Query 001383
Match_columns 1088
No_of_seqs 492 out of 1827
Neff 4.7
Searched_HMMs 46136
Date Thu Mar 28 23:24:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001383.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001383hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0956 PHD finger protein AF1 99.2 2E-11 4.3E-16 143.3 5.2 150 716-873 4-187 (900)
2 COG1246 ArgA N-acetylglutamate 99.1 9.6E-11 2.1E-15 118.7 6.6 90 963-1056 38-128 (153)
3 KOG4299 PHD Zn-finger protein 99.0 6.9E-10 1.5E-14 131.0 9.9 46 717-762 253-305 (613)
4 PRK10314 putative acyltransfer 99.0 1.3E-09 2.7E-14 110.3 9.8 115 925-1052 16-135 (153)
5 KOG1244 Predicted transcriptio 99.0 1.3E-10 2.9E-15 125.1 2.0 94 715-865 222-330 (336)
6 COG5141 PHD zinc finger-contai 99.0 1.1E-10 2.4E-15 133.1 1.5 157 668-852 154-344 (669)
7 PF13508 Acetyltransf_7: Acety 99.0 4E-09 8.6E-14 94.0 10.8 77 967-1048 3-79 (79)
8 KOG0383 Predicted helicase [Ge 99.0 2.4E-10 5.1E-15 138.3 2.9 142 734-918 1-149 (696)
9 KOG1244 Predicted transcriptio 98.9 1.7E-10 3.6E-15 124.4 0.9 83 658-763 245-332 (336)
10 PF00583 Acetyltransf_1: Acety 98.9 5.7E-09 1.2E-13 92.1 10.0 74 973-1047 2-83 (83)
11 KOG0955 PHD finger protein BR1 98.9 8.5E-10 1.9E-14 137.9 4.2 121 712-848 214-367 (1051)
12 KOG1512 PHD Zn-finger protein 98.9 6E-10 1.3E-14 120.7 2.0 91 716-864 257-361 (381)
13 PF13673 Acetyltransf_10: Acet 98.9 1.4E-08 3E-13 95.0 10.5 74 967-1046 44-117 (117)
14 PF15446 zf-PHD-like: PHD/FYVE 98.7 3.7E-09 8.1E-14 108.0 2.0 103 719-845 1-143 (175)
15 KOG0954 PHD finger protein [Ge 98.7 3.6E-09 7.7E-14 125.8 2.2 135 715-867 269-440 (893)
16 KOG1512 PHD Zn-finger protein 98.7 3.6E-09 7.9E-14 114.7 1.3 99 639-761 260-362 (381)
17 PTZ00330 acetyltransferase; Pr 98.7 8.1E-08 1.8E-12 93.6 10.6 83 968-1051 53-141 (147)
18 PRK10146 aminoalkylphosphonic 98.7 7.5E-08 1.6E-12 93.5 9.0 80 970-1050 50-137 (144)
19 PLN02706 glucosamine 6-phospha 98.6 1.4E-07 3.1E-12 92.9 10.4 82 968-1050 54-143 (150)
20 PLN02825 amino-acid N-acetyltr 98.6 1.1E-07 2.3E-12 113.4 11.2 103 970-1076 410-514 (515)
21 cd02169 Citrate_lyase_ligase C 98.6 1E-07 2.2E-12 106.8 9.5 74 971-1050 10-83 (297)
22 PF13527 Acetyltransf_9: Acety 98.6 2.6E-07 5.6E-12 88.2 10.7 111 926-1049 10-127 (127)
23 PRK07757 acetyltransferase; Pr 98.6 1.6E-07 3.4E-12 92.8 9.5 82 971-1055 45-126 (152)
24 PRK07922 N-acetylglutamate syn 98.6 1.6E-07 3.5E-12 96.3 9.8 79 970-1051 48-127 (169)
25 PRK03624 putative acetyltransf 98.6 1.8E-07 3.9E-12 89.0 8.6 82 968-1051 46-130 (140)
26 COG2153 ElaA Predicted acyltra 98.5 1.9E-07 4.1E-12 94.1 7.8 84 970-1054 53-139 (155)
27 TIGR01890 N-Ac-Glu-synth amino 98.5 3.3E-07 7.3E-12 107.0 10.8 86 971-1058 326-412 (429)
28 TIGR00124 cit_ly_ligase [citra 98.5 4.8E-07 1E-11 102.9 10.0 82 966-1053 30-111 (332)
29 TIGR01575 rimI ribosomal-prote 98.5 8E-07 1.7E-11 83.8 9.8 80 970-1051 34-116 (131)
30 PRK10975 TDP-fucosamine acetyl 98.4 8.9E-07 1.9E-11 91.9 9.9 83 967-1050 102-187 (194)
31 TIGR02382 wecD_rffC TDP-D-fuco 98.4 9.6E-07 2.1E-11 91.7 10.0 80 971-1051 103-185 (191)
32 PRK05279 N-acetylglutamate syn 98.4 8.2E-07 1.8E-11 104.0 10.4 85 970-1056 337-422 (441)
33 KOG4299 PHD Zn-finger protein 98.4 1.8E-07 4E-12 110.9 4.7 49 807-864 255-303 (613)
34 PRK09491 rimI ribosomal-protei 98.4 2.1E-06 4.6E-11 84.4 10.8 84 966-1051 39-125 (146)
35 PRK12308 bifunctional arginino 98.4 9.6E-07 2.1E-11 107.7 9.9 83 970-1055 506-588 (614)
36 TIGR03827 GNAT_ablB putative b 98.4 1.3E-06 2.9E-11 95.7 9.4 85 966-1051 157-245 (266)
37 KOG0825 PHD Zn-finger protein 98.3 1.4E-07 3E-12 112.9 1.5 138 717-867 123-267 (1134)
38 PRK13688 hypothetical protein; 98.3 3E-06 6.4E-11 86.8 9.2 76 971-1052 49-134 (156)
39 PRK10140 putative acetyltransf 98.3 4.2E-06 9.1E-11 82.6 9.8 84 967-1052 51-142 (162)
40 PRK09831 putative acyltransfer 98.3 2.7E-06 5.7E-11 84.4 8.1 73 970-1053 56-128 (147)
41 PHA00673 acetyltransferase dom 98.2 9E-06 1.9E-10 83.5 10.7 83 967-1050 55-145 (154)
42 KOG4323 Polycomb-like PHD Zn-f 98.2 1E-06 2.2E-11 102.8 4.2 150 716-879 82-237 (464)
43 KOG0383 Predicted helicase [Ge 98.1 1.3E-06 2.8E-11 106.6 4.1 50 715-764 45-96 (696)
44 KOG4443 Putative transcription 98.1 9.3E-07 2E-11 105.3 2.1 101 716-872 17-127 (694)
45 TIGR03448 mycothiol_MshD mycot 98.1 1.2E-05 2.6E-10 88.1 9.5 85 966-1051 199-288 (292)
46 TIGR02406 ectoine_EctA L-2,4-d 98.1 1.7E-05 3.7E-10 80.3 9.3 82 968-1050 40-127 (157)
47 KOG3139 N-acetyltransferase [G 98.0 2.1E-05 4.6E-10 80.8 9.9 74 978-1052 68-147 (165)
48 smart00258 SAND SAND domain. 98.0 2.8E-06 6.1E-11 76.9 3.1 63 633-703 2-68 (73)
49 TIGR03448 mycothiol_MshD mycot 98.0 2E-05 4.3E-10 86.4 10.1 81 968-1051 47-128 (292)
50 KOG3396 Glucosamine-phosphate 98.0 1.7E-05 3.6E-10 79.5 8.0 83 967-1050 53-143 (150)
51 TIGR03103 trio_acet_GNAT GNAT- 98.0 2.2E-05 4.8E-10 94.8 10.3 85 966-1051 122-217 (547)
52 PF13420 Acetyltransf_4: Acety 98.0 5.7E-05 1.2E-09 74.4 10.9 82 968-1051 51-139 (155)
53 cd04301 NAT_SF N-Acyltransfera 98.0 3.5E-05 7.6E-10 62.1 7.8 61 970-1030 2-64 (65)
54 COG0456 RimI Acetyltransferase 97.9 2.5E-05 5.4E-10 78.4 8.1 76 977-1053 72-156 (177)
55 PHA01807 hypothetical protein 97.9 2.8E-05 6E-10 79.7 8.3 75 968-1042 54-135 (153)
56 PRK10514 putative acetyltransf 97.9 3.4E-05 7.3E-10 75.4 8.4 75 973-1055 56-130 (145)
57 PRK01346 hypothetical protein; 97.9 3.7E-05 8E-10 88.9 10.0 81 969-1052 49-137 (411)
58 KOG1473 Nucleosome remodeling 97.9 3E-06 6.5E-11 105.1 0.4 130 713-867 340-480 (1414)
59 KOG4443 Putative transcription 97.8 5.8E-06 1.2E-10 98.8 1.9 140 659-843 35-180 (694)
60 PRK15130 spermidine N1-acetylt 97.8 9E-05 2E-09 75.9 10.1 82 968-1051 58-145 (186)
61 PRK10562 putative acetyltransf 97.8 5.9E-05 1.3E-09 74.4 8.4 76 970-1052 51-126 (145)
62 PF08445 FR47: FR47-like prote 97.8 0.0001 2.2E-09 68.2 9.0 74 976-1051 7-82 (86)
63 PF13523 Acetyltransf_8: Acety 97.8 0.00017 3.7E-09 71.4 10.7 87 965-1052 46-142 (152)
64 TIGR01686 FkbH FkbH-like domai 97.8 8.6E-05 1.9E-09 83.8 9.5 82 966-1049 230-319 (320)
65 TIGR03585 PseH pseudaminic aci 97.8 0.00015 3.4E-09 71.3 10.1 81 970-1053 54-140 (156)
66 PF00628 PHD: PHD-finger; Int 97.7 1E-05 2.2E-10 67.5 1.1 43 719-761 1-50 (51)
67 PF01342 SAND: SAND domain; I 97.7 3.7E-06 7.9E-11 77.9 -2.1 67 629-703 6-77 (82)
68 PF00628 PHD: PHD-finger; Int 97.7 9.6E-06 2.1E-10 67.6 -0.0 48 808-864 2-49 (51)
69 TIGR01211 ELP3 histone acetylt 97.7 0.00012 2.5E-09 88.2 8.8 77 974-1051 421-516 (522)
70 COG3153 Predicted acetyltransf 97.6 0.00028 6.1E-09 73.8 10.4 104 970-1083 49-157 (171)
71 COG3393 Predicted acetyltransf 97.6 0.00013 2.9E-09 80.2 8.4 85 966-1051 176-262 (268)
72 smart00249 PHD PHD zinc finger 97.6 4.8E-05 1E-09 60.7 3.1 41 719-759 1-47 (47)
73 PF13718 GNAT_acetyltr_2: GNAT 97.6 0.00033 7.1E-09 74.7 10.0 88 963-1051 23-176 (196)
74 PRK10809 ribosomal-protein-S5- 97.5 0.0005 1.1E-08 71.1 9.7 83 967-1051 77-166 (194)
75 smart00249 PHD PHD zinc finger 97.5 0.00011 2.3E-09 58.7 3.5 45 808-861 2-46 (47)
76 PRK10151 ribosomal-protein-L7/ 97.4 0.0011 2.4E-08 67.6 10.4 80 971-1052 71-156 (179)
77 PF13302 Acetyltransf_3: Acety 97.3 0.0014 3.1E-08 63.1 10.3 80 966-1047 55-142 (142)
78 COG1247 Sortase and related ac 97.3 0.0013 2.7E-08 68.9 10.4 116 959-1079 44-167 (169)
79 KOG0957 PHD finger protein [Ge 97.3 8.2E-05 1.8E-09 86.5 1.2 124 718-846 120-277 (707)
80 KOG1973 Chromatin remodeling p 97.2 0.00012 2.6E-09 81.6 1.7 44 718-761 220-267 (274)
81 KOG3397 Acetyltransferases [Ge 97.2 0.00065 1.4E-08 70.7 6.6 86 969-1056 57-146 (225)
82 COG5034 TNG2 Chromatin remodel 97.1 0.00022 4.7E-09 77.7 2.3 45 806-865 222-269 (271)
83 KOG0825 PHD Zn-finger protein 97.0 0.00027 5.9E-09 85.7 2.1 45 717-761 215-265 (1134)
84 COG5034 TNG2 Chromatin remodel 96.9 0.0004 8.7E-09 75.7 2.2 46 715-761 219-269 (271)
85 KOG1973 Chromatin remodeling p 96.8 0.00051 1.1E-08 76.6 1.5 35 824-865 230-267 (274)
86 KOG3216 Diamine acetyltransfer 96.8 0.0089 1.9E-07 61.5 10.0 121 923-1051 17-146 (163)
87 PF13831 PHD_2: PHD-finger; PD 96.6 0.0005 1.1E-08 54.6 -0.4 34 727-760 2-36 (36)
88 KOG0957 PHD finger protein [Ge 96.4 0.0012 2.6E-08 77.1 1.1 47 806-863 545-595 (707)
89 COG3053 CitC Citrate lyase syn 96.3 0.014 3E-07 65.4 8.5 80 967-1052 37-116 (352)
90 PF08444 Gly_acyl_tr_C: Aralky 96.3 0.0076 1.7E-07 57.1 5.5 75 971-1050 3-79 (89)
91 PF12746 GNAT_acetyltran: GNAT 96.1 0.032 7E-07 62.4 10.4 76 973-1050 171-246 (265)
92 PF12568 DUF3749: Acetyltransf 96.1 0.037 8.1E-07 55.6 9.8 82 965-1051 38-125 (128)
93 KOG4144 Arylalkylamine N-acety 96.0 0.0066 1.4E-07 62.5 3.8 61 990-1051 100-161 (190)
94 KOG0955 PHD finger protein BR1 95.9 0.0046 9.9E-08 79.2 3.2 56 804-870 218-273 (1051)
95 COG0454 WecD Histone acetyltra 95.8 0.01 2.3E-07 50.4 4.1 44 997-1046 87-130 (156)
96 cd04718 BAH_plant_2 BAH, or Br 95.8 0.005 1.1E-07 63.1 2.1 26 835-865 1-26 (148)
97 COG1444 Predicted P-loop ATPas 95.7 0.014 3E-07 72.9 5.7 59 992-1052 532-592 (758)
98 PF14542 Acetyltransf_CG: GCN5 95.6 0.047 1E-06 50.1 7.7 57 971-1028 3-59 (78)
99 KOG0956 PHD finger protein AF1 95.6 0.0069 1.5E-07 73.4 2.7 50 805-865 5-56 (900)
100 COG1670 RimL Acetyltransferase 95.5 0.074 1.6E-06 52.9 9.3 89 965-1055 64-162 (187)
101 COG2388 Predicted acetyltransf 95.5 0.049 1.1E-06 52.7 7.6 66 965-1034 15-80 (99)
102 cd04718 BAH_plant_2 BAH, or Br 95.5 0.0073 1.6E-07 61.9 2.0 25 738-762 1-27 (148)
103 KOG2488 Acetyltransferase (GNA 95.3 0.049 1.1E-06 58.0 7.3 84 967-1051 93-182 (202)
104 KOG1245 Chromatin remodeling c 94.8 0.0077 1.7E-07 79.7 -0.3 56 802-868 1105-1160(1404)
105 KOG4323 Polycomb-like PHD Zn-f 94.7 0.012 2.6E-07 69.7 1.0 43 720-762 171-224 (464)
106 COG4552 Eis Predicted acetyltr 94.5 0.051 1.1E-06 62.5 5.3 84 961-1051 35-127 (389)
107 KOG3138 Predicted N-acetyltran 94.3 0.038 8.3E-07 58.9 3.7 61 991-1052 89-153 (187)
108 smart00258 SAND SAND domain. 94.0 0.055 1.2E-06 49.7 3.6 50 442-493 19-69 (73)
109 COG5141 PHD zinc finger-contai 93.2 0.036 7.7E-07 65.4 1.3 47 806-863 194-240 (669)
110 PF13480 Acetyltransf_6: Acety 93.1 0.63 1.4E-05 44.7 9.5 66 967-1033 71-136 (142)
111 KOG0954 PHD finger protein [Ge 93.1 0.039 8.5E-07 67.7 1.4 52 804-866 270-321 (893)
112 KOG1245 Chromatin remodeling c 93.1 0.022 4.7E-07 75.7 -0.9 50 714-763 1105-1159(1404)
113 PF13832 zf-HC5HC2H_2: PHD-zin 93.0 0.058 1.3E-06 51.9 2.1 33 806-846 56-90 (110)
114 PF06852 DUF1248: Protein of u 92.8 0.58 1.3E-05 49.9 9.4 82 968-1051 48-137 (181)
115 PF01342 SAND: SAND domain; I 92.7 0.029 6.3E-07 52.4 -0.3 56 436-493 17-78 (82)
116 TIGR03694 exosort_acyl putativ 92.5 1 2.3E-05 49.6 11.4 123 924-1051 17-200 (241)
117 KOG3235 Subunit of the major N 92.4 0.35 7.6E-06 50.5 7.0 81 971-1051 45-135 (193)
118 COG1243 ELP3 Histone acetyltra 91.2 0.16 3.6E-06 60.2 3.5 51 1000-1051 459-509 (515)
119 KOG3234 Acetyltransferase, (GN 90.9 0.3 6.6E-06 50.9 4.6 59 990-1049 68-129 (173)
120 PF00765 Autoind_synth: Autoin 88.8 2.3 5E-05 45.2 9.4 91 956-1048 34-152 (182)
121 PRK13834 putative autoinducer 88.2 2.7 5.9E-05 45.5 9.6 117 925-1048 17-162 (207)
122 COG3981 Predicted acetyltransf 84.3 1.9 4.1E-05 45.7 5.7 66 967-1034 70-140 (174)
123 PF13831 PHD_2: PHD-finger; PD 84.3 0.22 4.9E-06 39.8 -0.8 30 824-859 2-32 (36)
124 cd04264 DUF619-NAGS DUF619 dom 82.6 2.7 5.8E-05 40.8 5.6 48 973-1020 14-63 (99)
125 PF07897 DUF1675: Protein of u 81.3 3.5 7.6E-05 46.9 6.8 67 406-479 210-283 (284)
126 PF12861 zf-Apc11: Anaphase-pr 79.1 0.74 1.6E-05 43.6 0.5 47 716-763 20-81 (85)
127 PF02474 NodA: Nodulation prot 77.8 3.3 7.1E-05 44.0 4.8 53 991-1045 85-137 (196)
128 PF13771 zf-HC5HC2H: PHD-like 77.7 0.84 1.8E-05 42.3 0.4 49 806-862 37-89 (90)
129 TIGR03019 pepcterm_femAB FemAB 74.4 9.1 0.0002 43.6 7.7 80 970-1050 198-280 (330)
130 PF07227 DUF1423: Protein of u 74.2 2.9 6.3E-05 49.9 3.7 63 808-874 131-203 (446)
131 KOG1081 Transcription factor N 72.7 3.8 8.1E-05 49.6 4.2 48 713-761 85-132 (463)
132 cd04265 DUF619-NAGS-U DUF619 d 71.4 7.6 0.00016 37.8 5.2 48 973-1020 15-63 (99)
133 PF13880 Acetyltransf_13: ESCO 71.1 3 6.4E-05 38.3 2.2 28 993-1020 7-34 (70)
134 PF14446 Prok-RING_1: Prokaryo 70.0 2.3 5.1E-05 37.2 1.2 28 718-745 6-37 (54)
135 PF07897 DUF1675: Protein of u 69.0 3.1 6.6E-05 47.4 2.2 32 659-690 252-283 (284)
136 COG3818 Predicted acetyltransf 67.7 13 0.00028 38.2 6.0 58 1000-1057 93-154 (167)
137 PF14446 Prok-RING_1: Prokaryo 66.0 3.9 8.5E-05 35.8 1.8 35 806-845 6-40 (54)
138 KOG1473 Nucleosome remodeling 65.0 3.5 7.5E-05 53.7 1.8 45 806-864 345-389 (1414)
139 PF13639 zf-RING_2: Ring finge 59.3 1 2.2E-05 36.6 -2.8 40 718-760 1-44 (44)
140 PF04377 ATE_C: Arginine-tRNA- 58.9 39 0.00084 34.4 7.7 63 966-1029 38-100 (128)
141 COG5628 Predicted acetyltransf 58.0 35 0.00076 34.8 7.0 87 968-1059 38-132 (143)
142 KOG2752 Uncharacterized conser 57.8 9 0.0002 44.0 3.3 109 719-844 57-167 (345)
143 PF11793 FANCL_C: FANCL C-term 56.6 6.2 0.00013 35.9 1.5 46 718-763 3-65 (70)
144 KOG4628 Predicted E3 ubiquitin 56.6 7 0.00015 45.7 2.3 45 718-763 230-277 (348)
145 PF15446 zf-PHD-like: PHD/FYVE 55.4 6 0.00013 41.9 1.3 34 808-844 2-35 (175)
146 PRK00756 acyltransferase NodA; 55.4 19 0.0004 38.4 4.8 42 991-1033 85-126 (196)
147 KOG4135 Predicted phosphogluco 55.0 24 0.00053 37.0 5.5 59 991-1049 107-168 (185)
148 PRK14852 hypothetical protein; 53.1 37 0.00079 44.9 8.0 85 968-1052 76-182 (989)
149 PF01853 MOZ_SAS: MOZ/SAS fami 49.9 57 0.0012 35.4 7.6 87 923-1024 25-113 (188)
150 PF13444 Acetyltransf_5: Acety 49.7 33 0.00072 32.7 5.3 25 989-1013 76-100 (101)
151 KOG2535 RNA polymerase II elon 47.6 21 0.00045 41.8 4.1 50 1002-1052 498-548 (554)
152 PF12678 zf-rbx1: RING-H2 zinc 46.1 4.5 9.7E-05 36.9 -1.1 26 733-760 48-73 (73)
153 PF12261 T_hemolysin: Thermost 43.1 42 0.00091 36.1 5.3 56 989-1049 85-140 (179)
154 PLN03238 probable histone acet 40.8 57 0.0012 37.6 6.1 86 924-1024 101-188 (290)
155 KOG1428 Inhibitor of type V ad 39.0 7.5 0.00016 51.7 -1.1 52 713-764 3482-3544(3738)
156 PF13832 zf-HC5HC2H_2: PHD-zin 39.0 16 0.00034 35.2 1.3 30 716-745 54-86 (110)
157 PF13901 DUF4206: Domain of un 39.0 28 0.00062 37.7 3.4 71 474-546 102-198 (202)
158 PRK01305 arginyl-tRNA-protein 38.8 1.4E+02 0.0031 33.5 8.8 58 971-1029 148-205 (240)
159 KOG2747 Histone acetyltransfer 38.6 27 0.00059 41.6 3.4 75 923-1017 207-286 (396)
160 PHA02929 N1R/p28-like protein; 38.5 11 0.00024 42.0 0.3 47 716-764 173-227 (238)
161 PTZ00064 histone acetyltransfe 38.3 36 0.00077 41.7 4.3 87 923-1024 329-417 (552)
162 COG3916 LasI N-acyl-L-homoseri 37.7 1.5E+02 0.0033 32.8 8.5 81 965-1046 51-158 (209)
163 KOG1734 Predicted RING-contain 36.8 9.1 0.0002 43.2 -0.7 48 715-762 222-279 (328)
164 KOG1829 Uncharacterized conser 36.1 12 0.00026 46.5 0.0 49 807-868 513-561 (580)
165 KOG3612 PHD Zn-finger protein 35.3 28 0.00062 42.7 2.9 47 715-761 58-107 (588)
166 PLN03239 histone acetyltransfe 34.8 52 0.0011 38.7 4.8 32 993-1024 215-246 (351)
167 PF13771 zf-HC5HC2H: PHD-like 34.4 21 0.00045 33.1 1.3 29 717-745 36-67 (90)
168 PF10497 zf-4CXXC_R1: Zinc-fin 33.8 11 0.00024 37.0 -0.6 52 806-865 8-69 (105)
169 KOG1246 DNA-binding protein ju 33.7 44 0.00094 43.9 4.5 47 716-762 154-204 (904)
170 cd00024 CHROMO Chromatin organ 33.4 26 0.00055 29.2 1.6 22 901-922 19-40 (55)
171 PF13901 DUF4206: Domain of un 33.2 31 0.00067 37.4 2.5 35 807-842 154-188 (202)
172 PF01233 NMT: Myristoyl-CoA:pr 32.8 1.2E+02 0.0026 32.4 6.6 61 967-1027 77-146 (162)
173 PF04958 AstA: Arginine N-succ 31.8 59 0.0013 38.3 4.6 109 919-1047 29-184 (342)
174 PLN00104 MYST -like histone ac 30.7 52 0.0011 40.0 4.0 82 924-1020 252-335 (450)
175 KOG2036 Predicted P-loop ATPas 30.1 42 0.00091 42.7 3.2 29 992-1020 615-643 (1011)
176 cd00162 RING RING-finger (Real 29.4 13 0.00029 28.7 -0.8 41 720-761 2-43 (45)
177 TIGR03244 arg_catab_AstA argin 29.0 91 0.002 36.7 5.5 49 966-1014 54-140 (336)
178 TIGR03245 arg_AOST_alph argini 28.1 90 0.002 36.7 5.3 49 966-1014 55-141 (336)
179 TIGR03243 arg_catab_AOST argin 27.8 94 0.002 36.6 5.3 49 966-1014 54-140 (335)
180 PRK10456 arginine succinyltran 27.3 91 0.002 36.8 5.1 49 966-1014 56-142 (344)
181 PF11793 FANCL_C: FANCL C-term 27.3 29 0.00064 31.5 1.0 34 807-843 4-39 (70)
182 smart00298 CHROMO Chromatin or 27.1 45 0.00098 27.5 2.0 24 901-924 17-40 (55)
183 KOG0804 Cytoplasmic Zn-finger 27.0 25 0.00054 42.3 0.6 42 716-761 174-219 (493)
184 KOG1701 Focal adhesion adaptor 25.9 11 0.00023 45.1 -2.6 35 718-762 275-311 (468)
185 PF05502 Dynactin_p62: Dynacti 25.3 57 0.0012 40.0 3.2 32 728-762 4-35 (483)
186 PHA02825 LAP/PHD finger-like p 25.0 21 0.00047 37.6 -0.4 50 714-763 5-58 (162)
187 PHA02862 5L protein; Provision 24.9 18 0.00038 37.8 -1.0 48 717-764 2-53 (156)
188 KOG1829 Uncharacterized conser 23.1 20 0.00043 44.7 -1.2 34 517-550 339-379 (580)
189 COG5194 APC11 Component of SCF 22.6 17 0.00037 34.4 -1.4 29 733-763 52-80 (88)
190 smart00184 RING Ring finger. E 22.5 16 0.00034 27.2 -1.5 26 720-745 1-26 (39)
191 KOG4628 Predicted E3 ubiquitin 22.4 44 0.00095 39.4 1.4 46 806-865 230-275 (348)
192 KOG2779 N-myristoyl transferas 21.6 3.1E+02 0.0067 32.8 7.8 127 905-1044 80-226 (421)
193 COG5027 SAS2 Histone acetyltra 21.5 44 0.00096 39.3 1.2 76 923-1015 207-286 (395)
194 KOG1246 DNA-binding protein ju 21.5 68 0.0015 42.2 3.0 49 806-866 156-204 (904)
195 PF00385 Chromo: Chromo (CHRro 21.4 20 0.00044 30.2 -1.1 20 902-921 19-38 (55)
196 KOG1632 Uncharacterized PHD Zn 20.3 58 0.0013 38.3 1.9 44 825-872 74-119 (345)
No 1
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=99.16 E-value=2e-11 Score=143.33 Aligned_cols=150 Identities=25% Similarity=0.529 Sum_probs=99.0
Q ss_pred ccccccccccC-----CceEecCC--CCCccccccCCCCCCCCCCccccccccc-----------ccccceeeccccccc
Q 001383 716 NDDLCGICMDG-----GDLLCCDS--CPRAFHIDCVSLPGIPSGTWHCRYCMNT-----------FQKEKFVEYNANARA 777 (1088)
Q Consensus 716 ndd~C~VC~dg-----GeLl~CD~--C~rafH~~Cl~~~~vP~G~W~C~~C~~~-----------~~Kek~v~~~~na~a 777 (1088)
...-|.||.|. ..|++||+ |.-+.|+.|+++-++|.|.|||+.|... .+++....+..+..|
T Consensus 4 MVGGCCVCSDErGWaeNPLVYCDG~nCsVAVHQaCYGIvqVPtGpWfCrKCesqeraarvrCeLCP~kdGALKkTDn~GW 83 (900)
T KOG0956|consen 4 MVGGCCVCSDERGWAENPLVYCDGHNCSVAVHQACYGIVQVPTGPWFCRKCESQERAARVRCELCPHKDGALKKTDNGGW 83 (900)
T ss_pred cccceeeecCcCCCccCceeeecCCCceeeeehhcceeEecCCCchhhhhhhhhhhhccceeecccCcccceecccCCCc
Confidence 44579999974 47999997 9999999999999999999999999642 123333333333333
Q ss_pred c----------ccccccccccccchheeeeccCC--CCCCCcceeccCCCCCCCCCCCcceeecC--CCCCcCCCCCCCC
Q 001383 778 A----------GRIEGVDPFAQMVSRCIRIVQTP--DTELGGCVLCRGRDFCKSRFGRRTVILCD--QCEREYHVGCLKD 843 (1088)
Q Consensus 778 a----------grveGvdpieqi~~rciRivk~~--d~e~~~C~vCk~~d~sksgf~~g~LL~CD--qC~raYHv~CL~p 843 (1088)
+ -++..+..++.|. ++.+ |.....|+||.+.+... ....+.++.|+ .|.++||+.|...
T Consensus 84 AHVVCALYIPEVrFgNV~TMEPIi------Lq~VP~dRfnKtCYIC~E~Grpn-kA~~GACMtCNKs~CkqaFHVTCAQ~ 156 (900)
T KOG0956|consen 84 AHVVCALYIPEVRFGNVHTMEPII------LQDVPHDRFNKTCYICNEEGRPN-KAAKGACMTCNKSGCKQAFHVTCAQR 156 (900)
T ss_pred eEEEEEeeccceeeccccccccee------eccCchhhhcceeeeecccCCcc-ccccccceecccccchhhhhhhHhhh
Confidence 2 1222232333321 2222 22346799999864322 22346799998 7999999999998
Q ss_pred CCCCCccc--CCCCCcccCCCchhhHHHHHHH
Q 001383 844 HGMEDLQE--LPKGKWLCCADCKRINLALQKL 873 (1088)
Q Consensus 844 ~g~~~LkE--iP~g~WfCp~~C~~I~~kLqkL 873 (1088)
.|+-.-++ +-+.--|| ..|+..+.+|.+-
T Consensus 157 ~GLLCEE~gn~~dNVKYC-GYCk~HfsKlkk~ 187 (900)
T KOG0956|consen 157 AGLLCEEEGNISDNVKYC-GYCKYHFSKLKKS 187 (900)
T ss_pred hccceeccccccccceec-hhHHHHHHHhhcC
Confidence 87644333 11223588 6999999988763
No 2
>COG1246 ArgA N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism]
Probab=99.11 E-value=9.6e-11 Score=118.71 Aligned_cols=90 Identities=17% Similarity=0.246 Sum_probs=80.0
Q ss_pred ceeceEEEEEEeCCEEEEEEEEE-EecCceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHH
Q 001383 963 DYHGMYCAILTVNQVVVSAGIFR-IFGQELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSASEAQAIWT 1041 (1088)
Q Consensus 963 ~f~GfY~~VL~~~~evVsaA~lr-i~g~~~AEip~VAT~~~~RgqG~gr~L~~aIE~~L~~lgV~~LvLpA~~eA~~~w~ 1041 (1088)
++..|+++ +.+|.+||||.++ +.+.+++||..|||+|+||++|+|..|+..|+..++.+|++++++.+. -.+-|+
T Consensus 38 ~i~dF~i~--E~~g~viGC~aL~~~~~~~~gE~~~laV~pd~r~~G~G~~Ll~~~~~~Ar~~gi~~lf~LTt--~~~~~F 113 (153)
T COG1246 38 EIDDFTII--ERDGKVIGCAALHPVLEEDLGELRSLAVHPDYRGSGRGERLLERLLADARELGIKELFVLTT--RSPEFF 113 (153)
T ss_pred HHhhheee--eeCCcEEEEEeecccCccCeeeEEEEEECHHhcCCCcHHHHHHHHHHHHHHcCCceeeeeec--ccHHHH
Confidence 56677765 8899999999999 789999999999999999999999999999999999999999999984 256677
Q ss_pred hccCcEEcCHHHHHh
Q 001383 1042 NKFGFSMMTEEEQNK 1056 (1088)
Q Consensus 1042 ~kfGF~~i~~~el~~ 1056 (1088)
.++||+.++..++..
T Consensus 114 ~~~GF~~vd~~~LP~ 128 (153)
T COG1246 114 AERGFTRVDKDELPE 128 (153)
T ss_pred HHcCCeECccccCCH
Confidence 779999999966654
No 3
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=99.02 E-value=6.9e-10 Score=130.95 Aligned_cols=46 Identities=43% Similarity=1.234 Sum_probs=41.6
Q ss_pred cccccccccCCce---EecCCCCCccccccCCCC----CCCCCCccccccccc
Q 001383 717 DDLCGICMDGGDL---LCCDSCPRAFHIDCVSLP----GIPSGTWHCRYCMNT 762 (1088)
Q Consensus 717 dd~C~VC~dgGeL---l~CD~C~rafH~~Cl~~~----~vP~G~W~C~~C~~~ 762 (1088)
.++|..|+..|.. +|||+||++||+.||.|| .+|.|.|+|+.|...
T Consensus 253 ~~fCsaCn~~~~F~~~i~CD~Cp~sFH~~CLePPl~~eniP~g~W~C~ec~~k 305 (613)
T KOG4299|consen 253 EDFCSACNGSGLFNDIICCDGCPRSFHQTCLEPPLEPENIPPGSWFCPECKIK 305 (613)
T ss_pred HHHHHHhCCccccccceeecCCchHHHHhhcCCCCCcccCCCCccccCCCeee
Confidence 5699999998866 999999999999999877 689999999999864
No 4
>PRK10314 putative acyltransferase; Provisional
Probab=99.00 E-value=1.3e-09 Score=110.27 Aligned_cols=115 Identities=18% Similarity=0.100 Sum_probs=87.1
Q ss_pred HHHHHHHhhhhccCcccccCcCCCccccccccccCCCccee--ceEEEEEEeCCEEEEEEEEEEecC--ceEEEeeeeec
Q 001383 925 LLSKAVSIFHDRFDPIIESASKLDLIPAMVYGRSHRGQDYH--GMYCAILTVNQVVVSAGIFRIFGQ--ELAELPLVATS 1000 (1088)
Q Consensus 925 ~LavAl~If~EcFdPIiD~~Sg~DLIp~MVYg~~~~rl~f~--GfY~~VL~~~~evVsaA~lri~g~--~~AEip~VAT~ 1000 (1088)
.+..|+.|=++.|-+= -+.+ |. ++...|.. .++ +++..++++||+|+++..+. ..++|..|||+
T Consensus 16 ~~~~~~~lR~~VF~~e----q~~~------~~-e~D~~d~~~~~~h-~~~~~~~~~vg~~r~~~~~~~~~~~~i~rv~V~ 83 (153)
T PRK10314 16 QLYALLQLRCAVFVVE----QNCP------YQ-DIDGDDLTGDNRH-ILGWKNDELVAYARILKSDDDLEPVVIGRVIVS 83 (153)
T ss_pred HHHHHHHHHHHHhhhh----cCCC------cc-ccCCCCCCCCcEE-EEEEECCEEEEEEEEecCCCCCCCEEEEEEEEC
Confidence 4677778878888321 1111 11 22233331 233 34567899999999987543 36899999999
Q ss_pred cCcccCChhHHHHHHHHHHhhhc-CccEEEecChhhhHHHHHhccCcEEcCHH
Q 001383 1001 NDCQGQGYFQSLFCCIEKLLGFL-NVKTLVLPSASEAQAIWTNKFGFSMMTEE 1052 (1088)
Q Consensus 1001 ~~~RgqG~gr~L~~aIE~~L~~l-gV~~LvLpA~~eA~~~w~~kfGF~~i~~~ 1052 (1088)
++|||+|+|++||..+++.++.. +...++|.|+..|++||.+ |||..+++.
T Consensus 84 ~~~rG~GiG~~Lm~~~~~~~~~~~~~~~i~L~a~~~a~~fY~k-~GF~~~g~~ 135 (153)
T PRK10314 84 EALRGEKVGQQLMSKTLESCTRHWPDKPVYLGAQAHLQNFYQS-FGFIPVTEV 135 (153)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHCCCCcEEEehHHHHHHHHHH-CCCEECCCc
Confidence 99999999999999999998875 7889999999999999999 999999873
No 5
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=98.99 E-value=1.3e-10 Score=125.09 Aligned_cols=94 Identities=29% Similarity=0.879 Sum_probs=77.5
Q ss_pred ccccccccccc----------CCceEecCCCCCccccccCCCC-----CCCCCCcccccccccccccceeeccccccccc
Q 001383 715 ENDDLCGICMD----------GGDLLCCDSCPRAFHIDCVSLP-----GIPSGTWHCRYCMNTFQKEKFVEYNANARAAG 779 (1088)
Q Consensus 715 ~ndd~C~VC~d----------gGeLl~CD~C~rafH~~Cl~~~-----~vP~G~W~C~~C~~~~~Kek~v~~~~na~aag 779 (1088)
....+|..|.. +.+|+.|..|.|+-|..||..+ .+....|+|..|+.
T Consensus 222 ~Pn~YCDFclgdsr~nkkt~~peelvscsdcgrsghpsclqft~nm~~avk~yrwqcieck~------------------ 283 (336)
T KOG1244|consen 222 QPNPYCDFCLGDSRENKKTGMPEELVSCSDCGRSGHPSCLQFTANMIAAVKTYRWQCIECKY------------------ 283 (336)
T ss_pred cCCcccceeccccccccccCCchhhcchhhcCCCCCcchhhhhHHHHHHHHhheeeeeecce------------------
Confidence 45567888863 2489999999999999999754 45678899999984
Q ss_pred cccccccccccchheeeeccCCCCCCCcceeccCCCCCCCCCCCcceeecCCCCCcCCCCCCCCCCCCCcccCCCCCccc
Q 001383 780 RIEGVDPFAQMVSRCIRIVQTPDTELGGCVLCRGRDFCKSRFGRRTVILCDQCEREYHVGCLKDHGMEDLQELPKGKWLC 859 (1088)
Q Consensus 780 rveGvdpieqi~~rciRivk~~d~e~~~C~vCk~~d~sksgf~~g~LL~CDqC~raYHv~CL~p~g~~~LkEiP~g~WfC 859 (1088)
|.+|+.++ +++.|++||.|+|.||++||. |++.+-|+|.|-|
T Consensus 284 ----------------------------csicgtse------nddqllfcddcdrgyhmycls----ppm~eppegswsc 325 (336)
T KOG1244|consen 284 ----------------------------CSICGTSE------NDDQLLFCDDCDRGYHMYCLS----PPMVEPPEGSWSC 325 (336)
T ss_pred ----------------------------eccccCcC------CCceeEeecccCCceeeEecC----CCcCCCCCCchhH
Confidence 99998754 357899999999999999999 4688889999999
Q ss_pred CCCchh
Q 001383 860 CADCKR 865 (1088)
Q Consensus 860 p~~C~~ 865 (1088)
.-|-.
T Consensus 326 -~KOG~ 330 (336)
T KOG1244|consen 326 -HLCLE 330 (336)
T ss_pred -HHHHH
Confidence 45643
No 6
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=98.99 E-value=1.1e-10 Score=133.12 Aligned_cols=157 Identities=27% Similarity=0.534 Sum_probs=100.1
Q ss_pred ccChhhhhhccCcccccccccceeccCCccchhhhhhhccCCCC-CCccccccccccccC-----CceEecCCCCCcccc
Q 001383 668 EVSPSQFEAHAGWASRRKPFQHIYTSNGVSLHELSIKLSLERPF-SSKENDDLCGICMDG-----GDLLCCDSCPRAFHI 741 (1088)
Q Consensus 668 ~~SPSeFE~HAG~~srrkpy~sI~l~nG~SL~dl~~~l~k~~k~-ss~~ndd~C~VC~dg-----GeLl~CD~C~rafH~ 741 (1088)
.+|-.-||+-...-. ..|.+...|.+-+. -..+ .++.-++.|.+|... ..+++||+|+.+.|+
T Consensus 154 ~vS~e~fEii~t~lE----~EWf~~e~~lp~k~-------vepi~~~d~~d~~C~~c~~t~~eN~naiVfCdgC~i~VHq 222 (669)
T COG5141 154 NVSEEAFEIIVTRLE----KEWFFFEHGLPDKH-------VEPIEPSDEFDDICTKCTSTHNENSNAIVFCDGCEICVHQ 222 (669)
T ss_pred hhhHHHHHHHHHHHH----HHHHhhhccCcccc-------ccccCCchhhhhhhHhccccccCCcceEEEecCcchhhhh
Confidence 356666887765322 23444444433110 0112 233477899999843 469999999999999
Q ss_pred ccCCCCCCCCCCcccccccccc--------c--cc--------ceeecccccccc-----ccccccccccccc---hhee
Q 001383 742 DCVSLPGIPSGTWHCRYCMNTF--------Q--KE--------KFVEYNANARAA-----GRIEGVDPFAQMV---SRCI 795 (1088)
Q Consensus 742 ~Cl~~~~vP~G~W~C~~C~~~~--------~--Ke--------k~v~~~~na~aa-----grveGvdpieqi~---~rci 795 (1088)
.|+|++.+|+|.|+|..|.... . .. ..+.|+.+|.+. +...-.+||+.+. ...+
T Consensus 223 ~CYGI~f~peG~WlCrkCi~~~~~i~~C~fCps~dGaFkqT~dgrW~H~iCA~~~pelsF~~l~~~dpI~~i~sVs~srw 302 (669)
T COG5141 223 SCYGIQFLPEGFWLCRKCIYGEYQIRCCSFCPSSDGAFKQTSDGRWGHVICAMFNPELSFGHLLSKDPIDNIASVSSSRW 302 (669)
T ss_pred hcccceecCcchhhhhhhcccccceeEEEeccCCCCceeeccCCchHhHhHHHhcchhccccccccchhhhhcccchhhH
Confidence 9999999999999999996431 1 11 112333344332 2222334443322 2122
Q ss_pred eeccCCCCCCCcceeccCCCCCCCCCCCcceeecC--CCCCcCCCCCCCCCCCCCcccC
Q 001383 796 RIVQTPDTELGGCVLCRGRDFCKSRFGRRTVILCD--QCEREYHVGCLKDHGMEDLQEL 852 (1088)
Q Consensus 796 Rivk~~d~e~~~C~vCk~~d~sksgf~~g~LL~CD--qC~raYHv~CL~p~g~~~LkEi 852 (1088)
...|.+|+.. .|+.++|. .|.++||++|.+..|..++..+
T Consensus 303 ---------kl~C~iCk~~--------~GtcIqCs~~nC~~aYHVtCArrag~f~~~~~ 344 (669)
T COG5141 303 ---------KLGCLICKEF--------GGTCIQCSYFNCTRAYHVTCARRAGYFDLNIY 344 (669)
T ss_pred ---------hheeeEEccc--------Ccceeeecccchhhhhhhhhhhhcchhhhhhh
Confidence 2469999984 47899999 6999999999999987776543
No 7
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=98.98 E-value=4e-09 Score=93.98 Aligned_cols=77 Identities=14% Similarity=0.134 Sum_probs=67.1
Q ss_pred eEEEEEEeCCEEEEEEEEEEecCceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccCc
Q 001383 967 MYCAILTVNQVVVSAGIFRIFGQELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSASEAQAIWTNKFGF 1046 (1088)
Q Consensus 967 fY~~VL~~~~evVsaA~lri~g~~~AEip~VAT~~~~RgqG~gr~L~~aIE~~L~~lgV~~LvLpA~~eA~~~w~~kfGF 1046 (1088)
-+.++++.++++||++.+...+ +.+.|..|||+++|||||+|+.||..+.+.+.. ..+++.+.+.+.+||.+ +||
T Consensus 3 ~~~~~~~~~~~ivG~~~~~~~~-~~~~i~~~~v~~~~rg~Gig~~ll~~~~~~~~~---~~i~l~~~~~~~~fY~~-~GF 77 (79)
T PF13508_consen 3 ERFFVAEDDGEIVGFIRLWPNE-DFAYIGYLAVDPEYRGKGIGSKLLNYLLEKAKS---KKIFLFTNPAAIKFYEK-LGF 77 (79)
T ss_dssp EEEEEEEETTEEEEEEEEEETT-TEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHTC---SEEEEEEEHHHHHHHHH-TTE
T ss_pred cEEEEEEECCEEEEEEEEEEcC-CEEEEEEEEECHHHcCCCHHHHHHHHHHHHcCC---CcEEEEEcHHHHHHHHH-CcC
Confidence 3567789999999999996655 499999999999999999999999999888854 56788888999999999 999
Q ss_pred EE
Q 001383 1047 SM 1048 (1088)
Q Consensus 1047 ~~ 1048 (1088)
++
T Consensus 78 ~~ 79 (79)
T PF13508_consen 78 EE 79 (79)
T ss_dssp EE
T ss_pred CC
Confidence 85
No 8
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=98.96 E-value=2.4e-10 Score=138.30 Aligned_cols=142 Identities=25% Similarity=0.509 Sum_probs=97.2
Q ss_pred CCCCccccccCCCC--CCCCCCcccccccccccccceeeccccccccccccccccccccchheeeeccCCCCCCCcceec
Q 001383 734 SCPRAFHIDCVSLP--GIPSGTWHCRYCMNTFQKEKFVEYNANARAAGRIEGVDPFAQMVSRCIRIVQTPDTELGGCVLC 811 (1088)
Q Consensus 734 ~C~rafH~~Cl~~~--~vP~G~W~C~~C~~~~~Kek~v~~~~na~aagrveGvdpieqi~~rciRivk~~d~e~~~C~vC 811 (1088)
.|+|.||..|+.+. ..|+++|.|+.|....... +..+. . -.+.+...|.+|
T Consensus 1 ~~~r~~~~~~~~p~~~~~~~~~~k~~~~e~~~~~~---------------~~~~~--~----------~~~~~~e~c~ic 53 (696)
T KOG0383|consen 1 TCPRAYHRVCLDPKLKEEPEMDPKCPGCESSSAQV---------------EAKDD--D----------WDDAEQEACRIC 53 (696)
T ss_pred CCCcccCcCCCCcccccCCcCCccCcchhhccccc---------------ccccC--C----------cchhhhhhhhhh
Confidence 48999999999844 4568999999997421110 00000 0 123445689999
Q ss_pred cCCCCCCCCCCCcceeecCCCCCcCCCCCCCCCCCCCcccCCCCCcccCCCc--hhhHHHHHHHhhcCCcCCCCc---hh
Q 001383 812 RGRDFCKSRFGRRTVILCDQCEREYHVGCLKDHGMEDLQELPKGKWLCCADC--KRINLALQKLVDRGEEKLPET---SL 886 (1088)
Q Consensus 812 k~~d~sksgf~~g~LL~CDqC~raYHv~CL~p~g~~~LkEiP~g~WfCp~~C--~~I~~kLqkLVa~g~e~lpds---ll 886 (1088)
.. .++++.||.|+.+||..|+. +++...|.+.|.|+ -| .....+.++++.|.+.+.+.. ..
T Consensus 54 ~~---------~g~~l~c~tC~~s~h~~cl~----~pl~~~p~~~~~c~-Rc~~p~~~~k~~~il~~~~~~~~~~~~~~~ 119 (696)
T KOG0383|consen 54 AD---------GGELLWCDTCPASFHASCLG----PPLTPQPNGEFICP-RCFCPKNAGKIEKILGWRWKPTPKPREGNQ 119 (696)
T ss_pred cC---------CCcEEEeccccHHHHHHccC----CCCCcCCccceeee-eeccCCCcccccccceeEecCCCCccccCc
Confidence 87 46799999999999999998 46788888889997 55 333447788888755444322 22
Q ss_pred hhhhcccccCCCCcccccceeeEEecCCccCC
Q 001383 887 DVIKKKHEESGSDNAVDFDVRWRVLRGKKVDA 918 (1088)
Q Consensus 887 ~~Ikkk~eekg~e~~~e~~VkWqlLSy~~~s~ 918 (1088)
+.+... ..-....++++++|++++|+||+|
T Consensus 120 ~~~~~~--~~~~~~~re~~vk~qg~s~~~c~~ 149 (696)
T KOG0383|consen 120 GVISPR--RSNGIVEREFFVKWQGLSYWHCSW 149 (696)
T ss_pred CccCCc--ccccchhhhcccccccCCccchhH
Confidence 222111 111236789999999999999997
No 9
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=98.95 E-value=1.7e-10 Score=124.36 Aligned_cols=83 Identities=29% Similarity=0.705 Sum_probs=71.7
Q ss_pred CceeeccCCCccChhhhhhccCcccccccccceeccCCccchhhhhhhccCCCCCCcccccccccccc---CCceEecCC
Q 001383 658 FGILCTCCNSEVSPSQFEAHAGWASRRKPFQHIYTSNGVSLHELSIKLSLERPFSSKENDDLCGICMD---GGDLLCCDS 734 (1088)
Q Consensus 658 ~GI~C~CCn~~~SPSeFE~HAG~~srrkpy~sI~l~nG~SL~dl~~~l~k~~k~ss~~ndd~C~VC~d---gGeLl~CD~ 734 (1088)
+.|.|+.|++.-|||+....+.|...-+.|+|.+. ....|.+|+. .++|||||.
T Consensus 245 elvscsdcgrsghpsclqft~nm~~avk~yrwqci-----------------------eck~csicgtsenddqllfcdd 301 (336)
T KOG1244|consen 245 ELVSCSDCGRSGHPSCLQFTANMIAAVKTYRWQCI-----------------------ECKYCSICGTSENDDQLLFCDD 301 (336)
T ss_pred hhcchhhcCCCCCcchhhhhHHHHHHHHhheeeee-----------------------ecceeccccCcCCCceeEeecc
Confidence 37999999999999998888888777778888865 5578999984 468999999
Q ss_pred CCCccccccCCCC--CCCCCCcccccccccc
Q 001383 735 CPRAFHIDCVSLP--GIPSGTWHCRYCMNTF 763 (1088)
Q Consensus 735 C~rafH~~Cl~~~--~vP~G~W~C~~C~~~~ 763 (1088)
|+|+||++||.|+ ..|+|.|+|..|...+
T Consensus 302 cdrgyhmyclsppm~eppegswsc~KOG~~~ 332 (336)
T KOG1244|consen 302 CDRGYHMYCLSPPMVEPPEGSWSCHLCLEEL 332 (336)
T ss_pred cCCceeeEecCCCcCCCCCCchhHHHHHHHH
Confidence 9999999999877 6789999999997544
No 10
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=98.93 E-value=5.7e-09 Score=92.05 Aligned_cols=74 Identities=19% Similarity=0.245 Sum_probs=67.7
Q ss_pred EeCCEEEEEEEEEEecC-----ceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecChh---hhHHHHHhcc
Q 001383 973 TVNQVVVSAGIFRIFGQ-----ELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSAS---EAQAIWTNKF 1044 (1088)
Q Consensus 973 ~~~~evVsaA~lri~g~-----~~AEip~VAT~~~~RgqG~gr~L~~aIE~~L~~lgV~~LvLpA~~---eA~~~w~~kf 1044 (1088)
+.+|++||++.+++... ..+.|..++|+++|||||+|+.||+.+++.++..|+..|++.... .+..||.+ +
T Consensus 2 ~~~~~ivg~~~~~~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~L~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~~~k-~ 80 (83)
T PF00583_consen 2 EEDGQIVGFASLRPPPEPFDHGNHAYIHRLAVDPEYRGQGIGSKLLQAAEEWARKRGIKRIYLDVSPDNPAARRFYEK-L 80 (83)
T ss_dssp EETTEEEEEEEEEEEETTTTTTTEEEEEEEEECGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTGHHHHHHHHH-T
T ss_pred cCCCEEEEEEEEEECCCccccCCEEEEEEEEEcHHHhhCCCchhhhhhhhhhHHhcCccEEEEEEeCCCHHHHHHHHH-c
Confidence 68999999999999886 599999999999999999999999999999999999999986554 45699998 9
Q ss_pred CcE
Q 001383 1045 GFS 1047 (1088)
Q Consensus 1045 GF~ 1047 (1088)
||+
T Consensus 81 Gf~ 83 (83)
T PF00583_consen 81 GFE 83 (83)
T ss_dssp TEE
T ss_pred CCC
Confidence 996
No 11
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=98.89 E-value=8.5e-10 Score=137.92 Aligned_cols=121 Identities=28% Similarity=0.622 Sum_probs=88.2
Q ss_pred CCccccccccccccC-----CceEecCCCCCccccccCCCCCCCCCCccccccccccccc------------------ce
Q 001383 712 SSKENDDLCGICMDG-----GDLLCCDSCPRAFHIDCVSLPGIPSGTWHCRYCMNTFQKE------------------KF 768 (1088)
Q Consensus 712 ss~~ndd~C~VC~dg-----GeLl~CD~C~rafH~~Cl~~~~vP~G~W~C~~C~~~~~Ke------------------k~ 768 (1088)
...+.|..|.||.++ ..+++||.|+.++|++|++.+.+|+|.|.|..|....++. +-
T Consensus 214 ~~~~~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cygi~~ipeg~WlCr~Cl~s~~~~v~c~~cp~~~gAFkqt~dgr 293 (1051)
T KOG0955|consen 214 ALLEEDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYGIPFIPEGQWLCRRCLQSPQRPVRCLLCPSKGGAFKQTDDGR 293 (1051)
T ss_pred cccCCCccceeecccccCCCceEEEcCCCcchhhhhccCCCCCCCCcEeehhhccCcCcccceEeccCCCCcceeccCCc
Confidence 344678899999976 4799999999999999999999999999999997643321 22
Q ss_pred eeccccccccccc--------cccccccccchheeeeccCCCCCCCcceeccCCCCCCCCCCCcceeecC--CCCCcCCC
Q 001383 769 VEYNANARAAGRI--------EGVDPFAQMVSRCIRIVQTPDTELGGCVLCRGRDFCKSRFGRRTVILCD--QCEREYHV 838 (1088)
Q Consensus 769 v~~~~na~aagrv--------eGvdpieqi~~rciRivk~~d~e~~~C~vCk~~d~sksgf~~g~LL~CD--qC~raYHv 838 (1088)
++|..+++|...+ ++++.++.+....+ ...|++|+..+ .|..++|. .|-.+||+
T Consensus 294 w~Hv~caiwipev~F~nt~~~E~I~~i~~i~~aRw---------kL~cy~cK~~~-------~gaciqcs~~~c~~a~hv 357 (1051)
T KOG0955|consen 294 WAHVVCAIWIPEVSFANTVFLEPIDSIENIPPARW---------KLTCYICKQKG-------LGACIQCSKANCYTAFHV 357 (1051)
T ss_pred eeeeehhhcccccccccchhhccccchhcCcHhhh---------hceeeeeccCC-------CCcceecchhhhhhhhhh
Confidence 3455555554322 33444444432222 24699999853 47899998 79999999
Q ss_pred CCCCCCCCCC
Q 001383 839 GCLKDHGMED 848 (1088)
Q Consensus 839 ~CL~p~g~~~ 848 (1088)
+|....|+..
T Consensus 358 tca~~agl~m 367 (1051)
T KOG0955|consen 358 TCARRAGLYM 367 (1051)
T ss_pred hhHhhcCceE
Confidence 9999988643
No 12
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.88 E-value=6e-10 Score=120.68 Aligned_cols=91 Identities=29% Similarity=0.702 Sum_probs=76.0
Q ss_pred ccccccccccC---------CceEecCCCCCccccccCCCC-----CCCCCCcccccccccccccceeeccccccccccc
Q 001383 716 NDDLCGICMDG---------GDLLCCDSCPRAFHIDCVSLP-----GIPSGTWHCRYCMNTFQKEKFVEYNANARAAGRI 781 (1088)
Q Consensus 716 ndd~C~VC~dg---------GeLl~CD~C~rafH~~Cl~~~-----~vP~G~W~C~~C~~~~~Kek~v~~~~na~aagrv 781 (1088)
....|.+|.++ ..+++|..|..++|..|+.++ .+....|.|..|+-
T Consensus 257 ~~~~~~~~~~~~~~~~~~r~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W~C~~C~l-------------------- 316 (381)
T KOG1512|consen 257 RRNERKHFWDIQTNIIQSRRNSWIVCKPCATRPHPYCVAMIPELVGQYKTYFWKCSSCEL-------------------- 316 (381)
T ss_pred chhhhhhhhcchhhhhhhhhccceeecccccCCCCcchhcCHHHHhHHhhcchhhcccHh--------------------
Confidence 34578999865 369999999999999999855 34567899999973
Q ss_pred cccccccccchheeeeccCCCCCCCcceeccCCCCCCCCCCCcceeecCCCCCcCCCCCCCCCCCCCcccCCCCCcccCC
Q 001383 782 EGVDPFAQMVSRCIRIVQTPDTELGGCVLCRGRDFCKSRFGRRTVILCDQCEREYHVGCLKDHGMEDLQELPKGKWLCCA 861 (1088)
Q Consensus 782 eGvdpieqi~~rciRivk~~d~e~~~C~vCk~~d~sksgf~~g~LL~CDqC~raYHv~CL~p~g~~~LkEiP~g~WfCp~ 861 (1088)
|.+|+++. .+..+++||.|+|+||..|+. |..+|.|.|.|..
T Consensus 317 --------------------------C~IC~~P~------~E~E~~FCD~CDRG~HT~CVG------L~~lP~G~WICD~ 358 (381)
T KOG1512|consen 317 --------------------------CRICLGPV------IESEHLFCDVCDRGPHTLCVG------LQDLPRGEWICDM 358 (381)
T ss_pred --------------------------hhccCCcc------cchheeccccccCCCCccccc------cccccCccchhhh
Confidence 99999864 356799999999999999997 8899999999966
Q ss_pred Cch
Q 001383 862 DCK 864 (1088)
Q Consensus 862 ~C~ 864 (1088)
.|.
T Consensus 359 ~C~ 361 (381)
T KOG1512|consen 359 RCR 361 (381)
T ss_pred HHH
Confidence 564
No 13
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=98.86 E-value=1.4e-08 Score=94.98 Aligned_cols=74 Identities=15% Similarity=0.209 Sum_probs=65.4
Q ss_pred eEEEEEEeCCEEEEEEEEEEecCceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccCc
Q 001383 967 MYCAILTVNQVVVSAGIFRIFGQELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSASEAQAIWTNKFGF 1046 (1088)
Q Consensus 967 fY~~VL~~~~evVsaA~lri~g~~~AEip~VAT~~~~RgqG~gr~L~~aIE~~L~~lgV~~LvLpA~~eA~~~w~~kfGF 1046 (1088)
...+|++.++++||.+.++ .-++|..+.|+|+|||+|+|++||..+++.++. |++.|.+.+...|.+||.+ +||
T Consensus 44 ~~~~v~~~~~~ivG~~~~~----~~~~i~~l~v~p~~r~~Gig~~Ll~~~~~~~~~-~~~~l~~~~~~~a~~~y~~-~GF 117 (117)
T PF13673_consen 44 HTIFVAEEGGEIVGFAWLE----PDGEISHLYVLPEYRGRGIGRALLDAAEKEAKD-GIRRLTVEANERARRFYRK-LGF 117 (117)
T ss_dssp CEEEEEEETTEEEEEEEEE----TCEEEEEEEE-GGGTTSSHHHHHHHHHHHHHTT-TCEEEEEEC-HHHHHHHHH-TT-
T ss_pred CEEEEEEECCEEEEEEEEc----CCCeEEEEEEChhhcCCcHHHHHHHHHHHHHHc-CCcEEEEEeCHHHHHHHHh-CCC
Confidence 5677889999999999986 345699999999999999999999999999988 9999999999999999999 998
No 14
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=98.73 E-value=3.7e-09 Score=107.99 Aligned_cols=103 Identities=20% Similarity=0.463 Sum_probs=64.9
Q ss_pred ccccccc------CCceEecCCCCCccccccCCCCC--------CCCC--Ccccccccccccccceeeccccccccc---
Q 001383 719 LCGICMD------GGDLLCCDSCPRAFHIDCVSLPG--------IPSG--TWHCRYCMNTFQKEKFVEYNANARAAG--- 779 (1088)
Q Consensus 719 ~C~VC~d------gGeLl~CD~C~rafH~~Cl~~~~--------vP~G--~W~C~~C~~~~~Kek~v~~~~na~aag--- 779 (1088)
.|.+|+. .|.|++|++|..+||+.||++.+ +.++ -.+|.+|....++++..+........-
T Consensus 1 ~C~~C~~~g~~~~kG~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Cig~~~kKD~~aP~~~~C~~C~~~ 80 (175)
T PF15446_consen 1 TCDTCGYEGDDRNKGPLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCIGIAHKKDPRAPHHGMCQQCKKP 80 (175)
T ss_pred CcccccCCCCCccCCCeEEcCccChHHHhhhcCCccccceeeEEEcCCceEEechhhcChhhcccCCCCCCCcccccCCC
Confidence 4778852 47899999999999999999663 2233 378999987665554333222111110
Q ss_pred ---------------------cccccccccccchheeeeccCCCCCCCcceeccCCCCCCCCCCCcceeecCCCCCcCCC
Q 001383 780 ---------------------RIEGVDPFAQMVSRCIRIVQTPDTELGGCVLCRGRDFCKSRFGRRTVILCDQCEREYHV 838 (1088)
Q Consensus 780 ---------------------rveGvdpieqi~~rciRivk~~d~e~~~C~vCk~~d~sksgf~~g~LL~CDqC~raYHv 838 (1088)
...|+|||..+... .....++.|++|..|.|+||+
T Consensus 81 G~~c~pfr~r~T~kQEe~~ReeNgG~DPit~Vd~~------------------------lvnN~~nVLFRC~~C~RawH~ 136 (175)
T PF15446_consen 81 GPSCKPFRPRKTPKQEEKLREENGGVDPITPVDPE------------------------LVNNPDNVLFRCTSCHRAWHF 136 (175)
T ss_pred CCCCcccCCCCCcHHHHHHHHHcCCCCCCccCCHH------------------------HccChhheEEecCCccceeeh
Confidence 01233333322211 112235679999999999999
Q ss_pred CCCCCCC
Q 001383 839 GCLKDHG 845 (1088)
Q Consensus 839 ~CL~p~g 845 (1088)
.+|++.+
T Consensus 137 ~HLP~~~ 143 (175)
T PF15446_consen 137 EHLPPPS 143 (175)
T ss_pred hhCCCCc
Confidence 9999864
No 15
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=98.73 E-value=3.6e-09 Score=125.81 Aligned_cols=135 Identities=24% Similarity=0.538 Sum_probs=92.3
Q ss_pred cccccccccccC-----CceEecCCCCCccccccCCCCCCCCCCcccccccccccccc-----------------eeecc
Q 001383 715 ENDDLCGICMDG-----GDLLCCDSCPRAFHIDCVSLPGIPSGTWHCRYCMNTFQKEK-----------------FVEYN 772 (1088)
Q Consensus 715 ~ndd~C~VC~dg-----GeLl~CD~C~rafH~~Cl~~~~vP~G~W~C~~C~~~~~Kek-----------------~v~~~ 772 (1088)
+++-.|.+|..+ .+|++||.|....|+.|+|+..+|+|.|.|..|.-...+.. -++|.
T Consensus 269 dedviCDvCrspD~e~~neMVfCd~Cn~cVHqaCyGIle~p~gpWlCr~Calg~~ppCvLCPkkGGamK~~~sgT~wAHv 348 (893)
T KOG0954|consen 269 DEDVICDVCRSPDSEEANEMVFCDKCNICVHQACYGILEVPEGPWLCRTCALGIEPPCVLCPKKGGAMKPTKSGTKWAHV 348 (893)
T ss_pred cccceeceecCCCccccceeEEeccchhHHHHhhhceeecCCCCeeehhccccCCCCeeeccccCCcccccCCCCeeeEe
Confidence 477789999854 58999999999999999999999999999999975433221 23556
Q ss_pred ccccccccc-----cccccc---cccchheeeeccCCCCCCCcceeccCCCCCCCCCCCcceeecC--CCCCcCCCCCCC
Q 001383 773 ANARAAGRI-----EGVDPF---AQMVSRCIRIVQTPDTELGGCVLCRGRDFCKSRFGRRTVILCD--QCEREYHVGCLK 842 (1088)
Q Consensus 773 ~na~aagrv-----eGvdpi---eqi~~rciRivk~~d~e~~~C~vCk~~d~sksgf~~g~LL~CD--qC~raYHv~CL~ 842 (1088)
.+++|.-.+ +-+.|| ..|....|. ..|.+|+.. .+..|+|. .|..+||+.|..
T Consensus 349 sCALwIPEVsie~~ekmePItkfs~IpesRws---------lvC~LCk~k--------~GACIqCs~k~C~t~fHv~CA~ 411 (893)
T KOG0954|consen 349 SCALWIPEVSIECPEKMEPITKFSHIPESRWS---------LVCNLCKVK--------SGACIQCSNKTCRTAFHVTCAF 411 (893)
T ss_pred eeeeccceeeccCHhhcCcccccCCCcHHHHH---------HHHHHhccc--------CcceEEecccchhhhccchhhh
Confidence 666664322 223333 333322333 349999874 46789998 899999999999
Q ss_pred CCCCCC---cccCC--CCCcccCCCchhhH
Q 001383 843 DHGMED---LQELP--KGKWLCCADCKRIN 867 (1088)
Q Consensus 843 p~g~~~---LkEiP--~g~WfCp~~C~~I~ 867 (1088)
.+|+.. +.+.. ...-||+ .|..+.
T Consensus 412 ~aG~~~~~~~~~~D~v~~~s~c~-khs~~~ 440 (893)
T KOG0954|consen 412 EAGLEMKTILKENDEVKFKSYCS-KHSDHR 440 (893)
T ss_pred hcCCeeeeeeccCCchhheeecc-cccccc
Confidence 998642 11111 2345885 455444
No 16
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.71 E-value=3.6e-09 Score=114.71 Aligned_cols=99 Identities=25% Similarity=0.540 Sum_probs=79.7
Q ss_pred eEeEEecCeeeeecceEecCceeeccCCCccChhhhhhccCcccccccccceeccCCccchhhhhhhccCCCCCCccccc
Q 001383 639 EVGYFVRGEVKFLVGYKKGFGILCTCCNSEVSPSQFEAHAGWASRRKPFQHIYTSNGVSLHELSIKLSLERPFSSKENDD 718 (1088)
Q Consensus 639 ~V~Yy~~Gq~klL~G~k~~~GI~C~CCn~~~SPSeFE~HAG~~srrkpy~sI~l~nG~SL~dl~~~l~k~~k~ss~~ndd 718 (1088)
+.+.+-+|| .-...-+..+-|+|+-|....||++.++...+.+.-+.|.|.+. ...
T Consensus 260 ~~~~~~~~~-~~~~~~r~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W~C~-----------------------~C~ 315 (381)
T KOG1512|consen 260 ERKHFWDIQ-TNIIQSRRNSWIVCKPCATRPHPYCVAMIPELVGQYKTYFWKCS-----------------------SCE 315 (381)
T ss_pred hhhhhhcch-hhhhhhhhccceeecccccCCCCcchhcCHHHHhHHhhcchhhc-----------------------ccH
Confidence 333444555 22223345668999999999999999999988888888888865 456
Q ss_pred cccccccC---CceEecCCCCCccccccCCCCCCCCCCcccc-cccc
Q 001383 719 LCGICMDG---GDLLCCDSCPRAFHIDCVSLPGIPSGTWHCR-YCMN 761 (1088)
Q Consensus 719 ~C~VC~dg---GeLl~CD~C~rafH~~Cl~~~~vP~G~W~C~-~C~~ 761 (1088)
.|.+|+.+ .+++|||.|+|+||.+|+++..+|.|.|.|. .|..
T Consensus 316 lC~IC~~P~~E~E~~FCD~CDRG~HT~CVGL~~lP~G~WICD~~C~~ 362 (381)
T KOG1512|consen 316 LCRICLGPVIESEHLFCDVCDRGPHTLCVGLQDLPRGEWICDMRCRE 362 (381)
T ss_pred hhhccCCcccchheeccccccCCCCccccccccccCccchhhhHHHH
Confidence 89999975 5899999999999999999999999999997 5653
No 17
>PTZ00330 acetyltransferase; Provisional
Probab=98.71 E-value=8.1e-08 Score=93.56 Aligned_cols=83 Identities=13% Similarity=0.191 Sum_probs=72.3
Q ss_pred EEEEEEeCCEEEEEEEEEEec------CceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHH
Q 001383 968 YCAILTVNQVVVSAGIFRIFG------QELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSASEAQAIWT 1041 (1088)
Q Consensus 968 Y~~VL~~~~evVsaA~lri~g------~~~AEip~VAT~~~~RgqG~gr~L~~aIE~~L~~lgV~~LvLpA~~eA~~~w~ 1041 (1088)
+.++...+|++||.+.+.+.. ...++|-.+.|.++|||+|+|+.||..+++.++..|+..++|.+...|..||+
T Consensus 53 ~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~i~~~~V~~~~rg~Gig~~l~~~~~~~a~~~~~~~l~l~~n~~a~~~y~ 132 (147)
T PTZ00330 53 RVFVHSPTQRIVGTASLFVEPKFTRGGKCVGHIEDVVVDPSYRGQGLGRALISDLCEIARSSGCYKVILDCTEDMVAFYK 132 (147)
T ss_pred EEEEEeCCCEEEEEEEEEeccccccCCCceEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEecChHHHHHHH
Confidence 345556789999999986532 23678889999999999999999999999999999999999999999999999
Q ss_pred hccCcEEcCH
Q 001383 1042 NKFGFSMMTE 1051 (1088)
Q Consensus 1042 ~kfGF~~i~~ 1051 (1088)
+ +||.....
T Consensus 133 k-~GF~~~~~ 141 (147)
T PTZ00330 133 K-LGFRACER 141 (147)
T ss_pred H-CCCEEece
Confidence 9 99998763
No 18
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=98.67 E-value=7.5e-08 Score=93.48 Aligned_cols=80 Identities=11% Similarity=0.085 Sum_probs=69.1
Q ss_pred EEEEeCCEEEEEEEEEEec-----CceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecCh---hhhHHHHH
Q 001383 970 AILTVNQVVVSAGIFRIFG-----QELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSA---SEAQAIWT 1041 (1088)
Q Consensus 970 ~VL~~~~evVsaA~lri~g-----~~~AEip~VAT~~~~RgqG~gr~L~~aIE~~L~~lgV~~LvLpA~---~eA~~~w~ 1041 (1088)
+|++.++++||++.++... ...++|..++|+++|||||+|+.||..+++.++..|...+.|.+. ..|..||.
T Consensus 50 ~v~~~~~~ivG~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~GiG~~Ll~~~~~~a~~~~~~~i~l~~~~~n~~a~~fY~ 129 (144)
T PRK10146 50 HLALLDGEVVGMIGLHLQFHLHHVNWIGEIQELVVMPQARGLNVGSKLLAWAEEEARQAGAEMTELSTNVKRHDAHRFYL 129 (144)
T ss_pred EEEEECCEEEEEEEEEecccccccchhheeheeEECHHHcCCCHHHHHHHHHHHHHHHcCCcEEEEecCCCchHHHHHHH
Confidence 4567899999999987642 235789999999999999999999999999999999999998765 48999999
Q ss_pred hccCcEEcC
Q 001383 1042 NKFGFSMMT 1050 (1088)
Q Consensus 1042 ~kfGF~~i~ 1050 (1088)
+ +||....
T Consensus 130 ~-~Gf~~~~ 137 (144)
T PRK10146 130 R-EGYEQSH 137 (144)
T ss_pred H-cCCchhh
Confidence 9 9997653
No 19
>PLN02706 glucosamine 6-phosphate N-acetyltransferase
Probab=98.65 E-value=1.4e-07 Score=92.89 Aligned_cols=82 Identities=10% Similarity=0.212 Sum_probs=69.3
Q ss_pred EEEEEEe--CCEEEEEEEEEEec------CceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecChhhhHHH
Q 001383 968 YCAILTV--NQVVVSAGIFRIFG------QELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSASEAQAI 1039 (1088)
Q Consensus 968 Y~~VL~~--~~evVsaA~lri~g------~~~AEip~VAT~~~~RgqG~gr~L~~aIE~~L~~lgV~~LvLpA~~eA~~~ 1039 (1088)
|.+++.. ++++||.+.+++.. ..++.|..++|.++|||||+|+.||..+++.++.+|+++|+|...+....|
T Consensus 54 ~~~~~~~~~~~~ivG~~~~~~~~~~~~~~~~~~~i~~i~V~~~~rg~GiG~~ll~~~~~~a~~~g~~~i~l~~~~~N~~~ 133 (150)
T PLN02706 54 LICVIEDAASGRIIATGSVFVERKFIRNCGKVGHIEDVVVDSAARGKGLGKKIIEALTEHARSAGCYKVILDCSEENKAF 133 (150)
T ss_pred EEEEEEeCCCCcEEEEEEEEEEeecccCCCcEEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEeccccHHH
Confidence 3444454 68999999986432 246778889999999999999999999999999999999999988888999
Q ss_pred HHhccCcEEcC
Q 001383 1040 WTNKFGFSMMT 1050 (1088)
Q Consensus 1040 w~~kfGF~~i~ 1050 (1088)
|.+ +||+..+
T Consensus 134 y~k-~GF~~~g 143 (150)
T PLN02706 134 YEK-CGYVRKE 143 (150)
T ss_pred HHH-CcCEEeh
Confidence 998 9999754
No 20
>PLN02825 amino-acid N-acetyltransferase
Probab=98.64 E-value=1.1e-07 Score=113.39 Aligned_cols=103 Identities=22% Similarity=0.328 Sum_probs=84.1
Q ss_pred EEEEeCCEEEEEEEEEEec-CceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccCcEE
Q 001383 970 AILTVNQVVVSAGIFRIFG-QELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSASEAQAIWTNKFGFSM 1048 (1088)
Q Consensus 970 ~VL~~~~evVsaA~lri~g-~~~AEip~VAT~~~~RgqG~gr~L~~aIE~~L~~lgV~~LvLpA~~eA~~~w~~kfGF~~ 1048 (1088)
+|++.++++||+|.+..+. .+.+||-.|||+++|||+|+|++||..+|+.++++|+++|++.+ ..+..||.+ +||..
T Consensus 410 ~V~e~Dg~IVG~aal~~~~~~~~aEI~~laV~P~yRGkGiG~~LL~~le~~Ar~~G~~~L~Llt-t~a~~fY~k-~GF~~ 487 (515)
T PLN02825 410 VVVEREGSIIACAALFPFFEEKCGEVAAIAVSPECRGQGQGDKLLDYIEKKAASLGLEKLFLLT-TRTADWFVR-RGFSE 487 (515)
T ss_pred EEEEECCEEEEEEEEEeecCCCcEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEe-CcHHHHHHH-CCCEE
Confidence 3568999999999987765 46899999999999999999999999999999999999999976 467777777 99999
Q ss_pred cCHHHHHhhhcc-cCeeeeCCceeeeccC
Q 001383 1049 MTEEEQNKYRND-YPLMIFQGTSMLQKPV 1076 (1088)
Q Consensus 1049 i~~~el~~~~~~-~~ll~F~GT~mLqK~l 1076 (1088)
.+.+++..-|+. ++.- -++-.+.|.|
T Consensus 488 ~~~~~lp~~~~~~yn~~--r~sk~~~k~l 514 (515)
T PLN02825 488 CSIESLPEARRKRINLS--RGSKYYMKKL 514 (515)
T ss_pred eChhhCCHHHHhhcCcc--CCcEEEEEec
Confidence 999887766554 4421 3444555544
No 21
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=98.62 E-value=1e-07 Score=106.85 Aligned_cols=74 Identities=16% Similarity=0.184 Sum_probs=67.6
Q ss_pred EEEeCCEEEEEEEEEEecCceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccCcEEcC
Q 001383 971 ILTVNQVVVSAGIFRIFGQELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSASEAQAIWTNKFGFSMMT 1050 (1088)
Q Consensus 971 VL~~~~evVsaA~lri~g~~~AEip~VAT~~~~RgqG~gr~L~~aIE~~L~~lgV~~LvLpA~~eA~~~w~~kfGF~~i~ 1050 (1088)
+...++++||++++.. .+|..|||+++|||||+|+.||..+++.++..|+.+++|.+..++.+||.+ +||..++
T Consensus 10 v~~~~~~iVG~~~l~~-----~~I~~vaV~p~~Rg~GiG~~Ll~~l~~~a~~~g~~~i~L~t~~~~~~fYek-~GF~~~~ 83 (297)
T cd02169 10 IFDDAGELIATGSIAG-----NVLKCVAVCPKYQGEGLALKIVSELINKAYEEGIFHLFLFTKPKNAKFFRG-LGFKELA 83 (297)
T ss_pred EEEECCEEEEEEEecc-----CEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEcccHHHHHHH-CCCEEec
Confidence 3456799999998842 368999999999999999999999999999999999999999999999997 9999988
No 22
>PF13527 Acetyltransf_9: Acetyltransferase (GNAT) domain; PDB: 3SXN_C 2I00_D 1M4D_B 1M44_A 1M4G_B 1M4I_A 2OZG_A 2HV2_F 3N7Z_A 3RYO_B ....
Probab=98.61 E-value=2.6e-07 Score=88.24 Aligned_cols=111 Identities=17% Similarity=0.232 Sum_probs=79.5
Q ss_pred HHHHHHhhhhccCcccccCcCCCccccccccccCCCcceeceEEEEEEeCCEEEEEEEEEEe-----cC--ceEEEeeee
Q 001383 926 LSKAVSIFHDRFDPIIESASKLDLIPAMVYGRSHRGQDYHGMYCAILTVNQVVVSAGIFRIF-----GQ--ELAELPLVA 998 (1088)
Q Consensus 926 LavAl~If~EcFdPIiD~~Sg~DLIp~MVYg~~~~rl~f~GfY~~VL~~~~evVsaA~lri~-----g~--~~AEip~VA 998 (1088)
+....+++.++|.+-.... ..+.|..+. +..-++++.+.+++|||.+.+... |. .++-|--||
T Consensus 10 ~~~i~~l~~~~F~~~~~~~------~~~~~~~~~----~~~~~~~~~~~~~~ivg~~~~~~~~~~~~g~~~~~~~i~~v~ 79 (127)
T PF13527_consen 10 FEQIIELFNEAFGDSESPP------EIWEYFRNL----YGPGRCVVAEDDGKIVGHVGLIPRRLSVGGKKFKAAYIGDVA 79 (127)
T ss_dssp HHHHHHHHHHHTTT-CHHH------HHHHHHHHH----HHTTEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHCCCCCCch------hhhhhhhcc----cCcCcEEEEEECCEEEEEEEEEEEEEEECCEEEEEEEEEEEE
Confidence 3455677888885433221 122222211 111256777889999999988655 43 589999999
Q ss_pred eccCcccCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccCcEEc
Q 001383 999 TSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSASEAQAIWTNKFGFSMM 1049 (1088)
Q Consensus 999 T~~~~RgqG~gr~L~~aIE~~L~~lgV~~LvLpA~~eA~~~w~~kfGF~~i 1049 (1088)
|.++|||||+++.||.++++.++..|+..++|-+ ...+||.+ |||+.+
T Consensus 80 v~p~~R~~Gl~~~L~~~~~~~~~~~g~~~~~l~~--~~~~~Y~~-~G~~~~ 127 (127)
T PF13527_consen 80 VDPEYRGRGLGRQLMRALLERARERGVPFIFLFP--SSPPFYRR-FGFEYA 127 (127)
T ss_dssp E-GGGTTSSHHHHHHHHHHHHHHHTT-SEEEEE---SSHHHHHH-TTEEEE
T ss_pred ECHHHcCCCHHHHHHHHHHHHHHhCCCCEEEEec--CChhhhhc-CCCEEC
Confidence 9999999999999999999999999999999877 34789988 999864
No 23
>PRK07757 acetyltransferase; Provisional
Probab=98.61 E-value=1.6e-07 Score=92.81 Aligned_cols=82 Identities=22% Similarity=0.266 Sum_probs=72.2
Q ss_pred EEEeCCEEEEEEEEEEecCceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccCcEEcC
Q 001383 971 ILTVNQVVVSAGIFRIFGQELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSASEAQAIWTNKFGFSMMT 1050 (1088)
Q Consensus 971 VL~~~~evVsaA~lri~g~~~AEip~VAT~~~~RgqG~gr~L~~aIE~~L~~lgV~~LvLpA~~eA~~~w~~kfGF~~i~ 1050 (1088)
++..++++||.+.+.+.+.+.++|-.|+|.++|||+|+|+.||..+++.+...|+.++++-.. +..||.+ +||+.++
T Consensus 45 i~~~~~~lvG~~~l~~~~~~~~~i~~v~V~p~~rg~Glg~~Ll~~l~~~a~~~g~~~i~~~~~--~~~~Y~k-~GF~~~~ 121 (152)
T PRK07757 45 VAEEEGEIVGCCALHILWEDLAEIRSLAVSEDYRGQGIGRMLVEACLEEARELGVKRVFALTY--QPEFFEK-LGFREVD 121 (152)
T ss_pred EEEECCEEEEEEEEEeccCCceEEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCCCeEEEEeC--cHHHHHH-CCCEEcc
Confidence 446789999999999988889999999999999999999999999999999999999876443 4689988 9999998
Q ss_pred HHHHH
Q 001383 1051 EEEQN 1055 (1088)
Q Consensus 1051 ~~el~ 1055 (1088)
..++.
T Consensus 122 ~~~~~ 126 (152)
T PRK07757 122 KEALP 126 (152)
T ss_pred cccCC
Confidence 85543
No 24
>PRK07922 N-acetylglutamate synthase; Validated
Probab=98.61 E-value=1.6e-07 Score=96.32 Aligned_cols=79 Identities=16% Similarity=0.279 Sum_probs=70.9
Q ss_pred EEEE-eCCEEEEEEEEEEecCceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccCcEE
Q 001383 970 AILT-VNQVVVSAGIFRIFGQELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSASEAQAIWTNKFGFSM 1048 (1088)
Q Consensus 970 ~VL~-~~~evVsaA~lri~g~~~AEip~VAT~~~~RgqG~gr~L~~aIE~~L~~lgV~~LvLpA~~eA~~~w~~kfGF~~ 1048 (1088)
++++ .++++||.+.+.+...+.++|..++|+++|||+|+|+.||.++++.++..|++++++... +..||.+ +||+.
T Consensus 48 ~va~~~~~~iiG~~~~~~~~~~~~~i~~l~V~p~~rgkGiG~~Ll~~~~~~a~~~g~~~l~~~~~--~~~fY~k-~GF~~ 124 (169)
T PRK07922 48 WVAEHLDGEVVGCGALHVMWEDLAEIRTVAVDPAARGRGVGHAIVERLLDVARELGLSRVFVLTF--EVEFFAR-HGFVE 124 (169)
T ss_pred EEEEecCCcEEEEEEEeecCCCceEEEEEEECHHHhCCCHHHHHHHHHHHHHHHcCCCEEEEEec--cHHHHHH-CCCEE
Confidence 4556 889999999998878889999999999999999999999999999999999999987654 4789999 99999
Q ss_pred cCH
Q 001383 1049 MTE 1051 (1088)
Q Consensus 1049 i~~ 1051 (1088)
++.
T Consensus 125 ~~~ 127 (169)
T PRK07922 125 IDG 127 (169)
T ss_pred Ccc
Confidence 865
No 25
>PRK03624 putative acetyltransferase; Provisional
Probab=98.58 E-value=1.8e-07 Score=89.00 Aligned_cols=82 Identities=17% Similarity=0.148 Sum_probs=68.7
Q ss_pred EEEEEEeCCEEEEEEEEEEecCceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecCh---hhhHHHHHhcc
Q 001383 968 YCAILTVNQVVVSAGIFRIFGQELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSA---SEAQAIWTNKF 1044 (1088)
Q Consensus 968 Y~~VL~~~~evVsaA~lri~g~~~AEip~VAT~~~~RgqG~gr~L~~aIE~~L~~lgV~~LvLpA~---~eA~~~w~~kf 1044 (1088)
+.+++..++++||.+.+...+ ..+.+..++|+++|||||||+.|+..+++.++.+|++++.+.+. ..+..+|.+ +
T Consensus 46 ~~~v~~~~~~~vG~~~~~~~~-~~~~i~~i~v~p~~rg~Gig~~ll~~~~~~~~~~~~~~~~~~~~~~N~~~~~~y~k-~ 123 (140)
T PRK03624 46 LFLVAEVGGEVVGTVMGGYDG-HRGWAYYLAVHPDFRGRGIGRALVARLEKKLIARGCPKINLQVREDNDAVLGFYEA-L 123 (140)
T ss_pred eEEEEEcCCcEEEEEEeeccC-CCceEEEEEECHHHhCCCHHHHHHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHH-c
Confidence 445667889999999876543 45778899999999999999999999999999999999887654 458899987 9
Q ss_pred CcEEcCH
Q 001383 1045 GFSMMTE 1051 (1088)
Q Consensus 1045 GF~~i~~ 1051 (1088)
||+..+.
T Consensus 124 GF~~~~~ 130 (140)
T PRK03624 124 GYEEQDR 130 (140)
T ss_pred CCccccE
Confidence 9997654
No 26
>COG2153 ElaA Predicted acyltransferase [General function prediction only]
Probab=98.54 E-value=1.9e-07 Score=94.07 Aligned_cols=84 Identities=25% Similarity=0.192 Sum_probs=72.4
Q ss_pred EEEEeCCEEEEEEEEEEecCceEE--EeeeeeccCcccCChhHHHHHHHHHHhhhcC-ccEEEecChhhhHHHHHhccCc
Q 001383 970 AILTVNQVVVSAGIFRIFGQELAE--LPLVATSNDCQGQGYFQSLFCCIEKLLGFLN-VKTLVLPSASEAQAIWTNKFGF 1046 (1088)
Q Consensus 970 ~VL~~~~evVsaA~lri~g~~~AE--ip~VAT~~~~RgqG~gr~L~~aIE~~L~~lg-V~~LvLpA~~eA~~~w~~kfGF 1046 (1088)
++...+|++|++|+|-.-+....+ |.+|+|.+++||+|+|+.||....+.+.... =+.+.|.||..+++||.. |||
T Consensus 53 ~~~~~~g~LvAyaRLl~~~~~~~~~~iGRV~v~~~~RG~glG~~Lm~~AL~~~~~~~p~~~v~l~AQahLq~fYa~-~GF 131 (155)
T COG2153 53 LGWTPDGELVAYARLLPPGAEYEEVSIGRVIVSPAARGQGLGQQLMEKALETAGREWPDKPVYLGAQAHLQDFYAS-FGF 131 (155)
T ss_pred EEEcCCCeEEEEEecCCCCCCcCceeeeeEEECHhhhccchhHHHHHHHHHHHHhhCCCCCeEEehHHHHHHHHHH-hCc
Confidence 344459999999999888776666 9999999999999999999998877776665 567999999999999999 999
Q ss_pred EEcCHHHH
Q 001383 1047 SMMTEEEQ 1054 (1088)
Q Consensus 1047 ~~i~~~el 1054 (1088)
.+.+++-+
T Consensus 132 v~~~e~yl 139 (155)
T COG2153 132 VRVGEEYL 139 (155)
T ss_pred EEcCchhh
Confidence 99998643
No 27
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=98.53 E-value=3.3e-07 Score=107.01 Aligned_cols=86 Identities=16% Similarity=0.270 Sum_probs=74.4
Q ss_pred EEEeCCEEEEEEEEEEec-CceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccCcEEc
Q 001383 971 ILTVNQVVVSAGIFRIFG-QELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSASEAQAIWTNKFGFSMM 1049 (1088)
Q Consensus 971 VL~~~~evVsaA~lri~g-~~~AEip~VAT~~~~RgqG~gr~L~~aIE~~L~~lgV~~LvLpA~~eA~~~w~~kfGF~~i 1049 (1088)
|++.++++||++.+..+. ...++|-.|+|+++|||||+|++||..+++.+++.|+++|++.+. .+..||.+ +||+.+
T Consensus 326 V~~~dg~iVG~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~A~~~G~~~l~v~~~-~a~~fY~k-~GF~~~ 403 (429)
T TIGR01890 326 IIEHDGNIIGCAALYPYAEEDCGEMACLAVSPEYQDGGRGERLLAHIEDRARQMGISRLFVLTT-RTGHWFRE-RGFQTA 403 (429)
T ss_pred EEEECCEEEEEEEEEecCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEeec-chHHHHHH-CCCEEC
Confidence 457899999999998874 468999999999999999999999999999999999999887654 56789987 999999
Q ss_pred CHHHHHhhh
Q 001383 1050 TEEEQNKYR 1058 (1088)
Q Consensus 1050 ~~~el~~~~ 1058 (1088)
+..++..-+
T Consensus 404 g~~~l~~~~ 412 (429)
T TIGR01890 404 SVDELPEAR 412 (429)
T ss_pred ChhhCCHHH
Confidence 886554433
No 28
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=98.47 E-value=4.8e-07 Score=102.85 Aligned_cols=82 Identities=20% Similarity=0.243 Sum_probs=73.3
Q ss_pred ceEEEEEEeCCEEEEEEEEEEecCceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccC
Q 001383 966 GMYCAILTVNQVVVSAGIFRIFGQELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSASEAQAIWTNKFG 1045 (1088)
Q Consensus 966 GfY~~VL~~~~evVsaA~lri~g~~~AEip~VAT~~~~RgqG~gr~L~~aIE~~L~~lgV~~LvLpA~~eA~~~w~~kfG 1045 (1088)
-.|+++++.++++||+|++ .+. .|..|||+++|||+|+|+.||..+++.+.+.|+..++|.+.+.+..||.+ +|
T Consensus 30 ~d~~vv~~~~~~lVg~g~l--~g~---~ik~vaV~~~~rG~Glg~~L~~~L~~~a~~~G~~~l~l~Tk~~~~~fy~k-lG 103 (332)
T TIGR00124 30 LEIFIAVYEDEEIIGCGGI--AGN---VIKCVAIDESLRGEGLALQLMTELENLAYELGRFHLFIFTKPEYAALFEY-CG 103 (332)
T ss_pred CCEEEEEEECCEEEEEEEE--ecC---EEEEEEEcHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEECchHHHHHHH-cC
Confidence 3577788899999999997 342 48899999999999999999999999999999999999999999999887 99
Q ss_pred cEEcCHHH
Q 001383 1046 FSMMTEEE 1053 (1088)
Q Consensus 1046 F~~i~~~e 1053 (1088)
|..+....
T Consensus 104 F~~i~~~~ 111 (332)
T TIGR00124 104 FKTLAEAK 111 (332)
T ss_pred CEEeeeec
Confidence 99998643
No 29
>TIGR01575 rimI ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database.
Probab=98.47 E-value=8e-07 Score=83.82 Aligned_cols=80 Identities=23% Similarity=0.229 Sum_probs=68.6
Q ss_pred EEEEeCCEEEEEEEEEEecCceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEe---cChhhhHHHHHhccCc
Q 001383 970 AILTVNQVVVSAGIFRIFGQELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVL---PSASEAQAIWTNKFGF 1046 (1088)
Q Consensus 970 ~VL~~~~evVsaA~lri~g~~~AEip~VAT~~~~RgqG~gr~L~~aIE~~L~~lgV~~LvL---pA~~eA~~~w~~kfGF 1046 (1088)
+++..++++||.+.+.... ....+-.++|.++|||||+|+.|+.++++.+...|+.++++ +....+..||++ +||
T Consensus 34 ~~~~~~~~~vg~~~~~~~~-~~~~i~~~~v~~~~rg~G~g~~ll~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~~-~Gf 111 (131)
T TIGR01575 34 LLARIGGKVVGYAGVQIVL-DEAHILNIAVKPEYQGQGIGRALLRELIDEAKGRGVNEIFLEVRVSNIAAQALYKK-LGF 111 (131)
T ss_pred EEEecCCeEEEEEEEEecC-CCeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCeEEEEEecccHHHHHHHHH-cCC
Confidence 4456789999999987644 45788899999999999999999999999999999999998 455668899998 999
Q ss_pred EEcCH
Q 001383 1047 SMMTE 1051 (1088)
Q Consensus 1047 ~~i~~ 1051 (1088)
+.++.
T Consensus 112 ~~~~~ 116 (131)
T TIGR01575 112 NEIAI 116 (131)
T ss_pred Ccccc
Confidence 98865
No 30
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=98.43 E-value=8.9e-07 Score=91.89 Aligned_cols=83 Identities=13% Similarity=0.098 Sum_probs=70.6
Q ss_pred eEEEEEEeCCEEEEEEEEEEecCceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecCh---hhhHHHHHhc
Q 001383 967 MYCAILTVNQVVVSAGIFRIFGQELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSA---SEAQAIWTNK 1043 (1088)
Q Consensus 967 fY~~VL~~~~evVsaA~lri~g~~~AEip~VAT~~~~RgqG~gr~L~~aIE~~L~~lgV~~LvLpA~---~eA~~~w~~k 1043 (1088)
++.++...++++||.+.+...+...++|-.++|.++|||||+|+.|+..+++.+...|+.++++... ..+..||.+
T Consensus 102 ~~~v~~~~~g~~vG~~~l~~~~~~~~~i~~~~V~p~~rg~Gig~~Ll~~~~~~a~~~g~~~i~l~v~~~N~~a~~~yek- 180 (194)
T PRK10975 102 QCLLLRDASGQIQGFVTLRELNDTDARIGLLAVFPGAQGRGIGARLMQAALNWCQARGLTRLRVATQMGNLAALRLYIR- 180 (194)
T ss_pred cEEEEEcCCCCEEEEEEEEecCCCceEEEEEEEChhhcCCCHHHHHHHHHHHHHHHcCCCEEEEEeCCCcHHHHHHHHH-
Confidence 3433445678999999998776677999999999999999999999999999999999999987644 568899987
Q ss_pred cCcEEcC
Q 001383 1044 FGFSMMT 1050 (1088)
Q Consensus 1044 fGF~~i~ 1050 (1088)
+||+..+
T Consensus 181 ~Gf~~~~ 187 (194)
T PRK10975 181 SGANIES 187 (194)
T ss_pred CCCeEeE
Confidence 9999764
No 31
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase. This model represents the WecD protein (Formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetytransferases (pfam00583).
Probab=98.43 E-value=9.6e-07 Score=91.70 Aligned_cols=80 Identities=13% Similarity=0.065 Sum_probs=70.0
Q ss_pred EEEeCCEEEEEEEEEEecCceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecC---hhhhHHHHHhccCcE
Q 001383 971 ILTVNQVVVSAGIFRIFGQELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPS---ASEAQAIWTNKFGFS 1047 (1088)
Q Consensus 971 VL~~~~evVsaA~lri~g~~~AEip~VAT~~~~RgqG~gr~L~~aIE~~L~~lgV~~LvLpA---~~eA~~~w~~kfGF~ 1047 (1088)
++..++++||.+.+.......++|-.+++.++|||||+|+.|+.++++.+..+|+.+|.+.. -..|..||.+ +||+
T Consensus 103 ~~~~~g~iiG~i~l~~~~~~~~~i~~l~V~p~~rGkG~G~~ll~~~~~~a~~~g~~~I~l~v~~~N~~A~~~Y~k-lGF~ 181 (191)
T TIGR02382 103 LRDASGDPRGYVTLRELNDTDARIGLLAVFPGAQSRGIGAELMQTALNWCYARGLTRLRVATQMGNTAALRLYIR-SGAN 181 (191)
T ss_pred EEccCCeEEEEEEEEecCCCceEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHH-cCCc
Confidence 44568999999999877666789999999999999999999999999999999999999874 3468999998 9998
Q ss_pred EcCH
Q 001383 1048 MMTE 1051 (1088)
Q Consensus 1048 ~i~~ 1051 (1088)
....
T Consensus 182 ~~~~ 185 (191)
T TIGR02382 182 IEST 185 (191)
T ss_pred cccc
Confidence 6653
No 32
>PRK05279 N-acetylglutamate synthase; Validated
Probab=98.42 E-value=8.2e-07 Score=104.02 Aligned_cols=85 Identities=16% Similarity=0.301 Sum_probs=73.5
Q ss_pred EEEEeCCEEEEEEEEEEec-CceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccCcEE
Q 001383 970 AILTVNQVVVSAGIFRIFG-QELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSASEAQAIWTNKFGFSM 1048 (1088)
Q Consensus 970 ~VL~~~~evVsaA~lri~g-~~~AEip~VAT~~~~RgqG~gr~L~~aIE~~L~~lgV~~LvLpA~~eA~~~w~~kfGF~~ 1048 (1088)
++++.++++||++.+..+. ...++|-.|+|+++|||||+|++||.++++.++..|+.++++.+ ..|..||.+ +||+.
T Consensus 337 ~va~~dg~iVG~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~a~~~g~~~l~l~~-~~a~~fY~k-~GF~~ 414 (441)
T PRK05279 337 TVIERDGLIIGCAALYPFPEEKMGEMACLAVHPDYRGSGRGERLLKRIEQRARQLGLKRLFVLT-TRTAHWFLE-RGFVP 414 (441)
T ss_pred EEEEECCEEEEEEEEEEcCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEec-chHHHHHHH-CcCEE
Confidence 4557899999999887654 36899999999999999999999999999999999999998765 468899988 99999
Q ss_pred cCHHHHHh
Q 001383 1049 MTEEEQNK 1056 (1088)
Q Consensus 1049 i~~~el~~ 1056 (1088)
++..++..
T Consensus 415 ~g~~~~~~ 422 (441)
T PRK05279 415 VDVDDLPE 422 (441)
T ss_pred CChhhCcH
Confidence 98865444
No 33
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.41 E-value=1.8e-07 Score=110.91 Aligned_cols=49 Identities=37% Similarity=0.994 Sum_probs=40.8
Q ss_pred cceeccCCCCCCCCCCCcceeecCCCCCcCCCCCCCCCCCCCcccCCCCCcccCCCch
Q 001383 807 GCVLCRGRDFCKSRFGRRTVILCDQCEREYHVGCLKDHGMEDLQELPKGKWLCCADCK 864 (1088)
Q Consensus 807 ~C~vCk~~d~sksgf~~g~LL~CDqC~raYHv~CL~p~g~~~LkEiP~g~WfCp~~C~ 864 (1088)
+|..|++.+ .| ..+|+||.|++.||+.||.|+ -....+|.+.|||+ .|.
T Consensus 255 fCsaCn~~~----~F--~~~i~CD~Cp~sFH~~CLePP--l~~eniP~g~W~C~-ec~ 303 (613)
T KOG4299|consen 255 FCSACNGSG----LF--NDIICCDGCPRSFHQTCLEPP--LEPENIPPGSWFCP-ECK 303 (613)
T ss_pred HHHHhCCcc----cc--ccceeecCCchHHHHhhcCCC--CCcccCCCCccccC-CCe
Confidence 899999865 34 568999999999999999974 23678999999996 665
No 34
>PRK09491 rimI ribosomal-protein-alanine N-acetyltransferase; Provisional
Probab=98.38 E-value=2.1e-06 Score=84.39 Aligned_cols=84 Identities=29% Similarity=0.243 Sum_probs=71.1
Q ss_pred ceEEEEEEeCCEEEEEEEEEEecCceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEec---ChhhhHHHHHh
Q 001383 966 GMYCAILTVNQVVVSAGIFRIFGQELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLP---SASEAQAIWTN 1042 (1088)
Q Consensus 966 GfY~~VL~~~~evVsaA~lri~g~~~AEip~VAT~~~~RgqG~gr~L~~aIE~~L~~lgV~~LvLp---A~~eA~~~w~~ 1042 (1088)
+++.+++..++++||.+.++.... .+++-.|+|.++|||||+|+.|+..+++.+...|+..+++. .-..+..+|.+
T Consensus 39 ~~~~~~~~~~~~~vG~~~~~~~~~-~~~~~~i~v~~~~rg~G~g~~ll~~~~~~~~~~~~~~~~~~~~~~N~~a~~~y~k 117 (146)
T PRK09491 39 RYLNLKLTVNGQMAAFAITQVVLD-EATLFNIAVDPDYQRQGLGRALLEHLIDELEKRGVATLWLEVRASNAAAIALYES 117 (146)
T ss_pred CceEEEEEECCeEEEEEEEEeecC-ceEEEEEEECHHHccCCHHHHHHHHHHHHHHHCCCcEEEEEEccCCHHHHHHHHH
Confidence 555556678899999999876654 46678899999999999999999999999999999998874 44568899999
Q ss_pred ccCcEEcCH
Q 001383 1043 KFGFSMMTE 1051 (1088)
Q Consensus 1043 kfGF~~i~~ 1051 (1088)
+||+..+.
T Consensus 118 -~Gf~~~~~ 125 (146)
T PRK09491 118 -LGFNEVTI 125 (146)
T ss_pred -cCCEEeee
Confidence 99997765
No 35
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=98.37 E-value=9.6e-07 Score=107.67 Aligned_cols=83 Identities=17% Similarity=0.189 Sum_probs=73.9
Q ss_pred EEEEeCCEEEEEEEEEEecCceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccCcEEc
Q 001383 970 AILTVNQVVVSAGIFRIFGQELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSASEAQAIWTNKFGFSMM 1049 (1088)
Q Consensus 970 ~VL~~~~evVsaA~lri~g~~~AEip~VAT~~~~RgqG~gr~L~~aIE~~L~~lgV~~LvLpA~~eA~~~w~~kfGF~~i 1049 (1088)
+|++.+|++||.+.+.....+.++|..++|+++|||||+|+.||+.+++.++..|++.|++.+. +..||.+ +||+..
T Consensus 506 ~Va~~~g~IVG~~~l~~~~~~~~~I~~i~V~P~~rGkGIGk~Ll~~l~~~ak~~g~~~i~l~~~--a~~FYek-~GF~~~ 582 (614)
T PRK12308 506 AVAEHHGEVTGCASLYIYDSGLAEIRSLGVEAGWQVQGQGSALVQYLVEKARQMAIKKVFVLTR--VPEFFMK-QGFSPT 582 (614)
T ss_pred EEEEECCEEEEEEEEEEcCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEeeC--cHHHHHH-CCCEEC
Confidence 4568899999999998877778999999999999999999999999999999999999988653 5789998 999999
Q ss_pred CHHHHH
Q 001383 1050 TEEEQN 1055 (1088)
Q Consensus 1050 ~~~el~ 1055 (1088)
+..++.
T Consensus 583 ~~~~~~ 588 (614)
T PRK12308 583 SKSLLP 588 (614)
T ss_pred CcccCC
Confidence 876543
No 36
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=98.35 E-value=1.3e-06 Score=95.68 Aligned_cols=85 Identities=13% Similarity=0.144 Sum_probs=71.1
Q ss_pred ceEEEEEEeCCEEEEEEEEEEe-cCceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecChhh---hHHHHH
Q 001383 966 GMYCAILTVNQVVVSAGIFRIF-GQELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSASE---AQAIWT 1041 (1088)
Q Consensus 966 GfY~~VL~~~~evVsaA~lri~-g~~~AEip~VAT~~~~RgqG~gr~L~~aIE~~L~~lgV~~LvLpA~~e---A~~~w~ 1041 (1088)
+.+.++++.++++||.+++.+. +...++|--++|+|+|||||+|+.||..+++.++..|+.++++.+... +..+|.
T Consensus 157 ~~~~~v~~~~g~iVG~~~~~~~~~~~~~eI~~i~V~P~yRG~GiG~~Ll~~l~~~a~~~g~~~l~~~~~~~n~~a~~ly~ 236 (266)
T TIGR03827 157 NVVYFGVEDGGKIIALASAEMDPENGNAEMTDFATLPEYRGKGLAKILLAAMEKEMKEKGIRTAYTIARASSYGMNITFA 236 (266)
T ss_pred CcEEEEEEECCEEEEEEEEecCCCCCcEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCcEEEeehhhcchhHHHHHH
Confidence 3444566789999999998543 346799999999999999999999999999999999999999987654 356787
Q ss_pred hccCcEEcCH
Q 001383 1042 NKFGFSMMTE 1051 (1088)
Q Consensus 1042 ~kfGF~~i~~ 1051 (1088)
+ +||+..+.
T Consensus 237 k-~GF~~~G~ 245 (266)
T TIGR03827 237 R-LGYAYGGT 245 (266)
T ss_pred H-cCCccccE
Confidence 6 99997665
No 37
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.34 E-value=1.4e-07 Score=112.89 Aligned_cols=138 Identities=22% Similarity=0.414 Sum_probs=80.6
Q ss_pred ccccccccc---CCceEecCCCCCccccccCCCCCCCCCCcccccccccccccceeeccccccc--cccccccccc-ccc
Q 001383 717 DDLCGICMD---GGDLLCCDSCPRAFHIDCVSLPGIPSGTWHCRYCMNTFQKEKFVEYNANARA--AGRIEGVDPF-AQM 790 (1088)
Q Consensus 717 dd~C~VC~d---gGeLl~CD~C~rafH~~Cl~~~~vP~G~W~C~~C~~~~~Kek~v~~~~na~a--agrveGvdpi-eqi 790 (1088)
...|.+|.. .+...-=..|...||..|++ .|..-.--|+.|+..|.+........+..+ ....+.-..+ +..
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~--sWsR~aqTCPiDR~EF~~v~V~eS~~~~~~vR~lP~EEs~~~~e~~ 200 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKHTAHYFCEECVG--SWSRCAQTCPVDRGEFGEVKVLESTGIEANVRCLPSEESENILEKG 200 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccccccccHHHHhh--hhhhhcccCchhhhhhheeeeeccccccceeEecchhhhhhhhhhc
Confidence 346777763 22223334688889999987 333334568999888776544322221000 0000000000 000
Q ss_pred chheeeeccCCCCCCCcceeccCCCCCCCCCCCcceeecCCCCCc-CCCCCCCCCCCCCcccCCCCCcccCCCchhhH
Q 001383 791 VSRCIRIVQTPDTELGGCVLCRGRDFCKSRFGRRTVILCDQCERE-YHVGCLKDHGMEDLQELPKGKWLCCADCKRIN 867 (1088)
Q Consensus 791 ~~rciRivk~~d~e~~~C~vCk~~d~sksgf~~g~LL~CDqC~ra-YHv~CL~p~g~~~LkEiP~g~WfCp~~C~~I~ 867 (1088)
....-........+...|.+|..+|. +..||+||.|... ||++||+ ++|-++|-+.||| .+|..+.
T Consensus 201 ~d~~~d~~~~~~~E~~~C~IC~~~Dp------EdVLLLCDsCN~~~YH~YCLD----Pdl~eiP~~eWYC-~NC~dL~ 267 (1134)
T KOG0825|consen 201 GDEKQDQISGLSQEEVKCDICTVHDP------EDVLLLCDSCNKVYYHVYCLD----PDLSESPVNEWYC-TNCSLLE 267 (1134)
T ss_pred cccccccccCcccccccceeeccCCh------HHhheeecccccceeeccccC----cccccccccceec-Ccchhhh
Confidence 00000001122334567999999764 5789999999998 9999999 5789999999999 5897553
No 38
>PRK13688 hypothetical protein; Provisional
Probab=98.27 E-value=3e-06 Score=86.81 Aligned_cols=76 Identities=16% Similarity=0.225 Sum_probs=60.0
Q ss_pred EEEeCCEEEEEEEEEEec----------CceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHH
Q 001383 971 ILTVNQVVVSAGIFRIFG----------QELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSASEAQAIW 1040 (1088)
Q Consensus 971 VL~~~~evVsaA~lri~g----------~~~AEip~VAT~~~~RgqG~gr~L~~aIE~~L~~lgV~~LvLpA~~eA~~~w 1040 (1088)
++..++++||++.+...+ .+.++|-.|+|+++|||||+|++||..+++. ++. +.+.+...|..||
T Consensus 49 ~~~~~~~~VG~~~l~~~dg~~~~~~~~~~~~~~L~~l~V~p~~rgkGiG~~Ll~~a~~~----~~~-~~~~~~~~a~~FY 123 (156)
T PRK13688 49 GIYYGDSLVARMSLYKKGGVEEPYFEDTQDYLELWKLEVLPKYQNRGYGEMLVDFAKSF----QLP-IKTIARNKSKDFW 123 (156)
T ss_pred EEEECCEEEEEEEEEecCCcccccccCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHh----CCe-EEEEeccchHHHH
Confidence 346789999988875432 4678999999999999999999999876543 443 4455667889999
Q ss_pred HhccCcEEcCHH
Q 001383 1041 TNKFGFSMMTEE 1052 (1088)
Q Consensus 1041 ~~kfGF~~i~~~ 1052 (1088)
.+ +||..++..
T Consensus 124 ~k-~GF~~~~~~ 134 (156)
T PRK13688 124 LK-LGFTPVEYK 134 (156)
T ss_pred Hh-CCCEEeEEe
Confidence 99 999988755
No 39
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=98.27 E-value=4.2e-06 Score=82.55 Aligned_cols=84 Identities=13% Similarity=0.233 Sum_probs=68.5
Q ss_pred eEEEEEEeCCEEEEEEEEEEec----CceEEEeeeeeccCcccCChhHHHHHHHHHHhhh-cCccEEEecC---hhhhHH
Q 001383 967 MYCAILTVNQVVVSAGIFRIFG----QELAELPLVATSNDCQGQGYFQSLFCCIEKLLGF-LNVKTLVLPS---ASEAQA 1038 (1088)
Q Consensus 967 fY~~VL~~~~evVsaA~lri~g----~~~AEip~VAT~~~~RgqG~gr~L~~aIE~~L~~-lgV~~LvLpA---~~eA~~ 1038 (1088)
.+.+++..++++||.+.+.... ...+++. +++.++|||||+|+.||..+++.+.. +|..++++.. -..|..
T Consensus 51 ~~~~v~~~~~~~vG~~~~~~~~~~~~~~~~~~~-~~v~p~~rg~Gig~~ll~~l~~~~~~~~~~~~i~l~v~~~N~~a~~ 129 (162)
T PRK10140 51 IKQLVACIDGDVVGHLTIDVQQRPRRSHVADFG-ICVDSRWKNRGVASALMREMIEMCDNWLRVDRIELTVFVDNAPAIK 129 (162)
T ss_pred cEEEEEEECCEEEEEEEEecccccccceEEEEE-EEECHHHcCCCHHHHHHHHHHHHHHhhCCccEEEEEEEcCCHHHHH
Confidence 4556777889999999987542 2356664 89999999999999999999999888 7988877654 367789
Q ss_pred HHHhccCcEEcCHH
Q 001383 1039 IWTNKFGFSMMTEE 1052 (1088)
Q Consensus 1039 ~w~~kfGF~~i~~~ 1052 (1088)
+|.+ +||...+..
T Consensus 130 ~y~k-~GF~~~g~~ 142 (162)
T PRK10140 130 VYKK-YGFEIEGTG 142 (162)
T ss_pred HHHH-CCCEEEeec
Confidence 9998 999987764
No 40
>PRK09831 putative acyltransferase; Provisional
Probab=98.25 E-value=2.7e-06 Score=84.37 Aligned_cols=73 Identities=12% Similarity=0.167 Sum_probs=61.9
Q ss_pred EEEEeCCEEEEEEEEEEecCceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccCcEEc
Q 001383 970 AILTVNQVVVSAGIFRIFGQELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSASEAQAIWTNKFGFSMM 1049 (1088)
Q Consensus 970 ~VL~~~~evVsaA~lri~g~~~AEip~VAT~~~~RgqG~gr~L~~aIE~~L~~lgV~~LvLpA~~eA~~~w~~kfGF~~i 1049 (1088)
+|+..+|++||.+.+.. +.+..++|.++|||||+|++||..+++.+.. +.+.+...|..||.+ +||..+
T Consensus 56 ~v~~~~~~iiG~~~~~~-----~~i~~~~v~p~~~g~GiG~~Ll~~~~~~~~~-----l~v~~~~~a~~~Y~k-~Gf~~~ 124 (147)
T PRK09831 56 RVAVINAQPVGFITCIE-----HYIDMLFVDPEYTRRGVASALLKPLIKSESE-----LTVDASITAKPFFER-YGFQTV 124 (147)
T ss_pred EEEEECCEEEEEEEehh-----ceeeeEEECHHHcCCCHHHHHHHHHHHHhhh-----eEeecchhhHHHHHH-CCCEEe
Confidence 45578899999988742 4677899999999999999999999998875 555667789999999 999999
Q ss_pred CHHH
Q 001383 1050 TEEE 1053 (1088)
Q Consensus 1050 ~~~e 1053 (1088)
+...
T Consensus 125 g~~~ 128 (147)
T PRK09831 125 KQQR 128 (147)
T ss_pred eccc
Confidence 8864
No 41
>PHA00673 acetyltransferase domain containing protein
Probab=98.20 E-value=9e-06 Score=83.47 Aligned_cols=83 Identities=12% Similarity=0.052 Sum_probs=72.4
Q ss_pred eEEEEEEeCCEEEEEEEEEEec------CceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecChhh--hHH
Q 001383 967 MYCAILTVNQVVVSAGIFRIFG------QELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSASE--AQA 1038 (1088)
Q Consensus 967 fY~~VL~~~~evVsaA~lri~g------~~~AEip~VAT~~~~RgqG~gr~L~~aIE~~L~~lgV~~LvLpA~~e--A~~ 1038 (1088)
-..+|.+.+|++||++.+.+.. ...+.|-.|-|++++||||+|++||..+++.++..|...|.++|.++ .+.
T Consensus 55 ~~llVa~~~g~vVG~~~l~~~p~l~~~~~~~~~Ie~l~V~~~~RGqGIG~~Ll~~A~~~Ar~~Gc~~lyis~~p~~~tv~ 134 (154)
T PHA00673 55 AHFLGVFRGEELVGFACLLVTPVPHFKGQLIGTTESIFVAAAHRPGGAGMALLRATEALARDLGATGLYVSGPTEGRLVQ 134 (154)
T ss_pred cEEEEEEECCEEEEEEEEEEecCCccCCccEEEEEEEEEChhccCCCHHHHHHHHHHHHHHHCCCCEEEEecCCCccchH
Confidence 3445667899999999987764 35778999999999999999999999999999999999999999875 589
Q ss_pred HHHhccCcEEcC
Q 001383 1039 IWTNKFGFSMMT 1050 (1088)
Q Consensus 1039 ~w~~kfGF~~i~ 1050 (1088)
||.+ .|++...
T Consensus 135 fy~~-~g~~~~~ 145 (154)
T PHA00673 135 LLPA-AGYRETN 145 (154)
T ss_pred HHHh-CCchhhc
Confidence 9999 9998544
No 42
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=98.19 E-value=1e-06 Score=102.78 Aligned_cols=150 Identities=17% Similarity=0.312 Sum_probs=92.4
Q ss_pred cccccccccc-----CCceEecCCCCCccccccCCCCCCCCCCcccccccccccccceeeccccccccccccccc-cccc
Q 001383 716 NDDLCGICMD-----GGDLLCCDSCPRAFHIDCVSLPGIPSGTWHCRYCMNTFQKEKFVEYNANARAAGRIEGVD-PFAQ 789 (1088)
Q Consensus 716 ndd~C~VC~d-----gGeLl~CD~C~rafH~~Cl~~~~vP~G~W~C~~C~~~~~Kek~v~~~~na~aagrveGvd-pieq 789 (1088)
..-.|.+|.. +.++..|+.|.++||+.|..+.....+.|.+..|.....-.. .-+...|+..... ++.
T Consensus 82 ~e~~~nv~~s~~~~p~~e~~~~~r~~~~~~q~~~i~~~~~~~~~~~~~c~~~~~~~~-----g~a~K~g~~a~~~l~y~- 155 (464)
T KOG4323|consen 82 SELNPNVLTSETVLPENEKVICGRCKSGYHQGCNIPRFPSLDIGESTECVFPIFSQE-----GGALKKGRLARPSLPYP- 155 (464)
T ss_pred cccCCcccccccccCchhhhhhhhhccCcccccCccCcCcCCccccccccccccccc-----cccccccccccccccCc-
Confidence 3345777763 347889999999999999987777788999999876422110 0111112222100 000
Q ss_pred cchheeeeccCCCCCCCcceeccCCCCCCCCCCCcceeecCCCCCcCCCCCCCCCCCCCcccCCCCCcccCCCchhhHHH
Q 001383 790 MVSRCIRIVQTPDTELGGCVLCRGRDFCKSRFGRRTVILCDQCEREYHVGCLKDHGMEDLQELPKGKWLCCADCKRINLA 869 (1088)
Q Consensus 790 i~~rciRivk~~d~e~~~C~vCk~~d~sksgf~~g~LL~CDqC~raYHv~CL~p~g~~~LkEiP~g~WfCp~~C~~I~~k 869 (1088)
....-|. ....-...|.+|....... .+.||+|+.|..+||..|..+..-+.+...|...||| ..|..-.+.
T Consensus 156 ~~~l~wD---~~~~~n~qc~vC~~g~~~~----~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C-~~C~~~~~~ 227 (464)
T KOG4323|consen 156 EASLDWD---SGHKVNLQCSVCYCGGPGA----GNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFC-DVCNRGPKK 227 (464)
T ss_pred ccccccC---ccccccceeeeeecCCcCc----cceeeeecccccHHHHHhccCCCCHhhccCccceEee-hhhccchhh
Confidence 0000000 0000113499998654322 3479999999999999999987655666678899999 578776666
Q ss_pred HHHHhhcCCc
Q 001383 870 LQKLVDRGEE 879 (1088)
Q Consensus 870 LqkLVa~g~e 879 (1088)
+..+-.+.+.
T Consensus 228 ~~r~t~~~~d 237 (464)
T KOG4323|consen 228 VPRLTLRWAD 237 (464)
T ss_pred cccccccccc
Confidence 6665554333
No 43
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=98.15 E-value=1.3e-06 Score=106.60 Aligned_cols=50 Identities=40% Similarity=1.037 Sum_probs=42.9
Q ss_pred cccccccccccCCceEecCCCCCccccccCCCC--CCCCCCccccccccccc
Q 001383 715 ENDDLCGICMDGGDLLCCDSCPRAFHIDCVSLP--GIPSGTWHCRYCMNTFQ 764 (1088)
Q Consensus 715 ~ndd~C~VC~dgGeLl~CD~C~rafH~~Cl~~~--~vP~G~W~C~~C~~~~~ 764 (1088)
.+...|.+|.++|++++||.|+.+||.+|++++ ..|.+.|.|+.|.....
T Consensus 45 ~~~e~c~ic~~~g~~l~c~tC~~s~h~~cl~~pl~~~p~~~~~c~Rc~~p~~ 96 (696)
T KOG0383|consen 45 AEQEACRICADGGELLWCDTCPASFHASCLGPPLTPQPNGEFICPRCFCPKN 96 (696)
T ss_pred hhhhhhhhhcCCCcEEEeccccHHHHHHccCCCCCcCCccceeeeeeccCCC
Confidence 456789999999999999999999999999865 56778899999965443
No 44
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=98.12 E-value=9.3e-07 Score=105.27 Aligned_cols=101 Identities=31% Similarity=0.773 Sum_probs=76.7
Q ss_pred ccccccccccC-----CceEecCCCCCccccccCCCC-C--CCCCCcccccccccccccceeeccccccccccccccccc
Q 001383 716 NDDLCGICMDG-----GDLLCCDSCPRAFHIDCVSLP-G--IPSGTWHCRYCMNTFQKEKFVEYNANARAAGRIEGVDPF 787 (1088)
Q Consensus 716 ndd~C~VC~dg-----GeLl~CD~C~rafH~~Cl~~~-~--vP~G~W~C~~C~~~~~Kek~v~~~~na~aagrveGvdpi 787 (1088)
....|.+|+.. |.|+-|..|...||.+|+... . +-.+.|.|+.|+.
T Consensus 17 ~~~mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crv-------------------------- 70 (694)
T KOG4443|consen 17 VCLMCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRV-------------------------- 70 (694)
T ss_pred hhhhhhhhccccccccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCcee--------------------------
Confidence 45678888854 469999999999999999732 1 1234599999984
Q ss_pred cccchheeeeccCCCCCCCcceeccCCCCCCCCCCCcceeecCCCCCcCCCCCCCCCCCCCcccCCCCCcccCC--Cchh
Q 001383 788 AQMVSRCIRIVQTPDTELGGCVLCRGRDFCKSRFGRRTVILCDQCEREYHVGCLKDHGMEDLQELPKGKWLCCA--DCKR 865 (1088)
Q Consensus 788 eqi~~rciRivk~~d~e~~~C~vCk~~d~sksgf~~g~LL~CDqC~raYHv~CL~p~g~~~LkEiP~g~WfCp~--~C~~ 865 (1088)
|..|+. ..++..+++|+.|+-+||.+|..| +++.+|.+.|+|+. .|.+
T Consensus 71 --------------------Ce~c~~------~gD~~kf~~Ck~cDvsyh~yc~~P----~~~~v~sg~~~ckk~~~c~q 120 (694)
T KOG4443|consen 71 --------------------CEACGT------TGDPKKFLLCKRCDVSYHCYCQKP----PNDKVPSGPWLCKKCTRCRQ 120 (694)
T ss_pred --------------------eeeccc------cCCcccccccccccccccccccCC----ccccccCcccccHHHHhhhh
Confidence 888874 334677999999999999999984 68899999999965 3443
Q ss_pred hHHHHHH
Q 001383 866 INLALQK 872 (1088)
Q Consensus 866 I~~kLqk 872 (1088)
....|..
T Consensus 121 c~~~lpg 127 (694)
T KOG4443|consen 121 CDSTLPG 127 (694)
T ss_pred ccccccc
Confidence 3334443
No 45
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=98.08 E-value=1.2e-05 Score=88.10 Aligned_cols=85 Identities=16% Similarity=0.211 Sum_probs=67.7
Q ss_pred ceEEEEEEeCCEEEEEEEEEEecC--ceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecCh---hhhHHHH
Q 001383 966 GMYCAILTVNQVVVSAGIFRIFGQ--ELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSA---SEAQAIW 1040 (1088)
Q Consensus 966 GfY~~VL~~~~evVsaA~lri~g~--~~AEip~VAT~~~~RgqG~gr~L~~aIE~~L~~lgV~~LvLpA~---~eA~~~w 1040 (1088)
++|.++...++++||.+.+.+... ..++|-.++|+++|||||+|+.||..+++.++..|+..+.+... ..|..||
T Consensus 199 ~~~~a~~~~~~~~vG~~~~~~~~~~~~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~~~~~g~~~v~l~v~~~N~~a~~~y 278 (292)
T TIGR03448 199 GLFLAFDDAPGELLGFHWTKVHPDEPALGEVYVVGVDPAAQGRGLGDALTLIGLHHLAARGLPAVMLYVEADNEAAVRTY 278 (292)
T ss_pred ceEEEEECCCCcEEEEEEEEecCCCCceeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEeCCCHHHHHHH
Confidence 455443222689999876666542 46888889999999999999999999999999999998887554 4689999
Q ss_pred HhccCcEEcCH
Q 001383 1041 TNKFGFSMMTE 1051 (1088)
Q Consensus 1041 ~~kfGF~~i~~ 1051 (1088)
.+ +||+....
T Consensus 279 ~k-~GF~~~~~ 288 (292)
T TIGR03448 279 EK-LGFTVAEV 288 (292)
T ss_pred HH-cCCEEccc
Confidence 98 99987653
No 46
>TIGR02406 ectoine_EctA L-2,4-diaminobutyric acid acetyltransferase. This enzyme family is the EctA of ectoine biosynthesis. Ectoine is a compatible solute, analagous to trehalose, betaines, etc., found often in halotolerant organisms. EctA is L-2,4-diaminobutyric acid acetyltransferase, also called DABA acetyltransferase.
Probab=98.05 E-value=1.7e-05 Score=80.33 Aligned_cols=82 Identities=11% Similarity=0.062 Sum_probs=65.9
Q ss_pred EEEEEE-eCCEEEEEEEEEEe--cCceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEec---ChhhhHHHHH
Q 001383 968 YCAILT-VNQVVVSAGIFRIF--GQELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLP---SASEAQAIWT 1041 (1088)
Q Consensus 968 Y~~VL~-~~~evVsaA~lri~--g~~~AEip~VAT~~~~RgqG~gr~L~~aIE~~L~~lgV~~LvLp---A~~eA~~~w~ 1041 (1088)
++++++ .++++||.+.+... ..+.+.+-.+||+++|||||+|+.|+..+++.++..++.+|.+. .-..|..+|.
T Consensus 40 ~~~v~~~~~~~ivG~~~~~~~~~~~~~~~i~~l~V~p~~rg~GiG~~L~~~l~~~a~~~~~~~i~~~v~~~N~~a~~ly~ 119 (157)
T TIGR02406 40 TSIVAESEGGEIVGFVSGYLRPDRPDVLFVWQVAVDPRARGKGLARRLLEALLERVACERVRHLETTITPDNQASRALFK 119 (157)
T ss_pred cEEEEEcCCCeEEEEEEEEecCCCCCeEEEEEEEEChHhccCcHHHHHHHHHHHHHHhCCCCEEEEEEcCCCHHHHHHHH
Confidence 445556 46799998865432 34578899999999999999999999999999999998888764 4567788998
Q ss_pred hccCcEEcC
Q 001383 1042 NKFGFSMMT 1050 (1088)
Q Consensus 1042 ~kfGF~~i~ 1050 (1088)
+ +||+...
T Consensus 120 k-~G~~~~~ 127 (157)
T TIGR02406 120 A-LARRRGV 127 (157)
T ss_pred H-hCcccCC
Confidence 8 9998643
No 47
>KOG3139 consensus N-acetyltransferase [General function prediction only]
Probab=98.05 E-value=2.1e-05 Score=80.77 Aligned_cols=74 Identities=16% Similarity=0.184 Sum_probs=62.7
Q ss_pred EEEEEEEEEec---CceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecCh---hhhHHHHHhccCcEEcCH
Q 001383 978 VVSAGIFRIFG---QELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSA---SEAQAIWTNKFGFSMMTE 1051 (1088)
Q Consensus 978 vVsaA~lri~g---~~~AEip~VAT~~~~RgqG~gr~L~~aIE~~L~~lgV~~LvLpA~---~eA~~~w~~kfGF~~i~~ 1051 (1088)
.|||....... ..-++|-.+||+++|||||+|++|+..+.+.+++.|...++|.+- ..|..+|.+ |||.....
T Consensus 68 ~VGai~ck~~~~r~~~rgyi~mLaV~~e~Rg~GIg~aLvr~aId~m~~~g~~eVvLeTe~~n~~A~~LY~s-LGF~r~~r 146 (165)
T KOG3139|consen 68 TVGAIVCKLDTHRNTLRGYIAMLAVDSEYRGQGIGKALVRKAIDAMRSRGYSEVVLETEVTNLSALRLYES-LGFKRDKR 146 (165)
T ss_pred eEEEEEEeccccCCcceEEEEEEEechhhccccHHHHHHHHHHHHHHHCCCcEEEEeccccchHHHHHHHh-cCceEecc
Confidence 57776655433 235899999999999999999999999999999999999999654 678999999 99998665
Q ss_pred H
Q 001383 1052 E 1052 (1088)
Q Consensus 1052 ~ 1052 (1088)
.
T Consensus 147 ~ 147 (165)
T KOG3139|consen 147 L 147 (165)
T ss_pred e
Confidence 3
No 48
>smart00258 SAND SAND domain.
Probab=98.04 E-value=2.8e-06 Score=76.94 Aligned_cols=63 Identities=29% Similarity=0.322 Sum_probs=53.8
Q ss_pred CCCCCceEeEEecCeee-eecceEecCceeeccCC---CccChhhhhhccCcccccccccceeccCCccchhhhh
Q 001383 633 GLEDGAEVGYFVRGEVK-FLVGYKKGFGILCTCCN---SEVSPSQFEAHAGWASRRKPFQHIYTSNGVSLHELSI 703 (1088)
Q Consensus 633 ~Lpdg~~V~Yy~~Gq~k-lL~G~k~~~GI~C~CCn---~~~SPSeFE~HAG~~srrkpy~sI~l~nG~SL~dl~~ 703 (1088)
.||+ +||.++ +|.-.+...||.+.|.+ +||||++||.++|++..++|..+|++ +|++|..+..
T Consensus 2 ~lpV-------~CG~~~g~L~~~kf~~G~~~kCI~~~~~~~TP~eFe~~~g~~~~K~WK~sIR~-~g~~Lr~L~~ 68 (73)
T smart00258 2 ELPV-------TCGTVKGILYKKKFKCGISVKCIQYEDKWFTPKEFEIEGGKGKSKDWKRSIRC-GGSSLRTLME 68 (73)
T ss_pred ccce-------eeCCeeeeeeHhhhhcCcccCCccCCCEEEChHHHHhhcCCcccCCcchheeE-CCccHHHHHH
Confidence 4677 899865 78888888899998864 49999999999999999999999965 9999998874
No 49
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=98.03 E-value=2e-05 Score=86.36 Aligned_cols=81 Identities=10% Similarity=0.023 Sum_probs=65.2
Q ss_pred EEEEEEeCCEEEEEEEEEEecCceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecCh-hhhHHHHHhccCc
Q 001383 968 YCAILTVNQVVVSAGIFRIFGQELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSA-SEAQAIWTNKFGF 1046 (1088)
Q Consensus 968 Y~~VL~~~~evVsaA~lri~g~~~AEip~VAT~~~~RgqG~gr~L~~aIE~~L~~lgV~~LvLpA~-~eA~~~w~~kfGF 1046 (1088)
+.+|+..++++||.+.+.......+++-.++|+++|||||+|++||..+++.+. +--.|++... ..|+.||.+ +||
T Consensus 47 ~~~~~~~~~~~vG~~~~~~~~~~~~~~~~l~V~p~~rg~GiG~~Ll~~~~~~~~--~~~~~~~~~~n~~a~~fy~~-~Gf 123 (292)
T TIGR03448 47 RHLVAVDSDPIVGYANLVPARGTDPAMAELVVHPAHRRRGIGRALIRALLAKGG--GRLRVWAHGDLPAARALASR-LGL 123 (292)
T ss_pred eEEEEEECCEEEEEEEEEcCCCCcceEEEEEECHhhcCCCHHHHHHHHHHHhcc--CceEEEEcCCCHHHHHHHHH-CCC
Confidence 445667889999999988875556788899999999999999999999999865 2234555543 578999998 999
Q ss_pred EEcCH
Q 001383 1047 SMMTE 1051 (1088)
Q Consensus 1047 ~~i~~ 1051 (1088)
+....
T Consensus 124 ~~~~~ 128 (292)
T TIGR03448 124 VPTRE 128 (292)
T ss_pred EEccE
Confidence 88765
No 50
>KOG3396 consensus Glucosamine-phosphate N-acetyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=98.01 E-value=1.7e-05 Score=79.51 Aligned_cols=83 Identities=13% Similarity=0.190 Sum_probs=74.2
Q ss_pred eEEEEEEeC--CEEEEEEEEEEec-----C-ceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecChhhhHH
Q 001383 967 MYCAILTVN--QVVVSAGIFRIFG-----Q-ELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSASEAQA 1038 (1088)
Q Consensus 967 fY~~VL~~~--~evVsaA~lri~g-----~-~~AEip~VAT~~~~RgqG~gr~L~~aIE~~L~~lgV~~LvLpA~~eA~~ 1038 (1088)
+|.+|++.- ++|||+|+|.|-- - .-.+|-=|+|+++||||++|+.|+..+-.++.++|+=.+.|.-.++..+
T Consensus 53 Y~i~Vied~~s~~vigtatL~IE~KfIh~~g~rGhiEDVVV~~~~rgk~LGkllv~~Lv~l~k~lgcYKi~LdC~~~nv~ 132 (150)
T KOG3396|consen 53 YYIVVIEDKESEKVIGTATLFIERKFIHGCGSRGHIEDVVVDSEYRGKQLGKLLVETLVDLAKSLGCYKIILDCDPKNVK 132 (150)
T ss_pred EEEEEEEeCCcCeEEEEEEEEEehhhhhcccccCceeEEEeChhhhhhHHhHHHHHHHHHHHHhcCcEEEEEecchhhhh
Confidence 777888754 8999999997642 2 3467888999999999999999999999999999999999999999999
Q ss_pred HHHhccCcEEcC
Q 001383 1039 IWTNKFGFSMMT 1050 (1088)
Q Consensus 1039 ~w~~kfGF~~i~ 1050 (1088)
||.+ |||+..+
T Consensus 133 FYeK-cG~s~~~ 143 (150)
T KOG3396|consen 133 FYEK-CGYSNAG 143 (150)
T ss_pred HHHH-cCccccc
Confidence 9999 9999766
No 51
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=97.99 E-value=2.2e-05 Score=94.81 Aligned_cols=85 Identities=11% Similarity=0.100 Sum_probs=68.3
Q ss_pred ceEEEEEEe--CCEEEEEEEEEEe------cCceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEec---Chh
Q 001383 966 GMYCAILTV--NQVVVSAGIFRIF------GQELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLP---SAS 1034 (1088)
Q Consensus 966 GfY~~VL~~--~~evVsaA~lri~------g~~~AEip~VAT~~~~RgqG~gr~L~~aIE~~L~~lgV~~LvLp---A~~ 1034 (1088)
+.+.+|++. +|++||.+....+ ....++|-.|+|+++|||||+|++||..+++.++..|+.+++|. .-.
T Consensus 122 ~~~~~vA~~~~~g~IVG~~~~~~~~~~~~d~~~~~~i~~l~V~P~~Rg~GIG~~Ll~~l~e~a~~~G~~~i~L~V~~~N~ 201 (547)
T TIGR03103 122 AITYLVAEDEASGAIIGTVMGVDHRKAFNDPEHGSSLWCLAVDPQAAHPGVGEALVRALAEHFQSRGCAYMDLSVMHDNE 201 (547)
T ss_pred CceEEEEEECCCCeEEEEEEEEeccccccCCCCCeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEcCCCH
Confidence 445555554 6999999975332 12347888999999999999999999999999999999998764 346
Q ss_pred hhHHHHHhccCcEEcCH
Q 001383 1035 EAQAIWTNKFGFSMMTE 1051 (1088)
Q Consensus 1035 eA~~~w~~kfGF~~i~~ 1051 (1088)
.|..||.+ +||+.++.
T Consensus 202 ~Ai~fY~k-lGf~~~~~ 217 (547)
T TIGR03103 202 QAIALYEK-LGFRRIPV 217 (547)
T ss_pred HHHHHHHH-CCCEEeeE
Confidence 78999988 99987753
No 52
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=97.96 E-value=5.7e-05 Score=74.45 Aligned_cols=82 Identities=20% Similarity=0.246 Sum_probs=66.0
Q ss_pred EEEEEE-eCCEEEEEEEEEEecC--ceEEEeeeeeccCcccCChhHHHHHHHHHHh-hhcCccEEEec---ChhhhHHHH
Q 001383 968 YCAILT-VNQVVVSAGIFRIFGQ--ELAELPLVATSNDCQGQGYFQSLFCCIEKLL-GFLNVKTLVLP---SASEAQAIW 1040 (1088)
Q Consensus 968 Y~~VL~-~~~evVsaA~lri~g~--~~AEip~VAT~~~~RgqG~gr~L~~aIE~~L-~~lgV~~LvLp---A~~eA~~~w 1040 (1088)
+.+++. .+|++||.+.++.... ..+++- +-+.++||++|+|+.|+..+++.+ ..+|+++|.+. --..++.||
T Consensus 51 ~~~~v~~~~g~iiG~~~~~~~~~~~~~~~~~-~~v~~~~~~~gig~~l~~~l~~~af~~~~~~~i~~~v~~~N~~~i~~~ 129 (155)
T PF13420_consen 51 RLFLVAEEDGKIIGYVSLRDIDPYNHTAELS-IYVSPDYRGKGIGRKLLDELIEYAFKELGIHKIYLEVFSSNEKAINFY 129 (155)
T ss_dssp EEEEEEECTTEEEEEEEEEESSSGTTEEEEE-EEEEGGGTTSSHHHHHHHHHHHHH-HHTT-CEEEEEEETT-HHHHHHH
T ss_pred cEEEEEEcCCcEEEEEEEEeeeccCCEEEEe-eEEChhHCCCcHHHHHHHHHHHHhhhccCeEEEEEEEecCCHHHHHHH
Confidence 334444 4999999999986653 578887 555599999999999999999999 99999998863 346789999
Q ss_pred HhccCcEEcCH
Q 001383 1041 TNKFGFSMMTE 1051 (1088)
Q Consensus 1041 ~~kfGF~~i~~ 1051 (1088)
.+ +||+..+.
T Consensus 130 ~~-~GF~~~g~ 139 (155)
T PF13420_consen 130 KK-LGFEEEGE 139 (155)
T ss_dssp HH-TTEEEEEE
T ss_pred Hh-CCCEEEEE
Confidence 99 99998764
No 53
>cd04301 NAT_SF N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransfera
Probab=97.96 E-value=3.5e-05 Score=62.06 Aligned_cols=61 Identities=18% Similarity=0.110 Sum_probs=55.1
Q ss_pred EEEEeCCEEEEEEEEEEec--CceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEe
Q 001383 970 AILTVNQVVVSAGIFRIFG--QELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVL 1030 (1088)
Q Consensus 970 ~VL~~~~evVsaA~lri~g--~~~AEip~VAT~~~~RgqG~gr~L~~aIE~~L~~lgV~~LvL 1030 (1088)
+++..++++||.+.+.... ...+++-.++|+++|||+|+++.||..+.+.+...|..++++
T Consensus 2 ~~~~~~~~~ig~~~~~~~~~~~~~~~l~~~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~ 64 (65)
T cd04301 2 LVAEDDGEIVGFASLSPDGSGGDTAYIGDLAVLPEYRGKGIGSALLEAAEEEARERGAKRLRL 64 (65)
T ss_pred EEEecCCEEEEEEEEEecCCCCccEEEEEEEECHHHcCcCHHHHHHHHHHHHHHHcCCcEEEe
Confidence 3456789999999998876 478999999999999999999999999999999999999886
No 54
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=97.94 E-value=2.5e-05 Score=78.36 Aligned_cols=76 Identities=18% Similarity=0.251 Sum_probs=63.2
Q ss_pred EEEEEEEEEE-ecC----ceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCc-cEEEecCh---hhhHHHHHhccCcE
Q 001383 977 VVVSAGIFRI-FGQ----ELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNV-KTLVLPSA---SEAQAIWTNKFGFS 1047 (1088)
Q Consensus 977 evVsaA~lri-~g~----~~AEip~VAT~~~~RgqG~gr~L~~aIE~~L~~lgV-~~LvLpA~---~eA~~~w~~kfGF~ 1047 (1088)
+++|....++ .+. ..++|-.|||+|+|||+|+|++|+..+++.+...+. ..++|-.. ..|+.+|.+ +||+
T Consensus 72 ~~~G~~~~~~~~~~~~~~~~~~i~~iaV~p~~r~~Gig~~Ll~~~~~~~~~~~~~~~~~L~V~~~N~~Ai~lY~~-~GF~ 150 (177)
T COG0456 72 KVVGFLLVRVVDGRPSADHEGHIYNLAVDPEYRGRGIGRALLDEALERLRERGLADKIVLEVRESNEAAIGLYRK-LGFE 150 (177)
T ss_pred ceeEEEEEEEecCCccccCccEEEEEEEChHhhcCCHHHHHHHHHHHHHHhcCCCceEEEEEecCChHHHHHHHH-cCCE
Confidence 4778777753 332 279999999999999999999999999999999986 78877655 468999999 9999
Q ss_pred EcCHHH
Q 001383 1048 MMTEEE 1053 (1088)
Q Consensus 1048 ~i~~~e 1053 (1088)
.+....
T Consensus 151 ~~~~~~ 156 (177)
T COG0456 151 VVKIRK 156 (177)
T ss_pred EEeeeh
Confidence 887644
No 55
>PHA01807 hypothetical protein
Probab=97.93 E-value=2.8e-05 Score=79.66 Aligned_cols=75 Identities=5% Similarity=0.032 Sum_probs=60.7
Q ss_pred EEEEEEeCCEEEEEEEEEEecC----ceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecCh---hhhHHHH
Q 001383 968 YCAILTVNQVVVSAGIFRIFGQ----ELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSA---SEAQAIW 1040 (1088)
Q Consensus 968 Y~~VL~~~~evVsaA~lri~g~----~~AEip~VAT~~~~RgqG~gr~L~~aIE~~L~~lgV~~LvLpA~---~eA~~~w 1040 (1088)
+.++++.++++||.+.+..... .+.+|..|.|.++|||+|+|+.||..+++.++..|+..|.+-.. ..|..+|
T Consensus 54 ~~lva~~dg~lvG~~~l~~~~~~~~~~i~~l~~lYV~pe~RG~GiG~~Ll~~~~~~Ar~~G~~~l~l~v~~~n~~a~~~y 133 (153)
T PHA01807 54 TELLVFRDGKLAGIAVLVFEDDPHVGPCLGVQWQYVLPEYRNAGVAREFLRELIRLAGEGNLPLIAFSHREGEGRYTIHY 133 (153)
T ss_pred eEEEEEECCEEEEEEEEEcCCCcceeeeccceeEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEecCCcHHHHHHH
Confidence 3456678999999999865432 23445557999999999999999999999999999999988644 4567888
Q ss_pred Hh
Q 001383 1041 TN 1042 (1088)
Q Consensus 1041 ~~ 1042 (1088)
.+
T Consensus 134 ~~ 135 (153)
T PHA01807 134 RR 135 (153)
T ss_pred Hh
Confidence 88
No 56
>PRK10514 putative acetyltransferase; Provisional
Probab=97.92 E-value=3.4e-05 Score=75.39 Aligned_cols=75 Identities=16% Similarity=0.129 Sum_probs=58.7
Q ss_pred EeCCEEEEEEEEEEecCceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccCcEEcCHH
Q 001383 973 TVNQVVVSAGIFRIFGQELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSASEAQAIWTNKFGFSMMTEE 1052 (1088)
Q Consensus 973 ~~~~evVsaA~lri~g~~~AEip~VAT~~~~RgqG~gr~L~~aIE~~L~~lgV~~LvLpA~~eA~~~w~~kfGF~~i~~~ 1052 (1088)
..++++||.+.+.- .++..++|.++|||||+|++||+.+++.+.. +...+...-..+..||.+ +||+..+..
T Consensus 56 ~~~~~~iG~~~~~~-----~~~~~~~v~p~~rgkGig~~Ll~~~~~~~~~--i~~~v~~~N~~a~~~yek-~Gf~~~~~~ 127 (145)
T PRK10514 56 DERDQPVGFMLLSG-----GHMEALFVDPDVRGCGVGRMLVEHALSLHPE--LTTDVNEQNEQAVGFYKK-MGFKVTGRS 127 (145)
T ss_pred ecCCcEEEEEEEec-----CcEeEEEECHHhccCCHHHHHHHHHHHhccc--cEEEeecCCHHHHHHHHH-CCCEEeccc
Confidence 46789999887642 3456799999999999999999999997643 444445555789999998 999998775
Q ss_pred HHH
Q 001383 1053 EQN 1055 (1088)
Q Consensus 1053 el~ 1055 (1088)
...
T Consensus 128 ~~~ 130 (145)
T PRK10514 128 EVD 130 (145)
T ss_pred ccC
Confidence 433
No 57
>PRK01346 hypothetical protein; Provisional
Probab=97.91 E-value=3.7e-05 Score=88.87 Aligned_cols=81 Identities=15% Similarity=0.097 Sum_probs=68.5
Q ss_pred EEEEEeCCEEEEEEEEEEe------cC--ceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHH
Q 001383 969 CAILTVNQVVVSAGIFRIF------GQ--ELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSASEAQAIW 1040 (1088)
Q Consensus 969 ~~VL~~~~evVsaA~lri~------g~--~~AEip~VAT~~~~RgqG~gr~L~~aIE~~L~~lgV~~LvLpA~~eA~~~w 1040 (1088)
+++++.++++||.+.+..+ +. ..+.|-.|||.|+|||||+|++||..+++.++..|+..++|.+.. ..||
T Consensus 49 ~~va~~~~~lvg~~~~~~~~~~~~~~~~~~~~~i~~v~V~P~~RgrGig~~Ll~~~l~~a~~~g~~~~~L~~~~--~~~Y 126 (411)
T PRK01346 49 TLGAFDGDEVVGTAGAFDLRLTVPGGAVLPAAGVTAVTVAPTHRRRGLLTALMREQLRRIRERGEPVAALTASE--GGIY 126 (411)
T ss_pred eEEEEECCEEEEEEEEeccccccCCCCccceeEEEEEEEChhhcCCCHHHHHHHHHHHHHHHCCCcEEEEECCc--hhhH
Confidence 4566789999999987643 22 478999999999999999999999999999999999988887654 4789
Q ss_pred HhccCcEEcCHH
Q 001383 1041 TNKFGFSMMTEE 1052 (1088)
Q Consensus 1041 ~~kfGF~~i~~~ 1052 (1088)
.+ |||......
T Consensus 127 ~r-~Gf~~~~~~ 137 (411)
T PRK01346 127 GR-FGYGPATYS 137 (411)
T ss_pred hh-CCCeeccce
Confidence 98 999887764
No 58
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=97.89 E-value=3e-06 Score=105.08 Aligned_cols=130 Identities=31% Similarity=0.520 Sum_probs=84.1
Q ss_pred CccccccccccccCCceEecCCCCCccccccCCCC--CCCCCCcccccccccccccceeecccccccccccccccccc-c
Q 001383 713 SKENDDLCGICMDGGDLLCCDSCPRAFHIDCVSLP--GIPSGTWHCRYCMNTFQKEKFVEYNANARAAGRIEGVDPFA-Q 789 (1088)
Q Consensus 713 s~~ndd~C~VC~dgGeLl~CD~C~rafH~~Cl~~~--~vP~G~W~C~~C~~~~~Kek~v~~~~na~aagrveGvdpie-q 789 (1088)
...-+|.|.+|.+.|.++||..|++.||..|..+| .+|+..|.|-.|.. ++. +. -+.++-+.+ +
T Consensus 340 ~~~~ddhcrf~~d~~~~lc~Et~prvvhlEcv~hP~~~~~s~~~e~evc~~--hkv-------ng----vvd~vl~~~K~ 406 (1414)
T KOG1473|consen 340 EIEYDDHCRFCHDLGDLLCCETCPRVVHLECVFHPRFAVPSAFWECEVCNI--HKV-------NG----VVDCVLPPSKN 406 (1414)
T ss_pred ceeecccccccCcccceeecccCCceEEeeecCCccccCCCccchhhhhhh--hcc-------Cc----ccccccChhhc
Confidence 34567899999999999999999999999999866 78899999999973 111 00 000111100 0
Q ss_pred cch-heeeec-----cCCCCCCCcceeccCCCCCCCCCCCcceeecCC-CCCcCCC-CCCCCCCCCCcccCCCCCcccCC
Q 001383 790 MVS-RCIRIV-----QTPDTELGGCVLCRGRDFCKSRFGRRTVILCDQ-CEREYHV-GCLKDHGMEDLQELPKGKWLCCA 861 (1088)
Q Consensus 790 i~~-rciRiv-----k~~d~e~~~C~vCk~~d~sksgf~~g~LL~CDq-C~raYHv-~CL~p~g~~~LkEiP~g~WfCp~ 861 (1088)
... |+.-+- ....-....|.+|.. +++++.|+. |++.||. .||+..- --..++++-|+|+
T Consensus 407 ~~~iR~~~iG~dr~gr~ywfi~rrl~Ie~~---------det~l~yysT~pqly~ll~cLd~~~--~e~~L~d~i~~~~- 474 (1414)
T KOG1473|consen 407 VDSIRHTPIGRDRYGRKYWFISRRLRIEGM---------DETLLWYYSTCPQLYHLLRCLDRTY--VEMYLCDGIWERR- 474 (1414)
T ss_pred ccceeccCCCcCccccchhceeeeeEEecC---------CCcEEEEecCcHHHHHHHHHhchHH--HHHhhccchhhhH-
Confidence 000 110000 000111235899986 467899996 9999999 9998532 1236788999995
Q ss_pred CchhhH
Q 001383 862 DCKRIN 867 (1088)
Q Consensus 862 ~C~~I~ 867 (1088)
+|-.-+
T Consensus 475 ee~~rq 480 (1414)
T KOG1473|consen 475 EEIIRQ 480 (1414)
T ss_pred HHHHHh
Confidence 665433
No 59
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=97.85 E-value=5.8e-06 Score=98.75 Aligned_cols=140 Identities=25% Similarity=0.520 Sum_probs=85.0
Q ss_pred ceeeccCCCccChhhhhhccCcccccccccceeccCCccchhhhhhhccCCCCCCccccccccccc---cCCceEecCCC
Q 001383 659 GILCTCCNSEVSPSQFEAHAGWASRRKPFQHIYTSNGVSLHELSIKLSLERPFSSKENDDLCGICM---DGGDLLCCDSC 735 (1088)
Q Consensus 659 GI~C~CCn~~~SPSeFE~HAG~~srrkpy~sI~l~nG~SL~dl~~~l~k~~k~ss~~ndd~C~VC~---dgGeLl~CD~C 735 (1088)
-..|++|+..+||.+.-.-+- +..+.+||.-++ .-.|..|+ |...+++|+.|
T Consensus 35 m~ac~~c~~~yH~~cvt~~~~---------~~~l~~gWrC~~----------------crvCe~c~~~gD~~kf~~Ck~c 89 (694)
T KOG4443|consen 35 LLACSDCGQKYHPYCVTSWAQ---------HAVLSGGWRCPS----------------CRVCEACGTTGDPKKFLLCKRC 89 (694)
T ss_pred chhhhhhcccCCcchhhHHHh---------HHHhcCCcccCC----------------ceeeeeccccCCcccccccccc
Confidence 467999999999988765333 222333433332 23577777 44579999999
Q ss_pred CCccccccCCCC--CCCCCCcccccccccccccceeeccccccccc-cccccccccccchheeeeccCCCCCCCcceecc
Q 001383 736 PRAFHIDCVSLP--GIPSGTWHCRYCMNTFQKEKFVEYNANARAAG-RIEGVDPFAQMVSRCIRIVQTPDTELGGCVLCR 812 (1088)
Q Consensus 736 ~rafH~~Cl~~~--~vP~G~W~C~~C~~~~~Kek~v~~~~na~aag-rveGvdpieqi~~rciRivk~~d~e~~~C~vCk 812 (1088)
+-+||-+|..|+ .++.|.|+|+.|....+ +.....| ...-...+.+. .-|. ....|.+|.
T Consensus 90 Dvsyh~yc~~P~~~~v~sg~~~ckk~~~c~q--------c~~~lpg~s~~~~~~~~~~-~~c~--------s~~~cPvc~ 152 (694)
T KOG4443|consen 90 DVSYHCYCQKPPNDKVPSGPWLCKKCTRCRQ--------CDSTLPGLSLDLQEGYLQC-APCA--------SLSYCPVCL 152 (694)
T ss_pred cccccccccCCccccccCcccccHHHHhhhh--------ccccccccchhhhccCccc-cccc--------ccccCchHH
Confidence 999999999866 79999999998875322 2222222 11000000000 0111 124577776
Q ss_pred CCCCCCCCCCCcceeecCCCCCcCCCCCCCC
Q 001383 813 GRDFCKSRFGRRTVILCDQCEREYHVGCLKD 843 (1088)
Q Consensus 813 ~~d~sksgf~~g~LL~CDqC~raYHv~CL~p 843 (1088)
..-... ..-.++.|++|.+|-|-.|-.-
T Consensus 153 ~~Y~~~---e~~~~~~c~~c~rwsh~~c~~~ 180 (694)
T KOG4443|consen 153 IVYQDS---ESLPMVCCSICQRWSHGGCDGI 180 (694)
T ss_pred Hhhhhc---cchhhHHHHHhcccccCCCCcc
Confidence 532111 1123589999999999999764
No 60
>PRK15130 spermidine N1-acetyltransferase; Provisional
Probab=97.83 E-value=9e-05 Score=75.94 Aligned_cols=82 Identities=18% Similarity=0.141 Sum_probs=67.4
Q ss_pred EEEEEEeCCEEEEEEEEEEec--CceEEEeeeeeccCcccCChhHHHHHHHHHHhh-hcCccEEEecC---hhhhHHHHH
Q 001383 968 YCAILTVNQVVVSAGIFRIFG--QELAELPLVATSNDCQGQGYFQSLFCCIEKLLG-FLNVKTLVLPS---ASEAQAIWT 1041 (1088)
Q Consensus 968 Y~~VL~~~~evVsaA~lri~g--~~~AEip~VAT~~~~RgqG~gr~L~~aIE~~L~-~lgV~~LvLpA---~~eA~~~w~ 1041 (1088)
+.++++.++++||.+.+.... ...+++. +++.++|||+|+|+.|+..+.+.+. .+|+++|++.. -..+..+|.
T Consensus 58 ~~~~i~~~g~~iG~~~~~~~~~~~~~~~~~-~~v~~~~~g~G~g~~l~~~l~~~~~~~~~~~rv~~~v~~~N~~s~~~ye 136 (186)
T PRK15130 58 RRFVVECDGEKAGLVELVEINHVHRRAEFQ-IIISPEYQGKGLATRAAKLAMDYGFTVLNLYKLYLIVDKENEKAIHIYR 136 (186)
T ss_pred cEEEEEECCEEEEEEEEEeecCCCCeEEEE-EEECHHHcCCCHHHHHHHHHHHHHhhcCCceEEEEEEccCCHHHHHHHH
Confidence 345567899999999986654 2467774 8999999999999999999998875 68999998864 347899999
Q ss_pred hccCcEEcCH
Q 001383 1042 NKFGFSMMTE 1051 (1088)
Q Consensus 1042 ~kfGF~~i~~ 1051 (1088)
+ +||+..+.
T Consensus 137 k-~GF~~~~~ 145 (186)
T PRK15130 137 K-LGFEVEGE 145 (186)
T ss_pred H-CCCEEEEE
Confidence 9 99998765
No 61
>PRK10562 putative acetyltransferase; Provisional
Probab=97.83 E-value=5.9e-05 Score=74.37 Aligned_cols=76 Identities=9% Similarity=0.057 Sum_probs=59.1
Q ss_pred EEEEeCCEEEEEEEEEEecCceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccCcEEc
Q 001383 970 AILTVNQVVVSAGIFRIFGQELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSASEAQAIWTNKFGFSMM 1049 (1088)
Q Consensus 970 ~VL~~~~evVsaA~lri~g~~~AEip~VAT~~~~RgqG~gr~L~~aIE~~L~~lgV~~LvLpA~~eA~~~w~~kfGF~~i 1049 (1088)
+++..++++||.+.+... ..+..++|.++|||+|||+.||..+++.+..+.+ .+...-..+..||.+ +||+.+
T Consensus 51 ~v~~~~~~~iG~~~~~~~----~~i~~~~v~~~~rg~G~g~~ll~~~~~~~~~~~~--~v~~~N~~s~~~y~k-~Gf~~~ 123 (145)
T PRK10562 51 WVWEEDGKLLGFVSVLEG----RFVGALFVAPKAVRRGIGKALMQHVQQRYPHLSL--EVYQKNQRAVNFYHA-QGFRIV 123 (145)
T ss_pred EEEEECCEEEEEEEEeec----cEEEEEEECHHHcCCCHHHHHHHHHHhhCCeEEE--EEEcCChHHHHHHHH-CCCEEc
Confidence 455678999999987432 4577899999999999999999999987654322 233445678999999 999998
Q ss_pred CHH
Q 001383 1050 TEE 1052 (1088)
Q Consensus 1050 ~~~ 1052 (1088)
+..
T Consensus 124 ~~~ 126 (145)
T PRK10562 124 DSA 126 (145)
T ss_pred ccc
Confidence 863
No 62
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=97.80 E-value=0.0001 Score=68.25 Aligned_cols=74 Identities=15% Similarity=0.187 Sum_probs=55.0
Q ss_pred CEEEEEEEEEEecCceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEE-Ee-cChhhhHHHHHhccCcEEcCH
Q 001383 976 QVVVSAGIFRIFGQELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTL-VL-PSASEAQAIWTNKFGFSMMTE 1051 (1088)
Q Consensus 976 ~evVsaA~lri~g~~~AEip~VAT~~~~RgqG~gr~L~~aIE~~L~~lgV~~L-vL-pA~~eA~~~w~~kfGF~~i~~ 1051 (1088)
++.+..+.-.+.... ++|-.|.|.|+|||+|||+.|+.++.+.+...|..-+ ++ ..-..|..+|++ +||+.+.+
T Consensus 7 ~~~~~l~~~~~~~~~-g~i~~v~t~p~~RrrGlg~~lv~~l~~~~~~~g~~~~l~v~~~N~~s~~ly~k-lGf~~~~~ 82 (86)
T PF08445_consen 7 GELVALVAWIIRSDD-GEIGGVYTLPEHRRRGLGSALVAALARELLERGKTPFLYVDADNEASIRLYEK-LGFREIEE 82 (86)
T ss_dssp TCCEEEEEEEEESCT-CCEEEEEE-GGGTTSSHHHHHHHHHHHHHHHTTSEEEEEEETT-HHHHHHHHH-CT-EEEEE
T ss_pred CCccceeeEeeeCCC-cEEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHH-cCCEEEEE
Confidence 355555555555544 9999999999999999999999999999888887643 23 234467899999 99998743
No 63
>PF13523 Acetyltransf_8: Acetyltransferase (GNAT) domain; PDB: 2VQY_A 2BUE_A 1V0C_A 1YK3_D 2PR8_A 2QIR_A 2PRB_A 2QML_A 2PC1_A.
Probab=97.78 E-value=0.00017 Score=71.44 Aligned_cols=87 Identities=14% Similarity=0.086 Sum_probs=68.5
Q ss_pred eceEEEEEEeCCEEEEEEEEEE------ecCceEEEeeeeeccCcccCChhHHHHHHHHHHhhhc-CccEEEecChh---
Q 001383 965 HGMYCAILTVNQVVVSAGIFRI------FGQELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFL-NVKTLVLPSAS--- 1034 (1088)
Q Consensus 965 ~GfY~~VL~~~~evVsaA~lri------~g~~~AEip~VAT~~~~RgqG~gr~L~~aIE~~L~~l-gV~~LvLpA~~--- 1034 (1088)
.+++.+|++.+|++||.+.+.- .....+.+-.+++.++|||||+|+.+|.++.+.+..- ++++|++...+
T Consensus 46 ~~~~~~v~~~dg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~G~g~~~~~~~~~~~~~~~~~~~i~~~~~~~N~ 125 (152)
T PF13523_consen 46 PGHHPYVAEDDGEPIGYFEIYWPDEDYDADDGDRGIHRLIVDPEYRGQGLGKAMLRALIEFLFEDPGVDRIVLDPHEDNT 125 (152)
T ss_dssp TTEEEEEEEETTEEEEEEEEEEGGGSS---TTEEEEEEEESTGGGTTSSHHHHHHHHHHHHHHTSTT--EEEEEEBTT-H
T ss_pred CCceEEEEEECCEEEEEEEEecccccccCCCCEEEEeeeeechhhcCCCHHHHHHHHHHHHHHhCCCCCEEEEecCcCCH
Confidence 4677888899999999887642 1345778999999999999999999999999887765 89999997654
Q ss_pred hhHHHHHhccCcEEcCHH
Q 001383 1035 EAQAIWTNKFGFSMMTEE 1052 (1088)
Q Consensus 1035 eA~~~w~~kfGF~~i~~~ 1052 (1088)
-++..|++ +||+.++.-
T Consensus 126 ~~~~~~~k-~GF~~~g~~ 142 (152)
T PF13523_consen 126 RAIRLYEK-AGFRKVGEF 142 (152)
T ss_dssp HHHHHHHH-TT-EEEEEE
T ss_pred HHHHHHHH-cCCEEeeEE
Confidence 67888887 999987653
No 64
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=97.77 E-value=8.6e-05 Score=83.79 Aligned_cols=82 Identities=10% Similarity=0.024 Sum_probs=68.9
Q ss_pred ceEEEEEEe---CCEEEEEEEEEEecCceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecC-----hhhhH
Q 001383 966 GMYCAILTV---NQVVVSAGIFRIFGQELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPS-----ASEAQ 1037 (1088)
Q Consensus 966 GfY~~VL~~---~~evVsaA~lri~g~~~AEip~VAT~~~~RgqG~gr~L~~aIE~~L~~lgV~~LvLpA-----~~eA~ 1037 (1088)
..|++.+.. ++.+||.+.++.. .+.++|-.+++++.|||+|+|++||..+++.++..|+.+|+|.. -..|.
T Consensus 230 ~~~~~~~~d~~gd~givG~~~~~~~-~~~~~I~~l~vs~r~~grGig~~Ll~~l~~~a~~~G~~~i~l~v~~~~~N~~A~ 308 (320)
T TIGR01686 230 EIVTVSMSDRFGDSGIIGIFVFEKK-EGNLFIDDLCMSCRALGRGVETRMLRWLFEQALDLGNHNARLYYRRTERNMPFL 308 (320)
T ss_pred CEEEEEEEecCCCCceEEEEEEEec-CCcEEEEEEEEcHhHhcCcHHHHHHHHHHHHHHHcCCCeEEEEEeeCCCchHHH
Confidence 355555543 5789999998764 46789999999999999999999999999999999999998854 35789
Q ss_pred HHHHhccCcEEc
Q 001383 1038 AIWTNKFGFSMM 1049 (1088)
Q Consensus 1038 ~~w~~kfGF~~i 1049 (1088)
.||.+ +||...
T Consensus 309 ~fY~~-~GF~~~ 319 (320)
T TIGR01686 309 SFYEQ-IGFEDE 319 (320)
T ss_pred HHHHH-cCCccC
Confidence 99998 999854
No 65
>TIGR03585 PseH pseudaminic acid biosynthesis N-acetyl transferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.
Probab=97.76 E-value=0.00015 Score=71.33 Aligned_cols=81 Identities=16% Similarity=0.107 Sum_probs=66.7
Q ss_pred EEEEeCCEEEEEEEEEEec--CceEEEeeeeeccCcccCChhHHHHHHHHHHhh-hcCccEEEe---cChhhhHHHHHhc
Q 001383 970 AILTVNQVVVSAGIFRIFG--QELAELPLVATSNDCQGQGYFQSLFCCIEKLLG-FLNVKTLVL---PSASEAQAIWTNK 1043 (1088)
Q Consensus 970 ~VL~~~~evVsaA~lri~g--~~~AEip~VAT~~~~RgqG~gr~L~~aIE~~L~-~lgV~~LvL---pA~~eA~~~w~~k 1043 (1088)
+++..+|++||.+.+.... ...+++... +.+.+| +|||+.++.++++.+. .+++.+|++ +.-..++.+|.+
T Consensus 54 ~~~~~~g~~vG~~~~~~~~~~~~~~~~g~~-~~~~~~-~G~g~~~~~~~~~~a~~~~~~~~i~~~v~~~N~~s~~~y~k- 130 (156)
T TIGR03585 54 WIVCQESRPIGVISFTDINLVHKSAFWGIY-ANPFCK-PGVGSVLEEAALEYAFEHLGLHKLSLEVLEFNNKALKLYEK- 130 (156)
T ss_pred EEEEECCEEEEEEEEEecChhhCeEEEEEE-eChhhh-cCchHHHHHHHHHHHHhhCCeeEEEEEEeccCHHHHHHHHH-
Confidence 3446789999999997665 457788765 889999 9999999999999987 589999987 455678899999
Q ss_pred cCcEEcCHHH
Q 001383 1044 FGFSMMTEEE 1053 (1088)
Q Consensus 1044 fGF~~i~~~e 1053 (1088)
+||+..+...
T Consensus 131 ~Gf~~~g~~~ 140 (156)
T TIGR03585 131 FGFEREGVFR 140 (156)
T ss_pred cCCeEeeeeh
Confidence 9999887543
No 66
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=97.74 E-value=1e-05 Score=67.47 Aligned_cols=43 Identities=47% Similarity=1.152 Sum_probs=36.1
Q ss_pred ccccccc---CCceEecCCCCCccccccCCCC----CCCCCCcccccccc
Q 001383 719 LCGICMD---GGDLLCCDSCPRAFHIDCVSLP----GIPSGTWHCRYCMN 761 (1088)
Q Consensus 719 ~C~VC~d---gGeLl~CD~C~rafH~~Cl~~~----~vP~G~W~C~~C~~ 761 (1088)
+|.+|+. .++++.|+.|.+.||..|++++ ..+.+.|+|+.|..
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 4788886 6799999999999999999977 33456999999974
No 67
>PF01342 SAND: SAND domain; InterPro: IPR000770 The SAND domain (named after Sp100, AIRE-1, NucP41/75, DEAF-1) is a conserved ~80 residue region found in a number of nuclear proteins, many of which function in chromatin-dependent transcriptional control. These include proteins linked to various human diseases, such as the Sp100 (Speckled protein 100 kDa), NUDR (Nuclear DEAF-1 related), GMEB (Glucocorticoid Modulatory Element Binding) proteins and AIRE-1 (Autoimmune regulator 1) proteins. Proteins containing the SAND domain have a modular structure; the SAND domain can be associated with a number of other modules, including the bromodomain, the PHD finger and the MYND finger. Because no SAND domain has been found in yeast, it is thought that the SAND domain could be restricted to animal phyla. Many SAND domain-containing proteins, including NUDR, DEAF-1 (Deformed epidermal autoregulatory factor-1) and GMEB, have been shown to bind DNA sequences specifically. The SAND domain has been proposed to mediate the DNA binding activity of these proteins [, ]. The resolution of the 3D structure of the SAND domain from Sp100b has revealed that it consists of a novel alpha/beta fold. The SAND domain adopts a compact fold consisting of a strongly twisted, five-stranded antiparallel beta-sheet with four alpha-helices packing against one side of the beta-sheet. The opposite side of the beta-sheet is solvent exposed. The beta-sheet and alpha-helical parts of the structure form two distinct regions. Multiple hydrophobic residues pack between these regions to form a structural core. A conserved KDWK sequence motif is found within the alpha-helical, positively charged surface patch. The DNA binding surface has been mapped to the alpha-helical region encompassing the KDWK motif [].; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 1OQJ_B 1UFN_A 1H5P_A.
Probab=97.71 E-value=3.7e-06 Score=77.95 Aligned_cols=67 Identities=33% Similarity=0.417 Sum_probs=48.7
Q ss_pred cccCCCCCCceEeEEecCeee-eecceEe-cCceeecc--C-CCccChhhhhhccCcccccccccceeccCCccchhhhh
Q 001383 629 FEEGGLEDGAEVGYFVRGEVK-FLVGYKK-GFGILCTC--C-NSEVSPSQFEAHAGWASRRKPFQHIYTSNGVSLHELSI 703 (1088)
Q Consensus 629 F~~~~Lpdg~~V~Yy~~Gq~k-lL~G~k~-~~GI~C~C--C-n~~~SPSeFE~HAG~~srrkpy~sI~l~nG~SL~dl~~ 703 (1088)
|.+..||+ +||..+ +|.-.+. ..|+...| + +.||||++||.|+|+.+.++|+.+|++ +|.+|..++.
T Consensus 6 ~~~~~lpV-------tCG~~~G~L~~~k~~~~g~~~kCI~~~g~~~TP~eFE~~~G~~~sK~WK~SIr~-~g~~L~~li~ 77 (82)
T PF01342_consen 6 FSDPELPV-------TCGDVKGTLYKKKFVKQGICGKCIQCEGRWFTPSEFERHGGKGSSKDWKRSIRC-GGEPLGKLIE 77 (82)
T ss_dssp GGCSEEEE-------EETTEEEEEEHHHH-TTGTTSS-EEETTEEE-HHHHHHHHTTCTCS-HHHHSEE-TTEEHHHHHH
T ss_pred ccCCeEee-------EeCCeEEEEEHHHhhcccccCceEeeCCcEECHHHHHhhcCcccCCCCCccEEE-CCEEHHHHHh
Confidence 55667777 899755 5555444 44544333 2 559999999999999999999999987 9999998874
No 68
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=97.67 E-value=9.6e-06 Score=67.59 Aligned_cols=48 Identities=33% Similarity=0.906 Sum_probs=35.5
Q ss_pred ceeccCCCCCCCCCCCcceeecCCCCCcCCCCCCCCCCCCCcccCCCCCcccCCCch
Q 001383 808 CVLCRGRDFCKSRFGRRTVILCDQCEREYHVGCLKDHGMEDLQELPKGKWLCCADCK 864 (1088)
Q Consensus 808 C~vCk~~d~sksgf~~g~LL~CDqC~raYHv~CL~p~g~~~LkEiP~g~WfCp~~C~ 864 (1088)
|.+|++. ...+.+|.|+.|.++||..|+.++. .....+...|+|+ .|.
T Consensus 2 C~vC~~~------~~~~~~i~C~~C~~~~H~~C~~~~~--~~~~~~~~~w~C~-~C~ 49 (51)
T PF00628_consen 2 CPVCGQS------DDDGDMIQCDSCNRWYHQECVGPPE--KAEEIPSGDWYCP-NCR 49 (51)
T ss_dssp BTTTTSS------CTTSSEEEBSTTSCEEETTTSTSSH--SHHSHHSSSBSSH-HHH
T ss_pred CcCCCCc------CCCCCeEEcCCCChhhCcccCCCCh--hhccCCCCcEECc-CCc
Confidence 7889883 2357899999999999999999642 1223444599995 564
No 69
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=97.65 E-value=0.00012 Score=88.17 Aligned_cols=77 Identities=14% Similarity=0.244 Sum_probs=64.8
Q ss_pred eCCEEEEEEEEEEecCceE-----------EEeeeee--------ccCcccCChhHHHHHHHHHHhhhcCccEEEecChh
Q 001383 974 VNQVVVSAGIFRIFGQELA-----------ELPLVAT--------SNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSAS 1034 (1088)
Q Consensus 974 ~~~evVsaA~lri~g~~~A-----------Eip~VAT--------~~~~RgqG~gr~L~~aIE~~L~~lgV~~LvLpA~~ 1034 (1088)
.++.+||-.+||....+.. ||-..++ .++|||||+|+.||.++|+.|++.|++.|+|.+..
T Consensus 421 ~~~~l~G~lrlr~~~~~~~~~~~~~~a~IrelhV~G~~~~~~~~~~~~~rg~GiG~~Ll~~ae~~Ar~~G~~~i~v~s~~ 500 (522)
T TIGR01211 421 KNDILIGFLRLRFPSEPAHRKEVDATALVRELHVYGSEVPIGERGDDEWQHRGYGRRLLEEAERIAAEEGSEKILVISGI 500 (522)
T ss_pred CCCeEEEEEEEecCcccccccccCCCceEEEEEEeeeeccccccCChhHhCcCHHHHHHHHHHHHHHHCCCCEEEEeeCc
Confidence 4578899988887654322 5555544 58999999999999999999999999999999999
Q ss_pred hhHHHHHhccCcEEcCH
Q 001383 1035 EAQAIWTNKFGFSMMTE 1051 (1088)
Q Consensus 1035 eA~~~w~~kfGF~~i~~ 1051 (1088)
.|..||.+ +||...++
T Consensus 501 ~A~~FY~k-lGf~~~g~ 516 (522)
T TIGR01211 501 GVREYYRK-LGYELDGP 516 (522)
T ss_pred hHHHHHHH-CCCEEEcc
Confidence 99999998 99997764
No 70
>COG3153 Predicted acetyltransferase [General function prediction only]
Probab=97.65 E-value=0.00028 Score=73.80 Aligned_cols=104 Identities=17% Similarity=0.177 Sum_probs=79.1
Q ss_pred EEEEeCCEEEEEEEEEEe--c---CceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhcc
Q 001383 970 AILTVNQVVVSAGIFRIF--G---QELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSASEAQAIWTNKF 1044 (1088)
Q Consensus 970 ~VL~~~~evVsaA~lri~--g---~~~AEip~VAT~~~~RgqG~gr~L~~aIE~~L~~lgV~~LvLpA~~eA~~~w~~kf 1044 (1088)
+|...+|++|+..++--. + ....=|-.+||+++|||||+|++||...++.|+.+|...+++.-. -.+| .+|
T Consensus 49 lVA~d~g~vvG~Il~s~v~~~g~~~~~~~LaPLaV~p~~qg~GIG~~Lvr~~le~a~~~G~~~v~vlGd---p~YY-~rf 124 (171)
T COG3153 49 LVAEDDGEVVGHILFSPVTVGGEELGWLGLAPLAVDPEYQGQGIGSALVREGLEALRLAGASAVVVLGD---PTYY-SRF 124 (171)
T ss_pred EEEeeCCEEEEEEEEeEEEecCcccceEEEEeEEEchhhcCCcHHHHHHHHHHHHHHHCCCCEEEEecC---cccc-ccc
Confidence 455788999999887543 2 145667889999999999999999999999999999999988665 4466 559
Q ss_pred CcEEcCHHHHHhhhcccCeeeeCCceeeeccCCCCcccc
Q 001383 1045 GFSMMTEEEQNKYRNDYPLMIFQGTSMLQKPVPKCRIVG 1083 (1088)
Q Consensus 1045 GF~~i~~~el~~~~~~~~ll~F~GT~mLqK~l~~~~~~~ 1083 (1088)
||+......+.- .. . +|.+.+|-+.|..--+.+
T Consensus 125 GF~~~~~~~l~~---p~--~-~~~~~fl~~~L~~~~l~~ 157 (171)
T COG3153 125 GFEPAAGAKLYA---PG--P-VPDERFLALELGDGALEG 157 (171)
T ss_pred CcEEcccccccc---CC--C-CCCceEEEEEccCCcccC
Confidence 999887654322 22 2 578888888887643333
No 71
>COG3393 Predicted acetyltransferase [General function prediction only]
Probab=97.65 E-value=0.00013 Score=80.19 Aligned_cols=85 Identities=20% Similarity=0.233 Sum_probs=69.4
Q ss_pred ceEEEEEEeCCEEEEEEEEEEecCceEEEeeeeeccCcccCChhHHHHHHHHHH-hhhcCccEEEecCh-hhhHHHHHhc
Q 001383 966 GMYCAILTVNQVVVSAGIFRIFGQELAELPLVATSNDCQGQGYFQSLFCCIEKL-LGFLNVKTLVLPSA-SEAQAIWTNK 1043 (1088)
Q Consensus 966 GfY~~VL~~~~evVsaA~lri~g~~~AEip~VAT~~~~RgqG~gr~L~~aIE~~-L~~lgV~~LvLpA~-~eA~~~w~~k 1043 (1088)
.+.++.+..+|+||+.|...-.+...|+|-.|.|.|+|||+||+.+|+.++-.. |.+=...-|+..+. +-|-.+|.+
T Consensus 176 ~~~~~f~~~d~~iVa~A~t~a~~~~~~~I~gV~T~peyR~kGyAt~lva~L~~~lL~eGk~~~L~~~~~N~~A~~iY~r- 254 (268)
T COG3393 176 RSRTYFLEGDGKIVAKAETAAENPAYAQINGVYTHPEYRGKGYATALVATLAAKLLAEGKIPCLFVNSDNPVARRIYQR- 254 (268)
T ss_pred ceeEEEEccCCcEEEeeeccccCCcceEEEEEEcCHHHccccHHHHHHHHHHHHHHhCCCeeEEEEecCCHHHHHHHHH-
Confidence 355666677779999999999999999999999999999999999999998655 44445556666433 567889999
Q ss_pred cCcEEcCH
Q 001383 1044 FGFSMMTE 1051 (1088)
Q Consensus 1044 fGF~~i~~ 1051 (1088)
+||+.+++
T Consensus 255 iGF~~~g~ 262 (268)
T COG3393 255 IGFREIGE 262 (268)
T ss_pred hCCeecce
Confidence 99998764
No 72
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF13718 GNAT_acetyltr_2: GNAT acetyltransferase 2; PDB: 2ZPA_B.
Probab=97.58 E-value=0.00033 Score=74.75 Aligned_cols=88 Identities=19% Similarity=0.154 Sum_probs=64.3
Q ss_pred ceeceEEEEEEeCC--EEEEEEEEEEec-------------------------------------CceEEEeeeeeccCc
Q 001383 963 DYHGMYCAILTVNQ--VVVSAGIFRIFG-------------------------------------QELAELPLVATSNDC 1003 (1088)
Q Consensus 963 ~f~GfY~~VL~~~~--evVsaA~lri~g-------------------------------------~~~AEip~VAT~~~~ 1003 (1088)
|=.+...++|..++ +|++|+-+-..| -.-++|-+|||.|++
T Consensus 23 DaP~h~l~~l~~~~~p~il~~~~v~~EG~l~~~l~~~i~~g~rRp~G~LiP~~L~~~~~~~~f~~l~g~RIvRIAvhP~~ 102 (196)
T PF13718_consen 23 DAPNHRLFVLLQPGDPDILGVAQVALEGGLSKELIEAILSGGRRPKGHLIPQTLAQHFGDPEFAQLSGARIVRIAVHPDL 102 (196)
T ss_dssp H-TTEEEEEEE-SS--SEEEEEEEEEEE---HHHHHHHHTTS---SS-HHHHHHHHHSS-TTGGGSEEEEEEEEEE-CCC
T ss_pred cCCcceeehhccCCCceEEEEEEEEecCCCCHHHHHHHHhCCCCCCCCCHHHHHHHHhCCHHHHhhcceeEEEEEEChhh
Confidence 44567778888888 999999887665 236788999999999
Q ss_pred ccCChhHHHHHHHHHHh-------------------------hhcCccEEEe--cChhhhHHHHHhccCcEEcCH
Q 001383 1004 QGQGYFQSLFCCIEKLL-------------------------GFLNVKTLVL--PSASEAQAIWTNKFGFSMMTE 1051 (1088)
Q Consensus 1004 RgqG~gr~L~~aIE~~L-------------------------~~lgV~~LvL--pA~~eA~~~w~~kfGF~~i~~ 1051 (1088)
|++|||++|++.+++.+ +.-+|.+|=. .+.++...||.+ .||.++-=
T Consensus 103 q~~G~Gs~lL~~l~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~vDylGtSFG~t~~Ll~FW~k-~gf~pv~l 176 (196)
T PF13718_consen 103 QRMGYGSRLLQQLEQYAEGKIPSLSEQDKEKLPPLLSKLSDRRPPGVDYLGTSFGATPELLKFWQK-NGFVPVYL 176 (196)
T ss_dssp -SSSHHHHHHHHHHHT-----------------------------S-SEEEEEEE--HHHHHHHHC-TT-EEEEE
T ss_pred hcCCHHHHHHHHHHHHHhhhcccccccccccccccccccccccccCCCEEEeccCCCHHHHHHHHH-CCcEEEEE
Confidence 99999999999999999 4678887655 477899999999 99998744
No 74
>PRK10809 ribosomal-protein-S5-alanine N-acetyltransferase; Provisional
Probab=97.49 E-value=0.0005 Score=71.11 Aligned_cols=83 Identities=10% Similarity=0.139 Sum_probs=66.1
Q ss_pred eEEEEEEeCCEEEEEEEEEEecC---ceEEEeeeeeccCcccCChhHHHHHHHHHHhhh-cCccEEEecChh---hhHHH
Q 001383 967 MYCAILTVNQVVVSAGIFRIFGQ---ELAELPLVATSNDCQGQGYFQSLFCCIEKLLGF-LNVKTLVLPSAS---EAQAI 1039 (1088)
Q Consensus 967 fY~~VL~~~~evVsaA~lri~g~---~~AEip~VAT~~~~RgqG~gr~L~~aIE~~L~~-lgV~~LvLpA~~---eA~~~ 1039 (1088)
.|.+++..++++||.+.|..... ..+||- +++.++|||||||+.++.++.+.+.. +|+.+|++...+ -+..+
T Consensus 77 ~~~i~~~~~~~~iG~i~l~~~~~~~~~~~eig-~~i~~~~~G~G~~~ea~~~ll~~~~~~l~l~~i~~~v~~~N~~S~~l 155 (194)
T PRK10809 77 YFALLDPDEKEIIGVANFSNVVRGSFHACYLG-YSLGQKWQGQGLMFEALQAAIRYMQRQQHMHRIMANYMPHNKRSGDL 155 (194)
T ss_pred EEEEEECCCCeEEEEEEEEeecCCCeeeEEEE-EEECHHHcCCCHHHHHHHHHHHHHHhcCCceEEEEEeeCCCHHHHHH
Confidence 45554445789999999876543 346665 56899999999999999999999875 899999987654 66788
Q ss_pred HHhccCcEEcCH
Q 001383 1040 WTNKFGFSMMTE 1051 (1088)
Q Consensus 1040 w~~kfGF~~i~~ 1051 (1088)
+.+ +||+..+.
T Consensus 156 ~ek-~Gf~~~g~ 166 (194)
T PRK10809 156 LAR-LGFEKEGY 166 (194)
T ss_pred HHH-CCCcEEee
Confidence 888 99997664
No 75
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PRK10151 ribosomal-protein-L7/L12-serine acetyltransferase; Provisional
Probab=97.37 E-value=0.0011 Score=67.56 Aligned_cols=80 Identities=11% Similarity=0.131 Sum_probs=63.7
Q ss_pred EEEeCCEEEEEEEEEEecC--ceEEEeeeeeccCcccCChhHHHHHHHHHHhh-hcCccEEEecCh---hhhHHHHHhcc
Q 001383 971 ILTVNQVVVSAGIFRIFGQ--ELAELPLVATSNDCQGQGYFQSLFCCIEKLLG-FLNVKTLVLPSA---SEAQAIWTNKF 1044 (1088)
Q Consensus 971 VL~~~~evVsaA~lri~g~--~~AEip~VAT~~~~RgqG~gr~L~~aIE~~L~-~lgV~~LvLpA~---~eA~~~w~~kf 1044 (1088)
++..++++||.+.++.... ..+++.. .+.++|||||||+.++.++.+.+. .+|+++|.+.+. ..+..+|.+ +
T Consensus 71 ~i~~~~~~iG~~~l~~~~~~~~~~~ig~-~i~~~~~g~G~~tea~~~l~~~~~~~~~~~ri~~~v~~~N~~S~~v~ek-~ 148 (179)
T PRK10151 71 MIFKEDELIGVLSFNRIEPLNKTAYIGY-WLDESHQGQGIISQALQALIHHYAQSGELRRFVIKCRVDNPASNQVALR-N 148 (179)
T ss_pred EEEECCEEEEEEEEEeeccCCCceEEEE-EEChhhcCCcHHHHHHHHHHHHHHhhCCccEEEEEEcCCCHHHHHHHHH-C
Confidence 3346899999999876543 5789875 689999999999999999988775 578999887644 346788877 9
Q ss_pred CcEEcCHH
Q 001383 1045 GFSMMTEE 1052 (1088)
Q Consensus 1045 GF~~i~~~ 1052 (1088)
||+..+..
T Consensus 149 Gf~~~g~~ 156 (179)
T PRK10151 149 GFTLEGCL 156 (179)
T ss_pred CCEEEeEe
Confidence 99987654
No 77
>PF13302 Acetyltransf_3: Acetyltransferase (GNAT) domain; PDB: 3TTH_C 3JUW_A 2ZXV_A 2Z0Z_A 2VI7_B 3EG7_F 1YRE_C 3IGR_B 3FBU_A 2FCK_A ....
Probab=97.34 E-value=0.0014 Score=63.09 Aligned_cols=80 Identities=14% Similarity=0.215 Sum_probs=62.0
Q ss_pred ceEEEEEEe--CCEEEEEEEEEEe--cCceEEEeeeeeccCcccCChhHHHHHHHHHHh-hhcCccEEEecChh---hhH
Q 001383 966 GMYCAILTV--NQVVVSAGIFRIF--GQELAELPLVATSNDCQGQGYFQSLFCCIEKLL-GFLNVKTLVLPSAS---EAQ 1037 (1088)
Q Consensus 966 GfY~~VL~~--~~evVsaA~lri~--g~~~AEip~VAT~~~~RgqG~gr~L~~aIE~~L-~~lgV~~LvLpA~~---eA~ 1037 (1088)
|+|.+++.. ++++||...++.. ....+||. +.+.++|||+|||+.++..+.+.+ ..+|+.+|.+...+ .+.
T Consensus 55 ~~~~~~i~~~~~~~~iG~i~~~~~~~~~~~~eig-~~i~~~~~g~G~~~~~~~~~~~~~~~~~~~~~i~a~~~~~N~~s~ 133 (142)
T PF13302_consen 55 GYYYFAIEDKDDGEIIGFIGLYNIDKNNNWAEIG-YWIGPDYRGKGYGTEALKLLLDWAFEELGLHRIIATVMADNEASR 133 (142)
T ss_dssp TEEEEEEEETTTTEEEEEEEEEEEETTTTEEEEE-EEEEGGGTTSSHHHHHHHHHHHHHHHTSTSSEEEEEEETT-HHHH
T ss_pred cceEEEEEeccCCceEEEeeeeecccCCCccccc-cchhHHHHhhhHHHHHHHHHHHHHHhcCCcEEEEEEECcCCHHHH
Confidence 355555554 3589999999544 46899999 779999999999999999999999 79999999876553 445
Q ss_pred HHHHhccCcE
Q 001383 1038 AIWTNKFGFS 1047 (1088)
Q Consensus 1038 ~~w~~kfGF~ 1047 (1088)
.++.+ +||+
T Consensus 134 ~~~~k-~GF~ 142 (142)
T PF13302_consen 134 RLLEK-LGFE 142 (142)
T ss_dssp HHHHH-TT-E
T ss_pred HHHHH-cCCC
Confidence 66666 9995
No 78
>COG1247 Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]
Probab=97.33 E-value=0.0013 Score=68.90 Aligned_cols=116 Identities=16% Similarity=0.145 Sum_probs=85.6
Q ss_pred CCCcceeceEEEEEEeC-CEEEEEEEEEEecC-----ceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEec-
Q 001383 959 HRGQDYHGMYCAILTVN-QVVVSAGIFRIFGQ-----ELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLP- 1031 (1088)
Q Consensus 959 ~~rl~f~GfY~~VL~~~-~evVsaA~lri~g~-----~~AEip~VAT~~~~RgqG~gr~L~~aIE~~L~~lgV~~LvLp- 1031 (1088)
|....=.||+.+|++.+ |+++|-|.+-.|.. .++|. .|=+++++||+|+|++|+.++...+..+|++.++-.
T Consensus 44 ~~~~~~~g~p~~V~~~~~g~v~G~a~~~~fr~r~ay~~tve~-SiYv~~~~~g~GiG~~Ll~~Li~~~~~~g~~~lva~I 122 (169)
T COG1247 44 FSGRTRDGYPVVVAEEEDGKVLGYASAGPFRERPAYRHTVEL-SIYLDPAARGKGLGKKLLQALITEARALGVRELVAGI 122 (169)
T ss_pred HHhcccCCceEEEEEcCCCeEEEEEEeeeccCccccceEEEE-EEEECcccccccHHHHHHHHHHHHHHhCCeEEEEEEE
Confidence 44444457999998766 99999999887763 35555 567899999999999999999999999999887642
Q ss_pred -ChhhhHHHHHhccCcEEcCHHHHHhhhcccCeeeeCCceeeeccCCCC
Q 001383 1032 -SASEAQAIWTNKFGFSMMTEEEQNKYRNDYPLMIFQGTSMLQKPVPKC 1079 (1088)
Q Consensus 1032 -A~~eA~~~w~~kfGF~~i~~~el~~~~~~~~ll~F~GT~mLqK~l~~~ 1079 (1088)
+...|.--...+|||...+....-- ...-.+-.+.++|+.|...
T Consensus 123 ~~~n~aSi~lh~~~GF~~~G~~~~vg----~k~g~wld~~~~~~~l~~~ 167 (169)
T COG1247 123 ESDNLASIALHEKLGFEEVGTFPEVG----DKFGRWLDLVLMQLLLEEG 167 (169)
T ss_pred cCCCcHhHHHHHHCCCEEeccccccc----cccceEEeeeeeehhhccc
Confidence 3333555566669999998743321 2224566777888887543
No 79
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=97.28 E-value=8.2e-05 Score=86.48 Aligned_cols=124 Identities=29% Similarity=0.633 Sum_probs=75.2
Q ss_pred ccccccc-----cCCceEecCCCCCccccccCCCC---CCCC-------CCccccccccccc-ccceeeccc--------
Q 001383 718 DLCGICM-----DGGDLLCCDSCPRAFHIDCVSLP---GIPS-------GTWHCRYCMNTFQ-KEKFVEYNA-------- 773 (1088)
Q Consensus 718 d~C~VC~-----dgGeLl~CD~C~rafH~~Cl~~~---~vP~-------G~W~C~~C~~~~~-Kek~v~~~~-------- 773 (1088)
.+|.||. +.|+++-||.|+...|..|++.. ++|. ..|||.-|+..+. +......+.
T Consensus 120 ~iCcVClg~rs~da~ei~qCd~CGi~VHEgCYGv~dn~si~s~~s~~stepWfCeaC~~Gvs~P~CElCPn~~GifKetD 199 (707)
T KOG0957|consen 120 VICCVCLGQRSVDAGEILQCDKCGINVHEGCYGVLDNVSIPSGSSDCSTEPWFCEACLYGVSLPHCELCPNRFGIFKETD 199 (707)
T ss_pred eEEEEeecCccccccceeeccccCceecccccccccccccCCCCccCCCCchhhhhHhcCCCCCccccCCCcCCcccccc
Confidence 4899997 45899999999999999999854 3443 4699999986533 111111111
Q ss_pred -----cccccccccccccccccchheeeeccCCCC---CCCcceeccCCCCCCCCCCCcceeecC--CCCCcCCCCCCCC
Q 001383 774 -----NARAAGRIEGVDPFAQMVSRCIRIVQTPDT---ELGGCVLCRGRDFCKSRFGRRTVILCD--QCEREYHVGCLKD 843 (1088)
Q Consensus 774 -----na~aagrveGvdpieqi~~rciRivk~~d~---e~~~C~vCk~~d~sksgf~~g~LL~CD--qC~raYHv~CL~p 843 (1088)
.++.+--+.|+. +.++...|--.+.+++. ....|..|...-|.. -+..+.|| .|..+||+.|...
T Consensus 200 igrWvH~iCALYvpGVa-fg~~~~l~~Vtl~em~ysk~Gak~Cs~Ced~~fAR----tGvci~CdaGMCk~YfHVTCAQk 274 (707)
T KOG0957|consen 200 IGRWVHAICALYVPGVA-FGQTHTLCGVTLEEMDYSKFGAKTCSACEDKIFAR----TGVCIRCDAGMCKEYFHVTCAQK 274 (707)
T ss_pred hhhHHHHHHHhhcCccc-cccccccccccHHHhhhhhhccchhccccchhhhh----cceeeeccchhhhhhhhhhHHhh
Confidence 011011111221 12222222111222221 124699999877765 45789999 7999999999988
Q ss_pred CCC
Q 001383 844 HGM 846 (1088)
Q Consensus 844 ~g~ 846 (1088)
.|+
T Consensus 275 ~Gl 277 (707)
T KOG0957|consen 275 LGL 277 (707)
T ss_pred hcc
Confidence 764
No 80
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=97.24 E-value=0.00012 Score=81.61 Aligned_cols=44 Identities=36% Similarity=0.907 Sum_probs=38.4
Q ss_pred ccccc-cccCCceEecCC--CC-CccccccCCCCCCCCCCcccccccc
Q 001383 718 DLCGI-CMDGGDLLCCDS--CP-RAFHIDCVSLPGIPSGTWHCRYCMN 761 (1088)
Q Consensus 718 d~C~V-C~dgGeLl~CD~--C~-rafH~~Cl~~~~vP~G~W~C~~C~~ 761 (1088)
-+|.. |...|+|+-||. |+ ..||+.|+|+...|.|.|||+.|+.
T Consensus 220 ~yC~Cnqvsyg~Mi~CDn~~C~~eWFH~~CVGL~~~PkgkWyC~~C~~ 267 (274)
T KOG1973|consen 220 TYCICNQVSYGKMIGCDNPGCPIEWFHFTCVGLKTKPKGKWYCPRCKA 267 (274)
T ss_pred EEEEecccccccccccCCCCCCcceEEEeccccccCCCCcccchhhhh
Confidence 34543 456899999998 99 9999999999999999999999985
No 81
>KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=97.21 E-value=0.00065 Score=70.71 Aligned_cols=86 Identities=13% Similarity=0.158 Sum_probs=67.2
Q ss_pred EEEEEeC--CEEEEEEEEEEec-C-ceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhcc
Q 001383 969 CAILTVN--QVVVSAGIFRIFG-Q-ELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSASEAQAIWTNKF 1044 (1088)
Q Consensus 969 ~~VL~~~--~evVsaA~lri~g-~-~~AEip~VAT~~~~RgqG~gr~L~~aIE~~L~~lgV~~LvLpA~~eA~~~w~~kf 1044 (1088)
+.+|... .+|||-++|--.- . ..--+-.|-|...+||||+|+.||...|.+++..|++.+.|.+..| ..||++ +
T Consensus 57 sL~Ll~E~~~~VigH~rLS~i~n~~~al~VEsVVV~k~~RG~GFGk~lMk~~E~~~R~~gf~~~yLsT~DQ-~~FYe~-l 134 (225)
T KOG3397|consen 57 SLLLLNEENDEVLGHSRLSHLPNRDHALWVESVVVKKDQRGLGFGKFLMKSTEKWMREKGFNEAYLSTDDQ-CRFYES-L 134 (225)
T ss_pred eeeeecccccceeeeeccccCCCCCceeEEEEEEEehhhccccHHHHHHHHHHHHHHHhhhhheeeecccc-hhhhhh-h
Confidence 4444433 5777777664333 2 4556788999999999999999999999999999999999988755 679999 9
Q ss_pred CcEEcCHHHHHh
Q 001383 1045 GFSMMTEEEQNK 1056 (1088)
Q Consensus 1045 GF~~i~~~el~~ 1056 (1088)
||+.-+.-+..-
T Consensus 135 GYe~c~Pi~~~~ 146 (225)
T KOG3397|consen 135 GYEKCDPIVHST 146 (225)
T ss_pred cccccCceeccc
Confidence 999877654333
No 82
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=97.12 E-value=0.00022 Score=77.74 Aligned_cols=45 Identities=40% Similarity=1.117 Sum_probs=37.0
Q ss_pred CcceeccCCCCCCCCCCCcceeecC--CCCC-cCCCCCCCCCCCCCcccCCCCCcccCCCchh
Q 001383 806 GGCVLCRGRDFCKSRFGRRTVILCD--QCER-EYHVGCLKDHGMEDLQELPKGKWLCCADCKR 865 (1088)
Q Consensus 806 ~~C~vCk~~d~sksgf~~g~LL~CD--qC~r-aYHv~CL~p~g~~~LkEiP~g~WfCp~~C~~ 865 (1088)
.+| +|.+..| +.|+-|| .|.+ |||+.|+. |++.|+|.||| .+|+.
T Consensus 222 lYC-fCqqvSy-------GqMVaCDn~nCkrEWFH~~CVG------Lk~pPKG~WYC-~eCk~ 269 (271)
T COG5034 222 LYC-FCQQVSY-------GQMVACDNANCKREWFHLECVG------LKEPPKGKWYC-PECKK 269 (271)
T ss_pred eEE-Eeccccc-------ccceecCCCCCchhheeccccc------cCCCCCCcEeC-HHhHh
Confidence 456 6887654 5699999 7985 78999997 88999999999 58975
No 83
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.03 E-value=0.00027 Score=85.71 Aligned_cols=45 Identities=33% Similarity=0.821 Sum_probs=38.4
Q ss_pred cccccccccC---CceEecCCCCCc-cccccCCCC--CCCCCCcccccccc
Q 001383 717 DDLCGICMDG---GDLLCCDSCPRA-FHIDCVSLP--GIPSGTWHCRYCMN 761 (1088)
Q Consensus 717 dd~C~VC~dg---GeLl~CD~C~ra-fH~~Cl~~~--~vP~G~W~C~~C~~ 761 (1088)
.-.|.+|.-. .-||+||.|+.+ ||.+||+++ .+|-+.|||+.|.-
T Consensus 215 ~~~C~IC~~~DpEdVLLLCDsCN~~~YH~YCLDPdl~eiP~~eWYC~NC~d 265 (1134)
T KOG0825|consen 215 EVKCDICTVHDPEDVLLLCDSCNKVYYHVYCLDPDLSESPVNEWYCTNCSL 265 (1134)
T ss_pred cccceeeccCChHHhheeecccccceeeccccCcccccccccceecCcchh
Confidence 3469999854 368999999999 999999976 58999999999963
No 84
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=96.94 E-value=0.0004 Score=75.74 Aligned_cols=46 Identities=35% Similarity=0.938 Sum_probs=39.3
Q ss_pred cccccccccccC--CceEecCC--CC-CccccccCCCCCCCCCCcccccccc
Q 001383 715 ENDDLCGICMDG--GDLLCCDS--CP-RAFHIDCVSLPGIPSGTWHCRYCMN 761 (1088)
Q Consensus 715 ~ndd~C~VC~dg--GeLl~CD~--C~-rafH~~Cl~~~~vP~G~W~C~~C~~ 761 (1088)
++.-+|. |.+. |+|+-||+ |. ..||+.|+++...|.|.|||+.|+.
T Consensus 219 ~e~lYCf-CqqvSyGqMVaCDn~nCkrEWFH~~CVGLk~pPKG~WYC~eCk~ 269 (271)
T COG5034 219 GEELYCF-CQQVSYGQMVACDNANCKREWFHLECVGLKEPPKGKWYCPECKK 269 (271)
T ss_pred CceeEEE-ecccccccceecCCCCCchhheeccccccCCCCCCcEeCHHhHh
Confidence 4455776 8764 89999997 87 5899999999999999999999974
No 85
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=96.78 E-value=0.00051 Score=76.62 Aligned_cols=35 Identities=43% Similarity=1.017 Sum_probs=30.5
Q ss_pred cceeecCC--CC-CcCCCCCCCCCCCCCcccCCCCCcccCCCchh
Q 001383 824 RTVILCDQ--CE-REYHVGCLKDHGMEDLQELPKGKWLCCADCKR 865 (1088)
Q Consensus 824 g~LL~CDq--C~-raYHv~CL~p~g~~~LkEiP~g~WfCp~~C~~ 865 (1088)
+.|+-||. |+ .|||..|+. |..-|.|+|||| .|..
T Consensus 230 g~Mi~CDn~~C~~eWFH~~CVG------L~~~PkgkWyC~-~C~~ 267 (274)
T KOG1973|consen 230 GKMIGCDNPGCPIEWFHFTCVG------LKTKPKGKWYCP-RCKA 267 (274)
T ss_pred ccccccCCCCCCcceEEEeccc------cccCCCCcccch-hhhh
Confidence 67999997 99 999999997 778899999998 5653
No 86
>KOG3216 consensus Diamine acetyltransferase [Amino acid transport and metabolism]
Probab=96.76 E-value=0.0089 Score=61.55 Aligned_cols=121 Identities=16% Similarity=0.150 Sum_probs=86.7
Q ss_pred hHHHHHHHHhhhhccCcccccCcCCCccccccccccCCCcceeceEEEEEEe-CCEEEEEEEEEEe-----cCceEEEee
Q 001383 923 RALLSKAVSIFHDRFDPIIESASKLDLIPAMVYGRSHRGQDYHGMYCAILTV-NQVVVSAGIFRIF-----GQELAELPL 996 (1088)
Q Consensus 923 ~~~LavAl~If~EcFdPIiD~~Sg~DLIp~MVYg~~~~rl~f~GfY~~VL~~-~~evVsaA~lri~-----g~~~AEip~ 996 (1088)
+..|=.-++.|.++-+|..- |..+|-.+- |..-.|.-.+.+.++. ++++||-|.+..+ +.+.--|-=
T Consensus 17 i~rLikela~Fek~~~~v~~--te~~l~~~~-----F~d~~~~~~~v~~ie~~~~~~aGf~~yf~~ystW~~k~~iYleD 89 (163)
T KOG3216|consen 17 ILRLIKELAEFEKLEDQVEA--TEENLARDG-----FIDPPFKHWLVAAIETSGEVVAGFALYFNNYSTWLGKQGIYLED 89 (163)
T ss_pred HHHHHHHHHHHHHhccchhh--chhhhhhhh-----ccCCCccEEEEEEEecCCCceeEEeeeecccccccccceEEEEe
Confidence 33444555667766666542 333333222 3333455556666665 7899999987654 345667888
Q ss_pred eeeccCcccCChhHHHHHHHHHHhhhcCccEE---EecChhhhHHHHHhccCcEEcCH
Q 001383 997 VATSNDCQGQGYFQSLFCCIEKLLGFLNVKTL---VLPSASEAQAIWTNKFGFSMMTE 1051 (1088)
Q Consensus 997 VAT~~~~RgqG~gr~L~~aIE~~L~~lgV~~L---vLpA~~eA~~~w~~kfGF~~i~~ 1051 (1088)
+=|+++|||+|+|+.|+..+-+.+..+|..++ ++.--.-|+.+|++ .|++..+.
T Consensus 90 lyV~e~yR~kG~Gs~Ll~~va~~A~~~G~~rv~w~vldwN~rAi~lY~k-~gaq~l~~ 146 (163)
T KOG3216|consen 90 LYVREQYRGKGIGSKLLKFVAEEADKLGTPRVEWVVLDWNHRAILLYEK-VGAQDLKE 146 (163)
T ss_pred eEecchhcccChHHHHHHHHHHHHHHcCCCcEEEEEeccchhHHHHHHH-hCccccce
Confidence 89999999999999999999999999999875 55666789999999 99987665
No 87
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=96.56 E-value=0.0005 Score=54.64 Aligned_cols=34 Identities=38% Similarity=0.988 Sum_probs=20.8
Q ss_pred CceEecCCCCCccccccCCCCCCCCC-Cccccccc
Q 001383 727 GDLLCCDSCPRAFHIDCVSLPGIPSG-TWHCRYCM 760 (1088)
Q Consensus 727 GeLl~CD~C~rafH~~Cl~~~~vP~G-~W~C~~C~ 760 (1088)
..|+.|+.|.-++|..|+++..+|.+ .|+|..|+
T Consensus 2 n~ll~C~~C~v~VH~~CYGv~~~~~~~~W~C~~C~ 36 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCYGVSEVPDGDDWLCDRCE 36 (36)
T ss_dssp CEEEE-SSS--EEEHHHHT-SS--SS-----HHH-
T ss_pred CceEEeCCCCCcCChhhCCcccCCCCCcEECCcCC
Confidence 46899999999999999999988877 89999884
No 88
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=96.37 E-value=0.0012 Score=77.14 Aligned_cols=47 Identities=36% Similarity=0.976 Sum_probs=38.6
Q ss_pred CcceeccCCCCCCCCCCCcceeecCCCCCcCCCCCCCCCCCCCcccCCCC----CcccCCCc
Q 001383 806 GGCVLCRGRDFCKSRFGRRTVILCDQCEREYHVGCLKDHGMEDLQELPKG----KWLCCADC 863 (1088)
Q Consensus 806 ~~C~vCk~~d~sksgf~~g~LL~CDqC~raYHv~CL~p~g~~~LkEiP~g----~WfCp~~C 863 (1088)
-.|.+|++. .+...+++||.|...||++||.| ||..+|+. .|.| ..|
T Consensus 545 ysCgiCkks------~dQHll~~CDtC~lhYHlGCL~P----PLTR~Pkk~kn~gWqC-sEC 595 (707)
T KOG0957|consen 545 YSCGICKKS------TDQHLLTQCDTCHLHYHLGCLSP----PLTRLPKKNKNFGWQC-SEC 595 (707)
T ss_pred eeeeeeccc------hhhHHHhhcchhhceeeccccCC----ccccCcccccCcceee-ccc
Confidence 469999984 34567899999999999999994 67777764 5999 588
No 89
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=96.26 E-value=0.014 Score=65.42 Aligned_cols=80 Identities=24% Similarity=0.317 Sum_probs=69.7
Q ss_pred eEEEEEEeCCEEEEEEEEEEecCceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccCc
Q 001383 967 MYCAILTVNQVVVSAGIFRIFGQELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSASEAQAIWTNKFGF 1046 (1088)
Q Consensus 967 fY~~VL~~~~evVsaA~lri~g~~~AEip~VAT~~~~RgqG~gr~L~~aIE~~L~~lgV~~LvLpA~~eA~~~w~~kfGF 1046 (1088)
.+|++...++++|+|+++ +|.- |.-|||++.+||-|+.-.|+..+-.++-++|.-.||+-+-++-..++.. +||
T Consensus 37 ~~v~~~~~~~~iiacGsi--aGnv---ikcvAvs~s~qGeGl~lkl~TeLin~ay~~g~~hLFiyTKp~~~~lFk~-~GF 110 (352)
T COG3053 37 YFVAIYRDNEEIIACGSI--AGNV---IKCVAVSESLQGEGLALKLVTELINLAYERGRTHLFIYTKPEYAALFKQ-CGF 110 (352)
T ss_pred EEEEEEcCCCcEEEeccc--ccce---eEEEEechhcccccHHHHHHHHHHHHHHHcCCceEEEEechhHHHHHHh-CCc
Confidence 344444455999999994 5643 8999999999999999999999999999999999999999999999999 999
Q ss_pred EEcCHH
Q 001383 1047 SMMTEE 1052 (1088)
Q Consensus 1047 ~~i~~~ 1052 (1088)
..+...
T Consensus 111 ~~i~~~ 116 (352)
T COG3053 111 SEIASA 116 (352)
T ss_pred eEeecc
Confidence 998773
No 90
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=96.26 E-value=0.0076 Score=57.07 Aligned_cols=75 Identities=19% Similarity=0.236 Sum_probs=56.9
Q ss_pred EEEeCCEEEEEEEEEEecCceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccE-EEec-ChhhhHHHHHhccCcEE
Q 001383 971 ILTVNQVVVSAGIFRIFGQELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKT-LVLP-SASEAQAIWTNKFGFSM 1048 (1088)
Q Consensus 971 VL~~~~evVsaA~lri~g~~~AEip~VAT~~~~RgqG~gr~L~~aIE~~L~~lgV~~-LvLp-A~~eA~~~w~~kfGF~~ 1048 (1088)
||--+|.+||=.. -+..+||+--.|.|+|||||+.+.++....+.|..+|+.- ..+. +-...+.+-.+ +||..
T Consensus 3 llgpeG~PVSW~l----mdqtge~rmgyTlPeyR~~G~~~~v~~~~~~~L~~~g~P~Y~hv~~~N~~~~r~~~~-lg~~~ 77 (89)
T PF08444_consen 3 LLGPEGNPVSWSL----MDQTGEMRMGYTLPEYRGQGLMSQVMYHLAQYLHKLGFPFYGHVDEDNEASQRLSKS-LGFIF 77 (89)
T ss_pred ccCCCCCEeEEEE----ecccccccccccCHhHhcCCHHHHHHHHHHHHHHHCCCCeEeehHhccHHHHHHHHH-CCCee
Confidence 3455688888655 4578999999999999999999999999999999999983 3322 22333444444 88887
Q ss_pred cC
Q 001383 1049 MT 1050 (1088)
Q Consensus 1049 i~ 1050 (1088)
++
T Consensus 78 ~p 79 (89)
T PF08444_consen 78 MP 79 (89)
T ss_pred cC
Confidence 65
No 91
>PF12746 GNAT_acetyltran: GNAT acetyltransferase; PDB: 3G3S_B.
Probab=96.11 E-value=0.032 Score=62.36 Aligned_cols=76 Identities=13% Similarity=0.013 Sum_probs=55.3
Q ss_pred EeCCEEEEEEEEEEecCceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccCcEEcC
Q 001383 973 TVNQVVVSAGIFRIFGQELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSASEAQAIWTNKFGFSMMT 1050 (1088)
Q Consensus 973 ~~~~evVsaA~lri~g~~~AEip~VAT~~~~RgqG~gr~L~~aIE~~L~~lgV~~LvLpA~~eA~~~w~~kfGF~~i~ 1050 (1088)
..+++|||.|.-.....+.+||- |+|.++|||||+++++..++......-|+--.|=- ...+-----.||||+...
T Consensus 171 ~~~~~iVs~~~s~~~~~~~~EI~-I~T~~~yR~kGLA~~~aa~~I~~Cl~~~l~P~WDc-~N~~S~~lA~kLGf~~~~ 246 (265)
T PF12746_consen 171 LHDGEIVSGCSSYFVYENGIEID-IETHPEYRGKGLATAVAAAFILECLENGLYPSWDC-HNLASIALAEKLGFHFDF 246 (265)
T ss_dssp EETTEEEEEEEEEEEETTEEEEE-EEE-CCCTTSSHHHHHHHHHHHHHHHTT-EEE-EE-SSHHHHHHHHHCT--EEE
T ss_pred EECCEEEEEEEEEEEECCEEEEE-EEECHHhhcCCHHHHHHHHHHHHHHHCCCCcCeeC-CCHHHHHHHHHcCCcccc
Confidence 56899999887777777889995 79999999999999999999999999998777743 333333333469998643
No 92
>PF12568 DUF3749: Acetyltransferase (GNAT) domain; InterPro: IPR024612 This domain is found in uncharacterised proteins from Gammaproteobacteria, and is approximately 40 amino acids in length. It contains two completely conserved residues (D and I) that may be functionally important. Proteins having this domain are frequently annotated as acetyltransferases of the GNAT family; however there is little accompanying annotation to confirm this.; PDB: 2K5T_A.
Probab=96.10 E-value=0.037 Score=55.63 Aligned_cols=82 Identities=23% Similarity=0.277 Sum_probs=58.7
Q ss_pred eceEEEEEEeCCEEEEEEEEEEecCceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecCh------hhhHH
Q 001383 965 HGMYCAILTVNQVVVSAGIFRIFGQELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSA------SEAQA 1038 (1088)
Q Consensus 965 ~GfY~~VL~~~~evVsaA~lri~g~~~AEip~VAT~~~~RgqG~gr~L~~aIE~~L~~lgV~~LvLpA~------~eA~~ 1038 (1088)
.-+|++ .-|+.++||+.+.+.|. -|+|--+.|++.=||.|.|..|++.+.+.+. +|...++.+. ..+..
T Consensus 38 ~~l~aA--rFNdRlLgAv~v~~~~~-~~~L~~l~VRevTRrRGVG~yLlee~~rq~p--~i~~w~l~~~~~~~~~~~~~~ 112 (128)
T PF12568_consen 38 HRLFAA--RFNDRLLGAVKVTISGQ-QAELSDLCVREVTRRRGVGLYLLEEVLRQLP--DIKHWWLADEGVEPQDRAVMA 112 (128)
T ss_dssp EEEEEE--EETTEEEEEEEEEEETT-EEEEEEEEE-TT-SSSSHHHHHHHHHHHHS---S--EEEE--TT-S--THHHHH
T ss_pred CeEEEE--EechheeeeEEEEEcCc-ceEEeeEEEeeccccccHHHHHHHHHHHHCC--CCcEEEEecCCCcccchHHHH
Confidence 446666 89999999999999874 7999999999999999999999999999994 5555555433 23444
Q ss_pred HHHhccCcEEcCH
Q 001383 1039 IWTNKFGFSMMTE 1051 (1088)
Q Consensus 1039 ~w~~kfGF~~i~~ 1051 (1088)
.+...+||...++
T Consensus 113 ~Fm~a~GF~~~~~ 125 (128)
T PF12568_consen 113 AFMQACGFSAQSD 125 (128)
T ss_dssp HHHHHHT-EE-SS
T ss_pred HHHHHcCccccCC
Confidence 5555599987653
No 93
>KOG4144 consensus Arylalkylamine N-acetyltransferase [General function prediction only]
Probab=95.96 E-value=0.0066 Score=62.53 Aligned_cols=61 Identities=16% Similarity=0.167 Sum_probs=51.7
Q ss_pred ceEEEeeeeeccCcccCChhHHHHHH-HHHHhhhcCccEEEecChhhhHHHHHhccCcEEcCH
Q 001383 990 ELAELPLVATSNDCQGQGYFQSLFCC-IEKLLGFLNVKTLVLPSASEAQAIWTNKFGFSMMTE 1051 (1088)
Q Consensus 990 ~~AEip~VAT~~~~RgqG~gr~L~~a-IE~~L~~lgV~~LvLpA~~eA~~~w~~kfGF~~i~~ 1051 (1088)
.-+.|-.+|+.++||.||++..|+.. |..+-..-=+++.+|=+-.-.+|||++ |||+.+++
T Consensus 100 ~ni~iHsl~Ihpa~rk~g~a~~Ll~~ylq~l~~q~i~~r~~Li~h~pLvPFYEr-~gFk~vgp 161 (190)
T KOG4144|consen 100 HNIHIHSLAIHPAFRKQGRAPILLWRYLQHLGSQPIVRRAALICHDPLVPFYER-FGFKAVGP 161 (190)
T ss_pred cceeEEEEEecHHHHhcCcchhHHHHHHHHhhcCccccceeeeecCCccchhHh-cCceeecc
Confidence 34788899999999999999999887 444444455678899898999999999 99999998
No 94
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=95.93 E-value=0.0046 Score=79.20 Aligned_cols=56 Identities=25% Similarity=0.695 Sum_probs=44.0
Q ss_pred CCCcceeccCCCCCCCCCCCcceeecCCCCCcCCCCCCCCCCCCCcccCCCCCcccCCCchhhHHHH
Q 001383 804 ELGGCVLCRGRDFCKSRFGRRTVILCDQCEREYHVGCLKDHGMEDLQELPKGKWLCCADCKRINLAL 870 (1088)
Q Consensus 804 e~~~C~vCk~~d~sksgf~~g~LL~CDqC~raYHv~CL~p~g~~~LkEiP~g~WfCp~~C~~I~~kL 870 (1088)
....|.+|.+++. ++.+.+++||.|..++|++|.. .+-+|+|.|+| ..|-.-....
T Consensus 218 ~D~~C~iC~~~~~----~n~n~ivfCD~Cnl~VHq~Cyg------i~~ipeg~WlC-r~Cl~s~~~~ 273 (1051)
T KOG0955|consen 218 EDAVCCICLDGEC----QNSNVIVFCDGCNLAVHQECYG------IPFIPEGQWLC-RRCLQSPQRP 273 (1051)
T ss_pred CCccceeeccccc----CCCceEEEcCCCcchhhhhccC------CCCCCCCcEee-hhhccCcCcc
Confidence 3468999999763 3357899999999999999997 34578999999 7786544433
No 95
>COG0454 WecD Histone acetyltransferase HPA2 and related acetyltransferases [Transcription / General function prediction only]
Probab=95.85 E-value=0.01 Score=50.43 Aligned_cols=44 Identities=14% Similarity=0.157 Sum_probs=39.4
Q ss_pred eeeccCcccCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccCc
Q 001383 997 VATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSASEAQAIWTNKFGF 1046 (1088)
Q Consensus 997 VAT~~~~RgqG~gr~L~~aIE~~L~~lgV~~LvLpA~~eA~~~w~~kfGF 1046 (1088)
++|+++|||+|+|+.|+..+++.+...|+. ....+..+|.. +||
T Consensus 87 l~v~~~~rg~Gig~~Ll~~~~~~~~~~g~~-----~~~~~~~~~~~-~~~ 130 (156)
T COG0454 87 LYVLPEYRGKGIGSALLEAALEWARKRGIS-----LNRLALEVYEK-NGF 130 (156)
T ss_pred EEecchhhccchHHHHHHHHHHHHHHcCce-----ehHHHHHHHHh-cCC
Confidence 999999999999999999999999998887 55566788888 888
No 96
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=95.77 E-value=0.005 Score=63.11 Aligned_cols=26 Identities=38% Similarity=1.095 Sum_probs=22.7
Q ss_pred cCCCCCCCCCCCCCcccCCCCCcccCCCchh
Q 001383 835 EYHVGCLKDHGMEDLQELPKGKWLCCADCKR 865 (1088)
Q Consensus 835 aYHv~CL~p~g~~~LkEiP~g~WfCp~~C~~ 865 (1088)
+||+.||+ |||.++|+|+|+|| .|..
T Consensus 1 g~H~~CL~----Ppl~~~P~g~W~Cp-~C~~ 26 (148)
T cd04718 1 GFHLCCLR----PPLKEVPEGDWICP-FCEV 26 (148)
T ss_pred CcccccCC----CCCCCCCCCCcCCC-CCcC
Confidence 59999999 57999999999997 6764
No 97
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=95.67 E-value=0.014 Score=72.90 Aligned_cols=59 Identities=15% Similarity=0.121 Sum_probs=50.1
Q ss_pred EEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEe--cChhhhHHHHHhccCcEEcCHH
Q 001383 992 AELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVL--PSASEAQAIWTNKFGFSMMTEE 1052 (1088)
Q Consensus 992 AEip~VAT~~~~RgqG~gr~L~~aIE~~L~~lgV~~LvL--pA~~eA~~~w~~kfGF~~i~~~ 1052 (1088)
|.|=+|||+|++|++|||++|+..+.+.++ .|+..|-. -+.++...||.+ .||.++-=+
T Consensus 532 ~RIvRIAvhPe~q~~GiGsrlL~~l~~~a~-~~~DwlgvsFG~t~~L~rFW~r-nGF~pVhls 592 (758)
T COG1444 532 WRIVRIAVHPELQRMGIGSRLLALLIEEAR-KGLDWLGVSFGYTEELLRFWLR-NGFVPVHLS 592 (758)
T ss_pred eeEEEEEeCHHHHhcCHHHHHHHHHHHHHh-cCCCEEeeccCCCHHHHHHHHH-cCeEEEEec
Confidence 677899999999999999999999999986 45555544 478899999999 999988543
No 98
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=95.63 E-value=0.047 Score=50.15 Aligned_cols=57 Identities=12% Similarity=0.084 Sum_probs=49.2
Q ss_pred EEEeCCEEEEEEEEEEecCceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEE
Q 001383 971 ILTVNQVVVSAGIFRIFGQELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTL 1028 (1088)
Q Consensus 971 VL~~~~evVsaA~lri~g~~~AEip~VAT~~~~RgqG~gr~L~~aIE~~L~~lgV~~L 1028 (1088)
.+..+|+.+|...++. ..++..|--.-|.+++||||+++.||.++.+.++.-|.+-+
T Consensus 3 ~~~~~g~~~a~l~Y~~-~~~~~~i~hT~V~~~~rGqGia~~L~~~~l~~a~~~~~kv~ 59 (78)
T PF14542_consen 3 ELKDDGEEIAELTYRE-DGGVIVITHTEVPPELRGQGIAKKLVEAALDYARENGLKVV 59 (78)
T ss_dssp EEESSTTEEEEEEEEE-SSSEEEEEEEEE-CSSSTTTHHHHHHHHHHHHHHHTT-EEE
T ss_pred EEEECCEEEEEEEEEe-CCCEEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCEEE
Confidence 4577788999999977 77899999999999999999999999999999999997643
No 99
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=95.60 E-value=0.0069 Score=73.36 Aligned_cols=50 Identities=28% Similarity=0.986 Sum_probs=42.6
Q ss_pred CCcceeccCCCCCCCCCCCcceeecC--CCCCcCCCCCCCCCCCCCcccCCCCCcccCCCchh
Q 001383 805 LGGCVLCRGRDFCKSRFGRRTVILCD--QCEREYHVGCLKDHGMEDLQELPKGKWLCCADCKR 865 (1088)
Q Consensus 805 ~~~C~vCk~~d~sksgf~~g~LL~CD--qC~raYHv~CL~p~g~~~LkEiP~g~WfCp~~C~~ 865 (1088)
+++|.+|.+-. +..++-|+.|| .|.-+.|..|.. +.++|.|.||| ..|..
T Consensus 5 VGGCCVCSDEr----GWaeNPLVYCDG~nCsVAVHQaCYG------IvqVPtGpWfC-rKCes 56 (900)
T KOG0956|consen 5 VGGCCVCSDER----GWAENPLVYCDGHNCSVAVHQACYG------IVQVPTGPWFC-RKCES 56 (900)
T ss_pred ccceeeecCcC----CCccCceeeecCCCceeeeehhcce------eEecCCCchhh-hhhhh
Confidence 47899998632 55678899999 799999999986 67899999999 78875
No 100
>COG1670 RimL Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]
Probab=95.52 E-value=0.074 Score=52.92 Aligned_cols=89 Identities=16% Similarity=0.218 Sum_probs=67.7
Q ss_pred eceEEEEEEeCC--EEEEEEEEEEec----CceEEEeeeeeccCcccCChhHHHHHHHHHHhhh-cCccEEEecChhh--
Q 001383 965 HGMYCAILTVNQ--VVVSAGIFRIFG----QELAELPLVATSNDCQGQGYFQSLFCCIEKLLGF-LNVKTLVLPSASE-- 1035 (1088)
Q Consensus 965 ~GfY~~VL~~~~--evVsaA~lri~g----~~~AEip~VAT~~~~RgqG~gr~L~~aIE~~L~~-lgV~~LvLpA~~e-- 1035 (1088)
.+.|.+++..++ ++||...+..+. .+.+++-..- .+.|+||||+...+.++.+.+-. +++.+|++-..+.
T Consensus 64 ~~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~ig~~l-~~~~~g~G~~tea~~~~l~~~f~~~~l~ri~~~~~~~N~ 142 (187)
T COG1670 64 GGAFAIELKATGDGELIGVIGLSDIDRAANGDLAEIGYWL-DPEYWGKGYATEALRALLDYAFEELGLHRIEATVDPENE 142 (187)
T ss_pred CceEEEEEEeCCCCeEEEEEEEEEeccccccceEEEEEEE-ChHHhcCchHHHHHHHHHHHhhhhcCceEEEEEecCCCH
Confidence 355666666544 999999998665 5688887666 99999999999999999988666 9999998865543
Q ss_pred -hHHHHHhccCcEEcCHHHHH
Q 001383 1036 -AQAIWTNKFGFSMMTEEEQN 1055 (1088)
Q Consensus 1036 -A~~~w~~kfGF~~i~~~el~ 1055 (1088)
+...+.+ +||+..+.....
T Consensus 143 ~S~rv~ek-~Gf~~eg~~~~~ 162 (187)
T COG1670 143 ASIRVYEK-LGFRLEGELRQH 162 (187)
T ss_pred HHHHHHHH-cCChhhhhhhhc
Confidence 3455666 999987765443
No 101
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=95.49 E-value=0.049 Score=52.66 Aligned_cols=66 Identities=21% Similarity=0.241 Sum_probs=57.9
Q ss_pred eceEEEEEEeCCEEEEEEEEEEecCceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecChh
Q 001383 965 HGMYCAILTVNQVVVSAGIFRIFGQELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSAS 1034 (1088)
Q Consensus 965 ~GfY~~VL~~~~evVsaA~lri~g~~~AEip~VAT~~~~RgqG~gr~L~~aIE~~L~~lgV~~LvLpA~~ 1034 (1088)
.++|++ ..+|+.++.++....|.+..-|+---|..++||||+++.|+....+.+++-|.+ ++|.-+
T Consensus 15 ~~~y~~--~~~G~~~~e~~y~~~~~~~i~i~HT~V~d~lrGqGia~~L~~~al~~ar~~g~k--iiP~Cs 80 (99)
T COG2388 15 NGRYVL--TDEGEVIGEATYYDRGENLIIIDHTYVPDELRGQGIAQKLVEKALEEAREAGLK--IIPLCS 80 (99)
T ss_pred ceEEEE--ecCCcEEEEEEEecCCCCEEEEecCcCCHHHcCCcHHHHHHHHHHHHHHHcCCe--Ecccch
Confidence 467775 899999999999888989999999999999999999999999999999999975 344443
No 102
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=95.47 E-value=0.0073 Score=61.93 Aligned_cols=25 Identities=36% Similarity=1.107 Sum_probs=22.2
Q ss_pred ccccccCCCC--CCCCCCccccccccc
Q 001383 738 AFHIDCVSLP--GIPSGTWHCRYCMNT 762 (1088)
Q Consensus 738 afH~~Cl~~~--~vP~G~W~C~~C~~~ 762 (1088)
+||+.||.|| .+|+|+|+|+.|...
T Consensus 1 g~H~~CL~Ppl~~~P~g~W~Cp~C~~~ 27 (148)
T cd04718 1 GFHLCCLRPPLKEVPEGDWICPFCEVE 27 (148)
T ss_pred CcccccCCCCCCCCCCCCcCCCCCcCC
Confidence 5999999866 899999999999864
No 103
>KOG2488 consensus Acetyltransferase (GNAT) domain-containing protein [General function prediction only]
Probab=95.25 E-value=0.049 Score=58.04 Aligned_cols=84 Identities=19% Similarity=0.250 Sum_probs=63.9
Q ss_pred eEEEEEEeCCEEEEEEEEEEec---CceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEe---cChhhhHHHH
Q 001383 967 MYCAILTVNQVVVSAGIFRIFG---QELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVL---PSASEAQAIW 1040 (1088)
Q Consensus 967 fY~~VL~~~~evVsaA~lri~g---~~~AEip~VAT~~~~RgqG~gr~L~~aIE~~L~~lgV~~LvL---pA~~eA~~~w 1040 (1088)
-|.+.+...+.+||-+.+|.-- ..++=.-=|=+.+.|||+|+|+.|++.+|.++...+.+.++| ..-.-|.+||
T Consensus 93 ~Yi~a~~~~~~~vgf~~Frf~vd~g~~vlYcyEvqv~~~yR~kGiGk~LL~~l~~~a~~~~~~kVmLTVf~~N~~al~Fy 172 (202)
T KOG2488|consen 93 RYICAWNNKSKLVGFTMFRFTVDTGDPVLYCYEVQVASAYRGKGIGKFLLDTLEKLADSRHMRKVMLTVFSENIRALGFY 172 (202)
T ss_pred eEEEEEcCCCceeeEEEEEEEcccCCeEEEEEEEeehhhhhccChHHHHHHHHHHHHHHHHhhhheeeeecccchhHHHH
Confidence 4555555556899999988643 234444445567789999999999999999999998887665 4556789999
Q ss_pred HhccCcEEcCH
Q 001383 1041 TNKFGFSMMTE 1051 (1088)
Q Consensus 1041 ~~kfGF~~i~~ 1051 (1088)
.+ +||-+...
T Consensus 173 ~~-~gf~~~~~ 182 (202)
T KOG2488|consen 173 HR-LGFVVDEE 182 (202)
T ss_pred HH-cCcccCCC
Confidence 99 99987654
No 104
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=94.76 E-value=0.0077 Score=79.72 Aligned_cols=56 Identities=29% Similarity=0.809 Sum_probs=46.5
Q ss_pred CCCCCcceeccCCCCCCCCCCCcceeecCCCCCcCCCCCCCCCCCCCcccCCCCCcccCCCchhhHH
Q 001383 802 DTELGGCVLCRGRDFCKSRFGRRTVILCDQCEREYHVGCLKDHGMEDLQELPKGKWLCCADCKRINL 868 (1088)
Q Consensus 802 d~e~~~C~vCk~~d~sksgf~~g~LL~CDqC~raYHv~CL~p~g~~~LkEiP~g~WfCp~~C~~I~~ 868 (1088)
......|.+|+.. +....|+.|+.|..+||..|+++ .+..+|.+.|||| .|..-+.
T Consensus 1105 s~~~~~c~~cr~k------~~~~~m~lc~~c~~~~h~~C~rp----~~~~~~~~dW~C~-~c~~e~~ 1160 (1404)
T KOG1245|consen 1105 SAVNALCKVCRRK------KQDEKMLLCDECLSGFHLFCLRP----ALSSVPPGDWMCP-SCRKEHR 1160 (1404)
T ss_pred ccchhhhhhhhhc------ccchhhhhhHhhhhhHHHHhhhh----hhccCCcCCccCC-ccchhhh
Confidence 3455789999984 34568999999999999999994 6889999999996 7887665
No 105
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=94.68 E-value=0.012 Score=69.72 Aligned_cols=43 Identities=33% Similarity=0.846 Sum_probs=35.9
Q ss_pred ccccccC-----CceEecCCCCCccccccCCCC------CCCCCCccccccccc
Q 001383 720 CGICMDG-----GDLLCCDSCPRAFHIDCVSLP------GIPSGTWHCRYCMNT 762 (1088)
Q Consensus 720 C~VC~dg-----GeLl~CD~C~rafH~~Cl~~~------~vP~G~W~C~~C~~~ 762 (1088)
|.+|..+ ..||.|++|...||+.|+.+. .-+...|+|..|...
T Consensus 171 c~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~ 224 (464)
T KOG4323|consen 171 CSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRG 224 (464)
T ss_pred eeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccc
Confidence 8888754 389999999999999999755 346788999999864
No 106
>COG4552 Eis Predicted acetyltransferase involved in intracellular survival and related acetyltransferases [General function prediction only]
Probab=94.45 E-value=0.051 Score=62.47 Aligned_cols=84 Identities=18% Similarity=0.218 Sum_probs=66.4
Q ss_pred CcceeceEEEEEEeCCEEEEEEEEEEe------cC---ceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEec
Q 001383 961 GQDYHGMYCAILTVNQVVVSAGIFRIF------GQ---ELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLP 1031 (1088)
Q Consensus 961 rl~f~GfY~~VL~~~~evVsaA~lri~------g~---~~AEip~VAT~~~~RgqG~gr~L~~aIE~~L~~lgV~~LvLp 1031 (1088)
.+++.++|++ +.+.++++ .|++. |. ..|-|-.||+.|+|||+|+-|+|+....+..++-|+.-.+|-
T Consensus 35 il~~~n~~vi--~~nqkl~s--~L~i~~f~~~f~~q~l~t~GIa~Vas~P~~R~~G~~~~Ll~~sLre~~~kG~p~s~L~ 110 (389)
T COG4552 35 ILAEPNSYVI--YMNQKLAS--RLHIPPFIFWFGNQVLPTAGIAGVASAPTYRRRGALRALLAHSLREIARKGYPVSALH 110 (389)
T ss_pred hccCCcceEE--eehhhhhh--cccccchheeeCCeeeeccceEEEEechhhccCcHHHHHHHHHHHHHHHcCCeeEEec
Confidence 3566677765 77788754 44443 33 356778999999999999999999999999999999988885
Q ss_pred ChhhhHHHHHhccCcEEcCH
Q 001383 1032 SASEAQAIWTNKFGFSMMTE 1051 (1088)
Q Consensus 1032 A~~eA~~~w~~kfGF~~i~~ 1051 (1088)
+. ..+||.+ |||..-+.
T Consensus 111 P~--s~~iYrK-fGye~asn 127 (389)
T COG4552 111 PF--SGGIYRK-FGYEYASN 127 (389)
T ss_pred cC--chhhHhh-ccccccce
Confidence 54 3679998 99987665
No 107
>KOG3138 consensus Predicted N-acetyltransferase [General function prediction only]
Probab=94.30 E-value=0.038 Score=58.88 Aligned_cols=61 Identities=11% Similarity=0.156 Sum_probs=51.2
Q ss_pred eEEEeeeeeccCcccCChhHHHHHHHHHHhhhcC-ccEEEecCh---hhhHHHHHhccCcEEcCHH
Q 001383 991 LAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLN-VKTLVLPSA---SEAQAIWTNKFGFSMMTEE 1052 (1088)
Q Consensus 991 ~AEip~VAT~~~~RgqG~gr~L~~aIE~~L~~lg-V~~LvLpA~---~eA~~~w~~kfGF~~i~~~ 1052 (1088)
+.-|-.++|.+.||..|+|+.|++.+.+.+...+ .+++.|-++ ..|..||++ +||+.+...
T Consensus 89 ~~yi~~Lgvl~~yR~~gIGs~Ll~~~~~~~~~~~~~~~v~lHv~~~n~~ai~~Y~~-~gF~~~~~~ 153 (187)
T KOG3138|consen 89 VIYILSLGVLPRYRNKGIGSKLLEFVKKYCSEAHQCRRVYLHVQAVNESAIEFYEK-RGFEIVERL 153 (187)
T ss_pred eeEEEeecccHHHHhcchHHHHHHHHHHHHhcccccceEEEEEEeCCCcHHHHHHh-cCceEeecc
Confidence 5778999999999999999999999999999998 676666543 466777777 999988764
No 108
>smart00258 SAND SAND domain.
Probab=94.03 E-value=0.055 Score=49.67 Aligned_cols=50 Identities=28% Similarity=0.411 Sum_probs=40.3
Q ss_pred eCCeEEeccCCCCCCeeeChhhHhhhcCCCCCCCC-CceeccCCCcHHHHHHH
Q 001383 442 KGSGISCFCDDCKGNQVVTPAVFELHAGSSNKRPP-EYIYLENGKTLRDIMNV 493 (1088)
Q Consensus 442 ~~~GIlC~C~~C~~~~vvs~s~FE~HAGs~~rrp~-~~IyLeNG~SL~dvl~a 493 (1088)
...|+.+-|-.|.+ +-+||++||.|||...-.-+ ..|. -||.+|+.+|++
T Consensus 19 f~~G~~~kCI~~~~-~~~TP~eFe~~~g~~~~K~WK~sIR-~~g~~Lr~L~~~ 69 (73)
T smart00258 19 FKCGISVKCIQYED-KWFTPKEFEIEGGKGKSKDWKRSIR-CGGSSLRTLMEN 69 (73)
T ss_pred hhcCcccCCccCCC-EEEChHHHHhhcCCcccCCcchhee-ECCccHHHHHHc
Confidence 45699999999887 89999999999997544445 6665 479999999875
No 109
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=93.24 E-value=0.036 Score=65.36 Aligned_cols=47 Identities=34% Similarity=0.837 Sum_probs=37.5
Q ss_pred CcceeccCCCCCCCCCCCcceeecCCCCCcCCCCCCCCCCCCCcccCCCCCcccCCCc
Q 001383 806 GGCVLCRGRDFCKSRFGRRTVILCDQCEREYHVGCLKDHGMEDLQELPKGKWLCCADC 863 (1088)
Q Consensus 806 ~~C~vCk~~d~sksgf~~g~LL~CDqC~raYHv~CL~p~g~~~LkEiP~g~WfCp~~C 863 (1088)
+.|.+|...+.. +.++++.||.|+-+.|..|.. ..-+|+|.|+| +.|
T Consensus 194 ~~C~~c~~t~~e----N~naiVfCdgC~i~VHq~CYG------I~f~peG~WlC-rkC 240 (669)
T COG5141 194 DICTKCTSTHNE----NSNAIVFCDGCEICVHQSCYG------IQFLPEGFWLC-RKC 240 (669)
T ss_pred hhhHhccccccC----CcceEEEecCcchhhhhhccc------ceecCcchhhh-hhh
Confidence 468888876532 357899999999999999986 45679999999 445
No 110
>PF13480 Acetyltransf_6: Acetyltransferase (GNAT) domain
Probab=93.10 E-value=0.63 Score=44.68 Aligned_cols=66 Identities=6% Similarity=-0.175 Sum_probs=57.5
Q ss_pred eEEEEEEeCCEEEEEEEEEEecCceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecCh
Q 001383 967 MYCAILTVNQVVVSAGIFRIFGQELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSA 1033 (1088)
Q Consensus 967 fY~~VL~~~~evVsaA~lri~g~~~AEip~VAT~~~~RgqG~gr~L~~aIE~~L~~lgV~~LvLpA~ 1033 (1088)
...++++.+|++||++.....+ +.+..-..+++++|++.+.|..|+..+.+.+.+.|++.+-+...
T Consensus 71 ~~l~~~~~~g~~va~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~l~~~~i~~a~~~g~~~~d~g~g 136 (142)
T PF13480_consen 71 LRLFVLYDGGEPVAFALGFRHG-GTLYYWYGGYDPEYRKYSPGRLLLWEAIRWAIERGLRYFDFGGG 136 (142)
T ss_pred EEEEEEEECCEEEEEEEEEEEC-CEEEEEEEEECHhhHhCCHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 4566778899999999876655 68889999999999999999999999999999999999887553
No 111
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=93.08 E-value=0.039 Score=67.70 Aligned_cols=52 Identities=33% Similarity=0.739 Sum_probs=43.1
Q ss_pred CCCcceeccCCCCCCCCCCCcceeecCCCCCcCCCCCCCCCCCCCcccCCCCCcccCCCchhh
Q 001383 804 ELGGCVLCRGRDFCKSRFGRRTVILCDQCEREYHVGCLKDHGMEDLQELPKGKWLCCADCKRI 866 (1088)
Q Consensus 804 e~~~C~vCk~~d~sksgf~~g~LL~CDqC~raYHv~CL~p~g~~~LkEiP~g~WfCp~~C~~I 866 (1088)
+.-.|.+|..+|. ...+.|++||.|.-..|..|.. +.++|.+.|.| ..|...
T Consensus 270 edviCDvCrspD~----e~~neMVfCd~Cn~cVHqaCyG------Ile~p~gpWlC-r~Calg 321 (893)
T KOG0954|consen 270 EDVICDVCRSPDS----EEANEMVFCDKCNICVHQACYG------ILEVPEGPWLC-RTCALG 321 (893)
T ss_pred ccceeceecCCCc----cccceeEEeccchhHHHHhhhc------eeecCCCCeee-hhcccc
Confidence 3456999998763 3467899999999999999987 77899999999 678754
No 112
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=93.05 E-value=0.022 Score=75.66 Aligned_cols=50 Identities=30% Similarity=0.859 Sum_probs=41.6
Q ss_pred ccccccccccccCC---ceEecCCCCCccccccCCC--CCCCCCCcccccccccc
Q 001383 714 KENDDLCGICMDGG---DLLCCDSCPRAFHIDCVSL--PGIPSGTWHCRYCMNTF 763 (1088)
Q Consensus 714 ~~ndd~C~VC~dgG---eLl~CD~C~rafH~~Cl~~--~~vP~G~W~C~~C~~~~ 763 (1088)
......|.+|.-.+ .++.|+.|..+||..|+.+ ..+|.|+|+|+.|+...
T Consensus 1105 s~~~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~ 1159 (1404)
T KOG1245|consen 1105 SAVNALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKEH 1159 (1404)
T ss_pred ccchhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchhh
Confidence 34556899998543 7899999999999999974 48999999999998653
No 113
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=92.98 E-value=0.058 Score=51.93 Aligned_cols=33 Identities=24% Similarity=0.732 Sum_probs=28.2
Q ss_pred CcceeccCCCCCCCCCCCcceeecCC--CCCcCCCCCCCCCCC
Q 001383 806 GGCVLCRGRDFCKSRFGRRTVILCDQ--CEREYHVGCLKDHGM 846 (1088)
Q Consensus 806 ~~C~vCk~~d~sksgf~~g~LL~CDq--C~raYHv~CL~p~g~ 846 (1088)
..|.+|+.. .+.++.|.. |.++||+.|+...+.
T Consensus 56 ~~C~iC~~~--------~G~~i~C~~~~C~~~fH~~CA~~~g~ 90 (110)
T PF13832_consen 56 LKCSICGKS--------GGACIKCSHPGCSTAFHPTCARKAGL 90 (110)
T ss_pred CcCcCCCCC--------CceeEEcCCCCCCcCCCHHHHHHCCC
Confidence 469999984 467999998 999999999988764
No 114
>PF06852 DUF1248: Protein of unknown function (DUF1248); InterPro: IPR009658 This entry represents a conserved region within a number of proteins of unknown function that seem to be specific to Caenorhabditis elegans. Note that some proteins in the entry contain more than one copy of this region.
Probab=92.79 E-value=0.58 Score=49.87 Aligned_cols=82 Identities=17% Similarity=0.206 Sum_probs=60.5
Q ss_pred EEEEEEeCCEEEEEEEEEEec-------CceEEEeeeeeccCcccCChhHHHHHHHH-HHhhhcCccEEEecChhhhHHH
Q 001383 968 YCAILTVNQVVVSAGIFRIFG-------QELAELPLVATSNDCQGQGYFQSLFCCIE-KLLGFLNVKTLVLPSASEAQAI 1039 (1088)
Q Consensus 968 Y~~VL~~~~evVsaA~lri~g-------~~~AEip~VAT~~~~RgqG~gr~L~~aIE-~~L~~lgV~~LvLpA~~eA~~~ 1039 (1088)
|.+++.--+.+|+++.+-.+. ..+--+.+.-+.|+|||+|+++ |+..+. +.+..- =...++-+...+..+
T Consensus 48 ~~~~~KgT~~via~~~~~~~~~l~~~~d~pl~~~G~~w~~p~yRg~~~~k-l~~~~~~~~~~~~-~~N~~~~~~~~~~~~ 125 (181)
T PF06852_consen 48 VLTCLKGTDRVIATVHLIRFDPLNPSPDKPLQFIGFFWIDPEYRGKGIMK-LQDDICMDELDSV-DDNSVAQGNVKMSNF 125 (181)
T ss_pred EEEEEcCCCcEEEEEEEEEeccCCCCCCCCeEEEeeeeeCCcccCcchHH-HHHHHHHHHhccC-CCceeeecCHHHHHH
Confidence 444444446788888764432 2488999999999999999997 555554 455553 345667788899999
Q ss_pred HHhccCcEEcCH
Q 001383 1040 WTNKFGFSMMTE 1051 (1088)
Q Consensus 1040 w~~kfGF~~i~~ 1051 (1088)
|.+-|||..++.
T Consensus 126 w~k~~G~~~~~h 137 (181)
T PF06852_consen 126 WHKMFGFDDYGH 137 (181)
T ss_pred HHHHhCCCCCcc
Confidence 999999988887
No 115
>PF01342 SAND: SAND domain; InterPro: IPR000770 The SAND domain (named after Sp100, AIRE-1, NucP41/75, DEAF-1) is a conserved ~80 residue region found in a number of nuclear proteins, many of which function in chromatin-dependent transcriptional control. These include proteins linked to various human diseases, such as the Sp100 (Speckled protein 100 kDa), NUDR (Nuclear DEAF-1 related), GMEB (Glucocorticoid Modulatory Element Binding) proteins and AIRE-1 (Autoimmune regulator 1) proteins. Proteins containing the SAND domain have a modular structure; the SAND domain can be associated with a number of other modules, including the bromodomain, the PHD finger and the MYND finger. Because no SAND domain has been found in yeast, it is thought that the SAND domain could be restricted to animal phyla. Many SAND domain-containing proteins, including NUDR, DEAF-1 (Deformed epidermal autoregulatory factor-1) and GMEB, have been shown to bind DNA sequences specifically. The SAND domain has been proposed to mediate the DNA binding activity of these proteins [, ]. The resolution of the 3D structure of the SAND domain from Sp100b has revealed that it consists of a novel alpha/beta fold. The SAND domain adopts a compact fold consisting of a strongly twisted, five-stranded antiparallel beta-sheet with four alpha-helices packing against one side of the beta-sheet. The opposite side of the beta-sheet is solvent exposed. The beta-sheet and alpha-helical parts of the structure form two distinct regions. Multiple hydrophobic residues pack between these regions to form a structural core. A conserved KDWK sequence motif is found within the alpha-helical, positively charged surface patch. The DNA binding surface has been mapped to the alpha-helical region encompassing the KDWK motif [].; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 1OQJ_B 1UFN_A 1H5P_A.
Probab=92.68 E-value=0.029 Score=52.37 Aligned_cols=56 Identities=25% Similarity=0.482 Sum_probs=40.7
Q ss_pred ceeeEEe-----CCeEEeccCCCCCCeeeChhhHhhhcCCCCCCCC-CceeccCCCcHHHHHHH
Q 001383 436 GLRGVVK-----GSGISCFCDDCKGNQVVTPAVFELHAGSSNKRPP-EYIYLENGKTLRDIMNV 493 (1088)
Q Consensus 436 ~L~G~I~-----~~GIlC~C~~C~~~~vvs~s~FE~HAGs~~rrp~-~~IyLeNG~SL~dvl~a 493 (1088)
.+.|++. ..|+...|-.+. .+-+||.+||.|||..+-.-+ ..|.. +|.+|..+|+.
T Consensus 17 ~~~G~L~~~k~~~~g~~~kCI~~~-g~~~TP~eFE~~~G~~~sK~WK~SIr~-~g~~L~~li~~ 78 (82)
T PF01342_consen 17 DVKGTLYKKKFVKQGICGKCIQCE-GRWFTPSEFERHGGKGSSKDWKRSIRC-GGEPLGKLIEK 78 (82)
T ss_dssp TEEEEEEHHHH-TTGTTSS-EEET-TEEE-HHHHHHHHTTCTCS-HHHHSEE-TTEEHHHHHHT
T ss_pred CeEEEEEHHHhhcccccCceEeeC-CcEECHHHHHhhcCcccCCCCCccEEE-CCEEHHHHHhh
Confidence 3467764 455566676667 468999999999999666556 78888 99999998874
No 116
>TIGR03694 exosort_acyl putative PEP-CTERM/exosortase system-associated acyltransferase. Members of this protein family are restricted to bacterial species with the PEP-CTERM/exosortase system predicted to act in exopolysaccharide-associated protein targeting. PSI-BLAST and CDD reveal relationships to the acyltransferase family that includes N-acyl-L-homoserine lactone synthetase. Several members of this family may be found in a single genome. These proteins likely contribute to chemical modifications in exopolysaccharide and biofilm structural material production.
Probab=92.54 E-value=1 Score=49.64 Aligned_cols=123 Identities=14% Similarity=0.119 Sum_probs=82.5
Q ss_pred HHHHHHHHhhhhccCcccccCcCCCccccccccccCCCcceeceEEEEEEe-CCEEEEEEEEEEe---------------
Q 001383 924 ALLSKAVSIFHDRFDPIIESASKLDLIPAMVYGRSHRGQDYHGMYCAILTV-NQVVVSAGIFRIF--------------- 987 (1088)
Q Consensus 924 ~~LavAl~If~EcFdPIiD~~Sg~DLIp~MVYg~~~~rl~f~GfY~~VL~~-~~evVsaA~lri~--------------- 987 (1088)
..+..+..+=++.|-- .-|-++..+---+.++...|-..-|.++... +|++||+++|...
T Consensus 17 ~~~~~~~~lR~~VFv~----e~gw~~~~~~~~~~E~D~~D~~~~h~l~~~~~~g~vvG~~RLl~t~~~~p~~~~p~e~~~ 92 (241)
T TIGR03694 17 ELLEEAFRLRYQVYCE----ELGFEPPSDYPDGLETDEYDAHSVHSLLRHRRTGTFVGCVRLVLPNSSDPDQPFPFEKHC 92 (241)
T ss_pred HHHHHHHHHHHHHHHH----hcCCCCCCCCCCCCcCCCCCCCCcEEEEEECCCCCEEEEEEEeccccccccccccHHHHh
Confidence 4466677776777721 1122221110013344445544556555543 5899999999642
Q ss_pred ---------------cCceEEEeeeeeccCcccC--------C--------------------hhHHHHHHHHHHhhhcC
Q 001383 988 ---------------GQELAELPLVATSNDCQGQ--------G--------------------YFQSLFCCIEKLLGFLN 1024 (1088)
Q Consensus 988 ---------------g~~~AEip~VAT~~~~Rgq--------G--------------------~gr~L~~aIE~~L~~lg 1024 (1088)
...++|+-++|+.++||+. | +...|+.++-+.+...|
T Consensus 93 ~~~~~~~~~~~~~~~~~~i~E~SRf~V~~~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~a~~~G 172 (241)
T TIGR03694 93 SHSLDGLFLDPRRLPRSRIAEVSRLAVSKDFRRRKGEKLKPSGVGVIETEAPFSESERRRFPHIPLGLYLGLIALSSANG 172 (241)
T ss_pred ccccchhhcCccccCCCceEEeehheECHhHhCCcccccccccccccccccccchhhcccCchHHHHHHHHHHHHHHHCC
Confidence 1369999999999999974 2 44679999999999999
Q ss_pred ccEEEecChhhhHHHHHhccCcE--EcCH
Q 001383 1025 VKTLVLPSASEAQAIWTNKFGFS--MMTE 1051 (1088)
Q Consensus 1025 V~~LvLpA~~eA~~~w~~kfGF~--~i~~ 1051 (1088)
+++++.-+.+-...++.+ +||. .+++
T Consensus 173 i~~~~~v~~~~l~r~l~r-~G~~~~~lG~ 200 (241)
T TIGR03694 173 ITHWYAIMEPRLARLLSR-FGIQFRQVGP 200 (241)
T ss_pred CcEEEEEeCHHHHHHHHH-hCCceEEcCC
Confidence 999999888877887765 8864 4443
No 117
>KOG3235 consensus Subunit of the major N alpha-acetyltransferase [General function prediction only]
Probab=92.45 E-value=0.35 Score=50.50 Aligned_cols=81 Identities=15% Similarity=0.187 Sum_probs=62.8
Q ss_pred EEE-eCCEEEEEEEEEEec-----CceEEEeeeeeccCcccCChhHHHHHHHHHH-hhhcCccEEEecCh---hhhHHHH
Q 001383 971 ILT-VNQVVVSAGIFRIFG-----QELAELPLVATSNDCQGQGYFQSLFCCIEKL-LGFLNVKTLVLPSA---SEAQAIW 1040 (1088)
Q Consensus 971 VL~-~~~evVsaA~lri~g-----~~~AEip~VAT~~~~RgqG~gr~L~~aIE~~-L~~lgV~~LvLpA~---~eA~~~w 1040 (1088)
|.+ .+|.|||-.....+. ..-.+|-.+||...||+.|+++.||....+. +...+.+++-|.-+ ..|...|
T Consensus 45 VA~D~~gkiVGYvlAkmee~p~~~~~hGhItSlaV~rs~RrlGla~kLm~qa~rAm~E~~~A~yvsLHVR~SNraAl~LY 124 (193)
T KOG3235|consen 45 VAEDENGKIVGYVLAKMEEDPDDEPPHGHITSLAVKRSYRRLGLAQKLMNQASRAMVEVYEAKYVSLHVRKSNRAALHLY 124 (193)
T ss_pred EEEcCCCcEEEEeeeehhhcccCCCCCCeeEEeeehhhHHHhhHHHHHHHHHHHHHHHhhcceEEEEeeecccHHHHHhh
Confidence 345 668999988776654 2257899999999999999999999876544 44556777777644 4689999
Q ss_pred HhccCcEEcCH
Q 001383 1041 TNKFGFSMMTE 1051 (1088)
Q Consensus 1041 ~~kfGF~~i~~ 1051 (1088)
++.+||.+.+-
T Consensus 125 ~~tl~F~v~ev 135 (193)
T KOG3235|consen 125 KNTLGFVVCEV 135 (193)
T ss_pred hhccceEEeec
Confidence 99999998764
No 118
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=91.22 E-value=0.16 Score=60.22 Aligned_cols=51 Identities=16% Similarity=0.280 Sum_probs=44.8
Q ss_pred ccCcccCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccCcEEcCH
Q 001383 1000 SNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSASEAQAIWTNKFGFSMMTE 1051 (1088)
Q Consensus 1000 ~~~~RgqG~gr~L~~aIE~~L~~lgV~~LvLpA~~eA~~~w~~kfGF~~i~~ 1051 (1088)
...+|.||||+.||...|+.+++-+..++.+-+-..+...|.+ |||...++
T Consensus 459 ~~~~QH~G~G~~L~~~AE~ia~ee~~~ki~viSgiG~ReYy~k-~GY~~~gp 509 (515)
T COG1243 459 EDEWQHRGYGRELLEEAERIAREEGAKKILVISGIGVREYYRK-LGYELDGP 509 (515)
T ss_pred cchhhcccHHHHHHHHHHHHHHhhccccEEEEecccHHHHHHH-hCccccCC
Confidence 5789999999999999999999999998887777778888876 99987664
No 119
>KOG3234 consensus Acetyltransferase, (GNAT) family [General function prediction only]
Probab=90.85 E-value=0.3 Score=50.88 Aligned_cols=59 Identities=17% Similarity=0.189 Sum_probs=47.4
Q ss_pred ceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEec---ChhhhHHHHHhccCcEEc
Q 001383 990 ELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLP---SASEAQAIWTNKFGFSMM 1049 (1088)
Q Consensus 990 ~~AEip~VAT~~~~RgqG~gr~L~~aIE~~L~~lgV~~LvLp---A~~eA~~~w~~kfGF~~i 1049 (1088)
.-+++--|+|.|.||++|++..||+.+|+.....+.-.+.|- .-.-|+.+|++ |||.+.
T Consensus 68 wh~HvTAltVap~~Rrl~la~~lm~~led~~d~~~a~fvDLfVr~sN~iAI~mYkk-LGY~~Y 129 (173)
T KOG3234|consen 68 WHGHVTALTVAPDYRRLGLAAKLMDTLEDVSDVDNAYFVDLFVRVSNQIAIDMYKK-LGYSVY 129 (173)
T ss_pred eeeEEEEEEechhHHHHHHHHHHHHHHHHHHHhhhhheeeeeeeccchhHHHHHHh-cCceEE
Confidence 347788899999999999999999999999877755444443 34578999999 999753
No 120
>PF00765 Autoind_synth: Autoinducer synthetase; InterPro: IPR001690 Bacterial species have many methods of controlling gene expression and cell growth. Regulation of gene expression in response to changes in cell density is termed quorum sensing [, ]. Quorum-sensing bacteria produce, release and respond to hormone-like molecules (autoinducers) that accumulate in the external environment as the cell population grows. Once a threshold of these molecules is reached, a signal transduction cascade is triggered that ultimately leads to behavioural changes in the bacterium []. Autoinducers are thus clearly important mediators of molecular communication. Conjugal transfer of Agrobacterium octopine-type Ti plasmids is activated by octopine, a metabolite released from plant tumours []. Octopine causes conjugal donors to secrete a pheromone, Agrobacterium autoinducer (AAI), and exogenous AAI further stimulates conjugation. The putative AAI synthase and an AAI-responsive transcriptional regulator have been found to be encoded by the Ti plasmid traI and traR genes, respectively. TraR and TraI are similar to the LuxR and LuxI regulatory proteins of Vibrio fischeri, and AAI is similar in structure to the diffusable V. fischeri autoinducer, the inducing ligand of LuxR. TraR activates target genes in the presence of AAI and also activates traR and traI themselves, creating two positive-feedback loops. TraR-AAI-mediated activation in wild-type Agrobacterium strains is enhanced by culturing on solid media, suggesting a possible role in cell density sensing []. Production of light by the marine bacterium V. fischeri and by recombinant hosts containing cloned lux genes is controlled by the density of the culture []. Density-dependent regulation of lux gene expression has been shown to require a locus consisting of the luxR and luxI genes. In these and other Gram-negative bacteria, N-(3-oxohexanoyl)-L-homoserine lactone (OHHL) acts as the autoinducer by binding to transcriptional regulatory proteins and activating them []. OHHL and related molecules, such as N-butanoyl- (BHL), N-hexanoyl- (HHL) and N-oxododecanoyl- (PAI) homoserine lactones, are produced by a family of proteins that share a high level of sequence similarity. Proteins which currently members of this family include: luxI from V. fischeri. ahyI and asaI from Aeromonas species, which synthesize BHL and whose targets are ahyR and asaR respectively. carI from Erwinia carotovora. The target of OHHL is carR which activates genes involved in the biosynthesis of carbapenem antibiotics. eagI from Enterobacter agglomerans. The target of OHHL is not yet known. esaI from Erwinia stewartii. expI from Erwinia carotovora. lasI from Pseudomonas aeruginosa, which synthesizes PAI and whose target is lasR which activates the transcription of the elastase gene. rhlI (or vsmI) from P. aeruginosa, which synthesizes BHL and HHL and whose target is rhlR. swrI from Serratia liquefaciens, which synthesizes BHL. yenI from Yersinia enterocolitica. ; GO: 0007165 signal transduction; PDB: 3P2H_A 3P2F_A 1KZF_A 1K4J_A 1RO5_A.
Probab=88.85 E-value=2.3 Score=45.22 Aligned_cols=91 Identities=14% Similarity=0.113 Sum_probs=65.8
Q ss_pred cccCCCcc-eeceEEEEEEeCCEEEEEEEEEEec---------------------CceEEEeeeeeccCccc------CC
Q 001383 956 GRSHRGQD-YHGMYCAILTVNQVVVSAGIFRIFG---------------------QELAELPLVATSNDCQG------QG 1007 (1088)
Q Consensus 956 g~~~~rl~-f~GfY~~VL~~~~evVsaA~lri~g---------------------~~~AEip~VAT~~~~Rg------qG 1007 (1088)
|.++...| ..-.|.+++. +|+++|+++|.... .+++|+=++++.++.++ .-
T Consensus 34 g~E~DqyD~~~~~ylv~~~-~g~v~g~~RLlptt~p~ML~~~F~~ll~~~~~p~~~~vwE~SRf~v~~~~~~~~~~~~~~ 112 (182)
T PF00765_consen 34 GMEIDQYDDPDAVYLVALD-DGRVVGCARLLPTTGPYMLSDVFPHLLPDGPAPRSPDVWELSRFCVDPDRRRSRAGSRSP 112 (182)
T ss_dssp SEE--TTGCTT-EEEEEEE-TTEEEEEEEEEETTS--HHHHCTGGGHTTS---SSTTEEEEEEEEE-HCCCHHCHSCC-T
T ss_pred CcEeeecCCCCCeEEEEEE-CCEEEEEeeeccCCCcchhhhHHHHHhCCCCCCCCCcceeeeEEEEcccccccccccccH
Confidence 33333343 2346777665 59999999987542 57999999999988542 23
Q ss_pred hhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccCcEE
Q 001383 1008 YFQSLFCCIEKLLGFLNVKTLVLPSASEAQAIWTNKFGFSM 1048 (1088)
Q Consensus 1008 ~gr~L~~aIE~~L~~lgV~~LvLpA~~eA~~~w~~kfGF~~ 1048 (1088)
+...|+.++-+.+.+.|+++++.-+..-...++.+ +||..
T Consensus 113 ~~~~L~~~~~e~a~~~gi~~~v~V~~~~~~r~l~r-~G~~~ 152 (182)
T PF00765_consen 113 VTMELLLGMVEFALSNGIRHIVGVVDPAMERILRR-AGWPV 152 (182)
T ss_dssp HHHHHHHHHHHHHHCTT-SEEEEEEEHHHHHHHHH-CT-EE
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEEChHHHHHHHH-cCCce
Confidence 67899999999999999999998888777888887 99875
No 121
>PRK13834 putative autoinducer synthesis protein; Provisional
Probab=88.16 E-value=2.7 Score=45.48 Aligned_cols=117 Identities=15% Similarity=0.114 Sum_probs=77.7
Q ss_pred HHHHHHHhhhhccCcccccCcCCCccccccccccCCCcce-eceEEEEEEeCCEEEEEEEEEEe----------------
Q 001383 925 LLSKAVSIFHDRFDPIIESASKLDLIPAMVYGRSHRGQDY-HGMYCAILTVNQVVVSAGIFRIF---------------- 987 (1088)
Q Consensus 925 ~LavAl~If~EcFdPIiD~~Sg~DLIp~MVYg~~~~rl~f-~GfY~~VL~~~~evVsaA~lri~---------------- 987 (1088)
.+..+..+=|+.|-- .-|-++ |. .-|.++...|- .-.|.+.+..+|++||+++|-..
T Consensus 17 ~l~~~~rLR~~VF~~----elgW~~-~~-~~g~E~D~yD~~~~~yll~~~~~g~vvG~~RLlptt~p~ml~~~fp~l~~~ 90 (207)
T PRK13834 17 LLKQMHRLRARVFGG----RLGWDV-SI-TDGEERDQFDDLKPTYILAISDSGRVAGCARLLPAIGPTMLAQVFPQLLPA 90 (207)
T ss_pred HHHHHHHHHHHHhcc----ccCCCC-CC-CCCcCccCCCCCCCEEEEEEeCCCeEEEEEecccCCCcchhhhhcHHhcCC
Confidence 456666666677731 112232 11 11333444443 34566666678899999987321
Q ss_pred -----cCceEEEeeeeeccCcc---cCC----hhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccCcEE
Q 001383 988 -----GQELAELPLVATSNDCQ---GQG----YFQSLFCCIEKLLGFLNVKTLVLPSASEAQAIWTNKFGFSM 1048 (1088)
Q Consensus 988 -----g~~~AEip~VAT~~~~R---gqG----~gr~L~~aIE~~L~~lgV~~LvLpA~~eA~~~w~~kfGF~~ 1048 (1088)
..+++|+-++|++++++ +.+ +...|+.++-+.+...|+++++.-..+-...++.+ +||..
T Consensus 91 ~~~~~~~~v~E~SRf~V~~~~~~~~~~~~~~~~~~~L~~~~~~~a~~~Gi~~~~~v~~~~~~r~l~r-~G~~~ 162 (207)
T PRK13834 91 GRLNAHPAMIESSRFCVDTALAEGRGGGQLHEATLTMFAGIIEWSMANGYTEIVTATDLRFERILAR-AGWPM 162 (207)
T ss_pred CCCCCCCCEEEEeeeEEcccccccccccccCHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHH-cCCCe
Confidence 25699999999999863 222 55789999999999999999987777667777755 88653
No 122
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=84.32 E-value=1.9 Score=45.75 Aligned_cols=66 Identities=12% Similarity=0.097 Sum_probs=52.3
Q ss_pred eEEEEEEeCCEEEEEEEEEEecCc-----eEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecChh
Q 001383 967 MYCAILTVNQVVVSAGIFRIFGQE-----LAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSAS 1034 (1088)
Q Consensus 967 fY~~VL~~~~evVsaA~lri~g~~-----~AEip~VAT~~~~RgqG~gr~L~~aIE~~L~~lgV~~LvLpA~~ 1034 (1088)
.|-+|-+ ++++||.-.||-.=.+ ..+| --+|+|+.||+||++.++.-..+.++.||++.+.+-+..
T Consensus 70 ~y~~v~~-d~~ivG~i~lRh~Ln~~ll~~gGHI-GY~VrPseR~KGYA~emLkl~L~~ar~lgi~~Vlvtcd~ 140 (174)
T COG3981 70 TYWAVDE-DGQIVGFINLRHQLNDFLLEEGGHI-GYSVRPSERRKGYAKEMLKLALEKARELGIKKVLVTCDK 140 (174)
T ss_pred eEEEEec-CCcEEEEEEeeeecchHHHhcCCcc-cceeChhhhccCHHHHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 4555545 8999999999865322 1222 246999999999999999999999999999999887664
No 123
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=84.27 E-value=0.22 Score=39.75 Aligned_cols=30 Identities=37% Similarity=1.119 Sum_probs=16.0
Q ss_pred cceeecCCCCCcCCCCCCCCCCCCCcccCCCC-Cccc
Q 001383 824 RTVILCDQCEREYHVGCLKDHGMEDLQELPKG-KWLC 859 (1088)
Q Consensus 824 g~LL~CDqC~raYHv~CL~p~g~~~LkEiP~g-~WfC 859 (1088)
+.||.|+.|.-..|..|.. +...|.+ .|+|
T Consensus 2 n~ll~C~~C~v~VH~~CYG------v~~~~~~~~W~C 32 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCYG------VSEVPDGDDWLC 32 (36)
T ss_dssp CEEEE-SSS--EEEHHHHT-------SS--SS-----
T ss_pred CceEEeCCCCCcCChhhCC------cccCCCCCcEEC
Confidence 3599999999999999987 3344444 6999
No 124
>cd04264 DUF619-NAGS DUF619 domain of various N-acetylglutamate Synthases of the fungal arginine-biosynthetic pathway and urea cycle found in humans and fish. DUF619-NAGS: This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=82.58 E-value=2.7 Score=40.85 Aligned_cols=48 Identities=21% Similarity=0.244 Sum_probs=40.9
Q ss_pred EeCCEEEEEEEEEEec--CceEEEeeeeeccCcccCChhHHHHHHHHHHh
Q 001383 973 TVNQVVVSAGIFRIFG--QELAELPLVATSNDCQGQGYFQSLFCCIEKLL 1020 (1088)
Q Consensus 973 ~~~~evVsaA~lri~g--~~~AEip~VAT~~~~RgqG~gr~L~~aIE~~L 1020 (1088)
+.++...++|.+..-+ .+++-|-.+|+.+..||+|+++.|+.+|-+..
T Consensus 14 y~~e~y~~~aIvt~~~~~~~~~yLdKfaV~~~~~g~gvad~vf~~i~~d~ 63 (99)
T cd04264 14 YLSEGYNAAAIVTYEGVNNGVPYLDKFAVSSSAQGEGTSDALWRRLRRDF 63 (99)
T ss_pred EEeCCceEEEEEeccCCCCCceEEEEEEEchhhhhcChHHHHHHHHHhhC
Confidence 5566788888886644 58999999999999999999999999998763
No 125
>PF07897 DUF1675: Protein of unknown function (DUF1675); InterPro: IPR012463 The members of this family are sequences derived from hypothetical plant proteins of unknown function. One member of this family (Q9SFV5 from SWISSPROT) is annotated as a putative RNA-binding protein, but no evidence was found to support this.
Probab=81.32 E-value=3.5 Score=46.92 Aligned_cols=67 Identities=27% Similarity=0.469 Sum_probs=40.8
Q ss_pred hHHHHhhcCCCCCcEEEEEecCccCCCcccceeeEEeCC------eEEeccCCCCCCeeeChhhHhhhcCC-CCCCCCCc
Q 001383 406 KLKNFLESGILEGMSVMYIRGSKVKGPGVSGLRGVVKGS------GISCFCDDCKGNQVVTPAVFELHAGS-SNKRPPEY 478 (1088)
Q Consensus 406 ~vk~Ll~tGlLeG~~V~Y~~~~~~rg~g~~~L~G~I~~~------GIlC~C~~C~~~~vvs~s~FE~HAGs-~~rrp~~~ 478 (1088)
+...-..+.+++.+|-.+-.+. |+.-+...|+...- -|+|-|. | .-+||.+|=.|||. ..-||-.|
T Consensus 210 ~~~~~~~~~~~~~mp~v~t~g~---gpng~~i~g~ly~y~~~~~v~i~c~ch---g-~~~~~~efv~h~~~~~~~~p~~h 282 (284)
T PF07897_consen 210 NSGGDGSRNMMEDMPCVSTTGD---GPNGKRIEGFLYKYGKGEEVRIVCVCH---G-SFLSPAEFVKHAGGGDVANPLRH 282 (284)
T ss_pred cccccccccccccCCceeeccC---CCCCceeeEEEEEecCCCeEEEEEEec---C-CCCCHHHHHHhcCCCCcCCchhc
Confidence 3333333445566664443221 11113456666433 2788877 3 47999999999998 56688898
Q ss_pred e
Q 001383 479 I 479 (1088)
Q Consensus 479 I 479 (1088)
|
T Consensus 283 i 283 (284)
T PF07897_consen 283 I 283 (284)
T ss_pred c
Confidence 8
No 126
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=79.14 E-value=0.74 Score=43.61 Aligned_cols=47 Identities=34% Similarity=0.800 Sum_probs=31.2
Q ss_pred cccccccccc-----------CC---ceEecCCCCCccccccCC-CCCCCCCCcccccccccc
Q 001383 716 NDDLCGICMD-----------GG---DLLCCDSCPRAFHIDCVS-LPGIPSGTWHCRYCMNTF 763 (1088)
Q Consensus 716 ndd~C~VC~d-----------gG---eLl~CD~C~rafH~~Cl~-~~~vP~G~W~C~~C~~~~ 763 (1088)
+++.|.||+. +| .++.+ .|...||..|+- .-......-.||.|+..+
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g-~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w 81 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWG-KCSHNFHMHCILKWLSTQSSKGQCPMCRQPW 81 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeec-cCccHHHHHHHHHHHccccCCCCCCCcCCee
Confidence 4777888763 22 24444 499999999985 222233456999999754
No 127
>PF02474 NodA: Nodulation protein A (NodA); InterPro: IPR003484 Rhizobial nodulation (Nod) factors are signalling molecules secreted by root-nodulating rhizobia in response to flavanoids excreted by the host plant. They induce various symbiotic responses on the roots of the leguminous host plant at low concentrations, and are required for successful infection. Rhizobial Nod factors are lipo-chitooligosaccharides carrying various substituents which are important determinants of host specificity []. NodA is an N-acyl transferase which specifies the transfer of an acyl chain to the oligosaccharide backbone of Nod factor. Allelic variation of the nodA gene can contribute to the determination of host range [].; GO: 0016746 transferase activity, transferring acyl groups
Probab=77.81 E-value=3.3 Score=44.05 Aligned_cols=53 Identities=21% Similarity=0.125 Sum_probs=46.4
Q ss_pred eEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccC
Q 001383 991 LAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSASEAQAIWTNKFG 1045 (1088)
Q Consensus 991 ~AEip~VAT~~~~RgqG~gr~L~~aIE~~L~~lgV~~LvLpA~~eA~~~w~~kfG 1045 (1088)
+||+.+.||+++.+|.|+++.+ ..+--.|+.|||..-|---+......+++ |+
T Consensus 85 VaElGLygVRpDLEGlGi~hs~-r~m~PvLq~LgVPF~FGtVR~al~~Hv~R-~~ 137 (196)
T PF02474_consen 85 VAELGLYGVRPDLEGLGISHSM-RVMYPVLQELGVPFGFGTVRHALRNHVER-LC 137 (196)
T ss_pred EEEEEEEEeeccccccccchhh-hhhhhHHHhcCCCeecccchHHHHHHHHH-Hh
Confidence 8999999999999999999976 68889999999999887777777777777 54
No 128
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=77.73 E-value=0.84 Score=42.29 Aligned_cols=49 Identities=24% Similarity=0.511 Sum_probs=33.2
Q ss_pred CcceeccCCCCCCCCCCCcceeecC--CCCCcCCCCCCCCCCCCCccc--CCCCCcccCCC
Q 001383 806 GGCVLCRGRDFCKSRFGRRTVILCD--QCEREYHVGCLKDHGMEDLQE--LPKGKWLCCAD 862 (1088)
Q Consensus 806 ~~C~vCk~~d~sksgf~~g~LL~CD--qC~raYHv~CL~p~g~~~LkE--iP~g~WfCp~~ 862 (1088)
..|.+|++. .|..+.|. .|.+.||+.|....+...... ......||+.|
T Consensus 37 ~~C~~C~~~--------~Ga~i~C~~~~C~~~fH~~CA~~~~~~~~~~~~~~~~~~~C~~H 89 (90)
T PF13771_consen 37 LKCSICKKK--------GGACIGCSHPGCSRSFHVPCARKAGCFIEFDEDNGKFRIFCPKH 89 (90)
T ss_pred CCCcCCCCC--------CCeEEEEeCCCCCcEEChHHHccCCeEEEEccCCCceEEEChhc
Confidence 359999974 26789998 599999999998766421111 11245677654
No 129
>TIGR03019 pepcterm_femAB FemAB-related protein, PEP-CTERM system-associated. Members of this protein family are found always as part of extended exopolysaccharide biosynthesis loci in bacteria. In nearly every case, these loci contain determinants for the processing of the PEP-CTERM proposed C-terminal protein sorting signal. This family shows remote, local sequence similarity to the FemAB protein family (see pfam02388), whose members
Probab=74.40 E-value=9.1 Score=43.62 Aligned_cols=80 Identities=9% Similarity=0.051 Sum_probs=62.3
Q ss_pred EEEE-eCCEEEEEEEEEEecCceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecChhh--hHHHHHhccCc
Q 001383 970 AILT-VNQVVVSAGIFRIFGQELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSASE--AQAIWTNKFGF 1046 (1088)
Q Consensus 970 ~VL~-~~~evVsaA~lri~g~~~AEip~VAT~~~~RgqG~gr~L~~aIE~~L~~lgV~~LvLpA~~e--A~~~w~~kfGF 1046 (1088)
++++ .+|++|+++.+..++ +.+.....|+.+++|+.+-.-.|+-.+.+.+.+.|++++-+..... -.-.|+++|||
T Consensus 198 ~~a~~~~g~~va~~l~~~~~-~~~~~~~~g~~~~~~~~~~~~lL~w~~i~~a~~~G~~~fDfG~s~~~~G~~~FK~~~G~ 276 (330)
T TIGR03019 198 LTVRLGDGVVASAVLSFYFR-DEVLPYYAGGLREARDVAANDLMYWELMRRACERGLRVFDFGRSKRGTGPFKFKKNWGF 276 (330)
T ss_pred EEEEeCCCCEEEEEEEEEeC-CEEEEEeccChHHHHhhChHHHHHHHHHHHHHHCCCcEEEcCCCCCCCccHHHHhcCCC
Confidence 4446 689999988876665 4455568889999999999999999999999999999999876432 22336667899
Q ss_pred EEcC
Q 001383 1047 SMMT 1050 (1088)
Q Consensus 1047 ~~i~ 1050 (1088)
++..
T Consensus 277 ~~~~ 280 (330)
T TIGR03019 277 EPQP 280 (330)
T ss_pred eecc
Confidence 8654
No 130
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=74.22 E-value=2.9 Score=49.94 Aligned_cols=63 Identities=22% Similarity=0.439 Sum_probs=39.9
Q ss_pred ceeccCCCCCCCCCCCcceeecCCCCCcCCCCCCCCCCCCC----ccc---CCCCCcccCCCchhh---HHHHHHHh
Q 001383 808 CVLCRGRDFCKSRFGRRTVILCDQCEREYHVGCLKDHGMED----LQE---LPKGKWLCCADCKRI---NLALQKLV 874 (1088)
Q Consensus 808 C~vCk~~d~sksgf~~g~LL~CDqC~raYHv~CL~p~g~~~----LkE---iP~g~WfCp~~C~~I---~~kLqkLV 874 (1088)
|.+|.+-|+.. ++=..|.||.|..+-|..|.-.+.+.- ... ..+..++| .-|.+. ..-+.+++
T Consensus 131 C~iC~kfD~~~---n~~~Wi~Cd~CgH~cH~dCALr~~~i~~G~s~~g~~g~~d~~f~C-~~C~~~seLlG~vk~vf 203 (446)
T PF07227_consen 131 CCICSKFDDNK---NTCSWIGCDVCGHWCHLDCALRHELIGTGPSVKGSIGTLDMQFHC-RACGKTSELLGFVKKVF 203 (446)
T ss_pred ccccCCcccCC---CCeeEEeccCCCceehhhhhcccccccCCccCCCCCccCceEEEc-cCCCChhhHHHHHHHHH
Confidence 88998876654 334479999999999999977654321 111 11345666 788754 34444443
No 131
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=72.69 E-value=3.8 Score=49.63 Aligned_cols=48 Identities=27% Similarity=0.552 Sum_probs=40.7
Q ss_pred CccccccccccccCCceEecCCCCCccccccCCCCCCCCCCcccccccc
Q 001383 713 SKENDDLCGICMDGGDLLCCDSCPRAFHIDCVSLPGIPSGTWHCRYCMN 761 (1088)
Q Consensus 713 s~~ndd~C~VC~dgGeLl~CD~C~rafH~~Cl~~~~vP~G~W~C~~C~~ 761 (1088)
...+.+.|.+|.++|.+++|+.|..++|..|... ..|+..|.|..|..
T Consensus 85 ~~~~~~~c~vc~~ggs~v~~~s~~~~~~r~c~~~-~~~~c~~~~~d~~~ 132 (463)
T KOG1081|consen 85 PKIEPSECFVCFKGGSLVTCKSRIQAPHRKCKPA-QLEKCSKRCTDCRA 132 (463)
T ss_pred cCCCcchhccccCCCccceeccccccccccCcCc-cCcccccCCcceee
Confidence 4457789999999999999999999999999864 66778888887764
No 132
>cd04265 DUF619-NAGS-U DUF619 domain of various N-acetylglutamate Synthases (NAGS) of the urea (U) cycle of humans and fish. This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=71.43 E-value=7.6 Score=37.79 Aligned_cols=48 Identities=19% Similarity=0.169 Sum_probs=37.4
Q ss_pred EeCCEEEEEEEEEEec-CceEEEeeeeeccCcccCChhHHHHHHHHHHh
Q 001383 973 TVNQVVVSAGIFRIFG-QELAELPLVATSNDCQGQGYFQSLFCCIEKLL 1020 (1088)
Q Consensus 973 ~~~~evVsaA~lri~g-~~~AEip~VAT~~~~RgqG~gr~L~~aIE~~L 1020 (1088)
+.++..=++|.+..-. .+++-|-.+|+.+..||+|+++.|+.+|-+..
T Consensus 15 y~~e~y~~~aivt~~~~~~~~yLdKfaV~~~~~g~gv~d~vf~~i~~d~ 63 (99)
T cd04265 15 YLSEGYNAAAIVTNEEVDGVPYLDKFAVSSSAQGEGTGEALWRRLRRDF 63 (99)
T ss_pred EEeCCCcEEEEEeccCCCCceEEEEEEEchhhhhcChHHHHHHHHHhhC
Confidence 3444455566654433 47999999999999999999999999998774
No 133
>PF13880 Acetyltransf_13: ESCO1/2 acetyl-transferase
Probab=71.11 E-value=3 Score=38.33 Aligned_cols=28 Identities=11% Similarity=0.106 Sum_probs=24.8
Q ss_pred EEeeeeeccCcccCChhHHHHHHHHHHh
Q 001383 993 ELPLVATSNDCQGQGYFQSLFCCIEKLL 1020 (1088)
Q Consensus 993 Eip~VAT~~~~RgqG~gr~L~~aIE~~L 1020 (1088)
=|.+|-|.+.+|++|+.++||+++-...
T Consensus 7 GI~RIWV~~~~RR~GIAt~Lld~ar~~~ 34 (70)
T PF13880_consen 7 GISRIWVSPSHRRKGIATRLLDAARENF 34 (70)
T ss_pred EeEEEEeChhhhhhhHHHHHHHHHHHhc
Confidence 3788999999999999999999988663
No 134
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=69.96 E-value=2.3 Score=37.19 Aligned_cols=28 Identities=32% Similarity=0.896 Sum_probs=25.0
Q ss_pred cccccccc----CCceEecCCCCCccccccCC
Q 001383 718 DLCGICMD----GGDLLCCDSCPRAFHIDCVS 745 (1088)
Q Consensus 718 d~C~VC~d----gGeLl~CD~C~rafH~~Cl~ 745 (1088)
..|.+|++ +++++.|..|...||.+|..
T Consensus 6 ~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~ 37 (54)
T PF14446_consen 6 CKCPVCGKKFKDGDDIVVCPECGAPYHRDCWE 37 (54)
T ss_pred ccChhhCCcccCCCCEEECCCCCCcccHHHHh
Confidence 46999984 78999999999999999995
No 135
>PF07897 DUF1675: Protein of unknown function (DUF1675); InterPro: IPR012463 The members of this family are sequences derived from hypothetical plant proteins of unknown function. One member of this family (Q9SFV5 from SWISSPROT) is annotated as a putative RNA-binding protein, but no evidence was found to support this.
Probab=68.97 E-value=3.1 Score=47.39 Aligned_cols=32 Identities=41% Similarity=0.787 Sum_probs=30.1
Q ss_pred ceeeccCCCccChhhhhhccCcccccccccce
Q 001383 659 GILCTCCNSEVSPSQFEAHAGWASRRKPFQHI 690 (1088)
Q Consensus 659 GI~C~CCn~~~SPSeFE~HAG~~srrkpy~sI 690 (1088)
.|.|.|=+..+||.+|-.|||....-+|.++|
T Consensus 252 ~i~c~chg~~~~~~efv~h~~~~~~~~p~~hi 283 (284)
T PF07897_consen 252 RIVCVCHGSFLSPAEFVKHAGGGDVANPLRHI 283 (284)
T ss_pred EEEEEecCCCCCHHHHHHhcCCCCcCCchhcc
Confidence 59999999999999999999998888999988
No 136
>COG3818 Predicted acetyltransferase, GNAT superfamily [General function prediction only]
Probab=67.71 E-value=13 Score=38.24 Aligned_cols=58 Identities=12% Similarity=0.205 Sum_probs=45.4
Q ss_pred ccCcccCChhHHHHHHHHHHhhhcCccEEEe----cChhhhHHHHHhccCcEEcCHHHHHhh
Q 001383 1000 SNDCQGQGYFQSLFCCIEKLLGFLNVKTLVL----PSASEAQAIWTNKFGFSMMTEEEQNKY 1057 (1088)
Q Consensus 1000 ~~~~RgqG~gr~L~~aIE~~L~~lgV~~LvL----pA~~eA~~~w~~kfGF~~i~~~el~~~ 1057 (1088)
-...||.|.+|+|...+-..+...|..+|++ +--..|...+...|||+.+++.++.-.
T Consensus 93 A~~aRGrG~aRalY~Dlf~~Ae~agy~~~tCEVn~DppnpasdaFHaalGF~eVG~a~ihgg 154 (167)
T COG3818 93 ASRARGRGVARALYADLFSYAELAGYPYLTCEVNLDPPNPASDAFHAALGFHEVGQATIHGG 154 (167)
T ss_pred EecccccchHHHHHHHHHHHHHhcCCceEEEEecCCCCChHHHHHhhhcCceEccceEEecc
Confidence 3346899999999999999999999999887 223355667777799999998655443
No 137
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=66.01 E-value=3.9 Score=35.83 Aligned_cols=35 Identities=23% Similarity=0.684 Sum_probs=28.0
Q ss_pred CcceeccCCCCCCCCCCCcceeecCCCCCcCCCCCCCCCC
Q 001383 806 GGCVLCRGRDFCKSRFGRRTVILCDQCEREYHVGCLKDHG 845 (1088)
Q Consensus 806 ~~C~vCk~~d~sksgf~~g~LL~CDqC~raYHv~CL~p~g 845 (1088)
..|.+|++.- .+++.++.|..|..-||-.|....+
T Consensus 6 ~~C~~Cg~~~-----~~~dDiVvCp~CgapyHR~C~~~~g 40 (54)
T PF14446_consen 6 CKCPVCGKKF-----KDGDDIVVCPECGAPYHRDCWEKAG 40 (54)
T ss_pred ccChhhCCcc-----cCCCCEEECCCCCCcccHHHHhhCC
Confidence 4599999841 2357899999999999999987654
No 138
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=64.97 E-value=3.5 Score=53.66 Aligned_cols=45 Identities=24% Similarity=0.741 Sum_probs=38.0
Q ss_pred CcceeccCCCCCCCCCCCcceeecCCCCCcCCCCCCCCCCCCCcccCCCCCcccCCCch
Q 001383 806 GGCVLCRGRDFCKSRFGRRTVILCDQCEREYHVGCLKDHGMEDLQELPKGKWLCCADCK 864 (1088)
Q Consensus 806 ~~C~vCk~~d~sksgf~~g~LL~CDqC~raYHv~CL~p~g~~~LkEiP~g~WfCp~~C~ 864 (1088)
..|.+|++ .+.+++|..|++.||..|+.+ ++.+.|+..|-| .-|.
T Consensus 345 dhcrf~~d---------~~~~lc~Et~prvvhlEcv~h----P~~~~~s~~~e~-evc~ 389 (1414)
T KOG1473|consen 345 DHCRFCHD---------LGDLLCCETCPRVVHLECVFH----PRFAVPSAFWEC-EVCN 389 (1414)
T ss_pred ccccccCc---------ccceeecccCCceEEeeecCC----ccccCCCccchh-hhhh
Confidence 46999987 467999999999999999984 677889999999 4554
No 139
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=59.30 E-value=1 Score=36.63 Aligned_cols=40 Identities=28% Similarity=0.659 Sum_probs=24.3
Q ss_pred ccccccccC---C-ceEecCCCCCccccccCCCCCCCCCCccccccc
Q 001383 718 DLCGICMDG---G-DLLCCDSCPRAFHIDCVSLPGIPSGTWHCRYCM 760 (1088)
Q Consensus 718 d~C~VC~dg---G-eLl~CD~C~rafH~~Cl~~~~vP~G~W~C~~C~ 760 (1088)
|.|.||.+. + .++... |...||..|+... -.....||.|+
T Consensus 1 d~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~--~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEW--LKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHH--HHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHH--HHhCCcCCccC
Confidence 468899853 3 444444 9999999998611 11123788875
No 140
>PF04377 ATE_C: Arginine-tRNA-protein transferase, C terminus; InterPro: IPR007472 Arginine-tRNA-protein transferase catalyses the post-translational conjugation of arginine to the N terminus of a protein. In eukaryotes, this functions as part of the N terminus rule pathway of protein degradation by conjugating a destabilising amino acid to the N-terminal aspartate or glutamate of a protein, targeting the protein for ubiquitin-dependent proteolysis. N-terminal cysteine is sometimes modified []. In Saccharomyces cerevisiae, Cys20, 23, 94 and/or 95 are thought to be important for activity []. Of these, only Cys 94 appears to be completely conserved in this family. This entry represents the C-terminal region of the enzyme arginine-tRNA-protein transferase, found in both eukaryotic and prokaryotic enzymes.; GO: 0004057 arginyltransferase activity, 0016598 protein arginylation
Probab=58.89 E-value=39 Score=34.43 Aligned_cols=63 Identities=11% Similarity=0.073 Sum_probs=53.1
Q ss_pred ceEEEEEEeCCEEEEEEEEEEecCceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEE
Q 001383 966 GMYCAILTVNQVVVSAGIFRIFGQELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLV 1029 (1088)
Q Consensus 966 GfY~~VL~~~~evVsaA~lri~g~~~AEip~VAT~~~~RgqG~gr~L~~aIE~~L~~lgV~~Lv 1029 (1088)
|-+-+-.+.+|++|++|.+.+..+.+.-|-.+= +|++....+|...+..-.++++++|.+.+-
T Consensus 38 ~t~~~~~~~~~kLiav~v~D~l~~glSaVY~fy-DPd~~~~SlG~~~iL~eI~~a~~~~l~y~Y 100 (128)
T PF04377_consen 38 GTYHLEYRLDGKLIAVAVVDILPDGLSAVYTFY-DPDYSKRSLGTYSILREIELARELGLPYYY 100 (128)
T ss_pred CCEEEEEEeCCeEEEEEEeecccchhhheeeee-CCCccccCcHHHHHHHHHHHHHHcCCCEEe
Confidence 334445568999999999999888777776654 789999999999999999999999999998
No 141
>COG5628 Predicted acetyltransferase [General function prediction only]
Probab=58.00 E-value=35 Score=34.77 Aligned_cols=87 Identities=13% Similarity=0.103 Sum_probs=59.0
Q ss_pred EEEEEEeCCEEEEEEEEE--Ee-----cCceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHH
Q 001383 968 YCAILTVNQVVVSAGIFR--IF-----GQELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSASEAQAIW 1040 (1088)
Q Consensus 968 Y~~VL~~~~evVsaA~lr--i~-----g~~~AEip~VAT~~~~RgqG~gr~L~~aIE~~L~~lgV~~LvLpA~~eA~~~w 1040 (1088)
=.++...+|.+||-+.+- ++ .-.++|+= +..-|||+||||+...+|-.....+ .+-.+++--..|..||
T Consensus 38 ~~~~~~~~~~~igf~l~L~~~~~~~~iD~~~~efF---Ii~k~~~~GvGR~aaK~If~~~~g~-w~Va~i~EN~PA~~fw 113 (143)
T COG5628 38 EAWLFRIGGLPVGFALVLDLAHSPTPIDRAVAEFF---IVRKHRRRGVGRAAAKAIFGSAWGV-WQVATVRENTPARAFW 113 (143)
T ss_pred ceeEEEECCceeeeeeeecccCCCCcccccchheE---eeehhhccchhHHHHHHHHHHhhce-EEEEEeccCChhHHHH
Confidence 345667889999988763 21 12355543 4457999999999999999876532 3456778888999999
Q ss_pred HhccCcE-EcCHHHHHhhhc
Q 001383 1041 TNKFGFS-MMTEEEQNKYRN 1059 (1088)
Q Consensus 1041 ~~kfGF~-~i~~~el~~~~~ 1059 (1088)
.+ +-+. .+..++.+..+.
T Consensus 114 K~-~~~t~~i~~E~r~d~~~ 132 (143)
T COG5628 114 KR-VAETYPVVEEDRQDARW 132 (143)
T ss_pred Hh-hhcccccchhhhhcccC
Confidence 99 5544 334455555443
No 142
>KOG2752 consensus Uncharacterized conserved protein, contains N-recognin-type Zn-finger [General function prediction only]
Probab=57.79 E-value=9 Score=44.05 Aligned_cols=109 Identities=16% Similarity=0.241 Sum_probs=60.6
Q ss_pred cccccc-cCCceEecCCCCCccccccCCCCCCCCCCcccccccccccccceeeccccccccccccccccccccchheeee
Q 001383 719 LCGICM-DGGDLLCCDSCPRAFHIDCVSLPGIPSGTWHCRYCMNTFQKEKFVEYNANARAAGRIEGVDPFAQMVSRCIRI 797 (1088)
Q Consensus 719 ~C~VC~-dgGeLl~CD~C~rafH~~Cl~~~~vP~G~W~C~~C~~~~~Kek~v~~~~na~aagrveGvdpieqi~~rciRi 797 (1088)
.|-.|. +++....|-.|.-.+|-.=..+.-...+.+.|.-|...+.+...- ....+..++. ..+-.
T Consensus 57 sClTC~P~~~~agvC~~C~~~CH~~H~lveL~tKR~FrCDCg~sk~g~~sc~-----l~~~~~~~n~---~N~YN----- 123 (345)
T KOG2752|consen 57 SCLTCTPAPEMAGVCYACSLSCHDGHELVELYTKRNFRCDCGNSKFGRCSCN-----LLEDKDAENS---ENLYN----- 123 (345)
T ss_pred EeecccCChhhceeEEEeeeeecCCceeeeccccCCcccccccccccccccc-----cccccccccc---hhhhh-----
Confidence 566666 444677777887777766665555567888888777655432110 0000000000 00000
Q ss_pred ccCCCCCCCcceeccCCCCCCCCCCCcceeecCCCCCcCC-CCCCCCC
Q 001383 798 VQTPDTELGGCVLCRGRDFCKSRFGRRTVILCDQCEREYH-VGCLKDH 844 (1088)
Q Consensus 798 vk~~d~e~~~C~vCk~~d~sksgf~~g~LL~CDqC~raYH-v~CL~p~ 844 (1088)
...+-.+| .|......+..-.++.|++|-.|+-||| -+|++..
T Consensus 124 ---hNfqG~~C-~Cd~~Ypdp~~~~e~~m~QC~iCEDWFHce~c~~~~ 167 (345)
T KOG2752|consen 124 ---HNFQGLFC-KCDTPYPDPVRTEEGEMLQCVICEDWFHCEGCMQAK 167 (345)
T ss_pred ---hhhcceeE-EecCCCCCccccccceeeeEEeccchhcccccCccc
Confidence 00001223 4555544433344688999999999999 8998864
No 143
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=56.60 E-value=6.2 Score=35.86 Aligned_cols=46 Identities=33% Similarity=0.745 Sum_probs=18.3
Q ss_pred cccccccc----CCc--eEecC--CCCCccccccCC------CCC---CCCCCcccccccccc
Q 001383 718 DLCGICMD----GGD--LLCCD--SCPRAFHIDCVS------LPG---IPSGTWHCRYCMNTF 763 (1088)
Q Consensus 718 d~C~VC~d----gGe--Ll~CD--~C~rafH~~Cl~------~~~---vP~G~W~C~~C~~~~ 763 (1088)
..|.||.. .++ .+.|+ .|...||..||. ... ...-.+.||.|..++
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i 65 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPI 65 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEE
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCee
Confidence 46888873 232 47798 899999999994 111 111246799998643
No 144
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=56.58 E-value=7 Score=45.70 Aligned_cols=45 Identities=29% Similarity=0.691 Sum_probs=32.7
Q ss_pred cccccccc---CCceEecCCCCCccccccCCCCCCCCCCcccccccccc
Q 001383 718 DLCGICMD---GGDLLCCDSCPRAFHIDCVSLPGIPSGTWHCRYCMNTF 763 (1088)
Q Consensus 718 d~C~VC~d---gGeLl~CD~C~rafH~~Cl~~~~vP~G~W~C~~C~~~~ 763 (1088)
+.|.||.+ .|+.+-==-|.+.||..|+++.-... .-+||.|+...
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~-r~~CPvCK~di 277 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQT-RTFCPVCKRDI 277 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhc-CccCCCCCCcC
Confidence 69999986 35555446789999999998543322 34799999744
No 145
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=55.42 E-value=6 Score=41.94 Aligned_cols=34 Identities=24% Similarity=0.622 Sum_probs=25.9
Q ss_pred ceeccCCCCCCCCCCCcceeecCCCCCcCCCCCCCCC
Q 001383 808 CVLCRGRDFCKSRFGRRTVILCDQCEREYHVGCLKDH 844 (1088)
Q Consensus 808 C~vCk~~d~sksgf~~g~LL~CDqC~raYHv~CL~p~ 844 (1088)
|..|..... ....+.||.|..|..+||..||.+.
T Consensus 2 C~~C~~~g~---~~~kG~Lv~CQGCs~sYHk~CLG~R 35 (175)
T PF15446_consen 2 CDTCGYEGD---DRNKGPLVYCQGCSSSYHKACLGPR 35 (175)
T ss_pred cccccCCCC---CccCCCeEEcCccChHHHhhhcCCc
Confidence 788864221 2235789999999999999999875
No 146
>PRK00756 acyltransferase NodA; Provisional
Probab=55.40 E-value=19 Score=38.43 Aligned_cols=42 Identities=26% Similarity=0.229 Sum_probs=36.4
Q ss_pred eEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecCh
Q 001383 991 LAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSA 1033 (1088)
Q Consensus 991 ~AEip~VAT~~~~RgqG~gr~L~~aIE~~L~~lgV~~LvLpA~ 1033 (1088)
+||+.+.|++++..|.|++..+ .++--.|++|||..-|---.
T Consensus 85 VaElGLygVRpDLEGlGi~~S~-r~m~PvLq~LgVPF~FGtVR 126 (196)
T PRK00756 85 VAELGLYGVRPDLEGLGIAHSI-RAMYPVLQELGVPFAFGTVR 126 (196)
T ss_pred EEEeeeeeeccccccccchhhH-HHHHHHHHhcCCCeecccch
Confidence 8999999999999999999977 68889999999986664333
No 147
>KOG4135 consensus Predicted phosphoglucosamine acetyltransferase [Carbohydrate transport and metabolism]
Probab=55.01 E-value=24 Score=37.03 Aligned_cols=59 Identities=12% Similarity=0.112 Sum_probs=39.0
Q ss_pred eEEEeeeeeccCcccCChhHHHHHHHHHHhhh-cCccEEEecC--hhhhHHHHHhccCcEEc
Q 001383 991 LAELPLVATSNDCQGQGYFQSLFCCIEKLLGF-LNVKTLVLPS--ASEAQAIWTNKFGFSMM 1049 (1088)
Q Consensus 991 ~AEip~VAT~~~~RgqG~gr~L~~aIE~~L~~-lgV~~LvLpA--~~eA~~~w~~kfGF~~i 1049 (1088)
++|+-+.---|..||+|||+..|.++...+.+ +++-....-. +..+-=..++||+|.-+
T Consensus 107 ~gE~EvMIAEP~~RgKG~G~eav~~ml~y~~s~l~l~Ky~vkig~~nk~sl~lFkk~~f~q~ 168 (185)
T KOG4135|consen 107 TGEVEVMIAEPRGRGKGIGTEAVRAMLAYAYSVLKLDKYEVKIGMDNKPSLRLFKKFLFTQV 168 (185)
T ss_pred eeeEEEEEecccccCCCccHHHHHHHHHHHHHHhhhheEEEEecCCCchHHHHHHHhhheee
Confidence 45666666779999999999999999888654 4555444432 22222234445999743
No 148
>PRK14852 hypothetical protein; Provisional
Probab=53.14 E-value=37 Score=44.89 Aligned_cols=85 Identities=14% Similarity=0.085 Sum_probs=65.5
Q ss_pred EEEEEEeCCEEEEEEEEEEe----------------------cCceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCc
Q 001383 968 YCAILTVNQVVVSAGIFRIF----------------------GQELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNV 1025 (1088)
Q Consensus 968 Y~~VL~~~~evVsaA~lri~----------------------g~~~AEip~VAT~~~~RgqG~gr~L~~aIE~~L~~lgV 1025 (1088)
+++++-..+++|++.++.+- |..++|+-.+|+++..|.+=+--.|+..+-+.+...++
T Consensus 76 ~~~i~k~~~~~l~T~t~~~ds~~~Gl~~D~lf~~eLd~lr~~Gr~v~EvtrLa~d~~~~~~~l~~~l~~~~~~y~~~~~~ 155 (989)
T PRK14852 76 SVFIFKSYHDVLCTLTHIPDSGLFGLPMDTLYKPEVDALRAQGRNVVEVGALATQYSRRWTNLMVFLAKAMFQYSMMSEV 155 (989)
T ss_pred eEEEeccCCcEEEEEEEecCCcccCcCHHHHHHHHHHHHHHcCCeEEeeehheechhhcccchhHHHHHHHHHHHHHcCC
Confidence 34444455666666665443 45799999999988777766666777777666677899
Q ss_pred cEEEecChhhhHHHHHhccCcEEcCHH
Q 001383 1026 KTLVLPSASEAQAIWTNKFGFSMMTEE 1052 (1088)
Q Consensus 1026 ~~LvLpA~~eA~~~w~~kfGF~~i~~~ 1052 (1088)
..+++---+.=..||++-|||+.+++.
T Consensus 156 dd~~i~VnPkH~~FY~r~l~f~~ig~~ 182 (989)
T PRK14852 156 DDILVTVNPKHVKFYTDIFLFKPFGEV 182 (989)
T ss_pred CeEEEEECcchHHHHHHHhCCcccccc
Confidence 999998889999999999999999863
No 149
>PF01853 MOZ_SAS: MOZ/SAS family; InterPro: IPR002717 Moz is a monocytic leukemia Zn_finger protein and the SAS protein from Saccharomyces cerevisiae (Baker's yeast) is involved in silencing the Hmr locus. These proteins were reported to be homologous to acetyltransferases [] but this similarity is not supported by standard sequence analysis.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3TO6_A 1MJA_A 1MJ9_A 3TO7_A 3TO9_A 1MJB_A 1FY7_A 2OZU_A 2RC4_A 2OU2_A ....
Probab=49.90 E-value=57 Score=35.43 Aligned_cols=87 Identities=15% Similarity=0.073 Sum_probs=49.6
Q ss_pred hHHHHHHHHhhhhccCcccccCcCCCccccccccccCCCcceeceEEEEEEeCCE--EEEEEEEEEecCceEEEeeeeec
Q 001383 923 RALLSKAVSIFHDRFDPIIESASKLDLIPAMVYGRSHRGQDYHGMYCAILTVNQV--VVSAGIFRIFGQELAELPLVATS 1000 (1088)
Q Consensus 923 ~~~LavAl~If~EcFdPIiD~~Sg~DLIp~MVYg~~~~rl~f~GfY~~VL~~~~e--vVsaA~lri~g~~~AEip~VAT~ 1000 (1088)
.....+.+.+|-..| +|.+|= | -+.+---||++.-..++. +||-=+=--...+---|--|-|.
T Consensus 25 ~~~yCqnLcLlaKLF---Ld~Ktl--------y----ydv~~F~FYVl~e~d~~g~h~vGyFSKEk~s~~~~NLsCIl~l 89 (188)
T PF01853_consen 25 HKLYCQNLCLLAKLF---LDHKTL--------Y----YDVDPFLFYVLTEKDDDGFHIVGYFSKEKESWDNNNLSCILTL 89 (188)
T ss_dssp SHHHHHHHHHHHHTT----SSGCC--------T----T-STTEEEEEEEEEETTEEEEEEEEEEESS-TT-EEESEEEE-
T ss_pred CchHHHHHHHHHHHH---hhCeEE--------E----eecCceEEEEEEEecCccceeEEEEEEEecccCCeeEeehhhc
Confidence 456788899999999 444442 1 112233466665444433 22211110011122356678999
Q ss_pred cCcccCChhHHHHHHHHHHhhhcC
Q 001383 1001 NDCQGQGYFQSLFCCIEKLLGFLN 1024 (1088)
Q Consensus 1001 ~~~RgqG~gr~L~~aIE~~L~~lg 1024 (1088)
|.||++|||+.|++.-=.+.+.-|
T Consensus 90 P~yQrkGyG~~LI~fSY~LSr~e~ 113 (188)
T PF01853_consen 90 PPYQRKGYGRFLIDFSYELSRREG 113 (188)
T ss_dssp GGGTTSSHHHHHHHHHHHHHHHTT
T ss_pred chhhhcchhhhhhhhHHHHhhccC
Confidence 999999999999987666655444
No 150
>PF13444 Acetyltransf_5: Acetyltransferase (GNAT) domain
Probab=49.69 E-value=33 Score=32.72 Aligned_cols=25 Identities=12% Similarity=0.266 Sum_probs=21.0
Q ss_pred CceEEEeeeeeccCcccCChhHHHH
Q 001383 989 QELAELPLVATSNDCQGQGYFQSLF 1013 (1088)
Q Consensus 989 ~~~AEip~VAT~~~~RgqG~gr~L~ 1013 (1088)
..++||-++|+.++||+...-..|.
T Consensus 76 ~~~~EisRl~V~~~~R~~~~~~~L~ 100 (101)
T PF13444_consen 76 RRVAEISRLCVHPEYRRRKVLLLLW 100 (101)
T ss_pred CcEEEeehheECHhHCCChHHHHHh
Confidence 3689999999999999987776664
No 151
>KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription]
Probab=47.57 E-value=21 Score=41.77 Aligned_cols=50 Identities=14% Similarity=0.160 Sum_probs=38.2
Q ss_pred CcccCChhHHHHHHHHHHhhhc-CccEEEecChhhhHHHHHhccCcEEcCHH
Q 001383 1002 DCQGQGYFQSLFCCIEKLLGFL-NVKTLVLPSASEAQAIWTNKFGFSMMTEE 1052 (1088)
Q Consensus 1002 ~~RgqG~gr~L~~aIE~~L~~l-gV~~LvLpA~~eA~~~w~~kfGF~~i~~~ 1052 (1088)
.||.||||..||+..|+.+++- |-..+-+-+-......|.+ |||..-++-
T Consensus 498 KfQHQG~GtLLmeEAERIAr~EHgS~KiavISGVGtR~YY~k-lGY~LdGPY 548 (554)
T KOG2535|consen 498 KFQHQGFGTLLMEEAERIAREEHGSGKIAVISGVGTRNYYRK-LGYELDGPY 548 (554)
T ss_pred hhhhcchhhHHHHHHHHHHHHhcCCCceEEEeccchHHHHHh-hCeeecChh
Confidence 6899999999999999999864 4445655555566667766 999876653
No 152
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=46.08 E-value=4.5 Score=36.90 Aligned_cols=26 Identities=27% Similarity=0.672 Sum_probs=17.4
Q ss_pred CCCCCccccccCCCCCCCCCCccccccc
Q 001383 733 DSCPRAFHIDCVSLPGIPSGTWHCRYCM 760 (1088)
Q Consensus 733 D~C~rafH~~Cl~~~~vP~G~W~C~~C~ 760 (1088)
..|...||..|+. .+-.....||.|+
T Consensus 48 ~~C~H~FH~~Ci~--~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 48 GPCGHIFHFHCIS--QWLKQNNTCPLCR 73 (73)
T ss_dssp ETTSEEEEHHHHH--HHHTTSSB-TTSS
T ss_pred cccCCCEEHHHHH--HHHhcCCcCCCCC
Confidence 4699999999996 1112234888885
No 153
>PF12261 T_hemolysin: Thermostable hemolysin; InterPro: IPR022050 This family of proteins is found in bacteria. Proteins in this family are typically between 200 and 228 amino acids in length. T_hemolysin is a pore-forming toxin of bacteria, able to lyse erythrocytes from a number of mammalian species.
Probab=43.13 E-value=42 Score=36.05 Aligned_cols=56 Identities=16% Similarity=0.323 Sum_probs=48.1
Q ss_pred CceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccCcEEc
Q 001383 989 QELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSASEAQAIWTNKFGFSMM 1049 (1088)
Q Consensus 989 ~~~AEip~VAT~~~~RgqG~gr~L~~aIE~~L~~lgV~~LvLpA~~eA~~~w~~kfGF~~i 1049 (1088)
..++||.=+|.. +.|.++.|+..|-..|...|++.++.-|.........+ +|+...
T Consensus 85 ~~IvEvGnLAs~----~~g~~~~l~~~l~~~L~~~g~~w~vfTaT~~lr~~~~r-lgl~~~ 140 (179)
T PF12261_consen 85 SQIVEVGNLASF----SPGAARLLFAALAQLLAQQGFEWVVFTATRQLRNLFRR-LGLPPT 140 (179)
T ss_pred hheeEeechhhc----CcccHHHHHHHHHHHHHHCCCCEEEEeCCHHHHHHHHH-cCCCce
Confidence 357888777765 58999999999999999999999999999999999887 887543
No 154
>PLN03238 probable histone acetyltransferase MYST; Provisional
Probab=40.83 E-value=57 Score=37.56 Aligned_cols=86 Identities=14% Similarity=0.063 Sum_probs=47.5
Q ss_pred HHHHHHHHhhhhccCcccccCcCCCccccccccccCCCcceeceEEEEEEe--CCEEEEEEEEEEecCceEEEeeeeecc
Q 001383 924 ALLSKAVSIFHDRFDPIIESASKLDLIPAMVYGRSHRGQDYHGMYCAILTV--NQVVVSAGIFRIFGQELAELPLVATSN 1001 (1088)
Q Consensus 924 ~~LavAl~If~EcFdPIiD~~Sg~DLIp~MVYg~~~~rl~f~GfY~~VL~~--~~evVsaA~lri~g~~~AEip~VAT~~ 1001 (1088)
....+-+-+|-..| .|.+|-- -+.+.--||++.-.. +..+||-=+=--...+---|--|-|.|
T Consensus 101 ~~yCqnLcLlaKLF---LdhKtly------------yDV~~FlFYVl~e~d~~g~h~vGYFSKEK~s~~~nNLaCIltLP 165 (290)
T PLN03238 101 KVYCQNLCLLAKLF---LDHKTLY------------YDVDPFLFYVMTEVDDHGSHIVGYFSKEKVSAEDYNLACILTLP 165 (290)
T ss_pred hhHHHHHHHHHHHh---hcCcccc------------ccccceEEEEEEEecCCCcEEEEEeceeccccCCCcEEEEEecC
Confidence 35677778888888 4555421 122333345443221 123333221101111112366788999
Q ss_pred CcccCChhHHHHHHHHHHhhhcC
Q 001383 1002 DCQGQGYFQSLFCCIEKLLGFLN 1024 (1088)
Q Consensus 1002 ~~RgqG~gr~L~~aIE~~L~~lg 1024 (1088)
.||++|||+.|++.-=.+.+.-|
T Consensus 166 pyQrkGyG~~LI~fSYeLSr~Eg 188 (290)
T PLN03238 166 PYQRKGYGKFLISFAYELSKREG 188 (290)
T ss_pred hhhhccHhHhHHHHHhHHhhccC
Confidence 99999999999987666554444
No 155
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=39.00 E-value=7.5 Score=51.75 Aligned_cols=52 Identities=29% Similarity=0.668 Sum_probs=34.0
Q ss_pred CccccccccccccCC-ceEec--CCCCCccccccCC--------CCCCCCCCccccccccccc
Q 001383 713 SKENDDLCGICMDGG-DLLCC--DSCPRAFHIDCVS--------LPGIPSGTWHCRYCMNTFQ 764 (1088)
Q Consensus 713 s~~ndd~C~VC~dgG-eLl~C--D~C~rafH~~Cl~--------~~~vP~G~W~C~~C~~~~~ 764 (1088)
..+.||.|.+|-... ...-| -+|...||..|.. -|.+.-|--+||.|++++.
T Consensus 3482 kQD~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3482 KQDADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred hcccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 456788888887432 01112 2699999999974 1233346779999998754
No 156
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=39.00 E-value=16 Score=35.24 Aligned_cols=30 Identities=37% Similarity=0.831 Sum_probs=25.7
Q ss_pred cccccccccc-CCceEecCC--CCCccccccCC
Q 001383 716 NDDLCGICMD-GGDLLCCDS--CPRAFHIDCVS 745 (1088)
Q Consensus 716 ndd~C~VC~d-gGeLl~CD~--C~rafH~~Cl~ 745 (1088)
....|.+|+. .|-.+-|.. |..+||..|.-
T Consensus 54 ~~~~C~iC~~~~G~~i~C~~~~C~~~fH~~CA~ 86 (110)
T PF13832_consen 54 FKLKCSICGKSGGACIKCSHPGCSTAFHPTCAR 86 (110)
T ss_pred cCCcCcCCCCCCceeEEcCCCCCCcCCCHHHHH
Confidence 4568999997 588899987 99999999984
No 157
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=38.98 E-value=28 Score=37.69 Aligned_cols=71 Identities=20% Similarity=0.389 Sum_probs=45.4
Q ss_pred CCCCceeccCCC-cHHHHHHHhcCCChhhHhhhhhh------------------cccC-------ccccccceecccCCc
Q 001383 474 RPPEYIYLENGK-TLRDIMNVCKDSPLETLEKAVRM------------------VLGS-------SSMKKANFCLNCRVS 527 (1088)
Q Consensus 474 rp~~~IyLeNG~-SL~dvl~alk~~~l~~l~~~i~~------------------~~g~-------~~~~~l~~C~~Cp~s 527 (1088)
.+.+|++-+.-. ||.|+++.-.+.=+..|...++. .+|. -..+..+.|..|.+-
T Consensus 102 ~~~~hl~~~~~~YSl~DL~~v~~G~L~~~L~~l~~~~~~HV~~C~lC~~kGfiCe~C~~~~~IfPF~~~~~~~C~~C~~v 181 (202)
T PF13901_consen 102 QPRDHLLEDPHLYSLADLVQVKSGQLLPQLEKLVQFAEKHVYSCELCQQKGFICEICNSDDIIFPFQIDTTVRCPKCKSV 181 (202)
T ss_pred cchhhhhhCCceEcHHHHHHHhhchHHHHHHHHHHHHHHHHHHhHHHHhCCCCCccCCCCCCCCCCCCCCeeeCCcCccc
Confidence 567887655444 99999887655444444444321 1111 112267899999999
Q ss_pred ccccccccccccccccccc
Q 001383 528 FSNAGVEELMLLCKSCVEL 546 (1088)
Q Consensus 528 fh~~c~~~g~w~C~~C~~~ 546 (1088)
||..|... -.|+-|.-.
T Consensus 182 ~H~~C~~~--~~CpkC~R~ 198 (202)
T PF13901_consen 182 FHKSCFRK--KSCPKCARR 198 (202)
T ss_pred cchhhcCC--CCCCCcHhH
Confidence 99999774 459888543
No 158
>PRK01305 arginyl-tRNA-protein transferase; Provisional
Probab=38.78 E-value=1.4e+02 Score=33.52 Aligned_cols=58 Identities=9% Similarity=0.009 Sum_probs=49.4
Q ss_pred EEEeCCEEEEEEEEEEecCceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEE
Q 001383 971 ILTVNQVVVSAGIFRIFGQELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLV 1029 (1088)
Q Consensus 971 VL~~~~evVsaA~lri~g~~~AEip~VAT~~~~RgqG~gr~L~~aIE~~L~~lgV~~Lv 1029 (1088)
-.+.+|++||+|.+-+..+.+.-|-.+ =+|+|-..++|...+..-.++++.+|.+.+.
T Consensus 148 ey~~~g~LiaVav~D~l~d~lSAVY~F-yDPd~~~~SLG~~~iL~qI~~ak~~gl~y~Y 205 (240)
T PRK01305 148 EFRGDGKLVAVAVTDVLDDGLSAVYTF-YDPDEEHRSLGTFAILWQIELAKRLGLPYVY 205 (240)
T ss_pred EEEeCCeEEEEEEEeccCCceeeEEEe-eCCCccccCCHHHHHHHHHHHHHHcCCCeEe
Confidence 345789999999999988888777544 5788888889999888888999999999998
No 159
>KOG2747 consensus Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=38.59 E-value=27 Score=41.59 Aligned_cols=75 Identities=20% Similarity=0.265 Sum_probs=44.5
Q ss_pred hHHHHHHHHhhhhccCcccccCcCCCccccccccccCCCcceeceEEEEEEeCCEEEEEEEEEEecC--ceEE---Eeee
Q 001383 923 RALLSKAVSIFHDRFDPIIESASKLDLIPAMVYGRSHRGQDYHGMYCAILTVNQVVVSAGIFRIFGQ--ELAE---LPLV 997 (1088)
Q Consensus 923 ~~~LavAl~If~EcFdPIiD~~Sg~DLIp~MVYg~~~~rl~f~GfY~~VL~~~~evVsaA~lri~g~--~~AE---ip~V 997 (1088)
+....+-+=+|-..| +|++| +| .|...|.=+||...|..=. +=+|-. .-++ |--|
T Consensus 207 ~k~YCQnLCLlaKLF---LdhKT--------LY------yDvdpFlFYVlte~d~~G~---VGYFSKEK~s~~~yNlaCI 266 (396)
T KOG2747|consen 207 QKLYCQNLCLLAKLF---LDHKT--------LY------YDVDPFLFYVLTECDSYGC---VGYFSKEKESSENYNLACI 266 (396)
T ss_pred hhHHHHHHHHHHHHH---hcCce--------eE------EeccceEEEEEEecCCcce---eeeeccccccccccceeee
Confidence 456778888888888 34433 22 2334444444454432211 223332 2233 6678
Q ss_pred eeccCcccCChhHHHHHHHH
Q 001383 998 ATSNDCQGQGYFQSLFCCIE 1017 (1088)
Q Consensus 998 AT~~~~RgqG~gr~L~~aIE 1017 (1088)
-|.|.||++|||+.|++.==
T Consensus 267 LtLPpyQRkGYGklLIdFSY 286 (396)
T KOG2747|consen 267 LTLPPYQRKGYGKLLIDFSY 286 (396)
T ss_pred eecChhhhcccchhhhhhhh
Confidence 99999999999999987543
No 160
>PHA02929 N1R/p28-like protein; Provisional
Probab=38.52 E-value=11 Score=42.00 Aligned_cols=47 Identities=26% Similarity=0.653 Sum_probs=31.5
Q ss_pred ccccccccccCC---c-----eEecCCCCCccccccCCCCCCCCCCccccccccccc
Q 001383 716 NDDLCGICMDGG---D-----LLCCDSCPRAFHIDCVSLPGIPSGTWHCRYCMNTFQ 764 (1088)
Q Consensus 716 ndd~C~VC~dgG---e-----Ll~CD~C~rafH~~Cl~~~~vP~G~W~C~~C~~~~~ 764 (1088)
.+..|.+|.+.- + +..=..|.+.||..|+.. +-...-.||.|+..+.
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~--Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDI--WKKEKNTCPVCRTPFI 227 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHH--HHhcCCCCCCCCCEee
Confidence 457899998741 1 122347899999999962 2223447999997543
No 161
>PTZ00064 histone acetyltransferase; Provisional
Probab=38.33 E-value=36 Score=41.74 Aligned_cols=87 Identities=13% Similarity=-0.055 Sum_probs=47.3
Q ss_pred hHHHHHHHHhhhhccCcccccCcCCCccccccccccCCCcceeceEEEEEEe--CCEEEEEEEEEEecCceEEEeeeeec
Q 001383 923 RALLSKAVSIFHDRFDPIIESASKLDLIPAMVYGRSHRGQDYHGMYCAILTV--NQVVVSAGIFRIFGQELAELPLVATS 1000 (1088)
Q Consensus 923 ~~~LavAl~If~EcFdPIiD~~Sg~DLIp~MVYg~~~~rl~f~GfY~~VL~~--~~evVsaA~lri~g~~~AEip~VAT~ 1000 (1088)
.....+-|-+|-..| .|.+|-- -+.+.--||++.-.. +-.+||-=+=--.-.+---|--|-|.
T Consensus 329 ~klYCQNLCLLAKLF---LDhKTLY------------yDVdpFlFYVLtE~D~~G~HiVGYFSKEK~S~~~nNLACILtL 393 (552)
T PTZ00064 329 TRGYAENLCYLAKLF---LDHKTLQ------------YDVEPFLFYIVTEVDEEGCHIVGYFSKEKVSLLHYNLACILTL 393 (552)
T ss_pred chhHHHHHHHHHHHh---ccCcccc------------ccccceEEEEEEEecCCCcEEEEEecccccCcccCceEEEEec
Confidence 345678888888888 4454421 122223344443221 12343321110000111236678999
Q ss_pred cCcccCChhHHHHHHHHHHhhhcC
Q 001383 1001 NDCQGQGYFQSLFCCIEKLLGFLN 1024 (1088)
Q Consensus 1001 ~~~RgqG~gr~L~~aIE~~L~~lg 1024 (1088)
|.||++|||+.||+.-=.+.+.-|
T Consensus 394 PpyQRKGYGklLIdfSYeLSrrEg 417 (552)
T PTZ00064 394 PCYQRKGYGKLLVDLSYKLSLKEG 417 (552)
T ss_pred chhhhcchhhhhhhhhhhhhhhcC
Confidence 999999999999987655544333
No 162
>COG3916 LasI N-acyl-L-homoserine lactone synthetase [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=37.66 E-value=1.5e+02 Score=32.81 Aligned_cols=81 Identities=15% Similarity=0.107 Sum_probs=61.7
Q ss_pred eceEEEEEEeCCEEEEEEEEEEe---------------------cCceEEEeeeeecc--CcccCCh----hHHHHHHHH
Q 001383 965 HGMYCAILTVNQVVVSAGIFRIF---------------------GQELAELPLVATSN--DCQGQGY----FQSLFCCIE 1017 (1088)
Q Consensus 965 ~GfY~~VL~~~~evVsaA~lri~---------------------g~~~AEip~VAT~~--~~RgqG~----gr~L~~aIE 1017 (1088)
.-.|.+.+..+|+|+|+++|-.. ..+++|.-++|+.. .-+.+|= ...||..+-
T Consensus 51 ~t~Yll~~~~~g~I~G~~RlLptt~P~mL~~vF~~Ll~~~~~P~~p~vwEsSRF~vd~~~a~~~~g~~~~a~~el~~g~i 130 (209)
T COG3916 51 DTVYLLALTSDGRIVGCVRLLPTTGPYMLTDVFPALLEGGPPPSSPGVWESSRFAVDKPSARRAAGGVSPAAYELFAGMI 130 (209)
T ss_pred CceEEEEEcCCCcEEEEEEeccCCCcchhhhhhHHHhcCCCCCCCCCeEEEeeeeeccccchhhcCCccHHHHHHHHHHH
Confidence 44688877899999999997433 24799999999997 5555543 667999999
Q ss_pred HHhhhcCccEEEecChhhhHHHHHhccCc
Q 001383 1018 KLLGFLNVKTLVLPSASEAQAIWTNKFGF 1046 (1088)
Q Consensus 1018 ~~L~~lgV~~LvLpA~~eA~~~w~~kfGF 1046 (1088)
+.+...|+..|+.=...-.+.+..+ .||
T Consensus 131 e~a~~~G~~~IvtVt~~~meril~r-~Gw 158 (209)
T COG3916 131 EYALARGITGIVTVTDTGMERILRR-AGW 158 (209)
T ss_pred HHHHHcCCceEEEEEchHHHHHHHH-cCC
Confidence 9999999999997666555555555 555
No 163
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=36.77 E-value=9.1 Score=43.22 Aligned_cols=48 Identities=27% Similarity=0.530 Sum_probs=31.8
Q ss_pred cccccccccccC--------C--ceEecCCCCCccccccCCCCCCCCCCccccccccc
Q 001383 715 ENDDLCGICMDG--------G--DLLCCDSCPRAFHIDCVSLPGIPSGTWHCRYCMNT 762 (1088)
Q Consensus 715 ~ndd~C~VC~dg--------G--eLl~CD~C~rafH~~Cl~~~~vP~G~W~C~~C~~~ 762 (1088)
-++..|.+|++. | +-.+=-.|+..||.+|+.-.-+-...-.||.|+.+
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKek 279 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEK 279 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHH
Confidence 467799999953 1 12233368999999999633332334579999854
No 164
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=36.06 E-value=12 Score=46.49 Aligned_cols=49 Identities=31% Similarity=0.677 Sum_probs=34.0
Q ss_pred cceeccCCCCCCCCCCCcceeecCCCCCcCCCCCCCCCCCCCcccCCCCCcccCCCchhhHH
Q 001383 807 GCVLCRGRDFCKSRFGRRTVILCDQCEREYHVGCLKDHGMEDLQELPKGKWLCCADCKRINL 868 (1088)
Q Consensus 807 ~C~vCk~~d~sksgf~~g~LL~CDqC~raYHv~CL~p~g~~~LkEiP~g~WfCp~~C~~I~~ 868 (1088)
.|.+|...+ -.-.|..++...|+.|...||..|+.... | -|| .|.++..
T Consensus 513 iCe~Cq~~~-iiyPF~~~~~~rC~~C~avfH~~C~~r~s-------~----~CP-rC~R~q~ 561 (580)
T KOG1829|consen 513 ICELCQHND-IIYPFETRNTRRCSTCLAVFHKKCLRRKS-------P----CCP-RCERRQK 561 (580)
T ss_pred eeeeccCCC-cccccccccceeHHHHHHHHHHHHHhccC-------C----CCC-chHHHHH
Confidence 367774332 22357678899999999999999998421 1 176 6887655
No 165
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=35.30 E-value=28 Score=42.75 Aligned_cols=47 Identities=28% Similarity=0.359 Sum_probs=38.5
Q ss_pred cccccccccccCCceEecCCCCCccccccCCCC-CCC--CCCcccccccc
Q 001383 715 ENDDLCGICMDGGDLLCCDSCPRAFHIDCVSLP-GIP--SGTWHCRYCMN 761 (1088)
Q Consensus 715 ~ndd~C~VC~dgGeLl~CD~C~rafH~~Cl~~~-~vP--~G~W~C~~C~~ 761 (1088)
..+-+|.-|.-.|..+-|+.|-|.||..|+.+. ..+ ...|.|+.|..
T Consensus 58 N~d~~cfechlpg~vl~c~vc~Rs~h~~c~sp~~q~r~~s~p~~~p~p~s 107 (588)
T KOG3612|consen 58 NIDPFCFECHLPGAVLKCIVCHRSFHENCQSPDPQKRNYSVPSDKPQPYS 107 (588)
T ss_pred CCCcccccccCCcceeeeehhhccccccccCcchhhccccccccCCcccc
Confidence 345589999999999999999999999999755 333 45699988874
No 166
>PLN03239 histone acetyltransferase; Provisional
Probab=34.81 E-value=52 Score=38.75 Aligned_cols=32 Identities=22% Similarity=0.116 Sum_probs=24.8
Q ss_pred EEeeeeeccCcccCChhHHHHHHHHHHhhhcC
Q 001383 993 ELPLVATSNDCQGQGYFQSLFCCIEKLLGFLN 1024 (1088)
Q Consensus 993 Eip~VAT~~~~RgqG~gr~L~~aIE~~L~~lg 1024 (1088)
-|--|-|.|.||++|||+.||+.-=.+.+.-|
T Consensus 215 NLaCIltLPpyQrkGyG~lLI~fSYeLSr~Eg 246 (351)
T PLN03239 215 NLACILTFPAHQRKGYGRFLIAFSYELSKKEE 246 (351)
T ss_pred ceEEEEecChhhhcchhhhhHhhhhHhhhhcC
Confidence 36678999999999999999987655544433
No 167
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=34.36 E-value=21 Score=33.06 Aligned_cols=29 Identities=34% Similarity=0.938 Sum_probs=25.1
Q ss_pred cccccccccC-CceEecCC--CCCccccccCC
Q 001383 717 DDLCGICMDG-GDLLCCDS--CPRAFHIDCVS 745 (1088)
Q Consensus 717 dd~C~VC~dg-GeLl~CD~--C~rafH~~Cl~ 745 (1088)
...|.+|+.. |-.+-|.. |.+.||..|.-
T Consensus 36 ~~~C~~C~~~~Ga~i~C~~~~C~~~fH~~CA~ 67 (90)
T PF13771_consen 36 KLKCSICKKKGGACIGCSHPGCSRSFHVPCAR 67 (90)
T ss_pred CCCCcCCCCCCCeEEEEeCCCCCcEEChHHHc
Confidence 3579999988 98888874 99999999985
No 168
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=33.76 E-value=11 Score=36.99 Aligned_cols=52 Identities=25% Similarity=0.726 Sum_probs=33.0
Q ss_pred CcceeccCCCCCCCCCCCcceeec------CCC---CCcCCCCCCCCCCCCCc-ccCCCCCcccCCCchh
Q 001383 806 GGCVLCRGRDFCKSRFGRRTVILC------DQC---EREYHVGCLKDHGMEDL-QELPKGKWLCCADCKR 865 (1088)
Q Consensus 806 ~~C~vCk~~d~sksgf~~g~LL~C------DqC---~raYHv~CL~p~g~~~L-kEiP~g~WfCp~~C~~ 865 (1088)
..|+.|++... +..+.| ..| ...|-..||...--.++ .-+...+|.|| .|..
T Consensus 8 ~~CHqCrqKt~-------~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP-~Crg 69 (105)
T PF10497_consen 8 KTCHQCRQKTL-------DFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCP-KCRG 69 (105)
T ss_pred CCchhhcCCCC-------CCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECC-CCCC
Confidence 35999988543 223556 566 88999999876422222 23446789998 4544
No 169
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=33.73 E-value=44 Score=43.89 Aligned_cols=47 Identities=36% Similarity=0.962 Sum_probs=37.6
Q ss_pred ccccccccccCC--ceEecCCCCCccccccCCC--CCCCCCCccccccccc
Q 001383 716 NDDLCGICMDGG--DLLCCDSCPRAFHIDCVSL--PGIPSGTWHCRYCMNT 762 (1088)
Q Consensus 716 ndd~C~VC~dgG--eLl~CD~C~rafH~~Cl~~--~~vP~G~W~C~~C~~~ 762 (1088)
....|..|..+. .++.|++|...||..|..+ +.+++|.|.|+.|...
T Consensus 154 ~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (904)
T KOG1246|consen 154 DYPQCNTCSKGKEEKLLLCDSCDDSYHTYCLRPPLTRVPDGDWRCPKCIPT 204 (904)
T ss_pred cchhhhccccCCCccceecccccCcccccccCCCCCcCCcCcccCCccccc
Confidence 345788888655 3349999999999999974 4788999999999754
No 170
>cd00024 CHROMO Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence implicates the chromo domain in the binding activity of these proteins to methylated histone tails and maybe RNA. May occur as single instance, in a tandem arrangement or followd by a related "chromo shadow" domain.
Probab=33.38 E-value=26 Score=29.15 Aligned_cols=22 Identities=9% Similarity=0.178 Sum_probs=18.1
Q ss_pred ccccceeeEEecCCccCCCchh
Q 001383 901 AVDFDVRWRVLRGKKVDASDGT 922 (1088)
Q Consensus 901 ~~e~~VkWqlLSy~~~s~~~e~ 922 (1088)
..+|.|+|+++++.+++|.+..
T Consensus 19 ~~~y~VkW~g~~~~~~tWe~~~ 40 (55)
T cd00024 19 EYEYLVKWKGYSYSEDTWEPEE 40 (55)
T ss_pred cEEEEEEECCCCCccCccccHH
Confidence 4689999999999999984443
No 171
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=33.17 E-value=31 Score=37.42 Aligned_cols=35 Identities=26% Similarity=0.717 Sum_probs=28.6
Q ss_pred cceeccCCCCCCCCCCCcceeecCCCCCcCCCCCCC
Q 001383 807 GCVLCRGRDFCKSRFGRRTVILCDQCEREYHVGCLK 842 (1088)
Q Consensus 807 ~C~vCk~~d~sksgf~~g~LL~CDqC~raYHv~CL~ 842 (1088)
.|.+|+..+. .-.|.....+.|..|...||..|..
T Consensus 154 iCe~C~~~~~-IfPF~~~~~~~C~~C~~v~H~~C~~ 188 (202)
T PF13901_consen 154 ICEICNSDDI-IFPFQIDTTVRCPKCKSVFHKSCFR 188 (202)
T ss_pred CCccCCCCCC-CCCCCCCCeeeCCcCccccchhhcC
Confidence 3999987642 2367777899999999999999997
No 172
>PF01233 NMT: Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain; InterPro: IPR022676 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the N-terminal region. ; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 4A33_A 3H5Z_A 4A2Z_A 2WSA_A ....
Probab=32.85 E-value=1.2e+02 Score=32.38 Aligned_cols=61 Identities=10% Similarity=0.181 Sum_probs=45.2
Q ss_pred eEEEEEEe--CCEEEE-----EEEEEEecC--ceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccE
Q 001383 967 MYCAILTV--NQVVVS-----AGIFRIFGQ--ELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKT 1027 (1088)
Q Consensus 967 fY~~VL~~--~~evVs-----aA~lri~g~--~~AEip~VAT~~~~RgqG~gr~L~~aIE~~L~~lgV~~ 1027 (1088)
.|.+.++. .+++|| -+.+||.+. ..+||=++.+++.+|.+++.=.|+..|=+.+...||-.
T Consensus 77 ~whiGVR~~~~~kLvgfIsaip~~irv~~~~~~~~eINFLCVhKklRskrlAPvLIkEItRRvn~~gI~q 146 (162)
T PF01233_consen 77 EWHIGVRVKSSKKLVGFISAIPATIRVRDKVIKMVEINFLCVHKKLRSKRLAPVLIKEITRRVNLQGIWQ 146 (162)
T ss_dssp GGEEEEEETTTTEEEEEEEEEEEEEEETTEEEEEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHHTTT--E
T ss_pred ceEEEEEECCCCEEEEEEccceEEEEEeeeEeeeeeEEEEeecHhHhhcCCcHHHHHHHHHHhhhcCcee
Confidence 34444443 355555 356778775 69999999999999999999999999999988888754
No 173
>PF04958 AstA: Arginine N-succinyltransferase beta subunit; InterPro: IPR007041 Arginine N-succinyltransferase catalyses the transfer of succinyl-CoA to arginine to produce succinylarginine. This is the first step in arginine catabolism via the arginine succinyltransferase pathway. Six major L-arginine-degrading pathways have been described for prokaryotes []. Many bacteria arginine succinyltransferase 2.3.1.109 from EC, which is the AstA protein of the succinyltransferase (ast) pathway operon consists of five genes. In a few species, such as Pseudomonas aeruginosa, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST). This entry represents the family of proteins that make up the beta subunit of the heterodimer of Ast and AOST.; GO: 0008791 arginine N-succinyltransferase activity, 0006527 arginine catabolic process; PDB: 1YLE_A.
Probab=31.79 E-value=59 Score=38.30 Aligned_cols=109 Identities=15% Similarity=0.077 Sum_probs=58.7
Q ss_pred CchhhHHHHHHHHhhhhcc-CcccccCcCCCccccccccccCCCcceeceEEEEEEe--CCEEEEEEEEEEe--------
Q 001383 919 SDGTRALLSKAVSIFHDRF-DPIIESASKLDLIPAMVYGRSHRGQDYHGMYCAILTV--NQVVVSAGIFRIF-------- 987 (1088)
Q Consensus 919 ~~e~~~~LavAl~If~EcF-dPIiD~~Sg~DLIp~MVYg~~~~rl~f~GfY~~VL~~--~~evVsaA~lri~-------- 987 (1088)
.|.+...|..-++-=.++| ....+.. -.-.|.+||+. .|+|||++.|..-
T Consensus 29 LP~d~~~L~~rI~~S~~sFa~~~~~~~-------------------~~~~YlfVLED~~tg~vvGts~I~a~vG~~~PfY 89 (342)
T PF04958_consen 29 LPPDREALAERIERSERSFAGRDVDFP-------------------GDEGYLFVLEDTETGEVVGTSAIEAAVGLDEPFY 89 (342)
T ss_dssp S-S-HHHHHHHHHHHHHHHH-TT-----------------------S--EEEEEEEETTT--EEEEEEEESSTTSSS---
T ss_pred CCCCHHHHHHHHHHHHHHhhccccCCC-------------------CccceEEEEEecCCCcEEEEEeEEeccCCCCCcE
Confidence 4566666666666556666 2332110 12359999995 5999999976422
Q ss_pred ----------------------------cCceEEEeeeeeccCcccCChhHHHHHHHHHH---hhhcCccEEEec----C
Q 001383 988 ----------------------------GQELAELPLVATSNDCQGQGYFQSLFCCIEKL---LGFLNVKTLVLP----S 1032 (1088)
Q Consensus 988 ----------------------------g~~~AEip~VAT~~~~RgqG~gr~L~~aIE~~---L~~lgV~~LvLp----A 1032 (1088)
-.+-.||-.+=.+++||+-|.|+.|-.+=-=. -++.=-++++.- .
T Consensus 90 ~yr~~~~vh~S~~L~v~~~~~~L~L~~d~tG~sEl~tLfL~p~~R~~~~G~lLSr~RfLFiA~~~~rF~~~viAElrG~~ 169 (342)
T PF04958_consen 90 SYRVSTLVHASRELGVRNRHETLTLSNDYTGCSELCTLFLDPDYRGGGNGRLLSRSRFLFIAQHRERFADRVIAELRGVS 169 (342)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEEE-TTTTSEEEEEEEE-GGGTTSHHHHHHHHHHHHHHHH-GGGS-SEEEEE--B--
T ss_pred EEEcCceeEcCcccCCccceeeEeeecCCCCCeeeEEEEECHHHcCCchHHHHHHHHHHHHHhChhhcchheeeeccCCc
Confidence 14678999999999999999998885442211 111112344431 1
Q ss_pred -hhhhHHHHHhccCcE
Q 001383 1033 -ASEAQAIWTNKFGFS 1047 (1088)
Q Consensus 1033 -~~eA~~~w~~kfGF~ 1047 (1088)
..--.|||.. +|-+
T Consensus 170 De~G~SPFWda-lG~~ 184 (342)
T PF04958_consen 170 DEDGRSPFWDA-LGRH 184 (342)
T ss_dssp -TT---HHHHH-TGGG
T ss_pred CCCCCCchHHH-hhcc
Confidence 1234699998 6633
No 174
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=30.75 E-value=52 Score=40.03 Aligned_cols=82 Identities=16% Similarity=0.105 Sum_probs=45.2
Q ss_pred HHHHHHHHhhhhccCcccccCcCCCccccccccccCCCcceeceEEEEEEe--CCEEEEEEEEEEecCceEEEeeeeecc
Q 001383 924 ALLSKAVSIFHDRFDPIIESASKLDLIPAMVYGRSHRGQDYHGMYCAILTV--NQVVVSAGIFRIFGQELAELPLVATSN 1001 (1088)
Q Consensus 924 ~~LavAl~If~EcFdPIiD~~Sg~DLIp~MVYg~~~~rl~f~GfY~~VL~~--~~evVsaA~lri~g~~~AEip~VAT~~ 1001 (1088)
....+-|-+|-..| .|.+|- | -+.+.--||++.-.. +-.+||-=+=--.-.+---|--|-|.|
T Consensus 252 ~~yCqnLcLlaKLF---LdhKtl--------y----ydV~~FlFYvl~e~d~~g~h~vGyFSKEk~s~~~~NLaCIltlP 316 (450)
T PLN00104 252 KVYCQNLCYLAKLF---LDHKTL--------Y----YDVDLFLFYVLCECDDRGCHMVGYFSKEKHSEEDYNLACILTLP 316 (450)
T ss_pred hhHHHHHHHHHHHh---hcCcce--------e----ccccceEEEEEEEecCCCcEEEEEecccccCcCCCceEEEEecc
Confidence 45678888888888 445442 1 112223344443221 224444222111111112366789999
Q ss_pred CcccCChhHHHHHHHHHHh
Q 001383 1002 DCQGQGYFQSLFCCIEKLL 1020 (1088)
Q Consensus 1002 ~~RgqG~gr~L~~aIE~~L 1020 (1088)
.||++|||+.||+.-=.+.
T Consensus 317 ~yQrkGyG~~LI~~SYeLS 335 (450)
T PLN00104 317 PYQRKGYGKFLIAFSYELS 335 (450)
T ss_pred hhhhcchhheehhheehhh
Confidence 9999999999997654443
No 175
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=30.08 E-value=42 Score=42.69 Aligned_cols=29 Identities=17% Similarity=0.211 Sum_probs=25.2
Q ss_pred EEEeeeeeccCcccCChhHHHHHHHHHHh
Q 001383 992 AELPLVATSNDCQGQGYFQSLFCCIEKLL 1020 (1088)
Q Consensus 992 AEip~VAT~~~~RgqG~gr~L~~aIE~~L 1020 (1088)
|.|-+|||+|+|++-|||.+-++-+.+..
T Consensus 615 aRIVRIAvhP~y~~MGYGsrAvqLL~~y~ 643 (1011)
T KOG2036|consen 615 ARIVRIAVHPEYQKMGYGSRAVQLLTDYF 643 (1011)
T ss_pred ceEEEEEeccchhccCccHHHHHHHHHHH
Confidence 56778999999999999999888877764
No 176
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=29.41 E-value=13 Score=28.69 Aligned_cols=41 Identities=24% Similarity=0.532 Sum_probs=27.4
Q ss_pred ccccccCC-ceEecCCCCCccccccCCCCCCCCCCcccccccc
Q 001383 720 CGICMDGG-DLLCCDSCPRAFHIDCVSLPGIPSGTWHCRYCMN 761 (1088)
Q Consensus 720 C~VC~dgG-eLl~CD~C~rafH~~Cl~~~~vP~G~W~C~~C~~ 761 (1088)
|.+|.+.- ..+.-..|...||..|+.... ..+...||.|+.
T Consensus 2 C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~-~~~~~~Cp~C~~ 43 (45)
T cd00162 2 CPICLEEFREPVVLLPCGHVFCRSCIDKWL-KSGKNTCPLCRT 43 (45)
T ss_pred CCcCchhhhCceEecCCCChhcHHHHHHHH-HhCcCCCCCCCC
Confidence 77887653 444455699999999986211 115677998874
No 177
>TIGR03244 arg_catab_AstA arginine N-succinyltransferase. In many bacteria, the arginine succinyltransferase (ast) pathway operon consists of five genes, including this protein, arginine N-succinyltransferase (EC 2.3.1.109). In a few species, such as Pseudomonas aeruginosa, the member of this family is encoded adjacent to a paralog, and the two polypeptides form a heterodimeric enzyme, active on both arginine and ornithine. In such species, this polypeptide may be treated as the beta subunit of an enzyme that may be named either arginine N-succinyltransferase (AST) or arginine and orthithine N-succinyltransferase (AOST).
Probab=29.01 E-value=91 Score=36.72 Aligned_cols=49 Identities=18% Similarity=0.099 Sum_probs=39.4
Q ss_pred ceEEEEEEe--CCEEEEEEEEEEe-c-----------------------------------CceEEEeeeeeccCcccCC
Q 001383 966 GMYCAILTV--NQVVVSAGIFRIF-G-----------------------------------QELAELPLVATSNDCQGQG 1007 (1088)
Q Consensus 966 GfY~~VL~~--~~evVsaA~lri~-g-----------------------------------~~~AEip~VAT~~~~RgqG 1007 (1088)
--|.+||+. .|+|||++.|..- | .+..||-.+-.+++||+-|
T Consensus 54 ~~YlFVLEDt~tg~vvGts~I~a~vG~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~SElctLfL~p~~R~~~ 133 (336)
T TIGR03244 54 QGYLFVLEDTETGTVAGVSAIEAAVGLEEPFYNYRVGTVVHASKELGIYKALETLFLSNDLTGYSELCTLFLDPDYRKGG 133 (336)
T ss_pred ccEEEEEEeCCCCeEEEEEeEEecccCCCCCEEEEcCceeecCcccCCceeeeeEEeeccCCCCeeeEEEEECHHHcCCc
Confidence 468899986 5899999987543 1 4578999999999999999
Q ss_pred hhHHHHH
Q 001383 1008 YFQSLFC 1014 (1088)
Q Consensus 1008 ~gr~L~~ 1014 (1088)
.|+.|-.
T Consensus 134 ~G~LLSr 140 (336)
T TIGR03244 134 NGRLLSK 140 (336)
T ss_pred chhhHHH
Confidence 9987754
No 178
>TIGR03245 arg_AOST_alph arginine/ornithine succinyltransferase, alpha subunit. In some bacteria, including Pseudomonas aeruginosa, the astB gene (arginine N-succinyltransferase) is replaced by tandem paralogs that form a heterodimer. This heterodimer from P. aeruginosa is characterized as arginine and ornithine N-2 succinyltransferase (AOST). Members of this protein family represent the less widespread paralog, designated AruI, or arginine/ornithine succinyltransferase, alpha subunit.
Probab=28.11 E-value=90 Score=36.74 Aligned_cols=49 Identities=10% Similarity=-0.050 Sum_probs=39.4
Q ss_pred ceEEEEEEe--CCEEEEEEEEEEe-c-----------------------------------CceEEEeeeeeccCcccCC
Q 001383 966 GMYCAILTV--NQVVVSAGIFRIF-G-----------------------------------QELAELPLVATSNDCQGQG 1007 (1088)
Q Consensus 966 GfY~~VL~~--~~evVsaA~lri~-g-----------------------------------~~~AEip~VAT~~~~RgqG 1007 (1088)
-.|.+||+. .|+|||++.|..- | .+..||-.+-.+++||+-|
T Consensus 55 ~~YlFVLEDt~tg~vvGts~I~a~vG~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfL~p~~R~~~ 134 (336)
T TIGR03245 55 ERYLFVLEDTETGKLLGTSSIVASAGYGEPFYSYRNDTLIHASRELKVNNKIHVLYMCHELTGSSLLCSFYVDPRLRKTE 134 (336)
T ss_pred ccEEEEEEeCCCCcEEEEEeEEecccCCCCCEEEEcCceeecCcccCCccceeeEEeeccCCCCeeeEEEEECHHHcCCC
Confidence 468899994 5899999987543 1 4578999999999999999
Q ss_pred hhHHHHH
Q 001383 1008 YFQSLFC 1014 (1088)
Q Consensus 1008 ~gr~L~~ 1014 (1088)
.|+.|-.
T Consensus 135 ~G~lLSr 141 (336)
T TIGR03245 135 AAELLSR 141 (336)
T ss_pred chhHHHH
Confidence 9887744
No 179
>TIGR03243 arg_catab_AOST arginine and ornithine succinyltransferase subunits. In many bacteria, the sole member of this protein family is arginine N-succinyltransferase (EC 2.3.1.109), the AstA protein of the arginine succinyltransferase (ast) pathway. However, in Pseudomonas aeruginosa and several other species, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST).
Probab=27.77 E-value=94 Score=36.57 Aligned_cols=49 Identities=18% Similarity=0.091 Sum_probs=39.5
Q ss_pred ceEEEEEEe--CCEEEEEEEEEEe-c-----------------------------------CceEEEeeeeeccCcccCC
Q 001383 966 GMYCAILTV--NQVVVSAGIFRIF-G-----------------------------------QELAELPLVATSNDCQGQG 1007 (1088)
Q Consensus 966 GfY~~VL~~--~~evVsaA~lri~-g-----------------------------------~~~AEip~VAT~~~~RgqG 1007 (1088)
-.|.+||+. .|+|||++.|..- | .+..||-.+-.+++||+-|
T Consensus 54 ~~YlFVLED~~tg~vvGts~I~a~vG~~~PfY~yrv~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfL~p~~R~~~ 133 (335)
T TIGR03243 54 EGYLFVLEDTETGTVAGVSAIEAAVGLDEPFYNYRVGTLVHASRELGVYNKIPTLTLSNDLTGSSELCTLFLDPDYRKGG 133 (335)
T ss_pred ccEEEEEEeCCCCeEEEEEeEEecccCCCCCEEEEcCceeecCcccCCccceeeEEeeccCCCCeeeEEEEECHHHcCCC
Confidence 568899995 5899999987543 1 4578999999999999999
Q ss_pred hhHHHHH
Q 001383 1008 YFQSLFC 1014 (1088)
Q Consensus 1008 ~gr~L~~ 1014 (1088)
.|+.|-.
T Consensus 134 ~G~LLSr 140 (335)
T TIGR03243 134 NGRLLSR 140 (335)
T ss_pred chhhHHH
Confidence 9987744
No 180
>PRK10456 arginine succinyltransferase; Provisional
Probab=27.34 E-value=91 Score=36.83 Aligned_cols=49 Identities=18% Similarity=0.093 Sum_probs=39.2
Q ss_pred ceEEEEEEe--CCEEEEEEEEEEe-c-----------------------------------CceEEEeeeeeccCcccCC
Q 001383 966 GMYCAILTV--NQVVVSAGIFRIF-G-----------------------------------QELAELPLVATSNDCQGQG 1007 (1088)
Q Consensus 966 GfY~~VL~~--~~evVsaA~lri~-g-----------------------------------~~~AEip~VAT~~~~RgqG 1007 (1088)
..|.+||+. .|+|||++.|..- | .+..||-.+-.+++||+-|
T Consensus 56 ~~YlFVLED~~tg~vvGts~I~a~vG~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfl~p~~R~~~ 135 (344)
T PRK10456 56 QGYVFVLEDSETGTVAGICAIEVAVGLNDPWYNYRVGTLVHASKELNVYNALPTLFLSNDHTGSSELCTLFLDPDWRKEG 135 (344)
T ss_pred ccEEEEEEeCCCCcEEEEEeEEecccCCCCCEEEEcCceeecCcccCCceeeeeEEeeccCCCCceeEEEEECHHHcCCC
Confidence 468899995 5899999987543 1 4578999999999999999
Q ss_pred hhHHHHH
Q 001383 1008 YFQSLFC 1014 (1088)
Q Consensus 1008 ~gr~L~~ 1014 (1088)
.|+.|-.
T Consensus 136 ~G~LLSr 142 (344)
T PRK10456 136 NGYLLSK 142 (344)
T ss_pred chhHHHH
Confidence 9887744
No 181
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=27.26 E-value=29 Score=31.54 Aligned_cols=34 Identities=24% Similarity=0.730 Sum_probs=13.1
Q ss_pred cceeccCCCCCCCCCCCcceeecC--CCCCcCCCCCCCC
Q 001383 807 GCVLCRGRDFCKSRFGRRTVILCD--QCEREYHVGCLKD 843 (1088)
Q Consensus 807 ~C~vCk~~d~sksgf~~g~LL~CD--qC~raYHv~CL~p 843 (1088)
.|.+|...-. ..+....+.|+ .|...||..||..
T Consensus 4 ~C~IC~~~~~---~~~~~p~~~C~n~~C~~~fH~~CL~~ 39 (70)
T PF11793_consen 4 ECGICYSYRL---DDGEIPDVVCPNPSCGKKFHLLCLSE 39 (70)
T ss_dssp S-SSS--SS----TT-----B--S-TT----B-SGGGHH
T ss_pred CCCcCCcEec---CCCCcCceEcCCcccCCHHHHHHHHH
Confidence 4899987422 11223468998 9999999999974
No 182
>smart00298 CHROMO Chromatin organization modifier domain.
Probab=27.14 E-value=45 Score=27.51 Aligned_cols=24 Identities=8% Similarity=0.191 Sum_probs=18.9
Q ss_pred ccccceeeEEecCCccCCCchhhH
Q 001383 901 AVDFDVRWRVLRGKKVDASDGTRA 924 (1088)
Q Consensus 901 ~~e~~VkWqlLSy~~~s~~~e~~~ 924 (1088)
...|.|+|.++++.+++|.+....
T Consensus 17 ~~~ylVkW~g~~~~~~tW~~~~~l 40 (55)
T smart00298 17 ELEYLVKWKGYSYSEDTWEPEENL 40 (55)
T ss_pred cEEEEEEECCCCCccCceeeHHHH
Confidence 457999999999999998544433
No 183
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=26.96 E-value=25 Score=42.34 Aligned_cols=42 Identities=19% Similarity=0.471 Sum_probs=28.2
Q ss_pred cccccccccc---CC-ceEecCCCCCccccccCCCCCCCCCCcccccccc
Q 001383 716 NDDLCGICMD---GG-DLLCCDSCPRAFHIDCVSLPGIPSGTWHCRYCMN 761 (1088)
Q Consensus 716 ndd~C~VC~d---gG-eLl~CD~C~rafH~~Cl~~~~vP~G~W~C~~C~~ 761 (1088)
.-..|.||.. .. ..+.=--|..+||-.|+.. + ++-.||.|+.
T Consensus 174 ELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~--w--~~~scpvcR~ 219 (493)
T KOG0804|consen 174 ELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMK--W--WDSSCPVCRY 219 (493)
T ss_pred cCCCcchhHhhcCccccceeeeecccccchHHHhh--c--ccCcChhhhh
Confidence 4468999983 22 3344456899999999962 1 2346888874
No 184
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]
Probab=25.88 E-value=11 Score=45.10 Aligned_cols=35 Identities=29% Similarity=0.858 Sum_probs=26.0
Q ss_pred ccccccccC--CceEecCCCCCccccccCCCCCCCCCCccccccccc
Q 001383 718 DLCGICMDG--GDLLCCDSCPRAFHIDCVSLPGIPSGTWHCRYCMNT 762 (1088)
Q Consensus 718 d~C~VC~dg--GeLl~CD~C~rafH~~Cl~~~~vP~G~W~C~~C~~~ 762 (1088)
..|.-|+.+ |+-.-|..=++.||..|.. |..|...
T Consensus 275 ~iC~~C~K~V~g~~~ac~Am~~~fHv~CFt----------C~~C~r~ 311 (468)
T KOG1701|consen 275 GICAFCHKTVSGQGLAVEAMDQLFHVQCFT----------CRTCRRQ 311 (468)
T ss_pred hhhhhcCCcccCcchHHHHhhhhhccccee----------hHhhhhh
Confidence 379999864 6666677788999998875 6667643
No 185
>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein. p62 binds directly to the Arp1 subunit of dynactin [, ].
Probab=25.35 E-value=57 Score=40.03 Aligned_cols=32 Identities=25% Similarity=0.604 Sum_probs=24.4
Q ss_pred ceEecCCCCCccccccCCCCCCCCCCccccccccc
Q 001383 728 DLLCCDSCPRAFHIDCVSLPGIPSGTWHCRYCMNT 762 (1088)
Q Consensus 728 eLl~CD~C~rafH~~Cl~~~~vP~G~W~C~~C~~~ 762 (1088)
+|.||..|...=+..|+.... ..|||+.|...
T Consensus 4 ~L~fC~~C~~irc~~c~~~Ei---~~~yCp~CL~~ 35 (483)
T PF05502_consen 4 ELYFCEHCHKIRCPRCVSEEI---DSYYCPNCLFE 35 (483)
T ss_pred cceecccccccCChhhccccc---ceeECcccccc
Confidence 588999998887778875322 37999999854
No 186
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=25.00 E-value=21 Score=37.63 Aligned_cols=50 Identities=24% Similarity=0.471 Sum_probs=34.2
Q ss_pred ccccccccccccCCceE--e--cCCCCCccccccCCCCCCCCCCcccccccccc
Q 001383 714 KENDDLCGICMDGGDLL--C--CDSCPRAFHIDCVSLPGIPSGTWHCRYCMNTF 763 (1088)
Q Consensus 714 ~~ndd~C~VC~dgGeLl--~--CD~C~rafH~~Cl~~~~vP~G~W~C~~C~~~~ 763 (1088)
...+..|.+|.++++.. . |.+-....|..|+.-.-..++...|+.|..++
T Consensus 5 s~~~~~CRIC~~~~~~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y 58 (162)
T PHA02825 5 SLMDKCCWICKDEYDVVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPY 58 (162)
T ss_pred CCCCCeeEecCCCCCCccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeE
Confidence 34567899999765321 1 44555678999997333345788999998754
No 187
>PHA02862 5L protein; Provisional
Probab=24.89 E-value=18 Score=37.75 Aligned_cols=48 Identities=29% Similarity=0.527 Sum_probs=34.6
Q ss_pred cccccccccCCce--Ee--cCCCCCccccccCCCCCCCCCCccccccccccc
Q 001383 717 DDLCGICMDGGDL--LC--CDSCPRAFHIDCVSLPGIPSGTWHCRYCMNTFQ 764 (1088)
Q Consensus 717 dd~C~VC~dgGeL--l~--CD~C~rafH~~Cl~~~~vP~G~W~C~~C~~~~~ 764 (1088)
++.|.+|.++++- -. |-+-.+-.|+.|+.-.--+++.-+|+.|+.++.
T Consensus 2 ~diCWIC~~~~~e~~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~ 53 (156)
T PHA02862 2 SDICWICNDVCDERNNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN 53 (156)
T ss_pred CCEEEEecCcCCCCcccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence 4789999976532 22 567789999999973334567789999997653
No 188
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=23.11 E-value=20 Score=44.68 Aligned_cols=34 Identities=15% Similarity=0.249 Sum_probs=26.1
Q ss_pred ccceecccCCccccc-------ccccccccccccccccccC
Q 001383 517 KANFCLNCRVSFSNA-------GVEELMLLCKSCVELKESQ 550 (1088)
Q Consensus 517 ~l~~C~~Cp~sfh~~-------c~~~g~w~C~~C~~~k~s~ 550 (1088)
..++|.+|..+++.. |-=.|..||+.|...-.+.
T Consensus 339 Q~~~CAgC~~~i~~~~~~~~R~C~y~G~y~C~~Ch~~~~sv 379 (580)
T KOG1829|consen 339 QNFRCAGCGHTIGPDLEQRPRLCRYLGKYFCDCCHQNDKSV 379 (580)
T ss_pred cCceecccCCCcccccccchhHhhhhhhhhCchhcccCccc
Confidence 578999999999843 4448889999886665554
No 189
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=22.57 E-value=17 Score=34.37 Aligned_cols=29 Identities=24% Similarity=0.414 Sum_probs=19.7
Q ss_pred CCCCCccccccCCCCCCCCCCcccccccccc
Q 001383 733 DSCPRAFHIDCVSLPGIPSGTWHCRYCMNTF 763 (1088)
Q Consensus 733 D~C~rafH~~Cl~~~~vP~G~W~C~~C~~~~ 763 (1088)
..|..+||..|+. .+-+..-.||.+++.+
T Consensus 52 G~CnHaFH~HCI~--rWL~Tk~~CPld~q~w 80 (88)
T COG5194 52 GVCNHAFHDHCIY--RWLDTKGVCPLDRQTW 80 (88)
T ss_pred EecchHHHHHHHH--HHHhhCCCCCCCCcee
Confidence 3589999999986 1111255788888654
No 190
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=22.45 E-value=16 Score=27.16 Aligned_cols=26 Identities=23% Similarity=0.585 Sum_probs=18.7
Q ss_pred ccccccCCceEecCCCCCccccccCC
Q 001383 720 CGICMDGGDLLCCDSCPRAFHIDCVS 745 (1088)
Q Consensus 720 C~VC~dgGeLl~CD~C~rafH~~Cl~ 745 (1088)
|.+|.+......-..|...||..|+.
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~ 26 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIR 26 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHH
Confidence 56777665444455688899999985
No 191
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.40 E-value=44 Score=39.39 Aligned_cols=46 Identities=26% Similarity=0.713 Sum_probs=30.9
Q ss_pred CcceeccCCCCCCCCCCCcceeecCCCCCcCCCCCCCCCCCCCcccCCCCCcccCCCchh
Q 001383 806 GGCVLCRGRDFCKSRFGRRTVILCDQCEREYHVGCLKDHGMEDLQELPKGKWLCCADCKR 865 (1088)
Q Consensus 806 ~~C~vCk~~d~sksgf~~g~LL~CDqC~raYHv~CL~p~g~~~LkEiP~g~WfCp~~C~~ 865 (1088)
..|++|-+ +| ..|..+.=--|...||..|+++. |. ...=+|| -|+.
T Consensus 230 ~~CaIClE-dY-----~~GdklRiLPC~H~FH~~CIDpW----L~---~~r~~CP-vCK~ 275 (348)
T KOG4628|consen 230 DTCAICLE-DY-----EKGDKLRILPCSHKFHVNCIDPW----LT---QTRTFCP-VCKR 275 (348)
T ss_pred ceEEEeec-cc-----ccCCeeeEecCCCchhhccchhh----Hh---hcCccCC-CCCC
Confidence 37999988 33 33444444689999999999863 21 1233797 6876
No 192
>KOG2779 consensus N-myristoyl transferase [Lipid transport and metabolism]
Probab=21.59 E-value=3.1e+02 Score=32.82 Aligned_cols=127 Identities=13% Similarity=0.244 Sum_probs=84.9
Q ss_pred ceeeEEecCCccCCCchhhHHHHHHHHhhhhccCcccccCcCCCcccccccccc-----CCCcceeceEEEEEEeCC--E
Q 001383 905 DVRWRVLRGKKVDASDGTRALLSKAVSIFHDRFDPIIESASKLDLIPAMVYGRS-----HRGQDYHGMYCAILTVNQ--V 977 (1088)
Q Consensus 905 ~VkWqlLSy~~~s~~~e~~~~LavAl~If~EcFdPIiD~~Sg~DLIp~MVYg~~-----~~rl~f~GfY~~VL~~~~--e 977 (1088)
.+.|.-+- + .+...|......+.|-+--- .|..--.-|..+ +..-++.--|++.++..+ +
T Consensus 80 gf~W~tld---v----~~~~~l~el~~lL~enyVEd------~~~m~rf~Ys~eFl~Wal~~pg~~~~WHiGVRv~~s~k 146 (421)
T KOG2779|consen 80 GFRWETLD---V----SDFKDLEELYNLLNENYVED------DDSMFRFDYSPEFLKWALQPPGWKKEWHIGVRVKSSKK 146 (421)
T ss_pred CceeeccC---C----ccHhHHHHHHhhcccCCCCc------cccchhhhccHHHHHhhhcCCCCccceEEEEEEecCCc
Confidence 57777763 2 22334566666777765222 222333334433 233445556777777664 6
Q ss_pred EEEE-----EEEEEecC--ceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCcc------EEEecChhhhHHHHHhcc
Q 001383 978 VVSA-----GIFRIFGQ--ELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVK------TLVLPSASEAQAIWTNKF 1044 (1088)
Q Consensus 978 vVsa-----A~lri~g~--~~AEip~VAT~~~~RgqG~gr~L~~aIE~~L~~lgV~------~LvLpA~~eA~~~w~~kf 1044 (1088)
+|+- ++|||.+. ..+||-++.+++..|++++.=.|+..|=+...--||- -++||+-...-.-|.++|
T Consensus 147 LVaFIsaiP~~irvrdk~vk~veINFLCVHKkLRSKRlaPvLIrEITRRvnl~gIfqA~yTaGvvLp~PVstcRY~HRsL 226 (421)
T KOG2779|consen 147 LVAFISAIPATIRVRDKVVKMVEINFLCVHKKLRSKRLAPVLIREITRRVNLEGIFQAAYTAGVVLPKPVSTCRYWHRSL 226 (421)
T ss_pred eEEEEeccccEEEEccceeeeeeEEEEEEehhhhccccccHHHHHHHHHhhhhhhhhHhhhcceeeccccchhhhhhccC
Confidence 6653 57888886 6899999999999999999999999998876555553 467888777777787743
No 193
>COG5027 SAS2 Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=21.53 E-value=44 Score=39.26 Aligned_cols=76 Identities=17% Similarity=0.179 Sum_probs=42.7
Q ss_pred hHHHHHHHHhhhhccCcccccCcCCCccccccccccCCCcceeceEEEEEEeCCE----EEEEEEEEEecCceEEEeeee
Q 001383 923 RALLSKAVSIFHDRFDPIIESASKLDLIPAMVYGRSHRGQDYHGMYCAILTVNQV----VVSAGIFRIFGQELAELPLVA 998 (1088)
Q Consensus 923 ~~~LavAl~If~EcFdPIiD~~Sg~DLIp~MVYg~~~~rl~f~GfY~~VL~~~~e----vVsaA~lri~g~~~AEip~VA 998 (1088)
+..+.+-+-.|..+| +|++| +| +|..+|--+||+..|. +||-=+=--...+---+--|-
T Consensus 207 q~~~CrnLCLlsKlF---Ld~Kt--------LY------yDVDpflFYvl~~~~~~~~h~vGyFSKEK~S~~~yNLaCIL 269 (395)
T COG5027 207 QRLYCRNLCLLSKLF---LDHKT--------LY------YDVDPFLFYVLTERGDTGCHLVGYFSKEKESEQDYNLACIL 269 (395)
T ss_pred hhhHHHHHHHHHHHH---hcCce--------eE------EeccceEEEEEEEcCCcceeeeeeechhhcccccCceEEEE
Confidence 456788888888888 33332 22 2344443333343332 333211111112223456788
Q ss_pred eccCcccCChhHHHHHH
Q 001383 999 TSNDCQGQGYFQSLFCC 1015 (1088)
Q Consensus 999 T~~~~RgqG~gr~L~~a 1015 (1088)
|.|.|||+|||..||+.
T Consensus 270 tLP~yQRrGYG~lLIdF 286 (395)
T COG5027 270 TLPPYQRRGYGKLLIDF 286 (395)
T ss_pred ecChhHhcccceEeeee
Confidence 99999999999998753
No 194
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=21.51 E-value=68 Score=42.17 Aligned_cols=49 Identities=33% Similarity=0.880 Sum_probs=37.3
Q ss_pred CcceeccCCCCCCCCCCCcceeecCCCCCcCCCCCCCCCCCCCcccCCCCCcccCCCchhh
Q 001383 806 GGCVLCRGRDFCKSRFGRRTVILCDQCEREYHVGCLKDHGMEDLQELPKGKWLCCADCKRI 866 (1088)
Q Consensus 806 ~~C~vCk~~d~sksgf~~g~LL~CDqC~raYHv~CL~p~g~~~LkEiP~g~WfCp~~C~~I 866 (1088)
..|..|.+.. .+..+ +|+.|...||..|.. +++..++++.|.|+ .|...
T Consensus 156 ~~~~~~~k~~------~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~ 204 (904)
T KOG1246|consen 156 PQCNTCSKGK------EEKLL-LCDSCDDSYHTYCLR----PPLTRVPDGDWRCP-KCIPT 204 (904)
T ss_pred hhhhccccCC------Cccce-ecccccCcccccccC----CCCCcCCcCcccCC-ccccc
Confidence 3488887742 22335 999999999999999 46888999999985 56554
No 195
>PF00385 Chromo: Chromo (CHRromatin Organisation MOdifier) domain; InterPro: IPR023780 The CHROMO (CHRromatin Organization MOdifier) domain [, , , ] is a conserved region of around 60 amino acids, originally identified in Drosophila modifiers of variegation. These are proteins that alter the structure of chromatin to the condensed morphology of heterochromatin, a cytologically visible condition where gene expression is repressed. In one of these proteins, Polycomb, the chromo domain has been shown to be important for chromatin targeting. Proteins that contain a chromo domain appear to fall into 3 classes. The first class includes proteins having an N-terminal chromo domain followed by a region termed the chromo shadow domain, with weak but significant sequence similarity to the N-terminal chromo domain,[], eg. Drosophila and human heterochromatin protein Su(var)205 (HP1). The second class includes proteins with a single chromo domain, eg. Drosophila protein Polycomb (Pc); mammalian modifier 3; human Mi-2 autoantigen and several yeast and Caenorhabditis elegans hypothetical proteins. In the third class paired tandem chromo domains are found, eg. in mammalian DNA-binding/helicase proteins CHD-1 to CHD-4 and yeast protein CHD1. Functional dissections of chromo domain proteins suggests a mechanistic role for chromo domains in targeting chromo domain proteins to specific regions of the nucleus. The mechanism of targeting may involve protein-protein and/or protein/nucleic acid interactions. Hence, several line of evidence show that the HP1 chromo domain is a methyl-specific histone binding module, whereas the chromo domain of two protein components of the drosophila dosage compensation complex, MSL3 and MOF, contain chromo domains that bind to RNA in vitro []. The high resolution structures of HP1-family protein chromo and chromo shadow domain reveal a conserved chromo domain fold motif consisting of three beta strands packed against an alpha helix. The chromo domain fold belongs to the OB (oligonucleotide/oligosaccharide binding)-fold class found in a variety of prokaryotic and eukaryotic nucleic acid binding protein [].; PDB: 2H1E_B 3MWY_W 2DY8_A 1KNE_A 1KNA_A 1Q3L_A 2EE1_A 1AP0_A 1GUW_A 1X3P_A ....
Probab=21.38 E-value=20 Score=30.22 Aligned_cols=20 Identities=10% Similarity=0.197 Sum_probs=17.1
Q ss_pred cccceeeEEecCCccCCCch
Q 001383 902 VDFDVRWRVLRGKKVDASDG 921 (1088)
Q Consensus 902 ~e~~VkWqlLSy~~~s~~~e 921 (1088)
.+|+|+|+++++.+++|.++
T Consensus 19 ~~ylVkW~g~~~~~~tWe~~ 38 (55)
T PF00385_consen 19 YEYLVKWKGYPYSENTWEPE 38 (55)
T ss_dssp EEEEEEETTSSGGGEEEEEG
T ss_pred EEEEEEECCCCCCCCeEeeH
Confidence 48999999999999998443
No 196
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only]
Probab=20.34 E-value=58 Score=38.29 Aligned_cols=44 Identities=23% Similarity=0.539 Sum_probs=34.0
Q ss_pred ceeecCCCCCcCCCCC--CCCCCCCCcccCCCCCcccCCCchhhHHHHHH
Q 001383 825 TVILCDQCEREYHVGC--LKDHGMEDLQELPKGKWLCCADCKRINLALQK 872 (1088)
Q Consensus 825 ~LL~CDqC~raYHv~C--L~p~g~~~LkEiP~g~WfCp~~C~~I~~kLqk 872 (1088)
.++.|+.|..+||..| +.. +-....+...|+| ..|......++.
T Consensus 74 ~~~~cd~C~~~~~~ec~~v~~---~~~e~p~~~~~~c-~~c~~~~~~~~~ 119 (345)
T KOG1632|consen 74 LMEQCDLCEDWYHGECWEVGT---AEKEAPKEDPKVC-DECKEAQDGMSE 119 (345)
T ss_pred hhhccccccccccccccccCc---hhhcCCccccccc-cccchhhhhhhh
Confidence 5799999999999999 653 3344445678999 899988766653
Done!