Query 001382
Match_columns 1089
No_of_seqs 410 out of 1834
Neff 5.1
Searched_HMMs 46136
Date Thu Mar 28 23:23:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001382.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001382hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02436 cellulose synthase A 100.0 0E+00 0E+00 2893.3 83.2 1085 1-1089 1-1094(1094)
2 PLN02400 cellulose synthase 100.0 0E+00 0E+00 2877.2 82.1 1066 1-1088 1-1085(1085)
3 PLN02638 cellulose synthase A 100.0 1E-312 3E-317 2773.7 82.1 1050 23-1088 4-1079(1079)
4 PLN02189 cellulose synthase 100.0 6E-304 1E-308 2692.5 82.7 1030 1-1088 1-1040(1040)
5 PLN02915 cellulose synthase A 100.0 2E-301 5E-306 2670.3 77.9 999 31-1088 10-1044(1044)
6 PLN02195 cellulose synthase A 100.0 9E-285 2E-289 2515.6 78.0 967 33-1088 3-977 (977)
7 PLN02248 cellulose synthase-li 100.0 5E-251 1E-255 2234.9 72.1 951 4-1076 89-1125(1135)
8 PF03552 Cellulose_synt: Cellu 100.0 6E-218 1E-222 1902.6 48.2 710 368-1082 1-720 (720)
9 PLN02190 cellulose synthase-li 100.0 2E-201 4E-206 1765.9 61.5 725 270-1068 7-756 (756)
10 PLN02893 Cellulose synthase-li 100.0 1E-192 3E-197 1698.9 63.5 706 269-1066 9-728 (734)
11 TIGR03030 CelA cellulose synth 100.0 2.1E-66 4.6E-71 634.0 47.1 495 289-1046 57-568 (713)
12 PRK11498 bcsA cellulose syntha 100.0 3.9E-66 8.5E-71 632.6 44.2 472 291-1041 189-673 (852)
13 PF14569 zf-UDP: Zinc-binding 100.0 4.1E-45 8.9E-50 322.1 4.5 80 28-107 1-80 (80)
14 PRK05454 glucosyltransferase M 100.0 4.3E-36 9.2E-41 364.2 40.8 362 287-886 40-420 (691)
15 cd04191 Glucan_BSP_ModH Glucan 100.0 1.7E-33 3.7E-38 306.4 21.1 182 533-838 67-253 (254)
16 COG1215 Glycosyltransferases, 100.0 2.8E-30 6.1E-35 296.0 27.3 233 365-842 53-290 (439)
17 PRK14583 hmsR N-glycosyltransf 100.0 6.5E-29 1.4E-33 289.4 32.3 232 363-843 72-307 (444)
18 TIGR03111 glyc2_xrt_Gpos1 puta 100.0 2.9E-27 6.2E-32 275.6 32.0 288 362-894 45-341 (439)
19 PRK11204 N-glycosyltransferase 100.0 7.2E-27 1.6E-31 268.9 33.2 236 362-843 50-286 (420)
20 PRK14716 bacteriophage N4 adso 99.9 3.7E-25 8E-30 261.2 30.8 265 364-868 64-355 (504)
21 cd06421 CESA_CelA_like CESA_Ce 99.9 1.1E-24 2.3E-29 227.7 18.6 229 366-840 1-234 (234)
22 PRK11234 nfrB bacteriophage N4 99.9 5.6E-24 1.2E-28 260.1 27.9 170 549-841 132-334 (727)
23 cd06437 CESA_CaSu_A2 Cellulose 99.9 2.6E-24 5.7E-29 227.0 20.6 228 366-836 1-232 (232)
24 cd06427 CESA_like_2 CESA_like_ 99.9 5.8E-23 1.3E-27 219.0 20.0 233 366-842 1-236 (241)
25 cd06435 CESA_NdvC_like NdvC_li 99.9 9.1E-23 2E-27 214.9 21.2 173 535-842 58-234 (236)
26 PF13641 Glyco_tranf_2_3: Glyc 99.9 6.7E-23 1.4E-27 214.5 7.1 224 366-835 1-228 (228)
27 PRK15489 nfrB bacteriophage N4 99.8 6.1E-19 1.3E-23 214.3 29.4 171 548-840 139-341 (703)
28 cd04190 Chitin_synth_C C-termi 99.8 9.9E-21 2.1E-25 203.6 10.7 52 785-838 190-243 (244)
29 TIGR03472 HpnI hopanoid biosyn 99.8 5.4E-19 1.2E-23 202.1 24.3 235 363-836 38-272 (373)
30 cd04192 GT_2_like_e Subfamily 99.8 5.8E-19 1.3E-23 183.2 16.7 226 370-835 1-229 (229)
31 cd02520 Glucosylceramide_synth 99.8 1.2E-18 2.6E-23 180.2 15.7 123 549-834 72-194 (196)
32 cd06434 GT2_HAS Hyaluronan syn 99.8 1.4E-17 3.1E-22 174.9 18.0 58 549-615 63-120 (235)
33 COG2943 MdoH Membrane glycosyl 99.7 8.5E-15 1.8E-19 168.1 37.0 209 534-875 213-428 (736)
34 cd06439 CESA_like_1 CESA_like_ 99.7 7.7E-17 1.7E-21 171.5 18.6 127 362-614 25-151 (251)
35 TIGR03469 HonB hopene-associat 99.7 8E-16 1.7E-20 176.9 24.9 133 362-608 36-169 (384)
36 cd02525 Succinoglycan_BP_ExoA 99.6 5.6E-15 1.2E-19 155.4 19.2 54 787-842 180-233 (249)
37 PF13632 Glyco_trans_2_3: Glyc 99.6 1.4E-15 3E-20 156.5 12.9 138 570-836 1-143 (193)
38 cd06436 GlcNAc-1-P_transferase 99.5 7.5E-14 1.6E-18 144.6 13.5 115 534-655 51-175 (191)
39 cd06438 EpsO_like EpsO protein 99.4 1.1E-12 2.5E-17 134.2 11.7 102 548-655 61-167 (183)
40 cd04184 GT2_RfbC_Mx_like Myxoc 99.4 1E-11 2.2E-16 127.4 16.2 122 366-611 1-123 (202)
41 cd04195 GT2_AmsE_like GT2_AmsE 99.3 5.8E-11 1.3E-15 122.0 16.6 64 535-612 57-121 (201)
42 PF13506 Glyco_transf_21: Glyc 99.2 6.7E-11 1.4E-15 122.9 9.8 154 548-834 15-175 (175)
43 cd06433 GT_2_WfgS_like WfgS an 99.2 4.8E-10 1E-14 113.4 15.5 54 550-612 62-116 (202)
44 cd02510 pp-GalNAc-T pp-GalNAc- 99.1 2.4E-09 5.2E-14 118.6 17.0 109 370-595 2-110 (299)
45 cd04196 GT_2_like_d Subfamily 99.1 1.7E-09 3.6E-14 111.5 14.6 64 535-612 56-120 (214)
46 PF14570 zf-RING_4: RING/Ubox 99.1 7E-11 1.5E-15 97.9 2.9 48 39-89 1-48 (48)
47 cd02522 GT_2_like_a GT_2_like_ 99.1 4.3E-09 9.4E-14 109.5 16.6 42 550-596 59-100 (221)
48 cd06420 GT2_Chondriotin_Pol_N 99.0 5.2E-09 1.1E-13 105.7 16.1 42 549-596 65-106 (182)
49 cd04186 GT_2_like_c Subfamily 99.0 6.2E-09 1.3E-13 102.3 15.1 51 549-608 60-111 (166)
50 PF03142 Chitin_synth_2: Chiti 99.0 5.4E-08 1.2E-12 116.2 25.1 53 786-840 324-378 (527)
51 PLN02726 dolichyl-phosphate be 99.0 2E-08 4.2E-13 108.0 17.7 60 535-608 70-129 (243)
52 cd06423 CESA_like CESA_like is 99.0 9.5E-09 2.1E-13 99.8 13.8 62 535-610 55-117 (180)
53 cd02526 GT2_RfbF_like RfbF is 98.9 1.2E-08 2.6E-13 107.5 15.0 65 535-611 49-117 (237)
54 cd06913 beta3GnTL1_like Beta 1 98.9 2.2E-08 4.7E-13 105.3 15.8 55 535-595 57-111 (219)
55 cd04185 GT_2_like_b Subfamily 98.9 3.2E-08 6.9E-13 102.2 14.9 65 535-611 53-117 (202)
56 PF00535 Glycos_transf_2: Glyc 98.9 3.1E-09 6.8E-14 103.4 6.9 110 534-655 54-165 (169)
57 cd06442 DPM1_like DPM1_like re 98.9 5.5E-08 1.2E-12 101.5 16.2 60 535-608 55-114 (224)
58 cd04188 DPG_synthase DPG_synth 98.6 4.4E-07 9.6E-12 94.9 14.0 51 550-609 69-119 (211)
59 PRK10073 putative glycosyl tra 98.6 6.1E-07 1.3E-11 102.0 15.7 110 364-596 4-113 (328)
60 cd04179 DPM_DPG-synthase_like 98.6 4.8E-07 1E-11 91.5 11.7 65 535-613 56-120 (185)
61 PRK10018 putative glycosyl tra 98.5 2.7E-06 5.9E-11 94.9 17.5 52 534-595 61-112 (279)
62 TIGR01556 rhamnosyltran L-rham 98.5 2.9E-06 6.3E-11 93.1 16.4 68 534-611 46-113 (281)
63 PRK10063 putative glycosyl tra 98.3 8.6E-06 1.9E-10 89.1 15.5 46 366-415 1-47 (248)
64 cd00761 Glyco_tranf_GTA_type G 98.3 9E-06 2E-10 77.1 13.6 52 548-608 62-114 (156)
65 cd04187 DPM1_like_bac Bacteria 98.3 4.6E-06 1E-10 84.9 11.8 105 534-656 56-160 (181)
66 KOG2571 Chitin synthase/hyalur 98.2 2.2E-05 4.9E-10 97.6 17.3 50 786-837 549-598 (862)
67 PF10111 Glyco_tranf_2_2: Glyc 98.2 3.2E-05 6.9E-10 86.0 16.4 63 549-617 74-136 (281)
68 PTZ00260 dolichyl-phosphate be 98.1 6.3E-05 1.4E-09 86.0 16.6 41 550-595 149-189 (333)
69 PRK13915 putative glucosyl-3-p 98.0 2.9E-05 6.2E-10 87.9 11.4 51 549-607 101-152 (306)
70 COG1216 Predicted glycosyltran 98.0 0.00017 3.6E-09 81.0 17.5 68 534-613 57-126 (305)
71 PRK10714 undecaprenyl phosphat 97.3 0.0015 3.3E-08 74.5 11.6 41 549-594 76-116 (325)
72 KOG2547 Ceramide glucosyltrans 97.2 0.0058 1.3E-07 70.2 13.9 159 548-834 155-314 (431)
73 cd02511 Beta4Glucosyltransfera 96.9 0.0071 1.5E-07 64.9 11.1 42 550-596 58-99 (229)
74 COG5175 MOT2 Transcriptional r 96.8 0.00055 1.2E-08 76.7 2.2 48 38-88 16-63 (480)
75 COG0463 WcaA Glycosyltransfera 96.8 0.0098 2.1E-07 57.2 10.4 45 365-415 2-46 (291)
76 PF14446 Prok-RING_1: Prokaryo 95.8 0.0051 1.1E-07 52.9 2.0 46 36-89 5-52 (54)
77 TIGR00570 cdk7 CDK-activating 95.6 0.013 2.8E-07 66.4 4.6 58 35-94 2-59 (309)
78 PF02364 Glucan_synthase: 1,3- 94.6 0.26 5.6E-06 62.4 12.3 73 786-864 409-482 (817)
79 cd02514 GT13_GLCNAC-TI GT13_GL 94.5 0.44 9.5E-06 55.3 13.2 41 369-413 3-43 (334)
80 PF05290 Baculo_IE-1: Baculovi 89.1 0.26 5.6E-06 49.8 2.3 52 37-92 81-135 (140)
81 cd00162 RING RING-finger (Real 88.8 0.4 8.8E-06 37.4 2.9 44 38-87 1-44 (45)
82 KOG2978 Dolichol-phosphate man 87.3 3.1 6.8E-05 44.8 9.1 53 534-596 64-116 (238)
83 smart00504 Ubox Modified RING 80.1 1.8 3.9E-05 37.2 3.2 44 38-89 3-46 (63)
84 PHA02862 5L protein; Provision 74.6 1.9 4.1E-05 44.3 2.0 50 36-91 2-55 (156)
85 KOG2977 Glycosyltransferase [G 74.3 17 0.00036 41.7 9.3 50 367-417 68-120 (323)
86 PHA02929 N1R/p28-like protein; 74.3 3.6 7.7E-05 45.8 4.2 55 34-89 172-227 (238)
87 PRK14559 putative protein seri 73.9 1.4 3E-05 55.4 1.0 24 66-90 30-53 (645)
88 KOG0823 Predicted E3 ubiquitin 72.4 3.1 6.7E-05 45.8 3.1 46 36-89 47-95 (230)
89 PF13639 zf-RING_2: Ring finge 71.5 2.5 5.4E-05 34.3 1.7 43 38-85 2-44 (44)
90 PLN03208 E3 ubiquitin-protein 71.3 3.7 7.9E-05 44.3 3.3 53 31-90 13-80 (193)
91 PF14447 Prok-RING_4: Prokaryo 70.8 1.8 3.8E-05 37.8 0.7 46 36-91 7-52 (55)
92 smart00659 RPOLCX RNA polymera 70.2 2.6 5.5E-05 35.2 1.5 27 37-65 3-29 (44)
93 PHA02825 LAP/PHD finger-like p 70.0 3.7 8.1E-05 42.9 2.9 51 35-91 7-61 (162)
94 PF03604 DNA_RNApol_7kD: DNA d 69.5 3.3 7.2E-05 32.3 1.9 26 38-65 2-27 (32)
95 KOG0916 1,3-beta-glucan syntha 68.9 40 0.00086 45.6 12.1 83 786-874 1173-1257(1679)
96 KOG2932 E3 ubiquitin ligase in 66.2 3.4 7.4E-05 47.0 1.9 45 49-93 84-138 (389)
97 smart00184 RING Ring finger. E 64.9 5.9 0.00013 29.6 2.5 39 39-84 1-39 (39)
98 KOG2068 MOT2 transcription fac 64.9 4.8 0.0001 46.5 2.8 52 36-91 249-300 (327)
99 PF13712 Glyco_tranf_2_5: Glyc 61.8 26 0.00056 38.2 7.6 49 549-605 40-89 (217)
100 KOG3800 Predicted E3 ubiquitin 61.6 5.7 0.00012 45.1 2.6 53 37-91 1-53 (300)
101 PF03966 Trm112p: Trm112p-like 61.3 1.3 2.7E-05 39.8 -2.1 26 67-92 42-67 (68)
102 KOG0006 E3 ubiquitin-protein l 60.6 6.6 0.00014 44.9 2.8 63 31-94 310-413 (446)
103 PRK00420 hypothetical protein; 57.8 4.1 8.8E-05 40.5 0.6 29 56-90 24-52 (112)
104 PF00097 zf-C3HC4: Zinc finger 55.6 8.1 0.00018 30.6 1.9 40 39-84 1-41 (41)
105 PF14471 DUF4428: Domain of un 54.0 7 0.00015 33.6 1.3 28 38-71 1-28 (51)
106 PRK15103 paraquat-inducible me 53.6 10 0.00022 45.6 3.0 31 53-92 219-249 (419)
107 PF13923 zf-C3HC4_2: Zinc fing 53.1 10 0.00022 30.1 2.1 39 39-84 1-39 (39)
108 PF02318 FYVE_2: FYVE-type zin 52.9 1.5 3.2E-05 43.5 -3.5 47 35-84 53-100 (118)
109 PF13920 zf-C3HC4_3: Zinc fing 52.6 10 0.00022 31.7 2.0 45 38-90 4-49 (50)
110 COG5114 Histone acetyltransfer 52.0 4.6 0.0001 46.1 -0.1 36 38-77 7-43 (432)
111 PRK12495 hypothetical protein; 51.0 8.3 0.00018 42.3 1.6 30 54-90 41-70 (226)
112 KOG3737 Predicted polypeptide 49.8 52 0.0011 39.2 7.7 47 361-410 150-196 (603)
113 PHA02926 zinc finger-like prot 49.5 19 0.00041 39.8 4.0 62 33-94 167-235 (242)
114 PRK04023 DNA polymerase II lar 48.1 12 0.00026 48.8 2.6 45 34-89 624-674 (1121)
115 TIGR00155 pqiA_fam integral me 47.9 11 0.00024 45.0 2.2 30 54-91 214-243 (403)
116 smart00291 ZnF_ZZ Zinc-binding 47.6 12 0.00026 30.8 1.7 37 36-77 4-41 (44)
117 PF07851 TMPIT: TMPIT-like pro 47.0 3.4E+02 0.0075 32.0 13.8 18 921-938 173-190 (330)
118 smart00249 PHD PHD zinc finger 47.0 8.2 0.00018 30.5 0.6 31 38-72 1-31 (47)
119 PF11077 DUF2616: Protein of u 45.6 7.2 0.00016 41.5 0.1 35 39-78 55-104 (173)
120 KOG1941 Acetylcholine receptor 45.6 9.2 0.0002 44.9 1.0 69 35-106 364-438 (518)
121 PRK00398 rpoP DNA-directed RNA 45.4 13 0.00027 30.9 1.5 27 38-65 5-31 (46)
122 PRK12380 hydrogenase nickel in 44.6 6.5 0.00014 38.9 -0.4 27 55-88 70-96 (113)
123 KOG0457 Histone acetyltransfer 44.1 9.6 0.00021 45.4 0.9 58 36-100 14-74 (438)
124 COG4858 Uncharacterized membra 41.9 1.3E+02 0.0027 32.9 8.4 61 991-1051 99-162 (226)
125 PRK07220 DNA topoisomerase I; 40.6 12 0.00025 48.2 0.9 48 37-86 590-643 (740)
126 PF07282 OrfB_Zn_ribbon: Putat 40.3 18 0.00038 32.2 1.7 33 35-68 27-59 (69)
127 PRK00564 hypA hydrogenase nick 40.0 9.3 0.0002 38.0 -0.1 29 56-91 72-101 (117)
128 PF03884 DUF329: Domain of unk 39.5 18 0.00038 32.0 1.5 33 75-107 15-53 (57)
129 KOG2068 MOT2 transcription fac 39.0 12 0.00025 43.5 0.5 31 62-92 1-33 (327)
130 KOG3736 Polypeptide N-acetylga 39.0 36 0.00077 42.6 4.6 49 362-413 138-186 (578)
131 TIGR00599 rad18 DNA repair pro 38.9 24 0.00052 42.2 3.1 52 30-89 19-71 (397)
132 COG0551 TopA Zn-finger domain 38.9 17 0.00036 37.0 1.5 49 34-86 15-68 (140)
133 cd02249 ZZ Zinc finger, ZZ typ 38.4 21 0.00047 29.6 1.8 30 38-72 2-32 (46)
134 cd02335 ZZ_ADA2 Zinc finger, Z 38.4 22 0.00048 30.0 1.9 30 38-71 2-32 (49)
135 PF01155 HypA: Hydrogenase exp 37.8 4.2 9.2E-05 40.1 -2.8 13 79-91 87-99 (113)
136 COG4739 Uncharacterized protei 37.7 19 0.00041 37.4 1.7 45 45-89 77-121 (182)
137 COG1996 RPC10 DNA-directed RNA 37.4 16 0.00035 31.4 0.9 29 36-65 6-34 (49)
138 COG2191 Formylmethanofuran deh 35.8 20 0.00042 39.1 1.5 26 36-71 172-201 (206)
139 PF11238 DUF3039: Protein of u 35.7 12 0.00026 33.1 -0.1 12 79-90 45-56 (58)
140 TIGR02443 conserved hypothetic 35.6 20 0.00043 31.9 1.3 31 34-64 7-40 (59)
141 PF06906 DUF1272: Protein of u 35.5 33 0.00072 30.3 2.5 47 38-90 7-53 (57)
142 PRK03681 hypA hydrogenase nick 35.4 12 0.00025 37.2 -0.2 29 56-91 71-100 (114)
143 COG0068 HypF Hydrogenase matur 35.2 30 0.00065 43.9 3.1 59 34-92 99-189 (750)
144 COG4393 Predicted membrane pro 34.9 8.5E+02 0.018 29.0 15.6 23 1046-1068 196-218 (405)
145 cd00350 rubredoxin_like Rubred 34.8 10 0.00022 29.5 -0.5 14 76-89 15-28 (33)
146 PF07649 C1_3: C1-like domain; 34.7 19 0.00041 27.2 0.9 28 38-69 2-29 (30)
147 TIGR00100 hypA hydrogenase nic 34.7 13 0.00029 36.8 0.1 29 56-91 71-99 (115)
148 PF09484 Cas_TM1802: CRISPR-as 34.3 21 0.00045 44.6 1.7 44 33-77 195-254 (593)
149 COG4818 Predicted membrane pro 33.7 3.9E+02 0.0084 26.3 9.5 26 939-964 5-30 (105)
150 PF14634 zf-RING_5: zinc-RING 33.2 37 0.00079 27.8 2.4 43 39-86 2-44 (44)
151 PRK11827 hypothetical protein; 32.4 27 0.00058 31.2 1.6 32 64-95 12-43 (60)
152 PF00265 TK: Thymidine kinase; 32.2 17 0.00037 38.5 0.4 34 37-70 138-176 (176)
153 cd00730 rubredoxin Rubredoxin; 32.0 11 0.00024 32.3 -0.8 7 80-86 36-42 (50)
154 KOG2792 Putative cytochrome C 31.9 35 0.00076 38.6 2.7 41 348-389 158-198 (280)
155 PRK14973 DNA topoisomerase I; 31.6 26 0.00055 46.3 1.9 47 37-86 589-643 (936)
156 PRK07219 DNA topoisomerase I; 31.3 23 0.0005 46.1 1.4 53 36-91 688-746 (822)
157 KOG0311 Predicted E3 ubiquitin 31.1 13 0.00029 43.3 -0.6 45 38-88 45-89 (381)
158 TIGR02460 osmo_MPGsynth mannos 30.6 1.2E+02 0.0026 35.9 6.7 41 547-590 140-180 (381)
159 KOG3005 GIY-YIG type nuclease 30.2 37 0.0008 38.5 2.6 61 25-90 171-244 (276)
160 TIGR01562 FdhE formate dehydro 30.1 35 0.00076 39.5 2.4 44 35-87 183-233 (305)
161 PRK14873 primosome assembly pr 29.4 34 0.00073 43.6 2.3 10 78-87 422-431 (665)
162 PRK04296 thymidine kinase; Pro 29.2 25 0.00053 37.4 1.0 35 37-71 141-186 (190)
163 PF00628 PHD: PHD-finger; Int 29.2 34 0.00075 28.3 1.7 45 38-86 1-50 (51)
164 PRK11595 DNA utilization prote 29.0 32 0.00069 37.7 1.8 39 36-87 5-43 (227)
165 PF14446 Prok-RING_1: Prokaryo 28.9 21 0.00045 31.3 0.3 16 75-90 18-33 (54)
166 COG4391 Uncharacterized protei 28.8 21 0.00045 32.0 0.3 17 74-90 44-60 (62)
167 PRK14890 putative Zn-ribbon RN 28.8 58 0.0013 29.1 3.0 49 36-86 7-56 (59)
168 TIGR02921 PEP_integral PEP-CTE 28.5 1.2E+03 0.025 30.0 14.5 25 870-894 47-71 (952)
169 KOG2857 Predicted MYND Zn-fing 28.5 29 0.00063 35.8 1.3 45 36-92 5-50 (157)
170 TIGR00155 pqiA_fam integral me 28.4 33 0.00071 41.1 1.9 35 54-92 12-47 (403)
171 PF13240 zinc_ribbon_2: zinc-r 27.5 14 0.0003 26.8 -0.9 13 75-87 10-22 (23)
172 KOG2442 Uncharacterized conser 27.4 4.1E+02 0.009 32.9 10.5 79 990-1079 311-391 (541)
173 PF03452 Anp1: Anp1; InterPro 27.1 5.8E+02 0.013 29.4 11.2 43 552-595 128-170 (269)
174 TIGR01206 lysW lysine biosynth 26.5 39 0.00085 29.6 1.5 13 38-50 4-16 (54)
175 COG2888 Predicted Zn-ribbon RN 26.4 54 0.0012 29.4 2.4 48 36-85 9-57 (61)
176 PRK14503 mannosyl-3-phosphogly 26.4 1.3E+02 0.0028 35.9 6.0 41 547-590 141-181 (393)
177 PF13248 zf-ribbon_3: zinc-rib 26.4 16 0.00034 27.0 -0.7 14 74-87 12-25 (26)
178 PRK03824 hypA hydrogenase nick 25.9 18 0.00039 36.9 -0.7 11 77-87 106-116 (135)
179 PRK06319 DNA topoisomerase I/S 25.9 34 0.00074 44.9 1.6 56 35-93 591-660 (860)
180 KOG3507 DNA-directed RNA polym 25.0 28 0.0006 31.0 0.4 28 36-65 20-47 (62)
181 PF13896 Glyco_transf_49: Glyc 25.0 82 0.0018 36.5 4.3 39 566-605 126-164 (317)
182 PF13719 zinc_ribbon_5: zinc-r 24.9 30 0.00066 27.6 0.5 11 80-90 4-14 (37)
183 KOG2824 Glutaredoxin-related p 24.8 37 0.00081 38.6 1.4 22 33-62 226-247 (281)
184 TIGR00595 priA primosomal prot 24.6 32 0.00069 42.3 0.9 44 38-93 215-268 (505)
185 PTZ00293 thymidine kinase; Pro 24.1 33 0.00072 37.7 0.8 35 37-71 138-177 (211)
186 cd02336 ZZ_RSC8 Zinc finger, Z 24.1 41 0.00088 28.3 1.2 34 38-76 2-36 (45)
187 smart00744 RINGv The RING-vari 23.9 89 0.0019 26.5 3.2 45 38-85 1-49 (49)
188 PF13717 zinc_ribbon_4: zinc-r 23.9 33 0.00071 27.4 0.5 11 80-90 4-14 (36)
189 TIGR02556 cas_TM1802 CRISPR-as 23.3 49 0.0011 41.3 2.2 41 36-77 170-222 (555)
190 KOG1609 Protein involved in mR 23.1 48 0.001 37.4 1.9 58 36-94 78-139 (323)
191 PRK08359 transcription factor; 23.0 26 0.00055 37.6 -0.3 30 37-74 7-42 (176)
192 PF09526 DUF2387: Probable met 22.9 45 0.00097 30.7 1.3 31 34-64 6-39 (71)
193 COG1499 NMD3 NMD protein affec 22.9 44 0.00096 39.5 1.6 49 34-98 4-60 (355)
194 KOG2177 Predicted E3 ubiquitin 22.9 43 0.00093 35.9 1.4 42 36-85 13-54 (386)
195 COG4707 Uncharacterized protei 22.8 37 0.00079 33.0 0.7 43 470-523 20-69 (107)
196 PRK14714 DNA polymerase II lar 22.8 38 0.00082 45.6 1.1 48 37-91 668-722 (1337)
197 cd00899 b4GalT Beta-4-Galactos 22.7 99 0.0022 34.3 4.1 79 732-840 112-200 (219)
198 PF04641 Rtf2: Rtf2 RING-finge 22.4 59 0.0013 36.6 2.4 51 34-90 111-162 (260)
199 PRK15103 paraquat-inducible me 22.3 38 0.00083 40.8 1.0 33 56-92 11-44 (419)
200 PF03107 C1_2: C1 domain; Int 22.1 48 0.001 25.3 1.1 28 38-69 2-29 (30)
201 TIGR03830 CxxCG_CxxCG_HTH puta 21.4 31 0.00068 33.7 0.0 40 39-88 1-41 (127)
202 PF02709 Glyco_transf_7C: N-te 21.1 57 0.0012 30.2 1.7 48 731-808 19-66 (78)
203 cd03031 GRX_GRX_like Glutaredo 21.1 33 0.00072 35.6 0.1 43 35-86 98-141 (147)
204 KOG3533 Inositol 1,4,5-trispho 21.1 2.4E+03 0.053 30.1 15.9 16 402-417 1779-1794(2706)
205 TIGR00143 hypF [NiFe] hydrogen 21.1 48 0.001 42.6 1.5 58 34-91 66-153 (711)
206 COG4416 Com Mu-like prophage p 20.8 60 0.0013 28.5 1.5 22 66-87 7-33 (60)
207 KOG0320 Predicted E3 ubiquitin 20.7 65 0.0014 34.7 2.1 45 37-87 132-176 (187)
208 PRK14502 bifunctional mannosyl 20.4 2.2E+02 0.0048 36.7 7.0 41 547-590 145-185 (694)
209 PF00643 zf-B_box: B-box zinc 20.2 52 0.0011 26.3 1.0 30 36-72 3-32 (42)
210 PF12773 DZR: Double zinc ribb 20.0 64 0.0014 26.8 1.6 12 36-47 12-23 (50)
No 1
>PLN02436 cellulose synthase A
Probab=100.00 E-value=0 Score=2893.25 Aligned_cols=1085 Identities=86% Similarity=1.447 Sum_probs=1013.1
Q ss_pred CCCCCcccccccCCceEEEeecccccccccccccCCccccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCC
Q 001382 1 MATNGRLVAGSHNRNEFVLINADEVARVTSVKELSGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQA 80 (1089)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~ 80 (1089)
||+++|||||||||||||+++.|++.++||++++++|+||||||+||+|+|||+|||||||+|||||||||||||||||+
T Consensus 1 m~~~~~~~~gs~~r~e~~~~~~d~~~~~k~~~~~~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~ 80 (1094)
T PLN02436 1 MNTGGRLIAGSHNRNEFVLINADEIARIRSVQELSGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQA 80 (1094)
T ss_pred CCcccccccccccccceeEeccccccCCCCccccCCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCcc
Confidence 99999999999999999999999777779999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccccccCCCCCCCCCCCCCcccccccccCC-CCCCchhhHHHhhhhccccCCCCCcccccccCCCccccccccC
Q 001382 81 CPQCKTRYKRIKGSPRVDGDEEEDDTDDLENEFDIN-DRKDPHHIAEAMLSSRLNIGRGSQAYVSGITTPSEVDSVSVAQ 159 (1089)
Q Consensus 81 CpqCkt~Ykr~kgsprv~gd~ee~~~dd~~~ef~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (1089)
|||||||||||||||||+|||||||+||+||||+|. ++++.++++|+|++|+|++|++.+.....+..+.+.. +..+
T Consensus 81 Cpqckt~Y~r~kgs~~~~~d~ee~~~dd~e~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 158 (1094)
T PLN02436 81 CPQCKTRYKRIKGSPRVEGDEEEDDIDDLENEFDYGNNGLDPEQVAEAMLSSRLNTGRHSNVSGIATPSELDSA--PPGS 158 (1094)
T ss_pred CcccCCchhhccCCCCcCCccccccchhhhhhhcCcccccchHHHHHHHhhhhcccCccccccccccccccccC--CCcC
Confidence 999999999999999999999999999999999986 3333477899999999999998762211111112221 0025
Q ss_pred CCcccccCC--CCCCCCCcCcccccCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCccccCcCccccchhhHHHHHhhh
Q 001382 160 EIPLLTYGN--EDVGISSDKHALIIPPFMGRGKRIHPMSFPDGFMTLPPRPMDPKKDLAVYGYGTVAWKERMEEWKKKQN 237 (1089)
Q Consensus 160 ~~~~l~~~~--~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 237 (1089)
++|+|++++ +|++ +++|++++|+.+|.||||||+||+|++.++++|.+||+||+++||||||+||||||+||+||+
T Consensus 159 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~wkerv~~wk~kq~ 236 (1094)
T PLN02436 159 QIPLLTYGEEDVEIS--SDRHALIVPPSTGHGNRVHPMPFPDSSASLQPRPMVPQKDLAVYGYGSVAWKDRMEEWKKKQN 236 (1094)
T ss_pred CCcccccCcccCccC--CcccccccCCcccccccccccccccccccCCCccCCccccccccccCcHHHHHHHHHHHhhhh
Confidence 789999876 5555 567777788888889999999999999999999999999999999999999999999999998
Q ss_pred hhhhhcccCCCCCCCCCCCCCCCCCCCcCccCCCCCceeeeecCCCCcchhHHHHHHHHHHHHHhhhhhccccccchhhH
Q 001382 238 EKLQVVKHQGGNGGGNNDGDGVDDPDLPMMDEGRQPLSRKLPISSSKISPYRLIILLRLVILGLFFHYRILHPVNDAYGL 317 (1089)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~yR~~~~~~l~~l~~yl~wRi~~~~~~a~~l 317 (1089)
+|++++.+..+..+|+.++.+.+++|++++|++++||+||+++++++++|||++++++|+++++||+||++|++.+++|+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pL~~~~~i~~~~~~pyR~~~~~rlv~l~~fl~yRi~~~~~~a~~~ 316 (1094)
T PLN02436 237 EKLQVVKHEGGNDGGNNDGDELDDPDLPMMDEGRQPLSRKLPIPSSKINPYRMIIILRLVILGLFFHYRILHPVNDAYGL 316 (1094)
T ss_pred hcccccccccccccCCCCCCCCCCcccccccccCCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHhhccCcccHHH
Confidence 55555554322223344432334678899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCcccccccchhhhHhhhhhccCCCCCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCC
Q 001382 318 WLTSVICEIWFAVSWILDQFPKWDPIVRETYLDRLSLRYEKEGKPSDLADIDIFVSTVDPMKEPPLITANTVLSILAVDY 397 (1089)
Q Consensus 318 wl~~~~~Ei~f~~~wiL~q~~kw~Pi~R~~~~drL~~r~~~~~~~~~lP~VDvfV~T~dP~kEPp~v~~nTvls~la~DY 397 (1089)
|+++++||+||+|+|+|+|++||+||+|+||+|||++||++++++++||+|||||||+||.||||++|+||||||||+||
T Consensus 317 Wl~s~~cE~WFaf~Wll~Q~~Kw~Pv~R~t~~drL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DY 396 (1094)
T PLN02436 317 WLTSVICEIWFAVSWILDQFPKWYPIERETYLDRLSLRYEKEGKPSELASVDVFVSTVDPMKEPPLITANTVLSILAVDY 396 (1094)
T ss_pred HHHHHHHHHHHHHHHHHccCcccccccceeCHHHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred CCCCcEEEEcCCCchhhhHHHHhhhHHHhhhhhhhhhhcCCCCCCchhhhhhccccccCCCCchhHHHHHHHHHHHHHHH
Q 001382 398 PVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRAPEWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFK 477 (1089)
Q Consensus 398 P~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFCkk~~Iepr~Pe~YFs~~~d~~~~~~~~~f~~err~~kreYee~k 477 (1089)
|+|||+|||||||+|+||||||.|||+|||+||||||||+|||||||+||++|.|+++++.+|+|++|||+|||||||||
T Consensus 397 P~eKlscYvSDDGgS~LTf~AL~EAa~FAk~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mKreYEe~K 476 (1094)
T PLN02436 397 PVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFSIEPRAPEWYFSQKMDYLKNKVHPAFVRERRAMKREYEEFK 476 (1094)
T ss_pred cccceEEEEecCCchHHHHHHHHHHHHHHHhhcccccccCCCcCCHHHHhhccCCcccccCChhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccCCcCccccCCCCCCCCCCCCCCcchhhhhccCCCCccccCCccCcEEEEeccCCCCCCCCCchhhhHH
Q 001382 478 VRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVRDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNA 557 (1089)
Q Consensus 478 ~rI~~l~~~~~~~p~~~w~m~dg~~w~~~~~rdHp~iiqv~l~~~g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNa 557 (1089)
+|||+|+++++++|+++|.|+||++|||++++|||+|||||++++|+.|.+|++||+|||||||||||++||+||||||+
T Consensus 477 ~RIe~l~~~~~~vp~~~~~m~dgt~W~g~~~~dHp~IIqVll~~~~~~d~~g~~LP~LVYVSREKRPg~~Hh~KAGAMNa 556 (1094)
T PLN02436 477 VKINALVATAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGHSGVRDVEGNELPRLVYVSREKRPGFDHHKKAGAMNS 556 (1094)
T ss_pred HHHHHHHhhcccCchhhhhhccCccCCCCCCCCCccceEEEecCCCCcccccccCceEEEEecccCCCCCcchhhhhhhh
Confidence 99999999889999999999999999999999999999999999998999999999999999999999999999999999
Q ss_pred HHHhhccccCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCceEEEEecCccccCCCccccccchhhhhhhhhcccccc
Q 001382 558 LIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDG 637 (1089)
Q Consensus 558 llrvSa~~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~v~~VQ~PQ~F~nid~~D~y~n~~~vFfdi~~~glDg 637 (1089)
|+||||+|||||||||||||||+|||+++|+||||||||+.|+++|||||||+|+|+|++|||+|+++||||++|+|+||
T Consensus 557 LlRVSavmTNaP~ILNLDCDmYiNns~a~r~AMCfllD~~~g~~~afVQFPQrF~gi~k~D~Y~n~~~vffdi~~~GlDG 636 (1094)
T PLN02436 557 LIRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDG 636 (1094)
T ss_pred hhhhheeecCCceEEecccccccCchHHHHHhhhhhcCCccCCeeEEEcCCcccCCCCCCCcccccceEeeecccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccccccchhhhhhcCCCCCCCCCCCCCcCCCCCCcccccccccccccccCC----CccCCcchhhhhhhhhhhhh
Q 001382 638 IQGPIYVGTGCVFRRQALYGYDAPVKKKPPRKTCNCLPKWCCCCCRSRKKSKKGKS----NKKNKDTSKQIYALENIEEG 713 (1089)
Q Consensus 638 ~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 713 (1089)
+|||+|+||||+|||+||||++||...+.+...++||+.|||+||+.|++++++++ +.++.+...+++++++++++
T Consensus 637 lqGP~YvGTGC~frR~aLYG~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 716 (1094)
T PLN02436 637 IQGPIYVGTGCVFRRQALYGYDAPKKKKPPGKTCNCWPKWCCLCCGSRKKKKKKKSKEKKKKKNREASKQIHALENIEEG 716 (1094)
T ss_pred CCCccccccCceeeeeeeeccCCccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999887666666788999999999998876543322 11233455678888998887
Q ss_pred cc--ccccccCchhHHHhhhcCCchHHHHHHhHhhCCCCCCCChhhHHHHhHHhhcccccccCccccccCcccccccchH
Q 001382 714 IE--DNEKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGASTASLLNEAIHVISCGYEDKTDWGKEIGWIYGSVTEDI 791 (1089)
Q Consensus 714 ~~--~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~~~ea~~v~sc~YE~~T~WG~evGW~ygSvTEDi 791 (1089)
++ +++++..++++.++++||+|++|++|++++.||.+...+++++++||++||||+||++|+||+||||+|||+|||+
T Consensus 717 ~~~~~~~~~~~~~~~~l~~~FG~S~~fi~S~~~~~~~~~~~~~~~s~l~eA~~V~sC~YE~~T~WG~evGwiYGSvTEDv 796 (1094)
T PLN02436 717 IEGSNNEKSSETPQLKLEKKFGQSPVFVASTLLENGGVPRNASPASLLREAIQVISCGYEDKTEWGKEIGWIYGSVTEDI 796 (1094)
T ss_pred cccccchhhhhhhhhhHHhhhcccHHHHHHHHHhhcCCCCCCCcHHHHHHHHHhhcCCCcccChhhHhhCeeccceecHH
Confidence 76 4577778999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCcEEEEecCCCCcccccCCCCHHHHHHhhheecchhhHHHHhhccccccccCCCCCcccchhhhhhhhhHh
Q 001382 792 LTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEILLSRHCPIWYGYGCGLKPLERFSYINSVVYPI 871 (1089)
Q Consensus 792 ~Tg~rLh~rGWrsvY~~p~~~Af~G~aP~tl~~~l~QR~RWA~G~lQIl~sk~~Pl~~g~~k~L~~~QRL~Yl~~~ly~l 871 (1089)
.||++||++||||+|++|+++||.|+||+|+.+++.||+|||+|++||+++|++|+|+|+.++|+++|||+|+++++||+
T Consensus 797 ~TG~rLH~rGWrSvY~~P~r~AF~GlAP~~L~d~L~Qr~RWA~G~lQIffsr~nPl~~g~~~~L~l~QRL~Yl~~~ly~l 876 (1094)
T PLN02436 797 LTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYGGGLKWLERFSYINSVVYPW 876 (1094)
T ss_pred HHHHHHHcCCCceEeCCCCchhhcCcCCCCHHHHHHHHHHHhhcceeeeeccCCcchhcccccCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988778999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCcccccchhHHHHHHHHHHHHHHHHHHHHhhccCCcccccccchhhhhhhhhHHHHHHHHH
Q 001382 872 TSIPLIAYCTLPAICLLTGKFIVPEISNYASILFMALFISIAATGILEMQWGGVGIHDWWRNEQFWVIGGASSHLFALIQ 951 (1089)
Q Consensus 872 ~sl~~liylllP~l~Ll~G~~ivp~~s~~~~i~fi~lfls~~~~~lLe~~wsG~s~~~wWrne~~W~I~~~sa~l~Av~~ 951 (1089)
+++++++|+++|++||++|++++|.++.+++++|+++|++++++++||++|+|+++++||||||||+|.++|+|+||+++
T Consensus 877 ~Slp~liY~~lP~l~LL~G~~i~P~vs~~~~~~fi~lfls~~~~~lLE~~wsG~si~~WWrnQq~w~I~~tSa~Lfavl~ 956 (1094)
T PLN02436 877 TSIPLIVYCTLPAICLLTGKFIVPEISNYASILFMALFISIAATGILEMQWGGVGIDDWWRNEQFWVIGGVSSHLFALFQ 956 (1094)
T ss_pred HHHHHHHHHHHHHHHHHcCCeecCccchHHHHHHHHHHHHHHHHHHHHHHhccccHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCccceeeCCCCCCCCCcccceeeccccchHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHH
Q 001382 952 GLLKVVGGVNTNFTVTSKAADDGEFSDLYLFKWTSLLIPPLTLLVFNLIGVIIGVADAISNGYETWGPLFGKLFFSLWVI 1031 (1089)
Q Consensus 952 aLlk~L~g~~~~F~VTpKg~~~~~~~~ly~f~ws~L~iP~~~Llilnliaiv~Gi~r~i~~~~~~wg~l~g~l~~~~Wvl 1031 (1089)
+++|+|++++++|.||+|..+++.++++|+|+|++|++|+++++++|++|+++|++++++++++.|+++++++|+++|++
T Consensus 957 ~iLKvLggs~~~F~VTsK~~d~~~~a~ly~f~~S~L~iP~tti~ilNlvaiv~Gi~~~i~~g~~~~g~l~~~l~~~~wvv 1036 (1094)
T PLN02436 957 GLLKVLAGVNTNFTVTSKAADDGEFSELYLFKWTSLLIPPTTLLIINIIGVIVGVSDAINNGYDSWGPLFGRLFFALWVI 1036 (1094)
T ss_pred HHHHHhccCcccceecccccccccccceeeecceeHhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHH
Confidence 99999999999999999988776778999999999999999999999999999999999988889999999999999999
Q ss_pred HHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHhheeEecCCCCCCCccccccCCCCC
Q 001382 1032 LHLYPFLKGFLGKQDRLPTILLVWAILLASIFSLLWARVNPFVSKGDIVLEVCGLDCN 1089 (1089)
Q Consensus 1032 ~~l~Pfl~gL~gR~~~~P~~v~~~s~~la~~f~~l~v~~~~~~~~~~~~~~~~~~~~~ 1089 (1089)
+|+|||++|||||++|+||||++||++||++||||||+||||++++||++++|||||+
T Consensus 1037 v~lyPf~kgL~gr~~r~P~~v~v~s~lla~~~~l~~v~~~~~~~~~~~~~~~~~~~~~ 1094 (1094)
T PLN02436 1037 VHLYPFLKGLLGKQDRMPTIILVWSILLASILTLLWVRVNPFVSKGGPVLEICGLDCD 1094 (1094)
T ss_pred HHHHHHHHHHhccCCCCCeeehHHHHHHHHHHHHHHeeeccccCCCCccccccCccCC
Confidence 9999999999999999999999999999999999999999999999999999999996
No 2
>PLN02400 cellulose synthase
Probab=100.00 E-value=0 Score=2877.20 Aligned_cols=1066 Identities=67% Similarity=1.214 Sum_probs=984.0
Q ss_pred CCCCCcccccccCCceEEEeecccccccccccccCCccccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCC
Q 001382 1 MATNGRLVAGSHNRNEFVLINADEVARVTSVKELSGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQA 80 (1089)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~ 80 (1089)
||+++|||||||||||||+|+.|++.++||++++++|+||||||+||+|+|||+|||||||+|||||||||||||||||+
T Consensus 1 ~~~~~glvaGSh~Rnelv~i~~d~~~g~kp~~~~~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~ 80 (1085)
T PLN02400 1 MEANAGMVAGSYRRNELVRIRHDSDSGPKPLKNLNGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQC 80 (1085)
T ss_pred CCCccccccccccccceeeecccccccCCCccccCCceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCcc
Confidence 99999999999999999999999877789999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccccccCCCCCCCCCCCCCcccccccccCCCCCCchhhHHHhhhhccccCCCCCcccccccCCCccccccccCC
Q 001382 81 CPQCKTRYKRIKGSPRVDGDEEEDDTDDLENEFDINDRKDPHHIAEAMLSSRLNIGRGSQAYVSGITTPSEVDSVSVAQE 160 (1089)
Q Consensus 81 CpqCkt~Ykr~kgsprv~gd~ee~~~dd~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (1089)
|||||||||||||||||+|||||||+||+||||+|..++++.. +++. |++.+.... ..++ .++
T Consensus 81 CPQCkTrYkR~KgsprV~GDeeedd~DDlenEf~~~~~~~~~~-------~~~~-~~~~~~~~~---~~~~------~~~ 143 (1085)
T PLN02400 81 CPQCKTRYRRHKGSPRVEGDEDEDDVDDLENEFNYAQGNGKAR-------HQWQ-GEDIELSSS---SRHE------SQP 143 (1085)
T ss_pred CcccCCccccccCCCCCCcccccccchhhhhhhcccccccccc-------cccc-ccCccccCc---cccc------CCC
Confidence 9999999999999999999999999999999999964322111 1111 444331100 0000 147
Q ss_pred CcccccCC---CCCCCCCcCcccccCCCC---CCCcccccCCCCCCCCCCCCCCCCCCCCccccCcCccccchhhHHHHH
Q 001382 161 IPLLTYGN---EDVGISSDKHALIIPPFM---GRGKRIHPMSFPDGFMTLPPRPMDPKKDLAVYGYGTVAWKERMEEWKK 234 (1089)
Q Consensus 161 ~~~l~~~~---~~~~~~~~~~~~~~~~~~---g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 234 (1089)
+|+|++++ +|+++++++|++++++.+ |.||||||+||+|+.+|+++|.+||+||+++||||||+||||||+||+
T Consensus 144 ~p~lt~g~~~s~ei~~~~~~~~~~~~~~~~~~~~~~~vh~~p~~d~~~~~~~~~~d~~~~~~~~g~g~~~wkerv~~wk~ 223 (1085)
T PLN02400 144 IPLLTHGQPVSGEIPCATPDNQSVRTTSGPLGPAERNANSSPYIDPRQPVPVRIVDPSKDLNSYGLGNVDWKERVEGWKL 223 (1085)
T ss_pred CccccCCcccCCCCCCCCCccccccCCcccccccCCcccccCccCcccCCCccccCccccccccccCcHHHHHHHHHHHh
Confidence 89999976 899988777766666654 346999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhcccCCCC-CCCCCCCCCCCCCCCcCccCCCCCceeeeecCCCCcchhHHHHHHHHHHHHHhhhhhccccccc
Q 001382 235 KQNEKLQVVKHQGGN-GGGNNDGDGVDDPDLPMMDEGRQPLSRKLPISSSKISPYRLIILLRLVILGLFFHYRILHPVND 313 (1089)
Q Consensus 235 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~yR~~~~~~l~~l~~yl~wRi~~~~~~ 313 (1089)
||+||+.++.+.... .+|+.++++.+++|+++||++++||+||+++++++|+|||++++++|+++++||+||++|++++
T Consensus 224 ~~~k~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~~~~~~pL~~~~~i~~~~~~~yR~~~~~~lv~l~~~l~yRi~~~~~~ 303 (1085)
T PLN02400 224 KQDKNMMQMTNKYHEGKGGDMEGTGSNGDELQMADDARLPMSRVVPIPSSRLTPYRIVIILRLIILGFFLQYRVTHPVKD 303 (1085)
T ss_pred hhhhhccccccccccccccCCCCCCCCcccccccccccCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHhhccCcc
Confidence 998876655553211 1224443334477899999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhcCcccccccchhhhHhhhhhccCCCCCCCCceeEEEecCCCCCCCHHHHHHHHHHHH
Q 001382 314 AYGLWLTSVICEIWFAVSWILDQFPKWDPIVRETYLDRLSLRYEKEGKPSDLADIDIFVSTVDPMKEPPLITANTVLSIL 393 (1089)
Q Consensus 314 a~~lwl~~~~~Ei~f~~~wiL~q~~kw~Pi~R~~~~drL~~r~~~~~~~~~lP~VDvfV~T~dP~kEPp~v~~nTvls~l 393 (1089)
++|+|+++++||+||+|+|+|+|++||+||+|+||+|||++||++++++++||+|||||||+||.||||++|+|||||||
T Consensus 304 ~~~~Wl~s~~cE~wFaf~Wll~q~~Kw~Pv~R~t~~drL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiL 383 (1085)
T PLN02400 304 AYGLWLTSVICEIWFALSWLLDQFPKWYPINRETYLDRLALRYDRDGEPSQLAPVDVFVSTVDPLKEPPLVTANTVLSIL 383 (1085)
T ss_pred cHHHHHHHHHHHHHHHHHHHHccCcccccccceeCHHHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred cCCCCCCCcEEEEcCCCchhhhHHHHhhhHHHhhhhhhhhhhcCCCCCCchhhhhhccccccCCCCchhHHHHHHHHHHH
Q 001382 394 AVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRAPEWYFAQKLDYLKDKVNPSFIRERRAMKREY 473 (1089)
Q Consensus 394 a~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFCkk~~Iepr~Pe~YFs~~~d~~~~~~~~~f~~err~~kreY 473 (1089)
|+|||+|||+|||||||+|+||||||.|||+|||+||||||||+|||||||+||++|.|+++++.+|+|++|||+|||||
T Consensus 384 A~DYP~eKlscYvSDDGgS~LTf~Al~Eaa~FA~~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mK~eY 463 (1085)
T PLN02400 384 AVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEFYFAQKIDYLKDKIQPSFVKERRAMKREY 463 (1085)
T ss_pred hhcccccceEEEEecCCchHHHHHHHHHHHHHHHhhcchhhhcCCCcCCHHHHhccCCCcccCCCchhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccCCcCccccCCCCCCCCCCCCCCcchhhhhccCCCCccccCCccCcEEEEeccCCCCCCCCCchh
Q 001382 474 EEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVRDIEGNLLPRLVYVSREKRPGFDHHKKAG 553 (1089)
Q Consensus 474 ee~k~rI~~l~~~~~~~p~~~w~m~dg~~w~~~~~rdHp~iiqv~l~~~g~~d~~~~~lP~lvYvsRekrPg~~hh~KAG 553 (1089)
||||+|||+|+++++++|+++|.|+||++|||+++||||+|||||++++|+.|.+|++||+|||||||||||++||+|||
T Consensus 464 Ee~k~RIe~l~~~~~~~~~~~~~m~dgt~W~g~~~~dHp~iIqVll~~~~~~d~~g~~LP~LVYVSREKRP~~~Hh~KAG 543 (1085)
T PLN02400 464 EEFKVRINALVAKAQKIPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGHSGGLDTDGNELPRLVYVSREKRPGFQHHKKAG 543 (1085)
T ss_pred HHHHHHHHHHHhhhccCCccccccccCccCCCCCCCCCchhhhhhhcCCCCcccccccCceeEEEeccCCCCCCcchhhh
Confidence 99999999999999999999999999999999999999999999999999989999999999999999999999999999
Q ss_pred hhHHHHHhhccccCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCceEEEEecCccccCCCccccccchhhhhhhhhcc
Q 001382 554 AMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMK 633 (1089)
Q Consensus 554 alNallrvSa~~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~v~~VQ~PQ~F~nid~~D~y~n~~~vFfdi~~~ 633 (1089)
|||+|+||||+|||||||||||||||+|||+++|+||||||||+.|+++|||||||+|+|+|++|||+|+++||||++|+
T Consensus 544 AMNaLlRVSavmTNaP~ILNlDCDmY~Nns~a~r~AMCf~lD~~~g~~~afVQFPQrF~gi~~~D~Y~n~~~vffdi~~~ 623 (1085)
T PLN02400 544 AMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAIGKKTCYVQFPQRFDGIDLHDRYANRNIVFFDINLK 623 (1085)
T ss_pred hhHHHHHHhhhhcCCceEEecccccccCCchhHHhhhhheeccCCCceeEEEeCCcccCCCCCCCCcccceeEEeecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCccccccccchhhhhhcCCCCCCCCCCCCCcCCCCCCcccccccccccccccCCC-------ccCCcchhhhhh
Q 001382 634 GLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKPPRKTCNCLPKWCCCCCRSRKKSKKGKSN-------KKNKDTSKQIYA 706 (1089)
Q Consensus 634 glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~-------~~~~~~~~~~~~ 706 (1089)
|+||+|||+|+||||+|||+||||++||..+...... ..|++||+.|++.++++.+ .+..+++.++++
T Consensus 624 GldGlqGP~YvGTGC~frR~aLYG~~p~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 698 (1085)
T PLN02400 624 GLDGIQGPVYVGTGCCFNRQALYGYDPVLTEEDLEPN-----IIVKSCCGSRKKGKGSKKYNIDKKRAMKRTESNVPIFN 698 (1085)
T ss_pred ccccCCCccccccCcceeeeeeccCCCcccccccccc-----cccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999997654321111 1234577766654322111 122345678899
Q ss_pred hhhhhhhcc--ccccccCchhHHHhhhcCCchHHHHHHhHhhCCCCCCCChhhHHHHhHHhhcccccccCccccccCccc
Q 001382 707 LENIEEGIE--DNEKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGASTASLLNEAIHVISCGYEDKTDWGKEIGWIY 784 (1089)
Q Consensus 707 ~~~~~~~~~--~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~~~ea~~v~sc~YE~~T~WG~evGW~y 784 (1089)
+++++++++ +++++.++++++++++||+|++|++|++++.||.+...+++++++||++||||+||++|+||+||||+|
T Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~l~~~fG~S~~fi~S~~~~~~~~~~~~~~~~ll~eA~~V~sC~YE~~T~WG~evGwiY 778 (1085)
T PLN02400 699 MEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPSTNPATLLKEAIHVISCGYEDKTEWGKEIGWIY 778 (1085)
T ss_pred ccccccccccccchhhhhhhhhhhhhhccccHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhccCCccCCchhhhhCeec
Confidence 999999876 457777899999999999999999999999999998889999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHhCCcEEEEecCCCCcccccCCCCHHHHHHhhheecchhhHHHHhhccccccccCCCCCcccchhhh
Q 001382 785 GSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEILLSRHCPIWYGYGCGLKPLERFSYI 864 (1089)
Q Consensus 785 gSvTEDi~Tg~rLh~rGWrsvY~~p~~~Af~G~aP~tl~~~l~QR~RWA~G~lQIl~sk~~Pl~~g~~k~L~~~QRL~Yl 864 (1089)
||+|||+.||++||++||||+|++|++++|.|+||+|+.+++.||+|||+|++||++++++|+++|+.++|+++|||+|+
T Consensus 779 GSvTED~~TG~~LH~rGWrSvY~~p~r~af~GlAP~~l~d~L~Qr~RWA~G~lqI~~sr~nPl~~G~~~~L~l~QRL~Yl 858 (1085)
T PLN02400 779 GSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERLAYI 858 (1085)
T ss_pred cceechHHHHHHHHccCCceEecCCCcHhhcCcCCCCHHHHHHHHHHHhhcchheeeccCCccccccCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998777899999999999
Q ss_pred hhhhhHhHHHHHHHHHHHHHHHHHhCCcccccchhHHHHHHHHHHHHHHHHHHHHhhccCCcccccccchhhhhhhhhHH
Q 001382 865 NSVVYPITSIPLIAYCTLPAICLLTGKFIVPEISNYASILFMALFISIAATGILEMQWGGVGIHDWWRNEQFWVIGGASS 944 (1089)
Q Consensus 865 ~~~ly~l~sl~~liylllP~l~Ll~G~~ivp~~s~~~~i~fi~lfls~~~~~lLe~~wsG~s~~~wWrne~~W~I~~~sa 944 (1089)
++++||++++++++|+++|++||++|++++|.++++++++|+++|++++++++||++|+|+++++||||||||+|.++|+
T Consensus 859 ~~~~y~~~slp~liY~llP~l~LltG~~i~P~vs~~~~~~fi~lf~~~~~~~lLE~~~sG~si~~WWrnQq~w~I~~~Sa 938 (1085)
T PLN02400 859 NTIVYPITSIPLLAYCVLPAFCLITNKFIIPEISNYASMWFILLFISIFATGILELRWSGVGIEDWWRNEQFWVIGGTSA 938 (1085)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCccCCccchHHHHHHHHHHHHHHHHHHHHHhhcCccHHHhhhccceeeehhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCccceeeCCCCCCC-CCcccceeeccccchHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhHHH
Q 001382 945 HLFALIQGLLKVVGGVNTNFTVTSKAADD-GEFSDLYLFKWTSLLIPPLTLLVFNLIGVIIGVADAISNGYETWGPLFGK 1023 (1089)
Q Consensus 945 ~l~Av~~aLlk~L~g~~~~F~VTpKg~~~-~~~~~ly~f~ws~L~iP~~~Llilnliaiv~Gi~r~i~~~~~~wg~l~g~ 1023 (1089)
|+||++++++|+|++++++|.||+|..++ +.+.++|+|+||+|++|+++++++|++|+++|++++++++++.|++++++
T Consensus 939 ~Lfavl~~ilKvLgg~~~~F~VTsK~~d~~~~~~ely~f~~s~L~iP~ttl~llNlvaiv~Gv~~~i~~g~~~~g~l~~~ 1018 (1085)
T PLN02400 939 HLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDFAELYVFKWTSLLIPPTTVLLVNLVGIVAGVSYAINSGYQSWGPLFGK 1018 (1085)
T ss_pred HHHHHHHHHHHHhcCCcccceecCCcccccccccceeeecccchhHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHH
Confidence 99999999999999999999999998764 45689999999999999999999999999999999999888899999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHhheeEecCCCCC-CCc-cccccCCCC
Q 001382 1024 LFFSLWVILHLYPFLKGFLGKQDRLPTILLVWAILLASIFSLLWARVNPFVSK-GDI-VLEVCGLDC 1088 (1089)
Q Consensus 1024 l~~~~Wvl~~l~Pfl~gL~gR~~~~P~~v~~~s~~la~~f~~l~v~~~~~~~~-~~~-~~~~~~~~~ 1088 (1089)
+|+++|+++|+|||++|||||++|+|+||++||++||++|+||||+||||+++ +|| ++++|||+|
T Consensus 1019 ~~~~~wvvv~l~Pf~kgL~gR~~r~P~~v~~~s~lla~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~ 1085 (1085)
T PLN02400 1019 LFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRIDPFVSDTTKAAANGQCGVNC 1085 (1085)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHHHHHHHheeccccccCCCCchhHhhcCcCC
Confidence 99999999999999999999999999999999999999999999999999999 999 999999999
No 3
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=100.00 E-value=1.4e-312 Score=2773.71 Aligned_cols=1050 Identities=68% Similarity=1.226 Sum_probs=962.5
Q ss_pred ccccccccccccCCccccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCCccccccccCCCCCCCCCC
Q 001382 23 DEVARVTSVKELSGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRVDGDEE 102 (1089)
Q Consensus 23 ~~~~~~~~~~~~~~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Ykr~kgsprv~gd~e 102 (1089)
|++.++||++++++|+||||||+||+|+|||+|||||||+|||||||||||||||||+|||||||||||||||||+||||
T Consensus 4 ~~~~~~k~~~~~~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYkr~kgsprv~gDee 83 (1079)
T PLN02638 4 EGETGAKPMKHGGGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKRHKGSPAILGDEE 83 (1079)
T ss_pred CCCCCCCCccccCCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhcCCCCcCcccc
Confidence 56667789999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC-cccccccccCCC--CCCchhhHHHhhhhccccCCCCCcccccccCCCccccccccCCCcccccCC---CCCCCCCc
Q 001382 103 EDD-TDDLENEFDIND--RKDPHHIAEAMLSSRLNIGRGSQAYVSGITTPSEVDSVSVAQEIPLLTYGN---EDVGISSD 176 (1089)
Q Consensus 103 e~~-~dd~~~ef~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~ 176 (1089)
||+ +||+||||+|.. ++..++++|+|+||+|+||+++|....+ ++. +++ .+++|+|++|| +|++++++
T Consensus 84 ed~~~dDle~ef~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~----~~~-~~~-~~~~~~~~~g~~~~~~~~~~~~ 157 (1079)
T PLN02638 84 EDGDADDGASDFNYPSSNQDQKQKIAERMLSWRMNSGRGEDVGAPN----YDK-EVS-HNHIPLLTNGQSVSGELSAASP 157 (1079)
T ss_pred ccCcchhhhhhhccccccccchhHHHHHHhhhhcccCcCccccccc----ccc-cCC-CCCCcccccCccccCccCCCCC
Confidence 886 899999999863 2233778999999999999987622100 000 011 25789999876 88887766
Q ss_pred CcccccCCCCCCCcccccCCCCCCC-CCCCCCCCCCCCCccccCcCccccchhhHHHHHhhhhhhhhcccCC----CCCC
Q 001382 177 KHALIIPPFMGRGKRIHPMSFPDGF-MTLPPRPMDPKKDLAVYGYGTVAWKERMEEWKKKQNEKLQVVKHQG----GNGG 251 (1089)
Q Consensus 177 ~~~~~~~~~~g~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~----~~~~ 251 (1089)
+|++++++.+ .|||| ||+|+. +|.++|.|||+||+++|||||++||||||+||+||+||+.++.+.. +.++
T Consensus 158 ~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~wk~~~~k~~~~~~~~~~~~~~~~~ 233 (1079)
T PLN02638 158 ERLSMASPGA-GGKRI---PYASDVNQSPNIRVVDPVREFGSPGLGNVAWKERVDGWKMKQDKNTIPMSTGTAPSEGRGG 233 (1079)
T ss_pred ccccccCccc-cCCcc---cccccccccCCcccCCccccccccccccHHHHHHHHHHHhcccccccccccccccccccCc
Confidence 6655556653 57998 898865 7899999999999999999999999999999999987766554432 2222
Q ss_pred CCCCC-CCCCCCCCcCccCCCCCceeeeecCCCCcchhHHHHHHHHHHHHHhhhhhccccccchhhHHHHHHHHHHHHHH
Q 001382 252 GNNDG-DGVDDPDLPMMDEGRQPLSRKLPISSSKISPYRLIILLRLVILGLFFHYRILHPVNDAYGLWLTSVICEIWFAV 330 (1089)
Q Consensus 252 ~~~~~-~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~yR~~~~~~l~~l~~yl~wRi~~~~~~a~~lwl~~~~~Ei~f~~ 330 (1089)
++.++ ++.+++|+++|+++++||+||+++++++|+|||++++++|+++++||+||++|++.+++|+|+++++||+||+|
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~pL~~~~~i~~~~~~~yR~~~~~~l~~l~~~l~yRi~~~~~~~~~~Wl~s~~cE~WFaf 313 (1079)
T PLN02638 234 GDIDASTDVLMDDALLNDEARQPLSRKVSIPSSRINPYRMVIVLRLVILCIFLHYRITNPVRNAYALWLISVICEIWFAL 313 (1079)
T ss_pred CCCCCccccccccccccccCCCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHH
Confidence 33332 23346899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCcccccccchhhhHhhhhhccCCCCCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCC
Q 001382 331 SWILDQFPKWDPIVRETYLDRLSLRYEKEGKPSDLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDG 410 (1089)
Q Consensus 331 ~wiL~q~~kw~Pi~R~~~~drL~~r~~~~~~~~~lP~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG 410 (1089)
+|+|+|++||+||+|+||+|||++||++++++++||+|||||||+||.||||++|+||||||||+|||+|||+|||||||
T Consensus 314 ~Wll~q~~Kw~Pv~R~t~~drL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDG 393 (1079)
T PLN02638 314 SWILDQFPKWLPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDG 393 (1079)
T ss_pred HHHHhccccccccccccCHHHHHHHhccCCCcccCCCccEEEeCCCCccCccHHHHHHHHHHHhhcccccceeEEEecCC
Confidence 99999999999999999999999999998888999999999999999999999999999999999999999999999999
Q ss_pred chhhhHHHHhhhHHHhhhhhhhhhhcCCCCCCchhhhhhccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 001382 411 AAMLTFEALSETSEFARKWVPFCKKFKIEPRAPEWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKV 490 (1089)
Q Consensus 411 ~s~ltf~al~Eaa~FA~~WvPFCkk~~Iepr~Pe~YFs~~~d~~~~~~~~~f~~err~~kreYee~k~rI~~l~~~~~~~ 490 (1089)
+|+||||||.|||+|||+||||||||+|||||||+||++|.|+++++.+|+|++|||+|||||||||+|||+|+++++++
T Consensus 394 gS~LTf~AL~EAa~FA~~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mK~eYEe~k~RIe~l~a~~~~~ 473 (1079)
T PLN02638 394 AAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKVRINGLVAKAQKV 473 (1079)
T ss_pred chHHHHHHHHHHHHHHHhhcccccccCCCcCCHHHHhccCCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCccccCCCCCCCCCCCCCCcchhhhhccCCCCccccCCccCcEEEEeccCCCCCCCCCchhhhHHHHHhhccccCCCE
Q 001382 491 PEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVRDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPY 570 (1089)
Q Consensus 491 p~~~w~m~dg~~w~~~~~rdHp~iiqv~l~~~g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSa~~tngp~ 570 (1089)
|+++|.|+||++|||++++|||+||||+++++|+.|.+|++||+|||||||||||++||+||||||+|+||||+||||||
T Consensus 474 p~~~~~m~dgt~W~g~~~~dHp~IiqVll~~~~~~d~~g~~lP~LVYVSREKRPg~~Hh~KAGAMNaLlRVSavmTNaPf 553 (1079)
T PLN02638 474 PEEGWIMQDGTPWPGNNTRDHPGMIQVFLGHSGGLDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPF 553 (1079)
T ss_pred CCccccccCCccCCCCCCCCCHHHHHHHhcCCCccccccccccceEEEecccCCCCCcccccchHHHHHHHhhhccCCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCchHHHHHHHHhhcCCCCCceEEEEecCccccCCCccccccchhhhhhhhhccccccCCCccccccccch
Q 001382 571 LLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVF 650 (1089)
Q Consensus 571 Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~v~~VQ~PQ~F~nid~~D~y~n~~~vFfdi~~~glDg~qgp~yvGTgcvf 650 (1089)
|||||||||+|||++||+||||||||+.|+++|||||||+|||+|++|||+|+++||||++|+|+||+|||+||||||+|
T Consensus 554 ILNLDCDmYiNns~alr~AMCf~lDp~~g~~vafVQFPQrF~~i~k~D~Ygn~~~vffdi~~~GlDGlqGP~YvGTGC~f 633 (1079)
T PLN02638 554 LLNLDCDHYINNSKALREAMCFLMDPNLGKSVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVF 633 (1079)
T ss_pred EeecccCcccCchHHHHHhhhhhcCcccCCeeEEecCCcccCCCCCCCcccccceeeeccccccccccCCccccccCcce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCCCCCCCCCCCcCCCCCCcccccccccccc-cccCCC-------ccCCcchhhhhhhhhhhhhcc----ccc
Q 001382 651 RRQALYGYDAPVKKKPPRKTCNCLPKWCCCCCRSRKKS-KKGKSN-------KKNKDTSKQIYALENIEEGIE----DNE 718 (1089)
Q Consensus 651 RR~ALyG~~p~~~~~~~~~~~~~~~~~~~~c~~~~~~~-~~~~~~-------~~~~~~~~~~~~~~~~~~~~~----~~~ 718 (1089)
||+||||++||...+. +.+..+++||+..++. ++.+++ .++...+.+++++++++++.+ +++
T Consensus 634 RR~ALYG~~p~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 (1079)
T PLN02638 634 NRTALYGYEPPIKPKH------KKPGFLSSLCGGSRKKSSKSSKKGSDKKKSGKHVDPTVPVFNLEDIEEGVEGAGFDDE 707 (1079)
T ss_pred eehhhcCcCCcccccc------cccccccccccccccccccccchhhccccccccccccccccccccccccccccccchh
Confidence 9999999999864321 1121122455553322 221111 122334456777887777655 346
Q ss_pred cccCchhHHHhhhcCCchHHHHHHhHhhCCCCCCCChhhHHHHhHHhhcccccccCccccccCcccccccchHHHHHHHH
Q 001382 719 KSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGASTASLLNEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMH 798 (1089)
Q Consensus 719 ~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~~~ea~~v~sc~YE~~T~WG~evGW~ygSvTEDi~Tg~rLh 798 (1089)
++.++++..++++||+|++|++|++++.+|.+...+++++++||++|+||+||++|+||+||||+|||+|||+.||++||
T Consensus 708 ~~~~~~~~~~~~~fG~S~~fi~S~~~~~~~~~~~~~~~s~l~eA~~V~sC~YE~~T~WG~evGw~YGSvTEDv~TG~rLH 787 (1079)
T PLN02638 708 KSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATPESLLKEAIHVISCGYEDKTDWGSEIGWIYGSVTEDILTGFKMH 787 (1079)
T ss_pred hhhhhhhhhhhhhccccHHHHHHHHHhhcCCCCCCCcHHHHHHHHhhccCCCccCCchhhhcCeeecceecHHHHHHHHH
Confidence 66788999999999999999999999999999888899999999999999999999999999999999999999999999
Q ss_pred hCCcEEEEecCCCCcccccCCCCHHHHHHhhheecchhhHHHHhhccccccccCCCCCcccchhhhhhhhhHhHHHHHHH
Q 001382 799 CHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEILLSRHCPIWYGYGCGLKPLERFSYINSVVYPITSIPLIA 878 (1089)
Q Consensus 799 ~rGWrsvY~~p~~~Af~G~aP~tl~~~l~QR~RWA~G~lQIl~sk~~Pl~~g~~k~L~~~QRL~Yl~~~ly~l~sl~~li 878 (1089)
++||||+|++|+++||.|+||+|+.+++.||+|||+|++||+++|++|+++|+.++|+++|||+|+++++||++++++++
T Consensus 788 ~rGWrSvY~~P~r~AF~GlAP~~l~d~L~Qr~RWA~G~lqI~fsr~nPl~~G~~~rL~l~QRL~Yl~~~~yp~~sip~li 867 (1079)
T PLN02638 788 ARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKWLERFAYVNTTIYPITSIPLLL 867 (1079)
T ss_pred cCCCcEEecCCCchHhcCcCCCCHHHHHHHHHHHhhcchheeeccCCccccccCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999887789999999999999999999999999
Q ss_pred HHHHHHHHHHhCCcccccchhHHHHHHHHHHHHHHHHHHHHhhccCCcccccccchhhhhhhhhHHHHHHHHHHHHHHhc
Q 001382 879 YCTLPAICLLTGKFIVPEISNYASILFMALFISIAATGILEMQWGGVGIHDWWRNEQFWVIGGASSHLFALIQGLLKVVG 958 (1089)
Q Consensus 879 ylllP~l~Ll~G~~ivp~~s~~~~i~fi~lfls~~~~~lLe~~wsG~s~~~wWrne~~W~I~~~sa~l~Av~~aLlk~L~ 958 (1089)
|+++|++||++|++++|.++++++++|+++|++++++++||++|+|+++++||||||||+|.++|+|+||++++++|+|+
T Consensus 868 Y~llP~l~Ll~G~~i~P~vs~~~~~~f~~lfl~~~~~~llE~~wsG~si~~WWrnQr~w~I~~tSa~lfavl~~iLK~Lg 947 (1079)
T PLN02638 868 YCTLPAVCLLTGKFIIPQISNIASIWFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGLLKVLA 947 (1079)
T ss_pred HHHHHHHHHHcCCccCCCccchHHHHHHHHHHHHHHHHHHHHHhccccHHHHhhhhhheehhhhHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccceeeCCCCCCC-CCcccceeeccccchHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHH
Q 001382 959 GVNTNFTVTSKAADD-GEFSDLYLFKWTSLLIPPLTLLVFNLIGVIIGVADAISNGYETWGPLFGKLFFSLWVILHLYPF 1037 (1089)
Q Consensus 959 g~~~~F~VTpKg~~~-~~~~~ly~f~ws~L~iP~~~Llilnliaiv~Gi~r~i~~~~~~wg~l~g~l~~~~Wvl~~l~Pf 1037 (1089)
+++++|.||+|..++ +.++++|+|+||+|++|+++|+++|++|+++|++++++++++.|+++++++|+++|+++|+|||
T Consensus 948 gs~~~F~VTsK~~d~~~~~~ely~f~wS~l~iP~ttl~iiNlvaiv~g~~~~~~~g~~~~~~~~~~~~~~~wvv~~l~Pf 1027 (1079)
T PLN02638 948 GIDTNFTVTSKASDEDGDFAELYMFKWTTLLIPPTTLLIINLVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIVHLYPF 1027 (1079)
T ss_pred cCcccceeccccccccccccceeEecceehhHHHHHHHHHHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHH
Confidence 999999999998764 3578999999999999999999999999999999999888889999999999999999999999
Q ss_pred HHHhhcCCCCcchhHHHHHHHHHHHHHhheeEecCCCCC-CCccccccCCCC
Q 001382 1038 LKGFLGKQDRLPTILLVWAILLASIFSLLWARVNPFVSK-GDIVLEVCGLDC 1088 (1089)
Q Consensus 1038 l~gL~gR~~~~P~~v~~~s~~la~~f~~l~v~~~~~~~~-~~~~~~~~~~~~ 1088 (1089)
++|||||++|+||||++||++||++||||||+||||+++ +||++++|||+|
T Consensus 1028 ~kgl~gR~~r~P~~v~v~s~ll~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~ 1079 (1079)
T PLN02638 1028 LKGLMGRQNRTPTIVVVWSILLASIFSLLWVRIDPFTTRVTGPDVEQCGINC 1079 (1079)
T ss_pred HHHHhccCCCCCeeehHHHHHHHHHHHHHHheecccccCCCCchhhccCcCC
Confidence 999999999999999999999999999999999999999 999999999999
No 4
>PLN02189 cellulose synthase
Probab=100.00 E-value=5.6e-304 Score=2692.50 Aligned_cols=1030 Identities=68% Similarity=1.241 Sum_probs=945.5
Q ss_pred CCCCCcccccccCCceEEEeecccccccccccccCCccccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCC
Q 001382 1 MATNGRLVAGSHNRNEFVLINADEVARVTSVKELSGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQA 80 (1089)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~ 80 (1089)
||+++|||||||||||||+++.| + +.||++++++|+||||||+||+|+|||+|||||||+|||||||||||||||||+
T Consensus 1 ~~~~~g~~~gs~~r~~~~~~~~~-~-~~k~~~~~~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~ 78 (1040)
T PLN02189 1 MEASAGLVAGSHNRNELVVIHGH-E-EPKPLRNLDGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQN 78 (1040)
T ss_pred CCcccccccccccccceeeeccc-c-CCCCcccccCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCcc
Confidence 99999999999999999999977 3 458999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccccccCCCCCCCCCCCCCcccccccccCCCC-CCchhhHHHhhhhccccCCCCCcccccccCCCccccccccC
Q 001382 81 CPQCKTRYKRIKGSPRVDGDEEEDDTDDLENEFDINDR-KDPHHIAEAMLSSRLNIGRGSQAYVSGITTPSEVDSVSVAQ 159 (1089)
Q Consensus 81 CpqCkt~Ykr~kgsprv~gd~ee~~~dd~~~ef~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (1089)
|||||||||||||||||+|||||||+||+||||+|..+ ++.++++|+|++++|++|++.+... + .+
T Consensus 79 CpqCkt~Y~r~kgs~~v~gd~ee~~~dd~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~-----~~ 145 (1040)
T PLN02189 79 CPQCKTRYKRLKGSPRVEGDDDEEDIDDIEHEFNIDDEQDKNKHITEAMLHGKMSYGRGPDDDE--------N-----NQ 145 (1040)
T ss_pred CcccCCchhhccCCCCcCCccccccchhhhhhccccccccchhHHHHHHhhhhcccCCCcccCC--------C-----cC
Confidence 99999999999999999999999999999999999643 3337789999999999998876221 1 15
Q ss_pred CCcccccCC-----CCCCCCC--cCcccccCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCccccCcCccccchhhHHH
Q 001382 160 EIPLLTYGN-----EDVGISS--DKHALIIPPFMGRGKRIHPMSFPDGFMTLPPRPMDPKKDLAVYGYGTVAWKERMEEW 232 (1089)
Q Consensus 160 ~~~~l~~~~-----~~~~~~~--~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 232 (1089)
++|++++++ +|++..+ .+|++++++. .||||||+||+|. ++|.|||+||++ ||||||+|
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~----~~~~~~~~~~~~--------wk~rv~~w 211 (1040)
T PLN02189 146 FPPVITGVRSRPVSGEFPIGSGYGHGEQMLSSS--LHKRVHPYPVSEP----GSAKWDEKKEGG--------WKERMDDW 211 (1040)
T ss_pred CCcccccCccccccCCcCccccccccccccCCc--ccCccCcccccCC----CcccCCcccccc--------HHHHHHHH
Confidence 678899865 5555211 1344455554 5799999999983 468999999974 99999999
Q ss_pred HHhhhhhhhhcccCCCCCCCCCCCCCCCCCCCcCccCCCCCceeeeecCCCCcchhHHHHHHHHHHHHHhhhhhcccccc
Q 001382 233 KKKQNEKLQVVKHQGGNGGGNNDGDGVDDPDLPMMDEGRQPLSRKLPISSSKISPYRLIILLRLVILGLFFHYRILHPVN 312 (1089)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~yR~~~~~~l~~l~~yl~wRi~~~~~ 312 (1089)
|+||+ ..+++ + +++++|+++++++++||+||+++++++++|||++++++|+++++||+||++|++.
T Consensus 212 k~~~~-------~~~~~------~-~~~~~d~~~~~~~~~pL~~~~~~~~~~~~pyR~~~~~~l~~l~~~l~yRi~~~~~ 277 (1040)
T PLN02189 212 KMQQG-------NLGPD------P-DDYDADMALIDEARQPLSRKVPIASSKVNPYRMVIVARLVVLAFFLRYRILHPVH 277 (1040)
T ss_pred Hhhcc-------cCCCC------C-CCCchhhhhcccCCCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHhcCcCc
Confidence 99995 11111 1 2235678888999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhcCcccccccchhhhHhhhhhccCCCCCCCCceeEEEecCCCCCCCHHHHHHHHHHH
Q 001382 313 DAYGLWLTSVICEIWFAVSWILDQFPKWDPIVRETYLDRLSLRYEKEGKPSDLADIDIFVSTVDPMKEPPLITANTVLSI 392 (1089)
Q Consensus 313 ~a~~lwl~~~~~Ei~f~~~wiL~q~~kw~Pi~R~~~~drL~~r~~~~~~~~~lP~VDvfV~T~dP~kEPp~v~~nTvls~ 392 (1089)
+++|+|+++++||+||+|+|+|+|++||+||+|+||+|||++||++++++++||+|||||||+||.||||++|+||||||
T Consensus 278 ~~~~~W~~s~~~E~wFaf~Wll~q~~kw~Pv~R~t~~drL~~r~~~~~~~~~LP~vDvFV~TADP~kEPPl~t~NTVLSi 357 (1040)
T PLN02189 278 DAIGLWLTSIICEIWFAVSWILDQFPKWFPIDRETYLDRLSLRYEREGEPNMLSPVDIFVSTVDPLKEPPLVTANTVLSI 357 (1040)
T ss_pred cchHHHHHHHHHHHHHHHHHHHccCcccccccceeCHHHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998888999999999999999999999999999999
Q ss_pred HcCCCCCCCcEEEEcCCCchhhhHHHHhhhHHHhhhhhhhhhhcCCCCCCchhhhhhccccccCCCCchhHHHHHHHHHH
Q 001382 393 LAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRAPEWYFAQKLDYLKDKVNPSFIRERRAMKRE 472 (1089)
Q Consensus 393 la~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFCkk~~Iepr~Pe~YFs~~~d~~~~~~~~~f~~err~~kre 472 (1089)
||+|||+|||+|||||||+|+||||||.|||+|||+||||||||+|||||||+||++|.|+++++.+|+|++|||+||||
T Consensus 358 LA~DYP~eKlscYvSDDGgS~LTf~AL~EAa~FA~~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~~K~e 437 (1040)
T PLN02189 358 LAMDYPVDKISCYVSDDGASMLTFEALSETAEFARKWVPFCKKFSIEPRAPEFYFSLKVDYLKDKVQPTFVKERRAMKRE 437 (1040)
T ss_pred HhhcccccceeEEEecCCchHHHHHHHHHHHHHHHhhcccccccCCCcCCHHHHhccCCCcccccCCchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhccCCcCccccCCCCCCCCCCCCCCcchhhhhccCCCCccccCCccCcEEEEeccCCCCCCCCCch
Q 001382 473 YEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVRDIEGNLLPRLVYVSREKRPGFDHHKKA 552 (1089)
Q Consensus 473 Yee~k~rI~~l~~~~~~~p~~~w~m~dg~~w~~~~~rdHp~iiqv~l~~~g~~d~~~~~lP~lvYvsRekrPg~~hh~KA 552 (1089)
|||||+|||+++++++++|+++|.|+||++|||++++|||+||||+++++|+.|.+|++||+|||||||||||++||+||
T Consensus 438 YEe~kvRI~~l~a~~~~~p~~~~~m~dGt~W~g~~~~dHp~IiQVll~~~~~~d~~g~~lP~LVYVSREKrPg~~Hh~KA 517 (1040)
T PLN02189 438 YEEFKVRINAIVAKAQKVPPEGWIMQDGTPWPGNNTRDHPGMIQVFLGHSGGHDTEGNELPRLVYVSREKRPGFQHHKKA 517 (1040)
T ss_pred HHHHHHHHHHHHhhcCccCCccceeccCccCCCCCCCCCHHHHHHHhcCCCCccccccccceeEEEeccCCCCCCcccch
Confidence 99999999999999999999999999999999999999999999999999988999999999999999999999999999
Q ss_pred hhhHHHHHhhccccCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCceEEEEecCccccCCCccccccchhhhhhhhhc
Q 001382 553 GAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINM 632 (1089)
Q Consensus 553 GalNallrvSa~~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~v~~VQ~PQ~F~nid~~D~y~n~~~vFfdi~~ 632 (1089)
||||+|+||||+|||||||||||||||+|||++||+||||||||+.|+++|||||||+|||+|++|||+|++++|||++|
T Consensus 518 GAMNaLlRVSavmTNaPfILNLDCDmY~Nns~alr~AMCfflDp~~g~~vAfVQFPQrF~~i~k~D~Ygn~~~vffdi~~ 597 (1040)
T PLN02189 518 GAMNALIRVSAVLTNAPFMLNLDCDHYINNSKAVREAMCFLMDPQIGRKVCYVQFPQRFDGIDTHDRYANRNTVFFDINM 597 (1040)
T ss_pred hhHHHHHHHhhhccCCCeEEEccCccccCchHHHHHhhhhhcCCccCceeEEEeCccccCCCCCCCccCCccceeeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCccccccccchhhhhhcCCCCCCCCCCCCCcCCCCCCcccccccccccccccCCCccCCcchhhhhhhhhhhh
Q 001382 633 KGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKPPRKTCNCLPKWCCCCCRSRKKSKKGKSNKKNKDTSKQIYALENIEE 712 (1089)
Q Consensus 633 ~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 712 (1089)
+|+||+|||+||||||+|||+||||++|+...+.+...+ .+++||..++++++. +.....+ ...++
T Consensus 598 ~GlDGlqGP~YvGTGC~fRR~ALyG~~p~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~~~----~~~~~---- 663 (1040)
T PLN02189 598 KGLDGIQGPVYVGTGCVFRRQALYGYDPPKGPKRPKMVT-----CDCCPCFGRRKKKHA-KNGLNGE----VAALG---- 663 (1040)
T ss_pred cccccCCCccccccCceeeeeeeeccCcccccccccccc-----cchhhhccccccccc-ccccccc----ccccc----
Confidence 999999999999999999999999999876543222221 123344443321111 0000000 00011
Q ss_pred hccccccccCchhHHHhhhcCCchHHHHHHhHhhCCCCCCCChhhHHHHhHHhhcccccccCccccccCcccccccchHH
Q 001382 713 GIEDNEKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGASTASLLNEAIHVISCGYEDKTDWGKEIGWIYGSVTEDIL 792 (1089)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~~~ea~~v~sc~YE~~T~WG~evGW~ygSvTEDi~ 792 (1089)
+ .+++++.++++++++++||+|.+|++|++.+.+|.+....++++++||++|+||+||++|+||+||||.|||+|||+.
T Consensus 664 ~-~~~~~~~~~~~~~~~~~fG~S~~fi~S~~~~~~~~~~~~~~~~~l~eA~~V~sC~YE~~T~WG~evGw~YGSvTED~~ 742 (1040)
T PLN02189 664 G-MESDKEMLMSQMNFEKKFGQSAIFVTSTLMEEGGVPPSSSPAALLKEAIHVISCGYEDKTDWGLELGWIYGSITEDIL 742 (1040)
T ss_pred c-cchhhhhhhhhhhhHhhhccchhhhhhhhhhhcCCCCCCCcHHHHHHHHHhhccccccCCchhhccCeeccccccHHH
Confidence 1 122445567889999999999999999999999988888889999999999999999999999999999999999999
Q ss_pred HHHHHHhCCcEEEEecCCCCcccccCCCCHHHHHHhhheecchhhHHHHhhccccccccC-CCCCcccchhhhhhhhhHh
Q 001382 793 TGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEILLSRHCPIWYGYG-CGLKPLERFSYINSVVYPI 871 (1089)
Q Consensus 793 Tg~rLh~rGWrsvY~~p~~~Af~G~aP~tl~~~l~QR~RWA~G~lQIl~sk~~Pl~~g~~-k~L~~~QRL~Yl~~~ly~l 871 (1089)
||++||++||||+|++|+++||.|+||+|+.+++.||+|||+|++||+++++||+++|+. ++|+++|||+|+++++||+
T Consensus 743 TG~rlH~rGWrSvY~~p~r~AF~GlAP~~L~~~L~Qr~RWA~G~lqI~~sr~nPl~~g~~~~~L~l~QRL~Yl~~~ly~~ 822 (1040)
T PLN02189 743 TGFKMHCRGWRSIYCMPKRAAFKGSAPINLSDRLNQVLRWALGSVEIFFSRHSPLLYGYKGGNLKWLERFAYVNTTIYPF 822 (1040)
T ss_pred HHHHHHccCCceEecCCCcHHhcCcCCCCHHHHHHHHHHHhhhhHHHhhccCCccccccCCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998763 6799999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCcccccchhHHHHHHHHHHHHHHHHHHHHhhccCCcccccccchhhhhhhhhHHHHHHHHH
Q 001382 872 TSIPLIAYCTLPAICLLTGKFIVPEISNYASILFMALFISIAATGILEMQWGGVGIHDWWRNEQFWVIGGASSHLFALIQ 951 (1089)
Q Consensus 872 ~sl~~liylllP~l~Ll~G~~ivp~~s~~~~i~fi~lfls~~~~~lLe~~wsG~s~~~wWrne~~W~I~~~sa~l~Av~~ 951 (1089)
+++++++|+++|++||++|++++|.++++++++|+++|+++++++++|++|+|+++++||||||||+|.++|+|+||+++
T Consensus 823 ~sip~liY~~lP~l~Ll~g~~i~p~vs~~~~~~fi~lf~~~~~~~llE~~~sG~s~~~WWrnQq~w~I~~~Sa~Lfavl~ 902 (1040)
T PLN02189 823 TSLPLLAYCTLPAICLLTGKFIMPPISTFASLFFIALFMSIFATGILELRWSGVSIEEWWRNEQFWVIGGVSAHLFAVVQ 902 (1040)
T ss_pred HHHHHHHHHHHHHHHHhcCCcccCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHhhhhhHHHHhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCccceeeCCCCCCCCCcccceeeccccchHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHH
Q 001382 952 GLLKVVGGVNTNFTVTSKAADDGEFSDLYLFKWTSLLIPPLTLLVFNLIGVIIGVADAISNGYETWGPLFGKLFFSLWVI 1031 (1089)
Q Consensus 952 aLlk~L~g~~~~F~VTpKg~~~~~~~~ly~f~ws~L~iP~~~Llilnliaiv~Gi~r~i~~~~~~wg~l~g~l~~~~Wvl 1031 (1089)
+++|+|++++++|.||+|..+++.++++|+|+||+|++|+++|+++|++|+++|++++++++++.|+++++++|+++|++
T Consensus 903 ~ilKvlggs~~~F~VTsK~~~d~~~~~ly~f~~s~l~iP~ttl~i~Nlvaiv~g~~~~~~~~~~~~~~~~~~~~~~~wvv 982 (1040)
T PLN02189 903 GLLKVLAGIDTNFTVTSKATDDDEFGELYAFKWTTLLIPPTTLLIINIVGVVAGISDAINNGYQSWGPLFGKLFFAFWVI 982 (1040)
T ss_pred HHHHHhccCcccceeccccccccccccceeecceeHhHHHHHHHHHHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHH
Confidence 99999999999999999998888888999999999999999999999999999999999888889999999999999999
Q ss_pred HHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHhheeEecCCCCC-CCccccccCCCC
Q 001382 1032 LHLYPFLKGFLGKQDRLPTILLVWAILLASIFSLLWARVNPFVSK-GDIVLEVCGLDC 1088 (1089)
Q Consensus 1032 ~~l~Pfl~gL~gR~~~~P~~v~~~s~~la~~f~~l~v~~~~~~~~-~~~~~~~~~~~~ 1088 (1089)
+|+|||++|||||++|+||||++||++|+++|+||||+||||+++ +||++++|||+|
T Consensus 983 ~~~~Pf~kgl~gR~~r~P~~v~v~s~ll~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~ 1040 (1040)
T PLN02189 983 VHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVLKTKGPDVKQCGINC 1040 (1040)
T ss_pred HHHHHHHHHHhccCCCCCeeehHHHHHHHHHHHHHHheecccccCCCCchhhccCcCC
Confidence 999999999999999999999999999999999999999999999 999999999999
No 5
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=100.00 E-value=2.4e-301 Score=2670.32 Aligned_cols=999 Identities=68% Similarity=1.274 Sum_probs=926.6
Q ss_pred ccccCCccccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCCccccccccCCCCCCCC-CCCCCcccc
Q 001382 31 VKELSGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRVDGD-EEEDDTDDL 109 (1089)
Q Consensus 31 ~~~~~~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Ykr~kgsprv~gd-~ee~~~dd~ 109 (1089)
-++.++|+||||||+||+|+|||+|||||||+|||||||||||||||||+|||||||||||||||||+|| |||+++||+
T Consensus 10 ~~~~~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~~~~~~~~~~~d~~~~~~~dd~ 89 (1044)
T PLN02915 10 RQSADAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYKRHKGCPRVEGDDEEGNDMDDF 89 (1044)
T ss_pred ccCCCcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhcCCCCccCCccccccchhh
Confidence 3778999999999999999999999999999999999999999999999999999999999999999999 567889999
Q ss_pred cccccCCCCCCchhhHHHhhhhccccCCCCCcccccccCCCccccccccCCCcccccCCCCCCCCCcCcccccCCCCCCC
Q 001382 110 ENEFDINDRKDPHHIAEAMLSSRLNIGRGSQAYVSGITTPSEVDSVSVAQEIPLLTYGNEDVGISSDKHALIIPPFMGRG 189 (1089)
Q Consensus 110 ~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~ 189 (1089)
||||++...+++ +.|++++|++|++.+.... .. .+++|++++ ++|++
T Consensus 90 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-------~~----~~~~~~~~~-~~~~~----------------- 136 (1044)
T PLN02915 90 EDEFQIKSPQDH----EPVHQNVFAGSENGDYNAQ-------QW----RPGGPAFSS-TGSVA----------------- 136 (1044)
T ss_pred hhhhcccccccc----chhhhhhccCCCCcccccc-------cc----CCCCccccC-CCCcC-----------------
Confidence 999998653322 2388999999888652110 00 134555555 33322
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCccccCcCccccchhhHHHHHhhhhhhhhcccCCCCCCCCCCCCCCCCCCCcCccC
Q 001382 190 KRIHPMSFPDGFMTLPPRPMDPKKDLAVYGYGTVAWKERMEEWKKKQNEKLQVVKHQGGNGGGNNDGDGVDDPDLPMMDE 269 (1089)
Q Consensus 190 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (1089)
-+.+||+|| ||||++||||||+||+||+ |++.+.+..++ .++ ..+++|+++|++
T Consensus 137 ----------------~~~~~~~~~----~~g~~~wk~r~~~wk~~~~-~~~~~~~~~~~----~~~-~~~~~~~~~~~~ 190 (1044)
T PLN02915 137 ----------------GKDLEAERE----GYGNAEWKDRVDKWKTRQE-KRGLVNKDDSD----DGD-DKGDEEEYLLAE 190 (1044)
T ss_pred ----------------CCCcCcccc----CcCCHHHHHHHHHHHhhhh-hhccccccccC----CCC-CCCCcccccccc
Confidence 135889998 9999999999999999997 44444443221 111 223678899999
Q ss_pred CCCCceeeeecCCCCcchhHHHHHHHHHHHHHhhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhcCcccccccchhh
Q 001382 270 GRQPLSRKLPISSSKISPYRLIILLRLVILGLFFHYRILHPVNDAYGLWLTSVICEIWFAVSWILDQFPKWDPIVRETYL 349 (1089)
Q Consensus 270 ~~~pl~~~~~~~~~~~~~yR~~~~~~l~~l~~yl~wRi~~~~~~a~~lwl~~~~~Ei~f~~~wiL~q~~kw~Pi~R~~~~ 349 (1089)
+++||+||+++++++|+|||++++++|+++++||+||++|++.+++|+|+++++||+||+|+|+|+|++||+||+|+||+
T Consensus 191 ~~~pL~~~~~i~~~~~~pyR~~~~~rlv~l~~fl~yRi~~~~~~a~~~Wl~s~~cE~wFaf~Wll~q~~Kw~Pv~R~t~~ 270 (1044)
T PLN02915 191 ARQPLWRKVPIPSSKINPYRIVIVLRLVILCFFFRFRILTPAYDAYPLWLISVICEIWFALSWILDQFPKWFPINRETYL 270 (1044)
T ss_pred cCCCceEEEecCcccchhHHHHHHHHHHHHHHHHHHHhcCcCCCchHHHHHHHHHHHHHHHHHHHccCccccccccccCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhhhhccCCCCCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCchhhhHHHHhhhHHHhhhh
Q 001382 350 DRLSLRYEKEGKPSDLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKW 429 (1089)
Q Consensus 350 drL~~r~~~~~~~~~lP~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~W 429 (1089)
|||++||++++++++||+|||||||+||.||||++|+||||||||+|||+|||+|||||||+|+||||||.|||+|||+|
T Consensus 271 drL~~r~e~~~~~~~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~AL~EAa~FAk~W 350 (1044)
T PLN02915 271 DRLSMRFERDGEPNRLAPVDVFVSTVDPLKEPPIITANTVLSILAVDYPVDKVSCYVSDDGASMLLFDTLSETAEFARRW 350 (1044)
T ss_pred HHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceeEEEecCCchHhHHHHHHHHHHHHHhh
Confidence 99999999998889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcCCCCCCchhhhhhccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCCcCccccCCCCCCCCCCCC
Q 001382 430 VPFCKKFKIEPRAPEWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVR 509 (1089)
Q Consensus 430 vPFCkk~~Iepr~Pe~YFs~~~d~~~~~~~~~f~~err~~kreYee~k~rI~~l~~~~~~~p~~~w~m~dg~~w~~~~~r 509 (1089)
|||||||+|||||||+||+++.|+++++++|+|++|||+|||||||||+|||+|+++++++|+++|.|+|||+|||+++|
T Consensus 351 vPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mKreYEe~K~RIe~l~~~~~~~~~~~~~m~dgt~W~g~~~~ 430 (1044)
T PLN02915 351 VPFCKKHNIEPRAPEFYFSQKIDYLKDKVQPTFVKERRAMKREYEEFKVRINALVAKAQKKPEEGWVMQDGTPWPGNNTR 430 (1044)
T ss_pred cchhhhcCCCcCCHHHHhccCCCccccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccccCCccCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchhhhhccCCCCccccCCccCcEEEEeccCCCCCCCCCchhhhHHHHHhhccccCCCEEEEecCCCCCCchHHHHHH
Q 001382 510 DHPGMIQVFLGQNGVRDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREA 589 (1089)
Q Consensus 510 dHp~iiqv~l~~~g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSa~~tngp~Il~lDcD~~~~~p~~Lr~a 589 (1089)
|||+|||||++++|+.|.+|++||+|||||||||||++||+||||||+|+||||+|||||||||||||||+|||+++|+|
T Consensus 431 dHp~IIqVll~~~~~~d~~g~~lP~LVYVSREKRP~~~Hh~KAGAMNaLlRVSavmTNaP~iLNlDCDmY~Nns~a~r~A 510 (1044)
T PLN02915 431 DHPGMIQVYLGSEGALDVEGKELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYINNSKAVREA 510 (1044)
T ss_pred CCccceEEeecCCCCcccccCccceeEEEecccCCCCCcchhhhhhhhHhhhhheeecCcEEEeeccccccCcchhhHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCceEEEEecCccccCCCccccccchhhhhhhhhccccccCCCccccccccchhhhhhcCCCCCCCCCCCCC
Q 001382 590 MCFMMDPTSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKPPRK 669 (1089)
Q Consensus 590 mcff~Dp~~g~~v~~VQ~PQ~F~nid~~D~y~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~ 669 (1089)
|||||||+.|+++|||||||+|+|+|++|||+|+++||||++|+|+||+|||+||||||+|||+||||++||..++.++.
T Consensus 511 MCf~lD~~~g~~~afVQFPQrF~gidk~D~Y~n~~~Vffdi~~~GldGlqGP~YvGTGCffrR~aLYG~~pp~~~~~~~~ 590 (1044)
T PLN02915 511 MCFLMDPQLGKKLCYVQFPQRFDGIDRHDRYANRNVVFFDINMKGLDGIQGPVYVGTGCVFNRQALYGYDPPVSEKRPKM 590 (1044)
T ss_pred ceeeecCCCCCeeEEEeCCcccCCCCCCCCcCccceEEEeeecccccccCCcccccCCceeeeeeecCcCCccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988777788
Q ss_pred cCCCCCCcccccccccccccccCCC-c----------------------------cCCcchhhhhhhhhhhhhcc---cc
Q 001382 670 TCNCLPKWCCCCCRSRKKSKKGKSN-K----------------------------KNKDTSKQIYALENIEEGIE---DN 717 (1089)
Q Consensus 670 ~~~~~~~~~~~c~~~~~~~~~~~~~-~----------------------------~~~~~~~~~~~~~~~~~~~~---~~ 717 (1089)
+++||+.||++||+.+++++++.++ . ...+++.+.+++++++++++ +.
T Consensus 591 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (1044)
T PLN02915 591 TCDCWPSWCCCCCGGGRRGKSKKSKKGKKGRRSLLGGLKKRKKKGGGGGSMMGKKYGRKKSQAVFDLEEIEEGLEGYDEL 670 (1044)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccch
Confidence 8999999999899887764332110 0 01123456788999998776 33
Q ss_pred ccccCchhHHHhhhcCCchHHHHHHhHhhCCCCCCCChhhHHHHhHHhhcccccccCccccccCcccccccchHHHHHHH
Q 001382 718 EKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGASTASLLNEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKM 797 (1089)
Q Consensus 718 ~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~~~ea~~v~sc~YE~~T~WG~evGW~ygSvTEDi~Tg~rL 797 (1089)
+++.+++++.++++||+|++|++|++++.+|.+...+++++++||++||||+||++|+||+||||.|||+|||+.||++|
T Consensus 671 ~~~~~~~~~~~~~~fG~S~~fi~S~~~~~~~~~~~~~~~s~l~eA~~V~sC~YE~~T~WG~evGw~YGSvTEDv~TG~rL 750 (1044)
T PLN02915 671 EKSSLMSQKNFEKRFGQSPVFIASTLMEDGGLPEGTNPAALIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKM 750 (1044)
T ss_pred hhhhhhhhhhhhhhcCCcHHHHHHHHHhhcCCCCCCCcHHHHHHHHhccccCCCccCchhHhhCccccccccHHHHHHHH
Confidence 67778999999999999999999999999999988889999999999999999999999999999999999999999999
Q ss_pred HhCCcEEEEecCCCCcccccCCCCHHHHHHhhheecchhhHHHHhhccccccccCCCCCcccchhhhhhhhhHhHHHHHH
Q 001382 798 HCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEILLSRHCPIWYGYGCGLKPLERFSYINSVVYPITSIPLI 877 (1089)
Q Consensus 798 h~rGWrsvY~~p~~~Af~G~aP~tl~~~l~QR~RWA~G~lQIl~sk~~Pl~~g~~k~L~~~QRL~Yl~~~ly~l~sl~~l 877 (1089)
|++||||+|++|+++||.|+||+|+.++++||+|||+|++||++++++|+++++.++|+++||++|+++++||+++++++
T Consensus 751 H~rGWrSvY~~p~r~AF~GlAP~~L~d~L~Qr~RWA~G~lqIf~sr~~Pl~~g~~~~L~l~QRL~Yl~~~~yp~~slp~l 830 (1044)
T PLN02915 751 HCRGWKSVYCMPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFMSRHCPLWYAYGGKLKWLERLAYINTIVYPFTSIPLL 830 (1044)
T ss_pred HccCCcEEeeCCCcHHhcCcCCCCHHHHHHHHHHHhhhHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999987678999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCcccccchhHHHHHHHHHHHHHHHHHHHHhhccCCcccccccchhhhhhhhhHHHHHHHHHHHHHHh
Q 001382 878 AYCTLPAICLLTGKFIVPEISNYASILFMALFISIAATGILEMQWGGVGIHDWWRNEQFWVIGGASSHLFALIQGLLKVV 957 (1089)
Q Consensus 878 iylllP~l~Ll~G~~ivp~~s~~~~i~fi~lfls~~~~~lLe~~wsG~s~~~wWrne~~W~I~~~sa~l~Av~~aLlk~L 957 (1089)
+|+++|++||++|++++|.++.+++++|+++|++++++++++++|+|+++++||||||||+|+++|+|+||++++++|+|
T Consensus 831 iY~llP~l~LLtG~~i~P~~s~~~~~~f~~lfls~~~~~lLE~~wsG~si~~WWrnQq~w~I~~tSa~Lfavl~~iLKvL 910 (1044)
T PLN02915 831 AYCTIPAVCLLTGKFIIPTLNNLASIWFLALFLSIIATSVLELRWSGVSIEDLWRNEQFWVIGGVSAHLFAVFQGLLKVL 910 (1044)
T ss_pred HHHHHHHHHHHcCCcccCccchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999988887788889999999999999999999999999999999999999999999999999999
Q ss_pred cCCccceeeCCCCCCCC--CcccceeeccccchHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHHHHHH
Q 001382 958 GGVNTNFTVTSKAADDG--EFSDLYLFKWTSLLIPPLTLLVFNLIGVIIGVADAISNGYETWGPLFGKLFFSLWVILHLY 1035 (1089)
Q Consensus 958 ~g~~~~F~VTpKg~~~~--~~~~ly~f~ws~L~iP~~~Llilnliaiv~Gi~r~i~~~~~~wg~l~g~l~~~~Wvl~~l~ 1035 (1089)
++++++|+||+|+.+++ .++++|+|+||++++|+++++++|++|+++|++++++++++.||++++++|+++|+++|+|
T Consensus 911 g~se~~F~VTsK~~d~~~d~~~ely~F~~S~l~iP~ttllllNlvalv~Gi~~~i~~~~~~~g~l~~~l~~~~wvvv~ly 990 (1044)
T PLN02915 911 GGVDTNFTVTSKAADDEADEFGELYLFKWTTLLIPPTTLIILNMVGVVAGVSDAINNGYGSWGPLFGKLFFAFWVIVHLY 990 (1044)
T ss_pred cccCCcceecCCccccchhhhccceeecceehHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHH
Confidence 99999999999987633 4578999999999999999999999999999999998888899999999999999999999
Q ss_pred HHHHHhhcCCCCcchhHHHHHHHHHHHHHhheeEecCCCCC-CCccccccCCCC
Q 001382 1036 PFLKGFLGKQDRLPTILLVWAILLASIFSLLWARVNPFVSK-GDIVLEVCGLDC 1088 (1089)
Q Consensus 1036 Pfl~gL~gR~~~~P~~v~~~s~~la~~f~~l~v~~~~~~~~-~~~~~~~~~~~~ 1088 (1089)
||++|||||++|+||||++||++||++|+||||+||||+++ +||++++|||+|
T Consensus 991 Pf~kgLmgR~~r~P~~v~v~s~lla~~~~ll~v~~~~~~~~~~~~~~~~~~~~~ 1044 (1044)
T PLN02915 991 PFLKGLMGRQNRTPTIVVLWSILLASIFSLVWVRIDPFLPKQTGPILKQCGVEC 1044 (1044)
T ss_pred HHHHHHhCCCCCCCeeehHHHHHHHHHHHHHHheeccccCCCCCccccccCCCC
Confidence 99999999999999999999999999999999999999999 999999999999
No 6
>PLN02195 cellulose synthase A
Probab=100.00 E-value=8.6e-285 Score=2515.56 Aligned_cols=967 Identities=65% Similarity=1.227 Sum_probs=881.1
Q ss_pred ccCCccccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCCccccccccCCCCCCCCCCCCCccccccc
Q 001382 33 ELSGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRVDGDEEEDDTDDLENE 112 (1089)
Q Consensus 33 ~~~~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Ykr~kgsprv~gd~ee~~~dd~~~e 112 (1089)
+.++|+||||||+||+|+|||+|||||||+|||||||||||||||||+||||||||| ||||+||+|||
T Consensus 3 ~~~~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk------------~~~~~~d~~~~ 70 (977)
T PLN02195 3 ESGAPICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD------------AENVFDDVETK 70 (977)
T ss_pred cCCCccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc------------cccccchhhhh
Confidence 467899999999999999999999999999999999999999999999999999998 57789999999
Q ss_pred ccCCCCCCchhhHHHhhhhccccCCCCCcccccccCCCccccccccCCCcccccCCCCCCCCCcCcccccCCCCCCCccc
Q 001382 113 FDINDRKDPHHIAEAMLSSRLNIGRGSQAYVSGITTPSEVDSVSVAQEIPLLTYGNEDVGISSDKHALIIPPFMGRGKRI 192 (1089)
Q Consensus 113 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~v 192 (1089)
|+-+ .+++ .++|++|++.+ . + .+++|++++.++|
T Consensus 71 ~~~~----~~~~-----~~~~~~~~~~~--~---------~----~~~~~~~~~~~~~---------------------- 104 (977)
T PLN02195 71 HSRN----QSTM-----ASHLNDTQDVG--I---------H----ARHISSVSTVDSE---------------------- 104 (977)
T ss_pred hccc----hhhh-----hhhcccCcCCC--C---------C----CccccccccCCCc----------------------
Confidence 9421 1332 37787776532 0 0 0233444331111
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCccccCcCccccchhhHHHHHhhhhhhhhcccCCCCCCCCCCCCCCCCCCCcCccCCCC
Q 001382 193 HPMSFPDGFMTLPPRPMDPKKDLAVYGYGTVAWKERMEEWKKKQNEKLQVVKHQGGNGGGNNDGDGVDDPDLPMMDEGRQ 272 (1089)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (1089)
+ + | +|||++||||||+||.||+||+.++.+.+. ..++.++ +++++|+++ ||.++
T Consensus 105 ----------------~-~--~----~~~~~~wk~r~~~wk~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~-~~~~~ 158 (977)
T PLN02195 105 ----------------L-N--D----EYGNPIWKNRVESWKDKKNKKKKSAKKKEA-HKAQIPP-EQQMEEKPS-ADAYE 158 (977)
T ss_pred ----------------c-c--C----ccCCHHHHHHHHHHHHhhhhhccccccccc-cccCCCC-ccCCccccc-ccccC
Confidence 0 1 1 399999999999999999877765554432 1123332 334678886 99999
Q ss_pred CceeeeecCCCCcchhHHHHHHHHHHHHHhhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhcCcccccccchhhhHh
Q 001382 273 PLSRKLPISSSKISPYRLIILLRLVILGLFFHYRILHPVNDAYGLWLTSVICEIWFAVSWILDQFPKWDPIVRETYLDRL 352 (1089)
Q Consensus 273 pl~~~~~~~~~~~~~yR~~~~~~l~~l~~yl~wRi~~~~~~a~~lwl~~~~~Ei~f~~~wiL~q~~kw~Pi~R~~~~drL 352 (1089)
||+||+++++++++|||++++++|+++++||+||++|++++++|+|+++++||+||+|+|+|+|++||+||+|+||+|||
T Consensus 159 pL~~~~~i~~~~~~pyR~~~~~~l~~l~~~l~yRi~~~~~~~~~~Wl~s~~cE~wFaf~Wll~q~~Kw~Pv~R~t~~drL 238 (977)
T PLN02195 159 PLSRVIPIPRNKLTPYRAVIIMRLIILGLFFHYRITNPVDSAFGLWLTSVICEIWFAFSWVLDQFPKWSPINRETYIDRL 238 (977)
T ss_pred CceEEEecCcccchhHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHhcccccccccceECHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCCCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCchhhhHHHHhhhHHHhhhhhhh
Q 001382 353 SLRYEKEGKPSDLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPF 432 (1089)
Q Consensus 353 ~~r~~~~~~~~~lP~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPF 432 (1089)
++||++|+++++||+|||||||+||.||||++|+|||||+||+|||+|||+|||||||+|+||||||.|||+|||+||||
T Consensus 239 ~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~AL~EAa~FA~~WvPF 318 (977)
T PLN02195 239 SARYEREGEPSQLAAVDFFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLSFESLVETAEFARKWVPF 318 (977)
T ss_pred HHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceEEEEecCCchHHHHHHHHHHHHHHHhhccc
Confidence 99999988899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCCchhhhhhccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCCcCccccCCCCCCCCCCCCCCc
Q 001382 433 CKKFKIEPRAPEWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHP 512 (1089)
Q Consensus 433 Ckk~~Iepr~Pe~YFs~~~d~~~~~~~~~f~~err~~kreYee~k~rI~~l~~~~~~~p~~~w~m~dg~~w~~~~~rdHp 512 (1089)
||||+|||||||+||++|.|+++++.+|+|++|||+|||||||||+|||+|+++++++|+++|.|+||++|||+++||||
T Consensus 319 CkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~~K~eYEe~k~RIe~~~~~~~~~~~~~~~m~d~t~W~g~~~~dHp 398 (977)
T PLN02195 319 CKKYSIEPRAPEFYFSQKIDYLKDKVQPSFVKERRAMKRDYEEYKVRVNALVAKAQKTPEEGWTMQDGTPWPGNNTRDHP 398 (977)
T ss_pred ccccCCCcCCHHHHhccCCCcccCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcccccccCCccCCCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhccCCCCccccCCccCcEEEEeccCCCCCCCCCchhhhHHHHHhhccccCCCEEEEecCCCCCCchHHHHHHHHh
Q 001382 513 GMIQVFLGQNGVRDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCF 592 (1089)
Q Consensus 513 ~iiqv~l~~~g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSa~~tngp~Il~lDcD~~~~~p~~Lr~amcf 592 (1089)
+|||||++++|+.|.+|++||+|||||||||||++||+||||||+|+||||+|||||||||||||||+|||++||+||||
T Consensus 399 ~IIqVll~~~~~~d~~g~~lP~LVYVSREKrPg~~Hh~KAGamNallrvSavmTNap~il~lDcDmy~n~s~~lr~AMCf 478 (977)
T PLN02195 399 GMIQVFLGETGARDIEGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCF 478 (977)
T ss_pred chhhhhccCCCCcccccccCceeEEEeccCCCCCCcccccchhHHHHHHhhhccCCCeEEEecCccccCcHHHHHHHHhh
Confidence 99999999999899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCceEEEEecCccccCCCccccccchhhhhhhhhccccccCCCccccccccchhhhhhcCCCCCCCCCCCCCcCC
Q 001382 593 MMDPTSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKPPRKTCN 672 (1089)
Q Consensus 593 f~Dp~~g~~v~~VQ~PQ~F~nid~~D~y~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~ 672 (1089)
|+||+.|+++|||||||+|+|+|++|+|+|++++|||++|+|+||+|||+||||||+|||+||||++|+..++.+...+.
T Consensus 479 ~~D~~~g~~va~VQ~PQ~F~~i~~~D~y~~~~~~ffd~~~~g~dglqGP~YvGTGC~fRR~ALyG~~p~~~~~~~~~~~~ 558 (977)
T PLN02195 479 LMDPVVGRDVCYVQFPQRFDGIDRSDRYANRNVVFFDVNMKGLDGIQGPVYVGTGCVFNRQALYGYGPPSLPRLPKSSSS 558 (977)
T ss_pred ccCcccCCeeEEEcCCcccCCCCCCCCCCcccceeeeeeeccccccCCccccccCceeeehhhhccCccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998876444444444
Q ss_pred CCCCcccccccccccccccCC----CccCCcchhhhhhhhhhhhhccccccccCchhHHHhhhcCCchHHHHHHhHhhCC
Q 001382 673 CLPKWCCCCCRSRKKSKKGKS----NKKNKDTSKQIYALENIEEGIEDNEKSSLMPQIKFEKKFGQSPVFIASTLKEAGG 748 (1089)
Q Consensus 673 ~~~~~~~~c~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG 748 (1089)
+| | |||+.+++..++++ +.++.+.+.++..++++++ .++.+++.++++++++++||+|++|++|++.+.+|
T Consensus 559 ~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~fG~S~~fi~S~~~~~~~ 633 (977)
T PLN02195 559 SS---S-CCCPTKKKPEQDPSEIYRDAKREDLNAAIFNLREIDN-YDEYERSMLISQMSFEKTFGLSSVFIESTLMENGG 633 (977)
T ss_pred cc---c-ccccccccccccchhhccccccccccccccccccccc-cchhhhhhhhhhhHHHHhhcccHHHHHHHHHHhcC
Confidence 44 3 35554443221111 1122233344555555543 22346777889999999999999999999999999
Q ss_pred CCCCCChhhHHHHhHHhhcccccccCccccccCcccccccchHHHHHHHHhCCcEEEEecCCCCcccccCCCCHHHHHHh
Q 001382 749 VPTGASTASLLNEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQ 828 (1089)
Q Consensus 749 ~p~~~~~~~~~~ea~~v~sc~YE~~T~WG~evGW~ygSvTEDi~Tg~rLh~rGWrsvY~~p~~~Af~G~aP~tl~~~l~Q 828 (1089)
.+....++++++||++|+||+||++|+||+||||.|||+|||+.||++||++||||+|++|.+++|.|+||+|+.+++.|
T Consensus 634 ~~~~~~~~~~l~eA~~V~sC~YE~~T~WG~evGw~YGSvTEDv~TG~rlH~rGWrSvY~~p~r~af~G~AP~~L~~~L~Q 713 (977)
T PLN02195 634 VPESANPSTLIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWRSIYCMPVRPAFKGSAPINLSDRLHQ 713 (977)
T ss_pred CCCCCCcHHHHHHHHhhhcccCccccchhhhcCeeccceecHHHHHHHHHccCCcEEecCCccHHhcccCCCCHHHHHHH
Confidence 99888889999999999999999999999999999999999999999999999999999998889999999999999999
Q ss_pred hheecchhhHHHHhhccccccccC-CCCCcccchhhhhhhhhHhHHHHHHHHHHHHHHHHHhCCcccccchhHHHHHHHH
Q 001382 829 VLRWALGSVEILLSRHCPIWYGYG-CGLKPLERFSYINSVVYPITSIPLIAYCTLPAICLLTGKFIVPEISNYASILFMA 907 (1089)
Q Consensus 829 R~RWA~G~lQIl~sk~~Pl~~g~~-k~L~~~QRL~Yl~~~ly~l~sl~~liylllP~l~Ll~G~~ivp~~s~~~~i~fi~ 907 (1089)
|+|||+|++||++++++|+++|+. ++|+++|||+|+++++||++++++++|+++|++||++|++++|.++++++++|++
T Consensus 714 r~RWA~G~lqI~~sr~nPl~~g~~~~~L~~~QRL~Yl~~~ly~~~slp~liY~~lP~l~Ll~G~~i~P~vs~~~~~~f~~ 793 (977)
T PLN02195 714 VLRWALGSVEIFLSRHCPLWYGYGGGRLKWLQRLAYINTIVYPFTSLPLIAYCTLPAICLLTGKFIIPTLSNLASMLFLG 793 (977)
T ss_pred HHHHHhchhhhhhccCCccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeecccchHHHHHHHHH
Confidence 999999999999999999998763 7899999999999999999999999999999999999999999999888899999
Q ss_pred HHHHHHHHHHHHhhccCCcccccccchhhhhhhhhHHHHHHHHHHHHHHhcCCccceeeCCCCCCCCCcccceeeccccc
Q 001382 908 LFISIAATGILEMQWGGVGIHDWWRNEQFWVIGGASSHLFALIQGLLKVVGGVNTNFTVTSKAADDGEFSDLYLFKWTSL 987 (1089)
Q Consensus 908 lfls~~~~~lLe~~wsG~s~~~wWrne~~W~I~~~sa~l~Av~~aLlk~L~g~~~~F~VTpKg~~~~~~~~ly~f~ws~L 987 (1089)
+|+++++++++|++|+|+++++||||||||+|+++|+|+||++++++|+|++++++|.||+|..++++++++|+|+||++
T Consensus 794 lfl~~~~~~~lE~~~sG~si~~WWrnqq~w~I~~tSa~Lfavl~~llKvLggs~~~F~VTsK~~dd~~~~~~Y~f~~S~l 873 (977)
T PLN02195 794 LFISIILTSVLELRWSGVSIEDLWRNEQFWVIGGVSAHLFAVFQGFLKMLAGLDTNFTVTAKAADDTEFGELYMVKWTTL 873 (977)
T ss_pred HHHHHHHHHHHHHHhcccCHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHcCCCccceeccccccccchhcceeccceeh
Confidence 99999999999999999999999999999999999999999999999999999999999999988778889999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHhhe
Q 001382 988 LIPPLTLLVFNLIGVIIGVADAISNGYETWGPLFGKLFFSLWVILHLYPFLKGFLGKQDRLPTILLVWAILLASIFSLLW 1067 (1089)
Q Consensus 988 ~iP~~~Llilnliaiv~Gi~r~i~~~~~~wg~l~g~l~~~~Wvl~~l~Pfl~gL~gR~~~~P~~v~~~s~~la~~f~~l~ 1067 (1089)
++|+++++++|++|+++|++++++++++.|+++++++|+++|+++|+|||++|||||++|+|+||++||++||++|||||
T Consensus 874 ~iP~ttl~ilNlvaiv~g~~~~i~~~~~~~g~l~~~~~~~~wvv~~~~Pf~kgl~gR~~r~P~~v~v~s~ll~~~~~l~~ 953 (977)
T PLN02195 874 LIPPTSLLIINLVGVVAGFSDALNKGYEAWGPLFGKVFFAFWVILHLYPFLKGLMGRQNRTPTIVVLWSVLLASVFSLVW 953 (977)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCeeehHHHHHHHHHHHHHH
Confidence 99999999999999999999999988889999999999999999999999999999999999999999999999999999
Q ss_pred eEecCCCCC-CCcc-cccc-CCCC
Q 001382 1068 ARVNPFVSK-GDIV-LEVC-GLDC 1088 (1089)
Q Consensus 1068 v~~~~~~~~-~~~~-~~~~-~~~~ 1088 (1089)
|+||||+++ +||+ +++| |++|
T Consensus 954 v~~~~~~~~~~~~~~~~~~~~~~~ 977 (977)
T PLN02195 954 VKINPFVGKTDTTTLSNNCISIDC 977 (977)
T ss_pred eeccccccCCCCCchhhccCCCCC
Confidence 999999999 9999 9999 9999
No 7
>PLN02248 cellulose synthase-like protein
Probab=100.00 E-value=4.8e-251 Score=2234.90 Aligned_cols=951 Identities=50% Similarity=0.929 Sum_probs=825.7
Q ss_pred CCcccccccC---CceEEEeecccccccccccccCCccccc--cCccccccCCCCccccCCCCCCCcchhhHHHHHhhcC
Q 001382 4 NGRLVAGSHN---RNEFVLINADEVARVTSVKELSGQICQI--CGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGN 78 (1089)
Q Consensus 4 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~C~i--Cgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~ 78 (1089)
+++||||+|| |+|+|++..|++..|+++++.+++.|.+ |+.+++.+++|+...+| ||+|.|||+||-++.++|
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~- 166 (1135)
T PLN02248 89 SNSIFTGGFNSVTRAHLMDKVIESEVSHPQMAGAKGSSCAMPGCDGKVMRDERGEDLLPC-ECGFKICRDCYIDAVKSG- 166 (1135)
T ss_pred ccceecCCCCccchhhhhhcccccccCCcccCCCCCCcccccCcccccccccccccCCcc-cccchhHHhHhhhhhhcC-
Confidence 6789999999 9999999999999999999999999998 99999999999999999 999999999999999996
Q ss_pred CCCCCCccccccccCCCCCCCCCCCCCcccccccccCCCCCCchhhHHHhhhhccccCCCCCcccccccCCCcccccccc
Q 001382 79 QACPQCKTRYKRIKGSPRVDGDEEEDDTDDLENEFDINDRKDPHHIAEAMLSSRLNIGRGSQAYVSGITTPSEVDSVSVA 158 (1089)
Q Consensus 79 ~~CpqCkt~Ykr~kgsprv~gd~ee~~~dd~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (1089)
+.||+||++||.+ |+++++ +| ++ .+. .. ++. .. +.+.++. .|+.
T Consensus 167 ~~~~~~~~~~~~~--------~~~~~~-~~----~~--~~~--~~----~~~--~~-~~~~~~~------------~~~~ 210 (1135)
T PLN02248 167 GICPGCKEPYKVT--------DLDDEV-PD----ES--SGA--LP----LPP--PG-GSKMDRR------------LSLM 210 (1135)
T ss_pred CCCCCCccccccc--------cccccc-cc----cc--ccc--cc----CCC--CC-Ccccccc------------cccc
Confidence 7999999999865 332222 22 11 111 11 111 00 0000000 0000
Q ss_pred -CCCcccccCCCCCCCCCcCcccccCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCccccCcCccccchhhHHHHHhhh
Q 001382 159 -QEIPLLTYGNEDVGISSDKHALIIPPFMGRGKRIHPMSFPDGFMTLPPRPMDPKKDLAVYGYGTVAWKERMEEWKKKQN 237 (1089)
Q Consensus 159 -~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 237 (1089)
++-.+..+++|||| |+ ||++++| ++|||||+.|+++..
T Consensus 211 ~~~~~~~~~~~~~~~-----~~---------------------------~w~~~~~--~~~~~~~~~~~~~~~------- 249 (1135)
T PLN02248 211 KSNSLLMRSQTGDFD-----HN---------------------------RWLFETK--GTYGYGNAVWPKDDG------- 249 (1135)
T ss_pred cccchhccCCCCCCC-----Cc---------------------------eeeeecc--cccccccccCccccc-------
Confidence 10111224457877 65 9999999 999999999998642
Q ss_pred hhhhhcccCCCCCCCCCCCCCCCCCCCcCccCCCCCceeeeecCCCCcchhHHHHHHHHHHHHHhhhhhccccccchhhH
Q 001382 238 EKLQVVKHQGGNGGGNNDGDGVDDPDLPMMDEGRQPLSRKLPISSSKISPYRLIILLRLVILGLFFHYRILHPVNDAYGL 317 (1089)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~yR~~~~~~l~~l~~yl~wRi~~~~~~a~~l 317 (1089)
.|+++ + +.. ...+||++|+||+||+++++++++|||++++++|+++++||+||++|++.++.|+
T Consensus 250 --------~~~~~----~--~~~--~~~~~~~~~~pL~~~~~i~~~il~pyRl~~~~rlv~l~~fl~~Ri~~~~~~~~~~ 313 (1135)
T PLN02248 250 --------YGDDG----G--GGG--PGEFMDKPWRPLTRKVKISAAILSPYRLLILIRLVVLGLFLTWRVRNPNEDAMWL 313 (1135)
T ss_pred --------cCCCC----C--ccc--cccccccCCCCceeeeecCcccccHHHHHHHHHHHHHHHHHHHHhcCCCCcchHH
Confidence 12211 0 011 1146899999999999999999999999999999999999999999999899999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCcccccccchhhhHhhhhhccCC-----CCCCCCceeEEEecCCCCCCCHHHHHHHHHHH
Q 001382 318 WLTSVICEIWFAVSWILDQFPKWDPIVRETYLDRLSLRYEKEG-----KPSDLADIDIFVSTVDPMKEPPLITANTVLSI 392 (1089)
Q Consensus 318 wl~~~~~Ei~f~~~wiL~q~~kw~Pi~R~~~~drL~~r~~~~~-----~~~~lP~VDvfV~T~dP~kEPp~v~~nTvls~ 392 (1089)
|+++++||+||+|+|+|+|++||+||+|.||+|||++||+.|+ ++++||+|||||||+||+||||++|+||||||
T Consensus 314 W~~s~~cE~WFaf~Wll~q~~Kw~Pv~R~t~~~rL~~r~e~~~~~~p~g~s~LP~vDvFV~TADP~kEPPl~t~NTVLSi 393 (1135)
T PLN02248 314 WGMSVVCEIWFAFSWLLDQLPKLCPINRATDLAVLKEKFETPSPSNPTGRSDLPGIDVFVSTADPEKEPPLVTANTILSI 393 (1135)
T ss_pred HHHHHHHHHHHHHHHHHhccccccccccccCHHHHHHHhccccccCCCCcccCCcceeEeecCCCccCcchHHHHHHHHH
Confidence 9999999999999999999999999999999999999998654 36789999999999999999999999999999
Q ss_pred HcCCCCCCCcEEEEcCCCchhhhHHHHhhhHHHhhhhhhhhhhcCCCCCCchhhhhhccccccCCCCchhHHHHHHHHHH
Q 001382 393 LAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRAPEWYFAQKLDYLKDKVNPSFIRERRAMKRE 472 (1089)
Q Consensus 393 la~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFCkk~~Iepr~Pe~YFs~~~d~~~~~~~~~f~~err~~kre 472 (1089)
||+|||+|||+|||||||+|+||||||.|||+|||+||||||||+|||||||+||++|.|+++++.+|+|++|||+||||
T Consensus 394 LA~DYP~eKLacYvSDDGgS~LTf~AL~EAa~FA~~WVPFCrKh~IepRaPe~YFs~~~~~~~~~~~~~F~~d~r~~Kre 473 (1135)
T PLN02248 394 LAADYPVEKLACYLSDDGGALLTFEAMAEAASFARIWVPFCRKHDIEPRNPESYFSLKRDPTKNKVRPDFVKDRRRVKRE 473 (1135)
T ss_pred hcccccccceeEEEecCCchHHHHHHHHHHHHHHHhhcchhhhcCCCcCCHHHHhccCCCcccCccchhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh------------------------------hccCCcCccccCCCCCCCCCC--------CCCCcch
Q 001382 473 YEEFKVRINGLVAM------------------------------AQKVPEDGWTMQDGTPWPGNN--------VRDHPGM 514 (1089)
Q Consensus 473 Yee~k~rI~~l~~~------------------------------~~~~p~~~w~m~dg~~w~~~~--------~rdHp~i 514 (1089)
|||||+|||+|++. .+++|+++| |+|||+|||+| ++|||+|
T Consensus 474 Yee~K~RIe~l~~~~~~rs~~~n~~~e~~~~~~~~~~~~~~~~e~~~~~~~~w-m~dgt~wpg~W~~~~~~~~~~dH~~I 552 (1135)
T PLN02248 474 YDEFKVRINGLPDSIRRRSDAYNAREEIKAKKKQRESGGGDPSEPLKVPKATW-MADGTHWPGTWLSSAPDHSRGDHAGI 552 (1135)
T ss_pred HHHHHHHHHhhhhhccccccccchhHHHHhhhhhhhhccccccccccccccee-eccCCcCCCcccCcccCCCCCCCcce
Confidence 99999999999641 245788999 99999999984 4699999
Q ss_pred hhhhccCCC------------Cccc--cCCccCcEEEEeccCCCCCCCCCchhhhHHHHHhhccccCCCEEEEecCCCCC
Q 001382 515 IQVFLGQNG------------VRDI--EGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYI 580 (1089)
Q Consensus 515 iqv~l~~~g------------~~d~--~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSa~~tngp~Il~lDcD~~~ 580 (1089)
|||||++++ ..|. .+++||+|||||||||||++||+||||||+|+||||+|||||||||||||||+
T Consensus 553 IqVll~~p~~e~~~g~~~~~~~~d~~~~d~~lP~LVYVSREKRPg~~Hh~KAGAMNALlRVSavmTNgPfILNLDCDmYi 632 (1135)
T PLN02248 553 IQVMLKPPSDEPLMGSADDENLIDFTDVDIRLPMLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYI 632 (1135)
T ss_pred eEEeccCCCcccccCcccccccccccccccccceeEEEecccCCCCCcccccchhhhHHHhhhhccCCCeEEEeccCccc
Confidence 999998754 1122 24589999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHhhcCCCCCceEEEEecCccccCCCccccccchhhhhhhhhccccccCCCccccccccchhhhhhcCCCC
Q 001382 581 NNSKALREAMCFMMDPTSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDA 660 (1089)
Q Consensus 581 ~~p~~Lr~amcff~Dp~~g~~v~~VQ~PQ~F~nid~~D~y~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p 660 (1089)
|||++||+||||||||+ |+++|||||||+|+|+|++|||+||+++|||++|+|+||+|||+||||||+|||+||||++|
T Consensus 633 Nns~alr~AMCf~lD~~-g~~vAfVQFPQrF~~I~k~D~Ygn~~~Vffdi~~~GlDGlqGP~YvGTGCffRR~ALYG~~p 711 (1135)
T PLN02248 633 YNSLAIREGMCFMMDRG-GDRICYVQFPQRFEGIDPSDRYANHNTVFFDVNMRALDGLQGPVYVGTGCLFRRIALYGFDP 711 (1135)
T ss_pred CCchhHHhcchheecCC-CCceEEEcCCcccCCCCCCCccCCcceeeeeeeeccccccCCccccccCceeeehhhcCcCC
Confidence 99999999999999997 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcCCCCCCcccccccccccccccCCCccCCcchhhhhhhhhhhhhccccccccCchhHHHhhhcCCchHHHH
Q 001382 661 PVKKKPPRKTCNCLPKWCCCCCRSRKKSKKGKSNKKNKDTSKQIYALENIEEGIEDNEKSSLMPQIKFEKKFGQSPVFIA 740 (1089)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~ 740 (1089)
|..++.. .++++||+.++++++.+. ... . .++++++ +++ .+.+.++++||+|..|++
T Consensus 712 p~~~~~~--------~~~~~~~~~~~~~~~~~~---~~~--~---~~~~~~~---~~~----~~~~~~~~rfG~S~~fi~ 768 (1135)
T PLN02248 712 PRAKEHS--------GCFGSCKFTKKKKKETSA---SEP--E---EQPDLED---DDD----LELSLLPKRFGNSTMFAA 768 (1135)
T ss_pred ccccccc--------cccccccccccccccccc---ccc--c---ccccccc---cch----hhhhhhhhhhccchhhhh
Confidence 8754322 123445554433211100 000 0 0222211 111 245678899999999999
Q ss_pred HHhH-hhCCCCC-------------------CCChhhHHHHhHHhhcccccccCccccccCcccccccchHHHHHHHHhC
Q 001382 741 STLK-EAGGVPT-------------------GASTASLLNEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCH 800 (1089)
Q Consensus 741 S~l~-e~GG~p~-------------------~~~~~~~~~ea~~v~sc~YE~~T~WG~evGW~ygSvTEDi~Tg~rLh~r 800 (1089)
|+.. +..|.+. ...++++++||++|+||+||++|+||+||||.|+|+|||+.||++||++
T Consensus 769 S~~~a~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~eA~~V~sC~YE~~T~WG~evG~~YGSvTEDv~TGlrLH~r 848 (1135)
T PLN02248 769 SIPVAEFQGRPLADHPSVKNGRPPGALTVPREPLDAATVAEAISVISCWYEDKTEWGDRVGWIYGSVTEDVVTGYRMHNR 848 (1135)
T ss_pred hhHHHhhcccccccccccccccccccccccccCCcHHHHHHHHhhcccccccCCchhhhcCeeecceechHHHHHHHHhc
Confidence 9853 3232221 1235689999999999999999999999999999999999999999999
Q ss_pred CcEEEEecCCCCcccccCCCCHHHHHHhhheecchhhHHHHhhccccccccCCCCCcccchhhhhhhhhHhHHHHHHHHH
Q 001382 801 GWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEILLSRHCPIWYGYGCGLKPLERFSYINSVVYPITSIPLIAYC 880 (1089)
Q Consensus 801 GWrsvY~~p~~~Af~G~aP~tl~~~l~QR~RWA~G~lQIl~sk~~Pl~~g~~k~L~~~QRL~Yl~~~ly~l~sl~~liyl 880 (1089)
||||+||+|++.+|.|+||+|+.++++||+|||+|++||++++++|+++ .++|+++|||+|+++++||++++++++|+
T Consensus 849 GWrSvY~~p~r~AF~GlAP~~L~d~L~Qr~RWA~G~lQIf~sr~~Pll~--~~~Lsl~QRL~Yl~~~lypf~Slp~liY~ 926 (1135)
T PLN02248 849 GWRSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALLA--SRRLKFLQRIAYLNVGIYPFTSIFLIVYC 926 (1135)
T ss_pred CCceEeCCCChHhhcCCCCCCHHHHHHHHHHHhhchHHHHhccCCcccc--CCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999985 47899999999999999999999999999
Q ss_pred HHHHHHHHhCCcccccchhHHHHHHHHHHHHHHHHHHHHhhccCCcccccccchhhhhhhhhHHHHHHHHHHHHHHhcCC
Q 001382 881 TLPAICLLTGKFIVPEISNYASILFMALFISIAATGILEMQWGGVGIHDWWRNEQFWVIGGASSHLFALIQGLLKVVGGV 960 (1089)
Q Consensus 881 llP~l~Ll~G~~ivp~~s~~~~i~fi~lfls~~~~~lLe~~wsG~s~~~wWrne~~W~I~~~sa~l~Av~~aLlk~L~g~ 960 (1089)
++|++||++|++++|+.+..++++++.+++++++++++|++|+|+++++||||||||+|.++++|++|++++++|+|+++
T Consensus 927 llP~l~LLtGi~~~p~~~~~fl~yll~l~l~~~~~sllE~~wsGvsl~~WWrnQq~W~I~~tSA~L~A~l~aiLKvLggs 1006 (1135)
T PLN02248 927 FLPALSLFSGQFIVQTLNVTFLVYLLIITITLCLLAVLEIKWSGITLEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGI 1006 (1135)
T ss_pred HHHHHHHHcCCcccccccHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHhhhhheeeehhhHHHHHHHHHHHHHHhcCc
Confidence 99999999999999987655555555667888999999999999999999999999999999999999999999999999
Q ss_pred ccceeeCCCCCCCC---CcccceeeccccchHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHH
Q 001382 961 NTNFTVTSKAADDG---EFSDLYLFKWTSLLIPPLTLLVFNLIGVIIGVADAISNGYETWGPLFGKLFFSLWVILHLYPF 1037 (1089)
Q Consensus 961 ~~~F~VTpKg~~~~---~~~~ly~f~ws~L~iP~~~Llilnliaiv~Gi~r~i~~~~~~wg~l~g~l~~~~Wvl~~l~Pf 1037 (1089)
+++|+||+|+.+++ +++++|+|+|+++++|+++++++|++|+++|++|++.+.++.|+.+++++|+++|+++|+|||
T Consensus 1007 ~~~F~VTsK~~~~d~~~~~a~ly~f~wS~L~iP~ttl~llNLvAivvGv~R~i~g~~~~~~~l~g~l~~s~Wvv~~lyPf 1086 (1135)
T PLN02248 1007 EISFTLTSKSAGDDEDDEFADLYIVKWTSLMIPPITIMMVNLIAIAVGVSRTIYSEIPQWSKLLGGVFFSFWVLAHLYPF 1086 (1135)
T ss_pred cccceeCCcccccccccccchheecCcchHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHHHHHH
Confidence 99999999987643 467899999999999999999999999999999999877778999999999999999999999
Q ss_pred HHHhhcCCCCcchhHHHHHHHHHHHHHhheeEecCCCCC
Q 001382 1038 LKGFLGKQDRLPTILLVWAILLASIFSLLWARVNPFVSK 1076 (1089)
Q Consensus 1038 l~gL~gR~~~~P~~v~~~s~~la~~f~~l~v~~~~~~~~ 1076 (1089)
+||||||++|+||||+|||++|++++|||||+|+||+..
T Consensus 1087 ~kGL~gR~gr~P~iv~v~s~ll~~~~sll~v~~~~~~~~ 1125 (1135)
T PLN02248 1087 AKGLMGRRGRTPTIVYVWSGLLSITISLLWVAISPPSGA 1125 (1135)
T ss_pred HHHHhccCCCCCeehHHHHHHHHHHHHHHheEeccccCc
Confidence 999999999999999999999999999999999999954
No 8
>PF03552 Cellulose_synt: Cellulose synthase; InterPro: IPR005150 Cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues, is the major component of wood and thus paper, and is synthesized by plants, most algae, some bacteria and fungi, and even some animals. The genes that synthesize cellulose in higher plants differ greatly from the well-characterised genes found in Acetobacter and Agrobacterium spp. More correctly designated as "cellulose synthase catalytic subunits", plant cellulose synthase (CesA) proteins are integral membrane proteins, approximately 1,000 amino acids in length. There are a number of highly conserved residues, including several motifs shown to be necessary for processive glycosyltransferase activity [].; GO: 0016760 cellulose synthase (UDP-forming) activity, 0030244 cellulose biosynthetic process, 0016020 membrane
Probab=100.00 E-value=5.8e-218 Score=1902.61 Aligned_cols=710 Identities=68% Similarity=1.263 Sum_probs=678.5
Q ss_pred eeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCchhhhHHHHhhhHHHhhhhhhhhhhcCCCCCCchhhh
Q 001382 368 IDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRAPEWYF 447 (1089)
Q Consensus 368 VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFCkk~~Iepr~Pe~YF 447 (1089)
|||||||+||.||||++|+|||||+||+|||+|||+|||||||+|+||||||.|||+|||+||||||||+|||||||+||
T Consensus 1 vDvFv~TaDP~~EPp~~~~nTvLS~lA~dYP~~kls~YvSDDg~s~ltf~al~Ea~~FA~~WvPFCkk~~ie~R~P~~YF 80 (720)
T PF03552_consen 1 VDVFVCTADPEKEPPLVTANTVLSILAYDYPVEKLSCYVSDDGGSMLTFYALMEAAKFAKHWVPFCKKYNIEPRAPEAYF 80 (720)
T ss_pred CceEEecCCCCcCCCeeeHHHHHHHHhhcCCccceeEEEecCCchHHHHHHHHHHHHHHhhhcchhhccCCccCCHHHHh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCCcCccccCCCCCCCCCCCCCCcchhhhhccCCCCccc
Q 001382 448 AQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVRDI 527 (1089)
Q Consensus 448 s~~~d~~~~~~~~~f~~err~~kreYee~k~rI~~l~~~~~~~p~~~w~m~dg~~w~~~~~rdHp~iiqv~l~~~g~~d~ 527 (1089)
+++.|+++++.+|+|++||++|||||||||+|||+++++.+++|+++|+|+||++|||++++|||+||||+++++++.|.
T Consensus 81 ~~~~~~~~~~~~~~f~~e~~~~k~~ye~~k~ri~~~~~~~~~~~~~~~~~~~~~~w~~~~~~dH~~iiqv~~~~~~~~~~ 160 (720)
T PF03552_consen 81 SSKIDPLKDKVQPEFVKERRAMKREYEEFKVRIEALVAKIQKVPEEGWTMQDGTPWPGNTRRDHPGIIQVLLDNPGGKDV 160 (720)
T ss_pred ccCCCcccCCcChhHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccceeccCCCcCCCCCCcCChhheEeeccCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccCcEEEEeccCCCCCCCCCchhhhHHHHHhhccccCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCceEEEEec
Q 001382 528 EGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQF 607 (1089)
Q Consensus 528 ~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSa~~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~v~~VQ~ 607 (1089)
+|++||+||||||||||+++||+||||||+|+||||+|||||||||||||||+|||+++|+||||||||+.|+++|||||
T Consensus 161 ~g~~lP~lvYvsREKrp~~~Hh~KAGAmNaL~RvSa~~tN~p~iLnlDcD~y~nn~~~~~~amc~~~d~~~g~~~~~vQf 240 (720)
T PF03552_consen 161 DGNELPMLVYVSREKRPGYPHHFKAGAMNALLRVSAVMTNAPFILNLDCDMYINNSQALREAMCFFMDPKIGKKIAFVQF 240 (720)
T ss_pred ccCcCCeEEEEeccCCCCCCchhhhcccccccccceeecCCCEEEEecccccccchHHHHHHHHhhccCCCCCeeEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCccccccchhhhhhhhhccccccCCCccccccccchhhhhhcCCCCCCCCCCCCCcCCCCCCccccccccccc
Q 001382 608 PQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKPPRKTCNCLPKWCCCCCRSRKK 687 (1089)
Q Consensus 608 PQ~F~nid~~D~y~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~c~~~~~~ 687 (1089)
||+|+|+|++|+|+|++++||+++|+|+||+|||+||||||+|||+||||++|+...+.++.++ +|++||++++|
T Consensus 241 pq~f~~i~~~d~y~~~~~~~~~~~~~g~dG~~gp~y~Gtgc~~rR~al~g~~~~~~~~~~~~~~-----~~~~~c~~~~k 315 (720)
T PF03552_consen 241 PQRFDGIDKNDRYGNQNRVFFDINMRGLDGLQGPFYVGTGCFFRREALYGFDPPRYEKDPEKTC-----CCCSCCFGRRK 315 (720)
T ss_pred CceeCCCCcCCCCCccceeeeeccccccccCCCceeeecCcceechhhhCCCCCchhcccCcce-----eeeecccCCcc
Confidence 9999999999999999999999999999999999999999999999999999998776555443 23444444444
Q ss_pred ccccCCC-----ccCCcchhhhhhhhhhhhhcc--ccccccCchhHHHhhhcCCchHHHHHHhHhhCCCCCCCChhhHHH
Q 001382 688 SKKGKSN-----KKNKDTSKQIYALENIEEGIE--DNEKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGASTASLLN 760 (1089)
Q Consensus 688 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~~~ 760 (1089)
+++++++ .++.+++.+.++++|++|+.+ +++++..+++++|+++||+|++|++|+..+.|+.+...+++++|+
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~FG~S~~fi~S~~~~~~~~~~~~~~~~~L~ 395 (720)
T PF03552_consen 316 KKKSKKKPKKRASKRRESSSPIFALEDIEEGAEGSDEERSSLMSQKELEKKFGQSPEFIASTLMAQGGVPRSPSPASLLE 395 (720)
T ss_pred cccccccchhccccccccccccccccccccccccchhhhhhcchhHHHHHHhcCCHHHHHHHHHHhcCCCCCCChHHHHH
Confidence 3332221 145677889999999999866 567888999999999999999999999999999999999999999
Q ss_pred HhHHhhcccccccCccccccCcccccccchHHHHHHHHhCCcEEEEecCCCCcccccCCCCHHHHHHhhheecchhhHHH
Q 001382 761 EAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEIL 840 (1089)
Q Consensus 761 ea~~v~sc~YE~~T~WG~evGW~ygSvTEDi~Tg~rLh~rGWrsvY~~p~~~Af~G~aP~tl~~~l~QR~RWA~G~lQIl 840 (1089)
||+||+||+||++|+||+||||.|||+|||+.||++||++||||+||+|+++||.|.||+|+.+.+.|++|||.|++||+
T Consensus 396 EA~~V~sC~YE~~T~WGkevGwiYGSvtEDv~TG~rmH~rGWrSvYc~p~r~AF~G~AP~nL~d~L~Q~~RWA~GslEI~ 475 (720)
T PF03552_consen 396 EAIHVASCGYEDKTEWGKEVGWIYGSVTEDVLTGFRMHCRGWRSVYCNPKRPAFLGSAPINLSDRLHQVKRWATGSLEIF 475 (720)
T ss_pred HHHHHhcCCccccCCcccccceEEEecccccccceeEeeCceeeEEeccccchhcccCCCChhhhceeeeeEeeeeEeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccccccccCCCCCcccchhhhhhhhhHhHHHHHHHHHHHHHHHHHhCCcccccchhHHHHHHHHHHHHHHHHHHHHh
Q 001382 841 LSRHCPIWYGYGCGLKPLERFSYINSVVYPITSIPLIAYCTLPAICLLTGKFIVPEISNYASILFMALFISIAATGILEM 920 (1089)
Q Consensus 841 ~sk~~Pl~~g~~k~L~~~QRL~Yl~~~ly~l~sl~~liylllP~l~Ll~G~~ivp~~s~~~~i~fi~lfls~~~~~lLe~ 920 (1089)
++|+||+|+|+.++|+++|||+|++.++|+++|+|+++|+++|++||++|++++|++++.++++|+++|+++++++++|+
T Consensus 476 fSr~~Pl~~g~~~rL~~lQrLaY~~~~~ypl~Sipll~Y~~lPalcLLtG~~i~Pk~s~~~~~~f~~lf~~~~~~~llE~ 555 (720)
T PF03552_consen 476 FSRHCPLWYGYGGRLKFLQRLAYLNYMLYPLTSIPLLCYCFLPALCLLTGIFIFPKVSSPWFIYFLALFVSIYAYSLLEF 555 (720)
T ss_pred hhcCCchhccCCCCCcHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHhhCCCcccCccccchhHHHHHHHHHHHHHHHHHH
Confidence 99999999987789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCcccccccchhhhhhhhhHHHHHHHHHHHHHHhcCCccceeeCCCCCC--CCCcccceeeccccchHHHHHHHHHH
Q 001382 921 QWGGVGIHDWWRNEQFWVIGGASSHLFALIQGLLKVVGGVNTNFTVTSKAAD--DGEFSDLYLFKWTSLLIPPLTLLVFN 998 (1089)
Q Consensus 921 ~wsG~s~~~wWrne~~W~I~~~sa~l~Av~~aLlk~L~g~~~~F~VTpKg~~--~~~~~~ly~f~ws~L~iP~~~Lliln 998 (1089)
+|+|+++++||||||||+|.++++|++|++++++|+|++++++|+||+|..+ ++++.++|+|+|+++++|+++|+++|
T Consensus 556 ~wsG~si~~WWrnQq~W~I~~tSa~LfAvl~~iLK~lg~s~t~F~VTsK~~dde~~~~~ely~f~wS~LfiP~tTllilN 635 (720)
T PF03552_consen 556 RWSGVSIREWWRNQQFWMIGGTSAHLFAVLQGILKVLGGSETSFTVTSKVSDDEDDKYAELYIFKWSPLFIPPTTLLILN 635 (720)
T ss_pred HhccCcHHHhhcccceeeehhhHHHHHHHHHHHHHHHcCCccceeecccccccccccccccccccccchhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999876 45567899999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHhheeEecCCCCC-C
Q 001382 999 LIGVIIGVADAISNGYETWGPLFGKLFFSLWVILHLYPFLKGFLGKQDRLPTILLVWAILLASIFSLLWARVNPFVSK-G 1077 (1089)
Q Consensus 999 liaiv~Gi~r~i~~~~~~wg~l~g~l~~~~Wvl~~l~Pfl~gL~gR~~~~P~~v~~~s~~la~~f~~l~v~~~~~~~~-~ 1077 (1089)
++|+++|+++++++++++|+++++++|+++|+++|+|||++|||||++|+||||++||++||++|+||||+||||++| +
T Consensus 636 Lva~v~Gi~r~i~~g~~~~g~l~g~lf~~~wVvv~lyPf~kGL~~R~~r~P~~v~v~S~lla~i~~llwv~i~~~~~~~~ 715 (720)
T PF03552_consen 636 LVAFVVGISRAINSGYGSWGPLLGQLFFSFWVVVHLYPFLKGLFGRKDRIPTSVIVWSVLLASIFSLLWVRIDPFLAKTT 715 (720)
T ss_pred HHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHhhHHHHhhhcccCCcceeehHHHHHHHHHHHHHheecccCcCCCC
Confidence 999999999999988889999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred Ccccc
Q 001382 1078 DIVLE 1082 (1089)
Q Consensus 1078 ~~~~~ 1082 (1089)
||+++
T Consensus 716 ~~~~~ 720 (720)
T PF03552_consen 716 GPDLK 720 (720)
T ss_pred CCCCC
Confidence 99875
No 9
>PLN02190 cellulose synthase-like protein
Probab=100.00 E-value=1.8e-201 Score=1765.86 Aligned_cols=725 Identities=34% Similarity=0.609 Sum_probs=657.2
Q ss_pred CCCCceeeeecCCCCcchhHHHHHHHHHHHHHhhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhcCcccccccchhh
Q 001382 270 GRQPLSRKLPISSSKISPYRLIILLRLVILGLFFHYRILHPVNDAYGLWLTSVICEIWFAVSWILDQFPKWDPIVRETYL 349 (1089)
Q Consensus 270 ~~~pl~~~~~~~~~~~~~yR~~~~~~l~~l~~yl~wRi~~~~~~a~~lwl~~~~~Ei~f~~~wiL~q~~kw~Pi~R~~~~ 349 (1089)
+.+||++++++++++ ||++.+++++++++||+||++++++++ ++|+++++||+||+|+|+|+|++||+|++|.|++
T Consensus 7 ~~~pL~~~~~~~~~~---~r~~~~~vl~~~~~~l~~R~~~~~~~~-~~W~~~~~~E~wf~~~WlL~q~~kw~pv~r~~~p 82 (756)
T PLN02190 7 SLPPLCERISHKSYF---LRAVDLTILGLLFSLLLYRILHMSEND-TVWLVAFLCESCFSFVWLLITCIKWSPAEYKPYP 82 (756)
T ss_pred CCCCceeeeeccchh---HHHHHHHHHHHHHHHHHHHHhCCCccc-HHHHHHHHHHHHHHHHHHHhccceeeecCCCCCc
Confidence 457999999999985 999999999999999999999999887 6899999999999999999999999999999999
Q ss_pred hHhhhhhccCCCCCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCchhhhHHHHhhhHHHhhhh
Q 001382 350 DRLSLRYEKEGKPSDLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKW 429 (1089)
Q Consensus 350 drL~~r~~~~~~~~~lP~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~W 429 (1089)
|||++|++ +||+||||||||||.||||++|+|||||+||+|||+|||+|||||||+|+||||||.|||+|||+|
T Consensus 83 ~~l~~r~~------~Lp~VDvFV~TaDP~kEPpl~v~nTvLSilA~dYP~eklscYvSDDG~s~LT~~al~EAa~FA~~W 156 (756)
T PLN02190 83 DRLDERVH------DLPSVDMFVPTADPVREPPIIVVNTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLKEASKFAKIW 156 (756)
T ss_pred HHHHHhhc------cCCcceEEEecCCCCcCCHHHHHHHHHHHHhccCCccccceEEecCCCcHhHHHHHHHHHHHHhhh
Confidence 99999983 699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcCCCCCCchhhhhhccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCCcCccccCCC--CCCCCCC
Q 001382 430 VPFCKKFKIEPRAPEWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDG--TPWPGNN 507 (1089)
Q Consensus 430 vPFCkk~~Iepr~Pe~YFs~~~d~~~~~~~~~f~~err~~kreYee~k~rI~~l~~~~~~~p~~~w~m~dg--~~w~~~~ 507 (1089)
|||||||+|||||||+||+++.+ ++..++|++|||+|||||||||+||++.+ +...|.+.|+ .+|++++
T Consensus 157 vPFCrK~~IepRaPe~YF~~~~~---~~~~~~f~~e~~~~K~eYee~k~ri~~a~------~~~~~~~~~~~~~~~~~~~ 227 (756)
T PLN02190 157 VPFCKKYNVRVRAPFRYFLNPPV---ATEDSEFSKDWEMTKREYEKLSRKVEDAT------GDSHWLDAEDDFEAFSNTK 227 (756)
T ss_pred cccccccCCCcCCHHHHhcCCCC---CCCCchhHHHHHHHHHHHHHHHHHHHhhc------cCCCCcccCCcccccCCCC
Confidence 99999999999999999998643 33458999999999999999999999864 3466766655 7899989
Q ss_pred CCCCcchhhhhccCCCCccccCCccCcEEEEeccCCCCCCCCCchhhhHHHHHhhccccCCCEEEEecCCCCCCchHHHH
Q 001382 508 VRDHPGMIQVFLGQNGVRDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALR 587 (1089)
Q Consensus 508 ~rdHp~iiqv~l~~~g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSa~~tngp~Il~lDcD~~~~~p~~Lr 587 (1089)
++|||+||||+++++|+ +.+|++||+|||||||||||++||+||||||+|+||||+|||||||||||||||+|||+++|
T Consensus 228 ~~dH~~iiqVll~~~~~-~~~~~~lP~LVYvSREKrP~~~Hh~KAGAmNaLlRVSavmtNaP~iLnlDCDmY~Nns~~~r 306 (756)
T PLN02190 228 PNDHSTIVKVVWENKGG-VGDEKEVPHLVYISREKRPNYLHHYKAGAMNFLVRVSGLMTNAPYMLNVDCDMYANEADVVR 306 (756)
T ss_pred CCCCccceEEEecCCCC-ccccccCceEEEEeccCCCCCCcccccchhHHHHHHhhhhccCCeEEEecCccccCchhHHH
Confidence 99999999999999775 44789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCC-ceEEEEecCccccCCCccccccchhhhhhhhhccccccCCCccccccccchhhhhhcCCCCCCCCCC
Q 001382 588 EAMCFMMDPTSG-KKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKP 666 (1089)
Q Consensus 588 ~amcff~Dp~~g-~~v~~VQ~PQ~F~nid~~D~y~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~ 666 (1089)
+||||||||+.+ +++|||||||+|+ |+|+|++++|||++|+|+||+|||+|+||||+|||+||||++||..++.
T Consensus 307 ~AmCf~ld~~~~~~~~~fVQfPQ~F~-----D~y~n~~~v~f~~~~~GldGlqGP~YvGTGCffrR~alyG~~p~~~~~~ 381 (756)
T PLN02190 307 QAMCIFLQKSKNSNHCAFVQFPQEFY-----DSNTNELTVLQSYLGRGIAGIQGPIYIGSGCFHTRRVMYGLSSDDLEDD 381 (756)
T ss_pred HhhhhhcCCCCCCCeeEEEeCchhhc-----cccCccceEEEEEeeccccccCCcccccCCcceEeeeecCCCccccccc
Confidence 999999999744 5899999999998 7899999999999999999999999999999999999999988653221
Q ss_pred CCCcCCCCCCcccccccccccccccCCCccCCcchhhhhhhhhhhhhccccccccCchhHHHhhhcCCchHHHHHHhHhh
Q 001382 667 PRKTCNCLPKWCCCCCRSRKKSKKGKSNKKNKDTSKQIYALENIEEGIEDNEKSSLMPQIKFEKKFGQSPVFIASTLKEA 746 (1089)
Q Consensus 667 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~ 746 (1089)
... .. ..+++ ..++.+++++||+|+.|++|++.+.
T Consensus 382 ~~~------------~~--------------------------------~~~~~-~~~~~~~~~~fg~s~~f~~s~~~~~ 416 (756)
T PLN02190 382 GSL------------SS--------------------------------VATRE-FLAEDSLAREFGNSKEMVKSVVDAL 416 (756)
T ss_pred ccc------------cc--------------------------------ccccc-ccchhhhhhhcCCcHHHHHHHHHHh
Confidence 000 00 00011 2345677899999999999998766
Q ss_pred CCCCC-CCChhhHHHHhHHhhcccccccCccccccCcccccccchHHHHHHHHhCCcEEEEecCCCCcccccCCCCHHHH
Q 001382 747 GGVPT-GASTASLLNEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDR 825 (1089)
Q Consensus 747 GG~p~-~~~~~~~~~ea~~v~sc~YE~~T~WG~evGW~ygSvTEDi~Tg~rLh~rGWrsvY~~p~~~Af~G~aP~tl~~~ 825 (1089)
.+.+. ..+.+++++||++|+||+||++|+||+||||.|+|+|||+.||++||++||||+||+|+++||.|++|+++.++
T Consensus 417 ~~~~~~~~~~~~~~~eA~~V~sC~YE~~T~WG~evG~~ygSitED~~TGl~mh~rGWrSvY~~p~~~AFlG~aP~~l~~~ 496 (756)
T PLN02190 417 QRKPNPQNSLTNSIEAAQEVGHCHYEYQTSWGNTIGWLYDSVAEDLNTSIGIHSRGWTSSYISPDPPAFLGSMPPGGPEA 496 (756)
T ss_pred ccCCCCccchHHHHHHHHhhcccCCCCCCchhhccCcccceeechHHHHHHHHccCCceEecCCCchhhcCcCCCChHHH
Confidence 44332 23457899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhheecchhhHHHHhhccccccccCCCCCcccchhhhhhhhhHhHHHHHHHHHHHHHHHHHhCCcccccchhHHHHHH
Q 001382 826 LHQVLRWALGSVEILLSRHCPIWYGYGCGLKPLERFSYINSVVYPITSIPLIAYCTLPAICLLTGKFIVPEISNYASILF 905 (1089)
Q Consensus 826 l~QR~RWA~G~lQIl~sk~~Pl~~g~~k~L~~~QRL~Yl~~~ly~l~sl~~liylllP~l~Ll~G~~ivp~~s~~~~i~f 905 (1089)
++||+|||+|++||+++++||++++..++|+++||++|++.++ |++++|+++|+++|++||++|++++|.. ++++++
T Consensus 497 L~Q~~RWa~G~lqI~fsr~nPl~~g~~~~L~l~QRLaYl~~~~-~~~sip~l~Y~~lP~l~Ll~g~~i~P~~--~~~~~~ 573 (756)
T PLN02190 497 MVQQRRWATGLIEVLFNKQSPLIGMFCRKIRFRQRLAYLYVFT-CLRSIPELIYCLLPAYCLLHNSALFPKG--VYLGII 573 (756)
T ss_pred hhhhhhHhhhhHHHHHhcCCCceeccCCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCccccCc--cHHHHH
Confidence 9999999999999999999999976568999999999999988 9999999999999999999999999975 466778
Q ss_pred HHHHHHHHHHHHHHhhccCCcccccccchhhhhhhhhHHHHHHHHHHHHHHhcCCccceeeCCCCCC-------------
Q 001382 906 MALFISIAATGILEMQWGGVGIHDWWRNEQFWVIGGASSHLFALIQGLLKVVGGVNTNFTVTSKAAD------------- 972 (1089)
Q Consensus 906 i~lfls~~~~~lLe~~wsG~s~~~wWrne~~W~I~~~sa~l~Av~~aLlk~L~g~~~~F~VTpKg~~------------- 972 (1089)
+++++++++++++|++|+|+++++||||||||+|.++|+|++|++++++|.|++++++|+||+|..+
T Consensus 574 ~~l~~~~~~~~l~E~~~sG~s~~~WWnnqr~w~I~~~sa~l~a~~~~~lK~lg~s~~~F~vTsK~~~~~~~~~~~~~~~~ 653 (756)
T PLN02190 574 VTLVGMHCLYTLWEFMSLGFSVQSWYVSQSFWRIKATSSWLFSIQDIILKLLGISKTVFIVTKKTMPETKSGSGSGPSQG 653 (756)
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHhhhheEEeecchHHHHHHHHHHHHHhccccceEEEeeccccccccccccccccc
Confidence 8889999999999999999999999999999999999999999999999999999999999999643
Q ss_pred C--CC--cccceeeccccchHHHHHHHHHHHHHHHHHHHHHHh---cCCccchhhHHHHHHHHHHHHHHHHHHHHhhcCC
Q 001382 973 D--GE--FSDLYLFKWTSLLIPPLTLLVFNLIGVIIGVADAIS---NGYETWGPLFGKLFFSLWVILHLYPFLKGFLGKQ 1045 (1089)
Q Consensus 973 ~--~~--~~~ly~f~ws~L~iP~~~Llilnliaiv~Gi~r~i~---~~~~~wg~l~g~l~~~~Wvl~~l~Pfl~gL~gR~ 1045 (1089)
+ ++ .+++|+|+||++++|+++++++|++|++.|+++++. ++.+.|+ .++++++++|+++|++||+||||+|+
T Consensus 654 ~~~~~~~~~~~f~f~~S~lfiP~tti~~~Nl~a~~~g~~~~~~~~~s~~~~~~-~l~q~~~~~~vv~~~~P~~~gl~~kd 732 (756)
T PLN02190 654 EDDGPNSDSGKFEFDGSLYFLPGTFIVLVNLAALAGFLVGLQRSSYSHGGGGS-GLAEACGCILVVMLFLPFLKGLFEKG 732 (756)
T ss_pred cccchhhhcceeEecceehHHHHHHHHHHHHHHHHHHHHHHhhhhhccCcccc-cHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 1 11 257899999999999999999999999988887653 2334454 45999999999999999999999665
Q ss_pred -CCcchhHHHHHHHHHHHHHhhee
Q 001382 1046 -DRLPTILLVWAILLASIFSLLWA 1068 (1089)
Q Consensus 1046 -~~~P~~v~~~s~~la~~f~~l~v 1068 (1089)
+|+|++|+++|++|+++|++++|
T Consensus 733 kg~iP~s~~~~s~~l~~~f~~~~~ 756 (756)
T PLN02190 733 KYGIPLSTLSKAAFLAVLFVVFSV 756 (756)
T ss_pred CCCCChhHHHHHHHHHHHHHhccC
Confidence 59999999999999999999876
No 10
>PLN02893 Cellulose synthase-like protein
Probab=100.00 E-value=1.3e-192 Score=1698.86 Aligned_cols=706 Identities=36% Similarity=0.691 Sum_probs=650.8
Q ss_pred CCCCCceeeeecCCCCcchhHHHHHHHHHHHHHhhhhhccccccch-hhHHHHHHHHHHHHHHHHHHhhcCcccccccch
Q 001382 269 EGRQPLSRKLPISSSKISPYRLIILLRLVILGLFFHYRILHPVNDA-YGLWLTSVICEIWFAVSWILDQFPKWDPIVRET 347 (1089)
Q Consensus 269 ~~~~pl~~~~~~~~~~~~~yR~~~~~~l~~l~~yl~wRi~~~~~~a-~~lwl~~~~~Ei~f~~~wiL~q~~kw~Pi~R~~ 347 (1089)
...+||+++++++++. +||+++++++++++++|+||+++.+.+. .|+|+++++||+||+|+|+|+|++||+|++|+|
T Consensus 9 ~~~~pL~~~~~~~~~~--~~R~~~~~~~~~i~~ll~~r~~~~~~~~~~~~w~~~~~~e~wf~f~W~l~q~~k~~Pv~r~~ 86 (734)
T PLN02893 9 TGAPPLHTCHPMRRTI--ANRVFAVVYSCAILALLYHHVIALLHSTTTLITLLLLLADIVLAFMWATTQAFRMCPVHRRV 86 (734)
T ss_pred CCCCCceeeeecCCch--HHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHccCcccccccccc
Confidence 4556999999999875 5999999999999999999999976654 789999999999999999999999999999999
Q ss_pred hhhHhhhhhccCCCCCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCchhhhHHHHhhhHHHhh
Q 001382 348 YLDRLSLRYEKEGKPSDLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFAR 427 (1089)
Q Consensus 348 ~~drL~~r~~~~~~~~~lP~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~ 427 (1089)
|+|||+++++ .++||+|||||||+||.||||++|+|||||+||+|||+|||+|||||||||+||||||.|||+|||
T Consensus 87 ~~~~L~~~~~----~~~lP~vDvfv~TaDP~~Epp~~~~ntvLSilA~dyp~~kls~YvSDDGgs~lt~~al~Eaa~FA~ 162 (734)
T PLN02893 87 FIEHLEHYAK----ESDYPGLDVFICTADPYKEPPMGVVNTALSVMAYDYPTEKLSVYVSDDGGSKLTLFAFMEAAKFAT 162 (734)
T ss_pred CHHHHhhhcc----cccCCcceeeeccCCcccCchHHHHHHHHHHHhhccCccceEEEEecCCccHHHHHHHHHHHHHHH
Confidence 9999997663 478999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhcCCCCCCchhhhhhccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCCcCccccCCC-----CC
Q 001382 428 KWVPFCKKFKIEPRAPEWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDG-----TP 502 (1089)
Q Consensus 428 ~WvPFCkk~~Iepr~Pe~YFs~~~d~~~~~~~~~f~~err~~kreYee~k~rI~~l~~~~~~~p~~~w~m~dg-----~~ 502 (1089)
+||||||||+|||||||+||+++. ++|++||++|||||||||+|||+++++ +++|++ |.|.++ +.
T Consensus 163 ~WvPFCrk~~ie~R~P~~YF~~~~--------~~~~~e~~~~k~~Yee~k~ri~~~~~~-~~~~~~-~~~~~~~~~~f~~ 232 (734)
T PLN02893 163 HWLPFCKKNKIVERCPEAYFSSNS--------HSWSPETEQIKMMYESMKVRVENVVER-GKVSTD-YITCDQEREAFSR 232 (734)
T ss_pred hhcccccccCCCcCCHHHHhccCC--------CccchHHHHHHHHHHHHHHHHHHHHhc-CcCchh-hhhhccccccccc
Confidence 999999999999999999999983 467899999999999999999999976 888877 655443 78
Q ss_pred CCCCC-CCCCcchhhhhccCCCCccccCCccCcEEEEeccCCCCCCCCCchhhhHHHHHhhccccCCCEEEEecCCCCCC
Q 001382 503 WPGNN-VRDHPGMIQVFLGQNGVRDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYIN 581 (1089)
Q Consensus 503 w~~~~-~rdHp~iiqv~l~~~g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSa~~tngp~Il~lDcD~~~~ 581 (1089)
|+++. ++|||+||||+++++++.|.+|++||+|||||||||||++||+||||||+++||||++||||||||||||||+|
T Consensus 233 w~~~~~~~dH~~ivqV~l~~~~~~d~~g~~lP~lvYvsReKrp~~~Hh~KAGaLN~llrvS~~~TngpfIl~lDcD~y~n 312 (734)
T PLN02893 233 WTDKFTRQDHPTVIQVLLESGKDKDITGHTMPNLIYVSREKSKNSPHHFKAGALNTLLRVSATMTNAPIILTLDCDMYSN 312 (734)
T ss_pred CcCCCCCCCCCceeeeeccCCCccchhhccCCceEEEeCCCCCCCCcccccchHHHHHHhhcccCCCCEEEEecCCcCCC
Confidence 98775 68999999999999988888999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHhhcCCCCCceEEEEecCccccCCCccccccchhhhhhhhhccccccCCCccccccccchhhhhhcCCCCC
Q 001382 582 NSKALREAMCFMMDPTSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAP 661 (1089)
Q Consensus 582 ~p~~Lr~amcff~Dp~~g~~v~~VQ~PQ~F~nid~~D~y~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~ 661 (1089)
||++|++|||||+||+.++++|||||||+|+|++++|+|+|++++||+++|+|+||+|||+||||||+|||+||||..+.
T Consensus 313 ~p~~l~~amcff~Dp~~~~~vafVQfPQ~F~~i~~~D~y~~~~~vff~~~~~glDG~~gp~y~GTGc~~RR~al~G~~~~ 392 (734)
T PLN02893 313 DPQTPLRALCYLLDPSMDPKLGYVQFPQIFHGINKNDIYAGELKRLFQINMIGMDGLAGPNYVGTGCFFRRRVFYGGPSS 392 (734)
T ss_pred chhHHHHHHHHhcCCCcCCceEEEeCcccccCCCcCCCCcchhHHHHHHHhhcccccCCceeeccceEEEHHHhcCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998431
Q ss_pred CCCCCCCCcCCCCCCcccccccccccccccCCCccCCcchhhhhhhhhhhhhccccccccCchhHHHhhhcCCchHHHHH
Q 001382 662 VKKKPPRKTCNCLPKWCCCCCRSRKKSKKGKSNKKNKDTSKQIYALENIEEGIEDNEKSSLMPQIKFEKKFGQSPVFIAS 741 (1089)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S 741 (1089)
.. .+++++ +++
T Consensus 393 ~~-------------------------------------------~~~~~~-------------------~~~------- 403 (734)
T PLN02893 393 LI-------------------------------------------LPEIPE-------------------LNP------- 403 (734)
T ss_pred cc-------------------------------------------chhhhh-------------------ccc-------
Confidence 00 000100 000
Q ss_pred HhHhhCCCCCCCChhhHHHHhHHhhcccccccCccccccCcccccccchHHHHHHHHhCCcEEEEecCCCCcccccCCCC
Q 001382 742 TLKEAGGVPTGASTASLLNEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPIN 821 (1089)
Q Consensus 742 ~l~e~GG~p~~~~~~~~~~ea~~v~sc~YE~~T~WG~evGW~ygSvTEDi~Tg~rLh~rGWrsvY~~p~~~Af~G~aP~t 821 (1089)
.++...+...++++++|++|+||.||++|+||+||||.|+|+|||+.||++||++||||+|++|++++|.|++|+|
T Consensus 404 ----~~~~~~~~~~~~~~~~a~~v~sC~ye~~t~WG~~~G~~ygsvtED~~Tg~~lh~~GWrSvY~~p~~~af~G~aP~~ 479 (734)
T PLN02893 404 ----DHLVDKSIKSQEVLALAHHVAGCNYENQTNWGSKMGFRYGSLVEDYYTGYRLQCEGWKSIFCNPKRPAFLGDSPIN 479 (734)
T ss_pred ----ccccccccchHHHHHHhhhccccccccCCccccccceEeccccccHHHHHHHHhcCCcEEecCCCchhhccCCCCC
Confidence 1112234456789999999999999999999999999999999999999999999999999999888999999999
Q ss_pred HHHHHHhhheecchhhHHHHhhccccccccCCCCCcccchhhhhhhhhHhHHHHHHHHHHHHHHHHHhCCcccccchhHH
Q 001382 822 LSDRLHQVLRWALGSVEILLSRHCPIWYGYGCGLKPLERFSYINSVVYPITSIPLIAYCTLPAICLLTGKFIVPEISNYA 901 (1089)
Q Consensus 822 l~~~l~QR~RWA~G~lQIl~sk~~Pl~~g~~k~L~~~QRL~Yl~~~ly~l~sl~~liylllP~l~Ll~G~~ivp~~s~~~ 901 (1089)
+.++++||+|||+|++||+++++||+++|. ++|+++||++|++.++||++++++++|+++|++||++|++++|+++.++
T Consensus 480 l~~~l~Q~~RWa~G~lqI~~s~~nPl~~g~-~~L~~~Qrl~Y~~~~~~~~~slp~liY~~~P~l~Ll~g~~i~p~~s~~~ 558 (734)
T PLN02893 480 LHDVLNQQKRWSVGLLEVAFSKYSPITFGV-KSIGLLMGLGYAHYAFWPIWSIPITIYAFLPQLALLNGVSIFPKASDPW 558 (734)
T ss_pred HHHHHHHHHHHHhhhHHHHhhccCchhhcc-cCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcccccccHHH
Confidence 999999999999999999999999999764 7899999999999999999999999999999999999999999998889
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCcccccccchhhhhhhhhHHHHHHHHHHHHHHhcCCccceeeCCCCCCCCC---c-c
Q 001382 902 SILFMALFISIAATGILEMQWGGVGIHDWWRNEQFWVIGGASSHLFALIQGLLKVVGGVNTNFTVTSKAADDGE---F-S 977 (1089)
Q Consensus 902 ~i~fi~lfls~~~~~lLe~~wsG~s~~~wWrne~~W~I~~~sa~l~Av~~aLlk~L~g~~~~F~VTpKg~~~~~---~-~ 977 (1089)
+++++++++++++++++|++|+|.++++|||+||+|+|.++++++++++++++|.|++++++|+||+|+.+++. + .
T Consensus 559 f~~yi~l~~s~~~~~~lE~~~sG~t~~~WWn~qr~w~I~~~ss~l~a~l~~iLk~lg~s~~~F~VT~K~~~~~~~~~y~~ 638 (734)
T PLN02893 559 FFLYIFLFLGAYGQDLLDFLLSGGTIQRWWNDQRMWMIRGLSSFLFGLVEFLLKTLGISTFGFNVTSKVVDEEQSKRYEQ 638 (734)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCccHhhhcchheeeehHHHHHHHHHHHHHHHHHhcccCCceeecCCCccccccccccc
Confidence 88899999999999999999999999999999999999999999999999999999999999999999876432 2 4
Q ss_pred cceeecc-ccchHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHHHhhcCCC--CcchhHHH
Q 001382 978 DLYLFKW-TSLLIPPLTLLVFNLIGVIIGVADAISNGYETWGPLFGKLFFSLWVILHLYPFLKGFLGKQD--RLPTILLV 1054 (1089)
Q Consensus 978 ~ly~f~w-s~L~iP~~~Llilnliaiv~Gi~r~i~~~~~~wg~l~g~l~~~~Wvl~~l~Pfl~gL~gR~~--~~P~~v~~ 1054 (1089)
|+|+|+| +++++|+++++++|++|+++|+++++.++ .|+.+++++++++|++++++||++||++|++ |+|++|++
T Consensus 639 ~~f~f~~~spl~ip~ttl~llNl~a~v~Gi~~~~~~~--~~~~~~~~~~~~~~~v~~~~P~~~gl~~r~dkg~~P~~v~~ 716 (734)
T PLN02893 639 GIFEFGVSSPMFLPLTTAAIINLVSFLWGIAQIFRQR--NLEGLFLQMFLAGFAVVNCWPIYEAMVLRTDDGKLPVKITL 716 (734)
T ss_pred ceeeecccchhHHHHHHHHHHHHHHHHHHHHHHHhCC--chhHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCccHHH
Confidence 8899995 89999999999999999999999998753 5788899999999999999999999999986 99999999
Q ss_pred HHHHHHHHHHhh
Q 001382 1055 WAILLASIFSLL 1066 (1089)
Q Consensus 1055 ~s~~la~~f~~l 1066 (1089)
||++||.++.++
T Consensus 717 ~s~~l~~~~~~~ 728 (734)
T PLN02893 717 ISIVLAWALYLA 728 (734)
T ss_pred HHHHHHHHHHHH
Confidence 999999887764
No 11
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=100.00 E-value=2.1e-66 Score=633.96 Aligned_cols=495 Identities=25% Similarity=0.390 Sum_probs=388.6
Q ss_pred HHH-HHHHHHHHHHhhhhhccccccch----hhHHHHHHHHHHHHHHHHHHhhcCcccccccchhhhHhhhhhccCCCCC
Q 001382 289 RLI-ILLRLVILGLFFHYRILHPVNDA----YGLWLTSVICEIWFAVSWILDQFPKWDPIVRETYLDRLSLRYEKEGKPS 363 (1089)
Q Consensus 289 R~~-~~~~l~~l~~yl~wRi~~~~~~a----~~lwl~~~~~Ei~f~~~wiL~q~~kw~Pi~R~~~~drL~~r~~~~~~~~ 363 (1089)
|++ +++.+++.++|++||++.+++.. ..+.++++++|+++.++.++..+..+.|.+|...+ .+.+++
T Consensus 57 ~~~~~~~~~~~~~~y~~wr~~~tl~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~r~~~~--------~~~~~~ 128 (713)
T TIGR03030 57 RLLLLVLSVFISLRYLWWRLTETLPFDNTLNFIFGTLLLLAELYSITILLLGYFQTVRPLDRTPVP--------LPLDPE 128 (713)
T ss_pred HHHHHHHHHHHHHHHHHhheeeecCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccC--------CCCCcc
Confidence 664 55666668999999999876543 34578899999999999888888888888775421 223457
Q ss_pred CCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCchhhhHHHHhhhHHHhhhhhhhhhhcCCCCCCc
Q 001382 364 DLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRAP 443 (1089)
Q Consensus 364 ~lP~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFCkk~~Iepr~P 443 (1089)
.+|+|||+||||| |++.++.+|+.+++++|||.+|+.|||+|||+++-|.....++
T Consensus 129 ~~P~VsViIP~yN---E~~~iv~~tl~s~~~~dYP~~~~eIiVvDDgStD~t~~~~~~~--------------------- 184 (713)
T TIGR03030 129 EWPTVDVFIPTYN---EDLEIVATTVLAAKNMDYPADKFRVWILDDGGTDQKRNDPDPE--------------------- 184 (713)
T ss_pred cCCeeEEEEcCCC---CCHHHHHHHHHHHHhCCCCccceEEEEEECcCCccccccchhh---------------------
Confidence 7999999999998 9999999999999999999999999999999887442211110
Q ss_pred hhhhhhccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCCcCccccCCCCCCCCCCCCCCcchhhhhccCCC
Q 001382 444 EWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNG 523 (1089)
Q Consensus 444 e~YFs~~~d~~~~~~~~~f~~err~~kreYee~k~rI~~l~~~~~~~p~~~w~m~dg~~w~~~~~rdHp~iiqv~l~~~g 523 (1089)
..+. ++..++ +++++++
T Consensus 185 -------------------~~~~---~~~~~~----~~~l~~~------------------------------------- 201 (713)
T TIGR03030 185 -------------------QAEA---AQRREE----LKEFCRK------------------------------------- 201 (713)
T ss_pred -------------------hhhh---hhhHHH----HHHHHHH-------------------------------------
Confidence 1110 000112 2223210
Q ss_pred CccccCCccCcEEEEeccCCCCCCCCCchhhhHHHHHhhccccCCCEEEEecCCCCCCchHHHHHHHHhh-cCCCCCceE
Q 001382 524 VRDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFM-MDPTSGKKI 602 (1089)
Q Consensus 524 ~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSa~~tngp~Il~lDcD~~~~~p~~Lr~amcff-~Dp~~g~~v 602 (1089)
.++.|+.|++ ++|+||||||++++. ++||||+++|||++ ++|++|++++++| .|| ++
T Consensus 202 ---------~~v~yi~r~~----n~~~KAgnLN~al~~----a~gd~Il~lDAD~v-~~pd~L~~~v~~f~~dp----~v 259 (713)
T TIGR03030 202 ---------LGVNYITRPR----NVHAKAGNINNALKH----TDGELILIFDADHV-PTRDFLQRTVGWFVEDP----KL 259 (713)
T ss_pred ---------cCcEEEECCC----CCCCChHHHHHHHHh----cCCCEEEEECCCCC-cChhHHHHHHHHHHhCC----CE
Confidence 1388999988 788999999999995 79999999999998 7999999999988 588 89
Q ss_pred EEEecCccccCCCcc-------ccccchhhhhhhhhccccccCCCccccccccchhhhhhcCCCCCCCCCCCCCcCCCCC
Q 001382 603 CYVQFPQRFDGIDRH-------DRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKPPRKTCNCLP 675 (1089)
Q Consensus 603 ~~VQ~PQ~F~nid~~-------D~y~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~ 675 (1089)
++||+||.|+|.++. +++.+++..||..+++|+|.+++++++||++++||+||
T Consensus 260 ~~Vqtp~~f~~p~~~~~nl~~~~~~~~e~~~f~~~i~~g~~~~~~~~~~Gs~~~iRR~al-------------------- 319 (713)
T TIGR03030 260 FLVQTPHFFVSPDPIERNLGTFRRMPNENELFYGLIQDGNDFWNAAFFCGSAAVLRREAL-------------------- 319 (713)
T ss_pred EEEeCCeeccCCCHHhhhhHHHHHhhhHHHHHHHHHHHHHhhhCCeeecCceeEEEHHHH--------------------
Confidence 999999999998753 34567788999999999999999999999999999987
Q ss_pred CcccccccccccccccCCCccCCcchhhhhhhhhhhhhccccccccCchhHHHhhhcCCchHHHHHHhHhhCCCCCCCCh
Q 001382 676 KWCCCCCRSRKKSKKGKSNKKNKDTSKQIYALENIEEGIEDNEKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGAST 755 (1089)
Q Consensus 676 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~ 755 (1089)
+++||+++
T Consensus 320 --------------------------------------------------------------------~~iGGf~~---- 327 (713)
T TIGR03030 320 --------------------------------------------------------------------DEIGGIAG---- 327 (713)
T ss_pred --------------------------------------------------------------------HHcCCCCC----
Confidence 35787654
Q ss_pred hhHHHHhHHhhcccccccCccccccCcccccccchHHHHHHHHhCCcEEEEecCCCCcccccCCCCHHHHHHhhheecch
Q 001382 756 ASLLNEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALG 835 (1089)
Q Consensus 756 ~~~~~ea~~v~sc~YE~~T~WG~evGW~ygSvTEDi~Tg~rLh~rGWrsvY~~p~~~Af~G~aP~tl~~~l~QR~RWA~G 835 (1089)
++++||++++++||++||+++|++. ..+ +|++|+|++++++||.||++|
T Consensus 328 -----------------------------~~vtED~~l~~rL~~~G~~~~y~~~-~~~-~g~~p~sl~~~~~Qr~RWa~G 376 (713)
T TIGR03030 328 -----------------------------ETVTEDAETALKLHRRGWNSAYLDR-PLI-AGLAPETLSGHIGQRIRWAQG 376 (713)
T ss_pred -----------------------------CCcCcHHHHHHHHHHcCCeEEEecc-ccc-cccCCCCHHHHHHHHHHHhcC
Confidence 6899999999999999999999954 444 899999999999999999999
Q ss_pred hhHHHHhhccccccccCCCCCcccchhhhhhhhhHhHHHHHHHHHHHHHHHHHhCCcccccchhHHHHHHHHHHHHHHHH
Q 001382 836 SVEILLSRHCPIWYGYGCGLKPLERFSYINSVVYPITSIPLIAYCTLPAICLLTGKFIVPEISNYASILFMALFISIAAT 915 (1089)
Q Consensus 836 ~lQIl~sk~~Pl~~g~~k~L~~~QRL~Yl~~~ly~l~sl~~liylllP~l~Ll~G~~ivp~~s~~~~i~fi~lfls~~~~ 915 (1089)
++|+++. .+|++ .+++++.||++|+++++||+.++++++|+++|++++++|+.+++.... .++..++++++.
T Consensus 377 ~~qi~~~-~~pl~---~~gl~~~qrl~y~~~~~~~~~~~~~~~~~~~P~~~l~~~~~~~~~~~~----~~~~~~lp~~~~ 448 (713)
T TIGR03030 377 MMQIFRL-DNPLL---KRGLSFPQRLCYLNAMLFWFFPLPRVIFLTAPLAYLFFGLNIFVASAL----EILAYALPHMLH 448 (713)
T ss_pred hHHHHhh-hCccc---cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceeCCHH----HHHHHHHHHHHH
Confidence 9999975 58987 689999999999999999999999999999999999999998886421 223344666666
Q ss_pred HHHHhhc-cCCcccccccchhhhhhhhhHHHHHHHHHHHHHHhcCCccceeeCCCCCCCCCcccceeeccccchHHHHHH
Q 001382 916 GILEMQW-GGVGIHDWWRNEQFWVIGGASSHLFALIQGLLKVVGGVNTNFTVTSKAADDGEFSDLYLFKWTSLLIPPLTL 994 (1089)
Q Consensus 916 ~lLe~~w-sG~s~~~wWrne~~W~I~~~sa~l~Av~~aLlk~L~g~~~~F~VTpKg~~~~~~~~ly~f~ws~L~iP~~~L 994 (1089)
+++.+.| .|.....||+ |.|..+ ...+.+...+...+++++.+|+||+|++..+.. .+ ++++.|++++
T Consensus 449 ~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~F~VT~Kg~~~~~~----~~--~~~~~p~~~l 517 (713)
T TIGR03030 449 SLLTNSYLFGRVRWPFWS-EVYETV----LAVYLLPPVLVTLLNPKKPKFNVTPKGELLDED----YF--SPLSRPYLIL 517 (713)
T ss_pred HHHHHHHHcCCeecchHH-HHHHHH----HHHHHHHHHHHHHhCcCCCCceecCCCcccccc----cc--chHHHHHHHH
Confidence 6666443 4555566784 554432 222334455566678899999999999753221 02 2589999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHHHhh---cCCC
Q 001382 995 LVFNLIGVIIGVADAISNGYETWGPLFGKLFFSLWVILHLYPFLKGFL---GKQD 1046 (1089)
Q Consensus 995 lilnliaiv~Gi~r~i~~~~~~wg~l~g~l~~~~Wvl~~l~Pfl~gL~---gR~~ 1046 (1089)
+++|++|+++|+++.+..+. ...+.+++++|.++|++-+..++. +|++
T Consensus 518 ~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~w~~~n~~~~~~~~~~~~~r~Q 568 (713)
T TIGR03030 518 FALILAGLAFGLYRIYGYPI----ERGVLLVVLGWNLLNLILLGAALAVVAERRQ 568 (713)
T ss_pred HHHHHHHHHHHHHHHhcCcc----ccchhhHHHHHHHHHHHHHHHHHHHHccCCC
Confidence 99999999999999864332 234567999999999998888773 5543
No 12
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=100.00 E-value=3.9e-66 Score=632.56 Aligned_cols=472 Identities=25% Similarity=0.403 Sum_probs=375.5
Q ss_pred HHHHHHHHHHHhhhhhccccccc----hhhHHHHHHHHHHHHHHHHHHhhcCcccccccchhhhHhhhhhccCCCCCCCC
Q 001382 291 IILLRLVILGLFFHYRILHPVND----AYGLWLTSVICEIWFAVSWILDQFPKWDPIVRETYLDRLSLRYEKEGKPSDLA 366 (1089)
Q Consensus 291 ~~~~~l~~l~~yl~wRi~~~~~~----a~~lwl~~~~~Ei~f~~~wiL~q~~kw~Pi~R~~~~drL~~r~~~~~~~~~lP 366 (1089)
++++.+++.++|++||++.+++. +..+.++++++|+++.++.++..+..+.|..|.+. +.+...+.+|
T Consensus 189 l~~l~~~~~~rY~~WR~~~tL~~~~~~~~~~~~~ll~ae~~~~~~~~lg~~~~~~~~~r~~~--------~~~~~~~~~P 260 (852)
T PRK11498 189 LIVLSLTVSCRYIWWRYTSTLNWDDPVSLVCGLILLFAETYAWIVLVLGYFQVVWPLNRQPV--------PLPKDMSLWP 260 (852)
T ss_pred HHHHHHHHHHHHHHHHHheeeCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCC--------CCCcccCCCC
Confidence 56677788999999999987653 34556789999999999989888888778877532 1222346789
Q ss_pred ceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCchhhhHHHHhhhHHHhhhhhhhhhhcCCCCCCchhh
Q 001382 367 DIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRAPEWY 446 (1089)
Q Consensus 367 ~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFCkk~~Iepr~Pe~Y 446 (1089)
.|||+||||| ||+.++.+|+.+++++|||.+|+.|||+|||+++-| .
T Consensus 261 ~VsViIPtYN---E~~~vv~~tI~a~l~~dYP~~k~EViVVDDgS~D~t-------~----------------------- 307 (852)
T PRK11498 261 TVDIFVPTYN---EDLNVVKNTIYASLGIDWPKDKLNIWILDDGGREEF-------R----------------------- 307 (852)
T ss_pred cEEEEEecCC---CcHHHHHHHHHHHHhccCCCCceEEEEEeCCCChHH-------H-----------------------
Confidence 9999999999 999999999999999999999999999999987611 0
Q ss_pred hhhccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCCcCccccCCCCCCCCCCCCCCcchhhhhccCCCCcc
Q 001382 447 FAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVRD 526 (1089)
Q Consensus 447 Fs~~~d~~~~~~~~~f~~err~~kreYee~k~rI~~l~~~~~~~p~~~w~m~dg~~w~~~~~rdHp~iiqv~l~~~g~~d 526 (1089)
+ +++ +
T Consensus 308 ----------------------------~-------la~-------~--------------------------------- 312 (852)
T PRK11498 308 ----------------------------Q-------FAQ-------E--------------------------------- 312 (852)
T ss_pred ----------------------------H-------HHH-------H---------------------------------
Confidence 1 110 0
Q ss_pred ccCCccCcEEEEeccCCCCCCCCCchhhhHHHHHhhccccCCCEEEEecCCCCCCchHHHHHHHHhh-cCCCCCceEEEE
Q 001382 527 IEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFM-MDPTSGKKICYV 605 (1089)
Q Consensus 527 ~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSa~~tngp~Il~lDcD~~~~~p~~Lr~amcff-~Dp~~g~~v~~V 605 (1089)
.++.|+.|++ +.|+||||+|++++. ++||||+++||||+ +++++|+++|++| .|| ++|+|
T Consensus 313 ------~~v~yI~R~~----n~~gKAGnLN~aL~~----a~GEyIavlDAD~i-p~pdfL~~~V~~f~~dP----~VglV 373 (852)
T PRK11498 313 ------VGVKYIARPT----HEHAKAGNINNALKY----AKGEFVAIFDCDHV-PTRSFLQMTMGWFLKDK----KLAMM 373 (852)
T ss_pred ------CCcEEEEeCC----CCcchHHHHHHHHHh----CCCCEEEEECCCCC-CChHHHHHHHHHHHhCC----CeEEE
Confidence 0267899877 678999999999996 79999999999997 8999999999864 788 89999
Q ss_pred ecCccccCCCccc-------cccchhhhhhhhhccccccCCCccccccccchhhhhhcCCCCCCCCCCCCCcCCCCCCcc
Q 001382 606 QFPQRFDGIDRHD-------RYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKPPRKTCNCLPKWC 678 (1089)
Q Consensus 606 Q~PQ~F~nid~~D-------~y~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~ 678 (1089)
|+||.|+|.|+.. .+.+++..||+.+++|+|.+++++++||++++||+||
T Consensus 374 Qtp~~f~n~dp~~rnl~~~~~~~~e~~~fy~~iq~g~~~~~a~~~~Gs~aviRReaL----------------------- 430 (852)
T PRK11498 374 QTPHHFFSPDPFERNLGRFRKTPNEGTLFYGLVQDGNDMWDATFFCGSCAVIRRKPL----------------------- 430 (852)
T ss_pred EcceeccCCchHHHhhHHHhhcccchhHHHHHHHhHHHhhcccccccceeeeEHHHH-----------------------
Confidence 9999999987642 2457788999999999999999999999999999887
Q ss_pred cccccccccccccCCCccCCcchhhhhhhhhhhhhccccccccCchhHHHhhhcCCchHHHHHHhHhhCCCCCCCChhhH
Q 001382 679 CCCCRSRKKSKKGKSNKKNKDTSKQIYALENIEEGIEDNEKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGASTASL 758 (1089)
Q Consensus 679 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~ 758 (1089)
+++||+++
T Consensus 431 -----------------------------------------------------------------eeVGGfd~------- 438 (852)
T PRK11498 431 -----------------------------------------------------------------DEIGGIAV------- 438 (852)
T ss_pred -----------------------------------------------------------------HHhcCCCC-------
Confidence 36788775
Q ss_pred HHHhHHhhcccccccCccccccCcccccccchHHHHHHHHhCCcEEEEecCCCCcccccCCCCHHHHHHhhheecchhhH
Q 001382 759 LNEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVE 838 (1089)
Q Consensus 759 ~~ea~~v~sc~YE~~T~WG~evGW~ygSvTEDi~Tg~rLh~rGWrsvY~~p~~~Af~G~aP~tl~~~l~QR~RWA~G~lQ 838 (1089)
+++|||++++++||++||+++|++. ..+ .|++|+|++++++||.||++|++|
T Consensus 439 --------------------------~titED~dlslRL~~~Gyrv~yl~~-~~a-~glaPesl~~~~~QR~RWarG~lQ 490 (852)
T PRK11498 439 --------------------------ETVTEDAHTSLRLHRRGYTSAYMRI-PQA-AGLATESLSAHIGQRIRWARGMVQ 490 (852)
T ss_pred --------------------------CccCccHHHHHHHHHcCCEEEEEec-cce-eEECCCCHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999954 444 799999999999999999999999
Q ss_pred HHHhhccccccccCCCCCcccchhhhhhhhhHhHHHHHHHHHHHHHHHHHhCCcccccchhHHHHHHHHHHHHHHHHHHH
Q 001382 839 ILLSRHCPIWYGYGCGLKPLERFSYINSVVYPITSIPLIAYCTLPAICLLTGKFIVPEISNYASILFMALFISIAATGIL 918 (1089)
Q Consensus 839 Il~sk~~Pl~~g~~k~L~~~QRL~Yl~~~ly~l~sl~~liylllP~l~Ll~G~~ivp~~s~~~~i~fi~lfls~~~~~lL 918 (1089)
+++ +++|++ .++|++.||++|+++++|++.++++++|+++|++|+++|+.++.+.. .. +++.++++++...+
T Consensus 491 i~r-~~~pl~---~~gL~~~qRl~y~~~~l~~l~g~~~l~~l~~Pl~~l~~gi~~i~a~~---~~-i~~y~lP~~~~~~l 562 (852)
T PRK11498 491 IFR-LDNPLT---GKGLKLAQRLCYANAMLHFLSGIPRLIFLTAPLAFLLLHAYIIYAPA---LM-IALFVLPHMIHASL 562 (852)
T ss_pred HHH-HhChhc---cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChheeCCh---HH-HHHHHHHHHHHHHH
Confidence 997 578987 68999999999999999999999999999999999999998775422 11 22333555555445
Q ss_pred Hhhc-cCCcccccccchhhhhhhhhHHHHHHHHHHHHHHhcCCccceeeCCCCCCCCCcccceeeccccchHHHHHHHHH
Q 001382 919 EMQW-GGVGIHDWWRNEQFWVIGGASSHLFALIQGLLKVVGGVNTNFTVTSKAADDGEFSDLYLFKWTSLLIPPLTLLVF 997 (1089)
Q Consensus 919 e~~w-sG~s~~~wWrne~~W~I~~~sa~l~Av~~aLlk~L~g~~~~F~VTpKg~~~~~~~~ly~f~ws~L~iP~~~Llil 997 (1089)
...| +|.....||+ |.|. .+.++.++. ..+...+++++.+|+||+|++..++. .|+|. ++.|+++++++
T Consensus 563 ~~~~~~g~~r~~~ws-eiye---~v~a~~l~~-~~~~~ll~p~~~~F~VTpKg~~~~~~----~~~~~-~~~P~~~L~~L 632 (852)
T PRK11498 563 TNSRIQGKYRHSFWS-EIYE---TVLAWYIAP-PTTVALFNPHKGKFNVTAKGGLVEEE----YVDWV-ISRPYIFLVLL 632 (852)
T ss_pred HHHHhcCcchHhHHH-HHHH---HHHHHHHHH-HHHHHHcCccCCCcccCCCCcccccc----ceehH-HHHHHHHHHHH
Confidence 4433 3333344553 4332 233433332 22333678899999999998753321 25665 67899999999
Q ss_pred HHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHHHh
Q 001382 998 NLIGVIIGVADAISNGYETWGPLFGKLFFSLWVILHLYPFLKGF 1041 (1089)
Q Consensus 998 nliaiv~Gi~r~i~~~~~~wg~l~g~l~~~~Wvl~~l~Pfl~gL 1041 (1089)
|++|+++|+++.+.+.. ....+.+++++|+++|++-+..++
T Consensus 633 ~l~gl~~g~~r~~~~~~---~~~~~~~~~~~W~~~nl~~l~~a~ 673 (852)
T PRK11498 633 NLVGVAVGIWRYFYGPP---NEILTVIVSLVWVFYNLIILGGAV 673 (852)
T ss_pred HHHHHHHHHHHHHhCCc---ccchhhhhhHHHHHHHHHHHHHHH
Confidence 99999999999875331 223456799999999998887777
No 13
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=100.00 E-value=4.1e-45 Score=322.13 Aligned_cols=80 Identities=78% Similarity=1.481 Sum_probs=42.1
Q ss_pred cccccccCCccccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCCccccccccCCCCCCCCCCCCCcc
Q 001382 28 VTSVKELSGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRVDGDEEEDDTD 107 (1089)
Q Consensus 28 ~~~~~~~~~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Ykr~kgsprv~gd~ee~~~d 107 (1089)
+||++++++|+||||||+||+++|||+|||||||+|||||||||||||||+|+|||||||||||||||||+|||||||+|
T Consensus 1 pkp~k~~~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr~kgsp~V~gDeeedd~d 80 (80)
T PF14569_consen 1 PKPLKNLNGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKRHKGSPRVEGDEEEDDVD 80 (80)
T ss_dssp SS--S--SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B----TT----TTS-----S-
T ss_pred CcChhhcCCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcccccCCCCCCCCccccCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999998876
No 14
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=100.00 E-value=4.3e-36 Score=364.16 Aligned_cols=362 Identities=19% Similarity=0.229 Sum_probs=245.4
Q ss_pred hhHHHHHHHHHHHHHhhhhhccccccch---------hhHHHHHHHHHHHHHHHHHHhhcCcccccccchhhhHhhhhhc
Q 001382 287 PYRLIILLRLVILGLFFHYRILHPVNDA---------YGLWLTSVICEIWFAVSWILDQFPKWDPIVRETYLDRLSLRYE 357 (1089)
Q Consensus 287 ~yR~~~~~~l~~l~~yl~wRi~~~~~~a---------~~lwl~~~~~Ei~f~~~wiL~q~~kw~Pi~R~~~~drL~~r~~ 357 (1089)
..|+++++..+++..|..|+....+... ..+..+++..+.+.+.+-++..+.... .|... .+...-.
T Consensus 40 ~rr~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~lf~~~~~w~~~~~~~a~~g~~~~~~--~~~~~--~~~~~~~ 115 (691)
T PRK05454 40 LRRLILLGLTLAQTAVATWEMKAVLPYGGWTLLEPALLVLFALLFAWISLGFWTALMGFLQLLR--GRDKY--SISASAA 115 (691)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCCcc--cCCcccc
Confidence 3577777777888899999987644321 112223334444444444444332211 11111 0110000
Q ss_pred cCCCCCCCCceeEEEecCCCCCCCHHHH----HHHHHHHHcCCCCCCCcEEEEcCCCchhhhHHHHhhhHHHhhhhhhhh
Q 001382 358 KEGKPSDLADIDIFVSTVDPMKEPPLIT----ANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFC 433 (1089)
Q Consensus 358 ~~~~~~~lP~VDvfV~T~dP~kEPp~v~----~nTvls~la~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFC 433 (1089)
.+......|.|+|+||+|| |++..+ ..|+.|+.+.||| +++.+||+|||.++-+-.
T Consensus 116 ~~~~~~~~~~VaVliP~yN---Ed~~~v~~~L~a~~~Sl~~~~~~-~~~e~~vLdD~~d~~~~~---------------- 175 (691)
T PRK05454 116 GDPPPPPEARTAILMPIYN---EDPARVFAGLRAMYESLAATGHG-AHFDFFILSDTRDPDIAA---------------- 175 (691)
T ss_pred cCCCCCCCCceEEEEeCCC---CChHHHHHHHHHHHHHHHhcCCC-CCEEEEEEECCCChhHHH----------------
Confidence 1123456899999999999 998754 5556677789998 589999999998873211
Q ss_pred hhcCCCCCCchhhhhhccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCCcCccccCCCCCCCCCCCCCCcc
Q 001382 434 KKFKIEPRAPEWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPG 513 (1089)
Q Consensus 434 kk~~Iepr~Pe~YFs~~~d~~~~~~~~~f~~err~~kreYee~k~rI~~l~~~~~~~p~~~w~m~dg~~w~~~~~rdHp~ 513 (1089)
.|+ +.|+++..+. .
T Consensus 176 ------------------------------~e~----~~~~~L~~~~-------~------------------------- 189 (691)
T PRK05454 176 ------------------------------AEE----AAWLELRAEL-------G------------------------- 189 (691)
T ss_pred ------------------------------HHH----HHHHHHHHhc-------C-------------------------
Confidence 011 1233322110 0
Q ss_pred hhhhhccCCCCccccCCccCcEEEEeccCCCCCCCCCchhhhHHHHHhhccccCCCEEEEecCCCCCCchHHHHHHHHhh
Q 001382 514 MIQVFLGQNGVRDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFM 593 (1089)
Q Consensus 514 iiqv~l~~~g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSa~~tngp~Il~lDcD~~~~~p~~Lr~amcff 593 (1089)
.-+++.|..|++ |.|+||||+|.+++.++ .+++||++||||++ +.+++|++++.+|
T Consensus 190 -----------------~~~~i~yr~R~~----n~~~KaGNl~~~~~~~~--~~~eyivvLDADs~-m~~d~L~~lv~~m 245 (691)
T PRK05454 190 -----------------GEGRIFYRRRRR----NVGRKAGNIADFCRRWG--GAYDYMVVLDADSL-MSGDTLVRLVRLM 245 (691)
T ss_pred -----------------CCCcEEEEECCc----CCCccHHHHHHHHHhcC--CCcCEEEEEcCCCC-CCHHHHHHHHHHH
Confidence 012589988887 77899999999999765 57899999999998 7999999999988
Q ss_pred c-CCCCCceEEEEecCccccCCCcc-ccccc-hhhhhhhhhccccccCCC--ccccccccchhhhhhcCCCCCCCCCCCC
Q 001382 594 M-DPTSGKKICYVQFPQRFDGIDRH-DRYSN-RNVVFFDINMKGLDGIQG--PIYVGTGCVFRRQALYGYDAPVKKKPPR 668 (1089)
Q Consensus 594 ~-Dp~~g~~v~~VQ~PQ~F~nid~~-D~y~n-~~~vFfdi~~~glDg~qg--p~yvGTgcvfRR~ALyG~~p~~~~~~~~ 668 (1089)
. || ++|.||+|+.+.|.+.- .|..+ ...++.++...|++.||+ ..|+|+|+++||+|+..
T Consensus 246 ~~dP----~vGlVQt~~~~~n~~slfaR~qqf~~~~y~~~~~~G~~~w~~~~g~f~G~naIiR~~af~~----------- 310 (691)
T PRK05454 246 EANP----RAGLIQTLPVAVGADTLFARLQQFATRVYGPLFAAGLAWWQGGEGNYWGHNAIIRVKAFAE----------- 310 (691)
T ss_pred hhCc----CEEEEeCCccCcCCCCHHHHHHHHHHHHHHHHHHhhhhhhccCccccccceEEEEHHHHHH-----------
Confidence 5 99 89999999999887531 12111 234566667788887774 57999999999999842
Q ss_pred CcCCCCCCcccccccccccccccCCCccCCcchhhhhhhhhhhhhccccccccCchhHHHhhhcCCchHHHHHHhHhhCC
Q 001382 669 KTCNCLPKWCCCCCRSRKKSKKGKSNKKNKDTSKQIYALENIEEGIEDNEKSSLMPQIKFEKKFGQSPVFIASTLKEAGG 748 (1089)
Q Consensus 669 ~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG 748 (1089)
|||... +.+.||
T Consensus 311 ------------~~glp~--------------------------------------------------------L~g~~p 322 (691)
T PRK05454 311 ------------HCGLPP--------------------------------------------------------LPGRGP 322 (691)
T ss_pred ------------hcCCcc--------------------------------------------------------ccccCC
Confidence 112100 011233
Q ss_pred CCCCCChhhHHHHhHHhhcccccccCccccccCcccccccchHHHHHHHHhCCcEEEEecCCCCcccccCCCCHHHHHHh
Q 001382 749 VPTGASTASLLNEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQ 828 (1089)
Q Consensus 749 ~p~~~~~~~~~~ea~~v~sc~YE~~T~WG~evGW~ygSvTEDi~Tg~rLh~rGWrsvY~~p~~~Af~G~aP~tl~~~l~Q 828 (1089)
|..++++||+++|.+|+++||+++|+ |+....++++|+|+.++++|
T Consensus 323 ---------------------------------~~~~~LseD~~~a~~l~~~GyrV~~~-pd~~~~~ee~P~tl~~~~~q 368 (691)
T PRK05454 323 ---------------------------------FGGHILSHDFVEAALMRRAGWGVWLA-PDLPGSYEELPPNLLDELKR 368 (691)
T ss_pred ---------------------------------CCCCcccHHHHHHHHHHHCCCEEEEc-CccccccccCCCCHHHHHHH
Confidence 44469999999999999999999999 55433389999999999999
Q ss_pred hheecchhhHHHHhhccccccccCCCCCcccchhhhhhhhhHhHHHHHHH-HHHHHHHH
Q 001382 829 VLRWALGSVEILLSRHCPIWYGYGCGLKPLERFSYINSVVYPITSIPLIA-YCTLPAIC 886 (1089)
Q Consensus 829 R~RWA~G~lQIl~sk~~Pl~~g~~k~L~~~QRL~Yl~~~ly~l~sl~~li-ylllP~l~ 886 (1089)
|.||++|++|++.. +. .+++++.+|++|++.++.++.+...++ +++.|++.
T Consensus 369 r~RW~~G~lQ~l~~----l~---~~gl~~~~R~~~l~g~~~yl~~P~wll~l~l~~~~~ 420 (691)
T PRK05454 369 DRRWCQGNLQHLRL----LL---AKGLHPVSRLHFLTGIMSYLSAPLWLLFLLLGTALA 420 (691)
T ss_pred HHHHHhchHHHHHH----HH---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998752 33 578999999999887776666544333 33344433
No 15
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=100.00 E-value=1.7e-33 Score=306.39 Aligned_cols=182 Identities=23% Similarity=0.354 Sum_probs=145.5
Q ss_pred CcEEEEeccCCCCCCCCCchhhhHHHHHhhccccCCCEEEEecCCCCCCchHHHHHHHHhhc-CCCCCceEEEEecCccc
Q 001382 533 PRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMM-DPTSGKKICYVQFPQRF 611 (1089)
Q Consensus 533 P~lvYvsRekrPg~~hh~KAGalNallrvSa~~tngp~Il~lDcD~~~~~p~~Lr~amcff~-Dp~~g~~v~~VQ~PQ~F 611 (1089)
++++|++|++ +.|+||||||++++..+ ++++||+++|||+. +.|++|++++.+|. || +||.||+||+|
T Consensus 67 ~~v~~~~r~~----~~g~Kag~l~~~~~~~~--~~~~~i~~~DaD~~-~~p~~l~~~v~~~~~~~----~vg~vq~~~~~ 135 (254)
T cd04191 67 GRIYYRRRRE----NTGRKAGNIADFCRRWG--SRYDYMVVLDADSL-MSGDTIVRLVRRMEANP----RAGIIQTAPKL 135 (254)
T ss_pred CcEEEEEcCC----CCCccHHHHHHHHHHhC--CCCCEEEEEeCCCC-CCHHHHHHHHHHHHhCC----CEEEEeCCcee
Confidence 4699999999 56799999999998532 58899999999997 89999999999885 99 89999999999
Q ss_pred cCCCcc-ccc-cchhhhhhhhhccccccCCC--ccccccccchhhhhhcCCCCCCCCCCCCCcCCCCCCccccccccccc
Q 001382 612 DGIDRH-DRY-SNRNVVFFDINMKGLDGIQG--PIYVGTGCVFRRQALYGYDAPVKKKPPRKTCNCLPKWCCCCCRSRKK 687 (1089)
Q Consensus 612 ~nid~~-D~y-~n~~~vFfdi~~~glDg~qg--p~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~c~~~~~~ 687 (1089)
.|.+.- .+. +-++..|..+.+.|++.|++ .+++||+.++||+||... |
T Consensus 136 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~al~~~----------------------~------ 187 (254)
T cd04191 136 IGAETLFARLQQFANRLYGPVFGRGLAAWQGGEGNYWGHNAIIRVAAFMEH----------------------C------ 187 (254)
T ss_pred ECCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCccCccceEEEEEHHHHHHh----------------------c------
Confidence 987642 111 11356677778888887765 689999999999998310 0
Q ss_pred ccccCCCccCCcchhhhhhhhhhhhhccccccccCchhHHHhhhcCCchHHHHHHhHhhCCCCCCCChhhHHHHhHHhhc
Q 001382 688 SKKGKSNKKNKDTSKQIYALENIEEGIEDNEKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGASTASLLNEAIHVIS 767 (1089)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~~~ea~~v~s 767 (1089)
.+.++||+.
T Consensus 188 ------------------------------------------------------~~~~i~g~g----------------- 196 (254)
T cd04191 188 ------------------------------------------------------ALPVLPGRP----------------- 196 (254)
T ss_pred ------------------------------------------------------CCccccCCC-----------------
Confidence 001233321
Q ss_pred ccccccCccccccCcccccccchHHHHHHHHhCCcEEEEecCCCCcccccCCCCHHHHHHhhheecchhhH
Q 001382 768 CGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVE 838 (1089)
Q Consensus 768 c~YE~~T~WG~evGW~ygSvTEDi~Tg~rLh~rGWrsvY~~p~~~Af~G~aP~tl~~~l~QR~RWA~G~lQ 838 (1089)
||..++++||+++|++++.+||+++|. |...+.++++|++++++++||.||++|++|
T Consensus 197 -------------~~~~~~l~eD~~l~~~~~~~G~ri~~~-~~~~~~~~~~p~~~~~~~~qr~RW~~G~~q 253 (254)
T cd04191 197 -------------PFGGHILSHDFVEAALMRRAGWEVRLA-PDLEGSYEECPPTLIDFLKRDRRWCQGNLQ 253 (254)
T ss_pred -------------CCCCCeecHHHHHHHHHHHcCCEEEEc-cCCcceEeECCCCHHHHHHHHHHHHhhcCc
Confidence 355679999999999999999999999 544322789999999999999999999987
No 16
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=2.8e-30 Score=296.01 Aligned_cols=233 Identities=29% Similarity=0.419 Sum_probs=170.6
Q ss_pred CCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCchhhhHHHHhhhHHHhhhhhhhhhhcCCCCCCch
Q 001382 365 LADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRAPE 444 (1089)
Q Consensus 365 lP~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFCkk~~Iepr~Pe 444 (1089)
+|.|||+||++| |++.++.+|+.|++++|||. +.++|.|||+++-|++- |++++.+
T Consensus 53 ~p~vsviiP~yn---E~~~~~~~~l~s~~~~dyp~--~evivv~d~~~d~~~~~--------------~~~~~~~----- 108 (439)
T COG1215 53 LPKVSVIIPAYN---EEPEVLEETLESLLSQDYPR--YEVIVVDDGSTDETYEI--------------LEELGAE----- 108 (439)
T ss_pred CCceEEEEecCC---CchhhHHHHHHHHHhCCCCC--ceEEEECCCCChhHHHH--------------HHHHHhh-----
Confidence 699999999998 99999999999999999995 78999999998854442 2221100
Q ss_pred hhhhhccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCCcCccccCCCCCCCCCCCCCCcchhhhhccCCCC
Q 001382 445 WYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGV 524 (1089)
Q Consensus 445 ~YFs~~~d~~~~~~~~~f~~err~~kreYee~k~rI~~l~~~~~~~p~~~w~m~dg~~w~~~~~rdHp~iiqv~l~~~g~ 524 (1089)
| +..+
T Consensus 109 ----------------------------~--------------------------------------~~~~--------- 113 (439)
T COG1215 109 ----------------------------Y--------------------------------------GPNF--------- 113 (439)
T ss_pred ----------------------------c--------------------------------------Ccce---------
Confidence 0 0000
Q ss_pred ccccCCccCcEEEEeccCCCCCCCCCchhhhHHHHHhhccccCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCceEEE
Q 001382 525 RDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICY 604 (1089)
Q Consensus 525 ~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSa~~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~v~~ 604 (1089)
+++|. ++ .+++|+||+|.++.. +.+|+|+++|||++ +.|++|++++..|.|+. .+|.
T Consensus 114 ---------~~~~~--~~----~~~gK~~al~~~l~~----~~~d~V~~~DaD~~-~~~d~l~~~~~~f~~~~---~~~v 170 (439)
T COG1215 114 ---------RVIYP--EK----KNGGKAGALNNGLKR----AKGDVVVILDADTV-PEPDALRELVSPFEDPP---VGAV 170 (439)
T ss_pred ---------EEEec--cc----cCccchHHHHHHHhh----cCCCEEEEEcCCCC-CChhHHHHHHhhhcCCC---eeEE
Confidence 11211 22 678999999999985 56999999999997 89999999999999884 4479
Q ss_pred EecCccccCCCccccccchhh-----hhhhhhccccccCCCccccccccchhhhhhcCCCCCCCCCCCCCcCCCCCCccc
Q 001382 605 VQFPQRFDGIDRHDRYSNRNV-----VFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKPPRKTCNCLPKWCC 679 (1089)
Q Consensus 605 VQ~PQ~F~nid~~D~y~n~~~-----vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~ 679 (1089)
+|.||.+.+.++....+.... .++-....+.++....++.|++.+|||+|
T Consensus 171 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~G~~~~~rr~a------------------------- 225 (439)
T COG1215 171 VGTPRIRNRPDPSNLLGRIQAIEYLSAFYFRLRAASKGGLISFLSGSSSAFRRSA------------------------- 225 (439)
T ss_pred eCCceeeecCChhhhcchhcchhhhhhHHHhhhhhhhcCCeEEEcceeeeEEHHH-------------------------
Confidence 999999888764111111111 11111111222223445555555555554
Q ss_pred ccccccccccccCCCccCCcchhhhhhhhhhhhhccccccccCchhHHHhhhcCCchHHHHHHhHhhCCCCCCCChhhHH
Q 001382 680 CCCRSRKKSKKGKSNKKNKDTSKQIYALENIEEGIEDNEKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGASTASLL 759 (1089)
Q Consensus 680 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~~ 759 (1089)
|++.||+.
T Consensus 226 ---------------------------------------------------------------L~~~g~~~--------- 233 (439)
T COG1215 226 ---------------------------------------------------------------LEEVGGWL--------- 233 (439)
T ss_pred ---------------------------------------------------------------HHHhCCCC---------
Confidence 45677644
Q ss_pred HHhHHhhcccccccCccccccCcccccccchHHHHHHHHhCCcEEEEecCCCCcccccCCCCHHHHHHhhheecchhhHH
Q 001382 760 NEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEI 839 (1089)
Q Consensus 760 ~ea~~v~sc~YE~~T~WG~evGW~ygSvTEDi~Tg~rLh~rGWrsvY~~p~~~Af~G~aP~tl~~~l~QR~RWA~G~lQI 839 (1089)
..++|||.+++++||.+|||++|++. ..+ ++++|+|+.++++||.||++|++|+
T Consensus 234 ------------------------~~~i~ED~~lt~~l~~~G~~~~~~~~-~~~-~~~~p~t~~~~~~Qr~RW~~g~~~~ 287 (439)
T COG1215 234 ------------------------EDTITEDADLTLRLHLRGYRVVYVPE-AIV-WTEAPETLKELWRQRLRWARGGLQV 287 (439)
T ss_pred ------------------------CCceeccHHHHHHHHHCCCeEEEeec-ceE-eeeCcccHHHHHHHHHHHHccccee
Confidence 46999999999999999999999954 333 8999999999999999999999999
Q ss_pred HHh
Q 001382 840 LLS 842 (1089)
Q Consensus 840 l~s 842 (1089)
+..
T Consensus 288 ~~~ 290 (439)
T COG1215 288 LLL 290 (439)
T ss_pred eeh
Confidence 974
No 17
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=99.97 E-value=6.5e-29 Score=289.44 Aligned_cols=232 Identities=22% Similarity=0.273 Sum_probs=166.7
Q ss_pred CCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCchhhhHHHHhhhHHHhhhhhhhhhhcCCCCCC
Q 001382 363 SDLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRA 442 (1089)
Q Consensus 363 ~~lP~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFCkk~~Iepr~ 442 (1089)
...|.|+|+||+|| |+. .+.+|+.|++++||| ++.++|.|||+++-|.+.+.+
T Consensus 72 ~~~p~vsViIP~yN---E~~-~i~~~l~sll~q~yp--~~eIivVdDgs~D~t~~~~~~--------------------- 124 (444)
T PRK14583 72 KGHPLVSILVPCFN---EGL-NARETIHAALAQTYT--NIEVIAINDGSSDDTAQVLDA--------------------- 124 (444)
T ss_pred CCCCcEEEEEEeCC---CHH-HHHHHHHHHHcCCCC--CeEEEEEECCCCccHHHHHHH---------------------
Confidence 35799999999998 875 568999999999999 589999999998743332211
Q ss_pred chhhhhhccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCCcCccccCCCCCCCCCCCCCCcchhhhhccCC
Q 001382 443 PEWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQN 522 (1089)
Q Consensus 443 Pe~YFs~~~d~~~~~~~~~f~~err~~kreYee~k~rI~~l~~~~~~~p~~~w~m~dg~~w~~~~~rdHp~iiqv~l~~~ 522 (1089)
+.+
T Consensus 125 ----------------------------------------~~~------------------------------------- 127 (444)
T PRK14583 125 ----------------------------------------LLA------------------------------------- 127 (444)
T ss_pred ----------------------------------------HHH-------------------------------------
Confidence 110
Q ss_pred CCccccCCccCcEEEEeccCCCCCCCCCchhhhHHHHHhhccccCCCEEEEecCCCCCCchHHHHHHHHhh-cCCCCCce
Q 001382 523 GVRDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFM-MDPTSGKK 601 (1089)
Q Consensus 523 g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSa~~tngp~Il~lDcD~~~~~p~~Lr~amcff-~Dp~~g~~ 601 (1089)
+.|++.++.++++ ..||+|+|++++. ++++||+++|+|++ ++|++|++.+..| .|| +
T Consensus 128 --------~~~~v~vv~~~~n-----~Gka~AlN~gl~~----a~~d~iv~lDAD~~-~~~d~L~~lv~~~~~~~----~ 185 (444)
T PRK14583 128 --------EDPRLRVIHLAHN-----QGKAIALRMGAAA----ARSEYLVCIDGDAL-LDKNAVPYLVAPLIANP----R 185 (444)
T ss_pred --------hCCCEEEEEeCCC-----CCHHHHHHHHHHh----CCCCEEEEECCCCC-cCHHHHHHHHHHHHhCC----C
Confidence 0023445554432 3599999999985 68999999999997 8999999999755 567 8
Q ss_pred EEEEecCccccCCCcc-ccc-cchhhhhhhhhccccccCCCccc-cccccchhhhhhcCCCCCCCCCCCCCcCCCCCCcc
Q 001382 602 ICYVQFPQRFDGIDRH-DRY-SNRNVVFFDINMKGLDGIQGPIY-VGTGCVFRRQALYGYDAPVKKKPPRKTCNCLPKWC 678 (1089)
Q Consensus 602 v~~VQ~PQ~F~nid~~-D~y-~n~~~vFfdi~~~glDg~qgp~y-vGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~ 678 (1089)
++.||..++..|.+.. .+. ..+...++....++.+-.+..+. .|++++|||+
T Consensus 186 ~g~v~g~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~g~~~~~sG~~~~~rr~------------------------- 240 (444)
T PRK14583 186 TGAVTGNPRIRTRSTLIGRVQVGEFSSIIGLIKRTQRVYGQVFTVSGVVAAFRRR------------------------- 240 (444)
T ss_pred eEEEEccceecCCCcchhhHHHHHHHHHHHHHHHHHHHhCCceEecCceeEEEHH-------------------------
Confidence 9999998776543211 111 11222333333333333333222 2444445544
Q ss_pred cccccccccccccCCCccCCcchhhhhhhhhhhhhccccccccCchhHHHhhhcCCchHHHHHHhHhhCCCCCCCChhhH
Q 001382 679 CCCCRSRKKSKKGKSNKKNKDTSKQIYALENIEEGIEDNEKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGASTASL 758 (1089)
Q Consensus 679 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~ 758 (1089)
+++++||+++
T Consensus 241 ---------------------------------------------------------------al~~vGg~~~------- 250 (444)
T PRK14583 241 ---------------------------------------------------------------ALADVGYWSP------- 250 (444)
T ss_pred ---------------------------------------------------------------HHHHcCCCCC-------
Confidence 4456787554
Q ss_pred HHHhHHhhcccccccCccccccCcccccccchHHHHHHHHhCCcEEEEecCCCCcccccCCCCHHHHHHhhheecchhhH
Q 001382 759 LNEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVE 838 (1089)
Q Consensus 759 ~~ea~~v~sc~YE~~T~WG~evGW~ygSvTEDi~Tg~rLh~rGWrsvY~~p~~~Af~G~aP~tl~~~l~QR~RWA~G~lQ 838 (1089)
++++||++++++|+.+||++.|+ |+..+ ++++|+|+.++++||.||++|.+|
T Consensus 251 --------------------------~~i~ED~dl~~rl~~~G~~i~~~-p~a~~-~~~~p~t~~~~~~Qr~RW~~G~~~ 302 (444)
T PRK14583 251 --------------------------DMITEDIDISWKLQLKHWSVFFE-PRGLC-WILMPETLRGLWKQRLRWAQGGAE 302 (444)
T ss_pred --------------------------CcccccHHHHHHHHHcCCeEEEe-eccEE-eeeCCCCHHHHHHHHHHHhCcHHH
Confidence 68999999999999999999999 55554 899999999999999999999999
Q ss_pred HHHhh
Q 001382 839 ILLSR 843 (1089)
Q Consensus 839 Il~sk 843 (1089)
+++++
T Consensus 303 ~~~~~ 307 (444)
T PRK14583 303 VFLKN 307 (444)
T ss_pred HHHHH
Confidence 99864
No 18
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=99.96 E-value=2.9e-27 Score=275.58 Aligned_cols=288 Identities=17% Similarity=0.173 Sum_probs=191.7
Q ss_pred CCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCchhhhHHHHhhhHHHhhhhhhhhhhcCCCCC
Q 001382 362 PSDLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPR 441 (1089)
Q Consensus 362 ~~~lP~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFCkk~~Iepr 441 (1089)
++.+|.|+|+||+|| |+ ..+.+||.|+++++||.+++.|+|.|||+++-|.+.+.|+
T Consensus 45 ~~~~P~vsVIIP~yN---e~-~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~il~~~------------------- 101 (439)
T TIGR03111 45 IGKLPDITIIIPVYN---SE-DTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQVFCRA------------------- 101 (439)
T ss_pred cCCCCCEEEEEEeCC---Ch-HHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHHHHHHH-------------------
Confidence 467899999999998 76 7899999999999999999999999999987544422221
Q ss_pred CchhhhhhccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCCcCccccCCCCCCCCCCCCCCcchhhhhccC
Q 001382 442 APEWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQ 521 (1089)
Q Consensus 442 ~Pe~YFs~~~d~~~~~~~~~f~~err~~kreYee~k~rI~~l~~~~~~~p~~~w~m~dg~~w~~~~~rdHp~iiqv~l~~ 521 (1089)
+. .+
T Consensus 102 -----------------------------------~~-------------------------------~~---------- 105 (439)
T TIGR03111 102 -----------------------------------QN-------------------------------EF---------- 105 (439)
T ss_pred -----------------------------------HH-------------------------------hC----------
Confidence 00 00
Q ss_pred CCCccccCCccCcEEEEeccCCCCCCCCCchhhhHHHHHhhccccCCCEEEEecCCCCCCchHHHHHHHHhhc-CCCCCc
Q 001382 522 NGVRDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMM-DPTSGK 600 (1089)
Q Consensus 522 ~g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSa~~tngp~Il~lDcD~~~~~p~~Lr~amcff~-Dp~~g~ 600 (1089)
|++ ++.+.+ +.+.||+|+|++++. ++++||+++|+|++ ++|++|++++..|. ||
T Consensus 106 -----------~~v-~v~~~~----~~~Gka~AlN~gl~~----s~g~~v~~~DaD~~-~~~d~L~~l~~~f~~~~---- 160 (439)
T TIGR03111 106 -----------PGL-SLRYMN----SDQGKAKALNAAIYN----SIGKYIIHIDSDGK-LHKDAIKNMVTRFENNP---- 160 (439)
T ss_pred -----------CCe-EEEEeC----CCCCHHHHHHHHHHH----ccCCEEEEECCCCC-cChHHHHHHHHHHHhCC----
Confidence 111 121111 125799999999985 68999999999998 79999999998775 77
Q ss_pred eEEEEecCccccCCCcccc-------ccchhhhhhhhhccccccCCCccccccccchhhhhhcCCCCCCCCCCCCCcCCC
Q 001382 601 KICYVQFPQRFDGIDRHDR-------YSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKPPRKTCNC 673 (1089)
Q Consensus 601 ~v~~VQ~PQ~F~nid~~D~-------y~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~ 673 (1089)
+++.|+..+.-. .+..+. +..++. +++... ..+.|. +....
T Consensus 161 ~v~~v~g~~~~~-~~~~~~~~~~~~~~~~~~~-~~~y~~--------------------~~l~~r-~~~s~--------- 208 (439)
T TIGR03111 161 DIHAMTGVILTD-KELIEKTKGRFLKLIRRCE-YFEYAQ--------------------AFLAGR-NFESQ--------- 208 (439)
T ss_pred CeEEEEeEEecC-chhhhhhcchhhhHhHHhH-HHHHHH--------------------HHHhhh-HHHHh---------
Confidence 566665543211 110000 000000 011000 000000 00000
Q ss_pred CCCcccccccccccccccCCCccCCcchhhhhhhhhhhhhccccccccCchhHHHhhhcCCchHHHHHHhHhhCCCCCCC
Q 001382 674 LPKWCCCCCRSRKKSKKGKSNKKNKDTSKQIYALENIEEGIEDNEKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGA 753 (1089)
Q Consensus 674 ~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~ 753 (1089)
....| --.|+...|+++++++.||+++
T Consensus 209 ---~~~~~------------------------------------------------~~sGa~~~~Rr~~l~~vggf~~-- 235 (439)
T TIGR03111 209 ---VNSLF------------------------------------------------TLSGAFSAFRRETILKTQLYNS-- 235 (439)
T ss_pred ---cCCeE------------------------------------------------EEccHHHhhhHHHHHHhCCCCC--
Confidence 00000 0125556678888888998765
Q ss_pred ChhhHHHHhHHhhcccccccCccccccCcccccccchHHHHHHHHh-CCcEEEEecCCCCcccccCCCCHHHHHHhhhee
Q 001382 754 STASLLNEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHC-HGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRW 832 (1089)
Q Consensus 754 ~~~~~~~ea~~v~sc~YE~~T~WG~evGW~ygSvTEDi~Tg~rLh~-rGWrsvY~~p~~~Af~G~aP~tl~~~l~QR~RW 832 (1089)
++++||++++++++. .|+++.|+ |+.. ++.++|+|++++++||.||
T Consensus 236 -------------------------------~~i~ED~~l~~rl~~~~g~kv~~~-~~a~-~~~~~p~t~~~~~~QR~RW 282 (439)
T TIGR03111 236 -------------------------------ETVGEDTDMTFQIRELLDGKVYLC-ENAI-FYVDPIDGLNKLYTQRQRW 282 (439)
T ss_pred -------------------------------CCcCccHHHHHHHHHhcCCeEEEC-CCCE-EEEECCcCHHHHHHHHHHH
Confidence 589999999999985 69999998 5444 4889999999999999999
Q ss_pred cchhhHHHHhhccccccccCCCCCcccchhhhhhhhhHhHHHHHHHHHHHHHHHHHhCCccc
Q 001382 833 ALGSVEILLSRHCPIWYGYGCGLKPLERFSYINSVVYPITSIPLIAYCTLPAICLLTGKFIV 894 (1089)
Q Consensus 833 A~G~lQIl~sk~~Pl~~g~~k~L~~~QRL~Yl~~~ly~l~sl~~liylllP~l~Ll~G~~iv 894 (1089)
++|.+|++.....+.. ..+.++.+++.+...+..+...+++.++.++++++.+++..+.
T Consensus 283 ~rG~~qv~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (439)
T TIGR03111 283 QRGELEVSHMFFESAN---KSIKGFFSNFMVRRIMYDHTFAFPRMIWYFAMIFLIFLGYPVK 341 (439)
T ss_pred hccHHHHHHHHHhhhh---hchhhhhhHHHHHHHHhhHhhHHHHHHHHHHHHHHHHhccHHH
Confidence 9999999975333332 3446666666554555555667788888888888888876544
No 19
>PRK11204 N-glycosyltransferase; Provisional
Probab=99.96 E-value=7.2e-27 Score=268.90 Aligned_cols=236 Identities=27% Similarity=0.352 Sum_probs=166.1
Q ss_pred CCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCchhhhHHHHhhhHHHhhhhhhhhhhcCCCCC
Q 001382 362 PSDLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPR 441 (1089)
Q Consensus 362 ~~~lP~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFCkk~~Iepr 441 (1089)
....|.|.|+||++| |+ ..+.+|+.|+++++|| ++.++|.|||.++-|.+.+.
T Consensus 50 ~~~~p~vsViIp~yn---e~-~~i~~~l~sl~~q~yp--~~eiiVvdD~s~d~t~~~l~--------------------- 102 (420)
T PRK11204 50 LKEYPGVSILVPCYN---EG-ENVEETISHLLALRYP--NYEVIAINDGSSDNTGEILD--------------------- 102 (420)
T ss_pred cCCCCCEEEEEecCC---CH-HHHHHHHHHHHhCCCC--CeEEEEEECCCCccHHHHHH---------------------
Confidence 346899999999998 76 6789999999999999 67899999998873322111
Q ss_pred CchhhhhhccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCCcCccccCCCCCCCCCCCCCCcchhhhhccC
Q 001382 442 APEWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQ 521 (1089)
Q Consensus 442 ~Pe~YFs~~~d~~~~~~~~~f~~err~~kreYee~k~rI~~l~~~~~~~p~~~w~m~dg~~w~~~~~rdHp~iiqv~l~~ 521 (1089)
++++
T Consensus 103 ----------------------------------------~~~~------------------------------------ 106 (420)
T PRK11204 103 ----------------------------------------RLAA------------------------------------ 106 (420)
T ss_pred ----------------------------------------HHHH------------------------------------
Confidence 0110
Q ss_pred CCCccccCCccCcEEEEeccCCCCCCCCCchhhhHHHHHhhccccCCCEEEEecCCCCCCchHHHHHHHHhh-cCCCCCc
Q 001382 522 NGVRDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFM-MDPTSGK 600 (1089)
Q Consensus 522 ~g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSa~~tngp~Il~lDcD~~~~~p~~Lr~amcff-~Dp~~g~ 600 (1089)
+.|++.++.++++ ..||+|+|.+++. +++|||+++|+|.+ +.|++|++++..| .||
T Consensus 107 ---------~~~~v~~i~~~~n-----~Gka~aln~g~~~----a~~d~i~~lDaD~~-~~~d~L~~l~~~~~~~~---- 163 (420)
T PRK11204 107 ---------QIPRLRVIHLAEN-----QGKANALNTGAAA----ARSEYLVCIDGDAL-LDPDAAAYMVEHFLHNP---- 163 (420)
T ss_pred ---------hCCcEEEEEcCCC-----CCHHHHHHHHHHH----cCCCEEEEECCCCC-CChhHHHHHHHHHHhCC----
Confidence 0134677776553 3499999999985 68999999999997 7999999999987 588
Q ss_pred eEEEEecCccccCCCccccccchhhhhhhhhccccccCCCccccccccchhhhhhcCCCCCCCCCCCCCcCCCCCCcccc
Q 001382 601 KICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKPPRKTCNCLPKWCCC 680 (1089)
Q Consensus 601 ~v~~VQ~PQ~F~nid~~D~y~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~ 680 (1089)
+++.||...+..|... ..+..+...|... . |..-+-+..+|...
T Consensus 164 ~v~~v~g~~~~~~~~~--~~~~~~~~~~~~~------------~--~~~~~~~~~~~~~~-------------------- 207 (420)
T PRK11204 164 RVGAVTGNPRIRNRST--LLGRIQVGEFSSI------------I--GLIKRAQRVYGRVF-------------------- 207 (420)
T ss_pred CeEEEECCceeccchh--HHHHHHHHHHHHh------------h--hHHHHHHHHhCCce--------------------
Confidence 8999999877654321 1111111101000 0 00000011111000
Q ss_pred cccccccccccCCCccCCcchhhhhhhhhhhhhccccccccCchhHHHhhhcCCchHHHHHHhHhhCCCCCCCChhhHHH
Q 001382 681 CCRSRKKSKKGKSNKKNKDTSKQIYALENIEEGIEDNEKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGASTASLLN 760 (1089)
Q Consensus 681 c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~~~ 760 (1089)
.--|....|+++++++.||+.+
T Consensus 208 -------------------------------------------------~~~G~~~~~rr~~l~~vgg~~~--------- 229 (420)
T PRK11204 208 -------------------------------------------------TVSGVITAFRKSALHEVGYWST--------- 229 (420)
T ss_pred -------------------------------------------------EecceeeeeeHHHHHHhCCCCC---------
Confidence 0013344455666677887654
Q ss_pred HhHHhhcccccccCccccccCcccccccchHHHHHHHHhCCcEEEEecCCCCcccccCCCCHHHHHHhhheecchhhHHH
Q 001382 761 EAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEIL 840 (1089)
Q Consensus 761 ea~~v~sc~YE~~T~WG~evGW~ygSvTEDi~Tg~rLh~rGWrsvY~~p~~~Af~G~aP~tl~~~l~QR~RWA~G~lQIl 840 (1089)
+.++||++++++++.+||++.|+ |+..+ +++.|+|++++++||.||++|.+|.+
T Consensus 230 ------------------------~~~~ED~~l~~rl~~~G~~i~~~-p~~~~-~~~~p~t~~~~~~Qr~RW~~G~~~~l 283 (420)
T PRK11204 230 ------------------------DMITEDIDISWKLQLRGWDIRYE-PRALC-WILMPETLKGLWKQRLRWAQGGAEVL 283 (420)
T ss_pred ------------------------CcccchHHHHHHHHHcCCeEEec-cccEE-EeECcccHHHHHHHHHHHhcCHHHHH
Confidence 57899999999999999999999 65555 89999999999999999999999999
Q ss_pred Hhh
Q 001382 841 LSR 843 (1089)
Q Consensus 841 ~sk 843 (1089)
+++
T Consensus 284 ~~~ 286 (420)
T PRK11204 284 LKN 286 (420)
T ss_pred HHH
Confidence 753
No 20
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=99.94 E-value=3.7e-25 Score=261.20 Aligned_cols=265 Identities=20% Similarity=0.207 Sum_probs=178.5
Q ss_pred CCCceeEEEecCCCCCCCHHHHHHHHHHHH-cCCCCCCCcEEEEcCCCchhhhHHHHhhhHHHhhhhhhhhhhcCCCCCC
Q 001382 364 DLADIDIFVSTVDPMKEPPLITANTVLSIL-AVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRA 442 (1089)
Q Consensus 364 ~lP~VDvfV~T~dP~kEPp~v~~nTvls~l-a~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFCkk~~Iepr~ 442 (1089)
..|.|+|+||++| |. .++.+||.|++ ++||| ++.|+|.||+..+-|.+.+.|.
T Consensus 64 ~~p~vaIlIPA~N---E~-~vI~~~l~s~L~~ldY~--~~eIiVv~d~ndd~T~~~v~~l-------------------- 117 (504)
T PRK14716 64 PEKRIAIFVPAWR---EA-DVIGRMLEHNLATLDYE--NYRIFVGTYPNDPATLREVDRL-------------------- 117 (504)
T ss_pred CCCceEEEEeccC---ch-hHHHHHHHHHHHcCCCC--CeEEEEEECCCChhHHHHHHHH--------------------
Confidence 4899999999998 86 78999999965 79996 7999999999887554433221
Q ss_pred chhhhhhccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCCcCccccCCCCCCCCCCCCCCcchhhhhccCC
Q 001382 443 PEWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQN 522 (1089)
Q Consensus 443 Pe~YFs~~~d~~~~~~~~~f~~err~~kreYee~k~rI~~l~~~~~~~p~~~w~m~dg~~w~~~~~rdHp~iiqv~l~~~ 522 (1089)
++ .||
T Consensus 118 -----------------------------------------~~------------------------~~p---------- 122 (504)
T PRK14716 118 -----------------------------------------AA------------------------RYP---------- 122 (504)
T ss_pred -----------------------------------------HH------------------------HCC----------
Confidence 10 111
Q ss_pred CCccccCCccCcEEEEeccCCCCCCCCCchhhhHHHHHhhc--cccCC---CEEEEecCCCCCCchHHHHHHHHhhcCCC
Q 001382 523 GVRDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSA--VISNA---PYLLNVDCDHYINNSKALREAMCFMMDPT 597 (1089)
Q Consensus 523 g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSa--~~tng---p~Il~lDcD~~~~~p~~Lr~amcff~Dp~ 597 (1089)
++..+. .+++| .+.||+|||.+++..- ....| ++|+++|||.+ ++|++|+.....+.|
T Consensus 123 -----------~v~~vv-~~~~g--p~~Ka~aLN~~l~~~~~~e~~~G~~~d~vvi~DAD~~-v~Pd~Lr~~~~~~~~-- 185 (504)
T PRK14716 123 -----------RVHLVI-VPHDG--PTSKADCLNWIYQAIFAFERERGIRFAIIVLHDAEDV-IHPLELRLYNYLLPR-- 185 (504)
T ss_pred -----------CeEEEE-eCCCC--CCCHHHHHHHHHHHHHHhhhhcCCCcCEEEEEcCCCC-cCccHHHHHHhhcCC--
Confidence 222222 12232 3589999999987531 01234 99999999998 799999976555433
Q ss_pred CCceEEEEecCccccCCCcccc----ccchhhhhhhhhccccccCCCcc-ccccccchhhhhhcCCCCCCCCCCCCCcCC
Q 001382 598 SGKKICYVQFPQRFDGIDRHDR----YSNRNVVFFDINMKGLDGIQGPI-YVGTGCVFRRQALYGYDAPVKKKPPRKTCN 672 (1089)
Q Consensus 598 ~g~~v~~VQ~PQ~F~nid~~D~----y~n~~~vFfdi~~~glDg~qgp~-yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~ 672 (1089)
.++||.|....+.+.+.. |..+....+...++.++.+++++ ..|+|++|||++|--
T Consensus 186 ----~~~VQ~pv~~~~~~~~~~~ag~y~~ef~~~~~~~l~~r~~LG~~~~~~Gtg~afRR~aLe~--------------- 246 (504)
T PRK14716 186 ----HDFVQLPVFSLPRDWGEWVAGTYMDEFAESHLKDLPVREALGGLIPSAGVGTAFSRRALER--------------- 246 (504)
T ss_pred ----CCEEecceeccCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCeeEEeEHHHHHH---------------
Confidence 458999987665443322 22222222334456667777754 678999999888720
Q ss_pred CCCCcccccccccccccccCCCccCCcchhhhhhhhhhhhhccccccccCchhHHHhhhcCCchHHHHHHhHhhCCCCCC
Q 001382 673 CLPKWCCCCCRSRKKSKKGKSNKKNKDTSKQIYALENIEEGIEDNEKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTG 752 (1089)
Q Consensus 673 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~ 752 (1089)
...+.||.
T Consensus 247 ---------------------------------------------------------------------l~~~~GG~--- 254 (504)
T PRK14716 247 ---------------------------------------------------------------------LAAERGGQ--- 254 (504)
T ss_pred ---------------------------------------------------------------------HHhhcCCC---
Confidence 01123431
Q ss_pred CChhhHHHHhHHhhcccccccCccccccCcccccccchHHHHHHHHhCCcEEEEecCCC-------------CcccccCC
Q 001382 753 ASTASLLNEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKR-------------PAFKGSAP 819 (1089)
Q Consensus 753 ~~~~~~~~ea~~v~sc~YE~~T~WG~evGW~ygSvTEDi~Tg~rLh~rGWrsvY~~p~~-------------~Af~G~aP 819 (1089)
+|..+++|||+++|++++.+|||++|++..+ .+.++++|
T Consensus 255 ----------------------------~fd~~sLTED~dLglRL~~~G~rv~y~p~ai~~~~~~~~~~~~~v~t~e~~P 306 (504)
T PRK14716 255 ----------------------------PFDSDSLTEDYDIGLRLKRAGFRQIFVRVRADDTTDRPDRRGEPIATREFFP 306 (504)
T ss_pred ----------------------------CCCCCCcchHHHHHHHHHHCCCEEEEecccccccccccccccccccccccCc
Confidence 2556899999999999999999999984321 12358899
Q ss_pred CCHHHHHHhhheecchh-hHHHHhhc--cccccccCCCCCcccchhhhhhhh
Q 001382 820 INLSDRLHQVLRWALGS-VEILLSRH--CPIWYGYGCGLKPLERFSYINSVV 868 (1089)
Q Consensus 820 ~tl~~~l~QR~RWA~G~-lQIl~sk~--~Pl~~g~~k~L~~~QRL~Yl~~~l 868 (1089)
+|++++++||.||++|. +|...+.- .++. .+.+.|++|.+.+...+
T Consensus 307 ~t~~a~~rQR~RW~~Gi~~Q~~~~~gw~~~~~---~~~~~~rdr~~~~~~~~ 355 (504)
T PRK14716 307 DTFKAAVRQKARWIYGIAFQGWERLGWKGPAA---TKYMLWRDRKGLLTNLL 355 (504)
T ss_pred cCHHHHHHHHHHHHhchHHhhHHhcCCCCchh---hhhhHHHHHHHHHHHHH
Confidence 99999999999999995 78874311 1111 23466777777655444
No 21
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=99.92 E-value=1.1e-24 Score=227.71 Aligned_cols=229 Identities=37% Similarity=0.603 Sum_probs=175.7
Q ss_pred CceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCchhhhHHHHhhhHHHhhhhhhhhhhcCCCCCCchh
Q 001382 366 ADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRAPEW 445 (1089)
Q Consensus 366 P~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFCkk~~Iepr~Pe~ 445 (1089)
|.|.|+||++| |++..+..++.|+++.+||.+++.++|+|||.++-|.+-+
T Consensus 1 p~vsviip~~n---~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~-------------------------- 51 (234)
T cd06421 1 PTVDVFIPTYN---EPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRALA-------------------------- 51 (234)
T ss_pred CceEEEEecCC---CcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHHHH--------------------------
Confidence 67999999998 8888999999999999999988999999999876322110
Q ss_pred hhhhccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCCcCccccCCCCCCCCCCCCCCcchhhhhccCCCCc
Q 001382 446 YFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVR 525 (1089)
Q Consensus 446 YFs~~~d~~~~~~~~~f~~err~~kreYee~k~rI~~l~~~~~~~p~~~w~m~dg~~w~~~~~rdHp~iiqv~l~~~g~~ 525 (1089)
+++.. ++
T Consensus 52 -----------------------------------~~~~~-----------------------~~--------------- 58 (234)
T cd06421 52 -----------------------------------AELGV-----------------------EY--------------- 58 (234)
T ss_pred -----------------------------------HHhhc-----------------------cc---------------
Confidence 01100 00
Q ss_pred cccCCccCcEEEEeccCCCCCCCCCchhhhHHHHHhhccccCCCEEEEecCCCCCCchHHHHHHHHhhcC-CCCCceEEE
Q 001382 526 DIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMD-PTSGKKICY 604 (1089)
Q Consensus 526 d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSa~~tngp~Il~lDcD~~~~~p~~Lr~amcff~D-p~~g~~v~~ 604 (1089)
++.|+.+++ +.+.|+||+|.+++. .+++||+.+|+|.+ .+|++|.+.+..|.+ | +++.
T Consensus 59 --------~~~~~~~~~----~~~~~~~~~n~~~~~----a~~d~i~~lD~D~~-~~~~~l~~l~~~~~~~~----~~~~ 117 (234)
T cd06421 59 --------GYRYLTRPD----NRHAKAGNLNNALAH----TTGDFVAILDADHV-PTPDFLRRTLGYFLDDP----KVAL 117 (234)
T ss_pred --------CceEEEeCC----CCCCcHHHHHHHHHh----CCCCEEEEEccccC-cCccHHHHHHHHHhcCC----CeEE
Confidence 245666655 456899999999995 58999999999998 699999999999876 6 8999
Q ss_pred EecCccccCCCccc----cccchhhhhhhhhccccccCCCccccccccchhhhhhcCCCCCCCCCCCCCcCCCCCCcccc
Q 001382 605 VQFPQRFDGIDRHD----RYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKPPRKTCNCLPKWCCC 680 (1089)
Q Consensus 605 VQ~PQ~F~nid~~D----~y~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~ 680 (1089)
||+++.+.+.+..+ .+......|+.....+...+....+.|++.+|||+++
T Consensus 118 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~~~------------------------- 172 (234)
T cd06421 118 VQTPQFFYNPDPFDWLADGAPNEQELFYGVIQPGRDRWGAAFCCGSGAVVRREAL------------------------- 172 (234)
T ss_pred EecceEEecCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCceecCceeeEeHHHH-------------------------
Confidence 99999998776542 2233344555555555444445556666666666554
Q ss_pred cccccccccccCCCccCCcchhhhhhhhhhhhhccccccccCchhHHHhhhcCCchHHHHHHhHhhCCCCCCCChhhHHH
Q 001382 681 CCRSRKKSKKGKSNKKNKDTSKQIYALENIEEGIEDNEKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGASTASLLN 760 (1089)
Q Consensus 681 c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~~~ 760 (1089)
+++||++.
T Consensus 173 ---------------------------------------------------------------~~ig~~~~--------- 180 (234)
T cd06421 173 ---------------------------------------------------------------DEIGGFPT--------- 180 (234)
T ss_pred ---------------------------------------------------------------HHhCCCCc---------
Confidence 46787764
Q ss_pred HhHHhhcccccccCccccccCcccccccchHHHHHHHHhCCcEEEEecCCCCcccccCCCCHHHHHHhhheecchhhHHH
Q 001382 761 EAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEIL 840 (1089)
Q Consensus 761 ea~~v~sc~YE~~T~WG~evGW~ygSvTEDi~Tg~rLh~rGWrsvY~~p~~~Af~G~aP~tl~~~l~QR~RWA~G~lQIl 840 (1089)
..+.||++++++++.+||+++|++. ..+ ++..|.++..+++||.||.+|.+|++
T Consensus 181 ------------------------~~~~eD~~l~~r~~~~g~~i~~~~~-~~~-~~~~~~~~~~~~~q~~rw~~~~~~~~ 234 (234)
T cd06421 181 ------------------------DSVTEDLATSLRLHAKGWRSVYVPE-PLA-AGLAPETLAAYIKQRLRWARGMLQIL 234 (234)
T ss_pred ------------------------cceeccHHHHHHHHHcCceEEEecC-ccc-cccCCccHHHHHHHHHHHhcCCeeeC
Confidence 3668999999999999999999954 444 89999999999999999999999853
No 22
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=99.92 E-value=5.6e-24 Score=260.14 Aligned_cols=170 Identities=21% Similarity=0.315 Sum_probs=123.3
Q ss_pred CCchhhhHHHHHhhccc---cCC--CEEEEecCCCCCCchHHHHHHHHhhcCCCCCceEEEEecCccccCCCcccc----
Q 001382 549 HKKAGAMNALIRVSAVI---SNA--PYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDGIDRHDR---- 619 (1089)
Q Consensus 549 h~KAGalNallrvSa~~---tng--p~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~v~~VQ~PQ~F~nid~~D~---- 619 (1089)
+.||+|||.++....-. +.+ +.++++|||.+ ++|++|+ .+.+|.++ + ++||.|..-.+...+..
T Consensus 132 ~gKa~aLN~~l~~~~~~e~~~~~~~~vvvi~DAD~~-v~pd~L~-~~~~l~~~----~-~~VQ~p~~p~~~~~~~~~~~~ 204 (727)
T PRK11234 132 TSKADCLNNVLDAITQFERSANFAFAGFILHDAEDV-ISPMELR-LFNYLVER----K-DLIQIPVYPFEREWTHFTSGT 204 (727)
T ss_pred CCHHHHHHHHHHHHHhhhcccCCcccEEEEEcCCCC-CChhHHH-HHHhhcCC----C-CeEeecccCCCccHHHHHHHH
Confidence 47999999998863111 133 56888999997 7999998 67888887 4 79999966333222221
Q ss_pred ccchhhhhhhhhccccccCCCc-cccccccchhhhhhcCCCCCCCCCCCCCcCCCCCCcccccccccccccccCCCccCC
Q 001382 620 YSNRNVVFFDINMKGLDGIQGP-IYVGTGCVFRRQALYGYDAPVKKKPPRKTCNCLPKWCCCCCRSRKKSKKGKSNKKNK 698 (1089)
Q Consensus 620 y~n~~~vFfdi~~~glDg~qgp-~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~ 698 (1089)
|..+....+...+++++.++|+ .+.|+|++|.|+++
T Consensus 205 ~~~EFa~~~~~~~~~~~~lgg~~~l~G~~~af~Rr~l------------------------------------------- 241 (727)
T PRK11234 205 YIDEFAELHGKDVPVREALAGQVPSAGVGTCFSRRAV------------------------------------------- 241 (727)
T ss_pred HHHHHHHHhhhhhHHHHHcCCCcccCCceEEEecccH-------------------------------------------
Confidence 2234444455667888888765 56688888844433
Q ss_pred cchhhhhhhhhhhhhccccccccCchhHHHhhhcCCchHHHHHHhHhhC-CCCCCCChhhHHHHhHHhhcccccccCccc
Q 001382 699 DTSKQIYALENIEEGIEDNEKSSLMPQIKFEKKFGQSPVFIASTLKEAG-GVPTGASTASLLNEAIHVISCGYEDKTDWG 777 (1089)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~G-G~p~~~~~~~~~~ea~~v~sc~YE~~T~WG 777 (1089)
+++.+.| |+
T Consensus 242 ------------------------------------------~al~~~ggg~---------------------------- 251 (727)
T PRK11234 242 ------------------------------------------TALLEDGDGI---------------------------- 251 (727)
T ss_pred ------------------------------------------HHHHHhcCCC----------------------------
Confidence 1233455 43
Q ss_pred cccCcccccccchHHHHHHHHhCCcEEEEecCCC---------------------CcccccCCCCHHHHHHhhheecch-
Q 001382 778 KEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKR---------------------PAFKGSAPINLSDRLHQVLRWALG- 835 (1089)
Q Consensus 778 ~evGW~ygSvTEDi~Tg~rLh~rGWrsvY~~p~~---------------------~Af~G~aP~tl~~~l~QR~RWA~G- 835 (1089)
+|..+++|||+++|++|+.+||+++|+...+ .++++..|+|+++.++||.||.+|
T Consensus 252 ---~~~~~~lTED~dlg~rL~~~G~~v~f~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~t~~~~~rQR~RW~~G~ 328 (727)
T PRK11234 252 ---AFDVQSLTEDYDIGFRLKEKGMREIFVRFPVVDEAKEREQRKFLQHARTSNMICVREYFPDTFSAAVRQKSRWIIGI 328 (727)
T ss_pred ---CcCCCcchHHHHHHHHHHHCCCEEEEcccccccccccccccccccccccccceEEEEeCchhHHHHHHHHHHHHccc
Confidence 4777999999999999999999999995111 335788899999999999999999
Q ss_pred hhHHHH
Q 001382 836 SVEILL 841 (1089)
Q Consensus 836 ~lQIl~ 841 (1089)
.+|.+.
T Consensus 329 ~~q~~~ 334 (727)
T PRK11234 329 VFQGFK 334 (727)
T ss_pred HHHHHH
Confidence 688874
No 23
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=99.92 E-value=2.6e-24 Score=227.05 Aligned_cols=228 Identities=23% Similarity=0.326 Sum_probs=162.2
Q ss_pred CceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCchhhhHHHHhhhHHHhhhhhhhhhhcCCCCCCchh
Q 001382 366 ADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRAPEW 445 (1089)
Q Consensus 366 P~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFCkk~~Iepr~Pe~ 445 (1089)
|.|.|+||+|| |. ..+..++.|+++++||.+++.|+|.|| +++-|++.+.+..
T Consensus 1 p~vSViIp~yN---e~-~~l~~~L~sl~~q~~~~~~~eIiVvD~-s~D~t~~~~~~~~---------------------- 53 (232)
T cd06437 1 PMVTVQLPVFN---EK-YVVERLIEAACALDYPKDRLEIQVLDD-STDETVRLAREIV---------------------- 53 (232)
T ss_pred CceEEEEecCC---cH-HHHHHHHHHHHhcCCCccceEEEEEEC-CCCcHHHHHHHHH----------------------
Confidence 57999999998 85 678999999999999999999999998 6654444332210
Q ss_pred hhhhccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCCcCccccCCCCCCCCCCCCCCcchhhhhccCCCCc
Q 001382 446 YFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVR 525 (1089)
Q Consensus 446 YFs~~~d~~~~~~~~~f~~err~~kreYee~k~rI~~l~~~~~~~p~~~w~m~dg~~w~~~~~rdHp~iiqv~l~~~g~~ 525 (1089)
.+++.
T Consensus 54 ----------------------------~~~~~----------------------------------------------- 58 (232)
T cd06437 54 ----------------------------EEYAA----------------------------------------------- 58 (232)
T ss_pred ----------------------------HHHhh-----------------------------------------------
Confidence 00000
Q ss_pred cccCCccCcEEEEeccCCCCCCCCCchhhhHHHHHhhccccCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCceEEEE
Q 001382 526 DIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYV 605 (1089)
Q Consensus 526 d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSa~~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~v~~V 605 (1089)
.-+++.++.+.+++| +||+|+|++++. .+++||+++|+|.+ ++|++|+++..++.|| ++++|
T Consensus 59 -----~~~~i~~~~~~~~~G----~k~~a~n~g~~~----a~~~~i~~~DaD~~-~~~~~l~~~~~~~~~~----~v~~v 120 (232)
T cd06437 59 -----QGVNIKHVRRADRTG----YKAGALAEGMKV----AKGEYVAIFDADFV-PPPDFLQKTPPYFADP----KLGFV 120 (232)
T ss_pred -----cCCceEEEECCCCCC----CchHHHHHHHHh----CCCCEEEEEcCCCC-CChHHHHHhhhhhcCC----CeEEE
Confidence 012477888877554 699999999985 58999999999998 7999999977788888 79999
Q ss_pred ecCccccCCCccc--ccc-chhhhhhhhhccccccCCCc-cccccccchhhhhhcCCCCCCCCCCCCCcCCCCCCccccc
Q 001382 606 QFPQRFDGIDRHD--RYS-NRNVVFFDINMKGLDGIQGP-IYVGTGCVFRRQALYGYDAPVKKKPPRKTCNCLPKWCCCC 681 (1089)
Q Consensus 606 Q~PQ~F~nid~~D--~y~-n~~~vFfdi~~~glDg~qgp-~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~c 681 (1089)
|.+..+.+.+.+- ++. -....++.....+....... ..+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------- 163 (232)
T cd06437 121 QTRWGHINANYSLLTRVQAMSLDYHFTIEQVARSSTGLFFNFN------------------------------------- 163 (232)
T ss_pred ecceeeEcCCCchhhHhhhhhHHhhhhHhHhhHhhcCCeEEec-------------------------------------
Confidence 9987665543221 100 00111222222221111111 112
Q ss_pred ccccccccccCCCccCCcchhhhhhhhhhhhhccccccccCchhHHHhhhcCCchHHHHHHhHhhCCCCCCCChhhHHHH
Q 001382 682 CRSRKKSKKGKSNKKNKDTSKQIYALENIEEGIEDNEKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGASTASLLNE 761 (1089)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~~~e 761 (1089)
|+...|+++++++.||++.
T Consensus 164 ---------------------------------------------------g~~~~~rr~~~~~vgg~~~---------- 182 (232)
T cd06437 164 ---------------------------------------------------GTAGVWRKECIEDAGGWNH---------- 182 (232)
T ss_pred ---------------------------------------------------cchhhhhHHHHHHhCCCCC----------
Confidence 3334455666678898765
Q ss_pred hHHhhcccccccCccccccCcccccccchHHHHHHHHhCCcEEEEecCCCCcccccCCCCHHHHHHhhheecchh
Q 001382 762 AIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGS 836 (1089)
Q Consensus 762 a~~v~sc~YE~~T~WG~evGW~ygSvTEDi~Tg~rLh~rGWrsvY~~p~~~Af~G~aP~tl~~~l~QR~RWA~G~ 836 (1089)
.++.||+++++||+.+||+++|+ |+..+ +...|+|+.++++||+||++|.
T Consensus 183 -----------------------~~~~ED~~l~~rl~~~G~~~~~~-~~~~v-~~~~~~~~~~~~~q~~rW~~g~ 232 (232)
T cd06437 183 -----------------------DTLTEDLDLSYRAQLKGWKFVYL-DDVVV-PAELPASMSAYRSQQHRWSKGP 232 (232)
T ss_pred -----------------------CcchhhHHHHHHHHHCCCeEEEe-cccee-eeeCCcCHHHHHHHHHHhccCC
Confidence 36789999999999999999999 65554 8999999999999999999984
No 24
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=99.90 E-value=5.8e-23 Score=218.97 Aligned_cols=233 Identities=23% Similarity=0.300 Sum_probs=164.4
Q ss_pred CceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCchhhhHHHHhhhHHHhhhhhhhhhhcCCCCCCchh
Q 001382 366 ADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRAPEW 445 (1089)
Q Consensus 366 P~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFCkk~~Iepr~Pe~ 445 (1089)
|.|.|+||++| |+ ..+..|+.|+++++||.+++.++|.|||.++-|.+-+.+
T Consensus 1 p~vsIiIp~~N---e~-~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~~~------------------------ 52 (241)
T cd06427 1 PVYTILVPLYK---EA-EVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAARA------------------------ 52 (241)
T ss_pred CeEEEEEecCC---cH-HHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHHHH------------------------
Confidence 67999999998 86 778999999999999988999999999987744332111
Q ss_pred hhhhccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCCcCccccCCCCCCCCCCCCCCcchhhhhccCCCCc
Q 001382 446 YFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVR 525 (1089)
Q Consensus 446 YFs~~~d~~~~~~~~~f~~err~~kreYee~k~rI~~l~~~~~~~p~~~w~m~dg~~w~~~~~rdHp~iiqv~l~~~g~~ 525 (1089)
+.. +.
T Consensus 53 -------------------------------------~~~-----~~--------------------------------- 57 (241)
T cd06427 53 -------------------------------------LRL-----PS--------------------------------- 57 (241)
T ss_pred -------------------------------------hcc-----CC---------------------------------
Confidence 000 00
Q ss_pred cccCCccCcEEEEeccCCCCCCCCCchhhhHHHHHhhccccCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCceEEEE
Q 001382 526 DIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYV 605 (1089)
Q Consensus 526 d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSa~~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~v~~V 605 (1089)
-.+++++.+.+ ...|++|+|++++. ++|+||+.+|+|.+ ..|++|.+++.+|.+. ..++++|
T Consensus 58 ------~~~i~~~~~~~-----~~G~~~a~n~g~~~----a~gd~i~~~DaD~~-~~~~~l~~~~~~~~~~--~~~v~~~ 119 (241)
T cd06427 58 ------IFRVVVVPPSQ-----PRTKPKACNYALAF----ARGEYVVIYDAEDA-PDPDQLKKAVAAFARL--DDKLACV 119 (241)
T ss_pred ------CeeEEEecCCC-----CCchHHHHHHHHHh----cCCCEEEEEcCCCC-CChHHHHHHHHHHHhc--CCCEEEE
Confidence 01244443322 23699999999985 68999999999998 7999999999988621 1289999
Q ss_pred ecCccccCCCccc---cccchhhhhhhhhccccccCCCccccccccchhhhhhcCCCCCCCCCCCCCcCCCCCCcccccc
Q 001382 606 QFPQRFDGIDRHD---RYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKPPRKTCNCLPKWCCCCC 682 (1089)
Q Consensus 606 Q~PQ~F~nid~~D---~y~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~c~ 682 (1089)
|.+..+++...+- .+......+|...+++....+.+..+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------- 161 (241)
T cd06427 120 QAPLNYYNARENWLTRMFALEYAAWFDYLLPGLARLGLPIPL-------------------------------------- 161 (241)
T ss_pred eCceEeeCCCccHHHHHHHHHHHHHHHHHHHHHHhcCCeeec--------------------------------------
Confidence 9988877543221 00111112222233333222222111
Q ss_pred cccccccccCCCccCCcchhhhhhhhhhhhhccccccccCchhHHHhhhcCCchHHHHHHhHhhCCCCCCCChhhHHHHh
Q 001382 683 RSRKKSKKGKSNKKNKDTSKQIYALENIEEGIEDNEKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGASTASLLNEA 762 (1089)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~~~ea 762 (1089)
.|+...|++++++++||+.+
T Consensus 162 -------------------------------------------------~g~~~~~rr~~~~~vgg~~~----------- 181 (241)
T cd06427 162 -------------------------------------------------GGTSNHFRTDVLRELGGWDP----------- 181 (241)
T ss_pred -------------------------------------------------CCchHHhhHHHHHHcCCCCc-----------
Confidence 13334455666678888754
Q ss_pred HHhhcccccccCccccccCcccccccchHHHHHHHHhCCcEEEEecCCCCcccccCCCCHHHHHHhhheecchhhHHHHh
Q 001382 763 IHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEILLS 842 (1089)
Q Consensus 763 ~~v~sc~YE~~T~WG~evGW~ygSvTEDi~Tg~rLh~rGWrsvY~~p~~~Af~G~aP~tl~~~l~QR~RWA~G~lQIl~s 842 (1089)
...+||++.++|++.+||+++|+ +.. .+...|+|+..+++||.||++|.+|++..
T Consensus 182 ----------------------~~~~eD~~l~~rl~~~G~r~~~~-~~~--~~~~~~~~~~~~~~q~~Rw~~g~~~~~~~ 236 (241)
T cd06427 182 ----------------------FNVTEDADLGLRLARAGYRTGVL-NST--TLEEANNALGNWIRQRSRWIKGYMQTWLV 236 (241)
T ss_pred ----------------------ccchhhHHHHHHHHHCCceEEEe-ccc--ccccCcHhHHHHHHHHHHHhccHHHHHHH
Confidence 36789999999999999999999 543 27899999999999999999999999964
No 25
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=99.90 E-value=9.1e-23 Score=214.90 Aligned_cols=173 Identities=27% Similarity=0.397 Sum_probs=120.6
Q ss_pred EEEEeccCCCCCCCCCchhhhHHHHHhhccccCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCceEEEEecCccccCC
Q 001382 535 LVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDGI 614 (1089)
Q Consensus 535 lvYvsRekrPg~~hh~KAGalNallrvSa~~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~v~~VQ~PQ~F~ni 614 (1089)
+.++..++. .+.||||+|.+++... .+++||+++|+|-. ..|++|.+.+.+|.+| +++.||+++.+.+.
T Consensus 58 i~~i~~~~~----~G~~~~a~n~g~~~a~--~~~d~i~~lD~D~~-~~~~~l~~l~~~~~~~----~~~~v~~~~~~~~~ 126 (236)
T cd06435 58 FRFFHVEPL----PGAKAGALNYALERTA--PDAEIIAVIDADYQ-VEPDWLKRLVPIFDDP----RVGFVQAPQDYRDG 126 (236)
T ss_pred EEEEEcCCC----CCCchHHHHHHHHhcC--CCCCEEEEEcCCCC-cCHHHHHHHHHHhcCC----CeeEEecCccccCC
Confidence 556666553 3469999999998642 46899999999986 7999999999998877 79999998765432
Q ss_pred Cccccccc----hhhhhhhhhccccccCCCccccccccchhhhhhcCCCCCCCCCCCCCcCCCCCCcccccccccccccc
Q 001382 615 DRHDRYSN----RNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKPPRKTCNCLPKWCCCCCRSRKKSKK 690 (1089)
Q Consensus 615 d~~D~y~n----~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~ 690 (1089)
.. ..+.- ....+|...++.....+.....
T Consensus 127 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------- 159 (236)
T cd06435 127 EE-SLFKRMCYAEYKGFFDIGMVSRNERNAIIQH---------------------------------------------- 159 (236)
T ss_pred Cc-cHHHHHHhHHHHHHHHHHhccccccCceEEe----------------------------------------------
Confidence 11 11100 0001111111111111112222
Q ss_pred cCCCccCCcchhhhhhhhhhhhhccccccccCchhHHHhhhcCCchHHHHHHhHhhCCCCCCCChhhHHHHhHHhhcccc
Q 001382 691 GKSNKKNKDTSKQIYALENIEEGIEDNEKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGASTASLLNEAIHVISCGY 770 (1089)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~~~ea~~v~sc~Y 770 (1089)
|+...|+++++.++||+++
T Consensus 160 ------------------------------------------g~~~~~rr~~~~~iGgf~~------------------- 178 (236)
T cd06435 160 ------------------------------------------GTMCLIRRSALDDVGGWDE------------------- 178 (236)
T ss_pred ------------------------------------------cceEEEEHHHHHHhCCCCC-------------------
Confidence 3333445556677898765
Q ss_pred cccCccccccCcccccccchHHHHHHHHhCCcEEEEecCCCCcccccCCCCHHHHHHhhheecchhhHHHHh
Q 001382 771 EDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEILLS 842 (1089)
Q Consensus 771 E~~T~WG~evGW~ygSvTEDi~Tg~rLh~rGWrsvY~~p~~~Af~G~aP~tl~~~l~QR~RWA~G~lQIl~s 842 (1089)
....||+++++|++.+||++.|+ |...+ +...|.++.++++||+||++|++|++.+
T Consensus 179 --------------~~~~eD~dl~~r~~~~G~~~~~~-~~~~~-~~~~~~~~~~~~~q~~rw~~g~~~~~~~ 234 (236)
T cd06435 179 --------------WCITEDSELGLRMHEAGYIGVYV-AQSYG-HGLIPDTFEAFKKQRFRWAYGAVQILKK 234 (236)
T ss_pred --------------ccccchHHHHHHHHHCCcEEEEc-chhhc-cCcCcccHHHHHHHHHHHhcchhhhhhc
Confidence 35689999999999999999999 54444 7899999999999999999999999863
No 26
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=99.87 E-value=6.7e-23 Score=214.48 Aligned_cols=224 Identities=29% Similarity=0.448 Sum_probs=135.1
Q ss_pred CceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCchhhhHHHHhhhHHHhhhhhhhhhhcCCCCCCchh
Q 001382 366 ADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRAPEW 445 (1089)
Q Consensus 366 P~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFCkk~~Iepr~Pe~ 445 (1089)
|.|.|+||++| |+. .+..||.|+++++|| ++.++|+||+..+-|.+.+
T Consensus 1 P~v~Vvip~~~---~~~-~l~~~l~sl~~~~~~--~~~v~vvd~~~~~~~~~~~-------------------------- 48 (228)
T PF13641_consen 1 PRVSVVIPAYN---EDD-VLRRCLESLLAQDYP--RLEVVVVDDGSDDETAEIL-------------------------- 48 (228)
T ss_dssp --EEEE--BSS----HH-HHHHHHHHHTTSHHH--TEEEEEEEE-SSS-GCTTH--------------------------
T ss_pred CEEEEEEEecC---CHH-HHHHHHHHHHcCCCC--CeEEEEEECCCChHHHHHH--------------------------
Confidence 78999999998 764 899999999999995 5999999999875221111
Q ss_pred hhhhccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCCcCccccCCCCCCCCCCCCCCcchhhhhccCCCCc
Q 001382 446 YFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVR 525 (1089)
Q Consensus 446 YFs~~~d~~~~~~~~~f~~err~~kreYee~k~rI~~l~~~~~~~p~~~w~m~dg~~w~~~~~rdHp~iiqv~l~~~g~~ 525 (1089)
++++++ +|+
T Consensus 49 -----------------------------------~~~~~~------------------------~~~------------ 57 (228)
T PF13641_consen 49 -----------------------------------RALAAR------------------------YPR------------ 57 (228)
T ss_dssp -----------------------------------HHHHHT------------------------TGG------------
T ss_pred -----------------------------------HHHHHH------------------------cCC------------
Confidence 111110 000
Q ss_pred cccCCccCcEEEEeccCCCCCCCCCchhhhHHHHHhhccccCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCceEEEE
Q 001382 526 DIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYV 605 (1089)
Q Consensus 526 d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSa~~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~v~~V 605 (1089)
-++.++.+.+.+| ...|++|+|.+++. ..+++|+++|+|.+ ++|++|++++.+|.+| +++.|
T Consensus 58 -------~~v~vi~~~~~~g--~~~k~~a~n~~~~~----~~~d~i~~lD~D~~-~~p~~l~~~~~~~~~~----~~~~v 119 (228)
T PF13641_consen 58 -------VRVRVIRRPRNPG--PGGKARALNEALAA----ARGDYILFLDDDTV-LDPDWLERLLAAFADP----GVGAV 119 (228)
T ss_dssp --------GEEEEE----HH--HHHHHHHHHHHHHH-------SEEEEE-SSEE-E-CHHHHHHHHHHHBS----S--EE
T ss_pred -------CceEEeecCCCCC--cchHHHHHHHHHHh----cCCCEEEEECCCcE-ECHHHHHHHHHHHHhC----CCCeE
Confidence 0256777655321 23699999999996 56999999999998 6999999999988888 89999
Q ss_pred ecCccccCCCccccccchhhhhhh----hhccccccCCCccccccccchhhhhhcCCCCCCCCCCCCCcCCCCCCccccc
Q 001382 606 QFPQRFDGIDRHDRYSNRNVVFFD----INMKGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKPPRKTCNCLPKWCCCC 681 (1089)
Q Consensus 606 Q~PQ~F~nid~~D~y~n~~~vFfd----i~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~c 681 (1089)
|.+..+++ +.+ .+..-...++. ....+....+.+.+.|++++|||+++
T Consensus 120 ~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~~-------------------------- 171 (228)
T PF13641_consen 120 GGPVFPDN-DRN-WLTRLQDLFFARWHLRFRSGRRALGVAFLSGSGMLFRRSAL-------------------------- 171 (228)
T ss_dssp EEEEEETT-CCC-EEEE-TT--S-EETTTS-TT-B----S-B--TEEEEEHHHH--------------------------
T ss_pred eeeEeecC-CCC-HHHHHHHHHHhhhhhhhhhhhcccceeeccCcEEEEEHHHH--------------------------
Confidence 98886664 222 12211212211 11233333444555667777766655
Q ss_pred ccccccccccCCCccCCcchhhhhhhhhhhhhccccccccCchhHHHhhhcCCchHHHHHHhHhhCCCCCCCChhhHHHH
Q 001382 682 CRSRKKSKKGKSNKKNKDTSKQIYALENIEEGIEDNEKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGASTASLLNE 761 (1089)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~~~e 761 (1089)
+++||+++
T Consensus 172 --------------------------------------------------------------~~~g~fd~---------- 179 (228)
T PF13641_consen 172 --------------------------------------------------------------EEVGGFDP---------- 179 (228)
T ss_dssp --------------------------------------------------------------HHH-S--S----------
T ss_pred --------------------------------------------------------------HHhCCCCC----------
Confidence 46777654
Q ss_pred hHHhhcccccccCccccccCcccccccchHHHHHHHHhCCcEEEEecCCCCcccccCCCCHHHHHHhhheecch
Q 001382 762 AIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALG 835 (1089)
Q Consensus 762 a~~v~sc~YE~~T~WG~evGW~ygSvTEDi~Tg~rLh~rGWrsvY~~p~~~Af~G~aP~tl~~~l~QR~RWA~G 835 (1089)
....||.++++++..+||+++|+ |...+ +...|.+++++++||.||++|
T Consensus 180 -----------------------~~~~eD~~l~~r~~~~G~~~~~~-~~~~v-~~~~~~~~~~~~~q~~RW~~g 228 (228)
T PF13641_consen 180 -----------------------FILGEDFDLCLRLRAAGWRIVYA-PDALV-YHEEPSSLKAFFKQRFRWSRG 228 (228)
T ss_dssp -----------------------SSSSHHHHHHHHHHHTT--EEEE-EEEEE-EE--SSSTHHHHHHHHHHH--
T ss_pred -----------------------CCcccHHHHHHHHHHCCCcEEEE-CCcEE-EEeCCCCHHHHHHHHhccCcC
Confidence 46779999999999999999999 54444 899999999999999999987
No 27
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=99.84 E-value=6.1e-19 Score=214.33 Aligned_cols=171 Identities=19% Similarity=0.265 Sum_probs=125.4
Q ss_pred CCCchhhhHHHHHhh---ccccCCCE--EEEecCCCCCCchHHHHHHHHhhcCCCCCceEEEEecCcc-ccCCCcc---c
Q 001382 548 HHKKAGAMNALIRVS---AVISNAPY--LLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQR-FDGIDRH---D 618 (1089)
Q Consensus 548 hh~KAGalNallrvS---a~~tngp~--Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~v~~VQ~PQ~-F~nid~~---D 618 (1089)
...||.|||.++... .-.+.+.| |+++|||.+ ++|++|+. |-++++. + -+||.|-. ..|...+ .
T Consensus 139 p~gKa~ALN~~l~~~~~~e~~~~~~fa~vvi~DAEd~-~~P~~L~~-~~~~~~~----~-~~iQ~pV~~~~~~~~~~l~~ 211 (703)
T PRK15489 139 PTCKADCLNWIIQAIFRYEAGHGIEFAGVILHDSEDV-LHPLELKY-FNYLLPR----K-DLVQLPVLSLERKWYEWVAG 211 (703)
T ss_pred CCCHHHHHHHHHHHHHhhhhhccCccceEEEEcCCCC-CChhHHHH-HHhhcCC----c-ceeeeeeccCCCccccHHHH
Confidence 347999999988752 11234455 999999997 89999985 5666643 1 36998732 1111111 2
Q ss_pred cccchhhhhhhhhccccccCCCccc-cccccchhhhhhcCCCCCCCCCCCCCcCCCCCCcccccccccccccccCCCccC
Q 001382 619 RYSNRNVVFFDINMKGLDGIQGPIY-VGTGCVFRRQALYGYDAPVKKKPPRKTCNCLPKWCCCCCRSRKKSKKGKSNKKN 697 (1089)
Q Consensus 619 ~y~n~~~vFfdi~~~glDg~qgp~y-vGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~ 697 (1089)
-|..+....|+..++++..+.|++. -|||++|||.||-
T Consensus 212 ~~~~Efa~~~~~~l~~r~~l~~~ipl~Gv~~~frr~aL~----------------------------------------- 250 (703)
T PRK15489 212 TYMDEFAEWHQKDLVVRESLTGTVPSAGVGTCFSRRALL----------------------------------------- 250 (703)
T ss_pred HHHHHHHHHhhhHHHHHHHcCCceeccCcceeeeHHHHH-----------------------------------------
Confidence 3667777888888999998988766 5689999999882
Q ss_pred CcchhhhhhhhhhhhhccccccccCchhHHHhhhcCCchHHHHHHhHhhCCCCCCCChhhHHHHhHHhhcccccccCccc
Q 001382 698 KDTSKQIYALENIEEGIEDNEKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGASTASLLNEAIHVISCGYEDKTDWG 777 (1089)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~~~ea~~v~sc~YE~~T~WG 777 (1089)
.+.+.||..
T Consensus 251 --------------------------------------------~l~~~gg~~--------------------------- 259 (703)
T PRK15489 251 --------------------------------------------ALMKERGNQ--------------------------- 259 (703)
T ss_pred --------------------------------------------HHHHhcCCC---------------------------
Confidence 012334422
Q ss_pred cccCcccccccchHHHHHHHHhCCcEEEEecC---------------------CCCcccccCCCCHHHHHHhhheecchh
Q 001382 778 KEIGWIYGSVTEDILTGFKMHCHGWRSVYCIP---------------------KRPAFKGSAPINLSDRLHQVLRWALGS 836 (1089)
Q Consensus 778 ~evGW~ygSvTEDi~Tg~rLh~rGWrsvY~~p---------------------~~~Af~G~aP~tl~~~l~QR~RWA~G~ 836 (1089)
+|+.+|+|||+++|+||+.+|||+.|+.- ...+.++..|.|+.+.++||.||..|-
T Consensus 260 ---~~n~~sLTED~Dlg~RL~~~G~r~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~tre~fP~~~~a~~rQk~RW~~Gi 336 (703)
T PRK15489 260 ---PFNTSSLTEDYDFSFRLAELGMQEIFVRFPVQFRVRRTSWFGPRRERTREMLLCVREYFPDTFRTAYRQKARWVLGI 336 (703)
T ss_pred ---CCCCCCchHhHHHHHHHHHCCCceEEEEEeccccccccccccccccccccCceeehhhCcHHHHHHHHHHHHHHhHH
Confidence 47778999999999999999999999321 124557889999999999999999998
Q ss_pred h-HHH
Q 001382 837 V-EIL 840 (1089)
Q Consensus 837 l-QIl 840 (1089)
. |-.
T Consensus 337 ~~q~~ 341 (703)
T PRK15489 337 AFQGW 341 (703)
T ss_pred HHhhH
Confidence 7 765
No 28
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=99.83 E-value=9.9e-21 Score=203.62 Aligned_cols=52 Identities=21% Similarity=0.270 Sum_probs=46.9
Q ss_pred ccccchHHHHHHHHhCCcEEEE--ecCCCCcccccCCCCHHHHHHhhheecchhhH
Q 001382 785 GSVTEDILTGFKMHCHGWRSVY--CIPKRPAFKGSAPINLSDRLHQVLRWALGSVE 838 (1089)
Q Consensus 785 gSvTEDi~Tg~rLh~rGWrsvY--~~p~~~Af~G~aP~tl~~~l~QR~RWA~G~lQ 838 (1089)
.+++||.+++++|..+||++.| + |...+ +.++|+|+.++++||+||++|++.
T Consensus 190 ~~~~ED~~l~~~l~~~G~~~~~~~~-~~a~~-~~~~p~s~~~~~~QR~RW~~g~~~ 243 (244)
T cd04190 190 LDLGEDRILCTLLLKAGPKRKYLYV-PGAVA-ETDVPETFVELLSQRRRWINSTIA 243 (244)
T ss_pred HhHhcccceeHHHhccCCccEEEEe-cccEE-EEECCCCHHHHHHHhHhhhccccc
Confidence 4789999999999999999999 7 55554 899999999999999999999863
No 29
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=99.83 E-value=5.4e-19 Score=202.07 Aligned_cols=235 Identities=17% Similarity=0.220 Sum_probs=156.0
Q ss_pred CCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCchhhhHHHHhhhHHHhhhhhhhhhhcCCCCCC
Q 001382 363 SDLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRA 442 (1089)
Q Consensus 363 ~~lP~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFCkk~~Iepr~ 442 (1089)
...|.|.|+||++| |.+ .+.+++.|++++|||. +.++|.||+.++-|.+-+.
T Consensus 38 ~~~p~VSViiP~~n---ee~-~l~~~L~Sl~~q~Yp~--~EIivvdd~s~D~t~~iv~---------------------- 89 (373)
T TIGR03472 38 RAWPPVSVLKPLHG---DEP-ELYENLASFCRQDYPG--FQMLFGVQDPDDPALAVVR---------------------- 89 (373)
T ss_pred CCCCCeEEEEECCC---CCh-hHHHHHHHHHhcCCCC--eEEEEEeCCCCCcHHHHHH----------------------
Confidence 34899999999999 875 5679999999999995 8899999987763322111
Q ss_pred chhhhhhccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCCcCccccCCCCCCCCCCCCCCcchhhhhccCC
Q 001382 443 PEWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQN 522 (1089)
Q Consensus 443 Pe~YFs~~~d~~~~~~~~~f~~err~~kreYee~k~rI~~l~~~~~~~p~~~w~m~dg~~w~~~~~rdHp~iiqv~l~~~ 522 (1089)
++.+ +||.
T Consensus 90 ---------------------------------------~~~~------------------------~~p~--------- 97 (373)
T TIGR03472 90 ---------------------------------------RLRA------------------------DFPD--------- 97 (373)
T ss_pred ---------------------------------------HHHH------------------------hCCC---------
Confidence 1110 0110
Q ss_pred CCccccCCccCcEEEEeccCCCCCCCCCchhhhHHHHHhhccccCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCceE
Q 001382 523 GVRDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKI 602 (1089)
Q Consensus 523 g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSa~~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~v 602 (1089)
.++.++.+.++. ..+.|++|+|++++. +.+++|+++|+|.+ +.|++|++.+..|.|| ++
T Consensus 98 ----------~~i~~v~~~~~~--G~~~K~~~l~~~~~~----a~ge~i~~~DaD~~-~~p~~L~~lv~~~~~~----~v 156 (373)
T TIGR03472 98 ----------ADIDLVIDARRH--GPNRKVSNLINMLPH----ARHDILVIADSDIS-VGPDYLRQVVAPLADP----DV 156 (373)
T ss_pred ----------CceEEEECCCCC--CCChHHHHHHHHHHh----ccCCEEEEECCCCC-cChhHHHHHHHHhcCC----Cc
Confidence 135566444432 245799999998874 68999999999997 7999999999999998 78
Q ss_pred EEEecCccccCCCccccccchhhhhhhhhccccccCCCccccccccchhhhhhcCCCCCCCCCCCCCcCCCCCCcccccc
Q 001382 603 CYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKPPRKTCNCLPKWCCCCC 682 (1089)
Q Consensus 603 ~~VQ~PQ~F~nid~~D~y~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~c~ 682 (1089)
+.|+.+.+.. +... +.++.... ..+.. ++-+ .... ...|.
T Consensus 157 ~~V~~~~~~~--~~~~-~~~~l~~~------~~~~~---~~~~--~~~~--~~~~~------------------------ 196 (373)
T TIGR03472 157 GLVTCLYRGR--PVPG-FWSRLGAM------GINHN---FLPS--VMVA--RALGR------------------------ 196 (373)
T ss_pred ceEeccccCC--CCCC-HHHHHHHH------Hhhhh---hhHH--HHHH--HhccC------------------------
Confidence 9999864322 1111 11111000 00000 0000 0000 00000
Q ss_pred cccccccccCCCccCCcchhhhhhhhhhhhhccccccccCchhHHHhhhcCCchHHHHHHhHhhCCCCCCCChhhHHHHh
Q 001382 683 RSRKKSKKGKSNKKNKDTSKQIYALENIEEGIEDNEKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGASTASLLNEA 762 (1089)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~~~ea 762 (1089)
...-.|++..|++++++++||++..
T Consensus 197 ---------------------------------------------~~~~~G~~~a~RR~~l~~iGGf~~~---------- 221 (373)
T TIGR03472 197 ---------------------------------------------ARFCFGATMALRRATLEAIGGLAAL---------- 221 (373)
T ss_pred ---------------------------------------------CccccChhhheeHHHHHHcCChHHh----------
Confidence 0001366667778888899998641
Q ss_pred HHhhcccccccCccccccCcccccccchHHHHHHHHhCCcEEEEecCCCCcccccCCCCHHHHHHhhheecchh
Q 001382 763 IHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGS 836 (1089)
Q Consensus 763 ~~v~sc~YE~~T~WG~evGW~ygSvTEDi~Tg~rLh~rGWrsvY~~p~~~Af~G~aP~tl~~~l~QR~RWA~G~ 836 (1089)
..+++||++++.++..+||++.|. |.... ....|+|++++++||.||++..
T Consensus 222 ---------------------~~~~~ED~~l~~~i~~~G~~v~~~-~~~v~-~~~~~~s~~~~~~q~~RW~r~~ 272 (373)
T TIGR03472 222 ---------------------AHHLADDYWLGELVRALGLRVVLA-PVVVD-TDVHETSFATLLAHELRWSRTI 272 (373)
T ss_pred ---------------------cccchHHHHHHHHHHHcCCeEEec-chhhh-cCCCccCHHHHHHHHHHHHhhh
Confidence 146789999999999999999998 44443 6788899999999999997543
No 30
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.80 E-value=5.8e-19 Score=183.23 Aligned_cols=226 Identities=16% Similarity=0.196 Sum_probs=150.9
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCchhhhHHHHhhhHHHhhhhhhhhhhcCCCCCCchhhhhh
Q 001382 370 IFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRAPEWYFAQ 449 (1089)
Q Consensus 370 vfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFCkk~~Iepr~Pe~YFs~ 449 (1089)
|+|||+| |+ ..+..||.|++..+||.+++.|+|.|||.+.-|.+-+.
T Consensus 1 viip~~n---~~-~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~----------------------------- 47 (229)
T cd04192 1 VVIAARN---EA-ENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILE----------------------------- 47 (229)
T ss_pred CEEEecC---cH-HHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHHHH-----------------------------
Confidence 6899998 75 78999999999999999889999999998763322110
Q ss_pred ccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCCcCccccCCCCCCCCCCCCCCcchhhhhccCCCCccccC
Q 001382 450 KLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVRDIEG 529 (1089)
Q Consensus 450 ~~d~~~~~~~~~f~~err~~kreYee~k~rI~~l~~~~~~~p~~~w~m~dg~~w~~~~~rdHp~iiqv~l~~~g~~d~~~ 529 (1089)
|. +.
T Consensus 48 -----------------------~~--------~~--------------------------------------------- 51 (229)
T cd04192 48 -----------------------FA--------AA--------------------------------------------- 51 (229)
T ss_pred -----------------------HH--------Hh---------------------------------------------
Confidence 00 00
Q ss_pred CccCcEEEEeccCCCCCCCCCchhhhHHHHHhhccccCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCceEEEEecCc
Q 001382 530 NLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQ 609 (1089)
Q Consensus 530 ~~lP~lvYvsRekrPg~~hh~KAGalNallrvSa~~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~v~~VQ~PQ 609 (1089)
...|++.++.++. + ....|+.|+|.++.. ++++||+++|+|.+ +.|++|.+.+..|.++ ..+.|+.++
T Consensus 52 ~~~~~v~~~~~~~-~--~~~g~~~a~n~g~~~----~~~d~i~~~D~D~~-~~~~~l~~l~~~~~~~----~~~~v~~~~ 119 (229)
T cd04192 52 KPNFQLKILNNSR-V--SISGKKNALTTAIKA----AKGDWIVTTDADCV-VPSNWLLTFVAFIQKE----QIGLVAGPV 119 (229)
T ss_pred CCCcceEEeeccC-c--ccchhHHHHHHHHHH----hcCCEEEEECCCcc-cCHHHHHHHHHHhhcC----CCcEEeeee
Confidence 0012355555543 1 235799999999985 68999999999997 7899999999977665 577888888
Q ss_pred cccCCCcc-ccccchhhhhhhhhccccccCCCc-cccccccchhhhhhcCCCCCCCCCCCCCcCCCCCCccccccccccc
Q 001382 610 RFDGIDRH-DRYSNRNVVFFDINMKGLDGIQGP-IYVGTGCVFRRQALYGYDAPVKKKPPRKTCNCLPKWCCCCCRSRKK 687 (1089)
Q Consensus 610 ~F~nid~~-D~y~n~~~vFfdi~~~glDg~qgp-~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~c~~~~~~ 687 (1089)
.+...+.. ..+......+......+..+++.+ ...
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------- 156 (229)
T cd04192 120 IYFKGKSLLAKFQRLDWLSLLGLIAGSFGLGKPFMCN------------------------------------------- 156 (229)
T ss_pred eecCCccHHHHHHHHHHHHHHHHHhhHHHhcCccccc-------------------------------------------
Confidence 77522111 111110000111111111111111 112
Q ss_pred ccccCCCccCCcchhhhhhhhhhhhhccccccccCchhHHHhhhcCCchHHHHHHhHhhCCCCCCCChhhHHHHhHHhhc
Q 001382 688 SKKGKSNKKNKDTSKQIYALENIEEGIEDNEKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGASTASLLNEAIHVIS 767 (1089)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~~~ea~~v~s 767 (1089)
|.+..|++++++++||+++.
T Consensus 157 ---------------------------------------------g~~~~~rr~~~~~~ggf~~~--------------- 176 (229)
T cd04192 157 ---------------------------------------------GANMAYRKEAFFEVGGFEGN--------------- 176 (229)
T ss_pred ---------------------------------------------cceEEEEHHHHHHhcCCccc---------------
Confidence 33334455566788998651
Q ss_pred ccccccCccccccCcccccccchHHHHHHHHhCCc-EEEEecCCCCcccccCCCCHHHHHHhhheecch
Q 001382 768 CGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGW-RSVYCIPKRPAFKGSAPINLSDRLHQVLRWALG 835 (1089)
Q Consensus 768 c~YE~~T~WG~evGW~ygSvTEDi~Tg~rLh~rGW-rsvY~~p~~~Af~G~aP~tl~~~l~QR~RWA~G 835 (1089)
....+||.+..+++..+|| ++.|+.......+...|.++.++++||+||++|
T Consensus 177 ----------------~~~~~eD~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~Rw~~g 229 (229)
T cd04192 177 ----------------DHIASGDDELLLAKVASKYPKVAYLKNPEALVTTQPVTSWKELLNQRKRWASK 229 (229)
T ss_pred ----------------cccccCCHHHHHHHHHhCCCCEEEeeCcchheecCCchhHHHHHHHHHHhhcC
Confidence 1366899999999999999 998874222333789999999999999999987
No 31
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=99.79 E-value=1.2e-18 Score=180.24 Aligned_cols=123 Identities=22% Similarity=0.272 Sum_probs=100.4
Q ss_pred CCchhhhHHHHHhhccccCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCceEEEEecCccccCCCccccccchhhhhh
Q 001382 549 HKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDGIDRHDRYSNRNVVFF 628 (1089)
Q Consensus 549 h~KAGalNallrvSa~~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~v~~VQ~PQ~F~nid~~D~y~n~~~vFf 628 (1089)
..|++|+|.+++. .+++||+++|+|.. ..|++|.+.+..+.+| +++.|+..
T Consensus 72 ~~~~~~~n~g~~~----a~~d~i~~~D~D~~-~~~~~l~~l~~~~~~~----~~~~v~~~-------------------- 122 (196)
T cd02520 72 NPKVNNLIKGYEE----ARYDILVISDSDIS-VPPDYLRRMVAPLMDP----GVGLVTCL-------------------- 122 (196)
T ss_pred CHhHHHHHHHHHh----CCCCEEEEECCCce-EChhHHHHHHHHhhCC----CCCeEEee--------------------
Confidence 3689999999985 68999999999997 6999999999988888 57777764
Q ss_pred hhhccccccCCCccccccccchhhhhhcCCCCCCCCCCCCCcCCCCCCcccccccccccccccCCCccCCcchhhhhhhh
Q 001382 629 DINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKPPRKTCNCLPKWCCCCCRSRKKSKKGKSNKKNKDTSKQIYALE 708 (1089)
Q Consensus 629 di~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~ 708 (1089)
...|+++++||+++
T Consensus 123 -------------~~~g~~~~~r~~~~----------------------------------------------------- 136 (196)
T cd02520 123 -------------CAFGKSMALRREVL----------------------------------------------------- 136 (196)
T ss_pred -------------cccCceeeeEHHHH-----------------------------------------------------
Confidence 34577788877766
Q ss_pred hhhhhccccccccCchhHHHhhhcCCchHHHHHHhHhhCCCCCCCChhhHHHHhHHhhcccccccCccccccCccccccc
Q 001382 709 NIEEGIEDNEKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGASTASLLNEAIHVISCGYEDKTDWGKEIGWIYGSVT 788 (1089)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~~~ea~~v~sc~YE~~T~WG~evGW~ygSvT 788 (1089)
+++||++.. ...+.
T Consensus 137 -----------------------------------~~~ggf~~~-------------------------------~~~~~ 150 (196)
T cd02520 137 -----------------------------------DAIGGFEAF-------------------------------ADYLA 150 (196)
T ss_pred -----------------------------------HhccChHHH-------------------------------hHHHH
Confidence 345665420 12457
Q ss_pred chHHHHHHHHhCCcEEEEecCCCCcccccCCCCHHHHHHhhheecc
Q 001382 789 EDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWAL 834 (1089)
Q Consensus 789 EDi~Tg~rLh~rGWrsvY~~p~~~Af~G~aP~tl~~~l~QR~RWA~ 834 (1089)
||++.++++..+||+++|+ |...+ +...|.+++++++||.||++
T Consensus 151 eD~~l~~rl~~~G~~i~~~-~~~~~-~~~~~~~~~~~~~q~~rw~~ 194 (196)
T cd02520 151 EDYFLGKLIWRLGYRVVLS-PYVVM-QPLGSTSLASFWRRQLRWSR 194 (196)
T ss_pred HHHHHHHHHHHcCCeEEEc-chhee-ccCCcccHHHHHHHHHHHhc
Confidence 9999999999999999999 55444 78999999999999999986
No 32
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=99.76 E-value=1.4e-17 Score=174.85 Aligned_cols=58 Identities=26% Similarity=0.169 Sum_probs=51.6
Q ss_pred CCchhhhHHHHHhhccccCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCceEEEEecCccccCCC
Q 001382 549 HKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDGID 615 (1089)
Q Consensus 549 h~KAGalNallrvSa~~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~v~~VQ~PQ~F~nid 615 (1089)
..|++|+|.+++. +.++||+++|+|.+ +.|++|++++..|.|| +++.|+..+.+.+.+
T Consensus 63 ~g~~~a~n~g~~~----a~~d~v~~lD~D~~-~~~~~l~~l~~~~~~~----~v~~v~~~~~~~~~~ 120 (235)
T cd06434 63 PGKRRALAEGIRH----VTTDIVVLLDSDTV-WPPNALPEMLKPFEDP----KVGGVGTNQRILRPR 120 (235)
T ss_pred CChHHHHHHHHHH----hCCCEEEEECCCce-eChhHHHHHHHhccCC----CEeEEcCceEeecCc
Confidence 4599999999985 58999999999998 7999999999988888 899999998887664
No 33
>COG2943 MdoH Membrane glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.74 E-value=8.5e-15 Score=168.10 Aligned_cols=209 Identities=22% Similarity=0.326 Sum_probs=153.3
Q ss_pred cEEEEeccCCCCCCCCCchhhhHHHHHhhccccCCCEEEEecCCCCCCchHHHHHHHHhh-cCCCCCceEEEEecCcccc
Q 001382 534 RLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFM-MDPTSGKKICYVQFPQRFD 612 (1089)
Q Consensus 534 ~lvYvsRekrPg~~hh~KAGalNallrvSa~~tngp~Il~lDcD~~~~~p~~Lr~amcff-~Dp~~g~~v~~VQ~PQ~F~ 612 (1089)
++.|-.|.+ |-..||||+....|--| +...++++||||.+ -..+.+-+.+-.| .+| +.|.+||--.--
T Consensus 213 ~ifYRrRr~----n~~RKaGNIaDfcrRwG--~~Y~~MlVLDADSv-Mtgd~lvrLv~~ME~~P----~aGlIQt~P~~~ 281 (736)
T COG2943 213 NIFYRRRRR----NVKRKAGNIADFCRRWG--SAYSYMLVLDADSV-MTGDCLVRLVRLMEANP----DAGLIQTSPKAS 281 (736)
T ss_pred ceeeehHhh----hhcccccCHHHHHHHhC--cccceEEEeecccc-cCchHHHHHHHHHhhCC----CCceeecchhhc
Confidence 366766666 56689999999999877 77899999999998 5888888888877 578 799999943333
Q ss_pred CCCccccccc----hhhhhhhhhccccccCCC--ccccccccchhhhhhcCCCCCCCCCCCCCcCCCCCCcccccccccc
Q 001382 613 GIDRHDRYSN----RNVVFFDINMKGLDGIQG--PIYVGTGCVFRRQALYGYDAPVKKKPPRKTCNCLPKWCCCCCRSRK 686 (1089)
Q Consensus 613 nid~~D~y~n----~~~vFfdi~~~glDg~qg--p~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~c~~~~~ 686 (1089)
|.| ..|+- ..+|+--+.--|+.-||+ .-|-|.|++.|-+|+-. -| |...
T Consensus 282 gg~--TL~AR~qQFatrvYGpl~~~GLawW~~~Es~yWGHNAIIRt~aF~~----------------------hc-gLp~ 336 (736)
T COG2943 282 GGD--TLYARCQQFATRVYGPLFTAGLAWWQLGESHYWGHNAIIRTKAFIE----------------------HC-GLPP 336 (736)
T ss_pred Ccc--hHHHHHHHHHHHHhchHHhhhhHHHhccccccccccceeechhhHH----------------------hc-CCCC
Confidence 322 22321 234555667778888887 57889999998888731 01 1000
Q ss_pred cccccCCCccCCcchhhhhhhhhhhhhccccccccCchhHHHhhhcCCchHHHHHHhHhhCCCCCCCChhhHHHHhHHhh
Q 001382 687 KSKKGKSNKKNKDTSKQIYALENIEEGIEDNEKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGASTASLLNEAIHVI 766 (1089)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~~~ea~~v~ 766 (1089)
- . + . ...||
T Consensus 337 L-----------------------p----G-----------------~---------~pFgG------------------ 345 (736)
T COG2943 337 L-----------------------P----G-----------------R---------GPFGG------------------ 345 (736)
T ss_pred C-----------------------C----C-----------------C---------CCCCc------------------
Confidence 0 0 0 0 01233
Q ss_pred cccccccCccccccCcccccccchHHHHHHHHhCCcEEEEecCCCCcccccCCCCHHHHHHhhheecchhhHHHHhhccc
Q 001382 767 SCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEILLSRHCP 846 (1089)
Q Consensus 767 sc~YE~~T~WG~evGW~ygSvTEDi~Tg~rLh~rGWrsvY~~p~~~Af~G~aP~tl~~~l~QR~RWA~G~lQIl~sk~~P 846 (1089)
..++.|+.-+-.|.+.||.+.-. +++...|++.|.|+.|.++.-+||++|++|-+ +
T Consensus 346 ------------------~ilSHDfvEAALmRRaGW~v~ia-~dL~GSyEE~PpnLlD~l~RDRRWC~GNLqh~-----r 401 (736)
T COG2943 346 ------------------HILSHDFVEAALMRRAGWGVWIA-YDLDGSYEELPPNLLDELKRDRRWCHGNLQHF-----R 401 (736)
T ss_pred ------------------cccchHHHHHHHHhhcCceEEEe-ccCCCchhhCCchHHHHHhhhhHhhhcchhhc-----e
Confidence 35678999999999999965444 77888899999999999999999999999965 3
Q ss_pred cccccCCCCCcccchhhhhhhhhHhHHHH
Q 001382 847 IWYGYGCGLKPLERFSYINSVVYPITSIP 875 (1089)
Q Consensus 847 l~~g~~k~L~~~QRL~Yl~~~ly~l~sl~ 875 (1089)
++. .++|.+..|+.++.+++.|+++-.
T Consensus 402 l~~--~~GlHwvsR~h~~tGVmsYlsaPl 428 (736)
T COG2943 402 LFL--VKGLHWVSRAHFLTGVMSYLSAPL 428 (736)
T ss_pred eec--cCCccHHHHHHHHHHHHHHHhhHH
Confidence 542 689999999999998887776533
No 34
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=99.73 E-value=7.7e-17 Score=171.52 Aligned_cols=127 Identities=24% Similarity=0.331 Sum_probs=97.2
Q ss_pred CCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCchhhhHHHHhhhHHHhhhhhhhhhhcCCCCC
Q 001382 362 PSDLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPR 441 (1089)
Q Consensus 362 ~~~lP~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFCkk~~Iepr 441 (1089)
.+..|.|.|+|||+| |+ ..+..++.|+++.+||.+++.++|+|||+++-|.+.+
T Consensus 25 ~~~~~~isVvip~~n---~~-~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~---------------------- 78 (251)
T cd06439 25 PAYLPTVTIIIPAYN---EE-AVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIA---------------------- 78 (251)
T ss_pred CCCCCEEEEEEecCC---cH-HHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHH----------------------
Confidence 456889999999998 65 6789999999999999888999999999886332211
Q ss_pred CchhhhhhccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCCcCccccCCCCCCCCCCCCCCcchhhhhccC
Q 001382 442 APEWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQ 521 (1089)
Q Consensus 442 ~Pe~YFs~~~d~~~~~~~~~f~~err~~kreYee~k~rI~~l~~~~~~~p~~~w~m~dg~~w~~~~~rdHp~iiqv~l~~ 521 (1089)
+++.+
T Consensus 79 -----------------------------~~~~~---------------------------------------------- 83 (251)
T cd06439 79 -----------------------------REYAD---------------------------------------------- 83 (251)
T ss_pred -----------------------------HHHhh----------------------------------------------
Confidence 01100
Q ss_pred CCCccccCCccCcEEEEeccCCCCCCCCCchhhhHHHHHhhccccCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCce
Q 001382 522 NGVRDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKK 601 (1089)
Q Consensus 522 ~g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSa~~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~ 601 (1089)
. ++.++..+++ ..|++|+|.+++. .++++|+++|+|.+ +.|++|++.+..|.++ +
T Consensus 84 ---------~--~v~~i~~~~~-----~g~~~a~n~gi~~----a~~d~i~~lD~D~~-~~~~~l~~l~~~~~~~----~ 138 (251)
T cd06439 84 ---------K--GVKLLRFPER-----RGKAAALNRALAL----ATGEIVVFTDANAL-LDPDALRLLVRHFADP----S 138 (251)
T ss_pred ---------C--cEEEEEcCCC-----CChHHHHHHHHHH----cCCCEEEEEccccC-cCHHHHHHHHHHhcCC----C
Confidence 0 1444444432 3599999999985 57899999999998 5799999999998877 6
Q ss_pred EEEEecCccccCC
Q 001382 602 ICYVQFPQRFDGI 614 (1089)
Q Consensus 602 v~~VQ~PQ~F~ni 614 (1089)
+++|+......+.
T Consensus 139 ~~~v~~~~~~~~~ 151 (251)
T cd06439 139 VGAVSGELVIVDG 151 (251)
T ss_pred ccEEEeEEEecCC
Confidence 8888887665443
No 35
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=99.72 E-value=8e-16 Score=176.88 Aligned_cols=133 Identities=22% Similarity=0.205 Sum_probs=93.2
Q ss_pred CCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCchhhhHHHHhhhHHHhhhhhhhhhhcCCCCC
Q 001382 362 PSDLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPR 441 (1089)
Q Consensus 362 ~~~lP~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFCkk~~Iepr 441 (1089)
+...|+|.|+||++| |. ..+..++-|++++|||. ++.|+|.|||+++-|.+-+.+
T Consensus 36 ~~~~p~VSVIIpa~N---e~-~~L~~~L~sL~~q~yp~-~~eIIVVDd~StD~T~~i~~~-------------------- 90 (384)
T TIGR03469 36 PEAWPAVVAVVPARN---EA-DVIGECVTSLLEQDYPG-KLHVILVDDHSTDGTADIARA-------------------- 90 (384)
T ss_pred CCCCCCEEEEEecCC---cH-hHHHHHHHHHHhCCCCC-ceEEEEEeCCCCCcHHHHHHH--------------------
Confidence 457899999999999 76 67889999999999995 589999999998744332111
Q ss_pred CchhhhhhccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCCcCccccCCCCCCCCCCCCCCcchhhhhccC
Q 001382 442 APEWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQ 521 (1089)
Q Consensus 442 ~Pe~YFs~~~d~~~~~~~~~f~~err~~kreYee~k~rI~~l~~~~~~~p~~~w~m~dg~~w~~~~~rdHp~iiqv~l~~ 521 (1089)
+.+ +.|.
T Consensus 91 -----------------------------------------~~~---~~~~----------------------------- 97 (384)
T TIGR03469 91 -----------------------------------------AAR---AYGR----------------------------- 97 (384)
T ss_pred -----------------------------------------HHH---hcCC-----------------------------
Confidence 000 0000
Q ss_pred CCCccccCCccCcEEEEeccCCCCCCCCCchhhhHHHHHhhcccc-CCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCc
Q 001382 522 NGVRDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVIS-NAPYLLNVDCDHYINNSKALREAMCFMMDPTSGK 600 (1089)
Q Consensus 522 ~g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSa~~t-ngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~ 600 (1089)
-+++.++..+.+|. .-..|+.|+|.+++.+.... .+++|+.+|+|.. ++|++|++++..+.++
T Consensus 98 ----------~~~i~vi~~~~~~~-g~~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~~-~~p~~l~~lv~~~~~~---- 161 (384)
T TIGR03469 98 ----------GDRLTVVSGQPLPP-GWSGKLWAVSQGIAAARTLAPPADYLLLTDADIA-HGPDNLARLVARARAE---- 161 (384)
T ss_pred ----------CCcEEEecCCCCCC-CCcchHHHHHHHHHHHhccCCCCCEEEEECCCCC-CChhHHHHHHHHHHhC----
Confidence 01344554433332 34579999999998642111 1899999999997 7999999999998876
Q ss_pred eEEEEecC
Q 001382 601 KICYVQFP 608 (1089)
Q Consensus 601 ~v~~VQ~P 608 (1089)
++++|...
T Consensus 162 ~~~~vs~~ 169 (384)
T TIGR03469 162 GLDLVSLM 169 (384)
T ss_pred CCCEEEec
Confidence 34555443
No 36
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=99.65 E-value=5.6e-15 Score=155.42 Aligned_cols=54 Identities=15% Similarity=0.151 Sum_probs=47.8
Q ss_pred ccchHHHHHHHHhCCcEEEEecCCCCcccccCCCCHHHHHHhhheecchhhHHHHh
Q 001382 787 VTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEILLS 842 (1089)
Q Consensus 787 vTEDi~Tg~rLh~rGWrsvY~~p~~~Af~G~aP~tl~~~l~QR~RWA~G~lQIl~s 842 (1089)
..||.+.+++++.+|+++.|+ |...+ .-..|.+++.+++|+.||+.|..|++..
T Consensus 180 ~~eD~~l~~r~~~~G~~~~~~-~~~~~-~~~~~~s~~~~~~~~~r~~~~~~~~~~~ 233 (249)
T cd02525 180 RNEDAELNYRLRKAGYKIWLS-PDIRV-YYYPRSTLKKLARQYFRYGKWRARTLRK 233 (249)
T ss_pred ccchhHHHHHHHHcCcEEEEc-CCeEE-EEcCCCCHHHHHHHHHHHhhhhHHHHHh
Confidence 469999999999999999999 54444 6778899999999999999999999864
No 37
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=99.64 E-value=1.4e-15 Score=156.48 Aligned_cols=138 Identities=30% Similarity=0.441 Sum_probs=102.3
Q ss_pred EEEEecCCCCCCchHHHHHHHHhhcCCCCCceEEEEecCccccCCCccccccchhhhhhhhhc----cccccCCC-cccc
Q 001382 570 YLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINM----KGLDGIQG-PIYV 644 (1089)
Q Consensus 570 ~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~v~~VQ~PQ~F~nid~~D~y~n~~~vFfdi~~----~glDg~qg-p~yv 644 (1089)
+|+++|+|.. +.+++|++++.+|.|| +++.||+|+.+++ .++...+.+.++|+... ...+..+. ....
T Consensus 1 ~v~~~DaDt~-~~~d~l~~~~~~~~~~----~~~~vq~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (193)
T PF13632_consen 1 YVLFLDADTR-LPPDFLERLVAALEDP----KVDAVQGPIIFRN--RGSLLTRLQDFEYAISHGLSRLSQSSLGRPLFLS 73 (193)
T ss_pred CEEEEcCCCC-CChHHHHHHHHHHhCC----CceEEEccEEecC--CCChhheeehhhhhhhhhhhHHHHHhcCCCcccc
Confidence 6899999998 7899999999998888 8999999999863 34445555555543211 11111211 2344
Q ss_pred ccccchhhhhhcCCCCCCCCCCCCCcCCCCCCcccccccccccccccCCCccCCcchhhhhhhhhhhhhccccccccCch
Q 001382 645 GTGCVFRRQALYGYDAPVKKKPPRKTCNCLPKWCCCCCRSRKKSKKGKSNKKNKDTSKQIYALENIEEGIEDNEKSSLMP 724 (1089)
Q Consensus 645 GTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (1089)
|+|.++||+|+
T Consensus 74 G~~~~~r~~~l--------------------------------------------------------------------- 84 (193)
T PF13632_consen 74 GSGMLFRREAL--------------------------------------------------------------------- 84 (193)
T ss_pred CcceeeeHHHH---------------------------------------------------------------------
Confidence 55555555544
Q ss_pred hHHHhhhcCCchHHHHHHhHhhCCCCCCCChhhHHHHhHHhhcccccccCccccccCcccccccchHHHHHHHHhCCcEE
Q 001382 725 QIKFEKKFGQSPVFIASTLKEAGGVPTGASTASLLNEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRS 804 (1089)
Q Consensus 725 ~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~~~ea~~v~sc~YE~~T~WG~evGW~ygSvTEDi~Tg~rLh~rGWrs 804 (1089)
+++||++. ..+++||+++++++..+||++
T Consensus 85 -------------------~~vg~~~~--------------------------------~~~~~ED~~l~~~l~~~G~~~ 113 (193)
T PF13632_consen 85 -------------------REVGGFDD--------------------------------PFSIGEDMDLGFRLRRAGYRI 113 (193)
T ss_pred -------------------HHhCcccc--------------------------------cccccchHHHHHHHHHCCCEE
Confidence 56776541 368999999999999999999
Q ss_pred EEecCCCCcccccCCCCHHHHHHhhheecchh
Q 001382 805 VYCIPKRPAFKGSAPINLSDRLHQVLRWALGS 836 (1089)
Q Consensus 805 vY~~p~~~Af~G~aP~tl~~~l~QR~RWA~G~ 836 (1089)
.|+ |+.. ++.++|.|+.++++||+||+.|.
T Consensus 114 ~~~-~~~~-~~~~~p~t~~~~~~Qr~RW~~g~ 143 (193)
T PF13632_consen 114 VYV-PDAI-VYTEAPPTFRAFIRQRRRWARGA 143 (193)
T ss_pred EEe-cccc-eeeeCCCCHHHHHHHHHHHHhhh
Confidence 999 4443 38999999999999999999998
No 38
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=99.53 E-value=7.5e-14 Score=144.64 Aligned_cols=115 Identities=17% Similarity=0.102 Sum_probs=81.7
Q ss_pred cEEEEeccCCCCCCCCCchhhhHHHHHhhc-------cccCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCceEEEEe
Q 001382 534 RLVYVSREKRPGFDHHKKAGAMNALIRVSA-------VISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQ 606 (1089)
Q Consensus 534 ~lvYvsRekrPg~~hh~KAGalNallrvSa-------~~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~v~~VQ 606 (1089)
++.++.++... .+..|++|+|.+++.+. .-..+++|+++|+|.. +.|++|+++..+|.|| +++.||
T Consensus 51 ~v~~i~~~~~~--~~~Gk~~aln~g~~~~~~~~~~~g~~~~~d~v~~~DaD~~-~~~~~l~~~~~~~~~~----~v~~v~ 123 (191)
T cd06436 51 RVHLLRRHLPN--ARTGKGDALNAAYDQIRQILIEEGADPERVIIAVIDADGR-LDPNALEAVAPYFSDP----RVAGTQ 123 (191)
T ss_pred cEEEEeccCCc--CCCCHHHHHHHHHHHHhhhccccccCCCccEEEEECCCCC-cCHhHHHHHHHhhcCC----ceEEEe
Confidence 46666664311 23469999999998631 0012489999999997 8999999988899898 799999
Q ss_pred cCccccCCCccc--c-ccchhhhhhhhhccccccCCCccccccccchhhhhh
Q 001382 607 FPQRFDGIDRHD--R-YSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQAL 655 (1089)
Q Consensus 607 ~PQ~F~nid~~D--~-y~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~AL 655 (1089)
.+.++.|.+.+- + +..+...++.+++.++.......+.|+|++|||+||
T Consensus 124 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~G~~~~~r~~~l 175 (191)
T cd06436 124 SRVRMYNRHKNLLTILQDLEFFIIIAATQSLRALTGTVGLGGNGQFMRLSAL 175 (191)
T ss_pred eeEEEecCCCCHHHHHHHHHHHHHHHHHHHHHHhcCcEEECCeeEEEeHHHH
Confidence 999998865442 1 122333344556666665555567899999998887
No 39
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=99.41 E-value=1.1e-12 Score=134.22 Aligned_cols=102 Identities=20% Similarity=0.123 Sum_probs=63.0
Q ss_pred CCCchhhhHHHHHhhc-cccCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCceEEEEecCccccCCCcccc---ccch
Q 001382 548 HHKKAGAMNALIRVSA-VISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDGIDRHDR---YSNR 623 (1089)
Q Consensus 548 hh~KAGalNallrvSa-~~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~v~~VQ~PQ~F~nid~~D~---y~n~ 623 (1089)
+..|++|+|.+++... .-.++++|+++|+|.. +.|++|++++..|.+. ...||......+.+.+.. +.-.
T Consensus 61 ~~gk~~aln~g~~~a~~~~~~~d~v~~~DaD~~-~~p~~l~~l~~~~~~~-----~~~v~g~~~~~~~~~~~~~~~~~~~ 134 (183)
T cd06438 61 RRGKGYALDFGFRHLLNLADDPDAVVVFDADNL-VDPNALEELNARFAAG-----ARVVQAYYNSKNPDDSWITRLYAFA 134 (183)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCEEEEEcCCCC-CChhHHHHHHHHHhhC-----CCeeEEEEeeeCCccCHHHHHHHHH
Confidence 3469999999988631 1247999999999998 7899999999988653 246887766655433211 1111
Q ss_pred hhhhhhhhccccccCCCc-cccccccchhhhhh
Q 001382 624 NVVFFDINMKGLDGIQGP-IYVGTGCVFRRQAL 655 (1089)
Q Consensus 624 ~~vFfdi~~~glDg~qgp-~yvGTgcvfRR~AL 655 (1089)
..+++.+...++..+.+. ...|+|.+|||++|
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~l 167 (183)
T cd06438 135 FLVFNRLRPLGRSNLGLSCQLGGTGMCFPWAVL 167 (183)
T ss_pred HHHHHHHHHHHHHHcCCCeeecCchhhhHHHHH
Confidence 222223333344334332 34566666666555
No 40
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.37 E-value=1e-11 Score=127.36 Aligned_cols=122 Identities=20% Similarity=0.258 Sum_probs=88.6
Q ss_pred CceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCchhhhHHHHhhhHHHhhhhhhhhhhcCCCCCCchh
Q 001382 366 ADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRAPEW 445 (1089)
Q Consensus 366 P~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFCkk~~Iepr~Pe~ 445 (1089)
|.|.|+|||+| |....+.+|+.|+++.+|| .+.|+|+|||...-+.+.+.
T Consensus 1 p~vsiii~~~n---~~~~~l~~~l~sl~~q~~~--~~eiivvd~gs~d~~~~~~~------------------------- 50 (202)
T cd04184 1 PLISIVMPVYN---TPEKYLREAIESVRAQTYP--NWELCIADDASTDPEVKRVL------------------------- 50 (202)
T ss_pred CeEEEEEeccc---CcHHHHHHHHHHHHhCcCC--CeEEEEEeCCCCChHHHHHH-------------------------
Confidence 57999999998 6667889999999999998 46899999998652211110
Q ss_pred hhhhccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCCcCccccCCCCCCCCCCCCCCcchhhhhccCCCCc
Q 001382 446 YFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVR 525 (1089)
Q Consensus 446 YFs~~~d~~~~~~~~~f~~err~~kreYee~k~rI~~l~~~~~~~p~~~w~m~dg~~w~~~~~rdHp~iiqv~l~~~g~~ 525 (1089)
++| ..
T Consensus 51 -------------------------~~~----------~~---------------------------------------- 55 (202)
T cd04184 51 -------------------------KKY----------AA---------------------------------------- 55 (202)
T ss_pred -------------------------HHH----------Hh----------------------------------------
Confidence 011 00
Q ss_pred cccCCccCcEEEEeccCCCCCCCCCchhhhHHHHHhhccccCCCEEEEecCCCCCCchHHHHHHHHhh-cCCCCCceEEE
Q 001382 526 DIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFM-MDPTSGKKICY 604 (1089)
Q Consensus 526 d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSa~~tngp~Il~lDcD~~~~~p~~Lr~amcff-~Dp~~g~~v~~ 604 (1089)
..+++.++..+. ...++.|+|.+++. +.++||+.+|+|.+ +.|++|.+++-.| .+| ++++
T Consensus 56 -----~~~~~~~~~~~~-----~~g~~~a~n~g~~~----a~~d~i~~ld~D~~-~~~~~l~~~~~~~~~~~----~~~~ 116 (202)
T cd04184 56 -----QDPRIKVVFREE-----NGGISAATNSALEL----ATGEFVALLDHDDE-LAPHALYEVVKALNEHP----DADL 116 (202)
T ss_pred -----cCCCEEEEEccc-----CCCHHHHHHHHHHh----hcCCEEEEECCCCc-CChHHHHHHHHHHHhCC----CCCE
Confidence 001344554443 23589999999985 57899999999997 7999999999877 777 5667
Q ss_pred EecCccc
Q 001382 605 VQFPQRF 611 (1089)
Q Consensus 605 VQ~PQ~F 611 (1089)
|+.....
T Consensus 117 v~~~~~~ 123 (202)
T cd04184 117 IYSDEDK 123 (202)
T ss_pred EEccHHh
Confidence 7665443
No 41
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.30 E-value=5.8e-11 Score=121.99 Aligned_cols=64 Identities=19% Similarity=0.163 Sum_probs=51.1
Q ss_pred EEEEeccCCCCCCCCCchhhhHHHHHhhccccCCCEEEEecCCCCCCchHHHHHHHHhhc-CCCCCceEEEEecCcccc
Q 001382 535 LVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMM-DPTSGKKICYVQFPQRFD 612 (1089)
Q Consensus 535 lvYvsRekrPg~~hh~KAGalNallrvSa~~tngp~Il~lDcD~~~~~p~~Lr~amcff~-Dp~~g~~v~~VQ~PQ~F~ 612 (1089)
+.|+.+++. ..+++|+|.+++. +.|+||+++|+|.+ ..|++|.+++.+|. +| ++++|.......
T Consensus 57 i~~i~~~~n-----~G~~~a~N~g~~~----a~gd~i~~lD~Dd~-~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~ 121 (201)
T cd04195 57 LKVVPLEKN-----RGLGKALNEGLKH----CTYDWVARMDTDDI-SLPDRFEKQLDFIEKNP----EIDIVGGGVLEF 121 (201)
T ss_pred eEEEEcCcc-----ccHHHHHHHHHHh----cCCCEEEEeCCccc-cCcHHHHHHHHHHHhCC----CeEEEcccEEEE
Confidence 556666553 3589999999985 68999999999997 78999999999874 56 677887765544
No 42
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=99.18 E-value=6.7e-11 Score=122.88 Aligned_cols=154 Identities=23% Similarity=0.316 Sum_probs=107.7
Q ss_pred CCCchhhhHHHHHhhccccCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCceEEEEecCccccCCCccccccch-hhh
Q 001382 548 HHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDGIDRHDRYSNR-NVV 626 (1089)
Q Consensus 548 hh~KAGalNallrvSa~~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~v~~VQ~PQ~F~nid~~D~y~n~-~~v 626 (1089)
-+.|..||-++++. ....++|+++|+|+. .+|++|++.+.-|.|| ++++|..+.++.+.+. +... ...
T Consensus 15 ~N~Kv~nL~~~~~~---~a~~d~~~~~DsDi~-v~p~~L~~lv~~l~~p----~vglVt~~~~~~~~~~---~~~~l~~~ 83 (175)
T PF13506_consen 15 CNPKVNNLAQGLEA---GAKYDYLVISDSDIR-VPPDYLRELVAPLADP----GVGLVTGLPRGVPARG---FWSRLEAA 83 (175)
T ss_pred CChHHHHHHHHHHh---hCCCCEEEEECCCee-ECHHHHHHHHHHHhCC----CCcEEEecccccCCcC---HHHHHHHH
Confidence 57899999999984 268999999999998 6899999999999999 7999988766544431 2211 112
Q ss_pred hhhhhccccc--cCCCccccccccchhhhhhcCCCCCCCCCCCCCcCCCCCCcccccccccccccccCCCccCCcchhhh
Q 001382 627 FFDINMKGLD--GIQGPIYVGTGCVFRRQALYGYDAPVKKKPPRKTCNCLPKWCCCCCRSRKKSKKGKSNKKNKDTSKQI 704 (1089)
Q Consensus 627 Ffdi~~~glD--g~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~ 704 (1089)
|+. ..++.- .-..++.
T Consensus 84 ~~~-~~~~~~~a~~~~~~~------------------------------------------------------------- 101 (175)
T PF13506_consen 84 FFN-FLPGVLQALGGAPFA------------------------------------------------------------- 101 (175)
T ss_pred HHh-HHHHHHHHhcCCCce-------------------------------------------------------------
Confidence 221 111000 0011122
Q ss_pred hhhhhhhhhccccccccCchhHHHhhhcCCchHHHHHHhHhhCCCCCCCChhhHHHHhHHhhcccccccCccccccCccc
Q 001382 705 YALENIEEGIEDNEKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGASTASLLNEAIHVISCGYEDKTDWGKEIGWIY 784 (1089)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~~~ea~~v~sc~YE~~T~WG~evGW~y 784 (1089)
+|.+..|++++|+++||+.. ..
T Consensus 102 ---------------------------~G~~m~~rr~~L~~~GG~~~-------------------------------l~ 123 (175)
T PF13506_consen 102 ---------------------------WGGSMAFRREALEEIGGFEA-------------------------------LA 123 (175)
T ss_pred ---------------------------ecceeeeEHHHHHHcccHHH-------------------------------Hh
Confidence 35555666677778888753 01
Q ss_pred ccccchHHHHHHHHhCCcEEEEecCCCCcccccCC----CCHHHHHHhhheecc
Q 001382 785 GSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAP----INLSDRLHQVLRWAL 834 (1089)
Q Consensus 785 gSvTEDi~Tg~rLh~rGWrsvY~~p~~~Af~G~aP----~tl~~~l~QR~RWA~ 834 (1089)
+.++||+.+|-+++.+||++++.. .... ....| .++.++++++.||++
T Consensus 124 ~~ladD~~l~~~~~~~G~~v~~~~-~~v~-~~~~~~~~~~s~~~~~~r~~RW~r 175 (175)
T PF13506_consen 124 DYLADDYALGRRLRARGYRVVLSP-YPVV-QTSVPRTLEDSFRDFFRRQLRWAR 175 (175)
T ss_pred hhhhHHHHHHHHHHHCCCeEEEcc-hhee-ecccCccccccHHHHHHHHHhhcC
Confidence 478999999999999999999984 2222 45566 489999999999985
No 43
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.18 E-value=4.8e-10 Score=113.40 Aligned_cols=54 Identities=19% Similarity=0.077 Sum_probs=42.9
Q ss_pred CchhhhHHHHHhhccccCCCEEEEecCCCCCCchHHHHHHHH-hhcCCCCCceEEEEecCcccc
Q 001382 550 KKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMC-FMMDPTSGKKICYVQFPQRFD 612 (1089)
Q Consensus 550 ~KAGalNallrvSa~~tngp~Il~lDcD~~~~~p~~Lr~amc-ff~Dp~~g~~v~~VQ~PQ~F~ 612 (1089)
.+++|+|.+++. ++++||+++|+|.. ..++.+.+.+. +..++ ++.+|.....+.
T Consensus 62 g~~~a~n~~~~~----a~~~~v~~ld~D~~-~~~~~~~~~~~~~~~~~----~~~~v~g~~~~~ 116 (202)
T cd06433 62 GIYDAMNKGIAL----ATGDIIGFLNSDDT-LLPGALLAVVAAFAEHP----EVDVVYGDVLLV 116 (202)
T ss_pred CHHHHHHHHHHH----cCCCEEEEeCCCcc-cCchHHHHHHHHHHhCC----CccEEEeeeEEE
Confidence 589999999985 68999999999998 68899999984 55666 566676655443
No 44
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=99.08 E-value=2.4e-09 Score=118.63 Aligned_cols=109 Identities=18% Similarity=0.125 Sum_probs=82.6
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCchhhhHHHHhhhHHHhhhhhhhhhhcCCCCCCchhhhhh
Q 001382 370 IFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRAPEWYFAQ 449 (1089)
Q Consensus 370 vfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFCkk~~Iepr~Pe~YFs~ 449 (1089)
|+|||+| |++..+.+||.|+++..||.....|+|.|||++.-|.+.+.+
T Consensus 2 IIIp~~N---~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~---------------------------- 50 (299)
T cd02510 2 VIIIFHN---EALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLE---------------------------- 50 (299)
T ss_pred EEEEEec---CcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHH----------------------------
Confidence 7999999 887999999999999999866678999999998743332110
Q ss_pred ccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCCcCccccCCCCCCCCCCCCCCcchhhhhccCCCCccccC
Q 001382 450 KLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVRDIEG 529 (1089)
Q Consensus 450 ~~d~~~~~~~~~f~~err~~kreYee~k~rI~~l~~~~~~~p~~~w~m~dg~~w~~~~~rdHp~iiqv~l~~~g~~d~~~ 529 (1089)
+...
T Consensus 51 -------------------------~~~~--------------------------------------------------- 54 (299)
T cd02510 51 -------------------------EYYK--------------------------------------------------- 54 (299)
T ss_pred -------------------------HHHh---------------------------------------------------
Confidence 0000
Q ss_pred CccCcEEEEeccCCCCCCCCCchhhhHHHHHhhccccCCCEEEEecCCCCCCchHHHHHHHHhhcC
Q 001382 530 NLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMD 595 (1089)
Q Consensus 530 ~~lP~lvYvsRekrPg~~hh~KAGalNallrvSa~~tngp~Il~lDcD~~~~~p~~Lr~amcff~D 595 (1089)
...|++.++..++ ...++.|.|.+++. +.|+||+.||+|.+ +.|++|.+.+-.+..
T Consensus 55 ~~~~~v~vi~~~~-----n~G~~~a~N~g~~~----A~gd~i~fLD~D~~-~~~~wL~~ll~~l~~ 110 (299)
T cd02510 55 KYLPKVKVLRLKK-----REGLIRARIAGARA----ATGDVLVFLDSHCE-VNVGWLEPLLARIAE 110 (299)
T ss_pred hcCCcEEEEEcCC-----CCCHHHHHHHHHHH----ccCCEEEEEeCCcc-cCccHHHHHHHHHHh
Confidence 0113466665554 23589999999995 68999999999998 699999999987754
No 45
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.08 E-value=1.7e-09 Score=111.46 Aligned_cols=64 Identities=16% Similarity=0.185 Sum_probs=49.4
Q ss_pred EEEEeccCCCCCCCCCchhhhHHHHHhhccccCCCEEEEecCCCCCCchHHHHHHHHh-hcCCCCCceEEEEecCcccc
Q 001382 535 LVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCF-MMDPTSGKKICYVQFPQRFD 612 (1089)
Q Consensus 535 lvYvsRekrPg~~hh~KAGalNallrvSa~~tngp~Il~lDcD~~~~~p~~Lr~amcf-f~Dp~~g~~v~~VQ~PQ~F~ 612 (1089)
+.++..++ .+.+++|+|.+++. ++++||+++|+|-+ ..|+.|.+.+.. +.+| +.+++.....+.
T Consensus 56 ~~~~~~~~-----~~G~~~~~n~g~~~----~~g~~v~~ld~Dd~-~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~ 120 (214)
T cd04196 56 IILIRNGK-----NLGVARNFESLLQA----ADGDYVFFCDQDDI-WLPDKLERLLKAFLKDD----KPLLVYSDLELV 120 (214)
T ss_pred EEEEeCCC-----CccHHHHHHHHHHh----CCCCEEEEECCCcc-cChhHHHHHHHHHhcCC----CceEEecCcEEE
Confidence 44444444 34689999999884 68999999999997 689999999997 5566 677777775543
No 46
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=99.06 E-value=7e-11 Score=97.85 Aligned_cols=48 Identities=35% Similarity=1.025 Sum_probs=30.4
Q ss_pred ccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCCccccc
Q 001382 39 CQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1089)
Q Consensus 39 C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Yk 89 (1089)
|.+|.+++ +++|..|.+| ||+|.|||.||...++++++.||+||++||
T Consensus 1 cp~C~e~~--d~~d~~~~PC-~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y~ 48 (48)
T PF14570_consen 1 CPLCDEEL--DETDKDFYPC-ECGFQICRFCYHDILENEGGRCPGCREPYK 48 (48)
T ss_dssp -TTTS-B----CCCTT--SS-TTS----HHHHHHHTTSS-SB-TTT--B--
T ss_pred CCCccccc--ccCCCccccC-cCCCcHHHHHHHHHHhccCCCCCCCCCCCC
Confidence 67899997 8899999999 999999999999999889999999999996
No 47
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.05 E-value=4.3e-09 Score=109.55 Aligned_cols=42 Identities=17% Similarity=0.070 Sum_probs=35.2
Q ss_pred CchhhhHHHHHhhccccCCCEEEEecCCCCCCchHHHHHHHHhhcCC
Q 001382 550 KKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDP 596 (1089)
Q Consensus 550 ~KAGalNallrvSa~~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp 596 (1089)
.|++|+|.+++. .++++|+++|.|.+ +.|++|.+.+..+.++
T Consensus 59 g~~~a~n~g~~~----a~~~~i~~~D~D~~-~~~~~l~~l~~~~~~~ 100 (221)
T cd02522 59 GRARQMNAGAAA----ARGDWLLFLHADTR-LPPDWDAAIIETLRAD 100 (221)
T ss_pred CHHHHHHHHHHh----ccCCEEEEEcCCCC-CChhHHHHHHHHhhcC
Confidence 489999999885 56999999999998 6899999986666554
No 48
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=99.04 E-value=5.2e-09 Score=105.67 Aligned_cols=42 Identities=21% Similarity=0.367 Sum_probs=37.0
Q ss_pred CCchhhhHHHHHhhccccCCCEEEEecCCCCCCchHHHHHHHHhhcCC
Q 001382 549 HKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDP 596 (1089)
Q Consensus 549 h~KAGalNallrvSa~~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp 596 (1089)
..|++|+|.+++. ++++||+.+|+|.. +.|++|.+.+-++ ++
T Consensus 65 ~~~~~~~n~g~~~----a~g~~i~~lD~D~~-~~~~~l~~~~~~~-~~ 106 (182)
T cd06420 65 FRKAKIRNKAIAA----AKGDYLIFIDGDCI-PHPDFIADHIELA-EP 106 (182)
T ss_pred hhHHHHHHHHHHH----hcCCEEEEEcCCcc-cCHHHHHHHHHHh-CC
Confidence 3689999999985 68999999999997 7999999999887 54
No 49
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.02 E-value=6.2e-09 Score=102.29 Aligned_cols=51 Identities=24% Similarity=0.171 Sum_probs=41.5
Q ss_pred CCchhhhHHHHHhhccccCCCEEEEecCCCCCCchHHHHHHHHhhc-CCCCCceEEEEecC
Q 001382 549 HKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMM-DPTSGKKICYVQFP 608 (1089)
Q Consensus 549 h~KAGalNallrvSa~~tngp~Il~lDcD~~~~~p~~Lr~amcff~-Dp~~g~~v~~VQ~P 608 (1089)
..+++|+|.+++. .++++|+.+|+|.+ +.++++.+.+-.+. +| +++.|+..
T Consensus 60 ~g~~~a~n~~~~~----~~~~~i~~~D~D~~-~~~~~l~~~~~~~~~~~----~~~~~~~~ 111 (166)
T cd04186 60 LGFGAGNNQGIRE----AKGDYVLLLNPDTV-VEPGALLELLDAAEQDP----DVGIVGPK 111 (166)
T ss_pred cChHHHhhHHHhh----CCCCEEEEECCCcE-ECccHHHHHHHHHHhCC----CceEEEcc
Confidence 3689999999985 48999999999998 78999999997554 44 67776554
No 50
>PF03142 Chitin_synth_2: Chitin synthase; InterPro: IPR004835 Chitin synthase (2.4.1.16 from EC), also known as chitin-UDP acetyl-glucosaminyl transferase, is a plasma membrane-bound protein which catalyses the conversion of UDP-N-acettyl-D-glucosamine and {(1,4)-(N-acetyl- beta-D-glucosaminyl)}(N) to UDP and {(1,4)-(N-acetyl-beta-D- glucosaminyl)}(N+1). It plays a major role in cell wall biogenesis. ; GO: 0016758 transferase activity, transferring hexosyl groups
Probab=99.00 E-value=5.4e-08 Score=116.21 Aligned_cols=53 Identities=26% Similarity=0.345 Sum_probs=44.4
Q ss_pred cccchHHHHHHHHhC--CcEEEEecCCCCcccccCCCCHHHHHHhhheecchhhHHH
Q 001382 786 SVTEDILTGFKMHCH--GWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEIL 840 (1089)
Q Consensus 786 SvTEDi~Tg~rLh~r--GWrsvY~~p~~~Af~G~aP~tl~~~l~QR~RWA~G~lQIl 840 (1089)
.+.||=.++..|..+ |||..|+ |...| +..+|++++.+++||+||..|++--+
T Consensus 324 ~lGEDR~LttLlLk~~~~~k~~y~-~~A~a-~T~aP~t~~vflsQRRRWinSTi~Nl 378 (527)
T PF03142_consen 324 DLGEDRWLTTLLLKQFPGYKTEYV-PSAVA-YTDAPETFSVFLSQRRRWINSTIHNL 378 (527)
T ss_pred hcchhHHHHHHHHhhCCCceEEEc-ccccc-cccCCccHHHHHHHhhhccchhHhhH
Confidence 567998877767766 8999999 55556 89999999999999999999998543
No 51
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=98.96 E-value=2e-08 Score=108.04 Aligned_cols=60 Identities=12% Similarity=0.058 Sum_probs=45.9
Q ss_pred EEEEeccCCCCCCCCCchhhhHHHHHhhccccCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCceEEEEecC
Q 001382 535 LVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFP 608 (1089)
Q Consensus 535 lvYvsRekrPg~~hh~KAGalNallrvSa~~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~v~~VQ~P 608 (1089)
+.++.+++. ..|++|+|++++. +.|+||+.+|+|.. .+|++|.+++-.+.++ +..+|...
T Consensus 70 v~~~~~~~n-----~G~~~a~n~g~~~----a~g~~i~~lD~D~~-~~~~~l~~l~~~~~~~----~~~~v~g~ 129 (243)
T PLN02726 70 ILLRPRPGK-----LGLGTAYIHGLKH----ASGDFVVIMDADLS-HHPKYLPSFIKKQRET----GADIVTGT 129 (243)
T ss_pred EEEEecCCC-----CCHHHHHHHHHHH----cCCCEEEEEcCCCC-CCHHHHHHHHHHHHhc----CCcEEEEc
Confidence 555555442 2489999999985 68999999999997 7999999999888665 34555543
No 52
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=98.96 E-value=9.5e-09 Score=99.80 Aligned_cols=62 Identities=31% Similarity=0.402 Sum_probs=46.9
Q ss_pred EEEEeccCCCCCCCCCchhhhHHHHHhhccccCCCEEEEecCCCCCCchHHHHHHH-HhhcCCCCCceEEEEecCcc
Q 001382 535 LVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAM-CFMMDPTSGKKICYVQFPQR 610 (1089)
Q Consensus 535 lvYvsRekrPg~~hh~KAGalNallrvSa~~tngp~Il~lDcD~~~~~p~~Lr~am-cff~Dp~~g~~v~~VQ~PQ~ 610 (1089)
++|+.+++. ..|+.|+|.+++. .++++|+++|+|.+ ..|++|.+.+ .++.++ +++.|.....
T Consensus 55 ~~~~~~~~~-----~g~~~~~n~~~~~----~~~~~i~~~D~D~~-~~~~~l~~~~~~~~~~~----~~~~v~~~~~ 117 (180)
T cd06423 55 VLVVRDKEN-----GGKAGALNAGLRH----AKGDIVVVLDADTI-LEPDALKRLVVPFFADP----KVGAVQGRVR 117 (180)
T ss_pred EEEEEeccc-----CCchHHHHHHHHh----cCCCEEEEECCCCC-cChHHHHHHHHHhccCC----CeeeEeeeEE
Confidence 455555543 3599999999996 58999999999998 6899999994 455666 5666665443
No 53
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=98.95 E-value=1.2e-08 Score=107.55 Aligned_cols=65 Identities=18% Similarity=0.190 Sum_probs=45.3
Q ss_pred EEEEeccCCCCCCCCCchhhhHHHHHhhccccCCCEEEEecCCCCCCchHHHHHHH---Hhh-cCCCCCceEEEEecCcc
Q 001382 535 LVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAM---CFM-MDPTSGKKICYVQFPQR 610 (1089)
Q Consensus 535 lvYvsRekrPg~~hh~KAGalNallrvSa~~tngp~Il~lDcD~~~~~p~~Lr~am---cff-~Dp~~g~~v~~VQ~PQ~ 610 (1089)
+.++..++.. .+|+|+|.+++.+.- .+++||+.+|+|.+ .+|++|.+++ -.+ .+| .++.+ .|+.
T Consensus 49 i~~i~~~~n~-----G~~~a~N~g~~~a~~-~~~d~v~~lD~D~~-~~~~~l~~l~~~~~~~~~~~----~~~~~-~~~~ 116 (237)
T cd02526 49 IELIHLGENL-----GIAKALNIGIKAALE-NGADYVLLFDQDSV-PPPDMVEKLLAYKILSDKNS----NIGAV-GPRI 116 (237)
T ss_pred EEEEECCCce-----ehHHhhhHHHHHHHh-CCCCEEEEECCCCC-cCHhHHHHHHHHHHhhccCC----CeEEE-eeeE
Confidence 5666665533 499999999985321 25699999999998 6899999985 333 344 55554 4554
Q ss_pred c
Q 001382 611 F 611 (1089)
Q Consensus 611 F 611 (1089)
.
T Consensus 117 ~ 117 (237)
T cd02526 117 I 117 (237)
T ss_pred E
Confidence 3
No 54
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=98.92 E-value=2.2e-08 Score=105.28 Aligned_cols=55 Identities=16% Similarity=0.135 Sum_probs=40.3
Q ss_pred EEEEeccCCCCCCCCCchhhhHHHHHhhccccCCCEEEEecCCCCCCchHHHHHHHHhhcC
Q 001382 535 LVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMD 595 (1089)
Q Consensus 535 lvYvsRekrPg~~hh~KAGalNallrvSa~~tngp~Il~lDcD~~~~~p~~Lr~amcff~D 595 (1089)
+.++.++...+ .....+.|+|.+++. ++|+||+.+|+|-+ ..|+.|.+.+..+.+
T Consensus 57 ~~~~~~~~~~~-~~~G~~~a~N~g~~~----a~gd~i~~lD~D~~-~~~~~l~~~~~~~~~ 111 (219)
T cd06913 57 VIVLVGSHNSP-SPKGVGYAKNQAIAQ----SSGRYLCFLDSDDV-MMPQRIRLQYEAALQ 111 (219)
T ss_pred eEEEEecccCC-CCccHHHHHHHHHHh----cCCCEEEEECCCcc-CChhHHHHHHHHHHh
Confidence 45554443211 234678899999985 78999999999997 788999887776643
No 55
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.88 E-value=3.2e-08 Score=102.22 Aligned_cols=65 Identities=15% Similarity=0.219 Sum_probs=46.9
Q ss_pred EEEEeccCCCCCCCCCchhhhHHHHHhhccccCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCceEEEEecCccc
Q 001382 535 LVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRF 611 (1089)
Q Consensus 535 lvYvsRekrPg~~hh~KAGalNallrvSa~~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~v~~VQ~PQ~F 611 (1089)
+.|+.-++. +..+.++|.+++..- ...++|++.+|+|.+ +.|++|++++-.+.+| +++.| +|.++
T Consensus 53 i~~~~~~~n-----~g~~~~~n~~~~~a~-~~~~d~v~~ld~D~~-~~~~~l~~l~~~~~~~----~~~~~-~~~~~ 117 (202)
T cd04185 53 IVYLRLPEN-----LGGAGGFYEGVRRAY-ELGYDWIWLMDDDAI-PDPDALEKLLAYADKD----NPQFL-APLVL 117 (202)
T ss_pred eEEEECccc-----cchhhHHHHHHHHHh-ccCCCEEEEeCCCCC-cChHHHHHHHHHHhcC----CceEe-cceeE
Confidence 445554442 347888998887532 457899999999997 7899999999988777 55655 34443
No 56
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=98.87 E-value=3.1e-09 Score=103.44 Aligned_cols=110 Identities=16% Similarity=0.144 Sum_probs=75.1
Q ss_pred cEEEEeccCCCCCCCCCchhhhHHHHHhhccccCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCceEEEEecCccccC
Q 001382 534 RLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDG 613 (1089)
Q Consensus 534 ~lvYvsRekrPg~~hh~KAGalNallrvSa~~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~v~~VQ~PQ~F~n 613 (1089)
++.|+.+++ +. .+++|+|.+++. ..++||+.+|+|.+ ..+++|.+.+.++.+.. ..+.+...+....+
T Consensus 54 ~i~~i~~~~----n~-g~~~~~n~~~~~----a~~~~i~~ld~D~~-~~~~~l~~l~~~~~~~~--~~~~~~~~~~~~~~ 121 (169)
T PF00535_consen 54 NIRYIRNPE----NL-GFSAARNRGIKH----AKGEYILFLDDDDI-ISPDWLEELVEALEKNP--PDVVIGSVIYIDDD 121 (169)
T ss_dssp TEEEEEHCC----CS-HHHHHHHHHHHH------SSEEEEEETTEE-E-TTHHHHHHHHHHHCT--TEEEEEEEEEEECT
T ss_pred ccccccccc----cc-cccccccccccc----cceeEEEEeCCCce-EcHHHHHHHHHHHHhCC--CcEEEEEEEEecCC
Confidence 488999987 33 799999999995 68899999999998 67789999999998742 24444444444433
Q ss_pred CCcccccc--chhhhhhhhhccccccCCCccccccccchhhhhh
Q 001382 614 IDRHDRYS--NRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQAL 655 (1089)
Q Consensus 614 id~~D~y~--n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~AL 655 (1089)
........ .....++............+.++|.+.++||++|
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~ 165 (169)
T PF00535_consen 122 NRYPDRRLRFSFWNRFERKIFNNIRFWKISFFIGSCALFRRSVF 165 (169)
T ss_dssp TETEECCCTSEEEECCHCHHHHTTHSTTSSEESSSCEEEEEHHH
T ss_pred ccccccccchhhhhhhhhHHHHhhhcCCcccccccEEEEEHHHH
Confidence 32222111 1223344444555666778899999999999988
No 57
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=98.86 E-value=5.5e-08 Score=101.52 Aligned_cols=60 Identities=10% Similarity=0.063 Sum_probs=46.2
Q ss_pred EEEEeccCCCCCCCCCchhhhHHHHHhhccccCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCceEEEEecC
Q 001382 535 LVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFP 608 (1089)
Q Consensus 535 lvYvsRekrPg~~hh~KAGalNallrvSa~~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~v~~VQ~P 608 (1089)
+.++..++. ..|++|+|.+++. +.+++|+.+|+|.. .+|++|...+..+.++ +...|..+
T Consensus 55 i~~~~~~~n-----~G~~~a~n~g~~~----a~gd~i~~lD~D~~-~~~~~l~~l~~~~~~~----~~~~v~g~ 114 (224)
T cd06442 55 VRLIVRPGK-----RGLGSAYIEGFKA----ARGDVIVVMDADLS-HPPEYIPELLEAQLEG----GADLVIGS 114 (224)
T ss_pred eEEEecCCC-----CChHHHHHHHHHH----cCCCEEEEEECCCC-CCHHHHHHHHHHHhcC----CCCEEEEe
Confidence 444555543 3589999999985 57899999999997 7999999999987766 34455554
No 58
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=98.62 E-value=4.4e-07 Score=94.86 Aligned_cols=51 Identities=18% Similarity=0.111 Sum_probs=41.2
Q ss_pred CchhhhHHHHHhhccccCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCceEEEEecCc
Q 001382 550 KKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQ 609 (1089)
Q Consensus 550 ~KAGalNallrvSa~~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~v~~VQ~PQ 609 (1089)
.|++|+|.+++. +.++||+.+|+|.. ..|+++.+.+..+.++ ....|..+.
T Consensus 69 G~~~a~~~g~~~----a~gd~i~~ld~D~~-~~~~~l~~l~~~~~~~----~~~~v~g~r 119 (211)
T cd04188 69 GKGGAVRAGMLA----ARGDYILFADADLA-TPFEELEKLEEALKTS----GYDIAIGSR 119 (211)
T ss_pred CcHHHHHHHHHH----hcCCEEEEEeCCCC-CCHHHHHHHHHHHhcc----CCcEEEEEe
Confidence 499999999995 68899999999997 7999999999987654 234455443
No 59
>PRK10073 putative glycosyl transferase; Provisional
Probab=98.61 E-value=6.1e-07 Score=102.03 Aligned_cols=110 Identities=15% Similarity=0.208 Sum_probs=82.9
Q ss_pred CCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCchhhhHHHHhhhHHHhhhhhhhhhhcCCCCCCc
Q 001382 364 DLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRAP 443 (1089)
Q Consensus 364 ~lP~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFCkk~~Iepr~P 443 (1089)
..|.|.|+||+|| ++ ..+..++-|+++..|+ .+.|+|.|||+++-|.+-+
T Consensus 4 ~~p~vSVIIP~yN---~~-~~L~~~l~Sl~~Qt~~--~~EIIiVdDgStD~t~~i~------------------------ 53 (328)
T PRK10073 4 STPKLSIIIPLYN---AG-KDFRAFMESLIAQTWT--ALEIIIVNDGSTDNSVEIA------------------------ 53 (328)
T ss_pred CCCeEEEEEeccC---CH-HHHHHHHHHHHhCCCC--CeEEEEEeCCCCccHHHHH------------------------
Confidence 3578999999998 54 6889999999999997 5789999999886332211
Q ss_pred hhhhhhccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCCcCccccCCCCCCCCCCCCCCcchhhhhccCCC
Q 001382 444 EWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNG 523 (1089)
Q Consensus 444 e~YFs~~~d~~~~~~~~~f~~err~~kreYee~k~rI~~l~~~~~~~p~~~w~m~dg~~w~~~~~rdHp~iiqv~l~~~g 523 (1089)
++|.+
T Consensus 54 ---------------------------~~~~~------------------------------------------------ 58 (328)
T PRK10073 54 ---------------------------KHYAE------------------------------------------------ 58 (328)
T ss_pred ---------------------------HHHHh------------------------------------------------
Confidence 11110
Q ss_pred CccccCCccCcEEEEeccCCCCCCCCCchhhhHHHHHhhccccCCCEEEEecCCCCCCchHHHHHHHHhhcCC
Q 001382 524 VRDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDP 596 (1089)
Q Consensus 524 ~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSa~~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp 596 (1089)
+.|++.++..+ ....++|.|.+++. +.|+||+.+|+|-+ ..|+.|.+.+..+.++
T Consensus 59 -------~~~~i~vi~~~------n~G~~~arN~gl~~----a~g~yi~flD~DD~-~~p~~l~~l~~~~~~~ 113 (328)
T PRK10073 59 -------NYPHVRLLHQA------NAGVSVARNTGLAV----ATGKYVAFPDADDV-VYPTMYETLMTMALED 113 (328)
T ss_pred -------hCCCEEEEECC------CCChHHHHHHHHHh----CCCCEEEEECCCCc-cChhHHHHHHHHHHhC
Confidence 01245555432 23689999999985 79999999999998 6899999999877654
No 60
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=98.56 E-value=4.8e-07 Score=91.50 Aligned_cols=65 Identities=11% Similarity=0.117 Sum_probs=49.9
Q ss_pred EEEEeccCCCCCCCCCchhhhHHHHHhhccccCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCceEEEEecCccccC
Q 001382 535 LVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDG 613 (1089)
Q Consensus 535 lvYvsRekrPg~~hh~KAGalNallrvSa~~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~v~~VQ~PQ~F~n 613 (1089)
+.++..+++. .|++|+|.+++. +.+++|+++|+|-. ..|++|.+.+-.+..+ +..+|+.+....+
T Consensus 56 ~~~~~~~~n~-----G~~~a~n~g~~~----a~gd~i~~lD~D~~-~~~~~l~~l~~~~~~~----~~~~v~g~~~~~~ 120 (185)
T cd04179 56 VRVIRLSRNF-----GKGAAVRAGFKA----ARGDIVVTMDADLQ-HPPEDIPKLLEKLLEG----GADVVIGSRFVRG 120 (185)
T ss_pred eEEEEccCCC-----CccHHHHHHHHH----hcCCEEEEEeCCCC-CCHHHHHHHHHHHhcc----CCcEEEEEeecCC
Confidence 4555555544 499999999985 67899999999997 6999999999986654 4566777765544
No 61
>PRK10018 putative glycosyl transferase; Provisional
Probab=98.52 E-value=2.7e-06 Score=94.94 Aligned_cols=52 Identities=15% Similarity=0.264 Sum_probs=42.6
Q ss_pred cEEEEeccCCCCCCCCCchhhhHHHHHhhccccCCCEEEEecCCCCCCchHHHHHHHHhhcC
Q 001382 534 RLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMD 595 (1089)
Q Consensus 534 ~lvYvsRekrPg~~hh~KAGalNallrvSa~~tngp~Il~lDcD~~~~~p~~Lr~amcff~D 595 (1089)
++.|+..++. ..++.|+|.++.. ++|+||+.+|+|.+ ..|+.|.+.+-++..
T Consensus 61 ri~~i~~~~n-----~G~~~a~N~gi~~----a~g~~I~~lDaDD~-~~p~~l~~~~~~~~~ 112 (279)
T PRK10018 61 RITYIHNDIN-----SGACAVRNQAIML----AQGEYITGIDDDDE-WTPNRLSVFLAHKQQ 112 (279)
T ss_pred CEEEEECCCC-----CCHHHHHHHHHHH----cCCCEEEEECCCCC-CCccHHHHHHHHHHh
Confidence 5777776653 3589999999985 79999999999998 689999988887643
No 62
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=98.49 E-value=2.9e-06 Score=93.15 Aligned_cols=68 Identities=18% Similarity=0.221 Sum_probs=49.1
Q ss_pred cEEEEeccCCCCCCCCCchhhhHHHHHhhccccCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCceEEEEecCccc
Q 001382 534 RLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRF 611 (1089)
Q Consensus 534 ~lvYvsRekrPg~~hh~KAGalNallrvSa~~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~v~~VQ~PQ~F 611 (1089)
.+.|+.-++. ...|+|+|.+++.. .-.+++||+.+|.|.+ +.+++|.+.+.++..+ +.+++.|. |..+
T Consensus 46 ~i~~i~~~~N-----~G~a~a~N~Gi~~a-~~~~~d~i~~lD~D~~-~~~~~l~~l~~~~~~~--~~~~~~~~-~~~~ 113 (281)
T TIGR01556 46 KIALIHLGDN-----QGIAGAQNQGLDAS-FRRGVQGVLLLDQDSR-PGNAFLAAQWKLLSAE--NGQACALG-PRFF 113 (281)
T ss_pred CeEEEECCCC-----cchHHHHHHHHHHH-HHCCCCEEEEECCCCC-CCHHHHHHHHHHHHhc--CCceEEEC-CeEE
Confidence 4666665543 35899999998852 1237899999999998 6899999999887542 12677775 4443
No 63
>PRK10063 putative glycosyl transferase; Provisional
Probab=98.34 E-value=8.6e-06 Score=89.13 Aligned_cols=46 Identities=15% Similarity=0.029 Sum_probs=35.9
Q ss_pred CceeEEEecCCCCCCCHHHHHHHHHHHHcC-CCCCCCcEEEEcCCCchhhh
Q 001382 366 ADIDIFVSTVDPMKEPPLITANTVLSILAV-DYPVDKVACYVSDDGAAMLT 415 (1089)
Q Consensus 366 P~VDvfV~T~dP~kEPp~v~~nTvls~la~-DYP~~kl~~yvsDDG~s~lt 415 (1089)
|.|.|+||||| |. ..+..|+.|++++ ..+...+.++|.|||.++-|
T Consensus 1 ~~vSVIi~~yN---~~-~~l~~~l~sl~~~~~~~~~~~EiIVvDdgStD~t 47 (248)
T PRK10063 1 MLLSVITVAFR---NL-EGIVKTHASLRHLAQDPGISFEWIVVDGGSNDGT 47 (248)
T ss_pred CeEEEEEEeCC---CH-HHHHHHHHHHHHHHhCCCCCEEEEEEECcCcccH
Confidence 56899999998 64 5689999999864 23334789999999998744
No 64
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=98.34 E-value=9e-06 Score=77.06 Aligned_cols=52 Identities=25% Similarity=0.312 Sum_probs=41.8
Q ss_pred CCCchhhhHHHHHhhccccCCCEEEEecCCCCCCchHHHHHHHH-hhcCCCCCceEEEEecC
Q 001382 548 HHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMC-FMMDPTSGKKICYVQFP 608 (1089)
Q Consensus 548 hh~KAGalNallrvSa~~tngp~Il~lDcD~~~~~p~~Lr~amc-ff~Dp~~g~~v~~VQ~P 608 (1089)
+..|++++|.++.. .++++++++|+|.+ ..|+++...+- +..++ +...|+.+
T Consensus 62 ~~g~~~~~~~~~~~----~~~d~v~~~d~D~~-~~~~~~~~~~~~~~~~~----~~~~v~~~ 114 (156)
T cd00761 62 NQGLAAARNAGLKA----ARGEYILFLDADDL-LLPDWLERLVAELLADP----EADAVGGP 114 (156)
T ss_pred CCChHHHHHHHHHH----hcCCEEEEECCCCc-cCccHHHHHHHHHhcCC----CceEEecc
Confidence 34699999999986 47999999999997 68899988744 45555 67778776
No 65
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=98.32 E-value=4.6e-06 Score=84.86 Aligned_cols=105 Identities=13% Similarity=0.202 Sum_probs=63.0
Q ss_pred cEEEEeccCCCCCCCCCchhhhHHHHHhhccccCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCceEEEEecCccccC
Q 001382 534 RLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDG 613 (1089)
Q Consensus 534 ~lvYvsRekrPg~~hh~KAGalNallrvSa~~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~v~~VQ~PQ~F~n 613 (1089)
++.|+..++ +..|++|+|++++. +.+++|+.+|+|.. ..+++|.+.+.. +++. .++.+.+... .+
T Consensus 56 ~i~~i~~~~-----n~G~~~a~n~g~~~----a~~d~i~~~D~D~~-~~~~~l~~l~~~-~~~~--~~~v~g~~~~--~~ 120 (181)
T cd04187 56 RVKVIRLSR-----NFGQQAALLAGLDH----ARGDAVITMDADLQ-DPPELIPEMLAK-WEEG--YDVVYGVRKN--RK 120 (181)
T ss_pred CEEEEEecC-----CCCcHHHHHHHHHh----cCCCEEEEEeCCCC-CCHHHHHHHHHH-HhCC--CcEEEEEecC--Cc
Confidence 355655544 23599999999985 67899999999997 789999999987 4432 2444433222 11
Q ss_pred CCccccccchhhhhhhhhccccccCCCccccccccchhhhhhc
Q 001382 614 IDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALY 656 (1089)
Q Consensus 614 id~~D~y~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALy 656 (1089)
.....++.+. .++. ....+.+..-+...|+..++||+++-
T Consensus 121 ~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~ 160 (181)
T cd04187 121 ESWLKRLTSK--LFYR-LINKLSGVDIPDNGGDFRLMDRKVVD 160 (181)
T ss_pred chHHHHHHHH--HHHH-HHHHHcCCCCCCCCCCEEEEcHHHHH
Confidence 1111111111 1111 11222334445666777899999985
No 66
>KOG2571 consensus Chitin synthase/hyaluronan synthase (glycosyltransferases) [Cell wall/membrane/envelope biogenesis]
Probab=98.24 E-value=2.2e-05 Score=97.58 Aligned_cols=50 Identities=26% Similarity=0.318 Sum_probs=44.5
Q ss_pred cccchHHHHHHHHhCCcEEEEecCCCCcccccCCCCHHHHHHhhheecchhh
Q 001382 786 SVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSV 837 (1089)
Q Consensus 786 SvTEDi~Tg~rLh~rGWrsvY~~p~~~Af~G~aP~tl~~~l~QR~RWA~G~l 837 (1089)
+..||=.+..++..+||+.-|+.. ..| ...+|+++..++.||+||..|.+
T Consensus 549 ~~geDR~L~~~llskgy~l~Y~a~-s~a-~t~~Pe~~~efl~QrrRW~~s~f 598 (862)
T KOG2571|consen 549 SLGEDRWLCTLLLSKGYRLKYVAA-SDA-ETEAPESFLEFLNQRRRWLNSIF 598 (862)
T ss_pred ccchhHHHHHHHHhccceeeeecc-ccc-cccCcHhHHHHHHHhhhhcccch
Confidence 478999999999999999999943 444 89999999999999999999933
No 67
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=98.21 E-value=3.2e-05 Score=85.98 Aligned_cols=63 Identities=13% Similarity=0.204 Sum_probs=45.5
Q ss_pred CCchhhhHHHHHhhccccCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCceEEEEecCccccCCCcc
Q 001382 549 HKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDGIDRH 617 (1089)
Q Consensus 549 h~KAGalNallrvSa~~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~v~~VQ~PQ~F~nid~~ 617 (1089)
-.+|.|.|.++.. +++++|+.+|+|.+ +.|+++.+++-+...=. ....+++-.|..|.+.+..
T Consensus 74 f~~a~arN~g~~~----A~~d~l~flD~D~i-~~~~~i~~~~~~~~~l~-~~~~~~~~~p~~yl~~~~~ 136 (281)
T PF10111_consen 74 FSRAKARNIGAKY----ARGDYLIFLDADCI-PSPDFIEKLLNHVKKLD-KNPNAFLVYPCLYLSEEGS 136 (281)
T ss_pred cCHHHHHHHHHHH----cCCCEEEEEcCCee-eCHHHHHHHHHHHHHHh-cCCCceEEEeeeeccchhh
Confidence 3699999999985 69999999999997 79999999999321100 0123466667776654433
No 68
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=98.11 E-value=6.3e-05 Score=86.02 Aligned_cols=41 Identities=24% Similarity=0.322 Sum_probs=35.7
Q ss_pred CchhhhHHHHHhhccccCCCEEEEecCCCCCCchHHHHHHHHhhcC
Q 001382 550 KKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMD 595 (1089)
Q Consensus 550 ~KAGalNallrvSa~~tngp~Il~lDcD~~~~~p~~Lr~amcff~D 595 (1089)
.|++|+|++++. +.|++|+++|+|.. .+++.+.+.+-.+.+
T Consensus 149 G~~~A~~~Gi~~----a~gd~I~~~DaD~~-~~~~~l~~l~~~l~~ 189 (333)
T PTZ00260 149 GKGGAVRIGMLA----SRGKYILMVDADGA-TDIDDFDKLEDIMLK 189 (333)
T ss_pred ChHHHHHHHHHH----ccCCEEEEEeCCCC-CCHHHHHHHHHHHHH
Confidence 699999999985 58999999999997 799998888877653
No 69
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=98.02 E-value=2.9e-05 Score=87.88 Aligned_cols=51 Identities=16% Similarity=0.161 Sum_probs=42.6
Q ss_pred CCchhhhHHHHHhhccccCCCEEEEecCCCCCCchHHHHHHHHhhc-CCCCCceEEEEec
Q 001382 549 HKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMM-DPTSGKKICYVQF 607 (1089)
Q Consensus 549 h~KAGalNallrvSa~~tngp~Il~lDcD~~~~~p~~Lr~amcff~-Dp~~g~~v~~VQ~ 607 (1089)
..|++|+|.+++. ++|++|+.+|+|....+|++|.+.+..+. || ++++|..
T Consensus 101 ~Gkg~A~~~g~~~----a~gd~vv~lDaD~~~~~p~~l~~l~~~l~~~~----~~~~V~g 152 (306)
T PRK13915 101 PGKGEALWRSLAA----TTGDIVVFVDADLINFDPMFVPGLLGPLLTDP----GVHLVKA 152 (306)
T ss_pred CCHHHHHHHHHHh----cCCCEEEEEeCccccCCHHHHHHHHHHHHhCC----CceEEEE
Confidence 4699999999885 68999999999985468999999998775 77 5677764
No 70
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=98.02 E-value=0.00017 Score=81.04 Aligned_cols=68 Identities=19% Similarity=0.174 Sum_probs=47.9
Q ss_pred cEEEEeccCCCCCCCCCchhhhHHHHHhhccccCCC-EEEEecCCCCCCchHHHHHHHHhhc-CCCCCceEEEEecCccc
Q 001382 534 RLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAP-YLLNVDCDHYINNSKALREAMCFMM-DPTSGKKICYVQFPQRF 611 (1089)
Q Consensus 534 ~lvYvsRekrPg~~hh~KAGalNallrvSa~~tngp-~Il~lDcD~~~~~p~~Lr~amcff~-Dp~~g~~v~~VQ~PQ~F 611 (1089)
.+.|+.-.+.- .=||+.|.+++.. +.++. |++.|+-|.+ .++++|.+.+-.+. +| .++.|+.-.+.
T Consensus 57 ~v~~i~~~~Nl-----G~agg~n~g~~~a--~~~~~~~~l~LN~D~~-~~~~~l~~ll~~~~~~~----~~~~~~~~i~~ 124 (305)
T COG1216 57 NVRLIENGENL-----GFAGGFNRGIKYA--LAKGDDYVLLLNPDTV-VEPDLLEELLKAAEEDP----AAGVVGPLIRN 124 (305)
T ss_pred cEEEEEcCCCc-----cchhhhhHHHHHH--hcCCCcEEEEEcCCee-eChhHHHHHHHHHHhCC----CCeEeeeeEec
Confidence 35555554433 3588889887753 34544 9999999975 89999999998764 55 67888776665
Q ss_pred cC
Q 001382 612 DG 613 (1089)
Q Consensus 612 ~n 613 (1089)
++
T Consensus 125 ~~ 126 (305)
T COG1216 125 YD 126 (305)
T ss_pred CC
Confidence 43
No 71
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=97.29 E-value=0.0015 Score=74.49 Aligned_cols=41 Identities=12% Similarity=0.096 Sum_probs=36.1
Q ss_pred CCchhhhHHHHHhhccccCCCEEEEecCCCCCCchHHHHHHHHhhc
Q 001382 549 HKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMM 594 (1089)
Q Consensus 549 h~KAGalNallrvSa~~tngp~Il~lDcD~~~~~p~~Lr~amcff~ 594 (1089)
..|++|+|++++. +.|++|+.+|||.. .+|+.+.+.+-.+.
T Consensus 76 ~G~~~A~~~G~~~----A~gd~vv~~DaD~q-~~p~~i~~l~~~~~ 116 (325)
T PRK10714 76 YGQHSAIMAGFSH----VTGDLIITLDADLQ-NPPEEIPRLVAKAD 116 (325)
T ss_pred CCHHHHHHHHHHh----CCCCEEEEECCCCC-CCHHHHHHHHHHHH
Confidence 3689999999985 68999999999997 89999999988764
No 72
>KOG2547 consensus Ceramide glucosyltransferase [Lipid transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=97.16 E-value=0.0058 Score=70.17 Aligned_cols=159 Identities=28% Similarity=0.450 Sum_probs=107.4
Q ss_pred CCCchhhhHHHHHhhccccCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCceEEEE-ecCccccCCCccccccchhhh
Q 001382 548 HHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYV-QFPQRFDGIDRHDRYSNRNVV 626 (1089)
Q Consensus 548 hh~KAGalNallrvSa~~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~v~~V-Q~PQ~F~nid~~D~y~n~~~v 626 (1089)
-+-|-.||=-+.|. ...|+|++.|.|-. -.|+.+....-=||.|+ ++|+| |+|-.++-.-
T Consensus 155 ~npKInN~mpgy~~----a~ydlvlisDsgI~-m~pdtildm~t~M~she---kmalvtq~py~~dr~G----------- 215 (431)
T KOG2547|consen 155 LNPKINNMMPGYRA----AKYDLVLISDSGIF-MKPDTILDMATTMMSHE---KMALVTQTPYCKDRQG----------- 215 (431)
T ss_pred cChhhhccCHHHHH----hcCCEEEEecCCee-ecCchHHHHHHhhhccc---ceeeecCCceeecccc-----------
Confidence 34577777777775 68899999999998 59999998888888876 89998 7776654211
Q ss_pred hhhhhccccccCCCccccccccchhhhhhcCCCCCCCCCCCCCcCCCCCCcccccccccccccccCCCccCCcchhhhhh
Q 001382 627 FFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKPPRKTCNCLPKWCCCCCRSRKKSKKGKSNKKNKDTSKQIYA 706 (1089)
Q Consensus 627 Ffdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~ 706 (1089)
|+.-. ..+|.||. +-|--|-| +|-.+ .|.
T Consensus 216 -f~atl-------e~~~fgTs--h~r~yl~~--------------n~~~~---~c~------------------------ 244 (431)
T KOG2547|consen 216 -FDATL-------EQVYFGTS--HPRIYLSG--------------NVLGF---NCS------------------------ 244 (431)
T ss_pred -chhhh-------hheeeccC--CceEEEcc--------------ccccc---ccc------------------------
Confidence 11110 01344442 22222211 01000 111
Q ss_pred hhhhhhhccccccccCchhHHHhhhcCCchHHHHHHhHhhCCCCCCCChhhHHHHhHHhhcccccccCccccccCccccc
Q 001382 707 LENIEEGIEDNEKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGASTASLLNEAIHVISCGYEDKTDWGKEIGWIYGS 786 (1089)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~~~ea~~v~sc~YE~~T~WG~evGW~ygS 786 (1089)
-|-|...+++++.|.||+... | +.
T Consensus 245 -------------------------tgms~~mrK~~ld~~ggi~~f----------------------------~---~y 268 (431)
T KOG2547|consen 245 -------------------------TGMSSMMRKEALDECGGISAF----------------------------G---GY 268 (431)
T ss_pred -------------------------ccHHHHHHHHHHHHhccHHHH----------------------------H---HH
Confidence 156778889999999997541 1 38
Q ss_pred ccchHHHHHHHHhCCcEEEEecCCCCcccccCCCCHHHHHHhhheecc
Q 001382 787 VTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWAL 834 (1089)
Q Consensus 787 vTEDi~Tg~rLh~rGWrsvY~~p~~~Af~G~aP~tl~~~l~QR~RWA~ 834 (1089)
+.||+..+-.+..+||++.+.+- +|-.-.+-.+...+..|-.||..
T Consensus 269 LaedyFaaksllSRG~ksaist~--palQnSas~~mssf~~Ri~rwvk 314 (431)
T KOG2547|consen 269 LAEDYFAAKSLLSRGWKSAISTH--PALQNSASVTMSSFLDRIIRWVK 314 (431)
T ss_pred HHHHHHHHHHHHhhhhhhhhccc--chhhhhhhhHHHHHHHHHHHhhh
Confidence 89999999999999999999853 22245666788889999899975
No 73
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=96.87 E-value=0.0071 Score=64.89 Aligned_cols=42 Identities=12% Similarity=0.221 Sum_probs=36.3
Q ss_pred CchhhhHHHHHhhccccCCCEEEEecCCCCCCchHHHHHHHHhhcCC
Q 001382 550 KKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDP 596 (1089)
Q Consensus 550 ~KAGalNallrvSa~~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp 596 (1089)
..+.+.|.++.. ..+++|+.+|+|.. ..|+.+.+...++.++
T Consensus 58 g~~~~~n~~~~~----a~~d~vl~lDaD~~-~~~~~~~~l~~~~~~~ 99 (229)
T cd02511 58 GFGAQRNFALEL----ATNDWVLSLDADER-LTPELADEILALLATD 99 (229)
T ss_pred ChHHHHHHHHHh----CCCCEEEEEeCCcC-cCHHHHHHHHHHHhCC
Confidence 578999999884 67899999999998 6999999999887654
No 74
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.82 E-value=0.00055 Score=76.67 Aligned_cols=48 Identities=33% Similarity=1.018 Sum_probs=44.1
Q ss_pred cccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCCcccc
Q 001382 38 ICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRY 88 (1089)
Q Consensus 38 ~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Y 88 (1089)
.|..|=+++.++ ..-|.+| -|||.|||.||.--|.+=|+.||-|...|
T Consensus 16 ~cplcie~mdit--dknf~pc-~cgy~ic~fc~~~irq~lngrcpacrr~y 63 (480)
T COG5175 16 YCPLCIEPMDIT--DKNFFPC-PCGYQICQFCYNNIRQNLNGRCPACRRKY 63 (480)
T ss_pred cCcccccccccc--cCCcccC-CcccHHHHHHHHHHHhhccCCChHhhhhc
Confidence 699999998776 4469999 99999999999999999999999999999
No 75
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=96.80 E-value=0.0098 Score=57.22 Aligned_cols=45 Identities=22% Similarity=0.310 Sum_probs=39.5
Q ss_pred CCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCchhhh
Q 001382 365 LADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLT 415 (1089)
Q Consensus 365 lP~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~lt 415 (1089)
.|.+.|+|||+| |+ .....+|.|++...|+. ..+.|.|||.++-|
T Consensus 2 ~~~~siiip~~n---~~-~~l~~~l~s~~~q~~~~--~eiivvddgs~d~t 46 (291)
T COG0463 2 MPKVSVVIPTYN---EE-EYLPEALESLLNQTYKD--FEIIVVDDGSTDGT 46 (291)
T ss_pred CccEEEEEeccc---hh-hhHHHHHHHHHhhhhcc--eEEEEEeCCCCCCh
Confidence 578999999998 55 89999999999999996 55999999998743
No 76
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=95.82 E-value=0.0051 Score=52.88 Aligned_cols=46 Identities=35% Similarity=0.951 Sum_probs=38.4
Q ss_pred CccccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCC--Cccccc
Q 001382 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQ--CKTRYK 89 (1089)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~Cpq--Ckt~Yk 89 (1089)
+.+|.+||+.+- +|++.|.|.+|+=|.=|+||+++ +.|-- |++.+.
T Consensus 5 ~~~C~~Cg~~~~---~~dDiVvCp~CgapyHR~C~~~~-----g~C~~~~c~~~~~ 52 (54)
T PF14446_consen 5 GCKCPVCGKKFK---DGDDIVVCPECGAPYHRDCWEKA-----GGCINYSCGTGFE 52 (54)
T ss_pred CccChhhCCccc---CCCCEEECCCCCCcccHHHHhhC-----CceEeccCCCCcc
Confidence 568999999974 48889999999999999999887 66766 777663
No 77
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.56 E-value=0.013 Score=66.45 Aligned_cols=58 Identities=21% Similarity=0.463 Sum_probs=51.0
Q ss_pred CCccccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCCccccccccCC
Q 001382 35 SGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIKGS 94 (1089)
Q Consensus 35 ~~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Ykr~kgs 94 (1089)
..+.|.+|-.+..++.+=.+++. +||-..|+.|.+--.+.|.+.||+|++..++.+=.
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~--~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr 59 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVN--VCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFR 59 (309)
T ss_pred CCCCCCcCCCCCccCcccccccC--CCCCcccHHHHHHHhcCCCCCCCCCCCccchhhcc
Confidence 35799999999999988888888 99999999999888788999999999999876433
No 78
>PF02364 Glucan_synthase: 1,3-beta-glucan synthase component ; InterPro: IPR003440 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase 48 family GT48 from CAZY, which consists of various 1,3-beta-glucan synthase components including Gls1, Gls2 and Gls3 from yeast. 1,3-beta-glucan synthase (2.4.1.34 from EC) also known as callose synthase catalyses the formation of a beta-1,3-glucan polymer that is a major component of the fungal cell wall []. The reaction catalysed is:- UDP-glucose + {1,3-beta-D-glucosyl}(N) = UDP + {1,3-beta-D-glucosyl}(N+1).; GO: 0003843 1,3-beta-D-glucan synthase activity, 0006075 1,3-beta-D-glucan biosynthetic process, 0000148 1,3-beta-D-glucan synthase complex, 0016020 membrane
Probab=94.60 E-value=0.26 Score=62.38 Aligned_cols=73 Identities=25% Similarity=0.319 Sum_probs=51.2
Q ss_pred cccchHHHHHHHHhCCcEEEEecCCCCcccccCC-CCHHHHHHhhheecchhhHHHHhhccccccccCCCCCcccchhhh
Q 001382 786 SVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAP-INLSDRLHQVLRWALGSVEILLSRHCPIWYGYGCGLKPLERFSYI 864 (1089)
Q Consensus 786 SvTEDi~Tg~rLh~rGWrsvY~~p~~~Af~G~aP-~tl~~~l~QR~RWA~G~lQIl~sk~~Pl~~g~~k~L~~~QRL~Yl 864 (1089)
.++||+..|+....||-++.++ +-..+ |..- -.+..-+.=-..=+.|+-|..+||.--.+ +.+|.+..-|++.
T Consensus 409 hLsEDIfaG~n~~lRGG~i~h~-ey~qc--GKGRD~Gf~~I~~F~~KI~~G~GEQ~LSRe~yrL---g~~ld~~R~LSfy 482 (817)
T PF02364_consen 409 HLSEDIFAGMNATLRGGRIKHC-EYIQC--GKGRDVGFNSILNFETKIASGMGEQMLSREYYRL---GTRLDFFRFLSFY 482 (817)
T ss_pred cccHHHHHHHHHHhcCCceeeh-hhhhc--ccccccCchhhhhhHhHhcCCccchhhhHHHHHh---hccCCHHHHHHHH
Confidence 8899999999999999999999 44443 4433 23334444456678899988888753222 5678877666643
No 79
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=94.54 E-value=0.44 Score=55.25 Aligned_cols=41 Identities=22% Similarity=0.265 Sum_probs=34.5
Q ss_pred eEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCchh
Q 001382 369 DIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAM 413 (1089)
Q Consensus 369 DvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ 413 (1089)
-|+|.||| - |.-+..|+-|+++..+-.+...+||++||+..
T Consensus 3 PVlv~ayN---R-p~~l~r~LesLl~~~p~~~~~~liIs~DG~~~ 43 (334)
T cd02514 3 PVLVIACN---R-PDYLRRMLDSLLSYRPSAEKFPIIVSQDGGYE 43 (334)
T ss_pred CEEEEecC---C-HHHHHHHHHHHHhccccCCCceEEEEeCCCch
Confidence 47888886 4 68999999999998755567889999999875
No 80
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=89.09 E-value=0.26 Score=49.79 Aligned_cols=52 Identities=33% Similarity=0.798 Sum_probs=39.7
Q ss_pred ccccccCccccccCCCCccccCCC-CCCCcchhhHHHHHh--hcCCCCCCCcccccccc
Q 001382 37 QICQICGDEIEITDNGEPFVACNE-CAFPVCRPCYEYERR--EGNQACPQCKTRYKRIK 92 (1089)
Q Consensus 37 ~~C~iCgd~vg~~~~Ge~fvaC~e-C~fpvCrpCyeyerk--eG~~~CpqCkt~Ykr~k 92 (1089)
--|.||.|. ..-|-|.-=|| |||.||--||--=.| .-.-.||-|||-||..+
T Consensus 81 YeCnIC~et----S~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 81 YECNICKET----SAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred eeccCcccc----cchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence 469999875 33455766556 499999999976666 45589999999998653
No 81
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=88.78 E-value=0.4 Score=37.45 Aligned_cols=44 Identities=34% Similarity=0.825 Sum_probs=32.9
Q ss_pred cccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCCccc
Q 001382 38 ICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTR 87 (1089)
Q Consensus 38 ~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~ 87 (1089)
.|.||.+.. .+.+ ....|+-..|..|.+.-.+.++..||.|++.
T Consensus 1 ~C~iC~~~~-----~~~~-~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEF-----REPV-VLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhh-----hCce-EecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 488998886 2222 2234899999999987666678899999875
No 82
>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]
Probab=87.33 E-value=3.1 Score=44.76 Aligned_cols=53 Identities=15% Similarity=0.259 Sum_probs=37.4
Q ss_pred cEEEEeccCCCCCCCCCchhhhHHHHHhhccccCCCEEEEecCCCCCCchHHHHHHHHhhcCC
Q 001382 534 RLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDP 596 (1089)
Q Consensus 534 ~lvYvsRekrPg~~hh~KAGalNallrvSa~~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp 596 (1089)
++.-..|.+.-|.. -|--+.+.+ ..|+|+++.|||-- -.|+++-+.+....+-
T Consensus 64 ~i~l~pR~~klGLg-----tAy~hgl~~----a~g~fiviMDaDls-HhPk~ipe~i~lq~~~ 116 (238)
T KOG2978|consen 64 NILLKPRTKKLGLG-----TAYIHGLKH----ATGDFIVIMDADLS-HHPKFIPEFIRLQKEG 116 (238)
T ss_pred cEEEEeccCcccch-----HHHHhhhhh----ccCCeEEEEeCccC-CCchhHHHHHHHhhcc
Confidence 57777887744422 123334443 68999999999985 8999999888776654
No 83
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=80.10 E-value=1.8 Score=37.24 Aligned_cols=44 Identities=14% Similarity=0.110 Sum_probs=34.2
Q ss_pred cccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCCccccc
Q 001382 38 ICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1089)
Q Consensus 38 ~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Yk 89 (1089)
+|.||++-+ .+ +.+ -.||+-.||.|.+--.++ ++.||.|+.++.
T Consensus 3 ~Cpi~~~~~-~~----Pv~--~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~ 46 (63)
T smart00504 3 LCPISLEVM-KD----PVI--LPSGQTYERRAIEKWLLS-HGTDPVTGQPLT 46 (63)
T ss_pred CCcCCCCcC-CC----CEE--CCCCCEEeHHHHHHHHHH-CCCCCCCcCCCC
Confidence 699999863 22 333 378999999999887776 688999998773
No 84
>PHA02862 5L protein; Provisional
Probab=74.56 E-value=1.9 Score=44.33 Aligned_cols=50 Identities=30% Similarity=0.546 Sum_probs=32.5
Q ss_pred CccccccCccccccCCCCccccCCCC---CCCcchhhHHHH-HhhcCCCCCCCccccccc
Q 001382 36 GQICQICGDEIEITDNGEPFVACNEC---AFPVCRPCYEYE-RREGNQACPQCKTRYKRI 91 (1089)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC---~fpvCrpCyeye-rkeG~~~CpqCkt~Ykr~ 91 (1089)
+.+|-||-++ ++|..-+| .| -==|=+.|.+-= ...++..|+|||++|.-.
T Consensus 2 ~diCWIC~~~-----~~e~~~PC-~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik 55 (156)
T PHA02862 2 SDICWICNDV-----CDERNNFC-GCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIK 55 (156)
T ss_pred CCEEEEecCc-----CCCCcccc-cccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEE
Confidence 4689999886 23446788 44 112335565322 347889999999999643
No 85
>KOG2977 consensus Glycosyltransferase [General function prediction only]
Probab=74.31 E-value=17 Score=41.66 Aligned_cols=50 Identities=20% Similarity=0.147 Sum_probs=32.1
Q ss_pred ceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCC---CCcEEEEcCCCchhhhHH
Q 001382 367 DIDIFVSTVDPMKEPPLITANTVLSILAVDYPV---DKVACYVSDDGAAMLTFE 417 (1089)
Q Consensus 367 ~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~---~kl~~yvsDDG~s~ltf~ 417 (1089)
...|+||.||=.+-=+.+.-.|+-+ |.-.|-. =...+.|+|||...-|.+
T Consensus 68 ~lsVIVpaynE~~ri~~mldeav~~-le~ry~~~~~F~~eiiVvddgs~d~T~~ 120 (323)
T KOG2977|consen 68 YLSVIVPAYNEEGRIGAMLDEAVDY-LEKRYLSDKSFTYEIIVVDDGSTDSTVE 120 (323)
T ss_pred eeEEEEecCCcccchHHHHHHHHHH-HHHHhccCCCCceeEEEeCCCCchhHHH
Confidence 6889999999222224444455444 3334433 367799999999986554
No 86
>PHA02929 N1R/p28-like protein; Provisional
Probab=74.27 E-value=3.6 Score=45.81 Aligned_cols=55 Identities=20% Similarity=0.556 Sum_probs=39.5
Q ss_pred cCCccccccCccccccC-CCCccccCCCCCCCcchhhHHHHHhhcCCCCCCCccccc
Q 001382 34 LSGQICQICGDEIEITD-NGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1089)
Q Consensus 34 ~~~~~C~iCgd~vg~~~-~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Yk 89 (1089)
.....|.||.+.+.-++ ....+..=..|+=.-|+.|.. +-.+.++.||-|.+++.
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~-~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECID-IWKKEKNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHH-HHHhcCCCCCCCCCEee
Confidence 34679999999876443 111233334789999999995 45567899999999875
No 87
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=73.92 E-value=1.4 Score=55.42 Aligned_cols=24 Identities=25% Similarity=0.595 Sum_probs=16.9
Q ss_pred chhhHHHHHhhcCCCCCCCcccccc
Q 001382 66 CRPCYEYERREGNQACPQCKTRYKR 90 (1089)
Q Consensus 66 CrpCyeyerkeG~~~CpqCkt~Ykr 90 (1089)
|.-|- .+..+|..-||+|+++-..
T Consensus 30 Cp~CG-~~~~~~~~fC~~CG~~~~~ 53 (645)
T PRK14559 30 CPQCG-TEVPVDEAHCPNCGAETGT 53 (645)
T ss_pred CCCCC-CCCCcccccccccCCcccc
Confidence 44443 4467888999999988643
No 88
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=72.35 E-value=3.1 Score=45.81 Aligned_cols=46 Identities=35% Similarity=0.811 Sum_probs=37.4
Q ss_pred CccccccCccccccCCCCccccCCCCCCCcchhhHHHH---HhhcCCCCCCCccccc
Q 001382 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYE---RREGNQACPQCKTRYK 89 (1089)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeye---rkeG~~~CpqCkt~Yk 89 (1089)
---|.||=|.. =|+.|-| ||---|.||. |- ....++.||=||..-.
T Consensus 47 ~FdCNICLd~a-----kdPVvTl--CGHLFCWpCl-yqWl~~~~~~~~cPVCK~~Vs 95 (230)
T KOG0823|consen 47 FFDCNICLDLA-----KDPVVTL--CGHLFCWPCL-YQWLQTRPNSKECPVCKAEVS 95 (230)
T ss_pred ceeeeeecccc-----CCCEEee--cccceehHHH-HHHHhhcCCCeeCCccccccc
Confidence 34899997764 3578888 9999999998 76 5688899999998753
No 89
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=71.48 E-value=2.5 Score=34.30 Aligned_cols=43 Identities=35% Similarity=0.732 Sum_probs=33.3
Q ss_pred cccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCCc
Q 001382 38 ICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCK 85 (1089)
Q Consensus 38 ~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCk 85 (1089)
.|.||-+++.. ++..+... |+=-.|+.|.+-=.+. ++.||-|+
T Consensus 2 ~C~IC~~~~~~---~~~~~~l~-C~H~fh~~Ci~~~~~~-~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFED---GEKVVKLP-CGHVFHRSCIKEWLKR-NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHT---TSCEEEET-TSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred CCcCCChhhcC---CCeEEEcc-CCCeeCHHHHHHHHHh-CCcCCccC
Confidence 59999999755 67777774 9999999998654444 67999995
No 90
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=71.28 E-value=3.7 Score=44.32 Aligned_cols=53 Identities=28% Similarity=0.626 Sum_probs=36.1
Q ss_pred ccccCCccccccCccccccCCCCccccCCCCCCCcchhhHHHHHh---------------hcCCCCCCCcccccc
Q 001382 31 VKELSGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERR---------------EGNQACPQCKTRYKR 90 (1089)
Q Consensus 31 ~~~~~~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerk---------------eG~~~CpqCkt~Ykr 90 (1089)
+...+.-.|.||-|.+- ++.+ -.|+--.|++|-+.-.. .+...||-|++....
T Consensus 13 ~~~~~~~~CpICld~~~-----dPVv--T~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~ 80 (193)
T PLN03208 13 VDSGGDFDCNICLDQVR-----DPVV--TLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE 80 (193)
T ss_pred ccCCCccCCccCCCcCC-----CcEE--cCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence 44445569999999752 2333 26899999999963211 134689999998853
No 91
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=70.83 E-value=1.8 Score=37.81 Aligned_cols=46 Identities=30% Similarity=0.679 Sum_probs=34.1
Q ss_pred CccccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCCccccccc
Q 001382 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRI 91 (1089)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Ykr~ 91 (1089)
.|.|-.|+..-.. ..+.+ ||=-||+-|+.-||-.| ||=|+||+...
T Consensus 7 ~~~~~~~~~~~~~----~~~~p---CgH~I~~~~f~~~rYng---CPfC~~~~~~~ 52 (55)
T PF14447_consen 7 EQPCVFCGFVGTK----GTVLP---CGHLICDNCFPGERYNG---CPFCGTPFEFD 52 (55)
T ss_pred ceeEEEccccccc----ccccc---ccceeeccccChhhccC---CCCCCCcccCC
Confidence 4567677765222 13444 59999999999999888 99999999654
No 92
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=70.18 E-value=2.6 Score=35.15 Aligned_cols=27 Identities=41% Similarity=0.920 Sum_probs=21.4
Q ss_pred ccccccCccccccCCCCccccCCCCCCCc
Q 001382 37 QICQICGDEIEITDNGEPFVACNECAFPV 65 (1089)
Q Consensus 37 ~~C~iCgd~vg~~~~Ge~fvaC~eC~fpv 65 (1089)
-+|.-||.++.++.. .-+-|.+|++.|
T Consensus 3 Y~C~~Cg~~~~~~~~--~~irC~~CG~rI 29 (44)
T smart00659 3 YICGECGRENEIKSK--DVVRCRECGYRI 29 (44)
T ss_pred EECCCCCCEeecCCC--CceECCCCCceE
Confidence 379999999888733 348899999876
No 93
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=70.01 E-value=3.7 Score=42.92 Aligned_cols=51 Identities=27% Similarity=0.499 Sum_probs=35.1
Q ss_pred CCccccccCccccccCCCCccccCCCCCC---CcchhhHHHHH-hhcCCCCCCCccccccc
Q 001382 35 SGQICQICGDEIEITDNGEPFVACNECAF---PVCRPCYEYER-REGNQACPQCKTRYKRI 91 (1089)
Q Consensus 35 ~~~~C~iCgd~vg~~~~Ge~fvaC~eC~f---pvCrpCyeyer-keG~~~CpqCkt~Ykr~ 91 (1089)
.+..|.||-++- ++..-+| .|.= -|=+.|-+-=. ..|+..|++|+++|+-.
T Consensus 7 ~~~~CRIC~~~~-----~~~~~PC-~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~ 61 (162)
T PHA02825 7 MDKCCWICKDEY-----DVVTNYC-NCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIK 61 (162)
T ss_pred CCCeeEecCCCC-----CCccCCc-ccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEE
Confidence 466999997662 2345688 5633 34567876543 35789999999999755
No 94
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=69.54 E-value=3.3 Score=32.34 Aligned_cols=26 Identities=38% Similarity=1.004 Sum_probs=18.9
Q ss_pred cccccCccccccCCCCccccCCCCCCCc
Q 001382 38 ICQICGDEIEITDNGEPFVACNECAFPV 65 (1089)
Q Consensus 38 ~C~iCgd~vg~~~~Ge~fvaC~eC~fpv 65 (1089)
+|.-||.++.+.. ++ -+.|.+||+.|
T Consensus 2 ~C~~Cg~~~~~~~-~~-~irC~~CG~RI 27 (32)
T PF03604_consen 2 ICGECGAEVELKP-GD-PIRCPECGHRI 27 (32)
T ss_dssp BESSSSSSE-BST-SS-TSSBSSSS-SE
T ss_pred CCCcCCCeeEcCC-CC-cEECCcCCCeE
Confidence 6899999999664 33 37999999875
No 95
>KOG0916 consensus 1,3-beta-glucan synthase/callose synthase catalytic subunit [Cell wall/membrane/envelope biogenesis]
Probab=68.86 E-value=40 Score=45.62 Aligned_cols=83 Identities=23% Similarity=0.297 Sum_probs=49.0
Q ss_pred cccchHHHHHHHHhCCcEEEEecCCCCcccccCC-CCHHHHHHhhheecchhhHHHHhhccccccccCCCCCcccchhhh
Q 001382 786 SVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAP-INLSDRLHQVLRWALGSVEILLSRHCPIWYGYGCGLKPLERFSYI 864 (1089)
Q Consensus 786 SvTEDi~Tg~rLh~rGWrsvY~~p~~~Af~G~aP-~tl~~~l~QR~RWA~G~lQIl~sk~~Pl~~g~~k~L~~~QRL~Yl 864 (1089)
.++||+..|+....||-++.+| +-..+ |..- -.+..-..=-..=|.|+-|-.+||.- |-++.++.+..-|.+.
T Consensus 1173 nlsEDIfAG~n~tlRgG~itH~-EYiQv--GKGRDvGlnqI~~FeaKia~G~GEQ~LSRd~---YrLG~~ldffRmLSfy 1246 (1679)
T KOG0916|consen 1173 NLSEDIFAGFNATLRGGNITHH-EYIQV--GKGRDVGLNQISNFEAKIANGNGEQTLSRDY---YRLGTQLDFFRMLSFY 1246 (1679)
T ss_pred ccchHhhhhhhHHhhCCCcccc-eeeec--ccccccCcchhhhhhhhhcCCCcchhhhHHH---HHhcccccHHHHHHHH
Confidence 7899999999999999999888 42332 2221 11112222223558888888888742 2235567776666533
Q ss_pred h-hhhhHhHHH
Q 001382 865 N-SVVYPITSI 874 (1089)
Q Consensus 865 ~-~~ly~l~sl 874 (1089)
. +.-+++.++
T Consensus 1247 ftt~GF~~n~m 1257 (1679)
T KOG0916|consen 1247 FTTVGFYFNNM 1257 (1679)
T ss_pred hccccHHHHhH
Confidence 3 333444443
No 96
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=66.19 E-value=3.4 Score=47.05 Aligned_cols=45 Identities=33% Similarity=0.896 Sum_probs=37.3
Q ss_pred cCCCCccccCCCCCCCc--------ch--hhHHHHHhhcCCCCCCCccccccccC
Q 001382 49 TDNGEPFVACNECAFPV--------CR--PCYEYERREGNQACPQCKTRYKRIKG 93 (1089)
Q Consensus 49 ~~~Ge~fvaC~eC~fpv--------Cr--pCyeyerkeG~~~CpqCkt~Ykr~kg 93 (1089)
..+|+..--|..|+||| |+ .|||-+|.|-.+.||.|..|-.|..-
T Consensus 84 k~l~p~VHfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~~dK~Cp~C~d~VqrIeq 138 (389)
T KOG2932|consen 84 KQLGPRVHFCDRCDFPIAIYGRMIPCKHVFCLECARSDSDKICPLCDDRVQRIEQ 138 (389)
T ss_pred cccCcceEeecccCCcceeeecccccchhhhhhhhhcCccccCcCcccHHHHHHH
Confidence 34566667799999998 54 69999999999999999999988743
No 97
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=64.87 E-value=5.9 Score=29.58 Aligned_cols=39 Identities=38% Similarity=0.935 Sum_probs=27.3
Q ss_pred ccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCC
Q 001382 39 CQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQC 84 (1089)
Q Consensus 39 C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqC 84 (1089)
|.||.+. .....+ -.|+.-.|..|.+.-.+.++..||.|
T Consensus 1 C~iC~~~-----~~~~~~--~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEE-----LKDPVV--LPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccC-----CCCcEE--ecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 6788777 112211 25788899999976666677889987
No 98
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=64.86 E-value=4.8 Score=46.45 Aligned_cols=52 Identities=29% Similarity=0.826 Sum_probs=43.3
Q ss_pred CccccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCCccccccc
Q 001382 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRI 91 (1089)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Ykr~ 91 (1089)
...|.||++.. +.+--.|++| -|+|-+|-+|-- -.-+++..||.|.++|++.
T Consensus 249 ~~s~p~~~~~~--~~~d~~~lP~-~~~~~~~l~~~~-t~~~~~~~~~~~rk~~~~~ 300 (327)
T KOG2068|consen 249 PPSCPICYEDL--DLTDSNFLPC-PCGFRLCLFCHK-TISDGDGRCPGCRKPYERN 300 (327)
T ss_pred CCCCCCCCCcc--cccccccccc-cccccchhhhhh-cccccCCCCCccCCccccC
Confidence 36899999985 4445579999 999999999994 3479999999999999764
No 99
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=61.79 E-value=26 Score=38.24 Aligned_cols=49 Identities=27% Similarity=0.390 Sum_probs=38.6
Q ss_pred CCchhhhHHHHHhhccccCCCEEEEecCCCCCCchHHHHHHHHhh-cCCCCCceEEEE
Q 001382 549 HKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFM-MDPTSGKKICYV 605 (1089)
Q Consensus 549 h~KAGalNallrvSa~~tngp~Il~lDcD~~~~~p~~Lr~amcff-~Dp~~g~~v~~V 605 (1089)
..-|-+.|++++. +.++|++.+.=|-.+.+++++.+++-.| .|| ++|.|
T Consensus 40 ~s~~~~yN~a~~~----a~~~ylvflHqDv~i~~~~~l~~il~~~~~~~----~~G~i 89 (217)
T PF13712_consen 40 KSMAAAYNEAMEK----AKAKYLVFLHQDVFIINENWLEDILEIFEEDP----NIGMI 89 (217)
T ss_dssp S-TTTHHHHHGGG------SSEEEEEETTEE-SSHHHHHHHHHHHHH-T----TEEEE
T ss_pred cCHHHHHHHHHHh----CCCCEEEEEeCCeEEcchhHHHHHHHHHhhCC----CccEE
Confidence 4578899999985 7999999999999999999999999988 999 55544
No 100
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=61.59 E-value=5.7 Score=45.07 Aligned_cols=53 Identities=23% Similarity=0.564 Sum_probs=43.8
Q ss_pred ccccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCCccccccc
Q 001382 37 QICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRI 91 (1089)
Q Consensus 37 ~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Ykr~ 91 (1089)
+.|.+|--++-++.+ ++.-=|||+.+.|-.|..-=-.-|...||.|.+.-+.-
T Consensus 1 ~~Cp~CKt~~Y~np~--lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~ 53 (300)
T KOG3800|consen 1 QACPKCKTDRYLNPD--LKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKN 53 (300)
T ss_pred CCCcccccceecCcc--ceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhc
Confidence 358888888888755 55556699999999999777778999999999988754
No 101
>PF03966 Trm112p: Trm112p-like protein; InterPro: IPR005651 This family of short proteins have no known function. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The function of this family is uncertain. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The entry contains 2 families: Trm112, which is required for tRNA methylation in Saccharomyces cerevisiae (Baker's yeast) and is found in complexes with 2 tRNA methylases (TRM9 and TRM11) also with putative methyltransferase YDR140W []. The zinc-finger protein Ynr046w is plurifunctional and a component of the eRF1 methyltransferase in yeast []. The crystal structure of Ynr046w has been determined to 1.7 A resolution. It comprises a zinc-binding domain built from both the N- and C-terminal sequences and an inserted domain, absent from bacterial and archaeal orthologs of the protein, composed of three alpha-helices []. UPF0434, which are proteins that are functionally uncharacterised. ; PDB: 3Q87_A 2KPI_A 2K5R_A 2HF1_A 2JS4_A 2J6A_A 2JR6_A 2PK7_A 2JNY_A.
Probab=61.31 E-value=1.3 Score=39.78 Aligned_cols=26 Identities=31% Similarity=0.539 Sum_probs=21.6
Q ss_pred hhhHHHHHhhcCCCCCCCcccccccc
Q 001382 67 RPCYEYERREGNQACPQCKTRYKRIK 92 (1089)
Q Consensus 67 rpCyeyerkeG~~~CpqCkt~Ykr~k 92 (1089)
+-|+|++..||.=.||+|+..|--.+
T Consensus 42 ~~l~~~~i~eg~L~Cp~c~r~YPI~d 67 (68)
T PF03966_consen 42 HVLLEVEIVEGELICPECGREYPIRD 67 (68)
T ss_dssp EHHCTEETTTTEEEETTTTEEEEEET
T ss_pred hhhhcccccCCEEEcCCCCCEEeCCC
Confidence 45777889999999999999996543
No 102
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=60.56 E-value=6.6 Score=44.91 Aligned_cols=63 Identities=30% Similarity=0.752 Sum_probs=45.4
Q ss_pred ccccCCccccc--cCccccccCCCCccccCCC-CCCCcchhhHH-----------------------HH-----------
Q 001382 31 VKELSGQICQI--CGDEIEITDNGEPFVACNE-CAFPVCRPCYE-----------------------YE----------- 73 (1089)
Q Consensus 31 ~~~~~~~~C~i--Cgd~vg~~~~Ge~fvaC~e-C~fpvCrpCye-----------------------ye----------- 73 (1089)
+.+..|-.|.- ||..+-...| +--|.|.. |+|-.||.|.| +|
T Consensus 310 vlq~gGVlCP~pgCG~gll~EPD-~rkvtC~~gCgf~FCR~C~e~yh~geC~~~~~as~t~tc~y~vde~~a~~arwd~a 388 (446)
T KOG0006|consen 310 VLQMGGVLCPRPGCGAGLLPEPD-QRKVTCEGGCGFAFCRECKEAYHEGECSAVFEASGTTTCAYRVDERAAEQARWDAA 388 (446)
T ss_pred eeecCCEecCCCCCCcccccCCC-CCcccCCCCchhHhHHHHHhhhccccceeeeccccccceeeecChhhhhhhhhhhh
Confidence 45667889986 9987655442 23588877 99999999998 23
Q ss_pred ----HhhcCCCCCCCccccccccCC
Q 001382 74 ----RREGNQACPQCKTRYKRIKGS 94 (1089)
Q Consensus 74 ----rkeG~~~CpqCkt~Ykr~kgs 94 (1089)
.|-.+.-||.|.++-.|.-|+
T Consensus 389 s~~TIk~tTkpCPkChvptErnGGC 413 (446)
T KOG0006|consen 389 SKETIKKTTKPCPKCHVPTERNGGC 413 (446)
T ss_pred hhhhhhhccCCCCCccCccccCCce
Confidence 233567788888888776655
No 103
>PRK00420 hypothetical protein; Validated
Probab=57.84 E-value=4.1 Score=40.48 Aligned_cols=29 Identities=28% Similarity=0.675 Sum_probs=22.7
Q ss_pred ccCCCCCCCcchhhHHHHHhhcCCCCCCCcccccc
Q 001382 56 VACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (1089)
Q Consensus 56 vaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Ykr 90 (1089)
-.|.+|++|.= +-++|.-.||.|++.+.-
T Consensus 24 ~~CP~Cg~pLf------~lk~g~~~Cp~Cg~~~~v 52 (112)
T PRK00420 24 KHCPVCGLPLF------ELKDGEVVCPVHGKVYIV 52 (112)
T ss_pred CCCCCCCCcce------ecCCCceECCCCCCeeee
Confidence 46888888862 338899999999998864
No 104
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=55.60 E-value=8.1 Score=30.60 Aligned_cols=40 Identities=30% Similarity=0.693 Sum_probs=30.0
Q ss_pred ccccCccccccCCCCccccCCCCCCCcchhhHHHHHh-hcCCCCCCC
Q 001382 39 CQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERR-EGNQACPQC 84 (1089)
Q Consensus 39 C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerk-eG~~~CpqC 84 (1089)
|.||.+...... -=.+|+=..|+.|.+--.+ .++..||.|
T Consensus 1 C~iC~~~~~~~~------~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPV------ILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEE------EETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCC------EEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 778887644322 2346799999999987766 788899988
No 105
>PF14471 DUF4428: Domain of unknown function (DUF4428)
Probab=53.99 E-value=7 Score=33.56 Aligned_cols=28 Identities=25% Similarity=0.772 Sum_probs=18.2
Q ss_pred cccccCccccccCCCCccccCCCCCCCcchhhHH
Q 001382 38 ICQICGDEIEITDNGEPFVACNECAFPVCRPCYE 71 (1089)
Q Consensus 38 ~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCye 71 (1089)
.|.|||+++|+... .-+. =+| ||..|++
T Consensus 1 ~C~iCg~kigl~~~--~k~~---DG~-iC~~C~~ 28 (51)
T PF14471_consen 1 KCAICGKKIGLFKR--FKIK---DGY-ICKDCLK 28 (51)
T ss_pred CCCccccccccccc--eecc---Ccc-chHHHHH
Confidence 59999999998653 1111 123 7788874
No 106
>PRK15103 paraquat-inducible membrane protein A; Provisional
Probab=53.60 E-value=10 Score=45.63 Aligned_cols=31 Identities=19% Similarity=0.533 Sum_probs=22.9
Q ss_pred CccccCCCCCCCcchhhHHHHHhhcCCCCCCCcccccccc
Q 001382 53 EPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIK 92 (1089)
Q Consensus 53 e~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Ykr~k 92 (1089)
+.-++|++|+.-+ ..+...||+|+++-.|++
T Consensus 219 ~~l~~C~~Cd~l~---------~~~~a~CpRC~~~L~~~~ 249 (419)
T PRK15103 219 QGLRSCSCCTAIL---------PADQPVCPRCHTKGYVRR 249 (419)
T ss_pred cCCCcCCCCCCCC---------CCCCCCCCCCCCcCcCCC
Confidence 3467899999864 234458999999986653
No 107
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=53.09 E-value=10 Score=30.07 Aligned_cols=39 Identities=38% Similarity=0.920 Sum_probs=27.5
Q ss_pred ccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCC
Q 001382 39 CQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQC 84 (1089)
Q Consensus 39 C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqC 84 (1089)
|.||-|...- +++.- .||--.|+.|.+--.+. +..||.|
T Consensus 1 C~iC~~~~~~-----~~~~~-~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD-----PVVVT-PCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS-----EEEEC-TTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccC-----cCEEC-CCCCchhHHHHHHHHHC-cCCCcCC
Confidence 7788665322 43433 78999999999776666 7999988
No 108
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=52.86 E-value=1.5 Score=43.52 Aligned_cols=47 Identities=28% Similarity=0.714 Sum_probs=33.9
Q ss_pred CCccccccCccccccC-CCCccccCCCCCCCcchhhHHHHHhhcCCCCCCC
Q 001382 35 SGQICQICGDEIEITD-NGEPFVACNECAFPVCRPCYEYERREGNQACPQC 84 (1089)
Q Consensus 35 ~~~~C~iCgd~vg~~~-~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqC 84 (1089)
+...|.+|+...|+-. .| ..|..|...||+.|-.|-.+++-=.|-=|
T Consensus 53 ~~~~C~~C~~~fg~l~~~~---~~C~~C~~~VC~~C~~~~~~~~~WlC~vC 100 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRG---RVCVDCKHRVCKKCGVYSKKEPIWLCKVC 100 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTC---EEETTTTEEEETTSEEETSSSCCEEEHHH
T ss_pred CCcchhhhCCcccccCCCC---CcCCcCCccccCccCCcCCCCCCEEChhh
Confidence 6679999999988764 35 88999999999999977444444455544
No 109
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=52.60 E-value=10 Score=31.70 Aligned_cols=45 Identities=22% Similarity=0.582 Sum_probs=32.2
Q ss_pred cccccCccccccCCCCccccCCCCCCC-cchhhHHHHHhhcCCCCCCCcccccc
Q 001382 38 ICQICGDEIEITDNGEPFVACNECAFP-VCRPCYEYERREGNQACPQCKTRYKR 90 (1089)
Q Consensus 38 ~C~iCgd~vg~~~~Ge~fvaC~eC~fp-vCrpCyeyerkeG~~~CpqCkt~Ykr 90 (1089)
.|.||.+..-. -.+.+ |+=- +|..|++--++ .+..||-|+++.++
T Consensus 4 ~C~iC~~~~~~----~~~~p---CgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 4 ECPICFENPRD----VVLLP---CGHLCFCEECAERLLK-RKKKCPICRQPIES 49 (50)
T ss_dssp B-TTTSSSBSS----EEEET---TCEEEEEHHHHHHHHH-TTSBBTTTTBB-SE
T ss_pred CCccCCccCCc----eEEeC---CCChHHHHHHhHHhcc-cCCCCCcCChhhcC
Confidence 69999987321 23444 5777 99999976666 77999999998764
No 110
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=52.02 E-value=4.6 Score=46.10 Aligned_cols=36 Identities=33% Similarity=0.886 Sum_probs=26.9
Q ss_pred cccccCccccccCCCCccccCCCC-CCCcchhhHHHHHhhc
Q 001382 38 ICQICGDEIEITDNGEPFVACNEC-AFPVCRPCYEYERREG 77 (1089)
Q Consensus 38 ~C~iCgd~vg~~~~Ge~fvaC~eC-~fpvCrpCyeyerkeG 77 (1089)
-|.+|--++- .-.|+.|+|| +|-.|-||+---..-|
T Consensus 7 hCdvC~~d~T----~~~~i~C~eC~~~DLC~pCF~~g~~tg 43 (432)
T COG5114 7 HCDVCFLDMT----DLTFIKCNECPAVDLCLPCFVNGIETG 43 (432)
T ss_pred eehHHHHhhh----cceeeeeecccccceehhhhhcccccc
Confidence 5888876643 4479999999 9999999995333333
No 111
>PRK12495 hypothetical protein; Provisional
Probab=50.96 E-value=8.3 Score=42.34 Aligned_cols=30 Identities=30% Similarity=0.847 Sum_probs=22.2
Q ss_pred ccccCCCCCCCcchhhHHHHHhhcCCCCCCCcccccc
Q 001382 54 PFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (1089)
Q Consensus 54 ~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Ykr 90 (1089)
.-.-|.+|+.||= +..|...||-|.+.+.+
T Consensus 41 sa~hC~~CG~PIp-------a~pG~~~Cp~CQ~~~~~ 70 (226)
T PRK12495 41 TNAHCDECGDPIF-------RHDGQEFCPTCQQPVTE 70 (226)
T ss_pred chhhcccccCccc-------CCCCeeECCCCCCcccc
Confidence 3445666766664 45899999999999964
No 112
>KOG3737 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=49.77 E-value=52 Score=39.20 Aligned_cols=47 Identities=17% Similarity=0.068 Sum_probs=36.8
Q ss_pred CCCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCC
Q 001382 361 KPSDLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDG 410 (1089)
Q Consensus 361 ~~~~lP~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG 410 (1089)
-|.+||++.|+|.-.| |--...+.||-|++.-.=|.=--.|.+.||=
T Consensus 150 Ype~Lpt~SVviVFHN---EGws~LmRTVHSVi~RsP~~~l~eivlvDDf 196 (603)
T KOG3737|consen 150 YPENLPTSSVVIVFHN---EGWSTLMRTVHSVIKRSPRKYLAEIVLVDDF 196 (603)
T ss_pred CcccCCcceEEEEEec---CccHHHHHHHHHHHhcCcHHhhheEEEeccC
Confidence 4678999999999998 9999999999999876544323346667763
No 113
>PHA02926 zinc finger-like protein; Provisional
Probab=49.49 E-value=19 Score=39.83 Aligned_cols=62 Identities=26% Similarity=0.544 Sum_probs=43.0
Q ss_pred ccCCccccccCccccccC--CCCccccCCCCCCCcchhhHHHHHhh-----cCCCCCCCccccccccCC
Q 001382 33 ELSGQICQICGDEIEITD--NGEPFVACNECAFPVCRPCYEYERRE-----GNQACPQCKTRYKRIKGS 94 (1089)
Q Consensus 33 ~~~~~~C~iCgd~vg~~~--~Ge~fvaC~eC~fpvCrpCyeyerke-----G~~~CpqCkt~Ykr~kgs 94 (1089)
......|.||=+.|--.. +...|--=..|+-.-|..|..--|+. +...||.|.++++...=|
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~pS 235 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNITMS 235 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeeeccc
Confidence 345579999999875432 22223333467889999999776653 246799999999876544
No 114
>PRK04023 DNA polymerase II large subunit; Validated
Probab=48.08 E-value=12 Score=48.80 Aligned_cols=45 Identities=24% Similarity=0.614 Sum_probs=32.9
Q ss_pred cCCccccccCccccccCCCCccccCCCCCC-----CcchhhHHHHHhhc-CCCCCCCccccc
Q 001382 34 LSGQICQICGDEIEITDNGEPFVACNECAF-----PVCRPCYEYERREG-NQACPQCKTRYK 89 (1089)
Q Consensus 34 ~~~~~C~iCgd~vg~~~~Ge~fvaC~eC~f-----pvCrpCyeyerkeG-~~~CpqCkt~Yk 89 (1089)
.....|.-||... ....|.+||= ..|..| ++.+ .-.||.|++.-+
T Consensus 624 Vg~RfCpsCG~~t-------~~frCP~CG~~Te~i~fCP~C----G~~~~~y~CPKCG~El~ 674 (1121)
T PRK04023 624 IGRRKCPSCGKET-------FYRRCPFCGTHTEPVYRCPRC----GIEVEEDECEKCGREPT 674 (1121)
T ss_pred ccCccCCCCCCcC-------CcccCCCCCCCCCcceeCccc----cCcCCCCcCCCCCCCCC
Confidence 4566999999983 5578999984 368888 4433 367999998654
No 115
>TIGR00155 pqiA_fam integral membrane protein, PqiA family. This family consists of uncharacterized predicted integral membrane proteins found, so far, only in the Proteobacteria. Of two members in E. coli, one is induced by paraquat and is designated PqiA, paraquat-inducible protein A.
Probab=47.89 E-value=11 Score=45.01 Aligned_cols=30 Identities=20% Similarity=0.541 Sum_probs=21.0
Q ss_pred ccccCCCCCCCcchhhHHHHHhhcCCCCCCCccccccc
Q 001382 54 PFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRI 91 (1089)
Q Consensus 54 ~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Ykr~ 91 (1089)
.-++|++|+..+ . ......||+|++.--|.
T Consensus 214 ~~~~C~~Cd~~~-~-------~~~~a~CpRC~~~L~~~ 243 (403)
T TIGR00155 214 KLRSCSACHTTI-L-------PAQEPVCPRCSTPLYVR 243 (403)
T ss_pred CCCcCCCCCCcc-C-------CCCCcCCcCCCCcccCC
Confidence 367899999866 1 23346799999986444
No 116
>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein. Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3].
Probab=47.58 E-value=12 Score=30.81 Aligned_cols=37 Identities=27% Similarity=0.836 Sum_probs=27.9
Q ss_pred CccccccCccccccCCCCccccCCCC-CCCcchhhHHHHHhhc
Q 001382 36 GQICQICGDEIEITDNGEPFVACNEC-AFPVCRPCYEYERREG 77 (1089)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC-~fpvCrpCyeyerkeG 77 (1089)
...|..|+..+ .|.-| .|.+| .|-+|..||..-+..+
T Consensus 4 ~~~C~~C~~~i----~g~ry-~C~~C~d~dlC~~Cf~~~~~~~ 41 (44)
T smart00291 4 SYSCDTCGKPI----VGVRY-HCLVCPDYDLCQSCFAKGSAGG 41 (44)
T ss_pred CcCCCCCCCCC----cCCEE-ECCCCCCccchHHHHhCcCcCC
Confidence 45799999843 36666 79999 9999999997544443
No 117
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=47.03 E-value=3.4e+02 Score=32.01 Aligned_cols=18 Identities=22% Similarity=0.601 Sum_probs=13.5
Q ss_pred hccCCcccccccchhhhh
Q 001382 921 QWGGVGIHDWWRNEQFWV 938 (1089)
Q Consensus 921 ~wsG~s~~~wWrne~~W~ 938 (1089)
+-.|-+++.||....|+-
T Consensus 173 ~~NGS~Ik~WW~~HHy~s 190 (330)
T PF07851_consen 173 IVNGSRIKGWWVFHHYIS 190 (330)
T ss_pred ccCCCcchHHHHHHHHHH
Confidence 345778899998888774
No 118
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF11077 DUF2616: Protein of unknown function (DUF2616); InterPro: IPR020201 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf52; it is a family of uncharacterised viral proteins.
Probab=45.64 E-value=7.2 Score=41.49 Aligned_cols=35 Identities=31% Similarity=0.931 Sum_probs=26.1
Q ss_pred ccccCccccccCCCCccccCCCCCCCc-chh--------------hHHHHHhhcC
Q 001382 39 CQICGDEIEITDNGEPFVACNECAFPV-CRP--------------CYEYERREGN 78 (1089)
Q Consensus 39 C~iCgd~vg~~~~Ge~fvaC~eC~fpv-Crp--------------CyeyerkeG~ 78 (1089)
|+-|... .+.+.-..|+.|-||+ |-. || ||..+++
T Consensus 55 C~fC~~~----~~~~~~~~C~~CfFPl~c~~~~~eEla~Y~LLSVCy-~E~~~~~ 104 (173)
T PF11077_consen 55 CDFCYAV----NTETDRLFCKQCFFPLYCTNGIDEELATYCLLSVCY-WESNEDS 104 (173)
T ss_pred hhHHHhc----ccchhHHHHHhccccccccccchHHHHHHHHHHHHH-hhccccc
Confidence 9999876 2344578999999999 654 77 7766654
No 120
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=45.56 E-value=9.2 Score=44.92 Aligned_cols=69 Identities=23% Similarity=0.524 Sum_probs=44.9
Q ss_pred CCccccccCccccccCCCCccccCCCCCCCcc-hhhHHHHHhhcCCCCCCCcccc---cc--ccCCCCCCCCCCCCCc
Q 001382 35 SGQICQICGDEIEITDNGEPFVACNECAFPVC-RPCYEYERREGNQACPQCKTRY---KR--IKGSPRVDGDEEEDDT 106 (1089)
Q Consensus 35 ~~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvC-rpCyeyerkeG~~~CpqCkt~Y---kr--~kgsprv~gd~ee~~~ 106 (1089)
-+--|..||+.+|+...----.+|-. -.= |==|||--+.|.+.||-|..-- || .-|||.|+.+-++-++
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsH---IfH~rCl~e~L~~n~~rsCP~CrklrSs~~rpgfvgs~~Vesest~~~v 438 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSH---IFHLRCLQEILENNGTRSCPNCRKLRSSMKRPGFVGSVPVESESTDRCV 438 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhH---HHHHHHHHHHHHhCCCCCCccHHHHHhhccCCCCcCCCccccccccccc
Confidence 35589999999999865444555521 111 1126777899999999998322 22 2378888877555444
No 121
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=45.44 E-value=13 Score=30.90 Aligned_cols=27 Identities=33% Similarity=0.867 Sum_probs=17.2
Q ss_pred cccccCccccccCCCCccccCCCCCCCc
Q 001382 38 ICQICGDEIEITDNGEPFVACNECAFPV 65 (1089)
Q Consensus 38 ~C~iCgd~vg~~~~Ge~fvaC~eC~fpv 65 (1089)
.|+-||..+..+++.. -+-|..|+.++
T Consensus 5 ~C~~CG~~~~~~~~~~-~~~Cp~CG~~~ 31 (46)
T PRK00398 5 KCARCGREVELDEYGT-GVRCPYCGYRI 31 (46)
T ss_pred ECCCCCCEEEECCCCC-ceECCCCCCeE
Confidence 6788888777766544 34566665554
No 122
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=44.64 E-value=6.5 Score=38.90 Aligned_cols=27 Identities=22% Similarity=0.571 Sum_probs=18.3
Q ss_pred cccCCCCCCCcchhhHHHHHhhcCCCCCCCcccc
Q 001382 55 FVACNECAFPVCRPCYEYERREGNQACPQCKTRY 88 (1089)
Q Consensus 55 fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Y 88 (1089)
-.-|+.|+ ++++..+-.-.||+|+.+=
T Consensus 70 ~~~C~~Cg-------~~~~~~~~~~~CP~Cgs~~ 96 (113)
T PRK12380 70 QAWCWDCS-------QVVEIHQHDAQCPHCHGER 96 (113)
T ss_pred EEEcccCC-------CEEecCCcCccCcCCCCCC
Confidence 35577776 4566655556799999753
No 123
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=44.15 E-value=9.6 Score=45.42 Aligned_cols=58 Identities=26% Similarity=0.615 Sum_probs=38.5
Q ss_pred CccccccCccccccCCCCccccCCCCC-CCcchhhHHHHHhhcCCCCCCCccccccccC--CCCCCCC
Q 001382 36 GQICQICGDEIEITDNGEPFVACNECA-FPVCRPCYEYERREGNQACPQCKTRYKRIKG--SPRVDGD 100 (1089)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~-fpvCrpCyeyerkeG~~~CpqCkt~Ykr~kg--sprv~gd 100 (1089)
...|-.|..+| +|-.+|-|.||. |-+|-+|+---..-|.. ||.-+|+-.+. .|.+.+|
T Consensus 14 ky~C~~C~~di----t~~i~ikCaeCp~fdLCl~CFs~GaE~~~H---~~~H~Yrim~~~s~~i~~~~ 74 (438)
T KOG0457|consen 14 KYNCDYCSLDI----TGLIRIKCAECPDFDLCLQCFSVGAETGKH---QNDHPYRIMDTNSFPILDPS 74 (438)
T ss_pred CCCCccHhHHh----ccceEEEeecCCCcchhHHHHhcccccCCC---CCCCCceeecCCCCCCCCCC
Confidence 34899999875 367899999998 99999999322222222 44456655543 4555555
No 124
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=41.95 E-value=1.3e+02 Score=32.87 Aligned_cols=61 Identities=13% Similarity=0.256 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccch--hhHHHHHHHHHHHHHHHHHHHHhhc-CCCCcchh
Q 001382 991 PLTLLVFNLIGVIIGVADAISNGYETWG--PLFGKLFFSLWVILHLYPFLKGFLG-KQDRLPTI 1051 (1089)
Q Consensus 991 ~~~Llilnliaiv~Gi~r~i~~~~~~wg--~l~g~l~~~~Wvl~~l~Pfl~gL~g-R~~~~P~~ 1051 (1089)
=..|+++.+++++-|+.-+++...+..| .+....+..+++++..|-|+--+.+ +..|.++.
T Consensus 99 DssLl~lg~~aLlsgitaff~~nA~~~GlItlll~a~vgGfamy~my~y~yr~~ad~sqr~~~~ 162 (226)
T COG4858 99 DSSLLFLGAMALLSGITAFFQKNAQVYGLITLLLTAVVGGFAMYIMYYYAYRMRADNSQRPGTW 162 (226)
T ss_pred cccHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHhhhHHHHHHHHHHHHhhcccccCCchH
Confidence 3457788888899898888765443333 2344557778888888888776665 44577764
No 125
>PRK07220 DNA topoisomerase I; Validated
Probab=40.61 E-value=12 Score=48.21 Aligned_cols=48 Identities=19% Similarity=0.653 Sum_probs=32.4
Q ss_pred ccccccCcccccc--CCCCccccCCCCCCCcchhhHHHHHh----hcCCCCCCCcc
Q 001382 37 QICQICGDEIEIT--DNGEPFVACNECAFPVCRPCYEYERR----EGNQACPQCKT 86 (1089)
Q Consensus 37 ~~C~iCgd~vg~~--~~Ge~fvaC~eC~fpvCrpCyeyerk----eG~~~CpqCkt 86 (1089)
..|..||.++... ..|..|..|. +||-|+--+-..++ .-+..||.|+.
T Consensus 590 ~~CP~Cg~~l~~r~~r~g~~f~gCs--~yp~C~~~~~l~~~g~~~~~~~~Cp~Cg~ 643 (740)
T PRK07220 590 GKCPLCGSDLMVRRSKRGSRFIGCE--GYPECTFSLPLPKSGQIIVTDKVCEAHGL 643 (740)
T ss_pred cccccCCCeeeEEecCCCceEEEcC--CCCCCCceeeCCCCCccccCCCCCCCCCC
Confidence 4899999875442 3466799996 67888755533321 13578999985
No 126
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=40.28 E-value=18 Score=32.16 Aligned_cols=33 Identities=27% Similarity=0.675 Sum_probs=24.2
Q ss_pred CCccccccCccccccCCCCccccCCCCCCCcchh
Q 001382 35 SGQICQICGDEIEITDNGEPFVACNECAFPVCRP 68 (1089)
Q Consensus 35 ~~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrp 68 (1089)
.+|+|..||.....+.++.. .-|..|++-.=|+
T Consensus 27 TSq~C~~CG~~~~~~~~~r~-~~C~~Cg~~~~rD 59 (69)
T PF07282_consen 27 TSQTCPRCGHRNKKRRSGRV-FTCPNCGFEMDRD 59 (69)
T ss_pred CccCccCcccccccccccce-EEcCCCCCEECcH
Confidence 58899999999877555554 4587888876554
No 127
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=40.04 E-value=9.3 Score=38.05 Aligned_cols=29 Identities=17% Similarity=0.635 Sum_probs=16.7
Q ss_pred ccCCCCCCCcchhhHHHHHhhcC-CCCCCCccccccc
Q 001382 56 VACNECAFPVCRPCYEYERREGN-QACPQCKTRYKRI 91 (1089)
Q Consensus 56 vaC~eC~fpvCrpCyeyerkeG~-~~CpqCkt~Ykr~ 91 (1089)
.-|+.|+ ++++..+-. ..||+|+.+-.+.
T Consensus 72 ~~C~~Cg-------~~~~~~~~~~~~CP~Cgs~~~~i 101 (117)
T PRK00564 72 LECKDCS-------HVFKPNALDYGVCEKCHSKNVII 101 (117)
T ss_pred EEhhhCC-------CccccCCccCCcCcCCCCCceEE
Confidence 4466666 334443322 3599999875444
No 128
>PF03884 DUF329: Domain of unknown function (DUF329); InterPro: IPR005584 The biological function of these short proteins is unknown, but they contain four conserved cysteines, suggesting that they all bind zinc. YacG (Q5X8H6 from SWISSPROT) from Escherichia coli has been shown to bind zinc and contains the structural motifs typical of zinc-binding proteins []. The conserved four cysteine motif in these proteins (-C-X(2)-C-X(15)-C-X(3)-C-) is not found in other zinc-binding proteins with known structures.; GO: 0008270 zinc ion binding; PDB: 1LV3_A.
Probab=39.48 E-value=18 Score=32.05 Aligned_cols=33 Identities=27% Similarity=0.501 Sum_probs=13.0
Q ss_pred hhcCCCCCCCccccc------cccCCCCCCCCCCCCCcc
Q 001382 75 REGNQACPQCKTRYK------RIKGSPRVDGDEEEDDTD 107 (1089)
Q Consensus 75 keG~~~CpqCkt~Yk------r~kgsprv~gd~ee~~~d 107 (1089)
.+.|..-|=|-+|-| -..|+=||+|.+++++.+
T Consensus 15 ~~~n~~rPFCS~RCk~iDLg~W~~e~Y~Ip~~~~~~~~~ 53 (57)
T PF03884_consen 15 SPENPFRPFCSERCKLIDLGRWANEEYRIPGEPDDEDED 53 (57)
T ss_dssp SSSSS--SSSSHHHHHHHHS-SSSSS----SSS-SS-S-
T ss_pred cCCCCcCCcccHhhcccCHHHHhcCCcccCCCCCCcccc
Confidence 345555555555543 245777888886544433
No 129
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=39.04 E-value=12 Score=43.45 Aligned_cols=31 Identities=29% Similarity=0.876 Sum_probs=25.7
Q ss_pred CCCcchhhHHHHHhhcC--CCCCCCcccccccc
Q 001382 62 AFPVCRPCYEYERREGN--QACPQCKTRYKRIK 92 (1089)
Q Consensus 62 ~fpvCrpCyeyerkeG~--~~CpqCkt~Ykr~k 92 (1089)
+|-|||.|+---|-+-+ +-||-|.++||.-|
T Consensus 1 ~yqIc~~cwh~i~~~~~~~grcpncr~ky~e~k 33 (327)
T KOG2068|consen 1 GYQICDSCWHHIATSAEKKGRCPNCRTKYKEEK 33 (327)
T ss_pred CceeeHHHHhccccccccccCCccccCccchhh
Confidence 57899999977776666 99999999997543
No 130
>KOG3736 consensus Polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=39.01 E-value=36 Score=42.61 Aligned_cols=49 Identities=16% Similarity=0.075 Sum_probs=41.9
Q ss_pred CCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCchh
Q 001382 362 PSDLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAM 413 (1089)
Q Consensus 362 ~~~lP~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ 413 (1089)
.+.||++-|+|+-+| |...+...||-|+...-=|.---.+.|.||+...
T Consensus 138 ~~~Lp~~Svii~f~n---E~~s~llRtv~Svi~rtp~~lLkEIiLVdD~S~~ 186 (578)
T KOG3736|consen 138 SDKLPTTSVIIIFHN---EAWSTLLRTVHSVINRTPPYLLKEIILVDDFSDR 186 (578)
T ss_pred ccccCCCceEEEEec---CCCcchhheEEeehccCChhHeEEEEEeecCcch
Confidence 456999999999999 9999999999999888766556678999998754
No 131
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=38.95 E-value=24 Score=42.17 Aligned_cols=52 Identities=25% Similarity=0.634 Sum_probs=36.4
Q ss_pred cccccCC-ccccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCCccccc
Q 001382 30 SVKELSG-QICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1089)
Q Consensus 30 ~~~~~~~-~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Yk 89 (1089)
.+..+.. ..|.||.+..- ++.+ -.|+--.|..|...-... ...||.|++.+.
T Consensus 19 ~l~~Le~~l~C~IC~d~~~-----~Pvi--tpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~ 71 (397)
T TIGR00599 19 SLYPLDTSLRCHICKDFFD-----VPVL--TSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQ 71 (397)
T ss_pred cccccccccCCCcCchhhh-----CccC--CCCCCchhHHHHHHHHhC-CCCCCCCCCccc
Confidence 3445444 48999988642 2333 368999999999755443 458999999874
No 132
>COG0551 TopA Zn-finger domain associated with topoisomerase type I [DNA replication, recombination, and repair]
Probab=38.93 E-value=17 Score=36.96 Aligned_cols=49 Identities=33% Similarity=0.807 Sum_probs=36.0
Q ss_pred cCCccccccCcccccc--CCCCccccCCCCCCCcchhhHHH---HHhhcCCCCCCCcc
Q 001382 34 LSGQICQICGDEIEIT--DNGEPFVACNECAFPVCRPCYEY---ERREGNQACPQCKT 86 (1089)
Q Consensus 34 ~~~~~C~iCgd~vg~~--~~Ge~fvaC~eC~fpvCrpCyey---erkeG~~~CpqCkt 86 (1089)
..++.|..||....+- ..| -|+.|. .||.|+- |+- +..+....||+|+.
T Consensus 15 ~~~~~Cp~Cg~~m~~~~~~~g-~f~gCs--~yP~C~~-~~~~~~~~~~~~~~Cp~C~~ 68 (140)
T COG0551 15 KTGQICPKCGKNMVKKFGKYG-IFLGCS--NYPKCDY-YEPEKAIAEKTGVKCPKCGK 68 (140)
T ss_pred ccCccCCcCCCeeEEEEccCC-eEEEeC--CCCCCCC-CcccccccccCceeCCCCCC
Confidence 4578999999995544 468 999994 6999996 221 22356689999996
No 133
>cd02249 ZZ Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.
Probab=38.40 E-value=21 Score=29.58 Aligned_cols=30 Identities=33% Similarity=0.800 Sum_probs=24.5
Q ss_pred cccccCccccccCCCCccccCCCCC-CCcchhhHHH
Q 001382 38 ICQICGDEIEITDNGEPFVACNECA-FPVCRPCYEY 72 (1089)
Q Consensus 38 ~C~iCgd~vg~~~~Ge~fvaC~eC~-fpvCrpCyey 72 (1089)
.|.+|+..| . | ....|.+|. |-+|.+||..
T Consensus 2 ~C~~C~~~i--~--g-~r~~C~~C~d~dLC~~Cf~~ 32 (46)
T cd02249 2 SCDGCLKPI--V--G-VRYHCLVCEDFDLCSSCYAK 32 (46)
T ss_pred CCcCCCCCC--c--C-CEEECCCCCCCcCHHHHHCc
Confidence 588999853 2 5 789999997 9999999953
No 134
>cd02335 ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=38.36 E-value=22 Score=30.02 Aligned_cols=30 Identities=33% Similarity=1.017 Sum_probs=25.1
Q ss_pred cccccCccccccCCCCccccCCCC-CCCcchhhHH
Q 001382 38 ICQICGDEIEITDNGEPFVACNEC-AFPVCRPCYE 71 (1089)
Q Consensus 38 ~C~iCgd~vg~~~~Ge~fvaC~eC-~fpvCrpCye 71 (1089)
.|..|+.++. +...+.|.+| .|-+|-+||.
T Consensus 2 ~Cd~C~~~~~----~g~r~~C~~C~d~dLC~~Cf~ 32 (49)
T cd02335 2 HCDYCSKDIT----GTIRIKCAECPDFDLCLECFS 32 (49)
T ss_pred CCCCcCCCCC----CCcEEECCCCCCcchhHHhhh
Confidence 5888987643 4588999999 9999999995
No 135
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=37.84 E-value=4.2 Score=40.09 Aligned_cols=13 Identities=31% Similarity=0.769 Sum_probs=8.2
Q ss_pred CCCCCCccccccc
Q 001382 79 QACPQCKTRYKRI 91 (1089)
Q Consensus 79 ~~CpqCkt~Ykr~ 91 (1089)
-.||+|+.+..+.
T Consensus 87 ~~CP~Cgs~~~~i 99 (113)
T PF01155_consen 87 FSCPRCGSPDVEI 99 (113)
T ss_dssp HH-SSSSSS-EEE
T ss_pred CCCcCCcCCCcEE
Confidence 4499999987554
No 136
>COG4739 Uncharacterized protein containing a ferredoxin domain [Function unknown]
Probab=37.71 E-value=19 Score=37.44 Aligned_cols=45 Identities=22% Similarity=0.513 Sum_probs=41.0
Q ss_pred cccccCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCCccccc
Q 001382 45 EIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1089)
Q Consensus 45 ~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Yk 89 (1089)
-||+..+|-.-+-|.-|+|.-|..=.|-++.+-+-.=|+|--+|-
T Consensus 77 LIG~Kasg~~glnCgaCGfesC~e~~e~~k~~eeF~GP~C~~k~i 121 (182)
T COG4739 77 LIGVKASGTVGLNCGACGFESCSEMLERDKVGEEFVGPNCMFKYI 121 (182)
T ss_pred EEEeccCCccccccccccchhHHHHHHHHhhhhhccCcchhhhhh
Confidence 478889999999999999999999999888888899999999994
No 137
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=37.37 E-value=16 Score=31.37 Aligned_cols=29 Identities=24% Similarity=0.586 Sum_probs=20.7
Q ss_pred CccccccCccccccCCCCccccCCCCCCCc
Q 001382 36 GQICQICGDEIEITDNGEPFVACNECAFPV 65 (1089)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpv 65 (1089)
.-.|..||.+|.++. ...-+.|..|++.|
T Consensus 6 ~Y~C~~Cg~~~~~~~-~~~~irCp~Cg~rI 34 (49)
T COG1996 6 EYKCARCGREVELDQ-ETRGIRCPYCGSRI 34 (49)
T ss_pred EEEhhhcCCeeehhh-ccCceeCCCCCcEE
Confidence 457999999985443 23458898898865
No 138
>COG2191 Formylmethanofuran dehydrogenase subunit E [Energy production and conversion]
Probab=35.79 E-value=20 Score=39.14 Aligned_cols=26 Identities=42% Similarity=0.945 Sum_probs=20.0
Q ss_pred CccccccCcccccc----CCCCccccCCCCCCCcchhhHH
Q 001382 36 GQICQICGDEIEIT----DNGEPFVACNECAFPVCRPCYE 71 (1089)
Q Consensus 36 ~~~C~iCgd~vg~~----~~Ge~fvaC~eC~fpvCrpCye 71 (1089)
..+|..||+-++-. .||+ |||+|||+
T Consensus 172 ~v~C~kCGE~~~e~~~~~~ng~----------~vC~~C~~ 201 (206)
T COG2191 172 SVRCSKCGELFMEPRAVVLNGK----------PVCKPCAE 201 (206)
T ss_pred eeeccccCcccccchhhhcCCc----------eecccccc
Confidence 35999999987644 3666 78999995
No 139
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=35.68 E-value=12 Score=33.12 Aligned_cols=12 Identities=42% Similarity=1.157 Sum_probs=6.5
Q ss_pred CCCCCCcccccc
Q 001382 79 QACPQCKTRYKR 90 (1089)
Q Consensus 79 ~~CpqCkt~Ykr 90 (1089)
-+||+||+-|..
T Consensus 45 PVCP~Ck~iye~ 56 (58)
T PF11238_consen 45 PVCPECKEIYES 56 (58)
T ss_pred CCCcCHHHHHHh
Confidence 345666666643
No 140
>TIGR02443 conserved hypothetical metal-binding protein. Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N-terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various Proteobacteria.
Probab=35.60 E-value=20 Score=31.91 Aligned_cols=31 Identities=26% Similarity=0.770 Sum_probs=24.5
Q ss_pred cCCccccccCcc---ccccCCCCccccCCCCCCC
Q 001382 34 LSGQICQICGDE---IEITDNGEPFVACNECAFP 64 (1089)
Q Consensus 34 ~~~~~C~iCgd~---vg~~~~Ge~fvaC~eC~fp 64 (1089)
..|-+|.-|+.- +...+||...+-|-+|+|.
T Consensus 7 IAGA~CP~C~~~Dtl~~~~e~~~e~vECv~Cg~~ 40 (59)
T TIGR02443 7 IAGAVCPACSAQDTLAMWKENNIELVECVECGYQ 40 (59)
T ss_pred eccccCCCCcCccEEEEEEeCCceEEEeccCCCc
Confidence 356689999854 5556899999999999984
No 141
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=35.48 E-value=33 Score=30.28 Aligned_cols=47 Identities=30% Similarity=0.762 Sum_probs=34.4
Q ss_pred cccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCCcccccc
Q 001382 38 ICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (1089)
Q Consensus 38 ~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Ykr 90 (1089)
-|..|+.++--+. .+-++-=.||-| |.+|-|-.. +..||-|+--+-+
T Consensus 7 nCE~C~~dLp~~s-~~A~ICSfECTF--C~~C~e~~l---~~~CPNCgGelv~ 53 (57)
T PF06906_consen 7 NCECCDKDLPPDS-PEAYICSFECTF--CADCAETML---NGVCPNCGGELVR 53 (57)
T ss_pred CccccCCCCCCCC-CcceEEeEeCcc--cHHHHHHHh---cCcCcCCCCcccc
Confidence 6999999966543 244555578887 999997654 4799999876643
No 142
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=35.43 E-value=12 Score=37.20 Aligned_cols=29 Identities=28% Similarity=0.564 Sum_probs=17.2
Q ss_pred ccCCCCCCCcchhhHHHHHhhcC-CCCCCCccccccc
Q 001382 56 VACNECAFPVCRPCYEYERREGN-QACPQCKTRYKRI 91 (1089)
Q Consensus 56 vaC~eC~fpvCrpCyeyerkeG~-~~CpqCkt~Ykr~ 91 (1089)
.-|+.|+ ++++..+-. -.||+|+.+=.+.
T Consensus 71 ~~C~~Cg-------~~~~~~~~~~~~CP~Cgs~~~~i 100 (114)
T PRK03681 71 CWCETCQ-------QYVTLLTQRVRRCPQCHGDMLRI 100 (114)
T ss_pred EEcccCC-------CeeecCCccCCcCcCcCCCCcEE
Confidence 4476666 244444443 5699999764333
No 143
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=35.17 E-value=30 Score=43.92 Aligned_cols=59 Identities=32% Similarity=0.794 Sum_probs=41.4
Q ss_pred cCCccccccCccccccCCCC---ccccCCCCC--------------------CCcchhhHH-HH----Hh--hcCCCCCC
Q 001382 34 LSGQICQICGDEIEITDNGE---PFVACNECA--------------------FPVCRPCYE-YE----RR--EGNQACPQ 83 (1089)
Q Consensus 34 ~~~~~C~iCgd~vg~~~~Ge---~fvaC~eC~--------------------fpvCrpCye-ye----rk--eG~~~Cpq 83 (1089)
..-.+|.-|=.++---.+=. +|..|..|| ||.|-.|-+ |+ |+ --.-+||.
T Consensus 99 pD~a~C~~Cl~Ei~dp~~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~nRRfHAQp~aCp~ 178 (750)
T COG0068 99 PDAATCEDCLEEIFDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPLNRRFHAQPIACPK 178 (750)
T ss_pred CchhhhHHHHHHhcCCCCcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCccccccccccccCcc
Confidence 34558999999875444333 699999994 999999974 33 33 22369999
Q ss_pred Ccccc--cccc
Q 001382 84 CKTRY--KRIK 92 (1089)
Q Consensus 84 Ckt~Y--kr~k 92 (1089)
|+-.| ++++
T Consensus 179 CGP~~~l~~~~ 189 (750)
T COG0068 179 CGPHLFLVNHD 189 (750)
T ss_pred cCCCeEEEcCC
Confidence 99754 4444
No 144
>COG4393 Predicted membrane protein [Function unknown]
Probab=34.93 E-value=8.5e+02 Score=29.00 Aligned_cols=23 Identities=22% Similarity=0.314 Sum_probs=15.1
Q ss_pred CCcchhHHHHHHHHHHHHHhhee
Q 001382 1046 DRLPTILLVWAILLASIFSLLWA 1068 (1089)
Q Consensus 1046 ~~~P~~v~~~s~~la~~f~~l~v 1068 (1089)
|+.-.-..+-+.++|++|+++|-
T Consensus 196 n~~~f~iyi~~~ilaiifl~flf 218 (405)
T COG4393 196 NKSTFYIYILFTILAIIFLLFLF 218 (405)
T ss_pred cccchHHHHHHHHHHHHHHHHHh
Confidence 44444455556778888888664
No 145
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=34.80 E-value=10 Score=29.47 Aligned_cols=14 Identities=29% Similarity=0.636 Sum_probs=10.2
Q ss_pred hcCCCCCCCccccc
Q 001382 76 EGNQACPQCKTRYK 89 (1089)
Q Consensus 76 eG~~~CpqCkt~Yk 89 (1089)
+....||.|+.+-.
T Consensus 15 ~~~~~CP~Cg~~~~ 28 (33)
T cd00350 15 EAPWVCPVCGAPKD 28 (33)
T ss_pred cCCCcCcCCCCcHH
Confidence 36678999987644
No 146
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=34.72 E-value=19 Score=27.25 Aligned_cols=28 Identities=39% Similarity=1.017 Sum_probs=12.0
Q ss_pred cccccCccccccCCCCccccCCCCCCCcchhh
Q 001382 38 ICQICGDEIEITDNGEPFVACNECAFPVCRPC 69 (1089)
Q Consensus 38 ~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpC 69 (1089)
.|.+|+..+. |+.+--|.+|.|-+...|
T Consensus 2 ~C~~C~~~~~----~~~~Y~C~~Cdf~lH~~C 29 (30)
T PF07649_consen 2 RCDACGKPID----GGWFYRCSECDFDLHEEC 29 (30)
T ss_dssp --TTTS--------S--EEE-TTT-----HHH
T ss_pred cCCcCCCcCC----CCceEECccCCCccChhc
Confidence 5899998854 367889999999998877
No 147
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=34.68 E-value=13 Score=36.80 Aligned_cols=29 Identities=21% Similarity=0.584 Sum_probs=17.4
Q ss_pred ccCCCCCCCcchhhHHHHHhhcCCCCCCCccccccc
Q 001382 56 VACNECAFPVCRPCYEYERREGNQACPQCKTRYKRI 91 (1089)
Q Consensus 56 vaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Ykr~ 91 (1089)
.-|+.|+ ++++..+-...||+|+.+=.+.
T Consensus 71 ~~C~~Cg-------~~~~~~~~~~~CP~Cgs~~~~i 99 (115)
T TIGR00100 71 CECEDCS-------EEVSPEIDLYRCPKCHGIMLQV 99 (115)
T ss_pred EEcccCC-------CEEecCCcCccCcCCcCCCcEE
Confidence 4466665 3344444456799999765444
No 148
>PF09484 Cas_TM1802: CRISPR-associated protein TM1802 (cas_TM1802); InterPro: IPR013389 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor class of Cas proteins found in at least five prokaryotic genomes: Methanosarcina mazei, Sulfurihydrogenibium azorense, Thermotoga maritima, Carboxydothermus hydrogenoformans, and Dictyoglomus thermophilum, the first of which is archaeal while the rest are bacterial [].
Probab=34.32 E-value=21 Score=44.65 Aligned_cols=44 Identities=30% Similarity=0.610 Sum_probs=26.6
Q ss_pred ccCCccccccCccccccCCCCc-----------ccc-----CCCCCCCcchhhHHHHHhhc
Q 001382 33 ELSGQICQICGDEIEITDNGEP-----------FVA-----CNECAFPVCRPCYEYERREG 77 (1089)
Q Consensus 33 ~~~~~~C~iCgd~vg~~~~Ge~-----------fva-----C~eC~fpvCrpCyeyerkeG 77 (1089)
.....+|.|||.+-.++.+-.. |++ =.-=.||||..||..- .+|
T Consensus 195 ~~~~g~C~iCg~~~~V~~~~~~~~Kfyt~DK~gf~~g~~~k~~~knfpiC~~C~~~l-~~G 254 (593)
T PF09484_consen 195 SKKDGVCSICGKEKEVYGDVSKPFKFYTTDKPGFASGFDKKNAWKNFPICQDCALKL-EEG 254 (593)
T ss_pred cCCCCeEEeCCCCCeecccchhhheeeecCCcccccccccccccccChhhHHHHHHH-HHH
Confidence 3455689999999444444222 222 0123789999999543 444
No 149
>COG4818 Predicted membrane protein [Function unknown]
Probab=33.74 E-value=3.9e+02 Score=26.33 Aligned_cols=26 Identities=35% Similarity=0.459 Sum_probs=17.5
Q ss_pred hhhhHHHHHHHHHHHHHHhcCCccce
Q 001382 939 IGGASSHLFALIQGLLKVVGGVNTNF 964 (1089)
Q Consensus 939 I~~~sa~l~Av~~aLlk~L~g~~~~F 964 (1089)
|.+...++++.+.+++-.+.-++.+|
T Consensus 5 iegaLCY~lgwitGllFlllEre~~F 30 (105)
T COG4818 5 IEGALCYLLGWITGLLFLLLERESKF 30 (105)
T ss_pred hhhHHHHHHHHHHHHHHHHhhccCcc
Confidence 34455677888888877666566555
No 150
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=33.18 E-value=37 Score=27.76 Aligned_cols=43 Identities=23% Similarity=0.752 Sum_probs=31.3
Q ss_pred ccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCCcc
Q 001382 39 CQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKT 86 (1089)
Q Consensus 39 C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt 86 (1089)
|.+|-.+. +++..+++- .|+=-+|..|.+--- .....||.|++
T Consensus 2 C~~C~~~~--~~~~~~~l~--~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 2 CNICFEKY--SEERRPRLT--SCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CcCcCccc--cCCCCeEEc--ccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 88898887 333333222 679999999996554 67789999985
No 151
>PRK11827 hypothetical protein; Provisional
Probab=32.42 E-value=27 Score=31.24 Aligned_cols=32 Identities=22% Similarity=0.430 Sum_probs=18.0
Q ss_pred CcchhhHHHHHhhcCCCCCCCccccccccCCC
Q 001382 64 PVCRPCYEYERREGNQACPQCKTRYKRIKGSP 95 (1089)
Q Consensus 64 pvCrpCyeyerkeG~~~CpqCkt~Ykr~kgsp 95 (1089)
|+|+-=.+|...+..-.|..|+-.|--..|=|
T Consensus 12 P~ckg~L~~~~~~~~Lic~~~~laYPI~dgIP 43 (60)
T PRK11827 12 PVCNGKLWYNQEKQELICKLDNLAFPLRDGIP 43 (60)
T ss_pred CCCCCcCeEcCCCCeEECCccCeeccccCCcc
Confidence 44444334433333467888888886665544
No 152
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=32.25 E-value=17 Score=38.51 Aligned_cols=34 Identities=38% Similarity=0.959 Sum_probs=22.3
Q ss_pred ccccccCccccc----cCCCC-ccccCCCCCCCcchhhH
Q 001382 37 QICQICGDEIEI----TDNGE-PFVACNECAFPVCRPCY 70 (1089)
Q Consensus 37 ~~C~iCgd~vg~----~~~Ge-~fvaC~eC~fpvCrpCy 70 (1089)
.+|..||.+--. ..+|+ ..|--+|=-.||||.||
T Consensus 138 avC~~Cg~~A~~t~R~~~~~~~i~iGg~e~Y~~~Cr~cy 176 (176)
T PF00265_consen 138 AVCEVCGRKATFTQRIVDDGEQILIGGSEKYEPVCRKCY 176 (176)
T ss_dssp EE-TTTSSEE-EEEEEETTSSSS-TTSTTTEEEE-CTTH
T ss_pred cEECCCCCceeEEEEEcCCCCEEEECCCCeEEEechhhC
Confidence 589999988333 24555 36666788899999998
No 153
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=32.00 E-value=11 Score=32.30 Aligned_cols=7 Identities=43% Similarity=1.365 Sum_probs=3.2
Q ss_pred CCCCCcc
Q 001382 80 ACPQCKT 86 (1089)
Q Consensus 80 ~CpqCkt 86 (1089)
.||+|+.
T Consensus 36 ~CP~C~a 42 (50)
T cd00730 36 VCPVCGA 42 (50)
T ss_pred CCCCCCC
Confidence 4444443
No 154
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=31.93 E-value=35 Score=38.63 Aligned_cols=41 Identities=24% Similarity=0.417 Sum_probs=27.4
Q ss_pred hhhHhhhhhccCCCCCCCCceeEEEecCCCCCCCHHHHHHHH
Q 001382 348 YLDRLSLRYEKEGKPSDLADIDIFVSTVDPMKEPPLITANTV 389 (1089)
Q Consensus 348 ~~drL~~r~~~~~~~~~lP~VDvfV~T~dP~kEPp~v~~nTv 389 (1089)
-++.|++-++.=.....+|.|=|||+ +||+..++.++++-+
T Consensus 158 ELeKm~~~Vd~i~~~~~~~~~PlFIs-vDPeRD~~~~~~eY~ 198 (280)
T KOG2792|consen 158 ELEKMSAVVDEIEAKPGLPPVPLFIS-VDPERDSVEVVAEYV 198 (280)
T ss_pred HHHHHHHHHHHHhccCCCCccceEEE-eCcccCCHHHHHHHH
Confidence 35555554432223456788878886 699999998887744
No 155
>PRK14973 DNA topoisomerase I; Provisional
Probab=31.59 E-value=26 Score=46.32 Aligned_cols=47 Identities=23% Similarity=0.708 Sum_probs=31.2
Q ss_pred ccccccCcccccc--CCCCccccCCCCCCCcchhhHHHHHh-hc-----CCCCCCCcc
Q 001382 37 QICQICGDEIEIT--DNGEPFVACNECAFPVCRPCYEYERR-EG-----NQACPQCKT 86 (1089)
Q Consensus 37 ~~C~iCgd~vg~~--~~Ge~fvaC~eC~fpvCrpCyeyerk-eG-----~~~CpqCkt 86 (1089)
..|..||.++-+. ..|. |..|. +||-|+-.+...+. .| .+.||.|+.
T Consensus 589 ~~CP~CG~~l~ik~~k~gk-FigCS--~Yp~Ck~t~~L~~~~~g~~~~~~~~Cp~CG~ 643 (936)
T PRK14973 589 GPCPVCGKDLRIKHIGSSQ-FIGCS--GYPDCTFNIGLPGTTWGWAIRTDEVCPIHHL 643 (936)
T ss_pred ccCCcccccceeecccCce-eEECC--CCCCCCccccCCccccccCCCCCCCCCCCCC
Confidence 4799999876432 2344 99996 66888855544222 12 368999997
No 156
>PRK07219 DNA topoisomerase I; Validated
Probab=31.26 E-value=23 Score=46.08 Aligned_cols=53 Identities=28% Similarity=0.736 Sum_probs=30.6
Q ss_pred CccccccCcccccc--CCCCccccCCCCCCCcchhhHHHHH----hhcCCCCCCCccccccc
Q 001382 36 GQICQICGDEIEIT--DNGEPFVACNECAFPVCRPCYEYER----REGNQACPQCKTRYKRI 91 (1089)
Q Consensus 36 ~~~C~iCgd~vg~~--~~Ge~fvaC~eC~fpvCrpCyeyer----keG~~~CpqCkt~Ykr~ 91 (1089)
...|..||..+... ..|. |..|. +||-|+--+..-+ ..-...||.|+.+..+.
T Consensus 688 ~~~CP~Cg~~l~~k~gr~G~-F~~Cs--~yp~C~~~~~l~~~~~~~~~~~~CpkCg~~l~~~ 746 (822)
T PRK07219 688 IGPCPKCGGELAIKQLKYGS-FLGCT--NYPKCKYTLPLPRRGKITVTDEKCPECGLPLLRV 746 (822)
T ss_pred cccCCCCCCeeEEEcCCCCC-eeeCC--CCCCCCceeecccccccccccCCCCCCCCeEEEE
Confidence 34677777664432 2454 88885 6777753322111 12347899998866543
No 157
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=31.05 E-value=13 Score=43.27 Aligned_cols=45 Identities=33% Similarity=0.750 Sum_probs=37.7
Q ss_pred cccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCCcccc
Q 001382 38 ICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRY 88 (1089)
Q Consensus 38 ~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Y 88 (1089)
+|.||-+=+-.+-. =-||+-..|+.|.--..++||..||-|++.-
T Consensus 45 ~c~icl~llk~tmt------tkeClhrfc~~ci~~a~r~gn~ecptcRk~l 89 (381)
T KOG0311|consen 45 ICPICLSLLKKTMT------TKECLHRFCFDCIWKALRSGNNECPTCRKKL 89 (381)
T ss_pred ccHHHHHHHHhhcc------cHHHHHHHHHHHHHHHHHhcCCCCchHHhhc
Confidence 89999887655421 2389999999999999999999999999876
No 158
>TIGR02460 osmo_MPGsynth mannosyl-3-phosphoglycerate synthase. This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together mannosyl-3-phosphoglycerate phosphatase (MPGP) comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus, this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.
Probab=30.61 E-value=1.2e+02 Score=35.89 Aligned_cols=41 Identities=24% Similarity=0.251 Sum_probs=28.7
Q ss_pred CCCCchhhhHHHHHhhccccCCCEEEEecCCCCCCchHHHHHHH
Q 001382 547 DHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAM 590 (1089)
Q Consensus 547 ~hh~KAGalNallrvSa~~tngp~Il~lDcD~~~~~p~~Lr~am 590 (1089)
-.+.|+-.|=-.+-... +.+.+||-.+|||.|+|- ++.|-+
T Consensus 140 VR~GKgEGMiiG~lLAk-~~g~~YVGFiDaDNyiPG--aV~EYv 180 (381)
T TIGR02460 140 VRSGKGEGMLLGLLLAK-AIGAEYVGFVDADNYFPG--AVNEYV 180 (381)
T ss_pred eecCcchHHHHHHHHHH-HhCCceEeEeecccCCCc--hHHHHH
Confidence 34569888875443322 458999999999999754 566544
No 159
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=30.24 E-value=37 Score=38.50 Aligned_cols=61 Identities=25% Similarity=0.437 Sum_probs=40.0
Q ss_pred ccccccccccCCccccccCccccccCCCCccccCCCCCCCcchh-----hHHHHHh---hc-----CCCCCCCcccccc
Q 001382 25 VARVTSVKELSGQICQICGDEIEITDNGEPFVACNECAFPVCRP-----CYEYERR---EG-----NQACPQCKTRYKR 90 (1089)
Q Consensus 25 ~~~~~~~~~~~~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrp-----Cyeyerk---eG-----~~~CpqCkt~Ykr 90 (1089)
|.-+++-...-+..|.+|+++|. +-+.++|| |-+|-|+- |.--|.. .| .+.||-|++.+.-
T Consensus 171 Dal~~~~~~~~~~~celc~~ei~---e~~~~~a~--c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~~w 244 (276)
T KOG3005|consen 171 DALPQPRTGALNVECELCEKEIL---ETDWSRAT--CPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFLSW 244 (276)
T ss_pred hcccCccccccchhhHHHHHHhc---cccceecc--CCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhceeeH
Confidence 44334444455679999999986 23457777 78888873 6644322 23 2579999998854
No 160
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=30.05 E-value=35 Score=39.52 Aligned_cols=44 Identities=25% Similarity=0.635 Sum_probs=29.0
Q ss_pred CCccccccCccc--c--c---cCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCCccc
Q 001382 35 SGQICQICGDEI--E--I---TDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTR 87 (1089)
Q Consensus 35 ~~~~C~iCgd~v--g--~---~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~ 87 (1089)
+-+.|.+||..= + . +.+|.-+.-|.-|+. |.+-.+-.||.|+..
T Consensus 183 ~~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~t---------eW~~~R~~C~~Cg~~ 233 (305)
T TIGR01562 183 SRTLCPACGSPPVASMVRQGGKETGLRYLSCSLCAT---------EWHYVRVKCSHCEES 233 (305)
T ss_pred CCCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCC---------cccccCccCCCCCCC
Confidence 345999999881 1 1 258888999987764 333334567777653
No 161
>PRK14873 primosome assembly protein PriA; Provisional
Probab=29.42 E-value=34 Score=43.64 Aligned_cols=10 Identities=30% Similarity=1.036 Sum_probs=5.5
Q ss_pred CCCCCCCccc
Q 001382 78 NQACPQCKTR 87 (1089)
Q Consensus 78 ~~~CpqCkt~ 87 (1089)
...||.|+..
T Consensus 422 p~~Cp~Cgs~ 431 (665)
T PRK14873 422 DWRCPRCGSD 431 (665)
T ss_pred CccCCCCcCC
Confidence 3456666554
No 162
>PRK04296 thymidine kinase; Provisional
Probab=29.22 E-value=25 Score=37.37 Aligned_cols=35 Identities=34% Similarity=0.657 Sum_probs=24.0
Q ss_pred ccccccCcccccc----------CCCCc-cccCCCCCCCcchhhHH
Q 001382 37 QICQICGDEIEIT----------DNGEP-FVACNECAFPVCRPCYE 71 (1089)
Q Consensus 37 ~~C~iCgd~vg~~----------~~Ge~-fvaC~eC~fpvCrpCye 71 (1089)
.+|..||.+--.| .+|+. .+--.|=-.|+||.||.
T Consensus 141 ~vC~~Cg~~a~~~~r~~~~~~~~~~~~~~~ig~~e~Y~~~Cr~c~~ 186 (190)
T PRK04296 141 AICVHCGRKATMNQRLIDGGPAVYEGPQVLVGGNESYEAVCRKHYK 186 (190)
T ss_pred EEccccCCccceEEEEeCCCCccCCCCEEEECCcCcEEehhHHhhh
Confidence 4899999873332 23444 45566667899999994
No 163
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=29.18 E-value=34 Score=28.34 Aligned_cols=45 Identities=24% Similarity=0.766 Sum_probs=31.1
Q ss_pred cccccCccccccCCCCccccCCCCCCCcchhhHHHHH-----hhcCCCCCCCcc
Q 001382 38 ICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYER-----REGNQACPQCKT 86 (1089)
Q Consensus 38 ~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyer-----keG~~~CpqCkt 86 (1089)
+|++||. ..+++..|.|..|.--+=..|..... .++.=.||.|+.
T Consensus 1 ~C~vC~~----~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQ----SDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTS----SCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCC----cCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 5899999 56677899999998666666664432 233566776653
No 164
>PRK11595 DNA utilization protein GntX; Provisional
Probab=28.98 E-value=32 Score=37.75 Aligned_cols=39 Identities=23% Similarity=0.664 Sum_probs=25.8
Q ss_pred CccccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCCccc
Q 001382 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTR 87 (1089)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~ 87 (1089)
...|.+||..+..+ ...+|..|.+.-..- ...||+|+.+
T Consensus 5 P~~C~~C~~~~~~~------------~~~lC~~C~~~l~~~-~~~C~~Cg~~ 43 (227)
T PRK11595 5 PGLCWLCRMPLALS------------HWGICSVCSRALRTL-KTCCPQCGLP 43 (227)
T ss_pred CCcCccCCCccCCC------------CCcccHHHHhhCCcc-cCcCccCCCc
Confidence 35799999886432 124788887654332 3589999865
No 165
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=28.90 E-value=21 Score=31.30 Aligned_cols=16 Identities=31% Similarity=0.866 Sum_probs=13.0
Q ss_pred hhcCCCCCCCcccccc
Q 001382 75 REGNQACPQCKTRYKR 90 (1089)
Q Consensus 75 keG~~~CpqCkt~Ykr 90 (1089)
+|---+||.|+++|-|
T Consensus 18 ~dDiVvCp~CgapyHR 33 (54)
T PF14446_consen 18 GDDIVVCPECGAPYHR 33 (54)
T ss_pred CCCEEECCCCCCcccH
Confidence 4445789999999977
No 166
>COG4391 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.77 E-value=21 Score=32.01 Aligned_cols=17 Identities=47% Similarity=1.036 Sum_probs=14.4
Q ss_pred HhhcCCCCCCCcccccc
Q 001382 74 RREGNQACPQCKTRYKR 90 (1089)
Q Consensus 74 rkeG~~~CpqCkt~Ykr 90 (1089)
-++|.-.||=|.|+||-
T Consensus 44 g~~gev~CPYC~t~y~l 60 (62)
T COG4391 44 GDEGEVVCPYCSTRYRL 60 (62)
T ss_pred CCCCcEecCccccEEEe
Confidence 36888999999999974
No 167
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=28.76 E-value=58 Score=29.10 Aligned_cols=49 Identities=27% Similarity=0.575 Sum_probs=35.8
Q ss_pred CccccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcC-CCCCCCcc
Q 001382 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGN-QACPQCKT 86 (1089)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~-~~CpqCkt 86 (1089)
...|.-||-.|.-.+.+ +-.+|..||=-+=+=|+ .-||-+| -.||.|+-
T Consensus 7 ~~~CtSCg~~i~~~~~~-~~F~CPnCG~~~I~RC~-~CRk~~~~Y~CP~CGF 56 (59)
T PRK14890 7 PPKCTSCGIEIAPREKA-VKFLCPNCGEVIIYRCE-KCRKQSNPYTCPKCGF 56 (59)
T ss_pred CccccCCCCcccCCCcc-CEeeCCCCCCeeEeech-hHHhcCCceECCCCCC
Confidence 45899999998655555 45579999877445566 6678777 57999973
No 168
>TIGR02921 PEP_integral PEP-CTERM family integral membrane protein. Members of this protein family, found in three different species so far, have a PEP-CTERM sequence at the carboxyl-terminus (see model TIGR02595), but are unusual among PEP-CTERM proteins in having multiple predicted transmembrane segments. The function is unknown. It is proposed that a member of the EpsH family, to be designated exosortase (see TIGR02602), recognizes and cleaves PEP-CTERM proteins in a manner analogous to the cleavage of LPXTG proteins by sortase (see Haft, et al., 2006).
Probab=28.54 E-value=1.2e+03 Score=30.02 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=17.6
Q ss_pred HhHHHHHHHHHHHHHHHHHhCCccc
Q 001382 870 PITSIPLIAYCTLPAICLLTGKFIV 894 (1089)
Q Consensus 870 ~l~sl~~liylllP~l~Ll~G~~iv 894 (1089)
+-+++..+..+.+|.+|...|..-+
T Consensus 47 ~~~a~~~i~liaip~i~~~ig~~~f 71 (952)
T TIGR02921 47 IEFALALILLIAIPAICIGIGGTCF 71 (952)
T ss_pred HHHHHHHHHHHHHHHHHhhhcchhh
Confidence 3456677777888999887765443
No 169
>KOG2857 consensus Predicted MYND Zn-finger protein/hormone receptor interactor [Transcription]
Probab=28.48 E-value=29 Score=35.82 Aligned_cols=45 Identities=29% Similarity=0.744 Sum_probs=33.2
Q ss_pred CccccccCccccccCCCCccccCCCCCCCcch-hhHHHHHhhcCCCCCCCcccccccc
Q 001382 36 GQICQICGDEIEITDNGEPFVACNECAFPVCR-PCYEYERREGNQACPQCKTRYKRIK 92 (1089)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCr-pCyeyerkeG~~~CpqCkt~Ykr~k 92 (1089)
.++|-||-..+- -.-|.-|.||-|. +||.-- +.=|||+|+=+..+
T Consensus 5 t~tC~ic~e~~~-------KYKCpkC~vPYCSl~CfKiH-----k~tPq~~~ve~~~t 50 (157)
T KOG2857|consen 5 TTTCVICLESEI-------KYKCPKCSVPYCSLPCFKIH-----KSTPQCETVEDNNT 50 (157)
T ss_pred eeeehhhhcchh-------hccCCCCCCccccchhhhhc-----cCCccccccCCccc
Confidence 468888876532 3679999999996 899544 34799998876554
No 170
>TIGR00155 pqiA_fam integral membrane protein, PqiA family. This family consists of uncharacterized predicted integral membrane proteins found, so far, only in the Proteobacteria. Of two members in E. coli, one is induced by paraquat and is designated PqiA, paraquat-inducible protein A.
Probab=28.44 E-value=33 Score=41.14 Aligned_cols=35 Identities=29% Similarity=0.636 Sum_probs=23.0
Q ss_pred ccccCCCCCCCcchhhHHHHHhhc-CCCCCCCcccccccc
Q 001382 54 PFVACNECAFPVCRPCYEYERREG-NQACPQCKTRYKRIK 92 (1089)
Q Consensus 54 ~fvaC~eC~fpvCrpCyeyerkeG-~~~CpqCkt~Ykr~k 92 (1089)
..++|+||+--+=+| ..+.| .-.||+|++.-.|++
T Consensus 12 ~~~~C~~Cd~l~~~~----~l~~g~~a~CpRCg~~L~~~~ 47 (403)
T TIGR00155 12 KHILCSQCDMLVALP----RIESGQKAACPRCGTTLTVGW 47 (403)
T ss_pred CeeeCCCCCCccccc----CCCCCCeeECCCCCCCCcCCC
Confidence 367899998764333 11233 356999999987653
No 171
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=27.45 E-value=14 Score=26.81 Aligned_cols=13 Identities=31% Similarity=0.869 Sum_probs=6.3
Q ss_pred hhcCCCCCCCccc
Q 001382 75 REGNQACPQCKTR 87 (1089)
Q Consensus 75 keG~~~CpqCkt~ 87 (1089)
.++.+-||+|+++
T Consensus 10 ~~~~~fC~~CG~~ 22 (23)
T PF13240_consen 10 EDDAKFCPNCGTP 22 (23)
T ss_pred CCcCcchhhhCCc
Confidence 3444455555543
No 172
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=27.44 E-value=4.1e+02 Score=32.88 Aligned_cols=79 Identities=22% Similarity=0.436 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHH--hhe
Q 001382 990 PPLTLLVFNLIGVIIGVADAISNGYETWGPLFGKLFFSLWVILHLYPFLKGFLGKQDRLPTILLVWAILLASIFS--LLW 1067 (1089)
Q Consensus 990 P~~~Llilnliaiv~Gi~r~i~~~~~~wg~l~g~l~~~~Wvl~~l~Pfl~gL~gR~~~~P~~v~~~s~~la~~f~--~l~ 1067 (1089)
|-..+++++++++++++.+++.... +|. ..++=+..+=.+++ .++-+ |.|++=. -+++|...|. .+|
T Consensus 311 ~~~~~l~l~~~Cia~aV~W~v~R~e-~~A-wilqDvLGIalci~---vLk~v-----RLPnlK~-~tiLL~c~f~YDiF~ 379 (541)
T KOG2442|consen 311 MSYRLLFLSILCIAVAVVWAVFRNE-DWA-WILQDVLGIALCIT---VLKTV-----RLPNLKV-CTILLLCLFLYDIFF 379 (541)
T ss_pred hhHHHHHHHHhhhheeEEEEEeecC-chH-HHHHhhHhHHHHHH---HHHHh-----cCCchhH-HHHHHHHHHHHhhhe
Confidence 4556788888998888877764332 242 33333332222222 23333 8887532 2455555555 499
Q ss_pred eEecCCCCCCCc
Q 001382 1068 ARVNPFVSKGDI 1079 (1089)
Q Consensus 1068 v~~~~~~~~~~~ 1079 (1089)
|-|.||..++|.
T Consensus 380 VFitp~~t~~ge 391 (541)
T KOG2442|consen 380 VFITPFITKNGE 391 (541)
T ss_pred eeeehhhccCCc
Confidence 999999998654
No 173
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=27.15 E-value=5.8e+02 Score=29.36 Aligned_cols=43 Identities=23% Similarity=0.222 Sum_probs=31.0
Q ss_pred hhhhHHHHHhhccccCCCEEEEecCCCCCCchHHHHHHHHhhcC
Q 001382 552 AGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMD 595 (1089)
Q Consensus 552 AGalNallrvSa~~tngp~Il~lDcD~~~~~p~~Lr~amcff~D 595 (1089)
|-|=|.||- +++-....+|+-+|+|-+-..|+.++..+..=.|
T Consensus 128 AraRN~LL~-~aL~p~~swVlWlDaDIv~~P~~lI~dli~~~kd 170 (269)
T PF03452_consen 128 ARARNFLLS-SALGPWHSWVLWLDADIVETPPTLIQDLIAHDKD 170 (269)
T ss_pred HHHHHHHHH-hhcCCcccEEEEEecCcccCChHHHHHHHhCCCC
Confidence 444577764 4544588999999999998888888877664333
No 174
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=26.45 E-value=39 Score=29.57 Aligned_cols=13 Identities=46% Similarity=0.992 Sum_probs=10.3
Q ss_pred cccccCccccccC
Q 001382 38 ICQICGDEIEITD 50 (1089)
Q Consensus 38 ~C~iCgd~vg~~~ 50 (1089)
.|..||.+|.+..
T Consensus 4 ~CP~CG~~iev~~ 16 (54)
T TIGR01206 4 ECPDCGAEIELEN 16 (54)
T ss_pred CCCCCCCEEecCC
Confidence 7889999887753
No 175
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=26.43 E-value=54 Score=29.36 Aligned_cols=48 Identities=31% Similarity=0.703 Sum_probs=33.6
Q ss_pred CccccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcC-CCCCCCc
Q 001382 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGN-QACPQCK 85 (1089)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~-~~CpqCk 85 (1089)
..+|.-||-.|-..+.+-.| +|..||=-+-.-|- --||-|| -.||-|+
T Consensus 9 ~~~CtSCg~~i~p~e~~v~F-~CPnCGe~~I~Rc~-~CRk~g~~Y~Cp~CG 57 (61)
T COG2888 9 PPVCTSCGREIAPGETAVKF-PCPNCGEVEIYRCA-KCRKLGNPYRCPKCG 57 (61)
T ss_pred CceeccCCCEeccCCceeEe-eCCCCCceeeehhh-hHHHcCCceECCCcC
Confidence 34899999998887766555 79999943333333 3367777 5799886
No 176
>PRK14503 mannosyl-3-phosphoglycerate synthase; Provisional
Probab=26.39 E-value=1.3e+02 Score=35.87 Aligned_cols=41 Identities=27% Similarity=0.275 Sum_probs=28.8
Q ss_pred CCCCchhhhHHHHHhhccccCCCEEEEecCCCCCCchHHHHHHH
Q 001382 547 DHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAM 590 (1089)
Q Consensus 547 ~hh~KAGalNallrvSa~~tngp~Il~lDcD~~~~~p~~Lr~am 590 (1089)
-.+.|+-.|=-.+-... +.+..||-.+|||.|+|- ++.|-+
T Consensus 141 VR~GKgEGMiiG~lLAk-~~g~~YVGFiDADNyiPG--aV~EYv 181 (393)
T PRK14503 141 VRSGKGEGMIIGLLLAK-ALGARYVGFVDADNYIPG--AVNEYV 181 (393)
T ss_pred eecCcchHHHHHHHHHH-HhCCCeEeEeecccCCCc--hHHHHH
Confidence 34569888875443322 468999999999999754 666544
No 177
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=26.38 E-value=16 Score=27.01 Aligned_cols=14 Identities=21% Similarity=0.698 Sum_probs=9.9
Q ss_pred HhhcCCCCCCCccc
Q 001382 74 RREGNQACPQCKTR 87 (1089)
Q Consensus 74 rkeG~~~CpqCkt~ 87 (1089)
..++...||.|+++
T Consensus 12 ~~~~~~fC~~CG~~ 25 (26)
T PF13248_consen 12 IDPDAKFCPNCGAK 25 (26)
T ss_pred CCcccccChhhCCC
Confidence 36667788888765
No 178
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=25.93 E-value=18 Score=36.93 Aligned_cols=11 Identities=36% Similarity=0.987 Sum_probs=8.3
Q ss_pred cCCCCCCCccc
Q 001382 77 GNQACPQCKTR 87 (1089)
Q Consensus 77 G~~~CpqCkt~ 87 (1089)
..-.||+|+.+
T Consensus 106 ~~~~CP~Cgs~ 116 (135)
T PRK03824 106 AFLKCPKCGSR 116 (135)
T ss_pred cCcCCcCCCCC
Confidence 44569999976
No 179
>PRK06319 DNA topoisomerase I/SWI domain fusion protein; Validated
Probab=25.90 E-value=34 Score=44.85 Aligned_cols=56 Identities=25% Similarity=0.504 Sum_probs=32.3
Q ss_pred CCccccccCcc--cccc-CCCCccccCCCCCCCcchhhHHHHH-----------hhcCCCCCCCccccccccC
Q 001382 35 SGQICQICGDE--IEIT-DNGEPFVACNECAFPVCRPCYEYER-----------REGNQACPQCKTRYKRIKG 93 (1089)
Q Consensus 35 ~~~~C~iCgd~--vg~~-~~Ge~fvaC~eC~fpvCrpCyeyer-----------keG~~~CpqCkt~Ykr~kg 93 (1089)
....|..||.. +... -.| .|++|. +||-|+-=...++ ......||.|+......+|
T Consensus 591 ~~~~CP~Cg~~~L~~k~gr~G-~Fl~Cs--~yP~C~~t~~~~~~~~~~~~~~~~~~~~~~CP~Cg~~m~lK~g 660 (860)
T PRK06319 591 TEIDCPKCHKGKLVKIWAKNR-YFYGCS--EYPECDYKTSEEELTFNKEDYAEDTPWDSPCPLCGGEMKVRHG 660 (860)
T ss_pred cCcccCCCCCcceeEEecCCC-ceeecc--CCccccccCCcccccccccccccccccCCcCccCCCeeEEecC
Confidence 45689999864 2222 345 699994 5777742111111 1225689999876655443
No 180
>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7.0 [Transcription]
Probab=25.05 E-value=28 Score=30.98 Aligned_cols=28 Identities=32% Similarity=0.880 Sum_probs=20.8
Q ss_pred CccccccCccccccCCCCccccCCCCCCCc
Q 001382 36 GQICQICGDEIEITDNGEPFVACNECAFPV 65 (1089)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpv 65 (1089)
--+|.-||.+-.+. .|| .+.|.||||.|
T Consensus 20 iYiCgdC~~en~lk-~~D-~irCReCG~RI 47 (62)
T KOG3507|consen 20 IYICGDCGQENTLK-RGD-VIRCRECGYRI 47 (62)
T ss_pred EEEecccccccccc-CCC-cEehhhcchHH
Confidence 45899999886554 344 46899999976
No 181
>PF13896 Glyco_transf_49: Glycosyl-transferase for dystroglycan
Probab=25.00 E-value=82 Score=36.51 Aligned_cols=39 Identities=15% Similarity=0.292 Sum_probs=27.5
Q ss_pred cCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCceEEEE
Q 001382 566 SNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYV 605 (1089)
Q Consensus 566 tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~v~~V 605 (1089)
+..+||+++|.|++ |.+++-+....+..--....+.+||
T Consensus 126 a~T~~v~~~DvD~~-ps~~l~~~l~~~~~~~~~~~~~a~V 164 (317)
T PF13896_consen 126 ARTDYVFLLDVDFL-PSPGLYEKLLRFARRNIDKSKTAFV 164 (317)
T ss_pred cCcceEEEecceee-eCcchHHHHHHHhhhhccCCceEEE
Confidence 56799999999997 8887777666655322233467776
No 182
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=24.85 E-value=30 Score=27.63 Aligned_cols=11 Identities=45% Similarity=1.404 Sum_probs=9.6
Q ss_pred CCCCCcccccc
Q 001382 80 ACPQCKTRYKR 90 (1089)
Q Consensus 80 ~CpqCkt~Ykr 90 (1089)
.||.|++.|+-
T Consensus 4 ~CP~C~~~f~v 14 (37)
T PF13719_consen 4 TCPNCQTRFRV 14 (37)
T ss_pred ECCCCCceEEc
Confidence 59999999974
No 183
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=24.75 E-value=37 Score=38.62 Aligned_cols=22 Identities=32% Similarity=0.986 Sum_probs=17.0
Q ss_pred ccCCccccccCccccccCCCCccccCCCCC
Q 001382 33 ELSGQICQICGDEIEITDNGEPFVACNECA 62 (1089)
Q Consensus 33 ~~~~~~C~iCgd~vg~~~~Ge~fvaC~eC~ 62 (1089)
...+..|.-||+- -|++|-.|+
T Consensus 226 ~~~~~~C~~CGg~--------rFlpC~~C~ 247 (281)
T KOG2824|consen 226 CEGGGVCESCGGA--------RFLPCSNCH 247 (281)
T ss_pred CCCCCcCCCcCCc--------ceEecCCCC
Confidence 4566899999854 788998884
No 184
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=24.61 E-value=32 Score=42.34 Aligned_cols=44 Identities=32% Similarity=0.859 Sum_probs=0.0
Q ss_pred cccccCccccccCCCCccccCCCCCCCc----------chhhHHHHHhhcCCCCCCCccccccccC
Q 001382 38 ICQICGDEIEITDNGEPFVACNECAFPV----------CRPCYEYERREGNQACPQCKTRYKRIKG 93 (1089)
Q Consensus 38 ~C~iCgd~vg~~~~Ge~fvaC~eC~fpv----------CrpCyeyerkeG~~~CpqCkt~Ykr~kg 93 (1089)
.|+-||.. +-|..|.-+. |.-|= |+.+-- ..||.|+...-+..|
T Consensus 215 ~C~~Cg~~----------~~C~~C~~~l~~h~~~~~l~Ch~Cg-~~~~~~-~~Cp~C~s~~l~~~g 268 (505)
T TIGR00595 215 LCRSCGYI----------LCCPNCDVSLTYHKKEGKLRCHYCG-YQEPIP-KTCPQCGSEDLVYKG 268 (505)
T ss_pred EhhhCcCc----------cCCCCCCCceEEecCCCeEEcCCCc-CcCCCC-CCCCCCCCCeeEeec
No 185
>PTZ00293 thymidine kinase; Provisional
Probab=24.13 E-value=33 Score=37.71 Aligned_cols=35 Identities=20% Similarity=0.697 Sum_probs=22.7
Q ss_pred ccccccCccccc----cCCCCc-cccCCCCCCCcchhhHH
Q 001382 37 QICQICGDEIEI----TDNGEP-FVACNECAFPVCRPCYE 71 (1089)
Q Consensus 37 ~~C~iCgd~vg~----~~~Ge~-fvaC~eC~fpvCrpCye 71 (1089)
.+|..||.+--. .++|+. .+-=+|=--|+||.||+
T Consensus 138 aiC~~CG~~A~~t~R~~~~~~~v~IGg~e~Y~a~CR~c~~ 177 (211)
T PTZ00293 138 AVCMFCGKEASFSKRIVQSEQIELIGGEDKYIATCRKCFR 177 (211)
T ss_pred eEchhhCCcceeEEEEcCCCCEEEECCcccEEehhhhhhh
Confidence 589999988433 234443 23333445789999995
No 186
>cd02336 ZZ_RSC8 Zinc finger, ZZ type. Zinc finger present in RSC8 and related proteins. RSC8 is a component of the RSC complex, which is closely related to the SWI/SNF complex and is involved in remodeling chromatin structure. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=24.06 E-value=41 Score=28.35 Aligned_cols=34 Identities=21% Similarity=0.499 Sum_probs=25.2
Q ss_pred cccccCccccccCCCCccccCCCCC-CCcchhhHHHHHhh
Q 001382 38 ICQICGDEIEITDNGEPFVACNECA-FPVCRPCYEYERRE 76 (1089)
Q Consensus 38 ~C~iCgd~vg~~~~Ge~fvaC~eC~-fpvCrpCyeyerke 76 (1089)
.|.+||-++.. +..-|-.++ +-+|.+||+-.|--
T Consensus 2 ~C~~Cg~D~t~-----vryh~~~~~~~dLC~~CF~~G~f~ 36 (45)
T cd02336 2 HCFTCGNDCTR-----VRYHNLKAKKYDLCPSCYQEGRFP 36 (45)
T ss_pred cccCCCCccCc-----eEEEecCCCccccChHHHhCcCCC
Confidence 69999999742 666676775 99999999654433
No 187
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=23.94 E-value=89 Score=26.51 Aligned_cols=45 Identities=36% Similarity=0.710 Sum_probs=28.4
Q ss_pred cccccCccccccCCCCccccCCCCCC---CcchhhHHHHHh-hcCCCCCCCc
Q 001382 38 ICQICGDEIEITDNGEPFVACNECAF---PVCRPCYEYERR-EGNQACPQCK 85 (1089)
Q Consensus 38 ~C~iCgd~vg~~~~Ge~fvaC~eC~f---pvCrpCyeyerk-eG~~~CpqCk 85 (1089)
+|.||-+ +-+++..++.+| .|.- -|=+.|.+.=.. .++..||.|+
T Consensus 1 ~CrIC~~--~~~~~~~l~~PC-~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHD--EGDEGDPLVSPC-RCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCC--CCCCCCeeEecc-ccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 5899987 333444457778 4543 244577765544 4467899996
No 188
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=23.86 E-value=33 Score=27.40 Aligned_cols=11 Identities=36% Similarity=1.310 Sum_probs=9.4
Q ss_pred CCCCCcccccc
Q 001382 80 ACPQCKTRYKR 90 (1089)
Q Consensus 80 ~CpqCkt~Ykr 90 (1089)
.||+|+++|.-
T Consensus 4 ~Cp~C~~~y~i 14 (36)
T PF13717_consen 4 TCPNCQAKYEI 14 (36)
T ss_pred ECCCCCCEEeC
Confidence 59999999953
No 189
>TIGR02556 cas_TM1802 CRISPR-associated protein, TM1802 family. This minor cas protein is found in CRISPR/cas regions of at least five prokaryotic genomes: Methanosarcina mazei, Sulfurihydrogenibium azorense, Thermotoga maritima, Carboxydothermus hydrogenoformans, and Dictyoglomus thermophilum, the first of which is archaeal while the rest are bacterial.
Probab=23.34 E-value=49 Score=41.32 Aligned_cols=41 Identities=29% Similarity=0.674 Sum_probs=24.8
Q ss_pred CccccccCccccccCCC----------Ccccc--CCCCCCCcchhhHHHHHhhc
Q 001382 36 GQICQICGDEIEITDNG----------EPFVA--CNECAFPVCRPCYEYERREG 77 (1089)
Q Consensus 36 ~~~C~iCgd~vg~~~~G----------e~fva--C~eC~fpvCrpCyeyerkeG 77 (1089)
+.+|.|||.+--++.+- .-|++ =.-=.||||+.||.+ ...|
T Consensus 170 ~g~C~iCg~~~~~v~~~~~fKfyT~DK~gf~sgk~~~knfpIC~eC~~~-l~~G 222 (555)
T TIGR02556 170 SGTCHLCGERSDITYDSFVYKFYTTDKPGFSSDKGFSKNFSICRDCYKD-VIYG 222 (555)
T ss_pred ceEEeccCCCCceeccceeeeeeecCCCcccCCccccccCchhHHHHHH-HHHH
Confidence 57999999973322221 11333 112279999999954 4555
No 190
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=23.05 E-value=48 Score=37.36 Aligned_cols=58 Identities=29% Similarity=0.572 Sum_probs=43.8
Q ss_pred CccccccCccccccCCCCccccCCCCC-CCc--chhhHHHHHh-hcCCCCCCCccccccccCC
Q 001382 36 GQICQICGDEIEITDNGEPFVACNECA-FPV--CRPCYEYERR-EGNQACPQCKTRYKRIKGS 94 (1089)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~-fpv--CrpCyeyerk-eG~~~CpqCkt~Ykr~kgs 94 (1089)
+..|.||.++........+-++| .|. -+. =|.|.+-..+ -|+-.|..|+..|.+....
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC-~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~~~~ 139 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPC-SCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINVGTK 139 (323)
T ss_pred CCcEEEEecccccccccccccCc-cccCcHHHHHHHHHHhhhccccCeeeecccccceeccee
Confidence 46899999987665444678899 672 222 5889988876 5779999999999987544
No 191
>PRK08359 transcription factor; Validated
Probab=22.97 E-value=26 Score=37.57 Aligned_cols=30 Identities=43% Similarity=0.979 Sum_probs=19.6
Q ss_pred ccccccCcccccc-----CCCCccccCCCCCCCcchhhH-HHHH
Q 001382 37 QICQICGDEIEIT-----DNGEPFVACNECAFPVCRPCY-EYER 74 (1089)
Q Consensus 37 ~~C~iCgd~vg~~-----~~Ge~fvaC~eC~fpvCrpCy-eyer 74 (1089)
..|.|||.+|--. .+|-. .-||..|| .|-.
T Consensus 7 ~~CEiCG~~i~g~~~~v~ieGae--------l~VC~~Ca~k~G~ 42 (176)
T PRK08359 7 RYCEICGAEIRGPGHRIRIEGAE--------LLVCDRCYEKYGR 42 (176)
T ss_pred ceeecCCCccCCCCeEEEEcCeE--------EehHHHHHHHhCC
Confidence 4599999997422 24443 45778888 6744
No 192
>PF09526 DUF2387: Probable metal-binding protein (DUF2387); InterPro: IPR012658 Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various proteobacteria.
Probab=22.88 E-value=45 Score=30.73 Aligned_cols=31 Identities=32% Similarity=0.881 Sum_probs=23.9
Q ss_pred cCCccccccCc--ccc-ccCCCCccccCCCCCCC
Q 001382 34 LSGQICQICGD--EIE-ITDNGEPFVACNECAFP 64 (1089)
Q Consensus 34 ~~~~~C~iCgd--~vg-~~~~Ge~fvaC~eC~fp 64 (1089)
..|-+|.-|+. .|. ..+||...+-|-+|+|-
T Consensus 6 IAGa~CP~C~~~D~i~~~~e~~ve~vECV~CGy~ 39 (71)
T PF09526_consen 6 IAGAVCPKCQAMDTIMMWRENGVEYVECVECGYT 39 (71)
T ss_pred ecCccCCCCcCccEEEEEEeCCceEEEecCCCCe
Confidence 35678999984 444 45788899999999984
No 193
>COG1499 NMD3 NMD protein affecting ribosome stability and mRNA decay [Translation, ribosomal structure and biogenesis]
Probab=22.87 E-value=44 Score=39.48 Aligned_cols=49 Identities=27% Similarity=0.612 Sum_probs=29.1
Q ss_pred cCCccccccCccccccCCCCccccCCCCCCCcchhhHHHHHh------hc--CCCCCCCccccccccCCCCCC
Q 001382 34 LSGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERR------EG--NQACPQCKTRYKRIKGSPRVD 98 (1089)
Q Consensus 34 ~~~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerk------eG--~~~CpqCkt~Ykr~kgsprv~ 98 (1089)
.+...|--||..+-...+| +|..|| .|+. ++ --.|++|+..+ .|.+.++
T Consensus 4 ~~~~~C~~CGr~~~~~~~~------------lC~dC~-~~~~~~~~ip~~~~v~~C~~Cga~~---~~~~W~~ 60 (355)
T COG1499 4 ASTILCVRCGRSVDPLIDG------------LCGDCY-VETTPLIEIPDEVNVEVCRHCGAYR---IRGRWVD 60 (355)
T ss_pred CcccEeccCCCcCchhhcc------------ccHHHH-hccCccccCCCceEEEECCcCCCcc---CCCccee
Confidence 4556788888776532232 699999 4422 11 15799999333 3445554
No 194
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.86 E-value=43 Score=35.94 Aligned_cols=42 Identities=26% Similarity=0.687 Sum_probs=35.0
Q ss_pred CccccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCCc
Q 001382 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCK 85 (1089)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCk 85 (1089)
--.|.||-+..--. ....|+--.|+.|-+.-.. +.-.||.|+
T Consensus 13 ~~~C~iC~~~~~~p-------~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr 54 (386)
T KOG2177|consen 13 ELTCPICLEYFREP-------VLLPCGHNFCRACLTRSWE-GPLSCPVCR 54 (386)
T ss_pred cccChhhHHHhhcC-------ccccccchHhHHHHHHhcC-CCcCCcccC
Confidence 44899998885443 5667899999999988877 889999999
No 195
>COG4707 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.78 E-value=37 Score=32.99 Aligned_cols=43 Identities=37% Similarity=0.621 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHhhhccCCcCccccCCC-------CCCCCCCCCCCcchhhhhccCCC
Q 001382 470 KREYEEFKVRINGLVAMAQKVPEDGWTMQDG-------TPWPGNNVRDHPGMIQVFLGQNG 523 (1089)
Q Consensus 470 kreYee~k~rI~~l~~~~~~~p~~~w~m~dg-------~~w~~~~~rdHp~iiqv~l~~~g 523 (1089)
|.||+|+|..- ..+|.|+|= +.|.-.+--.||.+.+-|--.+|
T Consensus 20 k~eyqel~~~~-----------~d~W~m~Dlk~k~~~~sd~tiknlL~hPrl~k~L~ieng 69 (107)
T COG4707 20 KVEYQELKEKD-----------FDGWVMMDLKEKKSNRSDWTIKNLLLHPRLKKMLSIENG 69 (107)
T ss_pred HHHHHHHHHhh-----------hcchhhhHHHHHhcccchhHHHHHhcCchhhhheeeecC
Confidence 56999988631 258998875 34554445678888877655555
No 196
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=22.75 E-value=38 Score=45.56 Aligned_cols=48 Identities=25% Similarity=0.645 Sum_probs=30.3
Q ss_pred ccccccCccccccCCCCccccCCCCCCCc-----chhhHHHHH--hhcCCCCCCCccccccc
Q 001382 37 QICQICGDEIEITDNGEPFVACNECAFPV-----CRPCYEYER--REGNQACPQCKTRYKRI 91 (1089)
Q Consensus 37 ~~C~iCgd~vg~~~~Ge~fvaC~eC~fpv-----CrpCyeyer--keG~~~CpqCkt~Ykr~ 91 (1089)
..|.-||..+-. .-|.+|+-+. |..|=-.-- ..|...||.|+++-...
T Consensus 668 rkCPkCG~~t~~-------~fCP~CGs~te~vy~CPsCGaev~~des~a~~CP~CGtplv~~ 722 (1337)
T PRK14714 668 RRCPSCGTETYE-------NRCPDCGTHTEPVYVCPDCGAEVPPDESGRVECPRCDVELTPY 722 (1337)
T ss_pred EECCCCCCcccc-------ccCcccCCcCCCceeCccCCCccCCCccccccCCCCCCccccc
Confidence 478888886421 2788888664 777753111 12355799999876544
No 197
>cd00899 b4GalT Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. Beta-4-Galactosyltransferase transfers galactose from uridine diphosphogalactose to the terminal beta-N-acetylglucosamine residues, hereby forming the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. At least seven homologous beta-4-galactosyltransferase isoforms have been identified that use different types of glycoproteins and glycolipids as substrates. Of the seven identified members of the beta-1,4-galactosyltransferase subfamily (beta1,4-Gal-T1 to -T7), b1,4-Gal-T1 is most characterized (biochemically). It is a Golgi-resident type II membrane enzyme with a cytoplasmic domain, membrane spanning region, and a stem region and catalytic domain facing the lumen.
Probab=22.67 E-value=99 Score=34.29 Aligned_cols=79 Identities=16% Similarity=0.235 Sum_probs=52.9
Q ss_pred cCCchHHHHHHhHhhCCCCCCCChhhHHHHhHHhhcccccccCccccccCcccccccchHHHHHHHHhCCcEEEEecCCC
Q 001382 732 FGQSPVFIASTLKEAGGVPTGASTASLLNEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKR 811 (1089)
Q Consensus 732 fG~s~~f~~S~l~e~GG~p~~~~~~~~~~ea~~v~sc~YE~~T~WG~evGW~ygSvTEDi~Tg~rLh~rGWrsvY~~p~~ 811 (1089)
+|....+.++.+.+++|++.. -| || | -||-+.+.||...|.+........
T Consensus 112 ~Gg~~~~~k~~f~~VNGf~n~----------------------f~----GW--G--gEDdd~~~Rl~~~g~~~~r~~~~~ 161 (219)
T cd00899 112 FGGVLALTREQFRKVNGFSNA----------------------YW----GW--G--GEDDDLYNRIKAAGLKITRPSGDT 161 (219)
T ss_pred cccceeeEHHHHHHhCCcCCc----------------------Cc----cC--C--cchHHHHHHHHHCCCeEEeccCcc
Confidence 677777888888999999862 23 34 3 489999999999999876653211
Q ss_pred C-c--c-------cccCCCCHHHHHHhhheecchhhHHH
Q 001382 812 P-A--F-------KGSAPINLSDRLHQVLRWALGSVEIL 840 (1089)
Q Consensus 812 ~-A--f-------~G~aP~tl~~~l~QR~RWA~G~lQIl 840 (1089)
. . + ....|.-+.....++.||+..++.-+
T Consensus 162 ~~~~hL~H~~~~r~~~N~~r~~~l~~~~~~~~~dGLnsl 200 (219)
T cd00899 162 GRYKMIRHIHDKRNRDNPNRFALLQNSRERDHSDGLNSL 200 (219)
T ss_pred cceeeeecCCCcccccCHHHHHHHHhhCeEeccCCccce
Confidence 1 0 0 12234445566777888887776544
No 198
>PF04641 Rtf2: Rtf2 RING-finger
Probab=22.39 E-value=59 Score=36.58 Aligned_cols=51 Identities=24% Similarity=0.544 Sum_probs=37.9
Q ss_pred cCCccccccCccccccCCCC-ccccCCCCCCCcchhhHHHHHhhcCCCCCCCcccccc
Q 001382 34 LSGQICQICGDEIEITDNGE-PFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (1089)
Q Consensus 34 ~~~~~C~iCgd~vg~~~~Ge-~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Ykr 90 (1089)
...-+|.|++.+. +|- -||+=--||=-+|..|.+-- + .+..||.|.++|.+
T Consensus 111 ~~~~~CPvt~~~~----~~~~~fv~l~~cG~V~s~~alke~-k-~~~~Cp~c~~~f~~ 162 (260)
T PF04641_consen 111 EGRFICPVTGKEF----NGKHKFVYLRPCGCVFSEKALKEL-K-KSKKCPVCGKPFTE 162 (260)
T ss_pred CceeECCCCCccc----CCceeEEEEcCCCCEeeHHHHHhh-c-ccccccccCCcccc
Confidence 3445999998876 454 58887788878888888544 4 45679999999964
No 199
>PRK15103 paraquat-inducible membrane protein A; Provisional
Probab=22.31 E-value=38 Score=40.80 Aligned_cols=33 Identities=30% Similarity=0.662 Sum_probs=22.9
Q ss_pred ccCCCCCCCcchhhHHHHHhhc-CCCCCCCcccccccc
Q 001382 56 VACNECAFPVCRPCYEYERREG-NQACPQCKTRYKRIK 92 (1089)
Q Consensus 56 vaC~eC~fpvCrpCyeyerkeG-~~~CpqCkt~Ykr~k 92 (1089)
++|++|+--+..|= .+.| ...||+|+++-.|++
T Consensus 11 ~~C~~Cd~l~~~~~----l~~g~~a~CpRCg~~L~~~~ 44 (419)
T PRK15103 11 ILCPQCDMLVALPR----LEHGQKAACPRCGTTLTVRW 44 (419)
T ss_pred ccCCCCCceeecCC----CCCCCeeECCCCCCCCcCCC
Confidence 78999998765431 1233 356999999987663
No 200
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=22.09 E-value=48 Score=25.26 Aligned_cols=28 Identities=36% Similarity=0.954 Sum_probs=21.0
Q ss_pred cccccCccccccCCCCccccCCCCCCCcchhh
Q 001382 38 ICQICGDEIEITDNGEPFVACNECAFPVCRPC 69 (1089)
Q Consensus 38 ~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpC 69 (1089)
.|.+|+.++ +|..|--|.+|.|-+..-|
T Consensus 2 ~C~~C~~~~----~~~~~Y~C~~c~f~lh~~C 29 (30)
T PF03107_consen 2 WCDVCRRKI----DGFYFYHCSECCFTLHVRC 29 (30)
T ss_pred CCCCCCCCc----CCCEeEEeCCCCCeEcCcc
Confidence 589998774 3433889999999887655
No 201
>TIGR03830 CxxCG_CxxCG_HTH putative zinc finger/helix-turn-helix protein, YgiT family. This model describes a family of predicted regulatory proteins with a conserved zinc finger/HTH architecture. The amino-terminal region contains a novel domain, featuring two CXXC motifs and occuring in a number of small bacterial proteins as well as in the present family. The carboxyl-terminal region consists of a helix-turn-helix domain, modeled by pfam01381. The predicted function is DNA binding and transcriptional regulation.
Probab=21.44 E-value=31 Score=33.72 Aligned_cols=40 Identities=25% Similarity=0.620 Sum_probs=25.5
Q ss_pred ccccCcccccc-CCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCCcccc
Q 001382 39 CQICGDEIEIT-DNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRY 88 (1089)
Q Consensus 39 C~iCgd~vg~~-~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Y 88 (1089)
|.+||...+.. ..-+.|.=+ .+.+.|-.|++ .||+|++.|
T Consensus 1 C~~C~~~~~~~~~~~~~~~~~-G~~~~v~~~~~---------~C~~CGe~~ 41 (127)
T TIGR03830 1 CPICGSGELVRDVKDEPYTYK-GESITIGVPGW---------YCPACGEEL 41 (127)
T ss_pred CCCCCCccceeeeecceEEEc-CEEEEEeeeee---------ECCCCCCEE
Confidence 88999654433 334445445 35555655655 699999988
No 202
>PF02709 Glyco_transf_7C: N-terminal domain of galactosyltransferase; InterPro: IPR003859 This is a family of galactosyltransferases from a wide range of metazoa with three related galactosyltransferase activities; all three of which are possessed by one sequence in some cases. The three functions are N-acetyllactosamine synthase (2.4.1.90 from EC); beta-N-acetylglucosaminyl-glycopeptide beta-1,4-galactosyltransferase (2.4.1.38 from EC); and lactose synthase (2.4.1.22 from EC). Note that N-acetyllactosamine synthase is a component of lactose synthase along with alpha-lactalbumin, in the absence of alpha-lactalbumin N-acetyllactosamine synthase is used.; GO: 0016757 transferase activity, transferring glycosyl groups, 0005975 carbohydrate metabolic process; PDB: 2AGD_B 3EE5_A 2AE7_B 2AEC_A 2FYA_A 2AES_B 2AH9_A 2FYB_A 2FY7_A 3LW6_A ....
Probab=21.13 E-value=57 Score=30.20 Aligned_cols=48 Identities=21% Similarity=0.236 Sum_probs=29.8
Q ss_pred hcCCchHHHHHHhHhhCCCCCCCChhhHHHHhHHhhcccccccCccccccCcccccccchHHHHHHHHhCCcEEEEec
Q 001382 731 KFGQSPVFIASTLKEAGGVPTGASTASLLNEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCI 808 (1089)
Q Consensus 731 ~fG~s~~f~~S~l~e~GG~p~~~~~~~~~~ea~~v~sc~YE~~T~WG~evGW~ygSvTEDi~Tg~rLh~rGWrsvY~~ 808 (1089)
-+|....+.++.+.++||+++. - .|| |- ||.+...|+...|.+.....
T Consensus 19 ~~Gg~~~~~~~~f~~vnGfde~----------------------f----~gW--G~--ED~Dl~~Rl~~~g~~~~~~~ 66 (78)
T PF02709_consen 19 FFGGVFAISREDFEKVNGFDER----------------------F----WGW--GG--EDDDLYNRLWKAGLKIVRVP 66 (78)
T ss_dssp ---SEEEEEHHHHHHTTSS-SS---------------------------TSC--SS--HHHHHHHHHHHTT---B-SS
T ss_pred eeEEEEEEeHHHHHHcCCCCcc----------------------c----ccc--Cc--cHHHHHHHHHHcCCeEEecC
Confidence 3566666777788899999862 1 123 43 99999999999999887763
No 203
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=21.10 E-value=33 Score=35.60 Aligned_cols=43 Identities=35% Similarity=0.858 Sum_probs=25.1
Q ss_pred CCccccccCccccccCCCCccccCCCCCCCcchhhHHHH-HhhcCCCCCCCcc
Q 001382 35 SGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYE-RREGNQACPQCKT 86 (1089)
Q Consensus 35 ~~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeye-rkeG~~~CpqCkt 86 (1089)
.+..|..||+ .-||+|.+|.= -|+-=.+.. ...+-..||.|++
T Consensus 98 ~~~~C~~Cgg--------~rfv~C~~C~G-s~k~~~~~~~~~~~~~rC~~Cne 141 (147)
T cd03031 98 GGGVCEGCGG--------ARFVPCSECNG-SCKVFAENATAAGGFLRCPECNE 141 (147)
T ss_pred CCCCCCCCCC--------cCeEECCCCCC-cceEEeccCcccccEEECCCCCc
Confidence 4557888884 47899988841 122211110 1233478999886
No 204
>KOG3533 consensus Inositol 1,4,5-trisphosphate receptor [Signal transduction mechanisms]
Probab=21.09 E-value=2.4e+03 Score=30.08 Aligned_cols=16 Identities=25% Similarity=0.613 Sum_probs=12.0
Q ss_pred cEEEEcCCCchhhhHH
Q 001382 402 VACYVSDDGAAMLTFE 417 (1089)
Q Consensus 402 l~~yvsDDG~s~ltf~ 417 (1089)
+.|-+=+.|+|.|..+
T Consensus 1779 iQc~LdkeGAs~LV~d 1794 (2706)
T KOG3533|consen 1779 IQCKLDKEGASDLVTD 1794 (2706)
T ss_pred HHhhccccchhhhhHH
Confidence 4588888899887554
No 205
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=21.08 E-value=48 Score=42.64 Aligned_cols=58 Identities=31% Similarity=0.783 Sum_probs=42.1
Q ss_pred cCCccccccCccccccCC---CCccccCCCCC--------------------CCcchhhHH-HH----Hhh--cCCCCCC
Q 001382 34 LSGQICQICGDEIEITDN---GEPFVACNECA--------------------FPVCRPCYE-YE----RRE--GNQACPQ 83 (1089)
Q Consensus 34 ~~~~~C~iCgd~vg~~~~---Ge~fvaC~eC~--------------------fpvCrpCye-ye----rke--G~~~Cpq 83 (1089)
..-.+|.-|-+++---.| +=+|.-|..|| |+.|..|.. |+ |+- ---+||.
T Consensus 66 pD~a~C~~Cl~E~~dp~~Rry~YpF~nCt~CGPr~~i~~~lpydr~~t~m~~f~~C~~C~~ey~~p~~rr~h~~~~~C~~ 145 (711)
T TIGR00143 66 ADVATCSDCLEEMLDKNDRRYLYPFISCTHCGPRFTIIEALPYDRENTSMADFPLCPDCAKEYKDPLDRRFHAQPIACPR 145 (711)
T ss_pred CchhhHHHHHHHhcCCCcccccCCcccccCCCCCeEEeecCCCCCCCcCCCCCcCCHHHHHHhcCCccccCCCCCccCCC
Confidence 456699999999833232 45899999994 999999984 32 332 2258999
Q ss_pred Cccccccc
Q 001382 84 CKTRYKRI 91 (1089)
Q Consensus 84 Ckt~Ykr~ 91 (1089)
|+=|+.-.
T Consensus 146 Cgp~l~l~ 153 (711)
T TIGR00143 146 CGPQLNFV 153 (711)
T ss_pred CCcEEEEE
Confidence 99988643
No 206
>COG4416 Com Mu-like prophage protein Com [General function prediction only]
Probab=20.75 E-value=60 Score=28.53 Aligned_cols=22 Identities=32% Similarity=0.813 Sum_probs=15.4
Q ss_pred chhhHHHHHhhcCC-----CCCCCccc
Q 001382 66 CRPCYEYERREGNQ-----ACPQCKTR 87 (1089)
Q Consensus 66 CrpCyeyerkeG~~-----~CpqCkt~ 87 (1089)
|+-|-..-.+-+.| .||+||+-
T Consensus 7 C~~CnKlLa~a~~~~yle~KCPrCK~v 33 (60)
T COG4416 7 CAKCNKLLAEAEGQAYLEKKCPRCKEV 33 (60)
T ss_pred hHHHhHHHHhcccceeeeecCCcccee
Confidence 77777665554444 69999975
No 207
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.68 E-value=65 Score=34.69 Aligned_cols=45 Identities=24% Similarity=0.674 Sum_probs=35.7
Q ss_pred ccccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCCccc
Q 001382 37 QICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTR 87 (1089)
Q Consensus 37 ~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~ 87 (1089)
-.|.||=|.+.-. +-|+= +||---|+.|-+..+|.+ ..||-|..+
T Consensus 132 ~~CPiCl~~~sek----~~vsT-kCGHvFC~~Cik~alk~~-~~CP~C~kk 176 (187)
T KOG0320|consen 132 YKCPICLDSVSEK----VPVST-KCGHVFCSQCIKDALKNT-NKCPTCRKK 176 (187)
T ss_pred cCCCceecchhhc----ccccc-ccchhHHHHHHHHHHHhC-CCCCCcccc
Confidence 5788887775432 33554 899999999999999999 789999873
No 208
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=20.44 E-value=2.2e+02 Score=36.67 Aligned_cols=41 Identities=29% Similarity=0.271 Sum_probs=29.2
Q ss_pred CCCCchhhhHHHHHhhccccCCCEEEEecCCCCCCchHHHHHHH
Q 001382 547 DHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAM 590 (1089)
Q Consensus 547 ~hh~KAGalNallrvSa~~tngp~Il~lDcD~~~~~p~~Lr~am 590 (1089)
-.+.|+-.|=-++-... +.+.+||-.+|||.|+|- ++.|-+
T Consensus 145 vr~gk~egm~~g~~la~-~~g~~yvgfidadny~pg--~v~ey~ 185 (694)
T PRK14502 145 IRSGKAEGMILGIILTM-FSGRDYVGFIDTDNYIPG--AVWEYA 185 (694)
T ss_pred eecCcchHHHHHHHHHH-hcCCceEeEeeccCCCCc--hHHHHH
Confidence 34579988875443322 578999999999999754 566544
No 209
>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....
Probab=20.16 E-value=52 Score=26.27 Aligned_cols=30 Identities=23% Similarity=0.546 Sum_probs=22.3
Q ss_pred CccccccCccccccCCCCccccCCCCCCCcchhhHHH
Q 001382 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEY 72 (1089)
Q Consensus 36 ~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyey 72 (1089)
...|..|++.. .-.-|.+|.-++|..|...
T Consensus 3 ~~~C~~H~~~~-------~~~~C~~C~~~~C~~C~~~ 32 (42)
T PF00643_consen 3 EPKCPEHPEEP-------LSLFCEDCNEPLCSECTVS 32 (42)
T ss_dssp SSB-SSTTTSB-------EEEEETTTTEEEEHHHHHT
T ss_pred CccCccCCccc-------eEEEecCCCCccCccCCCC
Confidence 45777777542 4577999999999999964
No 210
>PF12773 DZR: Double zinc ribbon
Probab=20.01 E-value=64 Score=26.84 Aligned_cols=12 Identities=25% Similarity=0.888 Sum_probs=7.4
Q ss_pred CccccccCcccc
Q 001382 36 GQICQICGDEIE 47 (1089)
Q Consensus 36 ~~~C~iCgd~vg 47 (1089)
...|..||-.+.
T Consensus 12 ~~fC~~CG~~l~ 23 (50)
T PF12773_consen 12 AKFCPHCGTPLP 23 (50)
T ss_pred ccCChhhcCChh
Confidence 446666666655
Done!