consensus 385 iI~~ll~~L~d~dt~vR~saAK~l~rI~~~L~~~~a~~vi~~il~~l~~~~~~~~wHg~~LaLael~~~~ll~p~~l~~i 464 (1089)
.++.|+..|.|++..+|..++..|+++.. .+.++.+++.+.+. +......++-+|+++.. +..
T Consensus 20 ~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-------~~~~~~L~~~l~~~-~~~vr~~a~~aL~~~~~---------~~~ 82 (211)
T 3ltm_A 20 KVEMYIKNLQDDSYYVRRAAAYALGKIGD-------ERAVEPLIKALKDE-DAWVRRAAADALGQIGD---------ERA 82 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------GGGHHHHHHHTTCS-CHHHHHHHHHHHHHHCC---------GGG
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCC-------ccHHHHHHHHHcCC-CHHHHHHHHHHHHhhCC---------HHH
Confidence 45556667789999999999999998754 35678888888643 22233445666665532 456
Q ss_pred HHHHHHhhhhhccccccCCChhhhhhhhHHHHHhhhccCccchhHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHhcc
Q 001381 465 VPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAAAAAFQENVGR 544 (1089)
Q Consensus 465 l~~i~~~L~f~~r~~~~svG~~VRDAacfi~WslaR~~~~~~l~~~~~~l~~~Ll~~alfD~e~~iRRaAsAAlQE~vGR 544 (1089)
+|.+.+.|..+ -..||-+|+..+..+ -+++.+ ..+...+-|++..+|.+|..||..+
T Consensus 83 ~~~L~~~l~~~--------~~~vr~~a~~aL~~~---~~~~~~---------~~L~~~l~d~~~~vr~~a~~aL~~~--- 139 (211)
T 3ltm_A 83 VEPLIKALKDE--------DGWVRQSAAVALGQI---GDERAV---------EPLIKALKDEDWFVRIAAAFALGEI--- 139 (211)
T ss_dssp HHHHHHHTTCS--------SHHHHHHHHHHHHHH---CCGGGH---------HHHHHHTTCSSHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHcCC--------CHHHHHHHHHHHHHh---CcHHHH---------HHHHHHHhCCCHHHHHHHHHHHHHc---
Confidence 78877776322 256888776665444 333222 2345677899999999999997553
Q ss_pred cCCCCCCccceecccccchhhhHHHHHHHHHHHHhhhcchHHHHHHHHhCccCCCCHHHHHHHHHHHHHHHccCchhhHH
Q 001381 545 QGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNKICHWDKVLRELAAEALSALVKYDPEYFAN 624 (1089)
Q Consensus 545 ~g~~p~GI~il~~~d~~~v~~r~~a~~~va~~va~~~~Y~~~li~~Ll~~~l~h~D~~iR~laa~aL~~L~~~~~~~~~~ 624 (1089)
|.- + .++.|.. .+.+.|..+|..|+.+|+.+.. .
T Consensus 140 -~~~---------------------------------~----~~~~L~~-~l~d~~~~vr~~a~~aL~~~~~-------~ 173 (211)
T 3ltm_A 140 -GDE---------------------------------R----AVEPLIK-ALKDEDGWVRQSAADALGEIGG-------E 173 (211)
T ss_dssp -CCG---------------------------------G----GHHHHHH-HTTCSSHHHHHHHHHHHHHHCS-------H
T ss_pred -CCH---------------------------------H----HHHHHHH-HHcCCCHHHHHHHHHHHHHhCc-------h
Confidence 320 1 2223332 4458899999999999999853 2
Q ss_pred HHHHHhccccCCCChhhHHHHHHHHHHHH
Q 001381 625 FILEKLTPFTLSTDLCTRHGATLAAGEVV 653 (1089)
Q Consensus 625 ~vlp~Ll~~l~~~d~~~RHG~lLalaevl 653 (1089)
.+++.|.+.+.+.+..+|..+.-+|+.+-
T Consensus 174 ~~~~~L~~~l~d~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 174 RVRAAMEKLAETGTGFARKVAVNYLETHK 202 (211)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHC--
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 35666666667788888988887777654
No 48
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.98 E-value=3.6e-05 Score=83.53 Aligned_cols=205 Identities=11% Similarity=0.042 Sum_probs=146.1
Q ss_pred HHHhhcCCCChhHHHHHHHHHHH-HHhh---hC--cchhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHHhc-C-CCCC-
Q 001381 388 ILLSGLRDTDTVVRWSAAKGIGR-ITSC---LT--SSLSEEVFSSVLELFSPGEGDGSWHGGCLALAELARR-G-LLLP- 458 (1089)
Q Consensus 388 ~ll~~L~d~dt~vR~saAK~l~r-I~~~---L~--~~~a~~vi~~il~~l~~~~~~~~wHg~~LaLael~~~-~-ll~p- 458 (1089)
.+.+.+.+++...|-.|...|+. +++. +. ..-..+++..+...+....+....-.+|-+|++++.. + --+.
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 46777899999999999999999 8753 33 2223578888888884333334456789999999842 1 1234
Q ss_pred CcccchHHHHHHhhhhhccccccCCChhhhhhhhHHHHHhhhccCccchhHHHHHHHHHHHHHHhcCCCchhhHHHHHHH
Q 001381 459 SSLPKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAAAAAF 538 (1089)
Q Consensus 459 ~~l~~il~~i~~~L~f~~r~~~~svG~~VRDAacfi~WslaR~~~~~~l~~~~~~l~~~Ll~~alfD~e~~iRRaAsAAl 538 (1089)
.+...++|.++..+.- ....||+++++.+=+++...+|....++++.+...|+ .++-...+.+|.++...+
T Consensus 100 ~y~~~llp~ll~~l~d--------kk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~-~~l~~k~~~vk~~al~~l 170 (249)
T 2qk1_A 100 DYVSLVFTPLLDRTKE--------KKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDIL-EHMKHKTPQIRMECTQLF 170 (249)
T ss_dssp HHHHHHHHHHHHGGGC--------CCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHH-HHTTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC--------CCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHH-HHHcCCChHHHHHHHHHH
Confidence 5667788888755521 2267999999999999998876443334666766654 677778999999999998
Q ss_pred HHHhcccCCCCCCccceecccccchhhhHHHHHHHHHHHHhhhcch-HHHHHHHHhCccCCCCHHHHHHHHHHHHHHHcc
Q 001381 539 QENVGRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYL-YPFVDELLYNKICHWDKVLRELAAEALSALVKY 617 (1089)
Q Consensus 539 QE~vGR~g~~p~GI~il~~~d~~~v~~r~~a~~~va~~va~~~~Y~-~~li~~Ll~~~l~h~D~~iR~laa~aL~~L~~~ 617 (1089)
...+...+..| ..|..|. +.+++.|.. .+.+-|.++|..|..+++.++..
T Consensus 171 ~~~~~~~~~~~----------------------------~~l~~~l~~~iip~l~~-~l~D~~~~VR~aA~~~l~~i~~~ 221 (249)
T 2qk1_A 171 NASMKEEKDGY----------------------------STLQRYLKDEVVPIVIQ-IVNDTQPAIRTIGFESFAILIKI 221 (249)
T ss_dssp HHHHHHCCSCS----------------------------HHHHHHHTTTHHHHHHH-HHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCcc----------------------------hhHHHHHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHHH
Confidence 88877666432 1232355 677777775 67789999999999999999987
Q ss_pred CchhhHHHHHHHh
Q 001381 618 DPEYFANFILEKL 630 (1089)
Q Consensus 618 ~~~~~~~~vlp~L 630 (1089)
-++.-....++.+
T Consensus 222 vG~~~~~p~l~~L 234 (249)
T 2qk1_A 222 FGMNTFVKTLEHL 234 (249)
T ss_dssp HCSGGGHHHHHHS
T ss_pred hCHHHHHHHHHHH
Confidence 6654343444443
No 49
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=97.98 E-value=9.4e-05 Score=76.18 Aligned_cols=185 Identities=23% Similarity=0.207 Sum_probs=124.9
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhCcchhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHHhcCCCCCCcc
Q 001381 382 LEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSLSEEVFSSVLELFSPGEGDGSWHGGCLALAELARRGLLLPSSL 461 (1089)
Q Consensus 382 vE~iI~~ll~~L~d~dt~vR~saAK~l~rI~~~L~~~~a~~vi~~il~~l~~~~~~~~wHg~~LaLael~~~~ll~p~~l 461 (1089)
-+...+.++..|.|+|..+|..|+.+|+++.. .+.++.+++.+.+. +......++-+|+++..
T Consensus 12 ~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-------~~~~~~L~~~l~~~-~~~vr~~a~~~L~~~~~--------- 74 (201)
T 3ltj_A 12 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-------ERAVEPLIKALKDE-DAWVRRAAADALGQIGD--------- 74 (201)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCC---------
T ss_pred CCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC-------hhHHHHHHHHHcCC-CHHHHHHHHHHHHhhCC---------
Confidence 35677888899999999999999999998764 25677788888533 22233446666665532
Q ss_pred cchHHHHHHhhhhhccccccCCChhhhhhhhHHHHHhhhccCccchhHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHH
Q 001381 462 PKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAAAAAFQEN 541 (1089)
Q Consensus 462 ~~il~~i~~~L~f~~r~~~~svG~~VRDAacfi~WslaR~~~~~~l~~~~~~l~~~Ll~~alfD~e~~iRRaAsAAlQE~ 541 (1089)
+..+|.+.+.|..+. ..||-+|+..+..+ -+++.+ ..+...+-|++..+|.+|..|+..
T Consensus 75 ~~~~~~L~~~l~d~~--------~~vr~~a~~aL~~~---~~~~~~---------~~L~~~l~d~~~~vr~~a~~aL~~- 133 (201)
T 3ltj_A 75 ERAVEPLIKALKDED--------GWVRQSAAVALGQI---GDERAV---------EPLIKALKDEDWFVRIAAAFALGE- 133 (201)
T ss_dssp GGGHHHHHHHTTCSS--------HHHHHHHHHHHHHH---CCGGGH---------HHHHHHTTCSSHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHcCCC--------HHHHHHHHHHHHHh---CcHHHH---------HHHHHHHcCCCHHHHHHHHHHHHH-
Confidence 466788877764322 45777776654444 333222 234567789999999999999744
Q ss_pred hcccCCCCCCccceecccccchhhhHHHHHHHHHHHHhhhcchHHHHHHHHhCccCCCCHHHHHHHHHHHHHHHccCchh
Q 001381 542 VGRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNKICHWDKVLRELAAEALSALVKYDPEY 621 (1089)
Q Consensus 542 vGR~g~~p~GI~il~~~d~~~v~~r~~a~~~va~~va~~~~Y~~~li~~Ll~~~l~h~D~~iR~laa~aL~~L~~~~~~~ 621 (1089)
.|. ++ .++.|.. .+.+.|..+|..|+.+|+.+..
T Consensus 134 ---~~~---------------------------------~~----~~~~L~~-~l~d~~~~vr~~A~~aL~~~~~----- 167 (201)
T 3ltj_A 134 ---IGD---------------------------------ER----AVEPLIK-ALKDEDGWVRQSAADALGEIGG----- 167 (201)
T ss_dssp ---HTC---------------------------------GG----GHHHHHH-HTTCSSHHHHHHHHHHHHHHCS-----
T ss_pred ---hCC---------------------------------HH----HHHHHHH-HHcCCCHHHHHHHHHHHHHhCc-----
Confidence 332 01 2233332 4558899999999999999942
Q ss_pred hHHHHHHHhccccCCCChhhHHHHHHHHHHH
Q 001381 622 FANFILEKLTPFTLSTDLCTRHGATLAAGEV 652 (1089)
Q Consensus 622 ~~~~vlp~Ll~~l~~~d~~~RHG~lLalaev 652 (1089)
...++.|.+.+.+.+..+|..+.-+++.+
T Consensus 168 --~~~~~~L~~~l~d~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 168 --ERVRAAMEKLAETGTGFARKVAVNYLETH 196 (201)
T ss_dssp --HHHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred --hhHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 23566666666778888998887777664
No 50
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=97.96 E-value=0.00015 Score=76.99 Aligned_cols=225 Identities=14% Similarity=0.097 Sum_probs=149.9
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHHHhhhCcch-----hhhHHHHHHhhcCCCCCCcchHHHHHHHHHHHhcCCCCCCc
Q 001381 386 IEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSL-----SEEVFSSVLELFSPGEGDGSWHGGCLALAELARRGLLLPSS 460 (1089)
Q Consensus 386 I~~ll~~L~d~dt~vR~saAK~l~rI~~~L~~~~-----a~~vi~~il~~l~~~~~~~~wHg~~LaLael~~~~ll~p~~ 460 (1089)
.+++...|.+.|..+|..|++.|.++... +.+. ...+|+.+++.+.... +.....++-+|+.++...--....
T Consensus 14 ~~~~~~~L~s~~~~~~~~a~~~L~~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 14 LPQMTQQLNSDDMQEQLSATRKFSQILSD-GNEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp HHHHHHHHHSSCSSHHHHHHHHHHHHHHH-HHHHHHHHHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CCchHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHHHH
Confidence 45666777889999999999999888776 3322 2347788999887643 333455777888887632100001
Q ss_pred c--cchHHHHHHhhhhhccccccCCChhhhhhhhHHHHHhhhccCccchhHHHHHHHHHHHHHHhcCCCchhhHHHHHHH
Q 001381 461 L--PKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAAAAAF 538 (1089)
Q Consensus 461 l--~~il~~i~~~L~f~~r~~~~svG~~VRDAacfi~WslaR~~~~~~l~~~~~~l~~~Ll~~alfD~e~~iRRaAsAAl 538 (1089)
+ ..++|.+.+.|.-+ -..||..|+.+++.++...... ...+++.=+...++..+-+++..+|+.|..+|
T Consensus 92 i~~~g~i~~L~~lL~~~--------~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L 162 (252)
T 4db8_A 92 VIDAGALPALVQLLSSP--------NEQILQEALWALSNIASGGNEQ-IQAVIDAGALPALVQLLSSPNEQILQEALWAL 162 (252)
T ss_dssp HHHTTHHHHHHHGGGCS--------CHHHHHHHHHHHHHHTTSCHHH-HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHcCC--------CHHHHHHHHHHHHHhhcCCchH-HHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHH
Confidence 1 23677777666432 1579999999999998765431 12333433555667888899999999999998
Q ss_pred HHHhcccCCCCCCccceecccccchhhhHHHHHHHHHHHHhhhcchHHHHHHHHhCccCCCCHHHHHHHHHHHHHHHccC
Q 001381 539 QENVGRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNKICHWDKVLRELAAEALSALVKYD 618 (1089)
Q Consensus 539 QE~vGR~g~~p~GI~il~~~d~~~v~~r~~a~~~va~~va~~~~Y~~~li~~Ll~~~l~h~D~~iR~laa~aL~~L~~~~ 618 (1089)
..+..... +....+.+ ...++.|+. .+.+.|..+|+.|+.+|+.++..+
T Consensus 163 ~~l~~~~~-------------------------~~~~~~~~-----~~~i~~L~~-ll~~~~~~v~~~a~~~L~~l~~~~ 211 (252)
T 4db8_A 163 SNIASGGN-------------------------EQIQAVID-----AGALPALVQ-LLSSPNEQILQEALWALSNIASGG 211 (252)
T ss_dssp HHHTTSCH-------------------------HHHHHHHH-----TTCHHHHHH-GGGCSSHHHHHHHHHHHHHHTTSC
T ss_pred HHHHcCCh-------------------------HHHHHHHH-----CCCHHHHHH-HHCCCCHHHHHHHHHHHHHHhcCC
Confidence 77632110 00011111 124455554 556779999999999999999766
Q ss_pred chhh---H-HHHHHHhccccCCCChhhHHHHHHHHHHH
Q 001381 619 PEYF---A-NFILEKLTPFTLSTDLCTRHGATLAAGEV 652 (1089)
Q Consensus 619 ~~~~---~-~~vlp~Ll~~l~~~d~~~RHG~lLalaev 652 (1089)
++.. . ...+|.+.+.+.+.+..+|.-++.+|+.+
T Consensus 212 ~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l 249 (252)
T 4db8_A 212 NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 249 (252)
T ss_dssp HHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTT
T ss_pred HHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 6432 2 23778888888888888998888877654
No 51
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=97.89 E-value=0.1 Score=66.76 Aligned_cols=429 Identities=11% Similarity=0.031 Sum_probs=208.4
Q ss_pred hhHHHHHHHHHHHHHhhhCcchhhhHHHHHHhhcCC--CCCCcch---HHHHHHHHHHHhcCCCCC---C---cccchHH
Q 001381 398 TVVRWSAAKGIGRITSCLTSSLSEEVFSSVLELFSP--GEGDGSW---HGGCLALAELARRGLLLP---S---SLPKVVP 466 (1089)
Q Consensus 398 t~vR~saAK~l~rI~~~L~~~~a~~vi~~il~~l~~--~~~~~~w---Hg~~LaLael~~~~ll~p---~---~l~~il~ 466 (1089)
..+|-+|+..|..++...+......+++.+-+.+.. ..+...| ++++++++-++..|.-.. . .+.++.+
T Consensus 375 ~s~R~aa~~~L~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~ 454 (960)
T 1wa5_C 375 DTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVD 454 (960)
T ss_dssp -CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHH
T ss_pred cCcHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHH
Confidence 378999999999999999866666666666555531 0112336 579999999986543111 1 1124444
Q ss_pred HHH----HhhhhhccccccCCChhhhhhhhHHHHHhhhccCccchhHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHh
Q 001381 467 VIV----KALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAAAAAFQENV 542 (1089)
Q Consensus 467 ~i~----~~L~f~~r~~~~svG~~VRDAacfi~WslaR~~~~~~l~~~~~~l~~~Ll~~alfD~e~~iRRaAsAAlQE~v 542 (1089)
.+. ..|... . ..-..||.+||.++--++.-+.+ .++..++.. ++..+-|++..+|.+|..||+.++
T Consensus 455 ~l~~~v~p~l~~~--~---~~~p~vr~~a~~~lg~~~~~~~~----~~l~~~l~~-l~~~L~d~~~~V~~~A~~Al~~~~ 524 (960)
T 1wa5_C 455 FFTKEIAPDLTSN--N---IPHIILRVDAIKYIYTFRNQLTK----AQLIELMPI-LATFLQTDEYVVYTYAAITIEKIL 524 (960)
T ss_dssp HHHHHTHHHHHCS--S---CSCHHHHHHHHHHHHHTGGGSCH----HHHHHHHHH-HHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHhHHHhcCC--C---CCCceehHHHHHHHHHHHhhCCH----HHHHHHHHH-HHHHhCCCChhHHHHHHHHHHHHH
Confidence 432 222111 0 11256999998666555544433 344555444 446677888999999999998765
Q ss_pred cccCCCCCCccceecccccchhhhHHHHHHHHHHHHhhhcchHHHHHHHHhCccCCC-----CHHHHHHHHHHHHHHHcc
Q 001381 543 GRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNKICHW-----DKVLRELAAEALSALVKY 617 (1089)
Q Consensus 543 GR~g~~p~GI~il~~~d~~~v~~r~~a~~~va~~va~~~~Y~~~li~~Ll~~~l~h~-----D~~iR~laa~aL~~L~~~ 617 (1089)
--.+.-..|=..... ..+..|.+.++++|+. .+... +......+.++++.++..
T Consensus 525 ~~~~~~~~~~~~~~~--------------------~~l~p~l~~ll~~L~~-ll~~~~~~~~~~~~~e~l~~al~~vv~~ 583 (960)
T 1wa5_C 525 TIRESNTSPAFIFHK--------------------EDISNSTEILLKNLIA-LILKHGSSPEKLAENEFLMRSIFRVLQT 583 (960)
T ss_dssp TCBSCSSSCCBSSCG--------------------GGTTTTHHHHHHHHHH-HHHTTCCCHHHHTSCHHHHHHHHHHHHH
T ss_pred hcccccccccccccH--------------------HHhhhhHHHHHHHHHH-HHHhccCCCCcccccHHHHHHHHHHHHH
Confidence 321100000000000 1234677888888875 22221 011224666777776653
Q ss_pred Cchh---hHHHHHHHhcccc-----CCCChhhHHHHHHHHHHHHHHHhcccccCChhHHHHHHhhhHHHHhhhhccCcch
Q 001381 618 DPEY---FANFILEKLTPFT-----LSTDLCTRHGATLAAGEVVLALCKYDYALPADKQKIVAGIVPGIEKARLYRGKGG 689 (1089)
Q Consensus 618 ~~~~---~~~~vlp~Ll~~l-----~~~d~~~RHG~lLalaevl~~l~~~~~~~~~~~~~~i~~i~~~~~~~~l~r~~~g 689 (1089)
.++. ....+++.+...+ ...+...+|+.+-+++.++.+... .......+.+..++..+...... .--
T Consensus 584 ~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~---~~~~~~~~~~~p~~~~iL~~~~~--~~~ 658 (960)
T 1wa5_C 584 SEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQR---QNLPLLVDSMMPTFLTVFSEDIQ--EFI 658 (960)
T ss_dssp HTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCG---GGHHHHHHHHHHHHHHHHHTTCT--TTH
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCc---chHHHHHHHHHHHHHHHHHhhhH--hhH
Confidence 3321 2334555554333 234667788888888888765110 00111223344444444332110 001
Q ss_pred HHHHHHHHHHHHHhhhcCCCCchhhHHHHHHHHH--HhcCCCcHHHHHHHHHHHHHHHHHhhhccCcchhhhhHHHHHHH
Q 001381 690 EIMRSAVSRFIECISLSFVSLPEKTKRSLLDTLN--ENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQ 767 (1089)
Q Consensus 690 elir~a~~~lI~~ls~~~lp~~~~~~~~~~~~L~--~~L~~~~~~V~~aAa~Al~~l~~~y~~~~~~~~~~~~v~~~~~~ 767 (1089)
+.+.+.++.++... ..+ .+.. ......+. ..+... ..+ ..+..++..++..+.... . ..+.++..+.+.
T Consensus 659 ~~~~~i~~~l~~~~--~~~--~~~~-~~~~~~l~~~~~~~~~-~~~-~~~~~~L~~~~~~~~~~~-~-~~~~~l~~~~~~ 729 (960)
T 1wa5_C 659 PYVFQIIAFVVEQS--ATI--PESI-KPLAQPLLAPNVWELK-GNI-PAVTRLLKSFIKTDSSIF-P-DLVPVLGIFQRL 729 (960)
T ss_dssp HHHHHHHHHHHHHC--SSC--CTTT-GGGHHHHTSGGGGCCT-TTH-HHHHHHHHHHHHHHGGGC-S-CSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--cCC--CHHH-HHHHHHHcCHHHhcCC-CCc-hhHHHHHHHHHHhChHHH-H-HHHHHHHHHHHH
Confidence 12333344444322 112 1111 11222233 333333 222 244555555544331100 0 012233333333
Q ss_pred hCCCChhhhhhHHHHhhc----cchHhhhhhHHHHHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHhhhccccccccc
Q 001381 768 LTDPNPAIRRGSALALGV----LPYELLANSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQSQENSLI 843 (1089)
Q Consensus 768 L~s~~~~~r~G~a~aLG~----lp~~~~~~~~~~i~~~L~~~~~~~~~~~~~d~e~R~~al~sL~~i~~~~g~~~~~~~~ 843 (1089)
+.+... ...+...+|. +|...+.+.+..++..++..+.. .+..+.|+..+..+..++...|...
T Consensus 730 ~~~~~~--~~~a~~ll~~i~~~~~~~~~~~yl~~i~~~l~~~l~~-----~~~~~~~~~~l~~~~~~~~~~~~~~----- 797 (960)
T 1wa5_C 730 IASKAY--EVHGFDLLEHIMLLIDMNRLRPYIKQIAVLLLQRLQN-----SKTERYVKKLTVFFGLISNKLGSDF----- 797 (960)
T ss_dssp HTCTTT--HHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHGGGS-----SCCHHHHHHHHHHHHHHHHHHCHHH-----
T ss_pred hCCCcc--cchHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhh-----CCcHhHHHHHHHHHHHHHHHcCHHH-----
Confidence 333321 2333344443 45443567788888888777642 2345677777777766654332210
Q ss_pred cCCcchhhhh----hhhHHH-HHHHHHHhcccCCCCCCCCcchHHHHHHHHHHHHHH
Q 001381 844 HSGEDEISLF----HLIKNE-VMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEICT 895 (1089)
Q Consensus 844 ~~~~~~~~~~----~~~~~~-i~~~Ll~~L~DYT~D~RGDVGSwVR~aa~~~l~~l~ 895 (1089)
.+... ...+.. +.+..+..+... .|.+-|..++-|+..++
T Consensus 798 -----~~~~l~~i~~~~f~~~~~~~w~~~~~~~-------~~~~erk~~~~gl~~ll 842 (960)
T 1wa5_C 798 -----LIHFIDEVQDGLFQQIWGNFIITTLPTI-------GNLLDRKIALIGVLNMV 842 (960)
T ss_dssp -----HHHHHHTTSTTHHHHHHHHTHHHHGGGC-------CSHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHhcchhHHHHHHHHHhccchhhc-------cCHHHHHHHHHHHHHHH
Confidence 00000 011111 222444444443 24678999999997764
No 52
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.88 E-value=0.00012 Score=92.21 Aligned_cols=206 Identities=19% Similarity=0.134 Sum_probs=121.3
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhCcchhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHHhcCCCCCCccc
Q 001381 383 EEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSLSEEVFSSVLELFSPGEGDGSWHGGCLALAELARRGLLLPSSLP 462 (1089)
Q Consensus 383 E~iI~~ll~~L~d~dt~vR~saAK~l~rI~~~L~~~~a~~vi~~il~~l~~~~~~~~wHg~~LaLael~~~~ll~p~~l~ 462 (1089)
|++++.|...|.|.+..+|+.||=++|.|---=+ ..+++..++..+....++....++.++||.+.... +
T Consensus 471 eev~e~L~~~L~dd~~~~~~~AalALGli~vGTg---n~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~-------~ 540 (963)
T 4ady_A 471 IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTG---KPEAIHDMFTYSQETQHGNITRGLAVGLALINYGR-------Q 540 (963)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCC---CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC-------G
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccC---CHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCC-------h
Confidence 3455555555666666778788888777732111 12344444443322334444566777777665443 3
Q ss_pred chHHHHHHhhhhhccccccCCChhhhhhhhHHHHHhhhccCccchhHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHH-
Q 001381 463 KVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAAAAAFQEN- 541 (1089)
Q Consensus 463 ~il~~i~~~L~f~~r~~~~svG~~VRDAacfi~WslaR~~~~~~l~~~~~~l~~~Ll~~alfD~e~~iRRaAsAAlQE~- 541 (1089)
+.++.++..|.-+ -..+||=+++++. +=+|...--. ..+..||-.+.-|.+-.+||+|.-|+...
T Consensus 541 e~~~~li~~L~~~-------~dp~vRygaa~al---glAyaGTGn~----~aIq~LL~~~~~d~~d~VRraAViaLGlI~ 606 (963)
T 4ady_A 541 ELADDLITKMLAS-------DESLLRYGGAFTI---ALAYAGTGNN----SAVKRLLHVAVSDSNDDVRRAAVIALGFVL 606 (963)
T ss_dssp GGGHHHHHHHHHC-------SCHHHHHHHHHHH---HHHTTTSCCH----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-------CCHHHHHHHHHHH---HHHhcCCCCH----HHHHHHHHHhccCCcHHHHHHHHHHHHhhc
Confidence 4455554444322 1356777777653 2222211000 12223555555677778888877776543
Q ss_pred hcccCCCCCCccceecccccchhhhHHHHHHHHHHHHhhhcchHHHHHHHHhCccCCCCHHHHHHHHHHHHHHHccCchh
Q 001381 542 VGRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNKICHWDKVLRELAAEALSALVKYDPEY 621 (1089)
Q Consensus 542 vGR~g~~p~GI~il~~~d~~~v~~r~~a~~~va~~va~~~~Y~~~li~~Ll~~~l~h~D~~iR~laa~aL~~L~~~~~~~ 621 (1089)
+|. ++....++++|.. +.|+.+|+.|+-|||.++...|.
T Consensus 607 ~g~------------------------------------~e~v~rlv~~L~~----~~d~~VR~gAalALGli~aGn~~- 645 (963)
T 4ady_A 607 LRD------------------------------------YTTVPRIVQLLSK----SHNAHVRCGTAFALGIACAGKGL- 645 (963)
T ss_dssp SSS------------------------------------CSSHHHHTTTGGG----CSCHHHHHHHHHHHHHHTSSSCC-
T ss_pred cCC------------------------------------HHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhccCCCc-
Confidence 121 1223344544443 78999999999999999987764
Q ss_pred hHHHHHHHhccccCCCChhhHHHHHHHHHHHHHH
Q 001381 622 FANFILEKLTPFTLSTDLCTRHGATLAAGEVVLA 655 (1089)
Q Consensus 622 ~~~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~ 655 (1089)
..++..|.+.+.+.|..+|+|++.+++.|..+
T Consensus 646 --~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~g 677 (963)
T 4ady_A 646 --QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQ 677 (963)
T ss_dssp --HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTT
T ss_pred --HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcC
Confidence 23455555566788999999999999999754
No 53
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=97.83 E-value=0.00021 Score=75.21 Aligned_cols=228 Identities=18% Similarity=0.128 Sum_probs=146.3
Q ss_pred HHHHHhCccCCCCHHHHHHHHHHHHHHHccCchhhH----HHHHHHhccccCCCChhhHHHHHHHHHHHHHHHhcccccC
Q 001381 588 VDELLYNKICHWDKVLRELAAEALSALVKYDPEYFA----NFILEKLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYAL 663 (1089)
Q Consensus 588 i~~Ll~~~l~h~D~~iR~laa~aL~~L~~~~~~~~~----~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~l~~~~~~~ 663 (1089)
++.|+. .+.+.|.++|..|+.+|+.++...++... ..++|.+++.+.+.+..+|.-++.+++.+...
T Consensus 4 i~~L~~-~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-------- 74 (252)
T 4hxt_A 4 VEKLVK-LLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG-------- 74 (252)
T ss_dssp HHHHHH-HTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS--------
T ss_pred HHHHHH-HHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC--------
Confidence 445554 56788899999999999999988764322 24788888888988999999888888887531
Q ss_pred ChhHHHHHH--hhhHHHHhhhhccCcchHHHHHHHHHHHHHhhhcCCCCchhhH-HHHHHHHHHhcCCCcHHHHHHHHHH
Q 001381 664 PADKQKIVA--GIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLPEKTK-RSLLDTLNENLRHPNSQIQNAAVKA 740 (1089)
Q Consensus 664 ~~~~~~~i~--~i~~~~~~~~l~r~~~gelir~a~~~lI~~ls~~~lp~~~~~~-~~~~~~L~~~L~~~~~~V~~aAa~A 740 (1089)
.++....+. +.++.+.+ +.+. +.+-++..++..+..++...-.....+. ......+...+.++++.++..|+.+
T Consensus 75 ~~~~~~~~~~~~~i~~l~~--ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~ 151 (252)
T 4hxt_A 75 PDEAIKAIVDAGGVEVLVK--LLTS-TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARA 151 (252)
T ss_dssp CHHHHHHHHHTTHHHHHHH--HTTC-SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred ChHHHHHHHHCCCHHHHHH--HHcC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHH
Confidence 122111111 22333221 1221 3456888889999888742211111111 2345556677899999999999999
Q ss_pred HHHHHHHhhhccCcchhhhhHHHHHHHhCCCChhhhhhHHHHhhccchHhhh--hh--HHHHHHHHhhhccccCCCCCCC
Q 001381 741 LKPFVQTYMVAADSGVVGGISLKYMEQLTDPNPAIRRGSALALGVLPYELLA--NS--WRDVLLKLCSCCLIEENPEDRD 816 (1089)
Q Consensus 741 l~~l~~~y~~~~~~~~~~~~v~~~~~~L~s~~~~~r~G~a~aLG~lp~~~~~--~~--~~~i~~~L~~~~~~~~~~~~~d 816 (1089)
+..+....-.....-.....++.+++.+++.++..+..++.+|+.+...... .. ...+++.|+..+. ..+
T Consensus 152 L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~------~~~ 225 (252)
T 4hxt_A 152 LANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLT------STD 225 (252)
T ss_dssp HHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGG------CSC
T ss_pred HHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHC------CCc
Confidence 9877531000000001145788888889988899999999999888542110 00 1134556666652 346
Q ss_pred HHHHHHHHHHHHHHHhh
Q 001381 817 TEARVNAVRGLVSVCET 833 (1089)
Q Consensus 817 ~e~R~~al~sL~~i~~~ 833 (1089)
.+.|..|+.+|..++..
T Consensus 226 ~~v~~~a~~~L~~l~~~ 242 (252)
T 4hxt_A 226 SEVQKEAQRALENIKSG 242 (252)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 79999999999998764
No 54
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.80 E-value=0.00042 Score=75.01 Aligned_cols=192 Identities=14% Similarity=0.069 Sum_probs=131.1
Q ss_pred ccccCCCChhhHHHHHHHHHH-HHHHHhcccccCChhHHHHHHhhhHHHHhhhhccCcchHHHHHHHHHHHHHhhhcCCC
Q 001381 631 TPFTLSTDLCTRHGATLAAGE-VVLALCKYDYALPADKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVS 709 (1089)
Q Consensus 631 l~~l~~~d~~~RHG~lLalae-vl~~l~~~~~~~~~~~~~~i~~i~~~~~~~~l~r~~~gelir~a~~~lI~~ls~~~lp 709 (1089)
.+.+.+.+|..|+.++.+++. ++.+..+.... ..+..+-+..+.+.+.+. ....++.++|..++.++. ++.
T Consensus 22 ~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~-~~~~~~~~~~L~~~l~~D------~n~~v~~~A~~al~~la~-~l~ 93 (249)
T 2qk1_A 22 QERITSSKWKDRVEALEEFWDSVLSQTKKLKST-SQNYSNLLGIYGHIIQKD------ANIQAVALAAQSVELICD-KLK 93 (249)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCT-TCCCHHHHHHHHHHHHHC------SCHHHHHHHHHHHHHHHH-HHC
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHHhcCCccccC-cccHHHHHHHHHHHhccC------CCHHHHHHHHHHHHHHHH-hcc
Confidence 345678999999999999998 87653332210 111111122222222121 233578999999998884 332
Q ss_pred --Cch-hhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCcchhhhhHHHHHHHhCCCChhhhhhHHHHhhcc
Q 001381 710 --LPE-KTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLTDPNPAIRRGSALALGVL 786 (1089)
Q Consensus 710 --~~~-~~~~~~~~~L~~~L~~~~~~V~~aAa~Al~~l~~~y~~~~~~~~~~~~v~~~~~~L~s~~~~~r~G~a~aLG~l 786 (1089)
--. .....++..+.+.+.+....|+.+|..|+..++...-........+.+++.++..+++.++..|.+....|+.+
T Consensus 94 ~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~ 173 (249)
T 2qk1_A 94 TPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNAS 173 (249)
T ss_dssp TTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 212 45556677777888999999999999999999886311000001368889999999888999999998888887
Q ss_pred chHh------hhhhH-HHHHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHhhhcc
Q 001381 787 PYEL------LANSW-RDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQ 836 (1089)
Q Consensus 787 p~~~------~~~~~-~~i~~~L~~~~~~~~~~~~~d~e~R~~al~sL~~i~~~~g~ 836 (1089)
-... +.+.+ ..++..|..++ .+.+.+.|..|+.+++.++..+|.
T Consensus 174 ~~~~~~~~~~l~~~l~~~iip~l~~~l------~D~~~~VR~aA~~~l~~i~~~vG~ 224 (249)
T 2qk1_A 174 MKEEKDGYSTLQRYLKDEVVPIVIQIV------NDTQPAIRTIGFESFAILIKIFGM 224 (249)
T ss_dssp HHHCCSCSHHHHHHHTTTHHHHHHHHH------TCSSHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHcCCcchhHHHHHHHHHHHHHHHHh------cCCCHHHHHHHHHHHHHHHHHhCH
Confidence 5332 23456 67888888886 466899999999999999998885
No 55
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.79 E-value=0.0011 Score=81.00 Aligned_cols=311 Identities=14% Similarity=0.128 Sum_probs=178.2
Q ss_pred hhHHHHHhhhccCccchhHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHhcccCCCCCCccceecccccchhhhHHHH
Q 001381 491 AAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAAAAAFQENVGRQGNYPHGIDIVNTADYFSLSSRVYSY 570 (1089)
Q Consensus 491 acfi~WslaR~~~~~~l~~~~~~l~~~Ll~~alfD~e~~iRRaAsAAlQE~vGR~g~~p~GI~il~~~d~~~v~~r~~a~ 570 (1089)
.+|..|+..=.-+++ +-.++.+.+...+-|++..+|-.|..++.- .+.
T Consensus 93 l~YL~l~~~~~~~~e-----~~~L~iN~l~kDl~~~n~~ir~lALr~L~~----i~~----------------------- 140 (621)
T 2vgl_A 93 IGYLFISVLVNSNSE-----LIRLINNAIKNDLASRNPTFMGLALHCIAN----VGS----------------------- 140 (621)
T ss_dssp HHHHHHHHSCCCCHH-----HHHHHHHHHHHHHHSCCHHHHHHHHHHHHH----HCC-----------------------
T ss_pred HHHHHHHHHccCCcH-----HHHHHHHHHHHhcCCCCHHHHHHHHHHhhc----cCC-----------------------
Confidence 357766654443432 224677777888889999999988888633 322
Q ss_pred HHHHHHHHhhhcchHHHHHHHHhCcc--CCCCHHHHHHHHHHHHHHHccCchhhH-HHHHHHhccccCCCChhhHHHHHH
Q 001381 571 LHVAVFIAQYEGYLYPFVDELLYNKI--CHWDKVLRELAAEALSALVKYDPEYFA-NFILEKLTPFTLSTDLCTRHGATL 647 (1089)
Q Consensus 571 ~~va~~va~~~~Y~~~li~~Ll~~~l--~h~D~~iR~laa~aL~~L~~~~~~~~~-~~vlp~Ll~~l~~~d~~~RHG~lL 647 (1089)
+++.+.+++.+.+ .+ .|.++.+|+-|+-|+.++...+|+.+. ...++.+.+.+.+.|..+.-+++.
T Consensus 141 ----------~e~~~~l~~~v~~-~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~ 209 (621)
T 2vgl_A 141 ----------REMAEAFAGEIPK-ILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAATS 209 (621)
T ss_dssp ----------HHHHHHHTTHHHH-HHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCCCSCHHHHHHHTTCSCHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHH-HHhCCCCCHHHHHHHHHHHHHHHHhChhhcCchhHHHHHHHHhCCCCccHHHHHHH
Confidence 1233344444443 55 799999999999999999999887543 145666666777888888888888
Q ss_pred HHHHHHHHHhcccccCChhHHHHHHhhhHHHHh-------hhhccCcchHHHHHHHHHHHHHhhhcCCCCchhhHHHHHH
Q 001381 648 AAGEVVLALCKYDYALPADKQKIVAGIVPGIEK-------ARLYRGKGGEIMRSAVSRFIECISLSFVSLPEKTKRSLLD 720 (1089)
Q Consensus 648 alaevl~~l~~~~~~~~~~~~~~i~~i~~~~~~-------~~l~r~~~gelir~a~~~lI~~ls~~~lp~~~~~~~~~~~ 720 (1089)
++.++...-.+. . ......+..++..+.. .-.|.|...+++...+.+++..++.. -..+....+.+
T Consensus 210 ~l~~i~~~~~~~---~-~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~---~d~~~~~~l~~ 282 (621)
T 2vgl_A 210 LITTLAQKNPEE---F-KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPP---EDPAVRGRLTE 282 (621)
T ss_dssp HHHHHHHHCHHH---H-TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSC---SSHHHHHHHHH
T ss_pred HHHHHHHhChHH---H-HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCC---CCHHHHHHHHH
Confidence 888876531100 0 0011122222222211 11234445677776666766655421 11222222222
Q ss_pred HHHHh------------cCCCcH--HHHHHHHHHHHHHHHHhhhccCcchhhhhHHHHHHHhCCCChhhhhhHHHHhhcc
Q 001381 721 TLNEN------------LRHPNS--QIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLTDPNPAIRRGSALALGVL 786 (1089)
Q Consensus 721 ~L~~~------------L~~~~~--~V~~aAa~Al~~l~~~y~~~~~~~~~~~~v~~~~~~L~s~~~~~r~G~a~aLG~l 786 (1089)
.+... +.|.+. .|...++.++-.+. ...+.....+..+...|.+.++..|.-...+|..+
T Consensus 283 ~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~------~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l 356 (621)
T 2vgl_A 283 CLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHD------SEPNLLVRACNQLGQFLQHRETNLRYLALESMCTL 356 (621)
T ss_dssp HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcC------CcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHH
Confidence 22221 122233 56665555553321 11222345556666666667777777665565555
Q ss_pred ch-----HhhhhhHHHHHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHhhhccccccccccCCcchhhhhhhhHHHHH
Q 001381 787 PY-----ELLANSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVM 861 (1089)
Q Consensus 787 p~-----~~~~~~~~~i~~~L~~~~~~~~~~~~~d~e~R~~al~sL~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~ 861 (1089)
-. ..+..+...++.+| . .+.|...|..++.-|..++. +.++..|+
T Consensus 357 ~~~~~~~~~~~~~~~~i~~~L----~-----~d~d~~Ir~~aL~lL~~l~~---------------------~~Nv~~Iv 406 (621)
T 2vgl_A 357 ASSEFSHEAVKTHIETVINAL----K-----TERDVSVRQRAVDLLYAMCD---------------------RSNAQQIV 406 (621)
T ss_dssp TTCTTTHHHHHTTHHHHHHHH----T-----TCCCHHHHHHHHHHHHHHCC---------------------HHHHHHHH
T ss_pred HhccCcHHHHHHHHHHHHHHh----c-----cCCCHhHHHHHHHHHHHHcC---------------------hhhHHHHH
Confidence 21 22333444455444 1 15678899999998887652 24566777
Q ss_pred HHHHHhcccCCCCCCCCcchHHHHHHHHHHHHHH
Q 001381 862 TSLFKALDDYSVDNRGDVGSWVREAAVDGLEICT 895 (1089)
Q Consensus 862 ~~Ll~~L~DYT~D~RGDVGSwVR~aa~~~l~~l~ 895 (1089)
..|..-+.+- ..-.|..++.+|..+.
T Consensus 407 ~eL~~yl~~~--------d~~~~~~~v~~I~~la 432 (621)
T 2vgl_A 407 AEMLSYLETA--------DYSIREEIVLKVAILA 432 (621)
T ss_dssp HHHHHHHHHC--------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc--------CHHHHHHHHHHHHHHH
Confidence 7777666541 1246777788887764
No 56
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.74 E-value=0.061 Score=68.48 Aligned_cols=456 Identities=13% Similarity=0.039 Sum_probs=233.4
Q ss_pred CCChhHHHHHHHHHHHHHhh----hCcchhhhHHHHHHhhcCCC--CCCcchHHHHHHHHHHHhcCCCCCCcccchHHHH
Q 001381 395 DTDTVVRWSAAKGIGRITSC----LTSSLSEEVFSSVLELFSPG--EGDGSWHGGCLALAELARRGLLLPSSLPKVVPVI 468 (1089)
Q Consensus 395 d~dt~vR~saAK~l~rI~~~----L~~~~a~~vi~~il~~l~~~--~~~~~wHg~~LaLael~~~~ll~p~~l~~il~~i 468 (1089)
+.+..||+.||..|.+.+.+ +|.+....+=+.+++.+... ......+..|.++++++++.. |+.-|++++-+
T Consensus 69 ~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~--p~~Wp~~l~~l 146 (963)
T 2x19_B 69 DKVPEIQYFGASALHIKISRYWSDIPTDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMM--PDAWPCAVADM 146 (963)
T ss_dssp TSCHHHHHHHHHHHHHHHHHCGGGSCGGGHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHT--TTTSTTHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHhCHHhCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhC--ccccchHHHHH
Confidence 67899999999999998875 67766666666666655321 123445789999999999975 45567888777
Q ss_pred HHhhhhhccccccC-CChhhhhhhhHHHHHhhhcc-C-----------ccchhHHHHHHHHHHHHHHhcCCCc--hhhHH
Q 001381 469 VKALHYDIRRGSHS-VGSHVRDAAAYVCWAFGRAY-C-----------HTDMRNILEQIAPHLLTVACYDREV--NCRRA 533 (1089)
Q Consensus 469 ~~~L~f~~r~~~~s-vG~~VRDAacfi~WslaR~~-~-----------~~~l~~~~~~l~~~Ll~~alfD~e~--~iRRa 533 (1089)
...+.- ...+ -+...+..+..++-.+.... + .+.+...+..++. ++...+-+.+. .++++
T Consensus 147 ~~~~~~----~~~~~~~~~~~~~~l~iL~~l~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~-ll~~~l~~~~~~~~~~~~ 221 (963)
T 2x19_B 147 VRLFQA----EDSPVDGQGRCLALLELLTVLPEEFQTSRLPQYRKGLVRTSLAVECGAVFP-LLEQLLQQPSSPSCVRQK 221 (963)
T ss_dssp HHHHCC----------CHHHHHHHHHHHHHHHHHHTTCCC---------CCSGGGHHHHHH-HHHHHHSCTTCCHHHHHH
T ss_pred HHHHhh----hccCCCcHHHHHHHHHHHHhCHHHHhcccCcHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCCCchHHHHH
Confidence 765521 0111 13456778888877776321 1 1223334443333 22233323222 27777
Q ss_pred HHHHHHHHhcccCCCCCC-ccceec-ccccch-hhhHHHHHHHHHHHHhh--hc---chHHHHHHHHhC------ccCCC
Q 001381 534 AAAAFQENVGRQGNYPHG-IDIVNT-ADYFSL-SSRVYSYLHVAVFIAQY--EG---YLYPFVDELLYN------KICHW 599 (1089)
Q Consensus 534 AsAAlQE~vGR~g~~p~G-I~il~~-~d~~~v-~~r~~a~~~va~~va~~--~~---Y~~~li~~Ll~~------~l~h~ 599 (1089)
+..++...+. .|..... -.++.. .++... ..+..|..-+...+... +. +...+++.++.. .+..-
T Consensus 222 ~l~~l~~wi~-~~~~~~~~~~ll~~l~~~l~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 300 (963)
T 2x19_B 222 VLKCFSSWVQ-LEVPLQDCEALIQAAFAALQDSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNG 300 (963)
T ss_dssp HHHHHHHHHT-SSCCGGGTHHHHHHHHHHTTSTTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTT
T ss_pred HHHHHHHHHc-CCCCcccchHHHHHHHHHhCCchHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCC
Confidence 7777766553 3321000 000000 011111 12233322223333321 11 222222222221 11234
Q ss_pred CHHHHHHHHHHHHHHHccCchhhH---------HHHHHHhccccCC-----CChhhHHHHHHHHHHHHHHHhcccccCCh
Q 001381 600 DKVLRELAAEALSALVKYDPEYFA---------NFILEKLTPFTLS-----TDLCTRHGATLAAGEVVLALCKYDYALPA 665 (1089)
Q Consensus 600 D~~iR~laa~aL~~L~~~~~~~~~---------~~vlp~Ll~~l~~-----~d~~~RHG~lLalaevl~~l~~~~~~~~~ 665 (1089)
|....+--++.+..+....+..+. ..+++.++..... .+..+.+-++-....++..+........+
T Consensus 301 d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~ 380 (963)
T 2x19_B 301 DMETSHGICRIAVALGENHSRALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQA 380 (963)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhHHHHHcCccchHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhH
Confidence 555555555666665543332221 2344555543332 23334444443334443322110000000
Q ss_pred hH----HHHHHhhhHHHHhhhhcc-------Cc--chH---HHHHHHHHHHHHhhhcCCCCchhhHHHHHHHHHHhc---
Q 001381 666 DK----QKIVAGIVPGIEKARLYR-------GK--GGE---IMRSAVSRFIECISLSFVSLPEKTKRSLLDTLNENL--- 726 (1089)
Q Consensus 666 ~~----~~~i~~i~~~~~~~~l~r-------~~--~ge---lir~a~~~lI~~ls~~~lp~~~~~~~~~~~~L~~~L--- 726 (1089)
.. ...+..+++.+...-.|. .- .++ -.|.++..++..++.. .+ .+++..+...+...+
T Consensus 381 ~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~-~~--~~~l~~~~~~l~~~l~~~ 457 (963)
T 2x19_B 381 VYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEM-LG--AELLSNLYDKLGRLLTSS 457 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHH-HT--HHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHH-cc--HHHHHHHHHHHHHHHHhc
Confidence 00 111112222221111010 00 011 2355666666665531 11 234555556666666
Q ss_pred -CCCcHHHHHHHHHHHHHHHHHhhhccCcchhhhhHHHHHHH---hCCCChhhhhhHHHHhhccchHhhh--hhHHHHHH
Q 001381 727 -RHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQ---LTDPNPAIRRGSALALGVLPYELLA--NSWRDVLL 800 (1089)
Q Consensus 727 -~~~~~~V~~aAa~Al~~l~~~y~~~~~~~~~~~~v~~~~~~---L~s~~~~~r~G~a~aLG~lp~~~~~--~~~~~i~~ 800 (1089)
...+-..+++|.-|+..+..... . .....+.+.+.. +.++++..|..++.++|.+...+.. ..+..++.
T Consensus 458 ~~~~~w~~~eaal~al~~i~~~~~-~----~~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~ 532 (963)
T 2x19_B 458 EEPYSWQHTEALLYGFQSIAETID-V----NYSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMINSVLP 532 (963)
T ss_dssp CCSCCHHHHHHHHHHHHHHTTSCC-S----SCCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHH
T ss_pred CCCCchHHHHHHHHHHHHHHhhcC-c----hhhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 55666778888888877654321 1 112333444433 3456888999999999999876542 34556666
Q ss_pred HHhhhccccCCCCCCCHHHHHHHHHHHHHHHhhhccccccccccCCcchhhhhhhhHHHHHHHHHHhcccCCCCCCCCcc
Q 001381 801 KLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGDVG 880 (1089)
Q Consensus 801 ~L~~~~~~~~~~~~~d~e~R~~al~sL~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~L~DYT~D~RGDVG 880 (1089)
.|+..+. +...|..|..+|..++...+.. ..+..+.+++.|...++ ++++.
T Consensus 533 ~l~~~l~--------~~~V~~~A~~al~~l~~~~~~~---------------l~p~~~~il~~l~~~l~------~~~~~ 583 (963)
T 2x19_B 533 LVLHALG--------NPELSVSSVSTLKKICRECKYD---------------LPPYAANIVAVSQDVLM------KQIHK 583 (963)
T ss_dssp HHHHHTT--------CGGGHHHHHHHHHHHHHHTGGG---------------CTTTHHHHHHHHHHHHH------TTCSC
T ss_pred HHHHHhC--------CchHHHHHHHHHHHHHHHHHHH---------------HHhhHHHHHHHHHHHhc------cCCCC
Confidence 6666642 2567889999999998754321 22567788888887775 34567
Q ss_pred hHHHHHHHHHHHHHH
Q 001381 881 SWVREAAVDGLEICT 895 (1089)
Q Consensus 881 SwVR~aa~~~l~~l~ 895 (1089)
.-+|+..++++..++
T Consensus 584 ~~~~~~~~eai~~i~ 598 (963)
T 2x19_B 584 TSQCMWLMQALGFLL 598 (963)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 789999999998764
No 57
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=97.67 E-value=0.041 Score=70.30 Aligned_cols=459 Identities=10% Similarity=0.047 Sum_probs=232.7
Q ss_pred CCChhHHHHHHHHHHHHHhh----hCcchhhhHHHHHHhhcCC--CCCCcchHHHHHHHHHHHhcCCCCCCcccchHHHH
Q 001381 395 DTDTVVRWSAAKGIGRITSC----LTSSLSEEVFSSVLELFSP--GEGDGSWHGGCLALAELARRGLLLPSSLPKVVPVI 468 (1089)
Q Consensus 395 d~dt~vR~saAK~l~rI~~~----L~~~~a~~vi~~il~~l~~--~~~~~~wHg~~LaLael~~~~ll~p~~l~~il~~i 468 (1089)
+.+..||+.||..|.+.+.+ +|.+...++=+.+++.+.. .......+..|.++++++++... .-|++++-+
T Consensus 51 ~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p---~Wp~~l~~l 127 (971)
T 2x1g_F 51 GKSQEVQFFGAITLHSKLMKHWHEVPPENREELKQKILESIVRFAGGPKIVLNRLCISLGAYIVHMLG---EWPGAIEEV 127 (971)
T ss_dssp TSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTC---C------HH
T ss_pred CCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccc---cccHHHHHH
Confidence 57899999999999998865 7777666666666665422 11234567899999999999752 446666665
Q ss_pred HHhhhhhccccccCCChhhhhhhhHHHHHhhhc---cCc--------cchhH---HHHHHHHHHHHHHhcCCC-----ch
Q 001381 469 VKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRA---YCH--------TDMRN---ILEQIAPHLLTVACYDRE-----VN 529 (1089)
Q Consensus 469 ~~~L~f~~r~~~~svG~~VRDAacfi~WslaR~---~~~--------~~l~~---~~~~l~~~Ll~~alfD~e-----~~ 529 (1089)
...+.-+ ..+..-+...+..+..++-.+... +.+ +.+.. .+-.++..++... .++. ..
T Consensus 128 ~~~~~~~--~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~-~~~~~~~~~~~ 204 (971)
T 2x1g_F 128 INTFQNQ--RMPNVSADVQLWIMLEVLTAIPEEAQVIHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQ-MNRVWDAEAYS 204 (971)
T ss_dssp HHHHHHT--C----CHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHHTTHHHHHHHHHHHHHHH-TTSCCCHHHHH
T ss_pred HHHHhcc--ccccCCCHHHHHHHHHHHHHhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCCCCCccchh
Confidence 5443211 000000234667777777766531 111 11222 2222333333221 1111 27
Q ss_pred hhHHHHHHHHHHhcccCCCCCCc--cceecc-c----cc-------------ch-hhhHHHHHHHHHHHHh-----hhcc
Q 001381 530 CRRAAAAAFQENVGRQGNYPHGI--DIVNTA-D----YF-------------SL-SSRVYSYLHVAVFIAQ-----YEGY 583 (1089)
Q Consensus 530 iRRaAsAAlQE~vGR~g~~p~GI--~il~~~-d----~~-------------~v-~~r~~a~~~va~~va~-----~~~Y 583 (1089)
+++++..+++-.+.- +.+|-++ .++..+ + |+ .. ..|..|..-+...+.. +..+
T Consensus 205 ~~~~al~~l~~~~~~-~~ip~~~~~~ll~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~ 283 (971)
T 2x1g_F 205 NMNRAVKCVGTWIKN-IGYTIEGCVTITAVLLEVVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKT 283 (971)
T ss_dssp HHHHHHHHHHHHHHH-SCCCGGGHHHHHHHHHHHHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHH
T ss_pred HHHHHHHHHHHHHhh-CCcCccccccHHHHHHhhhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHH
Confidence 888888888876642 2233221 011100 0 00 01 1111221111112221 1122
Q ss_pred hHHHHHHHHhC------ccCCCCH---HHHHHHHHHHHHHHccCchhh--------------HHHHHHHhccccC-----
Q 001381 584 LYPFVDELLYN------KICHWDK---VLRELAAEALSALVKYDPEYF--------------ANFILEKLTPFTL----- 635 (1089)
Q Consensus 584 ~~~li~~Ll~~------~l~h~D~---~iR~laa~aL~~L~~~~~~~~--------------~~~vlp~Ll~~l~----- 635 (1089)
...+++.+++. .+.+-|. +...-.++.+..+....+..+ ...+++.++..+.
T Consensus 284 ~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~ 363 (971)
T 2x1g_F 284 AFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIY 363 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCT
T ss_pred HHHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCC
Confidence 33344444330 1233352 555555666666664433222 2244555555432
Q ss_pred CCChhhHHHHHHHHHHHHHHHhcccc-cCChhH----HHHHHhhhHHHHhhhhccCc------ch------HHHHHHHHH
Q 001381 636 STDLCTRHGATLAAGEVVLALCKYDY-ALPADK----QKIVAGIVPGIEKARLYRGK------GG------EIMRSAVSR 698 (1089)
Q Consensus 636 ~~d~~~RHG~lLalaevl~~l~~~~~-~~~~~~----~~~i~~i~~~~~~~~l~r~~------~g------elir~a~~~ 698 (1089)
..+..+.+-++-....+...+..... ...+.. ...+..+++.+...-.|... .. .-.|.+++.
T Consensus 364 ~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~ 443 (971)
T 2x1g_F 364 PVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISD 443 (971)
T ss_dssp TTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHH
T ss_pred CcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHH
Confidence 23555666566555555543211100 000111 12222333333322111100 00 135677777
Q ss_pred HHHHhhhcCCCCchhhHHHHHHHHHHhcCC-----CcHHHHHHHHHHHHHHHHHhhhccCcchhhhhHHHHHHHhC--CC
Q 001381 699 FIECISLSFVSLPEKTKRSLLDTLNENLRH-----PNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLT--DP 771 (1089)
Q Consensus 699 lI~~ls~~~lp~~~~~~~~~~~~L~~~L~~-----~~~~V~~aAa~Al~~l~~~y~~~~~~~~~~~~v~~~~~~L~--s~ 771 (1089)
++..++. ..+ .+++......+...+.+ .+-..+++|.-|+..+....... .....+.+++ .+..+. +.
T Consensus 444 ~l~~~~~-~~~--~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~-~~~~l~~l~~-~l~~l~~~d~ 518 (971)
T 2x1g_F 444 TFMYCYD-VLN--DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGE-EKRQIPRLMR-VLAEIPYEKL 518 (971)
T ss_dssp HHHHHHT-TCT--THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC-------CHHHHHHH-HHHHSCTTTS
T ss_pred HHHHHHH-HHh--HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChh-hhHHHHHHHH-HHHhcCcccc
Confidence 7777663 223 34555555555555533 44456778887777764422111 1112244555 444444 34
Q ss_pred ChhhhhhHHHHhhccchHhhh--hhHHHHHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHhhhccccccccccCCcch
Q 001381 772 NPAIRRGSALALGVLPYELLA--NSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQSQENSLIHSGEDE 849 (1089)
Q Consensus 772 ~~~~r~G~a~aLG~lp~~~~~--~~~~~i~~~L~~~~~~~~~~~~~d~e~R~~al~sL~~i~~~~g~~~~~~~~~~~~~~ 849 (1089)
++..|..++.++|.+...+.. ..+..++..|+.++. ...+..|..+|..++...+.
T Consensus 519 ~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~---------~~v~~~A~~al~~l~~~~~~------------- 576 (971)
T 2x1g_F 519 NVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGLN---------SSMSAQATLGLKELCRDCQL------------- 576 (971)
T ss_dssp CHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHHH---------SSCHHHHHHHHHHHHHHCHH-------------
T ss_pred CHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhC---------hHHHHHHHHHHHHHHHHHHH-------------
Confidence 889999999999999876542 356677777776651 23588899999998865431
Q ss_pred hhhhhhhHHHHHHHHHHhcccCCCCCCCCcchHHHHHHHHHHHHHH
Q 001381 850 ISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEICT 895 (1089)
Q Consensus 850 ~~~~~~~~~~i~~~Ll~~L~DYT~D~RGDVGSwVR~aa~~~l~~l~ 895 (1089)
...++.+.+++.|...++. +++.+-+|+..++++..+.
T Consensus 577 --~l~p~~~~ll~~l~~~l~~------~~~~~~~~~~~~~ai~~i~ 614 (971)
T 2x1g_F 577 --QLKPYADPLLNACHASLNT------GRMKNSDSVRLMFSIGKLM 614 (971)
T ss_dssp --HHHHHHHHHHHHHHHHHHS------TTSCHHHHHHHHHHHHHHH
T ss_pred --hccccHHHHHHHHHHHHcC------CCCChHHHHHHHHHHHHHH
Confidence 1236678888888888863 5567889999999998775
No 58
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=97.60 E-value=0.028 Score=72.60 Aligned_cols=356 Identities=13% Similarity=0.135 Sum_probs=192.3
Q ss_pred hhhhhhhhHHHHHhhhccCccchhHHHHHHHHHHHHHHhc-----CCCchhhHHHHHHHHHHhcccCCCCCCccceeccc
Q 001381 485 SHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACY-----DREVNCRRAAAAAFQENVGRQGNYPHGIDIVNTAD 559 (1089)
Q Consensus 485 ~~VRDAacfi~WslaR~~~~~~l~~~~~~l~~~Ll~~alf-----D~e~~iRRaAsAAlQE~vGR~g~~p~GI~il~~~d 559 (1089)
=+.|.|+||++-|++.+..++...+++..++..|+ ..+. |+...+|.++.-. +||+..
T Consensus 467 W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll-~l~~~~~~~d~k~~v~~t~~~~----lGry~~------------ 529 (1023)
T 4hat_C 467 WHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLL-DLCVKKRGKDNKAVVASDIMYV----VGQYPR------------ 529 (1023)
T ss_dssp HHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHH-HHHHHCCSHHHHHHHHHHHHHH----HHTCHH------------
T ss_pred HHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHH-HhhhccccCcchHHHHHHHHHH----HHHHHH------------
Confidence 56899999999999999887777899999999765 5555 3444455444333 688732
Q ss_pred ccchhhhHHHHHHHHHHHHhhhcchHHHHHHHHhCccCCCCHHHHHHHHHHHHHHHccCchh-----------hHHHHHH
Q 001381 560 YFSLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNKICHWDKVLRELAAEALSALVKYDPEY-----------FANFILE 628 (1089)
Q Consensus 560 ~~~v~~r~~a~~~va~~va~~~~Y~~~li~~Ll~~~l~h~D~~iR~laa~aL~~L~~~~~~~-----------~~~~vlp 628 (1089)
.++..++|.+++++.|+. ++....+.+...|+.||..|+...... ....++.
T Consensus 530 ----------------wl~~~~~~L~~vl~~L~~-~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~ 592 (1023)
T 4hat_C 530 ----------------FLKAHWNFLRTVILKLFE-FMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIR 592 (1023)
T ss_dssp ----------------HHHHCHHHHHHHHHHHHH-HTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHH
T ss_pred ----------------HHhccHHHHHHHHHHHHH-HhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHH
Confidence 334567889999999987 666667889999999999999864432 2344555
Q ss_pred HhccccCCCChhhHHHHHHHHHHHHHHHhcccccCChhHHHHHHhhhHHHHhhhhcc-CcchHH-----HHHHHHHHHHH
Q 001381 629 KLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPADKQKIVAGIVPGIEKARLYR-GKGGEI-----MRSAVSRFIEC 702 (1089)
Q Consensus 629 ~Ll~~l~~~d~~~RHG~lLalaevl~~l~~~~~~~~~~~~~~i~~i~~~~~~~~l~r-~~~gel-----ir~a~~~lI~~ 702 (1089)
.+.+....-+...++.++-|++.++.+...... -+..++.+...+...++.-.-. ..++.+ -...+..++++
T Consensus 593 ~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~~--~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~ 670 (1023)
T 4hat_C 593 DIQKTTADLQPQQVHTFYKACGIIISEERSVAE--RNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKT 670 (1023)
T ss_dssp THHHHHTTSCHHHHHHHHHHHHHHHTTCCSHHH--HHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhCCCHhh--HHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHHH
Confidence 555545556778889999999999987542100 0111222222222111110000 000111 01223333332
Q ss_pred ---hhh-cCCCCchhhHHHHHHH----------HHHhcC------CCcHHHH--HHHHHHHHHHHHHhhhccCc-c-hhh
Q 001381 703 ---ISL-SFVSLPEKTKRSLLDT----------LNENLR------HPNSQIQ--NAAVKALKPFVQTYMVAADS-G-VVG 758 (1089)
Q Consensus 703 ---ls~-~~lp~~~~~~~~~~~~----------L~~~L~------~~~~~V~--~aAa~Al~~l~~~y~~~~~~-~-~~~ 758 (1089)
++. .+.+........|... +..+.. ...+.++ ..+.+..-.++..|..+.+. + ...
T Consensus 671 ~~~v~~~lg~~f~~~~~~i~~~~l~~y~~~s~~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~~~~~~~~~~~ 750 (1023)
T 4hat_C 671 NVAVCTSMGADFYPQLGHIYYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVK 750 (1023)
T ss_dssp HHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 221 1111111111222222 222111 1111111 12222223455555543321 1 123
Q ss_pred hhHHHHHHHh----CCCChhhhhhHHHHhhccchH----hhhhhHHHHHHHHhhhcc--ccCCCCCCCHHHHHHHHHHHH
Q 001381 759 GISLKYMEQL----TDPNPAIRRGSALALGVLPYE----LLANSWRDVLLKLCSCCL--IEENPEDRDTEARVNAVRGLV 828 (1089)
Q Consensus 759 ~~v~~~~~~L----~s~~~~~r~G~a~aLG~lp~~----~~~~~~~~i~~~L~~~~~--~~~~~~~~d~e~R~~al~sL~ 828 (1089)
.+++.+++.+ ....+.+|-.-.+-|++.--. ...+.+..+++.+..++. +... -...+|.|.+-.+=+.
T Consensus 751 ~~~~~l~~~vl~dY~~~~~~~r~~~vL~l~s~iv~~~~~~~~~~~~~il~~vf~~Tl~mi~~~-~~~~Pe~r~~ff~ll~ 829 (1023)
T 4hat_C 751 VLVEPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKD-FTEYPEHRVEFYKLLK 829 (1023)
T ss_dssp HTHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSC-SSSSHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhCChhhccHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcc-cccChHHHHHHHHHHH
Confidence 4445444443 234555665555555544211 123556677777776653 2222 4568999999888777
Q ss_pred HHHhhhccccccccccCCcchhhhhhhhHHHHHHHHHHhcccCCCCCCCCcchHHHHHHHHHHHHHHHHhh
Q 001381 829 SVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEICTYILC 899 (1089)
Q Consensus 829 ~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~L~DYT~D~RGDVGSwVR~aa~~~l~~l~~ll~ 899 (1089)
.+...-.... +.+..+.+..++++++-|+..= -|+++-.|++-+..++.
T Consensus 830 ~~~~~~f~~~-----------~~~~~~~~~~~~~~~~~a~~h~-----------~r~~~~~~l~~~~~ll~ 878 (1023)
T 4hat_C 830 VINEKSFAAF-----------LELPPAAFKLFVDAICWAFKHN-----------NRDVEVNGLQIALDLVK 878 (1023)
T ss_dssp HHHHHCTHHH-----------HTSCHHHHHHHHHHHHHHHTCC-----------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHChHHH-----------HcCCHHHHHHHHHHHHHHcCCC-----------chHHHHHHHHHHHHHHH
Confidence 7655421100 0111346677899999888531 17777777777766665
No 59
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=97.49 E-value=0.0021 Score=66.21 Aligned_cols=190 Identities=14% Similarity=0.136 Sum_probs=124.2
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHHHhhhCcc---h-hhhHHHHHHhhcCCCCCCcchHHHHHHHHHHHhcCCCCCCcc
Q 001381 386 IEILLSGLRDTDTVVRWSAAKGIGRITSCLTSS---L-SEEVFSSVLELFSPGEGDGSWHGGCLALAELARRGLLLPSSL 461 (1089)
Q Consensus 386 I~~ll~~L~d~dt~vR~saAK~l~rI~~~L~~~---~-a~~vi~~il~~l~~~~~~~~wHg~~LaLael~~~~ll~p~~l 461 (1089)
...|..-|.+.|..+|..|+.+|+.++..-+.. + ...+++.+++.+... ++..-..++-+|+.++...--....+
T Consensus 14 ~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i 92 (210)
T 4db6_A 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAV 92 (210)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred hHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 445666678999999999999999998542211 1 235788999998764 33445567888888875321000001
Q ss_pred --cchHHHHHHhhhhhccccccCCChhhhhhhhHHHHHhhhccCccchhHHHHHHHHHHHHHHhcCCCchhhHHHHHHHH
Q 001381 462 --PKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAAAAAFQ 539 (1089)
Q Consensus 462 --~~il~~i~~~L~f~~r~~~~svG~~VRDAacfi~WslaR~~~~~~l~~~~~~l~~~Ll~~alfD~e~~iRRaAsAAlQ 539 (1089)
..++|.+...|.-. -..||..||++++.+++... +....+++.=+...++..+-+++..+|+.|..||.
T Consensus 93 ~~~g~i~~L~~lL~~~--------~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~ 163 (210)
T 4db6_A 93 IDAGALPALVQLLSSP--------NEQILQEALWALSNIASGGN-EQIQAVIDAGALPALVQLLSSPNEQILQEALWALS 163 (210)
T ss_dssp HHTTCHHHHHHHTTCS--------CHHHHHHHHHHHHHHTTSCH-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHcCC--------cHHHHHHHHHHHHHHHcCCH-HHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 23667777666332 16799999999999987433 22233344434555667788889999999999998
Q ss_pred HHhcccCCCCCCccceecccccchhhhHHHHHHHHHHHHhhhcchHHHHHHHHhCccCCCCHHHHHHHHHHHHHHHc
Q 001381 540 ENVGRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNKICHWDKVLRELAAEALSALVK 616 (1089)
Q Consensus 540 E~vGR~g~~p~GI~il~~~d~~~v~~r~~a~~~va~~va~~~~Y~~~li~~Ll~~~l~h~D~~iR~laa~aL~~L~~ 616 (1089)
.+..... +....+.. ...++.|+. .+.+.|..+|+.|+.+|+.|+.
T Consensus 164 ~l~~~~~-------------------------~~~~~~~~-----~g~i~~L~~-ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 164 NIASGGN-------------------------EQKQAVKE-----AGALEKLEQ-LQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHTSCH-------------------------HHHHHHHH-----TTHHHHHHH-GGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHHcCCc-------------------------HHHHHHHH-----CCCHHHHHH-HHhCCCHHHHHHHHHHHHHHhc
Confidence 7743210 00011111 125555654 5668999999999999999864
No 60
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=97.45 E-value=0.21 Score=64.51 Aligned_cols=421 Identities=12% Similarity=0.082 Sum_probs=210.6
Q ss_pred CCChhHHHHHHHHHHHHHhh----hCcchhhhHHHHHHhhcCCCC--------CCcchHHHHHHHHHHHhcCCCCCCccc
Q 001381 395 DTDTVVRWSAAKGIGRITSC----LTSSLSEEVFSSVLELFSPGE--------GDGSWHGGCLALAELARRGLLLPSSLP 462 (1089)
Q Consensus 395 d~dt~vR~saAK~l~rI~~~----L~~~~a~~vi~~il~~l~~~~--------~~~~wHg~~LaLael~~~~ll~p~~l~ 462 (1089)
+.+..+|+.||..|.+.+.+ +|.+...+|=+.+++.+.... .....+..+.++++++++.. |+.-|
T Consensus 60 s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~--p~~Wp 137 (1049)
T 3m1i_C 60 STNPQSKFIALSILDKLITRKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEW--PQNWP 137 (1049)
T ss_dssp CSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHT--TTTCT
T ss_pred CCCHHHHHHHHHHHHHHHHhhCccCCHHHHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhC--cccch
Confidence 56899999999999998865 777766677777776553211 12346789999999999975 46667
Q ss_pred chHHHHHHhhhhhccccccCCChhhhhhhhHHHHHhhhccC---c------------cchhHHHHHHHHHHHHHHhcC-C
Q 001381 463 KVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYC---H------------TDMRNILEQIAPHLLTVACYD-R 526 (1089)
Q Consensus 463 ~il~~i~~~L~f~~r~~~~svG~~VRDAacfi~WslaR~~~---~------------~~l~~~~~~l~~~Ll~~alfD-~ 526 (1089)
++++-+...+. .+.+.++.+..++..+..... . +.+.+.+..++..+. ..+-+ .
T Consensus 138 ~ll~~L~~~~~---------~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~-~~l~~~~ 207 (1049)
T 3m1i_C 138 EFIPELIGSSS---------SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCF-QVLEQGS 207 (1049)
T ss_dssp THHHHHHHHHT---------TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCC
T ss_pred HHHHHHHHHHc---------cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHhcC
Confidence 78877766652 124457777777777663211 1 112333333332221 11111 2
Q ss_pred CchhhHHHHHHHHHHhcccCCCCCCccceecccccchhhhHHHHHHHHHHHHhhhcchHHHHHHHHhCccCCCCHHHHHH
Q 001381 527 EVNCRRAAAAAFQENVGRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNKICHWDKVLREL 606 (1089)
Q Consensus 527 e~~iRRaAsAAlQE~vGR~g~~p~GI~il~~~d~~~v~~r~~a~~~va~~va~~~~Y~~~li~~Ll~~~l~h~D~~iR~l 606 (1089)
...+|.++..++.-.+. .+|-+. + ....+++.+.+..+ -+.++|..
T Consensus 208 ~~~~~~~aL~~l~~~l~---wi~~~~------------------------~-----~~~~ll~~l~~~~l--~~~~~~~~ 253 (1049)
T 3m1i_C 208 SSSLIVATLESLLRYLH---WIPYRY------------------------I-----YETNILELLSTKFM--TSPDTRAI 253 (1049)
T ss_dssp CHHHHHHHHHHHHHHTT---TSCTHH------------------------H-----HSSSHHHHHHTHHH--HSHHHHHH
T ss_pred CHHHHHHHHHHHHHHHh---hCCHHH------------------------H-----hhhhHHHHHHHHhC--CCHhHHHH
Confidence 34466666666544422 111000 0 00123443332111 27889999
Q ss_pred HHHHHHHHHccC--ch--hhH-------HHHHHHh----ccc----------cCCCChhhHHHHHHHHHHHHHHHhcccc
Q 001381 607 AAEALSALVKYD--PE--YFA-------NFILEKL----TPF----------TLSTDLCTRHGATLAAGEVVLALCKYDY 661 (1089)
Q Consensus 607 aa~aL~~L~~~~--~~--~~~-------~~vlp~L----l~~----------l~~~d~~~RHG~lLalaevl~~l~~~~~ 661 (1089)
|.++|.++.... +. .+. ..++..+ ++. ....|....++.+..+.+++....+...
T Consensus 254 a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~ 333 (1049)
T 3m1i_C 254 TLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLE 333 (1049)
T ss_dssp HHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999998752 22 011 1122221 111 1122334444554444444433222111
Q ss_pred cCChhHHHHHHhhhHHHHhhhhccCcchHHHHHHHHHHHHHhhhcC--CCCc----hhhHHHHHHHHHHhcCCCc-----
Q 001381 662 ALPADKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSF--VSLP----EKTKRSLLDTLNENLRHPN----- 730 (1089)
Q Consensus 662 ~~~~~~~~~i~~i~~~~~~~~l~r~~~gelir~a~~~lI~~ls~~~--lp~~----~~~~~~~~~~L~~~L~~~~----- 730 (1089)
. ++.....+..+++.+.+-.- ...+-++..++.++..++..- .|.. ...+..+...+...+..++
T Consensus 334 ~-~~~~~~~l~~~l~~ll~~~~---~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~ 409 (1049)
T 3m1i_C 334 S-DESLRELLLNAHQYLIQLSK---IEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVV 409 (1049)
T ss_dssp S-CGGGHHHHHHHHHHHHHHHT---SSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEE
T ss_pred C-ChhhHHHHHHHHHHHHHHHc---CCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeee
Confidence 1 11122233344444432111 113345566666666655310 0111 1233333343333332211
Q ss_pred --------------H---HHHHHHHHHHHHHHHHhhhccCcchhhhhHHHHHHHhC--CCChhhhhhHHHHhhccchHhh
Q 001381 731 --------------S---QIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLT--DPNPAIRRGSALALGVLPYELL 791 (1089)
Q Consensus 731 --------------~---~V~~aAa~Al~~l~~~y~~~~~~~~~~~~v~~~~~~L~--s~~~~~r~G~a~aLG~lp~~~~ 791 (1089)
+ +.+.++.+++..+.... +.....-+.+.+-+.+. ..+-..+.++.+|+|++...+.
T Consensus 410 ~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~----~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~ 485 (1049)
T 3m1i_C 410 ENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLN----VIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMS 485 (1049)
T ss_dssp ECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSC
T ss_pred eCCCCcchHhhhccchHHHHHHHHHHHHHHHHccC----HHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccC
Confidence 1 33556777776665432 11111222222222333 2455678899999999864332
Q ss_pred h----hhHHHHHHHHhhhccccCCCCCCCHHHHH--HHHHHHHHHHhhhccccccccccCCcchhhhhhhhHHHHHHHHH
Q 001381 792 A----NSWRDVLLKLCSCCLIEENPEDRDTEARV--NAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLF 865 (1089)
Q Consensus 792 ~----~~~~~i~~~L~~~~~~~~~~~~~d~e~R~--~al~sL~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll 865 (1089)
. .....++..|..... -. ...|...++ .++..+++.+.-+.. ....+..+++.|+
T Consensus 486 ~~~e~~~l~~v~~~l~~l~~--~~-~~~~~~~~v~~~~~~~lgry~~~~~~----------------~~~~l~~vl~~ll 546 (1049)
T 3m1i_C 486 EDTEKRFVVTVIKDLLDLTV--KK-RGKDNKAVVASDIMYVVGQYPRFLKA----------------HWNFLRTVILKLF 546 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--SS-CSHHHHHHHHHHHHHHHHHCHHHHHH----------------CHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHh--hh-ccccchHHHHHHHHHHHHHHHHHHHh----------------HHHHHHHHHHHHH
Confidence 1 224556666554321 00 111233333 355666654432211 1246778889999
Q ss_pred HhcccCCCCCCCCcchHHHHHHHHHHHHHHH
Q 001381 866 KALDDYSVDNRGDVGSWVREAAVDGLEICTY 896 (1089)
Q Consensus 866 ~~L~DYT~D~RGDVGSwVR~aa~~~l~~l~~ 896 (1089)
.+|.|- -.-||.+|..++..++.
T Consensus 547 ~~l~~~--------~~~V~~~A~~al~~l~~ 569 (1049)
T 3m1i_C 547 EFMHET--------HEGVQDMACDTFIKIVQ 569 (1049)
T ss_dssp HHTTSS--------CHHHHHHHHHHHHHHHH
T ss_pred HHhcCC--------CHHHHHHHHHHHHHHHH
Confidence 998652 24599999999988763
No 61
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=97.42 E-value=0.0043 Score=65.64 Aligned_cols=217 Identities=15% Similarity=0.075 Sum_probs=136.1
Q ss_pred hhhhhhhhHHHHHhhhccCccchhHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHhcccCCCCCCccceecccccchh
Q 001381 485 SHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAAAAAFQENVGRQGNYPHGIDIVNTADYFSLS 564 (1089)
Q Consensus 485 ~~VRDAacfi~WslaR~~~~~~l~~~~~~l~~~Ll~~alfD~e~~iRRaAsAAlQE~vGR~g~~p~GI~il~~~d~~~v~ 564 (1089)
..+|-.||..+..+... +.+....+++.=+...++..+-+++..+|+.|..+|..+.....
T Consensus 26 ~~~~~~a~~~L~~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~------------------ 86 (252)
T 4db8_A 26 MQEQLSATRKFSQILSD-GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN------------------ 86 (252)
T ss_dssp SSHHHHHHHHHHHHHHH-HHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH------------------
T ss_pred HHHHHHHHHHHHHHHcC-CCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCH------------------
Confidence 45788888888665544 22233344444456667788889999999999999877642110
Q ss_pred hhHHHHHHHHHHHHhhhcchHHHHHHHHhCccCCCCHHHHHHHHHHHHHHHccCchh---hH-HHHHHHhccccCCCChh
Q 001381 565 SRVYSYLHVAVFIAQYEGYLYPFVDELLYNKICHWDKVLRELAAEALSALVKYDPEY---FA-NFILEKLTPFTLSTDLC 640 (1089)
Q Consensus 565 ~r~~a~~~va~~va~~~~Y~~~li~~Ll~~~l~h~D~~iR~laa~aL~~L~~~~~~~---~~-~~vlp~Ll~~l~~~d~~ 640 (1089)
+....+.+ ...++.|+. .+.+.|..+|+.|+.+|++|+...+.. +. ...+|.+++.+.+.+..
T Consensus 87 -------~~~~~i~~-----~g~i~~L~~-lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~ 153 (252)
T 4db8_A 87 -------EQIQAVID-----AGALPALVQ-LLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ 153 (252)
T ss_dssp -------HHHHHHHH-----TTHHHHHHH-GGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHH
T ss_pred -------HHHHHHHH-----cCCHHHHHH-HHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHH
Confidence 00011111 124555554 566789999999999999999766543 22 24788899889888999
Q ss_pred hHHHHHHHHHHHHHHHhcccccCChhHHHHH--HhhhHHHHhhhhccCcchHHHHHHHHHHHHHhhhcCCCCchhhH-HH
Q 001381 641 TRHGATLAAGEVVLALCKYDYALPADKQKIV--AGIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLPEKTK-RS 717 (1089)
Q Consensus 641 ~RHG~lLalaevl~~l~~~~~~~~~~~~~~i--~~i~~~~~~~~l~r~~~gelir~a~~~lI~~ls~~~lp~~~~~~-~~ 717 (1089)
+|..++.+++.+... +++....+ .+.++.+.+ +.+. +.+-++..++..+..++...-.....+. ..
T Consensus 154 v~~~a~~~L~~l~~~--------~~~~~~~~~~~~~i~~L~~--ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g 222 (252)
T 4db8_A 154 ILQEALWALSNIASG--------GNEQIQAVIDAGALPALVQ--LLSS-PNEQILQEALWALSNIASGGNEQKQAVKEAG 222 (252)
T ss_dssp HHHHHHHHHHHHTTS--------CHHHHHHHHHTTCHHHHHH--GGGC-SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcC--------ChHHHHHHHHCCCHHHHHH--HHCC-CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCC
Confidence 999999888887632 11111111 122333331 1222 2456788888888887742211001111 22
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 001381 718 LLDTLNENLRHPNSQIQNAAVKALKPF 744 (1089)
Q Consensus 718 ~~~~L~~~L~~~~~~V~~aAa~Al~~l 744 (1089)
....|...+.+.++.++..|+.++..+
T Consensus 223 ~i~~L~~ll~~~~~~v~~~A~~~L~~l 249 (252)
T 4db8_A 223 ALEKLEQLQSHENEKIQKEAQEALEKL 249 (252)
T ss_dssp HHHHHHTTTTCSSSHHHHTHHHHHHTT
T ss_pred cHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 455677778899999999999988755
No 62
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=97.33 E-value=0.034 Score=71.94 Aligned_cols=138 Identities=16% Similarity=0.149 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHHccCchhhHHHHHHHhccccC--CCChhhHHHHHHHHHHHHHHHhcccccCChhHHHH-HHhhhHHH
Q 001381 602 VLRELAAEALSALVKYDPEYFANFILEKLTPFTL--STDLCTRHGATLAAGEVVLALCKYDYALPADKQKI-VAGIVPGI 678 (1089)
Q Consensus 602 ~iR~laa~aL~~L~~~~~~~~~~~vlp~Ll~~l~--~~d~~~RHG~lLalaevl~~l~~~~~~~~~~~~~~-i~~i~~~~ 678 (1089)
+.|+.++.+|..++...+..+...+++.+-+.+. ..+|..|++++.+++.+...+. +..... +..+++.+
T Consensus 428 ~~~~~~~~~L~~l~~~~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~-------~~~e~~~l~~v~~~l 500 (1049)
T 3m1i_C 428 QLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMS-------EDTEKRFVVTVIKDL 500 (1049)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSC-------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccC-------chhhHHHHHHHHHHH
Confidence 4577888899999988887777777776655553 4689999999999997754322 111111 33334333
Q ss_pred Hhhhhc-cCc-chHHHHHHHHHHHHHhhhcCCCCchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Q 001381 679 EKARLY-RGK-GGEIMRSAVSRFIECISLSFVSLPEKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQT 747 (1089)
Q Consensus 679 ~~~~l~-r~~-~gelir~a~~~lI~~ls~~~lp~~~~~~~~~~~~L~~~L~~~~~~V~~aAa~Al~~l~~~ 747 (1089)
..-... ++. ...+++..+|..++..+.- +.-+.+.+...+..+-.++.+++..|+.+|+.|+..++..
T Consensus 501 ~~l~~~~~~~~~~~~v~~~~~~~lgry~~~-~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~ 570 (1049)
T 3m1i_C 501 LDLTVKKRGKDNKAVVASDIMYVVGQYPRF-LKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQK 570 (1049)
T ss_dssp HHHTTSSCSHHHHHHHHHHHHHHHHHCHHH-HHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhccccchHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 321111 111 2345665688888876531 1112345556666666788888999999999999988774
No 63
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=97.27 E-value=0.0023 Score=65.77 Aligned_cols=181 Identities=18% Similarity=0.107 Sum_probs=115.5
Q ss_pred ccCCCCHHHHHHHHHHHHHHHccCchhhH----HHHHHHhccccCCCChhhHHHHHHHHHHHHHHHhcccccCChhHHHH
Q 001381 595 KICHWDKVLRELAAEALSALVKYDPEYFA----NFILEKLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPADKQKI 670 (1089)
Q Consensus 595 ~l~h~D~~iR~laa~aL~~L~~~~~~~~~----~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~l~~~~~~~~~~~~~~ 670 (1089)
.+.+.|..+|..|+.+|+.++..+++... ...+|.+++.+.+.+..+|..++.+++.+... .++....
T Consensus 20 LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~--------~~~~~~~ 91 (210)
T 4db6_A 20 QLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG--------GNEQIQA 91 (210)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS--------CHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcC--------CcHHHHH
Confidence 45689999999999999999977665432 24688899889888999999999998887531 1111111
Q ss_pred HH--hhhHHHHhhhhccCcchHHHHHHHHHHHHHhhhcCCCCchhh-HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Q 001381 671 VA--GIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLPEKT-KRSLLDTLNENLRHPNSQIQNAAVKALKPFVQT 747 (1089)
Q Consensus 671 i~--~i~~~~~~~~l~r~~~gelir~a~~~lI~~ls~~~lp~~~~~-~~~~~~~L~~~L~~~~~~V~~aAa~Al~~l~~~ 747 (1089)
+. +.++.+.+ +.+. +..-++..+|..+.+++...-.....+ .......|-..|.+++..++..|+.++..+...
T Consensus 92 i~~~g~i~~L~~--lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 168 (210)
T 4db6_A 92 VIDAGALPALVQ--LLSS-PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 168 (210)
T ss_dssp HHHTTCHHHHHH--HTTC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred HHHCCCHHHHHH--HHcC-CcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 11 12222221 1121 235677888888888874221100111 123455666777889999999999999887642
Q ss_pred hhhccCcchhhhhHHHHHHHhCCCChhhhhhHHHHhhcc
Q 001381 748 YMVAADSGVVGGISLKYMEQLTDPNPAIRRGSALALGVL 786 (1089)
Q Consensus 748 y~~~~~~~~~~~~v~~~~~~L~s~~~~~r~G~a~aLG~l 786 (1089)
.-.....-.....++.+.+.+++.++..++.++.+|+.+
T Consensus 169 ~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l 207 (210)
T 4db6_A 169 GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 207 (210)
T ss_dssp CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 000000001145678888888888888888888877654
No 64
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.24 E-value=0.0046 Score=72.73 Aligned_cols=224 Identities=15% Similarity=0.126 Sum_probs=119.9
Q ss_pred HHHHHHhcCCCchhhHHHHHHHHHHhcccCCCCCCccceecccccchhhhHHHHHHHHHHHH--hhhcchHHHHHHHHhC
Q 001381 517 HLLTVACYDREVNCRRAAAAAFQENVGRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIA--QYEGYLYPFVDELLYN 594 (1089)
Q Consensus 517 ~Ll~~alfD~e~~iRRaAsAAlQE~vGR~g~~p~GI~il~~~d~~~v~~r~~a~~~va~~va--~~~~Y~~~li~~Ll~~ 594 (1089)
..++.-+||+.|.+|.+|.-||-|++-.||.- -|.. ... |+ .....+-..++ +|..|..
T Consensus 177 E~L~~DLFdp~WEiRHGAALGLREILR~hG~G-AGR~--~~~------N~-DLAvRLLCVLALDRFGDYVS--------- 237 (800)
T 3oc3_A 177 EQISDNLLSYEWYKRHGAFLAFAAMFSEIDNG-GDIQ--IRV------DS-KLFSKIYEILVTDKFNDFVD--------- 237 (800)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHHHCC-----CC--CCC------CT-THHHHHHHHHHHBCCBBCSS---------
T ss_pred HHHHHHhcCcchhhhhHHHHHHHHHHHHhccC-Ccee--ccc------cH-HHHHHHHHHHHhcccccccc---------
Confidence 35789999999999999999999999888641 1221 000 11 11111111111 3322211
Q ss_pred ccCCCCHHHHHHHHHHHHHHHccCchhhHHHHHHHhccccCCCChhhHHHHHHHHHHHHHHHhcccccCChhHHHHHHhh
Q 001381 595 KICHWDKVLRELAAEALSALVKYDPEYFANFILEKLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPADKQKIVAGI 674 (1089)
Q Consensus 595 ~l~h~D~~iR~laa~aL~~L~~~~~~~~~~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~l~~~~~~~~~~~~~~i~~i 674 (1089)
..-=.-||+.+|++||.+ ...|.. -.++-+++..+....|++|||+++++.-+ .+... + +..+
T Consensus 238 --DqVVAPVRETaAQtLGaL-~hLp~e--~~IL~qLV~~l~~~~WEVRHGGLLGLKYL----~DLL~----~----Ld~V 300 (800)
T 3oc3_A 238 --DRTVAPVRDAAAYLLSRI-YPLIGP--NDIIEQLVGFLDSGDWQVQFSGLIALGYL----KEFVE----D----KDGL 300 (800)
T ss_dssp --SSCBCHHHHHHHHHHHHH-TTTSCS--CCHHHHHTTGGGCSCHHHHHHHHHHHHHT----GGGCC----C----HHHH
T ss_pred --CeeeeehHHHHHHHHHHH-HhCChh--HHHHHHHHhhcCCCCeeehhhhHHHHHHH----HHHHH----H----HHHH
Confidence 123357999999999999 665554 34677777777889999999999999876 11111 1 2223
Q ss_pred hHHHHhhhhccCcchHHHHHHHHHHHHHhhhcCCCCchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCc
Q 001381 675 VPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLPEKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADS 754 (1089)
Q Consensus 675 ~~~~~~~~l~r~~~gelir~a~~~lI~~ls~~~lp~~~~~~~~~~~~L~~~L~~~~~~V~~aAa~Al~~l~~~y~~~~~~ 754 (1089)
++.+.. .+ +..-.++..-|+..|+. ++ .| +.++.+..++=++|.+- +++-.+....+. |....++....
T Consensus 301 v~aVL~-GL-~D~DDDVRAVAAetLiP-IA---~p---~~l~~LL~iLWd~L~~L-DDLSASTgSVMd-LLAkL~s~p~~ 369 (800)
T 3oc3_A 301 CRKLVS-LL-SSPDEDIKLLSAELLCH-FP---IT---DSLDLVLEKCWKNIESE-ELISVSKTSNLS-LLTKIYRENPE 369 (800)
T ss_dssp HHHHHH-HT-TCSSHHHHHHHHHHHTT-SC---CS---STHHHHHHHHHHHHHTC-CSCCTTHHHHHH-HHHHHHHHCTT
T ss_pred HHHHHh-hc-CCcccHHHHHHHHHhhh-hc---ch---hhHHHHHHHHHHHhhhh-cccchhhHHHHH-HHHHHHcCCcc
Confidence 333321 11 11223333334444442 22 12 23444555555555443 222222222222 22222221111
Q ss_pred -chhhhhHHHHHHHhCCCChhhhhhHHHHhhccc
Q 001381 755 -GVVGGISLKYMEQLTDPNPAIRRGSALALGVLP 787 (1089)
Q Consensus 755 -~~~~~~v~~~~~~L~s~~~~~r~G~a~aLG~lp 787 (1089)
.....+++++..-++..-..+|++...+|-.+-
T Consensus 370 a~~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL 403 (800)
T 3oc3_A 370 LSIPPERLKDIFPCFTSPVPEVRTSILNMVKNLS 403 (800)
T ss_dssp CCCCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC
T ss_pred cccChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Confidence 111466666666677778888998888887664
No 65
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=97.07 E-value=0.02 Score=67.16 Aligned_cols=344 Identities=12% Similarity=0.048 Sum_probs=175.0
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhCcchhh-----hHHHHHHhhcCCCCCCcchHHHHHHHHHHHhcCCCC
Q 001381 383 EEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSLSE-----EVFSSVLELFSPGEGDGSWHGGCLALAELARRGLLL 457 (1089)
Q Consensus 383 E~iI~~ll~~L~d~dt~vR~saAK~l~rI~~~L~~~~a~-----~vi~~il~~l~~~~~~~~wHg~~LaLael~~~~ll~ 457 (1089)
...|+.|+..|.+.+..+++.|+.+|..|+.. .++... -.|+.+++++....++..-.-++-+|+.++..-
T Consensus 43 ~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~-~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~--- 118 (457)
T 1xm9_A 43 LGGICKLVDLLRSPNQNVQQAAAGALRNLVFR-STTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTD--- 118 (457)
T ss_dssp TTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSS-CHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSS---
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCH---
Confidence 35688888899999999999999999999974 123222 357888898873333333344677888888651
Q ss_pred CCc---ccchHHHHHHhhhhh--ccccccC------CChhhhhhhhHHHHHhhhccCccchhHHHH--HHHHHH---HHH
Q 001381 458 PSS---LPKVVPVIVKALHYD--IRRGSHS------VGSHVRDAAAYVCWAFGRAYCHTDMRNILE--QIAPHL---LTV 521 (1089)
Q Consensus 458 p~~---l~~il~~i~~~L~f~--~r~~~~s------vG~~VRDAacfi~WslaR~~~~~~l~~~~~--~l~~~L---l~~ 521 (1089)
..+ +...+|.+.+-|... .+..+.+ .-..|...|+.++|.+++. ++.-..+.+ .+...| +..
T Consensus 119 ~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~--~~~~~~i~~~~g~i~~Lv~lL~~ 196 (457)
T 1xm9_A 119 ELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA--DAGRQTMRNYSGLIDSLMAYVQN 196 (457)
T ss_dssp STHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTS--HHHHHHHTTSTTHHHHHHHHHHH
T ss_pred HhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccC--HHHHHHHHHcCCCHHHHHHHHHh
Confidence 211 235677777766321 0000000 1133445888999999986 321111221 122222 222
Q ss_pred Hh--cCCCchhhHHHHHHHHHHhccc-CCCCCCccceecc-c-ccchhhhHHHHHHHHHH-------HH---------hh
Q 001381 522 AC--YDREVNCRRAAAAAFQENVGRQ-GNYPHGIDIVNTA-D-YFSLSSRVYSYLHVAVF-------IA---------QY 580 (1089)
Q Consensus 522 al--fD~e~~iRRaAsAAlQE~vGR~-g~~p~GI~il~~~-d-~~~v~~r~~a~~~va~~-------va---------~~ 580 (1089)
+. .+++..+...|..++-.+..|. +..|+|.+.++.. + -+....-..+|...... .. +.
T Consensus 197 ~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (457)
T 1xm9_A 197 CVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGS 276 (457)
T ss_dssp HHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGG
T ss_pred hccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHH
Confidence 11 1244445656666665554332 2233332211100 0 00000000011100000 00 01
Q ss_pred h-cchHHHHHHHHhCccC-CCCHHHHHHHHHHHHHHHccCch---hh----H--HHHHHHhccccCCCChhhHHHHHHHH
Q 001381 581 E-GYLYPFVDELLYNKIC-HWDKVLRELAAEALSALVKYDPE---YF----A--NFILEKLTPFTLSTDLCTRHGATLAA 649 (1089)
Q Consensus 581 ~-~Y~~~li~~Ll~~~l~-h~D~~iR~laa~aL~~L~~~~~~---~~----~--~~vlp~Ll~~l~~~d~~~RHG~lLal 649 (1089)
. -+....++.|+. .+. ..+..+++-|+.||++|+..+.. .+ . ...+|.|.+.+.+.+..++.-++.++
T Consensus 277 ~~l~~~~~l~~L~~-lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL 355 (457)
T 1xm9_A 277 GWLYHSDAIRTYLN-LMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLL 355 (457)
T ss_dssp GGGGSHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHhCcchHHHHHH-HHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHH
Confidence 1 112234444443 222 45789999999999999975432 22 1 24678888899999999999999888
Q ss_pred HHHHHHHhcccccCChhHHHHH-HhhhHHHHhhhhccCc-----chHHHHHHHHHHHHHhhhcCCCCchhhH-HHHHHHH
Q 001381 650 GEVVLALCKYDYALPADKQKIV-AGIVPGIEKARLYRGK-----GGEIMRSAVSRFIECISLSFVSLPEKTK-RSLLDTL 722 (1089)
Q Consensus 650 aevl~~l~~~~~~~~~~~~~~i-~~i~~~~~~~~l~r~~-----~gelir~a~~~lI~~ls~~~lp~~~~~~-~~~~~~L 722 (1089)
+.+... ++....| ...++.+.+ +.++. ..+-+..++|..+..+....-+....+. ..-++.|
T Consensus 356 ~nls~~---------~~~~~~i~~~~i~~Lv~--lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L 424 (457)
T 1xm9_A 356 SNMSRH---------PLLHRVMGNQVFPEVTR--LLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNI 424 (457)
T ss_dssp HHHHTS---------GGGHHHHHHHTHHHHHH--TTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHH
T ss_pred HHHhcC---------HHHHHHHHHhhhHHHHH--hccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHH
Confidence 887531 1111111 122232221 11221 1234556777777766532211100110 1233334
Q ss_pred HHhcCCC-cHHHHHHHHHHHHHH
Q 001381 723 NENLRHP-NSQIQNAAVKALKPF 744 (1089)
Q Consensus 723 ~~~L~~~-~~~V~~aAa~Al~~l 744 (1089)
...+.+. ++.|+..|+..+..+
T Consensus 425 ~~L~~~~~~~~i~~~A~~~L~~~ 447 (457)
T 1xm9_A 425 INLCRSSASPKAAEAARLLLSDM 447 (457)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHcCCCcHHHHHHHHHHHHHH
Confidence 4555677 888988887776543
No 66
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.06 E-value=0.036 Score=56.84 Aligned_cols=189 Identities=18% Similarity=0.145 Sum_probs=130.7
Q ss_pred cccchhhhHHHHHHHHHHHHhhhcchHHHHHHHHhCccC-CCCHHHHHHHHHHHHHHHccCchhhHHHHHHHhccccCCC
Q 001381 559 DYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNKIC-HWDKVLRELAAEALSALVKYDPEYFANFILEKLTPFTLST 637 (1089)
Q Consensus 559 d~~~v~~r~~a~~~va~~va~~~~Y~~~li~~Ll~~~l~-h~D~~iR~laa~aL~~L~~~~~~~~~~~vlp~Ll~~l~~~ 637 (1089)
|--.+..++||...+......+++..+++++.|+- .+. +.-...-+--|+++|.++...|+-+. .++|.+.....-.
T Consensus 42 DDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~v-m~~ksEaIpltqeIa~a~G~la~i~Pe~v~-~vVp~lfanyrig 119 (253)
T 2db0_A 42 DDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFS-LLKKSEAIPLTQEIAKAFGQMAKEKPELVK-SMIPVLFANYRIG 119 (253)
T ss_dssp TCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHH-HHHHCCSHHHHHHHHHHHHHHHHHCHHHHH-HHHHHHHHHSCCC
T ss_pred ccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHH-HHhhcccCchHHHHHHHHhHHHHhCHHHHH-hhHHHHHHHHhcC
Confidence 34445567888777777777889999999998874 222 55556667788999999999998554 5789999988888
Q ss_pred ChhhHHHHHHHHHHHHHHHhcccccCChhHHHHHHhhhHHHHhhhhccCcchHHHHHHHHHHHHHhhhcCCCCchhhHHH
Q 001381 638 DLCTRHGATLAAGEVVLALCKYDYALPADKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLPEKTKRS 717 (1089)
Q Consensus 638 d~~~RHG~lLalaevl~~l~~~~~~~~~~~~~~i~~i~~~~~~~~l~r~~~gelir~a~~~lI~~ls~~~lp~~~~~~~~ 717 (1089)
|.-+|-|.-.++.+++.+.+. .. ..++..+.. +.. ...+.=+.++.+||+.+..+++ +.+.-
T Consensus 120 d~kikIn~~yaLeeIaranP~--------l~---~~v~rdi~s--mlt-skd~~Dkl~aLnFi~alGen~~----~yv~P 181 (253)
T 2db0_A 120 DEKTKINVSYALEEIAKANPM--------LM---ASIVRDFMS--MLS-SKNREDKLTALNFIEAMGENSF----KYVNP 181 (253)
T ss_dssp SHHHHHHHHHHHHHHHHHCHH--------HH---HHHHHHHHH--HTS-CSSHHHHHHHHHHHHTCCTTTH----HHHGG
T ss_pred CccceecHHHHHHHHHHhChH--------HH---HHHHHHHHH--Hhc-CCChHHHHHHHHHHHHHhccCc----cccCc
Confidence 999999999999999987542 21 222222221 011 1135567789999998876542 33333
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCcchhhhhHHHHHHHhCCCCh
Q 001381 718 LLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLTDPNP 773 (1089)
Q Consensus 718 ~~~~L~~~L~~~~~~V~~aAa~Al~~l~~~y~~~~~~~~~~~~v~~~~~~L~s~~~ 773 (1089)
++.-|...|.+.++-||.+|++++..+-.. ......++..-++.+.+.+.
T Consensus 182 fLprL~aLL~D~deiVRaSaVEtL~~lA~~------npklRkii~~kl~e~~D~S~ 231 (253)
T 2db0_A 182 FLPRIINLLHDGDEIVRASAVEALVHLATL------NDKLRKVVIKRLEELNDTSS 231 (253)
T ss_dssp GHHHHHGGGGCSSHHHHHHHHHHHHHHHTS------CHHHHHHHHHHHHHCCCSCH
T ss_pred chHHHHHHHcCcchhhhHHHHHHHHHHHHc------CHHHHHHHHHHHHHhcCcHH
Confidence 445566777899999999999999887542 12234555555566655443
No 67
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=96.98 E-value=0.0011 Score=77.85 Aligned_cols=153 Identities=18% Similarity=0.186 Sum_probs=97.6
Q ss_pred HHHHhccccCCCChhhHHHHHHHHHHHHHHHhcccccCChhHHHHHHhhhHHHHhhhhccCcchHHHHHHHHHHHHHhhh
Q 001381 626 ILEKLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPADKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISL 705 (1089)
Q Consensus 626 vlp~Ll~~l~~~d~~~RHG~lLalaevl~~l~~~~~~~~~~~~~~i~~i~~~~~~~~l~r~~~gelir~a~~~lI~~ls~ 705 (1089)
+...|+..+-+..|++|||+.+||.|++..-..-+.. . .. ... ..+|+++-.++.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR-~----------------~~--~N~------DLAvRLLCVLAL 229 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDI-Q----------------IR--VDS------KLFSKIYEILVT 229 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----C-C----------------CC--CCT------THHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCce-e----------------cc--ccH------HHHHHHHHHHHh
Confidence 5667778888999999999999999999753210000 0 00 000 445666655554
Q ss_pred cCCCCchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCcchhhhhHHHHHHHhCCCChhhhhhHHHHhhc
Q 001381 706 SFVSLPEKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLTDPNPAIRRGSALALGV 785 (1089)
Q Consensus 706 ~~lp~~~~~~~~~~~~L~~~L~~~~~~V~~aAa~Al~~l~~~y~~~~~~~~~~~~v~~~~~~L~s~~~~~r~G~a~aLG~ 785 (1089)
..+ -+.+. ..-...||+.+++++..+ .++... -+++..++..+....=.+|.|.-++|-.
T Consensus 230 DRF----------GDYVS---DqVVAPVRETaAQtLGaL--~hLp~e-----~~IL~qLV~~l~~~~WEVRHGGLLGLKY 289 (800)
T 3oc3_A 230 DKF----------NDFVD---DRTVAPVRDAAAYLLSRI--YPLIGP-----NDIIEQLVGFLDSGDWQVQFSGLIALGY 289 (800)
T ss_dssp BCC----------BBCSS---SSCBCHHHHHHHHHHHHH--TTTSCS-----CCHHHHHTTGGGCSCHHHHHHHHHHHHH
T ss_pred ccc----------ccccc---CeeeeehHHHHHHHHHHH--HhCChh-----HHHHHHHHhhcCCCCeeehhhhHHHHHH
Confidence 332 11111 134456899999999987 444321 3566666666666667789999999888
Q ss_pred cchHhhhhhHHHHHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHH
Q 001381 786 LPYELLANSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVC 831 (1089)
Q Consensus 786 lp~~~~~~~~~~i~~~L~~~~~~~~~~~~~d~e~R~~al~sL~~i~ 831 (1089)
+ ..++.. ++.+++.++.+. .+.|-+.|..|..+|..+.
T Consensus 290 L-~DLL~~-Ld~Vv~aVL~GL------~D~DDDVRAVAAetLiPIA 327 (800)
T 3oc3_A 290 L-KEFVED-KDGLCRKLVSLL------SSPDEDIKLLSAELLCHFP 327 (800)
T ss_dssp T-GGGCCC-HHHHHHHHHHHT------TCSSHHHHHHHHHHHTTSC
T ss_pred H-HHHHHH-HHHHHHHHHhhc------CCcccHHHHHHHHHhhhhc
Confidence 8 222222 667777776665 3456799999999887754
No 68
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=96.98 E-value=0.59 Score=56.53 Aligned_cols=364 Identities=15% Similarity=0.060 Sum_probs=196.6
Q ss_pred HHHHhcCCCchhhHHHHHHHHHHhcccCCCCCCccceecccccchhhhHHHHHHHHHHHHhhhcchHHHHHHHHhCccCC
Q 001381 519 LTVACYDREVNCRRAAAAAFQENVGRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNKICH 598 (1089)
Q Consensus 519 l~~alfD~e~~iRRaAsAAlQE~vGR~g~~p~GI~il~~~d~~~v~~r~~a~~~va~~va~~~~Y~~~li~~Ll~~~l~h 598 (1089)
++..+-..+..++..|..+++-+.-.. .+....|.+. ..|+.|+. .|.+
T Consensus 53 LV~~L~s~~~~~q~~Aa~~L~~La~~~-------------------------~~~k~~V~~~-----G~Ip~LV~-LL~s 101 (584)
T 3l6x_A 53 VIAMLGFRLDAVKSNAAAYLQHLCYRN-------------------------DKVKTDVRKL-----KGIPVLVG-LLDH 101 (584)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHTTC-------------------------HHHHHHHHHT-----THHHHHHH-GGGC
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHcCC-------------------------hHHHHHHHHc-----CCcHHHHH-HHCC
Confidence 345556677888888888887763211 0111122222 24556665 6778
Q ss_pred CCHHHHHHHHHHHHHHHcc-Cchh---hH-HHHHHHhccccCC-CChhhHHHHHHHHHHHHHHHhcccccCChhHHH-HH
Q 001381 599 WDKVLRELAAEALSALVKY-DPEY---FA-NFILEKLTPFTLS-TDLCTRHGATLAAGEVVLALCKYDYALPADKQK-IV 671 (1089)
Q Consensus 599 ~D~~iR~laa~aL~~L~~~-~~~~---~~-~~vlp~Ll~~l~~-~d~~~RHG~lLalaevl~~l~~~~~~~~~~~~~-~i 671 (1089)
.+..+++.|+.||++|+.. +++. +. .-.+|.|++.+.+ .+...+.-+..+|..+.. .. .......+ .+
T Consensus 102 ~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~----~~-~~k~~I~~~al 176 (584)
T 3l6x_A 102 PKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS----HD-SIKMEIVDHAL 176 (584)
T ss_dssp SSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT----SG-GGHHHHHHHTH
T ss_pred CCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC----Cc-hhhHHHHhccH
Confidence 9999999999999999975 3432 11 2357778777765 455555544444444321 10 00001111 11
Q ss_pred HhhhHHHHh--hhh---------ccCcchHHHHHHHHHHHHHhhhcCCCCch------hhHHHHHHHHHHhc--CCCcHH
Q 001381 672 AGIVPGIEK--ARL---------YRGKGGEIMRSAVSRFIECISLSFVSLPE------KTKRSLLDTLNENL--RHPNSQ 732 (1089)
Q Consensus 672 ~~i~~~~~~--~~l---------~r~~~gelir~a~~~lI~~ls~~~lp~~~------~~~~~~~~~L~~~L--~~~~~~ 732 (1089)
..++..+.. ... .+...-+-+++-++..+.+++...-.... -.++.+..++..++ ..++..
T Consensus 177 p~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~ 256 (584)
T 3l6x_A 177 HALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSK 256 (584)
T ss_dssp HHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCH
T ss_pred HHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHH
Confidence 112221110 000 01111235666677777777743210011 12344555555542 445667
Q ss_pred HHHHHHHHHHHHHHHhhhc--------------------cCcchh-----hhhHHHHHHHhC-CCChhhhhhHHHHhhcc
Q 001381 733 IQNAAVKALKPFVQTYMVA--------------------ADSGVV-----GGISLKYMEQLT-DPNPAIRRGSALALGVL 786 (1089)
Q Consensus 733 V~~aAa~Al~~l~~~y~~~--------------------~~~~~~-----~~~v~~~~~~L~-s~~~~~r~G~a~aLG~l 786 (1089)
+++.|+-++..|+-..... ...... ...++.|+..|+ +.++..+..++-||..+
T Consensus 257 ~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL 336 (584)
T 3l6x_A 257 LVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNL 336 (584)
T ss_dssp HHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHH
Confidence 7888888887765321000 001111 355778888885 67888888888888777
Q ss_pred chH------hhhhhH--HHHHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHhhhccccccccccCCcchhhhhhhhHH
Q 001381 787 PYE------LLANSW--RDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKN 858 (1089)
Q Consensus 787 p~~------~~~~~~--~~i~~~L~~~~~~~~~~~~~d~e~R~~al~sL~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 858 (1089)
-.. ..+..+ ...+..|+..+. ..+.+.+.+|+.+|..++..... ...+-.
T Consensus 337 ~ag~~~~~~~~~~~v~~~~glp~Lv~LL~------s~~~~v~~~A~~aL~nLs~~~~~----------------~~~I~~ 394 (584)
T 3l6x_A 337 CAGRWTYGRYIRSALRQEKALSAIADLLT------NEHERVVKAASGALRNLAVDARN----------------KELIGK 394 (584)
T ss_dssp HSSCSHHHHHHHHHHTSHHHHHHHHHGGG------CSCHHHHHHHHHHHHHHHTTCSC----------------HHHHHH
T ss_pred HcCCccccHHHHHHHHHcCcHHHHHHHHc------CCCHHHHHHHHHHHHHHhCChhH----------------HHHHHh
Confidence 321 111111 244666766653 34679999999999998652211 112345
Q ss_pred HHHHHHHHhcccCCCCCCCCcchHHHHHHHHHHHHHHHHhhccCCCCCCCCCccccccCCCCccccccccCHHHHHHHHH
Q 001381 859 EVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEICTYILCKRDFVPSPEKPQEVKSELPGNVTAEKTLFDANLATNLVA 938 (1089)
Q Consensus 859 ~i~~~Ll~~L~DYT~D~RGDVGSwVR~aa~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 938 (1089)
..+..|+..|..-..+....+-.-++.+|+.+|..++ +.. ......+.+ ...+.
T Consensus 395 g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~---a~~-------------------~~~~~~I~~----~g~I~ 448 (584)
T 3l6x_A 395 HAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVI---AEN-------------------LEAAKKLRE----TQGIE 448 (584)
T ss_dssp HHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHH---TTC-------------------HHHHHHHHH----TTHHH
T ss_pred CCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHh---cCC-------------------HHHHHHHHH----CCChH
Confidence 6788888888553211111223457788888887664 200 011111111 12344
Q ss_pred HHHHHhhhh--hHHHHHHHHHHHHHHhhcc
Q 001381 939 GIVKQAVEK--MDKLREAAAKVLRRILYNK 966 (1089)
Q Consensus 939 ~llrq~~Ek--iD~vR~~A~~~L~~l~~~~ 966 (1089)
.|+++.--+ -++++..|..+|+.++.+.
T Consensus 449 ~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~ 478 (584)
T 3l6x_A 449 KLVLINKSGNRSEKEVRAAALVLQTIWGYK 478 (584)
T ss_dssp HHHHHHTCSSSCHHHHHHHHHHHHHHHTSH
T ss_pred HHHHHHhCCCCChHHHHHHHHHHHHHHcCH
Confidence 555555443 7899999999999998764
No 69
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=96.97 E-value=0.17 Score=59.08 Aligned_cols=354 Identities=11% Similarity=0.051 Sum_probs=188.4
Q ss_pred HHHhcCCCchhhHHHHHHHHHHhcccCCCCCCccceecccccchhhhHHHHHHHHHHHHhhhcchHHHHHHHHhCccCCC
Q 001381 520 TVACYDREVNCRRAAAAAFQENVGRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNKICHW 599 (1089)
Q Consensus 520 ~~alfD~e~~iRRaAsAAlQE~vGR~g~~p~GI~il~~~d~~~v~~r~~a~~~va~~va~~~~Y~~~li~~Ll~~~l~h~ 599 (1089)
+..+-.++..+|..|..+|+.+..+.... ...+.+. ..++.|+. .+.+.
T Consensus 8 v~~L~s~~~~~q~~A~~~L~~l~~~~~~~-------------------------~~~i~~~-----g~i~~Lv~-lL~s~ 56 (457)
T 1xm9_A 8 VQYLSSQDEKYQAIGAYYIQHTCFQDESA-------------------------KQQVYQL-----GGICKLVD-LLRSP 56 (457)
T ss_dssp HHHHHSSCTHHHHHHHHHHHHHTSSCSSH-------------------------HHHHHHT-----THHHHHHH-HTTSS
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHcCChHH-------------------------HHHHHHc-----CCHHHHHH-HHcCC
Confidence 44555667889999999998875322110 0011111 24556665 56688
Q ss_pred CHHHHHHHHHHHHHHHccCchhhH----HHHHHHhccccC-CCChhhHHHHHHHHHHHHHHHhcccccCChhHHHHHHhh
Q 001381 600 DKVLRELAAEALSALVKYDPEYFA----NFILEKLTPFTL-STDLCTRHGATLAAGEVVLALCKYDYALPADKQKIVAGI 674 (1089)
Q Consensus 600 D~~iR~laa~aL~~L~~~~~~~~~----~~vlp~Ll~~l~-~~d~~~RHG~lLalaevl~~l~~~~~~~~~~~~~~i~~i 674 (1089)
|..+++.|+.+|.+|+..+++.-. .-.+|.|++.+. +.+...+.-++.+|..+... . .....+-+ +.
T Consensus 57 ~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~-----~~~~~i~~--g~ 128 (457)
T 1xm9_A 57 NQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-D-----ELKEELIA--DA 128 (457)
T ss_dssp CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-S-----STHHHHHH--HH
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-H-----HhHHHHHh--cc
Confidence 999999999999999986554221 234788888887 77888888777777776532 1 11111111 22
Q ss_pred hHHHHhhhhc-------cC--------cchHHHHHHHHHHHHHhhhcCCCCch-------hhHHHHHHHHHHhc--CCCc
Q 001381 675 VPGIEKARLY-------RG--------KGGEIMRSAVSRFIECISLSFVSLPE-------KTKRSLLDTLNENL--RHPN 730 (1089)
Q Consensus 675 ~~~~~~~~l~-------r~--------~~gelir~a~~~lI~~ls~~~lp~~~-------~~~~~~~~~L~~~L--~~~~ 730 (1089)
++.+.+- +. ++ ...++.+ .++..+.+++.. |-.. ..++.+...+..+. ..++
T Consensus 129 i~~Lv~l-l~~~~s~~~~~~~~~~~e~~~~~v~~-~a~~aL~nLs~~--~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~ 204 (457)
T 1xm9_A 129 LPVLADR-VIIPFSGWCDGNSNMSREVVDPEVFF-NATGCLRNLSSA--DAGRQTMRNYSGLIDSLMAYVQNCVAASRCD 204 (457)
T ss_dssp HHHHHHH-TTHHHHTCC---------CCCHHHHH-HHHHHHHHHTTS--HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHH-HhccccccccCccchhcccccHHHHH-HHHHHHHHHccC--HHHHHHHHHcCCCHHHHHHHHHhhccccCCc
Confidence 2222210 10 00 0122333 445555566642 2111 12333444444321 1234
Q ss_pred HHHHHHHHHHHHHHHHHh---------------------------hhc------------------cCcch-----hhhh
Q 001381 731 SQIQNAAVKALKPFVQTY---------------------------MVA------------------ADSGV-----VGGI 760 (1089)
Q Consensus 731 ~~V~~aAa~Al~~l~~~y---------------------------~~~------------------~~~~~-----~~~~ 760 (1089)
..+++.+..++..+.... +.. ..... ....
T Consensus 205 ~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 284 (457)
T 1xm9_A 205 DKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDA 284 (457)
T ss_dssp CTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHH
T ss_pred hHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcch
Confidence 445555555555442000 000 00001 1455
Q ss_pred HHHHHHHhC-CCChhhhhhHHHHhhccchH-------hhhhhH--HHHHHHHhhhccccCCCCCCCHHHHHHHHHHHHHH
Q 001381 761 SLKYMEQLT-DPNPAIRRGSALALGVLPYE-------LLANSW--RDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSV 830 (1089)
Q Consensus 761 v~~~~~~L~-s~~~~~r~G~a~aLG~lp~~-------~~~~~~--~~i~~~L~~~~~~~~~~~~~d~e~R~~al~sL~~i 830 (1089)
++.++..|+ +.++..+..++-+|+.+-.. +.+..+ ..++..|+..+ ...+.+.|++|+.+|..+
T Consensus 285 l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL------~~~~~~v~~~A~~aL~nl 358 (457)
T 1xm9_A 285 IRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLL------QSGNSDVVRSGASLLSNM 358 (457)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHT------TCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHH------hCCCHhHHHHHHHHHHHH
Confidence 777777775 56688888888888877421 101111 12344555554 345689999999999988
Q ss_pred HhhhccccccccccCCcchhhhhhhhHHHHHHHHHHhcccCCCCCCCCcchHHHHHHHHHHHHHHHHhhccCCCCCCCCC
Q 001381 831 CETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEICTYILCKRDFVPSPEKP 910 (1089)
Q Consensus 831 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~L~DYT~D~RGDVGSwVR~aa~~~l~~l~~ll~~~~~~~~~~~~ 910 (1089)
...-. .........+..|++.|..-+.+ + ..---|-.+++.++..++ .. +
T Consensus 359 s~~~~----------------~~~~i~~~~i~~Lv~lL~~~~~~-~-~~~~~v~~~~l~~l~ni~---~~-~-------- 408 (457)
T 1xm9_A 359 SRHPL----------------LHRVMGNQVFPEVTRLLTSHTGN-T-SNSEDILSSACYTVRNLM---AS-Q-------- 408 (457)
T ss_dssp HTSGG----------------GHHHHHHHTHHHHHHTTTSCCSC-S-TTHHHHHHHHHHHHHHHH---TT-C--------
T ss_pred hcCHH----------------HHHHHHHhhhHHHHHhccCCCCC-C-CCcHHHHHHHHHHHHHHH---hc-C--------
Confidence 64210 11122345678888888642221 1 112235567777776653 20 0
Q ss_pred ccccccCCCCccccccccCHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHhhcc
Q 001381 911 QEVKSELPGNVTAEKTLFDANLATNLVAGIVKQAVEK-MDKLREAAAKVLRRILYNK 966 (1089)
Q Consensus 911 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~llrq~~Ek-iD~vR~~A~~~L~~l~~~~ 966 (1089)
......+.+. ..+..|+++..-+ -+++|..|..+|..++.+.
T Consensus 409 ----------~~~~~~i~~~----g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~ 451 (457)
T 1xm9_A 409 ----------PQLAKQYFSS----SMLNNIINLCRSSASPKAAEAARLLLSDMWSSK 451 (457)
T ss_dssp ----------THHHHHHCCH----HHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSST
T ss_pred ----------HHHHHHHHHc----CCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcch
Confidence 0111122222 3344555555555 7899999999999998665
No 70
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=96.59 E-value=3 Score=53.53 Aligned_cols=427 Identities=13% Similarity=0.026 Sum_probs=212.2
Q ss_pred ChhHHHHHHHHHHHHHhhhCcc----hhhhHHHHHHhhcCC----CCCCcchHHHHHHHHHHHhcCC--CCCCcccchHH
Q 001381 397 DTVVRWSAAKGIGRITSCLTSS----LSEEVFSSVLELFSP----GEGDGSWHGGCLALAELARRGL--LLPSSLPKVVP 466 (1089)
Q Consensus 397 dt~vR~saAK~l~rI~~~L~~~----~a~~vi~~il~~l~~----~~~~~~wHg~~LaLael~~~~l--l~p~~l~~il~ 466 (1089)
+..+|+-+|.-|...+..+|.+ ....+=+.+++.+.. .....-....|.++++++.+-. --|+-+++++.
T Consensus 56 ~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~~i~~l~~ 135 (980)
T 3ibv_A 56 KPSTRLICLQTLSEKVREWNNESNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWNDFFASLQG 135 (980)
T ss_dssp CHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCChhhhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCchHHHHHHH
Confidence 7899999999999988899988 777777777765532 1222334678999999988753 23333444332
Q ss_pred HH------------HHhhh---hhcccccc-------CCChhhhhh-----------hhHHHHHhhhc-cCccc----hh
Q 001381 467 VI------------VKALH---YDIRRGSH-------SVGSHVRDA-----------AAYVCWAFGRA-YCHTD----MR 508 (1089)
Q Consensus 467 ~i------------~~~L~---f~~r~~~~-------svG~~VRDA-----------acfi~WslaR~-~~~~~----l~ 508 (1089)
.+ ++.|. =|.-.... ..-..++|+ .|+-++.-... -+++. |+
T Consensus 136 ~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~ 215 (980)
T 3ibv_A 136 VIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQ 215 (980)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HhcCCChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHH
Confidence 22 22222 22111100 011233444 22222222111 11111 11
Q ss_pred ---H---------HHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHhcccCCCCCCccceecc---ccc-----------c
Q 001381 509 ---N---------ILEQIAPHLLTVACYDREVNCRRAAAAAFQENVGRQGNYPHGIDIVNTA---DYF-----------S 562 (1089)
Q Consensus 509 ---~---------~~~~l~~~Ll~~alfD~e~~iRRaAsAAlQE~vGR~g~~p~GI~il~~~---d~~-----------~ 562 (1089)
. +++.=+.+++...+-| ..+|.+|..+|.|+++|.....+...++... +.+ -
T Consensus 216 ~l~s~i~wi~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~ 293 (980)
T 3ibv_A 216 VYAQWVSWININLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNF 293 (980)
T ss_dssp HHHHHTTTSCHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHH
T ss_pred HHHHHHhhcCHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHH
Confidence 1 1112223334444433 5789999999999999975321212222111 111 0
Q ss_pred hhhhHHHHHHHHHHH---Hhhh------------cchHHHHHHHHhCccCCCCHHHHHHHHHHHHHHHcc----C-----
Q 001381 563 LSSRVYSYLHVAVFI---AQYE------------GYLYPFVDELLYNKICHWDKVLRELAAEALSALVKY----D----- 618 (1089)
Q Consensus 563 v~~r~~a~~~va~~v---a~~~------------~Y~~~li~~Ll~~~l~h~D~~iR~laa~aL~~L~~~----~----- 618 (1089)
+....+-+.+++... ++.+ .....+++.++. ...|.|.++-..+-.-+..+... .
T Consensus 294 ~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~-~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~ 372 (980)
T 3ibv_A 294 DEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIR-YLSDDYDETSTAVFPFLSDLLVSLRKESSSKEL 372 (980)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHH-HHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHH-HhCCCchhHHHHHHHHHHHHHHHHHhccccccc
Confidence 011111111111111 1111 233456666664 66788888877776666655431 1
Q ss_pred ch---hhHHHHHHHhccccCCC---C-------------hhhHHHHHHHHHHHHHHHhcccccCChhHHHHHHhhhHHHH
Q 001381 619 PE---YFANFILEKLTPFTLST---D-------------LCTRHGATLAAGEVVLALCKYDYALPADKQKIVAGIVPGIE 679 (1089)
Q Consensus 619 ~~---~~~~~vlp~Ll~~l~~~---d-------------~~~RHG~lLalaevl~~l~~~~~~~~~~~~~~i~~i~~~~~ 679 (1089)
+. .+...+++.++.++.-+ + .+.|+-.- .+-+++..+. ++.....+.+.+....
T Consensus 373 ~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~------~~~~l~~~~~~i~~~l 445 (980)
T 3ibv_A 373 SASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSID------SSLFSSYMYSAITSSL 445 (980)
T ss_dssp CHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHC------HHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcC------hHHHHHHHHHHHHHHH
Confidence 11 22334444444444211 1 13444322 2222222221 1222331222232222
Q ss_pred hhhhccCcchH-HHHHHHHHHHHHhhhcCCCC-------chhhHHHHHHHHHHhc-----CCCcHHHHHHHHHHHHHHHH
Q 001381 680 KARLYRGKGGE-IMRSAVSRFIECISLSFVSL-------PEKTKRSLLDTLNENL-----RHPNSQIQNAAVKALKPFVQ 746 (1089)
Q Consensus 680 ~~~l~r~~~ge-lir~a~~~lI~~ls~~~lp~-------~~~~~~~~~~~L~~~L-----~~~~~~V~~aAa~Al~~l~~ 746 (1089)
...+..+...+ --+||+...+.+++.+ ++. ....++....++...+ .++.+.||..+.+.+..+..
T Consensus 446 ~~~l~~~~~~~W~~~EaaL~~l~~iaE~-i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~ 524 (980)
T 3ibv_A 446 STAATLSPENSWQLIEFALYETYIFGEG-LRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYAS 524 (980)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHHHHTTTT-CCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGG
T ss_pred HHHhcccCCCCHHHHHHHHHHHHHHHhh-ccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 22222111122 3688888888887752 221 0011122333333322 37788999999888887766
Q ss_pred HhhhccCcchhhhhHHHHHH--HhCCCChhhhhhHHHHhhccchHh---hhhhHHHHHHHHhhhccccCCC-CCC-----
Q 001381 747 TYMVAADSGVVGGISLKYME--QLTDPNPAIRRGSALALGVLPYEL---LANSWRDVLLKLCSCCLIEENP-EDR----- 815 (1089)
Q Consensus 747 ~y~~~~~~~~~~~~v~~~~~--~L~s~~~~~r~G~a~aLG~lp~~~---~~~~~~~i~~~L~~~~~~~~~~-~~~----- 815 (1089)
.+ .. ..+....++..++. ++.+.++..+..+++++..+-+.. +.++...++..+-........+ ...
T Consensus 525 ~~-~~-~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~ 602 (980)
T 3ibv_A 525 FF-DY-ESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVSPVTDMDAPVP 602 (980)
T ss_dssp GG-GT-CCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSC
T ss_pred HH-hc-CchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcCcCCCCCccccccc
Confidence 43 22 23444666667777 666777778888888887774332 3466777887776554321110 111
Q ss_pred ---------CHHHHHHHHHHHHHHHhhhcc
Q 001381 816 ---------DTEARVNAVRGLVSVCETLTQ 836 (1089)
Q Consensus 816 ---------d~e~R~~al~sL~~i~~~~g~ 836 (1089)
..+.+....++++.++...+.
T Consensus 603 ~~~~~~~~~~~~~ql~L~eaig~li~~~~~ 632 (980)
T 3ibv_A 603 TLNSSIRNSDFNSQLYLFETVGVLISSGNL 632 (980)
T ss_dssp CHHHHHHTTTHHHHHHHHHHHHHHHHHSCC
T ss_pred chhhhcccCCchHHHHHHHHHHHHHhCCCC
Confidence 235788899999998876553
No 71
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=96.43 E-value=3.9 Score=52.91 Aligned_cols=355 Identities=15% Similarity=0.150 Sum_probs=192.5
Q ss_pred hhhhhhhhHHHHHhhhccCccchhHHHHHHHHHHHHHHhcCCCc---hhhHHHHHHHHHHhcccCCCCCCccceeccccc
Q 001381 485 SHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREV---NCRRAAAAAFQENVGRQGNYPHGIDIVNTADYF 561 (1089)
Q Consensus 485 ~~VRDAacfi~WslaR~~~~~~l~~~~~~l~~~Ll~~alfD~e~---~iRRaAsAAlQE~vGR~g~~p~GI~il~~~d~~ 561 (1089)
=+.+-|+||.+.|+|.+..++.-.+++..+...|+ .-+-.+.. -.+.|+..-+ .+||+.
T Consensus 493 W~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll-~L~e~~~~kd~k~~vas~i~~--vlgrY~--------------- 554 (1073)
T 3gjx_A 493 WKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLL-GLCEQKRGKDNKAIIASNIMY--IVGQYP--------------- 554 (1073)
T ss_dssp HHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHH-HHHHHSCSHHHHHHHHHHHHH--HHHHCH---------------
T ss_pred HHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHh-cccccccccchhHHHHHHHHH--HHhhhH---------------
Confidence 56789999999999988886555678888888765 33333321 2223322222 567773
Q ss_pred chhhhHHHHHHHHHHHHhhhcchHHHHHHHHhCccCCCCHHHHHHHHHHHHHHHccCchhh-----------HHHHHHHh
Q 001381 562 SLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNKICHWDKVLRELAAEALSALVKYDPEYF-----------ANFILEKL 630 (1089)
Q Consensus 562 ~v~~r~~a~~~va~~va~~~~Y~~~li~~Ll~~~l~h~D~~iR~laa~aL~~L~~~~~~~~-----------~~~vlp~L 630 (1089)
.+++.+++|.+++++.|+. .+.+.+..++..|+.|+..++...+..+ ...++..+
T Consensus 555 -------------~wl~~h~~~L~~vl~~L~~-~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~ 620 (1073)
T 3gjx_A 555 -------------RFLRAHWKFLKTVVNKLFE-FMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNI 620 (1073)
T ss_dssp -------------HHHHHCHHHHHHHHHHHHH-HTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSH
T ss_pred -------------HHHHhCHHHHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHH
Confidence 2345667899999999996 5677789999999999999998776543 23333333
Q ss_pred ccccCCCChhhHHHHHHHHHHHHHHHhcccccCChhHHHHH--------HhhhHHHHh-hhhccCcchHHHHHHHHHHHH
Q 001381 631 TPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPADKQKIV--------AGIVPGIEK-ARLYRGKGGEIMRSAVSRFIE 701 (1089)
Q Consensus 631 l~~l~~~d~~~RHG~lLalaevl~~l~~~~~~~~~~~~~~i--------~~i~~~~~~-~~l~r~~~gelir~a~~~lI~ 701 (1089)
-.....-+....|..+=|+|.++.+...... -+..++.+ ..+.++..+ ..+.. ..+.++ -++.+++
T Consensus 621 ~~~~~~l~~~~~~~lyeav~~vi~~~p~~~~--~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~--d~~~i~-~l~~il~ 695 (1073)
T 3gjx_A 621 NTIICDLQPQQVHTFYEAVGYMIGAQTDQTV--QEHLIEKYMLLPNQVWDSIIQQATKNVDILK--DPETVK-QLGSILK 695 (1073)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHTTCCCHHH--HHHHHHHHTHHHHHHHHHHHHHHHHCGGGGG--CHHHHH-HHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHhCCCcch--HHHHHHHHHHHHHHHHHHHHHHhhcCchhcc--ChHHHH-HHHHHHh
Confidence 3333445667888888889988876542110 01111111 111111100 00111 122222 2344444
Q ss_pred H---hhh-cCCCCchhhHHHHHHHHHH----------hc------CCCcHHH--HHHHHHHHHHHHHHhhhccCc--chh
Q 001381 702 C---ISL-SFVSLPEKTKRSLLDTLNE----------NL------RHPNSQI--QNAAVKALKPFVQTYMVAADS--GVV 757 (1089)
Q Consensus 702 ~---ls~-~~lp~~~~~~~~~~~~L~~----------~L------~~~~~~V--~~aAa~Al~~l~~~y~~~~~~--~~~ 757 (1089)
+ +|. .+.+........|.+++.- .. ....+.+ ...+.++.-.++..|..+.+. ...
T Consensus 696 ~n~~v~~~~g~~f~~~~~~i~~~~l~~y~~~s~~i~~~v~~~g~~~~~~~~~~~~r~ik~eil~l~~~~i~~~~~~~~v~ 775 (1073)
T 3gjx_A 696 TNVRACKAVGHPFVIQLGRIYLDMLNVYKCLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVA 775 (1073)
T ss_dssp HHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGSSHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred hhHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 3 121 1222222222333333211 11 0111111 122333333456666554321 112
Q ss_pred hhhHHHHHHHh----CCCChhhhhhHHHHhhccc----hHhhhhhHHHHHHHHhhhcc--ccCCCCCCCHHHHHHHHHHH
Q 001381 758 GGISLKYMEQL----TDPNPAIRRGSALALGVLP----YELLANSWRDVLLKLCSCCL--IEENPEDRDTEARVNAVRGL 827 (1089)
Q Consensus 758 ~~~v~~~~~~L----~s~~~~~r~G~a~aLG~lp----~~~~~~~~~~i~~~L~~~~~--~~~~~~~~d~e~R~~al~sL 827 (1089)
..+++.+++.+ +.+.|.+|..-.+-+++.- .....+.+..|++.+..++. +... -...+|.|.+-.+=+
T Consensus 776 ~~~i~pl~~~vl~dY~~~~p~~r~~evL~l~s~iv~k~~~~~~~~~~~il~~vf~~Tl~mi~~~-f~~~Pe~r~~ff~ll 854 (1073)
T 3gjx_A 776 ENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKD-FEEYPEHRTNFFLLL 854 (1073)
T ss_dssp HHTSHHHHHHTHHHHHHSCGGGCCTHHHHHHHHHHHHHGGGTGGGHHHHHHHHHHHHHHHHSSC-SSSCHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHhCC-cccCcHHHHHHHHHH
Confidence 34445455443 2445666665555555542 12234667788888877753 2222 456899999988877
Q ss_pred HHHHhhhccccccccccCCcchhhhhhhhHHHHHHHHHHhcccCCCCCCCCcchHHHHHHHHHHHHHHHHhh
Q 001381 828 VSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEICTYILC 899 (1089)
Q Consensus 828 ~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~L~DYT~D~RGDVGSwVR~aa~~~l~~l~~ll~ 899 (1089)
..+...-.... +.+....+..++++++-|+..= -|..+-.|++-+..++.
T Consensus 855 ~~~~~~~f~~l-----------~~l~~~~~~~~i~~i~wa~kh~-----------~r~i~~~~l~~~~~ll~ 904 (1073)
T 3gjx_A 855 QAVNSHCFPAF-----------LAIPPAQFKLVLDSIIWAFKHT-----------MRNVADTGLQILFTLLQ 904 (1073)
T ss_dssp HHHHHHCGGGT-----------TTSCHHHHHHHHHHHHHHHTCS-----------SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHH-----------HcCCHHHHHHHHHHHHHHcCCC-----------ChhHHHHHHHHHHHHHH
Confidence 77665421100 0111345677899999888441 27888888877776665
No 72
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=96.38 E-value=0.55 Score=60.38 Aligned_cols=470 Identities=9% Similarity=0.064 Sum_probs=233.4
Q ss_pred chHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhCcch--hhhHHHHHHhhcCCCCCCcchHHHHHHHHHHHhcCC
Q 001381 378 VPDILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSL--SEEVFSSVLELFSPGEGDGSWHGGCLALAELARRGL 455 (1089)
Q Consensus 378 v~e~vE~iI~~ll~~L~d~dt~vR~saAK~l~rI~~~L~~~~--a~~vi~~il~~l~~~~~~~~wHg~~LaLael~~~~l 455 (1089)
++..++..+..|.......+..++-.+-+.++.-+.-.|... .+.+++.++..++. +...-.+|=+|.|+..++.
T Consensus 187 ~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~~~~ll~~l~~~L~~---~~~r~~A~ecL~ei~~k~~ 263 (980)
T 3ibv_A 187 MSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVNEPCMNLLYSFLQI---EELRCAACETMTEIVNKKM 263 (980)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHHHCHHHHHHHHHHTTS---HHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHhhhcchHHHHHHHHcCC---hHHHHHHHHHHHHHHHcCC
Confidence 456666666666555544666777666667666666655543 36788888888854 2334458888999999986
Q ss_pred CCCCcccchHHHHHHhhhhhccccccCCChhhhhhhhHHHHHhhhccCccch---hHHHHHHHHHHHHHHhcCCC---ch
Q 001381 456 LLPSSLPKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDM---RNILEQIAPHLLTVACYDRE---VN 529 (1089)
Q Consensus 456 l~p~~l~~il~~i~~~L~f~~r~~~~svG~~VRDAacfi~WslaR~~~~~~l---~~~~~~l~~~Ll~~alfD~e---~~ 529 (1089)
-+.+++ .++..+--.=.++. -+.+ ..+.+.. ...+..+...++.. --+++ ..
T Consensus 264 ~~~~k~-~li~~l~L~~~~~~---------l~~~-----------~~D~d~~~~la~L~~~~ge~l~~~-~~~~~~~~~~ 321 (980)
T 3ibv_A 264 KPLEKL-NLLNILNLNLFFSK---------SQEQ-----------STDPNFDEHVAKLINAQGVELVAI-KSDPSELSPE 321 (980)
T ss_dssp CHHHHH-HHHHHHHHHHHHCC-------------------------CCHHHHHHHHHHHHHHHHHHHHH-HTSCC--CHH
T ss_pred ChhhHH-HHHHHHhHHHHHHH---------Hhcc-----------cccHHHHHHHHHHHHHHHHHHHHH-ccCccccchh
Confidence 322222 22222100000110 0000 1122111 12223333343333 11221 12
Q ss_pred hhHHHHHHHHHHhccc-CCCCCCc-ccee-cccccchhhhHHHHHHHHHHHH-------hhhcchHHHHHHHHhCcc---
Q 001381 530 CRRAAAAAFQENVGRQ-GNYPHGI-DIVN-TADYFSLSSRVYSYLHVAVFIA-------QYEGYLYPFVDELLYNKI--- 596 (1089)
Q Consensus 530 iRRaAsAAlQE~vGR~-g~~p~GI-~il~-~~d~~~v~~r~~a~~~va~~va-------~~~~Y~~~li~~Ll~~~l--- 596 (1089)
.|-.+.+.++.++.-. +..-|.- ++.. +.+| -..|+..-.... .+..|...+++.++.+..
T Consensus 322 ~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~F------w~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~ 395 (980)
T 3ibv_A 322 LKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPF------LSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDE 395 (980)
T ss_dssp HHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHH------HHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCT
T ss_pred hhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHH------HHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCC
Confidence 3333344444333221 1111110 1111 1111 122333222211 223566667777776311
Q ss_pred -CCCCH-----------HHHHHHHHHHHHHHccCchhhHH----HHHHHhcccc---CCCChhhHHHHHHHHHHHHHHHh
Q 001381 597 -CHWDK-----------VLRELAAEALSALVKYDPEYFAN----FILEKLTPFT---LSTDLCTRHGATLAAGEVVLALC 657 (1089)
Q Consensus 597 -~h~D~-----------~iR~laa~aL~~L~~~~~~~~~~----~vlp~Ll~~l---~~~d~~~RHG~lLalaevl~~l~ 657 (1089)
.+||. +.|+-.+..+..+....|+.+.. .+.+.+.+.+ .+.+|..++.++.+++.+.+++.
T Consensus 396 d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~ 475 (980)
T 3ibv_A 396 SQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLR 475 (980)
T ss_dssp TCCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCC
T ss_pred ccccccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhcc
Confidence 14543 67877775555555567765555 4444333333 24679999999999998887765
Q ss_pred ccccc--CChhHHHHHHhhhHHHHhhhhccCcchHHHHHHHHHHHHHhhhcCCCCchhhHHHHHHHHHH--hcCCCcHHH
Q 001381 658 KYDYA--LPADKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLPEKTKRSLLDTLNE--NLRHPNSQI 733 (1089)
Q Consensus 658 ~~~~~--~~~~~~~~i~~i~~~~~~~~l~r~~~gelir~a~~~lI~~ls~~~lp~~~~~~~~~~~~L~~--~L~~~~~~V 733 (1089)
..... ........+..++..+.+.+. .......+|.++|.+++..+. -+..+.+.++..+..+.. ++.+++..|
T Consensus 476 ~~~~~~~~~~~~lp~l~~ll~~ll~s~i-~~~~hp~V~~~~~~~l~rys~-~~~~~~~~l~~~L~~ll~~~gl~~~~~~V 553 (980)
T 3ibv_A 476 GPDAFFNEVDKSPTVLSQILALVTTSQV-CRHPHPLVQLLYMEILVRYAS-FFDYESAAIPALIEYFVGPRGIHNTNERV 553 (980)
T ss_dssp SGGGTBCSSSCCBCHHHHHHHHHHHSST-TTCCCHHHHHHHHHHHHHTGG-GGGTCCTTHHHHHHHHTSTTTTTCCCTTT
T ss_pred ccccccCcccchhHHHHHHHHHHHhCCC-CCCCCHHHHHHHHHHHHHHHH-HHhcCchhHHHHHHHHhccccccCCChhH
Confidence 42221 111122334455555544332 112356899999999998764 222334566777777777 888999999
Q ss_pred HHHHHHHHHHHHHHhhhccCcchhhhhHHHHHHHhCC-CCh------------------------hhhhhHHHHhhcc--
Q 001381 734 QNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLTD-PNP------------------------AIRRGSALALGVL-- 786 (1089)
Q Consensus 734 ~~aAa~Al~~l~~~y~~~~~~~~~~~~v~~~~~~L~s-~~~------------------------~~r~G~a~aLG~l-- 786 (1089)
+.+|+.|+..+++..-..- ....+.++..+-..|.. ..+ ..-.|.+..+++.
T Consensus 554 ~~~a~~af~~f~~~~~~~L-~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~ 632 (980)
T 3ibv_A 554 RPRAWYLFYRFVKSIKKQV-VNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNL 632 (980)
T ss_dssp HHHHHHHHHHHHHHTTTTC-SSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHhhHHh-hhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCCC
Confidence 9999999999988642211 11224455555444431 001 0222333333333
Q ss_pred chHhhhhhHHHHHHHHhhhcc---ccCCCCCCCHHHHH-HHHHHHHHHHhhhccccccccccCCcchhhhhhhhHHHHHH
Q 001381 787 PYELLANSWRDVLLKLCSCCL---IEENPEDRDTEARV-NAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMT 862 (1089)
Q Consensus 787 p~~~~~~~~~~i~~~L~~~~~---~~~~~~~~d~e~R~-~al~sL~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~ 862 (1089)
|...-...+..++.-|+.... ...+ ...+...+. ..+.+++.+...+... + +.. ..+...+.++.+
T Consensus 633 ~~e~~~~~l~~ll~pl~~~l~~~l~~~~-~~~~~~~~i~~~i~al~~lakgf~~~--~---~~~----~p~~~~f~~~~~ 702 (980)
T 3ibv_A 633 TPEEQALYCDSLINALIGKANAALSSDL-SALENIISVYCSLMAIGNFAKGFPAR--G---SEE----VAWLASFNKASD 702 (980)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTSC-C--CHHHHHHHHHHHHHHHHHTSCSC--C----CC----CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhcc-cCccHHHHHHHHHHHHHHHhccCCcc--c---CCC----CcHHHHHHHHHH
Confidence 222211223333333322211 1111 111221221 3455556655422110 0 000 113355677888
Q ss_pred HHHHhcccCCCCCCCCcchHHHHHHHHHHHHHHHH
Q 001381 863 SLFKALDDYSVDNRGDVGSWVREAAVDGLEICTYI 897 (1089)
Q Consensus 863 ~Ll~~L~DYT~D~RGDVGSwVR~aa~~~l~~l~~l 897 (1089)
.++..|+-|..+ .-||+++..++..++..
T Consensus 703 ~il~~l~~~~~~------~~irea~~~~~~r~i~~ 731 (980)
T 3ibv_A 703 EIFLILDRMGFN------EDIRGAVRFTSGRIINV 731 (980)
T ss_dssp HHHHHHHHSCCS------HHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhcCCc------HHHHHHHHHHHHHHHHH
Confidence 888888887544 35999999999887633
No 73
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.03 E-value=0.042 Score=70.01 Aligned_cols=222 Identities=13% Similarity=0.150 Sum_probs=156.7
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhCcchhhhHHHHHHhhcCCCCCCcchHH---HHHHHHHHHhcCC-CC
Q 001381 382 LEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSLSEEVFSSVLELFSPGEGDGSWHG---GCLALAELARRGL-LL 457 (1089)
Q Consensus 382 vE~iI~~ll~~L~d~dt~vR~saAK~l~rI~~~L~~~~a~~vi~~il~~l~~~~~~~~wHg---~~LaLael~~~~l-l~ 457 (1089)
+-..++.+++.+.|+.+.||-+|..+..-|+..+|++....+++.+++.+.. ...|.+ ++-.+..|+...- .+
T Consensus 93 ~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~kw~~k~~~l~~~~~~~~~~~~~~ 169 (986)
T 2iw3_A 93 IVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVE---TNKWQEKIAILAAFSAMVDAAKDQV 169 (986)
T ss_dssp HHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHHHSHHHH
T ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc---ccchHHHHHHHHHHHHHHHHhHHHH
Confidence 3357899999999999999999999999999999999999999999998842 246976 4445555554430 11
Q ss_pred CCcccchHHHHHHhhhhhccccccCCChhhhhhhhHHHHHhhhccCccchhHHHHHHHHHHHHHHhcCCCchhhHHHHHH
Q 001381 458 PSSLPKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAAAAA 537 (1089)
Q Consensus 458 p~~l~~il~~i~~~L~f~~r~~~~svG~~VRDAacfi~WslaR~~~~~~l~~~~~~l~~~Ll~~alfD~e~~iRRaAsAA 537 (1089)
...+|+++|++..++..-. ..|.+||.=..=+++...+..+++|++. +|+.++-+|+-
T Consensus 170 ~~~~~~~~p~~~~~~~d~k--------~~v~~~~~~~~~~~~~~~~n~d~~~~~~-----~~~~~~~~p~~--------- 227 (986)
T 2iw3_A 170 ALRMPELIPVLSETMWDTK--------KEVKAAATAAMTKATETVDNKDIERFIP-----SLIQCIADPTE--------- 227 (986)
T ss_dssp HHHHHHHHHHHHHHTTCSS--------HHHHHHHHHHHHHHGGGCCCTTTGGGHH-----HHHHHHHCTTH---------
T ss_pred HHhccchhcchHhhcccCc--------HHHHHHHHHHHHHHHhcCCCcchhhhHH-----HHHHHhcChhh---------
Confidence 2357999999987764433 6788988888888888888888888875 45566667643
Q ss_pred HHHHhcccC--CCCCCccceecccccchhhhHHHHHHHHHHHHhhhcchHHHHHHHHhCccCCCCHHHHHHHHHHHHHHH
Q 001381 538 FQENVGRQG--NYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNKICHWDKVLRELAAEALSALV 615 (1089)
Q Consensus 538 lQE~vGR~g--~~p~GI~il~~~d~~~v~~r~~a~~~va~~va~~~~Y~~~li~~Ll~~~l~h~D~~iR~laa~aL~~L~ 615 (1089)
.+|.|-..+ +| ++.+|==+ -+++--|+.++|..-...+.+-++--+.++|
T Consensus 228 ~~~~~~~l~~~tf------v~~v~~~~----------------------l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~ 279 (986)
T 2iw3_A 228 VPETVHLLGATTF------VAEVTPAT----------------------LSIMVPLLSRGLNERETGIKRKSAVIIDNMC 279 (986)
T ss_dssp HHHHHHHHTTCCC------CSCCCHHH----------------------HHHHHHHHHHHHTSSSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhhcCee------Eeeecchh----------------------HHHHHHHHHhhhccCcchhheeeEEEEcchh
Confidence 566666654 33 22221111 1244445556888888999999999999999
Q ss_pred ccCch-hhHHHHHHHhccccC-----CCChhhHHHHHHHHHHHHHHH
Q 001381 616 KYDPE-YFANFILEKLTPFTL-----STDLCTRHGATLAAGEVVLAL 656 (1089)
Q Consensus 616 ~~~~~-~~~~~vlp~Ll~~l~-----~~d~~~RHG~lLalaevl~~l 656 (1089)
+...+ ......+|.|++.+. -.|.+.|.=+--|+.-+..+-
T Consensus 280 ~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~ 326 (986)
T 2iw3_A 280 KLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRVG 326 (986)
T ss_dssp TTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHH
T ss_pred hhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhh
Confidence 85332 233456777776663 367888886666666665553
No 74
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=95.84 E-value=0.069 Score=68.59 Aligned_cols=117 Identities=15% Similarity=0.058 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHhcccCCCCCCccceecccccchhhhHHHHHHHHHHHHhhhcchHHHH
Q 001381 509 NILEQIAPHLLTVACYDREVNCRRAAAAAFQENVGRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFV 588 (1089)
Q Consensus 509 ~~~~~l~~~Ll~~alfD~e~~iRRaAsAAlQE~vGR~g~~p~GI~il~~~d~~~v~~r~~a~~~va~~va~~~~Y~~~li 588 (1089)
+++..+...+...+.-++.+ .|.++..-+|-++-|+=.+ +. .-. ...+.
T Consensus 797 ~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~------l~--------~~~----------------~~~i~ 845 (997)
T 1vsy_5 797 NHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQ------LT--------EEE----------------KNKIL 845 (997)
T ss_dssp HHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTT------SC--------TTH----------------HHHTH
T ss_pred HHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHH------cC--------HHH----------------HHHHH
Confidence 34444444443233336888 9999999999998876321 10 000 11233
Q ss_pred HHHHhCccCCCC-HHHHHHHHHHHHHHHccC-chhhHHHHHHHhccccCC------------CChhhHHHHHHHHHHHHH
Q 001381 589 DELLYNKICHWD-KVLRELAAEALSALVKYD-PEYFANFILEKLTPFTLS------------TDLCTRHGATLAAGEVVL 654 (1089)
Q Consensus 589 ~~Ll~~~l~h~D-~~iR~laa~aL~~L~~~~-~~~~~~~vlp~Ll~~l~~------------~d~~~RHG~lLalaevl~ 654 (1089)
.++-..|.|.. .+||+.||.+|+-+..-. +......++..+.+++.. .+...|||++|||+.++.
T Consensus 846 -~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~ 924 (997)
T 1vsy_5 846 -EFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIIS 924 (997)
T ss_dssp -HHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHT
T ss_pred -HHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHh
Confidence 34445788999 999999999999997655 533334566666666533 123799999999999998
Q ss_pred HHh
Q 001381 655 ALC 657 (1089)
Q Consensus 655 ~l~ 657 (1089)
+++
T Consensus 925 a~P 927 (997)
T 1vsy_5 925 AFP 927 (997)
T ss_dssp TCS
T ss_pred hCC
Confidence 875
No 75
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=95.78 E-value=4.3 Score=47.57 Aligned_cols=310 Identities=11% Similarity=0.015 Sum_probs=158.2
Q ss_pred ChhHHHHHHHHHHHHHhhhCcchhhhHH--------------HHHHhhcCCCC----------CCcchHHHHHHHHHHHh
Q 001381 397 DTVVRWSAAKGIGRITSCLTSSLSEEVF--------------SSVLELFSPGE----------GDGSWHGGCLALAELAR 452 (1089)
Q Consensus 397 dt~vR~saAK~l~rI~~~L~~~~a~~vi--------------~~il~~l~~~~----------~~~~wHg~~LaLael~~ 452 (1089)
++.+|+.||.+|..|+..=|........ +.++.++.... .+..-|-.|-|+.-|..
T Consensus 95 ~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~n 174 (458)
T 3nmz_A 95 SKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMK 174 (458)
T ss_dssp CHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHH
Confidence 4799999999999999987765433211 12222232221 11223445555544443
Q ss_pred cCCCCCC-c--c--cchHHHHHHhhhhhcc-cccc--CCChhhhhhhhHHHHHhhhccCccchhHHH--HHHHHHHHHHH
Q 001381 453 RGLLLPS-S--L--PKVVPVIVKALHYDIR-RGSH--SVGSHVRDAAAYVCWAFGRAYCHTDMRNIL--EQIAPHLLTVA 522 (1089)
Q Consensus 453 ~~ll~p~-~--l--~~il~~i~~~L~f~~r-~~~~--svG~~VRDAacfi~WslaR~~~~~~l~~~~--~~l~~~Ll~~a 522 (1089)
-+. -++ + + ..+++.+..-|.-+.. .+.. +.-..++-.|+.+++.+++.-+ ..+..+ ..=+...|+.-
T Consensus 175 ls~-~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~--~~k~~i~~~~GaIp~LV~L 251 (458)
T 3nmz_A 175 LSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDV--ANKATLCSMKGCMRALVAQ 251 (458)
T ss_dssp HTT-SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHCHHHHHHHHHG
T ss_pred hcC-CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCc--ccHHHHHHcCCcHHHHHHH
Confidence 321 111 1 1 2245555555532211 1110 0002356667777777776533 223333 22334455677
Q ss_pred hcCCCchhhHHHHHHHHHHhcccCCCCCCccceecccccchhhhHHHHHHHHHHHHhhhcchHHHHHHHHhCccCCCCHH
Q 001381 523 CYDREVNCRRAAAAAFQENVGRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNKICHWDKV 602 (1089)
Q Consensus 523 lfD~e~~iRRaAsAAlQE~vGR~g~~p~GI~il~~~d~~~v~~r~~a~~~va~~va~~~~Y~~~li~~Ll~~~l~h~D~~ 602 (1089)
+...+..+|..|..||..+-++-+. +....+.+.. -.++|++-| +.+.|..
T Consensus 252 L~s~~~~v~~~A~~aL~nLs~~~~~------------------------~~k~~I~~~G-aI~~LV~lL----l~s~~~~ 302 (458)
T 3nmz_A 252 LKSESEDLQQVIASVLRNLSWRADV------------------------NSKKTLREVG-SVKALMECA----LEVKKES 302 (458)
T ss_dssp GGCSCHHHHHHHHHHHHHHTSSCCH------------------------HHHHHHHHTT-HHHHHHHHH----TTCCSHH
T ss_pred HhCCCHHHHHHHHHHHHHHhcCCCH------------------------HHHHHHHHcC-CHHHHHHHH----hcCCCHH
Confidence 7788899999999998776432110 0011122111 123344333 3466899
Q ss_pred HHHHHHHHHHHHHccCchh---hH--HHHHHHhccccCCCCh----hhHHHHHHHHHHHHHHHhcccccCChhHHHHHH-
Q 001381 603 LRELAAEALSALVKYDPEY---FA--NFILEKLTPFTLSTDL----CTRHGATLAAGEVVLALCKYDYALPADKQKIVA- 672 (1089)
Q Consensus 603 iR~laa~aL~~L~~~~~~~---~~--~~vlp~Ll~~l~~~d~----~~RHG~lLalaevl~~l~~~~~~~~~~~~~~i~- 672 (1089)
+++.|+.+|.+|+...++. +. .-.+|.|.+.+.+.+. .++.-++-+|..+...+.. .++....+.
T Consensus 303 v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~-----~~~~~~~i~~ 377 (458)
T 3nmz_A 303 TLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIAT-----NEDHRQILRE 377 (458)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTT-----CHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccC-----CHHHHHHHHH
Confidence 9999999999999844331 21 2356666666654322 3455455555444321111 122222221
Q ss_pred -hhhHHHHhhhhccCcchHHHHHHHHHHHHHhhhcCCCCchhhH-HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 001381 673 -GIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLPEKTK-RSLLDTLNENLRHPNSQIQNAAVKALKPFVQ 746 (1089)
Q Consensus 673 -~i~~~~~~~~l~r~~~gelir~a~~~lI~~ls~~~lp~~~~~~-~~~~~~L~~~L~~~~~~V~~aAa~Al~~l~~ 746 (1089)
+.++.+.+ +.+. +..-+++.+|..|.+++.........+. ...+..|.+.|...++.+++.|+.|+..+..
T Consensus 378 ~G~i~~Lv~--LL~~-~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~ 450 (458)
T 3nmz_A 378 NNCLQTLLQ--HLKS-HSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMA 450 (458)
T ss_dssp TTHHHHHHH--HSSC-SCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHT
T ss_pred cccHHHHHH--HHcC-CChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence 22333321 2232 2234566666677777632110001111 2345567777889999999999999987764
No 76
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=95.64 E-value=8.2 Score=49.78 Aligned_cols=132 Identities=15% Similarity=0.168 Sum_probs=85.9
Q ss_pred HHHHHHHccCchhhHHHHHHHhccccCC--CChhhHHHHHHHHHHHHHHHhcccccCChhHHHHHHhhhHHHHhhh-hcc
Q 001381 609 EALSALVKYDPEYFANFILEKLTPFTLS--TDLCTRHGATLAAGEVVLALCKYDYALPADKQKIVAGIVPGIEKAR-LYR 685 (1089)
Q Consensus 609 ~aL~~L~~~~~~~~~~~vlp~Ll~~l~~--~d~~~RHG~lLalaevl~~l~~~~~~~~~~~~~~i~~i~~~~~~~~-l~r 685 (1089)
.+|.-++...+..+...+++.+.+.+.+ .+|..|..+++|++.|..+... +....-+..+++.+..-. ..+
T Consensus 435 d~L~~l~~l~~~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~------~~e~~~l~~vi~~Ll~l~~~~~ 508 (1023)
T 4hat_C 435 EVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSE------DTEKRFVVTVIKDLLDLCVKKR 508 (1023)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCH------HHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHhccCHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCc------hhHHHHHHHHHHHHHHhhhccc
Confidence 7778888777777777778877665543 6899999999999999865431 111122333333332210 013
Q ss_pred Ccc-hHHHHHHHHHHHHHhhhcCCCCchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Q 001381 686 GKG-GEIMRSAVSRFIECISLSFVSLPEKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQT 747 (1089)
Q Consensus 686 ~~~-gelir~a~~~lI~~ls~~~lp~~~~~~~~~~~~L~~~L~~~~~~V~~aAa~Al~~l~~~ 747 (1089)
|+. ...+|..+|-.++..+. -+..+.+.+...+..+-.++..+.+.|+.+|+.|+..++..
T Consensus 509 ~~d~k~~v~~t~~~~lGry~~-wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~ 570 (1023)
T 4hat_C 509 GKDNKAVVASDIMYVVGQYPR-FLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQK 570 (1023)
T ss_dssp SHHHHHHHHHHHHHHHHTCHH-HHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred cCcchHHHHHHHHHHHHHHHH-HHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Confidence 332 23577788888887553 11112345666667777888778899999999999988875
No 77
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=95.52 E-value=1.6 Score=54.09 Aligned_cols=198 Identities=14% Similarity=0.113 Sum_probs=114.0
Q ss_pred HHHHHHHhhcCCCChh---HHHHHHHHHHHHHhhhCcch------hhhHHHHHHhhcCCC-CCCc-------chH-----
Q 001381 384 EIIEILLSGLRDTDTV---VRWSAAKGIGRITSCLTSSL------SEEVFSSVLELFSPG-EGDG-------SWH----- 441 (1089)
Q Consensus 384 ~iI~~ll~~L~d~dt~---vR~saAK~l~rI~~~L~~~~------a~~vi~~il~~l~~~-~~~~-------~wH----- 441 (1089)
..+..|+..|.+..+. +|..||.+|+||+-.-.+.. .-..|+.++++|.+. ..+. -.+
T Consensus 498 Gal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~f 577 (778)
T 3opb_A 498 GAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNY 577 (778)
T ss_dssp THHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHH
T ss_pred CCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHH
Confidence 4567777777766544 89999999999995543332 137899999999742 1111 021
Q ss_pred HHHHHHHHHHhcCCC----CCC-ccc--chHHHHHHhhhhhccccccCCChhhhhhhhHHHHHhhhccCccch-hHHHH-
Q 001381 442 GGCLALAELARRGLL----LPS-SLP--KVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDM-RNILE- 512 (1089)
Q Consensus 442 g~~LaLael~~~~ll----~p~-~l~--~il~~i~~~L~f~~r~~~~svG~~VRDAacfi~WslaR~~~~~~l-~~~~~- 512 (1089)
-+++||.-|+...-- ... .+. ..+|.+..-|.-+ ...||.|||-.+-.++- +++.+ +.+..
T Consensus 578 eAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~--------n~~VrrAA~elI~NL~~--~~e~i~~k~~~~ 647 (778)
T 3opb_A 578 EALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDE--------NVPLQRSTLELISNMMS--HPLTIAAKFFNL 647 (778)
T ss_dssp HHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCS--------SHHHHHHHHHHHHHHHT--SGGGTGGGTSCC
T ss_pred HHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCC--------CHHHHHHHHHHHHHHhC--CcHHHHHHHHhh
Confidence 478888888764200 001 122 2556665544322 25799999999888875 33322 12210
Q ss_pred --HH---HHHHHHHHhcCCCchhhHHHHHHHHHHhcccCCCCCCccceecccccchhhhHHHHHHHHHHHHhhhcchHHH
Q 001381 513 --QI---APHLLTVACYDREVNCRRAAAAAFQENVGRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPF 587 (1089)
Q Consensus 513 --~l---~~~Ll~~alfD~e~~iRRaAsAAlQE~vGR~g~~p~GI~il~~~d~~~v~~r~~a~~~va~~va~~~~Y~~~l 587 (1089)
.- =.++++.-+-..+..+||||+.||-- ...++-.++..+.+-++..+.+
T Consensus 648 ~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAn-------------------------Lts~~~~ia~~ll~~~~gi~~L 702 (778)
T 3opb_A 648 ENPQSLRNFNILVKLLQLSDVESQRAVAAIFAN-------------------------IATTIPLIAKELLTKKELIENA 702 (778)
T ss_dssp SSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHH-------------------------HHHHCHHHHHHHTTCHHHHHHH
T ss_pred cCchhhccHHHHHHHHcCCCHHHHHHHHHHHHH-------------------------hcCCChHHHHHHHHccccHHHH
Confidence 11 02344455556788999999988632 2222233333333322222333
Q ss_pred HHHHHhCccCCCCHHHHHHHHHHHHHHHccCc
Q 001381 588 VDELLYNKICHWDKVLRELAAEALSALVKYDP 619 (1089)
Q Consensus 588 i~~Ll~~~l~h~D~~iR~laa~aL~~L~~~~~ 619 (1089)
++-|-+- +.|.++|.-++.++.+++...|
T Consensus 703 l~lL~~~---~~~~~l~~R~~~~l~NL~~~~~ 731 (778)
T 3opb_A 703 IQVFADQ---IDDIELRQRLLMLFFGLFEVIP 731 (778)
T ss_dssp HHHHHHT---TTCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHhcc---CCCHHHHHHHHHHHHHHHHhhc
Confidence 3322211 5899999999999999987544
No 78
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.40 E-value=0.35 Score=61.78 Aligned_cols=229 Identities=17% Similarity=0.156 Sum_probs=149.7
Q ss_pred cchHHHHHHHHhCccCCCCHHHHHHHHHHHHHHHccCchhhHHHHHHHhccccCCC-ChhhHHHHHHHHHHHHHHHhccc
Q 001381 582 GYLYPFVDELLYNKICHWDKVLRELAAEALSALVKYDPEYFANFILEKLTPFTLST-DLCTRHGATLAAGEVVLALCKYD 660 (1089)
Q Consensus 582 ~Y~~~li~~Ll~~~l~h~D~~iR~laa~aL~~L~~~~~~~~~~~vlp~Ll~~l~~~-d~~~RHG~lLalaevl~~l~~~~ 660 (1089)
.|.-+++..+++ ..++.+..+|+.|..|+..+++..+.+....++|.++..+.+. .|..+-|++-.+..+....+
T Consensus 91 ~~~~~~~~~~~~-~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~--- 166 (986)
T 2iw3_A 91 PYIVQLVPAICT-NAGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAK--- 166 (986)
T ss_dssp HHHHTTHHHHHH-HTTCSSHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSH---
T ss_pred cchHHHHHHHHH-HhcCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhH---
Confidence 455566777776 6789999999999999999999877766789999999988644 79999999999999886432
Q ss_pred ccCChhHHHHHHhhhHHHHhhhhccCcchHHHHHHHHHHHHHhhh-cCCCCchhhHHHHHHHHHHhcCCCcHHHHHHHHH
Q 001381 661 YALPADKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISL-SFVSLPEKTKRSLLDTLNENLRHPNSQIQNAAVK 739 (1089)
Q Consensus 661 ~~~~~~~~~~i~~i~~~~~~~~l~r~~~gelir~a~~~lI~~ls~-~~lp~~~~~~~~~~~~L~~~L~~~~~~V~~aAa~ 739 (1089)
......+..+++-+.+. .+. -..|+-..|.-.+...|+. .+.+ +..++..|..|+.+|++ |. +
T Consensus 167 ----~~~~~~~~~~~p~~~~~-~~d-~k~~v~~~~~~~~~~~~~~~~n~d-----~~~~~~~~~~~~~~p~~-~~----~ 230 (986)
T 2iw3_A 167 ----DQVALRMPELIPVLSET-MWD-TKKEVKAAATAAMTKATETVDNKD-----IERFIPSLIQCIADPTE-VP----E 230 (986)
T ss_dssp ----HHHHHHHHHHHHHHHHH-TTC-SSHHHHHHHHHHHHHHGGGCCCTT-----TGGGHHHHHHHHHCTTH-HH----H
T ss_pred ----HHHHHhccchhcchHhh-ccc-CcHHHHHHHHHHHHHHHhcCCCcc-----hhhhHHHHHHHhcChhh-hH----H
Confidence 33444556666665532 222 2356666665555555543 2222 23445557778888844 44 5
Q ss_pred HHHHHHHHhhhccCcc-hhhhhHHHHHHHhCCCChhhhhhHHHHhhccchHhh-----hhhHHHHHHHHhhhccccCCCC
Q 001381 740 ALKPFVQTYMVAADSG-VVGGISLKYMEQLTDPNPAIRRGSALALGVLPYELL-----ANSWRDVLLKLCSCCLIEENPE 813 (1089)
Q Consensus 740 Al~~l~~~y~~~~~~~-~~~~~v~~~~~~L~s~~~~~r~G~a~aLG~lp~~~~-----~~~~~~i~~~L~~~~~~~~~~~ 813 (1089)
++..|....|...-.. ...-+++-+.++|+....+..|-.+.....+.+.+- .+.+.+++..|.+.. .+
T Consensus 231 ~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~-----~~ 305 (986)
T 2iw3_A 231 TVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNF-----AT 305 (986)
T ss_dssp HHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHT-----TT
T ss_pred HHHHhhcCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHh-----hc
Confidence 6666766554432111 235677788888875555555656666566654432 233444555555443 26
Q ss_pred CCCHHHHHHHHHHHHHHHhhhc
Q 001381 814 DRDTEARVNAVRGLVSVCETLT 835 (1089)
Q Consensus 814 ~~d~e~R~~al~sL~~i~~~~g 835 (1089)
..|+|.|.-|-+|+..+..--+
T Consensus 306 ~~~pe~r~~~~~a~~~l~~~~~ 327 (986)
T 2iw3_A 306 IADPEAREVTLRALKTLRRVGN 327 (986)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHHHhhc
Confidence 7799999999999987754433
No 79
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=95.16 E-value=3.1 Score=48.63 Aligned_cols=235 Identities=12% Similarity=0.081 Sum_probs=126.7
Q ss_pred HHHHHhhhcchHHHHHHHHhCccCCCCHHHHHHHHHHHHHHHccCchhhHHHHHHHhccccCCCChhhHHHHHHHHHHHH
Q 001381 574 AVFIAQYEGYLYPFVDELLYNKICHWDKVLRELAAEALSALVKYDPEYFANFILEKLTPFTLSTDLCTRHGATLAAGEVV 653 (1089)
Q Consensus 574 a~~va~~~~Y~~~li~~Ll~~~l~h~D~~iR~laa~aL~~L~~~~~~~~~~~vlp~Ll~~l~~~d~~~RHG~lLalaevl 653 (1089)
..+...||+..+.-|+.+++ ...+.|..||.-|.+.|-.+|+. ++ ...+...|.+.+++.|...++-+--+|-+++
T Consensus 53 ~kffk~FP~l~~~Ai~a~lD-LcEDed~~IR~qaik~Lp~~ck~--~~-i~kiaDvL~QlLqtdd~~E~~~V~~sL~sll 128 (507)
T 3u0r_A 53 PKFFKHFPELADSAINAQLD-LCEDEDVSIRRQAIKELPQFATG--EN-LPRVADILTQLLQTDDSAEFNLVNNALLSIF 128 (507)
T ss_dssp HHHGGGCGGGHHHHHHHHHH-HHTCSSHHHHHHHHHHGGGGCCT--TC-HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHhhChhhHHHHHHHHHH-HHhcccHHHHHHHHHhhHHHhhh--hh-hhhHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 33445678888899999997 67799999999999999999986 33 5556677777777887766665555666665
Q ss_pred HHHhcccccCChhHHHHHHhhhHHHHhhhhccCcchHHHHHHHHHHHHHhhhcCCC---CchhhHHHHHHHHHHhcCCCc
Q 001381 654 LALCKYDYALPADKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVS---LPEKTKRSLLDTLNENLRHPN 730 (1089)
Q Consensus 654 ~~l~~~~~~~~~~~~~~i~~i~~~~~~~~l~r~~~gelir~a~~~lI~~ls~~~lp---~~~~~~~~~~~~L~~~L~~~~ 730 (1089)
.. +....+..++.++.. |.|.+|+-+..+|..--. .++ +..++...+..-+...|.+-.
T Consensus 129 k~----------Dpk~tl~~lf~~i~~-------~~e~~Rer~lkFi~~kl~-~l~~~~l~~E~E~~i~~~ikK~L~DVT 190 (507)
T 3u0r_A 129 KM----------DAKGTLGGLFSQILQ-------GEDIVRERAIKFLSTKLK-TLPDEVLTKEVEELILTESKKVLEDVT 190 (507)
T ss_dssp HH----------CHHHHHHHHHHHHHH-------SCHHHHHHHHHHHHHHGG-GSCTTTSCHHHHHHHHHHHHHHTTSCC
T ss_pred hc----------ChHHHHHHHHHHHcc-------cchHHHHHHHHHHHHHHh-hcchhhccHHHHHHHHHHHHHHhcccc
Confidence 42 112234455556553 358899988888864211 111 123444455555555553333
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCcchhhhhHHHHHHHhC-------CCChhhhhhHHHHhhccchHhhhhhHHHHHHHHh
Q 001381 731 SQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLT-------DPNPAIRRGSALALGVLPYELLANSWRDVLLKLC 803 (1089)
Q Consensus 731 ~~V~~aAa~Al~~l~~~y~~~~~~~~~~~~v~~~~~~L~-------s~~~~~r~G~a~aLG~lp~~~~~~~~~~i~~~L~ 803 (1089)
.+--....+ +...+-.........++++-+.++.. ++.....|=..-+--++|.+.....-.+++..++
T Consensus 191 ~~EF~L~m~----lL~~lkl~~t~~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~~v~StkFv~y~~ 266 (507)
T 3u0r_A 191 GEEFVLFMK----ILSGLKSLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTYFC 266 (507)
T ss_dssp HHHHHHHHH----HHHTSGGGSSHHHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCBTTBCCHHHHHHHH
T ss_pred HHHHHHHHH----HHHhcccccCchHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHH
Confidence 221111111 11111111111122444444444321 1111122211222223454443333334555555
Q ss_pred hhccccCCCCCCCH----HHHHHHHHHHHHHHhhhc
Q 001381 804 SCCLIEENPEDRDT----EARVNAVRGLVSVCETLT 835 (1089)
Q Consensus 804 ~~~~~~~~~~~~d~----e~R~~al~sL~~i~~~~g 835 (1089)
..+.+... ....+ +.+-..++.++.++...|
T Consensus 267 ~kIlP~l~-~L~e~~~~~~~kL~LLK~lAE~s~~~~ 301 (507)
T 3u0r_A 267 EQVLPNLG-TLTTPVEGLDIQLEVLKLLAEMSSFCG 301 (507)
T ss_dssp HHTGGGTT-CCCCC--CCCHHHHHHHHHHHHHTTCC
T ss_pred Hhhccchh-hccccccchHHHHHHHHHHHHHccCCC
Confidence 55544322 11111 378899999999987655
No 80
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=95.01 E-value=0.8 Score=49.89 Aligned_cols=106 Identities=11% Similarity=0.111 Sum_probs=78.2
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCcchhhhhHHHHHHHhCCCChhhhhhHHHHhhccchHh-hhhh
Q 001381 716 RSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLTDPNPAIRRGSALALGVLPYEL-LANS 794 (1089)
Q Consensus 716 ~~~~~~L~~~L~~~~~~V~~aAa~Al~~l~~~y~~~~~~~~~~~~v~~~~~~L~s~~~~~r~G~a~aLG~lp~~~-~~~~ 794 (1089)
..++..|.+-+-++.+.||.++.+.+..+...|.. ..+++.+++++++.|.-+|.|....++.+-... ..+
T Consensus 131 ~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~-------~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~- 202 (266)
T 2of3_A 131 SAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP-------LKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISP- 202 (266)
T ss_dssp HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGG-
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCc-
Confidence 34455566667888899999999999888776521 568888889999889989999888888774322 111
Q ss_pred HHHHH---HHHhhhccccCCCCCCCHHHHHHHHHHHHHHHhhhcc
Q 001381 795 WRDVL---LKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQ 836 (1089)
Q Consensus 795 ~~~i~---~~L~~~~~~~~~~~~~d~e~R~~al~sL~~i~~~~g~ 836 (1089)
.+.+ ..+..++ ++.|.+.|.+|+.++..++..+|.
T Consensus 203 -~~~l~~~~~ia~ll------~D~d~~VR~aAl~~lve~y~~~Gd 240 (266)
T 2of3_A 203 -LKSLSVEKTVAPFV------GDKDVNVRNAAINVLVACFKFEGD 240 (266)
T ss_dssp -GGGGCHHHHHGGGG------GCSSHHHHHHHHHHHHHHHHHHTT
T ss_pred -cccccchHHHHHHH------cCCCHHHHHHHHHHHHHHHHHhhH
Confidence 2234 5555554 568999999999999999887774
No 81
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=94.54 E-value=4.2 Score=49.17 Aligned_cols=341 Identities=11% Similarity=0.052 Sum_probs=171.2
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhCcch-----hhhHHHHHHhhcCCCCCCcchHHHHHHHHHHHhcCCCCC
Q 001381 384 EIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSL-----SEEVFSSVLELFSPGEGDGSWHGGCLALAELARRGLLLP 458 (1089)
Q Consensus 384 ~iI~~ll~~L~d~dt~vR~saAK~l~rI~~~L~~~~-----a~~vi~~il~~l~~~~~~~~wHg~~LaLael~~~~ll~p 458 (1089)
..|..|+.-|.+.+..+|..||.+|..|+..=..+. ..-.|+.++++|....+...-.-++-+|..|+..--.-.
T Consensus 90 G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~ 169 (584)
T 3l6x_A 90 KGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKM 169 (584)
T ss_dssp THHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHH
T ss_pred CCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhH
Confidence 468899999999999999999999999986312222 224688888888653222222335556667765211000
Q ss_pred CcccchHHHHHHhhhhhcccc-----------ccCCChhhhhhhhHHHHHhhhccCc--cchhH---HHHHHHHHHHHHH
Q 001381 459 SSLPKVVPVIVKALHYDIRRG-----------SHSVGSHVRDAAAYVCWAFGRAYCH--TDMRN---ILEQIAPHLLTVA 522 (1089)
Q Consensus 459 ~~l~~il~~i~~~L~f~~r~~-----------~~svG~~VRDAacfi~WslaR~~~~--~~l~~---~~~~l~~~Ll~~a 522 (1089)
......+|.+.+-+.+.. .| .++-=..|+--|+-+++.++..... ..+.. .++. ...++-.+
T Consensus 170 ~I~~~alp~Lv~LL~~p~-sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~-LV~~L~~~ 247 (584)
T 3l6x_A 170 EIVDHALHALTDEVIIPH-SGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDA-LIFIVQAE 247 (584)
T ss_dssp HHHHHTHHHHHHHTHHHH-HCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHH-HHHHHHHH
T ss_pred HHHhccHHHHHHHHhccc-ccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHH-HHHHHHHh
Confidence 012335666665443211 11 0111135666677677777654321 11111 1111 12222222
Q ss_pred --hcCCCchhhHHHHHHHHHHhccc-CCCCCCccceecccccchhhhHHHHHHHHHHHH---hhhc-chHHHHHHHHhCc
Q 001381 523 --CYDREVNCRRAAAAAFQENVGRQ-GNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIA---QYEG-YLYPFVDELLYNK 595 (1089)
Q Consensus 523 --lfD~e~~iRRaAsAAlQE~vGR~-g~~p~GI~il~~~d~~~v~~r~~a~~~va~~va---~~~~-Y~~~li~~Ll~~~ 595 (1089)
-.+++..+.+-|..||--+-.+. ...|+--.++... .. ...++.+. +.+. +....+..|+. .
T Consensus 248 ~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~-----~~-----~~~~~~~~~~~Gve~L~~~~~v~~Ll~-L 316 (584)
T 3l6x_A 248 IGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAA-----PN-----VANNTGTSPARGYELLFQPEVVRIYIS-L 316 (584)
T ss_dssp HHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC------------------------CCCCGGGGGGSHHHHHHHHH-H
T ss_pred hcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhc-----cc-----ccccccccCchhHHHHhcccHHHHHHH-H
Confidence 24455566676777765544332 1111100000000 00 00111111 1111 22334444443 2
Q ss_pred c-CCCCHHHHHHHHHHHHHHHccCc---hhh---H--HHHHHHhccccCCCChhhHHHHHHHHHHHHHHHhcccccCChh
Q 001381 596 I-CHWDKVLRELAAEALSALVKYDP---EYF---A--NFILEKLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPAD 666 (1089)
Q Consensus 596 l-~h~D~~iR~laa~aL~~L~~~~~---~~~---~--~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~l~~~~~~~~~~ 666 (1089)
+ .+.+..+++-|+.||.+|+.... ..+ . ...+|.|.+.+.+.+..++.-++-+|..+...- ....
T Consensus 317 L~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~------~~~~ 390 (584)
T 3l6x_A 317 LKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDA------RNKE 390 (584)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTC------SCHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCCh------hHHH
Confidence 3 25789999999999999986442 222 1 356899999998888888877777777765321 1122
Q ss_pred HHHHHHhhhHHHHhhhhccCc-c-----hHHHHHHHHHHHHHhhhcCCCCchhhH-HHHHHHHHHhcCCC--cHHHHHHH
Q 001381 667 KQKIVAGIVPGIEKARLYRGK-G-----GEIMRSAVSRFIECISLSFVSLPEKTK-RSLLDTLNENLRHP--NSQIQNAA 737 (1089)
Q Consensus 667 ~~~~i~~i~~~~~~~~l~r~~-~-----gelir~a~~~lI~~ls~~~lp~~~~~~-~~~~~~L~~~L~~~--~~~V~~aA 737 (1089)
.+. .+.++.+.. -+..+. . .+-+..++|..+.++..........+. ..-+..|-..+++. .+.++.+|
T Consensus 391 ~I~--~g~ip~LV~-LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~A 467 (584)
T 3l6x_A 391 LIG--KHAIPNLVK-NLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAA 467 (584)
T ss_dssp HHH--HHHHHHHHH-TSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHH
T ss_pred HHH--hCCHHHHHH-HhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHH
Confidence 221 122333321 111221 0 245667888888776532211001111 11223334444553 88899999
Q ss_pred HHHHHHHHH
Q 001381 738 VKALKPFVQ 746 (1089)
Q Consensus 738 a~Al~~l~~ 746 (1089)
+.++..+..
T Consensus 468 a~vL~nl~~ 476 (584)
T 3l6x_A 468 ALVLQTIWG 476 (584)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHc
Confidence 888877653
No 82
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=94.52 E-value=0.93 Score=51.35 Aligned_cols=206 Identities=11% Similarity=0.037 Sum_probs=126.2
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhCcchh-----hhHHHHHHhhcCCCCCCcchHHHHHHHHHHHhcCC-C
Q 001381 383 EEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSLS-----EEVFSSVLELFSPGEGDGSWHGGCLALAELARRGL-L 456 (1089)
Q Consensus 383 E~iI~~ll~~L~d~dt~vR~saAK~l~rI~~~L~~~~a-----~~vi~~il~~l~~~~~~~~wHg~~LaLael~~~~l-l 456 (1089)
..+|+.|+.-|.+.+..+|..|+-+|+.|+..-..+.. ...|+.+++.+....++....-++-+|..|+...- .
T Consensus 126 ~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~n 205 (354)
T 3nmw_A 126 KGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTEN 205 (354)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred CCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhh
Confidence 45799999999999999999999999999864112221 24677888865322222223334456666654210 0
Q ss_pred CCCc--ccchHHHHHHhhhhhccccccCCChhhhhhhhHHHHHhhhc--cCccchhHHHHHHHHHHHHHHhcCCCchhhH
Q 001381 457 LPSS--LPKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRA--YCHTDMRNILEQIAPHLLTVACYDREVNCRR 532 (1089)
Q Consensus 457 ~p~~--l~~il~~i~~~L~f~~r~~~~svG~~VRDAacfi~WslaR~--~~~~~l~~~~~~l~~~Ll~~alfD~e~~iRR 532 (1089)
-+.. -...+|.+.+-|...... --..|+..||-++|.++.. -+++.-..+.+.=+...++.-+-+.+..+++
T Consensus 206 k~~i~~~~Gai~~Lv~lL~~~~~~----~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~ 281 (354)
T 3nmw_A 206 KADICAVDGALAFLVGTLTYRSQT----NTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVS 281 (354)
T ss_dssp HHHHHHSTTHHHHHHHHTTCCCSS----SCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHH
T ss_pred hHHHHHhcCcHHHHHHHhccCCCc----ccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHH
Confidence 0011 134678777777432210 0014888889999999862 1222222223322344456777788889999
Q ss_pred HHHHHHHHHhcccCCCCCCccceecccccchhhhHHHHHHHHHHHHhhhcchHHHHHHHHhCccCCCCHHHHHHHHHHHH
Q 001381 533 AAAAAFQENVGRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNKICHWDKVLRELAAEALS 612 (1089)
Q Consensus 533 aAsAAlQE~vGR~g~~p~GI~il~~~d~~~v~~r~~a~~~va~~va~~~~Y~~~li~~Ll~~~l~h~D~~iR~laa~aL~ 612 (1089)
.|..|+..+..+. .+....+.+. ..++.|++ .+.+.|..+|+-|+.||.
T Consensus 282 ~A~~aL~nLa~~~-------------------------~~~~~~i~~~-----G~i~~Lv~-LL~s~~~~i~~~A~~aL~ 330 (354)
T 3nmw_A 282 NACGTLWNLSARN-------------------------PKDQEALWDM-----GAVSMLKN-LIHSKHKMIAMGSAAALR 330 (354)
T ss_dssp HHHHHHHHHTSSC-------------------------HHHHHHHHHT-----THHHHHHT-TTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-------------------------HHHHHHHHHC-----CCHHHHHH-HHhCCCHHHHHHHHHHHH
Confidence 9999988775321 0111122222 24566664 667889999999999999
Q ss_pred HHHccCchhhH
Q 001381 613 ALVKYDPEYFA 623 (1089)
Q Consensus 613 ~L~~~~~~~~~ 623 (1089)
+|+...|....
T Consensus 331 nL~~~~~~~~~ 341 (354)
T 3nmw_A 331 NLMANRPAKYK 341 (354)
T ss_dssp HHHTTCCGGGC
T ss_pred HHHcCCHHHHh
Confidence 99998876543
No 83
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=94.26 E-value=1.4 Score=51.80 Aligned_cols=204 Identities=11% Similarity=0.030 Sum_probs=125.5
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhCcchh-----hhHHHHHHhhcCCCCCCcchHHHHHHHHHHHhcC-CC
Q 001381 383 EEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSLS-----EEVFSSVLELFSPGEGDGSWHGGCLALAELARRG-LL 456 (1089)
Q Consensus 383 E~iI~~ll~~L~d~dt~vR~saAK~l~rI~~~L~~~~a-----~~vi~~il~~l~~~~~~~~wHg~~LaLael~~~~-ll 456 (1089)
..+|+.|+.-|.+.+..+|..|+-+|+.|+..-..+.. ...|+.+++++....++...--++-+|..|+... -.
T Consensus 242 ~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~n 321 (458)
T 3nmz_A 242 KGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTEN 321 (458)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHH
T ss_pred CCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHH
Confidence 45799999999999999999999999999764122221 2467788886543323232333445666665521 00
Q ss_pred CCCc--ccchHHHHHHhhhhhccccccCCChhhhhhhhHHHHHhhhc--cCccchhHHHHHHHHHHHHHHhcCCCchhhH
Q 001381 457 LPSS--LPKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRA--YCHTDMRNILEQIAPHLLTVACYDREVNCRR 532 (1089)
Q Consensus 457 ~p~~--l~~il~~i~~~L~f~~r~~~~svG~~VRDAacfi~WslaR~--~~~~~l~~~~~~l~~~Ll~~alfD~e~~iRR 532 (1089)
-+.. -...+|.+.+-|..... +-.-.|+..||-++|.++.. -+++.-..+.+.=+...++..+-+.+..+++
T Consensus 322 k~~I~~~~Gal~~Lv~LL~~~~~----~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~ 397 (458)
T 3nmz_A 322 KADICAVDGALAFLVGTLTYRSQ----TNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVS 397 (458)
T ss_dssp HHHHHHSTTHHHHHHHHTTCCCS----SSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHH
T ss_pred HHHHHHhcCcHHHHHHHhcCCCC----cchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHH
Confidence 0011 13467777777643211 00014888889999999862 2222222233332344556777788889999
Q ss_pred HHHHHHHHHhcccCCCCCCccceecccccchhhhHHHHHHHHHHHHhhhcchHHHHHHHHhCccCCCCHHHHHHHHHHHH
Q 001381 533 AAAAAFQENVGRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNKICHWDKVLRELAAEALS 612 (1089)
Q Consensus 533 aAsAAlQE~vGR~g~~p~GI~il~~~d~~~v~~r~~a~~~va~~va~~~~Y~~~li~~Ll~~~l~h~D~~iR~laa~aL~ 612 (1089)
.|..|+..+..+. .+....+.+. ..++.|++ .+.+.|..+|+-|+.||.
T Consensus 398 ~A~~aL~nLa~~~-------------------------~~~~~~i~~~-----G~I~~Lv~-LL~s~~~~v~~~Aa~AL~ 446 (458)
T 3nmz_A 398 NACGTLWNLSARN-------------------------PKDQEALWDM-----GAVSMLKN-LIHSKHKMIAMGSAAALR 446 (458)
T ss_dssp HHHHHHHHHHSSC-------------------------HHHHHHHHHH-----THHHHHHT-TTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC-------------------------HHHHHHHHHC-----CCHHHHHH-HHhCCCHHHHHHHHHHHH
Confidence 9999987765321 0111122221 24566664 567889999999999999
Q ss_pred HHHccCchh
Q 001381 613 ALVKYDPEY 621 (1089)
Q Consensus 613 ~L~~~~~~~ 621 (1089)
+|+...|..
T Consensus 447 nL~~~~p~k 455 (458)
T 3nmz_A 447 NLMANRPAK 455 (458)
T ss_dssp HHHTCCSCC
T ss_pred HHHcCCHhh
Confidence 999887754
No 84
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=94.08 E-value=0.14 Score=58.22 Aligned_cols=212 Identities=12% Similarity=0.032 Sum_probs=87.1
Q ss_pred HHHHHHhCccCCCCHHHHHHHHHHHHHHHccCchhhHHHHHHHhccccCCCChhhHHHHHHHHHHHHHHHhcccccCChh
Q 001381 587 FVDELLYNKICHWDKVLRELAAEALSALVKYDPEYFANFILEKLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPAD 666 (1089)
Q Consensus 587 li~~Ll~~~l~h~D~~iR~laa~aL~~L~~~~~~~~~~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~l~~~~~~~~~~ 666 (1089)
.++.|.+ -+.|.++.+|-+|-++|+.+... .+.+.+.+.+.+.+.+.+..+|--++++..++... .++
T Consensus 105 v~Nsl~k-Dl~~~N~~iR~lALRtL~~I~~~---~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~--------~pe 172 (355)
T 3tjz_B 105 VTSSLTK-DMTGKEDSYRGPAVRALCQITDS---TMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKC--------SFD 172 (355)
T ss_dssp GHHHHHH-HHHSSCHHHHHHHHHHHHHHCCT---TTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTT--------CHH
T ss_pred HHHHHHh-hcCCCcHhHHHHHHHHHhcCCCH---HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcc--------CHH
Confidence 4555554 46677777777777777766432 25556666666677777777777777776665421 344
Q ss_pred HHHHHHhhhHHHHhhhhccCcchHHHHHHHHHHHHHhhhcCCCCchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 001381 667 KQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLPEKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQ 746 (1089)
Q Consensus 667 ~~~~i~~i~~~~~~~~l~r~~~gelir~a~~~lI~~ls~~~lp~~~~~~~~~~~~L~~~L~~~~~~V~~aAa~Al~~l~~ 746 (1089)
.+++..+-+..+. ..+.+-.+..|+..+. .+.... ...+......+..+ .-.++..|......+..
T Consensus 173 ~v~~~~~~l~~ll-----~d~n~~V~~~Al~lL~-ei~~~d----~~a~~kLv~~l~~~-~l~~~~~q~~llr~l~~--- 238 (355)
T 3tjz_B 173 VVKRWVNEAQEAA-----SSDNIMVQYHALGLLY-HVRKND----RLAVSKMISKFTRH-GLKSPFAYCMMIRVASR--- 238 (355)
T ss_dssp HHHTTHHHHHHHT-----TCSSHHHHHHHHHHHH-HHHTTC----HHHHHHHHHHHHSS-CCSCHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHh-----cCCCccHHHHHHHHHH-HHHhhc----hHHHHHHHHHHhcC-CCcChHHHHHHHHHHHH---
Confidence 4433222222221 2222333433333333 232110 11222222223221 11123333222222211
Q ss_pred HhhhccCcchhhhhHHHHHHHhCCCChhhhhhHHHHhhccchHhhhhhHHHHHHHHhhhccccCCCCCCCHHHHHHHHHH
Q 001381 747 TYMVAADSGVVGGISLKYMEQLTDPNPAIRRGSALALGVLPYELLANSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRG 826 (1089)
Q Consensus 747 ~y~~~~~~~~~~~~v~~~~~~L~s~~~~~r~G~a~aLG~lp~~~~~~~~~~i~~~L~~~~~~~~~~~~~d~e~R~~al~s 826 (1089)
|...++.+....+++.+...|++.++++--.++.++-.++..- .......+..|...+ ...|.+.|-.|++.
T Consensus 239 -~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~-~~~~~~a~~~L~~fL------ss~d~niryvaLr~ 310 (355)
T 3tjz_B 239 -QLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCS-AKELAPAVSVLQLFC------SSPKAALRYAAVRT 310 (355)
T ss_dssp -C-----------------CCCCCSSHHHHHHHHHHHTC------------CCCTHHHHH------HSSSSSSHHHHHHC
T ss_pred -hccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHHH------cCCCchHHHHHHHH
Confidence 2111101122344444555556777777777777777765421 111111111111111 23456788888888
Q ss_pred HHHHHh
Q 001381 827 LVSVCE 832 (1089)
Q Consensus 827 L~~i~~ 832 (1089)
|..+..
T Consensus 311 L~~l~~ 316 (355)
T 3tjz_B 311 LNKVAM 316 (355)
T ss_dssp C-----
T ss_pred HHHHHH
Confidence 887664
No 85
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=93.75 E-value=0.13 Score=56.90 Aligned_cols=150 Identities=13% Similarity=0.109 Sum_probs=101.3
Q ss_pred HHHHHHh-hcCCCChhHHHHHHHHHHHHHhhhCc--c-h-hhhHHHHHHhhcCCCCCCcchHHHHHHHHHHHhcCCCCCC
Q 001381 385 IIEILLS-GLRDTDTVVRWSAAKGIGRITSCLTS--S-L-SEEVFSSVLELFSPGEGDGSWHGGCLALAELARRGLLLPS 459 (1089)
Q Consensus 385 iI~~ll~-~L~d~dt~vR~saAK~l~rI~~~L~~--~-~-a~~vi~~il~~l~~~~~~~~wHg~~LaLael~~~~ll~p~ 459 (1089)
.+..|+. .|.++++.||..||..||.|+.-=|. + + ....++.++.++++..+....-.++-||+-+++..-..+.
T Consensus 82 ~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~ 161 (296)
T 1xqr_A 82 GMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLL 161 (296)
T ss_dssp HHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHH
Confidence 4567777 88999999999999999999864321 1 1 1347788888886432323334588899998875421011
Q ss_pred cc--cchHHHHHHhhhhhccccccCCChhhhhhhhHHHHHhhhccCccchhHHHHHHHHHHHHHHhcCCCchhhHHHHHH
Q 001381 460 SL--PKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAAAAA 537 (1089)
Q Consensus 460 ~l--~~il~~i~~~L~f~~r~~~~svG~~VRDAacfi~WslaR~~~~~~l~~~~~~l~~~Ll~~alfD~e~~iRRaAsAA 537 (1089)
.+ ...+|.+.+.|.- -...||=.||+++..++.. +++....+++.=+...|+.-+-+++..+|..|..|
T Consensus 162 ~~~~~ggi~~L~~lL~~--------~d~~v~~~A~~aLs~L~~~-~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~a 232 (296)
T 1xqr_A 162 QFLRLDGFSVLMRAMQQ--------QVQKLKVKSAFLLQNLLVG-HPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGA 232 (296)
T ss_dssp HHHHTTHHHHHHHHHHS--------SCHHHHHHHHHHHHHHHHH-CGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcC--------CCHHHHHHHHHHHHHHHhC-ChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHH
Confidence 11 2467777766632 1356888888888888877 44334444454455556677788899999999999
Q ss_pred HHHHhc
Q 001381 538 FQENVG 543 (1089)
Q Consensus 538 lQE~vG 543 (1089)
+..++.
T Consensus 233 L~~l~~ 238 (296)
T 1xqr_A 233 LCSLVT 238 (296)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 988764
No 86
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=93.55 E-value=0.07 Score=51.09 Aligned_cols=85 Identities=15% Similarity=0.054 Sum_probs=61.2
Q ss_pred HHHHHhcCCCchhhHHHHHHHHHHhcccCCCCCCccceecccccchhhhHHHHHHHHHHHHhhhcchHHHHHHHHhCccC
Q 001381 518 LLTVACYDREVNCRRAAAAAFQENVGRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNKIC 597 (1089)
Q Consensus 518 Ll~~alfD~e~~iRRaAsAAlQE~vGR~g~~p~GI~il~~~d~~~v~~r~~a~~~va~~va~~~~Y~~~li~~Ll~~~l~ 597 (1089)
.|...+-|++..+|+.|..|| |+.|.- ...+.+++. +.
T Consensus 46 ~L~~~L~d~~~~vR~~A~~aL----~~~~~~---------------------------------~a~~~L~~~-----L~ 83 (131)
T 1te4_A 46 PLLESLSNEDWRIRGAAAWII----GNFQDE---------------------------------RAVEPLIKL-----LE 83 (131)
T ss_dssp HHHHGGGCSCHHHHHHHHHHH----GGGCSH---------------------------------HHHHHHHHH-----HH
T ss_pred HHHHHHcCCCHHHHHHHHHHH----HhcCCH---------------------------------HHHHHHHHH-----Hc
Confidence 345777899999999998885 666531 012233332 34
Q ss_pred CCCHHHHHHHHHHHHHHHccCchhhHHHHHHHhccccCCCChhhHHHHHHHHHH
Q 001381 598 HWDKVLRELAAEALSALVKYDPEYFANFILEKLTPFTLSTDLCTRHGATLAAGE 651 (1089)
Q Consensus 598 h~D~~iR~laa~aL~~L~~~~~~~~~~~vlp~Ll~~l~~~d~~~RHG~lLalae 651 (1089)
+.|..+|..|+.+|+++.. ...+|.|.+.+.+.+..+|..++.+|++
T Consensus 84 d~~~~VR~~A~~aL~~~~~-------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 84 DDSGFVRSGAARSLEQIGG-------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp HCCTHHHHHHHHHHHHHCS-------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred CCCHHHHHHHHHHHHHhCc-------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 7899999999999999863 2356777777788888999988877754
No 87
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=93.31 E-value=0.46 Score=52.49 Aligned_cols=174 Identities=15% Similarity=0.083 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHHccCch--hh-HHHHHHHhcc-ccCCCChhhHHHHHHHHHHHHHHHhcccccCChhHHHHHH--hhh
Q 001381 602 VLRELAAEALSALVKYDPE--YF-ANFILEKLTP-FTLSTDLCTRHGATLAAGEVVLALCKYDYALPADKQKIVA--GIV 675 (1089)
Q Consensus 602 ~iR~laa~aL~~L~~~~~~--~~-~~~vlp~Ll~-~l~~~d~~~RHG~lLalaevl~~l~~~~~~~~~~~~~~i~--~i~ 675 (1089)
+-|..|...|..++..... .+ ..-.+|.+++ .+.+.+..+|..++.+++.+...- +.....+. +.+
T Consensus 55 e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n--------~~~~~~vv~~g~l 126 (296)
T 1xqr_A 55 QEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNV--------AAIQEQVLGLGAL 126 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTC--------HHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC--------HHHHHHHHHCCCH
Confidence 4555566666666542110 11 1124566666 666666677777777766665311 11111110 111
Q ss_pred HHHHhhhhccCcchHHHHHHHHHHHHHhhhcCCCCchhhH-HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCc
Q 001381 676 PGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLPEKTK-RSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADS 754 (1089)
Q Consensus 676 ~~~~~~~l~r~~~gelir~a~~~lI~~ls~~~lp~~~~~~-~~~~~~L~~~L~~~~~~V~~aAa~Al~~l~~~y~~~~~~ 754 (1089)
+.+.+ +.+.....-++..++..|.+++..+.|....+. ...+..|...|.+++..+|..|+.|+..+.... ....
T Consensus 127 ~~Ll~--LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~--~~~~ 202 (296)
T 1xqr_A 127 RKLLR--LLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGH--PEHK 202 (296)
T ss_dssp HHHHH--HHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--GGGH
T ss_pred HHHHH--HHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC--hHHH
Confidence 11110 111001234566666777776643322111121 123445666678899999999999998886541 1000
Q ss_pred c--hhhhhHHHHHHHhCCCChhhhhhHHHHhhccc
Q 001381 755 G--VVGGISLKYMEQLTDPNPAIRRGSALALGVLP 787 (1089)
Q Consensus 755 ~--~~~~~v~~~~~~L~s~~~~~r~G~a~aLG~lp 787 (1089)
+ .....++.+++.|++.++..+.-++.+|+.+-
T Consensus 203 ~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~ 237 (296)
T 1xqr_A 203 GTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLV 237 (296)
T ss_dssp HHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHH
Confidence 1 11567888899898888888887888877664
No 88
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=93.19 E-value=7.5 Score=40.07 Aligned_cols=215 Identities=17% Similarity=0.209 Sum_probs=132.4
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhCcchhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHHhcCCCCCCccc
Q 001381 383 EEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSLSEEVFSSVLELFSPGEGDGSWHGGCLALAELARRGLLLPSSLP 462 (1089)
Q Consensus 383 E~iI~~ll~~L~d~dt~vR~saAK~l~rI~~~L~~~~a~~vi~~il~~l~~~~~~~~wHg~~LaLael~~~~ll~p~~l~ 462 (1089)
+++++.++..|.|.-=.||=-|-.=+..|.+.. +++.+-++..++-++...+.-+.-..+.=++|-+++-+ |+.+.
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~-~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~---Pe~v~ 106 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTR-EDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEK---PELVK 106 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHC---HHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHh-HHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhC---HHHHH
Confidence 456667777776655455544444444444443 35556677777777766555444455667778888866 55555
Q ss_pred chHHHHHHhhhhhccccccCCChhhhhhhhHHHHHhhhccCccchhHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHh
Q 001381 463 KVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAAAAAFQENV 542 (1089)
Q Consensus 463 ~il~~i~~~L~f~~r~~~~svG~~VRDAacfi~WslaR~~~~~~l~~~~~~l~~~Ll~~alfD~e~~iRRaAsAAlQE~v 542 (1089)
.++|++ |...|.. -.++|=--.|++=-++|+|.. .+..++.++. .-+-+++ ++-|.+.=-| +
T Consensus 107 ~vVp~l-----fanyrig---d~kikIn~~yaLeeIaranP~-----l~~~v~rdi~-smltskd-~~Dkl~aLnF---i 168 (253)
T 2db0_A 107 SMIPVL-----FANYRIG---DEKTKINVSYALEEIAKANPM-----LMASIVRDFM-SMLSSKN-REDKLTALNF---I 168 (253)
T ss_dssp HHHHHH-----HHHSCCC---SHHHHHHHHHHHHHHHHHCHH-----HHHHHHHHHH-HHTSCSS-HHHHHHHHHH---H
T ss_pred hhHHHH-----HHHHhcC---CccceecHHHHHHHHHHhChH-----HHHHHHHHHH-HHhcCCC-hHHHHHHHHH---H
Confidence 666665 3332321 256777788999999999873 2334555543 3334666 4444322222 3
Q ss_pred cccCCCCCCccceecccccchhhhHHHHHHHHHHHHhhhcchHHHHHHHHhCccCCCCHHHHHHHHHHHHHHHccCchhh
Q 001381 543 GRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNKICHWDKVLRELAAEALSALVKYDPEYF 622 (1089)
Q Consensus 543 GR~g~~p~GI~il~~~d~~~v~~r~~a~~~va~~va~~~~Y~~~li~~Ll~~~l~h~D~~iR~laa~aL~~L~~~~~~~~ 622 (1089)
|-.|- +..+|..|.++.|+. .+.+-|.-+|--|-++|++++...|. +
T Consensus 169 ~alGe-------------------------------n~~~yv~PfLprL~a-LL~D~deiVRaSaVEtL~~lA~~npk-l 215 (253)
T 2db0_A 169 EAMGE-------------------------------NSFKYVNPFLPRIIN-LLHDGDEIVRASAVEALVHLATLNDK-L 215 (253)
T ss_dssp HTCCT-------------------------------TTHHHHGGGHHHHHG-GGGCSSHHHHHHHHHHHHHHHTSCHH-H
T ss_pred HHHhc-------------------------------cCccccCcchHHHHH-HHcCcchhhhHHHHHHHHHHHHcCHH-H
Confidence 33331 123577788888875 77799999999999999999999987 4
Q ss_pred HHHHHHHhccccCCCChhhHHHHHHHHHHHH
Q 001381 623 ANFILEKLTPFTLSTDLCTRHGATLAAGEVV 653 (1089)
Q Consensus 623 ~~~vlp~Ll~~l~~~d~~~RHG~lLalaevl 653 (1089)
.. ++...++.+.+..--..|-.--+++.++
T Consensus 216 Rk-ii~~kl~e~~D~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 216 RK-VVIKRLEELNDTSSLVNKTVKEGISRLL 245 (253)
T ss_dssp HH-HHHHHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 43 4444446666655555565666666654
No 89
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=93.17 E-value=0.64 Score=50.31 Aligned_cols=112 Identities=13% Similarity=0.061 Sum_probs=80.5
Q ss_pred HHHHHhcCCCchhhHHHHHHHHHHhcccCCCCCCccceecccccchhhhHHHHHHHHHHHHhhhcchHHHHHHHHhCccC
Q 001381 518 LLTVACYDREVNCRRAAAAAFQENVGRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNKIC 597 (1089)
Q Consensus 518 Ll~~alfD~e~~iRRaAsAAlQE~vGR~g~~p~GI~il~~~d~~~v~~r~~a~~~va~~va~~~~Y~~~li~~Ll~~~l~ 597 (1089)
++...+-|.+..+-..|..+++.++-..|.-. +.+. .+..+...+++.|+..+++
T Consensus 59 ~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~--------------~~~~-----------~~~~~~~~~l~~lveK~l~ 113 (278)
T 4ffb_C 59 LFAQYITDSNVVAQEQAIVALNSLIDAFASSS--------------LKNA-----------HNITLISTWTPLLVEKGLT 113 (278)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHHTTCC-----------------CCHH-----------HHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHHHhhhhh--------------cccc-----------hhHHHHHHHHHHHHHHHhc
Confidence 34567789999999999999999876654310 0000 1123456678888886789
Q ss_pred CCCHHHHHHHHHHHHHHHccCchhhHHHHHHHhccccCCCChhhHHHHHHHHHHHHHHH
Q 001381 598 HWDKVLRELAAEALSALVKYDPEYFANFILEKLTPFTLSTDLCTRHGATLAAGEVVLAL 656 (1089)
Q Consensus 598 h~D~~iR~laa~aL~~L~~~~~~~~~~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~l 656 (1089)
+....+|..|..++-.++.... ....+++.++..+.+.+..+|.+++..++.++..+
T Consensus 114 ~~k~~~~~~a~~~l~~~~~~~~--~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~f 170 (278)
T 4ffb_C 114 SSRATTKTQSMSCILSLCGLDT--SITQSVELVIPFFEKKLPKLIAAAANCVYELMAAF 170 (278)
T ss_dssp CCCHHHHHHHHHHHHHHHHTSS--SSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999988875432 12335677778888899999999998888887654
No 90
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=92.77 E-value=0.1 Score=49.84 Aligned_cols=85 Identities=25% Similarity=0.190 Sum_probs=63.2
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCcchhhhhHHHHHHHhCCCChhhhhhHHHHhhccchHhhhhhHHHHHH
Q 001381 721 TLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLTDPNPAIRRGSALALGVLPYELLANSWRDVLL 800 (1089)
Q Consensus 721 ~L~~~L~~~~~~V~~aAa~Al~~l~~~y~~~~~~~~~~~~v~~~~~~L~s~~~~~r~G~a~aLG~lp~~~~~~~~~~i~~ 800 (1089)
.|...|.+++..||..|+.++..+.. ...++.+++.+++.++.+|..++.+||.+... ..+.
T Consensus 46 ~L~~~L~d~~~~vR~~A~~aL~~~~~-----------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~~-------~a~~ 107 (131)
T 1te4_A 46 PLLESLSNEDWRIRGAAAWIIGNFQD-----------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGGE-------RVRA 107 (131)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHGGGCS-----------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCSH-------HHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhcCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH-------HHHH
Confidence 35566788999999999998865421 35677778888888999999999999988632 2345
Q ss_pred HHhhhccccCCCCCCCHHHHHHHHHHHHH
Q 001381 801 KLCSCCLIEENPEDRDTEARVNAVRGLVS 829 (1089)
Q Consensus 801 ~L~~~~~~~~~~~~~d~e~R~~al~sL~~ 829 (1089)
.|+... .+.+...|..|+.+|.+
T Consensus 108 ~L~~~l------~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 108 AMEKLA------ETGTGFARKVAVNYLET 130 (131)
T ss_dssp HHHHHT------TSCCTHHHHHHHHHGGG
T ss_pred HHHHHH------hCCCHHHHHHHHHHHHh
Confidence 555554 24567999999998864
No 91
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=92.70 E-value=4.1 Score=50.65 Aligned_cols=237 Identities=6% Similarity=-0.010 Sum_probs=129.5
Q ss_pred HHHHHHhCccCCCCHHHHHHHHHHHHHHHccCch--hhH-HHHHHHhccccCCCChh---hHHHHHHHHHHHHHHHhc-c
Q 001381 587 FVDELLYNKICHWDKVLRELAAEALSALVKYDPE--YFA-NFILEKLTPFTLSTDLC---TRHGATLAAGEVVLALCK-Y 659 (1089)
Q Consensus 587 li~~Ll~~~l~h~D~~iR~laa~aL~~L~~~~~~--~~~-~~vlp~Ll~~l~~~d~~---~RHG~lLalaevl~~l~~-~ 659 (1089)
.+..|+. .+.+.+..+|+.|+++|..|+..... .+. .-.+|.|++.+.+.... .|--++-||+.++..... .
T Consensus 458 vIp~Lv~-Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~ 536 (778)
T 3opb_A 458 LISFLKR-EMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGL 536 (778)
T ss_dssp HHHHHHH-HGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHH
T ss_pred CHHHHHH-HHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHH
Confidence 4555553 55678999999999999999854221 122 23566677666554332 576788888888743210 0
Q ss_pred cccCChhHHHHHHhhhHHHHhhhh------c-cCcchHH-HHHHHHHHHHHhhhcCCCC------chhhHH--HHHHHHH
Q 001381 660 DYALPADKQKIVAGIVPGIEKARL------Y-RGKGGEI-MRSAVSRFIECISLSFVSL------PEKTKR--SLLDTLN 723 (1089)
Q Consensus 660 ~~~~~~~~~~~i~~i~~~~~~~~l------~-r~~~gel-ir~a~~~lI~~ls~~~lp~------~~~~~~--~~~~~L~ 723 (1089)
.... ......|..++.-+....- + +...+.+ ..+|+..| .++|. .|- ...++. .....|.
T Consensus 537 ~f~~-~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~AL-TNLAs--~~~n~~E~~r~~Ii~~~ga~~~L~ 612 (778)
T 3opb_A 537 IFKK-YSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLAL-TNLAS--SETSDGEEVCKHIVSTKVYWSTIE 612 (778)
T ss_dssp HSSS-SCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHH-HHHHH--CCSHHHHHHHHHHHHSHHHHHHHH
T ss_pred HcCC-CccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHH-HHHhc--CCcccchHHHHHHHHhcCHHHHHH
Confidence 0000 0011222333322210000 0 0001112 33444443 34543 231 122333 3556677
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHHhhh---cc-Ccc--hhhhhHHHHHHHhCCCChhhhhhHHHHhhccchH---hhhh-
Q 001381 724 ENLRHPNSQIQNAAVKALKPFVQTYMV---AA-DSG--VVGGISLKYMEQLTDPNPAIRRGSALALGVLPYE---LLAN- 793 (1089)
Q Consensus 724 ~~L~~~~~~V~~aAa~Al~~l~~~y~~---~~-~~~--~~~~~v~~~~~~L~s~~~~~r~G~a~aLG~lp~~---~~~~- 793 (1089)
+.|.+.++.||.+|++++..+...-.. .. ..+ ...+-++.+++.+.+.+...|+.++-||+.++.. ....
T Consensus 613 ~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~l 692 (778)
T 3opb_A 613 NLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKEL 692 (778)
T ss_dssp HGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 778889999999999999988752110 00 000 0011266788888899999999999999988532 1111
Q ss_pred -hHHHHHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHh
Q 001381 794 -SWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCE 832 (1089)
Q Consensus 794 -~~~~i~~~L~~~~~~~~~~~~~d~e~R~~al~sL~~i~~ 832 (1089)
...+.++.|+..+.. ...+.+.|.+++..+..+..
T Consensus 693 l~~~~gi~~Ll~lL~~----~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 693 LTKKELIENAIQVFAD----QIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp TTCHHHHHHHHHHHHH----TTTCHHHHHHHHHHHHHHHT
T ss_pred HHccccHHHHHHHHhc----cCCCHHHHHHHHHHHHHHHH
Confidence 012334444444321 12578999999999998874
No 92
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=91.49 E-value=2.8 Score=47.47 Aligned_cols=190 Identities=15% Similarity=0.073 Sum_probs=109.2
Q ss_pred hhHHHHHhhhccCccchhHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHhcccCCCCCCccceecccccchhhhHHHH
Q 001381 491 AAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAAAAAFQENVGRQGNYPHGIDIVNTADYFSLSSRVYSY 570 (1089)
Q Consensus 491 acfi~WslaR~~~~~~l~~~~~~l~~~Ll~~alfD~e~~iRRaAsAAlQE~vGR~g~~p~GI~il~~~d~~~v~~r~~a~ 570 (1089)
-+|..|-..-... ++. + ++.+-+..-+-|++..+|-.|..+|.- ...
T Consensus 87 LvYLyl~~~~~~~-~e~---i--Lv~Nsl~kDl~~~N~~iR~lALRtL~~----I~~----------------------- 133 (355)
T 3tjz_B 87 MCYLTIKEMSCIA-EDV---I--IVTSSLTKDMTGKEDSYRGPAVRALCQ----ITD----------------------- 133 (355)
T ss_dssp HHHHHHHHHTTTS-SCG---G--GGHHHHHHHHHSSCHHHHHHHHHHHHH----HCC-----------------------
T ss_pred HHHHHHHHhCCCH-HHH---H--HHHHHHHhhcCCCcHhHHHHHHHHHhc----CCC-----------------------
Confidence 4677776544432 222 1 566677788889999999998888633 311
Q ss_pred HHHHHHHHhhhcchHHHHHHHHhCccCCCCHHHHHHHHHHHHHHHccCchhhHHHHHHHhccccCCCChhhHHHHHHHHH
Q 001381 571 LHVAVFIAQYEGYLYPFVDELLYNKICHWDKVLRELAAEALSALVKYDPEYFANFILEKLTPFTLSTDLCTRHGATLAAG 650 (1089)
Q Consensus 571 ~~va~~va~~~~Y~~~li~~Ll~~~l~h~D~~iR~laa~aL~~L~~~~~~~~~~~vlp~Ll~~l~~~d~~~RHG~lLala 650 (1089)
++..+.+...+-+ .+.|-++.+|+-|+-|..+|.+.+|+-+ ...++.+.+.+.+.+..+-..++.++.
T Consensus 134 ----------~~m~~~l~~~lk~-~L~d~~pyVRk~A~l~~~kL~~~~pe~v-~~~~~~l~~ll~d~n~~V~~~Al~lL~ 201 (355)
T 3tjz_B 134 ----------STMLQAIERYMKQ-AIVDKVPSVSSSALVSSLHLLKCSFDVV-KRWVNEAQEAASSDNIMVQYHALGLLY 201 (355)
T ss_dssp ----------TTTHHHHHHHHHH-HHTCSSHHHHHHHHHHHHHHTTTCHHHH-HTTHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHHhccCHHHH-HHHHHHHHHHhcCCCccHHHHHHHHHH
Confidence 1233445555443 7789999999999999999999999844 346666666666766555444555555
Q ss_pred HHHHHHhcccccCChhHHHHHHhhhHHHHhhhhccCcchHHHHHHHHHHHHHhhhcCCCCc-hhhHHHHHHHHHHhcCCC
Q 001381 651 EVVLALCKYDYALPADKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLP-EKTKRSLLDTLNENLRHP 729 (1089)
Q Consensus 651 evl~~l~~~~~~~~~~~~~~i~~i~~~~~~~~l~r~~~gelir~a~~~lI~~ls~~~lp~~-~~~~~~~~~~L~~~L~~~ 729 (1089)
++-.. +.. .+..+++.+.+. +...+ -+.|.+|..++. -.|-. ++....+.+.+..+|+|.
T Consensus 202 ei~~~--------d~~---a~~kLv~~l~~~----~l~~~---~~q~~llr~l~~-~~~~d~~~~~~~~~~~l~~~L~~~ 262 (355)
T 3tjz_B 202 HVRKN--------DRL---AVSKMISKFTRH----GLKSP---FAYCMMIRVASR-QLEDEDGSRDSPLFDFIESCLRNK 262 (355)
T ss_dssp HHHTT--------CHH---HHHHHHHHHHSS----CCSCH---HHHHHHHHHHTC-C-----------------CCCCCS
T ss_pred HHHhh--------chH---HHHHHHHHHhcC----CCcCh---HHHHHHHHHHHH-hccccchhhHHHHHHHHHHHHcCC
Confidence 55321 111 233445544321 11112 244666665442 12322 233467888899999999
Q ss_pred cHHHHHHHHHHHHHH
Q 001381 730 NSQIQNAAVKALKPF 744 (1089)
Q Consensus 730 ~~~V~~aAa~Al~~l 744 (1089)
++.|...|+.++-.+
T Consensus 263 ~~aVvyEa~k~I~~l 277 (355)
T 3tjz_B 263 HEMVVYEAASAIVNL 277 (355)
T ss_dssp SHHHHHHHHHHHTC-
T ss_pred ChHHHHHHHHHHHhc
Confidence 999999999888654
No 93
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=91.34 E-value=1.7 Score=49.19 Aligned_cols=182 Identities=15% Similarity=0.068 Sum_probs=106.9
Q ss_pred hHHHHHHhhhhhccccccCCChhhhhhhhHHHHHhhhccCccchhH-HHHHHHHHHHHHH-hcCCCchhhHHHHHHHHHH
Q 001381 464 VVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRN-ILEQIAPHLLTVA-CYDREVNCRRAAAAAFQEN 541 (1089)
Q Consensus 464 il~~i~~~L~f~~r~~~~svG~~VRDAacfi~WslaR~~~~~~l~~-~~~~l~~~Ll~~a-lfD~e~~iRRaAsAAlQE~ 541 (1089)
++|.+++-|.- -...|+-.||.+++.++..-++ ..+. +.+.=+...|+.. +-..+..+++.|..|+..+
T Consensus 128 aIp~LV~LL~s--------~~~~v~~~A~~aL~nLs~~~~~-~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nL 198 (354)
T 3nmw_A 128 CMRALVAQLKS--------ESEDLQQVIASVLRNLSWRADV-NSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNL 198 (354)
T ss_dssp HHHHHHHGGGC--------SCHHHHHHHHHHHHHHHTTCCH-HHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHCC--------CCHHHHHHHHHHHHHHhccCCH-HHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 46777666631 1256888899999999764111 1222 2222233333343 3345778999999998877
Q ss_pred hccc-CC------CCCCccc-eecccccc----hhhhHHH---HHHHHHHHHhhhcchHH-----HHHHHHhCccCCCCH
Q 001381 542 VGRQ-GN------YPHGIDI-VNTADYFS----LSSRVYS---YLHVAVFIAQYEGYLYP-----FVDELLYNKICHWDK 601 (1089)
Q Consensus 542 vGR~-g~------~p~GI~i-l~~~d~~~----v~~r~~a---~~~va~~va~~~~Y~~~-----li~~Ll~~~l~h~D~ 601 (1089)
.... ++ ...||.. +....+-. +..+.++ ...++..++..++++.. .++.|+. .+.+.+.
T Consensus 199 s~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~-lL~~~~~ 277 (354)
T 3nmw_A 199 SAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQ-HLKSHSL 277 (354)
T ss_dssp HTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHH-HTTCSCH
T ss_pred HccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHH-HHcCCCh
Confidence 6522 11 1223321 22221111 0112222 22233322233444443 4566665 6778999
Q ss_pred HHHHHHHHHHHHHHccCchhhH----HHHHHHhccccCCCChhhHHHHHHHHHHHHHH
Q 001381 602 VLRELAAEALSALVKYDPEYFA----NFILEKLTPFTLSTDLCTRHGATLAAGEVVLA 655 (1089)
Q Consensus 602 ~iR~laa~aL~~L~~~~~~~~~----~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~ 655 (1089)
.+++-|+.+|++|+..+++... .-.+|.|.+.+.+.+..+|..++.+|..+...
T Consensus 278 ~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~ 335 (354)
T 3nmw_A 278 TIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 335 (354)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 9999999999999976665332 23688888888888889999888888888753
No 94
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=91.06 E-value=48 Score=43.39 Aligned_cols=99 Identities=14% Similarity=0.134 Sum_probs=62.2
Q ss_pred hhHHHHHHHh---CCCChhhhhhHHHHhhccchHhh--hhhHHHHHHHHhhhccccCC--C-CC---CCHHHHHHHHHHH
Q 001381 759 GISLKYMEQL---TDPNPAIRRGSALALGVLPYELL--ANSWRDVLLKLCSCCLIEEN--P-ED---RDTEARVNAVRGL 827 (1089)
Q Consensus 759 ~~v~~~~~~L---~s~~~~~r~G~a~aLG~lp~~~~--~~~~~~i~~~L~~~~~~~~~--~-~~---~d~e~R~~al~sL 827 (1089)
.+...++..+ +..++..+.-....+|.+..... ...+..+++.|+..+..... . .. ...+.|+.|..+|
T Consensus 529 ~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al 608 (1204)
T 3a6p_A 529 NDGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSI 608 (1204)
T ss_dssp HHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHH
Confidence 3456666654 34578888888888887765543 23456666666655421100 0 00 2347899999999
Q ss_pred HHHHhhhccccccccccCCcchhhhhhhhHHHHHHHHHHhcccCC
Q 001381 828 VSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYS 872 (1089)
Q Consensus 828 ~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~L~DYT 872 (1089)
..++...+. ...+.++.+.+.+-..+..|+
T Consensus 609 ~~L~~~~~~---------------~L~p~~~~i~~~~~~~l~~~~ 638 (1204)
T 3a6p_A 609 IKMCRDYPQ---------------LVLPNFDMLYNHVKQLLSNEL 638 (1204)
T ss_dssp HHHHHHCHH---------------HHGGGHHHHHHHHHHHHHSTT
T ss_pred HHHHHHhhH---------------HHHHHHHHHHHHHHHHHhCcc
Confidence 998876532 233677888888888887776
No 95
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=90.96 E-value=3.1 Score=45.27 Aligned_cols=134 Identities=13% Similarity=0.065 Sum_probs=94.7
Q ss_pred cCCCcHHHHHHHHHHHHHHHHHhhhcc---CcchhhhhHHHHHHHhCCCChhhhhhHHHHhhccchHhhhhhHHHHHHHH
Q 001381 726 LRHPNSQIQNAAVKALKPFVQTYMVAA---DSGVVGGISLKYMEQLTDPNPAIRRGSALALGVLPYELLANSWRDVLLKL 802 (1089)
Q Consensus 726 L~~~~~~V~~aAa~Al~~l~~~y~~~~---~~~~~~~~v~~~~~~L~s~~~~~r~G~a~aLG~lp~~~~~~~~~~i~~~L 802 (1089)
+.+.+..|...+-+.+..++...-... .......+++.++..+.+.+...|...-.++-.+.... ....+++.+
T Consensus 96 ~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~---~~~~v~~~l 172 (266)
T 2of3_A 96 FFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVV---GPLKMTPML 172 (266)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHH---CHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHC---CHHHHHHHH
Confidence 457899999999999998877642211 11123678899999998888888887666654444321 123466667
Q ss_pred hhhccccCCCCCCCHHHHHHHHHHHHHHHhhhccccccccccCCcchhhhhhhhHHHHH---HHHHHhcccCCCCCCCCc
Q 001381 803 CSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVM---TSLFKALDDYSVDNRGDV 879 (1089)
Q Consensus 803 ~~~~~~~~~~~~~d~e~R~~al~sL~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~---~~Ll~~L~DYT~D~RGDV 879 (1089)
+.+++ .+..-+|..++..+..++.+.|..+ ...+ ..+...++|=.
T Consensus 173 ~~g~k------sKN~R~R~e~l~~l~~li~~~G~~~-------------------~~~l~~~~~ia~ll~D~d------- 220 (266)
T 2of3_A 173 LDALK------SKNARQRSECLLVIEYYITNAGISP-------------------LKSLSVEKTVAPFVGDKD------- 220 (266)
T ss_dssp HHGGG------CSCHHHHHHHHHHHHHHHHHHCSGG-------------------GGGGCHHHHHGGGGGCSS-------
T ss_pred HHHHc------cCCHHHHHHHHHHHHHHHHhcCCCc-------------------cccccchHHHHHHHcCCC-------
Confidence 77652 3568999999999999999988741 1134 77888898843
Q ss_pred chHHHHHHHHHHHHHH
Q 001381 880 GSWVREAAVDGLEICT 895 (1089)
Q Consensus 880 GSwVR~aa~~~l~~l~ 895 (1089)
+-||.+|++++..+.
T Consensus 221 -~~VR~aAl~~lve~y 235 (266)
T 2of3_A 221 -VNVRNAAINVLVACF 235 (266)
T ss_dssp -HHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHH
Confidence 349999999998765
No 96
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=89.76 E-value=13 Score=39.83 Aligned_cols=186 Identities=13% Similarity=0.052 Sum_probs=115.6
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCcch----hhhhHHHHHHHhCCCChhhhhhHHHHhhccchH--------
Q 001381 722 LNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGV----VGGISLKYMEQLTDPNPAIRRGSALALGVLPYE-------- 789 (1089)
Q Consensus 722 L~~~L~~~~~~V~~aAa~Al~~l~~~y~~~~~~~~----~~~~v~~~~~~L~s~~~~~r~G~a~aLG~lp~~-------- 789 (1089)
+++-|.|.+=..|..|.+.+..++...-....... ...+..-+-+.+.+.|..+......++..+-..
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 44557888888888888888777653211100000 123334455566788888877776666554221
Q ss_pred -hhhhhHHHHHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHhhhccccccccccCCcchhhhhhhhHHHHHHHHHHhc
Q 001381 790 -LLANSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKAL 868 (1089)
Q Consensus 790 -~~~~~~~~i~~~L~~~~~~~~~~~~~d~e~R~~al~sL~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~L 868 (1089)
........++..|+..+. .+....+|..|+.++..++...+ ....+++.++.++
T Consensus 94 ~~~~~~~~~~l~~lveK~l-----~~~k~~~~~~a~~~l~~~~~~~~--------------------~~~~~~e~l~~~l 148 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGL-----TSSRATTKTQSMSCILSLCGLDT--------------------SITQSVELVIPFF 148 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTS-----SCCCHHHHHHHHHHHHHHHHTSS--------------------SSHHHHHHHGGGG
T ss_pred chhHHHHHHHHHHHHHHHh-----cCccHHHHHHHHHHHHHHHHhcC--------------------cHHHHHHHHHHHH
Confidence 112233456666665422 33457889999998887664321 1234567777777
Q ss_pred ccCCCCCCCCcchHHHHHHHHHHHHHHHHhhccCCCCCCCCCccccccCCCCccccccccCH-HHHHHHHHHHHHHhhhh
Q 001381 869 DDYSVDNRGDVGSWVREAAVDGLEICTYILCKRDFVPSPEKPQEVKSELPGNVTAEKTLFDA-NLATNLVAGIVKQAVEK 947 (1089)
Q Consensus 869 ~DYT~D~RGDVGSwVR~aa~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~llrq~~Ek 947 (1089)
..- -.-||.+++..|..++.-+. ...+++ ..+..++..+.++..++
T Consensus 149 ~~K--------npkv~~~~l~~l~~~l~~fg-------------------------~~~~~~k~~l~~i~~~l~k~l~d~ 195 (278)
T 4ffb_C 149 EKK--------LPKLIAAAANCVYELMAAFG-------------------------LTNVNVQTFLPELLKHVPQLAGHG 195 (278)
T ss_dssp GCS--------CHHHHHHHHHHHHHHHHHHT-------------------------TTTCCHHHHHHHHGGGHHHHHTCS
T ss_pred hcc--------CHHHHHHHHHHHHHHHHHhC-------------------------CCcCCchhHHHHHHHHHHHHHhCC
Confidence 553 24699999999988753321 111222 34566777888899999
Q ss_pred hHHHHHHHHHHHHHHhhc
Q 001381 948 MDKLREAAAKVLRRILYN 965 (1089)
Q Consensus 948 iD~vR~~A~~~L~~l~~~ 965 (1089)
-..||..|..++..+...
T Consensus 196 ~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 196 DRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp SHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 999999999999988644
No 97
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=88.30 E-value=71 Score=41.34 Aligned_cols=76 Identities=13% Similarity=0.151 Sum_probs=52.7
Q ss_pred CCChhHHHHHHHHHHHHHhh----hCcchhhhHHHHHHhhcC----CC----CCCcchHHHHHHHHHHHhcCCCCCCccc
Q 001381 395 DTDTVVRWSAAKGIGRITSC----LTSSLSEEVFSSVLELFS----PG----EGDGSWHGGCLALAELARRGLLLPSSLP 462 (1089)
Q Consensus 395 d~dt~vR~saAK~l~rI~~~----L~~~~a~~vi~~il~~l~----~~----~~~~~wHg~~LaLael~~~~ll~p~~l~ 462 (1089)
+.+..||+-||..|...+.+ ||.+-...+=+.+++.+. .. .+..-....+.++++++++.. |+.-|
T Consensus 72 s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~--P~~Wp 149 (1073)
T 3gjx_A 72 SQNMNTKYYGLQILENVIKTRWKILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEW--PKHWP 149 (1073)
T ss_dssp CCSHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHT--TTTCT
T ss_pred CCCHHHHHHHHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhC--hhhcc
Confidence 46889999999999998885 777766666666666542 11 122335779999999999964 55556
Q ss_pred chHHHHHHhh
Q 001381 463 KVVPVIVKAL 472 (1089)
Q Consensus 463 ~il~~i~~~L 472 (1089)
..++-+...+
T Consensus 150 ~fi~dLv~~~ 159 (1073)
T 3gjx_A 150 TFISDIVGAS 159 (1073)
T ss_dssp THHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 6666655443
No 98
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=87.20 E-value=8.6 Score=41.08 Aligned_cols=163 Identities=16% Similarity=0.055 Sum_probs=105.6
Q ss_pred ccCCCCHHHHHHHHHHHHHHHccCchhh----HHHHHHHhccccCCCChhhHHHHHHHHHHHHHHHhcccccCChhHHHH
Q 001381 595 KICHWDKVLRELAAEALSALVKYDPEYF----ANFILEKLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPADKQKI 670 (1089)
Q Consensus 595 ~l~h~D~~iR~laa~aL~~L~~~~~~~~----~~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~l~~~~~~~~~~~~~~ 670 (1089)
.+.+.|..++.-|-.+|+++.+..|..+ .+..+|.++.-+.+.|--+---++-++.-++.+ .+.+++...+
T Consensus 41 LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~-----vpL~~~~y~K 115 (265)
T 3b2a_A 41 LAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKD-----VPMGSKTFLK 115 (265)
T ss_dssp HTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTT-----CCBCHHHHHH
T ss_pred HHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcC-----CCCCHHHHHH
Confidence 4468899999999999999999876543 456778887777666544444455666666543 3456777777
Q ss_pred HHhhhHHHHhhhhccCcchHHHHHHHHHHHHHhhhcCCCCchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhh
Q 001381 671 VAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLPEKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMV 750 (1089)
Q Consensus 671 i~~i~~~~~~~~l~r~~~gelir~a~~~lI~~ls~~~lp~~~~~~~~~~~~L~~~L~~~~~~V~~aAa~Al~~l~~~y~~ 750 (1089)
+...+..+.+ .+.+++++-+....+.+... ... +...+.+..-+..++..++.+|-.++..+.. .
T Consensus 116 l~~aL~dlik------~~~~il~~eaae~Lgklkv~--~~~----~~V~~~l~sLl~Skd~~vK~agl~~L~eia~---~ 180 (265)
T 3b2a_A 116 AAKTLVSLLE------SPDDMMRIETIDVLSKLQPL--EDS----KLVRTYINELVVSPDLYTKVAGFCLFLNMLN---S 180 (265)
T ss_dssp HHHHHHHHTT------SCCHHHHHHHHHHHHHCCBS--CCC----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGG---G
T ss_pred HHHHHHHHhc------CCCchHHHHHHHHhCcCCcc--cch----HHHHHHHHHHHhCCChhHHHHHHHHHHHhhc---c
Confidence 6666666543 24667888777777766321 111 2333334444578999999888777655433 1
Q ss_pred ccCcchhhhhHHHHHHHhCCCChhhhh
Q 001381 751 AADSGVVGGISLKYMEQLTDPNPAIRR 777 (1089)
Q Consensus 751 ~~~~~~~~~~v~~~~~~L~s~~~~~r~ 777 (1089)
+.+.+....+++..-..|++.++..+.
T Consensus 181 S~D~~i~~~I~~eI~elL~~eD~~l~e 207 (265)
T 3b2a_A 181 SADSGHLTLILDEIPSLLQNDNEFIVE 207 (265)
T ss_dssp CSSCCCGGGTTTTHHHHHTCSCHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 223444567777777777777776655
No 99
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=86.51 E-value=15 Score=39.27 Aligned_cols=164 Identities=11% Similarity=0.017 Sum_probs=103.6
Q ss_pred cchHHHHHHHHhCccCCCCHHHHHHHHHHHHHHHccCchhhHHHHHHHhcc-ccCCCChhhHHHHHHHHHHHHHHHhccc
Q 001381 582 GYLYPFVDELLYNKICHWDKVLRELAAEALSALVKYDPEYFANFILEKLTP-FTLSTDLCTRHGATLAAGEVVLALCKYD 660 (1089)
Q Consensus 582 ~Y~~~li~~Ll~~~l~h~D~~iR~laa~aL~~L~~~~~~~~~~~vlp~Ll~-~l~~~d~~~RHG~lLalaevl~~l~~~~ 660 (1089)
+++.++...|.+ |.-.++|-+|+..|+++ ..+ ..++|.+.+ -.....|.+|.-+..++.+++.+..
T Consensus 70 ~~~~~la~~L~~----~~~deVR~~Av~lLg~~-~~~-----~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~--- 136 (240)
T 3l9t_A 70 EYIKKLAFLAYQ----SDVYQVRMYAVFLFGYL-SKD-----KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIE--- 136 (240)
T ss_dssp HHHHHHHHHHHT----CSSHHHHHHHHHHHHHT-TTS-----HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHh----CcchHHHHHHHHHHHhc-cCc-----HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcC---
Confidence 566677777765 66569999999999988 421 457777776 4457789999998888888886332
Q ss_pred ccCChhHHHHHHhhhHHHHhhhhccCcchHHHHHHHHHHHHHhhhcCCCCchhhHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 001381 661 YALPADKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLPEKTKRSLLDTLNENLRHPNSQIQNAAVKA 740 (1089)
Q Consensus 661 ~~~~~~~~~~i~~i~~~~~~~~l~r~~~gelir~a~~~lI~~ls~~~lp~~~~~~~~~~~~L~~~L~~~~~~V~~aAa~A 740 (1089)
.+.... .+....+. ...-+|.+++....--+ ..|......+..+.+|+....+++.-||.+.+.+
T Consensus 137 ---pe~~l~----~~~~W~~d------~n~~VRR~Ase~~rpW~--~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~ 201 (240)
T 3l9t_A 137 ---YKKALP----IIDEWLKS------SNLHTRRAATEGLRIWT--NRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNA 201 (240)
T ss_dssp ---TTTTHH----HHHHHHHC------SSHHHHHHHHHHTCSGG--GSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHH
T ss_pred ---HHHHHH----HHHHHhcC------CCHHHHHHHHHhhHHHh--ccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 111111 12222211 23356666555442211 1122222345677888888899999999999999
Q ss_pred HHHHHHHhhhccCcchhhhhHHHHHHHhCCCChhhhhhHHHH
Q 001381 741 LKPFVQTYMVAADSGVVGGISLKYMEQLTDPNPAIRRGSALA 782 (1089)
Q Consensus 741 l~~l~~~y~~~~~~~~~~~~v~~~~~~L~s~~~~~r~G~a~a 782 (1089)
|..+.+.. .+.|..+++.....++.++.-+=.|
T Consensus 202 LrD~SK~~---------Pd~V~~~~~~w~~~~~~~~~i~k~A 234 (240)
T 3l9t_A 202 LRDISKKF---------PDLVKIELKNWKLESKEINQVYKLA 234 (240)
T ss_dssp HHHHHTTC---------HHHHHHHHHTCCCCSHHHHHHHHHH
T ss_pred HHHHhhhC---------HHHHHHHHHHhhccCHhHHHHHHHH
Confidence 98876632 5777788777654455555433333
No 100
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=85.49 E-value=11 Score=40.20 Aligned_cols=72 Identities=15% Similarity=0.146 Sum_probs=48.0
Q ss_pred HHHHhcCCCchhhHHHHHHHHHHhcccCCCCCCccceecccccchhhhHHHHHHHHHHHHhhhcchHHHHHHHHhCccCC
Q 001381 519 LTVACYDREVNCRRAAAAAFQENVGRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNKICH 598 (1089)
Q Consensus 519 l~~alfD~e~~iRRaAsAAlQE~vGR~g~~p~GI~il~~~d~~~v~~r~~a~~~va~~va~~~~Y~~~li~~Ll~~~l~h 598 (1089)
+..=+-|++.++||+|+...-- .+..| .+......++..| .....+
T Consensus 144 ~~~W~~d~n~~VRR~Ase~~rp----W~~~~-----------------------------~~k~dp~~ll~iL-~~L~~D 189 (240)
T 3l9t_A 144 IDEWLKSSNLHTRRAATEGLRI----WTNRP-----------------------------YFKENPNEAIRRI-ADLKED 189 (240)
T ss_dssp HHHHHHCSSHHHHHHHHHHTCS----GGGST-----------------------------TTTTCHHHHHHHH-HTTTTC
T ss_pred HHHHhcCCCHHHHHHHHHhhHH----Hhccc-----------------------------hhhcCHHHHHHHH-HHhcCC
Confidence 4566789999999999887310 00000 0111223334333 346679
Q ss_pred CCHHHHHHHHHHHHHHHccCchhhHH
Q 001381 599 WDKVLRELAAEALSALVKYDPEYFAN 624 (1089)
Q Consensus 599 ~D~~iR~laa~aL~~L~~~~~~~~~~ 624 (1089)
.+..||+--|.+|..+++.+|+.+..
T Consensus 190 ~s~yVrKSVan~LrD~SK~~Pd~V~~ 215 (240)
T 3l9t_A 190 VSEYVRKSVGNALRDISKKFPDLVKI 215 (240)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhhCHHHHHH
Confidence 99999999999999999999986554
No 101
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=82.77 E-value=35 Score=36.47 Aligned_cols=185 Identities=13% Similarity=0.016 Sum_probs=115.3
Q ss_pred HHHHhccccCCCChhhHHHHHHHHHHHHHHHhcccccCChhHHHHHHhhhHHHHhhhhccCcchHHHHHHHHHHHHHhhh
Q 001381 626 ILEKLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPADKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISL 705 (1089)
Q Consensus 626 vlp~Ll~~l~~~d~~~RHG~lLalaevl~~l~~~~~~~~~~~~~~i~~i~~~~~~~~l~r~~~gelir~a~~~lI~~ls~ 705 (1089)
.+..++..+...|..++-.++.++.+++....+ ......+..+++.+.+ +.+. ..|-+.--+.+.++.+-
T Consensus 34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~------~l~~~~~e~~Ld~iI~--llk~-~dEkval~A~r~L~~LL- 103 (265)
T 3b2a_A 34 ALFLILELAGEDDETTRLRAFVALGEILKRADS------DLRMMVLERHLDVFIN--ALSQ-ENEKVTIKALRALGYLV- 103 (265)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCH------HHHHHHHHHHHHHHHH--TCCS-TTHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhccc------cccHHHHHHHHHHHHH--HHhc-cchhHHHHHHHHHHHHH-
Confidence 455666777889999999999999999986421 1112333344444432 1111 23444444555565543
Q ss_pred cCCCCchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCcchhhhhHHHHHHHhCCCChhhhhhHHHHhhc
Q 001381 706 SFVSLPEKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLTDPNPAIRRGSALALGV 785 (1089)
Q Consensus 706 ~~lp~~~~~~~~~~~~L~~~L~~~~~~V~~aAa~Al~~l~~~y~~~~~~~~~~~~v~~~~~~L~s~~~~~r~G~a~aLG~ 785 (1089)
.+.|++++......+.+.+.++.+++-++..|++.++.+.- ......++.-....++|.+.........+|-.
T Consensus 104 e~vpL~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgklkv-------~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~e 176 (265)
T 3b2a_A 104 KDVPMGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKLQP-------LEDSKLVRTYINELVVSPDLYTKVAGFCLFLN 176 (265)
T ss_dssp TTCCBCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHCCB-------SCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcCCc-------ccchHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 37788888888888888888999999999999999987711 11124555555555678777665544445444
Q ss_pred cchHhh-hhhHHHHHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHhh
Q 001381 786 LPYELL-ANSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCET 833 (1089)
Q Consensus 786 lp~~~~-~~~~~~i~~~L~~~~~~~~~~~~~d~e~R~~al~sL~~i~~~ 833 (1089)
++...- ...+..|++.+-..+ ...|+.-+--|+.++..+.+.
T Consensus 177 ia~~S~D~~i~~~I~~eI~elL------~~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 177 MLNSSADSGHLTLILDEIPSLL------QNDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp HGGGCSSCCCGGGTTTTHHHHH------TCSCHHHHHHHHHHHHHHTTS
T ss_pred hhcccCCHHHHHHHHHHHHHHH------cCCCHHHHHHHHHHHHHHHcC
Confidence 443221 011333443333332 344899999999999987653
No 102
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=77.67 E-value=28 Score=45.70 Aligned_cols=200 Identities=13% Similarity=0.075 Sum_probs=111.5
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhhhccCcchhhhhHHHHHHHhC-C------CChhhhhhHHHHhhccchHhhhhhHHHHH
Q 001381 727 RHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLT-D------PNPAIRRGSALALGVLPYELLANSWRDVL 799 (1089)
Q Consensus 727 ~~~~~~V~~aAa~Al~~l~~~y~~~~~~~~~~~~v~~~~~~L~-s------~~~~~r~G~a~aLG~lp~~~~~~~~~~i~ 799 (1089)
...+..||..|+..++..+..+...-+.+....+-+.+++.+. . .....|...+.+++.+-+......+..++
T Consensus 57 ~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp~ll 136 (1204)
T 3a6p_A 57 KTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWPDML 136 (1204)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCTTHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccchHHH
Confidence 4567889999999999888775544333333344444444442 1 35677888888888887665555666777
Q ss_pred HHHhhhccccCCCCCCCHHHHHHHHHHHHHHHhhhccccccccccCCcchhhhhhhhHHHHHHHHHHhcccCC------C
Q 001381 800 LKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYS------V 873 (1089)
Q Consensus 800 ~~L~~~~~~~~~~~~~d~e~R~~al~sL~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~L~DYT------~ 873 (1089)
..|+..+. .+...+..++..|..++..+........ .....-.......+..|++.+...+.++. +
T Consensus 137 ~~L~~~~~-------~~~~~~e~~L~iL~~L~Eev~~~~~~~~-~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~ 208 (1204)
T 3a6p_A 137 IELDTLSK-------QGETQTELVMFILLRLAEDVVTFQTLPP-QRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVK 208 (1204)
T ss_dssp HHHHHHHH-------TCHHHHHHHHHHHHHHHHHHHTSCCSCH-HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhc-------CCHHHHHHHHHHHHHHHHHHccccchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 77776642 1345677788888887764322110000 00000001112345678888877776641 1
Q ss_pred CCCCCcc-----hHHHHHHHHHHHHHHHHhhccCCCCCCCCCccccccCCCCccccccccCHHHH----HHHHHHHHHHh
Q 001381 874 DNRGDVG-----SWVREAAVDGLEICTYILCKRDFVPSPEKPQEVKSELPGNVTAEKTLFDANLA----TNLVAGIVKQA 944 (1089)
Q Consensus 874 D~RGDVG-----SwVR~aa~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~llrq~ 944 (1089)
..-|++. .-++.++++++..++ .+++...+ ..++..+.++.
T Consensus 209 ~~~~~~~~~~~~~~l~~~aL~~l~~~l------------------------------~Wi~~~~i~~~~~~ll~~l~~~l 258 (1204)
T 3a6p_A 209 TDTSQESKAQANCRVGVAALNTLAGYI------------------------------DWVSMSHITAENCKLLEILCLLL 258 (1204)
T ss_dssp TCSTTHHHHHHHHHHHHHHHHHHHTTT------------------------------TTSCHHHHHTTTSHHHHHHHHGG
T ss_pred ccccchhhhhhhHHHHHHHHHHHHHHH------------------------------hccCHHHHHhccchHHHHHHHHc
Confidence 1122221 125556666554321 11222221 12455555544
Q ss_pred hhhhHHHHHHHHHHHHHHhhcc
Q 001381 945 VEKMDKLREAAAKVLRRILYNK 966 (1089)
Q Consensus 945 ~EkiD~vR~~A~~~L~~l~~~~ 966 (1089)
. -+++|..|.+||..++...
T Consensus 259 ~--~~~lr~~A~ecL~~i~s~~ 278 (1204)
T 3a6p_A 259 N--EQELQLGAAECLLIAVSRK 278 (1204)
T ss_dssp G--CTTTHHHHHHHHHHHHTCC
T ss_pred C--CHHHHHHHHHHHHHHHhCC
Confidence 4 3789999999999998643
No 103
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=74.12 E-value=23 Score=43.11 Aligned_cols=170 Identities=14% Similarity=0.080 Sum_probs=98.0
Q ss_pred hhhhHHHHHHHhC-CCChhhhhhHHHHhhccchHhhhhhHHHHHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHhhhc
Q 001381 757 VGGISLKYMEQLT-DPNPAIRRGSALALGVLPYELLANSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLT 835 (1089)
Q Consensus 757 ~~~~v~~~~~~L~-s~~~~~r~G~a~aLG~lp~~~~~~~~~~i~~~L~~~~~~~~~~~~~d~e~R~~al~sL~~i~~~~g 835 (1089)
..+.|+++++.++ +.-..-||.+..+|-++.+..-..--..-+..|+..++. +..|.|+-+.+++.|..++..-+
T Consensus 19 ~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~----d~~D~e~v~~~LetL~~l~~~~~ 94 (651)
T 3grl_A 19 EAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQT----DRSDSEIIGYALDTLYNIISNDE 94 (651)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHS----CTTCHHHHHHHHHHHHHHHCCC-
T ss_pred hhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhc----ccccHHHHHHHHHHHHHHhCCCC
Confidence 3678888888886 556677999999998885432211112224445544431 34689999999999887664221
Q ss_pred cccccc--cccCCcchhhhhhhhH---HHHHHHHHHhcccCCCCCCCCcchHHHHHHHHHHHHHHHHhhccCCCCCCCCC
Q 001381 836 QSQENS--LIHSGEDEISLFHLIK---NEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEICTYILCKRDFVPSPEKP 910 (1089)
Q Consensus 836 ~~~~~~--~~~~~~~~~~~~~~~~---~~i~~~Ll~~L~DYT~D~RGDVGSwVR~aa~~~l~~l~~ll~~~~~~~~~~~~ 910 (1089)
...... ...+.+-+... .+.+ ..-+..|+..|+.+ --|||..|++.|..++ ..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~-~d~f~~~~~~i~~Ll~lL~~~--------df~vR~~alqlL~~L~---~~---------- 152 (651)
T 3grl_A 95 EEEVEENSTRQSEDLGSQF-TEIFIKQQENVTLLLSLLEEF--------DFHVRWPGVKLLTSLL---KQ---------- 152 (651)
T ss_dssp -------------CHHHHH-HHHHHHSTHHHHHHHHHTTCC--------CHHHHHHHHHHHHHHH---HH----------
T ss_pred cccccccccccchHHHHHH-HHHHHcCCccHHHHHHHhcCc--------cHHHHHHHHHHHHHHH---hc----------
Confidence 100000 00000101000 0111 23467788888653 3589999999998875 20
Q ss_pred ccccccCCCCccccccccCHHHHH--HHHHHHHHHhhhhhHHHHHHHHHHHHHHhhc
Q 001381 911 QEVKSELPGNVTAEKTLFDANLAT--NLVAGIVKQAVEKMDKLREAAAKVLRRILYN 965 (1089)
Q Consensus 911 ~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~llrq~~EkiD~vR~~A~~~L~~l~~~ 965 (1089)
.+....+.... .-+.+|+...-++-+-+|.+|..+|..+..+
T Consensus 153 -------------r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~ 196 (651)
T 3grl_A 153 -------------LGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRS 196 (651)
T ss_dssp -------------SHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTT
T ss_pred -------------CcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcC
Confidence 01101111110 2346778788888999999999999998654
No 104
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=72.48 E-value=4.2 Score=52.25 Aligned_cols=106 Identities=20% Similarity=0.216 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHhhcCCCC-hhHHHHHHHHHHHHHhhh-CcchhhhHHHHHHhhcCC-----------CCCCcchHHHHHH
Q 001381 380 DILEEIIEILLSGLRDTD-TVVRWSAAKGIGRITSCL-TSSLSEEVFSSVLELFSP-----------GEGDGSWHGGCLA 446 (1089)
Q Consensus 380 e~vE~iI~~ll~~L~d~d-t~vR~saAK~l~rI~~~L-~~~~a~~vi~~il~~l~~-----------~~~~~~wHg~~La 446 (1089)
+..+.|.+.++..|.|+. -.||-.||..|+-++... +....++++....+.+.. ..+....||+.|+
T Consensus 839 ~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLg 918 (997)
T 1vsy_5 839 EEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLG 918 (997)
T ss_dssp THHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHH
Confidence 345788888899999999 999999999999999887 644445666665555532 0112568999999
Q ss_pred HHHHHhcCC---CCCCcccchHHHHHHhhhhhccccccCCChhhhhh
Q 001381 447 LAELARRGL---LLPSSLPKVVPVIVKALHYDIRRGSHSVGSHVRDA 490 (1089)
Q Consensus 447 Lael~~~~l---l~p~~l~~il~~i~~~L~f~~r~~~~svG~~VRDA 490 (1089)
|+-+...-- ++|..+|+++..+.... . ..+.+|..|+.+
T Consensus 919 L~AlV~a~Py~vP~P~w~P~~l~~La~~~----~-~~~~i~~tvk~t 960 (997)
T 1vsy_5 919 LGAIISAFPYVFPLPPWIPKNLSNLSSWA----R-TSGMTGNAAKNT 960 (997)
T ss_dssp HHHHHTTCSCCSSCCTHHHHHHHHHHTTS----S-SCSSHHHHTHHH
T ss_pred HHHHHhhCCCCCCCCcccHHHHHHHHHHh----C-CCCchHHHHHHH
Confidence 999877532 23666677665553222 1 134577777665
No 105
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=71.57 E-value=17 Score=37.71 Aligned_cols=128 Identities=14% Similarity=0.136 Sum_probs=75.9
Q ss_pred HHHHhcCCCchhhHHHHHHHHHHhcccCCCCCCccce-ecc--cccchhhhHHHHHHHHH-HHH----hhhcchHHHHHH
Q 001381 519 LTVACYDREVNCRRAAAAAFQENVGRQGNYPHGIDIV-NTA--DYFSLSSRVYSYLHVAV-FIA----QYEGYLYPFVDE 590 (1089)
Q Consensus 519 l~~alfD~e~~iRRaAsAAlQE~vGR~g~~p~GI~il-~~~--d~~~v~~r~~a~~~va~-~va----~~~~Y~~~li~~ 590 (1089)
++.+|.+ ..|++|-+.++.--|=+-..|+=+.-+ ..+ ....+...... +.+.. .+. ..+.|...+++-
T Consensus 16 It~a~~~---~~r~~aL~sL~~D~gL~~LlPyf~~fI~~~v~~nl~~l~~L~~l-m~~~~ALl~N~~l~lepYlH~Lips 91 (196)
T 4atg_A 16 ILSMIKS---DMKDIAIECLEKESGLQQLVPYFIQHISELILKSFKEAEVLKTC-IALYFSLIKNKHVFIDPYLHQILPS 91 (196)
T ss_dssp HHHHHTS---TTHHHHHHHHHHCSSCTTTHHHHHHHHHHHHHHCTTCHHHHHHH-HHHHHHHHHCTTCCCGGGHHHHHHH
T ss_pred HHHHHHh---HHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHhccCCHHHHHHH-HHHHHHHHcCCCCChHHHHHHHHHH
Confidence 4555555 579999999999888777666322111 000 00011111111 12222 222 124566655555
Q ss_pred HH----hCccCCCCHHHHHHHHHHHHHHHccCch---hhHHHHHHHhccccC--CCChhhHHHHHHHHHHH
Q 001381 591 LL----YNKICHWDKVLRELAAEALSALVKYDPE---YFANFILEKLTPFTL--STDLCTRHGATLAAGEV 652 (1089)
Q Consensus 591 Ll----~~~l~h~D~~iR~laa~aL~~L~~~~~~---~~~~~vlp~Ll~~l~--~~d~~~RHG~lLalaev 652 (1089)
++ .+.++.- .+|+.||+-|+.+++..++ .+...++..+.+.+. +....+.-|++.+++++
T Consensus 92 vLtCll~k~l~~~--~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~l 160 (196)
T 4atg_A 92 LLTCVIGKSIVDD--DVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSIL 160 (196)
T ss_dssp HHHHHHCTTCCCH--HHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccCHH--HHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHh
Confidence 54 4455543 8999999999999986543 345566666666554 35678889999999887
No 106
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=69.94 E-value=27 Score=40.90 Aligned_cols=129 Identities=16% Similarity=0.108 Sum_probs=77.1
Q ss_pred cchHHHHHHHHHHHHHhhhcCCCCchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCcchhhhhHHHHHH
Q 001381 687 KGGEIMRSAVSRFIECISLSFVSLPEKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYME 766 (1089)
Q Consensus 687 ~~gelir~a~~~lI~~ls~~~lp~~~~~~~~~~~~L~~~L~~~~~~V~~aAa~Al~~l~~~y~~~~~~~~~~~~v~~~~~ 766 (1089)
+|++-...-++.+|..... ++|- ..+.-++.+.+...+.+..||..|..++..++. . +.+.++.+-+.+
T Consensus 39 kg~~k~K~LaaQ~I~kffk-~FP~---l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck-----~--~~i~kiaDvL~Q 107 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFK-HFPE---LADSAINAQLDLCEDEDVSIRRQAIKELPQFAT-----G--ENLPRVADILTQ 107 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGG-GCGG---GHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCC-----T--TCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHh-hChh---hHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhh-----h--hhhhhHHHHHHH
Confidence 4566677788889987764 5553 223333333333388999999999988877654 1 445788888888
Q ss_pred HhCCCChhhhhhHHHHhhccchHhhhhhHHHHHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHhhhcc
Q 001381 767 QLTDPNPAIRRGSALALGVLPYELLANSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQ 836 (1089)
Q Consensus 767 ~L~s~~~~~r~G~a~aLG~lp~~~~~~~~~~i~~~L~~~~~~~~~~~~~d~e~R~~al~sL~~i~~~~g~ 836 (1089)
.|++..+....-.-.+|-.+-+.-....+..++..+.. .+..+|-.+++=|..-+..++.
T Consensus 108 lLqtdd~~E~~~V~~sL~sllk~Dpk~tl~~lf~~i~~----------~~e~~Rer~lkFi~~kl~~l~~ 167 (507)
T 3u0r_A 108 LLQTDDSAEFNLVNNALLSIFKMDAKGTLGGLFSQILQ----------GEDIVRERAIKFLSTKLKTLPD 167 (507)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH----------SCHHHHHHHHHHHHHHGGGSCT
T ss_pred HHhccchHHHHHHHHHHHHHHhcChHHHHHHHHHHHcc----------cchHHHHHHHHHHHHHHhhcch
Confidence 88877665555444444444333222222233332211 2457788887777665555443
No 107
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=62.30 E-value=92 Score=32.82 Aligned_cols=66 Identities=11% Similarity=-0.087 Sum_probs=49.3
Q ss_pred HHHHHhCccCCCCH--HHHHHHHHHHHHHHccCchh---hH-HHHHHHhccccCCCChhhHHHHHHHHHHHHH
Q 001381 588 VDELLYNKICHWDK--VLRELAAEALSALVKYDPEY---FA-NFILEKLTPFTLSTDLCTRHGATLAAGEVVL 654 (1089)
Q Consensus 588 i~~Ll~~~l~h~D~--~iR~laa~aL~~L~~~~~~~---~~-~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~ 654 (1089)
++.|+. .|.+.|. .++..|+.+|..|+..++.. +. .-.+|.|.+.+.+.+...+.-++.+|.-+..
T Consensus 10 i~~lV~-lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~ 81 (233)
T 3tt9_A 10 LERAVS-MLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVF 81 (233)
T ss_dssp HHHHHH-TCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHH-HhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 344444 5667777 89999999999999876542 22 2357999999999888999888888877753
No 108
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=62.29 E-value=3.1e+02 Score=34.27 Aligned_cols=166 Identities=15% Similarity=0.137 Sum_probs=97.1
Q ss_pred chHHHHHHHHHHHhhcC--CCChhHHHHHHHHHHHHHhhhCcchhhhHHHHHHhhcCCCCCCcchHH-HHH---HHHHHH
Q 001381 378 VPDILEEIIEILLSGLR--DTDTVVRWSAAKGIGRITSCLTSSLSEEVFSSVLELFSPGEGDGSWHG-GCL---ALAELA 451 (1089)
Q Consensus 378 v~e~vE~iI~~ll~~L~--d~dt~vR~saAK~l~rI~~~L~~~~a~~vi~~il~~l~~~~~~~~wHg-~~L---aLael~ 451 (1089)
.++.+...++.++.-+. ..+..+ -.....+.-+..++++++.+++++-+.+-+..+....+-.- ++| .++-++
T Consensus 513 f~~~v~~f~drvf~llen~~Ee~l~-~~l~~~~~~l~~~lS~~if~~~l~k~~~fv~~n~~~~a~~~v~~L~~~~~~a~~ 591 (799)
T 1vsy_4 513 FQSMLKVYVEKIFQLVDVDLEDSLV-TKINQTTMILQESMDDKIFNYFASLLNRNFWSNDSFKEKDPNYELVTIPLAALV 591 (799)
T ss_dssp HHHHHHHHHHHHHHHTTSCCCTHHH-HHHHHHHHHHHHTBCHHHHHHHHHHHHHHHHSCSCCCSSSCCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCchHHHH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 34566666666666665 233444 45777888888999999888888888875543322111111 223 145566
Q ss_pred hcCCCCCCcccchHHHHHHhhhhhccccccC--CChhh--hhhhhHH---HHHhhhccCccchhHHHHHHHHHHHHHHhc
Q 001381 452 RRGLLLPSSLPKVVPVIVKALHYDIRRGSHS--VGSHV--RDAAAYV---CWAFGRAYCHTDMRNILEQIAPHLLTVACY 524 (1089)
Q Consensus 452 ~~~ll~p~~l~~il~~i~~~L~f~~r~~~~s--vG~~V--RDAacfi---~WslaR~~~~~~l~~~~~~l~~~Ll~~alf 524 (1089)
++. |+.++..+|.+...+..+...|++| .|+-+ ||.+-.- +-+-+=.+....+.+|.+.+..- +..++
T Consensus 592 ~~~---P~~~~~~~p~l~~~i~~~i~~ga~s~rs~~e~~~~D~~L~w~l~iL~~~v~~~g~~lL~y~deL~~i--l~~~~ 666 (799)
T 1vsy_4 592 RRN---NGLSKELVRTLLFHIKEQIKRGAGSVRSTSEIQQRDVKLVLYLTALNDVLRNCHESLLEYSDELITF--MKYLY 666 (799)
T ss_dssp HHC---GGGHHHHHHHHHHHHHHHHHTTTTCSCCSSSCCTTTHHHHHHHHHHHHHHTTTGGGGGTTHHHHHHH--HHHHH
T ss_pred HhC---HHHHHHHHHHHHHHHHHHHhccccccccccccCcchHHHHHHHHHHHHHHhcCcHHHHccHHHHHHH--HHHHH
Confidence 664 4467788899988888776666555 34445 8875321 12222233445555666666552 23445
Q ss_pred CCCchhh--HHHHHHHHHHhccc-CCCC
Q 001381 525 DREVNCR--RAAAAAFQENVGRQ-GNYP 549 (1089)
Q Consensus 525 D~e~~iR--RaAsAAlQE~vGR~-g~~p 549 (1089)
+..-+.+ ++++.-++-+++.. .+.|
T Consensus 667 ~~~k~~~~~~~~~~ll~~lL~sLt~~yp 694 (799)
T 1vsy_4 667 DNVTNPPLDVITSIVIHSALATLCTTEI 694 (799)
T ss_dssp HSCCCHHHHHHHTTHHHHHHHHHHCCBC
T ss_pred HHhcCcchHHHHHHHHHHHHHHhhheee
Confidence 5333444 66777777776665 4433
No 109
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=60.01 E-value=1.1e+02 Score=32.96 Aligned_cols=117 Identities=13% Similarity=0.129 Sum_probs=77.0
Q ss_pred hcchHHHHHHHHhCccCCCCHHHHHHHHHHHHHHHccCchhhHHHHHHHhccccCCCChhhHHHHHHHHHHHHHHHhccc
Q 001381 581 EGYLYPFVDELLYNKICHWDKVLRELAAEALSALVKYDPEYFANFILEKLTPFTLSTDLCTRHGATLAAGEVVLALCKYD 660 (1089)
Q Consensus 581 ~~Y~~~li~~Ll~~~l~h~D~~iR~laa~aL~~L~~~~~~~~~~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~l~~~~ 660 (1089)
+.+.+.+++.++. ...+.+.++|+..+.-+.+.+..+++ +...+++.|...+.+.|..+.-.++.+.+.+....-+..
T Consensus 48 p~ll~~~l~~il~-~~~~~~~~vrk~~~~Fi~e~~~~k~~-l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i 125 (257)
T 3gs3_A 48 AELAEEFLESVLS-LAHDSNMEVRKQVVAFVEQVCKVKVE-LLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYL 125 (257)
T ss_dssp GGGHHHHHHHHHG-GGGCSCHHHHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHH-hccCChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777776 34578999999999999999988876 555678888777778888777778998888876654432
Q ss_pred ccCC------hhHHHHHHhhhHHHHhhhhccCcchHHHHHHHHHHHHH
Q 001381 661 YALP------ADKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIEC 702 (1089)
Q Consensus 661 ~~~~------~~~~~~i~~i~~~~~~~~l~r~~~gelir~a~~~lI~~ 702 (1089)
...+ ++..+.+..+-..+.+. +. .+.+=+|-.+.+|++.
T Consensus 126 ~~~~~~~~~~~~~W~~m~~lK~~Il~~--~~-s~n~gvkl~~iKF~e~ 170 (257)
T 3gs3_A 126 CSLMEPGDSAEQAWNILSLIKAQILDM--ID-NENDGIRTNAIKFLEG 170 (257)
T ss_dssp TTSSSCCHHHHHHHHHHHHHHHHHHHG--GG-SSCHHHHHHHHHHHHH
T ss_pred hcCCCCcchHHHHHHHHHHHHHHHHHH--Hc-cCCcchHHHHHHHHHH
Confidence 2211 23334444433333321 22 1345566666666665
No 110
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=54.53 E-value=1.4e+02 Score=38.43 Aligned_cols=141 Identities=18% Similarity=0.151 Sum_probs=89.6
Q ss_pred hhhHHHHHHHhCC----CChhhhhhHHHHhhccchHhhh-------hhHHHHHHHHhhhccccCCCCCCCHHHHHHHHHH
Q 001381 758 GGISLKYMEQLTD----PNPAIRRGSALALGVLPYELLA-------NSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRG 826 (1089)
Q Consensus 758 ~~~v~~~~~~L~s----~~~~~r~G~a~aLG~lp~~~~~-------~~~~~i~~~L~~~~~~~~~~~~~d~e~R~~al~s 826 (1089)
.++++.+...+++ .++..+..+.+++|.+-..... ..+..+.+.|..++ ...+.+.+.-++++
T Consensus 390 ~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~------~~~~~~~~~~~Lka 463 (1056)
T 1lsh_A 390 RESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSS------DRAKEEEIVLALKA 463 (1056)
T ss_dssp HHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHH------HTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHH------hcCChHHHHHHHHH
Confidence 5666666666653 4566778889999888654421 22456666666654 23468889999999
Q ss_pred HHHHHhhhccccccccccCCcchhhhhhhhHHHHHHHHHHhcccCCCCCCCCcchHHHHHHHHHHHHHHHHhhccCCCCC
Q 001381 827 LVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEICTYILCKRDFVPS 906 (1089)
Q Consensus 827 L~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~L~DYT~D~RGDVGSwVR~aa~~~l~~l~~ll~~~~~~~~ 906 (1089)
|+.+ |. ...++.|..++..-.. ...+.---||.+|+.|+..+.
T Consensus 464 LGN~----g~---------------------p~~l~~l~~~l~~~~~-~~~~~~~rvr~aAi~ALr~~~----------- 506 (1056)
T 1lsh_A 464 LGNA----GQ---------------------PNSIKKIQRFLPGQGK-SLDEYSTRVQAEAIMALRNIA----------- 506 (1056)
T ss_dssp HHHH----TC---------------------GGGHHHHHTTSTTSSS-CCCCSCHHHHHHHHHTTTTGG-----------
T ss_pred hhcc----CC---------------------hhHHHHHHHhhcCccc-cccccchHHHHHHHHHHHHhh-----------
Confidence 9875 22 1234555555543211 122233458999999886541
Q ss_pred CCCCccccccCCCCccccccccCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 001381 907 PEKPQEVKSELPGNVTAEKTLFDANLATNLVAGIVKQAVEKMDKLREAAAKVLRRI 962 (1089)
Q Consensus 907 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~llrq~~EkiD~vR~~A~~~L~~l 962 (1089)
-..|..+++++-.+.+.-.|.- .||..|..+|.+.
T Consensus 507 --------------------~~~p~~v~~il~~i~~n~~e~~-EvRiaA~~~Lm~t 541 (1056)
T 1lsh_A 507 --------------------KRDPRKVQEIVLPIFLNVAIKS-ELRIRSCIVFFES 541 (1056)
T ss_dssp --------------------GTCHHHHHHHHHHHHHCTTSCH-HHHHHHHHHHHHT
T ss_pred --------------------hhchHHHHHHHHHHhcCCCCCh-HHHHHHHHHHHHH
Confidence 1246778888888887777765 4799998877643
No 111
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=53.93 E-value=1.8e+02 Score=29.93 Aligned_cols=149 Identities=13% Similarity=0.117 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHhhhcCCchhhHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHhcCh
Q 001381 198 LVMRILGFCKDYLSNAGPMRTIAGLLLAKLLTRPDMPTAFASFVEWTHEVLSSVTDDVMNHFRLLGVVEALAAIFKAGGR 277 (1089)
Q Consensus 198 l~~rIl~l~~~yL~~~~k~r~~Aa~LLsrl~tR~D~~~~l~~f~~w~~~~l~~~~~~~~~~~~~~G~L~~l~~ilk~~~~ 277 (1089)
..++|.+.+.. ..|.+| |..+-+=|..++++|.|+.|..+.+..... +...+.-.+....+++. -+.
T Consensus 12 yf~~It~a~~~------~~r~~a---L~sL~~D~gL~~LlPyf~~fI~~~v~~nl~---~l~~L~~lm~~~~ALl~-N~~ 78 (196)
T 4atg_A 12 YFDKILSMIKS------DMKDIA---IECLEKESGLQQLVPYFIQHISELILKSFK---EAEVLKTCIALYFSLIK-NKH 78 (196)
T ss_dssp HHHHHHHHHTS------TTHHHH---HHHHHHCSSCTTTHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHH-CTT
T ss_pred HHHHHHHHHHh------HHHHHH---HHHHhcCCChhhhHHHHHHHHHHHHHhccC---CHHHHHHHHHHHHHHHc-CCC
Confidence 34555555544 346555 666666688888899999999887754322 12444445555555555 344
Q ss_pred hhhhhhhHHHHHhhhhhhccCcCCCchhHHHHHHHHHHHhhhcccCCCCccccccccccccccccccccccccccccCcc
Q 001381 278 KVLLDVIPVVWNDASTMLKSGSAARSPLLRKYLMKLTQRLGLTCLPRCTSAWRYVIRTSSLGENMSSRAAFREIDQCDHS 357 (1089)
Q Consensus 278 ~~l~~~~~~i~~~~~~l~~~~~~~~~~l~rKl~~Kl~~rlal~~L~pr~~~wrY~rg~rsL~~nl~~~~~~~~~~~~~~~ 357 (1089)
-.+.||+..+...+...--+.....+ .+|.+.-+++..|...| ...
T Consensus 79 l~lepYlH~LipsvLtCll~k~l~~~-~LRd~AA~lL~~I~~~~----------~~~----------------------- 124 (196)
T 4atg_A 79 VFIDPYLHQILPSLLTCVIGKSIVDD-DVRKMSADIVKYIYDTY----------SRS----------------------- 124 (196)
T ss_dssp CCCGGGHHHHHHHHHHHHHCTTCCCH-HHHHHHHHHHHHHHHHH----------TTT-----------------------
T ss_pred CChHHHHHHHHHHHHHHHHhcccCHH-HHHHHHHHHHHHHHHHh----------Ccc-----------------------
Confidence 67899999998833222212212212 68888888888876332 210
Q ss_pred ccccccccccCCCCCCCCCCchHHHHHHHHHHHhhcCC--CChhHHHHHHHHHHHHHh
Q 001381 358 VVDSLKSEQNRNCPEDEGMDVPDILEEIIEILLSGLRD--TDTVVRWSAAKGIGRITS 413 (1089)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~v~e~vE~iI~~ll~~L~d--~dt~vR~saAK~l~rI~~ 413 (1089)
.+..-..|+..+...+.| +....+|.|-.||+.+..
T Consensus 125 --------------------y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG~ 162 (196)
T 4atg_A 125 --------------------YKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILSK 162 (196)
T ss_dssp --------------------STTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCH
T ss_pred --------------------CchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhHH
Confidence 134456777788888765 567788888888876543
No 112
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=52.98 E-value=1.5e+02 Score=31.20 Aligned_cols=103 Identities=17% Similarity=0.013 Sum_probs=64.3
Q ss_pred HHHhcCCCcH--HHHHHHHHHHHHHHHHhhhccCcch--hhhhHHHHHHHhCCCChhhhhhHHHHhhccchHhh--hhhH
Q 001381 722 LNENLRHPNS--QIQNAAVKALKPFVQTYMVAADSGV--VGGISLKYMEQLTDPNPAIRRGSALALGVLPYELL--ANSW 795 (1089)
Q Consensus 722 L~~~L~~~~~--~V~~aAa~Al~~l~~~y~~~~~~~~--~~~~v~~~~~~L~s~~~~~r~G~a~aLG~lp~~~~--~~~~ 795 (1089)
+-..|.++++ ++|..|+.++..+...-.. .... ....++.+++.|++.++..+..++-||+.+-..-. +..+
T Consensus 13 lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~--~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~I 90 (233)
T 3tt9_A 13 AVSMLEADHMLPSRISAAATFIQHECFQKSE--ARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEV 90 (233)
T ss_dssp HHHTCCSSCCCHHHHHHHHHHHHHHHHHCHH--HHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHhCCCCchHHHHHHHHHHHHHHHcCCcH--HHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3345677777 8898888888766542100 0111 14568999999999999999999999988854211 1111
Q ss_pred --HHHHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHH
Q 001381 796 --RDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVC 831 (1089)
Q Consensus 796 --~~i~~~L~~~~~~~~~~~~~d~e~R~~al~sL~~i~ 831 (1089)
...+..|+..+. ...+.+.|.+|..+|-.+.
T Consensus 91 ~~~GaI~~Lv~lL~-----~~~~~~~~e~a~~aL~nLS 123 (233)
T 3tt9_A 91 AELNGVPRLLQVLK-----QTRDLETKKQITGLLWNLS 123 (233)
T ss_dssp HHTTHHHHHHHHHH-----HCCCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHc-----cCCCHHHHHHHHHHHHHHH
Confidence 113344444442 1236789999988887764
No 113
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=51.75 E-value=2.7e+02 Score=33.76 Aligned_cols=68 Identities=18% Similarity=0.144 Sum_probs=47.9
Q ss_pred HhcCCCchhhHHHHHHHHHHhcccCCCCCCccceecccccchhhhHHHHHHHHHHHHhhhcchHHHHHHHHhCccCCCCH
Q 001381 522 ACYDREVNCRRAAAAAFQENVGRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNKICHWDK 601 (1089)
Q Consensus 522 alfD~e~~iRRaAsAAlQE~vGR~g~~p~GI~il~~~d~~~v~~r~~a~~~va~~va~~~~Y~~~li~~Ll~~~l~h~D~ 601 (1089)
-+-.++.+.|.+|..|+.+++. +. ..|+ .+ -.+.++.-++...+.+.|.
T Consensus 42 ~L~S~~~~~r~~A~~al~~l~~--~~----------------~~~~--------l~-----~~~~~v~~ll~~lL~D~~~ 90 (684)
T 4gmo_A 42 DLKSPDAKSRTTAAGAIANIVQ--DA----------------KCRK--------LL-----LREQVVHIVLTETLTDNNI 90 (684)
T ss_dssp HHSSSCCSHHHHHHHHHHHHTT--SH----------------HHHH--------HH-----HHTTHHHHHHHTTTTCSCH
T ss_pred HcCCCCHHHHHHHHHHHHHHHc--Cc----------------HHHH--------HH-----HHcCCHHHHHHHHcCCCCH
Confidence 3567899999999999999852 21 0111 00 1123555566667889999
Q ss_pred HHHHHHHHHHHHHHccCch
Q 001381 602 VLRELAAEALSALVKYDPE 620 (1089)
Q Consensus 602 ~iR~laa~aL~~L~~~~~~ 620 (1089)
++|.-|+.||++|+...+.
T Consensus 91 ~Vr~~A~gaLrnL~~~~g~ 109 (684)
T 4gmo_A 91 DSRAAGWEILKVLAQEEEA 109 (684)
T ss_dssp HHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHHHHhhcCc
Confidence 9999999999999976543
No 114
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=44.75 E-value=39 Score=36.01 Aligned_cols=43 Identities=19% Similarity=0.095 Sum_probs=30.5
Q ss_pred CccCCCCHHHHHHHHHHHHHHHccCchhhHHHHHHHhccccCCCChhhHHHHHHHHH
Q 001381 594 NKICHWDKVLRELAAEALSALVKYDPEYFANFILEKLTPFTLSTDLCTRHGATLAAG 650 (1089)
Q Consensus 594 ~~l~h~D~~iR~laa~aL~~L~~~~~~~~~~~vlp~Ll~~l~~~d~~~RHG~lLala 650 (1089)
..+.+.|..+|.-++..+ + .+.+...+.+.++.+|..+..+++
T Consensus 177 ~ll~D~d~~VR~aaa~~l-------~-------~~~L~~Ll~D~d~~VR~~aa~~l~ 219 (244)
T 1lrv_A 177 LMTQDPEPEVRRIVASRL-------R-------GDDLLELLHDPDWTVRLAAVEHAS 219 (244)
T ss_dssp GSTTCSSHHHHHHHHHHC-------C-------GGGGGGGGGCSSHHHHHHHHHHSC
T ss_pred HHHcCCCHHHHHHHHHhC-------C-------HHHHHHHHcCCCHHHHHHHHHcCC
Confidence 455688888888888763 1 134556678888888888777654
No 115
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=43.89 E-value=1.3e+02 Score=34.17 Aligned_cols=116 Identities=15% Similarity=0.157 Sum_probs=72.6
Q ss_pred cchHHHHHHHHhCccCCCCHHHHHHHHHHHHHHHccCchhhHHHHHHHhccccCCCChhhHHHHHHHHHHHHHHHhcccc
Q 001381 582 GYLYPFVDELLYNKICHWDKVLRELAAEALSALVKYDPEYFANFILEKLTPFTLSTDLCTRHGATLAAGEVVLALCKYDY 661 (1089)
Q Consensus 582 ~Y~~~li~~Ll~~~l~h~D~~iR~laa~aL~~L~~~~~~~~~~~vlp~Ll~~l~~~d~~~RHG~lLalaevl~~l~~~~~ 661 (1089)
.....+++.++. ...+.+.++|+..+.-|.+.+..+.+.+ ..+++.|...+.+.|..+.-.++.+.+.+....-+...
T Consensus 59 sLl~~fl~~il~-f~~d~~~~vRk~~a~FieEa~~~~~el~-~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~ 136 (386)
T 3o2t_A 59 TLLDNFLDEIIA-FQADKSIEVRKFVIGFIEEACKRDIELL-LKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMV 136 (386)
T ss_dssp GGGGGGHHHHHG-GGGCSCHHHHHHHHHHHHHHHHHCGGGH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-hccCCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555554 3446689999999999999999888875 66788888777777877777788888887744322211
Q ss_pred --cCC----hhHHHHHHhhhHHHHhhhhccCcchHHHHHHHHHHHHH
Q 001381 662 --ALP----ADKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIEC 702 (1089)
Q Consensus 662 --~~~----~~~~~~i~~i~~~~~~~~l~r~~~gelir~a~~~lI~~ 702 (1089)
+.. ++..+.+..+-..+.. .+. .+.+=+|-.+.+|++.
T Consensus 137 ~~~~~~~~~e~~W~~m~~lK~~Il~--~~d-s~n~GVrl~aiKFle~ 180 (386)
T 3o2t_A 137 KSRVISELQEACWDMVSAMAGDIIL--LLD-SDNDGIRTHAIKFVEG 180 (386)
T ss_dssp HC-CCCHHHHHHHHHHHHHHHHHHH--GGG-CSSHHHHHHHHHHHHH
T ss_pred cCCCcchhHHHHHHHHHHHHHHHHH--Hhc-cCCcchHHHHHHHHHH
Confidence 111 2333444444444432 122 1345566677777765
No 116
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=37.82 E-value=43 Score=40.96 Aligned_cols=68 Identities=29% Similarity=0.260 Sum_probs=42.8
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhCcc-----hhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHH
Q 001381 382 LEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSS-----LSEEVFSSVLELFSPGEGDGSWHGGCLALAELA 451 (1089)
Q Consensus 382 vE~iI~~ll~~L~d~dt~vR~saAK~l~rI~~~L~~~-----~a~~vi~~il~~l~~~~~~~~wHg~~LaLael~ 451 (1089)
-+.-|--+++.|.+.|+..|..|+-+|+.|+. ++. ..+.+|..++..+-.+.+....+.++=+|.-|+
T Consensus 32 ~~~~i~Pll~~L~S~~~~~r~~A~~al~~l~~--~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~ 104 (684)
T 4gmo_A 32 REDKILPVLKDLKSPDAKSRTTAAGAIANIVQ--DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLA 104 (684)
T ss_dssp HHHTTHHHHHHHSSSCCSHHHHHHHHHHHHTT--SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHcCCCCHHHHHHHHHHHHHHHc--CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 33444446677899999999999999999985 333 245677777765433333333444444444443
No 117
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=33.77 E-value=4.2e+02 Score=30.92 Aligned_cols=240 Identities=13% Similarity=0.206 Sum_probs=0.0
Q ss_pred hHHHHHHHH--HHHhhcCC-CChhHHHHHHHHHHHHHhhhCcchhhhHHHHHHhhcCCCCCCcch-HHHHHHHHHHHhcC
Q 001381 379 PDILEEIIE--ILLSGLRD-TDTVVRWSAAKGIGRITSCLTSSLSEEVFSSVLELFSPGEGDGSW-HGGCLALAELARRG 454 (1089)
Q Consensus 379 ~e~vE~iI~--~ll~~L~d-~dt~vR~saAK~l~rI~~~L~~~~a~~vi~~il~~l~~~~~~~~w-Hg~~LaLael~~~~ 454 (1089)
.+.++..++ |++..|.. .++..++.++..+..+... +++...+ | |++.+.
T Consensus 160 ~~~l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~--~~~R~~f----------------~~~~~~~~-------- 213 (480)
T 1ho8_A 160 VKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVI--PEYRDVI----------------WLHEKKFM-------- 213 (480)
T ss_dssp HHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTS--HHHHHHH----------------HTTHHHHH--------
T ss_pred HhHHHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcc--hhHHHHH----------------HHcccchh--------
Q ss_pred CCCCCcccchHHHHHHhhhhhc-----cccccCCChhhhhhhhHHHHHhhhccCccchhHHHHH---HHHHHHHHHhcCC
Q 001381 455 LLLPSSLPKVVPVIVKALHYDI-----RRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQ---IAPHLLTVACYDR 526 (1089)
Q Consensus 455 ll~p~~l~~il~~i~~~L~f~~-----r~~~~svG~~VRDAacfi~WslaR~~~~~~l~~~~~~---l~~~Ll~~alfD~ 526 (1089)
+.++.++..++.=.. ...+..+|-|+---++|++|-+ +|.++....+... .+..|+...---.
T Consensus 214 -------~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlL--SF~~~~~~~l~~~~i~~~~~L~~i~k~s~ 284 (480)
T 1ho8_A 214 -------PTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLL--TFNPVFANELVQKYLSDFLDLLKLVKITI 284 (480)
T ss_dssp -------HHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHH--TTSHHHHHHHHTTSHHHHHHHHHHHHHCC
T ss_pred -------HHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHH--HcCHHHHHHHHhcchHHHHHHHHHHHhhc
Q ss_pred CchhhHHHHHHHHHHhccc--------------CCCCCCccceeccccc------chhhhHHHHHHHHHHHHhhhcchHH
Q 001381 527 EVNCRRAAAAAFQENVGRQ--------------GNYPHGIDIVNTADYF------SLSSRVYSYLHVAVFIAQYEGYLYP 586 (1089)
Q Consensus 527 e~~iRRaAsAAlQE~vGR~--------------g~~p~GI~il~~~d~~------~v~~r~~a~~~va~~va~~~~Y~~~ 586 (1089)
-.=|=|-+.|+|.-++... |+.|.=+..++.-.|- .+.....-..+.-..+..|++|...
T Consensus 285 KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~E 364 (480)
T 1ho8_A 285 KEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAE 364 (480)
T ss_dssp SHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred cchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccchHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHH
Q ss_pred HHHHHHhCccCCCC----------------------------------------HHHHHHHHHHHHHHHccCch--hhHH
Q 001381 587 FVDELLYNKICHWD----------------------------------------KVLRELAAEALSALVKYDPE--YFAN 624 (1089)
Q Consensus 587 li~~Ll~~~l~h~D----------------------------------------~~iR~laa~aL~~L~~~~~~--~~~~ 624 (1089)
+-...+...-.|-+ +.+-..|+.=+|++++.+|. .+..
T Consensus 365 l~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~ 444 (480)
T 1ho8_A 365 LDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLD 444 (480)
T ss_dssp HHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHH
T ss_pred HhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHH
Q ss_pred H--HHHHhccccCCCChhhHHHHHHHHHHHH
Q 001381 625 F--ILEKLTPFTLSTDLCTRHGATLAAGEVV 653 (1089)
Q Consensus 625 ~--vlp~Ll~~l~~~d~~~RHG~lLalaevl 653 (1089)
. .=..+.+.+...|.++|.-+++|+.+++
T Consensus 445 ~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 445 KTGGKADIMELLNHSDSRVKYEALKATQAII 475 (480)
T ss_dssp HHSHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred HcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
No 118
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=29.68 E-value=2.4e+02 Score=30.83 Aligned_cols=73 Identities=10% Similarity=0.027 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhC----cchhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHHhc
Q 001381 381 ILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLT----SSLSEEVFSSVLELFSPGEGDGSWHGGCLALAELARR 453 (1089)
Q Consensus 381 ~vE~iI~~ll~~L~d~dt~vR~saAK~l~rI~~~L~----~~~a~~vi~~il~~l~~~~~~~~wHg~~LaLael~~~ 453 (1089)
..+.|++.+...+.+...++|-++|--+=.++-.+- .+...+++..+...++...+..+.++.+.||+.|...
T Consensus 188 ~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~ 264 (304)
T 3ebb_A 188 QRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTLISD 264 (304)
T ss_dssp THHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhC
Confidence 457788888888888899999999987776666542 2445666666666666556678899999999999864
No 119
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=28.71 E-value=6.1e+02 Score=28.21 Aligned_cols=64 Identities=17% Similarity=0.144 Sum_probs=48.2
Q ss_pred chHHHHHHHHhCccCCCCHHHHHHHHHHHHHHHccCch-------hhH--HHHHHHhccccCCCChhhHHHHHH
Q 001381 583 YLYPFVDELLYNKICHWDKVLRELAAEALSALVKYDPE-------YFA--NFILEKLTPFTLSTDLCTRHGATL 647 (1089)
Q Consensus 583 Y~~~li~~Ll~~~l~h~D~~iR~laa~aL~~L~~~~~~-------~~~--~~vlp~Ll~~l~~~d~~~RHG~lL 647 (1089)
|...++..|+. .+..-|.+.|+-++.-+..+.+..+. |+. ..++..|+.+....|...-.|.+|
T Consensus 75 ~~~dll~~Li~-~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G~mL 147 (341)
T 1upk_A 75 YNSGLLSTLVA-DLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIML 147 (341)
T ss_dssp HHHSHHHHHHH-TGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHH
T ss_pred HHhCHHHHHHH-hcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHHHHH
Confidence 55667777775 78899999999999999999886532 333 457777777777777777776654
No 120
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=28.31 E-value=1e+03 Score=30.33 Aligned_cols=145 Identities=11% Similarity=0.045 Sum_probs=85.5
Q ss_pred hhhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhcc---CcchhhhhHHHHHHHhCCCChhhhhhHHHHhhccch
Q 001381 712 EKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAA---DSGVVGGISLKYMEQLTDPNPAIRRGSALALGVLPY 788 (1089)
Q Consensus 712 ~~~~~~~~~~L~~~L~~~~~~V~~aAa~Al~~l~~~y~~~~---~~~~~~~~v~~~~~~L~s~~~~~r~G~a~aLG~lp~ 788 (1089)
.+.+..+..++...-...++.++..|.-|+..+...|+... +.+.+..+.+.+.+.+++.+.....-+..|||.+..
T Consensus 390 ~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~ 469 (1056)
T 1lsh_A 390 RESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ 469 (1056)
T ss_dssp HHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC
Confidence 34555555544322223567788899999999999886532 122234455555555656667778888999998853
Q ss_pred HhhhhhHHHHHHHHhhhccc-cCCCCCCCHHHHHHHHHHHHHHHhhhccccccccccCCcchhhhhhhhHHHHHHHHHHh
Q 001381 789 ELLANSWRDVLLKLCSCCLI-EENPEDRDTEARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKA 867 (1089)
Q Consensus 789 ~~~~~~~~~i~~~L~~~~~~-~~~~~~~d~e~R~~al~sL~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~ 867 (1089)
.. .++.|...+.. ...........|+.|+.||..+.. .....+-+.|+.-
T Consensus 470 p~-------~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~----------------------~~p~~v~~il~~i 520 (1056)
T 1lsh_A 470 PN-------SIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAK----------------------RDPRKVQEIVLPI 520 (1056)
T ss_dssp GG-------GHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGG----------------------TCHHHHHHHHHHH
T ss_pred hh-------HHHHHHHhhcCccccccccchHHHHHHHHHHHHhhh----------------------hchHHHHHHHHHH
Confidence 21 23333333211 001122345788999999977532 1223456666666
Q ss_pred cccCCCCCCCCcchHHHHHHHHHH
Q 001381 868 LDDYSVDNRGDVGSWVREAAVDGL 891 (1089)
Q Consensus 868 L~DYT~D~RGDVGSwVR~aa~~~l 891 (1089)
+.|.+- -+-||.+|...|
T Consensus 521 ~~n~~e------~~EvRiaA~~~L 538 (1056)
T 1lsh_A 521 FLNVAI------KSELRIRSCIVF 538 (1056)
T ss_dssp HHCTTS------CHHHHHHHHHHH
T ss_pred hcCCCC------ChHHHHHHHHHH
Confidence 666443 367898888766
No 121
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=23.60 E-value=8.3e+02 Score=27.57 Aligned_cols=217 Identities=12% Similarity=0.097 Sum_probs=118.1
Q ss_pred CChhHHHHHHHHHHHhhhcCCchhhHHHHHHHHH-hcCCChHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHH
Q 001381 194 EPAPLVMRILGFCKDYLSNAGPMRTIAGLLLAKL-LTRPDMPTAFASFVEWTHEVLSSVTDDVMNHFRLLGVVEALAAIF 272 (1089)
Q Consensus 194 ~~~~l~~rIl~l~~~yL~~~~k~r~~Aa~LLsrl-~tR~D~~~~l~~f~~w~~~~l~~~~~~~~~~~~~~G~L~~l~~il 272 (1089)
...+..+||.++...--. .+.......+-=++- +..+|- .+|++|+...++..... +. .++. =+..|+...+
T Consensus 19 ~~~~~~~~v~~lln~A~~-~~~~~Kl~~L~q~~EL~l~~dp-sLl~~fl~~il~f~~d~---~~-~vRk-~~a~FieEa~ 91 (386)
T 3o2t_A 19 SHMTTSERVVDLLNQAAL-ITNDSKITVLKQVQELIINKDP-TLLDNFLDEIIAFQADK---SI-EVRK-FVIGFIEEAC 91 (386)
T ss_dssp --CCHHHHHHHHHHHHHH-CCSTHHHHHHHHHHHHHHTTCG-GGGGGGHHHHHGGGGCS---CH-HHHH-HHHHHHHHHH
T ss_pred ccccHHHHHHHHHHhhhc-cChHHHHHHHHHHHHHHhccCH-HHHHHHHHHHHHhccCC---cH-HHHH-HHHHHHHHHH
Confidence 344677888888777533 222222222222222 233333 34677777666544322 11 1222 3456777777
Q ss_pred HhcChhhhhhhhHHHHHhhhhhhccCcCCCchhHHHHHHHHHHHhhhcccCCCCcccccccccccccccccccccccccc
Q 001381 273 KAGGRKVLLDVIPVVWNDASTMLKSGSAARSPLLRKYLMKLTQRLGLTCLPRCTSAWRYVIRTSSLGENMSSRAAFREID 352 (1089)
Q Consensus 273 k~~~~~~l~~~~~~i~~~~~~l~~~~~~~~~~l~rKl~~Kl~~rlal~~L~pr~~~wrY~rg~rsL~~nl~~~~~~~~~~ 352 (1089)
+. +.+. +..+.+....+.... ++.+.|-.+.....+.-..++ |-.. + .
T Consensus 92 ~~-~~el----~~~~l~~L~~LL~d~----d~~V~K~~I~~~tslYpl~f~-----~i~~--------~----~------ 139 (386)
T 3o2t_A 92 KR-DIEL----LLKLIANLNMLLRDE----NVNVVKKAILTMTQLYKVALQ-----WMVK--------S----R------ 139 (386)
T ss_dssp HH-CGGG----HHHHHHHHHHHHTCS----SHHHHHHHHHHHHHHHHHHHH-----HHHH--------C-----------
T ss_pred HH-HHHH----HHHHHHHHHHHHcCC----CHHHHHHHHHHHHHHHHHHHH-----HHhc--------C----C------
Confidence 72 2222 333333222222223 566777777666554422221 1111 0 0
Q ss_pred ccCccccccccccccCCCCCCCCCCchHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhh-----------------
Q 001381 353 QCDHSVVDSLKSEQNRNCPEDEGMDVPDILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCL----------------- 415 (1089)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~v~e~vE~iI~~ll~~L~d~dt~vR~saAK~l~rI~~~L----------------- 415 (1089)
..++...+.++.+..+-+.++..+.+....||-.+.|=+.+++-..
T Consensus 140 -----------------~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~qS~~~~d~~~p~~~~~d~ 202 (386)
T 3o2t_A 140 -----------------VISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTLSPRMADSEIPRRQEHDI 202 (386)
T ss_dssp -----------------CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHTSCCCTTCCCCGGGTTSC
T ss_pred -----------------CcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhCCCCCCcccccccCCCC
Confidence 0000112457889999999999888899999999999999988422
Q ss_pred -----Ccc-----------hhhhHHHHHHhhcCCCCC-CcchHHHHHHHHHHHhcCCCCCCcccchHHHHH
Q 001381 416 -----TSS-----------LSEEVFSSVLELFSPGEG-DGSWHGGCLALAELARRGLLLPSSLPKVVPVIV 469 (1089)
Q Consensus 416 -----~~~-----------~a~~vi~~il~~l~~~~~-~~~wHg~~LaLael~~~~ll~p~~l~~il~~i~ 469 (1089)
|.. -|..+++.+++.+..... ....-+.+=.|+-+++.+ |...+.|++.+.
T Consensus 203 SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~R---P~~~~rIl~aL~ 270 (386)
T 3o2t_A 203 SLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQR---PMFMSEVIQAYE 270 (386)
T ss_dssp CGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHS---GGGHHHHHHHHH
T ss_pred CHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHhc---HHHHHHHHHHHH
Confidence 111 145688888888864322 222334555677788887 677788888774
No 122
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=23.16 E-value=1.1e+03 Score=29.05 Aligned_cols=235 Identities=13% Similarity=0.093 Sum_probs=134.7
Q ss_pred hHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhCcchh-----hhHHHHHHhhcCCCCCCcchHHHHHH-HHHHHh
Q 001381 379 PDILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSLS-----EEVFSSVLELFSPGEGDGSWHGGCLA-LAELAR 452 (1089)
Q Consensus 379 ~e~vE~iI~~ll~~L~d~dt~vR~saAK~l~rI~~~L~~~~a-----~~vi~~il~~l~~~~~~~~wHg~~La-Lael~~ 452 (1089)
|+.+++|.+.++..+. + -++..+++-+...||..+- ..-++.++..-+.......|.+.++. +|.+++
T Consensus 126 ~~~~~eil~e~~p~l~-p-----~s~~~~~~~l~~fLP~~~~~~~~~~~w~~~~f~lW~~~~~s~~wd~~~~~l~~rla~ 199 (799)
T 1vsy_4 126 ESLLVDTMNFLLSSLA-P-----STMMAVMPIVTSVVPYHYHIHSKIIDYFPFCYSIWSSVSANVAIDTHMYDFVGSISK 199 (799)
T ss_dssp GGGHHHHHHHHGGGCS-T-----TTHHHHHHHHHHHSCCCCCSSCCSGGGHHHHHHHBTTBCSCHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhcC-c-----hhHHHHHHHHHHHcCCCCCchhhhhhhHHHHHHHHHhcccCchHHHHHHHHHHHHHH
Confidence 5678888888888884 2 3777899999999986543 33567777766555555788875554 355555
Q ss_pred cC--------------CC-CCCc-------ccchHHHHHHhhhhhccccccCCChhhhhhhhHHHHHhhhccCccchhHH
Q 001381 453 RG--------------LL-LPSS-------LPKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNI 510 (1089)
Q Consensus 453 ~~--------------ll-~p~~-------l~~il~~i~~~L~f~~r~~~~svG~~VRDAacfi~WslaR~~~~~~l~~~ 510 (1089)
.+ .+ ..++ ++.++..+++.+. +.+.. ....=.|-.++|++.-.. ++....+
T Consensus 200 ~~~~~~~~~~~~~~~g~idw~~~gift~~q~~~iFt~~lr~l~-----~~~~~-~~~~~~a~~IV~sl~~~~-~~~~~~~ 272 (799)
T 1vsy_4 200 DVHNKILSSEHEKDVVGVEFGEFGIFTDDQMTFMFNRLQGHLR-----TDGQI-HSYSRTVKPFVYAINGSK-KDRFFEK 272 (799)
T ss_dssp HHHHHHSSSCSCTTCCCSCCCSSTTCCHHHHHHHHHHHHHHHH-----TTCCC-SSHHHHHHHHHTTCCTTS-CTTTHHH
T ss_pred HhhhhhcccccccCCCccchHhhCcccHHHHHHHHHHHHHhcc-----CcCCc-cchHHHHHHHHHHcCCCC-chHHHHH
Confidence 42 21 2234 7888888887775 22222 233345666666666432 2334457
Q ss_pred HHHHHHHHHHHHhcCCCchhhHHH------HHHHHHHhcccC--------CCCCCccceecccccchhhhHHHHHHHHHH
Q 001381 511 LEQIAPHLLTVACYDREVNCRRAA------AAAFQENVGRQG--------NYPHGIDIVNTADYFSLSSRVYSYLHVAVF 576 (1089)
Q Consensus 511 ~~~l~~~Ll~~alfD~e~~iRRaA------sAAlQE~vGR~g--------~~p~GI~il~~~d~~~v~~r~~a~~~va~~ 576 (1089)
++.++..+ .+-|.|.-+=+-.. .+-.++.+.|.. .+|....+- ..
T Consensus 273 L~~Li~~i--esy~HPSN~G~Wt~~L~~Fl~~L~~~f~kR~~~Er~~~~~~~p~~~~Lt---------~~---------- 331 (799)
T 1vsy_4 273 LVSLAKAI--ETFIHPSNNGFWTKPNAKFVHAFIKSYHGRVKYEEDICARGVTNGICLT---------SF---------- 331 (799)
T ss_dssp HHHHHHHH--HHHHSTTCCSTTHHHHHHHHHHHHHHHHHHHHHHTTTTTTTCCCSSSCC---------HH----------
T ss_pred HHHHHHHH--hcccCCCCCCccHHHHHHHHHHHHHHHHHHHHHhhccccCCCchhhcCC---------HH----------
Confidence 77776653 66677765322211 111112222210 011100000 00
Q ss_pred HHhhhcchHHHHHHHHhCccCCCCHHHHHHHHHHHHHHHccCc---hhhHHHHHHHhccccCCCChhhHHHHHHHHH
Q 001381 577 IAQYEGYLYPFVDELLYNKICHWDKVLRELAAEALSALVKYDP---EYFANFILEKLTPFTLSTDLCTRHGATLAAG 650 (1089)
Q Consensus 577 va~~~~Y~~~li~~Ll~~~l~h~D~~iR~laa~aL~~L~~~~~---~~~~~~vlp~Ll~~l~~~d~~~RHG~lLala 650 (1089)
....+.+.+.+- +..++.+.|..+...+..+|+.|+-..| +.+.+.++.++-+.+.+.=+...|-...++.
T Consensus 332 --~~~~fV~~l~p~-~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~ 405 (799)
T 1vsy_4 332 --CHEEIVEIFLNI-ISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLK 405 (799)
T ss_dssp --HHHHHHHHHHHH-HHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHH
T ss_pred --HHHHHHHHHHHH-HHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHH
Confidence 001122222222 2247779999999999999999999888 8877777777766666633455565544433
No 123
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=20.97 E-value=1.1e+02 Score=32.32 Aligned_cols=40 Identities=20% Similarity=-0.037 Sum_probs=24.5
Q ss_pred hhhhhhhhHHHHHhhhccCccchhHHHHHHHHHHHHHHhcCCCchhhHHHHHH
Q 001381 485 SHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAAAAA 537 (1089)
Q Consensus 485 ~~VRDAacfi~WslaR~~~~~~l~~~~~~l~~~Ll~~alfD~e~~iRRaAsAA 537 (1089)
..|+|...--++-|.+.. | .++...+-|++..+|++|...
T Consensus 34 ~c~~~~~~~ri~~~~~~~-p------------~l~~~ll~d~~~~VR~~AA~~ 73 (244)
T 1lrv_A 34 ACVAVESGRQIDRFFRNN-P------------HLAVQYLADPFWERRAIAVRY 73 (244)
T ss_dssp BCSSSSCHHHHHHHHHHC-G------------GGGGGGTTCSSHHHHHHHHTT
T ss_pred hHhhcCcHHHHHHHHcCC-H------------HHHHHHhcCCCHHHHHHHHHh
Confidence 456665555554444432 2 234455689999999987774
Done!