Query 001384
Match_columns 1088
No_of_seqs 1019 out of 6641
Neff 9.2
Searched_HMMs 29240
Date Tue Mar 26 01:19:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001384.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001384hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 3.5E-80 1.2E-84 780.2 44.2 657 28-711 6-751 (768)
2 3rgz_A Protein brassinosteroid 100.0 1.1E-64 3.7E-69 639.0 36.8 585 79-673 100-743 (768)
3 4eco_A Uncharacterized protein 100.0 9E-57 3.1E-61 553.8 25.3 518 31-671 27-601 (636)
4 1ziw_A TOLL-like receptor 3; i 100.0 1.1E-54 3.7E-59 543.1 40.1 562 79-695 25-623 (680)
5 3t6q_A CD180 antigen; protein- 100.0 5.2E-53 1.8E-57 520.7 38.7 482 80-670 34-560 (606)
6 1ziw_A TOLL-like receptor 3; i 100.0 2.6E-52 8.8E-57 521.6 42.5 539 79-672 49-624 (680)
7 4ecn_A Leucine-rich repeat pro 100.0 8.6E-53 3E-57 525.4 32.7 412 29-484 264-775 (876)
8 3j0a_A TOLL-like receptor 5; m 100.0 1.8E-51 6.2E-56 523.9 41.4 511 67-671 14-561 (844)
9 3t6q_A CD180 antigen; protein- 100.0 1.4E-51 4.9E-56 507.8 34.3 520 87-695 20-561 (606)
10 3vq2_A TLR4, TOLL-like recepto 100.0 1.7E-51 5.9E-56 507.1 34.0 502 79-671 32-559 (606)
11 3vq2_A TLR4, TOLL-like recepto 100.0 6E-50 2E-54 493.4 34.5 517 84-695 16-559 (606)
12 4asz_A BDNF/NT-3 growth factor 100.0 7.1E-51 2.4E-55 448.2 16.5 256 805-1085 13-289 (299)
13 3j0a_A TOLL-like receptor 5; m 100.0 4.7E-49 1.6E-53 501.6 34.5 515 84-695 9-561 (844)
14 4aoj_A High affinity nerve gro 100.0 2.6E-50 8.9E-55 450.1 20.0 256 806-1086 42-320 (329)
15 4gt4_A Tyrosine-protein kinase 100.0 1.2E-49 4E-54 440.5 18.3 254 806-1084 27-305 (308)
16 3omv_A RAF proto-oncogene seri 100.0 2.2E-48 7.5E-53 428.0 25.1 257 805-1084 36-299 (307)
17 4fih_A Serine/threonine-protei 100.0 1.6E-48 5.6E-53 434.1 23.1 249 805-1078 74-323 (346)
18 4b9d_A Serine/threonine-protei 100.0 3E-49 1E-53 440.8 17.1 248 805-1078 24-276 (350)
19 4g3f_A NF-kappa-beta-inducing 100.0 8.2E-49 2.8E-53 435.3 20.1 252 805-1084 58-315 (336)
20 4aw0_A HPDK1, 3-phosphoinositi 100.0 6.1E-49 2.1E-53 430.9 18.3 247 805-1077 32-283 (311)
21 2z81_A CD282 antigen, TOLL-lik 100.0 1.3E-47 4.5E-52 466.7 29.2 489 66-680 3-519 (549)
22 3hyh_A Carbon catabolite-derep 100.0 8.1E-48 2.8E-52 416.6 22.4 245 805-1078 13-262 (275)
23 3fpq_A Serine/threonine-protei 100.0 1.8E-47 6.3E-52 417.6 23.6 244 808-1078 29-282 (290)
24 4fie_A Serine/threonine-protei 100.0 2.4E-47 8.2E-52 435.1 24.9 249 805-1078 151-400 (423)
25 4ase_A Vascular endothelial gr 100.0 4.7E-48 1.6E-52 435.1 14.5 264 799-1085 58-347 (353)
26 2z63_A TOLL-like receptor 4, v 100.0 5.6E-46 1.9E-50 454.6 33.7 494 103-680 28-540 (570)
27 3ubd_A Ribosomal protein S6 ki 100.0 1.2E-47 4.1E-52 421.0 15.6 242 805-1073 24-271 (304)
28 3hmm_A TGF-beta receptor type- 100.0 1.3E-46 4.5E-51 417.5 23.3 264 806-1086 4-298 (303)
29 2z63_A TOLL-like receptor 4, v 100.0 2.5E-45 8.6E-50 448.8 30.6 484 79-651 28-536 (570)
30 4eco_A Uncharacterized protein 100.0 4.1E-46 1.4E-50 458.8 22.7 446 150-695 82-601 (636)
31 2z7x_B TOLL-like receptor 1, v 100.0 7.5E-46 2.6E-50 447.8 24.0 451 83-670 4-481 (520)
32 4ecn_A Leucine-rich repeat pro 100.0 1.9E-45 6.4E-50 459.3 27.5 457 103-671 323-841 (876)
33 2z81_A CD282 antigen, TOLL-lik 100.0 2.4E-45 8.2E-50 446.7 25.7 475 67-650 12-514 (549)
34 4g31_A Eukaryotic translation 100.0 3.7E-45 1.3E-49 403.5 20.8 247 805-1078 5-279 (299)
35 2z7x_B TOLL-like receptor 1, v 100.0 2.1E-44 7.3E-49 435.1 22.2 437 79-650 21-485 (520)
36 4f9c_A Cell division cycle 7-r 100.0 1.2E-43 4.2E-48 402.3 21.7 205 799-1014 15-252 (361)
37 4b99_A Mitogen-activated prote 100.0 1.4E-43 5E-48 405.8 20.6 267 804-1078 53-344 (398)
38 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 7.4E-43 2.5E-47 425.3 24.7 458 82-675 34-514 (562)
39 4g8a_A TOLL-like receptor 4; l 100.0 1.2E-41 4.3E-46 421.8 35.9 544 55-670 11-580 (635)
40 3v5w_A G-protein coupled recep 100.0 3.6E-43 1.2E-47 417.6 17.8 246 805-1077 189-448 (689)
41 3uto_A Twitchin; kinase, muscl 100.0 5.8E-42 2E-46 412.4 23.8 250 805-1078 157-410 (573)
42 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2E-41 6.9E-46 412.6 25.7 368 79-478 52-445 (562)
43 1jl5_A Outer protein YOPM; leu 100.0 3.9E-41 1.3E-45 396.2 25.8 320 101-474 9-330 (454)
44 3uim_A Brassinosteroid insensi 100.0 3.5E-41 1.2E-45 381.2 22.5 282 792-1083 17-309 (326)
45 2qkw_B Protein kinase; three-h 100.0 1.7E-41 5.7E-46 382.8 19.4 280 794-1086 28-316 (321)
46 1ogq_A PGIP-2, polygalacturona 100.0 1E-40 3.4E-45 374.0 19.8 296 30-475 2-306 (313)
47 4g8a_A TOLL-like receptor 4; l 100.0 1.5E-39 5E-44 403.2 31.9 480 79-647 52-581 (635)
48 3fxz_A Serine/threonine-protei 100.0 6.6E-40 2.3E-44 364.9 24.9 250 804-1078 19-269 (297)
49 3zgw_A Maternal embryonic leuc 100.0 2.7E-40 9.3E-45 374.5 21.6 250 803-1078 8-260 (347)
50 3s95_A LIMK-1, LIM domain kina 100.0 6.6E-40 2.3E-44 367.8 22.8 258 805-1085 10-282 (310)
51 3bz5_A Internalin-J, INLJ; leu 100.0 3E-39 1E-43 380.5 28.9 323 92-475 31-353 (457)
52 3fe3_A MAP/microtubule affinit 100.0 5.7E-40 2E-44 369.9 21.4 247 804-1078 14-264 (328)
53 3p86_A Serine/threonine-protei 100.0 6.4E-40 2.2E-44 367.0 21.5 258 804-1087 36-300 (309)
54 1jl5_A Outer protein YOPM; leu 100.0 4.9E-40 1.7E-44 386.9 21.3 343 79-478 11-353 (454)
55 2psq_A Fibroblast growth facto 100.0 5.5E-40 1.9E-44 377.0 20.9 258 804-1085 80-364 (370)
56 3sxs_A Cytoplasmic tyrosine-pr 100.0 5E-40 1.7E-44 360.5 19.1 257 804-1086 7-265 (268)
57 4hcu_A Tyrosine-protein kinase 100.0 3E-40 1E-44 362.5 17.1 256 805-1086 10-267 (269)
58 4eqm_A Protein kinase; transfe 100.0 9E-40 3.1E-44 363.4 20.8 262 804-1086 10-276 (294)
59 3kul_A Ephrin type-A receptor 100.0 4.3E-40 1.5E-44 371.3 18.5 259 804-1087 48-315 (325)
60 3v47_A TOLL-like receptor 5B a 100.0 4.7E-39 1.6E-43 381.6 27.5 362 244-683 30-420 (455)
61 2yab_A Death-associated protei 100.0 4.3E-39 1.5E-43 367.1 24.6 251 804-1078 11-272 (361)
62 1o6l_A RAC-beta serine/threoni 100.0 3.5E-39 1.2E-43 364.4 23.7 247 805-1078 5-260 (337)
63 3v47_A TOLL-like receptor 5B a 100.0 9.2E-39 3.1E-43 379.1 27.7 354 103-479 30-413 (455)
64 2nru_A Interleukin-1 receptor- 100.0 2.5E-38 8.4E-43 354.5 28.9 280 791-1085 11-306 (307)
65 3soc_A Activin receptor type-2 100.0 2.7E-39 9.4E-44 364.5 21.0 264 805-1085 24-318 (322)
66 3gen_A Tyrosine-protein kinase 100.0 8.8E-40 3E-44 361.7 16.5 256 804-1085 23-280 (283)
67 2c30_A Serine/threonine-protei 100.0 1.3E-38 4.5E-43 358.5 25.7 262 792-1078 22-294 (321)
68 3ugc_A Tyrosine-protein kinase 100.0 3.9E-40 1.3E-44 366.9 13.0 272 805-1086 10-292 (295)
69 3q4u_A Activin receptor type-1 100.0 4.7E-39 1.6E-43 359.3 21.1 260 804-1083 7-300 (301)
70 2qol_A Ephrin receptor; recept 100.0 1.1E-39 3.8E-44 374.7 16.4 257 805-1086 45-310 (373)
71 3txo_A PKC-L, NPKC-ETA, protei 100.0 2.6E-39 8.8E-44 368.0 18.4 249 804-1078 22-280 (353)
72 1qcf_A Haematopoetic cell kina 100.0 1.8E-39 6E-44 383.5 17.2 256 804-1086 187-445 (454)
73 3cbl_A C-FES, proto-oncogene t 100.0 1.6E-39 5.6E-44 374.5 16.5 256 804-1085 113-374 (377)
74 2y0a_A Death-associated protei 100.0 1.6E-38 5.6E-43 358.6 23.4 250 805-1078 11-271 (326)
75 1tki_A Titin; serine kinase, m 100.0 1.3E-38 4.6E-43 358.2 22.4 250 804-1078 4-257 (321)
76 1luf_A Muscle-specific tyrosin 100.0 3.6E-39 1.2E-43 367.5 17.7 260 803-1087 45-337 (343)
77 4dc2_A Protein kinase C IOTA t 100.0 4.8E-39 1.7E-43 369.7 18.7 245 805-1073 52-307 (396)
78 1mp8_A Focal adhesion kinase 1 100.0 3.4E-39 1.1E-43 356.6 16.7 256 804-1085 14-276 (281)
79 3h4j_B AMPK kdaid, SNF1-like p 100.0 7.3E-39 2.5E-43 361.4 19.7 246 804-1078 8-258 (336)
80 1fot_A TPK1 delta, CAMP-depend 100.0 1.7E-38 5.8E-43 356.2 22.4 244 805-1078 6-258 (318)
81 3soa_A Calcium/calmodulin-depe 100.0 2.8E-38 9.7E-43 369.7 25.3 253 803-1078 9-267 (444)
82 2bdw_A Hypothetical protein K1 100.0 1.9E-38 6.6E-43 362.8 23.3 252 803-1078 27-284 (362)
83 3tki_A Serine/threonine-protei 100.0 7.2E-39 2.5E-43 360.8 19.2 252 804-1078 6-261 (323)
84 3t9t_A Tyrosine-protein kinase 100.0 3.6E-39 1.2E-43 353.4 16.2 255 805-1085 8-264 (267)
85 3qup_A Tyrosine-protein kinase 100.0 4.8E-39 1.6E-43 363.1 17.7 260 803-1087 21-300 (323)
86 1opk_A P150, C-ABL, proto-onco 100.0 5.1E-39 1.7E-43 383.2 18.2 256 804-1086 219-479 (495)
87 1k9a_A Carboxyl-terminal SRC k 100.0 1.1E-38 3.9E-43 375.9 20.9 251 804-1086 192-446 (450)
88 1xjd_A Protein kinase C, theta 100.0 6.8E-39 2.3E-43 363.0 18.1 249 803-1077 15-268 (345)
89 2ivs_A Proto-oncogene tyrosine 100.0 7.9E-39 2.7E-43 359.8 18.5 258 804-1086 22-312 (314)
90 3vhe_A Vascular endothelial gr 100.0 3E-39 1E-43 370.6 15.3 267 796-1085 13-355 (359)
91 1kob_A Twitchin; kinase, intra 100.0 4.3E-38 1.5E-42 362.0 24.8 251 804-1078 50-304 (387)
92 3tt0_A Basic fibroblast growth 100.0 6.8E-39 2.3E-43 370.2 18.1 257 804-1084 68-351 (382)
93 2h34_A Serine/threonine-protei 100.0 5.3E-38 1.8E-42 351.9 24.6 262 804-1088 33-299 (309)
94 4e5w_A Tyrosine-protein kinase 100.0 8.8E-39 3E-43 357.2 18.1 271 805-1085 21-302 (302)
95 1fmk_A C-SRC, P60-SRC, tyrosin 100.0 6.4E-39 2.2E-43 378.3 17.8 256 804-1086 183-441 (452)
96 4fr4_A YANK1, serine/threonine 100.0 2.1E-38 7.3E-43 363.2 21.4 248 805-1078 15-271 (384)
97 1rdq_E PKA C-alpha, CAMP-depen 100.0 3E-38 1E-42 359.0 22.4 244 805-1078 41-293 (350)
98 2i0e_A Protein kinase C-beta I 100.0 2.3E-38 7.7E-43 359.9 21.2 248 804-1077 19-275 (353)
99 1qpc_A LCK kinase; alpha beta 100.0 8E-39 2.7E-43 353.2 16.6 256 804-1086 12-270 (279)
100 4aw2_A Serine/threonine-protei 100.0 1E-38 3.4E-43 372.0 18.3 261 797-1078 66-338 (437)
101 4f0f_A Serine/threonine-protei 100.0 9.6E-38 3.3E-42 346.1 25.1 252 804-1083 18-287 (287)
102 2w4o_A Calcium/calmodulin-depe 100.0 1.2E-38 4.1E-43 363.0 18.2 251 803-1078 51-305 (349)
103 3o0g_A Cell division protein k 100.0 6.5E-38 2.2E-42 348.4 23.6 265 805-1078 2-282 (292)
104 3l9p_A Anaplastic lymphoma kin 100.0 3.2E-39 1.1E-43 370.4 13.3 257 804-1085 70-345 (367)
105 3v8s_A RHO-associated protein 100.0 1.2E-38 4E-43 368.7 18.1 256 800-1078 64-329 (410)
106 3niz_A Rhodanese family protei 100.0 4.5E-38 1.5E-42 352.6 21.9 266 804-1078 20-300 (311)
107 3kfa_A Tyrosine-protein kinase 100.0 5.8E-39 2E-43 356.1 14.2 256 803-1085 11-271 (288)
108 3dtc_A Mitogen-activated prote 100.0 2.9E-38 1E-42 347.1 19.5 253 805-1083 7-271 (271)
109 1csn_A Casein kinase-1; phosph 100.0 2.9E-38 1E-42 352.3 19.7 261 804-1085 9-283 (298)
110 3a8x_A Protein kinase C IOTA t 100.0 2.2E-38 7.5E-43 359.6 18.9 245 805-1073 9-264 (345)
111 3uc3_A Serine/threonine-protei 100.0 6.6E-38 2.2E-42 358.5 23.0 250 804-1078 19-274 (361)
112 3lxl_A Tyrosine-protein kinase 100.0 1.6E-38 5.6E-43 359.3 17.7 272 805-1086 23-304 (327)
113 3poz_A Epidermal growth factor 100.0 1.4E-38 5E-43 359.5 17.0 254 805-1085 15-278 (327)
114 3c0i_A Peripheral plasma membr 100.0 5.1E-38 1.8E-42 358.3 21.7 250 805-1078 24-286 (351)
115 3mdy_A Bone morphogenetic prot 100.0 1.1E-37 3.8E-42 354.2 24.4 270 802-1088 34-334 (337)
116 2r5t_A Serine/threonine-protei 100.0 3E-38 1E-42 361.5 19.7 247 805-1077 38-288 (373)
117 3lb7_A RAF proto-oncogene seri 100.0 1.5E-37 5.2E-42 347.5 25.0 260 804-1086 35-301 (307)
118 2izr_A Casein kinase I isoform 100.0 2E-38 6.8E-43 359.0 17.8 260 804-1085 8-281 (330)
119 1rjb_A FL cytokine receptor; k 100.0 2.1E-38 7.2E-43 361.2 17.8 262 803-1087 43-336 (344)
120 3a62_A Ribosomal protein S6 ki 100.0 5.5E-38 1.9E-42 354.4 21.0 247 805-1078 17-276 (327)
121 4fvq_A Tyrosine-protein kinase 100.0 1.9E-38 6.4E-43 352.2 16.8 252 804-1086 7-276 (289)
122 1ob3_A PFPK5, cell division co 100.0 1E-37 3.5E-42 346.0 22.3 265 805-1078 2-280 (288)
123 4euu_A Serine/threonine-protei 100.0 2.2E-37 7.5E-42 348.7 25.3 270 805-1084 9-308 (319)
124 3kk8_A Calcium/calmodulin depe 100.0 2.8E-37 9.5E-42 341.8 25.5 251 804-1078 5-261 (284)
125 3f3z_A Calcium/calmodulin-depe 100.0 1.4E-37 4.7E-42 342.9 22.8 255 804-1083 8-268 (277)
126 2vd5_A DMPK protein; serine/th 100.0 3.2E-38 1.1E-42 365.2 18.5 260 797-1078 53-327 (412)
127 2eue_A Carbon catabolite derep 100.0 7.6E-38 2.6E-42 344.6 20.5 245 805-1078 13-262 (275)
128 2pvf_A Fibroblast growth facto 100.0 3.4E-38 1.2E-42 357.7 18.0 258 804-1085 34-318 (334)
129 3ork_A Serine/threonine protei 100.0 2.6E-38 8.9E-43 354.9 16.8 258 804-1083 11-279 (311)
130 3kmu_A ILK, integrin-linked ki 100.0 8.2E-38 2.8E-42 343.4 20.4 250 805-1085 10-270 (271)
131 1t46_A HOMO sapiens V-KIT hard 100.0 2E-38 6.7E-43 356.4 15.7 260 804-1086 22-308 (313)
132 2x4f_A Myosin light chain kina 100.0 1.4E-37 4.8E-42 357.0 23.1 245 810-1078 94-342 (373)
133 2y94_A 5'-AMP-activated protei 100.0 9.2E-38 3.1E-42 367.7 22.0 247 804-1078 15-266 (476)
134 3op5_A Serine/threonine-protei 100.0 1.7E-38 5.9E-43 364.6 15.4 264 804-1085 34-329 (364)
135 3cc6_A Protein tyrosine kinase 100.0 3.2E-38 1.1E-42 348.8 16.7 255 804-1085 11-273 (281)
136 2pmi_A Negative RE, cyclin-dep 100.0 2.1E-37 7.1E-42 348.3 23.6 273 804-1085 4-302 (317)
137 3kex_A Receptor tyrosine-prote 100.0 2.1E-38 7.2E-43 357.9 15.4 254 805-1085 13-276 (325)
138 2a2a_A Death-associated protei 100.0 1.8E-37 6.3E-42 349.6 23.1 251 804-1078 11-272 (321)
139 1mqb_A Ephrin type-A receptor 100.0 5.7E-38 1.9E-42 355.4 18.7 257 805-1086 44-310 (333)
140 3fdn_A Serine/threonine-protei 100.0 1.1E-37 3.7E-42 344.1 20.1 246 804-1078 8-257 (279)
141 2eva_A TAK1 kinase - TAB1 chim 100.0 1E-37 3.5E-42 349.1 20.2 252 805-1085 8-263 (307)
142 2zv2_A Calcium/calmodulin-depe 100.0 2.7E-37 9.2E-42 344.4 23.2 249 804-1078 12-292 (298)
143 3qd2_B Eukaryotic translation 100.0 8.5E-38 2.9E-42 354.3 19.1 248 804-1078 5-325 (332)
144 2h8h_A Proto-oncogene tyrosine 100.0 2.1E-38 7.3E-43 381.3 14.9 256 804-1086 266-524 (535)
145 3bz5_A Internalin-J, INLJ; leu 100.0 4.3E-37 1.5E-41 362.2 25.7 369 112-654 27-395 (457)
146 3hko_A Calcium/calmodulin-depe 100.0 1.6E-37 5.4E-42 354.2 21.2 257 800-1078 21-330 (345)
147 1o6v_A Internalin A; bacterial 100.0 1.9E-36 6.5E-41 359.6 31.2 348 80-481 47-394 (466)
148 1xbb_A Tyrosine-protein kinase 100.0 7.9E-38 2.7E-42 347.5 18.0 255 805-1085 16-279 (291)
149 1p4o_A Insulin-like growth fac 100.0 3.4E-38 1.1E-42 356.0 15.3 260 802-1086 22-300 (322)
150 2wqm_A Serine/threonine-protei 100.0 4.2E-37 1.4E-41 345.0 24.1 258 804-1084 31-296 (310)
151 2ac3_A MAP kinase-interacting 100.0 2E-38 7E-43 356.8 13.2 256 804-1078 11-295 (316)
152 3llt_A Serine/threonine kinase 100.0 2.1E-37 7.1E-42 355.3 21.8 214 792-1014 22-264 (360)
153 4ejn_A RAC-alpha serine/threon 100.0 6.3E-38 2.2E-42 369.8 17.9 247 805-1078 148-404 (446)
154 3kn6_A Ribosomal protein S6 ki 100.0 9.5E-38 3.3E-42 352.0 18.6 246 810-1078 16-270 (325)
155 3gni_B Strad alpha; kinase fol 100.0 1.9E-37 6.4E-42 359.5 21.5 268 804-1078 24-333 (389)
156 3dbq_A Dual specificity protei 100.0 1.6E-37 5.5E-42 353.4 20.6 253 804-1079 8-274 (343)
157 3lzb_A Epidermal growth factor 100.0 8.7E-38 3E-42 352.8 18.0 257 804-1086 14-279 (327)
158 1b6c_B TGF-B superfamily recep 100.0 4.4E-37 1.5E-41 350.0 24.0 266 801-1086 38-337 (342)
159 3brb_A Proto-oncogene tyrosine 100.0 3.5E-38 1.2E-42 354.3 14.8 263 799-1086 28-309 (313)
160 3og7_A AKAP9-BRAF fusion prote 100.0 3.3E-37 1.1E-41 342.0 22.4 259 804-1085 23-288 (289)
161 3dls_A PAS domain-containing s 100.0 6.8E-38 2.3E-42 354.7 17.0 243 803-1079 22-275 (335)
162 2acx_A G protein-coupled recep 100.0 7.4E-38 2.5E-42 372.7 18.0 248 805-1078 184-444 (576)
163 3gxj_A TGF-beta receptor type- 100.0 7.6E-39 2.6E-43 357.9 8.7 262 805-1086 3-298 (303)
164 1u59_A Tyrosine-protein kinase 100.0 1.2E-37 4.2E-42 345.2 18.3 255 805-1085 9-272 (287)
165 2v62_A Serine/threonine-protei 100.0 5.1E-38 1.8E-42 357.8 15.5 264 804-1085 36-328 (345)
166 3g33_A Cell division protein k 100.0 8.2E-37 2.8E-41 342.3 24.9 269 803-1078 7-296 (308)
167 4agu_A Cyclin-dependent kinase 100.0 3E-37 1E-41 346.3 21.4 266 805-1078 3-284 (311)
168 3is5_A Calcium-dependent prote 100.0 5.5E-37 1.9E-41 339.5 22.9 248 805-1078 22-278 (285)
169 2jam_A Calcium/calmodulin-depe 100.0 4.8E-37 1.6E-41 343.4 22.7 250 804-1078 8-261 (304)
170 3lxp_A Non-receptor tyrosine-p 100.0 1.1E-37 3.8E-42 350.8 17.5 268 807-1085 33-310 (318)
171 1byg_A CSK, protein (C-termina 100.0 8.4E-38 2.9E-42 344.8 16.2 250 804-1085 20-273 (278)
172 1fvr_A Tyrosine-protein kinase 100.0 8.7E-38 3E-42 353.4 16.6 255 805-1085 25-300 (327)
173 1nxk_A MAP kinase-activated pr 100.0 2E-37 6.8E-42 359.2 20.0 248 805-1078 61-321 (400)
174 2qr7_A Ribosomal protein S6 ki 100.0 8.6E-38 3E-42 354.3 16.4 251 804-1078 21-277 (342)
175 1vzo_A Ribosomal protein S6 ki 100.0 4.4E-38 1.5E-42 359.4 14.1 251 805-1078 54-321 (355)
176 3c1x_A Hepatocyte growth facto 100.0 9E-38 3.1E-42 358.3 16.5 255 806-1086 90-356 (373)
177 2xir_A Vascular endothelial gr 100.0 6.5E-38 2.2E-42 352.6 15.0 267 796-1085 18-310 (316)
178 3bhy_A Death-associated protei 100.0 6E-37 2E-41 338.9 22.4 255 805-1083 5-272 (283)
179 3g2f_A Bone morphogenetic prot 100.0 8.8E-38 3E-42 354.9 16.0 266 805-1086 13-319 (336)
180 4eut_A Serine/threonine-protei 100.0 1.4E-37 4.6E-42 361.0 17.9 273 804-1086 8-310 (396)
181 2zmd_A Dual specificity protei 100.0 5E-37 1.7E-41 354.8 22.4 251 805-1078 56-320 (390)
182 3lm5_A Serine/threonine-protei 100.0 3.7E-37 1.3E-41 347.9 20.8 262 794-1078 17-287 (327)
183 2yex_A Serine/threonine-protei 100.0 4.3E-37 1.5E-41 338.7 20.8 252 804-1078 6-261 (276)
184 2buj_A Serine/threonine-protei 100.0 1.6E-37 5.5E-42 349.6 17.6 260 804-1086 28-307 (317)
185 2vgo_A Serine/threonine-protei 100.0 4.6E-37 1.6E-41 340.0 20.9 245 805-1078 14-262 (284)
186 3ttj_A Mitogen-activated prote 100.0 4.2E-37 1.4E-41 362.9 21.7 262 804-1078 61-355 (464)
187 3f66_A Hepatocyte growth facto 100.0 1.9E-37 6.6E-42 345.7 17.8 257 805-1086 25-292 (298)
188 2rku_A Serine/threonine-protei 100.0 4.8E-37 1.6E-41 341.7 20.9 248 804-1078 14-265 (294)
189 3cok_A Serine/threonine-protei 100.0 3.2E-37 1.1E-41 340.1 19.0 247 805-1078 11-262 (278)
190 2w1i_A JAK2; chromosomal rearr 100.0 9.4E-38 3.2E-42 352.8 15.0 271 805-1085 41-322 (326)
191 4hgt_A Casein kinase I isoform 100.0 2.8E-37 9.5E-42 344.0 18.3 258 802-1085 6-280 (296)
192 2ozo_A Tyrosine-protein kinase 100.0 2.4E-37 8.2E-42 377.3 19.2 253 806-1084 336-597 (613)
193 3p1a_A MYT1 kinase, membrane-a 100.0 3.1E-37 1E-41 345.9 18.5 244 805-1078 57-304 (311)
194 3lij_A Calcium/calmodulin depe 100.0 1.2E-36 4.2E-41 363.5 24.6 250 804-1078 36-291 (494)
195 2a19_B Interferon-induced, dou 100.0 1.7E-37 6E-42 343.4 16.0 248 803-1086 9-275 (284)
196 2owb_A Serine/threonine-protei 100.0 5.1E-37 1.7E-41 348.0 20.1 248 804-1078 40-291 (335)
197 4fl3_A Tyrosine-protein kinase 100.0 2.2E-37 7.6E-42 378.4 18.3 248 811-1084 375-630 (635)
198 3pls_A Macrophage-stimulating 100.0 3.2E-37 1.1E-41 343.9 18.0 255 806-1086 22-288 (298)
199 2h6d_A 5'-AMP-activated protei 100.0 1E-36 3.4E-41 335.8 21.5 247 804-1078 10-261 (276)
200 3uzp_A CKI-delta, CKID, casein 100.0 4.6E-37 1.6E-41 342.2 19.1 256 804-1085 8-280 (296)
201 2y7j_A Phosphorylase B kinase 100.0 1.1E-36 3.9E-41 348.9 22.8 259 797-1078 86-359 (365)
202 3gbz_A Kinase, CMGC CDK; ssgci 100.0 5E-37 1.7E-41 347.2 19.5 266 804-1078 33-318 (329)
203 3e7e_A HBUB1, BUB1A, mitotic c 100.0 6.2E-37 2.1E-41 351.9 20.4 252 804-1085 64-339 (365)
204 3pfq_A PKC-B, PKC-beta, protei 100.0 7.4E-37 2.5E-41 376.4 22.5 248 804-1077 340-596 (674)
205 3eqc_A Dual specificity mitoge 100.0 3E-37 1E-41 353.9 17.5 265 805-1078 33-324 (360)
206 2jii_A Serine/threonine-protei 100.0 1.7E-37 5.7E-42 354.7 15.2 258 804-1085 41-336 (352)
207 3mwu_A Calmodulin-domain prote 100.0 1.3E-36 4.5E-41 362.7 23.5 250 804-1078 21-276 (486)
208 3c4z_A Rhodopsin kinase; Ser/T 100.0 3.5E-37 1.2E-41 366.5 18.3 244 805-1073 185-438 (543)
209 2i1m_A Macrophage colony-stimu 100.0 3.9E-37 1.3E-41 349.0 17.7 258 804-1084 45-325 (333)
210 3mtl_A Cell division protein k 100.0 3.6E-37 1.2E-41 347.5 17.2 265 805-1078 2-281 (324)
211 1t4h_A Serine/threonine-protei 100.0 2.5E-36 8.6E-41 335.2 23.7 247 805-1078 26-282 (290)
212 3nyv_A Calmodulin-domain prote 100.0 9.1E-37 3.1E-41 364.2 21.3 250 804-1078 25-281 (484)
213 1x8b_A WEE1HU, WEE1-like prote 100.0 6E-37 2.1E-41 339.8 18.2 244 803-1078 9-279 (289)
214 3oz6_A Mitogen-activated prote 100.0 3.6E-37 1.2E-41 356.9 16.8 205 802-1014 6-236 (388)
215 1o6v_A Internalin A; bacterial 100.0 1.8E-35 6.2E-40 351.2 31.8 326 79-456 68-393 (466)
216 3q5i_A Protein kinase; CDPK, m 100.0 2.3E-36 7.9E-41 362.1 24.2 251 803-1078 34-301 (504)
217 3i6u_A CDS1, serine/threonine- 100.0 7.2E-37 2.4E-41 357.1 19.2 251 802-1078 132-399 (419)
218 3byv_A Rhoptry kinase; malaria 100.0 1.7E-37 5.8E-42 358.0 13.8 242 804-1078 72-359 (377)
219 2yfx_A Tyrosine-protein kinase 100.0 4E-37 1.4E-41 347.9 16.3 257 804-1085 29-304 (327)
220 2w5a_A Serine/threonine-protei 100.0 2.1E-37 7.3E-42 341.8 13.6 252 804-1081 5-270 (279)
221 3com_A Serine/threonine-protei 100.0 3.5E-36 1.2E-40 338.2 23.6 250 803-1078 27-278 (314)
222 3a7i_A MST3 kinase, serine/thr 100.0 1.5E-36 5E-41 339.4 19.9 248 804-1078 21-270 (303)
223 3rp9_A Mitogen-activated prote 100.0 2.2E-36 7.7E-41 358.2 22.5 193 804-1004 52-279 (458)
224 1phk_A Phosphorylase kinase; g 100.0 4.6E-36 1.6E-40 334.5 23.7 253 803-1078 15-283 (298)
225 4aaa_A Cyclin-dependent kinase 100.0 4.8E-37 1.7E-41 347.8 15.8 263 805-1078 25-306 (331)
226 3mi9_A Cell division protein k 100.0 2.7E-36 9.2E-41 344.7 22.0 266 805-1078 17-311 (351)
227 1u5q_A Serine/threonine protei 100.0 9E-37 3.1E-41 347.0 18.0 244 805-1078 54-305 (348)
228 3sv0_A Casein kinase I-like; t 100.0 1.8E-36 6.1E-41 357.4 20.8 261 804-1085 6-278 (483)
229 1ua2_A CAK, cell division prot 100.0 2.9E-36 1E-40 343.4 21.4 268 802-1078 7-291 (346)
230 3ll6_A Cyclin G-associated kin 100.0 7.3E-37 2.5E-41 347.4 16.3 253 805-1085 28-308 (337)
231 2clq_A Mitogen-activated prote 100.0 4.5E-36 1.5E-40 334.1 22.3 249 805-1078 22-278 (295)
232 2pml_X PFPK7, Ser/Thr protein 100.0 9.8E-37 3.4E-41 348.0 17.4 263 804-1078 30-322 (348)
233 2j7t_A Serine/threonine-protei 100.0 1.5E-36 5E-41 339.2 18.1 251 804-1078 18-275 (302)
234 2xrw_A Mitogen-activated prote 100.0 4.9E-36 1.7E-40 344.8 22.9 262 804-1078 24-318 (371)
235 3n9x_A Phosphotransferase; mal 100.0 3.5E-36 1.2E-40 353.0 21.6 198 804-1009 25-252 (432)
236 1u46_A ACK-1, activated CDC42 100.0 1.4E-36 4.7E-41 337.4 16.7 257 805-1086 18-285 (291)
237 2ycf_A Serine/threonine-protei 100.0 1.2E-36 4.1E-41 343.2 16.3 249 804-1078 9-274 (322)
238 2r3i_A Cell division protein k 100.0 5.6E-36 1.9E-40 334.0 21.5 265 805-1078 3-283 (299)
239 3fme_A Dual specificity mitoge 100.0 4.4E-36 1.5E-40 333.2 20.5 250 804-1078 6-266 (290)
240 3an0_A Dual specificity mitoge 100.0 3.4E-36 1.2E-40 342.3 19.7 252 803-1078 49-310 (340)
241 3nsz_A CK II alpha, casein kin 100.0 4.1E-36 1.4E-40 340.2 20.1 257 805-1078 36-319 (330)
242 2wtk_C Serine/threonine-protei 100.0 1.3E-35 4.4E-40 332.1 23.8 249 803-1078 3-263 (305)
243 1cm8_A Phosphorylated MAP kina 100.0 3.2E-36 1.1E-40 345.3 19.1 258 804-1078 24-307 (367)
244 2j0j_A Focal adhesion kinase 1 100.0 1.4E-36 4.8E-41 372.8 16.9 257 803-1085 388-651 (656)
245 2id5_A Lingo-1, leucine rich r 100.0 1.4E-35 4.7E-40 353.8 25.0 343 247-695 14-357 (477)
246 3q60_A ROP5B; pseudokinase, tr 100.0 1.2E-36 4E-41 350.2 14.9 254 805-1078 62-352 (371)
247 2vwi_A Serine/threonine-protei 100.0 2.3E-36 8E-41 337.7 16.9 260 803-1078 13-287 (303)
248 2x7f_A TRAF2 and NCK-interacti 100.0 2.4E-36 8.2E-41 341.5 16.9 255 799-1078 18-286 (326)
249 3eb0_A Putative uncharacterize 100.0 4.5E-36 1.5E-40 346.9 19.3 262 802-1078 4-321 (383)
250 3pg1_A Mitogen-activated prote 100.0 3.6E-36 1.2E-40 345.3 18.4 274 795-1078 12-316 (362)
251 3kvw_A DYRK2, dual specificity 100.0 6.6E-36 2.3E-40 349.8 20.5 202 804-1014 96-304 (429)
252 2wei_A Calmodulin-domain prote 100.0 1.6E-35 5.4E-40 328.2 22.0 256 803-1083 20-283 (287)
253 2y4i_B KSR2, HKSR2, kinase sup 100.0 4.3E-36 1.5E-40 338.3 15.4 258 802-1086 30-303 (319)
254 3qyz_A Mitogen-activated prote 100.0 8.2E-36 2.8E-40 342.2 17.8 266 804-1078 26-313 (364)
255 4e7w_A Glycogen synthase kinas 100.0 1E-35 3.4E-40 344.6 18.1 260 804-1078 39-321 (394)
256 2fst_X Mitogen-activated prote 100.0 1.5E-35 5E-40 339.4 19.0 258 804-1078 28-311 (367)
257 1blx_A Cyclin-dependent kinase 100.0 2E-35 6.9E-40 333.9 19.8 269 803-1078 9-296 (326)
258 3cek_A Dual specificity protei 100.0 2.6E-35 9.1E-40 330.8 20.6 253 803-1078 26-292 (313)
259 1z57_A Dual specificity protei 100.0 4.6E-35 1.6E-39 332.7 22.7 266 804-1078 13-328 (339)
260 2iwi_A Serine/threonine-protei 100.0 4.5E-36 1.5E-40 336.9 14.1 248 800-1078 26-283 (312)
261 3e3p_A Protein kinase, putativ 100.0 1.2E-35 4.1E-40 340.8 17.8 270 798-1078 16-314 (360)
262 3rgf_A Cyclin-dependent kinase 100.0 2E-35 7E-40 344.0 19.8 263 806-1078 21-333 (405)
263 1zy4_A Serine/threonine-protei 100.0 2.3E-35 7.9E-40 329.5 19.3 250 804-1078 5-283 (303)
264 1wak_A Serine/threonine-protei 100.0 1.6E-35 5.3E-40 344.7 18.4 267 804-1078 36-391 (397)
265 3o6n_A APL1; leucine-rich repe 100.0 7.7E-35 2.6E-39 337.7 24.0 350 56-476 2-354 (390)
266 1j1b_A Glycogen synthase kinas 100.0 1.7E-35 6E-40 345.5 18.6 258 805-1078 54-336 (420)
267 3fhr_A MAP kinase-activated pr 100.0 1.4E-35 4.8E-40 336.1 16.9 249 804-1078 27-287 (336)
268 2i6l_A Mitogen-activated prote 100.0 1.1E-35 3.8E-40 335.0 15.7 266 804-1078 10-305 (320)
269 3a99_A Proto-oncogene serine/t 100.0 5E-36 1.7E-40 337.6 12.6 244 802-1078 40-293 (320)
270 2b9h_A MAP kinase FUS3, mitoge 100.0 4.3E-35 1.5E-39 335.1 20.1 266 804-1078 10-305 (353)
271 2rio_A Serine/threonine-protei 100.0 3.7E-35 1.3E-39 344.2 19.9 250 805-1078 15-295 (434)
272 2vx3_A Dual specificity tyrosi 100.0 9.1E-35 3.1E-39 335.7 22.5 206 802-1014 51-263 (382)
273 3aln_A Dual specificity mitoge 100.0 3.5E-35 1.2E-39 332.0 18.5 253 805-1078 22-285 (327)
274 4exu_A Mitogen-activated prote 100.0 9.3E-35 3.2E-39 334.1 21.3 257 804-1078 41-323 (371)
275 3oja_B Anopheles plasmodium-re 100.0 1.7E-34 6E-39 353.3 24.6 350 54-477 6-361 (597)
276 2dyl_A Dual specificity mitoge 100.0 1.9E-34 6.6E-39 324.6 21.7 250 805-1078 25-283 (318)
277 1q8y_A SR protein kinase; tran 100.0 6.6E-35 2.2E-39 336.3 17.7 267 804-1078 18-333 (373)
278 2id5_A Lingo-1, leucine rich r 100.0 4.5E-34 1.5E-38 340.8 25.3 321 106-477 14-336 (477)
279 2eu9_A Dual specificity protei 100.0 3E-34 1E-38 328.3 22.5 266 804-1078 18-333 (355)
280 3qa8_A MGC80376 protein; kinas 100.0 4.8E-35 1.6E-39 351.4 16.0 271 804-1085 13-309 (676)
281 3coi_A Mitogen-activated prote 100.0 8.8E-35 3E-39 332.4 17.0 261 804-1078 23-305 (353)
282 3p23_A Serine/threonine-protei 100.0 1.9E-34 6.5E-39 337.0 19.7 248 805-1078 24-283 (432)
283 3o6n_A APL1; leucine-rich repe 100.0 1E-33 3.5E-38 328.3 25.7 316 235-695 60-375 (390)
284 3oja_B Anopheles plasmodium-re 100.0 1.5E-33 5.2E-38 344.9 25.6 316 235-696 66-382 (597)
285 3uqc_A Probable conserved tran 100.0 6.4E-34 2.2E-38 314.2 20.0 231 804-1085 30-265 (286)
286 1ogq_A PGIP-2, polygalacturona 100.0 1.1E-33 3.6E-38 317.0 17.5 252 365-695 50-305 (313)
287 3m2w_A MAP kinase-activated pr 100.0 3E-33 1E-37 311.8 19.8 229 805-1078 17-256 (299)
288 2pzi_A Probable serine/threoni 100.0 1.6E-33 5.6E-38 349.4 17.2 240 804-1084 79-327 (681)
289 4fmz_A Internalin; leucine ric 100.0 4.1E-32 1.4E-36 309.6 26.8 318 110-474 29-346 (347)
290 4fmz_A Internalin; leucine ric 100.0 9.5E-32 3.3E-36 306.6 25.6 308 98-450 39-346 (347)
291 3dzo_A Rhoptry kinase domain; 100.0 5.1E-33 1.7E-37 323.8 13.6 237 805-1077 78-362 (413)
292 2vuw_A Serine/threonine-protei 100.0 4.5E-33 1.5E-37 315.9 8.6 245 805-1077 20-329 (336)
293 4fcg_A Uncharacterized protein 100.0 7.3E-32 2.5E-36 303.9 17.7 276 30-350 23-311 (328)
294 2ft3_A Biglycan; proteoglycan, 100.0 2.2E-30 7.6E-35 293.1 25.5 294 244-667 33-330 (332)
295 1xku_A Decorin; proteoglycan, 100.0 6.1E-30 2.1E-34 289.3 26.5 198 244-475 31-230 (330)
296 1z7x_W Ribonuclease inhibitor; 100.0 7.2E-34 2.4E-38 337.6 -7.2 379 149-669 3-439 (461)
297 2ft3_A Biglycan; proteoglycan, 100.0 8.9E-30 3.1E-34 288.1 26.4 287 268-691 33-330 (332)
298 1z7x_W Ribonuclease inhibitor; 100.0 4E-34 1.4E-38 339.8 -10.3 376 80-478 4-444 (461)
299 1xku_A Decorin; proteoglycan, 100.0 2.7E-29 9.4E-34 283.9 27.9 289 268-668 31-330 (330)
300 3ogk_B Coronatine-insensitive 100.0 5.5E-32 1.9E-36 332.1 -4.3 409 32-475 16-477 (592)
301 3g06_A SSPH2 (leucine-rich rep 100.0 2.4E-28 8.1E-33 295.7 21.8 299 55-485 10-308 (622)
302 4fcg_A Uncharacterized protein 100.0 6.9E-28 2.3E-32 271.4 19.9 224 364-669 80-313 (328)
303 2z80_A TOLL-like receptor 2, v 100.0 3.2E-28 1.1E-32 277.9 16.2 280 247-675 34-318 (353)
304 3ogk_B Coronatine-insensitive 100.0 5.2E-30 1.8E-34 314.6 -0.1 335 118-472 64-447 (592)
305 2z80_A TOLL-like receptor 2, v 99.9 5E-28 1.7E-32 276.3 15.9 227 219-474 31-262 (353)
306 3zyj_A Leucine-rich repeat-con 99.9 5.7E-27 1.9E-31 275.9 23.5 231 244-476 64-294 (440)
307 3zyi_A Leucine-rich repeat-con 99.9 5.8E-27 2E-31 276.8 23.3 231 244-476 75-305 (452)
308 2z66_A Variable lymphocyte rec 99.9 9.3E-28 3.2E-32 268.3 14.7 248 178-476 11-263 (306)
309 2z66_A Variable lymphocyte rec 99.9 1.5E-27 5E-32 266.7 15.4 228 247-478 10-240 (306)
310 1ozn_A Reticulon 4 receptor; N 99.9 1.6E-26 5.4E-31 255.4 18.1 200 247-474 14-214 (285)
311 3g06_A SSPH2 (leucine-rich rep 99.9 8.6E-26 2.9E-30 273.3 25.5 268 245-657 41-308 (622)
312 1wwl_A Monocyte differentiatio 99.9 7.1E-28 2.4E-32 269.7 5.4 253 192-475 37-310 (312)
313 1wwl_A Monocyte differentiatio 99.9 1.4E-27 4.9E-32 267.2 6.9 262 57-352 21-308 (312)
314 3o53_A Protein LRIM1, AGAP0063 99.9 8.3E-28 2.8E-32 269.8 4.9 268 151-479 12-281 (317)
315 4azs_A Methyltransferase WBDD; 99.9 1.1E-27 3.6E-32 288.4 5.3 187 812-1009 241-438 (569)
316 1ozn_A Reticulon 4 receptor; N 99.9 3.8E-26 1.3E-30 252.3 15.7 218 239-482 51-269 (285)
317 3o53_A Protein LRIM1, AGAP0063 99.9 1.2E-26 4.2E-31 260.3 11.8 259 80-351 11-273 (317)
318 3zyi_A Leucine-rich repeat-con 99.9 2.8E-25 9.7E-30 262.3 23.9 247 151-450 56-303 (452)
319 3zyj_A Leucine-rich repeat-con 99.9 3.4E-25 1.1E-29 260.7 24.1 247 151-450 45-292 (440)
320 3oja_A Leucine-rich immune mol 99.9 1.6E-26 5.5E-31 274.4 10.1 83 389-474 99-182 (487)
321 2p1m_B Transport inhibitor res 99.9 6.1E-28 2.1E-32 296.3 -8.4 355 65-474 33-444 (594)
322 2p1m_B Transport inhibitor res 99.9 2.2E-28 7.5E-33 300.3 -12.6 352 100-473 102-493 (594)
323 3oja_A Leucine-rich immune mol 99.9 6.5E-25 2.2E-29 260.7 15.8 248 87-347 18-269 (487)
324 2o6q_A Variable lymphocyte rec 99.9 8.9E-24 3E-28 231.2 21.6 217 64-331 2-220 (270)
325 2z62_A TOLL-like receptor 4, v 99.9 5.2E-24 1.8E-28 234.0 18.9 208 269-478 29-241 (276)
326 3rfs_A Internalin B, repeat mo 99.9 3.4E-24 1.2E-28 234.7 14.3 228 219-485 19-246 (272)
327 2o6q_A Variable lymphocyte rec 99.9 9.3E-23 3.2E-27 223.0 23.2 206 245-478 17-222 (270)
328 3rfs_A Internalin B, repeat mo 99.9 1.1E-23 3.7E-28 230.7 13.7 228 175-462 20-247 (272)
329 2z62_A TOLL-like receptor 4, v 99.9 4.5E-23 1.5E-27 226.5 17.4 207 245-452 29-239 (276)
330 3en9_A Glycoprotease, O-sialog 99.9 2.3E-24 8E-29 257.9 6.2 185 808-1010 339-539 (540)
331 1p9a_G Platelet glycoprotein I 99.9 1.9E-22 6.6E-27 222.5 21.1 206 239-476 5-210 (290)
332 1p9a_G Platelet glycoprotein I 99.9 1.5E-22 5.1E-27 223.4 19.8 202 362-671 7-209 (290)
333 4glp_A Monocyte differentiatio 99.9 4.7E-23 1.6E-27 230.3 11.1 229 220-475 65-308 (310)
334 3goz_A Leucine-rich repeat-con 99.9 6E-24 2.1E-28 243.1 2.8 224 250-474 4-266 (362)
335 3goz_A Leucine-rich repeat-con 99.9 6.9E-24 2.3E-28 242.6 3.2 265 179-482 3-305 (362)
336 2ca6_A RAN GTPase-activating p 99.9 7.5E-24 2.6E-28 244.8 0.2 239 240-478 28-320 (386)
337 4glp_A Monocyte differentiatio 99.9 1.6E-22 5.6E-27 225.9 10.8 226 199-451 65-308 (310)
338 2ast_B S-phase kinase-associat 99.9 4.3E-23 1.5E-27 233.7 5.7 233 246-483 72-315 (336)
339 2ast_B S-phase kinase-associat 99.9 5.2E-23 1.8E-27 233.1 4.3 255 199-459 48-315 (336)
340 2ca6_A RAN GTPase-activating p 99.9 1.7E-23 5.9E-28 241.8 0.2 206 265-470 91-339 (386)
341 3m19_A Variable lymphocyte rec 99.9 7E-21 2.4E-25 205.7 19.8 178 271-476 17-194 (251)
342 1h6u_A Internalin H; cell adhe 99.9 3.9E-21 1.3E-25 214.2 17.3 213 223-480 23-235 (308)
343 3cvr_A Invasion plasmid antige 99.9 1.5E-21 5.1E-26 233.3 13.3 189 366-658 60-255 (571)
344 3m19_A Variable lymphocyte rec 99.8 1.8E-20 6.1E-25 202.5 20.2 180 245-452 15-194 (251)
345 2xwt_C Thyrotropin receptor; s 99.8 3.9E-21 1.3E-25 206.1 13.9 197 269-472 32-237 (239)
346 3cvr_A Invasion plasmid antige 99.8 5.2E-21 1.8E-25 228.5 14.3 211 56-341 32-255 (571)
347 2xwt_C Thyrotropin receptor; s 99.8 5.9E-21 2E-25 204.7 12.6 197 245-447 32-236 (239)
348 1zar_A RIO2 kinase; serine kin 99.8 2E-21 6.7E-26 213.0 7.4 153 797-982 82-252 (282)
349 1h6u_A Internalin H; cell adhe 99.8 4.5E-20 1.6E-24 205.6 18.5 178 239-456 58-235 (308)
350 4ay9_X Follicle-stimulating ho 99.8 2.5E-20 8.6E-25 211.8 16.3 225 244-473 30-258 (350)
351 4ay9_X Follicle-stimulating ho 99.8 3.2E-20 1.1E-24 211.0 14.2 241 152-448 12-257 (350)
352 2o6s_A Variable lymphocyte rec 99.8 8E-20 2.7E-24 191.3 16.1 181 247-462 10-190 (208)
353 2o6s_A Variable lymphocyte rec 99.8 1.7E-19 5.9E-24 188.8 15.0 181 271-486 10-190 (208)
354 1m9s_A Internalin B; cell inva 99.8 1.5E-18 5.1E-23 209.8 14.4 171 242-427 41-211 (605)
355 4b8c_D Glucose-repressible alc 99.8 1.7E-19 5.7E-24 223.9 5.3 82 582-669 312-403 (727)
356 1h6t_A Internalin B; cell adhe 99.8 3.2E-18 1.1E-22 188.9 14.5 189 220-450 25-213 (291)
357 1m9s_A Internalin B; cell inva 99.8 1.2E-18 4E-23 210.7 11.7 192 81-333 23-214 (605)
358 1h6t_A Internalin B; cell adhe 99.8 2.3E-18 7.9E-23 190.0 12.4 191 197-427 23-214 (291)
359 4b8c_D Glucose-repressible alc 99.7 3.7E-19 1.3E-23 220.8 5.8 209 31-338 129-338 (727)
360 2v70_A SLIT-2, SLIT homolog 2 99.7 6.5E-18 2.2E-22 178.1 13.5 157 295-478 14-170 (220)
361 2xot_A Amphoterin-induced prot 99.7 4.5E-18 1.5E-22 194.0 12.8 175 272-475 22-203 (361)
362 2v9t_B SLIT homolog 2 protein 99.7 1.5E-17 5E-22 175.4 15.1 113 363-475 54-166 (220)
363 1dce_A Protein (RAB geranylger 99.7 4.4E-20 1.5E-24 221.9 -5.6 217 124-372 346-567 (567)
364 2v70_A SLIT-2, SLIT homolog 2 99.7 2.4E-17 8.1E-22 173.8 15.6 134 294-452 34-168 (220)
365 3e6j_A Variable lymphocyte rec 99.7 3.7E-17 1.3E-21 173.5 16.7 115 363-478 62-176 (229)
366 2v9t_B SLIT homolog 2 protein 99.7 3.2E-17 1.1E-21 172.7 15.7 86 365-450 80-165 (220)
367 2xot_A Amphoterin-induced prot 99.7 1.2E-17 4E-22 190.6 12.5 178 246-451 20-203 (361)
368 3e6j_A Variable lymphocyte rec 99.7 7E-17 2.4E-21 171.4 16.5 87 364-451 87-173 (229)
369 1zth_A RIO1 serine protein kin 99.7 1.2E-17 4.2E-22 180.6 9.6 137 806-958 48-219 (258)
370 4ezg_A Putative uncharacterize 99.7 3.8E-17 1.3E-21 169.2 11.1 154 289-475 41-195 (197)
371 1dce_A Protein (RAB geranylger 99.7 6.1E-19 2.1E-23 212.0 -4.3 190 265-478 346-550 (567)
372 1xeu_A Internalin C; cellular 99.7 2.1E-17 7.3E-22 179.3 6.7 80 389-474 106-185 (263)
373 4ezg_A Putative uncharacterize 99.7 1.5E-16 5E-21 164.8 12.5 152 242-426 42-194 (197)
374 1xeu_A Internalin C; cellular 99.7 5.9E-17 2E-21 175.8 8.9 170 218-428 18-187 (263)
375 3sb4_A Hypothetical leucine ri 99.6 1.6E-16 5.3E-21 178.9 8.1 260 197-468 48-328 (329)
376 1w8a_A SLIT protein; signaling 99.6 1.2E-15 4E-20 157.1 11.8 114 366-479 30-144 (192)
377 3sb4_A Hypothetical leucine ri 99.6 7.5E-16 2.6E-20 173.3 9.7 283 126-444 24-328 (329)
378 1w8a_A SLIT protein; signaling 99.6 1.7E-15 5.8E-20 155.9 9.7 64 365-428 78-141 (192)
379 4gyi_A RIO2 kinase; protein ki 99.6 3.1E-16 1E-20 175.4 4.4 141 802-959 92-266 (397)
380 2ell_A Acidic leucine-rich nuc 99.6 5.5E-15 1.9E-19 148.6 10.9 90 384-474 66-160 (168)
381 2ell_A Acidic leucine-rich nuc 99.6 7.6E-15 2.6E-19 147.6 11.4 84 244-329 24-108 (168)
382 2wfh_A SLIT homolog 2 protein 99.6 1.7E-14 5.9E-19 148.3 13.2 111 365-476 31-141 (193)
383 2o6r_A Variable lymphocyte rec 99.5 2.3E-14 7.8E-19 145.4 12.9 114 365-478 28-141 (177)
384 4fdw_A Leucine rich hypothetic 99.5 1.9E-13 6.4E-18 157.0 20.1 229 235-474 149-383 (401)
385 2wfh_A SLIT homolog 2 protein 99.5 3.9E-14 1.3E-18 145.6 12.9 105 566-671 35-140 (193)
386 2je0_A Acidic leucine-rich nuc 99.5 2E-14 6.7E-19 141.3 9.7 85 244-330 17-102 (149)
387 2je0_A Acidic leucine-rich nuc 99.5 1.2E-14 4E-19 143.0 7.4 105 363-469 40-148 (149)
388 4fdw_A Leucine rich hypothetic 99.5 3.9E-13 1.3E-17 154.4 20.9 224 176-450 159-383 (401)
389 2o6r_A Variable lymphocyte rec 99.5 1.2E-13 4.3E-18 139.9 13.6 87 366-452 53-139 (177)
390 1ds9_A Outer arm dynein; leuci 99.5 1.4E-15 4.9E-20 157.4 -4.9 84 388-474 17-106 (198)
391 4fs7_A Uncharacterized protein 99.4 3.9E-12 1.3E-16 146.7 21.3 333 91-466 59-393 (394)
392 3g39_A Variable lymphocyte rec 99.4 5.3E-13 1.8E-17 134.1 11.8 110 366-478 10-119 (170)
393 1a9n_A U2A', U2A'; complex (nu 99.4 1.4E-13 4.7E-18 139.4 7.1 105 366-474 43-153 (176)
394 1a9n_A U2A', U2A'; complex (nu 99.4 3E-13 1E-17 136.9 9.2 131 265-426 16-153 (176)
395 1ds9_A Outer arm dynein; leuci 99.4 2.1E-15 7E-20 156.2 -7.4 152 290-474 16-185 (198)
396 2r9u_A Variable lymphocyte rec 99.4 9.7E-13 3.3E-17 132.6 12.3 112 367-482 14-125 (174)
397 3g39_A Variable lymphocyte rec 99.4 8.9E-13 3E-17 132.4 10.6 103 565-670 12-115 (170)
398 2r9u_A Variable lymphocyte rec 99.4 1.5E-12 5.1E-17 131.2 10.7 103 565-670 15-118 (174)
399 4fs7_A Uncharacterized protein 99.3 2.8E-11 9.5E-16 139.5 20.2 316 115-471 59-376 (394)
400 3un9_A NLR family member X1; l 99.2 4.3E-13 1.5E-17 152.5 -1.5 75 264-338 179-261 (372)
401 2ifg_A High affinity nerve gro 99.2 3.8E-11 1.3E-15 135.9 10.0 103 566-671 12-117 (347)
402 3tm0_A Aminoglycoside 3'-phosp 99.2 8.5E-11 2.9E-15 127.3 12.2 147 802-957 11-213 (263)
403 3un9_A NLR family member X1; l 99.2 9.4E-13 3.2E-17 149.7 -4.0 159 291-474 71-252 (372)
404 2ifg_A High affinity nerve gro 99.2 6.4E-11 2.2E-15 134.0 10.5 106 368-476 11-118 (347)
405 4gt6_A Cell surface protein; l 99.1 3.3E-09 1.1E-13 122.1 21.1 328 96-473 56-390 (394)
406 4gt6_A Cell surface protein; l 99.1 4.7E-09 1.6E-13 120.8 21.6 319 81-425 66-390 (394)
407 1nd4_A Aminoglycoside 3'-phosp 98.9 9.9E-10 3.4E-14 118.7 8.1 138 806-957 21-214 (264)
408 2ra8_A Uncharacterized protein 98.8 1.2E-09 3.9E-14 123.1 2.9 181 264-472 135-341 (362)
409 3dxp_A Putative acyl-COA dehyd 98.8 1E-08 3.4E-13 116.4 9.9 144 809-957 42-248 (359)
410 3sg8_A APH(2'')-ID; antibiotic 98.8 3.4E-09 1.2E-13 117.3 5.7 188 810-1011 25-289 (304)
411 2ra8_A Uncharacterized protein 98.7 4E-09 1.4E-13 118.6 4.5 140 332-475 164-321 (362)
412 4h09_A Hypothetical leucine ri 98.7 5.9E-07 2E-11 102.6 22.1 100 359-461 257-356 (379)
413 4h09_A Hypothetical leucine ri 98.7 8.4E-07 2.9E-11 101.3 22.8 111 358-471 233-343 (379)
414 3rw6_A Nuclear RNA export fact 98.6 2.7E-09 9.2E-14 113.7 -0.8 158 65-225 76-257 (267)
415 1io0_A Tropomodulin; LRR prote 98.5 8.8E-09 3E-13 104.6 -1.8 118 94-211 27-164 (185)
416 3r70_A Aminoglycoside phosphot 98.3 1.5E-06 5.1E-11 96.6 11.7 140 806-958 38-238 (320)
417 1io0_A Tropomodulin; LRR prote 98.3 8.8E-08 3E-12 97.1 1.2 52 119-170 28-86 (185)
418 3rw6_A Nuclear RNA export fact 98.3 1.2E-07 4E-12 101.0 0.2 80 265-346 167-257 (267)
419 3d1u_A Putative fructosamine-3 98.2 4.3E-06 1.5E-10 90.9 11.1 79 809-892 19-97 (288)
420 4gkh_A Aminoglycoside 3'-phosp 98.2 1.1E-05 3.9E-10 87.1 13.0 137 811-957 30-223 (272)
421 3tdw_A Gentamicin resistance p 98.1 1.1E-05 3.7E-10 88.9 12.3 139 810-957 24-224 (306)
422 3ovc_A Hygromycin-B 4-O-kinase 97.9 3.3E-05 1.1E-09 87.1 11.3 143 807-958 43-244 (362)
423 3ats_A Putative uncharacterize 97.9 9.1E-06 3.1E-10 91.8 6.2 82 811-893 26-121 (357)
424 3e4g_A ATP synthase subunit S, 97.8 6.9E-06 2.4E-10 80.9 2.4 89 103-212 61-154 (176)
425 2olc_A MTR kinase, methylthior 97.6 0.00013 4.6E-09 83.4 10.0 77 810-890 35-120 (397)
426 1pgv_A TMD-1, tropomodulin TMD 97.6 5.3E-06 1.8E-10 83.4 -1.9 116 95-210 33-169 (197)
427 3e4g_A ATP synthase subunit S, 97.6 3.4E-05 1.1E-09 76.0 3.8 34 269-302 62-95 (176)
428 3f7w_A Putative fructosamine-3 97.5 0.00049 1.7E-08 74.8 13.0 78 807-891 17-96 (288)
429 2pyw_A Uncharacterized protein 97.5 0.00014 4.6E-09 84.0 9.0 77 927-1005 232-312 (420)
430 2q83_A YTAA protein; 2635576, 97.5 0.00061 2.1E-08 76.1 13.7 142 811-957 38-252 (346)
431 1pgv_A TMD-1, tropomodulin TMD 97.4 4.9E-05 1.7E-09 76.4 2.0 70 122-212 36-112 (197)
432 3jr1_A Putative fructosamine-3 97.4 0.00046 1.6E-08 75.5 9.8 138 810-953 41-232 (312)
433 3rfe_A Platelet glycoprotein I 96.9 0.00098 3.4E-08 62.5 6.2 57 613-671 12-69 (130)
434 3csv_A Aminoglycoside phosphot 96.8 0.0065 2.2E-07 67.3 12.2 32 927-958 183-218 (333)
435 2ppq_A HSK, HK, homoserine kin 96.7 0.011 3.8E-07 65.1 13.8 161 794-957 6-217 (322)
436 1zyl_A Hypothetical protein YI 96.7 0.0051 1.8E-07 68.0 10.4 143 811-957 32-223 (328)
437 3dxq_A Choline/ethanolamine ki 96.5 0.021 7.1E-07 62.2 13.6 30 928-958 174-203 (301)
438 2yle_A Protein spire homolog 1 96.4 0.016 5.6E-07 58.2 10.7 101 891-1008 34-135 (229)
439 3feg_A Choline/ethanolamine ki 96.4 0.0048 1.7E-07 69.3 7.8 139 811-957 56-254 (379)
440 3rfe_A Platelet glycoprotein I 96.3 0.0053 1.8E-07 57.4 6.6 58 416-475 11-69 (130)
441 3i1a_A Spectinomycin phosphotr 96.2 0.025 8.5E-07 62.7 12.6 32 927-958 206-237 (339)
442 1nw1_A Choline kinase (49.2 KD 96.2 0.0082 2.8E-07 69.0 8.3 72 811-891 79-158 (429)
443 2qg7_A Ethanolamine kinase PV0 95.9 0.026 8.8E-07 65.2 10.6 74 811-892 114-188 (458)
444 3c5i_A Choline kinase; choline 95.3 0.019 6.4E-07 64.6 6.8 30 927-957 212-241 (369)
445 3f2s_A CK, chetk-alpha, cholin 94.9 0.05 1.7E-06 61.3 8.6 30 928-957 245-280 (401)
446 3mes_A Choline kinase; malaria 93.2 0.15 5.2E-06 57.9 8.2 29 928-957 263-291 (424)
447 4ann_A ESSB; membrane protein, 88.6 0.55 1.9E-05 47.2 6.0 124 850-1010 35-158 (215)
448 4ano_A ESSB; membrane protein, 86.6 2.8 9.6E-05 42.3 9.7 115 863-1010 48-163 (219)
449 3g15_A CK, chetk-alpha, cholin 86.0 1.8 6.3E-05 48.7 9.2 30 928-957 245-280 (401)
450 2jwa_A Receptor tyrosine-prote 77.8 4 0.00014 29.2 4.8 16 738-753 25-40 (44)
451 2l8s_A Integrin alpha-1; trans 60.5 15 0.00051 27.5 4.9 24 725-748 9-32 (54)
452 2k1k_A Ephrin type-A receptor 50.6 27 0.00091 24.2 4.6 21 728-748 16-36 (38)
453 3ls8_A Phosphatidylinositol 3- 45.4 1.6E+02 0.0055 34.4 13.0 46 904-956 454-501 (614)
454 3cxl_A N-chimerin; SH2, RHO-GA 44.5 2.9 9.8E-05 48.0 -1.8 59 810-875 147-214 (463)
455 2x6h_A GH13170P, VPS34, phosph 42.9 1.6E+02 0.0054 35.1 12.7 44 906-956 530-575 (696)
456 2knc_A Integrin alpha-IIB; tra 39.9 56 0.0019 24.6 5.2 25 724-748 11-35 (54)
457 2k1a_A Integrin alpha-IIB; sin 37.3 62 0.0021 22.9 4.8 26 724-749 9-34 (42)
458 1zza_A Stannin, AG8_1; helix, 36.6 48 0.0016 26.0 4.5 26 727-752 15-40 (90)
459 2ks1_B Epidermal growth factor 30.6 1.1E+02 0.0037 21.9 5.2 14 744-757 28-41 (44)
460 2lz0_A Uncharacterized protein 30.6 81 0.0028 27.1 5.8 25 184-208 6-30 (100)
461 1iij_A ERBB-2 receptor protein 30.5 19 0.00065 24.3 1.2 6 744-749 27-32 (35)
462 2lz0_A Uncharacterized protein 30.5 52 0.0018 28.3 4.5 44 115-158 8-52 (100)
463 3hhm_A Phosphatidylinositol-4, 29.3 1.3E+02 0.0043 37.8 9.1 59 891-956 899-961 (1091)
464 2l2t_A Receptor tyrosine-prote 25.1 69 0.0024 22.9 3.4 14 744-757 27-40 (44)
465 1pi7_A VPU protein, U ORF prot 23.2 71 0.0024 21.8 3.0 21 728-748 7-27 (36)
466 2knc_B Integrin beta-3; transm 22.4 80 0.0027 25.9 3.8 19 729-747 14-32 (79)
467 2k9j_B Integrin beta-3; transm 20.8 85 0.0029 22.3 3.2 24 726-749 10-33 (43)
468 2knc_A Integrin alpha-IIB; tra 20.2 1.5E+02 0.005 22.3 4.4 29 722-750 13-41 (54)
469 1cja_A Protein (actin-fragmin 20.0 1.3E+02 0.0044 32.2 5.9 135 811-957 75-237 (342)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.5e-80 Score=780.24 Aligned_cols=657 Identities=30% Similarity=0.496 Sum_probs=471.9
Q ss_pred cCCCchhhHHHHHHHHhhcccCCCCCcccccccCCCCCCcccCCceeCCCCceeEEecccccccccc---cc--------
Q 001384 28 AGDSLETDREVLSNLRSFLENNNPVNEGHYMQWNQSSSPCEWPGIICSPDKARVNGLNLTDWNISGD---IF-------- 96 (1088)
Q Consensus 28 ~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~~sW~~~~~~C~W~gv~C~~~~~~v~~L~L~~~~l~~~---~~-------- 96 (1088)
++.+.++|++||++||+.+.+ +. .++||+.++|||.|.||+|+ .+||++|+|+++++.|. ++
T Consensus 6 ~~~~~~~~~~all~~k~~~~~----~~-~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~ 78 (768)
T 3rgz_A 6 PSQSLYREIHQLISFKDVLPD----KN-LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTG 78 (768)
T ss_dssp --CCHHHHHHHHHHHHTTCSC----TT-SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTT
T ss_pred cccCCHHHHHHHHHHHhhCCC----cc-cccCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCc
Confidence 444478899999999999963 23 79999988999999999998 68999999999999886 43
Q ss_pred ---------------ccccCCccCCeeeCCCCCCCCCcCc--cCCCCCCCcEEECccccccCccc---CCCCCCCceeec
Q 001384 97 ---------------NNFSALTQLSYLDLSRNTFSGSIPD--DLSSCRSLKYLNLSHNILSGDLN---LSGLRSLEILDL 156 (1088)
Q Consensus 97 ---------------~~l~~l~~L~~L~Ls~n~l~~~~p~--~l~~l~~L~~L~Ls~n~l~~~~~---l~~l~~L~~L~L 156 (1088)
+.++.+++|++|||++|.++|.+|. .++++++|++|+|++|.+++..+ +.++++|++|||
T Consensus 79 L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L 158 (768)
T 3rgz_A 79 LESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDL 158 (768)
T ss_dssp CCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEEC
T ss_pred ccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEEC
Confidence 4678889999999999999998888 89999999999999998876443 256777777777
Q ss_pred ccccccccccCch--h----------------------hhcccceEEeccCccCCCCCCccccCCCCCcEEEccCccccc
Q 001384 157 SVNRIHGEISFSF--P----------------------AICEKLVVANLSLNNLTGRIDTCFDGCLNLRYLDLSSNNFRG 212 (1088)
Q Consensus 157 s~N~l~~~~~~~~--~----------------------~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~ 212 (1088)
++|++++..+..+ . ..+++|++|+|++|++++.+|. ++++++|++|+|++|++++
T Consensus 159 s~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~ 237 (768)
T 3rgz_A 159 SANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSG 237 (768)
T ss_dssp CSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCS
T ss_pred CCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCC
Confidence 7777766554331 1 2356677777777777777766 7778888888888888776
Q ss_pred cc---cccCcccceecccCcccccccccccccCCCccCEEEcCCCcccccCcccccCC-CCCcEEEccCccccCCCcccc
Q 001384 213 NI---WNGLAQLVEFSVSENVLSGVVSSSVFKENCSLEIFDLSENEFIGDFPGEVSNC-RNLVVLNLFGNNFSGPIPAEI 288 (1088)
Q Consensus 213 ~~---~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l-~~L~~L~L~~N~l~~~~p~~~ 288 (1088)
.+ +..+++|++|++++|.+++.++.. .+++|++|+|++|++++.+|..+..+ ++|++|+|++|++++.+|..|
T Consensus 238 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~ 314 (768)
T 3rgz_A 238 DFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF 314 (768)
T ss_dssp CHHHHTTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGG
T ss_pred cccHHHhcCCCCCEEECCCCcccCccCcc---ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHH
Confidence 44 345677778888888777665543 56778888888888877777777664 888888888888887788888
Q ss_pred CCCCCCCEEeCCCCcCCccCccc-ccCCCCCcEEEcCCCcCCCchhHhhhccc-ccceeecCcCcccCCCCCccccC--C
Q 001384 289 GSISGLEALFLGKNNFLSVIPES-LLNLSKLEVLDLSSNNFGGEVQKIFGRFT-QVKILALHSNSYIDGMNSSGILK--L 364 (1088)
Q Consensus 289 ~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~~n~~~~~~~~~~~~~--l 364 (1088)
+.+++|++|+|++|++++.+|.. +.++++|++|+|++|.+++.+|..+..++ +|+.|++++|.+....... +.. +
T Consensus 315 ~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~-~~~~~~ 393 (768)
T 3rgz_A 315 GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN-LCQNPK 393 (768)
T ss_dssp GGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTT-TTCSTT
T ss_pred hcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChh-hhhccc
Confidence 88888888888888887667765 77888888888888888777777777776 7777777777654333222 222 5
Q ss_pred CCcCEEEccCCccCCCCCccccCCcCcceeeccccccCCcCCcccCCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEc
Q 001384 365 PNISRLDLSHNNFTGPLPVEISQMRSLKFLILAHNRFNGSIPAVYGNMPNLQTLDLSFNELTGPIPPSIGNLTSLLWLML 444 (1088)
Q Consensus 365 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 444 (1088)
++|++|++++|++++.+|..++++++|++|++++|++++.+|..++.+++|+.|++++|++++.+|..++.+++|++|+|
T Consensus 394 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 473 (768)
T 3rgz_A 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 473 (768)
T ss_dssp CCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred CCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEe
Confidence 56666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred cccccccCCCccccCCCCCCeEEccCCcCccCCCchhhccCCCCCccccccccCCccccc----CCccccccccc-cCCC
Q 001384 445 ANNSLSGEIPGEIGNCTSLLWLNLSNNKLSGNIPPEVMTIGRNARPTFEANQRNGERTIA----GSSECLSMKRW-IPAD 519 (1088)
Q Consensus 445 ~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~~~~~~~~~~~~~~~n~~~~~~~~~----~~~~~~~~~~~-~~~~ 519 (1088)
++|+++|.+|..++++++|++|+|++|+++|.+|..+..+.++..+.+..|.+.+..... ...+.+++... +...
T Consensus 474 ~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ 553 (768)
T 3rgz_A 474 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT 553 (768)
T ss_dssp CSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESB
T ss_pred cCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCc
Confidence 666666666666666666666666666666666666666666666666666554322100 00000000000 0000
Q ss_pred CCCCcceeeehhccccchhhhhcccCCccc----cc-------------ccCC---CcccceeeeceEEccCCccccccC
Q 001384 520 YPPFSFVYTILTRKSCRSLWDRLLKGTGIF----PV-------------CLPG---LASRTFQITGYLQLSGNQLSGELS 579 (1088)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~-------------~l~~---~~~~~~~~l~~L~l~~N~l~g~~p 579 (1088)
.|...+ .+.......+.....+ .. ...+ .....+.....++++.|.++|.+|
T Consensus 554 ip~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~ 625 (768)
T 3rgz_A 554 IPAAMF--------KQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTS 625 (768)
T ss_dssp CCGGGG--------TTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECC
T ss_pred CChHHh--------cccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCc
Confidence 000000 0000000000000000 00 0000 000111222345677899999999
Q ss_pred cccccCCCccEEeccccccccCCCCcccCc-cceEEEccCCcccccCCccccCCccCcEEEccccccCCcCCcccccccc
Q 001384 580 PDIGKLQNFSMVHLGFNQFDGKLPSQFDQL-PLIVLNLTRNNFSGEIPSEFGNIKCLQNLDLSYNNFSGPFPASFNNLTE 658 (1088)
Q Consensus 580 ~~~~~l~~L~~L~l~~N~l~g~~p~~~~~l-~l~~l~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~l~~ 658 (1088)
..++.+++|+.|||++|+++|.+|..++.+ .|+.|+|++|+++|.||.+|+++++|+.|||++|+++|.+|..++++++
T Consensus 626 ~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~ 705 (768)
T 3rgz_A 626 PTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM 705 (768)
T ss_dssp CSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCC
T ss_pred hhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCC
Confidence 999999999999999999999999999999 6999999999999999999999999999999999999999999999999
Q ss_pred cceeeccCCCCccccCCCCCcccccccCccCCCCCCCCCCccCCCCCCCCCCC
Q 001384 659 LSKLNISYNPLVSGTIPSTGQLATFEKTSYLGDPLLDLPDFIENGPHHGHKYP 711 (1088)
Q Consensus 659 L~~l~l~~N~l~~g~ip~~~~~~~~~~~~~~~n~~~~~P~~~~~~p~~~~~~~ 711 (1088)
|+.|||++|++ +|.||+.+++.+|...+|.||+.+| |.+ ...|...
T Consensus 706 L~~L~ls~N~l-~g~iP~~~~~~~~~~~~~~gN~~Lc--g~~----l~~C~~~ 751 (768)
T 3rgz_A 706 LTEIDLSNNNL-SGPIPEMGQFETFPPAKFLNNPGLC--GYP----LPRCDPS 751 (768)
T ss_dssp CSEEECCSSEE-EEECCSSSSGGGSCGGGGCSCTEEE--STT----SCCCCSC
T ss_pred CCEEECcCCcc-cccCCCchhhccCCHHHhcCCchhc--CCC----CcCCCCC
Confidence 99999999999 8999999999999999999999999 543 3367543
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.1e-64 Score=639.02 Aligned_cols=585 Identities=32% Similarity=0.448 Sum_probs=470.9
Q ss_pred ceeEEeccccccccccccc--cccCCccCCeeeCCCCCCCCCcCccC-CCCCCCcEEECcccccc---------------
Q 001384 79 ARVNGLNLTDWNISGDIFN--NFSALTQLSYLDLSRNTFSGSIPDDL-SSCRSLKYLNLSHNILS--------------- 140 (1088)
Q Consensus 79 ~~v~~L~L~~~~l~~~~~~--~l~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~--------------- 140 (1088)
.+.+.|+|++|.++|.++. .++++++|++|||++|.+++.+|..+ .++++|++|+|++|.++
T Consensus 100 ~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~ 179 (768)
T 3rgz_A 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGE 179 (768)
T ss_dssp TTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTT
T ss_pred CCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCC
Confidence 4677899999999998888 89999999999999999888877665 56666666666666554
Q ss_pred ------------CcccCCCCCCCceeecccccccccccCchhhhcccceEEeccCccCCCCCCccccCCCCCcEEEccCc
Q 001384 141 ------------GDLNLSGLRSLEILDLSVNRIHGEISFSFPAICEKLVVANLSLNNLTGRIDTCFDGCLNLRYLDLSSN 208 (1088)
Q Consensus 141 ------------~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N 208 (1088)
+..++..+++|++|+|++|++++.+|. ...+++|++|+|++|++++.+|..+.++++|++|+|++|
T Consensus 180 L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n 257 (768)
T 3rgz_A 180 LKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN 257 (768)
T ss_dssp CCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB--CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSS
T ss_pred CCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc--cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCC
Confidence 333446778888888888888877776 456789999999999999999999999999999999999
Q ss_pred cccccccc-cCcccceecccCcccccccccccccCCCccCEEEcCCCcccccCcccccCCCCCcEEEccCccccCCCccc
Q 001384 209 NFRGNIWN-GLAQLVEFSVSENVLSGVVSSSVFKENCSLEIFDLSENEFIGDFPGEVSNCRNLVVLNLFGNNFSGPIPAE 287 (1088)
Q Consensus 209 ~l~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~ 287 (1088)
++++.++. .+++|++|++++|.+++.++...+..+++|++|+|++|++++.+|..++++++|++|+|++|+++|.+|..
T Consensus 258 ~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~ 337 (768)
T 3rgz_A 258 QFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD 337 (768)
T ss_dssp CCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHH
T ss_pred cccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHH
Confidence 99875543 68899999999999999888887777799999999999999999999999999999999999999888876
Q ss_pred -cCCCCCCCEEeCCCCcCCccCcccccCCC-CCcEEEcCCCcCCCchhHhhhc--ccccceeecCcCcccCCCCCccccC
Q 001384 288 -IGSISGLEALFLGKNNFLSVIPESLLNLS-KLEVLDLSSNNFGGEVQKIFGR--FTQVKILALHSNSYIDGMNSSGILK 363 (1088)
Q Consensus 288 -~~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~L~~N~l~~~~~~~~~~--l~~L~~L~L~~n~~~~~~~~~~~~~ 363 (1088)
++.+++|++|+|++|.+++.+|..+.+++ +|++|+|++|.+++..+..+.. +++|+.|++++|.+.. ..+..+..
T Consensus 338 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~p~~l~~ 416 (768)
T 3rgz_A 338 TLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG-KIPPTLSN 416 (768)
T ss_dssp HHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEE-ECCGGGGG
T ss_pred HHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcccc-ccCHHHhc
Confidence 89999999999999999989999998887 8999999999998888777766 7888999998887643 34566788
Q ss_pred CCCcCEEEccCCccCCCCCccccCCcCcceeeccccccCCcCCcccCCCCCCcEEEccCCcCCCCCCccccCCCCCcEEE
Q 001384 364 LPNISRLDLSHNNFTGPLPVEISQMRSLKFLILAHNRFNGSIPAVYGNMPNLQTLDLSFNELTGPIPPSIGNLTSLLWLM 443 (1088)
Q Consensus 364 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 443 (1088)
+++|++|+|++|++++.+|..++.+++|+.|++++|++++.+|..++.+++|++|++++|++++.+|..++++++|++|+
T Consensus 417 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 496 (768)
T 3rgz_A 417 CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWIS 496 (768)
T ss_dssp CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred CCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEE
Confidence 88899999999988888888888888899999999988888888888888899999999998888888888888899999
Q ss_pred ccccccccCCCccccCCCCCCeEEccCCcCccCCCchhhccCCCCCccccccccCCcccccCCcccccccc--ccC----
Q 001384 444 LANNSLSGEIPGEIGNCTSLLWLNLSNNKLSGNIPPEVMTIGRNARPTFEANQRNGERTIAGSSECLSMKR--WIP---- 517 (1088)
Q Consensus 444 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~~~---- 517 (1088)
|++|+++|.+|..++++++|++|+|++|+++|.+|..+..+.++..+.+..|.+.+.....-.. ...... ...
T Consensus 497 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~~~~~~~~~~~~~~ 575 (768)
T 3rgz_A 497 LSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK-QSGKIAANFIAGKRY 575 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGT-TTTCBCCSTTCSCEE
T ss_pred ccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhc-ccchhhhhccccccc
Confidence 9999988888888888888999999999998888888888888888888888776543321100 000000 000
Q ss_pred ----C----CCCCCc-ceeee--hhccccchhhhhc------ccCCcccccccCCCcccceeeeceEEccCCccccccCc
Q 001384 518 ----A----DYPPFS-FVYTI--LTRKSCRSLWDRL------LKGTGIFPVCLPGLASRTFQITGYLQLSGNQLSGELSP 580 (1088)
Q Consensus 518 ----~----~~~~~~-~~~~~--~~~~~~~~l~~~~------~~~~~~~~~~l~~~~~~~~~~l~~L~l~~N~l~g~~p~ 580 (1088)
. ...... ..... ........+.... ..-.+..|..+ ..+..+++|+|++|+++|.+|.
T Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~-----~~l~~L~~LdLs~N~l~g~ip~ 650 (768)
T 3rgz_A 576 VYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF-----DNNGSMMFLDMSYNMLSGYIPK 650 (768)
T ss_dssp EEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSC-----SSSBCCCEEECCSSCCBSCCCG
T ss_pred cccccccccccccccccccccccccchhhhccccccccccccceecccCchhh-----hccccccEEECcCCcccccCCH
Confidence 0 000000 00000 0000000000000 00011122221 2345678999999999999999
Q ss_pred ccccCCCccEEeccccccccCCCCcccCc-cceEEEccCCcccccCCccccCCccCcEEEccccccCCcCCccccccccc
Q 001384 581 DIGKLQNFSMVHLGFNQFDGKLPSQFDQL-PLIVLNLTRNNFSGEIPSEFGNIKCLQNLDLSYNNFSGPFPASFNNLTEL 659 (1088)
Q Consensus 581 ~~~~l~~L~~L~l~~N~l~g~~p~~~~~l-~l~~l~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~l~~L 659 (1088)
.++++++|+.|+|++|+++|.+|+.++.+ .|++|+|++|+++|.||..++++++|+.|||++|+|+|.||.. +.+.++
T Consensus 651 ~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~ 729 (768)
T 3rgz_A 651 EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETF 729 (768)
T ss_dssp GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGS
T ss_pred HHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccC
Confidence 99999999999999999999999999999 6999999999999999999999999999999999999999975 567777
Q ss_pred ceeeccCCCCcccc
Q 001384 660 SKLNISYNPLVSGT 673 (1088)
Q Consensus 660 ~~l~l~~N~l~~g~ 673 (1088)
....+.+|+..||.
T Consensus 730 ~~~~~~gN~~Lcg~ 743 (768)
T 3rgz_A 730 PPAKFLNNPGLCGY 743 (768)
T ss_dssp CGGGGCSCTEEEST
T ss_pred CHHHhcCCchhcCC
Confidence 78888899876875
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=9e-57 Score=553.81 Aligned_cols=518 Identities=21% Similarity=0.308 Sum_probs=346.9
Q ss_pred CchhhHHHHHHHHhhcccCCCC----CcccccccCCCCCCccc---CCceeCCCCceeEEeccccccccccccccccCCc
Q 001384 31 SLETDREVLSNLRSFLENNNPV----NEGHYMQWNQSSSPCEW---PGIICSPDKARVNGLNLTDWNISGDIFNNFSALT 103 (1088)
Q Consensus 31 ~~~~d~~~l~~~~~~~~~~~~~----~~~~~~sW~~~~~~C~W---~gv~C~~~~~~v~~L~L~~~~l~~~~~~~l~~l~ 103 (1088)
....|++||.+++.++...+.. +....++|+.+++||.| +||+|+.. +||++|+|++++++|.+|+++++|+
T Consensus 27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~~L~ 105 (636)
T 4eco_A 27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQLT 105 (636)
T ss_dssp HHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGGGCT
T ss_pred hHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCChHHhcCc
Confidence 3457999999999998653322 11235589999999999 99999865 8999999999999999999999999
Q ss_pred cCCeeeCCCCCCC------C------CcCccCCCCCCCcEEECccccccCccc--CCC-CCCCceeecccccccccccCc
Q 001384 104 QLSYLDLSRNTFS------G------SIPDDLSSCRSLKYLNLSHNILSGDLN--LSG-LRSLEILDLSVNRIHGEISFS 168 (1088)
Q Consensus 104 ~L~~L~Ls~n~l~------~------~~p~~l~~l~~L~~L~Ls~n~l~~~~~--l~~-l~~L~~L~Ls~N~l~~~~~~~ 168 (1088)
+|++|||++|.+. | .+|... +.+|+ +++++|.+.+... +.. +..+..+++....+....
T Consensus 106 ~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--- 179 (636)
T 4eco_A 106 ELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSS--- 179 (636)
T ss_dssp TCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCC---
T ss_pred cceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCcccccccccc---
Confidence 9999999999772 2 223222 33344 4555544443221 110 112222222222111000
Q ss_pred hhhhcccceEEec--cCccCCCCCCccccCCCCCcEEEccCcccccc-ccccCcccceecccCccccccccccccc--CC
Q 001384 169 FPAICEKLVVANL--SLNNLTGRIDTCFDGCLNLRYLDLSSNNFRGN-IWNGLAQLVEFSVSENVLSGVVSSSVFK--EN 243 (1088)
Q Consensus 169 ~~~~~~~L~~L~L--~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~--~l 243 (1088)
...++.+.+ ..|++++ +|..|+++++|++|+|++|++++. +.... +.-+.+...+.++ ..+. .+
T Consensus 180 ----~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~-----~~~~~~~~~~~ip-~~l~~~~l 248 (636)
T 4eco_A 180 ----RITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAW-----ENENSEYAQQYKT-EDLKWDNL 248 (636)
T ss_dssp ----CCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSC-----SCTTSHHHHHHTT-SCCCGGGC
T ss_pred ----ccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccc-----cccccchhcccCc-hhhhhccc
Confidence 011122222 2578888 788899999999999999988873 11000 0000011111122 1223 55
Q ss_pred CccCEEEcCCCcccccCcccccCCCCCcEEEccCcc-ccC-CCccccCCC------CCCCEEeCCCCcCCccCcc--ccc
Q 001384 244 CSLEIFDLSENEFIGDFPGEVSNCRNLVVLNLFGNN-FSG-PIPAEIGSI------SGLEALFLGKNNFLSVIPE--SLL 313 (1088)
Q Consensus 244 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~-l~~-~~p~~~~~l------~~L~~L~L~~N~l~~~~p~--~l~ 313 (1088)
++|++|+|++|++.+.+|..++++++|++|+|++|+ ++| .+|..++.+ ++|++|+|++|+++ .+|. .++
T Consensus 249 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~ 327 (636)
T 4eco_A 249 KDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQ 327 (636)
T ss_dssp TTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHT
T ss_pred CCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhc
Confidence 566666666666666666666666666666666666 665 566666554 66666666666666 4565 666
Q ss_pred CCCCCcEEEcCCCcCCCchhHhhhcccccceeecCcCcccCCCCCccccCCCCcCEEEccCCccCCCCCccccCCcC-cc
Q 001384 314 NLSKLEVLDLSSNNFGGEVQKIFGRFTQVKILALHSNSYIDGMNSSGILKLPNISRLDLSHNNFTGPLPVEISQMRS-LK 392 (1088)
Q Consensus 314 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~-L~ 392 (1088)
++++|++|+|++|+++|.+| .| ..+++|++|+|++|+++ .+|..+..+++ |+
T Consensus 328 ~l~~L~~L~L~~N~l~g~ip-~~-------------------------~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~ 380 (636)
T 4eco_A 328 KMKKLGMLECLYNQLEGKLP-AF-------------------------GSEIKLASLNLAYNQIT-EIPANFCGFTEQVE 380 (636)
T ss_dssp TCTTCCEEECCSCCCEEECC-CC-------------------------EEEEEESEEECCSSEEE-ECCTTSEEECTTCC
T ss_pred cCCCCCEEeCcCCcCccchh-hh-------------------------CCCCCCCEEECCCCccc-cccHhhhhhcccCc
Confidence 66666666666666665554 44 44556677777777777 67777777777 77
Q ss_pred eeeccccccCCcCCcccCCCC--CCcEEEccCCcCCCCCCcccc-------CCCCCcEEEccccccccCCCcc-ccCCCC
Q 001384 393 FLILAHNRFNGSIPAVYGNMP--NLQTLDLSFNELTGPIPPSIG-------NLTSLLWLMLANNSLSGEIPGE-IGNCTS 462 (1088)
Q Consensus 393 ~L~L~~N~l~~~~p~~~~~l~--~L~~L~L~~N~l~~~~p~~~~-------~l~~L~~L~L~~N~l~~~~p~~-l~~l~~ 462 (1088)
+|++++|+++ .+|..+..++ +|++|++++|++++.+|..++ .+++|++|+|++|+++ .+|.. +..+++
T Consensus 381 ~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~ 458 (636)
T 4eco_A 381 NLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSP 458 (636)
T ss_dssp EEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCC
T ss_pred EEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCC
Confidence 7777777777 6777766654 777788888877777777777 6777888888888887 45544 445777
Q ss_pred CCeEEccCCcCccCCCchhhccCCCCCccccccccCCcccccCCccccccccccCCCCCCCcceeeehhccccchhhhhc
Q 001384 463 LLWLNLSNNKLSGNIPPEVMTIGRNARPTFEANQRNGERTIAGSSECLSMKRWIPADYPPFSFVYTILTRKSCRSLWDRL 542 (1088)
Q Consensus 463 L~~L~L~~N~l~g~ip~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 542 (1088)
|++|+|++|+++ .+|..++....- .
T Consensus 459 L~~L~Ls~N~l~-~i~~~~~~~~~~----------------------------------------------~-------- 483 (636)
T 4eco_A 459 LSSINLMGNMLT-EIPKNSLKDENE----------------------------------------------N-------- 483 (636)
T ss_dssp CSEEECCSSCCS-BCCSSSSEETTE----------------------------------------------E--------
T ss_pred CCEEECCCCCCC-CcCHHHhccccc----------------------------------------------c--------
Confidence 888888888877 677654321000 0
Q ss_pred ccCCcccccccCCCcccceeeeceEEccCCccccccCcccc--cCCCccEEeccccccccCCCCcccCc-cceEEEc---
Q 001384 543 LKGTGIFPVCLPGLASRTFQITGYLQLSGNQLSGELSPDIG--KLQNFSMVHLGFNQFDGKLPSQFDQL-PLIVLNL--- 616 (1088)
Q Consensus 543 ~~~~~~~~~~l~~~~~~~~~~l~~L~l~~N~l~g~~p~~~~--~l~~L~~L~l~~N~l~g~~p~~~~~l-~l~~l~l--- 616 (1088)
...+..+++|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..++.+ .|+.|+|
T Consensus 484 ---------------~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N 546 (636)
T 4eco_A 484 ---------------FKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQ 546 (636)
T ss_dssp ---------------CTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSC
T ss_pred ---------------ccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCC
Confidence 001123456788888887 6777776 77888888888888886 77777776 5778877
Q ss_pred ---cCCcccccCCccccCCccCcEEEccccccCCcCCcccccccccceeeccCCCCcc
Q 001384 617 ---TRNNFSGEIPSEFGNIKCLQNLDLSYNNFSGPFPASFNNLTELSKLNISYNPLVS 671 (1088)
Q Consensus 617 ---~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~l~~L~~l~l~~N~l~~ 671 (1088)
++|++.+.+|..|+++++|+.|+|++|+| +.+|..+. ++|+.|++++|++.+
T Consensus 547 ~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 547 RDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp BCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCE
T ss_pred cccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCcc
Confidence 67889999999999999999999999999 58999877 899999999999964
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.1e-54 Score=543.09 Aligned_cols=562 Identities=22% Similarity=0.204 Sum_probs=459.1
Q ss_pred ceeEEeccccccccccccccccCCccCCeeeCCCCCCCCCcCccCCCCCCCcEEECccccccCcc--cCCCCCCCceeec
Q 001384 79 ARVNGLNLTDWNISGDIFNNFSALTQLSYLDLSRNTFSGSIPDDLSSCRSLKYLNLSHNILSGDL--NLSGLRSLEILDL 156 (1088)
Q Consensus 79 ~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L 156 (1088)
.+++.|+|++++|++..+..|+++++|++|+|++|.+++..|..++++++|++|+|++|.+++.. .+.++++|++|+|
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 47899999999999988888999999999999999999999999999999999999999999755 4899999999999
Q ss_pred ccccccccccCchhhhcccceEEeccCccCCCCCCccccCCCCCcEEEccCccccccccc-----cCcccceecccCccc
Q 001384 157 SVNRIHGEISFSFPAICEKLVVANLSLNNLTGRIDTCFDGCLNLRYLDLSSNNFRGNIWN-----GLAQLVEFSVSENVL 231 (1088)
Q Consensus 157 s~N~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~-----~l~~L~~L~L~~n~l 231 (1088)
++|++++..+..+ ..+++|++|+|++|++++..+..+.++++|++|++++|++++..+. .+++|++|++++|.+
T Consensus 105 ~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l 183 (680)
T 1ziw_A 105 MSNSIQKIKNNPF-VKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183 (680)
T ss_dssp CSSCCCCCCSCTT-TTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred CCCccCccChhHc-cccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence 9999987666555 4568999999999999999999999999999999999999875432 357899999999999
Q ss_pred ccccccccccCCCccCEEEcCCCcccccCccccc---CCCCCcEEEccCccccCCCccccCCCCC--CCEEeCCCCcCCc
Q 001384 232 SGVVSSSVFKENCSLEIFDLSENEFIGDFPGEVS---NCRNLVVLNLFGNNFSGPIPAEIGSISG--LEALFLGKNNFLS 306 (1088)
Q Consensus 232 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~---~l~~L~~L~L~~N~l~~~~p~~~~~l~~--L~~L~L~~N~l~~ 306 (1088)
++. ++..|..+.+|+.|++++|.+.......+. ..++|+.|++++|.+++..|..+..++. |+.|+|++|++.+
T Consensus 184 ~~~-~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~ 262 (680)
T 1ziw_A 184 KEF-SPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV 262 (680)
T ss_dssp CCB-CTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCE
T ss_pred ccc-ChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCc
Confidence 864 456778888999999999887643322221 3578999999999999888888888754 9999999999999
Q ss_pred cCcccccCCCCCcEEEcCCCcCCCchhHhhhcccccceeecCcCcccC--------CCCCccccCCCCcCEEEccCCccC
Q 001384 307 VIPESLLNLSKLEVLDLSSNNFGGEVQKIFGRFTQVKILALHSNSYID--------GMNSSGILKLPNISRLDLSHNNFT 378 (1088)
Q Consensus 307 ~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~--------~~~~~~~~~l~~L~~L~Ls~N~l~ 378 (1088)
..|..|+.+++|++|+|++|.+.+..+..|+.+++|+.|++++|.... .+....+..+++|++|++++|.++
T Consensus 263 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~ 342 (680)
T 1ziw_A 263 VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIP 342 (680)
T ss_dssp ECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBC
T ss_pred cCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccC
Confidence 888899999999999999999999999999999999999998765322 112236678899999999999999
Q ss_pred CCCCccccCCcCcceeeccccccCCc-C-CcccCC--CCCCcEEEccCCcCCCCCCccccCCCCCcEEEccccccccCCC
Q 001384 379 GPLPVEISQMRSLKFLILAHNRFNGS-I-PAVYGN--MPNLQTLDLSFNELTGPIPPSIGNLTSLLWLMLANNSLSGEIP 454 (1088)
Q Consensus 379 ~~~p~~l~~l~~L~~L~L~~N~l~~~-~-p~~~~~--l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 454 (1088)
+..|..|.++++|++|++++|.+... + +..|.. .++|+.|++++|++++..|..+..+++|++|+|++|++++.+|
T Consensus 343 ~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 422 (680)
T 1ziw_A 343 GIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELT 422 (680)
T ss_dssp CCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECC
T ss_pred CCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccC
Confidence 88888899999999999999986532 2 222332 2589999999999998888899999999999999999987776
Q ss_pred -ccccCCCCCCeEEccCCcCccCCCchhhccCCCCCccccccccCCcccccCCccccccccccCCCCCCCcceeeehhcc
Q 001384 455 -GEIGNCTSLLWLNLSNNKLSGNIPPEVMTIGRNARPTFEANQRNGERTIAGSSECLSMKRWIPADYPPFSFVYTILTRK 533 (1088)
Q Consensus 455 -~~l~~l~~L~~L~L~~N~l~g~ip~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (1088)
..+.++++|++|++++|++++..|..+..+.++..+.+..|...+.
T Consensus 423 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~--------------------------------- 469 (680)
T 1ziw_A 423 GQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNV--------------------------------- 469 (680)
T ss_dssp SGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCT---------------------------------
T ss_pred cccccCcccccEEecCCCCcceeChhhhhcCcccccchhcccccccc---------------------------------
Confidence 6788999999999999999877777777777777766666543211
Q ss_pred ccchhhhhcccCCcccccccCCCcccceeeeceEEccCCccccccCcccccCCCccEEeccccccccCCC--------Cc
Q 001384 534 SCRSLWDRLLKGTGIFPVCLPGLASRTFQITGYLQLSGNQLSGELSPDIGKLQNFSMVHLGFNQFDGKLP--------SQ 605 (1088)
Q Consensus 534 ~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~l~~L~l~~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~p--------~~ 605 (1088)
+..|..+ ..+..+++|+|++|++++..|..++.+++|+.|+|++|++++..+ ..
T Consensus 470 -------------~~~p~~~-----~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~ 531 (680)
T 1ziw_A 470 -------------DSSPSPF-----QPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYF 531 (680)
T ss_dssp -------------TCSSCTT-----TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCT
T ss_pred -------------ccCCccc-----ccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchh
Confidence 0111111 122346789999999998777789999999999999999986422 23
Q ss_pred ccCc-cceEEEccCCcccccCCc-cccCCccCcEEEccccccCCcCCcccccccccceeeccCCCCccccCCCC-C-ccc
Q 001384 606 FDQL-PLIVLNLTRNNFSGEIPS-EFGNIKCLQNLDLSYNNFSGPFPASFNNLTELSKLNISYNPLVSGTIPST-G-QLA 681 (1088)
Q Consensus 606 ~~~l-~l~~l~l~~N~l~~~~p~-~~~~l~~L~~L~l~~N~l~g~~p~~~~~l~~L~~l~l~~N~l~~g~ip~~-~-~~~ 681 (1088)
++.+ .|++|+|++|+++ .+|. .|+++++|+.|||++|+|++..|..|.++++|+.|+|++|++ ++.+|.. + .+.
T Consensus 532 ~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~~~~ 609 (680)
T 1ziw_A 532 LKGLSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLI-TSVEKKVFGPAFR 609 (680)
T ss_dssp TTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCC-CBCCHHHHHHHHT
T ss_pred hcCCCCCCEEECCCCCCC-CCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcC-CccChhHhccccc
Confidence 5666 6899999999999 6664 689999999999999999966666678999999999999999 5554432 2 456
Q ss_pred ccccCccCCCCCCC
Q 001384 682 TFEKTSYLGDPLLD 695 (1088)
Q Consensus 682 ~~~~~~~~~n~~~~ 695 (1088)
++....+.+||..|
T Consensus 610 ~L~~l~l~~N~~~c 623 (680)
T 1ziw_A 610 NLTELDMRFNPFDC 623 (680)
T ss_dssp TCSEEECTTCCCCB
T ss_pred ccCEEEccCCCccc
Confidence 66777788998887
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=5.2e-53 Score=520.67 Aligned_cols=482 Identities=22% Similarity=0.245 Sum_probs=315.2
Q ss_pred eeEEeccccccccccccccccCCccCCeeeCCCCCCCCCcCccCCCCCCCcEEECccccccCc--ccCCCCCCCceeecc
Q 001384 80 RVNGLNLTDWNISGDIFNNFSALTQLSYLDLSRNTFSGSIPDDLSSCRSLKYLNLSHNILSGD--LNLSGLRSLEILDLS 157 (1088)
Q Consensus 80 ~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~--~~l~~l~~L~~L~Ls 157 (1088)
.++.|+|++|.|++..+..|+++++|++|+|++|.+++..|..|+++++|++|+|++|.+++. ..+.++++|++|+|+
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 113 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecc
Confidence 577888888888887778888888888888888888877788888888888888888888764 357888888888888
Q ss_pred cccccccccCchhhhcccceEEeccCccCCCCCCccccCCCCCcEEEccCccccccc---cccCcccc--eecccCcccc
Q 001384 158 VNRIHGEISFSFPAICEKLVVANLSLNNLTGRIDTCFDGCLNLRYLDLSSNNFRGNI---WNGLAQLV--EFSVSENVLS 232 (1088)
Q Consensus 158 ~N~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~--~L~L~~n~l~ 232 (1088)
+|++++..+..+ ..+++|++|+|++|++++.....+..+++|++|++++|++++.. +..+++|+ .|++++|.++
T Consensus 114 ~n~i~~l~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~ 192 (606)
T 3t6q_A 114 QTGISSIDFIPL-HNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192 (606)
T ss_dssp TSCCSCGGGSCC-TTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred ccCcccCCcchh-ccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccC
Confidence 888887655555 44578888888888888765445555888888888888887633 45667777 7788888887
Q ss_pred cccccccccCCCccCEEEcCCCcccccCcccccCCC-------------------------------CCcEEEccCcccc
Q 001384 233 GVVSSSVFKENCSLEIFDLSENEFIGDFPGEVSNCR-------------------------------NLVVLNLFGNNFS 281 (1088)
Q Consensus 233 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~-------------------------------~L~~L~L~~N~l~ 281 (1088)
+..+ ..|.. .+|+.|++++|.. ++..+..+. +|+.|++++|.++
T Consensus 193 ~~~~-~~~~~-~~L~~L~l~~~~~---~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~ 267 (606)
T 3t6q_A 193 GIEP-GAFDS-AVFQSLNFGGTQN---LLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF 267 (606)
T ss_dssp EECT-TTTTT-CEEEEEECTTCSC---HHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCS
T ss_pred ccCh-hHhhh-ccccccccCCchh---HHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccC
Confidence 6543 33433 4788888877751 111111111 4555555555555
Q ss_pred CCCccccCCCCCCCEEeCCCCcCCccCcccccCCCCCcEEEcCCCcCCCchhHhhhcccccceeecCcCcccCCCCCccc
Q 001384 282 GPIPAEIGSISGLEALFLGKNNFLSVIPESLLNLSKLEVLDLSSNNFGGEVQKIFGRFTQVKILALHSNSYIDGMNSSGI 361 (1088)
Q Consensus 282 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~ 361 (1088)
+..+..|+.+++|++|++++|+++ .+|..+.++++|++|++++|.+.+..+..++.+++|+.|++++|.+........+
T Consensus 268 ~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 346 (606)
T 3t6q_A 268 NISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCL 346 (606)
T ss_dssp SCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTT
T ss_pred ccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhh
Confidence 554555555555555555555555 3455555555555555555555555555555555555555555444333333344
Q ss_pred cCCCCcCEEEccCCccCCCC--CccccCCcCcceeeccccccCCcCCcccCCCCCCcEEEccCCcCCCCCCcc-ccCCCC
Q 001384 362 LKLPNISRLDLSHNNFTGPL--PVEISQMRSLKFLILAHNRFNGSIPAVYGNMPNLQTLDLSFNELTGPIPPS-IGNLTS 438 (1088)
Q Consensus 362 ~~l~~L~~L~Ls~N~l~~~~--p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-~~~l~~ 438 (1088)
..+++|++|++++|.+++.. |..+..+++|++|++++|++++..|..+..+++|++|++++|++++..|.. +.++++
T Consensus 347 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 426 (606)
T 3t6q_A 347 ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHL 426 (606)
T ss_dssp TTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTT
T ss_pred hccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCccc
Confidence 44444444444444444332 334444444444444444444444444444444444444444444333322 444444
Q ss_pred CcEEEccccccccCCCccccCCCCCCeEEccCCcCccCCCchhhccCCCCCccccccccCCcccccCCccccccccccCC
Q 001384 439 LLWLMLANNSLSGEIPGEIGNCTSLLWLNLSNNKLSGNIPPEVMTIGRNARPTFEANQRNGERTIAGSSECLSMKRWIPA 518 (1088)
Q Consensus 439 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~ 518 (1088)
|++|++++|.+++..|..++.+++|++|+
T Consensus 427 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~--------------------------------------------------- 455 (606)
T 3t6q_A 427 LKVLNLSHSLLDISSEQLFDGLPALQHLN--------------------------------------------------- 455 (606)
T ss_dssp CCEEECTTCCCBTTCTTTTTTCTTCCEEE---------------------------------------------------
T ss_pred CCEEECCCCccCCcCHHHHhCCCCCCEEE---------------------------------------------------
Confidence 44444444444444444444444444444
Q ss_pred CCCCCcceeeehhccccchhhhhcccCCcccccccCCCcccceeeeceEEccCCccccc---cCcccccCCCccEEeccc
Q 001384 519 DYPPFSFVYTILTRKSCRSLWDRLLKGTGIFPVCLPGLASRTFQITGYLQLSGNQLSGE---LSPDIGKLQNFSMVHLGF 595 (1088)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~l~~L~l~~N~l~g~---~p~~~~~l~~L~~L~l~~ 595 (1088)
+++|++++. .+..++.+++|+.|++++
T Consensus 456 --------------------------------------------------L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~ 485 (606)
T 3t6q_A 456 --------------------------------------------------LQGNHFPKGNIQKTNSLQTLGRLEILVLSF 485 (606)
T ss_dssp --------------------------------------------------CTTCBCGGGEECSSCGGGGCTTCCEEECTT
T ss_pred --------------------------------------------------CCCCCCCccccccchhhccCCCccEEECCC
Confidence 444444431 224567778888888888
Q ss_pred cccccCCCCcccCc-cceEEEccCCcccccCCccccCCccCcEEEccccccCCcCCcccccccccceeeccCCCCc
Q 001384 596 NQFDGKLPSQFDQL-PLIVLNLTRNNFSGEIPSEFGNIKCLQNLDLSYNNFSGPFPASFNNLTELSKLNISYNPLV 670 (1088)
Q Consensus 596 N~l~g~~p~~~~~l-~l~~l~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~l~~L~~l~l~~N~l~ 670 (1088)
|++++.+|..++.+ .|+.|+|++|++++..|..+.++++| .|+|++|++++.+|..+..+++|+.|++++|++.
T Consensus 486 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 560 (606)
T 3t6q_A 486 CDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLD 560 (606)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEE
T ss_pred CccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCcc
Confidence 88888888888877 68888888888888889999999999 9999999999888888999999999999999994
No 6
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.6e-52 Score=521.56 Aligned_cols=539 Identities=21% Similarity=0.206 Sum_probs=388.0
Q ss_pred ceeEEeccccccccccccccccCCccCCeeeCCCCCCCCCcCccCCCCCCCcEEECccccccCcc--cCCCCCCCceeec
Q 001384 79 ARVNGLNLTDWNISGDIFNNFSALTQLSYLDLSRNTFSGSIPDDLSSCRSLKYLNLSHNILSGDL--NLSGLRSLEILDL 156 (1088)
Q Consensus 79 ~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L 156 (1088)
.+++.|+|+++.+++..+..++++++|++|+|++|.+++..+..|+++++|++|+|++|.+++.. .+.++++|++|+|
T Consensus 49 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 128 (680)
T 1ziw_A 49 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDL 128 (680)
T ss_dssp TTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEEC
T ss_pred CcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEEC
Confidence 46778999999999988888999999999999999999665567999999999999999998754 5889999999999
Q ss_pred ccccccccccCchhhhcccceEEeccCccCCCCCCcccc--CCCCCcEEEccCcccccccc---ccCcccceecccCccc
Q 001384 157 SVNRIHGEISFSFPAICEKLVVANLSLNNLTGRIDTCFD--GCLNLRYLDLSSNNFRGNIW---NGLAQLVEFSVSENVL 231 (1088)
Q Consensus 157 s~N~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~Ls~N~l~~~~~---~~l~~L~~L~L~~n~l 231 (1088)
++|.+++..+..+ ..+++|++|++++|++++..+..+. .+++|++|++++|++++..+ ..+.+|+.|+++++.+
T Consensus 129 s~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l 207 (680)
T 1ziw_A 129 SHNGLSSTKLGTQ-VQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQL 207 (680)
T ss_dssp CSSCCSCCCCCSS-SCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCC
T ss_pred CCCcccccCchhh-cccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhcccccc
Confidence 9999988776665 3468899999999999988877654 56889999999998876443 4566677777777666
Q ss_pred ccccccccc--cCCCccCEEEcCCCcccccCcccccCCCC--CcEEEccCccccCCCccccCCCCCCCEEeCCCCcCCcc
Q 001384 232 SGVVSSSVF--KENCSLEIFDLSENEFIGDFPGEVSNCRN--LVVLNLFGNNFSGPIPAEIGSISGLEALFLGKNNFLSV 307 (1088)
Q Consensus 232 ~~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~--L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 307 (1088)
.+....... -..++|+.|++++|.+++..|..+.+++. |++|+|++|++++..|..|+.+++|++|+|++|++.+.
T Consensus 208 ~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 287 (680)
T 1ziw_A 208 GPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHL 287 (680)
T ss_dssp HHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEE
T ss_pred ChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCcc
Confidence 533221111 02356777777777777666666666644 77777777777766666677777777777777777776
Q ss_pred CcccccCCCCCcEEEcCCCcCCCc-----hh----HhhhcccccceeecCcCcccCCCCCccccCCCCcCEEEccCCccC
Q 001384 308 IPESLLNLSKLEVLDLSSNNFGGE-----VQ----KIFGRFTQVKILALHSNSYIDGMNSSGILKLPNISRLDLSHNNFT 378 (1088)
Q Consensus 308 ~p~~l~~l~~L~~L~L~~N~l~~~-----~~----~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 378 (1088)
.|..+.++++|++|++++|...+. +| ..|+.+++|+.|++++|.+. ...+..|..+++|++|++++|.++
T Consensus 288 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~~~ 366 (680)
T 1ziw_A 288 FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIP-GIKSNMFTGLINLKYLSLSNSFTS 366 (680)
T ss_dssp CTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBC-CCCTTTTTTCTTCCEEECTTCBSC
T ss_pred ChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccC-CCChhHhccccCCcEEECCCCchh
Confidence 666777777777777776654431 11 25666777777777777643 344555666777777777777643
Q ss_pred CCC--CccccC--CcCcceeeccccccCCcCCcccCCCCCCcEEEccCCcCCCCCC-ccccCCCCCcEEEccccccccCC
Q 001384 379 GPL--PVEISQ--MRSLKFLILAHNRFNGSIPAVYGNMPNLQTLDLSFNELTGPIP-PSIGNLTSLLWLMLANNSLSGEI 453 (1088)
Q Consensus 379 ~~~--p~~l~~--l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~ 453 (1088)
+.. +..+.. .++|+.|++++|++++..|..+..+++|+.|++++|++++.+| ..+.++++|++|++++|++++..
T Consensus 367 ~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 446 (680)
T 1ziw_A 367 LRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLT 446 (680)
T ss_dssp CCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECC
T ss_pred hhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeC
Confidence 221 112222 2467777777777776666677777777777777777765554 45666777777777777776666
Q ss_pred CccccCCCCCCeEEccCCcCc--cCCCchhhccCCCCCccccccccCCcccccCCccccccccccCCCCCCCcceeeehh
Q 001384 454 PGEIGNCTSLLWLNLSNNKLS--GNIPPEVMTIGRNARPTFEANQRNGERTIAGSSECLSMKRWIPADYPPFSFVYTILT 531 (1088)
Q Consensus 454 p~~l~~l~~L~~L~L~~N~l~--g~ip~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (1088)
+..+..+++|+.|++++|.++ +.+|..+..+.++..+.+..|...+..
T Consensus 447 ~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~------------------------------ 496 (680)
T 1ziw_A 447 RNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIN------------------------------ 496 (680)
T ss_dssp TTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCC------------------------------
T ss_pred hhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCC------------------------------
Confidence 666777777777777777765 456666666666666666555433210
Q ss_pred ccccchhhhhcccCCcccccccCCCcccceeeeceEEccCCccccccC--------cccccCCCccEEeccccccccCCC
Q 001384 532 RKSCRSLWDRLLKGTGIFPVCLPGLASRTFQITGYLQLSGNQLSGELS--------PDIGKLQNFSMVHLGFNQFDGKLP 603 (1088)
Q Consensus 532 ~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~l~~L~l~~N~l~g~~p--------~~~~~l~~L~~L~l~~N~l~g~~p 603 (1088)
......+..+++|+|++|++++..+ ..++.+++|+.|+|++|+++...+
T Consensus 497 -----------------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~ 553 (680)
T 1ziw_A 497 -----------------------DDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPV 553 (680)
T ss_dssp -----------------------TTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCT
T ss_pred -----------------------hhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCH
Confidence 0000112345789999999986422 237889999999999999994444
Q ss_pred CcccCc-cceEEEccCCcccccCCccccCCccCcEEEccccccCCcCCcccc-cccccceeeccCCCCccc
Q 001384 604 SQFDQL-PLIVLNLTRNNFSGEIPSEFGNIKCLQNLDLSYNNFSGPFPASFN-NLTELSKLNISYNPLVSG 672 (1088)
Q Consensus 604 ~~~~~l-~l~~l~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~-~l~~L~~l~l~~N~l~~g 672 (1088)
..|+.+ .|+.|+|++|++++..|..|.++++|+.|+|++|+|++..|..+. .+++|+.|++++|+|.+.
T Consensus 554 ~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~ 624 (680)
T 1ziw_A 554 EVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCT 624 (680)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBC
T ss_pred HHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccC
Confidence 568887 799999999999966666789999999999999999987777787 799999999999999553
No 7
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=8.6e-53 Score=525.37 Aligned_cols=412 Identities=18% Similarity=0.186 Sum_probs=241.8
Q ss_pred CCCchhhHHHHHHHHhhcccCCCCCcccccccCCCC-----CC--ccc------------CCceeCCCCceeEEeccccc
Q 001384 29 GDSLETDREVLSNLRSFLENNNPVNEGHYMQWNQSS-----SP--CEW------------PGIICSPDKARVNGLNLTDW 89 (1088)
Q Consensus 29 ~~~~~~d~~~l~~~~~~~~~~~~~~~~~~~sW~~~~-----~~--C~W------------~gv~C~~~~~~v~~L~L~~~ 89 (1088)
++...+|++||++||+++.+. +|+.+. +| |.| +||+|+. .+||+.|+|+++
T Consensus 264 ~~~~~~d~~ALl~~k~~l~~~---------~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~ 333 (876)
T 4ecn_A 264 TAEYIKDYKALKAIWEALDGK---------NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGF 333 (876)
T ss_dssp CCHHHHHHHHHHHHHHHTTGG---------GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTT
T ss_pred cccchHHHHHHHHHHHHcCCC---------CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccC
Confidence 334567999999999999531 687554 56 999 9999986 689999999999
Q ss_pred cccccccccccCCccCCeeeC-CCCCCCCCcCccCCCC-CCCcE-----EEC----------cccccc------------
Q 001384 90 NISGDIFNNFSALTQLSYLDL-SRNTFSGSIPDDLSSC-RSLKY-----LNL----------SHNILS------------ 140 (1088)
Q Consensus 90 ~l~~~~~~~l~~l~~L~~L~L-s~n~l~~~~p~~l~~l-~~L~~-----L~L----------s~n~l~------------ 140 (1088)
+++|.+|+++++|++|++||| ++|.++|..|...... ..+.. +.. ....++
T Consensus 334 ~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~ 413 (876)
T 4ecn_A 334 GAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPE 413 (876)
T ss_dssp CCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTT
T ss_pred CCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcc
Confidence 999999999999999999999 8998887754321111 00000 000 000000
Q ss_pred -CcccCCCCCCCceeeccc--ccccccccCchhhhcccceEEeccCccCCC-----------------CCCcccc--CCC
Q 001384 141 -GDLNLSGLRSLEILDLSV--NRIHGEISFSFPAICEKLVVANLSLNNLTG-----------------RIDTCFD--GCL 198 (1088)
Q Consensus 141 -~~~~l~~l~~L~~L~Ls~--N~l~~~~~~~~~~~~~~L~~L~L~~n~l~~-----------------~~~~~l~--~l~ 198 (1088)
..........++.+.++. |++++ +|..+. .+++|++|+|++|++++ .+|..++ +++
T Consensus 414 ~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~-~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~ 491 (876)
T 4ecn_A 414 MKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQ-RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLK 491 (876)
T ss_dssp SCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGG-GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCT
T ss_pred ccccccccccchhhceeccccCcccc-hhHHHh-cCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCC
Confidence 000011222333333333 55555 554433 24566666666666665 2555555 666
Q ss_pred CCcEEEccCccccccccccCcccceecccCcccccccccccccCCCccCEEEcCCCc-ccc-cCcccccCCC-------C
Q 001384 199 NLRYLDLSSNNFRGNIWNGLAQLVEFSVSENVLSGVVSSSVFKENCSLEIFDLSENE-FIG-DFPGEVSNCR-------N 269 (1088)
Q Consensus 199 ~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~-~~p~~l~~l~-------~ 269 (1088)
+|++|+|++|++.+.+|.. |..+++|++|+|++|+ +++ .+|..+++++ +
T Consensus 492 ~L~~L~Ls~N~l~~~iP~~----------------------l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~ 549 (876)
T 4ecn_A 492 DLTDVELYNCPNMTQLPDF----------------------LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPK 549 (876)
T ss_dssp TCCEEEEESCTTCCSCCGG----------------------GGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTT
T ss_pred CCCEEECcCCCCCccChHH----------------------HhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCC
Confidence 6777777666665544322 2222344444444443 333 3333332222 4
Q ss_pred CcEEEccCccccCCCcc--ccCCCCCCCEEeCCCCcCCccCcccccCCCCCcEEEcCCCcCCCchhHhhhcccc-cceee
Q 001384 270 LVVLNLFGNNFSGPIPA--EIGSISGLEALFLGKNNFLSVIPESLLNLSKLEVLDLSSNNFGGEVQKIFGRFTQ-VKILA 346 (1088)
Q Consensus 270 L~~L~L~~N~l~~~~p~--~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~ 346 (1088)
|++|+|++|+++ .+|. .++.+++|+.|+|++|+++ .+| .|+++++|+.|+|++|+++ .+|..+..+++ |+.|+
T Consensus 550 L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~ 625 (876)
T 4ecn_A 550 IQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLG 625 (876)
T ss_dssp CCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEE
T ss_pred ccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEE
Confidence 444444444444 4444 4444444444444444444 333 4444444444444444444 33333444444 44444
Q ss_pred cCcCcccCCCCCccccCC--CCcCEEEccCCccCCCCCcc---cc--CCcCcceeeccccccCCcCCccc-CCCCCCcEE
Q 001384 347 LHSNSYIDGMNSSGILKL--PNISRLDLSHNNFTGPLPVE---IS--QMRSLKFLILAHNRFNGSIPAVY-GNMPNLQTL 418 (1088)
Q Consensus 347 L~~n~~~~~~~~~~~~~l--~~L~~L~Ls~N~l~~~~p~~---l~--~l~~L~~L~L~~N~l~~~~p~~~-~~l~~L~~L 418 (1088)
+++|.+. .+ +..+..+ ++|+.|+|++|++++.+|.. +. .+++|+.|+|++|+++ .+|..+ ..+++|+.|
T Consensus 626 Ls~N~L~-~l-p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L 702 (876)
T 4ecn_A 626 FSHNKLK-YI-PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTI 702 (876)
T ss_dssp CCSSCCC-SC-CSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEE
T ss_pred CcCCCCC-cC-chhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEE
Confidence 4444433 11 2233333 34788888888887765532 22 3347888888888888 556554 477888888
Q ss_pred EccCCcCCCCCCccccCC--------CCCcEEEccccccccCCCcccc--CCCCCCeEEccCCcCccCCCchhhcc
Q 001384 419 DLSFNELTGPIPPSIGNL--------TSLLWLMLANNSLSGEIPGEIG--NCTSLLWLNLSNNKLSGNIPPEVMTI 484 (1088)
Q Consensus 419 ~L~~N~l~~~~p~~~~~l--------~~L~~L~L~~N~l~~~~p~~l~--~l~~L~~L~L~~N~l~g~ip~~~~~~ 484 (1088)
+|++|+++ .+|..+... ++|++|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..+..+
T Consensus 703 ~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L 775 (876)
T 4ecn_A 703 ILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNS 775 (876)
T ss_dssp ECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGC
T ss_pred ECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcC
Confidence 88888888 666655432 37888888888888 6787776 88888888888888875 66655433
No 8
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.8e-51 Score=523.92 Aligned_cols=511 Identities=23% Similarity=0.234 Sum_probs=423.3
Q ss_pred cccCCceeCCCCceeEEeccccccccccccccccCCccCCeeeCCCCCCCCCc-CccCCCCCCCcEEECccccccCc--c
Q 001384 67 CEWPGIICSPDKARVNGLNLTDWNISGDIFNNFSALTQLSYLDLSRNTFSGSI-PDDLSSCRSLKYLNLSHNILSGD--L 143 (1088)
Q Consensus 67 C~W~gv~C~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~--~ 143 (1088)
|.|..|.+ ...+++.|+|++|.|++..+..|+++++|++|||++|.+.+.+ |.+|+++++|++|+|++|.+++. .
T Consensus 14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~ 91 (844)
T 3j0a_A 14 CNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD 91 (844)
T ss_dssp CCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred CCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence 56888887 3568899999999999998999999999999999999777777 78999999999999999999875 4
Q ss_pred cCCCCCCCceeecccccccccccCc-hhhhcccceEEeccCccCCCCCC-ccccCCCCCcEEEccCcccccccccc---C
Q 001384 144 NLSGLRSLEILDLSVNRIHGEISFS-FPAICEKLVVANLSLNNLTGRID-TCFDGCLNLRYLDLSSNNFRGNIWNG---L 218 (1088)
Q Consensus 144 ~l~~l~~L~~L~Ls~N~l~~~~~~~-~~~~~~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~---l 218 (1088)
.+.++++|++|+|++|.+++.++.. +...+++|++|+|++|++++..+ ..|+++++|++|+|++|.+++..+.. +
T Consensus 92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l 171 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL 171 (844)
T ss_dssp SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHH
T ss_pred HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccc
Confidence 6999999999999999999866543 44567999999999999998765 67999999999999999998755443 3
Q ss_pred --cccceecccCcccccccccccccCCC------ccCEEEcCCCcccccCcccccCC---CCCcEEEccC---------c
Q 001384 219 --AQLVEFSVSENVLSGVVSSSVFKENC------SLEIFDLSENEFIGDFPGEVSNC---RNLVVLNLFG---------N 278 (1088)
Q Consensus 219 --~~L~~L~L~~n~l~~~~~~~~~~~l~------~L~~L~Ls~n~l~~~~p~~l~~l---~~L~~L~L~~---------N 278 (1088)
++|+.|++++|.+++..+.. +..+. +|+.|++++|++++..|..+... ++++.|.++. +
T Consensus 172 ~~~~L~~L~L~~n~l~~~~~~~-~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~ 250 (844)
T 3j0a_A 172 QGKTLSFFSLAANSLYSRVSVD-WGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFH 250 (844)
T ss_dssp HHCSSCCCEECCSBSCCCCCCC-CCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCS
T ss_pred cCCccceEECCCCccccccccc-hhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccccccc
Confidence 78999999999998765543 22222 59999999999988888776543 6788888873 3
Q ss_pred cccCCCccccCCC--CCCCEEeCCCCcCCccCcccccCCCCCcEEEcCCCcCCCchhHhhhcccccceeecCcCcccCCC
Q 001384 279 NFSGPIPAEIGSI--SGLEALFLGKNNFLSVIPESLLNLSKLEVLDLSSNNFGGEVQKIFGRFTQVKILALHSNSYIDGM 356 (1088)
Q Consensus 279 ~l~~~~p~~~~~l--~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~ 356 (1088)
.+.+..+..|..+ ++|+.|+|++|.+.+..|..|..+++|+.|+|++|++++..+..|..+++|+.|++++|.+ ...
T Consensus 251 ~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l-~~~ 329 (844)
T 3j0a_A 251 NIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL-GEL 329 (844)
T ss_dssp SSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCC-SCC
T ss_pred ccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCC-Ccc
Confidence 3444444555554 6899999999999998899999999999999999999999999999999999999999985 455
Q ss_pred CCccccCCCCcCEEEccCCccCCCCCccccCCcCcceeeccccccCCcCCcccCCCCCCcEEEccCCcCCCCCCccccCC
Q 001384 357 NSSGILKLPNISRLDLSHNNFTGPLPVEISQMRSLKFLILAHNRFNGSIPAVYGNMPNLQTLDLSFNELTGPIPPSIGNL 436 (1088)
Q Consensus 357 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l 436 (1088)
.+..+..+++|+.|+|++|.+++..+..|..+++|+.|+|++|.+++ ++. +++|+.|++++|+++ .+|.. .
T Consensus 330 ~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~~----~~~L~~L~l~~N~l~-~l~~~---~ 400 (844)
T 3j0a_A 330 YSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-IHF----IPSIPDIFLSGNKLV-TLPKI---N 400 (844)
T ss_dssp CSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-CSS----CCSCSEEEEESCCCC-CCCCC---C
T ss_pred CHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc-ccC----CCCcchhccCCCCcc-ccccc---c
Confidence 66778889999999999999998777889999999999999999983 433 788999999999998 67654 4
Q ss_pred CCCcEEEccccccccCC-CccccCCCCCCeEEccCCcCccCCCchhhccCCCCCccccccccCCcccccCCccccccccc
Q 001384 437 TSLLWLMLANNSLSGEI-PGEIGNCTSLLWLNLSNNKLSGNIPPEVMTIGRNARPTFEANQRNGERTIAGSSECLSMKRW 515 (1088)
Q Consensus 437 ~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~L~~N~l~g~ip~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~ 515 (1088)
.+++.|++++|++++.. +..++++++|++|+|++|++++..+....
T Consensus 401 ~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--------------------------------- 447 (844)
T 3j0a_A 401 LTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTP--------------------------------- 447 (844)
T ss_dssp TTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSS---------------------------------
T ss_pred cccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccccc---------------------------------
Confidence 67899999999998532 23466899999999999999853222110
Q ss_pred cCCCCCCCcceeeehhccccchhhhhcccCCcccccccCCCcccceeeeceEEccCCccc-----cccCcccccCCCccE
Q 001384 516 IPADYPPFSFVYTILTRKSCRSLWDRLLKGTGIFPVCLPGLASRTFQITGYLQLSGNQLS-----GELSPDIGKLQNFSM 590 (1088)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~l~~L~l~~N~l~-----g~~p~~~~~l~~L~~ 590 (1088)
.....+++|+|++|.++ +..|..+..+++|+.
T Consensus 448 -------------------------------------------~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~ 484 (844)
T 3j0a_A 448 -------------------------------------------SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQV 484 (844)
T ss_dssp -------------------------------------------CSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEEC
T ss_pred -------------------------------------------ccCCccccccCCCCccccccccccchhhhcCcccccE
Confidence 00123467899999997 455677889999999
Q ss_pred EeccccccccCCCCcccCc-cceEEEccCCcccccCCccccCCccCcEEEccccccCCcCCcccccccccceeeccCCCC
Q 001384 591 VHLGFNQFDGKLPSQFDQL-PLIVLNLTRNNFSGEIPSEFGNIKCLQNLDLSYNNFSGPFPASFNNLTELSKLNISYNPL 669 (1088)
Q Consensus 591 L~l~~N~l~g~~p~~~~~l-~l~~l~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~l~~L~~l~l~~N~l 669 (1088)
|+|++|+|++.+|..++.+ .|+.|+|++|++++..|..+. ++|+.|||++|+|+|.+|..+. +|+.|++++|++
T Consensus 485 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~ 559 (844)
T 3j0a_A 485 LYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKF 559 (844)
T ss_dssp CCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECC
T ss_pred EECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhC---CcCEEEecCCCc
Confidence 9999999999999999888 799999999999976666666 8999999999999999998764 788999999999
Q ss_pred cc
Q 001384 670 VS 671 (1088)
Q Consensus 670 ~~ 671 (1088)
.|
T Consensus 560 ~C 561 (844)
T 3j0a_A 560 IC 561 (844)
T ss_dssp CC
T ss_pred cc
Confidence 55
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.4e-51 Score=507.82 Aligned_cols=520 Identities=19% Similarity=0.198 Sum_probs=399.8
Q ss_pred ccccccccccccccCCccCCeeeCCCCCCCCCcCccCCCCCCCcEEECccccccCcc--cCCCCCCCceeeccccccccc
Q 001384 87 TDWNISGDIFNNFSALTQLSYLDLSRNTFSGSIPDDLSSCRSLKYLNLSHNILSGDL--NLSGLRSLEILDLSVNRIHGE 164 (1088)
Q Consensus 87 ~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~N~l~~~ 164 (1088)
++.+++. +|..+. ..+++|||++|.|++..|..|+++++|++|+|++|.+++.. .+.++++|++|+|++|++++.
T Consensus 20 ~~~~l~~-iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 96 (606)
T 3t6q_A 20 ENLGLNE-IPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFM 96 (606)
T ss_dssp TTSCCSS-CCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEE
T ss_pred CCCCccc-CcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCccccc
Confidence 3334442 344443 36899999999999888999999999999999999998753 589999999999999999987
Q ss_pred ccCchhhhcccceEEeccCccCCCCCCccccCCCCCcEEEccCcccccc---ccccCcccceecccCccccccccccccc
Q 001384 165 ISFSFPAICEKLVVANLSLNNLTGRIDTCFDGCLNLRYLDLSSNNFRGN---IWNGLAQLVEFSVSENVLSGVVSSSVFK 241 (1088)
Q Consensus 165 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~---~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 241 (1088)
.|..+. .+++|++|+|++|++++..+..+.++++|++|++++|++++. .+..+++|++|++++|.+++. .+..|.
T Consensus 97 ~~~~~~-~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~ 174 (606)
T 3t6q_A 97 AETALS-GPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYL-SKEDMS 174 (606)
T ss_dssp CTTTTS-SCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEE-CHHHHH
T ss_pred Chhhhc-ccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCccccc-Chhhhh
Confidence 776664 468999999999999998888899999999999999998762 223366777777777777643 344566
Q ss_pred CCCccC--EEEcCCCcccccCcccccCCCCCcEEEccCccccCCCccccCCCCCCCEEeCCCCcCC-----ccCcccccC
Q 001384 242 ENCSLE--IFDLSENEFIGDFPGEVSNCRNLVVLNLFGNNFSGPIPAEIGSISGLEALFLGKNNFL-----SVIPESLLN 314 (1088)
Q Consensus 242 ~l~~L~--~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~-----~~~p~~l~~ 314 (1088)
.+++|+ .|++++|.+++..|..+.. .+|++|++++|. .++..+..+.++....+..+.+. ...+..+..
T Consensus 175 ~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~ 250 (606)
T 3t6q_A 175 SLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEG 250 (606)
T ss_dssp TTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGG
T ss_pred hhcccceeEEecCCCccCccChhHhhh-ccccccccCCch---hHHHHhhhccccchhheechhhccccccccChhHhch
Confidence 666666 6777777777666555443 567777777765 22333444444333222222111 112223333
Q ss_pred CC--CCcEEEcCCCcCCCchhHhhhcccccceeecCcCcccCCCCCccccCCCCcCEEEccCCccCCCCCccccCCcCcc
Q 001384 315 LS--KLEVLDLSSNNFGGEVQKIFGRFTQVKILALHSNSYIDGMNSSGILKLPNISRLDLSHNNFTGPLPVEISQMRSLK 392 (1088)
Q Consensus 315 l~--~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 392 (1088)
+. +|+.|++++|.+++..+..|+.+++|+.|++++|.+. ..+..+..+++|++|++++|.+++..|..+..+++|+
T Consensus 251 l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 328 (606)
T 3t6q_A 251 LCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS--ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLT 328 (606)
T ss_dssp GGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS--CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCS
T ss_pred hhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC--CCChhhcccccCCEEECccCCcCcCchhhhhccCcCC
Confidence 32 6888888888888888888888888888888888754 2344567788888888888888877777888888888
Q ss_pred eeeccccccCCcCCc-ccCCCCCCcEEEccCCcCCCCC--CccccCCCCCcEEEccccccccCCCccccCCCCCCeEEcc
Q 001384 393 FLILAHNRFNGSIPA-VYGNMPNLQTLDLSFNELTGPI--PPSIGNLTSLLWLMLANNSLSGEIPGEIGNCTSLLWLNLS 469 (1088)
Q Consensus 393 ~L~L~~N~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~--p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~ 469 (1088)
+|++++|.+.+.+|. .+..+++|++|++++|++++.. |..++++++|++|++++|++++..|..++++++|++|+++
T Consensus 329 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 408 (606)
T 3t6q_A 329 HLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLA 408 (606)
T ss_dssp EEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECT
T ss_pred EEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECC
Confidence 888888888766654 4788888888888888888654 6778888888888888888887778888888888888888
Q ss_pred CCcCccCCCchhhccCCCCCccccccccCCcccccCCccccccccccCCCCCCCcceeeehhccccchhhhhcccCCccc
Q 001384 470 NNKLSGNIPPEVMTIGRNARPTFEANQRNGERTIAGSSECLSMKRWIPADYPPFSFVYTILTRKSCRSLWDRLLKGTGIF 549 (1088)
Q Consensus 470 ~N~l~g~ip~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 549 (1088)
+|++++..|....
T Consensus 409 ~n~l~~~~~~~~~------------------------------------------------------------------- 421 (606)
T 3t6q_A 409 FTRLKVKDAQSPF------------------------------------------------------------------- 421 (606)
T ss_dssp TCCEECCTTCCTT-------------------------------------------------------------------
T ss_pred CCcCCCcccchhh-------------------------------------------------------------------
Confidence 8888765543210
Q ss_pred ccccCCCcccceeeeceEEccCCccccccCcccccCCCccEEeccccccccC---CCCcccCc-cceEEEccCCcccccC
Q 001384 550 PVCLPGLASRTFQITGYLQLSGNQLSGELSPDIGKLQNFSMVHLGFNQFDGK---LPSQFDQL-PLIVLNLTRNNFSGEI 625 (1088)
Q Consensus 550 ~~~l~~~~~~~~~~l~~L~l~~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~---~p~~~~~l-~l~~l~l~~N~l~~~~ 625 (1088)
..+..+++|++++|++++..|..++.+++|++|++++|++++. .+..++.+ .|++|+|++|++++..
T Consensus 422 ---------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 492 (606)
T 3t6q_A 422 ---------QNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSID 492 (606)
T ss_dssp ---------TTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEEC
T ss_pred ---------hCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccC
Confidence 0112356899999999999999999999999999999999873 33567777 6999999999999999
Q ss_pred CccccCCccCcEEEccccccCCcCCcccccccccceeeccCCCCccccCCCC-CcccccccCccCCCCCCC
Q 001384 626 PSEFGNIKCLQNLDLSYNNFSGPFPASFNNLTELSKLNISYNPLVSGTIPST-GQLATFEKTSYLGDPLLD 695 (1088)
Q Consensus 626 p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~l~~L~~l~l~~N~l~~g~ip~~-~~~~~~~~~~~~~n~~~~ 695 (1088)
|..|+++++|+.|+|++|++++.+|+.+.++++| .|++++|++ ++.+|.. +.+..+....+.+||..|
T Consensus 493 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l-~~~~~~~~~~l~~L~~L~l~~N~~~c 561 (606)
T 3t6q_A 493 QHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHI-SIILPSLLPILSQQRTINLRQNPLDC 561 (606)
T ss_dssp TTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCC-CCCCGGGHHHHHTSSEEECTTCCEEC
T ss_pred hhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcc-cccCHhhcccCCCCCEEeCCCCCccc
Confidence 9999999999999999999999999999999999 999999999 5666653 556677778889999887
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.7e-51 Score=507.09 Aligned_cols=502 Identities=21% Similarity=0.223 Sum_probs=424.6
Q ss_pred ceeEEeccccccccccccccccCCccCCeeeCCCCCCCCCcCccCCCCCCCcEEECccccccCc--ccCCCCCCCceeec
Q 001384 79 ARVNGLNLTDWNISGDIFNNFSALTQLSYLDLSRNTFSGSIPDDLSSCRSLKYLNLSHNILSGD--LNLSGLRSLEILDL 156 (1088)
Q Consensus 79 ~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~--~~l~~l~~L~~L~L 156 (1088)
.+++.|+|+++.+++..+..|+++++|++|+|++|.+++..|..|+++++|++|+|++|.+++. ..+.++++|++|+|
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 4688999999999998888999999999999999999988888999999999999999999875 35889999999999
Q ss_pred ccccccccccCchhhhcccceEEeccCccCCC-CCCccccCCCCCcEEEccCccccccccccC---ccc----ceecccC
Q 001384 157 SVNRIHGEISFSFPAICEKLVVANLSLNNLTG-RIDTCFDGCLNLRYLDLSSNNFRGNIWNGL---AQL----VEFSVSE 228 (1088)
Q Consensus 157 s~N~l~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l---~~L----~~L~L~~ 228 (1088)
++|++++..+..+ ..+.+|++|+|++|++++ .+|..|+++++|++|++++|++++..+..+ .+| ..|++++
T Consensus 112 ~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~ 190 (606)
T 3vq2_A 112 VETKLASLESFPI-GQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL 190 (606)
T ss_dssp TTSCCCCSSSSCC-TTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTT
T ss_pred cCCcccccccccc-CCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccC
Confidence 9999987766665 456899999999999987 568899999999999999999987554433 333 3789999
Q ss_pred cccccccccccccCCCccCEEEcCCCccc-ccCcccccCCCCCcEEEccCccccC------CCccccCCCC--CCCEEeC
Q 001384 229 NVLSGVVSSSVFKENCSLEIFDLSENEFI-GDFPGEVSNCRNLVVLNLFGNNFSG------PIPAEIGSIS--GLEALFL 299 (1088)
Q Consensus 229 n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~L~~N~l~~------~~p~~~~~l~--~L~~L~L 299 (1088)
|.+++ ++...|... +|++|++++|.++ +.+|..+.++++|+.+++..+.+.+ ..+..+..+. .++.+++
T Consensus 191 n~l~~-~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l 268 (606)
T 3vq2_A 191 NPIDF-IQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRL 268 (606)
T ss_dssp CCCCE-ECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEE
T ss_pred CCcce-eCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheec
Confidence 99885 455556555 8999999999886 5677888899999998887655442 1122222322 3566777
Q ss_pred -CCCcCCccCcccccCCCCCcEEEcCCCcCCCchhHhhhcccccceeecCcCcccCCCCCccccCCCCcCEEEccCCccC
Q 001384 300 -GKNNFLSVIPESLLNLSKLEVLDLSSNNFGGEVQKIFGRFTQVKILALHSNSYIDGMNSSGILKLPNISRLDLSHNNFT 378 (1088)
Q Consensus 300 -~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 378 (1088)
..|.+.+.+|. +..+++|+.|++++|.+.... .+..+++|+.|++++|.+ ..++ .+ .+++|++|++++|+..
T Consensus 269 ~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l~--~l~~~~~L~~L~l~~n~l-~~lp--~~-~l~~L~~L~l~~n~~~ 341 (606)
T 3vq2_A 269 TYTNDFSDDIVK-FHCLANVSAMSLAGVSIKYLE--DVPKHFKWQSLSIIRCQL-KQFP--TL-DLPFLKSLTLTMNKGS 341 (606)
T ss_dssp CCCTTCCGGGGS-CGGGTTCSEEEEESCCCCCCC--CCCTTCCCSEEEEESCCC-SSCC--CC-CCSSCCEEEEESCSSC
T ss_pred cccccccccccc-cccCCCCCEEEecCccchhhh--hccccccCCEEEcccccC-cccc--cC-CCCccceeeccCCcCc
Confidence 77888888877 899999999999999997654 788899999999999997 4444 34 8999999999999665
Q ss_pred CCCCccccCCcCcceeeccccccCCc--CCcccCCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEccccccccCCC-c
Q 001384 379 GPLPVEISQMRSLKFLILAHNRFNGS--IPAVYGNMPNLQTLDLSFNELTGPIPPSIGNLTSLLWLMLANNSLSGEIP-G 455 (1088)
Q Consensus 379 ~~~p~~l~~l~~L~~L~L~~N~l~~~--~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~ 455 (1088)
+.+ .+..+++|++|++++|++++. +|..+..+++|++|++++|+++ .+|..+.++++|++|++++|++++..| .
T Consensus 342 ~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 418 (606)
T 3vq2_A 342 ISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFS 418 (606)
T ss_dssp EEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTT
T ss_pred cch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCccChh
Confidence 443 677899999999999999865 4888999999999999999999 477899999999999999999998777 6
Q ss_pred cccCCCCCCeEEccCCcCccCCCchhhccCCCCCccccccccCCcccccCCccccccccccCCCCCCCcceeeehhcccc
Q 001384 456 EIGNCTSLLWLNLSNNKLSGNIPPEVMTIGRNARPTFEANQRNGERTIAGSSECLSMKRWIPADYPPFSFVYTILTRKSC 535 (1088)
Q Consensus 456 ~l~~l~~L~~L~L~~N~l~g~ip~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (1088)
.+.++++|++|++++|++++.+|..+..+
T Consensus 419 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l--------------------------------------------------- 447 (606)
T 3vq2_A 419 AFLSLEKLLYLDISYTNTKIDFDGIFLGL--------------------------------------------------- 447 (606)
T ss_dssp TTTTCTTCCEEECTTSCCEECCTTTTTTC---------------------------------------------------
T ss_pred hhhccccCCEEECcCCCCCccchhhhcCC---------------------------------------------------
Confidence 89999999999999999997776654322
Q ss_pred chhhhhcccCCcccccccCCCcccceeeeceEEccCCcccc-ccCcccccCCCccEEeccccccccCCCCcccCc-cceE
Q 001384 536 RSLWDRLLKGTGIFPVCLPGLASRTFQITGYLQLSGNQLSG-ELSPDIGKLQNFSMVHLGFNQFDGKLPSQFDQL-PLIV 613 (1088)
Q Consensus 536 ~~l~~~~~~~~~~~~~~l~~~~~~~~~~l~~L~l~~N~l~g-~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~l-~l~~ 613 (1088)
..+++|++++|++++ .+|..++.+++|+.|+|++|++++.+|..++.+ .|+.
T Consensus 448 --------------------------~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 501 (606)
T 3vq2_A 448 --------------------------TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQL 501 (606)
T ss_dssp --------------------------TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred --------------------------CCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCE
Confidence 124679999999998 489999999999999999999999999999988 7999
Q ss_pred EEccCCcccccCCccccCCccCcEEEccccccCCcCCccccccc-ccceeeccCCCCcc
Q 001384 614 LNLTRNNFSGEIPSEFGNIKCLQNLDLSYNNFSGPFPASFNNLT-ELSKLNISYNPLVS 671 (1088)
Q Consensus 614 l~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~l~-~L~~l~l~~N~l~~ 671 (1088)
|+|++|++++.+|..|+++++|+.|||++|+|+ .+|..+..++ +|+.|++++|++.+
T Consensus 502 L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 502 LNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp EECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCC
T ss_pred EECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCccc
Confidence 999999999999999999999999999999999 7898899997 59999999999954
No 11
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=6e-50 Score=493.36 Aligned_cols=517 Identities=20% Similarity=0.189 Sum_probs=426.1
Q ss_pred eccccccccccccccccCCccCCeeeCCCCCCCCCcCccCCCCCCCcEEECccccccCcc--cCCCCCCCceeecccccc
Q 001384 84 LNLTDWNISGDIFNNFSALTQLSYLDLSRNTFSGSIPDDLSSCRSLKYLNLSHNILSGDL--NLSGLRSLEILDLSVNRI 161 (1088)
Q Consensus 84 L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~N~l 161 (1088)
++.++++++. +|..+. ++|++|+|++|.+++..+..|+++++|++|+|++|.+++.. .+.++++|++|+|++|++
T Consensus 16 ~~c~~~~l~~-ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l 92 (606)
T 3vq2_A 16 YQCMDQKLSK-VPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI 92 (606)
T ss_dssp EECTTSCCSS-CCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred eEccCCCccc-CCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcc
Confidence 4566666664 344443 78999999999999888889999999999999999999753 589999999999999999
Q ss_pred cccccCchhhhcccceEEeccCccCCCCCCccccCCCCCcEEEccCccccc-c---ccccCcccceecccCccccccccc
Q 001384 162 HGEISFSFPAICEKLVVANLSLNNLTGRIDTCFDGCLNLRYLDLSSNNFRG-N---IWNGLAQLVEFSVSENVLSGVVSS 237 (1088)
Q Consensus 162 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~-~---~~~~l~~L~~L~L~~n~l~~~~~~ 237 (1088)
++..|..+. .+++|++|+|++|++++..+..++++++|++|++++|++++ . .+..+++|++|++++|.+++. +.
T Consensus 93 ~~~~p~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~-~~ 170 (606)
T 3vq2_A 93 QSFSPGSFS-GLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI-TV 170 (606)
T ss_dssp CCCCTTSST-TCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEE-CT
T ss_pred cccChhhcC-CcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceec-Ch
Confidence 988787774 46899999999999999998899999999999999999975 3 355678899999999998864 34
Q ss_pred ccccCCCcc----CEEEcCCCcccccCcccccCCCCCcEEEccCcccc-CCCccccCCCCCCCEEeCCCCcCCc------
Q 001384 238 SVFKENCSL----EIFDLSENEFIGDFPGEVSNCRNLVVLNLFGNNFS-GPIPAEIGSISGLEALFLGKNNFLS------ 306 (1088)
Q Consensus 238 ~~~~~l~~L----~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~------ 306 (1088)
..|..+++| .+|++++|.+++..+..+... +|++|++++|.+. +..|..+.++++|+.+++..+.+..
T Consensus 171 ~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~ 249 (606)
T 3vq2_A 171 NDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEI 249 (606)
T ss_dssp TTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSC
T ss_pred hhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccc
Confidence 445555544 489999999886666655554 8999999999886 4567788889999888876544332
Q ss_pred cCcccccCCC--CCcEEEc-CCCcCCCchhHhhhcccccceeecCcCcccCCCCCccccCCCCcCEEEccCCccCCCCCc
Q 001384 307 VIPESLLNLS--KLEVLDL-SSNNFGGEVQKIFGRFTQVKILALHSNSYIDGMNSSGILKLPNISRLDLSHNNFTGPLPV 383 (1088)
Q Consensus 307 ~~p~~l~~l~--~L~~L~L-~~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 383 (1088)
..+..+..+. +++.+++ ..|.+.+.++. |..+++|+.|++++|.+.. .. .+..+++|++|++++|.+ +.+|
T Consensus 250 ~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~--~l~~~~~L~~L~l~~n~l-~~lp- 323 (606)
T 3vq2_A 250 FEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-LE--DVPKHFKWQSLSIIRCQL-KQFP- 323 (606)
T ss_dssp CCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-CC--CCCTTCCCSEEEEESCCC-SSCC-
T ss_pred cChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchh-hh--hccccccCCEEEcccccC-cccc-
Confidence 1122222222 4677777 77888888887 9999999999999998643 32 778889999999999999 5788
Q ss_pred cccCCcCcceeeccccccCCcCCcccCCCCCCcEEEccCCcCCCC--CCccccCCCCCcEEEccccccccCCCccccCCC
Q 001384 384 EISQMRSLKFLILAHNRFNGSIPAVYGNMPNLQTLDLSFNELTGP--IPPSIGNLTSLLWLMLANNSLSGEIPGEIGNCT 461 (1088)
Q Consensus 384 ~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~--~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 461 (1088)
.+ .+++|+.|++++|+..+.+ .++.+++|++|++++|++++. +|..+..+++|++|++++|.++ .+|..+..++
T Consensus 324 ~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~ 399 (606)
T 3vq2_A 324 TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLE 399 (606)
T ss_dssp CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTTCT
T ss_pred cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhccCCC
Confidence 55 8999999999999766444 577899999999999999865 4888999999999999999998 4778899999
Q ss_pred CCCeEEccCCcCccCCCc-hhhccCCCCCccccccccCCcccccCCccccccccccCCCCCCCcceeeehhccccchhhh
Q 001384 462 SLLWLNLSNNKLSGNIPP-EVMTIGRNARPTFEANQRNGERTIAGSSECLSMKRWIPADYPPFSFVYTILTRKSCRSLWD 540 (1088)
Q Consensus 462 ~L~~L~L~~N~l~g~ip~-~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 540 (1088)
+|++|++++|++++..|. .+..
T Consensus 400 ~L~~L~l~~n~l~~~~~~~~~~~--------------------------------------------------------- 422 (606)
T 3vq2_A 400 ELQHLDFQHSTLKRVTEFSAFLS--------------------------------------------------------- 422 (606)
T ss_dssp TCCEEECTTSEEESTTTTTTTTT---------------------------------------------------------
T ss_pred CCCeeECCCCccCCccChhhhhc---------------------------------------------------------
Confidence 999999999999866552 2211
Q ss_pred hcccCCcccccccCCCcccceeeeceEEccCCccccccCcccccCCCccEEecccccccc-CCCCcccCc-cceEEEccC
Q 001384 541 RLLKGTGIFPVCLPGLASRTFQITGYLQLSGNQLSGELSPDIGKLQNFSMVHLGFNQFDG-KLPSQFDQL-PLIVLNLTR 618 (1088)
Q Consensus 541 ~~~~~~~~~~~~l~~~~~~~~~~l~~L~l~~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g-~~p~~~~~l-~l~~l~l~~ 618 (1088)
+..+++|++++|++++.+|..++.+++|+.|++++|++++ .+|..++.+ .|++|+|++
T Consensus 423 --------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~ 482 (606)
T 3vq2_A 423 --------------------LEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSK 482 (606)
T ss_dssp --------------------CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred --------------------cccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCC
Confidence 1235689999999999999999999999999999999998 489999988 799999999
Q ss_pred CcccccCCccccCCccCcEEEccccccCCcCCcccccccccceeeccCCCCccccCCCC-Cccc-ccccCccCCCCCCC
Q 001384 619 NNFSGEIPSEFGNIKCLQNLDLSYNNFSGPFPASFNNLTELSKLNISYNPLVSGTIPST-GQLA-TFEKTSYLGDPLLD 695 (1088)
Q Consensus 619 N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~l~~L~~l~l~~N~l~~g~ip~~-~~~~-~~~~~~~~~n~~~~ 695 (1088)
|++++..|..|+++++|+.|+|++|++++.+|..++++++|+.|++++|+++ .+|.. ..+. ++....+.+||..|
T Consensus 483 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~--~~p~~~~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 483 CQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE--TSKGILQHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC--CEESCGGGSCTTCCEEECCSCCCCC
T ss_pred CcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc--ccCHhHhhhcccCcEEEccCCCccc
Confidence 9999999999999999999999999999988999999999999999999994 56654 3332 35666788999888
No 12
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=100.00 E-value=7.1e-51 Score=448.22 Aligned_cols=256 Identities=28% Similarity=0.435 Sum_probs=213.6
Q ss_pred CCCCccceecccCceEEEEEEeC------CCcEEEEEEccccCccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCC
Q 001384 805 GKFSEDRIIGKGGFGTVYRGVLP------DGREVAVKKLQREGLEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGS 878 (1088)
Q Consensus 805 ~~~~~~~~LG~G~~g~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~ 878 (1088)
++|.+.+.||+|+||+||+|++. +++.||||+++.......++|.+|++++++ ++|||||+++++|.+++
T Consensus 13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~----l~HpnIV~l~g~~~~~~ 88 (299)
T 4asz_A 13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTN----LQHEHIVKFYGVCVEGD 88 (299)
T ss_dssp GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTT----CCCTTBCCEEEEECSSS
T ss_pred HHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCChHHHHHHHHHHHHHHh----CCCCCCccEEEEEeeCC
Confidence 45778899999999999999864 467899999987665666789999999997 68999999999999999
Q ss_pred eEEEEEEecCCCCHHHHHhhc-------------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCC
Q 001384 879 EKILVYEYMEGGSLEDIISDR-------------TRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEG 945 (1088)
Q Consensus 879 ~~~lv~e~~~~gsL~~~l~~~-------------~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~ 945 (1088)
..++|||||++|+|.++++.. .+++|.+++.|+.|||.||+|||++ +||||||||+|||+++++
T Consensus 89 ~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDlKp~NILl~~~~ 165 (299)
T 4asz_A 89 PLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQ---HFVHRDLATRNCLVGENL 165 (299)
T ss_dssp SEEEEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGG
T ss_pred EEEEEEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCccCHhhEEECCCC
Confidence 999999999999999999764 3599999999999999999999999 999999999999999999
Q ss_pred CEEEeecccceeecCCCCc-ccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHh-CCcCCCCCchhHHHHHHhh
Q 001384 946 KALVTDFGLARVVSAGDSH-VSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELAT-GRRALEGGEECLVEWGRRV 1023 (1088)
Q Consensus 946 ~~kl~Dfg~a~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~ellt-g~~p~~~~~~~~~~~~~~~ 1023 (1088)
.+||+|||+|+.....+.. ......||+.|||||++.+..|+.++|||||||++|||+| |+.||.+..... ....+
T Consensus 166 ~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~~~--~~~~i 243 (299)
T 4asz_A 166 LVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNNE--VIECI 243 (299)
T ss_dssp CEEECCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHH--HHHHH
T ss_pred cEEECCcccceecCCCCceeecCceecChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCHHH--HHHHH
Confidence 9999999999876543332 2334578999999999999999999999999999999999 899998765421 11111
Q ss_pred hccCCCCCCccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhhCC
Q 001384 1024 MGYGRHGPGRAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKILP 1085 (1088)
Q Consensus 1024 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i~~ 1085 (1088)
. .+...+.+..++.++.+++.+||+.||++||+++||++.|+++.+
T Consensus 244 ~----------------~~~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~~i~~~L~~~~~ 289 (299)
T 4asz_A 244 T----------------QGRVLQRPRTCPQEVYELMLGCWQREPHMRKNIKGIHTLLQNLAK 289 (299)
T ss_dssp H----------------HTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred H----------------cCCCCCCCccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHh
Confidence 1 111112233455678999999999999999999999999998754
No 13
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=4.7e-49 Score=501.65 Aligned_cols=515 Identities=21% Similarity=0.201 Sum_probs=318.8
Q ss_pred eccccccccccccccccCCccCCeeeCCCCCCCCCcCccCCCCCCCcEEECccccccC---cccCCCCCCCceeeccccc
Q 001384 84 LNLTDWNISGDIFNNFSALTQLSYLDLSRNTFSGSIPDDLSSCRSLKYLNLSHNILSG---DLNLSGLRSLEILDLSVNR 160 (1088)
Q Consensus 84 L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~---~~~l~~l~~L~~L~Ls~N~ 160 (1088)
.+.++++++.. |. -.++|++|||++|.|++..|..|+++++|++|+|++|.+.+ ...+.++++|++|+|++|.
T Consensus 9 ~dcs~~~L~~v-P~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~ 84 (844)
T 3j0a_A 9 AFYRFCNLTQV-PQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK 84 (844)
T ss_dssp EEESCCCSSCC-CS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC
T ss_pred EEccCCCCCCC-CC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc
Confidence 34566677764 33 45789999999999998889999999999999999996554 2358899999999999999
Q ss_pred ccccccCchhhhcccceEEeccCccCCCCCCcc--ccCCCCCcEEEccCcccccc----ccccCcccceecccCcccccc
Q 001384 161 IHGEISFSFPAICEKLVVANLSLNNLTGRIDTC--FDGCLNLRYLDLSSNNFRGN----IWNGLAQLVEFSVSENVLSGV 234 (1088)
Q Consensus 161 l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~--l~~l~~L~~L~Ls~N~l~~~----~~~~l~~L~~L~L~~n~l~~~ 234 (1088)
+++..|..|. .+++|++|+|++|++++..+.. |.++++|++|+|++|.+++. .+..+++|++|++++|.+++.
T Consensus 85 l~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~ 163 (844)
T 3j0a_A 85 IYFLHPDAFQ-GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV 163 (844)
T ss_dssp CCEECTTSSC-SCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC
T ss_pred CcccCHhHcc-CCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee
Confidence 8877676664 3577888888888888755543 77888888888888877652 233455555555555555443
Q ss_pred cccccccCC--CccCEEEcCCCcccccCcccccCCCC------CcEEEccCccccCCCccccCCC---CCCCEEeCCCC-
Q 001384 235 VSSSVFKEN--CSLEIFDLSENEFIGDFPGEVSNCRN------LVVLNLFGNNFSGPIPAEIGSI---SGLEALFLGKN- 302 (1088)
Q Consensus 235 ~~~~~~~~l--~~L~~L~Ls~n~l~~~~p~~l~~l~~------L~~L~L~~N~l~~~~p~~~~~l---~~L~~L~L~~N- 302 (1088)
.+ ..+..+ ++|+.|+|+.|.+.+..|..+..+++ |++|++++|.+++.++..+... .+++.|.++.+
T Consensus 164 ~~-~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~ 242 (844)
T 3j0a_A 164 CE-HELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI 242 (844)
T ss_dssp CS-GGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSC
T ss_pred CH-HHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccc
Confidence 22 222222 45555555555555555444444433 5555555555554444444322 34444444421
Q ss_pred --------cCCccCcccccCC--CCCcEEEcCCCcCCCchhHhhhcccccceeecCcCcccCCCCCccccCCCCcCEEEc
Q 001384 303 --------NFLSVIPESLLNL--SKLEVLDLSSNNFGGEVQKIFGRFTQVKILALHSNSYIDGMNSSGILKLPNISRLDL 372 (1088)
Q Consensus 303 --------~l~~~~p~~l~~l--~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L 372 (1088)
++....+..|..+ ++|+.|+|++|.+.+..+..|+. +++|+.|+|
T Consensus 243 ~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~-------------------------l~~L~~L~L 297 (844)
T 3j0a_A 243 MGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFET-------------------------LKDLKVLNL 297 (844)
T ss_dssp CBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSS-------------------------CCCCCEEEE
T ss_pred ccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhc-------------------------CCCCCEEEC
Confidence 2222222223322 34555555555554444444444 455555555
Q ss_pred cCCccCCCCCccccCCcCcceeeccccccCCcCCcccCCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEccccccccC
Q 001384 373 SHNNFTGPLPVEISQMRSLKFLILAHNRFNGSIPAVYGNMPNLQTLDLSFNELTGPIPPSIGNLTSLLWLMLANNSLSGE 452 (1088)
Q Consensus 373 s~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 452 (1088)
++|++++..|..|..+++|++|+|++|++++..|..|..+++|+.|++++|++++..+..+.++++|++|+|++|.+++
T Consensus 298 ~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~- 376 (844)
T 3j0a_A 298 AYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT- 376 (844)
T ss_dssp ESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-
T ss_pred CCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc-
Confidence 5555554444445555555555555555544444455555555555555555544444444455555555555555542
Q ss_pred CCccccCCCCCCeEEccCCcCccCCCchhhccCCCCCccccccccCCcccccCCccccccccccCCCCCCCcceeeehhc
Q 001384 453 IPGEIGNCTSLLWLNLSNNKLSGNIPPEVMTIGRNARPTFEANQRNGERTIAGSSECLSMKRWIPADYPPFSFVYTILTR 532 (1088)
Q Consensus 453 ~p~~l~~l~~L~~L~L~~N~l~g~ip~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (1088)
++. +++|+.|++++|+++ .+|... ..+..+.+..|...+.. ...
T Consensus 377 i~~----~~~L~~L~l~~N~l~-~l~~~~---~~l~~L~ls~N~l~~l~--------------------~~~-------- 420 (844)
T 3j0a_A 377 IHF----IPSIPDIFLSGNKLV-TLPKIN---LTANLIHLSENRLENLD--------------------ILY-------- 420 (844)
T ss_dssp CSS----CCSCSEEEEESCCCC-CCCCCC---TTCCEEECCSCCCCSST--------------------THH--------
T ss_pred ccC----CCCcchhccCCCCcc-cccccc---cccceeecccCccccCc--------------------hhh--------
Confidence 221 444555555555554 343321 11112222222211100 000
Q ss_pred cccchhhhhcccCCcccccccCCCcccceeeeceEEccCCccccccCc-ccccCCCccEEeccccccc-----cCCCCcc
Q 001384 533 KSCRSLWDRLLKGTGIFPVCLPGLASRTFQITGYLQLSGNQLSGELSP-DIGKLQNFSMVHLGFNQFD-----GKLPSQF 606 (1088)
Q Consensus 533 ~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~l~~L~l~~N~l~g~~p~-~~~~l~~L~~L~l~~N~l~-----g~~p~~~ 606 (1088)
....+..+++|+|++|++++..+. .+..+++|+.|+|++|.++ +..|..|
T Consensus 421 ------------------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~ 476 (844)
T 3j0a_A 421 ------------------------FLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVF 476 (844)
T ss_dssp ------------------------HHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCS
T ss_pred ------------------------hhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhh
Confidence 000122357899999999976554 4566899999999999997 4555677
Q ss_pred cCc-cceEEEccCCcccccCCccccCCccCcEEEccccccCCcCCcccccccccceeeccCCCCccccCCCCCccccccc
Q 001384 607 DQL-PLIVLNLTRNNFSGEIPSEFGNIKCLQNLDLSYNNFSGPFPASFNNLTELSKLNISYNPLVSGTIPSTGQLATFEK 685 (1088)
Q Consensus 607 ~~l-~l~~l~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~l~~L~~l~l~~N~l~~g~ip~~~~~~~~~~ 685 (1088)
..+ .|+.|+|++|++++..|..|.++++|+.|+|++|+|++..|..+. ++|+.|+|++|++ .|.+|.. +..+..
T Consensus 477 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l-~~~~~~~--~~~L~~ 551 (844)
T 3j0a_A 477 EGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQL-LAPNPDV--FVSLSV 551 (844)
T ss_dssp SCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECC-CCCCSCC--CSSCCE
T ss_pred cCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcC-CCCChhH--hCCcCE
Confidence 777 699999999999998899999999999999999999976666665 8999999999999 7787755 556777
Q ss_pred CccCCCCCCC
Q 001384 686 TSYLGDPLLD 695 (1088)
Q Consensus 686 ~~~~~n~~~~ 695 (1088)
..+.+||..|
T Consensus 552 l~l~~Np~~C 561 (844)
T 3j0a_A 552 LDITHNKFIC 561 (844)
T ss_dssp EEEEEECCCC
T ss_pred EEecCCCccc
Confidence 7788998777
No 14
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=100.00 E-value=2.6e-50 Score=450.06 Aligned_cols=256 Identities=27% Similarity=0.395 Sum_probs=207.8
Q ss_pred CCCccceecccCceEEEEEEeC------CCcEEEEEEccccCccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCe
Q 001384 806 KFSEDRIIGKGGFGTVYRGVLP------DGREVAVKKLQREGLEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSE 879 (1088)
Q Consensus 806 ~~~~~~~LG~G~~g~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~ 879 (1088)
+|.+.+.||+|+||+||+|+++ +++.||||+++.......++|.+|++++++ ++|||||+++++|.+++.
T Consensus 42 d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~----l~HpnIV~l~g~~~~~~~ 117 (329)
T 4aoj_A 42 DIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTM----LQHQHIVRFFGVCTEGRP 117 (329)
T ss_dssp GEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTT----CCCTTBCCEEEEECSSSS
T ss_pred HeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCCHHHHHHHHHHHHHHHh----CCCCCCCcEEEEEEECCE
Confidence 4667789999999999999864 478899999987766666789999999997 689999999999999999
Q ss_pred EEEEEEecCCCCHHHHHhhc---------------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCC
Q 001384 880 KILVYEYMEGGSLEDIISDR---------------TRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKE 944 (1088)
Q Consensus 880 ~~lv~e~~~~gsL~~~l~~~---------------~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~ 944 (1088)
.|+|||||++|+|.++++.. .+++|.++++|+.|||.||+|||++ +||||||||+|||++++
T Consensus 118 ~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDLKp~NILl~~~ 194 (329)
T 4aoj_A 118 LLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGL---HFVHRDLATRNCLVGQG 194 (329)
T ss_dssp EEEEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEETT
T ss_pred EEEEEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhcC---CeecccccHhhEEECCC
Confidence 99999999999999999753 3589999999999999999999999 99999999999999999
Q ss_pred CCEEEeecccceeecCCCCc-ccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHh-CCcCCCCCchhHHHHHHh
Q 001384 945 GKALVTDFGLARVVSAGDSH-VSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELAT-GRRALEGGEECLVEWGRR 1022 (1088)
Q Consensus 945 ~~~kl~Dfg~a~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~ellt-g~~p~~~~~~~~~~~~~~ 1022 (1088)
+.+||+|||+|+.....+.. ......||+.|||||++.+..|+.++|||||||++|||+| |+.||.+..... ....
T Consensus 195 ~~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~~~--~~~~ 272 (329)
T 4aoj_A 195 LVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNTE--AIDC 272 (329)
T ss_dssp TEEEECCCC----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCHHH--HHHH
T ss_pred CcEEEcccccceeccCCCcceecCcccccccccChhhhcCCCCCccccccchHHHHHHHHcCCCCCCCCCCHHH--HHHH
Confidence 99999999999876543322 3345679999999999999999999999999999999999 899998764421 1111
Q ss_pred hhccCCCCCCccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhhCCC
Q 001384 1023 VMGYGRHGPGRAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKILPH 1086 (1088)
Q Consensus 1023 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i~~~ 1086 (1088)
+. .+...+.+..++.++.+++.+||+.||++|||++||++.|+.+.+.
T Consensus 273 i~----------------~g~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~~ 320 (329)
T 4aoj_A 273 IT----------------QGRELERPRACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALAQA 320 (329)
T ss_dssp HH----------------HTCCCCCCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHHHHHHHHHS
T ss_pred HH----------------cCCCCCCcccccHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHhhC
Confidence 11 1111122334456788999999999999999999999999998654
No 15
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=100.00 E-value=1.2e-49 Score=440.50 Aligned_cols=254 Identities=23% Similarity=0.322 Sum_probs=211.3
Q ss_pred CCCccceecccCceEEEEEEeC------CCcEEEEEEccccCc-cchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCC
Q 001384 806 KFSEDRIIGKGGFGTVYRGVLP------DGREVAVKKLQREGL-EGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGS 878 (1088)
Q Consensus 806 ~~~~~~~LG~G~~g~Vy~~~~~------~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~ 878 (1088)
++++.+.||+|+||+||+|++. +++.||||+++.... ...++|.+|+.++++ ++|||||+++|+|.+++
T Consensus 27 ~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~----l~HpNIV~l~g~~~~~~ 102 (308)
T 4gt4_A 27 AVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRAR----LQHPNVVCLLGVVTKDQ 102 (308)
T ss_dssp GEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHH----CCCTTBCCEEEEECSSS
T ss_pred HCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHHh----CCCCCCCCcceEEEECC
Confidence 3566789999999999999863 467899999976532 345789999999997 68999999999999999
Q ss_pred eEEEEEEecCCCCHHHHHhhc----------------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEc
Q 001384 879 EKILVYEYMEGGSLEDIISDR----------------TRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLD 942 (1088)
Q Consensus 879 ~~~lv~e~~~~gsL~~~l~~~----------------~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~ 942 (1088)
..++|||||++|+|.++++.. ..++|.++.+|+.|||+||+|||++ +||||||||+|||++
T Consensus 103 ~~~lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDLK~~NILl~ 179 (308)
T 4gt4_A 103 PLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSH---HVVHKDLATRNVLVY 179 (308)
T ss_dssp SCEEEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEC
T ss_pred EEEEEEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhC---CCCCCCccccceEEC
Confidence 999999999999999999653 3489999999999999999999999 999999999999999
Q ss_pred CCCCEEEeecccceeecCCCC-cccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHh-CCcCCCCCchhHHHHH
Q 001384 943 KEGKALVTDFGLARVVSAGDS-HVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELAT-GRRALEGGEECLVEWG 1020 (1088)
Q Consensus 943 ~~~~~kl~Dfg~a~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~ellt-g~~p~~~~~~~~~~~~ 1020 (1088)
+++.+||+|||+|+.....+. .......||++|||||++.+..|+.++|||||||++|||+| |+.||.+..... ..
T Consensus 180 ~~~~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~~~--~~ 257 (308)
T 4gt4_A 180 DKLNVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQD--VV 257 (308)
T ss_dssp GGGCEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCHHH--HH
T ss_pred CCCCEEECCcccceeccCCCceeEecccccCCcccCHHHHhCCCCCccchhhhHHHHHHHHHhCCCCCCCCCCHHH--HH
Confidence 999999999999987654332 23445689999999999999999999999999999999998 899998765421 11
Q ss_pred HhhhccCCCCCCccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhhC
Q 001384 1021 RRVMGYGRHGPGRAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKIL 1084 (1088)
Q Consensus 1021 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i~ 1084 (1088)
..+. .+...+.+..++..+.+++.+||+.||++||+|+||++.|+...
T Consensus 258 ~~i~----------------~~~~~~~p~~~~~~~~~li~~C~~~dP~~RPs~~ei~~~L~a~~ 305 (308)
T 4gt4_A 258 EMIR----------------NRQVLPCPDDCPAWVYALMIECWNEFPSRRPRFKDIHSRLRAWG 305 (308)
T ss_dssp HHHH----------------TTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSC
T ss_pred HHHH----------------cCCCCCCcccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHhcc
Confidence 1221 11112223445677899999999999999999999999999764
No 16
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=100.00 E-value=2.2e-48 Score=427.99 Aligned_cols=257 Identities=28% Similarity=0.372 Sum_probs=202.4
Q ss_pred CCCCccceecccCceEEEEEEeCCCcEEEEEEccccCc--cchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeEEE
Q 001384 805 GKFSEDRIIGKGGFGTVYRGVLPDGREVAVKKLQREGL--EGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEKIL 882 (1088)
Q Consensus 805 ~~~~~~~~LG~G~~g~Vy~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~~l 882 (1088)
++|++.+.||+|+||+||+|+++ ..||||+++.... ...+.|.+|++++++ ++|||||++++++.+ +..++
T Consensus 36 ~~l~l~~~iG~G~fG~Vy~~~~~--~~vAvK~~~~~~~~~~~~~~f~~E~~il~~----l~HpNIV~l~g~~~~-~~~~i 108 (307)
T 3omv_A 36 SEVMLSTRIGSGSFGTVYKGKWH--GDVAVKILKVVDPTPEQFQAFRNEVAVLRK----TRHVNILLFMGYMTK-DNLAI 108 (307)
T ss_dssp TSCCEEEECCCCSSSEEEEEESS--SEEEEEECCCSSCCHHHHHHHHHHHHHHTT----CCCTTBCCEEEEECS-SSCEE
T ss_pred HHeEEeeEEeeCCCcEEEEEEEC--CcEEEEEEEecCCCHHHHHHHHHHHHHHHh----CCCCCEeeEEEEEEC-CeEEE
Confidence 56788899999999999999975 3699999975432 234679999999997 689999999998865 56899
Q ss_pred EEEecCCCCHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccceeecCC
Q 001384 883 VYEYMEGGSLEDIISDR-TRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARVVSAG 961 (1088)
Q Consensus 883 v~e~~~~gsL~~~l~~~-~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~~~~ 961 (1088)
|||||++|+|.++++.. .++++.++..|+.|||.||+|||++ +||||||||+|||+++++.+||+|||+|+.....
T Consensus 109 VmEy~~gGsL~~~l~~~~~~l~~~~~~~i~~qia~gL~yLH~~---~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~ 185 (307)
T 3omv_A 109 VTQWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAK---NIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRW 185 (307)
T ss_dssp EEECCSSCBHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCCSSSEEEETTEEEEECCCSSCBC----
T ss_pred EEEcCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CccCCccCHHHEEECCCCcEEEeeccCceecccC
Confidence 99999999999999764 5799999999999999999999999 9999999999999999999999999999876533
Q ss_pred C-CcccccccccccccCccccC---CCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCCCCCccccc
Q 001384 962 D-SHVSTTIAGTVGYVAPEYGQ---TWQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRHGPGRAVIP 1037 (1088)
Q Consensus 962 ~-~~~~~~~~gt~~y~aPE~~~---~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1037 (1088)
. .......+||+.|||||++. ...|+.++|||||||++|||+||+.||.+........ ..... ....+.
T Consensus 186 ~~~~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~~~~~-~~~~~-~~~~p~----- 258 (307)
T 3omv_A 186 SGSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQII-FMVGR-GYASPD----- 258 (307)
T ss_dssp --------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHH-HHHHT-TCCCCC-----
T ss_pred CcceeecccccCCCccCHHHhhccCCCCCCcHHHhHhHHHHHHHHHHCCCCCCCCChHHHHH-HHHhc-CCCCCC-----
Confidence 2 22345578999999999875 3468999999999999999999999998754321111 11110 000000
Q ss_pred hhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhhC
Q 001384 1038 VVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKIL 1084 (1088)
Q Consensus 1038 ~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i~ 1084 (1088)
....+..++..+.+++.+||+.||++|||++||++.|+.+.
T Consensus 259 ------~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~Le~l~ 299 (307)
T 3omv_A 259 ------LSKLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQ 299 (307)
T ss_dssp ------STTSCTTSCHHHHHHHHHHTCSSSTTSCCHHHHHHHHHHHH
T ss_pred ------cccccccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHh
Confidence 00112334567889999999999999999999999998764
No 17
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=100.00 E-value=1.6e-48 Score=434.06 Aligned_cols=249 Identities=26% Similarity=0.402 Sum_probs=210.5
Q ss_pred CCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeEEEE
Q 001384 805 GKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGLEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEKILV 883 (1088)
Q Consensus 805 ~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~~lv 883 (1088)
+.|++.+.||+|+||+||+|+++ +|+.||||++........+.+.+|+++++. ++|||||++++++.+++..|+|
T Consensus 74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~----l~HpnIV~l~~~~~~~~~~~iv 149 (346)
T 4fih_A 74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRD----YQHENVVEMYNSYLVGDELWVV 149 (346)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHH----CCCTTBCCEEEEEEETTEEEEE
T ss_pred HhcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCchhHHHHHHHHHHHHHh----CCCCCCCcEEEEEEECCEEEEE
Confidence 46888999999999999999976 699999999987655566778999999997 6799999999999999999999
Q ss_pred EEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccceeecCCCC
Q 001384 884 YEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARVVSAGDS 963 (1088)
Q Consensus 884 ~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~~~~~~ 963 (1088)
||||+||+|.++++. .++++.+++.|+.||+.||+|||++ +||||||||+|||++.+|.+||+|||+|+.+....
T Consensus 150 mEy~~gg~L~~~l~~-~~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~- 224 (346)
T 4fih_A 150 MEFLEGGALTDIVTH-TRMNEEQIAAVCLAVLQALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEV- 224 (346)
T ss_dssp ECCCTTEEHHHHHHH-SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECCSSS-
T ss_pred EeCCCCCcHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHC---CcccccCCHHHEEECCCCCEEEecCcCceecCCCC-
Confidence 999999999999976 5699999999999999999999999 99999999999999999999999999998875432
Q ss_pred cccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCCCCCccccchhhcCC
Q 001384 964 HVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRHGPGRAVIPVVLLGS 1043 (1088)
Q Consensus 964 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1043 (1088)
......+||+.|||||++.+..|+.++||||+||++|||++|+.||.+...... ...+... . ..
T Consensus 225 ~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~--~~~i~~~-~-~~------------ 288 (346)
T 4fih_A 225 PRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKA--MKMIRDN-L-PP------------ 288 (346)
T ss_dssp CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHH--HHHHHHS-S-CC------------
T ss_pred CcccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHH--HHHHHcC-C-CC------------
Confidence 234567899999999999999999999999999999999999999987644211 1111100 0 00
Q ss_pred CccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1044 GLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1044 ~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
..........++.+|+.+||+.||++|||++|+++
T Consensus 289 ~~~~~~~~s~~~~dli~~~L~~dP~~R~ta~e~l~ 323 (346)
T 4fih_A 289 RLKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLK 323 (346)
T ss_dssp CCSCGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred CCCccccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 00112233457888999999999999999999875
No 18
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=100.00 E-value=3e-49 Score=440.78 Aligned_cols=248 Identities=27% Similarity=0.415 Sum_probs=202.6
Q ss_pred CCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCcc--chHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeEE
Q 001384 805 GKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGLE--GEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEKI 881 (1088)
Q Consensus 805 ~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~--~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~~ 881 (1088)
++|++.+.||+|+||+||+|+++ +|+.||||++.+.... ..+.+.+|++++++ ++|||||++++++.+++..|
T Consensus 24 e~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~----l~HpnIV~~~~~~~~~~~~y 99 (350)
T 4b9d_A 24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLAN----MKHPNIVQYRESFEENGSLY 99 (350)
T ss_dssp CCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHH----CCCTTBCCEEEEEEETTEEE
T ss_pred cceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHH----CCCCCCCcEEEEEEECCEEE
Confidence 58999999999999999999975 6999999999765432 34578999999997 67999999999999999999
Q ss_pred EEEEecCCCCHHHHHhhcC--CCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccceeec
Q 001384 882 LVYEYMEGGSLEDIISDRT--RLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARVVS 959 (1088)
Q Consensus 882 lv~e~~~~gsL~~~l~~~~--~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~~ 959 (1088)
+|||||+||+|.++++..+ .+++.+++.|+.||+.||+|||++ +||||||||+|||+++++.+||+|||+|+.+.
T Consensus 100 iVmEy~~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~ 176 (350)
T 4b9d_A 100 IVMDYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVHDR---KILHRDIKSQNIFLTKDGTVQLGDFGIARVLN 176 (350)
T ss_dssp EEEECCTTCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHT---TCEETTCCGGGEEECTTCCEEECSTTEESCCC
T ss_pred EEEeCCCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCCHHHEEECCCCCEEEcccccceeec
Confidence 9999999999999997543 578999999999999999999999 99999999999999999999999999998764
Q ss_pred CCCCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCCCCCccccchh
Q 001384 960 AGDSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRHGPGRAVIPVV 1039 (1088)
Q Consensus 960 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1039 (1088)
.. .......+||+.|||||++.+..|+.++||||+||++|||+||+.||.+..... ....+.....
T Consensus 177 ~~-~~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~~--~~~~i~~~~~----------- 242 (350)
T 4b9d_A 177 ST-VELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSMKN--LVLKIISGSF----------- 242 (350)
T ss_dssp HH-HHHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHH--HHHHHHHTCC-----------
T ss_pred CC-cccccccCCCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHH--HHHHHHcCCC-----------
Confidence 21 122345689999999999999999999999999999999999999998765422 2222221110
Q ss_pred hcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1040 LLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1040 ~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
.+.+.....++.+++.+||+.||++||+++|+++
T Consensus 243 -----~~~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~ 276 (350)
T 4b9d_A 243 -----PPVSLHYSYDLRSLVSQLFKRNPRDRPSVNSILE 276 (350)
T ss_dssp -----CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred -----CCCCccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 0112223457888999999999999999999975
No 19
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=100.00 E-value=8.2e-49 Score=435.32 Aligned_cols=252 Identities=26% Similarity=0.292 Sum_probs=206.9
Q ss_pred CCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeEEEE
Q 001384 805 GKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGLEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEKILV 883 (1088)
Q Consensus 805 ~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~~lv 883 (1088)
+.|++.++||+|+||+||+|+++ +|+.||||+++..... .+|+.+++. ++|||||++++++.+++..|+|
T Consensus 58 ~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~~-----~~E~~il~~----l~HpnIV~l~~~~~~~~~~~iv 128 (336)
T 4g3f_A 58 HWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVFR-----VEELVACAG----LSSPRIVPLYGAVREGPWVNIF 128 (336)
T ss_dssp TEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCC-----THHHHTTTT----CCCTTBCCEEEEEEETTEEEEE
T ss_pred hheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHHHhH-----HHHHHHHHh----CCCCCCCcEEEEEEECCEEEEE
Confidence 46788889999999999999976 6899999999765322 468888876 6899999999999999999999
Q ss_pred EEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCC-CEEEeecccceeecCCC
Q 001384 884 YEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEG-KALVTDFGLARVVSAGD 962 (1088)
Q Consensus 884 ~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~-~~kl~Dfg~a~~~~~~~ 962 (1088)
||||+||+|.+++++.+++++.+++.|+.||+.||+|||++ +||||||||+|||++.+| ++||+|||+|+.+....
T Consensus 129 mEy~~gg~L~~~l~~~~~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~~ 205 (336)
T 4g3f_A 129 MELLEGGSLGQLIKQMGCLPEDRALYYLGQALEGLEYLHTR---RILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDG 205 (336)
T ss_dssp ECCCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCCGGGEEECTTSCCEEECCCTTCEEC----
T ss_pred EeccCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CceecccCHHHEEEeCCCCEEEEeeCCCCeEccCCC
Confidence 99999999999999988999999999999999999999999 999999999999999998 69999999999875432
Q ss_pred Cc----ccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCCCCCccccch
Q 001384 963 SH----VSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRHGPGRAVIPV 1038 (1088)
Q Consensus 963 ~~----~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1038 (1088)
.. .....+||+.|||||++.+..|+.++||||+||++|||+||+.||.+........ .+... ....
T Consensus 206 ~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~--~i~~~---~~~~----- 275 (336)
T 4g3f_A 206 LGKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPLCL--KIASE---PPPI----- 275 (336)
T ss_dssp --------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSCCHH--HHHHS---CCGG-----
T ss_pred cccceecCCccccCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHHHHH--HHHcC---CCCc-----
Confidence 11 1234679999999999999999999999999999999999999998754311111 11100 0000
Q ss_pred hhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhhC
Q 001384 1039 VLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKIL 1084 (1088)
Q Consensus 1039 ~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i~ 1084 (1088)
...+...+..+.+++.+||+.||++|||+.|+++.+.+++
T Consensus 276 ------~~~~~~~s~~~~~li~~~L~~dP~~R~sa~el~~~l~~~l 315 (336)
T 4g3f_A 276 ------REIPPSCAPLTAQAIQEGLRKEPVHRASAMELRRKVGKAL 315 (336)
T ss_dssp ------GGSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred ------hhcCccCCHHHHHHHHHHccCCHhHCcCHHHHHHHHHHHH
Confidence 0112334567888999999999999999999999988764
No 20
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=100.00 E-value=6.1e-49 Score=430.86 Aligned_cols=247 Identities=24% Similarity=0.332 Sum_probs=210.2
Q ss_pred CCCCccceecccCceEEEEEEeC-CCcEEEEEEccccC---ccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeE
Q 001384 805 GKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREG---LEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEK 880 (1088)
Q Consensus 805 ~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~ 880 (1088)
++|++.+.||+|+||+||+|+++ +|+.||||++.+.. ....+.+.+|++++++ ++|||||++++++.+++..
T Consensus 32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~----l~HpnIv~l~~~~~~~~~~ 107 (311)
T 4aw0_A 32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSR----LDHPFFVKLYFTFQDDEKL 107 (311)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTT----CCCTTBCCEEEEEECSSEE
T ss_pred cccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHh----CCCCCCCeEEEEEEeCCEE
Confidence 46999999999999999999975 78999999997642 2334678999999987 6899999999999999999
Q ss_pred EEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccceeecC
Q 001384 881 ILVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARVVSA 960 (1088)
Q Consensus 881 ~lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~~~ 960 (1088)
|+|||||+||+|.+++++.+.+++.+++.|+.||+.||+|||++ +||||||||+|||++.++.+||+|||+|+.+..
T Consensus 108 yivmEy~~gG~L~~~i~~~~~l~e~~~~~~~~qi~~al~ylH~~---~IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~ 184 (311)
T 4aw0_A 108 YFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKVLSP 184 (311)
T ss_dssp EEEECCCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCCTTCEECCT
T ss_pred EEEEecCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCCHHHeEEcCCCCEEEEEcCCceecCC
Confidence 99999999999999999988999999999999999999999999 999999999999999999999999999998764
Q ss_pred CC-CcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCCCCCccccchh
Q 001384 961 GD-SHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRHGPGRAVIPVV 1039 (1088)
Q Consensus 961 ~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1039 (1088)
.. .......+||+.|||||++.+..|+.++||||+||++|||++|+.||.+.+... ....+.....
T Consensus 185 ~~~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~--~~~~i~~~~~----------- 251 (311)
T 4aw0_A 185 ESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEGL--IFAKIIKLEY----------- 251 (311)
T ss_dssp TTTCCCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCSSHHH--HHHHHHHTCC-----------
T ss_pred CCCcccccCcccCcccCCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHH--HHHHHHcCCC-----------
Confidence 33 233456789999999999999999999999999999999999999998765422 1222221110
Q ss_pred hcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHH
Q 001384 1040 LLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVL 1077 (1088)
Q Consensus 1040 ~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil 1077 (1088)
..+.....++.+++.+|++.||++||+++|+.
T Consensus 252 ------~~p~~~s~~~~dli~~lL~~dp~~R~t~~e~~ 283 (311)
T 4aw0_A 252 ------DFPEKFFPKARDLVEKLLVLDATKRLGCEEME 283 (311)
T ss_dssp ------CCCTTCCHHHHHHHHHHSCSSGGGSTTSGGGT
T ss_pred ------CCCcccCHHHHHHHHHHccCCHhHCcChHHHc
Confidence 00112235678899999999999999999863
No 21
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.3e-47 Score=466.66 Aligned_cols=489 Identities=20% Similarity=0.216 Sum_probs=363.6
Q ss_pred CcccCCceeCCCCceeEEeccccccccccccccccCCccCCeeeCCCCCCCCCcCccCCCCCCCcEEECccccccCcc--
Q 001384 66 PCEWPGIICSPDKARVNGLNLTDWNISGDIFNNFSALTQLSYLDLSRNTFSGSIPDDLSSCRSLKYLNLSHNILSGDL-- 143 (1088)
Q Consensus 66 ~C~W~gv~C~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-- 143 (1088)
.|.|.|+ |+.. +++++. +|+.+. ++|++|+|++|++++..|..|+++++|++|+|++|.+++..
T Consensus 3 ~C~~~~~-c~~~----------~~~l~~-ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~ 68 (549)
T 2z81_A 3 SCDASGV-CDGR----------SRSFTS-IPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD 68 (549)
T ss_dssp EECTTSE-EECT----------TSCCSS-CCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTT
T ss_pred cCCCCce-EECC----------CCcccc-ccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChh
Confidence 5999999 8643 344443 444443 78999999999999888899999999999999999998754
Q ss_pred cCCCCCCCceeecccccccccccCchhhhcccceEEeccCccCCCC-CCccccCCCCCcEEEccCccccccccccCcccc
Q 001384 144 NLSGLRSLEILDLSVNRIHGEISFSFPAICEKLVVANLSLNNLTGR-IDTCFDGCLNLRYLDLSSNNFRGNIWNGLAQLV 222 (1088)
Q Consensus 144 ~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~L~ 222 (1088)
.+.++++|++|+|++|++++..+..+ ..+++|++|+|++|++++. .|..+.++++|++|++++|++.+
T Consensus 69 ~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~---------- 137 (549)
T 2z81_A 69 AFYSLGSLEHLDLSDNHLSSLSSSWF-GPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFS---------- 137 (549)
T ss_dssp TTTTCTTCCEEECTTSCCCSCCHHHH-TTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC----------
T ss_pred hccccccCCEEECCCCccCccCHHHh-ccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCcccc----------
Confidence 48899999999999999886655444 3457788888888888763 45677778888888887776332
Q ss_pred eecccCcccccccccccccCCCccCEEEcCCCcccccCcccccCCCCCcEEEccCccccCCCcccc-CCCCCCCEEeCCC
Q 001384 223 EFSVSENVLSGVVSSSVFKENCSLEIFDLSENEFIGDFPGEVSNCRNLVVLNLFGNNFSGPIPAEI-GSISGLEALFLGK 301 (1088)
Q Consensus 223 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~-~~l~~L~~L~L~~ 301 (1088)
.++...|..+++|++|++++|++++..|..+.++++|++|++++|.+. .+|..+ ..+++|+.|++++
T Consensus 138 -----------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~ 205 (549)
T 2z81_A 138 -----------EIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRD 205 (549)
T ss_dssp -----------EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEES
T ss_pred -----------ccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccC
Confidence 334445666778888888888888878888888888888888888876 444443 5678888888888
Q ss_pred CcCCccC--c-ccccCCCCCcEEEcCCCcCCCchhHh----hhcccccceeecCcCcccCCC-----CCccccCCCCcCE
Q 001384 302 NNFLSVI--P-ESLLNLSKLEVLDLSSNNFGGEVQKI----FGRFTQVKILALHSNSYIDGM-----NSSGILKLPNISR 369 (1088)
Q Consensus 302 N~l~~~~--p-~~l~~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~L~~n~~~~~~-----~~~~~~~l~~L~~ 369 (1088)
|++++.. | .....+++|+.|++++|.+++..+.. +..+++|+.+++++|.+.... ....+..+++|+.
T Consensus 206 n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~ 285 (549)
T 2z81_A 206 TNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVET 285 (549)
T ss_dssp CBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCE
T ss_pred CccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhccccc
Confidence 8887642 2 22345678888888888887655443 355677888888877654321 1234456788888
Q ss_pred EEccCCccCCC-----CCccccCCcCcceeeccccccCCcCCccc-CCCCCCcEEEccCCcCCCCCCc---cccCCCCCc
Q 001384 370 LDLSHNNFTGP-----LPVEISQMRSLKFLILAHNRFNGSIPAVY-GNMPNLQTLDLSFNELTGPIPP---SIGNLTSLL 440 (1088)
Q Consensus 370 L~Ls~N~l~~~-----~p~~l~~l~~L~~L~L~~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~---~~~~l~~L~ 440 (1088)
|++.++.+... ++..+...++|+.|++++|+++ .+|..+ ..+++|++|++++|++++.+|. .++.+++|+
T Consensus 286 L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~ 364 (549)
T 2z81_A 286 VTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQ 364 (549)
T ss_dssp EEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCC
T ss_pred ccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCc
Confidence 88888876531 2222344567888999999887 677666 4688899999999998876643 467888899
Q ss_pred EEEccccccccCCC--ccccCCCCCCeEEccCCcCccCCCchhhccCCCCCccccccccCCcccccCCccccccccccCC
Q 001384 441 WLMLANNSLSGEIP--GEIGNCTSLLWLNLSNNKLSGNIPPEVMTIGRNARPTFEANQRNGERTIAGSSECLSMKRWIPA 518 (1088)
Q Consensus 441 ~L~L~~N~l~~~~p--~~l~~l~~L~~L~L~~N~l~g~ip~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~ 518 (1088)
+|+|++|++++..+ ..++.+++|++|++++|+++ .+|..+..+
T Consensus 365 ~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~---------------------------------- 409 (549)
T 2z81_A 365 TLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWP---------------------------------- 409 (549)
T ss_dssp EEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCC----------------------------------
T ss_pred EEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhccc----------------------------------
Confidence 99999998885322 45788889999999999888 566543211
Q ss_pred CCCCCcceeeehhccccchhhhhcccCCcccccccCCCcccceeeeceEEccCCccccccCcccccCCCccEEecccccc
Q 001384 519 DYPPFSFVYTILTRKSCRSLWDRLLKGTGIFPVCLPGLASRTFQITGYLQLSGNQLSGELSPDIGKLQNFSMVHLGFNQF 598 (1088)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~l~~L~l~~N~l~g~~p~~~~~l~~L~~L~l~~N~l 598 (1088)
..+++|++++|+++ .+|..+. ++|+.|+|++|++
T Consensus 410 -------------------------------------------~~L~~L~Ls~N~l~-~l~~~~~--~~L~~L~Ls~N~l 443 (549)
T 2z81_A 410 -------------------------------------------EKMRFLNLSSTGIR-VVKTCIP--QTLEVLDVSNNNL 443 (549)
T ss_dssp -------------------------------------------TTCCEEECTTSCCS-CCCTTSC--TTCSEEECCSSCC
T ss_pred -------------------------------------------ccccEEECCCCCcc-cccchhc--CCceEEECCCCCh
Confidence 12457888888887 4565543 5788999999999
Q ss_pred ccCCCCcccCc-cceEEEccCCcccccCCccccCCccCcEEEccccccCCcCCcccccccccceeeccCCCCccccCCCC
Q 001384 599 DGKLPSQFDQL-PLIVLNLTRNNFSGEIPSEFGNIKCLQNLDLSYNNFSGPFPASFNNLTELSKLNISYNPLVSGTIPST 677 (1088)
Q Consensus 599 ~g~~p~~~~~l-~l~~l~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~l~~L~~l~l~~N~l~~g~ip~~ 677 (1088)
++.+ +.+ .|++|+|++|+++ .||. .+.+++|+.|||++|+|++.+|..++.+++|+.|++++|++ .+.+|..
T Consensus 444 ~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~-~~~~~~~ 516 (549)
T 2z81_A 444 DSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW-DCSCPRI 516 (549)
T ss_dssp SCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCB-CCCHHHH
T ss_pred hhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCc-cCCCccH
Confidence 8643 234 6889999999998 7887 57899999999999999988888899999999999999999 5666643
Q ss_pred Ccc
Q 001384 678 GQL 680 (1088)
Q Consensus 678 ~~~ 680 (1088)
..+
T Consensus 517 ~~l 519 (549)
T 2z81_A 517 DYL 519 (549)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 22
>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A
Probab=100.00 E-value=8.1e-48 Score=416.55 Aligned_cols=245 Identities=24% Similarity=0.350 Sum_probs=193.7
Q ss_pred CCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCc---cchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeE
Q 001384 805 GKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGL---EGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEK 880 (1088)
Q Consensus 805 ~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~ 880 (1088)
++|++.+.||+|+||+||+|+++ +|+.||||++.+... ...+.+.+|++++++ ++|||||++++++.+++..
T Consensus 13 g~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~----l~HpnIv~~~~~~~~~~~~ 88 (275)
T 3hyh_A 13 GNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRL----LRHPHIIKLYDVIKSKDEI 88 (275)
T ss_dssp -CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHH----CCCTTBCCEEEEEECSSEE
T ss_pred eCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHH----CCCCCCCeEEEEEEECCEE
Confidence 68999999999999999999975 699999999976532 234578999999997 6799999999999999999
Q ss_pred EEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccceeecC
Q 001384 881 ILVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARVVSA 960 (1088)
Q Consensus 881 ~lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~~~ 960 (1088)
|+||||+ +|+|.+++.+++++++.+++.++.||+.||+|||++ +|+||||||+|||+++++.+||+|||+|+....
T Consensus 89 ~ivmEy~-~g~L~~~l~~~~~l~e~~~~~~~~qi~~al~ylH~~---~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~ 164 (275)
T 3hyh_A 89 IMVIEYA-GNELFDYIVQRDKMSEQEARRFFQQIISAVEYCHRH---KIVHRDLKPENLLLDEHLNVKIADFGLSNIMTD 164 (275)
T ss_dssp EEEEECC-CEEHHHHHHHSCSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCTTTEEECTTCCEEECCSSCC-----
T ss_pred EEEEeCC-CCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CcccccCChHHeEECCCCCEEEeecCCCeecCC
Confidence 9999999 679999999999999999999999999999999999 999999999999999999999999999987643
Q ss_pred CCCcccccccccccccCccccCCCCC-CcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCCCCCccccchh
Q 001384 961 GDSHVSTTIAGTVGYVAPEYGQTWQA-TTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRHGPGRAVIPVV 1039 (1088)
Q Consensus 961 ~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1039 (1088)
. ......+||+.|+|||++.+..| +.++||||+||++|||+||+.||.+.... +....+.....
T Consensus 165 ~--~~~~~~~GT~~Y~APE~~~~~~y~~~~~DiwSlGvily~lltg~~PF~~~~~~--~~~~~i~~~~~----------- 229 (275)
T 3hyh_A 165 G--NFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESIP--VLFKNISNGVY----------- 229 (275)
T ss_dssp ------------CTTSCHHHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHHTCC-----------
T ss_pred C--CccCCeeECcccCChhhhcCCCCCCChhhhHHHHHHHHHHHHCCCCCCCCCHH--HHHHHHHcCCC-----------
Confidence 2 23345789999999999988776 57999999999999999999999875432 22222221100
Q ss_pred hcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1040 LLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1040 ~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
..+.....++.+++.+|++.||++|||++|+++
T Consensus 230 ------~~p~~~s~~~~~li~~~L~~dP~~R~s~~eil~ 262 (275)
T 3hyh_A 230 ------TLPKFLSPGAAGLIKRMLIVNPLNRISIHEIMQ 262 (275)
T ss_dssp ------CCCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred ------CCCCCCCHHHHHHHHHHccCChhHCcCHHHHHc
Confidence 001122356788999999999999999999986
No 23
>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}
Probab=100.00 E-value=1.8e-47 Score=417.64 Aligned_cols=244 Identities=28% Similarity=0.450 Sum_probs=198.8
Q ss_pred CccceecccCceEEEEEEeC-CCcEEEEEEccccCc--cchHHHHHHHHHHhCCCCCCCCCceeEEeeEEec----CCeE
Q 001384 808 SEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGL--EGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLD----GSEK 880 (1088)
Q Consensus 808 ~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~----~~~~ 880 (1088)
++.+.||+|+||+||+|+++ +++.||||++..... ...+.+.+|++++++ ++|||||++++++.+ +...
T Consensus 29 ~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~----l~HpnIV~~~~~~~~~~~~~~~~ 104 (290)
T 3fpq_A 29 KFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKG----LQHPNIVRFYDSWESTVKGKKCI 104 (290)
T ss_dssp EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHT----CCCTTBCCEEEEEEEEETTEEEE
T ss_pred EeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHh----CCCCCCCcEEEEEeeccCCCcEE
Confidence 56678999999999999976 688999999976532 234578999999997 689999999999865 3568
Q ss_pred EEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCC--eEecCCCCCCEEEcC-CCCEEEeeccccee
Q 001384 881 ILVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPP--IVHRDVKASNVLLDK-EGKALVTDFGLARV 957 (1088)
Q Consensus 881 ~lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~--ivH~DLkp~NIll~~-~~~~kl~Dfg~a~~ 957 (1088)
|+|||||+||+|.+++++...+++..++.|+.||+.||+|||++ + ||||||||+|||++. ++.+||+|||+|+.
T Consensus 105 ~lvmEy~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~ylH~~---~~~IiHRDlKp~NILl~~~~g~vKl~DFGla~~ 181 (290)
T 3fpq_A 105 VLVTELMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLHTR---TPPIIHRDLKCDNIFITGPTGSVKIGDLGLATL 181 (290)
T ss_dssp EEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTS---SSCCCCCCCCGGGEEESSTTSCEEECCTTGGGG
T ss_pred EEEEeCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CCCEEecccChhheeEECCCCCEEEEeCcCCEe
Confidence 99999999999999999988999999999999999999999998 6 999999999999984 79999999999975
Q ss_pred ecCCCCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCCCCCccccc
Q 001384 958 VSAGDSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRHGPGRAVIP 1037 (1088)
Q Consensus 958 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1037 (1088)
.. .......+||+.|||||++.+ .|+.++|||||||++|||+||+.||.+..... ........... +
T Consensus 182 ~~---~~~~~~~~GTp~YmAPE~~~~-~y~~~~DiwSlGvilyelltg~~Pf~~~~~~~-~~~~~i~~~~~--------~ 248 (290)
T 3fpq_A 182 KR---ASFAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQNAA-QIYRRVTSGVK--------P 248 (290)
T ss_dssp CC---TTSBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHH-HHHHHHTTTCC--------C
T ss_pred CC---CCccCCcccCccccCHHHcCC-CCCcHHHHHHHHHHHHHHHHCCCCCCCCCcHH-HHHHHHHcCCC--------C
Confidence 43 223456789999999998875 69999999999999999999999997654322 22222211000 0
Q ss_pred hhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1038 VVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1038 ~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
... +.....++.+++.+||+.||++|||++|+++
T Consensus 249 ~~~-------~~~~~~~~~~li~~~L~~dP~~R~s~~e~l~ 282 (290)
T 3fpq_A 249 ASF-------DKVAIPEVKEIIEGCIRQNKDERYSIKDLLN 282 (290)
T ss_dssp GGG-------GGCCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred CCC-------CccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 000 1112346788999999999999999999975
No 24
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=100.00 E-value=2.4e-47 Score=435.15 Aligned_cols=249 Identities=25% Similarity=0.388 Sum_probs=210.7
Q ss_pred CCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeEEEE
Q 001384 805 GKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGLEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEKILV 883 (1088)
Q Consensus 805 ~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~~lv 883 (1088)
+.|++.+.||+|+||+||+|+++ +|+.||||++........+.+.+|+++++. ++|||||++++++.+++..|+|
T Consensus 151 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~----l~HpnIV~l~~~~~~~~~~~iV 226 (423)
T 4fie_A 151 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRD----YQHENVVEMYNSYLVGDELWVV 226 (423)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHH----CCCTTBCCEEEEEEETTEEEEE
T ss_pred HhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHh----CCCCCCCceEEEEEECCEEEEE
Confidence 56999999999999999999976 699999999987666666778999999997 6799999999999999999999
Q ss_pred EEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccceeecCCCC
Q 001384 884 YEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARVVSAGDS 963 (1088)
Q Consensus 884 ~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~~~~~~ 963 (1088)
||||+||+|.++++. .++++.+++.|+.||+.||+|||++ +||||||||+|||++.+|.+||+|||+|+.+....
T Consensus 227 mEy~~gG~L~~~i~~-~~l~e~~~~~~~~qil~aL~ylH~~---~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~- 301 (423)
T 4fie_A 227 MEFLEGGALTDIVTH-TRMNEEQIAAVCLAVLQALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEV- 301 (423)
T ss_dssp EECCTTEEHHHHHHH-SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSTTTEEECTTCCEEECCCTTCEECCSSC-
T ss_pred EeCCCCCcHHHHHhc-cCCCHHHHHHHHHHHHHHHHHHHHC---CeecccCCHHHEEEcCCCCEEEecCccceECCCCC-
Confidence 999999999999965 4699999999999999999999999 99999999999999999999999999998875432
Q ss_pred cccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCCCCCccccchhhcCC
Q 001384 964 HVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRHGPGRAVIPVVLLGS 1043 (1088)
Q Consensus 964 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1043 (1088)
......+||+.|||||++.+..|+.++||||+||++|||++|+.||.+...... ...+..... ..
T Consensus 302 ~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~--~~~i~~~~~-~~------------ 366 (423)
T 4fie_A 302 PRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKA--MKMIRDNLP-PR------------ 366 (423)
T ss_dssp CCBCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHH--HHHHHHSCC-CC------------
T ss_pred ccccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHH--HHHHHcCCC-CC------------
Confidence 234567899999999999999999999999999999999999999987654211 111110000 00
Q ss_pred CccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1044 GLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1044 ~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
.........++.+|+.+||+.||++||+++|+++
T Consensus 367 -~~~~~~~s~~~~dli~~~L~~dP~~R~ta~ell~ 400 (423)
T 4fie_A 367 -LKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLK 400 (423)
T ss_dssp -CSCTTSSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred -CcccccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 0011223457888999999999999999999876
No 25
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=100.00 E-value=4.7e-48 Score=435.13 Aligned_cols=264 Identities=26% Similarity=0.387 Sum_probs=214.6
Q ss_pred HHHHHcCCCCccceecccCceEEEEEEeCC------CcEEEEEEccccCcc-chHHHHHHHHHHhCCCCCCCCCceeEEe
Q 001384 799 DILKATGKFSEDRIIGKGGFGTVYRGVLPD------GREVAVKKLQREGLE-GEREFRAEMEVLSGNGFGWPHPNLVTLY 871 (1088)
Q Consensus 799 ~~~~~~~~~~~~~~LG~G~~g~Vy~~~~~~------~~~vavK~~~~~~~~-~~~~~~~E~~~l~~~~~~l~h~niv~l~ 871 (1088)
++....++|++.+.||+|+||+||+|++.. ++.||||++...... ..+.+.+|++++.++. +|||||+++
T Consensus 58 ~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~---hhpnIV~l~ 134 (353)
T 4ase_A 58 KWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIG---HHLNVVNLL 134 (353)
T ss_dssp HHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHC---CCTTBCCEE
T ss_pred ccEecHHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHHHHcC---CCCcEEEEE
Confidence 333445789999999999999999998642 367999999875433 3457899999998743 569999999
Q ss_pred eEEecC-CeEEEEEEecCCCCHHHHHhhc----------------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCC
Q 001384 872 GWCLDG-SEKILVYEYMEGGSLEDIISDR----------------TRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDV 934 (1088)
Q Consensus 872 ~~~~~~-~~~~lv~e~~~~gsL~~~l~~~----------------~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DL 934 (1088)
++|.++ ...++|||||++|+|.++++.. ..+++.++..|+.|||+||+|||++ +||||||
T Consensus 135 g~~~~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~---~iiHRDL 211 (353)
T 4ase_A 135 GACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIHRDL 211 (353)
T ss_dssp EEECCTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHT---TCCCSCC
T ss_pred EEEEecCCEEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHhhC---CeecCcc
Confidence 998764 5789999999999999999753 2489999999999999999999999 9999999
Q ss_pred CCCCEEEcCCCCEEEeecccceeecCCCCc-ccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHh-CCcCCCCC
Q 001384 935 KASNVLLDKEGKALVTDFGLARVVSAGDSH-VSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELAT-GRRALEGG 1012 (1088)
Q Consensus 935 kp~NIll~~~~~~kl~Dfg~a~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~ellt-g~~p~~~~ 1012 (1088)
||+|||+++++.+||+|||+|+.+...... ......||+.|||||++.+..|+.++|||||||++|||+| |+.||.+.
T Consensus 212 K~~NILl~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~ 291 (353)
T 4ase_A 212 AARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGV 291 (353)
T ss_dssp SGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTC
T ss_pred CccceeeCCCCCEEECcchhhhhcccCCCceeeccccccccccCHHHHhcCCCCCcccEeehHHHHHHHHhCCCCCCCCC
Confidence 999999999999999999999876544332 3445689999999999999999999999999999999998 99999875
Q ss_pred chhHHHHHHhhhccCCCCCCccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhhCC
Q 001384 1013 EECLVEWGRRVMGYGRHGPGRAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKILP 1085 (1088)
Q Consensus 1013 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i~~ 1085 (1088)
.... ....... .+.....+..++.++.+++.+||+.||++|||++||++.|+++++
T Consensus 292 ~~~~-~~~~~i~----------------~g~~~~~p~~~~~~~~~li~~c~~~dP~~RPt~~eil~~L~~llq 347 (353)
T 4ase_A 292 KIDE-EFCRRLK----------------EGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQ 347 (353)
T ss_dssp CCSH-HHHHHHH----------------HTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred CHHH-HHHHHHH----------------cCCCCCCCccCCHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHHH
Confidence 3211 1111111 111112233445678899999999999999999999999999875
No 26
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.6e-46 Score=454.59 Aligned_cols=494 Identities=21% Similarity=0.197 Sum_probs=335.3
Q ss_pred ccCCeeeCCCCCCCCCcCccCCCCCCCcEEECccccccCcc--cCCCCCCCceeecccccccccccCchhhhcccceEEe
Q 001384 103 TQLSYLDLSRNTFSGSIPDDLSSCRSLKYLNLSHNILSGDL--NLSGLRSLEILDLSVNRIHGEISFSFPAICEKLVVAN 180 (1088)
Q Consensus 103 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~ 180 (1088)
+++++|||++|.+++..+..|.++++|++|+|++|.+++.. .+.++++|++|+|++|++++..+..|. .+++|++|+
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~ 106 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS-GLSSLQKLV 106 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT-TCTTCCEEE
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhc-Ccccccccc
Confidence 57899999999999887889999999999999999988653 488889999999999888865555443 357777777
Q ss_pred ccCccCCCCCCccccCCCCCcEEEccCccccccccccCcccceecccCcccccccccccccCCCccCEEEcCCCcccccC
Q 001384 181 LSLNNLTGRIDTCFDGCLNLRYLDLSSNNFRGNIWNGLAQLVEFSVSENVLSGVVSSSVFKENCSLEIFDLSENEFIGDF 260 (1088)
Q Consensus 181 L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 260 (1088)
+++|++++..+..++++++|++|++++|.+++ .-.+..|..+++|++|++++|++++..
T Consensus 107 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~---------------------~~lp~~~~~l~~L~~L~l~~n~l~~~~ 165 (570)
T 2z63_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQS---------------------FKLPEYFSNLTNLEHLDLSSNKIQSIY 165 (570)
T ss_dssp CTTSCCCCSTTCSCTTCTTCCEEECCSSCCCC---------------------CCCCGGGGGCTTCCEEECTTSCCCEEC
T ss_pred ccccccccCCCccccccccccEEecCCCccce---------------------ecChhhhcccCCCCEEeCcCCccceec
Confidence 77777777766667777777777777776653 111334566778888999988888877
Q ss_pred cccccCCCCC----cEEEccCccccCCCccccCCCCCCCEEeCCCCcCC-ccCcccccCCCCCcEEEcCCCcC------C
Q 001384 261 PGEVSNCRNL----VVLNLFGNNFSGPIPAEIGSISGLEALFLGKNNFL-SVIPESLLNLSKLEVLDLSSNNF------G 329 (1088)
Q Consensus 261 p~~l~~l~~L----~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~-~~~p~~l~~l~~L~~L~L~~N~l------~ 329 (1088)
|..++.+++| +.|++++|.+++..|..+... +|+.|++++|... ..++..+..+++++.+.+..+.+ .
T Consensus 166 ~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~ 244 (570)
T 2z63_A 166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 244 (570)
T ss_dssp GGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCE
T ss_pred HHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhh
Confidence 8888888888 788898888887777666655 7888888877432 12344455555555444332211 1
Q ss_pred CchhHhhhcccc--cceeecCcCcccCCCCCccccCCCCcCEEEccCCccCCCCCccccCCcCcceeeccccccCCcCCc
Q 001384 330 GEVQKIFGRFTQ--VKILALHSNSYIDGMNSSGILKLPNISRLDLSHNNFTGPLPVEISQMRSLKFLILAHNRFNGSIPA 407 (1088)
Q Consensus 330 ~~~~~~~~~l~~--L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~ 407 (1088)
......|..+.+ ++.+++..+.......+..+..+++|+.|++++|.++ .+|..+..+ +|+.|++++|.+. .+|.
T Consensus 245 ~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~ 321 (570)
T 2z63_A 245 KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT 321 (570)
T ss_dssp ECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB
T ss_pred hcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc
Confidence 111222222222 2333344442223333444555566666666666665 455555555 6666666666665 4443
Q ss_pred ccCCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEccccccccCC--CccccCCCCCCeEEccCCcCccCCCchhhccC
Q 001384 408 VYGNMPNLQTLDLSFNELTGPIPPSIGNLTSLLWLMLANNSLSGEI--PGEIGNCTSLLWLNLSNNKLSGNIPPEVMTIG 485 (1088)
Q Consensus 408 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~--p~~l~~l~~L~~L~L~~N~l~g~ip~~~~~~~ 485 (1088)
..+++|+.|++++|.+.+.++. ..+++|++|++++|++++.. |..+.++++|++|++++|++++ +|..+..+.
T Consensus 322 --~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~l~ 396 (570)
T 2z63_A 322 --LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLE 396 (570)
T ss_dssp --CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEE-EEEEEETCT
T ss_pred --ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccc-ccccccccC
Confidence 3455666666666665544443 45566666666666665432 4555566666666666666553 333344444
Q ss_pred CCCCccccccccCCcccccCCccccccccccCCCCCCCcceeeehhccccchhhhhcccCCcccccccCCCcccceeeec
Q 001384 486 RNARPTFEANQRNGERTIAGSSECLSMKRWIPADYPPFSFVYTILTRKSCRSLWDRLLKGTGIFPVCLPGLASRTFQITG 565 (1088)
Q Consensus 486 ~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~l~ 565 (1088)
++..+.+..|...+... ......+..++
T Consensus 397 ~L~~L~l~~n~l~~~~~----------------------------------------------------~~~~~~l~~L~ 424 (570)
T 2z63_A 397 QLEHLDFQHSNLKQMSE----------------------------------------------------FSVFLSLRNLI 424 (570)
T ss_dssp TCCEEECTTSEEESCTT----------------------------------------------------SCTTTTCTTCC
T ss_pred CCCEEEccCCccccccc----------------------------------------------------hhhhhcCCCCC
Confidence 44444444433221100 00001123457
Q ss_pred eEEccCCccccccCcccccCCCccEEeccccccc-cCCCCcccCc-cceEEEccCCcccccCCccccCCccCcEEEcccc
Q 001384 566 YLQLSGNQLSGELSPDIGKLQNFSMVHLGFNQFD-GKLPSQFDQL-PLIVLNLTRNNFSGEIPSEFGNIKCLQNLDLSYN 643 (1088)
Q Consensus 566 ~L~l~~N~l~g~~p~~~~~l~~L~~L~l~~N~l~-g~~p~~~~~l-~l~~l~l~~N~l~~~~p~~~~~l~~L~~L~l~~N 643 (1088)
+|++++|++++.+|..++.+++|+.|++++|+++ +.+|..++.+ .|++|+|++|++++..|..|+++++|+.|+|++|
T Consensus 425 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 504 (570)
T 2z63_A 425 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN 504 (570)
T ss_dssp EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCC
Confidence 8999999999999999999999999999999997 6799999888 6999999999999888999999999999999999
Q ss_pred ccCCcCCcccccccccceeeccCCCCccccCCCCCcc
Q 001384 644 NFSGPFPASFNNLTELSKLNISYNPLVSGTIPSTGQL 680 (1088)
Q Consensus 644 ~l~g~~p~~~~~l~~L~~l~l~~N~l~~g~ip~~~~~ 680 (1088)
++++.+|..+.++++|+.|++++|++ .+.+|....+
T Consensus 505 ~l~~~~~~~~~~l~~L~~L~l~~N~~-~~~~~~~~~~ 540 (570)
T 2z63_A 505 QLKSVPDGIFDRLTSLQKIWLHTNPW-DCSCPRIDYL 540 (570)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCB-CCCTTTTHHH
T ss_pred cCCCCCHHHhhcccCCcEEEecCCcc-cCCCcchHHH
Confidence 99988888899999999999999999 6777765433
No 27
>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*
Probab=100.00 E-value=1.2e-47 Score=421.00 Aligned_cols=242 Identities=26% Similarity=0.324 Sum_probs=196.3
Q ss_pred CCCCccceecccCceEEEEEEeC----CCcEEEEEEccccCc--cchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCC
Q 001384 805 GKFSEDRIIGKGGFGTVYRGVLP----DGREVAVKKLQREGL--EGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGS 878 (1088)
Q Consensus 805 ~~~~~~~~LG~G~~g~Vy~~~~~----~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~ 878 (1088)
++|++.+.||+|+||+||+|+.. +++.||||++.+... .....+.+|++++++ ++|||||++++++.+++
T Consensus 24 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~----l~HpnIv~l~~~~~~~~ 99 (304)
T 3ubd_A 24 SQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVE----VNHPFIVKLHYAFQTEG 99 (304)
T ss_dssp GGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCC----CCCTTEECEEEEEEETT
T ss_pred cccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHH----CCCCCCCeEEEEEEECC
Confidence 46999999999999999999863 468899999976532 223467889888876 78999999999999999
Q ss_pred eEEEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccceee
Q 001384 879 EKILVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARVV 958 (1088)
Q Consensus 879 ~~~lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~ 958 (1088)
..|+|||||+||+|.+++++.+.+++.+++.++.||+.||+|||++ +||||||||+|||+++++.+||+|||+|+..
T Consensus 100 ~~~ivmEy~~gg~L~~~l~~~~~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~DFGla~~~ 176 (304)
T 3ubd_A 100 KLYLILDFLRGGDLFTRLSKEVMFTEEDVKFYLAELALALDHLHSL---GIIYRDLKPENILLDEEGHIKLTDFGLSKES 176 (304)
T ss_dssp EEEEEECCCTTCEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCCGGGEEECTTSCEEEESSEEEEC-
T ss_pred EEEEEEEcCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCCCHHHeEEcCCCCEEecccccceec
Confidence 9999999999999999999988999999999999999999999999 9999999999999999999999999999865
Q ss_pred cCCCCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCCCCCccccch
Q 001384 959 SAGDSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRHGPGRAVIPV 1038 (1088)
Q Consensus 959 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1038 (1088)
.... ......+||+.|||||++.+..|+.++||||+||++|||+||+.||.+.+... ....+.....
T Consensus 177 ~~~~-~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~~--~~~~i~~~~~---------- 243 (304)
T 3ubd_A 177 IDHE-KKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGKDRKE--TMTMILKAKL---------- 243 (304)
T ss_dssp -----CCCCSCCCCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH--HHHHHHHCCC----------
T ss_pred cCCC-ccccccccCcccCCHHHhccCCCCCCCcccchHHHHHHHHhCCCCCCCcCHHH--HHHHHHcCCC----------
Confidence 4322 23445789999999999999999999999999999999999999998765422 2222221000
Q ss_pred hhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCH
Q 001384 1039 VLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNV 1073 (1088)
Q Consensus 1039 ~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~ 1073 (1088)
..+...+.++.+++.+||+.||++||++
T Consensus 244 -------~~p~~~s~~~~~li~~~L~~dP~~R~ta 271 (304)
T 3ubd_A 244 -------GMPQFLSPEAQSLLRMLFKRNPANRLGA 271 (304)
T ss_dssp -------CCCTTSCHHHHHHHHHHTCSSGGGSTTC
T ss_pred -------CCCCcCCHHHHHHHHHHcccCHHHCCCC
Confidence 0112234568889999999999999985
No 28
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=100.00 E-value=1.3e-46 Score=417.50 Aligned_cols=264 Identities=28% Similarity=0.375 Sum_probs=200.6
Q ss_pred CCCccceecccCceEEEEEEeCCCcEEEEEEccccCccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCC----eEE
Q 001384 806 KFSEDRIIGKGGFGTVYRGVLPDGREVAVKKLQREGLEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGS----EKI 881 (1088)
Q Consensus 806 ~~~~~~~LG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~----~~~ 881 (1088)
+|.+.+.||+|+||+||+|++ +|+.||||++... ..+++..|.++.... .++|||||++++++.+++ ..|
T Consensus 4 ~i~L~~~iG~G~fG~Vy~~~~-~g~~VAvK~l~~~---~~~~~~~e~Ei~~~~--~l~HpNIv~l~g~~~~~~~~~~~~~ 77 (303)
T 3hmm_A 4 TIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSR---EERSWFREAEIYQTV--MLRHENILGFIAADNKDNGTWTQLW 77 (303)
T ss_dssp GEEEEEEEEECSSSEEEEEEE-TTEEEEEEEECGG---GHHHHHHHHHHHTST--TCCCTTBCCEEEEEEEECSSSEEEE
T ss_pred EEEEEEEEeeCCCeEEEEEEE-CCEEEEEEEECcc---chhhHHHHHHHHHHh--cCCCCCCCcEEEEEEecCCCceEEE
Confidence 467789999999999999998 5899999999754 234444555554332 278999999999998653 579
Q ss_pred EEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcC-----CCCeEecCCCCCCEEEcCCCCEEEeecccce
Q 001384 882 LVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHEC-----YPPIVHRDVKASNVLLDKEGKALVTDFGLAR 956 (1088)
Q Consensus 882 lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~-----~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~ 956 (1088)
+|||||++|+|.++++.. +++|.++.+++.|++.||+|||+++ .++||||||||+|||++.++.+||+|||+|+
T Consensus 78 lV~Ey~~~gsL~~~l~~~-~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~ 156 (303)
T 3hmm_A 78 LVSDYHEHGSLFDYLNRY-TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAV 156 (303)
T ss_dssp EEEECCTTCBHHHHHHHC-CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCE
T ss_pred EEecCCCCCcHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCCCEEEEeCCCCc
Confidence 999999999999999765 5899999999999999999999862 3589999999999999999999999999998
Q ss_pred eecCCCCc---ccccccccccccCccccCCC------CCCcchhHHHHHHHHHHHHhCCcCCCCCch-------------
Q 001384 957 VVSAGDSH---VSTTIAGTVGYVAPEYGQTW------QATTKGDVYSFGVLAMELATGRRALEGGEE------------- 1014 (1088)
Q Consensus 957 ~~~~~~~~---~~~~~~gt~~y~aPE~~~~~------~~~~~~DvwslG~~l~elltg~~p~~~~~~------------- 1014 (1088)
........ ......||+.|||||++.+. .++.++|||||||++|||+||+.||....+
T Consensus 157 ~~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~~~~~~~~~ 236 (303)
T 3hmm_A 157 RHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDP 236 (303)
T ss_dssp EEETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSC
T ss_pred cccCCCCceeeecccccccccccCHHHhcccccccCCccChhHhhhhHHHHHHHHHHCCCCCCccccccccchhcccccc
Confidence 87654322 22346799999999988654 467899999999999999999887754321
Q ss_pred hHHHHHHhhhccCCCCCCccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhhCCC
Q 001384 1015 CLVEWGRRVMGYGRHGPGRAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKILPH 1086 (1088)
Q Consensus 1015 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i~~~ 1086 (1088)
...+.......... +-.++ ......+....+.+++.+||+.||++||||+||++.|+++.++
T Consensus 237 ~~~~~~~~~~~~~~----rp~~p------~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~l~~~ 298 (303)
T 3hmm_A 237 SVEEMRKVVCEQKL----RPNIP------NRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQ 298 (303)
T ss_dssp CHHHHHHHHTTSCC----CCCCC------GGGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHhcccC----CCCCC------ccccchHHHHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHHHH
Confidence 01111111110000 00000 0011335667899999999999999999999999999998643
No 29
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.5e-45 Score=448.81 Aligned_cols=484 Identities=22% Similarity=0.231 Sum_probs=384.5
Q ss_pred ceeEEeccccccccccccccccCCccCCeeeCCCCCCCCCcCccCCCCCCCcEEECccccccCcc--cCCCCCCCceeec
Q 001384 79 ARVNGLNLTDWNISGDIFNNFSALTQLSYLDLSRNTFSGSIPDDLSSCRSLKYLNLSHNILSGDL--NLSGLRSLEILDL 156 (1088)
Q Consensus 79 ~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L 156 (1088)
.+++.|+|+++.+++..+.+|.++++|++|||++|++++..|..|+++++|++|+|++|.+++.. .+.++++|++|+|
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 46889999999999988889999999999999999999888889999999999999999998753 6999999999999
Q ss_pred ccccccccccCchhhhcccceEEeccCccCCCC-CCccccCCCCCcEEEccCcccccccc---ccCccc----ceecccC
Q 001384 157 SVNRIHGEISFSFPAICEKLVVANLSLNNLTGR-IDTCFDGCLNLRYLDLSSNNFRGNIW---NGLAQL----VEFSVSE 228 (1088)
Q Consensus 157 s~N~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~Ls~N~l~~~~~---~~l~~L----~~L~L~~ 228 (1088)
++|++++..+..+ ..+++|++|+|++|++++. +|..|.++++|++|++++|++++..+ ..+.+| +.|++++
T Consensus 108 ~~n~l~~l~~~~~-~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~ 186 (570)
T 2z63_A 108 VETNLASLENFPI-GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (570)
T ss_dssp TTSCCCCSTTCSC-TTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred cccccccCCCccc-cccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCC
Confidence 9999997665554 4578999999999999984 69999999999999999999987443 345566 6788888
Q ss_pred cccccccccccccCCCccCEEEcCCCccc-ccCcccccCCCCCcEEEccCccccC------CCccccCCCC--CCCEEeC
Q 001384 229 NVLSGVVSSSVFKENCSLEIFDLSENEFI-GDFPGEVSNCRNLVVLNLFGNNFSG------PIPAEIGSIS--GLEALFL 299 (1088)
Q Consensus 229 n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~L~~N~l~~------~~p~~~~~l~--~L~~L~L 299 (1088)
|.+++.. +..|... +|+.|++++|... ..++..+..+++++.+.+..+.+.. .....+..+. .++.+++
T Consensus 187 n~l~~~~-~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l 264 (570)
T 2z63_A 187 NPMNFIQ-PGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264 (570)
T ss_dssp CCCCEEC-TTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEE
T ss_pred CCceecC-HHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhh
Confidence 8888643 4555554 7888888887533 2345566677777766654433221 1112222222 2456666
Q ss_pred CCC-cCCccCcccccCCCCCcEEEcCCCcCCCchhHhhhcccccceeecCcCcccCCCCCccccCCCCcCEEEccCCccC
Q 001384 300 GKN-NFLSVIPESLLNLSKLEVLDLSSNNFGGEVQKIFGRFTQVKILALHSNSYIDGMNSSGILKLPNISRLDLSHNNFT 378 (1088)
Q Consensus 300 ~~N-~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 378 (1088)
++| .+.+.+|..+..+++|++|++++|.+++ +|..+..+ +|+.|++++|.+. .++. ..+++|+.|++++|.+.
T Consensus 265 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~~-~L~~L~l~~n~~~-~l~~---~~l~~L~~L~l~~n~~~ 338 (570)
T 2z63_A 265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNF-GWQHLELVNCKFG-QFPT---LKLKSLKRLTFTSNKGG 338 (570)
T ss_dssp EETTEEESCSTTTTGGGTTCSEEEEESCEECS-CCBCCSCC-CCSEEEEESCBCS-SCCB---CBCSSCCEEEEESCBSC
T ss_pred hcchhhhhhchhhhcCcCcccEEEecCccchh-hhhhhccC-CccEEeeccCccc-ccCc---ccccccCEEeCcCCccc
Confidence 666 6667777778888888888888888774 55556666 8888888887754 2222 36788888999988888
Q ss_pred CCCCccccCCcCcceeeccccccCCcC--CcccCCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEccccccccCCC-c
Q 001384 379 GPLPVEISQMRSLKFLILAHNRFNGSI--PAVYGNMPNLQTLDLSFNELTGPIPPSIGNLTSLLWLMLANNSLSGEIP-G 455 (1088)
Q Consensus 379 ~~~p~~l~~l~~L~~L~L~~N~l~~~~--p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~ 455 (1088)
+..+. ..+++|++|++++|++++.. |..+..+++|++|++++|++++ +|..+..+++|++|++++|++++..| .
T Consensus 339 ~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 415 (570)
T 2z63_A 339 NAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFS 415 (570)
T ss_dssp CBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESCTTSC
T ss_pred ccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccc-ccccccccCCCCEEEccCCccccccchh
Confidence 66554 67888999999999888543 6778888899999999998884 55558888899999999999887665 4
Q ss_pred cccCCCCCCeEEccCCcCccCCCchhhccCCCCCccccccccCCcccccCCccccccccccCCCCCCCcceeeehhcccc
Q 001384 456 EIGNCTSLLWLNLSNNKLSGNIPPEVMTIGRNARPTFEANQRNGERTIAGSSECLSMKRWIPADYPPFSFVYTILTRKSC 535 (1088)
Q Consensus 456 ~l~~l~~L~~L~L~~N~l~g~ip~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (1088)
.+.++++|++|++++|++++.+|..+..+
T Consensus 416 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l--------------------------------------------------- 444 (570)
T 2z63_A 416 VFLSLRNLIYLDISHTHTRVAFNGIFNGL--------------------------------------------------- 444 (570)
T ss_dssp TTTTCTTCCEEECTTSCCEECCTTTTTTC---------------------------------------------------
T ss_pred hhhcCCCCCEEeCcCCcccccchhhhhcC---------------------------------------------------
Confidence 68888999999999998886655443221
Q ss_pred chhhhhcccCCcccccccCCCcccceeeeceEEccCCccc-cccCcccccCCCccEEeccccccccCCCCcccCc-cceE
Q 001384 536 RSLWDRLLKGTGIFPVCLPGLASRTFQITGYLQLSGNQLS-GELSPDIGKLQNFSMVHLGFNQFDGKLPSQFDQL-PLIV 613 (1088)
Q Consensus 536 ~~l~~~~~~~~~~~~~~l~~~~~~~~~~l~~L~l~~N~l~-g~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~l-~l~~ 613 (1088)
..+++|++++|+++ +.+|..++.+++|+.|++++|++++..|..++.+ .|++
T Consensus 445 --------------------------~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 498 (570)
T 2z63_A 445 --------------------------SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 498 (570)
T ss_dssp --------------------------TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred --------------------------CcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCE
Confidence 13467999999998 6899999999999999999999999889999988 6999
Q ss_pred EEccCCcccccCCccccCCccCcEEEccccccCCcCCc
Q 001384 614 LNLTRNNFSGEIPSEFGNIKCLQNLDLSYNNFSGPFPA 651 (1088)
Q Consensus 614 l~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~ 651 (1088)
|+|++|++++..|..|.++++|+.|+|++|++++..|.
T Consensus 499 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 499 LNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred EeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 99999999988888899999999999999999988775
No 30
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=4.1e-46 Score=458.84 Aligned_cols=446 Identities=17% Similarity=0.245 Sum_probs=356.8
Q ss_pred CCceeecccccccccccCchhhhcccceEEeccCccC------CC------CCCccccCCCCCcEEEccCcccccccccc
Q 001384 150 SLEILDLSVNRIHGEISFSFPAICEKLVVANLSLNNL------TG------RIDTCFDGCLNLRYLDLSSNNFRGNIWNG 217 (1088)
Q Consensus 150 ~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~L~~n~l------~~------~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~ 217 (1088)
.++.|+|++|.++|.+|.++. .++.|++|+|++|.+ .+ .+|... +.+|+ +++++|.+.+.++..
T Consensus 82 ~V~~L~L~~~~l~g~lp~~l~-~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~ 157 (636)
T 4eco_A 82 RVTGLSLEGFGASGRVPDAIG-QLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRED 157 (636)
T ss_dssp CEEEEECTTSCCEEEECGGGG-GCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGG
T ss_pred CEEEEEecCcccCCcCChHHh-cCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhh
Confidence 566777777777766665543 345666666666654 11 122211 33444 555555555544443
Q ss_pred Ccc----cceecccCcccccccccccccCCCccCEEEcC--CCcccccCcccccCCCCCcEEEccCccccCC--------
Q 001384 218 LAQ----LVEFSVSENVLSGVVSSSVFKENCSLEIFDLS--ENEFIGDFPGEVSNCRNLVVLNLFGNNFSGP-------- 283 (1088)
Q Consensus 218 l~~----L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls--~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~-------- 283 (1088)
+.. +..+++....+.. .....++.+.+. .|++++ +|..++++++|++|+|++|++++.
T Consensus 158 ~~~~~~~l~~~~l~~~~~~~-------~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 229 (636)
T 4eco_A 158 FSDLIKDCINSDPQQKSIKK-------SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWEN 229 (636)
T ss_dssp SCHHHHHHHHHCTTSCCCCC-------CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSC
T ss_pred HHHHHHHHhhcCcccccccc-------ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccc
Confidence 331 1222222111110 111123333333 688998 899999999999999999999985
Q ss_pred ---------CccccC--CCCCCCEEeCCCCcCCccCcccccCCCCCcEEEcCCCc-CCC-chhHhhhcc------cccce
Q 001384 284 ---------IPAEIG--SISGLEALFLGKNNFLSVIPESLLNLSKLEVLDLSSNN-FGG-EVQKIFGRF------TQVKI 344 (1088)
Q Consensus 284 ---------~p~~~~--~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~-l~~-~~~~~~~~l------~~L~~ 344 (1088)
+|..++ ++++|++|+|++|++.+.+|..++++++|++|+|++|+ +++ .+|..++.+ ++|+.
T Consensus 230 ~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~ 309 (636)
T 4eco_A 230 ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQI 309 (636)
T ss_dssp TTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCE
T ss_pred cccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCE
Confidence 999999 99999999999999999999999999999999999998 998 889888887 99999
Q ss_pred eecCcCcccCCCCCc--cccCCCCcCEEEccCCccCCCCCccccCCcCcceeeccccccCCcCCcccCCCCC-CcEEEcc
Q 001384 345 LALHSNSYIDGMNSS--GILKLPNISRLDLSHNNFTGPLPVEISQMRSLKFLILAHNRFNGSIPAVYGNMPN-LQTLDLS 421 (1088)
Q Consensus 345 L~L~~n~~~~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~-L~~L~L~ 421 (1088)
|++++|.+. . .+. .+.++++|++|+|++|+++|.+| .++.+++|++|++++|+++ .+|..++.+++ |++|+++
T Consensus 310 L~L~~n~l~-~-ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls 385 (636)
T 4eco_A 310 IYIGYNNLK-T-FPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFA 385 (636)
T ss_dssp EECCSSCCS-S-CCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECC
T ss_pred EECCCCcCC-c-cCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEcc
Confidence 999999976 3 344 78899999999999999999999 9999999999999999999 89999999999 9999999
Q ss_pred CCcCCCCCCccccCCC--CCcEEEccccccccCCCcccc-------CCCCCCeEEccCCcCccCCCchhhccCCCCCccc
Q 001384 422 FNELTGPIPPSIGNLT--SLLWLMLANNSLSGEIPGEIG-------NCTSLLWLNLSNNKLSGNIPPEVMTIGRNARPTF 492 (1088)
Q Consensus 422 ~N~l~~~~p~~~~~l~--~L~~L~L~~N~l~~~~p~~l~-------~l~~L~~L~L~~N~l~g~ip~~~~~~~~~~~~~~ 492 (1088)
+|+++ .+|..++.++ +|++|++++|++++.+|..+. .+++|++|+|++|+++ .+|..++..
T Consensus 386 ~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~-------- 455 (636)
T 4eco_A 386 HNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFST-------- 455 (636)
T ss_dssp SSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHT--------
T ss_pred CCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHcc--------
Confidence 99999 8999888765 899999999999999999998 8889999999999999 677765320
Q ss_pred cccccCCcccccCCccccccccccCCCCCCCcceeeehhccccchhhhhcccCCcccccccCCCcccceeeeceEEccCC
Q 001384 493 EANQRNGERTIAGSSECLSMKRWIPADYPPFSFVYTILTRKSCRSLWDRLLKGTGIFPVCLPGLASRTFQITGYLQLSGN 572 (1088)
Q Consensus 493 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~l~~L~l~~N 572 (1088)
+..+++|+|++|
T Consensus 456 --------------------------------------------------------------------l~~L~~L~Ls~N 467 (636)
T 4eco_A 456 --------------------------------------------------------------------GSPLSSINLMGN 467 (636)
T ss_dssp --------------------------------------------------------------------TCCCSEEECCSS
T ss_pred --------------------------------------------------------------------CCCCCEEECCCC
Confidence 112467999999
Q ss_pred ccccccCcccccC--------CCccEEeccccccccCCCCccc--Cc-cceEEEccCCcccccCCccccCCccCcEEEc-
Q 001384 573 QLSGELSPDIGKL--------QNFSMVHLGFNQFDGKLPSQFD--QL-PLIVLNLTRNNFSGEIPSEFGNIKCLQNLDL- 640 (1088)
Q Consensus 573 ~l~g~~p~~~~~l--------~~L~~L~l~~N~l~g~~p~~~~--~l-~l~~l~l~~N~l~~~~p~~~~~l~~L~~L~l- 640 (1088)
+++ .+|..+... ++|+.|+|++|+++ .+|..+. .+ .|+.|+|++|++++ +|..++++++|+.|+|
T Consensus 468 ~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls 544 (636)
T 4eco_A 468 MLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIR 544 (636)
T ss_dssp CCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECC
T ss_pred CCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECC
Confidence 999 777765443 29999999999999 7888886 66 79999999999997 9999999999999999
Q ss_pred -----cccccCCcCCcccccccccceeeccCCCCccccCCCCCcccccccCccCCCCCCC
Q 001384 641 -----SYNNFSGPFPASFNNLTELSKLNISYNPLVSGTIPSTGQLATFEKTSYLGDPLLD 695 (1088)
Q Consensus 641 -----~~N~l~g~~p~~~~~l~~L~~l~l~~N~l~~g~ip~~~~~~~~~~~~~~~n~~~~ 695 (1088)
++|++.+.+|..++++++|+.|+|++|++ +.||..- ..++....+.+|+..|
T Consensus 545 ~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l--~~ip~~~-~~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 545 NQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI--RKVNEKI-TPNISVLDIKDNPNIS 601 (636)
T ss_dssp SCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC--CBCCSCC-CTTCCEEECCSCTTCE
T ss_pred CCcccccCcccccChHHHhcCCCCCEEECCCCcC--CccCHhH-hCcCCEEECcCCCCcc
Confidence 56889999999999999999999999999 6788752 2566777788998877
No 31
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=7.5e-46 Score=447.82 Aligned_cols=451 Identities=20% Similarity=0.234 Sum_probs=337.0
Q ss_pred EeccccccccccccccccCCccCCeeeCCCCCCCCCcCccCCCCCCCcEEECccccccCc--ccCCCCCCCceeeccccc
Q 001384 83 GLNLTDWNISGDIFNNFSALTQLSYLDLSRNTFSGSIPDDLSSCRSLKYLNLSHNILSGD--LNLSGLRSLEILDLSVNR 160 (1088)
Q Consensus 83 ~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~--~~l~~l~~L~~L~Ls~N~ 160 (1088)
.|++++++|+. +|..+. ++|++|+|++|.+++..|..|.++++|++|+|++|++++. ..+.++++|++|||++|+
T Consensus 4 ~l~ls~n~l~~-ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 80 (520)
T 2z7x_B 4 LVDRSKNGLIH-VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80 (520)
T ss_dssp EEECTTSCCSS-CCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred eEecCCCCccc-cccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence 57899999985 666665 8999999999999988888999999999999999999875 358999999999999999
Q ss_pred ccccccCchhhhcccceEEeccCccCCC-CCCccccCCCCCcEEEccCccccccccccCcccceecccCccccccccccc
Q 001384 161 IHGEISFSFPAICEKLVVANLSLNNLTG-RIDTCFDGCLNLRYLDLSSNNFRGNIWNGLAQLVEFSVSENVLSGVVSSSV 239 (1088)
Q Consensus 161 l~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 239 (1088)
++ .+|.. .+++|++|+|++|++++ .+|..|+++++|++|++++|++++..+..+++|
T Consensus 81 l~-~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L------------------ 138 (520)
T 2z7x_B 81 LV-KISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHL------------------ 138 (520)
T ss_dssp CC-EEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTS------------------
T ss_pred ee-ecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchhhccccccc------------------
Confidence 98 45544 56889999999999987 467889999999999999888875443333333
Q ss_pred ccCCCccCEEEcCCCcc--cccCcccccCCC-CCcEEEccCccccCCCcc-ccCCCCCCCEEeCCCCc-------CCccC
Q 001384 240 FKENCSLEIFDLSENEF--IGDFPGEVSNCR-NLVVLNLFGNNFSGPIPA-EIGSISGLEALFLGKNN-------FLSVI 308 (1088)
Q Consensus 240 ~~~l~~L~~L~Ls~n~l--~~~~p~~l~~l~-~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~L~~N~-------l~~~~ 308 (1088)
+|++|++++|.+ .+..|..+..+. +...+++++|++.+.++. .+..+++|+.|++++|. +.+.+
T Consensus 139 -----~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 213 (520)
T 2z7x_B 139 -----NISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSIL 213 (520)
T ss_dssp -----CEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHH
T ss_pred -----eeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecch
Confidence 125566666665 555566655554 233456666666554443 44556666667666665 44544
Q ss_pred cccccCCCCCcEEEcCCCcCCCchhHhhhcccccceeecCcCcccCCCCCccccCCCCcCEEEccCCccCCCCCccc---
Q 001384 309 PESLLNLSKLEVLDLSSNNFGGEVQKIFGRFTQVKILALHSNSYIDGMNSSGILKLPNISRLDLSHNNFTGPLPVEI--- 385 (1088)
Q Consensus 309 p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l--- 385 (1088)
| .+..+++|+.|++++|.+++..+..+... ...++|++|++++|+++|.+|..+
T Consensus 214 ~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~----------------------~~~~~L~~L~l~~n~l~~~~p~~~~~~ 270 (520)
T 2z7x_B 214 A-KLQTNPKLSNLTLNNIETTWNSFIRILQL----------------------VWHTTVWYFSISNVKLQGQLDFRDFDY 270 (520)
T ss_dssp H-GGGGCTTCCEEEEEEEEEEHHHHHHHHHH----------------------HHTSSCSEEEEEEEEEESCCCCCCCCC
T ss_pred h-hhccccchhhccccccccCHHHHHHHHHH----------------------hhhCcccEEEeecccccCccccchhhc
Confidence 4 56667777777777776654433222100 013478888888888888888877
Q ss_pred --cCCcCcceeeccccccCCcCC-cccCCC---CCCcEEEccCCcCCCCCCccccCCCCCcEEEccccccccCCCccccC
Q 001384 386 --SQMRSLKFLILAHNRFNGSIP-AVYGNM---PNLQTLDLSFNELTGPIPPSIGNLTSLLWLMLANNSLSGEIPGEIGN 459 (1088)
Q Consensus 386 --~~l~~L~~L~L~~N~l~~~~p-~~~~~l---~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~ 459 (1088)
+.+++|+.+++++|.+ .+| ..+..+ .+|+.|++++|++.+ ++ ....+++|++|++++|++++.+|..+++
T Consensus 271 ~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 346 (520)
T 2z7x_B 271 SGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVH-ML-CPSKISPFLHLDFSNNLLTDTVFENCGH 346 (520)
T ss_dssp CSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCC-CC-CCSSCCCCCEEECCSSCCCTTTTTTCCC
T ss_pred ccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccc-cc-chhhCCcccEEEeECCccChhhhhhhcc
Confidence 7888888888888888 455 444444 568888888888764 22 1257788888888888888778888888
Q ss_pred CCCCCeEEccCCcCcc--CCCchhhccCCCCCccccccccCCcccccCCccccccccccCCCCCCCcceeeehhccccch
Q 001384 460 CTSLLWLNLSNNKLSG--NIPPEVMTIGRNARPTFEANQRNGERTIAGSSECLSMKRWIPADYPPFSFVYTILTRKSCRS 537 (1088)
Q Consensus 460 l~~L~~L~L~~N~l~g--~ip~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (1088)
+++|++|+|++|++++ .+|..+..+
T Consensus 347 l~~L~~L~L~~N~l~~l~~~~~~~~~l----------------------------------------------------- 373 (520)
T 2z7x_B 347 LTELETLILQMNQLKELSKIAEMTTQM----------------------------------------------------- 373 (520)
T ss_dssp CSSCCEEECCSSCCCBHHHHHHHHTTC-----------------------------------------------------
T ss_pred CCCCCEEEccCCccCccccchHHHhhC-----------------------------------------------------
Confidence 8888888888888874 333322211
Q ss_pred hhhhcccCCcccccccCCCcccceeeeceEEccCCccccccCcc-cccCCCccEEeccccccccCCCCcccCccceEEEc
Q 001384 538 LWDRLLKGTGIFPVCLPGLASRTFQITGYLQLSGNQLSGELSPD-IGKLQNFSMVHLGFNQFDGKLPSQFDQLPLIVLNL 616 (1088)
Q Consensus 538 l~~~~~~~~~~~~~~l~~~~~~~~~~l~~L~l~~N~l~g~~p~~-~~~l~~L~~L~l~~N~l~g~~p~~~~~l~l~~l~l 616 (1088)
..+++|++++|++++.+|.. +..+++|+.|++++|++++.+|..+. -.|+.|+|
T Consensus 374 ------------------------~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~-~~L~~L~L 428 (520)
T 2z7x_B 374 ------------------------KSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP-PRIKVLDL 428 (520)
T ss_dssp ------------------------TTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC-TTCCEEEC
T ss_pred ------------------------CCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc-ccCCEEEC
Confidence 12457888888888766664 77788999999999999888887765 46889999
Q ss_pred cCCcccccCCccccCCccCcEEEccccccCCcCCcc-cccccccceeeccCCCCc
Q 001384 617 TRNNFSGEIPSEFGNIKCLQNLDLSYNNFSGPFPAS-FNNLTELSKLNISYNPLV 670 (1088)
Q Consensus 617 ~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~-~~~l~~L~~l~l~~N~l~ 670 (1088)
++|+++ .+|..+..+++|+.|+|++|+|+ .+|.. +..+++|+.|++++|++.
T Consensus 429 s~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~ 481 (520)
T 2z7x_B 429 HSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 481 (520)
T ss_dssp CSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCc
Confidence 999999 89999999999999999999999 57776 999999999999999994
No 32
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.9e-45 Score=459.31 Aligned_cols=457 Identities=18% Similarity=0.255 Sum_probs=297.7
Q ss_pred ccCCeeeCCCCCCCCCcCccCCCCCCCcEEEC-ccccccCcccCCCCCC------Cc--eeecc----------cccccc
Q 001384 103 TQLSYLDLSRNTFSGSIPDDLSSCRSLKYLNL-SHNILSGDLNLSGLRS------LE--ILDLS----------VNRIHG 163 (1088)
Q Consensus 103 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L-s~n~l~~~~~l~~l~~------L~--~L~Ls----------~N~l~~ 163 (1088)
.+++.|+|++|.++|.+|++|++|++|++|+| ++|.++|...+..... ++ .+... ...+.+
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 57899999999999999999999999999999 9999987644432111 00 00000 001110
Q ss_pred cccCchh----------hhcccceEEeccC--ccCCCCCCccccCCCCCcEEEccCcccccc-ccccCcccceecccCcc
Q 001384 164 EISFSFP----------AICEKLVVANLSL--NNLTGRIDTCFDGCLNLRYLDLSSNNFRGN-IWNGLAQLVEFSVSENV 230 (1088)
Q Consensus 164 ~~~~~~~----------~~~~~L~~L~L~~--n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~-~~~~l~~L~~L~L~~n~ 230 (1088)
..+..+. .....++.+.+.. |++++ +|..|+++++|++|+|++|++++. ++... +..+.|.
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~-----~~~s~n~ 476 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDW-----EDANSDY 476 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSC-----SCTTSHH
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccc-----ccccccc
Confidence 0000000 0011233344443 78888 788899999999999999998872 22111 1112233
Q ss_pred ccccccccc-ccCCCccCEEEcCCCcccccCcccccCCCCCcEEEccCcc-ccC-CCccccCCCC-------CCCEEeCC
Q 001384 231 LSGVVSSSV-FKENCSLEIFDLSENEFIGDFPGEVSNCRNLVVLNLFGNN-FSG-PIPAEIGSIS-------GLEALFLG 300 (1088)
Q Consensus 231 l~~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~-l~~-~~p~~~~~l~-------~L~~L~L~ 300 (1088)
+++.+|... |..+++|++|+|++|++.+.+|..++++++|++|+|++|+ +++ .+|..++.++ +|+.|+|+
T Consensus 477 ~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls 556 (876)
T 4ecn_A 477 AKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMG 556 (876)
T ss_dssp HHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECC
T ss_pred ccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEee
Confidence 333333332 3345555555555555555555555555555555555554 444 4444333332 45555555
Q ss_pred CCcCCccCcc--cccCCCCCcEEEcCCCcCCCchhHhhhcccccceeecCcCcccCCCCCccccCCCCcCEEEccCCccC
Q 001384 301 KNNFLSVIPE--SLLNLSKLEVLDLSSNNFGGEVQKIFGRFTQVKILALHSNSYIDGMNSSGILKLPNISRLDLSHNNFT 378 (1088)
Q Consensus 301 ~N~l~~~~p~--~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 378 (1088)
+|+++ .+|. .++++++|+.|+|++|.++ .+| .+..+++|+.|+|++|+++
T Consensus 557 ~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp--------------------------~~~~L~~L~~L~Ls~N~l~ 608 (876)
T 4ecn_A 557 YNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE--------------------------AFGTNVKLTDLKLDYNQIE 608 (876)
T ss_dssp SSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC--------------------------CCCTTSEESEEECCSSCCS
T ss_pred CCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch--------------------------hhcCCCcceEEECcCCccc
Confidence 55544 3444 4444555555555554444 222 4566777888888888887
Q ss_pred CCCCccccCCcC-cceeeccccccCCcCCcccCCCCC--CcEEEccCCcCCCCCCcc---cc--CCCCCcEEEccccccc
Q 001384 379 GPLPVEISQMRS-LKFLILAHNRFNGSIPAVYGNMPN--LQTLDLSFNELTGPIPPS---IG--NLTSLLWLMLANNSLS 450 (1088)
Q Consensus 379 ~~~p~~l~~l~~-L~~L~L~~N~l~~~~p~~~~~l~~--L~~L~L~~N~l~~~~p~~---~~--~l~~L~~L~L~~N~l~ 450 (1088)
.+|..+..+++ |+.|+|++|+++ .+|..+..++. |+.|+|++|+++|.+|.. ++ .+++|++|+|++|+++
T Consensus 609 -~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~ 686 (876)
T 4ecn_A 609 -EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ 686 (876)
T ss_dssp -CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC
T ss_pred -cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC
Confidence 77777888887 888888888888 77777776654 888888888887765532 22 3347888888888887
Q ss_pred cCCCcccc-CCCCCCeEEccCCcCccCCCchhhccCCCCCccccccccCCcccccCCccccccccccCCCCCCCcceeee
Q 001384 451 GEIPGEIG-NCTSLLWLNLSNNKLSGNIPPEVMTIGRNARPTFEANQRNGERTIAGSSECLSMKRWIPADYPPFSFVYTI 529 (1088)
Q Consensus 451 ~~~p~~l~-~l~~L~~L~L~~N~l~g~ip~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (1088)
.+|..+. .+++|+.|+|++|+++ .+|..++.....
T Consensus 687 -~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~------------------------------------------ 722 (876)
T 4ecn_A 687 -KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDG------------------------------------------ 722 (876)
T ss_dssp -SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTS------------------------------------------
T ss_pred -ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccc------------------------------------------
Confidence 5666554 7788888888888887 777765321100
Q ss_pred hhccccchhhhhcccCCcccccccCCCcccceeeeceEEccCCccccccCcccc--cCCCccEEeccccccccCCCCccc
Q 001384 530 LTRKSCRSLWDRLLKGTGIFPVCLPGLASRTFQITGYLQLSGNQLSGELSPDIG--KLQNFSMVHLGFNQFDGKLPSQFD 607 (1088)
Q Consensus 530 ~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~l~~L~l~~N~l~g~~p~~~~--~l~~L~~L~l~~N~l~g~~p~~~~ 607 (1088)
. ...+..|++|+|++|+|+ .+|..+. .+++|+.|+|++|++++ +|..++
T Consensus 723 ----~-----------------------l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~ 773 (876)
T 4ecn_A 723 ----N-----------------------YKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPL 773 (876)
T ss_dssp ----C-----------------------CTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGG
T ss_pred ----c-----------------------ccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhh
Confidence 0 001123457888888888 6787776 78888888888888886 777777
Q ss_pred Cc-cceEEEccC------CcccccCCccccCCccCcEEEccccccCCcCCcccccccccceeeccCCCCcc
Q 001384 608 QL-PLIVLNLTR------NNFSGEIPSEFGNIKCLQNLDLSYNNFSGPFPASFNNLTELSKLNISYNPLVS 671 (1088)
Q Consensus 608 ~l-~l~~l~l~~------N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~l~~L~~l~l~~N~l~~ 671 (1088)
.+ .|+.|+|++ |++.+.+|..|+++++|+.|+|++|+| +.+|..+. ++|+.|+|++|++..
T Consensus 774 ~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 774 NSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNIS 841 (876)
T ss_dssp GCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCE
T ss_pred cCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCc
Confidence 77 588888865 889999999999999999999999999 68999876 699999999999843
No 33
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.4e-45 Score=446.73 Aligned_cols=475 Identities=20% Similarity=0.193 Sum_probs=361.6
Q ss_pred cccCCceeCCC--CceeEEeccccccccccccccccCCccCCeeeCCCCCCCCCcCccCCCCCCCcEEECccccccCccc
Q 001384 67 CEWPGIICSPD--KARVNGLNLTDWNISGDIFNNFSALTQLSYLDLSRNTFSGSIPDDLSSCRSLKYLNLSHNILSGDLN 144 (1088)
Q Consensus 67 C~W~gv~C~~~--~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~ 144 (1088)
|++.+++.-+. ..+++.|+|++++|++..+..|+++++|++|+|++|++++..|..|+.+++|++|+|++|.+++...
T Consensus 12 ~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 91 (549)
T 2z81_A 12 GRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSS 91 (549)
T ss_dssp CTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCH
T ss_pred CCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCH
Confidence 45666665443 2478999999999999888999999999999999999998888999999999999999999998653
Q ss_pred --CCCCCCCceeecccccccccccCchhhhcccceEEeccCccC-CCCCCccccCCCCCcEEEccCccccccccc---cC
Q 001384 145 --LSGLRSLEILDLSVNRIHGEISFSFPAICEKLVVANLSLNNL-TGRIDTCFDGCLNLRYLDLSSNNFRGNIWN---GL 218 (1088)
Q Consensus 145 --l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~L~~n~l-~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~---~l 218 (1088)
++++++|++|+|++|++++.........+++|++|++++|++ ....+..|.++++|++|++++|++++..+. .+
T Consensus 92 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 171 (549)
T 2z81_A 92 SWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSI 171 (549)
T ss_dssp HHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTC
T ss_pred HHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhcc
Confidence 899999999999999998743323345578999999999994 555557899999999999999999875443 45
Q ss_pred cccceecccCcccccccccccccCCCccCEEEcCCCcccccC--c-ccccCCCCCcEEEccCccccCCCcc----ccCCC
Q 001384 219 AQLVEFSVSENVLSGVVSSSVFKENCSLEIFDLSENEFIGDF--P-GEVSNCRNLVVLNLFGNNFSGPIPA----EIGSI 291 (1088)
Q Consensus 219 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--p-~~l~~l~~L~~L~L~~N~l~~~~p~----~~~~l 291 (1088)
++|++|++++|.+. .++...+..+++|++|++++|++++.. | .....+++|+.|++++|.+++..+. .+..+
T Consensus 172 ~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~ 250 (549)
T 2z81_A 172 RDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYI 250 (549)
T ss_dssp SEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGC
T ss_pred ccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhh
Confidence 66677777777664 233344455667777777777766531 1 1223456677777777766654332 23455
Q ss_pred CCCCEEeCCCCcCCccC------cccccCCCCCcEEEcCCCcCCCchhHhhhcccccceeecCcCcccCCCCCccccCCC
Q 001384 292 SGLEALFLGKNNFLSVI------PESLLNLSKLEVLDLSSNNFGGEVQKIFGRFTQVKILALHSNSYIDGMNSSGILKLP 365 (1088)
Q Consensus 292 ~~L~~L~L~~N~l~~~~------p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~ 365 (1088)
++|+.|++++|.+.+.. ...+..+.+|+.|++.++.+..... +.. ....+...+
T Consensus 251 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~--~~~------------------l~~~~~~~~ 310 (549)
T 2z81_A 251 LELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYL--FYD------------------LSTVYSLLE 310 (549)
T ss_dssp TTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGG--SCC------------------CCHHHHHST
T ss_pred ccccccccccccccccccccccchhhhhhhcccccccccccccchhhh--ccc------------------chhhhhhcc
Confidence 66666666666654421 1223445556666666555432110 000 011122356
Q ss_pred CcCEEEccCCccCCCCCccc-cCCcCcceeeccccccCCcCC---cccCCCCCCcEEEccCCcCCCCCC--ccccCCCCC
Q 001384 366 NISRLDLSHNNFTGPLPVEI-SQMRSLKFLILAHNRFNGSIP---AVYGNMPNLQTLDLSFNELTGPIP--PSIGNLTSL 439 (1088)
Q Consensus 366 ~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~L~~N~l~~~~p---~~~~~l~~L~~L~L~~N~l~~~~p--~~~~~l~~L 439 (1088)
+|+.|++++|.++ .+|..+ ..+++|++|++++|++++.+| ..++.+++|++|++++|++++..+ ..++.+++|
T Consensus 311 ~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L 389 (549)
T 2z81_A 311 KVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNL 389 (549)
T ss_dssp TCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTC
T ss_pred cceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCC
Confidence 8999999999998 778776 579999999999999998764 347889999999999999985322 458899999
Q ss_pred cEEEccccccccCCCccccCCCCCCeEEccCCcCccCCCchhhccCCCCCccccccccCCcccccCCccccccccccCCC
Q 001384 440 LWLMLANNSLSGEIPGEIGNCTSLLWLNLSNNKLSGNIPPEVMTIGRNARPTFEANQRNGERTIAGSSECLSMKRWIPAD 519 (1088)
Q Consensus 440 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~ 519 (1088)
++|+|++|+++ .+|..++.+++|++|++++|+++ .+|..+
T Consensus 390 ~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~-------------------------------------- 429 (549)
T 2z81_A 390 TSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI-------------------------------------- 429 (549)
T ss_dssp CEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTS--------------------------------------
T ss_pred CEEECCCCCCc-cCChhhcccccccEEECCCCCcc-cccchh--------------------------------------
Confidence 99999999999 78999999999999999999987 344221
Q ss_pred CCCCcceeeehhccccchhhhhcccCCcccccccCCCcccceeeeceEEccCCccccccCcccccCCCccEEeccccccc
Q 001384 520 YPPFSFVYTILTRKSCRSLWDRLLKGTGIFPVCLPGLASRTFQITGYLQLSGNQLSGELSPDIGKLQNFSMVHLGFNQFD 599 (1088)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~l~~L~l~~N~l~g~~p~~~~~l~~L~~L~l~~N~l~ 599 (1088)
| ..+++|+|++|++++.+ +.+++|++|+|++|+++
T Consensus 430 ----------------------------------~-------~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~ 464 (549)
T 2z81_A 430 ----------------------------------P-------QTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK 464 (549)
T ss_dssp ----------------------------------C-------TTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS
T ss_pred ----------------------------------c-------CCceEEECCCCChhhhc----ccCChhcEEECCCCccC
Confidence 0 12467999999999743 57899999999999999
Q ss_pred cCCCCcccCc-cceEEEccCCcccccCCccccCCccCcEEEccccccCCcCC
Q 001384 600 GKLPSQFDQL-PLIVLNLTRNNFSGEIPSEFGNIKCLQNLDLSYNNFSGPFP 650 (1088)
Q Consensus 600 g~~p~~~~~l-~l~~l~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p 650 (1088)
.+|+. +.+ .|++|+|++|++++.+|..|+++++|+.|+|++|++++..|
T Consensus 465 -~ip~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 465 -TLPDA-SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp -SCCCG-GGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred -cCCCc-ccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 78874 444 79999999999999888899999999999999999998766
No 34
>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*
Probab=100.00 E-value=3.7e-45 Score=403.50 Aligned_cols=247 Identities=22% Similarity=0.332 Sum_probs=188.9
Q ss_pred CCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCcc-chHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCC----
Q 001384 805 GKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGLE-GEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGS---- 878 (1088)
Q Consensus 805 ~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~-~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~---- 878 (1088)
++|++.+.||+|+||+||+|+++ +|+.||||++...... ..+.+.+|++++++ ++|||||++++++.+.+
T Consensus 5 ~dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~----l~HpnIV~~~~~~~~~~~~~~ 80 (299)
T 4g31_A 5 TDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAK----LEHPGIVRYFNAWLEKNTTEK 80 (299)
T ss_dssp HHEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECSSHHHHHHHHHHHHHHTT----CCCTTBCCEEEEEEEEC----
T ss_pred hhCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHHHh----CCCCCCCeEEEEEEecCcccc
Confidence 35889999999999999999976 7899999999765332 34578899999987 68999999999987543
Q ss_pred --------eEEEEEEecCCCCHHHHHhhcCC---CCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCE
Q 001384 879 --------EKILVYEYMEGGSLEDIISDRTR---LTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKA 947 (1088)
Q Consensus 879 --------~~~lv~e~~~~gsL~~~l~~~~~---l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~ 947 (1088)
..|+|||||++|+|.++++.... .++..++.|+.||+.||+|||++ +||||||||+|||++.++.+
T Consensus 81 ~~~~~~~~~l~ivmE~~~gg~L~~~l~~~~~~~~~~~~~~~~i~~qi~~al~ylH~~---~IiHRDlKp~NILl~~~~~v 157 (299)
T 4g31_A 81 LQPSSPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFLHSK---GLMHRDLKPSNIFFTMDDVV 157 (299)
T ss_dssp ------CEEEEEEEECCCSCCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCE
T ss_pred ccccCCCcEEEEEEecCCCCcHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHC---cCccccCcHHHeEECCCCcE
Confidence 36899999999999999987654 45567889999999999999999 99999999999999999999
Q ss_pred EEeecccceeecCCCCc-----------ccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhH
Q 001384 948 LVTDFGLARVVSAGDSH-----------VSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEECL 1016 (1088)
Q Consensus 948 kl~Dfg~a~~~~~~~~~-----------~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~ 1016 (1088)
||+|||+|+.+...... .....+||+.|||||++.+..|+.++||||+||++|||++ ||.+..+..
T Consensus 158 Kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyell~---Pf~~~~~~~ 234 (299)
T 4g31_A 158 KVGDFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLY---PFSTQMERV 234 (299)
T ss_dssp EECCCCCC--------------------------CCCTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHS---CCSSHHHHH
T ss_pred EEccCccceecCCCccccccccccccccccCCcccCccccCHHHHcCCCCCCHHHHHHHHHHHHHHcc---CCCCccHHH
Confidence 99999999876543211 1234579999999999999999999999999999999996 776532211
Q ss_pred HHHHHhhhccCCCCCCccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1017 VEWGRRVMGYGRHGPGRAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1017 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
... ..... ....+........+.+++.+||+.||++||++.|+++
T Consensus 235 ~~~-~~~~~----------------~~~p~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~ 279 (299)
T 4g31_A 235 RTL-TDVRN----------------LKFPPLFTQKYPCEYVMVQDMLSPSPMERPEAINIIE 279 (299)
T ss_dssp HHH-HHHHT----------------TCCCHHHHHHCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred HHH-HHHhc----------------CCCCCCCcccCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 111 11110 0001112233445678999999999999999999986
No 35
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.1e-44 Score=435.08 Aligned_cols=437 Identities=21% Similarity=0.184 Sum_probs=339.8
Q ss_pred ceeEEeccccccccccccccccCCccCCeeeCCCCCCCCCcCccCCCCCCCcEEECccccccCcccCCCCCCCceeeccc
Q 001384 79 ARVNGLNLTDWNISGDIFNNFSALTQLSYLDLSRNTFSGSIPDDLSSCRSLKYLNLSHNILSGDLNLSGLRSLEILDLSV 158 (1088)
Q Consensus 79 ~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~ 158 (1088)
.+++.|+|++|.|++..+..|.++++|++|+|++|++++..|..|+++++|++|+|++|++++.... .+++|++|+|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~L~~ 99 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH-PTVNLKHLDLSF 99 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC-CCCCCSEEECCS
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc-ccCCccEEeccC
Confidence 5788999999999998888999999999999999999988899999999999999999999965545 899999999999
Q ss_pred cccccc-ccCchhhhcccceEEeccCccCCCCCCccccCCCCC--cEEEccCccc--cccccccCcccc----eecccCc
Q 001384 159 NRIHGE-ISFSFPAICEKLVVANLSLNNLTGRIDTCFDGCLNL--RYLDLSSNNF--RGNIWNGLAQLV----EFSVSEN 229 (1088)
Q Consensus 159 N~l~~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L--~~L~Ls~N~l--~~~~~~~l~~L~----~L~L~~n 229 (1088)
|++++. +|..+ ..+++|++|+|++|++++ ..+..+++| ++|++++|++ .+..+..+..++ .+++++|
T Consensus 100 N~l~~~~~p~~~-~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n 175 (520)
T 2z7x_B 100 NAFDALPICKEF-GNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTN 175 (520)
T ss_dssp SCCSSCCCCGGG-GGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSS
T ss_pred Cccccccchhhh-ccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEeccC
Confidence 999974 55555 456899999999999987 357777888 9999999999 777777776654 6788899
Q ss_pred ccccccccccccCCCccCEEEcCCCc-------ccccCcccccCCCCCcEEEccCccccCCCccccC---CCCCCCEEeC
Q 001384 230 VLSGVVSSSVFKENCSLEIFDLSENE-------FIGDFPGEVSNCRNLVVLNLFGNNFSGPIPAEIG---SISGLEALFL 299 (1088)
Q Consensus 230 ~l~~~~~~~~~~~l~~L~~L~Ls~n~-------l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~---~l~~L~~L~L 299 (1088)
.+.+.++...+..+++|+.|++++|. +.+.+| .+..+++|+.|++++|.+++..+..+. ..++|++|++
T Consensus 176 ~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l 254 (520)
T 2z7x_B 176 KEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSI 254 (520)
T ss_dssp SCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEE
T ss_pred cchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEe
Confidence 98888888888899999999999987 666666 788889999999999888754333221 2458889999
Q ss_pred CCCcCCccCcccc-----cCCCCCcEEEcCCCcCCCchhHhhhcccccceeecCcCcccCCCCCccccCCCCcCEEEccC
Q 001384 300 GKNNFLSVIPESL-----LNLSKLEVLDLSSNNFGGEVQKIFGRFTQVKILALHSNSYIDGMNSSGILKLPNISRLDLSH 374 (1088)
Q Consensus 300 ~~N~l~~~~p~~l-----~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~ 374 (1088)
++|++++.+|..+ .++++|+.+++++|.+ ..+...+..+ ....+|+.|++++
T Consensus 255 ~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~----------------------~~~~~L~~L~l~~ 311 (520)
T 2z7x_B 255 SNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEI----------------------FSNMNIKNFTVSG 311 (520)
T ss_dssp EEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHH----------------------HHTCCCSEEEEES
T ss_pred ecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcc----------------------cccCceeEEEcCC
Confidence 9998888888888 7888888888888887 3332333322 0113577777777
Q ss_pred CccCCCCCccccCCcCcceeeccccccCCcCCcccCCCCCCcEEEccCCcCCC--CCCccccCCCCCcEEEccccccccC
Q 001384 375 NNFTGPLPVEISQMRSLKFLILAHNRFNGSIPAVYGNMPNLQTLDLSFNELTG--PIPPSIGNLTSLLWLMLANNSLSGE 452 (1088)
Q Consensus 375 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~ 452 (1088)
|.+.+. + .+..+++|++|++++|++++.+|..++.+++|++|++++|++++ .+|..++++++|++|+|++|++++.
T Consensus 312 n~l~~~-~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~ 389 (520)
T 2z7x_B 312 TRMVHM-L-CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYD 389 (520)
T ss_dssp SCCCCC-C-CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCC
T ss_pred Cccccc-c-chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcc
Confidence 777632 1 12577888888888888887788888888888888888888886 4567788888899999999988875
Q ss_pred CCcc-ccCCCCCCeEEccCCcCccCCCchhhccCCCCCccccccccCCcccccCCccccccccccCCCCCCCcceeeehh
Q 001384 453 IPGE-IGNCTSLLWLNLSNNKLSGNIPPEVMTIGRNARPTFEANQRNGERTIAGSSECLSMKRWIPADYPPFSFVYTILT 531 (1088)
Q Consensus 453 ~p~~-l~~l~~L~~L~L~~N~l~g~ip~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (1088)
+|.. +..+++|++|++++|++++.+|..+.
T Consensus 390 l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~------------------------------------------------- 420 (520)
T 2z7x_B 390 EKKGDCSWTKSLLSLNMSSNILTDTIFRCLP------------------------------------------------- 420 (520)
T ss_dssp GGGCSCCCCTTCCEEECCSSCCCGGGGGSCC-------------------------------------------------
T ss_pred cccchhccCccCCEEECcCCCCCcchhhhhc-------------------------------------------------
Confidence 6654 78888899999999988765443210
Q ss_pred ccccchhhhhcccCCcccccccCCCcccceeeeceEEccCCccccccCcccccCCCccEEeccccccccCCCCcccCccc
Q 001384 532 RKSCRSLWDRLLKGTGIFPVCLPGLASRTFQITGYLQLSGNQLSGELSPDIGKLQNFSMVHLGFNQFDGKLPSQFDQLPL 611 (1088)
Q Consensus 532 ~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~l~~L~l~~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~l~l 611 (1088)
..+++|+|++|+++ .+|..+..+++|+.|+|++|+++
T Consensus 421 ------------------------------~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~------------ 457 (520)
T 2z7x_B 421 ------------------------------PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK------------ 457 (520)
T ss_dssp ------------------------------TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC------------
T ss_pred ------------------------------ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC------------
Confidence 01235666666666 55655556666666666555555
Q ss_pred eEEEccCCcccccCCcc-ccCCccCcEEEccccccCCcCC
Q 001384 612 IVLNLTRNNFSGEIPSE-FGNIKCLQNLDLSYNNFSGPFP 650 (1088)
Q Consensus 612 ~~l~l~~N~l~~~~p~~-~~~l~~L~~L~l~~N~l~g~~p 650 (1088)
.+|.. |..+++|+.|+|++|++++..+
T Consensus 458 ------------~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 458 ------------SVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp ------------CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ------------ccCHHHhccCCcccEEECcCCCCcccCC
Confidence 45554 7788899999999999987544
No 36
>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*
Probab=100.00 E-value=1.2e-43 Score=402.30 Aligned_cols=205 Identities=27% Similarity=0.402 Sum_probs=174.8
Q ss_pred HHHHHcCCCCccceecccCceEEEEEEeC----CCcEEEEEEccccCccchHHHHHHHHHHhCCCCCCCCCceeEEeeEE
Q 001384 799 DILKATGKFSEDRIIGKGGFGTVYRGVLP----DGREVAVKKLQREGLEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWC 874 (1088)
Q Consensus 799 ~~~~~~~~~~~~~~LG~G~~g~Vy~~~~~----~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~ 874 (1088)
.+....++|++.+.||+|+||+||+|+++ +++.||||++.+. ....++.+|++++..+. +|||||++++++
T Consensus 15 ~~p~l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~--~~~~~~~~E~~~l~~~~---~h~nIv~l~~~~ 89 (361)
T 4f9c_A 15 AVPQLSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPT--SHPIRIAAELQCLTVAG---GQDNVMGVKYCF 89 (361)
T ss_dssp HSGGGGGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTT--SCHHHHHHHHHHHHHTC---SBTTBCCCSEEE
T ss_pred hcCCccCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEccc--cCHHHHHHHHHHHHHhc---CCCCCceEEEEE
Confidence 33455688999999999999999999853 4678999998765 34467889999998642 799999999999
Q ss_pred ecCCeEEEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCC-CCEEEeecc
Q 001384 875 LDGSEKILVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKE-GKALVTDFG 953 (1088)
Q Consensus 875 ~~~~~~~lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~-~~~kl~Dfg 953 (1088)
.++++.|+||||+++|+|.++++ ++++.+++.++.|++.||+|||++ +||||||||+|||++.+ +.+||+|||
T Consensus 90 ~~~~~~~lvmE~~~g~~L~~~~~---~l~~~~~~~~~~qll~al~ylH~~---gIiHRDiKPeNiLl~~~~~~~kl~DFG 163 (361)
T 4f9c_A 90 RKNDHVVIAMPYLEHESFLDILN---SLSFQEVREYMLNLFKALKRIHQF---GIVHRDVKPSNFLYNRRLKKYALVDFG 163 (361)
T ss_dssp EETTEEEEEEECCCCCCHHHHHT---TCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEETTTTEEEECCCT
T ss_pred EECCEEEEEEeCCCcccHHHHHc---CCCHHHHHHHHHHHHHHHHHHHHC---CeEeCcCCHHHeEEeCCCCeEEECcCC
Confidence 99999999999999999999984 489999999999999999999999 99999999999999877 799999999
Q ss_pred cceeecCCCC---------------------------cccccccccccccCccccCCC-CCCcchhHHHHHHHHHHHHhC
Q 001384 954 LARVVSAGDS---------------------------HVSTTIAGTVGYVAPEYGQTW-QATTKGDVYSFGVLAMELATG 1005 (1088)
Q Consensus 954 ~a~~~~~~~~---------------------------~~~~~~~gt~~y~aPE~~~~~-~~~~~~DvwslG~~l~elltg 1005 (1088)
+|+....... ......+||+.|+|||++.+. .|+.++||||+||++|||++|
T Consensus 164 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~y~~~~DiWSlG~il~ell~G 243 (361)
T 4f9c_A 164 LAQGTHDTKIELLKFVQSEAQQERCSQNKCSICLSRRQQVAPRAGTPGFRAPEVLTKCPNQTTAIDMWSAGVIFLSLLSG 243 (361)
T ss_dssp TCEECTTCSCGGGGGC--------------------------CCCCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHT
T ss_pred CCcccCCccccccccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCCccchhhhHHHHHHHHHC
Confidence 9986543221 112345799999999988764 589999999999999999999
Q ss_pred CcCCCCCch
Q 001384 1006 RRALEGGEE 1014 (1088)
Q Consensus 1006 ~~p~~~~~~ 1014 (1088)
+.||....+
T Consensus 244 ~~Pf~~~~~ 252 (361)
T 4f9c_A 244 RYPFYKASD 252 (361)
T ss_dssp CSSSSCCSS
T ss_pred CCCCCCCCC
Confidence 999976544
No 37
>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.4e-43 Score=405.82 Aligned_cols=267 Identities=22% Similarity=0.276 Sum_probs=203.2
Q ss_pred cCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCc--cchHHHHHHHHHHhCCCCCCCCCceeEEeeEEec----
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGL--EGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLD---- 876 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~---- 876 (1088)
.++|++.+.||+|+||+||+|+++ +|+.||||++.+... ...+.+.+|+++++. ++|||||++++++..
T Consensus 53 ~~~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~----l~HpnIv~l~~~~~~~~~~ 128 (398)
T 4b99_A 53 GDEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKH----FKHDNIIAIKDILRPTVPY 128 (398)
T ss_dssp CSSEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHH----CCCTTBCCEEEECCCSSCT
T ss_pred CCCeEEEEEEecccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHHh----cCCCCcceEeeeeeccccc
Confidence 357999999999999999999975 799999999976532 233568899999997 679999999998764
Q ss_pred --CCeEEEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeeccc
Q 001384 877 --GSEKILVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGL 954 (1088)
Q Consensus 877 --~~~~~lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~ 954 (1088)
.+..|+|||||+ |+|.+++...+++++.+++.|+.||+.||+|||++ +||||||||+|||++.++.+||+|||+
T Consensus 129 ~~~~~~~ivmE~~~-g~L~~~i~~~~~l~~~~~~~~~~qil~al~ylH~~---~iiHRDlKP~NIl~~~~~~~Ki~DFGl 204 (398)
T 4b99_A 129 GEFKSVYVVLDLME-SDLHQIIHSSQPLTLEHVRYFLYQLLRGLKYMHSA---QVIHRDLKPSNLLVNENCELKIGDFGM 204 (398)
T ss_dssp TTCCCEEEEEECCS-EEHHHHHTSSSCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTCCEEECCCTT
T ss_pred ccCCEEEEEEeCCC-CCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---cCcCCCcCccccccCCCCCEEEeecce
Confidence 367899999996 68999999989999999999999999999999999 999999999999999999999999999
Q ss_pred ceeecCCC---CcccccccccccccCccccCCC-CCCcchhHHHHHHHHHHHHhCCcCCCCCchhHH-HHHHhhhccCCC
Q 001384 955 ARVVSAGD---SHVSTTIAGTVGYVAPEYGQTW-QATTKGDVYSFGVLAMELATGRRALEGGEECLV-EWGRRVMGYGRH 1029 (1088)
Q Consensus 955 a~~~~~~~---~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~-~~~~~~~~~~~~ 1029 (1088)
|+.+.... .......+||+.|+|||++.+. .|+.++||||+||++|||++|+.||.+.+.... .-..........
T Consensus 205 a~~~~~~~~~~~~~~~~~~GT~~Y~APEv~~~~~~~~~~~DiWSlG~il~ell~G~~pF~g~~~~~~l~~I~~~~g~p~~ 284 (398)
T 4b99_A 205 ARGLCTSPAEHQYFMTEYVATRWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLARRQLFPGKNYVHQLQLIMMVLGTPSP 284 (398)
T ss_dssp CBCC-------CCCCCSSCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTSCSSCCSSHHHHHHHHHHHHCCCCG
T ss_pred eeecccCccccccccccceeChHhcCHHHhcCCCCCCChhheehhHHHHHHHHHCCCCCCCCCHHHHHHHHHHhcCCCCh
Confidence 98764322 2234567899999999987764 579999999999999999999999987654211 111111100000
Q ss_pred CCCcc----ccchhhc--CCCccc-----cHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1030 GPGRA----VIPVVLL--GSGLAE-----GAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1030 ~~~~~----~~~~~~~--~~~~~~-----~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
..... ....... ....+. ......++.+|+.+||+.||++|||++|+++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~ 344 (398)
T 4b99_A 285 AVIQAVGAERVRAYIQSLPPRQPVPWETVYPGADRQALSLLGRMLRFEPSARISAAAALR 344 (398)
T ss_dssp GGTC-----CHHHHHHSSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred HHhhhhhhhhhhhhhhcCCCcCCCCHHHhCCCCCHHHHHHHHHHCcCChhHCcCHHHHhc
Confidence 00000 0000000 000000 0112356788999999999999999999875
No 38
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=7.4e-43 Score=425.26 Aligned_cols=458 Identities=19% Similarity=0.205 Sum_probs=326.8
Q ss_pred EEeccccccccccccccccCCccCCeeeCCCCCCCCCcCccCCCCCCCcEEECccccccCcc--cCCCCCCCceeecccc
Q 001384 82 NGLNLTDWNISGDIFNNFSALTQLSYLDLSRNTFSGSIPDDLSSCRSLKYLNLSHNILSGDL--NLSGLRSLEILDLSVN 159 (1088)
Q Consensus 82 ~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~N 159 (1088)
..++++++++++ +|..+. ++|++|+|++|.|++..|..|+++++|++|+|++|.+++.. .+.++++|++|||++|
T Consensus 34 ~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 34 SMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp CEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence 568899999997 666554 89999999999999888889999999999999999999753 5899999999999999
Q ss_pred cccccccCchhhhcccceEEeccCccCCCC-CCccccCCCCCcEEEccCccccccccccCcccceecccCcccccccccc
Q 001384 160 RIHGEISFSFPAICEKLVVANLSLNNLTGR-IDTCFDGCLNLRYLDLSSNNFRGNIWNGLAQLVEFSVSENVLSGVVSSS 238 (1088)
Q Consensus 160 ~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 238 (1088)
+++ .+|.. .+++|++|+|++|++++. .|..|+++++|++|++++|++++..+..+++|
T Consensus 111 ~l~-~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L----------------- 169 (562)
T 3a79_B 111 RLQ-NISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHL----------------- 169 (562)
T ss_dssp CCC-EECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTS-----------------
T ss_pred cCC-ccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhc-----------------
Confidence 998 45544 568899999999998874 46788888888888888888765333333222
Q ss_pred cccCCCccCEEEcCCCcc--cccCcccccCCC-CCcEEEccCccccCCCcc-ccCCCCCCCEEeCCCCcC-----CccCc
Q 001384 239 VFKENCSLEIFDLSENEF--IGDFPGEVSNCR-NLVVLNLFGNNFSGPIPA-EIGSISGLEALFLGKNNF-----LSVIP 309 (1088)
Q Consensus 239 ~~~~l~~L~~L~Ls~n~l--~~~~p~~l~~l~-~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~L~~N~l-----~~~~p 309 (1088)
+|++|++++|.+ ++..|..+..+. ..-.+++++|.+.+.++. .+..+++|+.|++++|.. .+ .+
T Consensus 170 ------~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~-~~ 242 (562)
T 3a79_B 170 ------HLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMT-FL 242 (562)
T ss_dssp ------CEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHH-HH
T ss_pred ------eeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHH-HH
Confidence 235555555555 455555555443 111345556655544333 234455555555555531 11 12
Q ss_pred ccccCCCCCcEEEcCCCcCCCchhHhhhcccccceeecCcCcccCCCCCccccCCCCcCEEEccCCccCCCCCccc----
Q 001384 310 ESLLNLSKLEVLDLSSNNFGGEVQKIFGRFTQVKILALHSNSYIDGMNSSGILKLPNISRLDLSHNNFTGPLPVEI---- 385 (1088)
Q Consensus 310 ~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l---- 385 (1088)
..+..+++|+.|+++++.+.+.....+. .....++|++|++++|.++|.+|..+
T Consensus 243 ~~l~~l~~L~~L~L~~~~l~~~~~~~~~----------------------~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~ 300 (562)
T 3a79_B 243 SELTRGPTLLNVTLQHIETTWKCSVKLF----------------------QFFWPRPVEYLNIYNLTITERIDREEFTYS 300 (562)
T ss_dssp HHHHSCSSCEEEEEEEEEECHHHHHHHH----------------------HHHTTSSEEEEEEEEEEECSCCCCCCCCCC
T ss_pred HHHhccCcceEEEecCCcCcHHHHHHHH----------------------HhhhcccccEEEEeccEeeccccchhhhcc
Confidence 2345555666666655555433211110 00123478888888888888888877
Q ss_pred -cCCcCcceeeccccccCCcCC-cccCC---CCCCcEEEccCCcCCCCCCccccCCCCCcEEEccccccccCCCccccCC
Q 001384 386 -SQMRSLKFLILAHNRFNGSIP-AVYGN---MPNLQTLDLSFNELTGPIPPSIGNLTSLLWLMLANNSLSGEIPGEIGNC 460 (1088)
Q Consensus 386 -~~l~~L~~L~L~~N~l~~~~p-~~~~~---l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l 460 (1088)
.+++.|+.++++.|.+ .+| ..+.. ..+|+.|++++|.+.. ++ ..+.+++|++|++++|++++.+|..++++
T Consensus 301 ~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~-~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 376 (562)
T 3a79_B 301 ETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIH-MV-CPPSPSSFTFLNFTQNVFTDSVFQGCSTL 376 (562)
T ss_dssp SCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCC-CC-CCSSCCCCCEEECCSSCCCTTTTTTCCSC
T ss_pred cccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccc-cc-CccCCCCceEEECCCCccccchhhhhccc
Confidence 6777777777777776 344 22222 2568888888888763 22 12677888888888888888788888888
Q ss_pred CCCCeEEccCCcCccCCCchhhccCCCCCccccccccCCcccccCCccccccccccCCCCCCCcceeeehhccccchhhh
Q 001384 461 TSLLWLNLSNNKLSGNIPPEVMTIGRNARPTFEANQRNGERTIAGSSECLSMKRWIPADYPPFSFVYTILTRKSCRSLWD 540 (1088)
Q Consensus 461 ~~L~~L~L~~N~l~g~ip~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 540 (1088)
++|++|+|++|++++ +|.....+.
T Consensus 377 ~~L~~L~L~~N~l~~-~~~~~~~~~------------------------------------------------------- 400 (562)
T 3a79_B 377 KRLQTLILQRNGLKN-FFKVALMTK------------------------------------------------------- 400 (562)
T ss_dssp SSCCEEECCSSCCCB-TTHHHHTTT-------------------------------------------------------
T ss_pred CCCCEEECCCCCcCC-cccchhhhc-------------------------------------------------------
Confidence 888888888888873 332100000
Q ss_pred hcccCCcccccccCCCcccceeeeceEEccCCccccccCcc-cccCCCccEEeccccccccCCCCcccCccceEEEccCC
Q 001384 541 RLLKGTGIFPVCLPGLASRTFQITGYLQLSGNQLSGELSPD-IGKLQNFSMVHLGFNQFDGKLPSQFDQLPLIVLNLTRN 619 (1088)
Q Consensus 541 ~~~~~~~~~~~~l~~~~~~~~~~l~~L~l~~N~l~g~~p~~-~~~l~~L~~L~l~~N~l~g~~p~~~~~l~l~~l~l~~N 619 (1088)
.+..+++|++++|++++.+|.. +..+++|+.|++++|++++.+|..+. -.|+.|+|++|
T Consensus 401 -------------------~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~-~~L~~L~L~~N 460 (562)
T 3a79_B 401 -------------------NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP-PKVKVLDLHNN 460 (562)
T ss_dssp -------------------TCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC-TTCSEEECCSS
T ss_pred -------------------CCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc-CcCCEEECCCC
Confidence 0122457888888888766654 77889999999999999888887765 46889999999
Q ss_pred cccccCCccccCCccCcEEEccccccCCcCCcc-cccccccceeeccCCCCccccCC
Q 001384 620 NFSGEIPSEFGNIKCLQNLDLSYNNFSGPFPAS-FNNLTELSKLNISYNPLVSGTIP 675 (1088)
Q Consensus 620 ~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~-~~~l~~L~~l~l~~N~l~~g~ip 675 (1088)
+++ .+|..+.++++|+.|+|++|+|+ .+|.. +..+++|+.|++++|++ .+..|
T Consensus 461 ~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~-~c~c~ 514 (562)
T 3a79_B 461 RIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPW-DCTCP 514 (562)
T ss_dssp CCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCB-CCCHH
T ss_pred cCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCc-CCCcc
Confidence 999 89998889999999999999999 67776 99999999999999999 44544
No 39
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.2e-41 Score=421.76 Aligned_cols=544 Identities=21% Similarity=0.178 Sum_probs=333.7
Q ss_pred ccccccCCCCCCcccCCceeCCCCceeEEeccccccccccccccccCCccCCeeeCCCCCCCCCcCccCCCCCCCcEEEC
Q 001384 55 GHYMQWNQSSSPCEWPGIICSPDKARVNGLNLTDWNISGDIFNNFSALTQLSYLDLSRNTFSGSIPDDLSSCRSLKYLNL 134 (1088)
Q Consensus 55 ~~~~sW~~~~~~C~W~gv~C~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 134 (1088)
..+++|+.+. |..|....|......| +=++.+++. +|+.+- +++++|||++|+|++..|.+|.++++|++|+|
T Consensus 11 ~~~~~~~~~~-p~~~~~c~~~~~~~~~---~c~~~~l~~-vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~L 83 (635)
T 4g8a_A 11 DKLAAANSSI-PESWEPCVEVVPNITY---QCMELNFYK-IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDL 83 (635)
T ss_dssp ---------------CCSEEEETTTEE---ECTTSCCSS-CCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred chhhcccCCC-CCCCCCccccCCCCEE---ECCCCCcCc-cCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEEC
Confidence 3577777543 3335443333211111 222334443 444332 47889999999999777788999999999999
Q ss_pred ccccccCcc--cCCCCCCCceeecccccccccccCchhhhcccceEEeccCccCCCCCCccccCCCCCcEEEccCccccc
Q 001384 135 SHNILSGDL--NLSGLRSLEILDLSVNRIHGEISFSFPAICEKLVVANLSLNNLTGRIDTCFDGCLNLRYLDLSSNNFRG 212 (1088)
Q Consensus 135 s~n~l~~~~--~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~ 212 (1088)
++|+|++.. .|.++++|++|+|++|+|++..+..| ..+++|++|+|++|++++..+..|+++++|++|+|++|++++
T Consensus 84 s~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f-~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~ 162 (635)
T 4g8a_A 84 SRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF-SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 162 (635)
T ss_dssp TTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGG-TTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCC
T ss_pred CCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHh-cCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCcccc
Confidence 999998754 58899999999999999986544444 556889999999999999888889999999999999998865
Q ss_pred ----cccccCcccceecccCcccccccccccccCCC----ccCEEEcCCCcccccCcccccCCCCCcEEEccCccccC-C
Q 001384 213 ----NIWNGLAQLVEFSVSENVLSGVVSSSVFKENC----SLEIFDLSENEFIGDFPGEVSNCRNLVVLNLFGNNFSG-P 283 (1088)
Q Consensus 213 ----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~----~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~-~ 283 (1088)
..+..+++|++|++++|.+++..+ ..|..+. .+..++++.|.+....+..+ ....++.+++.+|.... .
T Consensus 163 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~ 240 (635)
T 4g8a_A 163 FKLPEYFSNLTNLEHLDLSSNKIQSIYC-TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNV 240 (635)
T ss_dssp CCCCGGGGGCTTCCEEECCSSCCCEECG-GGGHHHHTCTTCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHH
T ss_pred CCCchhhccchhhhhhcccCcccccccc-ccccchhhhhhhhhhhhcccCcccccCcccc-cchhhhhhhhhcccccccc
Confidence 334567888889999988886543 3343332 34578899999886555544 44567888888887653 2
Q ss_pred CccccCCCCCCCEEeCCCCc------CCccCcccccCCCCCcEEEcCCCcCCCc---hhHhhhcccccceeecCcCcccC
Q 001384 284 IPAEIGSISGLEALFLGKNN------FLSVIPESLLNLSKLEVLDLSSNNFGGE---VQKIFGRFTQVKILALHSNSYID 354 (1088)
Q Consensus 284 ~p~~~~~l~~L~~L~L~~N~------l~~~~p~~l~~l~~L~~L~L~~N~l~~~---~~~~~~~l~~L~~L~L~~n~~~~ 354 (1088)
.+..+..+..++...+..+. +....+..+..+..+..+++..+..... ....+..+..++.+.+..+.+..
T Consensus 241 ~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 320 (635)
T 4g8a_A 241 MKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIER 320 (635)
T ss_dssp HHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEE
T ss_pred cchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccc
Confidence 34456677777766654332 2233344455555666666655443322 33456667778888877776433
Q ss_pred CCCCccccCCCCcCEEEccCCccCCCCCccccCCcCcceeeccccccCCcCCcccCCCCCCcEEEccCCcCCC--CCCcc
Q 001384 355 GMNSSGILKLPNISRLDLSHNNFTGPLPVEISQMRSLKFLILAHNRFNGSIPAVYGNMPNLQTLDLSFNELTG--PIPPS 432 (1088)
Q Consensus 355 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~--~~p~~ 432 (1088)
. ..+....+|+.|++++|.+.+..+. .++.|+.+++..|.+... .....+++|+.|++++|.+.. ..+..
T Consensus 321 ~---~~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~ 392 (635)
T 4g8a_A 321 V---KDFSYNFGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQS 392 (635)
T ss_dssp C---GGGGSCCCCSEEEEESCEESSCCCC---BCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHH
T ss_pred c---cccccchhhhhhhcccccccCcCcc---cchhhhhcccccccCCCC--cccccccccccchhhccccccccccccc
Confidence 2 2344567788889988888754333 456788888888887632 234568888889998888753 45666
Q ss_pred ccCCCCCcEEEccccccccCCCccccCCCCCCeEEccCCcCccCCCchh-hccCCCCCccccccccCCcccccCCccccc
Q 001384 433 IGNLTSLLWLMLANNSLSGEIPGEIGNCTSLLWLNLSNNKLSGNIPPEV-MTIGRNARPTFEANQRNGERTIAGSSECLS 511 (1088)
Q Consensus 433 ~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~~-~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~ 511 (1088)
+..+.+|++|++..|.+. .++..+..+++|+.+++++|+..+..+... ..+..+..+.+..|...+.
T Consensus 393 ~~~~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~----------- 460 (635)
T 4g8a_A 393 DFGTISLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA----------- 460 (635)
T ss_dssp HHSCSCCCEEECCSCSEE-EECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEEC-----------
T ss_pred hhhhhhhhhhhccccccc-cccccccccccccchhhhhccccccccccccccccccccccccccccccc-----------
Confidence 777888888888888887 466678888888888888888875544322 1111111111111110000
Q ss_pred cccccCCCCCCCcceeeehhccccchhhhhcccCCcccccccCCCcccceeeeceEEccCCccc-cccCcccccCCCccE
Q 001384 512 MKRWIPADYPPFSFVYTILTRKSCRSLWDRLLKGTGIFPVCLPGLASRTFQITGYLQLSGNQLS-GELSPDIGKLQNFSM 590 (1088)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~l~~L~l~~N~l~-g~~p~~~~~l~~L~~ 590 (1088)
.+ ........+++|+|++|++. +.+|..+..+++|++
T Consensus 461 -------------------------------------~~-----~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~ 498 (635)
T 4g8a_A 461 -------------------------------------FN-----GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 498 (635)
T ss_dssp -------------------------------------CT-----TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCE
T ss_pred -------------------------------------cc-----cccccchhhhhhhhhhcccccccCchhhhhccccCE
Confidence 00 00001112344555555432 234455555555555
Q ss_pred EeccccccccCCCCcccCc-cceEEEccCCcccccCCccccCCccCcEEEccccccCCcCCcccccc-cccceeeccCCC
Q 001384 591 VHLGFNQFDGKLPSQFDQL-PLIVLNLTRNNFSGEIPSEFGNIKCLQNLDLSYNNFSGPFPASFNNL-TELSKLNISYNP 668 (1088)
Q Consensus 591 L~l~~N~l~g~~p~~~~~l-~l~~l~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~l-~~L~~l~l~~N~ 668 (1088)
|+|++|+|++.+|..|+.+ .|++|+|++|+|++..|..|.++++|+.|||++|+|++..|..+..+ ++|+.|+|++||
T Consensus 499 L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 499 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred EECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 5555555555555555555 45555555555555445555555555555555555555555555554 355555555555
Q ss_pred Cc
Q 001384 669 LV 670 (1088)
Q Consensus 669 l~ 670 (1088)
|.
T Consensus 579 ~~ 580 (635)
T 4g8a_A 579 FA 580 (635)
T ss_dssp BC
T ss_pred Cc
Confidence 53
No 40
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=100.00 E-value=3.6e-43 Score=417.61 Aligned_cols=246 Identities=26% Similarity=0.334 Sum_probs=200.4
Q ss_pred CCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCc---cchHHHHHH---HHHHhCCCCCCCCCceeEEeeEEecC
Q 001384 805 GKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGL---EGEREFRAE---MEVLSGNGFGWPHPNLVTLYGWCLDG 877 (1088)
Q Consensus 805 ~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~---~~~~~~~~E---~~~l~~~~~~l~h~niv~l~~~~~~~ 877 (1088)
++|++.++||+|+||+||+|+.+ +|+.||||++.+... .....+.+| +.++.. ++|||||++++++.++
T Consensus 189 ddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~----~~HP~IV~l~~~f~~~ 264 (689)
T 3v5w_A 189 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVST----GDCPFIVCMSYAFHTP 264 (689)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSS----SCCTTBCCEEEEEECS
T ss_pred HHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhh----CCCCCEeEEEEEEEEC
Confidence 46899999999999999999976 699999999976432 222334444 445543 6899999999999999
Q ss_pred CeEEEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeeccccee
Q 001384 878 SEKILVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARV 957 (1088)
Q Consensus 878 ~~~~lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~ 957 (1088)
+..|+|||||+||+|.+++++.+.+++..++.|+.||+.||+|||++ +||||||||+|||++.+|++||+|||+|+.
T Consensus 265 ~~lylVmEy~~GGdL~~~l~~~~~l~E~~a~~y~~qIl~aL~yLH~~---gIiHRDLKPeNILld~~G~vKL~DFGlA~~ 341 (689)
T 3v5w_A 265 DKLSFILDLMNGGDLHYHLSQHGVFSEADMRFYAAEIILGLEHMHNR---FVVYRDLKPANILLDEHGHVRISDLGLACD 341 (689)
T ss_dssp SEEEEEECCCCSCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCSGGGEEECTTSCEEECCCTTCEE
T ss_pred CEEEEEEecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCchHHeEEeCCCCEEecccceeee
Confidence 99999999999999999999989999999999999999999999999 999999999999999999999999999988
Q ss_pred ecCCCCcccccccccccccCccccC-CCCCCcchhHHHHHHHHHHHHhCCcCCCCCch-hHHHHHHhhhccCCCCCCccc
Q 001384 958 VSAGDSHVSTTIAGTVGYVAPEYGQ-TWQATTKGDVYSFGVLAMELATGRRALEGGEE-CLVEWGRRVMGYGRHGPGRAV 1035 (1088)
Q Consensus 958 ~~~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~~~DvwslG~~l~elltg~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 1035 (1088)
+... .....+||+.|||||++. +..|+.++||||+||++|||++|+.||.+... ...+..........
T Consensus 342 ~~~~---~~~t~~GTp~YmAPEvl~~~~~y~~~vDiWSLGvilYEmLtG~~PF~~~~~~~~~~i~~~i~~~~~------- 411 (689)
T 3v5w_A 342 FSKK---KPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTMAV------- 411 (689)
T ss_dssp CSSC---CCCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCTTCGGGCCCHHHHHHHHHHCCC-------
T ss_pred cCCC---CCCCccCCcCccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHhhcCCCC-------
Confidence 7532 234568999999999986 45799999999999999999999999976432 11122222221110
Q ss_pred cchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCC-----HHHHH
Q 001384 1036 IPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPN-----VKEVL 1077 (1088)
Q Consensus 1036 ~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs-----~~eil 1077 (1088)
..+.....++.+++.+|++.||.+|++ ++||+
T Consensus 412 ----------~~p~~~S~~a~dLI~~lL~~dP~~Rl~~~~~ga~ei~ 448 (689)
T 3v5w_A 412 ----------ELPDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVK 448 (689)
T ss_dssp ----------CCCTTSCHHHHHHHHHHTCSCGGGCTTCSSSTHHHHT
T ss_pred ----------CCCccCCHHHHHHHHHHccCCHhHCCCCCCCCHHHHh
Confidence 112223456888999999999999998 67765
No 41
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A
Probab=100.00 E-value=5.8e-42 Score=412.41 Aligned_cols=250 Identities=23% Similarity=0.352 Sum_probs=210.2
Q ss_pred CCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeEEEE
Q 001384 805 GKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGLEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEKILV 883 (1088)
Q Consensus 805 ~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~~lv 883 (1088)
++|++.+.||+|+||+||+|+++ +|+.||+|++........+.+.+|+++|+. ++|||||++++++.++...|+|
T Consensus 157 ~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~~~~~~~~~Ei~il~~----l~hpnIv~l~~~~~~~~~~~iv 232 (573)
T 3uto_A 157 DHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSV----LRHPTLVNLHDAFEDDNEMVMI 232 (573)
T ss_dssp GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHHH----TCCTTBCCEEEEEECSSEEEEE
T ss_pred cccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccchhhHHHHHHHHHHHHh----CCCCCCCeEEEEEEECCEEEEE
Confidence 57999999999999999999976 799999999987765666788999999997 6799999999999999999999
Q ss_pred EEecCCCCHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCC--CCEEEeecccceeecC
Q 001384 884 YEYMEGGSLEDIISD-RTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKE--GKALVTDFGLARVVSA 960 (1088)
Q Consensus 884 ~e~~~~gsL~~~l~~-~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~--~~~kl~Dfg~a~~~~~ 960 (1088)
||||+||+|.+++.. ...+++.+++.++.||+.||+|||++ +|+||||||+|||++.+ +.+||+|||+|+.+..
T Consensus 233 ~E~~~gg~L~~~i~~~~~~l~e~~~~~~~~qi~~al~ylH~~---~iiHRDlKp~Nill~~~~~~~vKl~DFG~a~~~~~ 309 (573)
T 3uto_A 233 YEFMSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMHEN---NYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDP 309 (573)
T ss_dssp EECCCCCBHHHHHTCTTSCEEHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSCCCEEECCCSSCEECCT
T ss_pred EeecCCCcHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCChhhccccCCCCCCEEEeeccceeEccC
Confidence 999999999999964 45799999999999999999999999 99999999999999854 8999999999998754
Q ss_pred CCCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCCCCCccccchhh
Q 001384 961 GDSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRHGPGRAVIPVVL 1040 (1088)
Q Consensus 961 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1040 (1088)
. ......+||+.|+|||++.+..|+.++||||+||++|||++|+.||.+..... ....+...... ++.
T Consensus 310 ~--~~~~~~~GT~~y~APEv~~~~~y~~~~DiWSlGvilyeml~G~~Pf~~~~~~~--~~~~i~~~~~~------~~~-- 377 (573)
T 3uto_A 310 K--QSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDDE--TLRNVKSCDWN------MDD-- 377 (573)
T ss_dssp T--SEEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHH--HHHHHHTTCCC------CCS--
T ss_pred C--CceeeeEECccccCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHH--HHHHHHhCCCC------CCc--
Confidence 3 23445689999999999999999999999999999999999999998765422 12222211110 000
Q ss_pred cCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1041 LGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1041 ~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
........++.+|+.+||+.||.+||+++|+++
T Consensus 378 -----~~~~~~s~~~~dli~~~L~~dp~~R~t~~e~l~ 410 (573)
T 3uto_A 378 -----SAFSGISEDGKDFIRKLLLADPNTRMTIHQALE 410 (573)
T ss_dssp -----GGGTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred -----ccccCCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 001122356788999999999999999999986
No 42
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2e-41 Score=412.58 Aligned_cols=368 Identities=23% Similarity=0.183 Sum_probs=285.2
Q ss_pred ceeEEeccccccccccccccccCCccCCeeeCCCCCCCCCcCccCCCCCCCcEEECccccccCcccCCCCCCCceeeccc
Q 001384 79 ARVNGLNLTDWNISGDIFNNFSALTQLSYLDLSRNTFSGSIPDDLSSCRSLKYLNLSHNILSGDLNLSGLRSLEILDLSV 158 (1088)
Q Consensus 79 ~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~ 158 (1088)
.+++.|+|++|.|++..+.+|+++++|++|+|++|+|++..|..|+++++|++|+|++|.++..... .+++|++|+|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~Ls~ 130 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC-PMASLRHLDLSF 130 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC-CCTTCSEEECCS
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc-ccccCCEEECCC
Confidence 5788999999999998888999999999999999999988899999999999999999999965544 899999999999
Q ss_pred ccccccc-cCchhhhcccceEEeccCccCCCCCCccccCCCCC--cEEEccCccc--cccccccCcccc----eecccCc
Q 001384 159 NRIHGEI-SFSFPAICEKLVVANLSLNNLTGRIDTCFDGCLNL--RYLDLSSNNF--RGNIWNGLAQLV----EFSVSEN 229 (1088)
Q Consensus 159 N~l~~~~-~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L--~~L~Ls~N~l--~~~~~~~l~~L~----~L~L~~n 229 (1088)
|++++.. |..+ ..+++|++|+|++|++++.. +..+++| ++|++++|++ ++..+..+..+. .+++++|
T Consensus 131 N~l~~l~~p~~~-~~l~~L~~L~L~~n~l~~~~---~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n 206 (562)
T 3a79_B 131 NDFDVLPVCKEF-GNLTKLTFLGLSAAKFRQLD---LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPN 206 (562)
T ss_dssp SCCSBCCCCGGG-GGCTTCCEEEEECSBCCTTT---TGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSS
T ss_pred CCccccCchHhh-cccCcccEEecCCCccccCc---hhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCc
Confidence 9998743 4444 45689999999999999754 4455555 9999999999 776666665544 5678888
Q ss_pred ccccccccccccCCCccCEEEcCCCc-----ccccCcccccCCCCCcEEEccCccccCCC----ccccCCCCCCCEEeCC
Q 001384 230 VLSGVVSSSVFKENCSLEIFDLSENE-----FIGDFPGEVSNCRNLVVLNLFGNNFSGPI----PAEIGSISGLEALFLG 300 (1088)
Q Consensus 230 ~l~~~~~~~~~~~l~~L~~L~Ls~n~-----l~~~~p~~l~~l~~L~~L~L~~N~l~~~~----p~~~~~l~~L~~L~L~ 300 (1088)
.+.+.++...+..+++|+.|++++|+ +. ..+..+..+++|+.|+++++.+.+.. +..+ ..++|++|+++
T Consensus 207 ~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~-~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L~l~ 284 (562)
T 3a79_B 207 SLFSVQVNMSVNALGHLQLSNIKLNDENCQRLM-TFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF-WPRPVEYLNIY 284 (562)
T ss_dssp SCCCCCCEEEESSEEEEEEEEEECCSTTHHHHH-HHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHH-TTSSEEEEEEE
T ss_pred cchhhhhhhcccccceEEEecccccccccchHH-HHHHHHhccCcceEEEecCCcCcHHHHHHHHHhh-hcccccEEEEe
Confidence 88888888888888899999999885 22 22345777888888888888776432 2222 23478888888
Q ss_pred CCcCCccCcccc-----cCCCCCcEEEcCCCcCCCchhHhhhcccccceeecCcCcccCCCCCccccCCCCcCEEEccCC
Q 001384 301 KNNFLSVIPESL-----LNLSKLEVLDLSSNNFGGEVQKIFGRFTQVKILALHSNSYIDGMNSSGILKLPNISRLDLSHN 375 (1088)
Q Consensus 301 ~N~l~~~~p~~l-----~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~N 375 (1088)
+|.+++.+|..+ .++++|+.++++.|.+ ..+...+..+ ....+|+.|++++|
T Consensus 285 ~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~----------------------~~~~~L~~L~l~~n 341 (562)
T 3a79_B 285 NLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSV----------------------FAEMNIKMLSISDT 341 (562)
T ss_dssp EEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHH----------------------HHTCCCSEEEEESS
T ss_pred ccEeeccccchhhhcccccchheehhhccccee-ecChhhhhhh----------------------hccCcceEEEccCC
Confidence 888887788777 6667777777777766 2222222211 01246778888888
Q ss_pred ccCCCCCccccCCcCcceeeccccccCCcCCcccCCCCCCcEEEccCCcCCC--CCCccccCCCCCcEEEccccccccCC
Q 001384 376 NFTGPLPVEISQMRSLKFLILAHNRFNGSIPAVYGNMPNLQTLDLSFNELTG--PIPPSIGNLTSLLWLMLANNSLSGEI 453 (1088)
Q Consensus 376 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~ 453 (1088)
.+.... ....+++|++|++++|++++.+|..++++++|++|++++|++++ .+|..++++++|++|+|++|++++.+
T Consensus 342 ~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 419 (562)
T 3a79_B 342 PFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHA 419 (562)
T ss_dssp CCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCC
T ss_pred Cccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCcc
Confidence 776321 12577888899999999888888888889999999999999885 23466888899999999999998756
Q ss_pred Cc-cccCCCCCCeEEccCCcCccCCC
Q 001384 454 PG-EIGNCTSLLWLNLSNNKLSGNIP 478 (1088)
Q Consensus 454 p~-~l~~l~~L~~L~L~~N~l~g~ip 478 (1088)
|. .+..+++|++|++++|++++.+|
T Consensus 420 ~~~~~~~l~~L~~L~l~~n~l~~~~~ 445 (562)
T 3a79_B 420 YDRTCAWAESILVLNLSSNMLTGSVF 445 (562)
T ss_dssp SSCCCCCCTTCCEEECCSSCCCGGGG
T ss_pred ChhhhcCcccCCEEECCCCCCCcchh
Confidence 65 47888999999999998875444
No 43
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=3.9e-41 Score=396.22 Aligned_cols=320 Identities=20% Similarity=0.193 Sum_probs=162.5
Q ss_pred CCccCCeeeCCCCCCCCCcCccCCCCCCCcEEECccccccCcc--cCCCCCCCceeecccccccccccCchhhhcccceE
Q 001384 101 ALTQLSYLDLSRNTFSGSIPDDLSSCRSLKYLNLSHNILSGDL--NLSGLRSLEILDLSVNRIHGEISFSFPAICEKLVV 178 (1088)
Q Consensus 101 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~ 178 (1088)
..++|++|++++|.+ |.+|++++++++|++|+|++|.+++.. .++++++|+.+++..|.. .++++
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~------------~~l~~ 75 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD------------RQAHE 75 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH------------HTCSE
T ss_pred ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc------------cCCCE
Confidence 346677777777777 577777777777777777777766432 466666666666655532 34566
Q ss_pred EeccCccCCCCCCccccCCCCCcEEEccCccccccccccCcccceecccCcccccccccccccCCCccCEEEcCCCcccc
Q 001384 179 ANLSLNNLTGRIDTCFDGCLNLRYLDLSSNNFRGNIWNGLAQLVEFSVSENVLSGVVSSSVFKENCSLEIFDLSENEFIG 258 (1088)
Q Consensus 179 L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 258 (1088)
|++++|++++... -.++|++|++++|++++ ++..+++|+.|++++|.+++... ..++|++|++++|++++
T Consensus 76 L~l~~~~l~~lp~----~~~~L~~L~l~~n~l~~-lp~~~~~L~~L~l~~n~l~~l~~-----~~~~L~~L~L~~n~l~~ 145 (454)
T 1jl5_A 76 LELNNLGLSSLPE----LPPHLESLVASCNSLTE-LPELPQSLKSLLVDNNNLKALSD-----LPPLLEYLGVSNNQLEK 145 (454)
T ss_dssp EECTTSCCSCCCS----CCTTCSEEECCSSCCSS-CCCCCTTCCEEECCSSCCSCCCS-----CCTTCCEEECCSSCCSS
T ss_pred EEecCCccccCCC----CcCCCCEEEccCCcCCc-cccccCCCcEEECCCCccCcccC-----CCCCCCEEECcCCCCCC
Confidence 6666666665332 12566777777776665 44445566666666666654211 11577888888887775
Q ss_pred cCcccccCCCCCcEEEccCccccCCCccccCCCCCCCEEeCCCCcCCccCcccccCCCCCcEEEcCCCcCCCchhHhhhc
Q 001384 259 DFPGEVSNCRNLVVLNLFGNNFSGPIPAEIGSISGLEALFLGKNNFLSVIPESLLNLSKLEVLDLSSNNFGGEVQKIFGR 338 (1088)
Q Consensus 259 ~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~ 338 (1088)
+| .++++++|++|++++|++++ +|..+ .+|++|++++|++++ +| .++++++|++|++++|++++.+. .
T Consensus 146 -lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~-~--- 213 (454)
T 1jl5_A 146 -LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPD-L--- 213 (454)
T ss_dssp -CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCC-C---
T ss_pred -Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCC-C---
Confidence 66 57788888888888888774 55433 477888888887776 45 57777888888888887775321 1
Q ss_pred ccccceeecCcCcccCCCCCccccCCCCcCEEEccCCccCCCCCccccCCcCcceeeccccccCCcCCcccCCCCCCcEE
Q 001384 339 FTQVKILALHSNSYIDGMNSSGILKLPNISRLDLSHNNFTGPLPVEISQMRSLKFLILAHNRFNGSIPAVYGNMPNLQTL 418 (1088)
Q Consensus 339 l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 418 (1088)
.++|+.|++++|.+. .++ .+..+++|++|++++|++++ +|.. +++|+.|++++|++++ +|.. +++|++|
T Consensus 214 ~~~L~~L~l~~n~l~-~lp--~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L 282 (454)
T 1jl5_A 214 PLSLESIVAGNNILE-ELP--ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFL 282 (454)
T ss_dssp CTTCCEEECCSSCCS-SCC--CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEE
T ss_pred cCcccEEECcCCcCC-ccc--ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEE
Confidence 124444444444432 111 13444455555555555542 3321 2444555555555542 3332 2444555
Q ss_pred EccCCcCCCCCCccccCCCCCcEEEccccccccCCCccccCCCCCCeEEccCCcCc
Q 001384 419 DLSFNELTGPIPPSIGNLTSLLWLMLANNSLSGEIPGEIGNCTSLLWLNLSNNKLS 474 (1088)
Q Consensus 419 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 474 (1088)
++++|++++ +|.. .++|++|++++|++++ ++.. .++|++|++++|+++
T Consensus 283 ~ls~N~l~~-l~~~---~~~L~~L~l~~N~l~~-i~~~---~~~L~~L~Ls~N~l~ 330 (454)
T 1jl5_A 283 DVSENIFSG-LSEL---PPNLYYLNASSNEIRS-LCDL---PPSLEELNVSNNKLI 330 (454)
T ss_dssp ECCSSCCSE-ESCC---CTTCCEEECCSSCCSE-ECCC---CTTCCEEECCSSCCS
T ss_pred ECcCCccCc-ccCc---CCcCCEEECcCCcCCc-ccCC---cCcCCEEECCCCccc
Confidence 555555443 1111 1344455555554442 2210 124455555555444
No 44
>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*
Probab=100.00 E-value=3.5e-41 Score=381.16 Aligned_cols=282 Identities=40% Similarity=0.731 Sum_probs=234.2
Q ss_pred CCccCHHHHHHHcCCCCccceecccCceEEEEEEeCCCcEEEEEEccccCcc-chHHHHHHHHHHhCCCCCCCCCceeEE
Q 001384 792 KTAFTYSDILKATGKFSEDRIIGKGGFGTVYRGVLPDGREVAVKKLQREGLE-GEREFRAEMEVLSGNGFGWPHPNLVTL 870 (1088)
Q Consensus 792 ~~~~~~~~~~~~~~~~~~~~~LG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~-~~~~~~~E~~~l~~~~~~l~h~niv~l 870 (1088)
...+++.++....++|++.+.||+|+||.||+|+.++++.||||++...... ....+.+|++++.. ++||||+++
T Consensus 17 ~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~----l~h~~iv~~ 92 (326)
T 3uim_A 17 LKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMISM----AVHRNLLRL 92 (326)
T ss_dssp CEECCTHHHHTTTTSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC-----CCCHHHHHHHGGGT----CCCTTBCCC
T ss_pred cceecHHHHHHHhhccccceeEecCCCcEEEEEEecCCCEEEEEEeccccCchHHHHHHHHHHHHHh----ccCCCccce
Confidence 4568899999999999999999999999999999888999999999865322 23468899999986 679999999
Q ss_pred eeEEecCCeEEEEEEecCCCCHHHHHhhcC----CCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCC
Q 001384 871 YGWCLDGSEKILVYEYMEGGSLEDIISDRT----RLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGK 946 (1088)
Q Consensus 871 ~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~----~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~ 946 (1088)
++++.++...++||||+++|+|.++++... .+++..++.++.|++.||+|||+++.++|+||||||+||+++.++.
T Consensus 93 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~ivH~Dlkp~Nil~~~~~~ 172 (326)
T 3uim_A 93 RGFCMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFE 172 (326)
T ss_dssp CEEECCSSCCEEEEECCTTCBHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHHHHHHSSSSCEECCCCSGGGEEECTTCC
T ss_pred EEEEecCCceEEEEEeccCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeCCCchhhEEECCCCC
Confidence 999999999999999999999999997654 3999999999999999999999987778999999999999999999
Q ss_pred EEEeecccceeecCCCCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCC------chhHHHHH
Q 001384 947 ALVTDFGLARVVSAGDSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGG------EECLVEWG 1020 (1088)
Q Consensus 947 ~kl~Dfg~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~------~~~~~~~~ 1020 (1088)
+||+|||+++..............||+.|+|||++.+..++.++||||+|+++|||++|+.||... .....+|.
T Consensus 173 ~kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~ 252 (326)
T 3uim_A 173 AVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWV 252 (326)
T ss_dssp EEECCCSSCEECCSSSSCEECCCCSCGGGCCHHHHHHSEECHHHHHHHHHHHHHHHHHCCCSBCHHHHTTTSCSBHHHHH
T ss_pred EEeccCccccccCcccccccccccCCcCccCHHHhccCCCCccccchhHHHHHHHHHhCCCcccccccccccchhHHHHH
Confidence 999999999987655555555667999999999998888999999999999999999999999621 12344444
Q ss_pred HhhhccCCCCCCccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhh
Q 001384 1021 RRVMGYGRHGPGRAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKI 1083 (1088)
Q Consensus 1021 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i 1083 (1088)
.... .........+.... ..........+.+++.+|++.||.+||+++||++.|++.
T Consensus 253 ~~~~---~~~~~~~~~~~~~~---~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~~ 309 (326)
T 3uim_A 253 KGLL---KEKKLEALVDVDLQ---GNYKDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLEGD 309 (326)
T ss_dssp TTTT---SSCCSTTSSCTTCT---TSCCHHHHHHHHHHHHHHTCSCGGGSCCHHHHHHHHHTS
T ss_pred HHHh---hchhhhhhcChhhc---cccCHHHHHHHHHHHHHHhCcCCccCCCHHHHHHHhcCc
Confidence 3332 11222222222222 223567788999999999999999999999999999864
No 45
>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*
Probab=100.00 E-value=1.7e-41 Score=382.77 Aligned_cols=280 Identities=38% Similarity=0.616 Sum_probs=229.6
Q ss_pred ccCHHHHHHHcCCCCccceecccCceEEEEEEeCCCcEEEEEEccccCccchHHHHHHHHHHhCCCCCCCCCceeEEeeE
Q 001384 794 AFTYSDILKATGKFSEDRIIGKGGFGTVYRGVLPDGREVAVKKLQREGLEGEREFRAEMEVLSGNGFGWPHPNLVTLYGW 873 (1088)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~~LG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~ 873 (1088)
.+++.++...+++|++.+.||+|+||.||+|++++++.||||++........+.+.+|+++++. ++||||++++++
T Consensus 28 ~~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~----l~h~~iv~~~~~ 103 (321)
T 2qkw_B 28 RVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSF----CRHPHLVSLIGF 103 (321)
T ss_dssp --CCSCCCCCCCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSCCSSHHHHHHHHHHGGGS----CCCTTBCCEEEE
T ss_pred eecHHHHHHHHhccCccceeecCCCeeEEEEEECCCCEEEEEEecccChHHHHHHHHHHHHHHh----CCCCCEeeEEEE
Confidence 3445556667899999999999999999999988899999999987655566789999999986 679999999999
Q ss_pred EecCCeEEEEEEecCCCCHHHHHhhcC----CCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEE
Q 001384 874 CLDGSEKILVYEYMEGGSLEDIISDRT----RLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALV 949 (1088)
Q Consensus 874 ~~~~~~~~lv~e~~~~gsL~~~l~~~~----~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl 949 (1088)
+.+++..++||||+++|+|.+++.... .+++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+||
T Consensus 104 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kl 180 (321)
T 2qkw_B 104 CDERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTR---AIIHRDVKSINILLDENFVPKI 180 (321)
T ss_dssp CCCTTCCEEEEECCTTCBTGGGSSSSCCCSCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCSTTEEECTTCCEEE
T ss_pred EcCCCeEEEEEEcCCCCcHHHHHhccCCCccccCHHHHHHHHHHHHHHHHHhcCC---CeecCCCCHHHEEECCCCCEEE
Confidence 999999999999999999999996543 589999999999999999999999 9999999999999999999999
Q ss_pred eecccceeecCCC-CcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCch----hHHHHHHhhh
Q 001384 950 TDFGLARVVSAGD-SHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEE----CLVEWGRRVM 1024 (1088)
Q Consensus 950 ~Dfg~a~~~~~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~----~~~~~~~~~~ 1024 (1088)
+|||+++...... ........||+.|+|||++.+..++.++||||||+++|||++|+.||....+ ....|.....
T Consensus 181 ~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~ 260 (321)
T 2qkw_B 181 TDFGISKKGTELDQTHLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESH 260 (321)
T ss_dssp CCCTTCEECSSSSCCCCBCCCEEETTTCCHHHHHHCBCCTHHHHHHHHHHHHHHHHCCTTCSCSSSSSCCCHHHHTHHHH
T ss_pred eecccccccccccccccccccCCCccccCHHHhcCCCCCcccchHhHHHHHHHHHhCCCcccccCcHHHHHHHHHhhhcc
Confidence 9999998754322 2223445689999999998888999999999999999999999999976532 2334433322
Q ss_pred ccCCCCCCccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhhCCC
Q 001384 1025 GYGRHGPGRAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKILPH 1086 (1088)
Q Consensus 1025 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i~~~ 1086 (1088)
.. .......+... ...........+.+++.+|++.||++||+++|+++.|+++++.
T Consensus 261 ~~---~~~~~~~~~~~---~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~l~~ 316 (321)
T 2qkw_B 261 NN---GQLEQIVDPNL---ADKIRPESLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYALRL 316 (321)
T ss_dssp TT---TCCCSSSSSSC---TTCSCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHS
T ss_pred cc---ccHHHhcChhh---ccccCHHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHhhc
Confidence 11 11112222111 1123567788999999999999999999999999999998654
No 46
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1e-40 Score=374.05 Aligned_cols=296 Identities=30% Similarity=0.480 Sum_probs=204.6
Q ss_pred CCchhhHHHHHHHHhhcccCCCCCcccccccCCCCCCcc--cCCceeCCCC--ceeEEeccccccccc--cccccccCCc
Q 001384 30 DSLETDREVLSNLRSFLENNNPVNEGHYMQWNQSSSPCE--WPGIICSPDK--ARVNGLNLTDWNISG--DIFNNFSALT 103 (1088)
Q Consensus 30 ~~~~~d~~~l~~~~~~~~~~~~~~~~~~~sW~~~~~~C~--W~gv~C~~~~--~~v~~L~L~~~~l~~--~~~~~l~~l~ 103 (1088)
.|.++|++||++||+++.+ +. .+++|+.+++||. |.||+|+... ++|+.|+|++++++| .+++.+++++
T Consensus 2 ~c~~~~~~aL~~~k~~~~~----~~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~ 76 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGN----PT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLP 76 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTC----CG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCT
T ss_pred CCCHHHHHHHHHHHHhcCC----cc-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCC
Confidence 3678899999999999953 22 6899998889999 9999998655 788888888888888 7777888888
Q ss_pred cCCeeeCCC-CCCCCCcCccCCCCCCCcEEECccccccCcccCCCCCCCceeecccccccccccCchhhhcccceEEecc
Q 001384 104 QLSYLDLSR-NTFSGSIPDDLSSCRSLKYLNLSHNILSGDLNLSGLRSLEILDLSVNRIHGEISFSFPAICEKLVVANLS 182 (1088)
Q Consensus 104 ~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~L~ 182 (1088)
+|++|+|++ |.+++.+|..|+++++|++|+|++|.+++
T Consensus 77 ~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~----------------------------------------- 115 (313)
T 1ogq_A 77 YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG----------------------------------------- 115 (313)
T ss_dssp TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEE-----------------------------------------
T ss_pred CCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCC-----------------------------------------
Confidence 888888884 77777777766666666655555543331
Q ss_pred CccCCCCCCccccCCCCCcEEEccCccccccccccCcccceecccCcccccccccccccCCCccCEEEcCCCcccccCcc
Q 001384 183 LNNLTGRIDTCFDGCLNLRYLDLSSNNFRGNIWNGLAQLVEFSVSENVLSGVVSSSVFKENCSLEIFDLSENEFIGDFPG 262 (1088)
Q Consensus 183 ~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~ 262 (1088)
.+|..|.++++|++|+| ++|++++.+|.
T Consensus 116 ------~~p~~~~~l~~L~~L~L----------------------------------------------s~N~l~~~~p~ 143 (313)
T 1ogq_A 116 ------AIPDFLSQIKTLVTLDF----------------------------------------------SYNALSGTLPP 143 (313)
T ss_dssp ------ECCGGGGGCTTCCEEEC----------------------------------------------CSSEEESCCCG
T ss_pred ------cCCHHHhCCCCCCEEeC----------------------------------------------CCCccCCcCCh
Confidence 11222233333333333 33333334455
Q ss_pred cccCCCCCcEEEccCccccCCCccccCCCC-CCCEEeCCCCcCCccCcccccCCCCCcEEEcCCCcCCCchhHhhhcccc
Q 001384 263 EVSNCRNLVVLNLFGNNFSGPIPAEIGSIS-GLEALFLGKNNFLSVIPESLLNLSKLEVLDLSSNNFGGEVQKIFGRFTQ 341 (1088)
Q Consensus 263 ~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 341 (1088)
.+.++++|++|+|++|++++.+|..++.++ +|+.|+|++|++++.+|..+..++
T Consensus 144 ~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~------------------------- 198 (313)
T 1ogq_A 144 SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN------------------------- 198 (313)
T ss_dssp GGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-------------------------
T ss_pred HHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-------------------------
Confidence 555556666666666666555555555544 455555555444444444443332
Q ss_pred cceeecCcCcccCCCCCccccCCCCcCEEEccCCccCCCCCccccCCcCcceeeccccccCCcCCcccCCCCCCcEEEcc
Q 001384 342 VKILALHSNSYIDGMNSSGILKLPNISRLDLSHNNFTGPLPVEISQMRSLKFLILAHNRFNGSIPAVYGNMPNLQTLDLS 421 (1088)
Q Consensus 342 L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 421 (1088)
|++|+|++|.+++..|..+..+++|+.|+|++|++++.+|. +..+++|++|+|+
T Consensus 199 -------------------------L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls 252 (313)
T 1ogq_A 199 -------------------------LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLR 252 (313)
T ss_dssp -------------------------CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECC
T ss_pred -------------------------ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECc
Confidence 55566666666666666777777777777777777755555 7778888888888
Q ss_pred CCcCCCCCCccccCCCCCcEEEccccccccCCCccccCCCCCCeEEccCCc-Ccc
Q 001384 422 FNELTGPIPPSIGNLTSLLWLMLANNSLSGEIPGEIGNCTSLLWLNLSNNK-LSG 475 (1088)
Q Consensus 422 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~-l~g 475 (1088)
+|++++.+|.+++++++|++|+|++|+++|.+|.. +++++|+.|++++|+ +.|
T Consensus 253 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 253 NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp SSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred CCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence 88888888888888888888999988888888876 888888999999888 554
No 47
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.5e-39 Score=403.17 Aligned_cols=480 Identities=21% Similarity=0.221 Sum_probs=328.8
Q ss_pred ceeEEeccccccccccccccccCCccCCeeeCCCCCCCCCcCccCCCCCCCcEEECccccccCcc--cCCCCCCCceeec
Q 001384 79 ARVNGLNLTDWNISGDIFNNFSALTQLSYLDLSRNTFSGSIPDDLSSCRSLKYLNLSHNILSGDL--NLSGLRSLEILDL 156 (1088)
Q Consensus 79 ~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L 156 (1088)
..++.|+|++|.|++..+.+|+++++|++|||++|+|++..|.+|+++++|++|+|++|+|++.. .|.++++|++|+|
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 36889999999999988889999999999999999999877889999999999999999999754 5899999999999
Q ss_pred ccccccccccCchhhhcccceEEeccCccCCCC-CCccccCCCCCcEEEccCccccccccccCc---cc----ceecccC
Q 001384 157 SVNRIHGEISFSFPAICEKLVVANLSLNNLTGR-IDTCFDGCLNLRYLDLSSNNFRGNIWNGLA---QL----VEFSVSE 228 (1088)
Q Consensus 157 s~N~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~---~L----~~L~L~~ 228 (1088)
++|++++..+..| ..+++|++|+|++|++++. .|..+..+++|++|+|++|++++..+..+. ++ ..++++.
T Consensus 132 s~N~l~~l~~~~~-~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~ 210 (635)
T 4g8a_A 132 VETNLASLENFPI-GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 210 (635)
T ss_dssp TTSCCCCSTTCCC-TTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred CCCcCCCCChhhh-hcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhccc
Confidence 9999997665555 4568999999999999874 578899999999999999999875544433 22 3577888
Q ss_pred cccccccccccccCCCccCEEEcCCCcccc-cCcccccCCCCCcEEEccCcccc------CCCc----------------
Q 001384 229 NVLSGVVSSSVFKENCSLEIFDLSENEFIG-DFPGEVSNCRNLVVLNLFGNNFS------GPIP---------------- 285 (1088)
Q Consensus 229 n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~N~l~------~~~p---------------- 285 (1088)
|.++.. +...+.. ..++.+++++|.... ..+..+..+..++...+..+... ....
T Consensus 211 n~l~~i-~~~~~~~-~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~ 288 (635)
T 4g8a_A 211 NPMNFI-QPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 288 (635)
T ss_dssp CCCCEE-CTTTTTT-CEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEE
T ss_pred Cccccc-Ccccccc-hhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhh
Confidence 888753 3344433 356778888775542 22344555555555554332211 1111
Q ss_pred -----------cccCCCCCCCEEeCCCCcCCccCcccccCCCCCcEEEcCCCcCCCchhHhhhcccccceeecCcCcccC
Q 001384 286 -----------AEIGSISGLEALFLGKNNFLSVIPESLLNLSKLEVLDLSSNNFGGEVQKIFGRFTQVKILALHSNSYID 354 (1088)
Q Consensus 286 -----------~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~ 354 (1088)
..+..+.+++.+.+.+|.+... ..+....+|+.|++.+|.+.+..+. .+..|+.+.+..|....
T Consensus 289 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~ 363 (635)
T 4g8a_A 289 AYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGN 363 (635)
T ss_dssp ECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCCC---BCTTCCEEEEESCCSCC
T ss_pred hhhcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCcc---cchhhhhcccccccCCC
Confidence 2223334455555555544432 2233444555555555555444332 23444555555544322
Q ss_pred CCCCccccCCCCcCEEEccCCccCC--CCCccccCCcCcceeeccccccCCcCCcccCCCCCCcEEEccCCcCCCCCC-c
Q 001384 355 GMNSSGILKLPNISRLDLSHNNFTG--PLPVEISQMRSLKFLILAHNRFNGSIPAVYGNMPNLQTLDLSFNELTGPIP-P 431 (1088)
Q Consensus 355 ~~~~~~~~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~ 431 (1088)
. .....+++|+.|++++|.+.. ..+..+..+.+|+.|++..|.+. .++..+..+++|+.+++++|+.....+ .
T Consensus 364 ~---~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~ 439 (635)
T 4g8a_A 364 A---FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFS 439 (635)
T ss_dssp B---CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSCCTTCTTCCEEECTTSEEESTTSSC
T ss_pred C---cccccccccccchhhccccccccccccchhhhhhhhhhhccccccc-cccccccccccccchhhhhcccccccccc
Confidence 1 122345556666666665532 23444445556666666666555 344445556666666666555443332 2
Q ss_pred cccCCCCCcEEEccccccccCCCccccCCCCCCeEEccCCcCccC-CCchhhccCCCCCccccccccCCcccccCCcccc
Q 001384 432 SIGNLTSLLWLMLANNSLSGEIPGEIGNCTSLLWLNLSNNKLSGN-IPPEVMTIGRNARPTFEANQRNGERTIAGSSECL 510 (1088)
Q Consensus 432 ~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~-ip~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~ 510 (1088)
.+.++++++.++++.|.+.+..|..+..+++|++|+|++|++.+. +|..+.
T Consensus 440 ~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~---------------------------- 491 (635)
T 4g8a_A 440 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT---------------------------- 491 (635)
T ss_dssp TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCT----------------------------
T ss_pred ccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhh----------------------------
Confidence 345556666666666666655555566666666666666654322 121111
Q ss_pred ccccccCCCCCCCcceeeehhccccchhhhhcccCCcccccccCCCcccceeeeceEEccCCccccccCcccccCCCccE
Q 001384 511 SMKRWIPADYPPFSFVYTILTRKSCRSLWDRLLKGTGIFPVCLPGLASRTFQITGYLQLSGNQLSGELSPDIGKLQNFSM 590 (1088)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~l~~L~l~~N~l~g~~p~~~~~l~~L~~ 590 (1088)
.+..+++|+|++|+|++..|..++++++|++
T Consensus 492 -------------------------------------------------~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~ 522 (635)
T 4g8a_A 492 -------------------------------------------------ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 522 (635)
T ss_dssp -------------------------------------------------TCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred -------------------------------------------------hccccCEEECCCCccCCcChHHHcCCCCCCE
Confidence 1223578999999999999999999999999
Q ss_pred EeccccccccCCCCcccCc-cceEEEccCCcccccCCccccCC-ccCcEEEccccccCC
Q 001384 591 VHLGFNQFDGKLPSQFDQL-PLIVLNLTRNNFSGEIPSEFGNI-KCLQNLDLSYNNFSG 647 (1088)
Q Consensus 591 L~l~~N~l~g~~p~~~~~l-~l~~l~l~~N~l~~~~p~~~~~l-~~L~~L~l~~N~l~g 647 (1088)
|+|++|+|++..|..|+.+ .|++|+|++|+|++..|..|.++ ++|+.|+|++|+++-
T Consensus 523 L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 523 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp EECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred EECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 9999999998888899988 69999999999999999999998 689999999999984
No 48
>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*
Probab=100.00 E-value=6.6e-40 Score=364.93 Aligned_cols=250 Identities=27% Similarity=0.411 Sum_probs=210.7
Q ss_pred cCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeEEE
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGLEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEKIL 882 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~~l 882 (1088)
.++|++.+.||+|+||+||+|.+. +++.||||++........+.+.+|+.+++. ++||||+++++++..++..++
T Consensus 19 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~E~~~l~~----l~hp~iv~~~~~~~~~~~~~l 94 (297)
T 3fxz_A 19 KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRE----NKNPNIVNYLDSYLVGDELWV 94 (297)
T ss_dssp GGTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHH----CCCTTBCCEEEEEEETTEEEE
T ss_pred hhceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeecccccHHHHHHHHHHHHhc----CCCCCCCeEeEEEEECCEEEE
Confidence 457999999999999999999964 789999999987655667788999999987 679999999999999999999
Q ss_pred EEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccceeecCCC
Q 001384 883 VYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARVVSAGD 962 (1088)
Q Consensus 883 v~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~~~~~ 962 (1088)
||||+++|+|.++++.. .+++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||++.......
T Consensus 95 v~e~~~~~~L~~~~~~~-~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~ 170 (297)
T 3fxz_A 95 VMEYLAGGSLTDVVTET-CMDEGQIAAVCRECLQALEFLHSN---QVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQ 170 (297)
T ss_dssp EEECCTTCBHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECCSTT
T ss_pred EEECCCCCCHHHHHhhc-CCCHHHHHHHHHHHHHHHHHHHhC---CceeCCCCHHHEEECCCCCEEEeeCCCceecCCcc
Confidence 99999999999999765 589999999999999999999999 99999999999999999999999999998765433
Q ss_pred CcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCCCCCccccchhhcC
Q 001384 963 SHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRHGPGRAVIPVVLLG 1042 (1088)
Q Consensus 963 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1042 (1088)
. ......||+.|+|||++.+..++.++||||+|+++|||++|+.||.+.......+.........
T Consensus 171 ~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~-------------- 235 (297)
T 3fxz_A 171 S-KRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNGTPE-------------- 235 (297)
T ss_dssp C-CBCCCCSCGGGCCHHHHHCSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHHCSCC--------------
T ss_pred c-ccCCccCCcCccChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCC--------------
Confidence 2 3345679999999999999999999999999999999999999998765422222111110000
Q ss_pred CCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1043 SGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1043 ~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
...+......+.+++.+|++.||++||+++|+++
T Consensus 236 --~~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~ 269 (297)
T 3fxz_A 236 --LQNPEKLSAIFRDFLNRCLEMDVEKRGSAKELLQ 269 (297)
T ss_dssp --CSCGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred --CCCccccCHHHHHHHHHHccCChhHCcCHHHHhh
Confidence 0112233456888999999999999999999976
No 49
>3zgw_A Maternal embryonic leucine zipper kinase; transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=100.00 E-value=2.7e-40 Score=374.50 Aligned_cols=250 Identities=24% Similarity=0.333 Sum_probs=200.5
Q ss_pred HcCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCcc-chHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeE
Q 001384 803 ATGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGLE-GEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEK 880 (1088)
Q Consensus 803 ~~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~-~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~ 880 (1088)
..++|++.+.||+|+||+||+|++. +|+.||||++...... ....+.+|+++++. ++||||+++++++.+.+..
T Consensus 8 l~~~y~i~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~Ei~~l~~----l~hpnIv~l~~~~~~~~~~ 83 (347)
T 3zgw_A 8 LLKYYELHETIGTGGFAKVKLACHILTGEMVAIKIMDKNTLGSDLPRIKTEIEALKN----LRHQHICQLYHVLETANKI 83 (347)
T ss_dssp TTTTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESSCC---CCHHHHHHHHHHT----CCCTTBCCEEEEEECSSEE
T ss_pred HhcCeEEEEEEEcCCCeEEEEEEECCCCCEEEEEEEEccccchHHHHHHHHHHHHHh----CCCCCEeeEEEEEEeCCEE
Confidence 4578999999999999999999974 7899999999765422 23568899999997 6799999999999999999
Q ss_pred EEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccceeecC
Q 001384 881 ILVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARVVSA 960 (1088)
Q Consensus 881 ~lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~~~ 960 (1088)
++||||+++|+|.+++....++++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||++.....
T Consensus 84 ~lv~E~~~gg~L~~~l~~~~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDlkp~NIll~~~~~~kL~DFG~a~~~~~ 160 (347)
T 3zgw_A 84 FMVLEYCPGGELFDYIISQDRLSEEETRVVFRQIVSAVAYVHSQ---GYAHRDLKPENLLFDEYHKLKLIDFGLCAKPKG 160 (347)
T ss_dssp EEEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBC---
T ss_pred EEEEeCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCccHHHEEEcCCCCEEEEeccCcccccC
Confidence 99999999999999998888999999999999999999999999 999999999999999999999999999987654
Q ss_pred CCCcccccccccccccCccccCCCCC-CcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCCCCCccccchh
Q 001384 961 GDSHVSTTIAGTVGYVAPEYGQTWQA-TTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRHGPGRAVIPVV 1039 (1088)
Q Consensus 961 ~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1039 (1088)
..........||+.|+|||++.+..+ +.++||||+||++|+|++|+.||.+.... +....+.....
T Consensus 161 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~Pf~~~~~~--~~~~~i~~~~~----------- 227 (347)
T 3zgw_A 161 NKDYHLQTCCGSLAYAAPELIQGKSYLGSEADVWSMGILLYVLMCGFLPFDDDNVM--ALYKKIMRGKY----------- 227 (347)
T ss_dssp -----------CGGGCCHHHHTTC---CCHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHHTCC-----------
T ss_pred CCCccccccCCccCccCHHHHcCCCCCCcHhHHHHHHHHHHHHHHCCCCCCCCCHH--HHHHHHHcCCC-----------
Confidence 43334455689999999999887775 89999999999999999999999875432 22222221100
Q ss_pred hcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1040 LLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1040 ~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
..+......+.+++.+|++.||++|||++|+++
T Consensus 228 ------~~p~~~s~~~~~li~~~L~~dP~~Rps~~eil~ 260 (347)
T 3zgw_A 228 ------DVPKWLSPSSILLLQQMLQVDPKKRISMKNLLN 260 (347)
T ss_dssp ------CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred ------CCCCCCCHHHHHHHHHHcccCHhHCcCHHHHhc
Confidence 001122356778999999999999999999986
No 50
>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}
Probab=100.00 E-value=6.6e-40 Score=367.77 Aligned_cols=258 Identities=26% Similarity=0.414 Sum_probs=211.3
Q ss_pred CCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeEEEE
Q 001384 805 GKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGLEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEKILV 883 (1088)
Q Consensus 805 ~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~~lv 883 (1088)
++|++.+.||+|+||+||+|.+. +++.||+|++........+.+.+|++++++ ++||||+++++++.++...++|
T Consensus 10 ~~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~----l~hp~iv~~~~~~~~~~~~~lv 85 (310)
T 3s95_A 10 SDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRC----LEHPNVLKFIGVLYKDKRLNFI 85 (310)
T ss_dssp GGEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCCCHHHHHHHHHHHHHHTT----CCCTTBCCEEEEEEETTEEEEE
T ss_pred hHeeccceecCCCCEEEEEEEECCCCcEEEEEEeccCCHHHHHHHHHHHHHHHh----CCCcCcccEEEEEecCCeeEEE
Confidence 56888999999999999999976 689999999877655666789999999987 6799999999999999999999
Q ss_pred EEecCCCCHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccceeecCCC
Q 001384 884 YEYMEGGSLEDIISD-RTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARVVSAGD 962 (1088)
Q Consensus 884 ~e~~~~gsL~~~l~~-~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~~~~~ 962 (1088)
|||+++|+|.++++. ...+++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++......
T Consensus 86 ~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~ 162 (310)
T 3s95_A 86 TEYIKGGTLRGIIKSMDSQYPWSQRVSFAKDIASGMAYLHSM---NIIHRDLNSHNCLVRENKNVVVADFGLARLMVDEK 162 (310)
T ss_dssp EECCTTCBHHHHHHHCCTTSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSTTSEEECTTSCEEECCCTTCEECC---
T ss_pred EEecCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCCcCeEEECCCCCEEEeecccceeccccc
Confidence 999999999999987 56799999999999999999999999 99999999999999999999999999998765332
Q ss_pred Ccc-------------cccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCC
Q 001384 963 SHV-------------STTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRH 1029 (1088)
Q Consensus 963 ~~~-------------~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~ 1029 (1088)
... .....||+.|+|||++.+..++.++||||||+++|||++|..||.........
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~~~~~~~~~~~~----------- 231 (310)
T 3s95_A 163 TQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMD----------- 231 (310)
T ss_dssp -----------------CCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHTCCSSTTTSCBCTT-----------
T ss_pred ccccccccccccccccccccCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHhcCCCCCcchhhhHHH-----------
Confidence 211 11457999999999999999999999999999999999999998754221000
Q ss_pred CCCccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhhCC
Q 001384 1030 GPGRAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKILP 1085 (1088)
Q Consensus 1030 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i~~ 1085 (1088)
............ .+...+..+.+++.+|++.||++||+++|+++.|+++.+
T Consensus 232 --~~~~~~~~~~~~---~~~~~~~~l~~li~~~l~~dP~~Rps~~~l~~~L~~l~~ 282 (310)
T 3s95_A 232 --FGLNVRGFLDRY---CPPNCPPSFFPITVRCCDLDPEKRPSFVKLEHWLETLRM 282 (310)
T ss_dssp --SSBCHHHHHHHT---CCTTCCTTHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred --Hhhhhhcccccc---CCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHH
Confidence 000000000000 012233468889999999999999999999999998753
No 51
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=3e-39 Score=380.51 Aligned_cols=323 Identities=22% Similarity=0.199 Sum_probs=253.7
Q ss_pred cccccccccCCccCCeeeCCCCCCCCCcCccCCCCCCCcEEECccccccCcccCCCCCCCceeecccccccccccCchhh
Q 001384 92 SGDIFNNFSALTQLSYLDLSRNTFSGSIPDDLSSCRSLKYLNLSHNILSGDLNLSGLRSLEILDLSVNRIHGEISFSFPA 171 (1088)
Q Consensus 92 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~ 171 (1088)
.+..+..++++++|++|+|++|.|++. | .++.+++|++|+|++|.+++. +++.+++|++|+|++|++++. + ..
T Consensus 31 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~L~~L~Ls~N~l~~~-~---~~ 103 (457)
T 3bz5_A 31 QATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-DLSQNTNLTYLACDSNKLTNL-D---VT 103 (457)
T ss_dssp CTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-CCTTCTTCSEEECCSSCCSCC-C---CT
T ss_pred CcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-ccccCCCCCEEECcCCCCcee-e---cC
Confidence 333445677778888888888888754 5 677888888888888888775 477788888888888888764 2 23
Q ss_pred hcccceEEeccCccCCCCCCccccCCCCCcEEEccCccccccccccCcccceecccCcccccccccccccCCCccCEEEc
Q 001384 172 ICEKLVVANLSLNNLTGRIDTCFDGCLNLRYLDLSSNNFRGNIWNGLAQLVEFSVSENVLSGVVSSSVFKENCSLEIFDL 251 (1088)
Q Consensus 172 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L 251 (1088)
.+++|++|++++|++++. + ++.+++|++|++++|++++..+..+++|++|++++|...+.+ .+..+++|++|++
T Consensus 104 ~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~l 177 (457)
T 3bz5_A 104 PLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKL---DVTPQTQLTTLDC 177 (457)
T ss_dssp TCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCC---CCTTCTTCCEEEC
T ss_pred CCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCccccc---ccccCCcCCEEEC
Confidence 457788888888888874 2 778888888888888887755667778888888888554444 4677889999999
Q ss_pred CCCcccccCcccccCCCCCcEEEccCccccCCCccccCCCCCCCEEeCCCCcCCccCcccccCCCCCcEEEcCCCcCCCc
Q 001384 252 SENEFIGDFPGEVSNCRNLVVLNLFGNNFSGPIPAEIGSISGLEALFLGKNNFLSVIPESLLNLSKLEVLDLSSNNFGGE 331 (1088)
Q Consensus 252 s~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 331 (1088)
++|++++ +| +..+++|+.|++++|++++. .++.+++|+.|++++|++++ +| +..+++|++|++++|++++.
T Consensus 178 s~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~ 248 (457)
T 3bz5_A 178 SFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTEL 248 (457)
T ss_dssp CSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC
T ss_pred CCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCc
Confidence 9999886 45 78889999999999999864 48888999999999999988 55 88889999999999999886
Q ss_pred hhHhhhcccccceeecCcCcccCCCCCccccCCCCcCEEEccCCccCCCCCccccCCcCcceeeccccccCCcCCcccCC
Q 001384 332 VQKIFGRFTQVKILALHSNSYIDGMNSSGILKLPNISRLDLSHNNFTGPLPVEISQMRSLKFLILAHNRFNGSIPAVYGN 411 (1088)
Q Consensus 332 ~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~ 411 (1088)
+ ++.+++|+.|+++.| +|+.|++++|.+.+.+| ++.+++|+.|++++|.+.+.+|. .
T Consensus 249 ~---~~~l~~L~~L~l~~n---------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~ 305 (457)
T 3bz5_A 249 D---VSTLSKLTTLHCIQT---------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---Q 305 (457)
T ss_dssp C---CTTCTTCCEEECTTC---------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---T
T ss_pred C---HHHCCCCCEEeccCC---------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---C
Confidence 5 456777888887665 46788899998887776 56788999999999988877774 3
Q ss_pred CCCCcEEEccCCcCCCCCCccccCCCCCcEEEccccccccCCCccccCCCCCCeEEccCCcCcc
Q 001384 412 MPNLQTLDLSFNELTGPIPPSIGNLTSLLWLMLANNSLSGEIPGEIGNCTSLLWLNLSNNKLSG 475 (1088)
Q Consensus 412 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g 475 (1088)
.++|+.|++++| ++|++|++++|++++ ++ ++++++|+.|++++|+++|
T Consensus 306 ~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~-l~--l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 306 AAGITELDLSQN-------------PKLVYLYLNNTELTE-LD--VSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp TCCCSCCCCTTC-------------TTCCEEECTTCCCSC-CC--CTTCTTCSEEECCSSCCCB
T ss_pred CCcceEechhhc-------------ccCCEEECCCCcccc-cc--cccCCcCcEEECCCCCCCC
Confidence 456666666555 689999999999997 43 8999999999999999985
No 52
>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A
Probab=100.00 E-value=5.7e-40 Score=369.87 Aligned_cols=247 Identities=26% Similarity=0.376 Sum_probs=207.6
Q ss_pred cCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCc--cchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeE
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGL--EGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEK 880 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~ 880 (1088)
.++|++.+.||+|+||.||+|++. +|+.||||++..... ...+.+.+|+++++. ++||||+++++++..++..
T Consensus 14 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~----l~hpnIv~l~~~~~~~~~~ 89 (328)
T 3fe3_A 14 IGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKI----LNHPNIVKLFEVIETEKTL 89 (328)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHH----CCCTTBCCEEEEEECSSEE
T ss_pred cCCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHh----CCCCCEeeEEEEEEECCEE
Confidence 468999999999999999999974 799999999976532 234568899999987 6799999999999999999
Q ss_pred EEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccceeecC
Q 001384 881 ILVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARVVSA 960 (1088)
Q Consensus 881 ~lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~~~ 960 (1088)
|+||||+++|+|.+++...+++++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||++.....
T Consensus 90 ~lv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~al~~lH~~---~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~ 166 (328)
T 3fe3_A 90 YLIMEYASGGEVFDYLVAHGRMKEKEARSKFRQIVSAVQYCHQK---RIVHRDLKAENLLLDADMNIKIADFGFSNEFTV 166 (328)
T ss_dssp EEEECCCTTCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECSTTCCGGGSS
T ss_pred EEEEECCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CEeccCCCHHHEEEcCCCCEEEeeccCceecCC
Confidence 99999999999999998888999999999999999999999999 999999999999999999999999999976643
Q ss_pred CCCcccccccccccccCccccCCCCCC-cchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCCCCCccccchh
Q 001384 961 GDSHVSTTIAGTVGYVAPEYGQTWQAT-TKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRHGPGRAVIPVV 1039 (1088)
Q Consensus 961 ~~~~~~~~~~gt~~y~aPE~~~~~~~~-~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1039 (1088)
. .......||+.|+|||++.+..++ .++||||+||++|||++|+.||.+.... +..........
T Consensus 167 ~--~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~--~~~~~i~~~~~----------- 231 (328)
T 3fe3_A 167 G--GKLDAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLK--ELRERVLRGKY----------- 231 (328)
T ss_dssp S--CGGGTTSSSGGGCCHHHHHTCCCCSHHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHHCCC-----------
T ss_pred C--CccccccCCcceeCcccccCCCcCCchhhhhhhHHHHHHHHhCCCCCCCCCHH--HHHHHHHhCCC-----------
Confidence 3 234556799999999998887765 7999999999999999999999876432 22222211100
Q ss_pred hcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1040 LLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1040 ~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
..+.....++.+++.+|++.||.+|||++|+++
T Consensus 232 ------~~p~~~s~~~~~li~~~L~~dP~~R~t~~eil~ 264 (328)
T 3fe3_A 232 ------RIPFYMSTDCENLLKRFLVLNPIKRGTLEQIMK 264 (328)
T ss_dssp ------CCCTTSCHHHHHHHHHHCCSSTTTSCCHHHHTT
T ss_pred ------CCCCCCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 011123356788999999999999999999975
No 53
>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*
Probab=100.00 E-value=6.4e-40 Score=366.98 Aligned_cols=258 Identities=31% Similarity=0.445 Sum_probs=204.7
Q ss_pred cCCCCccceecccCceEEEEEEeCCCcEEEEEEccccCcc--chHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeEE
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLPDGREVAVKKLQREGLE--GEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEKI 881 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~--~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~~ 881 (1088)
.++|++.+.||+|+||+||+|++ +|+.||||++...... ..+.+.+|++++++ ++||||+++++++.+....+
T Consensus 36 ~~~y~i~~~lG~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~----l~hp~iv~~~~~~~~~~~~~ 110 (309)
T 3p86_A 36 WCDLNIKEKIGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMKR----LRHPNIVLFMGAVTQPPNLS 110 (309)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEE-TTEEEEEEEECCCCCSHHHHHHHHHHHHHHHH----CCCTTBCCEEEEECSTTCCE
T ss_pred hhHceeeeEeecCCCeEEEEEEE-CCCcEEEEEecCCCCCHHHHHHHHHHHHHHHh----CCCCCEeeEEEEEEECCceE
Confidence 46789999999999999999987 5889999999765432 23578899999997 67999999999999999999
Q ss_pred EEEEecCCCCHHHHHhhcCC---CCHHHHHHHHHHHHHHHHHHHhcCCCC--eEecCCCCCCEEEcCCCCEEEeecccce
Q 001384 882 LVYEYMEGGSLEDIISDRTR---LTWRRRLDIAIDVARALVFLHHECYPP--IVHRDVKASNVLLDKEGKALVTDFGLAR 956 (1088)
Q Consensus 882 lv~e~~~~gsL~~~l~~~~~---l~~~~~~~i~~qi~~~L~yLH~~~~~~--ivH~DLkp~NIll~~~~~~kl~Dfg~a~ 956 (1088)
+||||+++|+|.++++.... +++.+++.++.|++.||+|||++ + |+||||||+||+++.++.+||+|||+++
T Consensus 111 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~ 187 (309)
T 3p86_A 111 IVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNR---NPPIVHRNLKSPNLLVDKKYTVKVCDFGLSR 187 (309)
T ss_dssp EEEECCTTCBHHHHHHSTTHHHHSCHHHHHHHHHHHHHHHHHHHTS---SSCCCCTTCCGGGEEECTTCCEEECCCC---
T ss_pred EEEecCCCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHcC---CCCEECCCCChhhEEEeCCCcEEECCCCCCc
Confidence 99999999999999987653 99999999999999999999999 8 9999999999999999999999999997
Q ss_pred eecCCCCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCCCCCcccc
Q 001384 957 VVSAGDSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRHGPGRAVI 1036 (1088)
Q Consensus 957 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1036 (1088)
..... ........||+.|+|||++.+..++.++||||+|+++|||++|+.||............... ..
T Consensus 188 ~~~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~Pf~~~~~~~~~~~~~~~--~~-------- 256 (309)
T 3p86_A 188 LKAST-FLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLNPAQVVAAVGFK--CK-------- 256 (309)
T ss_dssp ---------------CCTTSCHHHHTTCCCCTTHHHHHHHHHHHHHHHCCCTTTTSCHHHHHHHHHHS--CC--------
T ss_pred ccccc-ccccccCCCCccccChhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhc--CC--------
Confidence 64322 22234567899999999999999999999999999999999999999876542221111111 00
Q ss_pred chhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhhCCCC
Q 001384 1037 PVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKILPHC 1087 (1088)
Q Consensus 1037 ~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i~~~~ 1087 (1088)
....+.....++.+++.+|++.||++||+++|+++.|+++++.+
T Consensus 257 -------~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~~ll~~L~~~~~~~ 300 (309)
T 3p86_A 257 -------RLEIPRNLNPQVAAIIEGCWTNEPWKRPSFATIMDLLRPLIKSA 300 (309)
T ss_dssp -------CCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHC--
T ss_pred -------CCCCCccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHhC
Confidence 00112233457889999999999999999999999999998753
No 54
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=4.9e-40 Score=386.92 Aligned_cols=343 Identities=21% Similarity=0.237 Sum_probs=249.9
Q ss_pred ceeEEeccccccccccccccccCCccCCeeeCCCCCCCCCcCccCCCCCCCcEEECccccccCcccCCCCCCCceeeccc
Q 001384 79 ARVNGLNLTDWNISGDIFNNFSALTQLSYLDLSRNTFSGSIPDDLSSCRSLKYLNLSHNILSGDLNLSGLRSLEILDLSV 158 (1088)
Q Consensus 79 ~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~ 158 (1088)
.++..|+++++++ |.+|++++++++|++|++++|.++|.+|..++++.+|+.+++++|.. .+|++|++++
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~---------~~l~~L~l~~ 80 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD---------RQAHELELNN 80 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH---------HTCSEEECTT
T ss_pred ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc---------cCCCEEEecC
Confidence 4677899999999 89999999999999999999999999999999999987777777643 4577788888
Q ss_pred ccccccccCchhhhcccceEEeccCccCCCCCCccccCCCCCcEEEccCccccccccccCcccceecccCcccccccccc
Q 001384 159 NRIHGEISFSFPAICEKLVVANLSLNNLTGRIDTCFDGCLNLRYLDLSSNNFRGNIWNGLAQLVEFSVSENVLSGVVSSS 238 (1088)
Q Consensus 159 N~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 238 (1088)
|.+++. |. ..++|++|++++|++++ +|.. +++|++|++++|++++ ++...++|++|++++|.+++ ++
T Consensus 81 ~~l~~l-p~----~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~~~~L~~L~L~~n~l~~-lp-- 147 (454)
T 1jl5_A 81 LGLSSL-PE----LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDLPPLLEYLGVSNNQLEK-LP-- 147 (454)
T ss_dssp SCCSCC-CS----CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSCCTTCCEEECCSSCCSS-CC--
T ss_pred CccccC-CC----CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCCCCCCCEEECcCCCCCC-Cc--
Confidence 877752 22 23578888888888887 4432 3678888888888775 22223688888888888886 44
Q ss_pred cccCCCccCEEEcCCCcccccCcccccCCCCCcEEEccCccccCCCccccCCCCCCCEEeCCCCcCCccCcccccCCCCC
Q 001384 239 VFKENCSLEIFDLSENEFIGDFPGEVSNCRNLVVLNLFGNNFSGPIPAEIGSISGLEALFLGKNNFLSVIPESLLNLSKL 318 (1088)
Q Consensus 239 ~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 318 (1088)
.|..+++|++|++++|++++ +|..+ ++|++|++++|++++ +| .++.+++|+.|++++|++++ +|... ++|
T Consensus 148 ~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L 217 (454)
T 1jl5_A 148 ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP---LSL 217 (454)
T ss_dssp CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC---TTC
T ss_pred ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc---Ccc
Confidence 48888999999999999885 56543 589999999999986 56 68999999999999999887 44433 589
Q ss_pred cEEEcCCCcCCCchhHhhhcccccceeecCcCcccCCCCCccccCCCCcCEEEccCCccCCCCCccccCCcCcceeeccc
Q 001384 319 EVLDLSSNNFGGEVQKIFGRFTQVKILALHSNSYIDGMNSSGILKLPNISRLDLSHNNFTGPLPVEISQMRSLKFLILAH 398 (1088)
Q Consensus 319 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~ 398 (1088)
++|++++|.++. +|. |+.+++|+.|++++|.+.. .+. .+++|+.|++++|++++ +|.. +++|++|++++
T Consensus 218 ~~L~l~~n~l~~-lp~-~~~l~~L~~L~l~~N~l~~-l~~----~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~ 286 (454)
T 1jl5_A 218 ESIVAGNNILEE-LPE-LQNLPFLTTIYADNNLLKT-LPD----LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSE 286 (454)
T ss_dssp CEEECCSSCCSS-CCC-CTTCTTCCEEECCSSCCSS-CCS----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCS
T ss_pred cEEECcCCcCCc-ccc-cCCCCCCCEEECCCCcCCc-ccc----cccccCEEECCCCcccc-cCcc---cCcCCEEECcC
Confidence 999999999984 443 8899999999999998654 221 24789999999999995 6654 37899999999
Q ss_pred cccCCcCCcccCCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEccccccccCCCccccCCCCCCeEEccCCcCccCCC
Q 001384 399 NRFNGSIPAVYGNMPNLQTLDLSFNELTGPIPPSIGNLTSLLWLMLANNSLSGEIPGEIGNCTSLLWLNLSNNKLSGNIP 478 (1088)
Q Consensus 399 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip 478 (1088)
|++++ +|.. .++|+.|++++|++++ ++.. .++|++|++++|++++ +|.. +++|++|++++|+++ .+|
T Consensus 287 N~l~~-l~~~---~~~L~~L~l~~N~l~~-i~~~---~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp 353 (454)
T 1jl5_A 287 NIFSG-LSEL---PPNLYYLNASSNEIRS-LCDL---PPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVP 353 (454)
T ss_dssp SCCSE-ESCC---CTTCCEEECCSSCCSE-ECCC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCC
T ss_pred CccCc-ccCc---CCcCCEEECcCCcCCc-ccCC---cCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-ccc
Confidence 99995 3432 2689999999999995 3321 2589999999999995 7765 588999999999887 344
No 55
>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A
Probab=100.00 E-value=5.5e-40 Score=377.02 Aligned_cols=258 Identities=28% Similarity=0.417 Sum_probs=211.3
Q ss_pred cCCCCccceecccCceEEEEEEeC--------CCcEEEEEEccccCcc-chHHHHHHHHHHhCCCCCCCCCceeEEeeEE
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLP--------DGREVAVKKLQREGLE-GEREFRAEMEVLSGNGFGWPHPNLVTLYGWC 874 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~--------~~~~vavK~~~~~~~~-~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~ 874 (1088)
.++|++.+.||+|+||.||+|++. ++..||||+++..... ..+.+.+|+++++++. +||||+++++++
T Consensus 80 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~---~hpnIv~~~~~~ 156 (370)
T 2psq_A 80 RDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIG---KHKNIINLLGAC 156 (370)
T ss_dssp GGGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHHHSC---CCTTBCCEEEEE
T ss_pred HHHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHHHHhc---CCCCEeeEEEEE
Confidence 357889999999999999999852 3457999999865332 3357889999999732 799999999999
Q ss_pred ecCCeEEEEEEecCCCCHHHHHhhcC----------------CCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCC
Q 001384 875 LDGSEKILVYEYMEGGSLEDIISDRT----------------RLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASN 938 (1088)
Q Consensus 875 ~~~~~~~lv~e~~~~gsL~~~l~~~~----------------~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~N 938 (1088)
.+++..|+||||+++|+|.++++... .+++.+++.++.||+.||+|||++ +|+||||||+|
T Consensus 157 ~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~N 233 (370)
T 2psq_A 157 TQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQ---KCIHRDLAARN 233 (370)
T ss_dssp CSSSSCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGG
T ss_pred ccCCCEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC---Ceeccccchhh
Confidence 99999999999999999999997643 479999999999999999999999 99999999999
Q ss_pred EEEcCCCCEEEeecccceeecCCCCc-ccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHh-CCcCCCCCchhH
Q 001384 939 VLLDKEGKALVTDFGLARVVSAGDSH-VSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELAT-GRRALEGGEECL 1016 (1088)
Q Consensus 939 Ill~~~~~~kl~Dfg~a~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~ellt-g~~p~~~~~~~~ 1016 (1088)
|+++.++.+||+|||+++........ ......+|+.|+|||++.+..++.++|||||||++|||++ |+.||.+.....
T Consensus 234 Ill~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~p~~~~~~~~ 313 (370)
T 2psq_A 234 VLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEE 313 (370)
T ss_dssp EEECTTCCEEECCCSSCEETTCCCTTCTTTTTTSCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGG
T ss_pred EEECCCCCEEEccccCCcccCcccceecccCCCcccceECHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCCCCCCHHH
Confidence 99999999999999999876543322 2334567889999999998899999999999999999999 999998754321
Q ss_pred HHHHHhhhccCCCCCCccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhhCC
Q 001384 1017 VEWGRRVMGYGRHGPGRAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKILP 1085 (1088)
Q Consensus 1017 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i~~ 1085 (1088)
. ..... .+.....+.....++.+++.+|++.||++||++.|+++.|++++.
T Consensus 314 ~--~~~~~----------------~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rpt~~ell~~L~~il~ 364 (370)
T 2psq_A 314 L--FKLLK----------------EGHRMDKPANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRILT 364 (370)
T ss_dssp H--HHHHH----------------TTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred H--HHHHh----------------cCCCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHH
Confidence 1 11111 000111123344678899999999999999999999999999864
No 56
>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*
Probab=100.00 E-value=5e-40 Score=360.53 Aligned_cols=257 Identities=27% Similarity=0.406 Sum_probs=214.4
Q ss_pred cCCCCccceecccCceEEEEEEeCCCcEEEEEEccccCccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeEEEE
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLPDGREVAVKKLQREGLEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEKILV 883 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~~lv 883 (1088)
.++|++.+.||+|+||.||+|.++++..||||++.... ...+++.+|++++.+ ++||||+++++++.++...++|
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~----l~h~~i~~~~~~~~~~~~~~lv 81 (268)
T 3sxs_A 7 REEITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEGS-MSEDEFFQEAQTMMK----LSHPKLVKFYGVCSKEYPIYIV 81 (268)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECBTT-BCHHHHHHHHHHHHH----CCCTTBCCEEEEECSSSSEEEE
T ss_pred hhheeeeeeeccCCCceEEEEEecCceeEEEEEeccCC-CcHHHHHHHHHHHHh----CCCCCEeeEEEEEccCCceEEE
Confidence 35788999999999999999999888899999998653 345678999999997 6799999999999999999999
Q ss_pred EEecCCCCHHHHHhhcC-CCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccceeecCCC
Q 001384 884 YEYMEGGSLEDIISDRT-RLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARVVSAGD 962 (1088)
Q Consensus 884 ~e~~~~gsL~~~l~~~~-~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~~~~~ 962 (1088)
|||+++++|.+++.... .+++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||.+.......
T Consensus 82 ~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~ 158 (268)
T 3sxs_A 82 TEYISNGCLLNYLRSHGKGLEPSQLLEMCYDVCEGMAFLESH---QFIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDDQ 158 (268)
T ss_dssp EECCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHT---TEEESSCSGGGEEECTTCCEEECCTTCEEECCTTC
T ss_pred EEccCCCcHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCcCcceEEECCCCCEEEccCccceecchhh
Confidence 99999999999997754 599999999999999999999999 99999999999999999999999999998765544
Q ss_pred CcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHh-CCcCCCCCchhHHHHHHhhhccCCCCCCccccchhhc
Q 001384 963 SHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELAT-GRRALEGGEECLVEWGRRVMGYGRHGPGRAVIPVVLL 1041 (1088)
Q Consensus 963 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1041 (1088)
........+|+.|+|||.+.+..++.++||||+|+++|+|++ |+.||......... ........
T Consensus 159 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~--~~~~~~~~------------- 223 (268)
T 3sxs_A 159 YVSSVGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLYTNSEVV--LKVSQGHR------------- 223 (268)
T ss_dssp EEECCSCCCCGGGCCHHHHHHSEEETTHHHHHHHHHHHHHHTTTCCTTTTSCHHHHH--HHHHTTCC-------------
T ss_pred hhcccCCCcCcccCCHHHHhccCCchhhhhHHHHHHHHHHHcCCCCCccccChHHHH--HHHHcCCC-------------
Confidence 333344556778999999988889999999999999999999 99999875442211 11110000
Q ss_pred CCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhhCCC
Q 001384 1042 GSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKILPH 1086 (1088)
Q Consensus 1042 ~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i~~~ 1086 (1088)
...+......+.+++.+|++.||++||+++|+++.|+++.+.
T Consensus 224 ---~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~~~ 265 (268)
T 3sxs_A 224 ---LYRPHLASDTIYQIMYSCWHELPEKRPTFQQLLSSIEPLREK 265 (268)
T ss_dssp ---CCCCTTSCHHHHHHHHHTTCSSGGGSCCHHHHHHHHGGGCC-
T ss_pred ---CCCCCcChHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhhc
Confidence 001112235688899999999999999999999999998754
No 57
>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=100.00 E-value=3e-40 Score=362.48 Aligned_cols=256 Identities=29% Similarity=0.435 Sum_probs=213.2
Q ss_pred CCCCccceecccCceEEEEEEeCCCcEEEEEEccccCccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeEEEEE
Q 001384 805 GKFSEDRIIGKGGFGTVYRGVLPDGREVAVKKLQREGLEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEKILVY 884 (1088)
Q Consensus 805 ~~~~~~~~LG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~~lv~ 884 (1088)
++|++.+.||+|+||.||+|++.+++.||+|++.... ...+++.+|++++++ ++||||+++++++.++...++||
T Consensus 10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~----l~h~~i~~~~~~~~~~~~~~lv~ 84 (269)
T 4hcu_A 10 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGA-MSEEDFIEEAEVMMK----LSHPKLVQLYGVCLEQAPICLVF 84 (269)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTEEEEEEEECTTS-BCHHHHHHHHHHHHT----CCCTTBCCEEEEECSSSSEEEEE
T ss_pred hhceeeheecCCCccEEEEEEecCCCeEEEEEecccc-cCHHHHHHHHHHHHh----CCCCCEeeEEEEEecCCceEEEE
Confidence 4688899999999999999999888999999998653 345679999999997 67999999999999999999999
Q ss_pred EecCCCCHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccceeecCCCC
Q 001384 885 EYMEGGSLEDIISDR-TRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARVVSAGDS 963 (1088)
Q Consensus 885 e~~~~gsL~~~l~~~-~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~~~~~~ 963 (1088)
||+++++|.++++.. ..+++..++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++.......
T Consensus 85 e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~ 161 (269)
T 4hcu_A 85 EFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEA---CVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQY 161 (269)
T ss_dssp ECCTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECGGGCEEECCTTGGGGBCCHHH
T ss_pred EeCCCCcHHHHHHhcCcccCHHHHHHHHHHHHHHHHHHHhC---CeecCCcchheEEEcCCCCEEecccccccccccccc
Confidence 999999999999654 4689999999999999999999999 999999999999999999999999999986543322
Q ss_pred cccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHh-CCcCCCCCchhHHHHHHhhhccCCCCCCccccchhhcC
Q 001384 964 HVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELAT-GRRALEGGEECLVEWGRRVMGYGRHGPGRAVIPVVLLG 1042 (1088)
Q Consensus 964 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1042 (1088)
.......+|..|+|||.+.+..++.++||||+|+++|+|++ |+.||....... .........
T Consensus 162 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~~g~~p~~~~~~~~--~~~~~~~~~--------------- 224 (269)
T 4hcu_A 162 TSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSE--VVEDISTGF--------------- 224 (269)
T ss_dssp HSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHH--HHHHHHTTC---------------
T ss_pred ccccCcccccccCCHHHhcCCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCHHH--HHHHHhcCc---------------
Confidence 23334556788999999988899999999999999999999 999998754421 111111000
Q ss_pred CCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhhCCC
Q 001384 1043 SGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKILPH 1086 (1088)
Q Consensus 1043 ~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i~~~ 1086 (1088)
....+......+.+++.+|++.||++||+++|+++.|+++.+.
T Consensus 225 -~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~l~~l~~~ 267 (269)
T 4hcu_A 225 -RLYKPRLASTHVYQIMNHCWRERPEDRPAFSRLLRQLAEIAES 267 (269)
T ss_dssp -CCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred -cCCCCCcCCHHHHHHHHHHccCCcccCcCHHHHHHHHHHHHHc
Confidence 0011122345688899999999999999999999999998754
No 58
>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}
Probab=100.00 E-value=9e-40 Score=363.40 Aligned_cols=262 Identities=23% Similarity=0.337 Sum_probs=210.1
Q ss_pred cCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCcc---chHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCe
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGLE---GEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSE 879 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~---~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~ 879 (1088)
.++|++.+.||+|+||.||+|++. +++.||+|++...... ..+.+.+|+.++.+ ++||||+++++++.+++.
T Consensus 10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~----l~hp~iv~~~~~~~~~~~ 85 (294)
T 4eqm_A 10 NERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQ----LSHQNIVSMIDVDEEDDC 85 (294)
T ss_dssp ETTEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTT----CCBTTBCCEEEEEECSSE
T ss_pred hccEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhc----CCCCCCceEEEeeeeCCe
Confidence 468999999999999999999975 6899999998654322 23568899999986 679999999999999999
Q ss_pred EEEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccceeec
Q 001384 880 KILVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARVVS 959 (1088)
Q Consensus 880 ~~lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~~ 959 (1088)
.++||||+++++|.++++...++++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++...
T Consensus 86 ~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~ 162 (294)
T 4eqm_A 86 YYLVMEYIEGPTLSEYIESHGPLSVDTAINFTNQILDGIKHAHDM---RIVHRDIKPQNILIDSNKTLKIFDFGIAKALS 162 (294)
T ss_dssp EEEEEECCCSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCSSSTTC-
T ss_pred EEEEEeCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEEEeCCCccccc
Confidence 999999999999999999888999999999999999999999999 99999999999999999999999999998765
Q ss_pred CCCCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCCCCCccccchh
Q 001384 960 AGDSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRHGPGRAVIPVV 1039 (1088)
Q Consensus 960 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1039 (1088)
...........||+.|+|||.+.+..++.++||||+|+++|||++|+.||.+........ ....... . .....
T Consensus 163 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~~~~--~~~~~~~----~-~~~~~ 235 (294)
T 4eqm_A 163 ETSLTQTNHVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFNGETAVSIAI--KHIQDSV----P-NVTTD 235 (294)
T ss_dssp ------------CCSSCCHHHHHTCCCCTTHHHHHHHHHHHHHHHSSCSSCSSCHHHHHH--HHHSSCC----C-CHHHH
T ss_pred cccccccCccccCccccCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHHHH--HHhhccC----C-Ccchh
Confidence 443333445679999999999999899999999999999999999999998765422211 1110000 0 00000
Q ss_pred hcCCCccccHHHHHHHHHHHhhhcccCCCCCC-CHHHHHHHHHhhCCC
Q 001384 1040 LLGSGLAEGAEEMSELLRIGVRCTAEAPNARP-NVKEVLAMLIKILPH 1086 (1088)
Q Consensus 1040 ~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RP-s~~eil~~L~~i~~~ 1086 (1088)
.....+..+.+++.+|++.||++|| +++++.+.|++++..
T Consensus 236 -------~~~~~~~~l~~li~~~l~~dp~~R~~~~~~l~~~l~~~~~~ 276 (294)
T 4eqm_A 236 -------VRKDIPQSLSNVILRATEKDKANRYKTIQEMKDDLSSVLHE 276 (294)
T ss_dssp -------SCTTSCHHHHHHHHHHSCSSGGGSCSSHHHHHHHHHTSSSS
T ss_pred -------cccCCCHHHHHHHHHHhcCCHhHccccHHHHHHHHHHHHhh
Confidence 0122346788899999999999999 999999999998753
No 59
>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}
Probab=100.00 E-value=4.3e-40 Score=371.32 Aligned_cols=259 Identities=27% Similarity=0.377 Sum_probs=210.3
Q ss_pred cCCCCccceecccCceEEEEEEeC----CCcEEEEEEccccCc-cchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCC
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLP----DGREVAVKKLQREGL-EGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGS 878 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~----~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~ 878 (1088)
.++|++.+.||+|+||.||+|++. .+..||||++..... ...+.+.+|++++++ ++||||+++++++.++.
T Consensus 48 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~----l~h~~iv~~~~~~~~~~ 123 (325)
T 3kul_A 48 ASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQ----FDHPNIIRLEGVVTRGR 123 (325)
T ss_dssp GGGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHHHHHTT----CCCTTBCCEEEEECGGG
T ss_pred hhHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHHh----CCCCCCCcEEEEEEeCC
Confidence 357889999999999999999974 345699999986532 334678999999987 67999999999999999
Q ss_pred eEEEEEEecCCCCHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeeccccee
Q 001384 879 EKILVYEYMEGGSLEDIISDR-TRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARV 957 (1088)
Q Consensus 879 ~~~lv~e~~~~gsL~~~l~~~-~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~ 957 (1088)
..++||||+++|+|.++++.. ..+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++.
T Consensus 124 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~ 200 (325)
T 3kul_A 124 LAMIVTEYMENGSLDTFLRTHDGQFTIMQLVGMLRGVGAGMRYLSDL---GYVHRDLAARNVLVDSNLVCKVSDFGLSRV 200 (325)
T ss_dssp CCEEEEECCTTCBHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCSSCEE
T ss_pred ccEEEeeCCCCCcHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCcceEEECCCCCEEECCCCcccc
Confidence 999999999999999999754 5799999999999999999999999 999999999999999999999999999987
Q ss_pred ecCCCCc--ccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHh-CCcCCCCCchhHHHHHHhhhccCCCCCCcc
Q 001384 958 VSAGDSH--VSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELAT-GRRALEGGEECLVEWGRRVMGYGRHGPGRA 1034 (1088)
Q Consensus 958 ~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 1034 (1088)
....... ......+|+.|+|||++.+..++.++||||||+++|||++ |+.||.+...... .......
T Consensus 201 ~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~--~~~~~~~-------- 270 (325)
T 3kul_A 201 LEDDPDAAYTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERPYWNMTNRDV--ISSVEEG-------- 270 (325)
T ss_dssp CC----CCEECC---CCGGGSCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTSCHHHH--HHHHHTT--------
T ss_pred cccCccceeeccCCCCcccccCHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCcccCCHHHH--HHHHHcC--------
Confidence 6543222 1223456778999999988899999999999999999999 9999987544211 1111100
Q ss_pred ccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhhCCCC
Q 001384 1035 VIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKILPHC 1087 (1088)
Q Consensus 1035 ~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i~~~~ 1087 (1088)
...+.+...+..+.+++.+|++.||++||+++||++.|+++++..
T Consensus 271 --------~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~eil~~L~~l~~~~ 315 (325)
T 3kul_A 271 --------YRLPAPMGCPHALHQLMLDCWHKDRAQRPRFSQIVSVLDALIRSP 315 (325)
T ss_dssp --------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSC
T ss_pred --------CCCCCCCCcCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhCc
Confidence 011112234467889999999999999999999999999987653
No 60
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=4.7e-39 Score=381.55 Aligned_cols=362 Identities=22% Similarity=0.217 Sum_probs=293.3
Q ss_pred CccCEEEcCCCcccccCcccccCCCCCcEEEccCccccCCC-ccccCCCCCCCEEeCCCCcCCccCcccccCCCCCcEEE
Q 001384 244 CSLEIFDLSENEFIGDFPGEVSNCRNLVVLNLFGNNFSGPI-PAEIGSISGLEALFLGKNNFLSVIPESLLNLSKLEVLD 322 (1088)
Q Consensus 244 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 322 (1088)
++|++|+|++|++++..|..|.++++|++|+|++|.+.+.+ +..|..+++|++|+|++|.+++..|..|+++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 57888888888888888888888888999999888887555 55688888899999998888888888888888899999
Q ss_pred cCCCcCCCchhHh--hhcccccceeecCcCcccCCCCCccccCCCCcCEEEccCCccCCCCCccccCC--cCcceeeccc
Q 001384 323 LSSNNFGGEVQKI--FGRFTQVKILALHSNSYIDGMNSSGILKLPNISRLDLSHNNFTGPLPVEISQM--RSLKFLILAH 398 (1088)
Q Consensus 323 L~~N~l~~~~~~~--~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l--~~L~~L~L~~ 398 (1088)
|++|.+++..+.. |+.+++|+.|++++|.+........+.++++|++|+|++|++++..|..+..+ .+|+.|++++
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 9999888766554 88888888888888886554444447788889999999999988888888776 6888899999
Q ss_pred cccCCcCCcc--------cCCCCCCcEEEccCCcCCCCCCccccCC---CCCcEEEccccccccCC----------Cccc
Q 001384 399 NRFNGSIPAV--------YGNMPNLQTLDLSFNELTGPIPPSIGNL---TSLLWLMLANNSLSGEI----------PGEI 457 (1088)
Q Consensus 399 N~l~~~~p~~--------~~~l~~L~~L~L~~N~l~~~~p~~~~~l---~~L~~L~L~~N~l~~~~----------p~~l 457 (1088)
|.+.+..+.. +..+++|++|++++|++++.+|..+..+ ++|+.|++++|.+.+.. +..+
T Consensus 190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 269 (455)
T 3v47_A 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269 (455)
T ss_dssp CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTT
T ss_pred CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccc
Confidence 9888654443 3356789999999999888777777654 78889999888665421 1222
Q ss_pred cC--CCCCCeEEccCCcCccCCCchhhccCCCCCccccccccCCcccccCCccccccccccCCCCCCCcceeeehhcccc
Q 001384 458 GN--CTSLLWLNLSNNKLSGNIPPEVMTIGRNARPTFEANQRNGERTIAGSSECLSMKRWIPADYPPFSFVYTILTRKSC 535 (1088)
Q Consensus 458 ~~--l~~L~~L~L~~N~l~g~ip~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (1088)
.. .++|++|++++|++++.+|..+..+
T Consensus 270 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l--------------------------------------------------- 298 (455)
T 3v47_A 270 KGLEASGVKTCDLSKSKIFALLKSVFSHF--------------------------------------------------- 298 (455)
T ss_dssp GGGTTSCCCEEECCSSCCCEECTTTTTTC---------------------------------------------------
T ss_pred ccccccCceEEEecCccccccchhhcccC---------------------------------------------------
Confidence 22 3688999999999887666544222
Q ss_pred chhhhhcccCCcccccccCCCcccceeeeceEEccCCccccccCcccccCCCccEEeccccccccCCCCcccCc-cceEE
Q 001384 536 RSLWDRLLKGTGIFPVCLPGLASRTFQITGYLQLSGNQLSGELSPDIGKLQNFSMVHLGFNQFDGKLPSQFDQL-PLIVL 614 (1088)
Q Consensus 536 ~~l~~~~~~~~~~~~~~l~~~~~~~~~~l~~L~l~~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~l-~l~~l 614 (1088)
..+++|+|++|++++..|..++.+++|+.|+|++|++++..|..++.+ .|++|
T Consensus 299 --------------------------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 352 (455)
T 3v47_A 299 --------------------------TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVL 352 (455)
T ss_dssp --------------------------TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEE
T ss_pred --------------------------CCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEE
Confidence 124679999999998889999999999999999999998888888888 79999
Q ss_pred EccCCcccccCCccccCCccCcEEEccccccCCcCCcccccccccceeeccCCCCccccCCCCCccccc
Q 001384 615 NLTRNNFSGEIPSEFGNIKCLQNLDLSYNNFSGPFPASFNNLTELSKLNISYNPLVSGTIPSTGQLATF 683 (1088)
Q Consensus 615 ~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~l~~L~~l~l~~N~l~~g~ip~~~~~~~~ 683 (1088)
+|++|++++..|..|+++++|+.|+|++|+|++..|..+..+++|+.|++++|++ .+.+|....+..+
T Consensus 353 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~l~~~ 420 (455)
T 3v47_A 353 DLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW-DCSCPRIDYLSRW 420 (455)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB-CCCTTTTHHHHHH
T ss_pred ECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCc-ccCCCcchHHHHH
Confidence 9999999988899999999999999999999976666789999999999999999 7888876555443
No 61
>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*
Probab=100.00 E-value=4.3e-39 Score=367.06 Aligned_cols=251 Identities=22% Similarity=0.303 Sum_probs=208.6
Q ss_pred cCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCcc------chHHHHHHHHHHhCCCCCCCCCceeEEeeEEec
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGLE------GEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLD 876 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~------~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~ 876 (1088)
.++|++.+.||+|+||+||+|+.+ +|+.||+|++.+.... ..+.+.+|+.++.. ++||||+++++++.+
T Consensus 11 ~~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~----l~hpnIv~l~~~~~~ 86 (361)
T 2yab_A 11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQ----VLHPNIITLHDVYEN 86 (361)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTT----CCCTTBCCEEEEEEC
T ss_pred hhceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHh----CCCcCCCcEEEEEEe
Confidence 467999999999999999999976 6899999999865432 24678999999987 679999999999999
Q ss_pred CCeEEEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCC----CEEEeec
Q 001384 877 GSEKILVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEG----KALVTDF 952 (1088)
Q Consensus 877 ~~~~~lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~----~~kl~Df 952 (1088)
+...++||||+++|+|.+++.....+++.+++.++.||+.||+|||++ +|+||||||+||+++.++ .+||+||
T Consensus 87 ~~~~~lv~e~~~gg~L~~~l~~~~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDlkp~NIll~~~~~~~~~vkl~DF 163 (361)
T 2yab_A 87 RTDVVLILELVSGGELFDFLAQKESLSEEEATSFIKQILDGVNYLHTK---KIAHFDLKPENIMLLDKNIPIPHIKLIDF 163 (361)
T ss_dssp SSEEEEEEECCCSCBHHHHHTTCSCCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESCTTSSSCCEEECCC
T ss_pred CCEEEEEEEcCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEeCCCCCccCEEEEec
Confidence 999999999999999999999888899999999999999999999999 999999999999998877 7999999
Q ss_pred ccceeecCCCCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCCCCC
Q 001384 953 GLARVVSAGDSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRHGPG 1032 (1088)
Q Consensus 953 g~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~ 1032 (1088)
|+++...... ......||+.|+|||++.+..++.++||||+||++|+|++|..||.+.... +....+.....
T Consensus 164 G~a~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~~ll~g~~Pf~~~~~~--~~~~~i~~~~~---- 235 (361)
T 2yab_A 164 GLAHEIEDGV--EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQ--ETLANITAVSY---- 235 (361)
T ss_dssp SSCEECCTTC--CCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHH--HHHHHHHTTCC----
T ss_pred CCceEcCCCC--ccccCCCCccEECchHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCHH--HHHHHHHhcCC----
Confidence 9998765432 234567999999999999989999999999999999999999999875442 11122211100
Q ss_pred ccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1033 RAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1033 ~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
..+... .......+.+++.+|++.||++||++.|+++
T Consensus 236 --~~~~~~-------~~~~s~~~~~li~~~L~~dP~~R~t~~e~l~ 272 (361)
T 2yab_A 236 --DFDEEF-------FSQTSELAKDFIRKLLVKETRKRLTIQEALR 272 (361)
T ss_dssp --CCCHHH-------HTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred --CCCchh-------ccCCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 001000 1122356788999999999999999999874
No 62
>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...
Probab=100.00 E-value=3.5e-39 Score=364.39 Aligned_cols=247 Identities=27% Similarity=0.304 Sum_probs=207.1
Q ss_pred CCCCccceecccCceEEEEEEeC-CCcEEEEEEccccC---ccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeE
Q 001384 805 GKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREG---LEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEK 880 (1088)
Q Consensus 805 ~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~ 880 (1088)
++|++.+.||+|+||+||+|+.+ +|+.||+|++.+.. ......+.+|++++.. ++||||+++++++.+.+..
T Consensus 5 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~----l~hp~iv~l~~~~~~~~~~ 80 (337)
T 1o6l_A 5 NDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQN----TRHPFLTALKYAFQTHDRL 80 (337)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHS----CCCTTBCCEEEEEECSSEE
T ss_pred HHeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHh----CCCCcCcceEEEEEeCCEE
Confidence 46889999999999999999976 68999999997642 2334578899999986 6799999999999999999
Q ss_pred EEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccceeecC
Q 001384 881 ILVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARVVSA 960 (1088)
Q Consensus 881 ~lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~~~ 960 (1088)
|+||||+++|+|.+++.....+++.+++.++.||+.||+|||++ +|+||||||+||+++.++.+||+|||+++....
T Consensus 81 ~lv~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~ 157 (337)
T 1o6l_A 81 CFVMEYANGGELFFHLSRERVFTEERARFYGAEIVSALEYLHSR---DVVYRDIKLENLMLDKDGHIKITDFGLCKEGIS 157 (337)
T ss_dssp EEEEECCTTCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCSCC
T ss_pred EEEEeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCcCCHHHEEECCCCCEEEeeccchhhccc
Confidence 99999999999999999888899999999999999999999999 999999999999999999999999999986432
Q ss_pred CCCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCCCCCccccchhh
Q 001384 961 GDSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRHGPGRAVIPVVL 1040 (1088)
Q Consensus 961 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1040 (1088)
. ........||+.|+|||++.+..++.++||||+||++|||++|+.||.+..... ....+.....
T Consensus 158 ~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~--~~~~i~~~~~------------ 222 (337)
T 1o6l_A 158 D-GATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHER--LFELILMEEI------------ 222 (337)
T ss_dssp T-TCCBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHH--HHHHHHHCCC------------
T ss_pred C-CCcccccccChhhCChhhhcCCCCCchhhcccchhHHHHHhcCCCCCCCCCHHH--HHHHHHcCCC------------
Confidence 2 223445689999999999999999999999999999999999999998754321 1112211000
Q ss_pred cCCCccccHHHHHHHHHHHhhhcccCCCCCC-----CHHHHHH
Q 001384 1041 LGSGLAEGAEEMSELLRIGVRCTAEAPNARP-----NVKEVLA 1078 (1088)
Q Consensus 1041 ~~~~~~~~~~~~~~l~~li~~cl~~dP~~RP-----s~~eil~ 1078 (1088)
..+.....++.+++.+|++.||++|| +++||++
T Consensus 223 -----~~p~~~s~~~~~li~~lL~~dP~~R~g~~~~~~~ei~~ 260 (337)
T 1o6l_A 223 -----RFPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVME 260 (337)
T ss_dssp -----CCCTTSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHT
T ss_pred -----CCCCCCCHHHHHHHHHHhhcCHHHhcCCCCCCHHHHHc
Confidence 01122345788899999999999999 8888865
No 63
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=9.2e-39 Score=379.08 Aligned_cols=354 Identities=22% Similarity=0.242 Sum_probs=262.6
Q ss_pred ccCCeeeCCCCCCCCCcCccCCCCCCCcEEECccccccCc---ccCCCCCCCceeecccccccccccCchhhhcccceEE
Q 001384 103 TQLSYLDLSRNTFSGSIPDDLSSCRSLKYLNLSHNILSGD---LNLSGLRSLEILDLSVNRIHGEISFSFPAICEKLVVA 179 (1088)
Q Consensus 103 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~---~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L 179 (1088)
++|++|||++|.|++..|..|+++++|++|+|++|.+.+. ..+.++++|++|+|++|++++..|..+.. +++|++|
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L 108 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNG-LANLEVL 108 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTT-CTTCCEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccC-cccCCEE
Confidence 7899999999999988899999999999999999988753 34788888888888888887655554432 3556666
Q ss_pred eccCccCCCCCCc--cccCCCCCcEEEccCccccccccccCcccceecccCcccccccccccccCCCccCEEEcCCCccc
Q 001384 180 NLSLNNLTGRIDT--CFDGCLNLRYLDLSSNNFRGNIWNGLAQLVEFSVSENVLSGVVSSSVFKENCSLEIFDLSENEFI 257 (1088)
Q Consensus 180 ~L~~n~l~~~~~~--~l~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~ 257 (1088)
+|++|++++..+. .|..+++|++|+|++|+++ +..+...|..+++|++|++++|+++
T Consensus 109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~---------------------~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK---------------------KIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCC---------------------SCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred eCCCCCCCccccCcccccCcccCCEEECCCCccC---------------------ccCcccccCCCCcccEEeCCCCccc
Confidence 6666655553332 2555555555555555554 3334444666667777777777777
Q ss_pred ccCcccccCC--CCCcEEEccCccccCCCccc--------cCCCCCCCEEeCCCCcCCccCcccccCC---CCCcEEEcC
Q 001384 258 GDFPGEVSNC--RNLVVLNLFGNNFSGPIPAE--------IGSISGLEALFLGKNNFLSVIPESLLNL---SKLEVLDLS 324 (1088)
Q Consensus 258 ~~~p~~l~~l--~~L~~L~L~~N~l~~~~p~~--------~~~l~~L~~L~L~~N~l~~~~p~~l~~l---~~L~~L~L~ 324 (1088)
+..|..+..+ .+|+.|++++|.+.+..+.. +..+++|++|+|++|++++.+|..+... ++|+.|+++
T Consensus 168 ~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~ 247 (455)
T 3v47_A 168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS 247 (455)
T ss_dssp CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECT
T ss_pred ccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeec
Confidence 6666666655 56777777777776544333 2355677777777777777666665443 677777777
Q ss_pred CCcCCCc----------hhHhhhc--ccccceeecCcCcccCCCCCccccCCCCcCEEEccCCccCCCCCccccCCcCcc
Q 001384 325 SNNFGGE----------VQKIFGR--FTQVKILALHSNSYIDGMNSSGILKLPNISRLDLSHNNFTGPLPVEISQMRSLK 392 (1088)
Q Consensus 325 ~N~l~~~----------~~~~~~~--l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 392 (1088)
+|.+.+. .+..+.. .++|+.|++++|.+. ...+..+..+++|++|+|++|++++..|..|..+++|+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 326 (455)
T 3v47_A 248 NSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLL 326 (455)
T ss_dssp TCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred cccccccccchhhhccCcccccccccccCceEEEecCcccc-ccchhhcccCCCCCEEECCCCcccccChhHhcCcccCC
Confidence 7654432 2222332 257888888887754 34456677888999999999999988888899999999
Q ss_pred eeeccccccCCcCCcccCCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEccccccccCCCccccCCCCCCeEEccCCc
Q 001384 393 FLILAHNRFNGSIPAVYGNMPNLQTLDLSFNELTGPIPPSIGNLTSLLWLMLANNSLSGEIPGEIGNCTSLLWLNLSNNK 472 (1088)
Q Consensus 393 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~ 472 (1088)
+|+|++|++++..|..++.+++|++|+|++|++++..|..++++++|++|+|++|++++..+..+..+++|++|+|++|+
T Consensus 327 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 327 KLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp EEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCC
Confidence 99999999987778889999999999999999998888899999999999999999997666677899999999999999
Q ss_pred CccCCCc
Q 001384 473 LSGNIPP 479 (1088)
Q Consensus 473 l~g~ip~ 479 (1088)
+++.+|.
T Consensus 407 l~~~~~~ 413 (455)
T 3v47_A 407 WDCSCPR 413 (455)
T ss_dssp BCCCTTT
T ss_pred cccCCCc
Confidence 9988873
No 64
>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*
Probab=100.00 E-value=2.5e-38 Score=354.54 Aligned_cols=280 Identities=34% Similarity=0.558 Sum_probs=227.4
Q ss_pred cCCccCHHHHHHHcCCCCcc------ceecccCceEEEEEEeCCCcEEEEEEccccC----ccchHHHHHHHHHHhCCCC
Q 001384 791 DKTAFTYSDILKATGKFSED------RIIGKGGFGTVYRGVLPDGREVAVKKLQREG----LEGEREFRAEMEVLSGNGF 860 (1088)
Q Consensus 791 ~~~~~~~~~~~~~~~~~~~~------~~LG~G~~g~Vy~~~~~~~~~vavK~~~~~~----~~~~~~~~~E~~~l~~~~~ 860 (1088)
+...|++.++..++++|... +.||+|+||.||+|.. +++.||||++.... ....+.+.+|++++++
T Consensus 11 ~~~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~--- 86 (307)
T 2nru_A 11 RFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAK--- 86 (307)
T ss_dssp CCEECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEES-SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHH---
T ss_pred CCCcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEE-CCceEEEEEEecccCcchHHHHHHHHHHHHHHHh---
Confidence 34568999999999998877 8999999999999997 58899999987532 2234678899999987
Q ss_pred CCCCCceeEEeeEEecCCeEEEEEEecCCCCHHHHHhh---cCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCC
Q 001384 861 GWPHPNLVTLYGWCLDGSEKILVYEYMEGGSLEDIISD---RTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKAS 937 (1088)
Q Consensus 861 ~l~h~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~---~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~ 937 (1088)
++||||+++++++.+.+..++||||+++|+|.+++.. ..++++..++.++.|++.||+|||++ +|+||||||+
T Consensus 87 -l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dlkp~ 162 (307)
T 2nru_A 87 -CQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHEN---HHIHRDIKSA 162 (307)
T ss_dssp -CCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHTGGGCCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGG
T ss_pred -cCCCCeEEEEEEEecCCceEEEEEecCCCcHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhcC---CeecCCCCHH
Confidence 6799999999999999999999999999999999974 34599999999999999999999999 9999999999
Q ss_pred CEEEcCCCCEEEeecccceeecCCCCc-ccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCch--
Q 001384 938 NVLLDKEGKALVTDFGLARVVSAGDSH-VSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEE-- 1014 (1088)
Q Consensus 938 NIll~~~~~~kl~Dfg~a~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~-- 1014 (1088)
||+++.++.+||+|||+++........ ......||+.|+|||.+.+ .++.++||||||+++|+|++|+.||.....
T Consensus 163 Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~-~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~ 241 (307)
T 2nru_A 163 NILLDEAFTAKISDFGLARASEKFAQTVMTSRIVGTTAYMAPEALRG-EITPKSDIYSFGVVLLEIITGLPAVDEHREPQ 241 (307)
T ss_dssp GEEECTTCCEEECCCTTCEECCSCSSCEECSSCCSCGGGCCHHHHTT-EECTHHHHHHHHHHHHHHHHCCCSBCTTBSSS
T ss_pred HEEEcCCCcEEEeecccccccccccccccccccCCCcCcCChHHhcC-CCCccchhHHHHHHHHHHHHCCCCcccCcchH
Confidence 999999999999999999876543222 2334578999999998875 589999999999999999999999987543
Q ss_pred hHHHHHHhhhccCCCCCCccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhhCC
Q 001384 1015 CLVEWGRRVMGYGRHGPGRAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKILP 1085 (1088)
Q Consensus 1015 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i~~ 1085 (1088)
....+...... . ...++..+.......+......+.+++.+|++.||.+||+++||++.|+++..
T Consensus 242 ~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~l~~~L~~l~~ 306 (307)
T 2nru_A 242 LLLDIKEEIED--E----EKTIEDYIDKKMNDADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQEMTA 306 (307)
T ss_dssp BTTHHHHHHHT--T----SCCHHHHSCSSCSCCCHHHHHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHC-
T ss_pred HHHHHHHHhhh--h----hhhhhhhccccccccchHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHhc
Confidence 12222222210 0 11111222222233456778889999999999999999999999999999863
No 65
>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*
Probab=100.00 E-value=2.7e-39 Score=364.54 Aligned_cols=264 Identities=28% Similarity=0.380 Sum_probs=205.8
Q ss_pred CCCCccceecccCceEEEEEEeCCCcEEEEEEccccCccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCC----eE
Q 001384 805 GKFSEDRIIGKGGFGTVYRGVLPDGREVAVKKLQREGLEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGS----EK 880 (1088)
Q Consensus 805 ~~~~~~~~LG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~----~~ 880 (1088)
++|++.+.||+|+||+||+|++. ++.||||++.... ........|+.++.+ ++||||+++++++.... ..
T Consensus 24 ~~y~~~~~lg~G~~g~Vy~~~~~-~~~vavK~~~~~~-~~~~~~~~E~~~l~~----l~hpniv~~~~~~~~~~~~~~~~ 97 (322)
T 3soc_A 24 MPLQLLEVKARGRFGCVWKAQLL-NEYVAVKIFPIQD-KQSWQNEYEVYSLPG----MKHENILQFIGAEKRGTSVDVDL 97 (322)
T ss_dssp EEEEEEEEEECSTTCEEEEEEET-TEEEEEEEECGGG-HHHHHHHHHHHTSTT----CCCTTBCCEEEEEEEECSSSEEE
T ss_pred hhchhhheecccCceEEEEEEEC-CCEEEEEEeecCc-hHHHHHHHHHHHHhc----CCCCCchhhcceeccCCCCCceE
Confidence 57899999999999999999985 7899999997642 223345567777765 68999999999998744 46
Q ss_pred EEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcC-------CCCeEecCCCCCCEEEcCCCCEEEeecc
Q 001384 881 ILVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHEC-------YPPIVHRDVKASNVLLDKEGKALVTDFG 953 (1088)
Q Consensus 881 ~lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~-------~~~ivH~DLkp~NIll~~~~~~kl~Dfg 953 (1088)
++||||+++|+|.++++.. .+++.+++.++.|++.||+|||+.+ .++|+||||||+||+++.++.+||+|||
T Consensus 98 ~lv~e~~~~g~L~~~l~~~-~~~~~~~~~i~~qi~~al~~LH~~~~~l~~~~~~~ivH~Dlkp~Nill~~~~~~kL~DFg 176 (322)
T 3soc_A 98 WLITAFHEKGSLSDFLKAN-VVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFG 176 (322)
T ss_dssp EEEEECCTTCBHHHHHHHC-CBCHHHHHHHHHHHHHHHHHHTCCEEEETTEEECEEECSCCSGGGEEECTTCCEEECCCT
T ss_pred EEEEecCCCCCHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHhhccccccccCCCEEeCCCChHhEEECCCCeEEEccCC
Confidence 9999999999999999764 5999999999999999999999861 2389999999999999999999999999
Q ss_pred cceeecCCCCc-ccccccccccccCccccCC-----CCCCcchhHHHHHHHHHHHHhCCcCCCCCch-------------
Q 001384 954 LARVVSAGDSH-VSTTIAGTVGYVAPEYGQT-----WQATTKGDVYSFGVLAMELATGRRALEGGEE------------- 1014 (1088)
Q Consensus 954 ~a~~~~~~~~~-~~~~~~gt~~y~aPE~~~~-----~~~~~~~DvwslG~~l~elltg~~p~~~~~~------------- 1014 (1088)
+++........ ......||+.|+|||++.+ ..++.++|||||||++|||++|+.||.+..+
T Consensus 177 ~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~ 256 (322)
T 3soc_A 177 LALKFEAGKSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVDEYMLPFEEEIGQH 256 (322)
T ss_dssp TCEEECTTSCCCCCTTCCCCGGGCCHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTTBTTSSSCCCCCCCTTHHHHCSS
T ss_pred cccccccccCccccccCccCccccCHhhcccccccCcCCCccchhHHHHHHHHHHHhCCCCCCCCcchhccchhhhhccC
Confidence 99887643322 2334678999999998876 3556788999999999999999999976432
Q ss_pred -hHHHHHHhhhccCCCCCCccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhhCC
Q 001384 1015 -CLVEWGRRVMGYGRHGPGRAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKILP 1085 (1088)
Q Consensus 1015 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i~~ 1085 (1088)
...++......... ....+. .........++.+++.+||+.||++||+++||++.|+++.+
T Consensus 257 ~~~~~~~~~~~~~~~----~~~~~~------~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~l~~ 318 (322)
T 3soc_A 257 PSLEDMQEVVVHKKK----RPVLRD------YWQKHAGMAMLCETIEECWDHDAEARLSAGCVGERITQMQR 318 (322)
T ss_dssp CCHHHHHHHHTTSCC----CCCCCG------GGGSSHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred CchhhhhhhhhcccC----CCCccc------cccccchHHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHH
Confidence 11111111110000 000000 00123456779999999999999999999999999998854
No 66
>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A
Probab=100.00 E-value=8.8e-40 Score=361.70 Aligned_cols=256 Identities=27% Similarity=0.428 Sum_probs=210.3
Q ss_pred cCCCCccceecccCceEEEEEEeCCCcEEEEEEccccCccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeEEEE
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLPDGREVAVKKLQREGLEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEKILV 883 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~~lv 883 (1088)
.++|++.+.||+|+||+||+|.+++++.||||++.... ...+++.+|++++.+ ++||||+++++++.++...++|
T Consensus 23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~----l~h~~i~~~~~~~~~~~~~~lv 97 (283)
T 3gen_A 23 PKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGS-MSEDEFIEEAKVMMN----LSHEKLVQLYGVCTKQRPIFII 97 (283)
T ss_dssp GGGEEEEEECC---CEEEEEEEETTTEEEEEEEECTTS-BCHHHHHHHHHHHHT----CCCTTBCCEEEEECSSSSEEEE
T ss_pred HHHHHhHhhcCCCCCceEEEEEEcCCCeEEEEEecCCC-CCHHHHHHHHHHHhc----CCCCCEeeEEEEEecCCCeEEE
Confidence 35788899999999999999999888899999998653 345678999999997 6799999999999999999999
Q ss_pred EEecCCCCHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccceeecCCC
Q 001384 884 YEYMEGGSLEDIISD-RTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARVVSAGD 962 (1088)
Q Consensus 884 ~e~~~~gsL~~~l~~-~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~~~~~ 962 (1088)
|||+++|+|.+++.. ..++++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||.++......
T Consensus 98 ~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~ 174 (283)
T 3gen_A 98 TEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESK---QFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDE 174 (283)
T ss_dssp ECCCTTCBHHHHHHCGGGCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCSGGGEEECTTSCEEECSTTGGGGBCCHH
T ss_pred EeccCCCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCccceEEEcCCCCEEEccccccccccccc
Confidence 999999999999976 55799999999999999999999999 99999999999999999999999999998664332
Q ss_pred CcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHh-CCcCCCCCchhHHHHHHhhhccCCCCCCccccchhhc
Q 001384 963 SHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELAT-GRRALEGGEECLVEWGRRVMGYGRHGPGRAVIPVVLL 1041 (1088)
Q Consensus 963 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1041 (1088)
........+|+.|+|||.+.+..++.++||||+|+++|||++ |+.||........ .........
T Consensus 175 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~t~g~~p~~~~~~~~~--~~~~~~~~~------------- 239 (283)
T 3gen_A 175 YTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSET--AEHIAQGLR------------- 239 (283)
T ss_dssp HHSTTSTTSCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHH--HHHHHTTCC-------------
T ss_pred cccccCCccCcccCCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCccccChhHH--HHHHhcccC-------------
Confidence 222334456788999999988899999999999999999998 9999987654211 111110000
Q ss_pred CCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhhCC
Q 001384 1042 GSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKILP 1085 (1088)
Q Consensus 1042 ~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i~~ 1085 (1088)
...+......+.+++.+|++.||++||+++|+++.|+++++
T Consensus 240 ---~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~~~~ 280 (283)
T 3gen_A 240 ---LYRPHLASEKVYTIMYSCWHEKADERPTFKILLSNILDVMD 280 (283)
T ss_dssp ---CCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred ---CCCCCcCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHHhh
Confidence 00112223578889999999999999999999999999864
No 67
>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*
Probab=100.00 E-value=1.3e-38 Score=358.50 Aligned_cols=262 Identities=25% Similarity=0.371 Sum_probs=214.7
Q ss_pred CCccCHHHHHHHcCC----------CCccceecccCceEEEEEEeC-CCcEEEEEEccccCccchHHHHHHHHHHhCCCC
Q 001384 792 KTAFTYSDILKATGK----------FSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGLEGEREFRAEMEVLSGNGF 860 (1088)
Q Consensus 792 ~~~~~~~~~~~~~~~----------~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~ 860 (1088)
...++++++..+++. |+..+.||+|+||.||+|+++ +|+.||||++........+.+.+|+.++++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~--- 98 (321)
T 2c30_A 22 SGVVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRD--- 98 (321)
T ss_dssp ---CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCSHHHHHHHHHHHTT---
T ss_pred CCcCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccchhHHHHHHHHHHHHHh---
Confidence 345778887777653 667789999999999999986 799999999987665666788999999986
Q ss_pred CCCCCceeEEeeEEecCCeEEEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEE
Q 001384 861 GWPHPNLVTLYGWCLDGSEKILVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVL 940 (1088)
Q Consensus 861 ~l~h~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIl 940 (1088)
++||||+++++++...+..++||||+++|+|.++++. .++++.+++.++.|++.||+|||+. +|+||||||+||+
T Consensus 99 -l~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~-~~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIl 173 (321)
T 2c30_A 99 -YQHFNVVEMYKSYLVGEELWVLMEFLQGGALTDIVSQ-VRLNEEQIATVCEAVLQALAYLHAQ---GVIHRDIKSDSIL 173 (321)
T ss_dssp -CCCTTBCCEEEEEEETTEEEEEECCCCSCBHHHHHTT-CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEE
T ss_pred -CCCCCcceEEEEEEECCEEEEEEecCCCCCHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEE
Confidence 6799999999999999999999999999999999865 4699999999999999999999999 9999999999999
Q ss_pred EcCCCCEEEeecccceeecCCCCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHH
Q 001384 941 LDKEGKALVTDFGLARVVSAGDSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWG 1020 (1088)
Q Consensus 941 l~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~ 1020 (1088)
++.++.+||+|||++....... .......||+.|+|||++.+..++.++||||+|+++|||++|+.||....... ..
T Consensus 174 l~~~~~~kl~Dfg~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~pf~~~~~~~--~~ 250 (321)
T 2c30_A 174 LTLDGRVKLSDFGFCAQISKDV-PKRKSLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEPPYFSDSPVQ--AM 250 (321)
T ss_dssp ECTTCCEEECCCTTCEECCSSS-CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHH--HH
T ss_pred ECCCCcEEEeeeeeeeecccCc-cccccccCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH--HH
Confidence 9999999999999998765432 22345679999999999999899999999999999999999999998754421 11
Q ss_pred HhhhccCCCCCCccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1021 RRVMGYGRHGPGRAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1021 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
........ .. ..........+.+++.+|++.||++||+++|+++
T Consensus 251 ~~~~~~~~-~~-------------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~ 294 (321)
T 2c30_A 251 KRLRDSPP-PK-------------LKNSHKVSPVLRDFLERMLVRDPQERATAQELLD 294 (321)
T ss_dssp HHHHHSSC-CC-------------CTTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred HHHhcCCC-CC-------------cCccccCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 11110000 00 0011223356888999999999999999999986
No 68
>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...
Probab=100.00 E-value=3.9e-40 Score=366.91 Aligned_cols=272 Identities=25% Similarity=0.362 Sum_probs=210.0
Q ss_pred CCCCccceecccCceEEEEEEe-----CCCcEEEEEEccccCccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecC--
Q 001384 805 GKFSEDRIIGKGGFGTVYRGVL-----PDGREVAVKKLQREGLEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDG-- 877 (1088)
Q Consensus 805 ~~~~~~~~LG~G~~g~Vy~~~~-----~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~-- 877 (1088)
++|++.+.||+|+||+||+|++ .+++.||||++........+.+.+|++++.+ ++||||+++++++...
T Consensus 10 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~----l~h~~iv~~~~~~~~~~~ 85 (295)
T 3ugc_A 10 RHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKS----LQHDNIVKYKGVCYSAGR 85 (295)
T ss_dssp GGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCCHHHHHHHHHHHHHHHT----CCCTTBCCEEEEECHHHH
T ss_pred HHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCCHHHHHHHHHHHHHHHh----CCCCCEeeEEEEEecCCC
Confidence 5789999999999999999983 2688999999987655555788999999997 6799999999998653
Q ss_pred CeEEEEEEecCCCCHHHHHhhcC-CCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccce
Q 001384 878 SEKILVYEYMEGGSLEDIISDRT-RLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLAR 956 (1088)
Q Consensus 878 ~~~~lv~e~~~~gsL~~~l~~~~-~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~ 956 (1088)
...++||||+++|+|.+++.... ++++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++
T Consensus 86 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dikp~Nil~~~~~~~kl~Dfg~~~ 162 (295)
T 3ugc_A 86 RNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVENENRVKIGDFGLTK 162 (295)
T ss_dssp TSCEEEEECCTTCBHHHHHHHCGGGCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCCCSCC
T ss_pred CceEEEEEeCCCCCHHHHHHhcccccCHHHHHHHHHHHHHHHHHHhcC---CcccCCCCHhhEEEcCCCeEEEccCcccc
Confidence 56899999999999999997754 599999999999999999999999 99999999999999999999999999998
Q ss_pred eecCCCCc--ccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCCC-CCc
Q 001384 957 VVSAGDSH--VSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRHG-PGR 1033 (1088)
Q Consensus 957 ~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~-~~~ 1033 (1088)
........ ......++..|+|||.+.+..++.++||||+|+++|||++|..|+.......... ........ ...
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~ 239 (295)
T 3ugc_A 163 VLPQDKEFFKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRM---IGNDKQGQMIVF 239 (295)
T ss_dssp -------------CTTCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTTCTTCSHHHHHHHH---HCTTCCTHHHHH
T ss_pred cccCCcceeeeccCCCCccceeCcHHhcCCCCChHHHHHHHHHHHHHHHhcccccCCChHHHHhh---hcCccccchhHH
Confidence 76543221 2233457788999999988899999999999999999999999987542211111 10000000 000
Q ss_pred cccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhhCCC
Q 001384 1034 AVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKILPH 1086 (1088)
Q Consensus 1034 ~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i~~~ 1086 (1088)
............+.+...+.++.+++.+|++.||++||+++|+++.|+++.+.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~el~~~L~~l~~~ 292 (295)
T 3ugc_A 240 HLIELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRDN 292 (295)
T ss_dssp HHHHHHHTTCCCCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred HHHHHHhccCcCCCCcCcCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHHh
Confidence 01111111222223444557889999999999999999999999999998754
No 69
>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*
Probab=100.00 E-value=4.7e-39 Score=359.26 Aligned_cols=260 Identities=27% Similarity=0.390 Sum_probs=204.1
Q ss_pred cCCCCccceecccCceEEEEEEeCCCcEEEEEEccccCccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEec----CCe
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLPDGREVAVKKLQREGLEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLD----GSE 879 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~----~~~ 879 (1088)
.++|++.+.||+|+||+||+|++ +++.||||++... ....+..|.+++.... ++||||+++++++.. ...
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~---~~~~~~~e~~~~~~~~--l~h~niv~~~~~~~~~~~~~~~ 80 (301)
T 3q4u_A 7 ARDITLLECVGKGRYGEVWRGSW-QGENVAVKIFSSR---DEKSWFRETELYNTVM--LRHENILGFIASDMTSRHSSTQ 80 (301)
T ss_dssp GGGCEEEEEEEECSSEEEEEEEE-TTEEEEEEEECGG---GHHHHHHHHHHHHHTC--CCCTTBCCEEEEEEEEETTEEE
T ss_pred cCcEEEEEeeccCCCcEEEEEEE-CCEEEEEEEeccc---cchhhHHHHHHHHHhh--ccCcCeeeEEEeeccccCCCce
Confidence 45799999999999999999998 6899999998754 3455666777666543 689999999998654 346
Q ss_pred EEEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHH--------hcCCCCeEecCCCCCCEEEcCCCCEEEee
Q 001384 880 KILVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLH--------HECYPPIVHRDVKASNVLLDKEGKALVTD 951 (1088)
Q Consensus 880 ~~lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH--------~~~~~~ivH~DLkp~NIll~~~~~~kl~D 951 (1088)
.++||||+++|+|.++++. ..+++..++.++.|++.||+||| +. +|+||||||+||+++.++.+||+|
T Consensus 81 ~~lv~e~~~~g~L~~~l~~-~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~---~ivH~Dlkp~Nill~~~~~~kl~D 156 (301)
T 3q4u_A 81 LWLITHYHEMGSLYDYLQL-TTLDTVSCLRIVLSIASGLAHLHIEIFGTQGKP---AIAHRDLKSKNILVKKNGQCCIAD 156 (301)
T ss_dssp EEEEECCCTTCBHHHHHTT-CCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBC---EEECSCCCGGGEEECTTSCEEECC
T ss_pred eEEehhhccCCCHHHHHhh-cccCHHHHHHHHHHHHHHHHHHHHhhhhccCCC---CeecCCCChHhEEEcCCCCEEEee
Confidence 8999999999999999965 46999999999999999999999 76 999999999999999999999999
Q ss_pred cccceeecCCCCcc---cccccccccccCccccCCC------CCCcchhHHHHHHHHHHHHhC----------CcCCCCC
Q 001384 952 FGLARVVSAGDSHV---STTIAGTVGYVAPEYGQTW------QATTKGDVYSFGVLAMELATG----------RRALEGG 1012 (1088)
Q Consensus 952 fg~a~~~~~~~~~~---~~~~~gt~~y~aPE~~~~~------~~~~~~DvwslG~~l~elltg----------~~p~~~~ 1012 (1088)
||+++......... .....||+.|+|||++.+. .++.++||||||+++|||++| +.||...
T Consensus 157 fg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DvwslG~il~el~tg~~~~~~~~~~~~pf~~~ 236 (301)
T 3q4u_A 157 LGLAVMHSQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYDV 236 (301)
T ss_dssp CTTCEEEETTTTEEECCCCCCCCCGGGCCHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTT
T ss_pred CCCeeecccccccccccccccccccceeChhhhcCcCCCCcccCCchhhHHHHHHHHHHHHhhhcCcccccccccccccc
Confidence 99998765433222 2334799999999988776 455799999999999999999 8888654
Q ss_pred ch---hHHHHHHhhhccCCCCCCccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhh
Q 001384 1013 EE---CLVEWGRRVMGYGRHGPGRAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKI 1083 (1088)
Q Consensus 1013 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i 1083 (1088)
.. .............. ....+. ..........+.+++.+|++.||++||+++||++.|+++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~----~~~~~~------~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i 300 (301)
T 3q4u_A 237 VPNDPSFEDMRKVVCVDQQ----RPNIPN------RWFSDPTLTSLAKLMKECWYQNPSARLTALRIKKTLTKI 300 (301)
T ss_dssp SCSSCCHHHHHHHHTTSCC----CCCCCG------GGGGSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHH
T ss_pred CCCCcchhhhhHHHhccCC----CCCCCh------hhccCccHHHHHHHHHHHhhcChhhCCCHHHHHHHHhcc
Confidence 22 11122111110000 000000 001345678899999999999999999999999999986
No 70
>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...
Probab=100.00 E-value=1.1e-39 Score=374.69 Aligned_cols=257 Identities=26% Similarity=0.411 Sum_probs=199.7
Q ss_pred CCCCccceecccCceEEEEEEeC----CCcEEEEEEccccCc-cchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCe
Q 001384 805 GKFSEDRIIGKGGFGTVYRGVLP----DGREVAVKKLQREGL-EGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSE 879 (1088)
Q Consensus 805 ~~~~~~~~LG~G~~g~Vy~~~~~----~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~ 879 (1088)
++|++.+.||+|+||.||+|+++ ++..||||+++.... ...+++.+|++++.+ ++||||+++++++.++..
T Consensus 45 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~----l~h~niv~~~~~~~~~~~ 120 (373)
T 2qol_A 45 TNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQ----FDHPNIIRLEGVVTKSKP 120 (373)
T ss_dssp GGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHHHHHTT----CCCTTBCCEEEEECSSSS
T ss_pred hhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHHHHHHh----CCCCCCCeEEEEEeeCCc
Confidence 47999999999999999999965 567899999986532 334578999999987 679999999999999999
Q ss_pred EEEEEEecCCCCHHHHHhhcC-CCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccceee
Q 001384 880 KILVYEYMEGGSLEDIISDRT-RLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARVV 958 (1088)
Q Consensus 880 ~~lv~e~~~~gsL~~~l~~~~-~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~ 958 (1088)
.++||||+++|+|.++++... .+++.+++.++.||+.||+|||++ +|+||||||+||+++.++.+||+|||+++..
T Consensus 121 ~~lv~e~~~~~sL~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~ 197 (373)
T 2qol_A 121 VMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDM---GYVHRDLAARNILINSNLVCKVSDFGLGRVL 197 (373)
T ss_dssp CEEEEECCTTCBHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCC------
T ss_pred eEEEEeCCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCcceEEEcCCCCEEECcCcccccc
Confidence 999999999999999998754 699999999999999999999999 9999999999999999999999999999876
Q ss_pred cCCCCcc--cccccccccccCccccCCCCCCcchhHHHHHHHHHHHHh-CCcCCCCCchhHHHHHHhhhccCCCCCCccc
Q 001384 959 SAGDSHV--STTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELAT-GRRALEGGEECLVEWGRRVMGYGRHGPGRAV 1035 (1088)
Q Consensus 959 ~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1035 (1088)
....... .....++..|+|||++.+..++.++||||||+++|||++ |+.||........ .......
T Consensus 198 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt~g~~P~~~~~~~~~--~~~i~~~--------- 266 (373)
T 2qol_A 198 EDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEMSNQDV--IKAVDEG--------- 266 (373)
T ss_dssp ----------------CTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTC-CTTTTCCHHHH--HHHHHTT---------
T ss_pred ccCCccceeccCCCcCCCccChhhhccCCcCchhcHHHHHHHHHHHHhCCCCCCCCCCHHHH--HHHHHcC---------
Confidence 5432211 122345778999999998899999999999999999998 9999987544211 1111100
Q ss_pred cchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhhCCC
Q 001384 1036 IPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKILPH 1086 (1088)
Q Consensus 1036 ~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i~~~ 1086 (1088)
...+.+...+..+.+++.+|++.||++||++.||++.|+++++.
T Consensus 267 -------~~~~~~~~~~~~l~~li~~cl~~dp~~RPs~~~i~~~L~~~~~~ 310 (373)
T 2qol_A 267 -------YRLPPPMDCPAALYQLMLDCWQKDRNNRPKFEQIVSILDKLIRN 310 (373)
T ss_dssp -------EECCCCTTCBHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred -------CCCCCCccccHHHHHHHHHHhCcChhhCcCHHHHHHHHHHHHhC
Confidence 00011223446788999999999999999999999999998654
No 71
>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}
Probab=100.00 E-value=2.6e-39 Score=367.99 Aligned_cols=249 Identities=27% Similarity=0.347 Sum_probs=201.8
Q ss_pred cCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccC---ccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCe
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREG---LEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSE 879 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~ 879 (1088)
.++|++.+.||+|+||+||+|+++ +++.||||++.+.. ....+.+..|.+++.... +||||+++++++.+.+.
T Consensus 22 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~---~hp~Iv~l~~~~~~~~~ 98 (353)
T 3txo_A 22 IDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLAR---NHPFLTQLFCCFQTPDR 98 (353)
T ss_dssp -CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTT---TCTTBCCEEEEEECSSE
T ss_pred hhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhcc---CCCceeeEEEEEEeCCE
Confidence 468999999999999999999976 68999999998642 223356778888887632 79999999999999999
Q ss_pred EEEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccceeec
Q 001384 880 KILVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARVVS 959 (1088)
Q Consensus 880 ~~lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~~ 959 (1088)
.|+||||+++|+|.++++....+++.+++.++.||+.||+|||++ +|+||||||+||+++.++++||+|||+++...
T Consensus 99 ~~lv~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NILl~~~g~ikL~DFG~a~~~~ 175 (353)
T 3txo_A 99 LFFVMEFVNGGDLMFHIQKSRRFDEARARFYAAEIISALMFLHDK---GIIYRDLKLDNVLLDHEGHCKLADFGMCKEGI 175 (353)
T ss_dssp EEEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCSC
T ss_pred EEEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CCcccCCCHHHEEECCCCCEEEccccceeecc
Confidence 999999999999999999888999999999999999999999999 99999999999999999999999999997543
Q ss_pred CCCCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCCCCCccccchh
Q 001384 960 AGDSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRHGPGRAVIPVV 1039 (1088)
Q Consensus 960 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1039 (1088)
. ........+||+.|+|||++.+..++.++||||+||++|||++|+.||.+..... ....+.....
T Consensus 176 ~-~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~~--~~~~i~~~~~----------- 241 (353)
T 3txo_A 176 C-NGVTTATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFEAENEDD--LFEAILNDEV----------- 241 (353)
T ss_dssp C----------CCGGGCCHHHHHHHHCTTHHHHHHHHHHHHHHHHSSCSSCCSSHHH--HHHHHHHCCC-----------
T ss_pred c-CCccccccCCCcCeEChhhcCCCCcCCccCCCcchHHHHHHHhCCCCCCCCCHHH--HHHHHHcCCC-----------
Confidence 2 2223445689999999999998899999999999999999999999998765421 1222221000
Q ss_pred hcCCCccccHHHHHHHHHHHhhhcccCCCCCCCH------HHHHH
Q 001384 1040 LLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNV------KEVLA 1078 (1088)
Q Consensus 1040 ~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~------~eil~ 1078 (1088)
..+......+.+++.+|++.||++||++ +|+++
T Consensus 242 ------~~p~~~~~~~~~li~~lL~~dP~~R~~~~~~~~~~~il~ 280 (353)
T 3txo_A 242 ------VYPTWLHEDATGILKSFMTKNPTMRLGSLTQGGEHAILR 280 (353)
T ss_dssp ------CCCTTSCHHHHHHHHHHTCSSGGGSTTSGGGTCTHHHHT
T ss_pred ------CCCCCCCHHHHHHHHHHhhhCHHHccCCcccCCHHHHhh
Confidence 0111233567889999999999999998 66654
No 72
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Probab=100.00 E-value=1.8e-39 Score=383.55 Aligned_cols=256 Identities=27% Similarity=0.414 Sum_probs=212.4
Q ss_pred cCCCCccceecccCceEEEEEEeCCCcEEEEEEccccCccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeEEEE
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLPDGREVAVKKLQREGLEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEKILV 883 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~~lv 883 (1088)
.++|++.+.||+|+||.||+|.++++..||||+++... ...+.+.+|++++++ ++||||+++++++. ....++|
T Consensus 187 ~~~~~~~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~----l~h~~iv~l~~~~~-~~~~~lv 260 (454)
T 1qcf_A 187 RESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGS-MSVEAFLAEANVMKT----LQHDKLVKLHAVVT-KEPIYII 260 (454)
T ss_dssp GGGEEEEEEEECCSSEEEEEEEETTTEEEEEEEECTTS-BCHHHHHHHHHHHTT----CCCTTBCCEEEEEC-SSSCEEE
T ss_pred hHHeEEEEEcccCCceEEEEEEECCccEEEEEEecCCC-ccHHHHHHHHHHHhh----CCCCCEeeEEEEEe-CCccEEE
Confidence 45788899999999999999999888999999998653 456789999999987 67999999999986 5678999
Q ss_pred EEecCCCCHHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccceeecCC
Q 001384 884 YEYMEGGSLEDIISDR--TRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARVVSAG 961 (1088)
Q Consensus 884 ~e~~~~gsL~~~l~~~--~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~~~~ 961 (1088)
|||+++|+|.++++.. ..+++.+++.++.||+.||+|||++ +|+||||||+||+++.++.+||+|||+++.....
T Consensus 261 ~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~~~ 337 (454)
T 1qcf_A 261 TEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQR---NYIHRDLRAANILVSASLVCKIADFGLARVIEDN 337 (454)
T ss_dssp ECCCTTCBHHHHHHSHHHHTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCSGGGEEECTTCCEEECSTTGGGGBCCH
T ss_pred EeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCCHHHEEECCCCcEEEeeCCCceEcCCC
Confidence 9999999999999754 3689999999999999999999999 9999999999999999999999999999876432
Q ss_pred CCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHh-CCcCCCCCchhHHHHHHhhhccCCCCCCccccchhh
Q 001384 962 DSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELAT-GRRALEGGEECLVEWGRRVMGYGRHGPGRAVIPVVL 1040 (1088)
Q Consensus 962 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1040 (1088)
.........++..|+|||++....++.++||||||+++|||++ |+.||.+...... ......
T Consensus 338 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t~g~~P~~~~~~~~~--~~~i~~--------------- 400 (454)
T 1qcf_A 338 EYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPEV--IRALER--------------- 400 (454)
T ss_dssp HHHTTCSSSSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHH--HHHHHH---------------
T ss_pred ceeccCCCcccccccCHHHhccCCCCcHHHHHhHHHHHHHHHhCCCCCCCCCCHHHH--HHHHHc---------------
Confidence 2222233456789999999988899999999999999999999 9999987543211 111110
Q ss_pred cCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhhCCC
Q 001384 1041 LGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKILPH 1086 (1088)
Q Consensus 1041 ~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i~~~ 1086 (1088)
+...+.+..++.++.+++.+|++.||++||++++|++.|+++...
T Consensus 401 -~~~~~~~~~~~~~l~~li~~cl~~dp~~RPt~~~i~~~L~~~~~~ 445 (454)
T 1qcf_A 401 -GYRMPRPENCPEELYNIMMRCWKNRPEERPTFEYIQSVLDDFYTA 445 (454)
T ss_dssp -TCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSSSS
T ss_pred -CCCCCCCCCCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHHHhc
Confidence 001111233456788999999999999999999999999998754
No 73
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Probab=100.00 E-value=1.6e-39 Score=374.50 Aligned_cols=256 Identities=26% Similarity=0.381 Sum_probs=210.1
Q ss_pred cCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCcc-chHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeEE
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGLE-GEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEKI 881 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~-~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~~ 881 (1088)
.++|++.+.||+|+||.||+|+++ +++.||||+++..... ....+.+|++++++ ++||||+++++++..++..+
T Consensus 113 ~~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~----l~hpniv~~~~~~~~~~~~~ 188 (377)
T 3cbl_A 113 HEDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQ----YSHPNIVRLIGVCTQKQPIY 188 (377)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHHHHHTT----CCCTTBCCEEEEECSSSSCE
T ss_pred hHHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccCCHHHHHHHHHHHHHHHh----CCCCCEEEEEEEEecCCCcE
Confidence 356888999999999999999986 7899999999865322 23468889999987 67999999999999999999
Q ss_pred EEEEecCCCCHHHHHhhcC-CCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccceeecC
Q 001384 882 LVYEYMEGGSLEDIISDRT-RLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARVVSA 960 (1088)
Q Consensus 882 lv~e~~~~gsL~~~l~~~~-~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~~~ 960 (1088)
+||||+++|+|.++++... .+++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++....
T Consensus 189 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~Nil~~~~~~~kl~DfG~s~~~~~ 265 (377)
T 3cbl_A 189 IVMELVQGGDFLTFLRTEGARLRVKTLLQMVGDAAAGMEYLESK---CCIHRDLAARNCLVTEKNVLKISDFGMSREEAD 265 (377)
T ss_dssp EEEECCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCGGGCEECTT
T ss_pred EEEEcCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CcCCcccCHHHEEEcCCCcEEECcCCCceecCC
Confidence 9999999999999997654 699999999999999999999999 999999999999999999999999999986543
Q ss_pred CCCccc-ccccccccccCccccCCCCCCcchhHHHHHHHHHHHHh-CCcCCCCCchhH-HHHHHhhhccCCCCCCccccc
Q 001384 961 GDSHVS-TTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELAT-GRRALEGGEECL-VEWGRRVMGYGRHGPGRAVIP 1037 (1088)
Q Consensus 961 ~~~~~~-~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~ellt-g~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 1037 (1088)
...... ....++..|+|||.+....++.++||||||+++|||++ |+.||.+..... .+.....
T Consensus 266 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~t~g~~p~~~~~~~~~~~~~~~~-------------- 331 (377)
T 3cbl_A 266 GVYAASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPNLSNQQTREFVEKG-------------- 331 (377)
T ss_dssp SEEECCSSCCEEEGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCSSTTSCHHHHHHHHHTT--------------
T ss_pred CceeecCCCCCCCcCcCCHhHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcC--------------
Confidence 221111 12345778999999988899999999999999999998 999998764421 1111110
Q ss_pred hhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhhCC
Q 001384 1038 VVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKILP 1085 (1088)
Q Consensus 1038 ~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i~~ 1085 (1088)
...+.+..++.++.+++.+||+.||++||++++|++.|+++.+
T Consensus 332 -----~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i~~ 374 (377)
T 3cbl_A 332 -----GRLPCPELCPDAVFRLMEQCWAYEPGQRPSFSTIYQELQSIRK 374 (377)
T ss_dssp -----CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred -----CCCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHh
Confidence 0111122344678899999999999999999999999998853
No 74
>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.6e-38 Score=358.59 Aligned_cols=250 Identities=22% Similarity=0.340 Sum_probs=207.2
Q ss_pred CCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCcc------chHHHHHHHHHHhCCCCCCCCCceeEEeeEEecC
Q 001384 805 GKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGLE------GEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDG 877 (1088)
Q Consensus 805 ~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~------~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~ 877 (1088)
++|++.+.||+|+||.||+|+++ +|+.||+|++...... ..+.+.+|++++.. ++||||+++++++.++
T Consensus 11 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~----l~hp~iv~~~~~~~~~ 86 (326)
T 2y0a_A 11 DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKE----IQHPNVITLHEVYENK 86 (326)
T ss_dssp HHEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHH----CCCTTBCCEEEEEECS
T ss_pred cceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHh----CCCCCCCcEEEEEEeC
Confidence 46899999999999999999976 6899999999765322 35678999999997 6799999999999999
Q ss_pred CeEEEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCC----CEEEeecc
Q 001384 878 SEKILVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEG----KALVTDFG 953 (1088)
Q Consensus 878 ~~~~lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~----~~kl~Dfg 953 (1088)
...++||||+++|+|.+++.....+++.+++.++.|++.||+|||++ +|+||||||+||+++.++ .+||+|||
T Consensus 87 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg 163 (326)
T 2y0a_A 87 TDVILILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVYYLHSL---QIAHFDLKPENIMLLDRNVPKPRIKIIDFG 163 (326)
T ss_dssp SEEEEEEECCCSCBHHHHHTTSSCCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESCSSSSSCCEEECCCT
T ss_pred CEEEEEEEcCCCCCHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHC---CeEcCCCCHHHEEEecCCCCCCCEEEEECC
Confidence 99999999999999999998888899999999999999999999999 999999999999999887 89999999
Q ss_pred cceeecCCCCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCCCCCc
Q 001384 954 LARVVSAGDSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRHGPGR 1033 (1088)
Q Consensus 954 ~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 1033 (1088)
+++...... ......||+.|+|||++.+..++.++||||+||++|+|++|+.||.+..............+.
T Consensus 164 ~a~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~------ 235 (326)
T 2y0a_A 164 LAHKIDFGN--EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYE------ 235 (326)
T ss_dssp TCEECCTTS--CCCCCCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHHTCCC------
T ss_pred CCeECCCCC--ccccccCCcCcCCceeecCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHhcCCC------
Confidence 998765332 233457999999999999889999999999999999999999999875442111111111000
Q ss_pred cccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1034 AVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1034 ~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
.+... .......+.+++.+|++.||++||++.|+++
T Consensus 236 --~~~~~-------~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 271 (326)
T 2y0a_A 236 --FEDEY-------FSNTSALAKDFIRRLLVKDPKKRMTIQDSLQ 271 (326)
T ss_dssp --CCHHH-------HTTSCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred --cCccc-------cccCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence 00000 1122356788999999999999999999986
No 75
>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=1.3e-38 Score=358.17 Aligned_cols=250 Identities=22% Similarity=0.266 Sum_probs=207.0
Q ss_pred cCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeEEE
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGLEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEKIL 882 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~~l 882 (1088)
.++|++.+.||+|+||.||+|++. +++.||+|++... ......+.+|++++.. ++||||+++++++.+.+..++
T Consensus 4 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~-~~~~~~~~~E~~~l~~----l~hpnIv~~~~~~~~~~~~~l 78 (321)
T 1tki_A 4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVK-GTDQVLVKKEISILNI----ARHRNILHLHESFESMEELVM 78 (321)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCC-THHHHHHHHHHHHHHH----SCCTTBCCEEEEEEETTEEEE
T ss_pred hhceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecC-cccHHHHHHHHHHHHh----CCCCCCCeEeEEEecCCEEEE
Confidence 468999999999999999999976 6889999998754 2344568899999986 679999999999999999999
Q ss_pred EEEecCCCCHHHHHhhcC-CCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcC--CCCEEEeecccceeec
Q 001384 883 VYEYMEGGSLEDIISDRT-RLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDK--EGKALVTDFGLARVVS 959 (1088)
Q Consensus 883 v~e~~~~gsL~~~l~~~~-~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~--~~~~kl~Dfg~a~~~~ 959 (1088)
||||+++|+|.+++.... .+++.+++.++.|++.||+|||++ +|+||||||+||+++. ++.+||+|||+++...
T Consensus 79 v~e~~~g~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~---givH~Dlkp~NIl~~~~~~~~~kl~Dfg~a~~~~ 155 (321)
T 1tki_A 79 IFEFISGLDIFERINTSAFELNEREIVSYVHQVCEALQFLHSH---NIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLK 155 (321)
T ss_dssp EECCCCCCBHHHHHTSSSCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSCCCEEECCCTTCEECC
T ss_pred EEEeCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CCCcCCCCHHHEEEccCCCCCEEEEECCCCeECC
Confidence 999999999999997654 699999999999999999999999 9999999999999997 7899999999998875
Q ss_pred CCCCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCCCCCccccchh
Q 001384 960 AGDSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRHGPGRAVIPVV 1039 (1088)
Q Consensus 960 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1039 (1088)
... ......||+.|+|||++.+..++.++||||+|+++|+|++|..||.+..... ........... .+..
T Consensus 156 ~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~--~~~~i~~~~~~------~~~~ 225 (321)
T 1tki_A 156 PGD--NFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETNQQ--IIENIMNAEYT------FDEE 225 (321)
T ss_dssp TTC--EEEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSHHH--HHHHHHHTCCC------CCHH
T ss_pred CCC--ccccccCChhhcCcHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCcCCCHHH--HHHHHHcCCCC------CChh
Confidence 432 2345678999999999998889999999999999999999999998764421 11111110000 0000
Q ss_pred hcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1040 LLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1040 ~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
.....+.++.+++.+|++.||++||++.|+++
T Consensus 226 -------~~~~~s~~~~~li~~~L~~dp~~Rpt~~e~l~ 257 (321)
T 1tki_A 226 -------AFKEISIEAMDFVDRLLVKERKSRMTASEALQ 257 (321)
T ss_dssp -------HHTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred -------hhccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 01122457889999999999999999999986
No 76
>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7
Probab=100.00 E-value=3.6e-39 Score=367.47 Aligned_cols=260 Identities=27% Similarity=0.397 Sum_probs=212.3
Q ss_pred HcCCCCccceecccCceEEEEEEeC------CCcEEEEEEccccCc-cchHHHHHHHHHHhCCCCCCCCCceeEEeeEEe
Q 001384 803 ATGKFSEDRIIGKGGFGTVYRGVLP------DGREVAVKKLQREGL-EGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCL 875 (1088)
Q Consensus 803 ~~~~~~~~~~LG~G~~g~Vy~~~~~------~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~ 875 (1088)
..++|++.+.||+|+||.||+|++. +++.||||+++.... ...+.+.+|++++++ ++||||+++++++.
T Consensus 45 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~----l~hp~iv~~~~~~~ 120 (343)
T 1luf_A 45 PRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAE----FDNPNIVKLLGVCA 120 (343)
T ss_dssp CGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHT----CCCTTBCCEEEEEC
T ss_pred cHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHh----CCCCCEEEEEEEEc
Confidence 4578999999999999999999974 347899999986532 234678999999997 67999999999999
Q ss_pred cCCeEEEEEEecCCCCHHHHHhhc------------------------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEe
Q 001384 876 DGSEKILVYEYMEGGSLEDIISDR------------------------TRLTWRRRLDIAIDVARALVFLHHECYPPIVH 931 (1088)
Q Consensus 876 ~~~~~~lv~e~~~~gsL~~~l~~~------------------------~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH 931 (1088)
+++..++||||+++|+|.++++.. ..+++.+++.++.||+.||+|||++ +|+|
T Consensus 121 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH~~---~ivH 197 (343)
T 1luf_A 121 VGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSER---KFVH 197 (343)
T ss_dssp SSSSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHT---TCCC
T ss_pred cCCceEEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHhC---Ceec
Confidence 999999999999999999999763 4689999999999999999999999 9999
Q ss_pred cCCCCCCEEEcCCCCEEEeecccceeecCCCC-cccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHh-CCcCC
Q 001384 932 RDVKASNVLLDKEGKALVTDFGLARVVSAGDS-HVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELAT-GRRAL 1009 (1088)
Q Consensus 932 ~DLkp~NIll~~~~~~kl~Dfg~a~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~ellt-g~~p~ 1009 (1088)
|||||+||+++.++.+||+|||+++....... .......+|+.|+|||.+.+..++.++||||||+++|||++ |..||
T Consensus 198 ~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~ 277 (343)
T 1luf_A 198 RDLATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPY 277 (343)
T ss_dssp SCCSGGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTT
T ss_pred CCCCcceEEECCCCeEEEeecCCCcccccCccccccCCCcccceecChhhhccCCcCcccccHHHHHHHHHHHhcCCCcC
Confidence 99999999999999999999999986543222 12334567889999999888899999999999999999999 99999
Q ss_pred CCCchhHHHHHHhhhccCCCCCCccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhhCCCC
Q 001384 1010 EGGEECLVEWGRRVMGYGRHGPGRAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKILPHC 1087 (1088)
Q Consensus 1010 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i~~~~ 1087 (1088)
.+...... ........ ....+...+.++.+++.+|++.||++||++.|+++.|+++.+.+
T Consensus 278 ~~~~~~~~--~~~~~~~~----------------~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~~~~~L~~~~~~~ 337 (343)
T 1luf_A 278 YGMAHEEV--IYYVRDGN----------------ILACPENCPLELYNLMRLCWSKLPADRPSFCSIHRILQRMCERA 337 (343)
T ss_dssp TTSCHHHH--HHHHHTTC----------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTC--
T ss_pred CCCChHHH--HHHHhCCC----------------cCCCCCCCCHHHHHHHHHHcccCcccCCCHHHHHHHHHHHHhhh
Confidence 87544211 11111000 00112233457889999999999999999999999999998754
No 77
>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}
Probab=100.00 E-value=4.8e-39 Score=369.73 Aligned_cols=245 Identities=24% Similarity=0.316 Sum_probs=200.8
Q ss_pred CCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCccc---hHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeE
Q 001384 805 GKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGLEG---EREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEK 880 (1088)
Q Consensus 805 ~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~---~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~ 880 (1088)
++|++.++||+|+||+||+|+++ +++.||+|++++..... ...+..|..++.+. .+||||+++++++.++...
T Consensus 52 ~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~---~~hp~Iv~l~~~~~~~~~~ 128 (396)
T 4dc2_A 52 QDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQA---SNHPFLVGLHSCFQTESRL 128 (396)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHH---TTCTTBCCEEEEEECSSEE
T ss_pred hHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhc---CCCCCcCeeEEEEEECCEE
Confidence 46899999999999999999976 57899999998653222 23577888888753 3799999999999999999
Q ss_pred EEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccceeecC
Q 001384 881 ILVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARVVSA 960 (1088)
Q Consensus 881 ~lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~~~ 960 (1088)
|+||||+++|+|.+++++...+++..++.++.||+.||+|||++ +|+||||||+||+++.++.+||+|||+++....
T Consensus 129 ~lV~E~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~LH~~---givHrDLKp~NILl~~~g~ikL~DFGla~~~~~ 205 (396)
T 4dc2_A 129 FFVIEYVNGGDLMFHMQRQRKLPEEHARFYSAEISLALNYLHER---GIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLR 205 (396)
T ss_dssp EEEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCCCC
T ss_pred EEEEEcCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CEEeccCCHHHEEECCCCCEEEeecceeeeccc
Confidence 99999999999999999888999999999999999999999999 999999999999999999999999999986332
Q ss_pred CCCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchh------HHH-HHHhhhccCCCCCCc
Q 001384 961 GDSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEEC------LVE-WGRRVMGYGRHGPGR 1033 (1088)
Q Consensus 961 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~------~~~-~~~~~~~~~~~~~~~ 1033 (1088)
. .......+||+.|+|||++.+..++.++||||+||++|||++|+.||...... ..+ ....+.
T Consensus 206 ~-~~~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwslGvllyell~G~~Pf~~~~~~~~~~~~~~~~~~~~i~--------- 275 (396)
T 4dc2_A 206 P-GDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVIL--------- 275 (396)
T ss_dssp T-TCCBCCCCBCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSTTTTC------CCHHHHHHHHH---------
T ss_pred C-CCccccccCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCcccccccccchhhHHHHHHHHh---------
Confidence 2 22345578999999999999999999999999999999999999999743210 011 111111
Q ss_pred cccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCH
Q 001384 1034 AVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNV 1073 (1088)
Q Consensus 1034 ~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~ 1073 (1088)
......+.....++.+++.+|++.||++||++
T Consensus 276 --------~~~~~~p~~~s~~~~~li~~lL~~dP~~R~~~ 307 (396)
T 4dc2_A 276 --------EKQIRIPRSLSVKAASVLKSFLNKDPKERLGC 307 (396)
T ss_dssp --------HCCCCCCTTSCHHHHHHHHHHTCSCTTTSTTC
T ss_pred --------ccccCCCCcCCHHHHHHHHHHhcCCHhHcCCC
Confidence 01111122334578889999999999999996
No 78
>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*
Probab=100.00 E-value=3.4e-39 Score=356.58 Aligned_cols=256 Identities=26% Similarity=0.370 Sum_probs=197.3
Q ss_pred cCCCCccceecccCceEEEEEEeCC----CcEEEEEEccccCc-cchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCC
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLPD----GREVAVKKLQREGL-EGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGS 878 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~~----~~~vavK~~~~~~~-~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~ 878 (1088)
.++|++.+.||+|+||.||+|++.. +..||+|++..... ...+.+.+|+.++++ ++||||+++++++. ++
T Consensus 14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~----l~h~~iv~~~~~~~-~~ 88 (281)
T 1mp8_A 14 RERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQ----FDHPHIVKLIGVIT-EN 88 (281)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHT----CCCTTBCCEEEEEC-SS
T ss_pred hHHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHHh----CCCCccceEEEEEc-cC
Confidence 3578999999999999999999743 45799999876432 234578899999987 67999999999984 56
Q ss_pred eEEEEEEecCCCCHHHHHhhcC-CCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeeccccee
Q 001384 879 EKILVYEYMEGGSLEDIISDRT-RLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARV 957 (1088)
Q Consensus 879 ~~~lv~e~~~~gsL~~~l~~~~-~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~ 957 (1088)
..++||||+++|+|.++++... .+++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++.
T Consensus 89 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~ 165 (281)
T 1mp8_A 89 PVWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLESK---RFVHRDIAARNVLVSSNDCVKLGDFGLSRY 165 (281)
T ss_dssp SCEEEEECCTTEEHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECC------
T ss_pred ccEEEEecCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC---CeecccccHHHEEECCCCCEEECccccccc
Confidence 7889999999999999997654 699999999999999999999999 999999999999999999999999999987
Q ss_pred ecCCCCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHh-CCcCCCCCchhHHHHHHhhhccCCCCCCcccc
Q 001384 958 VSAGDSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELAT-GRRALEGGEECLVEWGRRVMGYGRHGPGRAVI 1036 (1088)
Q Consensus 958 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1036 (1088)
.............+++.|+|||.+....++.++||||+|+++|||++ |..||.+...... ......
T Consensus 166 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~pf~~~~~~~~--~~~i~~----------- 232 (281)
T 1mp8_A 166 MEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDV--IGRIEN----------- 232 (281)
T ss_dssp -------------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGH--HHHHHT-----------
T ss_pred cCcccccccccCCCcccccChhhcccCCCCCccCchHHHHHHHHHHhcCCCCCCcCCHHHH--HHHHHc-----------
Confidence 65443333344567789999999988899999999999999999997 9999987543211 111110
Q ss_pred chhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhhCC
Q 001384 1037 PVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKILP 1085 (1088)
Q Consensus 1037 ~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i~~ 1085 (1088)
+.....+...+..+.+++.+|++.||++||++.|+++.|+++++
T Consensus 233 -----~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~ 276 (281)
T 1mp8_A 233 -----GERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILE 276 (281)
T ss_dssp -----TCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred -----CCCCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHH
Confidence 00011122344678889999999999999999999999999864
No 79
>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.3e-39 Score=361.37 Aligned_cols=246 Identities=24% Similarity=0.327 Sum_probs=204.2
Q ss_pred cCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccC---ccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCe
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREG---LEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSE 879 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~ 879 (1088)
.++|++.+.||+|+||+||+|++. +++.||||++.+.. ......+.+|+++++. ++||||+++++++.++..
T Consensus 8 i~~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~----l~hpnIv~l~~~~~~~~~ 83 (336)
T 3h4j_B 8 IGPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKL----LRHPHIIKLYDVITTPTD 83 (336)
T ss_dssp ETTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTT----CCCTTBCCEEEEEECSSE
T ss_pred cCCEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHh----CCCCCCCeEEEEEEeCCE
Confidence 468999999999999999999974 78999999987542 2234578899999986 679999999999999999
Q ss_pred EEEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccceeec
Q 001384 880 KILVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARVVS 959 (1088)
Q Consensus 880 ~~lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~~ 959 (1088)
.++||||+ +|+|.+++....++++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||++....
T Consensus 84 ~~lv~E~~-~g~l~~~l~~~~~l~~~~~~~i~~qi~~aL~~LH~~---givH~Dlkp~NIll~~~~~~kl~DFG~s~~~~ 159 (336)
T 3h4j_B 84 IVMVIEYA-GGELFDYIVEKKRMTEDEGRRFFQQIICAIEYCHRH---KIVHRDLKPENLLLDDNLNVKIADFGLSNIMT 159 (336)
T ss_dssp EEEEECCC-CEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHH---TCCCCCCSTTTEEECTTCCEEECCSSCTBTTT
T ss_pred EEEEEECC-CCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCchhhEEEcCCCCEEEEEeccceecc
Confidence 99999999 679999998888999999999999999999999999 99999999999999999999999999998654
Q ss_pred CCCCcccccccccccccCccccCCCCC-CcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCCCCCccccch
Q 001384 960 AGDSHVSTTIAGTVGYVAPEYGQTWQA-TTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRHGPGRAVIPV 1038 (1088)
Q Consensus 960 ~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1038 (1088)
.. .......||+.|+|||++.+..+ +.++||||+||++|+|++|+.||.+.... .....+
T Consensus 160 ~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~---------------~~~~~i-- 220 (336)
T 3h4j_B 160 DG--NFLKTSCGSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPFDDEFIP---------------NLFKKV-- 220 (336)
T ss_dssp TS--BTTCCCTTSTTTSCGGGSCCSGGGCHHHHHHHHHHHHHHHHHSSCSSBCSSST---------------TCBCCC--
T ss_pred CC--cccccccCCcCcCCHHHHcCCCCCCCccchhHHHHHHHHHHhCCCCCCCccHH---------------HHHHHH--
Confidence 32 22345679999999999988776 78999999999999999999999764220 000000
Q ss_pred hhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1039 VLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1039 ~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
.......+......+.+++.+|++.||.+|||++|+++
T Consensus 221 --~~~~~~~p~~~s~~~~~li~~~L~~dP~~Rpt~~eil~ 258 (336)
T 3h4j_B 221 --NSCVYVMPDFLSPGAQSLIRRMIVADPMQRITIQEIRR 258 (336)
T ss_dssp --CSSCCCCCTTSCHHHHHHHHTTSCSSGGGSCCHHHHTT
T ss_pred --HcCCCCCcccCCHHHHHHHHHHcCCChhHCcCHHHHHh
Confidence 00011112233457888999999999999999999975
No 80
>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7
Probab=100.00 E-value=1.7e-38 Score=356.20 Aligned_cols=244 Identities=28% Similarity=0.380 Sum_probs=205.8
Q ss_pred CCCCccceecccCceEEEEEEeC-CCcEEEEEEccccC---ccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeE
Q 001384 805 GKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREG---LEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEK 880 (1088)
Q Consensus 805 ~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~ 880 (1088)
++|++.+.||+|+||+||+|+.+ +|+.||+|++.+.. ....+.+.+|..+++. ++||||+++++++.+....
T Consensus 6 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~----l~hp~Iv~~~~~~~~~~~~ 81 (318)
T 1fot_A 6 QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSI----VTHPFIIRMWGTFQDAQQI 81 (318)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHS----CCBTTBCCEEEEEECSSEE
T ss_pred HHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhh----CCCCCCceEeEEEEeCCEE
Confidence 46889999999999999999976 68999999997642 2334567889999986 6799999999999999999
Q ss_pred EEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccceeecC
Q 001384 881 ILVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARVVSA 960 (1088)
Q Consensus 881 ~lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~~~ 960 (1088)
|+||||+++|+|.++++....+++..++.++.||+.||+|||++ +|+||||||+||+++.++.+||+|||+++....
T Consensus 82 ~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~~kL~Dfg~a~~~~~ 158 (318)
T 1fot_A 82 FMIMDYIEGGELFSLLRKSQRFPNPVAKFYAAEVCLALEYLHSK---DIIYRDLKPENILLDKNGHIKITDFGFAKYVPD 158 (318)
T ss_dssp EEEECCCCSCBHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEECTTSCEEECCCSSCEECSS
T ss_pred EEEEeCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChheEEEcCCCCEEEeecCcceecCC
Confidence 99999999999999999888899999999999999999999999 999999999999999999999999999987543
Q ss_pred CCCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCCCCCccccchhh
Q 001384 961 GDSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRHGPGRAVIPVVL 1040 (1088)
Q Consensus 961 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1040 (1088)
......||+.|+|||++.+..++.++||||+||++|||++|+.||.+.... +....+.....
T Consensus 159 ----~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~--~~~~~i~~~~~------------ 220 (318)
T 1fot_A 159 ----VTYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNTM--KTYEKILNAEL------------ 220 (318)
T ss_dssp ----CBCCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHH--HHHHHHHHCCC------------
T ss_pred ----ccccccCCccccCHhHhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCHH--HHHHHHHhCCC------------
Confidence 233467999999999999999999999999999999999999999875432 11122221000
Q ss_pred cCCCccccHHHHHHHHHHHhhhcccCCCCCC-----CHHHHHH
Q 001384 1041 LGSGLAEGAEEMSELLRIGVRCTAEAPNARP-----NVKEVLA 1078 (1088)
Q Consensus 1041 ~~~~~~~~~~~~~~l~~li~~cl~~dP~~RP-----s~~eil~ 1078 (1088)
..+.....++.+++.+|++.||++|| +++|+++
T Consensus 221 -----~~p~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~~i~~ 258 (318)
T 1fot_A 221 -----RFPPFFNEDVKDLLSRLITRDLSQRLGNLQNGTEDVKN 258 (318)
T ss_dssp -----CCCTTSCHHHHHHHHHHTCSCTTTCTTSSTTTTHHHHT
T ss_pred -----CCCCCCCHHHHHHHHHHhccCHHHcCCCcCCCHHHHhc
Confidence 00112335688899999999999999 8888873
No 81
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}
Probab=100.00 E-value=2.8e-38 Score=369.75 Aligned_cols=253 Identities=23% Similarity=0.295 Sum_probs=206.7
Q ss_pred HcCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCcc--chHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCe
Q 001384 803 ATGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGLE--GEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSE 879 (1088)
Q Consensus 803 ~~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~--~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~ 879 (1088)
..++|++.+.||+|+||+||+|.+. +|+.||+|++...... ..+.+.+|+++++. ++||||+++++++.+++.
T Consensus 9 ~~~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~----l~hpnIv~l~~~~~~~~~ 84 (444)
T 3soa_A 9 FTEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRL----LKHPNIVRLHDSISEEGH 84 (444)
T ss_dssp HHHHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHH----CCBTTBCCEEEEEECSSE
T ss_pred ccCCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHh----CCCcCCCeEEEEEEECCE
Confidence 4567999999999999999999975 7899999999765432 23568899999987 679999999999999999
Q ss_pred EEEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEc---CCCCEEEeecccce
Q 001384 880 KILVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLD---KEGKALVTDFGLAR 956 (1088)
Q Consensus 880 ~~lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~---~~~~~kl~Dfg~a~ 956 (1088)
.|+||||+++|+|.+++.....+++.++..++.||+.||+|||++ +|+||||||+||+++ .++.+||+|||+++
T Consensus 85 ~~lv~E~~~gg~L~~~i~~~~~~~e~~~~~i~~qil~aL~~lH~~---givHrDlKp~NIll~~~~~~~~vkL~DFG~a~ 161 (444)
T 3soa_A 85 HYLIFDLVTGGELFEDIVAREYYSEADASHCIQQILEAVLHCHQM---GVVHRNLKPENLLLASKLKGAAVKLADFGLAI 161 (444)
T ss_dssp EEEEECCCBCCBHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSSTTEEESBSSTTCCEEECCCSSCB
T ss_pred EEEEEEeCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEEeccCCCCcEEEccCceeE
Confidence 999999999999999999988999999999999999999999999 999999999999998 46789999999998
Q ss_pred eecCCCCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCCCCCcccc
Q 001384 957 VVSAGDSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRHGPGRAVI 1036 (1088)
Q Consensus 957 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1036 (1088)
...... .......||+.|+|||++.+..++.++||||+||++|+|++|..||.+...... ............
T Consensus 162 ~~~~~~-~~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyell~G~~Pf~~~~~~~~--~~~i~~~~~~~~----- 233 (444)
T 3soa_A 162 EVEGEQ-QAWFGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDEDQHRL--YQQIKAGAYDFP----- 233 (444)
T ss_dssp CCCTTC-CBCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHH--HHHHHHTCCCCC-----
T ss_pred EecCCC-ceeecccCCcccCCHHHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCccHHHH--HHHHHhCCCCCC-----
Confidence 765332 223456799999999999998999999999999999999999999987654221 111110000000
Q ss_pred chhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1037 PVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1037 ~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
. +.......++.+++.+|++.||++||++.|+++
T Consensus 234 ~--------~~~~~~s~~~~~li~~~L~~dP~~Rpta~e~L~ 267 (444)
T 3soa_A 234 S--------PEWDTVTPEAKDLINKMLTINPSKRITAAEALK 267 (444)
T ss_dssp T--------TTTTTSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred c--------cccccCCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence 0 001122356888999999999999999999986
No 82
>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B
Probab=100.00 E-value=1.9e-38 Score=362.82 Aligned_cols=252 Identities=23% Similarity=0.310 Sum_probs=207.2
Q ss_pred HcCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCcc--chHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCe
Q 001384 803 ATGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGLE--GEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSE 879 (1088)
Q Consensus 803 ~~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~--~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~ 879 (1088)
..++|++.+.||+|+||.||+|.++ +|+.||+|++...... ..+.+.+|+++++. ++||||+++++++.+++.
T Consensus 27 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~----l~hpnIv~~~~~~~~~~~ 102 (362)
T 2bdw_A 27 FSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRK----LQHPNIVRLHDSIQEESF 102 (362)
T ss_dssp HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHH----CCCTTBCCEEEEEECSSE
T ss_pred cccCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHh----CCCCCCCeEEEEEEeCCE
Confidence 3467999999999999999999976 6899999999765332 33568899999997 679999999999999999
Q ss_pred EEEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCC---CEEEeecccce
Q 001384 880 KILVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEG---KALVTDFGLAR 956 (1088)
Q Consensus 880 ~~lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~---~~kl~Dfg~a~ 956 (1088)
.|+||||+++|+|.+++.....+++.+++.++.||+.||+|||++ +|+||||||+||+++.++ .+||+|||+++
T Consensus 103 ~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~al~~lH~~---~ivH~Dlkp~NIll~~~~~~~~~kl~DfG~a~ 179 (362)
T 2bdw_A 103 HYLVFDLVTGGELFEDIVAREFYSEADASHCIQQILESIAYCHSN---GIVHRNLKPENLLLASKAKGAAVKLADFGLAI 179 (362)
T ss_dssp EEEEECCCCSCBHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEESCSSTTCCEEECCCTTCB
T ss_pred EEEEEecCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCchHHEEEecCCCCCCEEEeecCcce
Confidence 999999999999999998888899999999999999999999999 999999999999998654 59999999998
Q ss_pred eecCCCCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCCCCCcccc
Q 001384 957 VVSAGDSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRHGPGRAVI 1036 (1088)
Q Consensus 957 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1036 (1088)
...... ......||+.|+|||++.+..++.++||||+||++|+|++|+.||.+..... ....+........ .
T Consensus 180 ~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~~--~~~~i~~~~~~~~-~--- 251 (362)
T 2bdw_A 180 EVNDSE--AWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHR--LYAQIKAGAYDYP-S--- 251 (362)
T ss_dssp CCTTCC--SCCCSCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH--HHHHHHHTCCCCC-T---
T ss_pred EecCCc--ccccCCCCccccCHHHHccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCHHH--HHHHHHhCCCCCC-c---
Confidence 765322 2344679999999999999899999999999999999999999998764421 1111110000000 0
Q ss_pred chhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1037 PVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1037 ~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
........++.+++.+|++.||++||++.|+++
T Consensus 252 ---------~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 284 (362)
T 2bdw_A 252 ---------PEWDTVTPEAKSLIDSMLTVNPKKRITADQALK 284 (362)
T ss_dssp ---------TGGGGSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred ---------ccccCCCHHHHHHHHHHcCCChhhCcCHHHHhc
Confidence 001123456888999999999999999999875
No 83
>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*
Probab=100.00 E-value=7.2e-39 Score=360.85 Aligned_cols=252 Identities=24% Similarity=0.343 Sum_probs=205.7
Q ss_pred cCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCc-cchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeEE
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGL-EGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEKI 881 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~~ 881 (1088)
.++|++.+.||+|+||+||+|++. +++.||||++..... ...+.+.+|+.+++. ++||||+++++++.+++..+
T Consensus 6 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~----l~hpnIv~~~~~~~~~~~~~ 81 (323)
T 3tki_A 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKM----LNHENVVKFYGHRREGNIQY 81 (323)
T ss_dssp TTCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHH----CCCTTBCCEEEEEECSSEEE
T ss_pred hhhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEcccccchHHHHHHHHHHHHh----CCCCCCCeEEEEEecCCeEE
Confidence 368999999999999999999976 789999999875432 233568899999987 67999999999999999999
Q ss_pred EEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccceeecCC
Q 001384 882 LVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARVVSAG 961 (1088)
Q Consensus 882 lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~~~~ 961 (1088)
+||||+++|+|.++++....+++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++.+...
T Consensus 82 lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~LH~~---givH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~ 158 (323)
T 3tki_A 82 LFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGI---GITHRDIKPENLLLDERDNLKISDFGLATVFRYN 158 (323)
T ss_dssp EEEECCTTEEGGGGSBTTTBCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCTTCEECEET
T ss_pred EEEEcCCCCcHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHC---CccccccchHHEEEeCCCCEEEEEeeccceeccC
Confidence 9999999999999998888899999999999999999999999 9999999999999999999999999999876433
Q ss_pred CC-cccccccccccccCccccCCCCC-CcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCCCCCccccchh
Q 001384 962 DS-HVSTTIAGTVGYVAPEYGQTWQA-TTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRHGPGRAVIPVV 1039 (1088)
Q Consensus 962 ~~-~~~~~~~gt~~y~aPE~~~~~~~-~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1039 (1088)
.. .......||+.|+|||++.+..+ +.++||||+||++|+|++|+.||.........+..........
T Consensus 159 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~---------- 228 (323)
T 3tki_A 159 NRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYL---------- 228 (323)
T ss_dssp TEECCBCSCCSCGGGSCHHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSCTTSHHHHHHHTTCTTS----------
T ss_pred CcccccCCCccCcCccCcHHhccCCCCCCcccHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHhcccccC----------
Confidence 22 22345679999999999877665 7899999999999999999999987654323222222110000
Q ss_pred hcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1040 LLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1040 ~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
.........+.+++.+|++.||++||+++|+++
T Consensus 229 ------~~~~~~~~~~~~li~~~L~~dP~~R~t~~eil~ 261 (323)
T 3tki_A 229 ------NPWKKIDSAPLALLHKILVENPSARITIPDIKK 261 (323)
T ss_dssp ------TTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred ------CccccCCHHHHHHHHHHccCChhhCcCHHHHhh
Confidence 001223356788999999999999999999975
No 84
>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=100.00 E-value=3.6e-39 Score=353.43 Aligned_cols=255 Identities=29% Similarity=0.435 Sum_probs=211.9
Q ss_pred CCCCccceecccCceEEEEEEeCCCcEEEEEEccccCccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeEEEEE
Q 001384 805 GKFSEDRIIGKGGFGTVYRGVLPDGREVAVKKLQREGLEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEKILVY 884 (1088)
Q Consensus 805 ~~~~~~~~LG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~~lv~ 884 (1088)
++|++.+.||+|+||.||+|.+.+++.||+|++.... ...+.+.+|++++++ ++||||+++++++.+++..++||
T Consensus 8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~-~~~~~~~~e~~~l~~----l~h~~i~~~~~~~~~~~~~~lv~ 82 (267)
T 3t9t_A 8 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGA-MSEEDFIEEAEVMMK----LSHPKLVQLYGVCLEQAPICLVT 82 (267)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTT-BCHHHHHHHHHHHHT----CCCTTBCCEEEEECSSSSCEEEE
T ss_pred hheeeeeEecCCCceeEEEEEecCCCeEEEEEccccC-CCHHHHHHHHHHHHh----CCCCCEeeEEEEEccCCCeEEEE
Confidence 4688899999999999999999888999999998763 345678999999997 67999999999999999999999
Q ss_pred EecCCCCHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccceeecCCCC
Q 001384 885 EYMEGGSLEDIISDR-TRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARVVSAGDS 963 (1088)
Q Consensus 885 e~~~~gsL~~~l~~~-~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~~~~~~ 963 (1088)
||+++++|.++++.. ..+++.+++.++.|++.||+|||++ +++||||||+||+++.++.+||+|||.++.......
T Consensus 83 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~~ 159 (267)
T 3t9t_A 83 EFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEA---CVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQY 159 (267)
T ss_dssp CCCTTCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCCGGGEEECGGGCEEECCTTGGGGBCCHHH
T ss_pred eCCCCCcHHHHHhhCcccCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCchheEEECCCCCEEEcccccccccccccc
Confidence 999999999999765 4689999999999999999999999 999999999999999999999999999986543222
Q ss_pred cccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHh-CCcCCCCCchhHHHHHHhhhccCCCCCCccccchhhcC
Q 001384 964 HVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELAT-GRRALEGGEECLVEWGRRVMGYGRHGPGRAVIPVVLLG 1042 (1088)
Q Consensus 964 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1042 (1088)
.......++..|+|||...+..++.++||||+|+++|+|++ |+.||....... ..........
T Consensus 160 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~--~~~~i~~~~~-------------- 223 (267)
T 3t9t_A 160 TSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSE--VVEDISTGFR-------------- 223 (267)
T ss_dssp HSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHH--HHHHHHTTCC--------------
T ss_pred cccccccccccccChhhhcCCCccchhchhhhHHHHHHHhccCCCCCCCCCHHH--HHHHHhcCCc--------------
Confidence 22233456788999999988899999999999999999999 899998754321 1111110000
Q ss_pred CCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhhCC
Q 001384 1043 SGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKILP 1085 (1088)
Q Consensus 1043 ~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i~~ 1085 (1088)
...+......+.+++.+|++.||++||+++|+++.|+++.+
T Consensus 224 --~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~~ 264 (267)
T 3t9t_A 224 --LYKPRLASTHVYQIMNHCWRERPEDRPAFSRLLRQLAEIAE 264 (267)
T ss_dssp --CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred --CCCCccCcHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence 00112234568889999999999999999999999999864
No 85
>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}
Probab=100.00 E-value=4.8e-39 Score=363.08 Aligned_cols=260 Identities=28% Similarity=0.440 Sum_probs=196.4
Q ss_pred HcCCCCccceecccCceEEEEEEeCC-C---cEEEEEEccccC--ccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEec
Q 001384 803 ATGKFSEDRIIGKGGFGTVYRGVLPD-G---REVAVKKLQREG--LEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLD 876 (1088)
Q Consensus 803 ~~~~~~~~~~LG~G~~g~Vy~~~~~~-~---~~vavK~~~~~~--~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~ 876 (1088)
..++|++.+.||+|+||.||+|++.. + ..||||++.... ....+.+.+|++++++ ++||||+++++++..
T Consensus 21 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~----l~h~~iv~~~~~~~~ 96 (323)
T 3qup_A 21 PEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKE----FDHPHVAKLVGVSLR 96 (323)
T ss_dssp C---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTT----CCCTTBCCCCEEEEC
T ss_pred ChhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHH----CCCCceehhhceeec
Confidence 35689999999999999999999763 3 279999998653 2334678999999987 679999999999987
Q ss_pred CCeE------EEEEEecCCCCHHHHHhhcC------CCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCC
Q 001384 877 GSEK------ILVYEYMEGGSLEDIISDRT------RLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKE 944 (1088)
Q Consensus 877 ~~~~------~lv~e~~~~gsL~~~l~~~~------~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~ 944 (1088)
.... ++||||+++|+|.+++.... .+++.+++.++.|++.||+|||++ +|+||||||+||+++.+
T Consensus 97 ~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~---~ivH~Dikp~NIli~~~ 173 (323)
T 3qup_A 97 SRAKGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLSSR---NFIHRDLAARNCMLAED 173 (323)
T ss_dssp C-------CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTT
T ss_pred cccccCCCccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHHcC---CcccCCCCcceEEEcCC
Confidence 7655 99999999999999996533 589999999999999999999999 99999999999999999
Q ss_pred CCEEEeecccceeecCCCCc-ccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHh-CCcCCCCCchhHHHHHHh
Q 001384 945 GKALVTDFGLARVVSAGDSH-VSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELAT-GRRALEGGEECLVEWGRR 1022 (1088)
Q Consensus 945 ~~~kl~Dfg~a~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~ellt-g~~p~~~~~~~~~~~~~~ 1022 (1088)
+.+||+|||+++........ ......+++.|+|||.+.+..++.++||||+|+++|||++ |+.||.+...... ...
T Consensus 174 ~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~--~~~ 251 (323)
T 3qup_A 174 MTVCVADFGLSRKIYSGDYYRQGCASKLPVKWLALESLADNLYTVHSDVWAFGVTMWEIMTRGQTPYAGIENAEI--YNY 251 (323)
T ss_dssp SCEEECCCCC-----------------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGH--HHH
T ss_pred CCEEEeeccccccccccccccccccccCcccccCchhhcCCCCCCccchhhHHHHHHHHHhCCCCCccccChHHH--HHH
Confidence 99999999999876543322 2233456789999999998899999999999999999999 9999987544211 111
Q ss_pred hhccCCCCCCccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhhCCCC
Q 001384 1023 VMGYGRHGPGRAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKILPHC 1087 (1088)
Q Consensus 1023 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i~~~~ 1087 (1088)
... +.....+...+..+.+++.+|++.||++||++.|+++.|++++++.
T Consensus 252 ~~~----------------~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~l~~~ 300 (323)
T 3qup_A 252 LIG----------------GNRLKQPPECMEEVYDLMYQCWSADPKQRPSFTCLRMELENILGHL 300 (323)
T ss_dssp HHT----------------TCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHC-
T ss_pred Hhc----------------CCCCCCCCccCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHh
Confidence 110 0011112233467889999999999999999999999999998653
No 86
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Probab=100.00 E-value=5.1e-39 Score=383.17 Aligned_cols=256 Identities=25% Similarity=0.390 Sum_probs=214.2
Q ss_pred cCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeEEE
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGLEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEKIL 882 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~~l 882 (1088)
..+|++.+.||+|+||.||+|+++ ++..||||+++... ...+++.+|++++++ ++||||+++++++..+...++
T Consensus 219 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~----l~hpniv~l~~~~~~~~~~~l 293 (495)
T 1opk_A 219 RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-MEVEEFLKEAAVMKE----IKHPNLVQLLGVCTREPPFYI 293 (495)
T ss_dssp GGGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSS-SCHHHHHHHHHHHHH----CCCTTBCCEEEEECSSSSCEE
T ss_pred HHHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCcc-cchHHHHHHHHHHHh----cCCCCEeeEEEEEecCCcEEE
Confidence 346888899999999999999987 48899999998653 345789999999997 679999999999999999999
Q ss_pred EEEecCCCCHHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccceeecC
Q 001384 883 VYEYMEGGSLEDIISDR--TRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARVVSA 960 (1088)
Q Consensus 883 v~e~~~~gsL~~~l~~~--~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~~~ 960 (1088)
||||+++|+|.++++.. ..+++..++.++.||+.||+|||++ +|+||||||+||+++.++.+||+|||+++....
T Consensus 294 v~E~~~~g~L~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~ 370 (495)
T 1opk_A 294 ITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKK---NFIHRNLAARNCLVGENHLVKVADFGLSRLMTG 370 (495)
T ss_dssp EEECCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECGGGCEEECCTTCEECCTT
T ss_pred EEEccCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCChhhEEECCCCcEEEeecccceeccC
Confidence 99999999999999764 4589999999999999999999999 999999999999999999999999999987654
Q ss_pred CCCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHh-CCcCCCCCchh-HHHHHHhhhccCCCCCCccccch
Q 001384 961 GDSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELAT-GRRALEGGEEC-LVEWGRRVMGYGRHGPGRAVIPV 1038 (1088)
Q Consensus 961 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~ellt-g~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 1038 (1088)
..........++..|+|||++....++.++|||||||++|||++ |+.||.+.... ..+....
T Consensus 371 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlG~~l~el~t~g~~p~~~~~~~~~~~~~~~---------------- 434 (495)
T 1opk_A 371 DTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEK---------------- 434 (495)
T ss_dssp CCEECCTTCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHHHHHT----------------
T ss_pred CceeecCCCcCCcceeCHhHHhcCCCCcHHhHHhHHHHHHHHHhCCCCCCCCCCHHHHHHHHHc----------------
Confidence 33333334456789999999988899999999999999999999 99999875432 1111111
Q ss_pred hhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhhCCC
Q 001384 1039 VLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKILPH 1086 (1088)
Q Consensus 1039 ~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i~~~ 1086 (1088)
+.....+..++..+.+++.+||+.||++||+++||++.|++++..
T Consensus 435 ---~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~el~~~L~~~~~~ 479 (495)
T 1opk_A 435 ---DYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMFQE 479 (495)
T ss_dssp ---TCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSCSS
T ss_pred ---CCCCCCCCCCCHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHHhc
Confidence 001111233456788999999999999999999999999998764
No 87
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A
Probab=100.00 E-value=1.1e-38 Score=375.91 Aligned_cols=251 Identities=32% Similarity=0.412 Sum_probs=207.8
Q ss_pred cCCCCccceecccCceEEEEEEeCCCcEEEEEEccccCccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCC-eEEE
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLPDGREVAVKKLQREGLEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGS-EKIL 882 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~-~~~l 882 (1088)
.++|++.+.||+|+||.||+|.++ ++.||||+++... ..+.+.+|++++++ ++||||+++++++.... ..++
T Consensus 192 ~~~~~~~~~lG~G~fg~V~~~~~~-~~~vavK~~~~~~--~~~~~~~E~~~l~~----l~h~niv~~~~~~~~~~~~~~i 264 (450)
T 1k9a_A 192 MKELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDA--TAQAFLAEASVMTQ----LRHSNLVQLLGVIVEEKGGLYI 264 (450)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEET-TEEEEEEEESSCT--TSHHHHHHHHHHHT----CCCTTBCCEEEEEECTTSCEEE
T ss_pred hHHeEEEeeecCcCCeeEEEEEec-CCeEEEEEeCCch--HHHHHHHHHHHHHh----ccCCCEEEEEEEEEcCCCceEE
Confidence 356888999999999999999985 7899999998753 45689999999997 67999999999987665 7899
Q ss_pred EEEecCCCCHHHHHhhcCC--CCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccceeecC
Q 001384 883 VYEYMEGGSLEDIISDRTR--LTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARVVSA 960 (1088)
Q Consensus 883 v~e~~~~gsL~~~l~~~~~--l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~~~ 960 (1088)
||||+++|+|.++++.... +++..++.++.||+.||+|||++ +|+||||||+||+++.++.+||+|||+++....
T Consensus 265 v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~ 341 (450)
T 1k9a_A 265 VTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGN---NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASS 341 (450)
T ss_dssp EEECCTTCBHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTSCEEECCCTTCEECC-
T ss_pred EEEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCCHhhEEECCCCCEEEeeCCCcccccc
Confidence 9999999999999987543 79999999999999999999999 999999999999999999999999999986432
Q ss_pred CCCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHh-CCcCCCCCchhHHHHHHhhhccCCCCCCccccchh
Q 001384 961 GDSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELAT-GRRALEGGEECLVEWGRRVMGYGRHGPGRAVIPVV 1039 (1088)
Q Consensus 961 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1039 (1088)
. .....++..|+|||.+.+..++.++||||||+++|||++ |+.||.+...... .....
T Consensus 342 ~----~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~~--~~~i~--------------- 400 (450)
T 1k9a_A 342 T----QDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDV--VPRVE--------------- 400 (450)
T ss_dssp ---------CCCTTTSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTTCCSSTTSCTTTH--HHHHH---------------
T ss_pred c----ccCCCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHHH--HHHHH---------------
Confidence 1 122357889999999999999999999999999999998 9999986533111 11111
Q ss_pred hcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhhCCC
Q 001384 1040 LLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKILPH 1086 (1088)
Q Consensus 1040 ~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i~~~ 1086 (1088)
.+.....+..++..+.+++.+||+.||++||++.++++.|+++..+
T Consensus 401 -~~~~~~~p~~~~~~l~~li~~cl~~dp~~Rpt~~~l~~~L~~i~~~ 446 (450)
T 1k9a_A 401 -KGYKMDAPDGCPPAVYDVMKNCWHLDAATRPTFLQLREQLEHIRTH 446 (450)
T ss_dssp -TTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred -cCCCCCCCCcCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHHh
Confidence 1111122334456788999999999999999999999999998643
No 88
>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*
Probab=100.00 E-value=6.8e-39 Score=363.02 Aligned_cols=249 Identities=28% Similarity=0.393 Sum_probs=205.4
Q ss_pred HcCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccC---ccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCC
Q 001384 803 ATGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREG---LEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGS 878 (1088)
Q Consensus 803 ~~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~ 878 (1088)
..++|++.+.||+|+||.||+|+++ +|+.||||++++.. ......+..|.+++... .+||||+++++++.+..
T Consensus 15 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~---~~hp~iv~l~~~~~~~~ 91 (345)
T 1xjd_A 15 KIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLA---WEHPFLTHMFCTFQTKE 91 (345)
T ss_dssp -CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHH---TTCTTBCCEEEEEECSS
T ss_pred ChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhc---CCCCCCCcEEEEEEeCC
Confidence 4578999999999999999999976 68999999997642 22345677888888752 37999999999999999
Q ss_pred eEEEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccceee
Q 001384 879 EKILVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARVV 958 (1088)
Q Consensus 879 ~~~lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~ 958 (1088)
..|+||||+++|+|.++++....+++.+++.++.||+.||+|||++ +|+||||||+||+++.++.+||+|||+++..
T Consensus 92 ~~~lv~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~ 168 (345)
T 1xjd_A 92 NLFFVMEYLNGGDLMYHIQSCHKFDLSRATFYAAEIILGLQFLHSK---GIVYRDLKLDNILLDKDGHIKIADFGMCKEN 168 (345)
T ss_dssp EEEEEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCC
T ss_pred EEEEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCCChhhEEECCCCCEEEeEChhhhhc
Confidence 9999999999999999999888899999999999999999999999 9999999999999999999999999999864
Q ss_pred cCCCCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCCCCCccccch
Q 001384 959 SAGDSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRHGPGRAVIPV 1038 (1088)
Q Consensus 959 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1038 (1088)
.... ......+||+.|+|||++.+..++.++||||+||++|||++|+.||.+...... ...+.....
T Consensus 169 ~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~--~~~i~~~~~---------- 235 (345)
T 1xjd_A 169 MLGD-AKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEEEL--FHSIRMDNP---------- 235 (345)
T ss_dssp CCTT-CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHH--HHHHHHCCC----------
T ss_pred ccCC-CcccCCCCCcccCChhhhcCCCCCChhhhHHHHHHHHHHhcCCCCCCCCCHHHH--HHHHHhCCC----------
Confidence 3222 234456899999999999998999999999999999999999999987654221 111110000
Q ss_pred hhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHH-HHH
Q 001384 1039 VLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVK-EVL 1077 (1088)
Q Consensus 1039 ~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~-eil 1077 (1088)
..+.....++.+++.+|++.||++||++. ||+
T Consensus 236 -------~~p~~~s~~~~~li~~lL~~dp~~R~~~~~~i~ 268 (345)
T 1xjd_A 236 -------FYPRWLEKEAKDLLVKLFVREPEKRLGVRGDIR 268 (345)
T ss_dssp -------CCCTTSCHHHHHHHHHHSCSSGGGSBTTBSCGG
T ss_pred -------CCCcccCHHHHHHHHHHhcCCHhHcCCChHHHH
Confidence 00112335688899999999999999997 554
No 89
>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*
Probab=100.00 E-value=7.9e-39 Score=359.78 Aligned_cols=258 Identities=27% Similarity=0.405 Sum_probs=211.7
Q ss_pred cCCCCccceecccCceEEEEEEe------CCCcEEEEEEccccCc-cchHHHHHHHHHHhCCCCCCCCCceeEEeeEEec
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVL------PDGREVAVKKLQREGL-EGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLD 876 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~------~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~ 876 (1088)
.++|.+.+.||+|+||.||+|.+ .+++.||||++..... ...+.+.+|+++++. ++||||+++++++.+
T Consensus 22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~----l~hp~iv~~~~~~~~ 97 (314)
T 2ivs_A 22 RKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQ----VNHPHVIKLYGACSQ 97 (314)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHTT----CCCTTBCCEEEEECS
T ss_pred hhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHhh----CCCCceeeEEEEEec
Confidence 45789999999999999999986 2457899999986532 234678899999987 679999999999999
Q ss_pred CCeEEEEEEecCCCCHHHHHhhcCC------------------------CCHHHHHHHHHHHHHHHHHHHhcCCCCeEec
Q 001384 877 GSEKILVYEYMEGGSLEDIISDRTR------------------------LTWRRRLDIAIDVARALVFLHHECYPPIVHR 932 (1088)
Q Consensus 877 ~~~~~lv~e~~~~gsL~~~l~~~~~------------------------l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~ 932 (1088)
++..++||||+++|+|.+++..... +++.+++.++.|++.||+|||++ +|+||
T Consensus 98 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~ 174 (314)
T 2ivs_A 98 DGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEM---KLVHR 174 (314)
T ss_dssp SSSCEEEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHHHT---TEECC
T ss_pred CCceEEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHHHC---CCccc
Confidence 9999999999999999999986543 89999999999999999999999 99999
Q ss_pred CCCCCCEEEcCCCCEEEeecccceeecCCCCc-ccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHh-CCcCCC
Q 001384 933 DVKASNVLLDKEGKALVTDFGLARVVSAGDSH-VSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELAT-GRRALE 1010 (1088)
Q Consensus 933 DLkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~ellt-g~~p~~ 1010 (1088)
||||+||+++.++.+||+|||+++........ ......+++.|+|||.+.+..++.++||||+|+++|||++ |+.||.
T Consensus 175 dikp~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~ 254 (314)
T 2ivs_A 175 DLAARNILVAEGRKMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYP 254 (314)
T ss_dssp CCSGGGEEEETTTEEEECCCTTCEECTTTSCEECSSCCCSCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSST
T ss_pred ccchheEEEcCCCCEEEccccccccccccccceeccCCCCcccccChhhhcCCCcCchhhHHHHHHHHHHHHhCCCCCCC
Confidence 99999999999999999999999876543322 2234457789999999988889999999999999999999 999998
Q ss_pred CCchhHHHHHHhhhccCCCCCCccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhhCCC
Q 001384 1011 GGEECLVEWGRRVMGYGRHGPGRAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKILPH 1086 (1088)
Q Consensus 1011 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i~~~ 1086 (1088)
+....... ....... ....+...+..+.+++.+|++.||++||+++|+++.|++++..
T Consensus 255 ~~~~~~~~--~~~~~~~----------------~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~ 312 (314)
T 2ivs_A 255 GIPPERLF--NLLKTGH----------------RMERPDNCSEEMYRLMLQCWKQEPDKRPVFADISKDLEKMMVK 312 (314)
T ss_dssp TCCGGGHH--HHHHTTC----------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHH--HHhhcCC----------------cCCCCccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhh
Confidence 75432111 1111000 0111223346788999999999999999999999999998653
No 90
>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*
Probab=100.00 E-value=3e-39 Score=370.57 Aligned_cols=267 Identities=25% Similarity=0.363 Sum_probs=213.6
Q ss_pred CHHHHHHHcCCCCccceecccCceEEEEEEe------CCCcEEEEEEccccCcc-chHHHHHHHHHHhCCCCCCCCCcee
Q 001384 796 TYSDILKATGKFSEDRIIGKGGFGTVYRGVL------PDGREVAVKKLQREGLE-GEREFRAEMEVLSGNGFGWPHPNLV 868 (1088)
Q Consensus 796 ~~~~~~~~~~~~~~~~~LG~G~~g~Vy~~~~------~~~~~vavK~~~~~~~~-~~~~~~~E~~~l~~~~~~l~h~niv 868 (1088)
...+.....++|++.+.||+|+||.||+|++ .+++.||||++...... ..+.+.+|++++.++. +||||+
T Consensus 13 ~~~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~---~hpniv 89 (359)
T 3vhe_A 13 DASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIG---HHLNVV 89 (359)
T ss_dssp CHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHC---CCTTBC
T ss_pred CcccccccccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHHHHHHhhc---CCccee
Confidence 3444445567899999999999999999983 24678999999865333 3357899999998742 799999
Q ss_pred EEeeEEecCC-eEEEEEEecCCCCHHHHHhhcCC----------------------------------------------
Q 001384 869 TLYGWCLDGS-EKILVYEYMEGGSLEDIISDRTR---------------------------------------------- 901 (1088)
Q Consensus 869 ~l~~~~~~~~-~~~lv~e~~~~gsL~~~l~~~~~---------------------------------------------- 901 (1088)
++++++.+.+ ..++||||+++|+|.++++....
T Consensus 90 ~~~~~~~~~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (359)
T 3vhe_A 90 NLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFVE 169 (359)
T ss_dssp CEEEEECSTTSCCEEEEECCTTEEHHHHHHTTTTSBCSCC----------------------------------------
T ss_pred eeeeeeecCCCceEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCcccccccccccc
Confidence 9999988755 48999999999999999976543
Q ss_pred --------------------CCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccceeecCC
Q 001384 902 --------------------LTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARVVSAG 961 (1088)
Q Consensus 902 --------------------l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~~~~ 961 (1088)
+++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++.....
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~---~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~ 246 (359)
T 3vhe_A 170 EKSLSDVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIHRDLAARNILLSEKNVVKICDFGLARDIYKD 246 (359)
T ss_dssp --------------CTTTTCBCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCCGGGSCTTSC
T ss_pred ccccchhhhcccccchhccccCHHHHHHHHHHHHHHHHHHHHC---CcccCCCChhhEEEcCCCcEEEEeccceeeeccc
Confidence 89999999999999999999999 9999999999999999999999999999876433
Q ss_pred CC-cccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHh-CCcCCCCCchhHHHHHHhhhccCCCCCCccccchh
Q 001384 962 DS-HVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELAT-GRRALEGGEECLVEWGRRVMGYGRHGPGRAVIPVV 1039 (1088)
Q Consensus 962 ~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1039 (1088)
.. .......+|+.|+|||++.+..++.++||||||+++|||++ |+.||.+............. ..
T Consensus 247 ~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~--~~----------- 313 (359)
T 3vhe_A 247 PDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKE--GT----------- 313 (359)
T ss_dssp TTCEEC--CEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHHHHHHHHH--TC-----------
T ss_pred ccchhccccCCCceeEChhhhcCCCCCchhhhhhHHHHHHHHHhcCCCCCCccchhHHHHHHHHc--CC-----------
Confidence 22 23345678899999999988899999999999999999998 99999875432211111111 00
Q ss_pred hcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhhCC
Q 001384 1040 LLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKILP 1085 (1088)
Q Consensus 1040 ~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i~~ 1085 (1088)
....+.....++.+++.+|++.||++||+++|+++.|+++++
T Consensus 314 ----~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~ 355 (359)
T 3vhe_A 314 ----RMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQ 355 (359)
T ss_dssp ----CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred ----CCCCCCCCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHHHH
Confidence 001112233568889999999999999999999999999864
No 91
>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7
Probab=100.00 E-value=4.3e-38 Score=362.02 Aligned_cols=251 Identities=22% Similarity=0.307 Sum_probs=207.4
Q ss_pred cCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeEEE
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGLEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEKIL 882 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~~l 882 (1088)
.++|++.+.||+|+||.||+|.++ +|+.||+|++..........+.+|++++.. ++||||+++++++.++...++
T Consensus 50 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~E~~il~~----l~hpnIv~~~~~~~~~~~~~l 125 (387)
T 1kob_A 50 YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQ----LHHPKLINLHDAFEDKYEMVL 125 (387)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTT----CCSTTBCCEEEEEECSSEEEE
T ss_pred ccceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccchhhHHHHHHHHHHHHh----CCCcCCCeEEEEEEeCCEEEE
Confidence 357999999999999999999976 688999999987655556678999999986 679999999999999999999
Q ss_pred EEEecCCCCHHHHHhhcC-CCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcC--CCCEEEeecccceeec
Q 001384 883 VYEYMEGGSLEDIISDRT-RLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDK--EGKALVTDFGLARVVS 959 (1088)
Q Consensus 883 v~e~~~~gsL~~~l~~~~-~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~--~~~~kl~Dfg~a~~~~ 959 (1088)
||||+++|+|.+++.... .+++.+++.++.||+.||+|||++ +|+||||||+||+++. ++.+||+|||+++...
T Consensus 126 v~E~~~gg~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDlkp~NIll~~~~~~~vkL~DFG~a~~~~ 202 (387)
T 1kob_A 126 ILEFLSGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMHEH---SIVHLDIKPENIMCETKKASSVKIIDFGLATKLN 202 (387)
T ss_dssp EEECCCCCBHHHHTTCTTCCBCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSTTCCCEEECCCTTCEECC
T ss_pred EEEcCCCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhC---CeeecccchHHeEEecCCCCceEEEecccceecC
Confidence 999999999999997654 699999999999999999999999 9999999999999974 4789999999998765
Q ss_pred CCCCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCCCCCccccchh
Q 001384 960 AGDSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRHGPGRAVIPVV 1039 (1088)
Q Consensus 960 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1039 (1088)
... ......||+.|+|||++.+..++.++||||+||++|||++|+.||.+..... ............ +.
T Consensus 203 ~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~~--~~~~i~~~~~~~------~~- 271 (387)
T 1kob_A 203 PDE--IVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLE--TLQNVKRCDWEF------DE- 271 (387)
T ss_dssp TTS--CEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHH--HHHHHHHCCCCC------CS-
T ss_pred CCc--ceeeeccCCCccCchhccCCCCCCcccEeeHhHHHHHHHhCCCCCCCCCHHH--HHHHHHhCCCCC------Cc-
Confidence 432 2334578999999999999899999999999999999999999998765421 111111100000 00
Q ss_pred hcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1040 LLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1040 ~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
........++.+++.+|++.||++||+++|+++
T Consensus 272 ------~~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~ 304 (387)
T 1kob_A 272 ------DAFSSVSPEAKDFIKNLLQKEPRKRLTVHDALE 304 (387)
T ss_dssp ------STTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred ------cccccCCHHHHHHHHHHcCCChhHCcCHHHHhh
Confidence 001123457888999999999999999999986
No 92
>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}
Probab=100.00 E-value=6.8e-39 Score=370.21 Aligned_cols=257 Identities=28% Similarity=0.406 Sum_probs=210.9
Q ss_pred cCCCCccceecccCceEEEEEEeC--------CCcEEEEEEccccCcc-chHHHHHHHHHHhCCCCCCCCCceeEEeeEE
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLP--------DGREVAVKKLQREGLE-GEREFRAEMEVLSGNGFGWPHPNLVTLYGWC 874 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~--------~~~~vavK~~~~~~~~-~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~ 874 (1088)
.++|++.+.||+|+||+||+|++. .+..||||++...... ....+.+|++++.++. +||||+++++++
T Consensus 68 ~~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~---~hpnIv~~~~~~ 144 (382)
T 3tt0_A 68 RDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIG---KHKNIINLLGAC 144 (382)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHC---CCTTBCCEEEEE
T ss_pred hhheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHHHhc---CCchhhhheeee
Confidence 457899999999999999999852 2357999999865332 2357889999998732 799999999999
Q ss_pred ecCCeEEEEEEecCCCCHHHHHhhcC----------------CCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCC
Q 001384 875 LDGSEKILVYEYMEGGSLEDIISDRT----------------RLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASN 938 (1088)
Q Consensus 875 ~~~~~~~lv~e~~~~gsL~~~l~~~~----------------~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~N 938 (1088)
..++..++||||+++|+|.++++... .+++.+++.++.|++.||+|||++ +|+||||||+|
T Consensus 145 ~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~N 221 (382)
T 3tt0_A 145 TQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASK---KCIHRDLAARN 221 (382)
T ss_dssp CSSSSCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGG
T ss_pred ccCCceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCcce
Confidence 99999999999999999999997653 489999999999999999999999 99999999999
Q ss_pred EEEcCCCCEEEeecccceeecCCCC-cccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHh-CCcCCCCCchhH
Q 001384 939 VLLDKEGKALVTDFGLARVVSAGDS-HVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELAT-GRRALEGGEECL 1016 (1088)
Q Consensus 939 Ill~~~~~~kl~Dfg~a~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~ellt-g~~p~~~~~~~~ 1016 (1088)
|+++.++.+||+|||+++....... .......+|+.|+|||++.+..++.++|||||||++|||++ |+.||.+....
T Consensus 222 Ill~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~ellt~g~~p~~~~~~~- 300 (382)
T 3tt0_A 222 VLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVE- 300 (382)
T ss_dssp EEECTTCCEEECSCSCCCCSSCCCTTCCCTTCCCGGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHH-
T ss_pred EEEcCCCcEEEcccCcccccccccccccccCCCCCcceeCHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCCHH-
Confidence 9999999999999999987654332 22334567889999999999999999999999999999999 99999875432
Q ss_pred HHHHHhhhccCCCCCCccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhhC
Q 001384 1017 VEWGRRVMGYGRHGPGRAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKIL 1084 (1088)
Q Consensus 1017 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i~ 1084 (1088)
+.......... ...+.....++.+++.+|++.||++||+++||++.|++++
T Consensus 301 -~~~~~~~~~~~----------------~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~ 351 (382)
T 3tt0_A 301 -ELFKLLKEGHR----------------MDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIV 351 (382)
T ss_dssp -HHHHHHHTTCC----------------CCCCSSCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred -HHHHHHHcCCC----------------CCCCccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence 11111111000 0112223457889999999999999999999999999985
No 93
>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}
Probab=100.00 E-value=5.3e-38 Score=351.88 Aligned_cols=262 Identities=22% Similarity=0.299 Sum_probs=203.9
Q ss_pred cCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCccc---hHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCe
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGLEG---EREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSE 879 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~---~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~ 879 (1088)
.++|++.+.||+|+||.||+|++. +++.||+|++....... .+.+.+|+.++.+ ++||||+++++++..++.
T Consensus 33 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~----l~hp~iv~~~~~~~~~~~ 108 (309)
T 2h34_A 33 FGPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGR----LQEPHVVPIHDFGEIDGQ 108 (309)
T ss_dssp -CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTT----CCCTTBCCEEEEEEETTE
T ss_pred eccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhh----cCCCCeeEEEEEEeeCCe
Confidence 478999999999999999999976 68899999997653322 3678899999986 679999999999999999
Q ss_pred EEEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccceeec
Q 001384 880 KILVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARVVS 959 (1088)
Q Consensus 880 ~~lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~~ 959 (1088)
.++||||+++++|.++++...++++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||++....
T Consensus 109 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dlkp~NIl~~~~~~~kl~Dfg~~~~~~ 185 (309)
T 2h34_A 109 LYVDMRLINGVDLAAMLRRQGPLAPPRAVAIVRQIGSALDAAHAA---GATHRDVKPENILVSADDFAYLVDFGIASATT 185 (309)
T ss_dssp EEEEEECCCCEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECSCCC-----
T ss_pred EEEEEEecCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---cCCcCCCChHHEEEcCCCCEEEecCccCcccc
Confidence 999999999999999999888899999999999999999999999 99999999999999999999999999998765
Q ss_pred CCCCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCCCCCccccchh
Q 001384 960 AGDSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRHGPGRAVIPVV 1039 (1088)
Q Consensus 960 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1039 (1088)
...........+++.|+|||.+.+..++.++||||||+++|||++|+.||.+....... .... .. .....
T Consensus 186 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~--~~~~-~~--~~~~~----- 255 (309)
T 2h34_A 186 DEKLTQLGNTVGTLYYMAPERFSESHATYRADIYALTCVLYECLTGSPPYQGDQLSVMG--AHIN-QA--IPRPS----- 255 (309)
T ss_dssp -----------CCGGGCCGGGTCC----CCCHHHHHHHHHHHHHHSSCSSCSCHHHHHH--HHHH-SC--CCCGG-----
T ss_pred ccccccccccCCCcCccCHHHHcCCCCCchHhHHHHHHHHHHHHHCCCCCCCchHHHHH--HHhc-cC--CCCcc-----
Confidence 43333344567899999999999989999999999999999999999999876442111 1111 00 00000
Q ss_pred hcCCCccccHHHHHHHHHHHhhhcccCCCCCC-CHHHHHHHHHhhCCCCC
Q 001384 1040 LLGSGLAEGAEEMSELLRIGVRCTAEAPNARP-NVKEVLAMLIKILPHCD 1088 (1088)
Q Consensus 1040 ~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RP-s~~eil~~L~~i~~~~~ 1088 (1088)
..+...+.++.+++.+|++.||++|| +++++++.|++++..++
T Consensus 256 ------~~~~~~~~~l~~li~~~l~~dP~~Rp~s~~~l~~~l~~~l~~~~ 299 (309)
T 2h34_A 256 ------TVRPGIPVAFDAVIARGMAKNPEDRYVTCGDLSAAAHAALATAD 299 (309)
T ss_dssp ------GTSTTCCTHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHTCC---
T ss_pred ------ccCCCCCHHHHHHHHHhccCCHHHHHHhHHHHHHHHHHHHHhhc
Confidence 01122335688899999999999999 99999999999987653
No 94
>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*
Probab=100.00 E-value=8.8e-39 Score=357.24 Aligned_cols=271 Identities=23% Similarity=0.358 Sum_probs=209.5
Q ss_pred CCCCccceecccCceEEEEEEe-----CCCcEEEEEEccccC-ccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecC-
Q 001384 805 GKFSEDRIIGKGGFGTVYRGVL-----PDGREVAVKKLQREG-LEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDG- 877 (1088)
Q Consensus 805 ~~~~~~~~LG~G~~g~Vy~~~~-----~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~- 877 (1088)
.+|++.+.||+|+||.||+|++ .+++.||||++.... ....+.+.+|++++.. ++||||+++++++...
T Consensus 21 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~----l~h~~i~~~~~~~~~~~ 96 (302)
T 4e5w_A 21 RFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRN----LYHENIVKYKGICTEDG 96 (302)
T ss_dssp GGEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHHHT----CCCTTBCCEEEEEEC--
T ss_pred hhhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHHHh----CCCCCeeeeeeEEecCC
Confidence 3588899999999999999983 368899999998543 2334678999999997 6799999999999876
Q ss_pred -CeEEEEEEecCCCCHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccc
Q 001384 878 -SEKILVYEYMEGGSLEDIISD-RTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLA 955 (1088)
Q Consensus 878 -~~~~lv~e~~~~gsL~~~l~~-~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a 955 (1088)
...++||||+++|+|.++++. ...+++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||++
T Consensus 97 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~ 173 (302)
T 4e5w_A 97 GNGIKLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQICKGMDYLGSR---QYVHRDLAARNVLVESEHQVKIGDFGLT 173 (302)
T ss_dssp -CCEEEEEECCTTCBHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEEECCCTTC
T ss_pred CceEEEEEEeCCCCcHHHHHHhccccCCHHHHHHHHHHHHHHHHHhhcC---CcccCCCchheEEEcCCCCEEECccccc
Confidence 668999999999999999954 45799999999999999999999999 9999999999999999999999999999
Q ss_pred eeecCCCC--cccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCCCCCc
Q 001384 956 RVVSAGDS--HVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRHGPGR 1033 (1088)
Q Consensus 956 ~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 1033 (1088)
........ .......+|..|+|||.+.+..++.++||||+|+++|+|++|+.|+........ .............
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~---~~~~~~~~~~~~~ 250 (302)
T 4e5w_A 174 KAIETDKEYYTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSPMALFL---KMIGPTHGQMTVT 250 (302)
T ss_dssp EECCTTCCEEECCCCTTCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHH---HHHCSCCGGGHHH
T ss_pred ccccCCCcceeccCCCCCCccccCCeeecCCCCCcchhHHHHHHHHHHHHHccCCCcchhhHHh---hccCCcccccCHH
Confidence 88754432 123345678889999999888999999999999999999999998754311111 1000000000000
Q ss_pred cccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhhCC
Q 001384 1034 AVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKILP 1085 (1088)
Q Consensus 1034 ~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i~~ 1085 (1088)
........+.....+...+..+.+++.+|++.||.+||+++|+++.|+++++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~ll~ 302 (302)
T 4e5w_A 251 RLVNTLKEGKRLPCPPNCPDEVYQLMRKCWEFQPSNRTSFQNLIEGFEALLK 302 (302)
T ss_dssp HHHHHHHTTCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHC
T ss_pred HHHHHHhccCCCCCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhC
Confidence 1111111111222233445678899999999999999999999999999874
No 95
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Probab=100.00 E-value=6.4e-39 Score=378.27 Aligned_cols=256 Identities=28% Similarity=0.405 Sum_probs=206.6
Q ss_pred cCCCCccceecccCceEEEEEEeCCCcEEEEEEccccCccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeEEEE
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLPDGREVAVKKLQREGLEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEKILV 883 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~~lv 883 (1088)
.++|++.+.||+|+||.||+|.++.+..||||+++... ...+.+.+|++++++ ++||||+++++++.+ ...++|
T Consensus 183 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~----l~hp~iv~~~~~~~~-~~~~iv 256 (452)
T 1fmk_A 183 RESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKK----LRHEKLVQLYAVVSE-EPIYIV 256 (452)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTS-SCHHHHHHHHHHHHH----CCCTTBCCEEEEECS-SSCEEE
T ss_pred hhHceeeeeecCCCCeEEEEEEECCCceEEEEEeccCC-CCHHHHHHHHHHHHh----CCCCCEeeEEEEEcC-CceEEE
Confidence 35688899999999999999999888889999998654 345689999999997 679999999999876 678999
Q ss_pred EEecCCCCHHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccceeecCC
Q 001384 884 YEYMEGGSLEDIISDR--TRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARVVSAG 961 (1088)
Q Consensus 884 ~e~~~~gsL~~~l~~~--~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~~~~ 961 (1088)
|||+++|+|.++++.. ..+++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++.....
T Consensus 257 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~ 333 (452)
T 1fmk_A 257 TEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIEDN 333 (452)
T ss_dssp ECCCTTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCCCTTC-----
T ss_pred ehhhcCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChhhEEECCCCCEEECCCccceecCCC
Confidence 9999999999999753 4699999999999999999999999 9999999999999999999999999999876543
Q ss_pred CCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHh-CCcCCCCCchhHHHHHHhhhccCCCCCCccccchhh
Q 001384 962 DSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELAT-GRRALEGGEECLVEWGRRVMGYGRHGPGRAVIPVVL 1040 (1088)
Q Consensus 962 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1040 (1088)
.........++..|+|||.+....++.++||||||+++|||++ |+.||.+..... .......
T Consensus 334 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~--~~~~i~~--------------- 396 (452)
T 1fmk_A 334 EYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNRE--VLDQVER--------------- 396 (452)
T ss_dssp ---------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHH--HHHHHHT---------------
T ss_pred ceecccCCcccccccCHhHHhcCCCCccccHHhHHHHHHHHHhCCCCCCCCCCHHH--HHHHHHc---------------
Confidence 3333334557789999999988899999999999999999999 999998754321 1111110
Q ss_pred cCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhhCCC
Q 001384 1041 LGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKILPH 1086 (1088)
Q Consensus 1041 ~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i~~~ 1086 (1088)
+...+.+..++..+.+++.+|++.||++||+++++++.|+++...
T Consensus 397 -~~~~~~~~~~~~~l~~li~~cl~~dP~~Rpt~~~l~~~L~~~~~~ 441 (452)
T 1fmk_A 397 -GYRMPCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTS 441 (452)
T ss_dssp -TCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTTTSC
T ss_pred -CCCCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHhcc
Confidence 011111233456788999999999999999999999999998754
No 96
>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}
Probab=100.00 E-value=2.1e-38 Score=363.17 Aligned_cols=248 Identities=26% Similarity=0.348 Sum_probs=204.8
Q ss_pred CCCCccceecccCceEEEEEEeC-CCcEEEEEEccccC---ccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeE
Q 001384 805 GKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREG---LEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEK 880 (1088)
Q Consensus 805 ~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~ 880 (1088)
++|++.+.||+|+||.||+|++. +++.||+|++.+.. ....+.+.+|++++.. ++||||+++++++.+....
T Consensus 15 ~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~----l~hp~Iv~l~~~~~~~~~~ 90 (384)
T 4fr4_A 15 DHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQG----LEHPFLVNLWYSFQDEEDM 90 (384)
T ss_dssp GGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHT----CCCTTBCCEEEEEECSSEE
T ss_pred HHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHh----CCCCCCCcEEEEEEeCCEE
Confidence 46899999999999999999976 68899999997542 2234678899999987 6799999999999999999
Q ss_pred EEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccceeecC
Q 001384 881 ILVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARVVSA 960 (1088)
Q Consensus 881 ~lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~~~ 960 (1088)
|+||||+++|+|.++++....+++..++.++.||+.||+|||++ +|+||||||+||+++.++.+||+|||+++....
T Consensus 91 ~lv~e~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NIll~~~g~vkL~DFG~a~~~~~ 167 (384)
T 4fr4_A 91 FMVVDLLLGGDLRYHLQQNVHFKEETVKLFICELVMALDYLQNQ---RIIHRDMKPDNILLDEHGHVHITDFNIAAMLPR 167 (384)
T ss_dssp EEEECCCTTEEHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECCT
T ss_pred EEEEecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCcHHHeEECCCCCEEEeccceeeeccC
Confidence 99999999999999999888899999999999999999999999 999999999999999999999999999987653
Q ss_pred CCCcccccccccccccCccccCC---CCCCcchhHHHHHHHHHHHHhCCcCCCCCch-hHHHHHHhhhccCCCCCCcccc
Q 001384 961 GDSHVSTTIAGTVGYVAPEYGQT---WQATTKGDVYSFGVLAMELATGRRALEGGEE-CLVEWGRRVMGYGRHGPGRAVI 1036 (1088)
Q Consensus 961 ~~~~~~~~~~gt~~y~aPE~~~~---~~~~~~~DvwslG~~l~elltg~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 1036 (1088)
. .......||+.|+|||++.. ..++.++||||+||++|||++|+.||..... ...+.........
T Consensus 168 ~--~~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~--------- 236 (384)
T 4fr4_A 168 E--TQITTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGRRPYHIRSSTSSKEIVHTFETTV--------- 236 (384)
T ss_dssp T--CCBCCCCSCGGGCCGGGTCCCSSCCBCTTHHHHHHHHHHHHHHHSSCSSCCCTTSCHHHHHHHHHHCC---------
T ss_pred C--CceeccCCCccccCCeeeccCCCCCCCccceeechHHHHHHHHhCCCCCCCCCCccHHHHHHHHhhcc---------
Confidence 2 23455689999999998863 4589999999999999999999999975433 1122212111000
Q ss_pred chhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCC-HHHHHH
Q 001384 1037 PVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPN-VKEVLA 1078 (1088)
Q Consensus 1037 ~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs-~~eil~ 1078 (1088)
...+......+.+++.+|++.||.+||+ ++++.+
T Consensus 237 --------~~~p~~~s~~~~~li~~lL~~dP~~R~s~~~~l~~ 271 (384)
T 4fr4_A 237 --------VTYPSAWSQEMVSLLKKLLEPNPDQRFSQLSDVQN 271 (384)
T ss_dssp --------CCCCTTSCHHHHHHHHHHSCSSGGGSCCSHHHHHT
T ss_pred --------cCCCCcCCHHHHHHHHHHhcCCHhHhcccHHHHHc
Confidence 0112223467889999999999999998 666653
No 97
>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...
Probab=100.00 E-value=3e-38 Score=359.00 Aligned_cols=244 Identities=24% Similarity=0.289 Sum_probs=206.0
Q ss_pred CCCCccceecccCceEEEEEEeC-CCcEEEEEEccccC---ccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeE
Q 001384 805 GKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREG---LEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEK 880 (1088)
Q Consensus 805 ~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~ 880 (1088)
++|++.+.||+|+||.||+|+++ +|+.||+|++.+.. ....+.+.+|++++.. ++||||+++++++.+....
T Consensus 41 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~----l~hp~iv~~~~~~~~~~~~ 116 (350)
T 1rdq_E 41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQA----VNFPFLVKLEFSFKDNSNL 116 (350)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTT----CCCTTBCCEEEEEECSSEE
T ss_pred HHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHh----CCCCCCCeEEEEEEcCCEE
Confidence 46889999999999999999976 68999999997642 2334678889999986 6899999999999999999
Q ss_pred EEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccceeecC
Q 001384 881 ILVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARVVSA 960 (1088)
Q Consensus 881 ~lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~~~ 960 (1088)
|+||||+++|+|.+++.+..++++.+++.++.||+.||+|||++ +|+||||||+||+++.++.+||+|||+++....
T Consensus 117 ~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~~kL~DFg~a~~~~~ 193 (350)
T 1rdq_E 117 YMVMEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSL---DLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG 193 (350)
T ss_dssp EEEEECCTTCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECSS
T ss_pred EEEEcCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CcccccCccceEEECCCCCEEEcccccceeccC
Confidence 99999999999999999888899999999999999999999999 999999999999999999999999999987643
Q ss_pred CCCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCCCCCccccchhh
Q 001384 961 GDSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRHGPGRAVIPVVL 1040 (1088)
Q Consensus 961 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1040 (1088)
. .....||+.|+|||++.+..++.++||||+||++|||++|+.||.+.... +....+.....
T Consensus 194 ~----~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~--~~~~~i~~~~~------------ 255 (350)
T 1rdq_E 194 R----TWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPI--QIYEKIVSGKV------------ 255 (350)
T ss_dssp C----BCCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHHCCC------------
T ss_pred C----cccccCCccccCHHHhcCCCCCCcCCEecccHhHhHHhhCCCCCCCCCHH--HHHHHHHcCCC------------
Confidence 2 23467999999999999989999999999999999999999999875442 12222211000
Q ss_pred cCCCccccHHHHHHHHHHHhhhcccCCCCCCC-----HHHHHH
Q 001384 1041 LGSGLAEGAEEMSELLRIGVRCTAEAPNARPN-----VKEVLA 1078 (1088)
Q Consensus 1041 ~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs-----~~eil~ 1078 (1088)
..+......+.+++.+|++.||++||+ ++||++
T Consensus 256 -----~~p~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~ei~~ 293 (350)
T 1rdq_E 256 -----RFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKN 293 (350)
T ss_dssp -----CCCTTCCHHHHHHHHHHSCSCTTTCTTSSTTTTHHHHT
T ss_pred -----CCCCCCCHHHHHHHHHHhhcCHHhccCCccCCHHHHHh
Confidence 011223456888999999999999998 787764
No 98
>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*
Probab=100.00 E-value=2.3e-38 Score=359.92 Aligned_cols=248 Identities=27% Similarity=0.336 Sum_probs=205.4
Q ss_pred cCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccC---ccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCe
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREG---LEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSE 879 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~ 879 (1088)
.++|++.+.||+|+||+||+|+.+ +++.||||++.+.. ....+.+..|..++.... +||||+++++++.+.+.
T Consensus 19 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~---~hp~iv~l~~~~~~~~~ 95 (353)
T 2i0e_A 19 LTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPG---KPPFLTQLHSCFQTMDR 95 (353)
T ss_dssp CTTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTT---CCTTBCCEEEEEECSSE
T ss_pred hHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcC---CCCEEeeEEEEEEcCCE
Confidence 467999999999999999999986 47899999998642 233456788999987632 79999999999999999
Q ss_pred EEEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccceeec
Q 001384 880 KILVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARVVS 959 (1088)
Q Consensus 880 ~~lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~~ 959 (1088)
.|+||||++||+|.++++..+.+++.+++.++.||+.||+|||++ +|+||||||+||+++.++.+||+|||+++...
T Consensus 96 ~~lv~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NIll~~~g~vkL~DFG~a~~~~ 172 (353)
T 2i0e_A 96 LYFVMEYVNGGDLMYHIQQVGRFKEPHAVFYAAEIAIGLFFLQSK---GIIYRDLKLDNVMLDSEGHIKIADFGMCKENI 172 (353)
T ss_dssp EEEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCCC
T ss_pred EEEEEeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CEEeccCCHHHEEEcCCCcEEEEeCCcccccc
Confidence 999999999999999999888899999999999999999999999 99999999999999999999999999998643
Q ss_pred CCCCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCCCCCccccchh
Q 001384 960 AGDSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRHGPGRAVIPVV 1039 (1088)
Q Consensus 960 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1039 (1088)
.. .......+||+.|+|||++.+..++.++||||+||++|||++|+.||.+.... +....+.....
T Consensus 173 ~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~--~~~~~i~~~~~----------- 238 (353)
T 2i0e_A 173 WD-GVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDED--ELFQSIMEHNV----------- 238 (353)
T ss_dssp CT-TCCBCCCCSCGGGCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHHCCC-----------
T ss_pred cC-CcccccccCCccccChhhhcCCCcCCcccccchHHHHHHHHcCCCCCCCCCHH--HHHHHHHhCCC-----------
Confidence 22 22344568999999999999999999999999999999999999999875442 22222221100
Q ss_pred hcCCCccccHHHHHHHHHHHhhhcccCCCCCCC-----HHHHH
Q 001384 1040 LLGSGLAEGAEEMSELLRIGVRCTAEAPNARPN-----VKEVL 1077 (1088)
Q Consensus 1040 ~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs-----~~eil 1077 (1088)
..+.....++.+++.+|++.||++||+ ++||+
T Consensus 239 ------~~p~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~~i~ 275 (353)
T 2i0e_A 239 ------AYPKSMSKEAVAICKGLMTKHPGKRLGCGPEGERDIK 275 (353)
T ss_dssp ------CCCTTSCHHHHHHHHHHTCSCTTSCTTCSTTHHHHHH
T ss_pred ------CCCCCCCHHHHHHHHHHhhcCHHHcCCCCCCCHHHHh
Confidence 011223457888999999999999995 46665
No 99
>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...
Probab=100.00 E-value=8e-39 Score=353.20 Aligned_cols=256 Identities=27% Similarity=0.409 Sum_probs=211.2
Q ss_pred cCCCCccceecccCceEEEEEEeCCCcEEEEEEccccCccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeEEEE
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLPDGREVAVKKLQREGLEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEKILV 883 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~~lv 883 (1088)
.++|++.+.||+|+||.||+|.+++++.||||++.... ...+.+.+|++++++ ++||||+++++++.+ +..++|
T Consensus 12 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~----l~h~~i~~~~~~~~~-~~~~~v 85 (279)
T 1qpc_A 12 RETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGS-MSPDAFLAEANLMKQ----LQHQRLVRLYAVVTQ-EPIYII 85 (279)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTS-SCHHHHHHHHHHHHH----CCCTTBCCEEEEECS-SSCEEE
T ss_pred HHhhhheeeecCCCCeEEEEEEEcCCcEEEEEEecCCc-ccHHHHHHHHHHHHh----CCCcCcceEEEEEcC-CCcEEE
Confidence 35788999999999999999998888899999997653 345678999999997 679999999999864 568999
Q ss_pred EEecCCCCHHHHHhhcC--CCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccceeecCC
Q 001384 884 YEYMEGGSLEDIISDRT--RLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARVVSAG 961 (1088)
Q Consensus 884 ~e~~~~gsL~~~l~~~~--~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~~~~ 961 (1088)
|||+++++|.+++.... .+++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||.+......
T Consensus 86 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~ 162 (279)
T 1qpc_A 86 TEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEER---NYIHRDLRAANILVSDTLSCKIADFGLARLIEDN 162 (279)
T ss_dssp EECCTTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCCTTCEECSSS
T ss_pred EecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHhhEEEcCCCCEEECCCcccccccCc
Confidence 99999999999997643 699999999999999999999999 9999999999999999999999999999887544
Q ss_pred CCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHh-CCcCCCCCchhHHHHHHhhhccCCCCCCccccchhh
Q 001384 962 DSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELAT-GRRALEGGEECLVEWGRRVMGYGRHGPGRAVIPVVL 1040 (1088)
Q Consensus 962 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1040 (1088)
.........++..|+|||.+.+..++.++||||+|+++|||++ |+.||.+..... .........
T Consensus 163 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~--~~~~~~~~~------------- 227 (279)
T 1qpc_A 163 EYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPE--VIQNLERGY------------- 227 (279)
T ss_dssp CEECCTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCCHHH--HHHHHHTTC-------------
T ss_pred ccccccCCCCccCccChhhhccCCCCchhhhHHHHHHHHHHHhCCCCCCcccCHHH--HHHHHhccc-------------
Confidence 3333344557789999999988889999999999999999999 999998754321 111111000
Q ss_pred cCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhhCCC
Q 001384 1041 LGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKILPH 1086 (1088)
Q Consensus 1041 ~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i~~~ 1086 (1088)
....+...+..+.+++.+|++.||++||+++++++.|++++..
T Consensus 228 ---~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~ 270 (279)
T 1qpc_A 228 ---RMVRPDNCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDFFTA 270 (279)
T ss_dssp ---CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred ---CCCCcccccHHHHHHHHHHhccChhhCCCHHHHHHHHHHHHHh
Confidence 0011222345788999999999999999999999999988643
No 100
>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*
Probab=100.00 E-value=1e-38 Score=372.02 Aligned_cols=261 Identities=22% Similarity=0.264 Sum_probs=209.2
Q ss_pred HHHHHHHcCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCcc---chHHHHHHHHHHhCCCCCCCCCceeEEee
Q 001384 797 YSDILKATGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGLE---GEREFRAEMEVLSGNGFGWPHPNLVTLYG 872 (1088)
Q Consensus 797 ~~~~~~~~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~---~~~~~~~E~~~l~~~~~~l~h~niv~l~~ 872 (1088)
+.++....++|++.++||+|+||+||+|+++ +++.||+|++.+.... ....+.+|..++.. ++||||+++++
T Consensus 66 ~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~----~~hp~Iv~l~~ 141 (437)
T 4aw2_A 66 VKQMRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVN----GDSKWITTLHY 141 (437)
T ss_dssp HHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHH----SCTTTBCCEEE
T ss_pred hhcccCChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHh----CCCCCEEEEEE
Confidence 3444445678999999999999999999986 5789999999763211 22347889999886 67999999999
Q ss_pred EEecCCeEEEEEEecCCCCHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEee
Q 001384 873 WCLDGSEKILVYEYMEGGSLEDIISD-RTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTD 951 (1088)
Q Consensus 873 ~~~~~~~~~lv~e~~~~gsL~~~l~~-~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~D 951 (1088)
++.+++..|+||||+++|+|.+++++ ...+++..++.++.|++.||+|||++ +||||||||+|||++.++.+||+|
T Consensus 142 ~~~~~~~~~lV~Ey~~gg~L~~~l~~~~~~l~e~~~~~~~~qi~~aL~~LH~~---giiHrDLKp~NILl~~~g~vkL~D 218 (437)
T 4aw2_A 142 AFQDDNNLYLVMDYYVGGDLLTLLSKFEDRLPEEMARFYLAEMVIAIDSVHQL---HYVHRDIKPDNILMDMNGHIRLAD 218 (437)
T ss_dssp EEECSSEEEEEECCCTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECC
T ss_pred EEeeCCEEEEEEecCCCCcHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHhC---CeEecccCHHHeeEcCCCCEEEcc
Confidence 99999999999999999999999987 56799999999999999999999999 999999999999999999999999
Q ss_pred cccceeecCCCCcccccccccccccCccccC-----CCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhcc
Q 001384 952 FGLARVVSAGDSHVSTTIAGTVGYVAPEYGQ-----TWQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGY 1026 (1088)
Q Consensus 952 fg~a~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~ 1026 (1088)
||+++.............+||+.|+|||++. ...++.++||||+||++|||++|+.||.+...... ...+...
T Consensus 219 FGla~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~~DvwSlGvil~elltG~~Pf~~~~~~~~--~~~i~~~ 296 (437)
T 4aw2_A 219 FGSCLKLMEDGTVQSSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEMLYGETPFYAESLVET--YGKIMNH 296 (437)
T ss_dssp CTTCEECCTTSCEECCSCCSCGGGCCHHHHHHHHTSCCEECTHHHHHHHHHHHHHHHHSSCTTCCSSHHHH--HHHHHTH
T ss_pred hhhhhhcccCCCcccccccCCcCeeChHHHhhcccCCCCCCCcCeeHHHHHHHHHHHhCCCCCCCCChhHH--HHhhhhc
Confidence 9999877654444445578999999999876 56789999999999999999999999987644211 1111100
Q ss_pred CCCCCCccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCC--CCCHHHHHH
Q 001384 1027 GRHGPGRAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNA--RPNVKEVLA 1078 (1088)
Q Consensus 1027 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~--RPs~~eil~ 1078 (1088)
.... ..+. .......++.+++.+|+..+|++ ||+++|+++
T Consensus 297 ~~~~----~~p~--------~~~~~s~~~~dLi~~lL~~~~~r~~r~~~~eil~ 338 (437)
T 4aw2_A 297 KERF----QFPT--------QVTDVSENAKDLIRRLICSREHRLGQNGIEDFKK 338 (437)
T ss_dssp HHHC----CCCS--------SCCCSCHHHHHHHHTTSSCGGGCTTTTTTHHHHT
T ss_pred cccc----cCCc--------ccccCCHHHHHHHHHHhcccccccCCCCHHHHhC
Confidence 0000 0000 01112356788899999888888 999999875
No 101
>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*
Probab=100.00 E-value=9.6e-38 Score=346.07 Aligned_cols=252 Identities=28% Similarity=0.472 Sum_probs=204.7
Q ss_pred cCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCccch-------HHHHHHHHHHhCCCCCCCCCceeEEeeEEe
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGLEGE-------REFRAEMEVLSGNGFGWPHPNLVTLYGWCL 875 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~-------~~~~~E~~~l~~~~~~l~h~niv~l~~~~~ 875 (1088)
.++|++.+.||+|+||+||+|++. +++.||||++........ +.+.+|++++++ ++||||+++++++.
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~----l~h~~i~~~~~~~~ 93 (287)
T 4f0f_A 18 DNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSN----LNHPNIVKLYGLMH 93 (287)
T ss_dssp STTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTT----CCCTTBCCEEEEET
T ss_pred hccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHh----CCCCCchhhheeec
Confidence 367999999999999999999975 789999999976433221 678899999987 67999999999987
Q ss_pred cCCeEEEEEEecCCCCHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHHHhcCCCC--eEecCCCCCCEEEcCCCC-----E
Q 001384 876 DGSEKILVYEYMEGGSLEDIISDR-TRLTWRRRLDIAIDVARALVFLHHECYPP--IVHRDVKASNVLLDKEGK-----A 947 (1088)
Q Consensus 876 ~~~~~~lv~e~~~~gsL~~~l~~~-~~l~~~~~~~i~~qi~~~L~yLH~~~~~~--ivH~DLkp~NIll~~~~~-----~ 947 (1088)
+.. ++||||+++|+|.+++... ..+++..++.++.|++.||+|||++ + |+||||||+||+++.++. +
T Consensus 94 ~~~--~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lH~~---~~~ivH~dikp~Nil~~~~~~~~~~~~ 168 (287)
T 4f0f_A 94 NPP--RMVMEFVPCGDLYHRLLDKAHPIKWSVKLRLMLDIALGIEYMQNQ---NPPIVHRDLRSPNIFLQSLDENAPVCA 168 (287)
T ss_dssp TTT--EEEEECCTTCBHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHTS---SSCCBCSCCSGGGEEESCCCTTCSCCE
T ss_pred CCC--eEEEEecCCCCHHHHHhcccCCccHHHHHHHHHHHHHHHHHHHhC---CCCeecCCCCcceEEEeccCCCCceeE
Confidence 655 6999999999999888654 4699999999999999999999999 8 999999999999988876 9
Q ss_pred EEeecccceeecCCCCcccccccccccccCcccc--CCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhc
Q 001384 948 LVTDFGLARVVSAGDSHVSTTIAGTVGYVAPEYG--QTWQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMG 1025 (1088)
Q Consensus 948 kl~Dfg~a~~~~~~~~~~~~~~~gt~~y~aPE~~--~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~ 1025 (1088)
||+|||+++.... ......||+.|+|||.+ ....++.++||||+|+++|||++|+.||.........+......
T Consensus 169 kl~Dfg~~~~~~~----~~~~~~g~~~y~aPE~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~ 244 (287)
T 4f0f_A 169 KVADFGLSQQSVH----SVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFDEYSYGKIKFINMIRE 244 (287)
T ss_dssp EECCCTTCBCCSS----CEECCCCCCTTSCGGGSSCSSCEECHHHHHHHHHHHHHHHHHSSCTTTTCCCCHHHHHHHHHH
T ss_pred EeCCCCccccccc----cccccCCCccccCchhhccCCCCcCchhhHHHHHHHHHHHHcCCCCCccccccHHHHHHHHhc
Confidence 9999999975432 23446789999999988 45567899999999999999999999998765433332222221
Q ss_pred cCCCCCCccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhh
Q 001384 1026 YGRHGPGRAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKI 1083 (1088)
Q Consensus 1026 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i 1083 (1088)
..... ..+...+.++.+++.+|++.||++||+++|+++.|+++
T Consensus 245 ~~~~~---------------~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~l 287 (287)
T 4f0f_A 245 EGLRP---------------TIPEDCPPRLRNVIELCWSGDPKKRPHFSYIVKELSEL 287 (287)
T ss_dssp SCCCC---------------CCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTC
T ss_pred cCCCC---------------CCCcccCHHHHHHHHHHhcCChhhCcCHHHHHHHHHhC
Confidence 11100 11223346788999999999999999999999999875
No 102
>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}
Probab=100.00 E-value=1.2e-38 Score=362.97 Aligned_cols=251 Identities=25% Similarity=0.349 Sum_probs=192.5
Q ss_pred HcCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeEE
Q 001384 803 ATGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGLEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEKI 881 (1088)
Q Consensus 803 ~~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~~ 881 (1088)
..++|++.+.||+|+||.||+|+++ +++.||||++.... ..+.+.+|++++.+ ++||||+++++++.++...+
T Consensus 51 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~E~~~l~~----l~h~niv~~~~~~~~~~~~~ 124 (349)
T 2w4o_A 51 LSDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTV--DKKIVRTEIGVLLR----LSHPNIIKLKEIFETPTEIS 124 (349)
T ss_dssp GGGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC------------CHHHHH----CCCTTBCCEEEEEECSSEEE
T ss_pred ccCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccch--hHHHHHHHHHHHHh----CCCCCCcceeeeEecCCeEE
Confidence 4568999999999999999999986 57899999998652 34568889999987 67999999999999999999
Q ss_pred EEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcC---CCCEEEeecccceee
Q 001384 882 LVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDK---EGKALVTDFGLARVV 958 (1088)
Q Consensus 882 lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~---~~~~kl~Dfg~a~~~ 958 (1088)
+||||+++|+|.+++.....+++.+++.++.|++.||+|||+. +|+||||||+||+++. ++.+||+|||+++..
T Consensus 125 lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dikp~NIll~~~~~~~~~kl~Dfg~a~~~ 201 (349)
T 2w4o_A 125 LVLELVTGGELFDRIVEKGYYSERDAADAVKQILEAVAYLHEN---GIVHRDLKPENLLYATPAPDAPLKIADFGLSKIV 201 (349)
T ss_dssp EEECCCCSCBHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEESSSSTTCCEEECCCC-----
T ss_pred EEEEeCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCcccEEEecCCCCCCEEEccCcccccc
Confidence 9999999999999999888899999999999999999999999 9999999999999975 889999999999875
Q ss_pred cCCCCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCCCCCccccch
Q 001384 959 SAGDSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRHGPGRAVIPV 1038 (1088)
Q Consensus 959 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1038 (1088)
... .......||+.|+|||++.+..++.++|||||||++|||++|+.||.........+.. ...... ....
T Consensus 202 ~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~-i~~~~~-----~~~~- 272 (349)
T 2w4o_A 202 EHQ--VLMKTVCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDERGDQFMFRR-ILNCEY-----YFIS- 272 (349)
T ss_dssp -------------CGGGSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCTTCHHHHHHH-HHTTCC-----CCCT-
T ss_pred Ccc--cccccccCCCCccCHHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCcccHHHHHH-HHhCCC-----ccCC-
Confidence 432 2234467899999999999989999999999999999999999999765442222211 111000 0000
Q ss_pred hhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1039 VLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1039 ~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
+.......++.+++.+|++.||++||++.|+++
T Consensus 273 -------~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 305 (349)
T 2w4o_A 273 -------PWWDEVSLNAKDLVRKLIVLDPKKRLTTFQALQ 305 (349)
T ss_dssp -------TTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred -------chhhhCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 001223457888999999999999999999986
No 103
>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A
Probab=100.00 E-value=6.5e-38 Score=348.36 Aligned_cols=265 Identities=22% Similarity=0.263 Sum_probs=201.5
Q ss_pred CCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCcc--chHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeEE
Q 001384 805 GKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGLE--GEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEKI 881 (1088)
Q Consensus 805 ~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~--~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~~ 881 (1088)
++|++.+.||+|+||+||+|+++ +++.||||++...... ....+.+|++++++ ++||||+++++++.++...+
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~----l~h~~iv~~~~~~~~~~~~~ 77 (292)
T 3o0g_A 2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKE----LKHKNIVRLHDVLHSDKKLT 77 (292)
T ss_dssp CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTT----CCCTTBCCEEEEEEETTEEE
T ss_pred CCceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHhc----CCCCCEeeEEeEEEeCCEEE
Confidence 57899999999999999999976 6899999999765332 23678899999987 67999999999999999999
Q ss_pred EEEEecCCCCHHHHH-hhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccceeecC
Q 001384 882 LVYEYMEGGSLEDII-SDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARVVSA 960 (1088)
Q Consensus 882 lv~e~~~~gsL~~~l-~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~~~ 960 (1088)
+||||+++ ++.+.+ .....+++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++....
T Consensus 78 lv~e~~~~-~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~~---~ivH~dikp~Nil~~~~~~~kl~Dfg~~~~~~~ 153 (292)
T 3o0g_A 78 LVFEFCDQ-DLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHSR---NVLHRDLKPQNLLINRNGELKLANFGLARAFGI 153 (292)
T ss_dssp EEEECCSE-EHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECCS
T ss_pred EEEecCCC-CHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEeecccceecCC
Confidence 99999987 555554 4467899999999999999999999999 999999999999999999999999999987643
Q ss_pred CCCcccccccccccccCccccCCCC-CCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHH--hhhccCCCCCCc--cc
Q 001384 961 GDSHVSTTIAGTVGYVAPEYGQTWQ-ATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGR--RVMGYGRHGPGR--AV 1035 (1088)
Q Consensus 961 ~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~--~~~~~~~~~~~~--~~ 1035 (1088)
.. .......+|+.|+|||++.+.. ++.++||||+||++|||++|+.||............ ............ ..
T Consensus 154 ~~-~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 232 (292)
T 3o0g_A 154 PV-RCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTK 232 (292)
T ss_dssp CC-SCCCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSSHHHHHHHHHHHHCCCCTTTCTTGGG
T ss_pred cc-ccccCCccccCCcChHHHcCCCCcCchHHHHHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHHhCCCChhhhhhhcc
Confidence 22 2234457899999999887655 899999999999999999999986554332211111 111100000000 00
Q ss_pred cchh-------hcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1036 IPVV-------LLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1036 ~~~~-------~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
.+.. ..............++.+++.+|++.||++|||++|+++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 282 (292)
T 3o0g_A 233 LPDYKPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQ 282 (292)
T ss_dssp STTCCCCCCCCTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred cccccccccccCCcchhhcccccChHHHHHHHHHhccChhhCCCHHHHhc
Confidence 0000 000000112234467788999999999999999999985
No 104
>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}
Probab=100.00 E-value=3.2e-39 Score=370.45 Aligned_cols=257 Identities=28% Similarity=0.385 Sum_probs=208.4
Q ss_pred cCCCCccceecccCceEEEEEEeC------CCcEEEEEEccccC-ccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEec
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLP------DGREVAVKKLQREG-LEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLD 876 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~------~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~ 876 (1088)
.++|++.+.||+|+||+||+|++. +++.||||++.... .....++.+|+.++.+ ++||||+++++++.+
T Consensus 70 ~~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~----l~hpnIv~~~~~~~~ 145 (367)
T 3l9p_A 70 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISK----FNHQNIVRCIGVSLQ 145 (367)
T ss_dssp GGGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHHH----CCCTTBCCEEEEECS
T ss_pred HhHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHHHh----CCCCCCCeEEEEEec
Confidence 357889999999999999999943 46789999997543 2334578899999987 679999999999999
Q ss_pred CCeEEEEEEecCCCCHHHHHhhcC-------CCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCC---C
Q 001384 877 GSEKILVYEYMEGGSLEDIISDRT-------RLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEG---K 946 (1088)
Q Consensus 877 ~~~~~lv~e~~~~gsL~~~l~~~~-------~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~---~ 946 (1088)
+...++||||+++|+|.++++... .+++.+++.++.||+.||+|||++ +|+||||||+||+++.++ .
T Consensus 146 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~~~~~~ 222 (367)
T 3l9p_A 146 SLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN---HFIHRDIAARNCLLTCPGPGRV 222 (367)
T ss_dssp SSSCEEEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESCSSTTCC
T ss_pred CCCCEEEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChhhEEEecCCCCce
Confidence 999999999999999999997643 489999999999999999999999 999999999999999555 5
Q ss_pred EEEeecccceeecCCC-CcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHh-CCcCCCCCchhHHHHHHhhh
Q 001384 947 ALVTDFGLARVVSAGD-SHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELAT-GRRALEGGEECLVEWGRRVM 1024 (1088)
Q Consensus 947 ~kl~Dfg~a~~~~~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~ellt-g~~p~~~~~~~~~~~~~~~~ 1024 (1088)
+||+|||+++...... ........+|+.|+|||++.+..++.++|||||||++|||++ |..||........ .....
T Consensus 223 ~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~pf~~~~~~~~--~~~i~ 300 (367)
T 3l9p_A 223 AKIGDFGMARDIYRAGYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEV--LEFVT 300 (367)
T ss_dssp EEECCCHHHHHHHHHSSCTTCCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHH--HHHHH
T ss_pred EEECCCccccccccccccccCCCcCCcccEECHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHHH--HHHHH
Confidence 9999999997653222 222334567899999999988899999999999999999998 9999987654221 11111
Q ss_pred ccCCCCCCccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhhCC
Q 001384 1025 GYGRHGPGRAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKILP 1085 (1088)
Q Consensus 1025 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i~~ 1085 (1088)
.... ...+...+..+.+++.+|++.||++||+++||++.|+.+..
T Consensus 301 ~~~~----------------~~~~~~~~~~l~~li~~~l~~dP~~Rps~~eil~~l~~~~~ 345 (367)
T 3l9p_A 301 SGGR----------------MDPPKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQ 345 (367)
T ss_dssp TTCC----------------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred cCCC----------------CCCCccCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhh
Confidence 1000 01122334568899999999999999999999999998754
No 105
>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*
Probab=100.00 E-value=1.2e-38 Score=368.67 Aligned_cols=256 Identities=23% Similarity=0.285 Sum_probs=206.5
Q ss_pred HHHHcCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCc---cchHHHHHHHHHHhCCCCCCCCCceeEEeeEEe
Q 001384 800 ILKATGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGL---EGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCL 875 (1088)
Q Consensus 800 ~~~~~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~ 875 (1088)
+....++|++.+.||+|+||+||+|+++ +++.||+|++.+... .....+.+|+.++.. ++||||+++++++.
T Consensus 64 ~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~----l~hp~Iv~l~~~~~ 139 (410)
T 3v8s_A 64 LRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAF----ANSPWVVQLFYAFQ 139 (410)
T ss_dssp HSCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHH----CCCTTBCCEEEEEE
T ss_pred cccCccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHh----CCCCCCCeEEEEEE
Confidence 3344578999999999999999999976 588999999976321 223457889999986 67999999999999
Q ss_pred cCCeEEEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccc
Q 001384 876 DGSEKILVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLA 955 (1088)
Q Consensus 876 ~~~~~~lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a 955 (1088)
++...|+||||++||+|.++++.. .+++..++.++.||+.||+|||++ +|+||||||+||+++.++++||+|||++
T Consensus 140 ~~~~~~lV~E~~~gg~L~~~l~~~-~~~e~~~~~~~~qi~~aL~~LH~~---givHrDLKp~NILl~~~g~ikL~DFG~a 215 (410)
T 3v8s_A 140 DDRYLYMVMEYMPGGDLVNLMSNY-DVPEKWARFYTAEVVLALDAIHSM---GFIHRDVKPDNMLLDKSGHLKLADFGTC 215 (410)
T ss_dssp CSSEEEEEECCCTTEEHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTC
T ss_pred ECCEEEEEEeCCCCCcHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCCHHHeeECCCCCEEEecccee
Confidence 999999999999999999999764 689999999999999999999999 9999999999999999999999999999
Q ss_pred eeecCCCCcccccccccccccCccccCCCC----CCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCCCC
Q 001384 956 RVVSAGDSHVSTTIAGTVGYVAPEYGQTWQ----ATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRHGP 1031 (1088)
Q Consensus 956 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~----~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~ 1031 (1088)
+.............+||+.|+|||++.... ++.++||||+||++|||++|+.||.+.... +....+.......
T Consensus 216 ~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~--~~~~~i~~~~~~~- 292 (410)
T 3v8s_A 216 MKMNKEGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLV--GTYSKIMNHKNSL- 292 (410)
T ss_dssp EECCTTSEEECCSCCSCGGGCCHHHHHTTTTTCEEETHHHHHHHHHHHHHHHHSSCTTCCSSHH--HHHHHHHTHHHHC-
T ss_pred EeeccCCcccccCCcCCccccCHHHhhccCCCcCCCCcceEecchHHHHHHHhCCCCCCCCChh--hHHHHHHhccccc-
Confidence 887654433445678999999999887655 789999999999999999999999876442 1111111000000
Q ss_pred CccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCC--CCCHHHHHH
Q 001384 1032 GRAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNA--RPNVKEVLA 1078 (1088)
Q Consensus 1032 ~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~--RPs~~eil~ 1078 (1088)
.. +.......++.+++.+|++.+|.+ ||+++||++
T Consensus 293 ---~~---------p~~~~~s~~~~~li~~lL~~~~~rlgR~~~~ei~~ 329 (410)
T 3v8s_A 293 ---TF---------PDDNDISKEAKNLICAFLTDREVRLGRNGVEEIKR 329 (410)
T ss_dssp ---CC---------CTTCCCCHHHHHHHHHHSSCGGGCTTSSCHHHHHT
T ss_pred ---cC---------CCcccccHHHHHHHHHHccChhhhCCCCCHHHHhc
Confidence 00 001112356788899999999988 999999875
No 106
>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*
Probab=100.00 E-value=4.5e-38 Score=352.60 Aligned_cols=266 Identities=23% Similarity=0.291 Sum_probs=201.9
Q ss_pred cCCCCccceecccCceEEEEEEeCCCcEEEEEEccccCcc--chHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeEE
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLPDGREVAVKKLQREGLE--GEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEKI 881 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~--~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~~ 881 (1088)
.++|++.+.||+|+||+||+|++.+|+.||+|++...... ....+.+|++++++ ++||||+++++++.++...+
T Consensus 20 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~----l~hp~iv~~~~~~~~~~~~~ 95 (311)
T 3niz_A 20 MEKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKE----LHHPNIVSLIDVIHSERCLT 95 (311)
T ss_dssp SCEEEEEEEEEECSSCEEEEEEETTSCEEEEEEEC------CHHHHHHHHHHHHHH----CCCTTBCCEEEEECCSSCEE
T ss_pred HhhhHhhhhccCCCCeEEEEEEECCCCEEEEEEEecccccchhhHHHHHHHHHHHH----cCCCCEeeeeeEEccCCEEE
Confidence 4689999999999999999999988999999999764322 23578899999997 67999999999999999999
Q ss_pred EEEEecCCCCHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccceeecC
Q 001384 882 LVYEYMEGGSLEDIISDR-TRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARVVSA 960 (1088)
Q Consensus 882 lv~e~~~~gsL~~~l~~~-~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~~~ 960 (1088)
+||||+++ +|.+++... ..+++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++....
T Consensus 96 lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~ 171 (311)
T 3niz_A 96 LVFEFMEK-DLKKVLDENKTGLQDSQIKIYLYQLLRGVAHCHQH---RILHRDLKPQNLLINSDGALKLADFGLARAFGI 171 (311)
T ss_dssp EEEECCSE-EHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEETTS
T ss_pred EEEcCCCC-CHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCchHhEEECCCCCEEEccCcCceecCC
Confidence 99999985 888887654 4599999999999999999999999 999999999999999999999999999987643
Q ss_pred CCCcccccccccccccCccccCC-CCCCcchhHHHHHHHHHHHHhCCcCCCCCch-hHHHHHHhhhccCCCCCCccccc-
Q 001384 961 GDSHVSTTIAGTVGYVAPEYGQT-WQATTKGDVYSFGVLAMELATGRRALEGGEE-CLVEWGRRVMGYGRHGPGRAVIP- 1037 (1088)
Q Consensus 961 ~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwslG~~l~elltg~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~- 1037 (1088)
.. .......+|+.|+|||++.+ ..++.++||||+||++|+|++|+.||.+..+ ......................+
T Consensus 172 ~~-~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 250 (311)
T 3niz_A 172 PV-RSYTHEVVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGKPLFPGVTDDDQLPKIFSILGTPNPREWPQVQEL 250 (311)
T ss_dssp CC-C---CCCCCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSTTTHHHHHHHHHCCCCTTTSGGGTTS
T ss_pred Cc-ccccCCcccCCcCCHHHhcCCCCCCchHHhHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHCCCChHHhhhhhcc
Confidence 22 22334578999999998765 5789999999999999999999999987544 12111111111111000000000
Q ss_pred -hhh-------cCC-CccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1038 -VVL-------LGS-GLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1038 -~~~-------~~~-~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
... ... ..........++.+++.+|++.||++|||++|+++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 300 (311)
T 3niz_A 251 PLWKQRTFQVFEKKPWSSIIPGFCQEGIDLLSNMLCFDPNKRISARDAMN 300 (311)
T ss_dssp HHHHSCCCCCCCCCCHHHHSTTCCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred chhhhcccccccCCcHHHhCcccCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence 000 000 00001122357889999999999999999999986
No 107
>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...
Probab=100.00 E-value=5.8e-39 Score=356.12 Aligned_cols=256 Identities=26% Similarity=0.391 Sum_probs=214.1
Q ss_pred HcCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeEE
Q 001384 803 ATGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGLEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEKI 881 (1088)
Q Consensus 803 ~~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~~ 881 (1088)
..++|++.+.||+|+||.||+|.++ +++.||+|++.... ...+.+.+|++++++ ++||||+++++++.++...+
T Consensus 11 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~E~~~l~~----l~h~~i~~~~~~~~~~~~~~ 85 (288)
T 3kfa_A 11 ERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-MEVEEFLKEAAVMKE----IKHPNLVQLLGVCTREPPFY 85 (288)
T ss_dssp CGGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSCS-THHHHHHHHHHHHHH----CCCTTBCCEEEEECSSSSEE
T ss_pred cccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcCH-HHHHHHHHHHHHHHh----CCCCCEeeEEEEEccCCCEE
Confidence 3467889999999999999999986 48899999997653 345678899999997 67999999999999999999
Q ss_pred EEEEecCCCCHHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccceeec
Q 001384 882 LVYEYMEGGSLEDIISDR--TRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARVVS 959 (1088)
Q Consensus 882 lv~e~~~~gsL~~~l~~~--~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~~ 959 (1088)
+||||+++++|.+++... ..+++..++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||.+....
T Consensus 86 ~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~ 162 (288)
T 3kfa_A 86 IITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLMT 162 (288)
T ss_dssp EEEECCTTEEHHHHHHHCCTTTSCHHHHHHHHHHHHHHHHHHHHH---TCCCSCCSGGGEEECGGGCEEECCCCGGGTSC
T ss_pred EEEEcCCCCcHHHHHHhcccCCccHhHHHHHHHHHHHHHHHHHHC---CccCCCCCcceEEEcCCCCEEEccCccceecc
Confidence 999999999999999864 3599999999999999999999999 99999999999999999999999999998765
Q ss_pred CCCCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHh-CCcCCCCCchh-HHHHHHhhhccCCCCCCccccc
Q 001384 960 AGDSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELAT-GRRALEGGEEC-LVEWGRRVMGYGRHGPGRAVIP 1037 (1088)
Q Consensus 960 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~ellt-g~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 1037 (1088)
...........+|+.|+|||.+.+..++.++||||+|+++|+|++ |..||...... ..+......
T Consensus 163 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~~g~~p~~~~~~~~~~~~~~~~~------------- 229 (288)
T 3kfa_A 163 GDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDY------------- 229 (288)
T ss_dssp SSSSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHHHHHTTC-------------
T ss_pred CCccccccCCccccCcCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhccC-------------
Confidence 444444445567889999999988899999999999999999999 99999875432 111111110
Q ss_pred hhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhhCC
Q 001384 1038 VVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKILP 1085 (1088)
Q Consensus 1038 ~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i~~ 1085 (1088)
....+...+..+.+++.+|++.||.+||+++|+++.|++++.
T Consensus 230 ------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~~~~~l~~~~~ 271 (288)
T 3kfa_A 230 ------RMERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMFQ 271 (288)
T ss_dssp ------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred ------CCCCCCCCCHHHHHHHHHHhCCChhhCcCHHHHHHHHHHHHH
Confidence 011122334678899999999999999999999999998753
No 108
>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0
Probab=100.00 E-value=2.9e-38 Score=347.08 Aligned_cols=253 Identities=32% Similarity=0.527 Sum_probs=196.8
Q ss_pred CCCCccceecccCceEEEEEEeCCCcEEEEEEccccCcc----chHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeE
Q 001384 805 GKFSEDRIIGKGGFGTVYRGVLPDGREVAVKKLQREGLE----GEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEK 880 (1088)
Q Consensus 805 ~~~~~~~~LG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~----~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~ 880 (1088)
++|++.+.||+|+||.||+|.+. ++.||||++...... ..+.+.+|+++++. ++||||+++++++.+++..
T Consensus 7 ~~~~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~----l~h~~i~~~~~~~~~~~~~ 81 (271)
T 3dtc_A 7 AELTLEEIIGIGGFGKVYRAFWI-GDEVAVKAARHDPDEDISQTIENVRQEAKLFAM----LKHPNIIALRGVCLKEPNL 81 (271)
T ss_dssp TSEEEEEEEEEETTEEEEEEEET-TEEEEEEEC----------CHHHHHHHHHHHHH----CCCTTBCCEEEEECCC--C
T ss_pred hheeeeeeeccCCCeEEEEEEEc-CCeEEEEEEecCCcccHHHHHHHHHHHHHHHHh----cCCCCEeeEEEEEecCCce
Confidence 57889999999999999999985 889999999764322 23578899999987 6799999999999999999
Q ss_pred EEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcC--------CCCEEEeec
Q 001384 881 ILVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDK--------EGKALVTDF 952 (1088)
Q Consensus 881 ~lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~--------~~~~kl~Df 952 (1088)
++||||+++++|.++++. .++++.+++.++.|++.||+|||++...+|+||||||+||+++. ++.+||+||
T Consensus 82 ~lv~e~~~~~~L~~~~~~-~~~~~~~~~~i~~~l~~~l~~lH~~~~~~i~H~dikp~Nil~~~~~~~~~~~~~~~kl~Df 160 (271)
T 3dtc_A 82 CLVMEFARGGPLNRVLSG-KRIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDF 160 (271)
T ss_dssp EEEEECCTTEEHHHHHTS-SCCCHHHHHHHHHHHHHHHHHHHHSSSSCCCCSCCSGGGEEESSCCSSSCCSSCCEEECCC
T ss_pred EEEEEcCCCCCHHHHhhc-CCCCHHHHHHHHHHHHHHHHHHHhCCCCceeecCCchHHEEEecccccccccCcceEEccC
Confidence 999999999999999864 47999999999999999999999992222999999999999986 778999999
Q ss_pred ccceeecCCCCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCCCCC
Q 001384 953 GLARVVSAGDSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRHGPG 1032 (1088)
Q Consensus 953 g~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~ 1032 (1088)
|.++...... .....||+.|+|||.+.+..++.++||||+|+++|+|++|+.||.+.......+........
T Consensus 161 g~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~----- 232 (271)
T 3dtc_A 161 GLAREWHRTT---KMSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGIDGLAVAYGVAMNKLA----- 232 (271)
T ss_dssp CC----------------CCGGGSCHHHHHHCCCSHHHHHHHHHHHHHHHHHCCCTTTTSCHHHHHHHHHTSCCC-----
T ss_pred Cccccccccc---ccCCCCccceeCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHhhhcCCCC-----
Confidence 9998654322 22456899999999998889999999999999999999999999876553332222211000
Q ss_pred ccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhh
Q 001384 1033 RAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKI 1083 (1088)
Q Consensus 1033 ~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i 1083 (1088)
...+...+..+.+++.+|++.||++||+++|+++.|+++
T Consensus 233 ------------~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~L~~l 271 (271)
T 3dtc_A 233 ------------LPIPSTCPEPFAKLMEDCWNPDPHSRPSFTNILDQLTTI 271 (271)
T ss_dssp ------------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHC-
T ss_pred ------------CCCCcccCHHHHHHHHHHhcCCcccCcCHHHHHHHHhcC
Confidence 001222345788999999999999999999999999875
No 109
>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*
Probab=100.00 E-value=2.9e-38 Score=352.27 Aligned_cols=261 Identities=20% Similarity=0.290 Sum_probs=209.6
Q ss_pred cCCCCccceecccCceEEEEEEe-CCCcEEEEEEccccCccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeEEE
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVL-PDGREVAVKKLQREGLEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEKIL 882 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~~l 882 (1088)
.++|++.+.||+|+||.||+|++ .+++.||||++.... ....+.+|++++..+. +|+|++++++++.++...++
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~e~~~~~~l~---~~~~i~~~~~~~~~~~~~~l 83 (298)
T 1csn_A 9 GVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRS--DAPQLRDEYRTYKLLA---GCTGIPNVYYFGQEGLHNVL 83 (298)
T ss_dssp TTTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCT--TSCCHHHHHHHHHHTT---TCTTCCCEEEEEEETTEEEE
T ss_pred ccceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccCC--ccHHHHHHHHHHHHHh---cCCCCCeEEeecCCCceeEE
Confidence 46799999999999999999996 478999999987542 3345778888888743 79999999999999999999
Q ss_pred EEEecCCCCHHHHHhhcC-CCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCC-----EEEeecccce
Q 001384 883 VYEYMEGGSLEDIISDRT-RLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGK-----ALVTDFGLAR 956 (1088)
Q Consensus 883 v~e~~~~gsL~~~l~~~~-~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~-----~kl~Dfg~a~ 956 (1088)
||||+ +++|.++++... ++++.+++.++.|++.||+|||++ +|+||||||+||+++.++. +||+|||+++
T Consensus 84 v~e~~-~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~NIl~~~~~~~~~~~~kl~Dfg~~~ 159 (298)
T 1csn_A 84 VIDLL-GPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIHEK---SLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVK 159 (298)
T ss_dssp EEECC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEECCSSSTTTTCEEECCCTTCE
T ss_pred EEEec-CCCHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEeccCCCCCCCeEEEEECcccc
Confidence 99999 899999998754 599999999999999999999999 9999999999999987776 9999999998
Q ss_pred eecCCCCc------ccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchh-HHHHHHhhhccCCC
Q 001384 957 VVSAGDSH------VSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEEC-LVEWGRRVMGYGRH 1029 (1088)
Q Consensus 957 ~~~~~~~~------~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~-~~~~~~~~~~~~~~ 1029 (1088)
........ ......||+.|+|||++.+..++.++||||||+++|||++|+.||.+.... ..+...........
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~ 239 (298)
T 1csn_A 160 FYRDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKKQS 239 (298)
T ss_dssp ESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHHHHHHHHHHHHH
T ss_pred ccccccccccccccCccCCCCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHcCCCCcchhhccccHHHHHHHHhhccC
Confidence 77543221 234567999999999999999999999999999999999999999875321 11111111000000
Q ss_pred CCCccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhhCC
Q 001384 1030 GPGRAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKILP 1085 (1088)
Q Consensus 1030 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i~~ 1085 (1088)
.. .+ . .....+..+.+++.+|++.||++||++++|++.|+++++
T Consensus 240 ~~----~~-~-------~~~~~~~~l~~li~~~l~~dp~~RP~~~~l~~~l~~~~~ 283 (298)
T 1csn_A 240 TP----LR-E-------LCAGFPEEFYKYMHYARNLAFDATPDYDYLQGLFSKVLE 283 (298)
T ss_dssp SC----HH-H-------HTTTSCHHHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHH
T ss_pred cc----HH-H-------HHhhCcHHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHH
Confidence 00 00 0 011234678899999999999999999999999999864
No 110
>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*
Probab=100.00 E-value=2.2e-38 Score=359.58 Aligned_cols=245 Identities=24% Similarity=0.305 Sum_probs=200.7
Q ss_pred CCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCccc---hHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeE
Q 001384 805 GKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGLEG---EREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEK 880 (1088)
Q Consensus 805 ~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~---~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~ 880 (1088)
++|++.+.||+|+||.||+|+++ +++.||+|++.+..... .+.+..|..++.+. .+||||+++++++.++...
T Consensus 9 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~---~~hp~iv~l~~~~~~~~~~ 85 (345)
T 3a8x_A 9 QDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQA---SNHPFLVGLHSCFQTESRL 85 (345)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHT---TTCTTBCCEEEEEECSSEE
T ss_pred hheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhc---CCCCccCeEEEEEEeCCEE
Confidence 46889999999999999999976 68899999998653322 34577889888763 2799999999999999999
Q ss_pred EEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccceeecC
Q 001384 881 ILVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARVVSA 960 (1088)
Q Consensus 881 ~lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~~~ 960 (1088)
|+||||+++|+|.+++.....+++..++.++.||+.||+|||++ +|+||||||+||+++.++++||+|||+++....
T Consensus 86 ~lv~e~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~~kL~DFG~a~~~~~ 162 (345)
T 3a8x_A 86 FFVIEYVNGGDLMFHMQRQRKLPEEHARFYSAEISLALNYLHER---GIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLR 162 (345)
T ss_dssp EEEECCCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCGGGCBCSCC
T ss_pred EEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCHHHEEECCCCCEEEEeccccccccC
Confidence 99999999999999999888899999999999999999999999 999999999999999999999999999986432
Q ss_pred CCCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCch-------hHHHHHHhhhccCCCCCCc
Q 001384 961 GDSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEE-------CLVEWGRRVMGYGRHGPGR 1033 (1088)
Q Consensus 961 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~-------~~~~~~~~~~~~~~~~~~~ 1033 (1088)
. ........||+.|+|||++.+..++.++||||+||++|||++|+.||..... ........+..
T Consensus 163 ~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~i~~-------- 233 (345)
T 3a8x_A 163 P-GDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILE-------- 233 (345)
T ss_dssp T-TCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTTTC-------CHHHHHHHHHH--------
T ss_pred C-CCcccccCCCccccCccccCCCCCChHHhHHHHHHHHHHHHhCCCCcCCcccccccccccHHHHHHHHHc--------
Confidence 2 2234456899999999999998999999999999999999999999975311 00011111110
Q ss_pred cccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCH
Q 001384 1034 AVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNV 1073 (1088)
Q Consensus 1034 ~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~ 1073 (1088)
.....+.....++.+++.+|++.||++||++
T Consensus 234 ---------~~~~~p~~~s~~~~~li~~lL~~dP~~R~~~ 264 (345)
T 3a8x_A 234 ---------KQIRIPRSLSVKAASVLKSFLNKDPKERLGC 264 (345)
T ss_dssp ---------CCCCCCTTSCHHHHHHHHHHTCSSTTTSTTC
T ss_pred ---------CCCCCCCCCCHHHHHHHHHHhcCCHhHCCCC
Confidence 0001122234578889999999999999996
No 111
>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A
Probab=100.00 E-value=6.6e-38 Score=358.48 Aligned_cols=250 Identities=24% Similarity=0.299 Sum_probs=195.7
Q ss_pred cCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeEEE
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGLEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEKIL 882 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~~l 882 (1088)
.++|++.+.||+|+||+||+|+++ +++.||||++.... ...+.+.+|+.+++. ++||||+++++++.++...++
T Consensus 19 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~----l~hpniv~~~~~~~~~~~~~l 93 (361)
T 3uc3_A 19 SDRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGA-AIDENVQREIINHRS----LRHPNIVRFKEVILTPTHLAI 93 (361)
T ss_dssp TTTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESST-TSCHHHHHHHHHHHH----CCCTTBCCEEEEEECSSEEEE
T ss_pred CCcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCc-cccHHHHHHHHHHHh----CCCCCCCcEEEEEeeCCEEEE
Confidence 468999999999999999999986 78999999997653 334678899999987 679999999999999999999
Q ss_pred EEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCC--EEEeecccceeecC
Q 001384 883 VYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGK--ALVTDFGLARVVSA 960 (1088)
Q Consensus 883 v~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~--~kl~Dfg~a~~~~~ 960 (1088)
||||+++|+|.+++....++++.+++.++.|++.||+|||++ +|+||||||+||+++.++. +||+|||+++....
T Consensus 94 v~e~~~~~~L~~~l~~~~~~~~~~~~~i~~ql~~~L~~LH~~---~ivH~Dlkp~Nill~~~~~~~~kl~Dfg~a~~~~~ 170 (361)
T 3uc3_A 94 IMEYASGGELYERICNAGRFSEDEARFFFQQLLSGVSYCHSM---QICHRDLKLENTLLDGSPAPRLKICDFGYSKSSVL 170 (361)
T ss_dssp EEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TCCSCCCCGGGEEECSSSSCCEEECCCCCC-----
T ss_pred EEEeCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEcCCCCceEEEeecCccccccc
Confidence 999999999999998888899999999999999999999999 9999999999999987765 99999999975332
Q ss_pred CCCcccccccccccccCccccCCCCCCcc-hhHHHHHHHHHHHHhCCcCCCCCch--hHHHHHHhhhccCCCCCCccccc
Q 001384 961 GDSHVSTTIAGTVGYVAPEYGQTWQATTK-GDVYSFGVLAMELATGRRALEGGEE--CLVEWGRRVMGYGRHGPGRAVIP 1037 (1088)
Q Consensus 961 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~-~DvwslG~~l~elltg~~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 1037 (1088)
. .......||+.|+|||++.+..++.+ +||||+||++|+|++|+.||.+... ................+
T Consensus 171 ~--~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~------ 242 (361)
T 3uc3_A 171 H--SQPKSTVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPRDYRKTIQRILSVKYSIP------ 242 (361)
T ss_dssp ------------CTTSCHHHHHCSSCCHHHHHHHHHHHHHHHHHHSSCSCC----CCCHHHHHHHHHTTCCCCC------
T ss_pred c--CCCCCCcCCCCcCChhhhcCCCCCCCeeeeehhHHHHHHHHhCCCCCCCCccHHHHHHHHHHHhcCCCCCC------
Confidence 2 22334579999999999888777665 8999999999999999999986533 12222222221111000
Q ss_pred hhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1038 VVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1038 ~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
........+.+++.+|++.||++||++.|+++
T Consensus 243 ---------~~~~~s~~~~~li~~~L~~dP~~Rps~~ell~ 274 (361)
T 3uc3_A 243 ---------DDIRISPECCHLISRIFVADPATRISIPEIKT 274 (361)
T ss_dssp ---------TTSCCCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred ---------CcCCCCHHHHHHHHHHccCChhHCcCHHHHHh
Confidence 01112356788999999999999999999986
No 112
>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*
Probab=100.00 E-value=1.6e-38 Score=359.30 Aligned_cols=272 Identities=25% Similarity=0.333 Sum_probs=213.7
Q ss_pred CCCCccceecccCceEEEEEEe-----CCCcEEEEEEccccCccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEe--cC
Q 001384 805 GKFSEDRIIGKGGFGTVYRGVL-----PDGREVAVKKLQREGLEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCL--DG 877 (1088)
Q Consensus 805 ~~~~~~~~LG~G~~g~Vy~~~~-----~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~--~~ 877 (1088)
++|++.+.||+|+||.||+|++ .+++.||||++........+.+.+|++++++ ++||||+++++++. +.
T Consensus 23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~----l~h~~i~~~~~~~~~~~~ 98 (327)
T 3lxl_A 23 RHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKA----LHSDFIVKYRGVSYGPGR 98 (327)
T ss_dssp GGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCCHHHHHHHHHHHHHHHT----CCCTTBCCEEEEEECSSS
T ss_pred hhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCCHHHHHHHHHHHHHHHh----cCCCceeEEEEEEecCCC
Confidence 5788999999999999999983 3688999999987765566779999999997 68999999999887 45
Q ss_pred CeEEEEEEecCCCCHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccce
Q 001384 878 SEKILVYEYMEGGSLEDIISD-RTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLAR 956 (1088)
Q Consensus 878 ~~~~lv~e~~~~gsL~~~l~~-~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~ 956 (1088)
...++||||+++++|.++++. ...+++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||.++
T Consensus 99 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~ 175 (327)
T 3lxl_A 99 QSLRLVMEYLPSGCLRDFLQRHRARLDASRLLLYSSQICKGMEYLGSR---RCVHRDLAARNILVESEAHVKIADFGLAK 175 (327)
T ss_dssp CEEEEEEECCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEEECCGGGCE
T ss_pred ceEEEEEeecCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCChhhEEECCCCCEEEcccccce
Confidence 678999999999999999976 45699999999999999999999999 99999999999999999999999999998
Q ss_pred eecCCCCc--ccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCCCCCcc
Q 001384 957 VVSAGDSH--VSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRHGPGRA 1034 (1088)
Q Consensus 957 ~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 1034 (1088)
........ ......+|..|+|||++.+..++.++||||+|+++|+|++|+.||.......... ............
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~---~~~~~~~~~~~~ 252 (327)
T 3lxl_A 176 LLPLDKDYYVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKSCSPSAEFLRM---MGCERDVPALSR 252 (327)
T ss_dssp ECCTTCSEEECSSCCCSCGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHH---CC----CCHHHH
T ss_pred ecccCCccceeeccCCccccccCHHHhccCCCChHHhHHHHHHHHHHHHhCCCCCccccchhhhh---cccccccccHHH
Confidence 77543322 2234567888999999988889999999999999999999999997643211111 000000000011
Q ss_pred ccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhhCCC
Q 001384 1035 VIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKILPH 1086 (1088)
Q Consensus 1035 ~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i~~~ 1086 (1088)
.......+.....+...+..+.+++.+|++.||++||+++|+++.|+++...
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~ 304 (327)
T 3lxl_A 253 LLELLEEGQRLPAPPACPAEVHELMKLCWAPSPQDRPSFSALGPQLDMLWSG 304 (327)
T ss_dssp HHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHC---
T ss_pred HHHHhhcccCCCCCCcccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhh
Confidence 1111111222223344557789999999999999999999999999998653
No 113
>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...
Probab=100.00 E-value=1.4e-38 Score=359.45 Aligned_cols=254 Identities=26% Similarity=0.440 Sum_probs=201.8
Q ss_pred CCCCccceecccCceEEEEEEeC-CCc----EEEEEEccccC-ccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCC
Q 001384 805 GKFSEDRIIGKGGFGTVYRGVLP-DGR----EVAVKKLQREG-LEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGS 878 (1088)
Q Consensus 805 ~~~~~~~~LG~G~~g~Vy~~~~~-~~~----~vavK~~~~~~-~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~ 878 (1088)
++|++.+.||+|+||+||+|++. +++ +||+|++.... ....+.+.+|+.++++ ++||||+++++++.++.
T Consensus 15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~----l~h~~iv~~~~~~~~~~ 90 (327)
T 3poz_A 15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMAS----VDNPHVCRLLGICLTST 90 (327)
T ss_dssp GGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHHHH----CCBTTBCCEEEEEESSS
T ss_pred HHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHHHh----CCCCCEeEEEEEEecCC
Confidence 56889999999999999999964 444 36888886543 2345689999999997 67999999999998765
Q ss_pred eEEEEEEecCCCCHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeeccccee
Q 001384 879 EKILVYEYMEGGSLEDIISD-RTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARV 957 (1088)
Q Consensus 879 ~~~lv~e~~~~gsL~~~l~~-~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~ 957 (1088)
.++|+||+++|+|.+++.. ...+++..++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++.
T Consensus 91 -~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~ 166 (327)
T 3poz_A 91 -VQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKL 166 (327)
T ss_dssp -EEEEEECCTTCBHHHHHHHSTTSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEETTEEEECCTTHHHH
T ss_pred -eEEEEEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhC---CeeCCCCChheEEECCCCCEEEccCcceeE
Confidence 7789999999999999977 45799999999999999999999999 999999999999999999999999999987
Q ss_pred ecCCCCc-ccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHh-CCcCCCCCchhHH-HHHHhhhccCCCCCCcc
Q 001384 958 VSAGDSH-VSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELAT-GRRALEGGEECLV-EWGRRVMGYGRHGPGRA 1034 (1088)
Q Consensus 958 ~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~ellt-g~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~ 1034 (1088)
....... ......+|..|+|||++.+..++.++||||||+++|||++ |+.||.+...... ......
T Consensus 167 ~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~----------- 235 (327)
T 3poz_A 167 LGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKG----------- 235 (327)
T ss_dssp HTTTCC-------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHHHTT-----------
T ss_pred ccCCcccccccCCCccccccChHHhccCCCCchhhhhhhHHHHHHHHhcCCCCccCCCHHHHHHHHHcC-----------
Confidence 6543322 2233456889999999999999999999999999999999 9999987544221 111111
Q ss_pred ccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhhCC
Q 001384 1035 VIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKILP 1085 (1088)
Q Consensus 1035 ~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i~~ 1085 (1088)
.....+......+.+++.+|++.||++||+++|+++.|+++.+
T Consensus 236 --------~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~ell~~l~~~~~ 278 (327)
T 3poz_A 236 --------ERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMAR 278 (327)
T ss_dssp --------CCCCCCTTBCHHHHHHHHHHTCSCGGGSCCHHHHHHHHHHHHT
T ss_pred --------CCCCCCccCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHh
Confidence 0111122344578899999999999999999999999998764
No 114
>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A
Probab=100.00 E-value=5.1e-38 Score=358.26 Aligned_cols=250 Identities=24% Similarity=0.281 Sum_probs=203.2
Q ss_pred CCCCccceecccCceEEEEEEeC-CCcEEEEEEccccC-----ccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCC
Q 001384 805 GKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREG-----LEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGS 878 (1088)
Q Consensus 805 ~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~-----~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~ 878 (1088)
++|++.+.||+|+||+||+|+++ +++.||||++.... ....+.+.+|++++.. ++||||+++++++.+++
T Consensus 24 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~----l~hpnIv~~~~~~~~~~ 99 (351)
T 3c0i_A 24 DVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHM----LKHPHIVELLETYSSDG 99 (351)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHH----CCCTTBCCEEEEEEETT
T ss_pred cceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHh----CCCCCCCcEEEEEEeCC
Confidence 46999999999999999999975 68999999986432 1235678999999987 67999999999999999
Q ss_pred eEEEEEEecCCCCHHHHHhhc----CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCC---EEEee
Q 001384 879 EKILVYEYMEGGSLEDIISDR----TRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGK---ALVTD 951 (1088)
Q Consensus 879 ~~~lv~e~~~~gsL~~~l~~~----~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~---~kl~D 951 (1088)
..|+||||+++|+|.+++... ..+++..++.++.||+.||+|||++ +|+||||||+||+++.++. +||+|
T Consensus 100 ~~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivHrDlkp~NIl~~~~~~~~~vkl~D 176 (351)
T 3c0i_A 100 MLYMVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCHDN---NIIHRDVKPHCVLLASKENSAPVKLGG 176 (351)
T ss_dssp EEEEEEECCSSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECSSSTTCCEEECC
T ss_pred EEEEEEeCCCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCChHHeEEecCCCCCcEEEec
Confidence 999999999999999887543 2489999999999999999999999 9999999999999987655 99999
Q ss_pred cccceeecCCCCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCCCC
Q 001384 952 FGLARVVSAGDSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRHGP 1031 (1088)
Q Consensus 952 fg~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~ 1031 (1088)
||+++...... .......||+.|+|||++.+..++.++||||+||++|+|++|+.||.+..+..... ...... .
T Consensus 177 fg~a~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~---i~~~~~-~- 250 (351)
T 3c0i_A 177 FGVAIQLGESG-LVAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPFYGTKERLFEG---IIKGKY-K- 250 (351)
T ss_dssp CTTCEECCTTS-CBCCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCSSHHHHHHH---HHHTCC-C-
T ss_pred CcceeEecCCC-eeecCCcCCcCccCHHHHcCCCCCchHhhHHHHHHHHHHHHCCCCCCCcHHHHHHH---HHcCCC-C-
Confidence 99998765432 22345679999999999998899999999999999999999999998754322111 110000 0
Q ss_pred CccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1032 GRAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1032 ~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
..+.. ......++.+++.+|++.||++||++.|+++
T Consensus 251 ---~~~~~--------~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~ 286 (351)
T 3c0i_A 251 ---MNPRQ--------WSHISESAKDLVRRMLMLDPAERITVYEALN 286 (351)
T ss_dssp ---CCHHH--------HTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred ---CCccc--------cccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 00000 0122357888999999999999999999975
No 115
>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=1.1e-37 Score=354.17 Aligned_cols=270 Identities=27% Similarity=0.376 Sum_probs=207.5
Q ss_pred HHcCCCCccceecccCceEEEEEEeCCCcEEEEEEccccCccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecC----
Q 001384 802 KATGKFSEDRIIGKGGFGTVYRGVLPDGREVAVKKLQREGLEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDG---- 877 (1088)
Q Consensus 802 ~~~~~~~~~~~LG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~---- 877 (1088)
...++|++.+.||+|+||.||+|+++ ++.||||++... ....+..|.+++.... ++||||+++++++...
T Consensus 34 ~~~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~---~~~~~~~e~~~~~~~~--~~h~~i~~~~~~~~~~~~~~ 107 (337)
T 3mdy_A 34 TIAKQIQMVKQIGKGRYGEVWMGKWR-GEKVAVKVFFTT---EEASWFRETEIYQTVL--MRHENILGFIAADIKGTGSW 107 (337)
T ss_dssp THHHHCEEEEEEEEETTEEEEEEEET-TEEEEEEEEEGG---GHHHHHHHHHHHTSTT--CCCTTBCCEEEEEEESCGGG
T ss_pred ccccceEEEeEeecCCCeEEEEEEEC-CceEEEEEEecc---ccchhhhHHHHHHHHh--hcCCCeeeEEEEEccCCCCC
Confidence 34568999999999999999999985 899999998654 3445566777766543 5899999999999887
Q ss_pred CeEEEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcC-----CCCeEecCCCCCCEEEcCCCCEEEeec
Q 001384 878 SEKILVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHEC-----YPPIVHRDVKASNVLLDKEGKALVTDF 952 (1088)
Q Consensus 878 ~~~~lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~-----~~~ivH~DLkp~NIll~~~~~~kl~Df 952 (1088)
...++||||+++|+|.++++.. .+++.+++.++.|++.||+|||+++ .++|+||||||+||+++.++.+||+||
T Consensus 108 ~~~~lv~e~~~~g~L~~~l~~~-~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kl~Df 186 (337)
T 3mdy_A 108 TQLYLITDYHENGSLYDYLKST-TLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVKKNGTCCIADL 186 (337)
T ss_dssp CEEEEEECCCTTCBHHHHHHHC-CBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCC
T ss_pred CceEEEEeccCCCcHHHHhhcc-CCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCEEecccchHHEEECCCCCEEEEeC
Confidence 7889999999999999999765 6999999999999999999999862 238999999999999999999999999
Q ss_pred ccceeecCCCCcc---cccccccccccCccccCCCCCCcc------hhHHHHHHHHHHHHhC----------CcCCCCCc
Q 001384 953 GLARVVSAGDSHV---STTIAGTVGYVAPEYGQTWQATTK------GDVYSFGVLAMELATG----------RRALEGGE 1013 (1088)
Q Consensus 953 g~a~~~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~------~DvwslG~~l~elltg----------~~p~~~~~ 1013 (1088)
|+++.+....... .....||+.|+|||++.+..++.+ +|||||||++|||++| +.||....
T Consensus 187 g~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~~~~~~~~~~~p~~~~~ 266 (337)
T 3mdy_A 187 GLAVKFISDTNEVDIPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVARRCVSGGIVEEYQLPYHDLV 266 (337)
T ss_dssp TTCEECC---------CCSSCSCGGGCCHHHHTTCCCTTCTHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTS
T ss_pred CCceeeccccccccCCCCCCccCcceeChhhcccccCCccccCccccchHHHHHHHHHHHhccCcccccccccccHhhhc
Confidence 9998765432221 234579999999999887766655 9999999999999999 66665432
Q ss_pred h---hHHHHHHhhhccCCCCCCccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhhCCCCC
Q 001384 1014 E---CLVEWGRRVMGYGRHGPGRAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKILPHCD 1088 (1088)
Q Consensus 1014 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i~~~~~ 1088 (1088)
. .......... ... .....+. ......+..++.+++.+|++.||++||+++||++.|+++.+..|
T Consensus 267 ~~~~~~~~~~~~~~-~~~---~~~~~~~------~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l~~~~~ 334 (337)
T 3mdy_A 267 PSDPSYEDMREIVC-IKK---LRPSFPN------RWSSDECLRQMGKLMTECWAHNPASRLTALRVKKTLAKMSESQD 334 (337)
T ss_dssp CSSCCHHHHHHHHT-TSC---CCCCCCG------GGGGSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHTTT
T ss_pred CCCCchhhhHHHHh-hhc---cCccccc------cchhhHHHHHHHHHHHHhhhhChhhCCCHHHHHHHHHHHHhhcc
Confidence 1 1111111111 000 0000000 00123677889999999999999999999999999999876543
No 116
>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*
Probab=100.00 E-value=3e-38 Score=361.47 Aligned_cols=247 Identities=26% Similarity=0.303 Sum_probs=196.3
Q ss_pred CCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCccc---hHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeE
Q 001384 805 GKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGLEG---EREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEK 880 (1088)
Q Consensus 805 ~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~---~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~ 880 (1088)
++|++.+.||+|+||+||+|+.+ +++.||||++.+..... ...+..|..++.+ .++||||+++++++.+.+..
T Consensus 38 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~---~~~hp~Iv~l~~~~~~~~~~ 114 (373)
T 2r5t_A 38 SDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLK---NVKHPFLVGLHFSFQTADKL 114 (373)
T ss_dssp GGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBC---CCCCTTBCCEEEEEECSSEE
T ss_pred hheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHH---hCCCCCCCCEEEEEEeCCEE
Confidence 46899999999999999999976 58899999998754322 2345556555322 36899999999999999999
Q ss_pred EEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccceeecC
Q 001384 881 ILVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARVVSA 960 (1088)
Q Consensus 881 ~lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~~~ 960 (1088)
|+||||+++|+|.+++++...+++..++.++.||+.||+|||++ +|+||||||+||+++.++++||+|||+++....
T Consensus 115 ~lv~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NIll~~~g~ikL~DFG~a~~~~~ 191 (373)
T 2r5t_A 115 YFVLDYINGGELFYHLQRERCFLEPRARFYAAEIASALGYLHSL---NIVYRDLKPENILLDSQGHIVLTDFGLCKENIE 191 (373)
T ss_dssp EEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCCBCGGGBC
T ss_pred EEEEeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCHHHEEECCCCCEEEeeCcccccccc
Confidence 99999999999999999888899999999999999999999999 999999999999999999999999999976432
Q ss_pred CCCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCCCCCccccchhh
Q 001384 961 GDSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRHGPGRAVIPVVL 1040 (1088)
Q Consensus 961 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1040 (1088)
. .......+||+.|+|||++.+..++.++||||+||++|||++|+.||.+.... +....+.....
T Consensus 192 ~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~--~~~~~i~~~~~------------ 256 (373)
T 2r5t_A 192 H-NSTTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNTA--EMYDNILNKPL------------ 256 (373)
T ss_dssp C-CCCCCSBSCCCCCCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSBHH--HHHHHHHHSCC------------
T ss_pred C-CCccccccCCccccCHHHhCCCCCCchhhhHHHHHHHHHHHcCCCCCCCCCHH--HHHHHHHhccc------------
Confidence 2 22344568999999999999999999999999999999999999999875442 12222221100
Q ss_pred cCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHH
Q 001384 1041 LGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVL 1077 (1088)
Q Consensus 1041 ~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil 1077 (1088)
..+......+.+++.+|++.||.+||++.+.+
T Consensus 257 -----~~~~~~~~~~~~li~~lL~~dp~~R~~~~~~~ 288 (373)
T 2r5t_A 257 -----QLKPNITNSARHLLEGLLQKDRTKRLGAKDDF 288 (373)
T ss_dssp -----CCCSSSCHHHHHHHHHHTCSSGGGSTTTTTTH
T ss_pred -----CCCCCCCHHHHHHHHHHcccCHHhCCCCCCCH
Confidence 00112235678899999999999999986433
No 117
>3lb7_A RAF proto-oncogene serine/threonine-protein kinas; kinase domain, alternative splicing, ATP-binding, disease MU kinase, metal-binding; 4.00A {Homo sapiens} PDB: 3omv_A*
Probab=100.00 E-value=1.5e-37 Score=347.47 Aligned_cols=260 Identities=27% Similarity=0.357 Sum_probs=202.1
Q ss_pred cCCCCccceecccCceEEEEEEeCCCcEEEEEEccccCc--cchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeEE
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLPDGREVAVKKLQREGL--EGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEKI 881 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~~ 881 (1088)
.++|++.+.||+|+||+||+|++. ..+|+|+++.... ...+.+.+|++++++ ++||||+++++++. .+..+
T Consensus 35 ~~~~~~~~~lG~G~~g~Vy~~~~~--~~~avk~~k~~~~~~~~~~~~~~E~~~l~~----l~h~~iv~~~~~~~-~~~~~ 107 (307)
T 3lb7_A 35 ASEVMLSTRIGSGSFGTVYKGKWH--GDVAVKILKVVDPTPEQFQAFRNEVAVLRK----TRHVNILLFMGYMT-KDNLA 107 (307)
T ss_dssp TTSCCEEEEEEECSSCEEEEEESS--SEEEEEECCCSSCCHHHHHHHHHHHHHHTT----CCCTTBCCEEEEEC-SSSCE
T ss_pred ccceEEEeEecCCCCeEEEEEEEC--CEEEEEEEecCCCCHHHHHHHHHHHHHHHh----CCCCCEEEEEEEEc-cCcEE
Confidence 367999999999999999999974 3689998876432 233578899999987 67999999999875 45578
Q ss_pred EEEEecCCCCHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccceeecC
Q 001384 882 LVYEYMEGGSLEDIISD-RTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARVVSA 960 (1088)
Q Consensus 882 lv~e~~~~gsL~~~l~~-~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~~~ 960 (1088)
+||||+++++|.+++.. ...+++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++....
T Consensus 108 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~DFg~a~~~~~ 184 (307)
T 3lb7_A 108 IVTQWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAK---NIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSR 184 (307)
T ss_dssp EEEECCSSCBHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCSSSEEECTTSCEEECCCCSSCC---
T ss_pred EEEecCCCCcHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhC---CEeeCCCChhhEEEcCCCCEEEccCCCceeccc
Confidence 99999999999999974 45799999999999999999999999 999999999999999999999999999986543
Q ss_pred C-CCcccccccccccccCccccC---CCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCCCCCcccc
Q 001384 961 G-DSHVSTTIAGTVGYVAPEYGQ---TWQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRHGPGRAVI 1036 (1088)
Q Consensus 961 ~-~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1036 (1088)
. .........||+.|+|||++. ...++.++||||||+++|||++|+.||................... ...
T Consensus 185 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~elltg~~Pf~~~~~~~~~~~~~~~~~~~-~~~---- 259 (307)
T 3lb7_A 185 WSGSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQIIFMVGRGYAS-PDL---- 259 (307)
T ss_dssp ---------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHHHHTCCC-CCS----
T ss_pred ccccccccCCCCCcceECcceeeccCCCCCCchhhHHHHHHHHHHHHhCCCCCccCCcHHHHHHHHhcCCCC-cch----
Confidence 1 222334457999999999875 6678999999999999999999999998654321111111110000 000
Q ss_pred chhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhhCCC
Q 001384 1037 PVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKILPH 1086 (1088)
Q Consensus 1037 ~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i~~~ 1086 (1088)
. .....++..+.+++.+|++.||++||++.||++.|+.+...
T Consensus 260 ~--------~~~~~~~~~l~~li~~~l~~~p~~RPs~~~il~~l~~l~~~ 301 (307)
T 3lb7_A 260 S--------KLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQHS 301 (307)
T ss_dssp T--------TSCSSSCHHHHHHHHHHSCSSSTTSCCHHHHHHHHHHHHTT
T ss_pred h--------hhhcCCcHHHHHHHHHHhhCChhhCcCHHHHHHHHHHHHhh
Confidence 0 00122346788999999999999999999999999988543
No 118
>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*
Probab=100.00 E-value=2e-38 Score=359.03 Aligned_cols=260 Identities=20% Similarity=0.280 Sum_probs=209.1
Q ss_pred cCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeEEE
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGLEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEKIL 882 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~~l 882 (1088)
.++|++.+.||+|+||.||+|++. +++.||||++.... ....+..|+++++++. +||||+++++++..+...++
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~---~h~~i~~~~~~~~~~~~~~l 82 (330)
T 2izr_A 8 GPNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKS--RAPQLHLEYRFYKQLG---SGDGIPQVYYFGPCGKYNAM 82 (330)
T ss_dssp TTTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTC--SSCCHHHHHHHHHHHC---SCTTSCCEEEEEEETTEEEE
T ss_pred cCCeEEEEEeeccCCceEEEEEECCCCcEEEEEEecccc--chHHHHHHHHHHHHhh---CCCCCCEEEEEEecCCccEE
Confidence 467999999999999999999964 78999999987653 2345788999998732 79999999999999999999
Q ss_pred EEEecCCCCHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCC-----EEEeecccce
Q 001384 883 VYEYMEGGSLEDIISD-RTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGK-----ALVTDFGLAR 956 (1088)
Q Consensus 883 v~e~~~~gsL~~~l~~-~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~-----~kl~Dfg~a~ 956 (1088)
||||+ +++|.++++. ...+++.+++.++.|++.||+|||+. +|+||||||+||+++.++. +||+|||+++
T Consensus 83 v~e~~-~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~iiHrDlkp~Nill~~~~~~~~~~~kl~DFg~a~ 158 (330)
T 2izr_A 83 VLELL-GPSLEDLFDLCDRTFSLKTVLMIAIQLISRMEYVHSK---NLIYRDVKPENFLIGRPGNKTQQVIHIIDFALAK 158 (330)
T ss_dssp EEECC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECCGGGTCTTSEEECCCTTCE
T ss_pred EEEeC-CCCHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHeeeccCCCCCCceEEEEEcccce
Confidence 99999 8999999986 46799999999999999999999999 9999999999999998887 9999999998
Q ss_pred eecCCCCc------ccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCch-hHHHHHHhhhccCCC
Q 001384 957 VVSAGDSH------VSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEE-CLVEWGRRVMGYGRH 1029 (1088)
Q Consensus 957 ~~~~~~~~------~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~-~~~~~~~~~~~~~~~ 1029 (1088)
.+...... ......||+.|+|||++.+..++.++||||||+++|||++|+.||.+... ...+...........
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~Pf~~~~~~~~~~~~~~i~~~~~~ 238 (330)
T 2izr_A 159 EYIDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRA 238 (330)
T ss_dssp ESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCSSHHHHHHHHHHHHHH
T ss_pred eeecCCCCccccccccCCcCCCccccChHHHcCCCCCchhHHHHHHHHHHHHhcCCCCccccccccHHHHHHHHHhhhcc
Confidence 76543321 12456799999999999999999999999999999999999999987532 121111111100000
Q ss_pred CCCccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhhCC
Q 001384 1030 GPGRAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKILP 1085 (1088)
Q Consensus 1030 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i~~ 1085 (1088)
.. .... ....+ ++.+++.+|++.||.+||++++|++.|+++.+
T Consensus 239 ~~-----~~~~-------~~~~p-~~~~li~~~l~~~p~~RP~~~~l~~~l~~~~~ 281 (330)
T 2izr_A 239 TP-----IEVL-------CENFP-EMATYLRYVRRLDFFEKPDYDYLRKLFTDLFD 281 (330)
T ss_dssp SC-----HHHH-------TTTCH-HHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHH
T ss_pred CC-----HHHH-------hccCh-HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHH
Confidence 00 0000 01122 78899999999999999999999999998753
No 119
>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=2.1e-38 Score=361.23 Aligned_cols=262 Identities=26% Similarity=0.369 Sum_probs=209.3
Q ss_pred HcCCCCccceecccCceEEEEEEe------CCCcEEEEEEccccC-ccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEe
Q 001384 803 ATGKFSEDRIIGKGGFGTVYRGVL------PDGREVAVKKLQREG-LEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCL 875 (1088)
Q Consensus 803 ~~~~~~~~~~LG~G~~g~Vy~~~~------~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~ 875 (1088)
..++|++.+.||+|+||.||+|++ .+++.||||++.... ....+.+.+|+.++.++. .||||+++++++.
T Consensus 43 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~---~hp~iv~~~~~~~ 119 (344)
T 1rjb_A 43 PRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLG---SHENIVNLLGACT 119 (344)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHC---CCTTBCCEEEEEC
T ss_pred CHHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHHHhhc---CCCCeeeEEEEEe
Confidence 346799999999999999999996 245689999997643 233467899999998732 7999999999999
Q ss_pred cCCeEEEEEEecCCCCHHHHHhhcC-----------------------CCCHHHHHHHHHHHHHHHHHHHhcCCCCeEec
Q 001384 876 DGSEKILVYEYMEGGSLEDIISDRT-----------------------RLTWRRRLDIAIDVARALVFLHHECYPPIVHR 932 (1088)
Q Consensus 876 ~~~~~~lv~e~~~~gsL~~~l~~~~-----------------------~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~ 932 (1088)
.++..++||||+++|+|.+++.... .+++.+++.++.|++.||+|||++ +|+||
T Consensus 120 ~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~ 196 (344)
T 1rjb_A 120 LSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFK---SCVHR 196 (344)
T ss_dssp SSSSCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHT---TEEET
T ss_pred eCCccEEEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHHhC---CcccC
Confidence 9999999999999999999997653 279999999999999999999999 99999
Q ss_pred CCCCCCEEEcCCCCEEEeecccceeecCCCCc-ccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHh-CCcCCC
Q 001384 933 DVKASNVLLDKEGKALVTDFGLARVVSAGDSH-VSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELAT-GRRALE 1010 (1088)
Q Consensus 933 DLkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~ellt-g~~p~~ 1010 (1088)
||||+||+++.++.+||+|||++......... ......+|+.|+|||.+.+..++.++||||||+++|||+| |..||.
T Consensus 197 Dikp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~ 276 (344)
T 1rjb_A 197 DLAARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYP 276 (344)
T ss_dssp TCSGGGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSST
T ss_pred CCChhhEEEcCCCcEEeCCCccCcccccCccceeccCccCccCccCHHHhccCCCChhHhHHHHHHHHHHHHcCCCCCcc
Confidence 99999999999999999999999876543322 2334567889999999888899999999999999999998 999998
Q ss_pred CCchhHHHHHHhhhccCCCCCCccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhhCCCC
Q 001384 1011 GGEECLVEWGRRVMGYGRHGPGRAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKILPHC 1087 (1088)
Q Consensus 1011 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i~~~~ 1087 (1088)
+........ ..... .. ....+...+.++.+++.+|++.||.+||++.|+++.|+.++..+
T Consensus 277 ~~~~~~~~~-~~~~~-~~---------------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~~ 336 (344)
T 1rjb_A 277 GIPVDANFY-KLIQN-GF---------------KMDQPFYATEEIYIIMQSCWAFDSRKRPSFPNLTSFLGCQLADA 336 (344)
T ss_dssp TCCCSHHHH-HHHHT-TC---------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC---
T ss_pred cCCcHHHHH-HHHhc-CC---------------CCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHHHH
Confidence 754321111 11110 00 00112223467888999999999999999999999999998754
No 120
>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*
Probab=100.00 E-value=5.5e-38 Score=354.44 Aligned_cols=247 Identities=25% Similarity=0.340 Sum_probs=196.3
Q ss_pred CCCCccceecccCceEEEEEEe----CCCcEEEEEEccccCc----cchHHHHHHHHHHhCCCCCCCCCceeEEeeEEec
Q 001384 805 GKFSEDRIIGKGGFGTVYRGVL----PDGREVAVKKLQREGL----EGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLD 876 (1088)
Q Consensus 805 ~~~~~~~~LG~G~~g~Vy~~~~----~~~~~vavK~~~~~~~----~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~ 876 (1088)
++|++.+.||+|+||.||+|+. .+++.||+|++.+... .....+.+|+++++. ++||||+++++++..
T Consensus 17 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~----l~hp~iv~~~~~~~~ 92 (327)
T 3a62_A 17 ECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEE----VKHPFIVDLIYAFQT 92 (327)
T ss_dssp GGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHH----CCCTTBCCEEEEEEC
T ss_pred HHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHh----CCCCCccceeEEEEc
Confidence 5789999999999999999997 4689999999986532 223457789999987 679999999999999
Q ss_pred CCeEEEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccce
Q 001384 877 GSEKILVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLAR 956 (1088)
Q Consensus 877 ~~~~~lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~ 956 (1088)
++..|+||||+++|+|.+++.....+++.+++.++.||+.||+|||++ +|+||||||+||+++.++.+||+|||+++
T Consensus 93 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~al~~lH~~---~ivH~Dlkp~Nill~~~~~~kl~Dfg~~~ 169 (327)
T 3a62_A 93 GGKLYLILEYLSGGELFMQLEREGIFMEDTACFYLAEISMALGHLHQK---GIIYRDLKPENIMLNHQGHVKLTDFGLCK 169 (327)
T ss_dssp SSCEEEEEECCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCTTTEEECTTSCEEECCCSCC-
T ss_pred CCEEEEEEeCCCCCcHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhC---CEEcccCCHHHeEECCCCcEEEEeCCccc
Confidence 999999999999999999999888899999999999999999999999 99999999999999999999999999997
Q ss_pred eecCCCCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCCCCCcccc
Q 001384 957 VVSAGDSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRHGPGRAVI 1036 (1088)
Q Consensus 957 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1036 (1088)
...... .......||+.|+|||++.+..++.++||||+|+++|||++|+.||.+..... ....+.....
T Consensus 170 ~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~--~~~~i~~~~~-------- 238 (327)
T 3a62_A 170 ESIHDG-TVTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGENRKK--TIDKILKCKL-------- 238 (327)
T ss_dssp ----------CTTSSCCTTSCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH--HHHHHHHTCC--------
T ss_pred ccccCC-ccccccCCCcCccCHhhCcCCCCCCcccchhHHHHHHHHHHCCCCCCCCCHHH--HHHHHHhCCC--------
Confidence 643221 22344679999999999998899999999999999999999999998764421 1111211000
Q ss_pred chhhcCCCccccHHHHHHHHHHHhhhcccCCCCCC-----CHHHHHH
Q 001384 1037 PVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARP-----NVKEVLA 1078 (1088)
Q Consensus 1037 ~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RP-----s~~eil~ 1078 (1088)
..+......+.+++.+|++.||++|| ++.|+++
T Consensus 239 ---------~~p~~~~~~~~~li~~~L~~dp~~R~~~~~~~~~e~l~ 276 (327)
T 3a62_A 239 ---------NLPPYLTQEARDLLKKLLKRNAASRLGAGPGDAGEVQA 276 (327)
T ss_dssp ---------CCCTTSCHHHHHHHHHHSCSCGGGSTTSSTTTHHHHHH
T ss_pred ---------CCCCCCCHHHHHHHHHHHhcCHhhccCCCCCCHHHHHc
Confidence 01122345788899999999999999 6777764
No 121
>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*
Probab=100.00 E-value=1.9e-38 Score=352.17 Aligned_cols=252 Identities=24% Similarity=0.388 Sum_probs=204.7
Q ss_pred cCCCCccceecccCceEEEEEEeCC-C-------cEEEEEEccccCccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEe
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLPD-G-------REVAVKKLQREGLEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCL 875 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~~-~-------~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~ 875 (1088)
.++|++.+.||+|+||+||+|+++. + +.||+|++........+.+.+|++++++ ++||||+++++++.
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~----l~h~~iv~~~~~~~ 82 (289)
T 4fvq_A 7 NEDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSK----LSHKHLVLNYGVCV 82 (289)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGGGGHHHHHHHHHHHHT----SCCTTBCCEEEEEC
T ss_pred hhHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhcccccHHHHHHHHHHHHHHHh----CCCCCEeEEEEEEE
Confidence 3578899999999999999999653 3 4799999987666666789999999997 67999999999999
Q ss_pred cCCeEEEEEEecCCCCHHHHHhhcCC-CCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCC--------
Q 001384 876 DGSEKILVYEYMEGGSLEDIISDRTR-LTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGK-------- 946 (1088)
Q Consensus 876 ~~~~~~lv~e~~~~gsL~~~l~~~~~-l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~-------- 946 (1088)
+++..++||||+++|+|.++++.... +++..++.++.|++.||+|||++ +|+||||||+||+++.++.
T Consensus 83 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~~~~ 159 (289)
T 4fvq_A 83 CGDENILVQEFVKFGSLDTYLKKNKNCINILWKLEVAKQLAAAMHFLEEN---TLIHGNVCAKNILLIREEDRKTGNPPF 159 (289)
T ss_dssp CTTCCEEEEECCTTCBHHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEEECCBGGGTBCCE
T ss_pred eCCCCEEEEECCCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHhhC---CeECCCcCcceEEEecCCcccccccce
Confidence 99999999999999999999987654 99999999999999999999999 9999999999999998887
Q ss_pred EEEeecccceeecCCCCcccccccccccccCccccCC-CCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhc
Q 001384 947 ALVTDFGLARVVSAGDSHVSTTIAGTVGYVAPEYGQT-WQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMG 1025 (1088)
Q Consensus 947 ~kl~Dfg~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~ 1025 (1088)
+||+|||.+..... .....++..|+|||++.+ ..++.++||||+|+++|||++|+.|+...............
T Consensus 160 ~kl~Dfg~~~~~~~-----~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~~~~~~~~~~~~- 233 (289)
T 4fvq_A 160 IKLSDPGISITVLP-----KDILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPLSALDSQRKLQFYED- 233 (289)
T ss_dssp EEECCCCSCTTTSC-----HHHHHHTTTTSCHHHHHCGGGCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHT-
T ss_pred eeeccCcccccccC-----ccccCCcCcccCHHHhCCCCCCCchhHHHHHHHHHHHHHcCCCCCccccchHHHHHHhhc-
Confidence 99999999865421 233467889999998877 77999999999999999999966555443321111111110
Q ss_pred cCCCCCCccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhhCCC
Q 001384 1026 YGRHGPGRAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKILPH 1086 (1088)
Q Consensus 1026 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i~~~ 1086 (1088)
... . +.....++.+++.+|++.||++||+++|+++.|++++..
T Consensus 234 ~~~-------~-----------~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~l~~p 276 (289)
T 4fvq_A 234 RHQ-------L-----------PAPKAAELANLINNCMDYEPDHRPSFRAIIRDLNSLFTP 276 (289)
T ss_dssp TCC-------C-----------CCCSSCTTHHHHHHHSCSSGGGSCCHHHHHHHHHTCC--
T ss_pred cCC-------C-----------CCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhcCC
Confidence 000 0 001123577899999999999999999999999999754
No 122
>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A
Probab=100.00 E-value=1e-37 Score=346.00 Aligned_cols=265 Identities=23% Similarity=0.282 Sum_probs=200.6
Q ss_pred CCCCccceecccCceEEEEEEeCCCcEEEEEEccccCcc--chHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeEEE
Q 001384 805 GKFSEDRIIGKGGFGTVYRGVLPDGREVAVKKLQREGLE--GEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEKIL 882 (1088)
Q Consensus 805 ~~~~~~~~LG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~--~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~~l 882 (1088)
++|++.+.||+|+||+||+|++.+|+.||||++...... ....+.+|++++++ ++||||+++++++.+++..++
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~----l~h~~iv~~~~~~~~~~~~~l 77 (288)
T 1ob3_A 2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKE----LKHSNIVKLYDVIHTKKRLVL 77 (288)
T ss_dssp CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGG----CCCTTBCCEEEEEECSSCEEE
T ss_pred ccchhhhhcccCCCEEEEEEEcCCCCEEEEEEEeccccccccchhHHHHHHHHHh----cCCCCEeeeeeEEccCCeEEE
Confidence 578999999999999999999988999999999765322 23678899999987 679999999999999999999
Q ss_pred EEEecCCCCHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccceeecCC
Q 001384 883 VYEYMEGGSLEDIISDR-TRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARVVSAG 961 (1088)
Q Consensus 883 v~e~~~~gsL~~~l~~~-~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~~~~ 961 (1088)
||||+++ +|.+++... ..+++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++.....
T Consensus 78 v~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~ 153 (288)
T 1ob3_A 78 VFEHLDQ-DLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCHDR---RVLHRDLKPQNLLINREGELKIADFGLARAFGIP 153 (288)
T ss_dssp EEECCSE-EHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC-
T ss_pred EEEecCC-CHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCCEEEeECccccccCcc
Confidence 9999986 999998764 5799999999999999999999999 9999999999999999999999999999765432
Q ss_pred CCcccccccccccccCccccCC-CCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHH-HHHHhhhccCCCCCCccc--c-
Q 001384 962 DSHVSTTIAGTVGYVAPEYGQT-WQATTKGDVYSFGVLAMELATGRRALEGGEECLV-EWGRRVMGYGRHGPGRAV--I- 1036 (1088)
Q Consensus 962 ~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~- 1036 (1088)
. .......+|+.|+|||++.+ ..++.++||||+||++|||++|+.||.+...... .................. .
T Consensus 154 ~-~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (288)
T 1ob3_A 154 V-RKYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKNWPNVTELP 232 (288)
T ss_dssp ---------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGST
T ss_pred c-cccccccccccccCchheeCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHCCCChhhchhhhccc
Confidence 1 12234568999999998765 4689999999999999999999999987654211 111111100000000000 0
Q ss_pred --chhhcC----CCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1037 --PVVLLG----SGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1037 --~~~~~~----~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
+..... ...........++.+++.+|++.||++||+++|+++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 280 (288)
T 1ob3_A 233 KYDPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALE 280 (288)
T ss_dssp TCCTTCCCCCCCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred ccccccccccCccHHHHhhhcCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence 000000 000001123457789999999999999999999975
No 123
>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}
Probab=100.00 E-value=2.2e-37 Score=348.72 Aligned_cols=270 Identities=23% Similarity=0.252 Sum_probs=211.1
Q ss_pred CCCCccceecccCceEEEEEEeC-CCcEEEEEEccccC-ccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCC--eE
Q 001384 805 GKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREG-LEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGS--EK 880 (1088)
Q Consensus 805 ~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~--~~ 880 (1088)
++|++.+.||+|+||+||+|++. +++.||||++.... ....+.+.+|++++++ ++||||+++++++.... ..
T Consensus 9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~----l~h~~iv~~~~~~~~~~~~~~ 84 (319)
T 4euu_A 9 HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKK----LNHKNIVKLFAIEEETTTRHK 84 (319)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHH----CCCTTBCCEEEEEECTTTCCE
T ss_pred CCEEEEEEecCCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHh----cCCCCcceEEEEeecCCCceE
Confidence 57899999999999999999976 58999999998643 2334677899999997 67999999999988765 78
Q ss_pred EEEEEecCCCCHHHHHhhcCC---CCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEE----cCCCCEEEeecc
Q 001384 881 ILVYEYMEGGSLEDIISDRTR---LTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLL----DKEGKALVTDFG 953 (1088)
Q Consensus 881 ~lv~e~~~~gsL~~~l~~~~~---l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll----~~~~~~kl~Dfg 953 (1088)
++||||+++|+|.++++.... +++.+++.++.|++.||+|||++ +|+||||||+||++ +.++.+||+|||
T Consensus 85 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~kL~Dfg 161 (319)
T 4euu_A 85 VLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLREN---GIVHRNIKPGNIMRVIGEDGQSVYKLTDFG 161 (319)
T ss_dssp EEEEECCTTCBHHHHHHSGGGTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEECTTSCEEEEECCCT
T ss_pred EEEEeCCCCCCHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCCHHHEEEeccCCCCceEEEccCC
Confidence 999999999999999986543 99999999999999999999999 99999999999999 788889999999
Q ss_pred cceeecCCCCcccccccccccccCccccC--------CCCCCcchhHHHHHHHHHHHHhCCcCCCCCch--hHHHHHHhh
Q 001384 954 LARVVSAGDSHVSTTIAGTVGYVAPEYGQ--------TWQATTKGDVYSFGVLAMELATGRRALEGGEE--CLVEWGRRV 1023 (1088)
Q Consensus 954 ~a~~~~~~~~~~~~~~~gt~~y~aPE~~~--------~~~~~~~~DvwslG~~l~elltg~~p~~~~~~--~~~~~~~~~ 1023 (1088)
+++...... ......||..|+|||++. +..++.++||||+||++|||++|+.||..... ...+.....
T Consensus 162 ~a~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~ 239 (319)
T 4euu_A 162 AARELEDDE--QFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKI 239 (319)
T ss_dssp TCEECCTTC--CBCCCCSCGGGCCHHHHHHHTSCCCCCCCBCTTHHHHHHHHHHHHHHHSSCSEECTTCGGGCHHHHHHH
T ss_pred CceecCCCC--ceeecccCCCccCHHHhhhccccccccCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCccchhHHHHHHH
Confidence 998765432 233457899999999875 56889999999999999999999999975322 111222222
Q ss_pred hccCCCCCCccc---------cchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhhC
Q 001384 1024 MGYGRHGPGRAV---------IPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKIL 1084 (1088)
Q Consensus 1024 ~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i~ 1084 (1088)
............ .... ..............+.+++.+|++.||++||+++|+++...+..
T Consensus 240 ~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~ll~~~L~~dP~~R~s~~ell~h~~d~~ 308 (319)
T 4euu_A 240 ITGKPSGAISGVQKAENGPIDWSGD-MPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDIL 308 (319)
T ss_dssp HHHCCTTCCEEEECSTTCCEEEESS-CCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHHT
T ss_pred hcCCCcccchhhhcccCCccccCcc-CCcccccchhHHHHhHHHHHHhccCChhhhccHHHhhhccHHHh
Confidence 111100000000 0000 00111234667788999999999999999999999999887654
No 124
>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*
Probab=100.00 E-value=2.8e-37 Score=341.81 Aligned_cols=251 Identities=24% Similarity=0.319 Sum_probs=206.9
Q ss_pred cCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCcc--chHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeE
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGLE--GEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEK 880 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~--~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~ 880 (1088)
.++|++.+.||+|+||.||+|.++ +++.||+|++...... ..+.+.+|++++++ ++||||+++++++.++...
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~----l~h~~i~~~~~~~~~~~~~ 80 (284)
T 3kk8_A 5 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRK----LQHPNIVRLHDSIQEESFH 80 (284)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHH----CCCTTBCCEEEEEECSSEE
T ss_pred hhhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHH----cCCCCcCeEEEEEEcCCEE
Confidence 578999999999999999999976 6899999999765322 23567889999987 6799999999999999999
Q ss_pred EEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCC---EEEeeccccee
Q 001384 881 ILVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGK---ALVTDFGLARV 957 (1088)
Q Consensus 881 ~lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~---~kl~Dfg~a~~ 957 (1088)
++||||+++++|.+++.....+++.+++.++.|++.||+|||++ +|+||||||+||+++.++. +||+|||.+..
T Consensus 81 ~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~~~~kl~Dfg~~~~ 157 (284)
T 3kk8_A 81 YLVFDLVTGGELFEDIVAREFYSEADASHCIQQILESIAYCHSN---GIVHRNLKPENLLLASKAKGAAVKLADFGLAIE 157 (284)
T ss_dssp EEEECCCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEESSSSTTCCEEECCCTTCEE
T ss_pred EEEEecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CcCcCCCCHHHEEEecCCCCCcEEEeeceeeEE
Confidence 99999999999999998888899999999999999999999999 9999999999999987665 99999999987
Q ss_pred ecCCCCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCCCCCccccc
Q 001384 958 VSAGDSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRHGPGRAVIP 1037 (1088)
Q Consensus 958 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1037 (1088)
..... ......||+.|+|||.+.+..++.++||||+|+++|+|++|+.||.+..............+....
T Consensus 158 ~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~------- 228 (284)
T 3kk8_A 158 VNDSE--AWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLYAQIKAGAYDYPS------- 228 (284)
T ss_dssp CCSSC--BCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCT-------
T ss_pred cccCc--cccCCCCCcCCcCchhhcCCCCCcccchHHHHHHHHHHHHCCCCCCCCchhHHHHHHHhccccCCc-------
Confidence 65322 234467899999999999989999999999999999999999999876542211111111000000
Q ss_pred hhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1038 VVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1038 ~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
+.......++.+++.+|++.||++||+++|+++
T Consensus 229 --------~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~ 261 (284)
T 3kk8_A 229 --------PEWDTVTPEAKSLIDSMLTVNPKKRITADQALK 261 (284)
T ss_dssp --------TTTTTSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred --------hhhcccCHHHHHHHHHHcccChhhCCCHHHHhc
Confidence 001122356888999999999999999999976
No 125
>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*
Probab=100.00 E-value=1.4e-37 Score=342.91 Aligned_cols=255 Identities=24% Similarity=0.312 Sum_probs=210.2
Q ss_pred cCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeEEE
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGLEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEKIL 882 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~~l 882 (1088)
.++|++.+.||+|+||.||+|.++ ++..||+|++........+.+.+|++++++ ++||||+++++++.++...++
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~E~~~l~~----l~h~~i~~~~~~~~~~~~~~l 83 (277)
T 3f3z_A 8 NQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKS----LDHPNIIRLYETFEDNTDIYL 83 (277)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHT----CCCTTBCCEEEEEECSSEEEE
T ss_pred hhhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccchHHHHHHHHHHHHh----CCCCCEeeEEEEEecCCeEEE
Confidence 457999999999999999999976 577999999987656667789999999997 679999999999999999999
Q ss_pred EEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEE---cCCCCEEEeecccceeec
Q 001384 883 VYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLL---DKEGKALVTDFGLARVVS 959 (1088)
Q Consensus 883 v~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll---~~~~~~kl~Dfg~a~~~~ 959 (1088)
||||+++++|.+++.....+++.+++.++.|++.||+|||++ +|+||||||+||++ +.++.+||+|||++....
T Consensus 84 v~e~~~~~~L~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~~~~l~Dfg~~~~~~ 160 (277)
T 3f3z_A 84 VMELCTGGELFERVVHKRVFRESDAARIMKDVLSAVAYCHKL---NVAHRDLKPENFLFLTDSPDSPLKLIDFGLAARFK 160 (277)
T ss_dssp EEECCCSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESSSSTTCCEEECCCTTCEECC
T ss_pred EEeccCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCCHHHEEEecCCCCCcEEEEecccceecc
Confidence 999999999999998888899999999999999999999999 99999999999999 788999999999998765
Q ss_pred CCCCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCCCCCccccchh
Q 001384 960 AGDSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRHGPGRAVIPVV 1039 (1088)
Q Consensus 960 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1039 (1088)
... ......+|+.|+|||.+.+ .++.++||||+|+++|||++|+.||............... .. . .+..
T Consensus 161 ~~~--~~~~~~~t~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~--~~-~-----~~~~ 229 (277)
T 3f3z_A 161 PGK--MMRTKVGTPYYVSPQVLEG-LYGPECDEWSAGVMMYVLLCGYPPFSAPTDSEVMLKIREG--TF-T-----FPEK 229 (277)
T ss_dssp TTS--CBCCCCSCTTTCCHHHHTT-CBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHC--CC-C-----CCHH
T ss_pred Ccc--chhccCCCCCccChHHhcc-cCCchhhehhHHHHHHHHHHCCCCCCCCCHHHHHHHHHhC--CC-C-----CCch
Confidence 432 2344578999999998876 4899999999999999999999999876542211111110 00 0 0000
Q ss_pred hcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH--HHHhh
Q 001384 1040 LLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA--MLIKI 1083 (1088)
Q Consensus 1040 ~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~--~L~~i 1083 (1088)
. .......+.+++.+|++.||++||++.|+++ .+++.
T Consensus 230 ~-------~~~~~~~~~~li~~~l~~dp~~R~s~~~~l~h~~~~~~ 268 (277)
T 3f3z_A 230 D-------WLNVSPQAESLIRRLLTKSPKQRITSLQALEHEWFEKQ 268 (277)
T ss_dssp H-------HTTSCHHHHHHHHHHTCSSTTTSCCHHHHTTSHHHHHH
T ss_pred h-------hhcCCHHHHHHHHHHccCChhhCcCHHHHhcCHHHhcc
Confidence 0 0122457888999999999999999999985 44443
No 126
>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}
Probab=100.00 E-value=3.2e-38 Score=365.20 Aligned_cols=260 Identities=24% Similarity=0.291 Sum_probs=206.9
Q ss_pred HHHHHHHcCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCc---cchHHHHHHHHHHhCCCCCCCCCceeEEee
Q 001384 797 YSDILKATGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGL---EGEREFRAEMEVLSGNGFGWPHPNLVTLYG 872 (1088)
Q Consensus 797 ~~~~~~~~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~~~~~l~h~niv~l~~ 872 (1088)
+.+.....++|++.+.||+|+||+||+|+.+ +|+.||||++.+... .....+.+|..++.. ++||||+++++
T Consensus 53 ~~~~~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~----~~hp~Iv~l~~ 128 (412)
T 2vd5_A 53 LKEVRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVN----GDRRWITQLHF 128 (412)
T ss_dssp HHHHSCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHH----SCTTTBCCEEE
T ss_pred hhhccCChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHh----cCCCCeeeEEE
Confidence 3444445678999999999999999999976 689999999976422 122357889998886 57999999999
Q ss_pred EEecCCeEEEEEEecCCCCHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEee
Q 001384 873 WCLDGSEKILVYEYMEGGSLEDIISDR-TRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTD 951 (1088)
Q Consensus 873 ~~~~~~~~~lv~e~~~~gsL~~~l~~~-~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~D 951 (1088)
++.+++..|+||||+++|+|.+++++. ..+++..++.++.||+.||+|||++ +|+||||||+||+++.++++||+|
T Consensus 129 ~~~~~~~~~lVmE~~~gg~L~~~l~~~~~~l~~~~~~~~~~qi~~aL~~LH~~---giiHrDLKp~NILld~~g~vkL~D 205 (412)
T 2vd5_A 129 AFQDENYLYLVMEYYVGGDLLTLLSKFGERIPAEMARFYLAEIVMAIDSVHRL---GYVHRDIKPDNILLDRCGHIRLAD 205 (412)
T ss_dssp EEECSSEEEEEECCCCSCBHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECC
T ss_pred EEeeCCEEEEEEcCCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecccCHHHeeecCCCCEEEee
Confidence 999999999999999999999999875 4799999999999999999999999 999999999999999999999999
Q ss_pred cccceeecCCCCcccccccccccccCccccC-------CCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhh
Q 001384 952 FGLARVVSAGDSHVSTTIAGTVGYVAPEYGQ-------TWQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVM 1024 (1088)
Q Consensus 952 fg~a~~~~~~~~~~~~~~~gt~~y~aPE~~~-------~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~ 1024 (1088)
||+++.............+||+.|+|||++. ...++.++||||+||++|||++|+.||.+..... ....+.
T Consensus 206 FGla~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~--~~~~i~ 283 (412)
T 2vd5_A 206 FGSCLKLRADGTVRSLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQTPFYADSTAE--TYGKIV 283 (412)
T ss_dssp CTTCEECCTTSCEECSSCCSCGGGCCHHHHHHHHTCTTCSEECTHHHHHHHHHHHHHHHHSSCTTCCSSHHH--HHHHHH
T ss_pred chhheeccCCCccccceeccccCcCCHHHHhhcccCcCCCCCChHHhhhHHhHHHHHHHhCCCCCCCCCHHH--HHHHHH
Confidence 9999887654433344568999999999876 4578999999999999999999999998764421 111111
Q ss_pred ccCCCCCCccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCC---CCHHHHHH
Q 001384 1025 GYGRHGPGRAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNAR---PNVKEVLA 1078 (1088)
Q Consensus 1025 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~R---Ps~~eil~ 1078 (1088)
....... .+. .......++.+++.+|++ +|++| |+++||++
T Consensus 284 ~~~~~~~----~p~--------~~~~~s~~~~dli~~lL~-~p~~Rlgr~~~~ei~~ 327 (412)
T 2vd5_A 284 HYKEHLS----LPL--------VDEGVPEEARDFIQRLLC-PPETRLGRGGAGDFRT 327 (412)
T ss_dssp THHHHCC----CC------------CCCHHHHHHHHTTSS-CGGGCTTTTTHHHHHT
T ss_pred hcccCcC----CCc--------cccCCCHHHHHHHHHHcC-ChhhcCCCCCHHHHhc
Confidence 0000000 000 011233578889999999 99998 58888864
No 127
>2eue_A Carbon catabolite derepressing protein kinase; kinase domain; 2.20A {Saccharomyces cerevisiae} PDB: 3fam_A 3hyh_A 3dae_A 2fh9_A 3mn3_A
Probab=100.00 E-value=7.6e-38 Score=344.55 Aligned_cols=245 Identities=24% Similarity=0.352 Sum_probs=183.4
Q ss_pred CCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCc---cchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeE
Q 001384 805 GKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGL---EGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEK 880 (1088)
Q Consensus 805 ~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~ 880 (1088)
++|++.+.||+|+||.||+|++. +++.||+|++..... ...+.+.+|+++++. ++||||+++++++.+.+..
T Consensus 13 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~----l~h~~i~~~~~~~~~~~~~ 88 (275)
T 2eue_A 13 GNYQIVKTLGEGSFAKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRL----LRHPHIIKLYDVIKSKDEI 88 (275)
T ss_dssp CCBCCCC---------EEEEECTTTCCEEEEEEECSCC-----CHHHHHHHHHHHHH----CCCTTBCCEEEEEECSSCE
T ss_pred cceEEEEEEEcCCCEEEEEEEECCCCCEEEEEEEEhhhcchHHHHHHHHHHHHHHHh----CCCCCeEEEEEEEecCCeE
Confidence 57999999999999999999965 689999999976432 234678899999987 6799999999999999999
Q ss_pred EEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccceeecC
Q 001384 881 ILVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARVVSA 960 (1088)
Q Consensus 881 ~lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~~~ 960 (1088)
++||||+ +++|.+++.....+++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||++.....
T Consensus 89 ~lv~e~~-~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~ 164 (275)
T 2eue_A 89 IMVIEYA-GNELFDYIVQRDKMSEQEARRFFQQIISAVEYCHRH---KIVHRDLKPENLLLDEHLNVKIADFGLSNIMTD 164 (275)
T ss_dssp EEEEECC-CEEHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTSCEEECCSSCC-----
T ss_pred EEEehhc-CCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CCeeccCChHhEEECCCCCEEEeecccceeccC
Confidence 9999999 679999998888899999999999999999999999 999999999999999999999999999976543
Q ss_pred CCCcccccccccccccCccccCCCCC-CcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCCCCCccccchh
Q 001384 961 GDSHVSTTIAGTVGYVAPEYGQTWQA-TTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRHGPGRAVIPVV 1039 (1088)
Q Consensus 961 ~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1039 (1088)
.. ......||+.|+|||.+.+..+ +.++||||+|+++|||++|+.||........ .........
T Consensus 165 ~~--~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~--~~~~~~~~~----------- 229 (275)
T 2eue_A 165 GN--FLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESIPVL--FKNISNGVY----------- 229 (275)
T ss_dssp ------------CTTCCHHHHCC-----THHHHHHHHHHHHHHHHSSCSSCCSSHHHH--HHHHHHTCC-----------
T ss_pred cc--cccCCCCCcCcCCceeeeCCCCCCcccchHHHHHHHHHHHhCCCCCCCCCHHHH--HHHHHhCCC-----------
Confidence 22 2334568999999999887665 7899999999999999999999987543221 111110000
Q ss_pred hcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1040 LLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1040 ~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
..+......+.+++.+|++.||++||+++|+++
T Consensus 230 ------~~~~~~~~~~~~li~~~l~~dP~~Rps~~e~l~ 262 (275)
T 2eue_A 230 ------TLPKFLSPGAAGLIKRMLIVNPLNRISIHEIMQ 262 (275)
T ss_dssp ------CCCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred ------CCCccCCHHHHHHHHHHhhcCHhHCCCHHHHhh
Confidence 011223356888999999999999999999975
No 128
>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...
Probab=100.00 E-value=3.4e-38 Score=357.73 Aligned_cols=258 Identities=28% Similarity=0.412 Sum_probs=209.9
Q ss_pred cCCCCccceecccCceEEEEEEeC--------CCcEEEEEEccccCcc-chHHHHHHHHHHhCCCCCCCCCceeEEeeEE
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLP--------DGREVAVKKLQREGLE-GEREFRAEMEVLSGNGFGWPHPNLVTLYGWC 874 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~--------~~~~vavK~~~~~~~~-~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~ 874 (1088)
.++|++.+.||+|+||.||+|++. +++.||||++...... ..+.+.+|+++++++. +||||+++++++
T Consensus 34 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~---~hp~iv~~~~~~ 110 (334)
T 2pvf_A 34 RDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIG---KHKNIINLLGAC 110 (334)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHHHHHC---CCTTBCCEEEEE
T ss_pred HhHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHHHHhh---cCCCEeeEEEEE
Confidence 467899999999999999999863 4678999999865322 3356889999998732 799999999999
Q ss_pred ecCCeEEEEEEecCCCCHHHHHhhcC----------------CCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCC
Q 001384 875 LDGSEKILVYEYMEGGSLEDIISDRT----------------RLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASN 938 (1088)
Q Consensus 875 ~~~~~~~lv~e~~~~gsL~~~l~~~~----------------~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~N 938 (1088)
.+++..++||||+++|+|.+++.... .+++.+++.++.|++.||+|||+. +|+||||||+|
T Consensus 111 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~N 187 (334)
T 2pvf_A 111 TQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQ---KCIHRDLAARN 187 (334)
T ss_dssp CSSSCCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGG
T ss_pred ccCCceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCccce
Confidence 99999999999999999999997654 389999999999999999999999 99999999999
Q ss_pred EEEcCCCCEEEeecccceeecCCCCc-ccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHh-CCcCCCCCchhH
Q 001384 939 VLLDKEGKALVTDFGLARVVSAGDSH-VSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELAT-GRRALEGGEECL 1016 (1088)
Q Consensus 939 Ill~~~~~~kl~Dfg~a~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~ellt-g~~p~~~~~~~~ 1016 (1088)
|+++.++.+||+|||+++........ ......+++.|+|||++.+..++.++||||+|+++|||++ |+.||.+.....
T Consensus 188 Ill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~ 267 (334)
T 2pvf_A 188 VLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEE 267 (334)
T ss_dssp EEECTTCCEEECCCTTCEECTTTSSEECCSCCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCHHH
T ss_pred EEEcCCCCEEEccccccccccccccccccCCCCcccceeChHHhcCCCcChHHHHHHHHHHHHHHHhCCCCCcCcCCHHH
Confidence 99999999999999999876543322 2233456789999999888889999999999999999999 999998754321
Q ss_pred HHHHHhhhccCCCCCCccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhhCC
Q 001384 1017 VEWGRRVMGYGRHGPGRAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKILP 1085 (1088)
Q Consensus 1017 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i~~ 1085 (1088)
.......... ...+......+.+++.+|++.||.+||+++|+++.|++++.
T Consensus 268 --~~~~~~~~~~----------------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~l~~ 318 (334)
T 2pvf_A 268 --LFKLLKEGHR----------------MDKPANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRILT 318 (334)
T ss_dssp --HHHHHHHTCC----------------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred --HHHHHhcCCC----------------CCCCccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence 1111110000 01122334578889999999999999999999999999863
No 129
>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*
Probab=100.00 E-value=2.6e-38 Score=354.86 Aligned_cols=258 Identities=26% Similarity=0.442 Sum_probs=198.4
Q ss_pred cCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCccc---hHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCe
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGLEG---EREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSE 879 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~---~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~ 879 (1088)
.++|++.+.||+|+||.||+|++. +++.||||++....... ...+.+|++++.+ ++||||+++++++.....
T Consensus 11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~----l~hp~iv~~~~~~~~~~~ 86 (311)
T 3ork_A 11 SDRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAA----LNHPAIVAVYDTGEAETP 86 (311)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCC----CCCTTBCCEEEEEEEEET
T ss_pred cCcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHc----CCCCCcceEEEeeeccCC
Confidence 468999999999999999999974 78999999998653332 2467788887775 689999999999876543
Q ss_pred ----EEEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccc
Q 001384 880 ----KILVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLA 955 (1088)
Q Consensus 880 ----~~lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a 955 (1088)
.|+||||+++|+|.++++...++++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||++
T Consensus 87 ~~~~~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~a 163 (311)
T 3ork_A 87 AGPLPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQN---GIIHRDVKPANIMISATNAVKVMDFGIA 163 (311)
T ss_dssp TEEEEEEEEECCCEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEETTSCEEECCCSCC
T ss_pred CCcccEEEEecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CCCcCCCCHHHEEEcCCCCEEEeeccCc
Confidence 499999999999999999888899999999999999999999999 9999999999999999999999999999
Q ss_pred eeecCCCCc--ccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCCCCCc
Q 001384 956 RVVSAGDSH--VSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRHGPGR 1033 (1088)
Q Consensus 956 ~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 1033 (1088)
+........ ......||+.|+|||++.+..++.++||||+|+++|||++|+.||.+.......+..... ..
T Consensus 164 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~~~~~~~~~--~~----- 236 (311)
T 3ork_A 164 RAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVRE--DP----- 236 (311)
T ss_dssp ------------------CCTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHC--CC-----
T ss_pred ccccccccccccccccCcCcccCCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHhcC--CC-----
Confidence 876543221 233457899999999999989999999999999999999999999876543322222111 00
Q ss_pred cccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHH-HHHHHHhh
Q 001384 1034 AVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKE-VLAMLIKI 1083 (1088)
Q Consensus 1034 ~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~e-il~~L~~i 1083 (1088)
..+.. .....+.++.+++.+|++.||++||++.+ +.+.+.++
T Consensus 237 -~~~~~-------~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~~ 279 (311)
T 3ork_A 237 -IPPSA-------RHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRV 279 (311)
T ss_dssp -CCHHH-------HSTTCCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHH
T ss_pred -CCccc-------ccCCCCHHHHHHHHHHHhcCHhhChhhHHHHHHHHHHH
Confidence 00000 01123457889999999999999996555 45555554
No 130
>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*
Probab=100.00 E-value=8.2e-38 Score=343.40 Aligned_cols=250 Identities=22% Similarity=0.327 Sum_probs=204.7
Q ss_pred CCCCccceecccCceEEEEEEeCCCcEEEEEEccccCc--cchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecC--CeE
Q 001384 805 GKFSEDRIIGKGGFGTVYRGVLPDGREVAVKKLQREGL--EGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDG--SEK 880 (1088)
Q Consensus 805 ~~~~~~~~LG~G~~g~Vy~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~--~~~ 880 (1088)
++|++.+.||+|+||.||+|+++ ++.||||++..... ...+.+.+|++++++ ++||||+++++++.+. ...
T Consensus 10 ~~y~~~~~lg~G~~g~V~~~~~~-~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~----l~h~~iv~~~~~~~~~~~~~~ 84 (271)
T 3kmu_A 10 KQLNFLTKLNENHSGELWKGRWQ-GNDIVVKVLKVRDWSTRKSRDFNEECPRLRI----FSHPNVLPVLGACQSPPAPHP 84 (271)
T ss_dssp GGCEEEEEEEEETTEEEEEEEET-TEEEEEEEECCTTCCHHHHHHHHHHGGGGCC----CSCTTEECEEEEECTTTSSSC
T ss_pred HHhHHHHHhcCCCcceEEEEEEC-CeeEEEEEecccccCHHHHHHHHHHHHHHHh----cCCCchhheEEEEccCCCCCe
Confidence 46889999999999999999985 88999999986532 234578899998886 6799999999999887 788
Q ss_pred EEEEEecCCCCHHHHHhhcC--CCCHHHHHHHHHHHHHHHHHHHhcCCCC--eEecCCCCCCEEEcCCCCEEEeecccce
Q 001384 881 ILVYEYMEGGSLEDIISDRT--RLTWRRRLDIAIDVARALVFLHHECYPP--IVHRDVKASNVLLDKEGKALVTDFGLAR 956 (1088)
Q Consensus 881 ~lv~e~~~~gsL~~~l~~~~--~l~~~~~~~i~~qi~~~L~yLH~~~~~~--ivH~DLkp~NIll~~~~~~kl~Dfg~a~ 956 (1088)
++||||+++|+|.++++... .+++.+++.++.|++.||+|||++ + |+||||||+||+++.++.++++|||++.
T Consensus 85 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~~~i~H~dikp~Nil~~~~~~~~l~~~~~~~ 161 (271)
T 3kmu_A 85 TLITHWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLHTL---EPLIPRHALNSRSVMIDEDMTARISMADVKF 161 (271)
T ss_dssp EEEEECCTTCBHHHHHHSCSSCCCCHHHHHHHHHHHHHHHHHHTTS---SSCCTTCCCSGGGEEECTTSCEEEEGGGSCC
T ss_pred EeeecccCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhcC---CCceecCCCccceEEEcCCcceeEEecccee
Confidence 99999999999999998765 489999999999999999999998 7 9999999999999999999999998875
Q ss_pred eecCCCCcccccccccccccCccccCCCCCCc---chhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCCCCCc
Q 001384 957 VVSAGDSHVSTTIAGTVGYVAPEYGQTWQATT---KGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRHGPGR 1033 (1088)
Q Consensus 957 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~---~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 1033 (1088)
... .....+|+.|+|||.+.+..++. ++||||+|+++|||++|+.||.+............. ..
T Consensus 162 ~~~------~~~~~~t~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~--~~----- 228 (271)
T 3kmu_A 162 SFQ------SPGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPFADLSNMEIGMKVALE--GL----- 228 (271)
T ss_dssp TTS------CTTCBSCGGGSCHHHHHSCGGGSCHHHHHHHHHHHHHHHHHHCSCTTTTSCHHHHHHHHHHS--CC-----
T ss_pred eec------ccCccCCccccChhhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCccccChHHHHHHHHhc--CC-----
Confidence 432 22346789999999887655444 899999999999999999999876542221111111 00
Q ss_pred cccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhhCC
Q 001384 1034 AVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKILP 1085 (1088)
Q Consensus 1034 ~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i~~ 1085 (1088)
....+...+..+.+++.+|++.||++||+++|+++.|+++.+
T Consensus 229 ----------~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~L~~l~~ 270 (271)
T 3kmu_A 229 ----------RPTIPPGISPHVSKLMKICMNEDPAKRPKFDMIVPILEKMQD 270 (271)
T ss_dssp ----------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHCC
T ss_pred ----------CCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhc
Confidence 001122234578899999999999999999999999999875
No 131
>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*
Probab=100.00 E-value=2e-38 Score=356.39 Aligned_cols=260 Identities=27% Similarity=0.397 Sum_probs=212.0
Q ss_pred cCCCCccceecccCceEEEEEEe------CCCcEEEEEEccccCc-cchHHHHHHHHHHhCCCCCCCCCceeEEeeEEec
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVL------PDGREVAVKKLQREGL-EGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLD 876 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~------~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~ 876 (1088)
.++|++.+.||+|+||.||+|++ .+++.||||++..... ...+.+.+|++++.++. +||||+++++++.+
T Consensus 22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~---~h~~i~~~~~~~~~ 98 (313)
T 1t46_A 22 RNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLG---NHMNIVNLLGACTI 98 (313)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHC---CCTTBCCEEEEECS
T ss_pred hhhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHHhhcc---cCCCeeeEEEEEec
Confidence 35789999999999999999985 2467899999986543 23467889999998732 79999999999999
Q ss_pred CCeEEEEEEecCCCCHHHHHhhcC------------------CCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCC
Q 001384 877 GSEKILVYEYMEGGSLEDIISDRT------------------RLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASN 938 (1088)
Q Consensus 877 ~~~~~lv~e~~~~gsL~~~l~~~~------------------~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~N 938 (1088)
++..++||||+++|+|.+++.... .+++.+++.++.|++.||+|||++ +|+||||||+|
T Consensus 99 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~N 175 (313)
T 1t46_A 99 GGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASK---NCIHRDLAARN 175 (313)
T ss_dssp SSSCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGG
T ss_pred CCCcEEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCccce
Confidence 999999999999999999997654 389999999999999999999999 99999999999
Q ss_pred EEEcCCCCEEEeecccceeecCCCCc-ccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHh-CCcCCCCCchhH
Q 001384 939 VLLDKEGKALVTDFGLARVVSAGDSH-VSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELAT-GRRALEGGEECL 1016 (1088)
Q Consensus 939 Ill~~~~~~kl~Dfg~a~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~ellt-g~~p~~~~~~~~ 1016 (1088)
|+++.++.+||+|||+++........ ......+|+.|+|||.+.+..++.++||||+|+++|||++ |+.||.+.....
T Consensus 176 il~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~ 255 (313)
T 1t46_A 176 ILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDS 255 (313)
T ss_dssp EEEETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCSSH
T ss_pred EEEcCCCCEEEccccccccccccccceeccCCCCcceeeChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCCcccchh
Confidence 99999999999999999876543322 2334567889999999888899999999999999999999 999998754321
Q ss_pred HHHHHhhhccCCCCCCccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhhCCC
Q 001384 1017 VEWGRRVMGYGRHGPGRAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKILPH 1086 (1088)
Q Consensus 1017 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i~~~ 1086 (1088)
..+........ ...+...+..+.+++.+|++.||.+||+++|+++.|+++++.
T Consensus 256 ~~~~~~~~~~~-----------------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~ 308 (313)
T 1t46_A 256 KFYKMIKEGFR-----------------MLSPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQLIEKQISE 308 (313)
T ss_dssp HHHHHHHHTCC-----------------CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCC-----------------CCCcccCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHHH
Confidence 11111111000 001122346788899999999999999999999999998653
No 132
>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}
Probab=100.00 E-value=1.4e-37 Score=356.99 Aligned_cols=245 Identities=25% Similarity=0.337 Sum_probs=197.8
Q ss_pred cceecccCceEEEEEEeC-CCcEEEEEEccccCccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeEEEEEEecC
Q 001384 810 DRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGLEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEKILVYEYME 888 (1088)
Q Consensus 810 ~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~~lv~e~~~ 888 (1088)
.+.||+|+||.||+|++. +|+.||+|++........+.+.+|++++.+ ++||||+++++++.+.+..++||||++
T Consensus 94 ~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~----l~hpnIv~~~~~~~~~~~~~lv~E~~~ 169 (373)
T 2x4f_A 94 TEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQ----LDHANLIQLYDAFESKNDIVLVMEYVD 169 (373)
T ss_dssp EEECC-----CEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTT----CCCTTBCCEEEEEECSSEEEEEEECCT
T ss_pred ceEEecCcCEEEEEEEEcCCCcEEEEEEEcccccccHHHHHHHHHHHHh----CCCCCCCeEEEEEEECCEEEEEEeCCC
Confidence 568999999999999975 689999999987655566789999999987 679999999999999999999999999
Q ss_pred CCCHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEE--cCCCCEEEeecccceeecCCCCcc
Q 001384 889 GGSLEDIISDR-TRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLL--DKEGKALVTDFGLARVVSAGDSHV 965 (1088)
Q Consensus 889 ~gsL~~~l~~~-~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll--~~~~~~kl~Dfg~a~~~~~~~~~~ 965 (1088)
+|+|.+++... ..+++.+++.++.||+.||+|||+. +|+||||||+||++ +.++.+||+|||+++.+.... .
T Consensus 170 ~~~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~~~~--~ 244 (373)
T 2x4f_A 170 GGELFDRIIDESYNLTELDTILFMKQICEGIRHMHQM---YILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPRE--K 244 (373)
T ss_dssp TCEEHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEEETTTTEEEECCCSSCEECCTTC--B
T ss_pred CCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CcccccCCHHHEEEecCCCCcEEEEeCCCceecCCcc--c
Confidence 99999988654 4699999999999999999999999 99999999999999 567889999999998775432 2
Q ss_pred cccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCCCCCccccchhhcCCCc
Q 001384 966 STTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRHGPGRAVIPVVLLGSGL 1045 (1088)
Q Consensus 966 ~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1045 (1088)
.....||+.|+|||++....++.++|||||||++|||++|+.||.+..+... ...+........ +.
T Consensus 245 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~--~~~i~~~~~~~~-----~~------- 310 (373)
T 2x4f_A 245 LKVNFGTPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSGLSPFLGDNDAET--LNNILACRWDLE-----DE------- 310 (373)
T ss_dssp CCCCCSSCTTCCHHHHTTCBCCHHHHHHHHHHHHHHHHHSSCTTCCSSHHHH--HHHHHHTCCCSC-----SG-------
T ss_pred cccccCCCcEeChhhccCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCHHHH--HHHHHhccCCCC-----hh-------
Confidence 3345699999999999988999999999999999999999999987654211 111111000000 00
Q ss_pred cccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1046 AEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1046 ~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
.......++.+++.+|++.||.+||+++|+++
T Consensus 311 -~~~~~~~~~~~li~~~L~~dp~~Rps~~e~l~ 342 (373)
T 2x4f_A 311 -EFQDISEEAKEFISKLLIKEKSWRISASEALK 342 (373)
T ss_dssp -GGTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred -hhccCCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence 01123457888999999999999999999986
No 133
>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}
Probab=100.00 E-value=9.2e-38 Score=367.65 Aligned_cols=247 Identities=26% Similarity=0.385 Sum_probs=207.1
Q ss_pred cCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCc---cchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCe
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGL---EGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSE 879 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~ 879 (1088)
.++|.+.+.||+|+||.||+|++. +|+.||||++..... .....+.+|+++++. ++||||+++++++.....
T Consensus 15 ~~~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~----l~HpnIv~l~~~~~~~~~ 90 (476)
T 2y94_A 15 IGHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKL----FRHPHIIKLYQVISTPSD 90 (476)
T ss_dssp ETTEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTT----CCCTTBCCEEEEEECSSE
T ss_pred ecCEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHh----CCCCCCCcEEEEEEECCE
Confidence 367999999999999999999976 799999999976422 234578899999986 679999999999999999
Q ss_pred EEEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccceeec
Q 001384 880 KILVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARVVS 959 (1088)
Q Consensus 880 ~~lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~~ 959 (1088)
.++||||+++|+|.+++...+++++.+++.++.||+.||+|||+. +|+||||||+||+++.++.+||+|||++....
T Consensus 91 ~~lv~E~~~gg~L~~~l~~~~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDLkp~NIll~~~~~vkL~DFG~a~~~~ 167 (476)
T 2y94_A 91 IFMVMEYVSGGELFDYICKNGRLDEKESRRLFQQILSGVDYCHRH---MVVHRDLKPENVLLDAHMNAKIADFGLSNMMS 167 (476)
T ss_dssp EEEEEECCSSEEHHHHTTSSSSCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCSGGGEEECTTCCEEECCCSSCEECC
T ss_pred EEEEEeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CCCcccccHHHEEEecCCCeEEEeccchhhcc
Confidence 999999999999999999888899999999999999999999999 99999999999999999999999999998765
Q ss_pred CCCCcccccccccccccCccccCCCCC-CcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCCCCCccccch
Q 001384 960 AGDSHVSTTIAGTVGYVAPEYGQTWQA-TTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRHGPGRAVIPV 1038 (1088)
Q Consensus 960 ~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1038 (1088)
... ......||+.|+|||++.+..+ +.++||||+||++|||++|+.||.+.... .....+.....
T Consensus 168 ~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~~~--~~~~~i~~~~~---------- 233 (476)
T 2y94_A 168 DGE--FLRTSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDDDHVP--TLFKKICDGIF---------- 233 (476)
T ss_dssp TTC--CBCCCCSCSTTCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSSCCSSSH--HHHHHHHTTCC----------
T ss_pred ccc--cccccCCCcCeEChhhccCCCCCCCcceehhhHHHHHHHhhCCCCCCCCCHH--HHHHHHhcCCc----------
Confidence 432 2345679999999999887765 78999999999999999999999875431 11122211000
Q ss_pred hhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1039 VLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1039 ~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
..+.....++.+++.+|++.||++||+++|+++
T Consensus 234 -------~~p~~~s~~~~~Li~~~L~~dP~~Rpt~~eil~ 266 (476)
T 2y94_A 234 -------YTPQYLNPSVISLLKHMLQVDPMKRATIKDIRE 266 (476)
T ss_dssp -------CCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred -------CCCccCCHHHHHHHHHHcCCCchhCcCHHHHHh
Confidence 001122356888999999999999999999986
No 134
>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A
Probab=100.00 E-value=1.7e-38 Score=364.56 Aligned_cols=264 Identities=18% Similarity=0.254 Sum_probs=201.3
Q ss_pred cCCCCccceecccCceEEEEEEeCC------CcEEEEEEccccCccch-----------HHHHHHHHHHhCCCCCCCCCc
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLPD------GREVAVKKLQREGLEGE-----------REFRAEMEVLSGNGFGWPHPN 866 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~~------~~~vavK~~~~~~~~~~-----------~~~~~E~~~l~~~~~~l~h~n 866 (1088)
.++|++.+.||+|+||.||+|.++. ++.||||++........ ..+..|+..+. .++|||
T Consensus 34 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~----~l~h~~ 109 (364)
T 3op5_A 34 AAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTR----KLKYLG 109 (364)
T ss_dssp CCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHT----TCSCCC
T ss_pred CCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHh----hccCCC
Confidence 4689999999999999999999764 47899999876531110 11222333333 367999
Q ss_pred eeEEeeEEecC----CeEEEEEEecCCCCHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEE
Q 001384 867 LVTLYGWCLDG----SEKILVYEYMEGGSLEDIISDR-TRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLL 941 (1088)
Q Consensus 867 iv~l~~~~~~~----~~~~lv~e~~~~gsL~~~l~~~-~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll 941 (1088)
|+++++++... ...++||||+ +++|.++++.. ..+++.+++.++.||+.||+|||++ +|+||||||+||++
T Consensus 110 iv~~~~~~~~~~~~~~~~~lv~e~~-g~~L~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~---~iiHrDlkp~Nill 185 (364)
T 3op5_A 110 VPKYWGSGLHDKNGKSYRFMIMDRF-GSDLQKIYEANAKRFSRKTVLQLSLRILDILEYIHEH---EYVHGDIKASNLLL 185 (364)
T ss_dssp SCCEEEEEEEEETTEEEEEEEEECE-EEEHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEE
T ss_pred CCeEEeeeeeccCCcceEEEEEeCC-CCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHC---CeEEecCCHHHEEE
Confidence 99999998764 4589999999 99999999876 5799999999999999999999999 99999999999999
Q ss_pred c--CCCCEEEeecccceeecCCCCc------ccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCc
Q 001384 942 D--KEGKALVTDFGLARVVSAGDSH------VSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGE 1013 (1088)
Q Consensus 942 ~--~~~~~kl~Dfg~a~~~~~~~~~------~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~ 1013 (1088)
+ .++.+||+|||+++.+...... ......||+.|+|||++.+..++.++|||||||++|||++|+.||.+..
T Consensus 186 ~~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~Pf~~~~ 265 (364)
T 3op5_A 186 NYKNPDQVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTGHLPWEDNL 265 (364)
T ss_dssp ESSCTTCEEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGT
T ss_pred ecCCCCeEEEEECCcceecccCCcccccccCcccccCCCCCccCHHHhCCCCCCchhhHHHHHHHHHHHHhCCCCccccc
Confidence 9 8899999999999876533211 1133559999999999999999999999999999999999999998532
Q ss_pred h--hHHHHHHhhhccCCCCCCccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhhCC
Q 001384 1014 E--CLVEWGRRVMGYGRHGPGRAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKILP 1085 (1088)
Q Consensus 1014 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i~~ 1085 (1088)
. ....+...... .......+.... ....+.++.+++.+|++.||++||++++|++.|+++++
T Consensus 266 ~~~~~~~~~~~~~~----~~~~~~~~~~~~------~~~~~~~~~~li~~cl~~~p~~RP~~~~l~~~l~~~~~ 329 (364)
T 3op5_A 266 KDPKYVRDSKIRYR----ENIASLMDKCFP------AANAPGEIAKYMETVKLLDYTEKPLYENLRDILLQGLK 329 (364)
T ss_dssp TCHHHHHHHHHHHH----HCHHHHHHHHSC------TTCCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHhh----hhHHHHHHHhcc------cccCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHH
Confidence 2 22222111110 000111111110 01224578889999999999999999999999998864
No 135
>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*
Probab=100.00 E-value=3.2e-38 Score=348.78 Aligned_cols=255 Identities=24% Similarity=0.365 Sum_probs=203.9
Q ss_pred cCCCCccceecccCceEEEEEEeCC----CcEEEEEEccccC-ccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCC
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLPD----GREVAVKKLQREG-LEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGS 878 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~~----~~~vavK~~~~~~-~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~ 878 (1088)
.++|++.+.||+|+||.||+|++.. +..||||++.... ....+.+.+|+++++. ++||||+++++++.+ +
T Consensus 11 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~----l~h~~i~~~~~~~~~-~ 85 (281)
T 3cc6_A 11 REDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKN----LDHPHIVKLIGIIEE-E 85 (281)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHH----HCCTTBCCEEEEECS-S
T ss_pred ccceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHHHh----CCCCCcceEEEEEcC-C
Confidence 3578899999999999999998542 3469999998653 2345678899999987 679999999999865 4
Q ss_pred eEEEEEEecCCCCHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeeccccee
Q 001384 879 EKILVYEYMEGGSLEDIISDR-TRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARV 957 (1088)
Q Consensus 879 ~~~lv~e~~~~gsL~~~l~~~-~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~ 957 (1088)
..++||||+++++|.++++.. ..+++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||.+..
T Consensus 86 ~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~ 162 (281)
T 3cc6_A 86 PTWIIMELYPYGELGHYLERNKNSLKVLTLVLYSLQICKAMAYLESI---NCVHRDIAVRNILVASPECVKLGDFGLSRY 162 (281)
T ss_dssp SCEEEEECCTTCBHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEEEETTEEEECCCCGGGC
T ss_pred CCEEEEecCCCCCHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCccceEEECCCCcEEeCccCCCcc
Confidence 568999999999999999765 4599999999999999999999999 999999999999999999999999999987
Q ss_pred ecCCCCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHh-CCcCCCCCchh-HHHHHHhhhccCCCCCCccc
Q 001384 958 VSAGDSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELAT-GRRALEGGEEC-LVEWGRRVMGYGRHGPGRAV 1035 (1088)
Q Consensus 958 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~ellt-g~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 1035 (1088)
.............++..|+|||.+.+..++.++||||||+++|||++ |+.||...... .........
T Consensus 163 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~llt~g~~p~~~~~~~~~~~~~~~~~----------- 231 (281)
T 3cc6_A 163 IEDEDYYKASVTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQPFFWLENKDVIGVLEKGD----------- 231 (281)
T ss_dssp C---------CCCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCGGGHHHHHHHTC-----------
T ss_pred cccccccccccCCCCcceeCchhhccCCCCchhccHHHHHHHHHHHhCCCCCcccCChHHHHHHHhcCC-----------
Confidence 65443333344567889999999988899999999999999999998 99999765432 111111110
Q ss_pred cchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhhCC
Q 001384 1036 IPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKILP 1085 (1088)
Q Consensus 1036 ~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i~~ 1085 (1088)
....+...+..+.+++.+|++.||++||++.|+++.|+++..
T Consensus 232 --------~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~~~~ 273 (281)
T 3cc6_A 232 --------RLPKPDLCPPVLYTLMTRCWDYDPSDRPRFTELVCSLSDVYQ 273 (281)
T ss_dssp --------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred --------CCCCCCCCCHHHHHHHHHHccCCchhCcCHHHHHHHHHHHHH
Confidence 001122234568889999999999999999999999998753
No 136
>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*
Probab=100.00 E-value=2.1e-37 Score=348.34 Aligned_cols=273 Identities=23% Similarity=0.333 Sum_probs=193.3
Q ss_pred cCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCc-cchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeEE
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGL-EGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEKI 881 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~~ 881 (1088)
.++|++.+.||+|+||.||+|.++ +|+.||||++..... .....+.+|++++++ ++||||+++++++.+++..+
T Consensus 4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~----l~hp~iv~~~~~~~~~~~~~ 79 (317)
T 2pmi_A 4 SSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKE----LKHENIVRLYDVIHTENKLT 79 (317)
T ss_dssp ---------------CEEEEEECSSSCCEEEEEEEECCSTTCSCHHHHHHHHHHTT----CCBTTBCCEEEEECCTTEEE
T ss_pred ccceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeecccccccHHHHHHHHHHHHh----cCCCCcceEEEEEEECCeEE
Confidence 467999999999999999999976 689999999976532 234678899999987 67999999999999999999
Q ss_pred EEEEecCCCCHHHHHhhc------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccc
Q 001384 882 LVYEYMEGGSLEDIISDR------TRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLA 955 (1088)
Q Consensus 882 lv~e~~~~gsL~~~l~~~------~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a 955 (1088)
+||||++ |+|.+++... ..+++..++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||++
T Consensus 80 lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~---~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~ 155 (317)
T 2pmi_A 80 LVFEFMD-NDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCHEN---KILHRDLKPQNLLINKRGQLKLGDFGLA 155 (317)
T ss_dssp EEEECCC-CBHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCSSC
T ss_pred EEEEecC-CCHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCChHHeEEcCCCCEEECcCccc
Confidence 9999998 5999998653 3589999999999999999999999 9999999999999999999999999999
Q ss_pred eeecCCCCcccccccccccccCccccCC-CCCCcchhHHHHHHHHHHHHhCCcCCCCCchhH-HHHHHhhhccCCCCCCc
Q 001384 956 RVVSAGDSHVSTTIAGTVGYVAPEYGQT-WQATTKGDVYSFGVLAMELATGRRALEGGEECL-VEWGRRVMGYGRHGPGR 1033 (1088)
Q Consensus 956 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~-~~~~~~~~~~~~~~~~~ 1033 (1088)
+...... .......+|+.|+|||++.+ ..++.++||||+||++|||++|+.||.+..... .................
T Consensus 156 ~~~~~~~-~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~ 234 (317)
T 2pmi_A 156 RAFGIPV-NTFSSEVVTLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITGKPLFPGTNDEEQLKLIFDIMGTPNESLWP 234 (317)
T ss_dssp EETTSCC-CCCCCCCSCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCTTTCG
T ss_pred eecCCCc-ccCCCCcccccccCchHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCChhHhh
Confidence 8764322 22334578999999998865 468999999999999999999999998765421 11111111100000000
Q ss_pred cc--cc---hhhcCCC---------ccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH--HHHhhCC
Q 001384 1034 AV--IP---VVLLGSG---------LAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA--MLIKILP 1085 (1088)
Q Consensus 1034 ~~--~~---~~~~~~~---------~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~--~L~~i~~ 1085 (1088)
.. .+ ....... .........++.+++.+|++.||++||+++|+++ .+.+...
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~hp~f~~~~~ 302 (317)
T 2pmi_A 235 SVTKLPKYNPNIQQRPPRDLRQVLQPHTKEPLDGNLMDFLHGLLQLNPDMRLSAKQALHHPWFAEYYH 302 (317)
T ss_dssp GGGGCTTCCTTCCCCCCCCSHHHHGGGCSSCCCHHHHHHHHHHSCSSGGGSCCHHHHTTSGGGGGGCC
T ss_pred hhhhhhhcccccccccchhHHHhhcccccccCCHHHHHHHHHHCCCCcccCCCHHHHhCChhhhcccc
Confidence 00 00 0000000 0001123357889999999999999999999975 3444433
No 137
>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*
Probab=100.00 E-value=2.1e-38 Score=357.91 Aligned_cols=254 Identities=26% Similarity=0.409 Sum_probs=202.6
Q ss_pred CCCCccceecccCceEEEEEEeC-CCcE----EEEEEccccC-ccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCC
Q 001384 805 GKFSEDRIIGKGGFGTVYRGVLP-DGRE----VAVKKLQREG-LEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGS 878 (1088)
Q Consensus 805 ~~~~~~~~LG~G~~g~Vy~~~~~-~~~~----vavK~~~~~~-~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~ 878 (1088)
++|++.+.||+|+||+||+|++. +++. ||+|++.... ......+.+|+.++.. ++||||+++++++. +.
T Consensus 13 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~~----l~h~~iv~~~~~~~-~~ 87 (325)
T 3kex_A 13 TELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGS----LDHAHIVRLLGLCP-GS 87 (325)
T ss_dssp TTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHHT----CCCTTBCCEEEEEC-BS
T ss_pred hHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHHHHHhc----CCCCCcCeEEEEEc-CC
Confidence 57889999999999999999965 4443 7888775442 2233467788988886 67999999999986 45
Q ss_pred eEEEEEEecCCCCHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeeccccee
Q 001384 879 EKILVYEYMEGGSLEDIISDR-TRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARV 957 (1088)
Q Consensus 879 ~~~lv~e~~~~gsL~~~l~~~-~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~ 957 (1088)
..++||||+++|+|.+++... ..+++..++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++.
T Consensus 88 ~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~ 164 (325)
T 3kex_A 88 SLQLVTQYLPLGSLLDHVRQHRGALGPQLLLNWGVQIAKGMYYLEEH---GMVHRNLAARNVLLKSPSQVQVADFGVADL 164 (325)
T ss_dssp SEEEEEECCTTCBSHHHHHSSGGGSCTTHHHHHHHHHHHHHHHHHHT---TCCCSCCSSTTEEESSSSCEEECSCSGGGG
T ss_pred ccEEEEEeCCCCCHHHHHHHccccCCHHHHHHHHHHHHHHHHHHHhC---CCCCCccchheEEECCCCeEEECCCCcccc
Confidence 688999999999999999764 5799999999999999999999999 999999999999999999999999999987
Q ss_pred ecCCCCc-ccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHh-CCcCCCCCchhH-HHHHHhhhccCCCCCCcc
Q 001384 958 VSAGDSH-VSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELAT-GRRALEGGEECL-VEWGRRVMGYGRHGPGRA 1034 (1088)
Q Consensus 958 ~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~ellt-g~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~ 1034 (1088)
....... ......++..|+|||.+.+..++.++||||+|+++|||++ |+.||.+..... ........ .
T Consensus 165 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~---~------ 235 (325)
T 3kex_A 165 LPPDDKQLLYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYAGLRLAEVPDLLEKGE---R------ 235 (325)
T ss_dssp SCCCTTCCC-----CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCTTHHHHHHHTTC---B------
T ss_pred cCcccccccccCCCCcccccChHHhccCCCChhhHhHHhHHHHHHHHhCCCCCccccCHHHHHHHHHcCC---C------
Confidence 6543322 2344567889999999998899999999999999999999 999998754321 11111110 0
Q ss_pred ccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhhCC
Q 001384 1035 VIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKILP 1085 (1088)
Q Consensus 1035 ~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i~~ 1085 (1088)
...+.....++.+++.+|++.||.+||+++|+++.|+++.+
T Consensus 236 ----------~~~~~~~~~~~~~li~~~l~~dp~~Rps~~el~~~l~~~~~ 276 (325)
T 3kex_A 236 ----------LAQPQICTIDVYMVMVKCWMIDENIRPTFKELANEFTRMAR 276 (325)
T ss_dssp ----------CCCCTTBCTTTTHHHHHHTCSCTTTSCCHHHHHHHHHHHTT
T ss_pred ----------CCCCCcCcHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHh
Confidence 00111223357789999999999999999999999999865
No 138
>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A
Probab=100.00 E-value=1.8e-37 Score=349.61 Aligned_cols=251 Identities=21% Similarity=0.283 Sum_probs=208.0
Q ss_pred cCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCcc------chHHHHHHHHHHhCCCCCCCCCceeEEeeEEec
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGLE------GEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLD 876 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~------~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~ 876 (1088)
.++|++.+.||+|+||.||+|++. +|+.||||++...... ..+.+.+|++++.. +.||||+++++++.+
T Consensus 11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~----l~h~~iv~~~~~~~~ 86 (321)
T 2a2a_A 11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQ----VLHHNVITLHDVYEN 86 (321)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHH----CCCTTBCCEEEEEEC
T ss_pred hccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHh----CCCCCcceEEEEEec
Confidence 356899999999999999999976 6899999999765322 35678999999987 679999999999999
Q ss_pred CCeEEEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCC----CEEEeec
Q 001384 877 GSEKILVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEG----KALVTDF 952 (1088)
Q Consensus 877 ~~~~~lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~----~~kl~Df 952 (1088)
+...++||||+++++|.+++.....+++.+++.++.|++.||+|||++ +|+||||||+||+++.++ .+||+||
T Consensus 87 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~lH~~---~ivH~dikp~NIl~~~~~~~~~~~kl~Df 163 (321)
T 2a2a_A 87 RTDVVLILELVSGGELFDFLAQKESLSEEEATSFIKQILDGVNYLHTK---KIAHFDLKPENIMLLDKNIPIPHIKLIDF 163 (321)
T ss_dssp SSEEEEEECCCCSCBHHHHHHTCSCEEHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESCTTSSSCCEEECCC
T ss_pred CCEEEEEEEcCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCChHHEEEecCCCCcCCEEEccC
Confidence 999999999999999999999888899999999999999999999999 999999999999999888 7999999
Q ss_pred ccceeecCCCCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCCCCC
Q 001384 953 GLARVVSAGDSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRHGPG 1032 (1088)
Q Consensus 953 g~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~ 1032 (1088)
|+++...... ......||+.|+|||.+.+..++.++||||+|+++|+|++|+.||.+..... ..........
T Consensus 164 g~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~--~~~~i~~~~~---- 235 (321)
T 2a2a_A 164 GLAHEIEDGV--EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQE--TLANITSVSY---- 235 (321)
T ss_dssp TTCEECCTTC--CCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHH--HHHHHHTTCC----
T ss_pred ccceecCccc--cccccCCCCCccCcccccCCCCCCccccHHHHHHHHHHHHCCCCCCCCCHHH--HHHHHHhccc----
Confidence 9998765432 2344568999999999998899999999999999999999999998754321 1111111000
Q ss_pred ccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1033 RAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1033 ~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
..+... .......+.+++.+|++.||++||+++|+++
T Consensus 236 --~~~~~~-------~~~~~~~~~~li~~~l~~dp~~Rps~~e~l~ 272 (321)
T 2a2a_A 236 --DFDEEF-------FSHTSELAKDFIRKLLVKETRKRLTIQEALR 272 (321)
T ss_dssp --CCCHHH-------HTTCCHHHHHHHHTTSCSSTTTSCCHHHHHH
T ss_pred --ccChhh-------hcccCHHHHHHHHHHcCCChhhCcCHHHHhc
Confidence 001000 1122356888999999999999999999986
No 139
>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=5.7e-38 Score=355.42 Aligned_cols=257 Identities=24% Similarity=0.406 Sum_probs=203.0
Q ss_pred CCCCccceecccCceEEEEEEeCC-----CcEEEEEEccccCc-cchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCC
Q 001384 805 GKFSEDRIIGKGGFGTVYRGVLPD-----GREVAVKKLQREGL-EGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGS 878 (1088)
Q Consensus 805 ~~~~~~~~LG~G~~g~Vy~~~~~~-----~~~vavK~~~~~~~-~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~ 878 (1088)
++|++.+.||+|+||.||+|.++. +..||||++..... .....+.+|++++.. ++||||+++++++.+.+
T Consensus 44 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~----l~h~~iv~~~~~~~~~~ 119 (333)
T 1mqb_A 44 SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQ----FSHHNIIRLEGVISKYK 119 (333)
T ss_dssp TTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHT----CCCTTBCCEEEEECSSS
T ss_pred HHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHHHHHHh----CCCCCCCcEEEEEecCC
Confidence 567788999999999999998642 23599999986532 234568899999987 67999999999999999
Q ss_pred eEEEEEEecCCCCHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeeccccee
Q 001384 879 EKILVYEYMEGGSLEDIISDR-TRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARV 957 (1088)
Q Consensus 879 ~~~lv~e~~~~gsL~~~l~~~-~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~ 957 (1088)
..++||||+++|+|.+++... ..+++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++.
T Consensus 120 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~ 196 (333)
T 1mqb_A 120 PMMIITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLANM---NYVHRDLAARNILVNSNLVCKVSDFGLSRV 196 (333)
T ss_dssp SEEEEEECCTTEEHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCCCC---
T ss_pred CcEEEEeCCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChheEEECCCCcEEECCCCcchh
Confidence 999999999999999999764 5799999999999999999999999 999999999999999999999999999987
Q ss_pred ecCCCCc--ccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHh-CCcCCCCCchhHHHHHHhhhccCCCCCCcc
Q 001384 958 VSAGDSH--VSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELAT-GRRALEGGEECLVEWGRRVMGYGRHGPGRA 1034 (1088)
Q Consensus 958 ~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 1034 (1088)
....... ......+|..|+|||.+.+..++.++||||||+++|||++ |+.||........ .......
T Consensus 197 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~~~~--~~~~~~~-------- 266 (333)
T 1mqb_A 197 LEDDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSNHEV--MKAINDG-------- 266 (333)
T ss_dssp --------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHH--HHHHHTT--------
T ss_pred hccccccccccCCCCccccccCchhcccCCCCchhhhHHHHHHHHHHHcCCCCCcccCCHHHH--HHHHHCC--------
Confidence 6543221 1223346788999999988899999999999999999999 9999976543211 1111100
Q ss_pred ccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhhCCC
Q 001384 1035 VIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKILPH 1086 (1088)
Q Consensus 1035 ~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i~~~ 1086 (1088)
...+.+...+..+.+++.+|++.||++||+++|+++.|+++++.
T Consensus 267 --------~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~~~~ 310 (333)
T 1mqb_A 267 --------FRLPTPMDCPSAIYQLMMQCWQQERARRPKFADIVSILDKLIRA 310 (333)
T ss_dssp --------CCCCCCTTCBHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHS
T ss_pred --------CcCCCcccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhc
Confidence 00111223345788999999999999999999999999998654
No 140
>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...
Probab=100.00 E-value=1.1e-37 Score=344.13 Aligned_cols=246 Identities=27% Similarity=0.414 Sum_probs=202.3
Q ss_pred cCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccC---ccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCe
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREG---LEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSE 879 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~ 879 (1088)
.++|++.+.||+|+||.||+|++. +++.||||++.... ......+.+|++++++ ++||||+++++++.+...
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~----l~h~~i~~~~~~~~~~~~ 83 (279)
T 3fdn_A 8 LEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSH----LRHPNILRLYGYFHDATR 83 (279)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTT----CCCTTBCCEEEEEECSSE
T ss_pred cccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHc----CCCCCCcchhheEecCCE
Confidence 357899999999999999999976 57799999986542 1234678899999986 679999999999999999
Q ss_pred EEEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccceeec
Q 001384 880 KILVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARVVS 959 (1088)
Q Consensus 880 ~~lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~~ 959 (1088)
.++||||+++|+|.+++....++++..++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||++....
T Consensus 84 ~~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~qi~~~l~~LH~~---~i~H~dlkp~Nili~~~~~~~l~Dfg~~~~~~ 160 (279)
T 3fdn_A 84 VYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSK---RVIHRDIKPENLLLGSAGELKIADFGWSVHAP 160 (279)
T ss_dssp EEEEECCCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTT---TCEECCCCGGGEEECTTSCEEECSCCEESCC-
T ss_pred EEEEEecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CEecccCChHhEEEcCCCCEEEEeccccccCC
Confidence 999999999999999999888899999999999999999999999 99999999999999999999999999886543
Q ss_pred CCCCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCCCCCccccchh
Q 001384 960 AGDSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRHGPGRAVIPVV 1039 (1088)
Q Consensus 960 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1039 (1088)
.. ......|++.|+|||.+.+..++.++||||+|+++|+|++|+.||........ .........
T Consensus 161 ~~---~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~--~~~~~~~~~----------- 224 (279)
T 3fdn_A 161 SS---RRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQET--YKRISRVEF----------- 224 (279)
T ss_dssp ----------CCCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHH--HHHHHHTCC-----------
T ss_pred cc---cccccCCCCCccCHhHhccCCCCccchhHhHHHHHHHHHHCCCCCCCCcHHHH--HHHHHhCCC-----------
Confidence 21 23345789999999999998999999999999999999999999987543211 111110000
Q ss_pred hcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1040 LLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1040 ~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
..+......+.+++.+|++.||++||+++|+++
T Consensus 225 ------~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~ 257 (279)
T 3fdn_A 225 ------TFPDFVTEGARDLISRLLKHNPSQRPMLREVLE 257 (279)
T ss_dssp ------CCCTTSCHHHHHHHHHHCCSSGGGSCCHHHHHH
T ss_pred ------CCCCcCCHHHHHHHHHHhccChhhCCCHHHHhh
Confidence 011223356788999999999999999999985
No 141
>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}
Probab=100.00 E-value=1e-37 Score=349.14 Aligned_cols=252 Identities=26% Similarity=0.453 Sum_probs=198.7
Q ss_pred CCCCccceecccCceEEEEEEeCCCcEEEEEEccccCccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeEEEEE
Q 001384 805 GKFSEDRIIGKGGFGTVYRGVLPDGREVAVKKLQREGLEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEKILVY 884 (1088)
Q Consensus 805 ~~~~~~~~LG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~~lv~ 884 (1088)
++|++.+.||+|+||+||+|++. ++.||||++... ...+.+.+|++++++ ++||||+++++++.+ ..++||
T Consensus 8 ~~~~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~--~~~~~~~~E~~~l~~----l~hp~iv~~~~~~~~--~~~lv~ 78 (307)
T 2eva_A 8 KEIEVEEVVGRGAFGVVCKAKWR-AKDVAIKQIESE--SERKAFIVELRQLSR----VNHPNIVKLYGACLN--PVCLVM 78 (307)
T ss_dssp GGEEEEEEEECCSSSEEEEEEET-TEEEEEEECSST--THHHHHHHHHHHHHH----CCCTTBCCEEEBCTT--TTEEEE
T ss_pred hHeeeeeEeecCCCceEEEEEEC-CeeEEEEEecCh--hHHHHHHHHHHHHhc----CCCCCcCeEEEEEcC--CcEEEE
Confidence 46888999999999999999985 788999999754 345678999999987 679999999998874 478999
Q ss_pred EecCCCCHHHHHhhcC---CCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCC-EEEeecccceeecC
Q 001384 885 EYMEGGSLEDIISDRT---RLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGK-ALVTDFGLARVVSA 960 (1088)
Q Consensus 885 e~~~~gsL~~~l~~~~---~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~-~kl~Dfg~a~~~~~ 960 (1088)
||+++|+|.++++... .+++.+++.++.|+++||+|||+.+..+|+||||||+||+++.++. +||+|||++.....
T Consensus 79 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~~kl~Dfg~~~~~~~ 158 (307)
T 2eva_A 79 EYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQT 158 (307)
T ss_dssp ECCTTCBHHHHHHCSSSEECCCHHHHHHHHHHHHHHHHHHHTCSSSCCCCCCCSGGGEEEETTTTEEEECCCCC------
T ss_pred EcCCCCCHHHHHhccCCCCccCHHHHHHHHHHHHHHHHHHHhCCCCCeecCCCChhHEEEeCCCCEEEEccccccccccc
Confidence 9999999999998765 3789999999999999999999932228999999999999998887 79999999976532
Q ss_pred CCCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCCCCCccccchhh
Q 001384 961 GDSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRHGPGRAVIPVVL 1040 (1088)
Q Consensus 961 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1040 (1088)
. .....||+.|+|||++.+..++.++||||||+++|||++|+.||..................
T Consensus 159 ~----~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~------------- 221 (307)
T 2eva_A 159 H----MTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAFRIMWAVHNGT------------- 221 (307)
T ss_dssp ----------CCTTSSCHHHHTCCCCCTHHHHHHHHHHHHHHHHTCCTTTTTCSSHHHHHHHHHTTC-------------
T ss_pred c----cccCCCCCceEChhhhCCCCCCcHHHHHHHHHHHHHHHHCCCCchhhCccHHHHHHHHhcCC-------------
Confidence 1 22346899999999999989999999999999999999999999864332221111111000
Q ss_pred cCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhhCC
Q 001384 1041 LGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKILP 1085 (1088)
Q Consensus 1041 ~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i~~ 1085 (1088)
........+..+.+++.+|++.||++||+++|+++.|+++.+
T Consensus 222 ---~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~ 263 (307)
T 2eva_A 222 ---RPPLIKNLPKPIESLMTRCWSKDPSQRPSMEEIVKIMTHLMR 263 (307)
T ss_dssp ---CCCCBTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHGG
T ss_pred ---CCCcccccCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHH
Confidence 001112234568889999999999999999999999998864
No 142
>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}
Probab=100.00 E-value=2.7e-37 Score=344.44 Aligned_cols=249 Identities=22% Similarity=0.335 Sum_probs=197.3
Q ss_pred cCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCcc--------------------------chHHHHHHHHHHh
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGLE--------------------------GEREFRAEMEVLS 856 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~--------------------------~~~~~~~E~~~l~ 856 (1088)
.++|++.+.||+|+||.||+|++. +++.||||++...... ..+.+.+|+++++
T Consensus 12 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~ 91 (298)
T 2zv2_A 12 LNQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILK 91 (298)
T ss_dssp ETTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHH
T ss_pred ecceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHH
Confidence 367999999999999999999975 6889999999764321 1245889999999
Q ss_pred CCCCCCCCCceeEEeeEEec--CCeEEEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCC
Q 001384 857 GNGFGWPHPNLVTLYGWCLD--GSEKILVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDV 934 (1088)
Q Consensus 857 ~~~~~l~h~niv~l~~~~~~--~~~~~lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DL 934 (1088)
+ ++||||+++++++.+ ....++||||+++++|.+++. ..++++.+++.++.|++.||+|||++ +|+||||
T Consensus 92 ~----l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~-~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dl 163 (298)
T 2zv2_A 92 K----LDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPT-LKPLSEDQARFYFQDLIKGIEYLHYQ---KIIHRDI 163 (298)
T ss_dssp T----CCCTTBCCEEEEEECSSSSEEEEEEECCTTCBSCCSSC-SSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCC
T ss_pred h----CCCCCCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCC
Confidence 7 679999999999986 568899999999999988654 45699999999999999999999999 9999999
Q ss_pred CCCCEEEcCCCCEEEeecccceeecCCCCcccccccccccccCccccCCCC---CCcchhHHHHHHHHHHHHhCCcCCCC
Q 001384 935 KASNVLLDKEGKALVTDFGLARVVSAGDSHVSTTIAGTVGYVAPEYGQTWQ---ATTKGDVYSFGVLAMELATGRRALEG 1011 (1088)
Q Consensus 935 kp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~---~~~~~DvwslG~~l~elltg~~p~~~ 1011 (1088)
||+||+++.++.+||+|||+++....... ......||+.|+|||.+.+.. ++.++||||+|+++|||++|+.||..
T Consensus 164 kp~Nil~~~~~~~kl~Dfg~~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~ 242 (298)
T 2zv2_A 164 KPSNLLVGEDGHIKIADFGVSNEFKGSDA-LLSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFVFGQCPFMD 242 (298)
T ss_dssp CGGGEEECTTSCEEECCCTTCEECSSSSC-EECCCCSCGGGCCGGGCCTTCCCEESHHHHHHHHHHHHHHHHHSSCSSCC
T ss_pred CHHHEEECCCCCEEEecCCCccccccccc-cccCCcCCccccChhhhccCCCCCCCchhhhHhHHHHHHHHHHCCCCCCC
Confidence 99999999999999999999987654322 234467999999999987655 47889999999999999999999987
Q ss_pred CchhHHHHHHhhhccCCCCCCccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1012 GEECLVEWGRRVMGYGRHGPGRAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1012 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
.... .+............ .......++.+++.+|++.||++||+++|+++
T Consensus 243 ~~~~--~~~~~~~~~~~~~~---------------~~~~~~~~l~~li~~~l~~dp~~R~s~~e~l~ 292 (298)
T 2zv2_A 243 ERIM--CLHSKIKSQALEFP---------------DQPDIAEDLKDLITRMLDKNPESRIVVPEIKL 292 (298)
T ss_dssp SSHH--HHHHHHHHCCCCCC---------------SSSCCCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred ccHH--HHHHHHhcccCCCC---------------CccccCHHHHHHHHHHhhcChhhCCCHHHHhc
Confidence 5432 12121111000000 01122356888999999999999999999864
No 143
>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}
Probab=100.00 E-value=8.5e-38 Score=354.28 Aligned_cols=248 Identities=22% Similarity=0.314 Sum_probs=198.1
Q ss_pred cCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCc-cchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCC---
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGL-EGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGS--- 878 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~--- 878 (1088)
.++|++.+.||+|+||.||+|+++ +|+.||||++..... ...+.+.+|++++++ ++||||+++++++.+..
T Consensus 5 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~----l~hpniv~~~~~~~~~~~~~ 80 (332)
T 3qd2_B 5 LTDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAK----LEHPGIVRYFNAWLETPPEK 80 (332)
T ss_dssp HHHEEEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCSTTTHHHHHHHHHHHHTS----CCCTTBCCEEEEEEECCSCH
T ss_pred hhcCceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCCchhHHHHHHHHHHHHHh----CCCCCEeeEEEEEEEeccch
Confidence 357899999999999999999986 799999999975432 344678999999997 67999999999986543
Q ss_pred ------------------------------------------------------eEEEEEEecCCCCHHHHHhhcCC---
Q 001384 879 ------------------------------------------------------EKILVYEYMEGGSLEDIISDRTR--- 901 (1088)
Q Consensus 879 ------------------------------------------------------~~~lv~e~~~~gsL~~~l~~~~~--- 901 (1088)
..++||||+++|+|.++++....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~ 160 (332)
T 3qd2_B 81 WQEEMDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLED 160 (332)
T ss_dssp HHHHHHC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCCSGGG
T ss_pred hhhhhhhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccCccc
Confidence 37999999999999999987543
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccceeecCCCC-----------ccccccc
Q 001384 902 LTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARVVSAGDS-----------HVSTTIA 970 (1088)
Q Consensus 902 l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~~~~~~-----------~~~~~~~ 970 (1088)
.++..++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++....... .......
T Consensus 161 ~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (332)
T 3qd2_B 161 REHGVCLHIFIQIAEAVEFLHSK---GLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQV 237 (332)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEECSCC--------------CCCSCC
T ss_pred hhhHHHHHHHHHHHHHHHHHHhC---CeeecCCCcccEEEeCCCCEEEeecCcccccccchhhccccccccccccccccC
Confidence 56677899999999999999999 999999999999999999999999999988754321 1223457
Q ss_pred ccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCCCCCccccchhhcCCCccccHH
Q 001384 971 GTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRHGPGRAVIPVVLLGSGLAEGAE 1050 (1088)
Q Consensus 971 gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1050 (1088)
||+.|+|||++.+..++.++||||+|+++|||++|..|+.... ........ .........
T Consensus 238 gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~~~~~~~~~----~~~~~~~~----------------~~~~~~~~~ 297 (332)
T 3qd2_B 238 GTKLYMSPEQIHGNNYSHKVDIFSLGLILFELLYSFSTQMERV----RIITDVRN----------------LKFPLLFTQ 297 (332)
T ss_dssp -CGGGSCHHHHHCCCCCTHHHHHHHHHHHHHHHSCCCCHHHHH----HHHHHHHT----------------TCCCHHHHH
T ss_pred CCcCccChHHhcCCCCcchhhHHHHHHHHHHHHHcCCChhHHH----HHHHHhhc----------------cCCCccccc
Confidence 9999999999999899999999999999999999877753211 11111110 001111234
Q ss_pred HHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1051 EMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1051 ~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
....+.+++.+|++.||++||+++|+++
T Consensus 298 ~~~~~~~li~~~l~~~p~~Rps~~~~l~ 325 (332)
T 3qd2_B 298 KYPQEHMMVQDMLSPSPTERPEATDIIE 325 (332)
T ss_dssp HCHHHHHHHHHHHCSSGGGSCCHHHHHH
T ss_pred CChhHHHHHHHHccCCCCcCCCHHHHhh
Confidence 4467789999999999999999999986
No 144
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=100.00 E-value=2.1e-38 Score=381.26 Aligned_cols=256 Identities=28% Similarity=0.405 Sum_probs=211.3
Q ss_pred cCCCCccceecccCceEEEEEEeCCCcEEEEEEccccCccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeEEEE
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLPDGREVAVKKLQREGLEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEKILV 883 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~~lv 883 (1088)
.++|++.+.||+|+||.||+|.++.+..||||+++... ...+++.+|++++++ ++||||+++++++.+ ...++|
T Consensus 266 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~----l~hpniv~~~~~~~~-~~~~lv 339 (535)
T 2h8h_A 266 RESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKK----LRHEKLVQLYAVVSE-EPIYIV 339 (535)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTEEEEEEEECTTS-SCHHHHHHHHHHHHH----CCCTTBCCEEEEECS-SSCEEE
T ss_pred hhhhhhheecccCCCeEEEEEEECCCceEEEEEeCCCC-CCHHHHHHHHHHHHh----CCCCCEeeEEEEEee-ccceEe
Confidence 45688899999999999999999888889999998654 345689999999997 679999999999876 678999
Q ss_pred EEecCCCCHHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccceeecCC
Q 001384 884 YEYMEGGSLEDIISDR--TRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARVVSAG 961 (1088)
Q Consensus 884 ~e~~~~gsL~~~l~~~--~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~~~~ 961 (1088)
|||+++|+|.++++.. ..+++.+++.++.||+.||+|||++ +||||||||+|||++.++.+||+|||+++.....
T Consensus 340 ~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~---~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~ 416 (535)
T 2h8h_A 340 TEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIEDN 416 (535)
T ss_dssp ECCCTTEEHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCTTSTTTCCCH
T ss_pred eehhcCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCCHhhEEEcCCCcEEEcccccceecCCC
Confidence 9999999999999753 4699999999999999999999999 9999999999999999999999999999865432
Q ss_pred CCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHh-CCcCCCCCchhHHHHHHhhhccCCCCCCccccchhh
Q 001384 962 DSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELAT-GRRALEGGEECLVEWGRRVMGYGRHGPGRAVIPVVL 1040 (1088)
Q Consensus 962 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1040 (1088)
.........++..|+|||.+....++.++|||||||++|||++ |+.||.+..... .......
T Consensus 417 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlGv~l~el~t~g~~P~~~~~~~~--~~~~i~~--------------- 479 (535)
T 2h8h_A 417 EYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNRE--VLDQVER--------------- 479 (535)
T ss_dssp HHHTTCSTTSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTTCCSSTTCCHHH--HHHHHHT---------------
T ss_pred ceecccCCcCcccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHH--HHHHHHc---------------
Confidence 2122233456789999999888899999999999999999999 999998754321 1111110
Q ss_pred cCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhhCCC
Q 001384 1041 LGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKILPH 1086 (1088)
Q Consensus 1041 ~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i~~~ 1086 (1088)
+.....+..+...+.+++.+||+.||++||++++|++.|++++..
T Consensus 480 -~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~~l~~~L~~~~~~ 524 (535)
T 2h8h_A 480 -GYRMPCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTS 524 (535)
T ss_dssp -TCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSSCC
T ss_pred -CCCCCCCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHhhc
Confidence 001111233446788999999999999999999999999998764
No 145
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=4.3e-37 Score=362.15 Aligned_cols=369 Identities=17% Similarity=0.154 Sum_probs=241.0
Q ss_pred CCCCCCCcCccCCCCCCCcEEECccccccCcccCCCCCCCceeecccccccccccCchhhhcccceEEeccCccCCCCCC
Q 001384 112 RNTFSGSIPDDLSSCRSLKYLNLSHNILSGDLNLSGLRSLEILDLSVNRIHGEISFSFPAICEKLVVANLSLNNLTGRID 191 (1088)
Q Consensus 112 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 191 (1088)
...+.+..+..++++++|++|+|++|.+++...+..+++|++|+|++|++++. + ...+++|++|+|++|++++. +
T Consensus 27 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~-~---~~~l~~L~~L~Ls~N~l~~~-~ 101 (457)
T 3bz5_A 27 AFEMQATDTISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTL-D---LSQNTNLTYLACDSNKLTNL-D 101 (457)
T ss_dssp HTTCCTTSEEEHHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCC-C---CTTCTTCSEEECCSSCCSCC-C
T ss_pred hcCcCcccccChhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeE-c---cccCCCCCEEECcCCCCcee-e
Confidence 34455566667889999999999999999877788999999999999999874 3 23457788888888888875 2
Q ss_pred ccccCCCCCcEEEccCccccccccccCcccceecccCcccccccccccccCCCccCEEEcCCCcccccCcccccCCCCCc
Q 001384 192 TCFDGCLNLRYLDLSSNNFRGNIWNGLAQLVEFSVSENVLSGVVSSSVFKENCSLEIFDLSENEFIGDFPGEVSNCRNLV 271 (1088)
Q Consensus 192 ~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 271 (1088)
++++++|++|++++|++++..+..+++|+ +|++++|++++. + ++++++|+
T Consensus 102 --~~~l~~L~~L~L~~N~l~~l~~~~l~~L~-------------------------~L~l~~N~l~~l-~--l~~l~~L~ 151 (457)
T 3bz5_A 102 --VTPLTKLTYLNCDTNKLTKLDVSQNPLLT-------------------------YLNCARNTLTEI-D--VSHNTQLT 151 (457)
T ss_dssp --CTTCTTCCEEECCSSCCSCCCCTTCTTCC-------------------------EEECTTSCCSCC-C--CTTCTTCC
T ss_pred --cCCCCcCCEEECCCCcCCeecCCCCCcCC-------------------------EEECCCCcccee-c--cccCCcCC
Confidence 77788888888888877653334444444 455554444432 1 44445555
Q ss_pred EEEccCccccCCCccccCCCCCCCEEeCCCCcCCccCcccccCCCCCcEEEcCCCcCCCchhHhhhcccccceeecCcCc
Q 001384 272 VLNLFGNNFSGPIPAEIGSISGLEALFLGKNNFLSVIPESLLNLSKLEVLDLSSNNFGGEVQKIFGRFTQVKILALHSNS 351 (1088)
Q Consensus 272 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~ 351 (1088)
+|++++|+..+.+ .++.+++|+.|++++|++++. | +..+++|+.|++++|++++. .++.+++|+.|++++|+
T Consensus 152 ~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~ 223 (457)
T 3bz5_A 152 ELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNK 223 (457)
T ss_dssp EEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSC
T ss_pred EEECCCCCccccc--ccccCCcCCEEECCCCcccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCc
Confidence 5555555333233 244455555555555555442 2 44455555555555555543 14445555555555555
Q ss_pred ccCCCCCccccCCCCcCEEEccCCccCCCCCccccCCcCcceeeccccccCCcCCcccCCCCCCcEEEccCCcCCCCCCc
Q 001384 352 YIDGMNSSGILKLPNISRLDLSHNNFTGPLPVEISQMRSLKFLILAHNRFNGSIPAVYGNMPNLQTLDLSFNELTGPIPP 431 (1088)
Q Consensus 352 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 431 (1088)
+.. ++ +..+++|+.|++++|++++.. ++.+++|+.|++++| +|+.|++++|++.|.+|
T Consensus 224 l~~-ip---~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~- 281 (457)
T 3bz5_A 224 LTE-ID---VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ- 281 (457)
T ss_dssp CSC-CC---CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE-
T ss_pred ccc-cC---ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc-
Confidence 433 11 456788888888888888643 456778888887775 35567888888877776
Q ss_pred cccCCCCCcEEEccccccccCCCccccCCCCCCeEEccCCcCccCCCchhhccCCCCCccccccccCCcccccCCccccc
Q 001384 432 SIGNLTSLLWLMLANNSLSGEIPGEIGNCTSLLWLNLSNNKLSGNIPPEVMTIGRNARPTFEANQRNGERTIAGSSECLS 511 (1088)
Q Consensus 432 ~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~ 511 (1088)
++++++|+.|++++|.+.|.+|. ..++|+.|++++|+
T Consensus 282 -~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~~--------------------------------------- 318 (457)
T 3bz5_A 282 -AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQNP--------------------------------------- 318 (457)
T ss_dssp -CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTCT---------------------------------------
T ss_pred -ccccccCCEEECCCCcccceecc---CCCcceEechhhcc---------------------------------------
Confidence 46677888888888877776664 33455555555441
Q ss_pred cccccCCCCCCCcceeeehhccccchhhhhcccCCcccccccCCCcccceeeeceEEccCCccccccCcccccCCCccEE
Q 001384 512 MKRWIPADYPPFSFVYTILTRKSCRSLWDRLLKGTGIFPVCLPGLASRTFQITGYLQLSGNQLSGELSPDIGKLQNFSMV 591 (1088)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~l~~L~l~~N~l~g~~p~~~~~l~~L~~L 591 (1088)
.+++|++++|+|+| +| ++++++|+.|
T Consensus 319 ---------------------------------------------------~L~~L~L~~N~l~~-l~--l~~l~~L~~L 344 (457)
T 3bz5_A 319 ---------------------------------------------------KLVYLYLNNTELTE-LD--VSHNTKLKSL 344 (457)
T ss_dssp ---------------------------------------------------TCCEEECTTCCCSC-CC--CTTCTTCSEE
T ss_pred ---------------------------------------------------cCCEEECCCCcccc-cc--cccCCcCcEE
Confidence 12467888888887 43 7888888888
Q ss_pred eccccccccCCCCcccCccceEEEccCCcccccCCccccCCccCcEEEccccccCCcCCcccc
Q 001384 592 HLGFNQFDGKLPSQFDQLPLIVLNLTRNNFSGEIPSEFGNIKCLQNLDLSYNNFSGPFPASFN 654 (1088)
Q Consensus 592 ~l~~N~l~g~~p~~~~~l~l~~l~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~ 654 (1088)
++++|+|+| +| .|..|++++|+++|. +++..|+.++|++|+++|.||..+.
T Consensus 345 ~l~~N~l~~-l~------~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~ 395 (457)
T 3bz5_A 345 SCVNAHIQD-FS------SVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLL 395 (457)
T ss_dssp ECCSSCCCB-CT------TGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCB
T ss_pred ECCCCCCCC-cc------ccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHh
Confidence 888888885 32 244556777777765 3556677777777777777776543
No 146
>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=1.6e-37 Score=354.16 Aligned_cols=257 Identities=24% Similarity=0.251 Sum_probs=202.2
Q ss_pred HHHHcCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccC-----ccchHHHHHHHHHHhCCCCCCCCCceeEEeeE
Q 001384 800 ILKATGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREG-----LEGEREFRAEMEVLSGNGFGWPHPNLVTLYGW 873 (1088)
Q Consensus 800 ~~~~~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~-----~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~ 873 (1088)
+....++|++.+.||+|+||.||+|++. +++.||+|++.... ....+.+.+|++++++ ++||||++++++
T Consensus 21 ~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~----l~hpniv~~~~~ 96 (345)
T 3hko_A 21 LLELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKK----LHHPNIARLYEV 96 (345)
T ss_dssp HHHHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHH----CCCTTBCCEEEE
T ss_pred hhhhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHh----CCCCCcceeehh
Confidence 3456678999999999999999999975 68899999987542 2334678999999997 679999999999
Q ss_pred EecCCeEEEEEEecCCCCHHHHHhh----------------------------------------cCCCCHHHHHHHHHH
Q 001384 874 CLDGSEKILVYEYMEGGSLEDIISD----------------------------------------RTRLTWRRRLDIAID 913 (1088)
Q Consensus 874 ~~~~~~~~lv~e~~~~gsL~~~l~~----------------------------------------~~~l~~~~~~~i~~q 913 (1088)
+.+++..++||||+++|+|.+++.. ...+++..++.++.|
T Consensus 97 ~~~~~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~q 176 (345)
T 3hko_A 97 YEDEQYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQ 176 (345)
T ss_dssp EECSSEEEEEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHHH
T ss_pred hccCCeEEEEEeCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHH
Confidence 9999999999999999999999852 112467888999999
Q ss_pred HHHHHHHHHhcCCCCeEecCCCCCCEEEcCCC--CEEEeecccceeecCCCC---cccccccccccccCccccCC--CCC
Q 001384 914 VARALVFLHHECYPPIVHRDVKASNVLLDKEG--KALVTDFGLARVVSAGDS---HVSTTIAGTVGYVAPEYGQT--WQA 986 (1088)
Q Consensus 914 i~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~--~~kl~Dfg~a~~~~~~~~---~~~~~~~gt~~y~aPE~~~~--~~~ 986 (1088)
++.||+|||++ +|+||||||+||+++.++ .+||+|||+++.+..... .......||+.|+|||++.+ ..+
T Consensus 177 i~~~l~~LH~~---~ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~ 253 (345)
T 3hko_A 177 IFSALHYLHNQ---GICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVLNTTNESY 253 (345)
T ss_dssp HHHHHHHHHHT---TEECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC--------CCCGGGCCHHHHTCSSSCC
T ss_pred HHHHHHHHHHC---CccccCCChhhEEEecCCCceEEEeeccccccccccCccccccccccCCCccccCchhhccCCCCC
Confidence 99999999999 999999999999998776 899999999987643222 12345679999999998764 688
Q ss_pred CcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCCCCCccccchhhcCCCccccHHHHHHHHHHHhhhcccC
Q 001384 987 TTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRHGPGRAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEA 1066 (1088)
Q Consensus 987 ~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~d 1066 (1088)
+.++||||||+++|||++|+.||.+........ .......... .+........+.+++.+|++.|
T Consensus 254 ~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~--~~~~~~~~~~-------------~~~~~~~~~~~~~li~~~l~~~ 318 (345)
T 3hko_A 254 GPKCDAWSAGVLLHLLLMGAVPFPGVNDADTIS--QVLNKKLCFE-------------NPNYNVLSPLARDLLSNLLNRN 318 (345)
T ss_dssp CTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHH--HHHHCCCCTT-------------SGGGGGSCHHHHHHHHHHSCSC
T ss_pred CcHHHHHHHHHHHHHHHHCCCCCCCCChHHHHH--HHHhcccccC-------------CcccccCCHHHHHHHHHHcCCC
Confidence 999999999999999999999998765422211 1110000000 0011123457888999999999
Q ss_pred CCCCCCHHHHHH
Q 001384 1067 PNARPNVKEVLA 1078 (1088)
Q Consensus 1067 P~~RPs~~eil~ 1078 (1088)
|.+||++.|+++
T Consensus 319 p~~Rps~~~~l~ 330 (345)
T 3hko_A 319 VDERFDAMRALQ 330 (345)
T ss_dssp TTTSCCHHHHHH
T ss_pred hhHCCCHHHHhc
Confidence 999999999986
No 147
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.9e-36 Score=359.60 Aligned_cols=348 Identities=24% Similarity=0.333 Sum_probs=246.0
Q ss_pred eeEEeccccccccccccccccCCccCCeeeCCCCCCCCCcCccCCCCCCCcEEECccccccCcccCCCCCCCceeecccc
Q 001384 80 RVNGLNLTDWNISGDIFNNFSALTQLSYLDLSRNTFSGSIPDDLSSCRSLKYLNLSHNILSGDLNLSGLRSLEILDLSVN 159 (1088)
Q Consensus 80 ~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~N 159 (1088)
+++.|++.+++++.. +.+..+++|++|+|++|.+++..| +..+++|++|+|++|.+++...+.++++|++|+|++|
T Consensus 47 ~l~~L~l~~~~i~~l--~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n 122 (466)
T 1o6v_A 47 QVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNN 122 (466)
T ss_dssp TCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS
T ss_pred cccEEecCCCCCccC--cchhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChhhcCCCCCCEEECCCC
Confidence 455666666666542 236666777777777777664433 6667777777777776666555666666666666666
Q ss_pred cccccccCchhhhcccceEEeccCccCCCCCCccccCCCCCcEEEccCccccccccccCcccceecccCccccccccccc
Q 001384 160 RIHGEISFSFPAICEKLVVANLSLNNLTGRIDTCFDGCLNLRYLDLSSNNFRGNIWNGLAQLVEFSVSENVLSGVVSSSV 239 (1088)
Q Consensus 160 ~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 239 (1088)
++++..+ ...+++|++|++++|++++.. .+..+++|++|+++ | .+.+. ..
T Consensus 123 ~l~~~~~---~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~-~---------------------~~~~~---~~ 172 (466)
T 1o6v_A 123 QITDIDP---LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFG-N---------------------QVTDL---KP 172 (466)
T ss_dssp CCCCCGG---GTTCTTCSEEEEEEEEECCCG--GGTTCTTCSEEEEE-E---------------------SCCCC---GG
T ss_pred CCCCChH---HcCCCCCCEEECCCCccCCCh--hhccCCcccEeecC-C---------------------cccCc---hh
Confidence 6664432 233455555555555555432 25555555555553 2 22221 12
Q ss_pred ccCCCccCEEEcCCCcccccCcccccCCCCCcEEEccCccccCCCccccCCCCCCCEEeCCCCcCCccCcccccCCCCCc
Q 001384 240 FKENCSLEIFDLSENEFIGDFPGEVSNCRNLVVLNLFGNNFSGPIPAEIGSISGLEALFLGKNNFLSVIPESLLNLSKLE 319 (1088)
Q Consensus 240 ~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 319 (1088)
+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+..| ++.+++|+.|++++|.+.+. ..+..+++|+
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~ 246 (466)
T 1o6v_A 173 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLT 246 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCS
T ss_pred hccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCC
Confidence 56667777777777776643 246777778888888877775544 66677788888887777663 4577777888
Q ss_pred EEEcCCCcCCCchhHhhhcccccceeecCcCcccCCCCCccccCCCCcCEEEccCCccCCCCCccccCCcCcceeecccc
Q 001384 320 VLDLSSNNFGGEVQKIFGRFTQVKILALHSNSYIDGMNSSGILKLPNISRLDLSHNNFTGPLPVEISQMRSLKFLILAHN 399 (1088)
Q Consensus 320 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N 399 (1088)
+|++++|.+++..+ +..+++|+.|++++|.+.... .+..+++|+.|+|++|++++..| +..+++|+.|++++|
T Consensus 247 ~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~---~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n 319 (466)
T 1o6v_A 247 DLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS---PLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFN 319 (466)
T ss_dssp EEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCG---GGTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSS
T ss_pred EEECCCCccccchh--hhcCCCCCEEECCCCccCccc---cccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCC
Confidence 88888888777665 777778888888877754422 26678899999999999986544 788999999999999
Q ss_pred ccCCcCCcccCCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEccccccccCCCccccCCCCCCeEEccCCcCccCCCc
Q 001384 400 RFNGSIPAVYGNMPNLQTLDLSFNELTGPIPPSIGNLTSLLWLMLANNSLSGEIPGEIGNCTSLLWLNLSNNKLSGNIPP 479 (1088)
Q Consensus 400 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~ 479 (1088)
++++..| +..+++|+.|++++|++++. +.+.++++|++|++++|++++..| +..+++|+.|++++|++++ +|.
T Consensus 320 ~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~-~p~ 392 (466)
T 1o6v_A 320 NISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN-APV 392 (466)
T ss_dssp CCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC-CCB
T ss_pred cCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC-Cch
Confidence 9997665 77899999999999999964 578899999999999999998776 8999999999999999995 555
Q ss_pred hh
Q 001384 480 EV 481 (1088)
Q Consensus 480 ~~ 481 (1088)
.+
T Consensus 393 ~~ 394 (466)
T 1o6v_A 393 NY 394 (466)
T ss_dssp CC
T ss_pred hh
Confidence 43
No 148
>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*
Probab=100.00 E-value=7.9e-38 Score=347.46 Aligned_cols=255 Identities=27% Similarity=0.365 Sum_probs=205.9
Q ss_pred CCCCccc-eecccCceEEEEEEeC---CCcEEEEEEccccCcc--chHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCC
Q 001384 805 GKFSEDR-IIGKGGFGTVYRGVLP---DGREVAVKKLQREGLE--GEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGS 878 (1088)
Q Consensus 805 ~~~~~~~-~LG~G~~g~Vy~~~~~---~~~~vavK~~~~~~~~--~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~ 878 (1088)
++|++.+ .||+|+||.||+|.+. .++.||||++...... ..+.+.+|+++++. ++||||+++++++ ..+
T Consensus 16 ~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~----l~h~~i~~~~~~~-~~~ 90 (291)
T 1xbb_A 16 KLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQ----LDNPYIVRMIGIC-EAE 90 (291)
T ss_dssp GGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHT----CCCTTBCCEEEEE-ESS
T ss_pred hhhhhccCccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHh----CCCCCEEEEEEEE-CCC
Confidence 4677777 9999999999999642 4688999999865322 24678999999997 6799999999998 567
Q ss_pred eEEEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccceee
Q 001384 879 EKILVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARVV 958 (1088)
Q Consensus 879 ~~~lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~ 958 (1088)
..++||||+++++|.++++....+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++..
T Consensus 91 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~ 167 (291)
T 1xbb_A 91 SWMLVMEMAELGPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLEES---NFVHRDLAARNVLLVTQHYAKISDFGLSKAL 167 (291)
T ss_dssp SEEEEEECCTTEEHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEEECCCTTCEEC
T ss_pred CcEEEEEeCCCCCHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHhC---CeEcCCCCcceEEEeCCCcEEEccCCcceee
Confidence 7899999999999999999888899999999999999999999999 9999999999999999999999999999877
Q ss_pred cCCCCcc--cccccccccccCccccCCCCCCcchhHHHHHHHHHHHHh-CCcCCCCCchhHHHHHHhhhccCCCCCCccc
Q 001384 959 SAGDSHV--STTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELAT-GRRALEGGEECLVEWGRRVMGYGRHGPGRAV 1035 (1088)
Q Consensus 959 ~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1035 (1088)
....... .....++..|+|||.+.+..++.++||||||+++|+|++ |+.||.+...... ........
T Consensus 168 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~--~~~~~~~~-------- 237 (291)
T 1xbb_A 168 RADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEV--TAMLEKGE-------- 237 (291)
T ss_dssp CTTCSEEEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHH--HHHHHTTC--------
T ss_pred ccCCCcccccccCCCCceeeChHHhccCCCChhhhHHHHHHHHHHHHhcCCCCCCCCCHHHH--HHHHHcCC--------
Confidence 5433322 223346788999999988889999999999999999999 9999987654221 11111000
Q ss_pred cchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhhCC
Q 001384 1036 IPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKILP 1085 (1088)
Q Consensus 1036 ~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i~~ 1085 (1088)
....+...+..+.+++.+|++.||++||++.|+++.|++++.
T Consensus 238 --------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~ 279 (291)
T 1xbb_A 238 --------RMGCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNYYY 279 (291)
T ss_dssp --------CCCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHH
T ss_pred --------CCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHH
Confidence 011122334678899999999999999999999999998863
No 149
>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...
Probab=100.00 E-value=3.4e-38 Score=356.01 Aligned_cols=260 Identities=25% Similarity=0.371 Sum_probs=211.8
Q ss_pred HHcCCCCccceecccCceEEEEEEeC------CCcEEEEEEccccCc-cchHHHHHHHHHHhCCCCCCCCCceeEEeeEE
Q 001384 802 KATGKFSEDRIIGKGGFGTVYRGVLP------DGREVAVKKLQREGL-EGEREFRAEMEVLSGNGFGWPHPNLVTLYGWC 874 (1088)
Q Consensus 802 ~~~~~~~~~~~LG~G~~g~Vy~~~~~------~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~ 874 (1088)
...++|++.+.||+|+||.||+|++. +++.||||++..... .....+.+|+++++. ++||||+++++++
T Consensus 22 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~----l~h~~i~~~~~~~ 97 (322)
T 1p4o_A 22 VAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKE----FNCHHVVRLLGVV 97 (322)
T ss_dssp CCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGG----CCCTTBCCEEEEE
T ss_pred chhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHHHh----cCCCCEeeeEEEE
Confidence 44578999999999999999999864 367899999986533 234568899999987 6799999999999
Q ss_pred ecCCeEEEEEEecCCCCHHHHHhhc----------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCC
Q 001384 875 LDGSEKILVYEYMEGGSLEDIISDR----------TRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKE 944 (1088)
Q Consensus 875 ~~~~~~~lv~e~~~~gsL~~~l~~~----------~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~ 944 (1088)
.++...++||||+++|+|.++++.. ..+++.+++.++.|++.||+|||++ +|+||||||+||+++.+
T Consensus 98 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~NIli~~~ 174 (322)
T 1p4o_A 98 SQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAED 174 (322)
T ss_dssp CSSSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCSGGGEEECTT
T ss_pred ccCCccEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHHHC---CCccCCCccceEEEcCC
Confidence 9999999999999999999999753 3569999999999999999999999 99999999999999999
Q ss_pred CCEEEeecccceeecCCCCc-ccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHh-CCcCCCCCchhHHHHHHh
Q 001384 945 GKALVTDFGLARVVSAGDSH-VSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELAT-GRRALEGGEECLVEWGRR 1022 (1088)
Q Consensus 945 ~~~kl~Dfg~a~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~ellt-g~~p~~~~~~~~~~~~~~ 1022 (1088)
+.+||+|||+++........ ......+|+.|+|||++.+..++.++||||+|+++|||++ |+.||.+.... +....
T Consensus 175 ~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~--~~~~~ 252 (322)
T 1p4o_A 175 FTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNE--QVLRF 252 (322)
T ss_dssp CCEEECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCHH--HHHHH
T ss_pred CeEEECcCccccccccccccccccCCCCCCCccChhhhccCCCCchhhHHHHHHHHHHHHhcCCCccccCCHH--HHHHH
Confidence 99999999999865432221 2233457889999999988899999999999999999999 89999875432 11111
Q ss_pred hhccCCCCCCccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhhCCC
Q 001384 1023 VMGYGRHGPGRAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKILPH 1086 (1088)
Q Consensus 1023 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i~~~ 1086 (1088)
..... ....+...+..+.+++.+|++.||++||++.|+++.|+++++.
T Consensus 253 ~~~~~----------------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~e~l~~L~~~~~~ 300 (322)
T 1p4o_A 253 VMEGG----------------LLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEMEP 300 (322)
T ss_dssp HHTTC----------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHGGGSCT
T ss_pred HHcCC----------------cCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHhhcc
Confidence 11000 0011223345788899999999999999999999999998653
No 150
>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*
Probab=100.00 E-value=4.2e-37 Score=344.98 Aligned_cols=258 Identities=25% Similarity=0.415 Sum_probs=199.2
Q ss_pred cCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccC---ccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCe
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREG---LEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSE 879 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~ 879 (1088)
.++|++.+.||+|+||.||+|... +|+.||||++.... ......+.+|++++++ ++||||+++++++.+++.
T Consensus 31 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~----l~h~~i~~~~~~~~~~~~ 106 (310)
T 2wqm_A 31 LANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQ----LNHPNVIKYYASFIEDNE 106 (310)
T ss_dssp GGGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHT----CCCTTBCCEEEEEEETTE
T ss_pred ccceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHh----CCCCCEeeEEEEEEcCCc
Confidence 357999999999999999999974 78999999997532 2234578899999987 679999999999999999
Q ss_pred EEEEEEecCCCCHHHHHhh----cCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccc
Q 001384 880 KILVYEYMEGGSLEDIISD----RTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLA 955 (1088)
Q Consensus 880 ~~lv~e~~~~gsL~~~l~~----~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a 955 (1088)
.++||||+++|+|.+++.. ...+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||++
T Consensus 107 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dl~p~NIl~~~~~~~kl~Dfg~~ 183 (310)
T 2wqm_A 107 LNIVLELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMHSR---RVMHRDIKPANVFITATGVVKLGDLGLG 183 (310)
T ss_dssp EEEEEECCCSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCC---
T ss_pred EEEEEecCCCCCHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHhhC---CeeCCCCcHHHEEEcCCCCEEEEeccce
Confidence 9999999999999999864 45689999999999999999999999 9999999999999999999999999999
Q ss_pred eeecCCCCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCCCCCccc
Q 001384 956 RVVSAGDSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRHGPGRAV 1035 (1088)
Q Consensus 956 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1035 (1088)
....... .......++..|+|||.+.+..++.++||||||+++|+|++|+.||.+...................
T Consensus 184 ~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~----- 257 (310)
T 2wqm_A 184 RFFSSKT-TAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEQCDYPP----- 257 (310)
T ss_dssp ----------------CCSSCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTC---CCHHHHHHHHHTTCSCC-----
T ss_pred eeecCCC-ccccccCCCeeEeChHHhCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchhHHHHHHHhhcccCCC-----
Confidence 8654322 1223456899999999999889999999999999999999999999865433333333322111100
Q ss_pred cchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhhC
Q 001384 1036 IPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKIL 1084 (1088)
Q Consensus 1036 ~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i~ 1084 (1088)
. .......++.+++.+|++.||++||+++||++.|+++.
T Consensus 258 ---~-------~~~~~~~~l~~li~~~l~~dp~~Rps~~~il~~l~~l~ 296 (310)
T 2wqm_A 258 ---L-------PSDHYSEELRQLVNMCINPDPEKRPDVTYVYDVAKRMH 296 (310)
T ss_dssp ---C-------CTTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred ---C-------cccccCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHH
Confidence 0 01123357888999999999999999999999999874
No 151
>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A
Probab=100.00 E-value=2e-38 Score=356.76 Aligned_cols=256 Identities=23% Similarity=0.269 Sum_probs=200.1
Q ss_pred cCCCCcc-ceecccCceEEEEEEeC-CCcEEEEEEccccCccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeEE
Q 001384 804 TGKFSED-RIIGKGGFGTVYRGVLP-DGREVAVKKLQREGLEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEKI 881 (1088)
Q Consensus 804 ~~~~~~~-~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~~ 881 (1088)
.++|++. +.||+|+||.||+|++. +++.||||++..........+.+|++++.+. .+||||+++++++.+++..+
T Consensus 11 ~~~y~i~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~---~~h~~i~~~~~~~~~~~~~~ 87 (316)
T 2ac3_A 11 EDVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQC---QGHRNVLELIEFFEEEDRFY 87 (316)
T ss_dssp TTSCEECCCCCCCCSSEEEEEEECSSSCCEEEEEEEECCSSCCHHHHHHHHHHHHHT---CCCTTBCCEEEEEEETTEEE
T ss_pred ceeEEecCceecCCceEEEEEEEEcCCCcEEEEEEEeeCcchhHHHHHHHHHHHHHh---cCCCCeeeEEEEEeeCCEEE
Confidence 3568874 78999999999999965 7899999999876555667889999998763 37999999999999999999
Q ss_pred EEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCC---EEEeecccceee
Q 001384 882 LVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGK---ALVTDFGLARVV 958 (1088)
Q Consensus 882 lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~---~kl~Dfg~a~~~ 958 (1088)
+||||+++|+|.+++.....+++.+++.++.|++.||+|||++ +|+||||||+||+++.++. +||+|||++...
T Consensus 88 lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~~~~kl~Dfg~~~~~ 164 (316)
T 2ac3_A 88 LVFEKMRGGSILSHIHKRRHFNELEASVVVQDVASALDFLHNK---GIAHRDLKPENILCEHPNQVSPVKICDFDLGSGI 164 (316)
T ss_dssp EEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEESCSSSSCSEEECCTTCCC--
T ss_pred EEEEcCCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhC---CceeCCCCHHHEEEccCCCcCceEEEEccCcccc
Confidence 9999999999999999888899999999999999999999999 9999999999999998776 999999998765
Q ss_pred cCCCC------cccccccccccccCccccCC-----CCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHH----------
Q 001384 959 SAGDS------HVSTTIAGTVGYVAPEYGQT-----WQATTKGDVYSFGVLAMELATGRRALEGGEECLV---------- 1017 (1088)
Q Consensus 959 ~~~~~------~~~~~~~gt~~y~aPE~~~~-----~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~---------- 1017 (1088)
..... .......||+.|+|||++.. ..++.++||||+||++|||++|+.||.+......
T Consensus 165 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~ 244 (316)
T 2ac3_A 165 KLNGDCSPISTPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPFVGRCGSDCGWDRGEACPA 244 (316)
T ss_dssp -----------------CCSGGGCCHHHHHHTSHHHHHHTTTHHHHHHHHHHHHHHHSSCSCCCCCCSCSCC----CCHH
T ss_pred ccCCccccccccccccccCCcCccChHHhhcccccccCCCcccccHhHHHHHHHHHHCCCCCcccccccccccccccchh
Confidence 42211 11223468999999998764 4688999999999999999999999986532110
Q ss_pred ---HHHHhhhccCCCCCCccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1018 ---EWGRRVMGYGRHGPGRAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1018 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
........... ..+.. ........+.+++.+|++.||++||+++|+++
T Consensus 245 ~~~~~~~~i~~~~~------~~~~~-------~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~ 295 (316)
T 2ac3_A 245 CQNMLFESIQEGKY------EFPDK-------DWAHISCAAKDLISKLLVRDAKQRLSAAQVLQ 295 (316)
T ss_dssp HHHHHHHHHHHCCC------CCCHH-------HHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred HHHHHHHHHhccCc------ccCch-------hcccCCHHHHHHHHHHhhCChhhCCCHHHHhc
Confidence 01111110000 00000 00112457889999999999999999999986
No 152
>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=2.1e-37 Score=355.32 Aligned_cols=214 Identities=26% Similarity=0.310 Sum_probs=183.5
Q ss_pred CCccCHHHHHHHcCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCccchHHHHHHHHHHhCCCC-CCCCCceeE
Q 001384 792 KTAFTYSDILKATGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGLEGEREFRAEMEVLSGNGF-GWPHPNLVT 869 (1088)
Q Consensus 792 ~~~~~~~~~~~~~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~-~l~h~niv~ 869 (1088)
...+++.+.....++|++.+.||+|+||+||+|++. +++.||||++... ......+..|++++..+.. .+.||||++
T Consensus 22 ~~~~~~~~g~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~h~~iv~ 100 (360)
T 3llt_A 22 IVHFSWKKGMLLNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNI-KKYTRSAKIEADILKKIQNDDINNNNIVK 100 (360)
T ss_dssp GGSCCCCTTCEETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSC-HHHHHHHHHHHHHHHHTCCCSTTGGGBCC
T ss_pred ceeeeeecceEecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEeccc-hhhhhhhHHHHHHHHHhcccCCCCCCeec
Confidence 345566666667789999999999999999999975 6889999999753 2334567778888876431 235999999
Q ss_pred EeeEEecCCeEEEEEEecCCCCHHHHHhhcC--CCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcC----
Q 001384 870 LYGWCLDGSEKILVYEYMEGGSLEDIISDRT--RLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDK---- 943 (1088)
Q Consensus 870 l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~--~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~---- 943 (1088)
+++++...+..++||||+ +++|.+++.... .+++.+++.++.||+.||+|||++ +|+||||||+||+++.
T Consensus 101 ~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~~~~ 176 (360)
T 3llt_A 101 YHGKFMYYDHMCLIFEPL-GPSLYEIITRNNYNGFHIEDIKLYCIEILKALNYLRKM---SLTHTDLKPENILLDDPYFE 176 (360)
T ss_dssp EEEEEEETTEEEEEECCC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCTTCC
T ss_pred ccceeeECCeeEEEEcCC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCcccEEEcccccc
Confidence 999999999999999999 889999998754 599999999999999999999999 9999999999999975
Q ss_pred ---------------------CCCEEEeecccceeecCCCCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHH
Q 001384 944 ---------------------EGKALVTDFGLARVVSAGDSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMEL 1002 (1088)
Q Consensus 944 ---------------------~~~~kl~Dfg~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~el 1002 (1088)
++.+||+|||+++..... .....||+.|+|||++.+..++.++||||+||++|||
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el 252 (360)
T 3llt_A 177 KSLITVRRVTDGKKIQIYRTKSTGIKLIDFGCATFKSDY----HGSIINTRQYRAPEVILNLGWDVSSDMWSFGCVLAEL 252 (360)
T ss_dssp EEEEEEECTTTCCEEEEEEESCCCEEECCCTTCEETTSC----CCSCCSCGGGCCHHHHTTCCCCTTHHHHHHHHHHHHH
T ss_pred ccccchhcccccccccccccCCCCEEEEeccCceecCCC----CcCccCcccccCcHHHcCCCCCCccchHHHHHHHHHH
Confidence 789999999999864422 2345789999999999999999999999999999999
Q ss_pred HhCCcCCCCCch
Q 001384 1003 ATGRRALEGGEE 1014 (1088)
Q Consensus 1003 ltg~~p~~~~~~ 1014 (1088)
++|+.||.....
T Consensus 253 l~g~~pf~~~~~ 264 (360)
T 3llt_A 253 YTGSLLFRTHEH 264 (360)
T ss_dssp HHSSCSCCCSSH
T ss_pred HHCCCCCCCCcH
Confidence 999999987644
No 153
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*
Probab=100.00 E-value=6.3e-38 Score=369.78 Aligned_cols=247 Identities=26% Similarity=0.296 Sum_probs=196.7
Q ss_pred CCCCccceecccCceEEEEEEeC-CCcEEEEEEccccC---ccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeE
Q 001384 805 GKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREG---LEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEK 880 (1088)
Q Consensus 805 ~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~ 880 (1088)
++|++.+.||+|+||.||+|++. +|+.||||++.... ......+.+|+++++. ++||||+++++++.+.+..
T Consensus 148 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~----l~h~~iv~l~~~~~~~~~~ 223 (446)
T 4ejn_A 148 NEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQN----SRHPFLTALKYSFQTHDRL 223 (446)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCC----CSCTTSCCEEEEEEETTEE
T ss_pred HHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHh----CCCCeEeeEEEEEeeCCEE
Confidence 57999999999999999999975 68999999997642 1223456678777765 6799999999999999999
Q ss_pred EEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHh-cCCCCeEecCCCCCCEEEcCCCCEEEeecccceeec
Q 001384 881 ILVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHH-ECYPPIVHRDVKASNVLLDKEGKALVTDFGLARVVS 959 (1088)
Q Consensus 881 ~lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~-~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~~ 959 (1088)
++||||+++|+|.+++.....+++..++.++.|++.||+|||+ . +|+||||||+||+++.++.+||+|||+++...
T Consensus 224 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~---giiHrDlkp~NIll~~~~~~kl~DFG~a~~~~ 300 (446)
T 4ejn_A 224 CFVMEYANGGELFFHLSRERVFSEDRARFYGAEIVSALDYLHSEK---NVVYRDLKLENLMLDKDGHIKITDFGLCKEGI 300 (446)
T ss_dssp EEEECCCSSCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHT---CCCCCCCCGGGEEECSSSCEEECCCCCCCTTC
T ss_pred EEEEeeCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhcC---CEEECCCCHHHEEECCCCCEEEccCCCceecc
Confidence 9999999999999999988899999999999999999999998 7 99999999999999999999999999997533
Q ss_pred CCCCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCCCCCccccchh
Q 001384 960 AGDSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRHGPGRAVIPVV 1039 (1088)
Q Consensus 960 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1039 (1088)
.. ........||+.|+|||++.+..++.++||||+||++|||++|+.||.+...... ...+.....
T Consensus 301 ~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~--~~~i~~~~~----------- 366 (446)
T 4ejn_A 301 KD-GATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKL--FELILMEEI----------- 366 (446)
T ss_dssp C------CCSSSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHH--HHHHHHCCC-----------
T ss_pred CC-CcccccccCCccccCHhhcCCCCCCCccchhhhHHHHHHHhhCCCCCCCCCHHHH--HHHHHhCCC-----------
Confidence 22 2233456899999999999999999999999999999999999999987644211 111110000
Q ss_pred hcCCCccccHHHHHHHHHHHhhhcccCCCCCC-----CHHHHHH
Q 001384 1040 LLGSGLAEGAEEMSELLRIGVRCTAEAPNARP-----NVKEVLA 1078 (1088)
Q Consensus 1040 ~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RP-----s~~eil~ 1078 (1088)
..+.....++.+++.+|++.||.+|| +++|+++
T Consensus 367 ------~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~t~~ell~ 404 (446)
T 4ejn_A 367 ------RFPRTLGPEAKSLLSGLLKKDPKQRLGGGSEDAKEIMQ 404 (446)
T ss_dssp ------CCCTTSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHT
T ss_pred ------CCCccCCHHHHHHHHHHcccCHHHhCCCCCCCHHHHHh
Confidence 00112335688899999999999999 9999875
No 154
>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A
Probab=100.00 E-value=9.5e-38 Score=352.02 Aligned_cols=246 Identities=23% Similarity=0.306 Sum_probs=181.2
Q ss_pred cceecccCceEEEEEEeC-CCcEEEEEEccccCccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeEEEEEEecC
Q 001384 810 DRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGLEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEKILVYEYME 888 (1088)
Q Consensus 810 ~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~~lv~e~~~ 888 (1088)
.+.||+|+||+||+|+++ +++.||||++.+. ....+.+|+.++..+. .||||+++++++.++...|+||||++
T Consensus 16 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~e~~~l~~l~---~h~niv~~~~~~~~~~~~~lv~e~~~ 89 (325)
T 3kn6_A 16 DKPLGEGSFSICRKCVHKKSNQAFAVKIISKR---MEANTQKEITALKLCE---GHPNIVKLHEVFHDQLHTFLVMELLN 89 (325)
T ss_dssp SCCSEEETTEEEEEEEETTTCCEEEEEEEEGG---GHHHHHHHHHHHHHTT---TCTTBCCEEEEEECSSEEEEEECCCC
T ss_pred CCccccCCCeEEEEEEECCCCCEEEEEEEChh---hhhhHHHHHHHHHHhc---CCCCeeEEEEEEEcCCEEEEEEEccC
Confidence 478999999999999976 6899999999754 4467788999988742 49999999999999999999999999
Q ss_pred CCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCC---CEEEeecccceeecCCCCcc
Q 001384 889 GGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEG---KALVTDFGLARVVSAGDSHV 965 (1088)
Q Consensus 889 ~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~---~~kl~Dfg~a~~~~~~~~~~ 965 (1088)
+|+|.+++.....+++.+++.++.|++.||+|||++ +|+||||||+||+++.++ .+||+|||+++...... ..
T Consensus 90 ~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~-~~ 165 (325)
T 3kn6_A 90 GGELFERIKKKKHFSETEASYIMRKLVSAVSHMHDV---GVVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPDN-QP 165 (325)
T ss_dssp SCBHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEEC----CEEEECCCTTCEECCC-----
T ss_pred CCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CCeecCCCHHHEEEecCCCcccEEEeccccceecCCCC-Cc
Confidence 999999999988999999999999999999999999 999999999999998766 89999999998764332 23
Q ss_pred cccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCch-----hHHHHHHhhhccCCCCCCccccchhh
Q 001384 966 STTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEE-----CLVEWGRRVMGYGRHGPGRAVIPVVL 1040 (1088)
Q Consensus 966 ~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 1040 (1088)
.....||+.|+|||++.+..++.++||||+|+++|+|++|+.||..... ...+.......... . .+
T Consensus 166 ~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~i~~~~~-----~-~~--- 236 (325)
T 3kn6_A 166 LKTPCFTLHYAAPELLNQNGYDESCDLWSLGVILYTMLSGQVPFQSHDRSLTCTSAVEIMKKIKKGDF-----S-FE--- 236 (325)
T ss_dssp ------------------CCCCHHHHHHHHHHHHHHHHHSSCTTC-------CCCHHHHHHHHTTTCC-----C-CC---
T ss_pred ccccCCCcCccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCccccccccHHHHHHHHHcCCC-----C-CC---
Confidence 3445789999999999999999999999999999999999999986432 11122222210000 0 00
Q ss_pred cCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1041 LGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1041 ~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
.........++.+++.+|++.||++||+++|+++
T Consensus 237 ----~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~ 270 (325)
T 3kn6_A 237 ----GEAWKNVSQEAKDLIQGLLTVDPNKRLKMSGLRY 270 (325)
T ss_dssp ----SHHHHTSCHHHHHHHHHHHCCCTTTCCCTTTSTT
T ss_pred ----cccccCCCHHHHHHHHHHCCCChhHCCCHHHHhc
Confidence 0001123467889999999999999999998863
No 155
>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*
Probab=100.00 E-value=1.9e-37 Score=359.46 Aligned_cols=268 Identities=23% Similarity=0.277 Sum_probs=203.3
Q ss_pred cCCCCccceeccc--CceEEEEEEeC-CCcEEEEEEccccCcc--chHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCC
Q 001384 804 TGKFSEDRIIGKG--GFGTVYRGVLP-DGREVAVKKLQREGLE--GEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGS 878 (1088)
Q Consensus 804 ~~~~~~~~~LG~G--~~g~Vy~~~~~-~~~~vavK~~~~~~~~--~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~ 878 (1088)
.++|++.+.||+| +||.||+|+++ +++.||||++...... ..+.+.+|+++++. ++||||+++++++.+++
T Consensus 24 ~~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~----l~h~niv~~~~~~~~~~ 99 (389)
T 3gni_B 24 GGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKL----FNHPNIVPYRATFIADN 99 (389)
T ss_dssp GGGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHH----CCCTTBCCEEEEEEETT
T ss_pred CCcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHHh----CCCCCCCcEeEEEEECC
Confidence 3579999999999 99999999986 6899999999865322 23567889999997 67999999999999999
Q ss_pred eEEEEEEecCCCCHHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccce
Q 001384 879 EKILVYEYMEGGSLEDIISDR--TRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLAR 956 (1088)
Q Consensus 879 ~~~lv~e~~~~gsL~~~l~~~--~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~ 956 (1088)
..++||||+++|+|.+++... ..+++..++.++.||+.||+|||++ +|+||||||+||+++.++.+||+|||.+.
T Consensus 100 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~NIll~~~~~~kl~dfg~~~ 176 (389)
T 3gni_B 100 ELWVVTSFMAYGSAKDLICTHFMDGMNELAIAYILQGVLKALDYIHHM---GYVHRSVKASHILISVDGKVYLSGLRSNL 176 (389)
T ss_dssp EEEEEEECCTTCBHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCGGGCE
T ss_pred EEEEEEEccCCCCHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEcccccce
Confidence 999999999999999999775 6799999999999999999999999 99999999999999999999999999987
Q ss_pred eecCCCC------cccccccccccccCccccCC--CCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCC
Q 001384 957 VVSAGDS------HVSTTIAGTVGYVAPEYGQT--WQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGR 1028 (1088)
Q Consensus 957 ~~~~~~~------~~~~~~~gt~~y~aPE~~~~--~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~ 1028 (1088)
....... .......||..|+|||++.+ ..++.++||||+||++|||++|+.||.+.................
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~ 256 (389)
T 3gni_B 177 SMISHGQRQRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPATQMLLEKLNGTVPC 256 (389)
T ss_dssp ECEETTEECSCBCCCCTTCTTTGGGSCHHHHSTTSSCBCTHHHHHHHHHHHHHHHHSSCTTTTCCSTTHHHHC-------
T ss_pred eeccccccccccccccccccccccccCHHHHhccCCCCCcHhHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHhcCCCCc
Confidence 5432211 11223478899999998877 679999999999999999999999998754311111000000000
Q ss_pred CC-----CCccc----------------------cchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1029 HG-----PGRAV----------------------IPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1029 ~~-----~~~~~----------------------~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
.. ..... .+..........+......+.+++.+||+.||++||+++|+++
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpta~ell~ 333 (389)
T 3gni_B 257 LLDTSTIPAEELTMSPSRSVANSGLSDSLTTSTPRPSNGDSPSHPYHRTFSPHFHHFVEQCLQRNPDARPSASTLLN 333 (389)
T ss_dssp -------------------------------------------------CCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred cccccccccccccccccccccccccccccccCccccccCCCCCCccccccCHHHHHHHHHHhhcCcccCCCHHHHhc
Confidence 00 00000 0000000000112233457889999999999999999999974
No 156
>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.6e-37 Score=353.37 Aligned_cols=253 Identities=21% Similarity=0.287 Sum_probs=198.1
Q ss_pred cCCCCccceecccCceEEEEEEeCCCcEEEEEEccccCcc--chHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeEE
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLPDGREVAVKKLQREGLE--GEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEKI 881 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~--~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~~ 881 (1088)
.++|++.+.||+|+||.||+|.+.+++.||||++...... ..+.+.+|++++..+. -+||||+++++++.++...+
T Consensus 8 ~~~y~i~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~--~~~~~iv~~~~~~~~~~~~~ 85 (343)
T 3dbq_A 8 GRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQ--QHSDKIIRLYDYEITDQYIY 85 (343)
T ss_dssp SCEEEEEEEESCCSSEEEEEEECTTSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHT--TTCTTBCCEEEEEECSSEEE
T ss_pred cCEEEEEEEEecCCCeEEEEEEeCCCCEEEEEEeeccccchHHHHHHHHHHHHHHhhh--hcCCceEEEeeeEeeCCEEE
Confidence 4579999999999999999999988999999999765332 2357889999998743 12399999999999999999
Q ss_pred EEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccceeecCC
Q 001384 882 LVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARVVSAG 961 (1088)
Q Consensus 882 lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~~~~ 961 (1088)
+|||+ .+|+|.+++.....+++.+++.++.|++.||+|||++ +|+||||||+||+++ ++.+||+|||+++.....
T Consensus 86 lv~e~-~~~~L~~~l~~~~~~~~~~~~~i~~qi~~al~~lH~~---~iiHrDikp~NIll~-~~~~kl~DFG~a~~~~~~ 160 (343)
T 3dbq_A 86 MVMEC-GNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQH---GIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPD 160 (343)
T ss_dssp EEECC-CSEEHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEE-TTEEEECCCSSSCCC---
T ss_pred EEEeC-CCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCcceEEEE-CCcEEEeecccccccCcc
Confidence 99995 5779999999988999999999999999999999999 999999999999996 688999999999876543
Q ss_pred CCc-ccccccccccccCccccCC-----------CCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCC
Q 001384 962 DSH-VSTTIAGTVGYVAPEYGQT-----------WQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRH 1029 (1088)
Q Consensus 962 ~~~-~~~~~~gt~~y~aPE~~~~-----------~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~ 1029 (1088)
... ......||+.|+|||++.+ ..++.++||||+||++|||++|+.||................ ..
T Consensus 161 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~-~~- 238 (343)
T 3dbq_A 161 TTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDP-NH- 238 (343)
T ss_dssp ---------CCCCSSCCHHHHHHCC-----------CCHHHHHHHHHHHHHHHHHSSCTTTTCCSHHHHHHHHHCT-TS-
T ss_pred cccccCCCCcCCcCcCCHHHHhhccccccccccccCCCchhhHHHHHHHHHHHHhCCCcchhhhhHHHHHHHHhcC-Cc-
Confidence 222 2345679999999998754 678999999999999999999999998754433222222110 00
Q ss_pred CCCccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHH
Q 001384 1030 GPGRAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAM 1079 (1088)
Q Consensus 1030 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~ 1079 (1088)
... .+.....++.+++.+|++.||.+||++.|+++.
T Consensus 239 ---~~~-----------~~~~~~~~l~~li~~~L~~dp~~Rpt~~e~l~h 274 (343)
T 3dbq_A 239 ---EIE-----------FPDIPEKDLQDVLKCCLKRDPKQRISIPELLAH 274 (343)
T ss_dssp ---CCC-----------CCCCSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred ---ccC-----------CcccCCHHHHHHHHHHcCCChhHCCCHHHHHhC
Confidence 000 011122467889999999999999999999753
No 157
>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}
Probab=100.00 E-value=8.7e-38 Score=352.83 Aligned_cols=257 Identities=26% Similarity=0.436 Sum_probs=201.2
Q ss_pred cCCCCccceecccCceEEEEEEeC-CCcE----EEEEEccccC-ccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecC
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLP-DGRE----VAVKKLQREG-LEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDG 877 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~----vavK~~~~~~-~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~ 877 (1088)
.++|++.+.||+|+||.||+|++. +++. ||+|.+.... ....+.+.+|+.++++ ++||||+++++++..+
T Consensus 14 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~----l~hp~iv~~~~~~~~~ 89 (327)
T 3lzb_A 14 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMAS----VDNPHVCRLLGICLTS 89 (327)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTT----CCBTTBCCCCEEEESS
T ss_pred HhHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHh----CCCCCeeEEEEEEecC
Confidence 367999999999999999999965 4543 5777775432 3455788999999987 6799999999999876
Q ss_pred CeEEEEEEecCCCCHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccce
Q 001384 878 SEKILVYEYMEGGSLEDIISDR-TRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLAR 956 (1088)
Q Consensus 878 ~~~~lv~e~~~~gsL~~~l~~~-~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~ 956 (1088)
. .++|+||+.+|+|.+++... ..+++..++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++
T Consensus 90 ~-~~~v~~~~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kL~DfG~a~ 165 (327)
T 3lzb_A 90 T-VQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAK 165 (327)
T ss_dssp S-EEEEECCCSSCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEETTEEEECCTTC--
T ss_pred C-ceEEEEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhC---CCcCCCCCHHHEEEcCCCCEEEccCccee
Confidence 5 78899999999999999764 5699999999999999999999999 99999999999999999999999999998
Q ss_pred eecCCCCc-ccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHh-CCcCCCCCchhHHHHHHhhhccCCCCCCcc
Q 001384 957 VVSAGDSH-VSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELAT-GRRALEGGEECLVEWGRRVMGYGRHGPGRA 1034 (1088)
Q Consensus 957 ~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 1034 (1088)
........ ......+|..|+|||.+.+..++.++||||+|+++|||++ |+.||.+........ ....
T Consensus 166 ~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~~~--~~~~--------- 234 (327)
T 3lzb_A 166 LLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISS--ILEK--------- 234 (327)
T ss_dssp --------------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHH--HHHT---------
T ss_pred EccCccccccccCCCccccccCHHHHcCCCCChHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH--HHHc---------
Confidence 76543222 2233456789999999998899999999999999999999 999998764422111 1110
Q ss_pred ccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhhCCC
Q 001384 1035 VIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKILPH 1086 (1088)
Q Consensus 1035 ~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i~~~ 1086 (1088)
+.....+.....++.+++.+|++.||.+||++.|+++.|+++.+.
T Consensus 235 -------~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~ 279 (327)
T 3lzb_A 235 -------GERLPQPPICTIDVYMIMRKCWMIDADSRPKFRELIIEFSKMARD 279 (327)
T ss_dssp -------TCCCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHTS
T ss_pred -------CCCCCCCccCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHhC
Confidence 001111223345788899999999999999999999999998653
No 158
>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*
Probab=100.00 E-value=4.4e-37 Score=350.05 Aligned_cols=266 Identities=26% Similarity=0.355 Sum_probs=211.6
Q ss_pred HHHcCCCCccceecccCceEEEEEEeCCCcEEEEEEccccCccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCC--
Q 001384 801 LKATGKFSEDRIIGKGGFGTVYRGVLPDGREVAVKKLQREGLEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGS-- 878 (1088)
Q Consensus 801 ~~~~~~~~~~~~LG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~-- 878 (1088)
....++|++.+.||+|+||.||+|++ +++.||||++... ....+..|.+++.... ++||||+++++++....
T Consensus 38 ~~~~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~---~~~~~~~e~~~~~~~~--l~h~ni~~~~~~~~~~~~~ 111 (342)
T 1b6c_B 38 RTIARTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSR---EERSWFREAEIYQTVM--LRHENILGFIAADNKDNGT 111 (342)
T ss_dssp HHHHHHCEEEEEEEEETTEEEEEEEE-TTEEEEEEEECGG---GHHHHHHHHHHHHHSC--CCCTTBCCEEEEEECCCSS
T ss_pred ccccccEEEEeeecCCCCcEEEEEEE-cCccEEEEEeCch---hHHHHHHHHHHHHHhh--cCCCcEEEEEeeecccCCc
Confidence 34557899999999999999999998 4899999999754 3456778888887643 68999999999998876
Q ss_pred --eEEEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHH--------hcCCCCeEecCCCCCCEEEcCCCCEE
Q 001384 879 --EKILVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLH--------HECYPPIVHRDVKASNVLLDKEGKAL 948 (1088)
Q Consensus 879 --~~~lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH--------~~~~~~ivH~DLkp~NIll~~~~~~k 948 (1088)
..++||||+++|+|.+++++. ++++.+++.++.|++.||+||| +. +|+||||||+||+++.++.+|
T Consensus 112 ~~~~~lv~e~~~~g~L~~~l~~~-~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~---~ivH~Dlkp~NIll~~~~~~k 187 (342)
T 1b6c_B 112 WTQLWLVSDYHEHGSLFDYLNRY-TVTVEGMIKLALSTASGLAHLHMEIVGTQGKP---AIAHRDLKSKNILVKKNGTCC 187 (342)
T ss_dssp CCCEEEEECCCTTCBHHHHHHHC-CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBC---EEECSCCSGGGEEECTTSCEE
T ss_pred cceeEEEEeecCCCcHHHHHhcc-CccHHHHHHHHHHHHHHHHHHHHHHhhhcccC---CeeeCCCCHHHEEECCCCCEE
Confidence 789999999999999999764 6899999999999999999999 66 999999999999999999999
Q ss_pred EeecccceeecCCCCc---ccccccccccccCccccCCC------CCCcchhHHHHHHHHHHHHhC----------CcCC
Q 001384 949 VTDFGLARVVSAGDSH---VSTTIAGTVGYVAPEYGQTW------QATTKGDVYSFGVLAMELATG----------RRAL 1009 (1088)
Q Consensus 949 l~Dfg~a~~~~~~~~~---~~~~~~gt~~y~aPE~~~~~------~~~~~~DvwslG~~l~elltg----------~~p~ 1009 (1088)
|+|||+++........ ......||+.|+|||++.+. .++.++||||||+++|||++| +.||
T Consensus 188 L~Dfg~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~p~ 267 (342)
T 1b6c_B 188 IADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPY 267 (342)
T ss_dssp ECCCTTCEEEETTTTEEEECCCSCCCCGGGCCHHHHTSCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTT
T ss_pred EEECCCceeccccccccccccccCCcCcccCCHhhhcccccccccccCCcccHHHHHHHHHHHHhccCcCCcccccccCc
Confidence 9999999877644322 22445789999999988765 234789999999999999999 7788
Q ss_pred CCCch---hHHHHHHhhhccCCCCCCccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhhCCC
Q 001384 1010 EGGEE---CLVEWGRRVMGYGRHGPGRAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKILPH 1086 (1088)
Q Consensus 1010 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i~~~ 1086 (1088)
..... ....+......... ....+.. .........+.+++.+|++.||++||++.||++.|+++.++
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~------~~~~~~~~~l~~li~~cl~~dp~~Rps~~~i~~~L~~i~~~ 337 (342)
T 1b6c_B 268 YDLVPSDPSVEEMRKVVCEQKL----RPNIPNR------WQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQ 337 (342)
T ss_dssp TTTSCSSCCHHHHHHHHTTSCC----CCCCCGG------GGTSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred cccCcCcccHHHHHHHHHHHHh----CCCCccc------ccchhHHHHHHHHHHHHhccChhhCCCHHHHHHHHHHHHHH
Confidence 65422 22233222221100 0001100 01235677899999999999999999999999999998654
No 159
>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*
Probab=100.00 E-value=3.5e-38 Score=354.27 Aligned_cols=263 Identities=27% Similarity=0.441 Sum_probs=199.9
Q ss_pred HHHHHcCCCCccceecccCceEEEEEEeC----CCcEEEEEEccccCcc--chHHHHHHHHHHhCCCCCCCCCceeEEee
Q 001384 799 DILKATGKFSEDRIIGKGGFGTVYRGVLP----DGREVAVKKLQREGLE--GEREFRAEMEVLSGNGFGWPHPNLVTLYG 872 (1088)
Q Consensus 799 ~~~~~~~~~~~~~~LG~G~~g~Vy~~~~~----~~~~vavK~~~~~~~~--~~~~~~~E~~~l~~~~~~l~h~niv~l~~ 872 (1088)
++....++|.+.+.||+|+||.||+|.+. .++.||||++...... ..+.+.+|+.++++ ++||||+++++
T Consensus 28 ~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~----l~h~~iv~~~~ 103 (313)
T 3brb_A 28 DVVIDRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKD----FSHPNVIRLLG 103 (313)
T ss_dssp TTBCCGGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHT----CCCTTBCCCCE
T ss_pred hcccCHHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhc----CCCCCeeeeeE
Confidence 33344578999999999999999999864 3458999999765322 23568899999997 67999999999
Q ss_pred EEecCC-----eEEEEEEecCCCCHHHHHh------hcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEE
Q 001384 873 WCLDGS-----EKILVYEYMEGGSLEDIIS------DRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLL 941 (1088)
Q Consensus 873 ~~~~~~-----~~~lv~e~~~~gsL~~~l~------~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll 941 (1088)
++.+.. ..++||||+++|+|.+++. ....+++.+++.++.|++.||+|||++ +|+||||||+||++
T Consensus 104 ~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dikp~NIli 180 (313)
T 3brb_A 104 VCIEMSSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSNR---NFLHRDLAARNCML 180 (313)
T ss_dssp EEEC-------CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHHTT---TCCCCCCSGGGEEE
T ss_pred EEeeccccCCcccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCcceEEE
Confidence 998755 3499999999999999984 334699999999999999999999999 99999999999999
Q ss_pred cCCCCEEEeecccceeecCCCCc-ccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHh-CCcCCCCCchhHHHH
Q 001384 942 DKEGKALVTDFGLARVVSAGDSH-VSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELAT-GRRALEGGEECLVEW 1019 (1088)
Q Consensus 942 ~~~~~~kl~Dfg~a~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~ellt-g~~p~~~~~~~~~~~ 1019 (1088)
+.++.+||+|||+++........ ......+++.|+|||.+.+..++.++||||||+++|+|++ |..||........
T Consensus 181 ~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~-- 258 (313)
T 3brb_A 181 RDDMTVCVADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGMTPYPGVQNHEM-- 258 (313)
T ss_dssp CTTSCEEECSCSCC----------------CCGGGSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGH--
T ss_pred cCCCcEEEeecCcceecccccccCcccccCCCccccCchhhcCCCccchhhhHHHHHHHHHHHhcCCCCCccCCHHHH--
Confidence 99999999999999876543322 2234467889999999999899999999999999999999 8889976543211
Q ss_pred HHhhhccCCCCCCccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhhCCC
Q 001384 1020 GRRVMGYGRHGPGRAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKILPH 1086 (1088)
Q Consensus 1020 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i~~~ 1086 (1088)
...... +.....+...+..+.+++.+|++.||++||++.|+++.|+++++.
T Consensus 259 ~~~~~~----------------~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~l~~~ 309 (313)
T 3brb_A 259 YDYLLH----------------GHRLKQPEDCLDELYEIMYSCWRTDPLDRPTFSVLRLQLEKLLES 309 (313)
T ss_dssp HHHHHT----------------TCCCCCBTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HHHHHc----------------CCCCCCCccccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHh
Confidence 111110 001111223346788999999999999999999999999998653
No 160
>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...
Probab=100.00 E-value=3.3e-37 Score=342.01 Aligned_cols=259 Identities=27% Similarity=0.416 Sum_probs=195.7
Q ss_pred cCCCCccceecccCceEEEEEEeCCCcEEEEEEccccCcc--chHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeEE
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLPDGREVAVKKLQREGLE--GEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEKI 881 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~--~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~~ 881 (1088)
.++|++.+.||+|+||+||+|++. ..||||++...... ..+.+.+|++++++ ++||||+++++++ .....+
T Consensus 23 ~~~y~~~~~lG~G~~g~Vy~~~~~--~~vavK~~~~~~~~~~~~~~~~~E~~~l~~----l~h~~iv~~~~~~-~~~~~~ 95 (289)
T 3og7_A 23 DGQITVGQRIGSGSFGTVYKGKWH--GDVAVKMLNVTAPTPQQLQAFKNEVGVLRK----TRHVNILLFMGYS-TAPQLA 95 (289)
T ss_dssp TTSCEEEEEEEECSSEEEEEEESS--SEEEEEEESCSSCCHHHHHHHHHHHHHHTT----CCCTTBCCEEEEE-CSSSCE
T ss_pred ccceeeeeEecCCCCeEEEEEEEc--CceEEEEEeccCCCHHHHHHHHHHHHHHHh----CCCCcEEEEEeec-cCCccE
Confidence 468999999999999999999974 35999999765322 33578899999987 6799999999965 456689
Q ss_pred EEEEecCCCCHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccceeecC
Q 001384 882 LVYEYMEGGSLEDIISD-RTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARVVSA 960 (1088)
Q Consensus 882 lv~e~~~~gsL~~~l~~-~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~~~ 960 (1088)
+||||+++++|.+++.. ...+++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++....
T Consensus 96 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~lH~~---~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~ 172 (289)
T 3og7_A 96 IVTQWCEGSSLYHHLHASETKFEMKKLIDIARQTARGMDYLHAK---SIIHRDLKSNNIFLHEDNTVKIGDFGLATEKSR 172 (289)
T ss_dssp EEEECCCEEEHHHHHTTC---CCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEETTTEEEECCCC-------
T ss_pred EEEEecCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhC---CcccccCccceEEECCCCCEEEccceecccccc
Confidence 99999999999999964 45699999999999999999999999 999999999999999999999999999976543
Q ss_pred CC-CcccccccccccccCccccC---CCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCCCCCcccc
Q 001384 961 GD-SHVSTTIAGTVGYVAPEYGQ---TWQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRHGPGRAVI 1036 (1088)
Q Consensus 961 ~~-~~~~~~~~gt~~y~aPE~~~---~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1036 (1088)
.. ........||+.|+|||.+. ...++.++||||+|+++|+|++|+.||........ ...............
T Consensus 173 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~-~~~~~~~~~~~~~~~--- 248 (289)
T 3og7_A 173 WSGSHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQ-IIEMVGRGSLSPDLS--- 248 (289)
T ss_dssp -----------CCCTTCCHHHHC----CCSCHHHHHHHHHHHHHHHHHSSCTTSSCCCHHH-HHHHHHHTSCCCCTT---
T ss_pred ccccccccccCCCccccCchhhcccCCCCCCcccchHHHHHHHHHHHHCCCCccccchHHH-HHHHhcccccCcchh---
Confidence 22 22234457899999999876 66788999999999999999999999987543211 111111000000000
Q ss_pred chhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhhCC
Q 001384 1037 PVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKILP 1085 (1088)
Q Consensus 1037 ~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i~~ 1085 (1088)
......+.++.+++.+|++.||++||+++|+++.|+++.+
T Consensus 249 ---------~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~l~~ 288 (289)
T 3og7_A 249 ---------KVRSNCPKRMKRLMAECLKKKRDERPSFPRILAEIEELAR 288 (289)
T ss_dssp ---------SSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTC
T ss_pred ---------hccccCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHHhh
Confidence 0112334678899999999999999999999999999875
No 161
>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=6.8e-38 Score=354.66 Aligned_cols=243 Identities=24% Similarity=0.296 Sum_probs=203.9
Q ss_pred HcCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCcc--------chHHHHHHHHHHhCCCCCCCCCceeEEeeE
Q 001384 803 ATGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGLE--------GEREFRAEMEVLSGNGFGWPHPNLVTLYGW 873 (1088)
Q Consensus 803 ~~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~--------~~~~~~~E~~~l~~~~~~l~h~niv~l~~~ 873 (1088)
..++|++.+.||+|+||.||+|++. +++.||||++...... ....+.+|++++++ ++||||++++++
T Consensus 22 ~~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~----l~h~~Iv~~~~~ 97 (335)
T 3dls_A 22 YSQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSR----VEHANIIKVLDI 97 (335)
T ss_dssp HHHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTT----CCCTTBCCEEEE
T ss_pred cccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHh----CCCCCEeeEEEE
Confidence 3467999999999999999999965 6889999999865321 22356789999987 679999999999
Q ss_pred EecCCeEEEEEEecCCC-CHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeec
Q 001384 874 CLDGSEKILVYEYMEGG-SLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDF 952 (1088)
Q Consensus 874 ~~~~~~~~lv~e~~~~g-sL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Df 952 (1088)
+.+.+..++||||+.+| +|.+++.....+++..++.++.|++.||+|||++ +|+||||||+||+++.++.+||+||
T Consensus 98 ~~~~~~~~lv~e~~~~g~~l~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~Df 174 (335)
T 3dls_A 98 FENQGFFQLVMEKHGSGLDLFAFIDRHPRLDEPLASYIFRQLVSAVGYLRLK---DIIHRDIKDENIVIAEDFTIKLIDF 174 (335)
T ss_dssp EECSSEEEEEEECCTTSCBHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCC
T ss_pred EeeCCEEEEEEEeCCCCccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CeEEeccCHHHEEEcCCCcEEEeec
Confidence 99999999999999777 9999999988999999999999999999999999 9999999999999999999999999
Q ss_pred ccceeecCCCCcccccccccccccCccccCCCCC-CcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCCCC
Q 001384 953 GLARVVSAGDSHVSTTIAGTVGYVAPEYGQTWQA-TTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRHGP 1031 (1088)
Q Consensus 953 g~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~ 1031 (1088)
|+++...... ......||+.|+|||++.+..+ +.++||||+|+++|+|++|+.||....+. . ..
T Consensus 175 g~a~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~--------~--~~--- 239 (335)
T 3dls_A 175 GSAAYLERGK--LFYTFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVFEENPFCELEET--------V--EA--- 239 (335)
T ss_dssp TTCEECCTTC--CBCEECSCGGGCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSCSSGGGG--------T--TT---
T ss_pred ccceECCCCC--ceeccCCCccccChhhhcCCCCCCCcccchhHHHHHHHHHhCCCchhhHHHH--------H--hh---
Confidence 9998765432 2344678999999999887776 88999999999999999999999763220 0 00
Q ss_pred CccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHH
Q 001384 1032 GRAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAM 1079 (1088)
Q Consensus 1032 ~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~ 1079 (1088)
. . ..+.....++.+++.+|++.||++||+++|+++.
T Consensus 240 -~--~---------~~~~~~~~~l~~li~~~L~~dP~~Rps~~ell~h 275 (335)
T 3dls_A 240 -A--I---------HPPYLVSKELMSLVSGLLQPVPERRTTLEKLVTD 275 (335)
T ss_dssp -C--C---------CCSSCCCHHHHHHHHHHTCSSGGGSCCHHHHHHC
T ss_pred -c--c---------CCCcccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence 0 0 0011123568889999999999999999999873
No 162
>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*
Probab=100.00 E-value=7.4e-38 Score=372.74 Aligned_cols=248 Identities=28% Similarity=0.353 Sum_probs=205.6
Q ss_pred CCCCccceecccCceEEEEEEeC-CCcEEEEEEccccC---ccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeE
Q 001384 805 GKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREG---LEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEK 880 (1088)
Q Consensus 805 ~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~ 880 (1088)
++|++.++||+|+||.||+|+.+ +|+.||||++.+.. ......+.+|++++.. ++||||+++++++.+.+..
T Consensus 184 ~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~----l~hp~Iv~l~~~~~~~~~l 259 (576)
T 2acx_A 184 NTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEK----VNSRFVVSLAYAYETKDAL 259 (576)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHH----CCCTTBCCEEEEEECSSEE
T ss_pred cceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHH----cCCCCEeeEEEEEeeCCEE
Confidence 46888999999999999999976 78999999997642 2334568899999987 6799999999999999999
Q ss_pred EEEEEecCCCCHHHHHhhcCC--CCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccceee
Q 001384 881 ILVYEYMEGGSLEDIISDRTR--LTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARVV 958 (1088)
Q Consensus 881 ~lv~e~~~~gsL~~~l~~~~~--l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~ 958 (1088)
|+||||++||+|.+++..... +++..++.++.||+.||+|||++ +||||||||+||+++.++.+||+|||+++..
T Consensus 260 ~lVmEy~~gg~L~~~l~~~~~~~l~e~~~~~i~~qIl~aL~yLH~~---gIvHrDLKPeNILld~~g~vKL~DFGla~~~ 336 (576)
T 2acx_A 260 CLVLTLMNGGDLKFHIYHMGQAGFPEARAVFYAAEICCGLEDLHRE---RIVYRDLKPENILLDDHGHIRISDLGLAVHV 336 (576)
T ss_dssp EEEECCCCSCBHHHHHHSSSSCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEECCCTTCEEC
T ss_pred EEEEEcCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHC---CEeccCCchheEEEeCCCCeEEEecccceec
Confidence 999999999999999977543 99999999999999999999999 9999999999999999999999999999876
Q ss_pred cCCCCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCch--hHHHHHHhhhccCCCCCCcccc
Q 001384 959 SAGDSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEE--CLVEWGRRVMGYGRHGPGRAVI 1036 (1088)
Q Consensus 959 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 1036 (1088)
.... ......||+.|+|||++.+..++.++||||+||++|||++|+.||.+... ...+..........
T Consensus 337 ~~~~--~~~~~~GT~~Y~APEvl~~~~~~~~~DiwSLGvilyeLltG~~PF~~~~~~~~~~~i~~~i~~~~~-------- 406 (576)
T 2acx_A 337 PEGQ--TIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVERLVKEVPE-------- 406 (576)
T ss_dssp CTTC--CEECCCSCGGGCCHHHHTTCEESSHHHHHHHHHHHHHHHHSSCSSSCSSSCCCHHHHHHHHHHCCC--------
T ss_pred ccCc--cccccCCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCcccccchhHHHHHHHhhcccc--------
Confidence 5332 23345799999999999998999999999999999999999999987532 11122222211110
Q ss_pred chhhcCCCccccHHHHHHHHHHHhhhcccCCCCCC-----CHHHHHH
Q 001384 1037 PVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARP-----NVKEVLA 1078 (1088)
Q Consensus 1037 ~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RP-----s~~eil~ 1078 (1088)
..+.....++.+++.+|++.||++|| +++||++
T Consensus 407 ---------~~p~~~s~~~~dLI~~lL~~dP~~R~g~~~~sa~eil~ 444 (576)
T 2acx_A 407 ---------EYSERFSPQARSLCSQLLCKDPAERLGCRGGSAREVKE 444 (576)
T ss_dssp ---------CCCTTSCHHHHHHHHHHTCSSGGGSTTCSSSHHHHHHT
T ss_pred ---------cCCccCCHHHHHHHHHhccCCHHHcCCCCCCCHHHHHh
Confidence 01122345788899999999999999 6788864
No 163
>3gxj_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3hmm_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=100.00 E-value=7.6e-39 Score=357.94 Aligned_cols=262 Identities=27% Similarity=0.364 Sum_probs=190.8
Q ss_pred CCCCccceecccCceEEEEEEeCCCcEEEEEEccccCccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCC----eE
Q 001384 805 GKFSEDRIIGKGGFGTVYRGVLPDGREVAVKKLQREGLEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGS----EK 880 (1088)
Q Consensus 805 ~~~~~~~~LG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~----~~ 880 (1088)
++|++.+.||+|+||.||+|++. ++.||||++... ....+..|.+++.... ++||||+++++++.... ..
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~---~~~~~~~e~~~~~~~~--~~h~~i~~~~~~~~~~~~~~~~~ 76 (303)
T 3gxj_A 3 RTIVLQESIGKGRFGEVWRGKWR-GEEVAVKIFSSR---EERSWFREAEIYQTVM--LRHENILGFIAADNKDNGTWTQL 76 (303)
T ss_dssp GGCCCCEEEEECSSSEEEEC-CT-TSCEEEEECC-T---THHHHHHHHHHHTSTT--CCC-CBCCEEEEEEEECSSSEEE
T ss_pred ceeeehhhccCCCCeEEEEEEEc-CcceEEEEeccc---chhhHHHHHHHHHHHh--ccCcceeeeeeecccCCCcccee
Confidence 57999999999999999999875 899999998754 3456777888887643 68999999999998776 78
Q ss_pred EEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHH--------hcCCCCeEecCCCCCCEEEcCCCCEEEeec
Q 001384 881 ILVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLH--------HECYPPIVHRDVKASNVLLDKEGKALVTDF 952 (1088)
Q Consensus 881 ~lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH--------~~~~~~ivH~DLkp~NIll~~~~~~kl~Df 952 (1088)
++||||+++|+|.+++++. .+++.+++.++.|++.||+||| +. +|+||||||+||+++.++.+||+||
T Consensus 77 ~lv~e~~~~g~L~~~l~~~-~~~~~~~~~~~~~i~~~l~~lH~~~~~~~~~~---~ivH~Dlkp~Nil~~~~~~~kl~DF 152 (303)
T 3gxj_A 77 WLVSDYHEHGSLFDYLNRY-TVTVEGMIKLALSTASGLAHLHMEIVGTQGKP---AIAHRDLKSKNILVKKNGTCCIADL 152 (303)
T ss_dssp EEEEECCTTCCHHHHHHHC-CBCC-CHHHHC-CHHHHHC-CCCCBCSTTCBC----CCCSCCCGGGC-CCTTCCC-BCCC
T ss_pred EEEEeccCCCCHHHHHhcc-CcchHHHHHHHHHHHHHHHHHHHHHhhhccCC---CEeeCcCCHHHeEECCCCCEEEeec
Confidence 9999999999999999664 6899999999999999999999 77 9999999999999999999999999
Q ss_pred ccceeecCCCCcc---cccccccccccCccccCCC------CCCcchhHHHHHHHHHHHHhC----------CcCCCCCc
Q 001384 953 GLARVVSAGDSHV---STTIAGTVGYVAPEYGQTW------QATTKGDVYSFGVLAMELATG----------RRALEGGE 1013 (1088)
Q Consensus 953 g~a~~~~~~~~~~---~~~~~gt~~y~aPE~~~~~------~~~~~~DvwslG~~l~elltg----------~~p~~~~~ 1013 (1088)
|+++......... .....||+.|+|||++.+. .++.++||||||+++|||++| +.||....
T Consensus 153 g~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~~~~~p~~~~~ 232 (303)
T 3gxj_A 153 GLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLV 232 (303)
T ss_dssp CC-CCEETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHC-CCCC-CTGGGBCBTTBC-CCCCTTTTTC
T ss_pred CcceeccCCCcccccccCCCCcCccccCHhhhcCcccccccccCcchhHHHHHHHHHHHHhcCCCccccceeeccccccC
Confidence 9998765433221 2334799999999988765 444689999999999999999 55554321
Q ss_pred h---hHHHHHHhhhccCCCCCCccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhhCCC
Q 001384 1014 E---CLVEWGRRVMGYGRHGPGRAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKILPH 1086 (1088)
Q Consensus 1014 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i~~~ 1086 (1088)
. ...+....... .......+. ..........+.+++.+|++.||++||+++||++.|+++.+.
T Consensus 233 ~~~~~~~~~~~~~~~----~~~~~~~~~------~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~l~~~ 298 (303)
T 3gxj_A 233 PSDPSVEEMRKVVCE----QKLRPNIPN------RWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQ 298 (303)
T ss_dssp C-CCCCC-CHHHHTT----SCCCCCCCG------GGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHC-CCC
T ss_pred CCCccHHHHHHHHHH----hhcCCCccc------cccchhhHHHHHHHHHHHhccCcccCCCHHHHHHHHHHhhhh
Confidence 1 00000000000 000000000 001236677899999999999999999999999999999765
No 164
>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=1.2e-37 Score=345.21 Aligned_cols=255 Identities=24% Similarity=0.325 Sum_probs=207.1
Q ss_pred CCCCccc-eecccCceEEEEEEeC---CCcEEEEEEccccCc-cchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCe
Q 001384 805 GKFSEDR-IIGKGGFGTVYRGVLP---DGREVAVKKLQREGL-EGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSE 879 (1088)
Q Consensus 805 ~~~~~~~-~LG~G~~g~Vy~~~~~---~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~ 879 (1088)
++|.+.+ .||+|+||.||+|.+. +++.||||++..... ...+.+.+|++++.. ++||||+++++++ ..+.
T Consensus 9 ~~~~i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~----l~h~~i~~~~~~~-~~~~ 83 (287)
T 1u59_A 9 DNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQ----LDNPYIVRLIGVC-QAEA 83 (287)
T ss_dssp GGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHH----CCCTTBCCEEEEE-ESSS
T ss_pred HHhhhhhccccccCceeEEEeEeccCCCcceEEEEecCCccchhHHHHHHHHHHHHHh----CCCCCEeEEEEEe-cCCC
Confidence 4566665 9999999999999854 577899999987532 334678899999997 6799999999999 4566
Q ss_pred EEEEEEecCCCCHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccceee
Q 001384 880 KILVYEYMEGGSLEDIISDR-TRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARVV 958 (1088)
Q Consensus 880 ~~lv~e~~~~gsL~~~l~~~-~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~ 958 (1088)
.++||||+++++|.+++... ..+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++..
T Consensus 84 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~ 160 (287)
T 1u59_A 84 LMLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEK---NFVHRDLAARNVLLVNRHYAKISDFGLSKAL 160 (287)
T ss_dssp EEEEEECCTTEEHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEEETTEEEECCCTTCEEC
T ss_pred cEEEEEeCCCCCHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHC---CEeeCCCchheEEEcCCCCEEECcccceeee
Confidence 89999999999999999654 4699999999999999999999999 9999999999999999999999999999887
Q ss_pred cCCCCcc--cccccccccccCccccCCCCCCcchhHHHHHHHHHHHHh-CCcCCCCCchhHHHHHHhhhccCCCCCCccc
Q 001384 959 SAGDSHV--STTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELAT-GRRALEGGEECLVEWGRRVMGYGRHGPGRAV 1035 (1088)
Q Consensus 959 ~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1035 (1088)
....... .....+|+.|+|||.+.+..++.++||||+|+++|||++ |+.||....... ........
T Consensus 161 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~--~~~~i~~~--------- 229 (287)
T 1u59_A 161 GADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPE--VMAFIEQG--------- 229 (287)
T ss_dssp TTCSCEECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCTHH--HHHHHHTT---------
T ss_pred ccCcceeeccccccccccccCHHHhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCCHHH--HHHHHhcC---------
Confidence 5433222 223456889999999988889999999999999999998 999998754321 11111100
Q ss_pred cchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhhCC
Q 001384 1036 IPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKILP 1085 (1088)
Q Consensus 1036 ~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i~~ 1085 (1088)
.....+...+.++.+++.+|++.||++||++.|+++.|++++.
T Consensus 230 -------~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~ 272 (287)
T 1u59_A 230 -------KRMECPPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRACYY 272 (287)
T ss_dssp -------CCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred -------CcCCCCCCcCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHH
Confidence 0011122344678899999999999999999999999998853
No 165
>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}
Probab=100.00 E-value=5.1e-38 Score=357.78 Aligned_cols=264 Identities=19% Similarity=0.260 Sum_probs=200.7
Q ss_pred cCCCCccceecccCceEEEEEEeC----CCcEEEEEEccccCcc-----------chHHHHHHHHHHhCCCCCCCCCcee
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLP----DGREVAVKKLQREGLE-----------GEREFRAEMEVLSGNGFGWPHPNLV 868 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~----~~~~vavK~~~~~~~~-----------~~~~~~~E~~~l~~~~~~l~h~niv 868 (1088)
.++|++.+.||+|+||.||+|++. ++..||||+....... ....+.+|+..+.. +.||||+
T Consensus 36 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~----l~h~ni~ 111 (345)
T 2v62_A 36 GNQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQ----LDYLGIP 111 (345)
T ss_dssp SCEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHT----CSCCCCC
T ss_pred CceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhcc----ccccCcc
Confidence 367999999999999999999975 5678999998765321 11335566777775 6899999
Q ss_pred EEeeEEec----CCeEEEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCC
Q 001384 869 TLYGWCLD----GSEKILVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKE 944 (1088)
Q Consensus 869 ~l~~~~~~----~~~~~lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~ 944 (1088)
++++++.. ....++||||+ +++|.+++.....+++.+++.++.||+.||+|||++ +|+||||||+||+++.+
T Consensus 112 ~~~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~ 187 (345)
T 2v62_A 112 LFYGSGLTEFKGRSYRFMVMERL-GIDLQKISGQNGTFKKSTVLQLGIRMLDVLEYIHEN---EYVHGDIKAANLLLGYK 187 (345)
T ss_dssp CEEEEEEEESSSCEEEEEEEECE-EEEHHHHCBGGGBCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEESS
T ss_pred eeecccccccCCCcEEEEEEecc-CCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCcCHHHEEEccC
Confidence 99999987 77899999999 899999998887899999999999999999999999 99999999999999988
Q ss_pred C--CEEEeecccceeecCCCC------cccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCch--
Q 001384 945 G--KALVTDFGLARVVSAGDS------HVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEE-- 1014 (1088)
Q Consensus 945 ~--~~kl~Dfg~a~~~~~~~~------~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~-- 1014 (1088)
+ .+||+|||+++.+..... .......||..|+|||++.+..++.++|||||||++|||++|+.||.+...
T Consensus 188 ~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~ 267 (345)
T 2v62_A 188 NPDQVYLADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLDAHKGVALSRRSDVEILGYCMLRWLCGKLPWEQNLKDP 267 (345)
T ss_dssp STTSEEECCCTTCEESSGGGCCCCCCCCGGGCSCSCTTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCTTGGGTTCH
T ss_pred CCCcEEEEeCCCceecccccccccchhccccccCCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCcccccccc
Confidence 7 999999999987643221 112445789999999999998999999999999999999999999965322
Q ss_pred hHHHHHHhhhccCCCCCCccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhhCC
Q 001384 1015 CLVEWGRRVMGYGRHGPGRAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKILP 1085 (1088)
Q Consensus 1015 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i~~ 1085 (1088)
........... ...+....... .....+.++.+++.+|++.||++||++++|++.|+++..
T Consensus 268 ~~~~~~~~~~~--------~~~~~~~~~~~--~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~ 328 (345)
T 2v62_A 268 VAVQTAKTNLL--------DELPQSVLKWA--PSGSSCCEIAQFLVCAHSLAYDEKPNYQALKKILNPHGI 328 (345)
T ss_dssp HHHHHHHHHHH--------HTTTHHHHHHS--CTTSCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHCTTCC
T ss_pred HHHHHHHHhhc--------ccccHHHHhhc--cccccHHHHHHHHHHHhhcCcccCCCHHHHHHHHhccCC
Confidence 11111111110 00000000000 001234578899999999999999999999999998643
No 166
>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=100.00 E-value=8.2e-37 Score=342.27 Aligned_cols=269 Identities=26% Similarity=0.315 Sum_probs=201.4
Q ss_pred HcCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCc-----cchHHHHHHHHHHhCCCCCCCCCceeEEeeEEec
Q 001384 803 ATGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGL-----EGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLD 876 (1088)
Q Consensus 803 ~~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~-----~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~ 876 (1088)
..++|++.+.||+|+||+||+|++. +++.||||++..... .....+.+|+++++.+. .+.||||+++++++..
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~-~~~h~niv~~~~~~~~ 85 (308)
T 3g33_A 7 ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLE-AFEHPNVVRLMDVCAT 85 (308)
T ss_dssp ---CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHH-HHCCTTBCCEEEEEEE
T ss_pred cccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHh-hcCCCCeEEeeeeeec
Confidence 4678999999999999999999974 789999999975321 12345667777766532 2359999999999987
Q ss_pred CC-----eEEEEEEecCCCCHHHHHhhcCC--CCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEE
Q 001384 877 GS-----EKILVYEYMEGGSLEDIISDRTR--LTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALV 949 (1088)
Q Consensus 877 ~~-----~~~lv~e~~~~gsL~~~l~~~~~--l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl 949 (1088)
.. ..++||||++ |+|.+++..... +++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+||
T Consensus 86 ~~~~~~~~~~lv~e~~~-~~L~~~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~Nil~~~~~~~kl 161 (308)
T 3g33_A 86 SRTDREIKVTLVFEHVD-QDLRTYLDKAPPPGLPAETIKDLMRQFLRGLDFLHAN---CIVHRDLKPENILVTSGGTVKL 161 (308)
T ss_dssp CCSSSEEEEEEEEECCC-CBHHHHHHTCCTTCSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCTTTEEECTTSCEEE
T ss_pred cCCCCceeEEEEehhhh-cCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEcCCCCEEE
Confidence 55 5799999997 599999987654 99999999999999999999999 9999999999999999999999
Q ss_pred eecccceeecCCCCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhH-HHHHHhhhccCC
Q 001384 950 TDFGLARVVSAGDSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEECL-VEWGRRVMGYGR 1028 (1088)
Q Consensus 950 ~Dfg~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~-~~~~~~~~~~~~ 1028 (1088)
+|||+++..... .......||+.|+|||++.+..++.++||||+||++|||++|+.||.+..+.. ............
T Consensus 162 ~Dfg~a~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~ 239 (308)
T 3g33_A 162 ADFGLARIYSYQ--MALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEADQLGKIFDLIGLPP 239 (308)
T ss_dssp CSCSCTTTSTTC--CCSGGGGCCCSSCCHHHHHTSCCCSTHHHHHHHHHHHHTTTSSCSCCCSSHHHHHHHHHHHHCCCC
T ss_pred eeCccccccCCC--cccCCccccccccCchHHcCCCCCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCC
Confidence 999999765432 22345678999999999988899999999999999999999999998765421 111111111111
Q ss_pred CC--CCccccchhhcCCCcc-----ccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1029 HG--PGRAVIPVVLLGSGLA-----EGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1029 ~~--~~~~~~~~~~~~~~~~-----~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
.. ......+......... ........+.+++.+|++.||++|||+.|+++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 296 (308)
T 3g33_A 240 EDDWPRDVSLPRGAFPPRGPRPVQSVVPEMEESGAQLLLEMLTFNPHKRISAFRALQ 296 (308)
T ss_dssp TTTSCSSCSSCGGGSCCCCCCCHHHHSCSCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred hhhccchhhccccccCCCCCCcHHHhCccccHHHHHHHHHHhcCCCccCCCHHHHhc
Confidence 00 0000000000000000 01123457889999999999999999999975
No 167
>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}
Probab=100.00 E-value=3e-37 Score=346.33 Aligned_cols=266 Identities=23% Similarity=0.269 Sum_probs=200.7
Q ss_pred CCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCcc--chHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeEE
Q 001384 805 GKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGLE--GEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEKI 881 (1088)
Q Consensus 805 ~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~--~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~~ 881 (1088)
++|++.+.||+|+||+||+|++. +|+.||||++...... ..+.+.+|++++.+ ++||||+++++++.+++..+
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~----l~h~~i~~~~~~~~~~~~~~ 78 (311)
T 4agu_A 3 EKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQ----LKHPNLVNLLEVFRRKRRLH 78 (311)
T ss_dssp CCEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHH----CCCTTBCCEEEEEEETTEEE
T ss_pred ccceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHHh----CCCCCccchhheeecCCeEE
Confidence 67999999999999999999986 5899999998765332 23567889999987 67999999999999999999
Q ss_pred EEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccceeecCC
Q 001384 882 LVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARVVSAG 961 (1088)
Q Consensus 882 lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~~~~ 961 (1088)
+||||+++++|.++++....+++..++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||.++.....
T Consensus 79 lv~e~~~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~ 155 (311)
T 4agu_A 79 LVFEYCDHTVLHELDRYQRGVPEHLVKSITWQTLQAVNFCHKH---NCIHRDVKPENILITKHSVIKLCDFGFARLLTGP 155 (311)
T ss_dssp EEEECCSEEHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECC--
T ss_pred EEEEeCCCchHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCCChhhEEEcCCCCEEEeeCCCchhccCc
Confidence 9999999999999998888899999999999999999999999 9999999999999999999999999999876532
Q ss_pred CCcccccccccccccCccccCC-CCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHH-HHHhhhcc-----------CC
Q 001384 962 DSHVSTTIAGTVGYVAPEYGQT-WQATTKGDVYSFGVLAMELATGRRALEGGEECLVE-WGRRVMGY-----------GR 1028 (1088)
Q Consensus 962 ~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~-~~~~~~~~-----------~~ 1028 (1088)
.. ......+|..|+|||++.+ ..++.++||||+|+++|+|++|+.||.+....... ........ ..
T Consensus 156 ~~-~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (311)
T 4agu_A 156 SD-YYDDEVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGKSDVDQLYLIRKTLGDLIPRHQQVFSTNQ 234 (311)
T ss_dssp -----------GGGCCHHHHHTCSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHHHHTCG
T ss_pred cc-ccCCCcCCccccChHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhccccccccccccccc
Confidence 22 2334578999999998765 67899999999999999999999999876542111 11111000 00
Q ss_pred CCCCccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1029 HGPGRAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1029 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
........+.................+.+++.+|++.||++|||++|+++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 284 (311)
T 4agu_A 235 YFSGVKIPDPEDMEPLELKFPNISYPALGLLKGCLHMDPTERLTCEQLLH 284 (311)
T ss_dssp GGTTCCCCCCSSCCCHHHHCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHT
T ss_pred ccccCcCCCccccchhhhhcccccHHHHHHHHHHccCChhhcCCHHHHhc
Confidence 00000000000000000001123456889999999999999999999985
No 168
>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}
Probab=100.00 E-value=5.5e-37 Score=339.48 Aligned_cols=248 Identities=27% Similarity=0.361 Sum_probs=197.9
Q ss_pred CCCCccceecccCceEEEEEEeC-CCcEEEEEEccccC-ccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeEEE
Q 001384 805 GKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREG-LEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEKIL 882 (1088)
Q Consensus 805 ~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~~l 882 (1088)
++|++.+.||+|+||.||+|.++ +++.||+|++.... ....+.+.+|++++++ ++||||+++++++.+....++
T Consensus 22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~----l~hp~iv~~~~~~~~~~~~~l 97 (285)
T 3is5_A 22 DLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKS----LDHPNIIKIFEVFEDYHNMYI 97 (285)
T ss_dssp HHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCCSCHHHHHHHHHHHHT----CCCTTBCCEEEEEECSSEEEE
T ss_pred hheeecceeccCCCeEEEEEEEccCCceEEEEEeeccccchhHHHHHHHHHHHHh----CCCchHHhHHHheecCCeEEE
Confidence 46899999999999999999975 68899999997653 2345788999999997 679999999999999999999
Q ss_pred EEEecCCCCHHHHHhh----cCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEE---cCCCCEEEeecccc
Q 001384 883 VYEYMEGGSLEDIISD----RTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLL---DKEGKALVTDFGLA 955 (1088)
Q Consensus 883 v~e~~~~gsL~~~l~~----~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll---~~~~~~kl~Dfg~a 955 (1088)
||||+++|+|.+++.. ...+++..++.++.|++.||+|||++ +|+||||||+||++ +.++.+||+|||++
T Consensus 98 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~dikp~NIl~~~~~~~~~~kl~Dfg~a 174 (285)
T 3is5_A 98 VMETCEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAYFHSQ---HVVHKDLKPENILFQDTSPHSPIKIIDFGLA 174 (285)
T ss_dssp EECCCSCCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEESSSSTTCCEEECCCCCC
T ss_pred EEEeCCCCcHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHHHHHhC---CEEECCCCHHHEEEecCCCCCCEEEEeeecc
Confidence 9999999999998854 35799999999999999999999999 99999999999999 45688999999999
Q ss_pred eeecCCCCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCCCCCccc
Q 001384 956 RVVSAGDSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRHGPGRAV 1035 (1088)
Q Consensus 956 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1035 (1088)
+..... .......||+.|+|||++.. .++.++||||+|+++|||++|+.||.+............. .......
T Consensus 175 ~~~~~~--~~~~~~~~t~~y~aPE~~~~-~~~~~~Di~slG~il~~ll~g~~pf~~~~~~~~~~~~~~~---~~~~~~~- 247 (285)
T 3is5_A 175 ELFKSD--EHSTNAAGTALYMAPEVFKR-DVTFKCDIWSAGVVMYFLLTGCLPFTGTSLEEVQQKATYK---EPNYAVE- 247 (285)
T ss_dssp CC------------CTTGGGCCHHHHTT-CCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHC---CCCCCC--
T ss_pred eecCCc--ccCcCcccccCcCChHHhcc-CCCcccCeehHHHHHHHHHhCCCCCCCCCHHHHHhhhccC---Ccccccc-
Confidence 865432 22344578999999998764 7899999999999999999999999876542222111111 0000000
Q ss_pred cchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1036 IPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1036 ~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
......++.+++.+|++.||++||+++|+++
T Consensus 248 ------------~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~ 278 (285)
T 3is5_A 248 ------------CRPLTPQAVDLLKQMLTKDPERRPSAAQVLH 278 (285)
T ss_dssp -------------CCCCHHHHHHHHHHTCSCTTTSCCHHHHHT
T ss_pred ------------cCcCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 0012356778999999999999999999985
No 169
>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A
Probab=100.00 E-value=4.8e-37 Score=343.45 Aligned_cols=250 Identities=25% Similarity=0.320 Sum_probs=204.4
Q ss_pred cCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeEEE
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGLEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEKIL 882 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~~l 882 (1088)
.++|++.+.||+|+||.||+|++. +|+.||+|++..........+.+|++++.. ++||||+++++++.+....++
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~----l~h~~i~~~~~~~~~~~~~~l 83 (304)
T 2jam_A 8 RKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKK----IKHENIVTLEDIYESTTHYYL 83 (304)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC------HHHHHHHHHHH----CCCTTBCCEEEEEECSSEEEE
T ss_pred hccceeeeeccCCCCceEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHh----CCCCCeeehhhhcccCCEEEE
Confidence 357899999999999999999976 789999999987654455678899999987 679999999999999999999
Q ss_pred EEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEE---cCCCCEEEeecccceeec
Q 001384 883 VYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLL---DKEGKALVTDFGLARVVS 959 (1088)
Q Consensus 883 v~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll---~~~~~~kl~Dfg~a~~~~ 959 (1088)
||||+++++|.+++.....+++.+++.++.|++.||+|||+. +|+||||||+||++ +.++.+||+|||.++...
T Consensus 84 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dikp~NIl~~~~~~~~~~kl~Dfg~~~~~~ 160 (304)
T 2jam_A 84 VMQLVSGGELFDRILERGVYTEKDASLVIQQVLSAVKYLHEN---GIVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQ 160 (304)
T ss_dssp EECCCCSCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCSCCGGGCEESSSSTTCCEEBCSCSTTCCCC
T ss_pred EEEcCCCccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEEecCCCCCCEEEccCCcceecC
Confidence 999999999999998888899999999999999999999999 99999999999999 788999999999987543
Q ss_pred CCCCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCCCCCccccchh
Q 001384 960 AGDSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRHGPGRAVIPVV 1039 (1088)
Q Consensus 960 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1039 (1088)
. .......|++.|+|||.+.+..++.++||||+|+++|+|++|+.||........ .......... .+
T Consensus 161 ~---~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~--~~~i~~~~~~------~~-- 227 (304)
T 2jam_A 161 N---GIMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEETESKL--FEKIKEGYYE------FE-- 227 (304)
T ss_dssp C---BTTHHHHSCCCBCCTTTBSSCSCCHHHHHHHHHHHHHHHHHSSCTTTTSCHHHH--HHHHHHCCCC------CC--
T ss_pred C---CccccccCCCCccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCHHHH--HHHHHcCCCC------CC--
Confidence 2 123345689999999999999999999999999999999999999987544211 1111100000 00
Q ss_pred hcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1040 LLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1040 ~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
.......+..+.+++.+|++.||++||+++|+++
T Consensus 228 -----~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~ 261 (304)
T 2jam_A 228 -----SPFWDDISESAKDFICHLLEKDPNERYTCEKALS 261 (304)
T ss_dssp -----TTTTTTSCHHHHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred -----ccccccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 0001223457888999999999999999999986
No 170
>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*
Probab=100.00 E-value=1.1e-37 Score=350.83 Aligned_cols=268 Identities=25% Similarity=0.372 Sum_probs=208.2
Q ss_pred CCccceecccCceEEEEEEeC-----CCcEEEEEEccccCc-cchHHHHHHHHHHhCCCCCCCCCceeEEeeEEec--CC
Q 001384 807 FSEDRIIGKGGFGTVYRGVLP-----DGREVAVKKLQREGL-EGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLD--GS 878 (1088)
Q Consensus 807 ~~~~~~LG~G~~g~Vy~~~~~-----~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~--~~ 878 (1088)
|++.+.||+|+||+||+|.++ +++.||||++..... ...+.+.+|++++++ ++||||+++++++.+ ..
T Consensus 33 ~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~----l~h~~iv~~~~~~~~~~~~ 108 (318)
T 3lxp_A 33 LKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRT----LYHEHIIKYKGCCEDAGAA 108 (318)
T ss_dssp EEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHHHH----CCCTTBCCEEEEEEETTTT
T ss_pred HhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHHHh----CCCcchhhEEEEEecCCCc
Confidence 488999999999999998642 578999999987532 234578999999997 679999999999987 46
Q ss_pred eEEEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccceee
Q 001384 879 EKILVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARVV 958 (1088)
Q Consensus 879 ~~~lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~ 958 (1088)
..++||||+++|+|.+++.... +++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++..
T Consensus 109 ~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~i~~~l~~~l~~LH~~---~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~ 184 (318)
T 3lxp_A 109 SLQLVMEYVPLGSLRDYLPRHS-IGLAQLLLFAQQICEGMAYLHAQ---HYIHRDLAARNVLLDNDRLVKIGDFGLAKAV 184 (318)
T ss_dssp EEEEEECCCTTCBHHHHGGGSC-CCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCGGGCEEC
T ss_pred eEEEEEecccCCcHHHHHhhCC-CCHHHHHHHHHHHHHHHHHHHhC---CccCCCCchheEEEcCCCCEEECCccccccc
Confidence 7899999999999999997654 89999999999999999999999 9999999999999999999999999999887
Q ss_pred cCCCCc--ccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCCCCCcccc
Q 001384 959 SAGDSH--VSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRHGPGRAVI 1036 (1088)
Q Consensus 959 ~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1036 (1088)
...... ......+|..|+|||++.+..++.++||||+|+++|+|++|+.||.........+..... .........
T Consensus 185 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~---~~~~~~~~~ 261 (318)
T 3lxp_A 185 PEGHEYYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPTKFLELIGIAQ---GQMTVLRLT 261 (318)
T ss_dssp CTTCSEEEC---CCCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCC---HHHHHHHHH
T ss_pred cccccccccccCCCCCceeeChHHhcCCCCCcHHHHHHHHHHHHHHHhCCCcccccchhhhhhhcccc---cchhHHHHH
Confidence 543322 233456788899999998888999999999999999999999999764321111100000 000000000
Q ss_pred chhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhhCC
Q 001384 1037 PVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKILP 1085 (1088)
Q Consensus 1037 ~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i~~ 1085 (1088)
.....+.....+...+.++.+++.+|++.||++||+++|+++.|+++.+
T Consensus 262 ~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l~~ 310 (318)
T 3lxp_A 262 ELLERGERLPRPDKCPAEVYHLMKNCWETEASFRPTFENLIPILKTVHE 310 (318)
T ss_dssp HHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHHhcccCCCCCccccHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHHH
Confidence 0111111122233445688999999999999999999999999998854
No 171
>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*
Probab=100.00 E-value=8.4e-38 Score=344.80 Aligned_cols=250 Identities=31% Similarity=0.398 Sum_probs=199.4
Q ss_pred cCCCCccceecccCceEEEEEEeCCCcEEEEEEccccCccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecC-CeEEE
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLPDGREVAVKKLQREGLEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDG-SEKIL 882 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~-~~~~l 882 (1088)
.++|++.+.||+|+||.||+|.++ |+.||||++... ...+.+.+|++++++ ++||||+++++++.+. +..++
T Consensus 20 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~--~~~~~~~~E~~~l~~----l~h~~iv~~~~~~~~~~~~~~l 92 (278)
T 1byg_A 20 MKELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKND--ATAQAFLAEASVMTQ----LRHSNLVQLLGVIVEEKGGLYI 92 (278)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEET-TEEEEEEECCCC--C--HHHHHTHHHHTT----CCCTTBCCEEEEECCC--CCEE
T ss_pred hhhceEEeEEecCCCceEEEEEEc-CCEEEEEEecch--hHHHHHHHHHHHHHh----CCCCCEeeEEEEEEcCCCceEE
Confidence 357899999999999999999984 889999999865 345678999999987 6799999999987654 47899
Q ss_pred EEEecCCCCHHHHHhhcCC--CCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccceeecC
Q 001384 883 VYEYMEGGSLEDIISDRTR--LTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARVVSA 960 (1088)
Q Consensus 883 v~e~~~~gsL~~~l~~~~~--l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~~~ 960 (1088)
||||+++|+|.+++..... +++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||++.....
T Consensus 93 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~ 169 (278)
T 1byg_A 93 VTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGN---NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASS 169 (278)
T ss_dssp EECCCTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTSCEEECCCCC------
T ss_pred EEecCCCCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHhC---CccccCCCcceEEEeCCCcEEEeeccccccccc
Confidence 9999999999999976543 89999999999999999999999 999999999999999999999999999876543
Q ss_pred CCCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHh-CCcCCCCCchhHHHHHHhhhccCCCCCCccccchh
Q 001384 961 GDSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELAT-GRRALEGGEECLVEWGRRVMGYGRHGPGRAVIPVV 1039 (1088)
Q Consensus 961 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1039 (1088)
. .....++..|+|||.+.+..++.++||||+|+++|||++ |+.||....... .......
T Consensus 170 ~----~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~~--~~~~~~~-------------- 229 (278)
T 1byg_A 170 T----QDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKD--VVPRVEK-------------- 229 (278)
T ss_dssp ----------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCGGG--HHHHHTT--------------
T ss_pred c----ccCCCccccccCHHHhCCCCCCchhcHHHHHHHHHHHHhCCCCCCCCCCHHH--HHHHHhc--------------
Confidence 2 223357889999999988899999999999999999998 999998653311 1111110
Q ss_pred hcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhhCC
Q 001384 1040 LLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKILP 1085 (1088)
Q Consensus 1040 ~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i~~ 1085 (1088)
+.....+...+..+.+++.+|++.||++||++.|+++.|+++..
T Consensus 230 --~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~i~~ 273 (278)
T 1byg_A 230 --GYKMDAPDGCPPAVYEVMKNCWHLDAAMRPSFLQLREQLEHIKT 273 (278)
T ss_dssp --TCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred --CCCCCCcccCCHHHHHHHHHHhcCChhhCCCHHHHHHHHHHHHh
Confidence 00011122334678889999999999999999999999999854
No 172
>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*
Probab=100.00 E-value=8.7e-38 Score=353.35 Aligned_cols=255 Identities=29% Similarity=0.426 Sum_probs=204.1
Q ss_pred CCCCccceecccCceEEEEEEeC-CCcE--EEEEEccccC-ccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeE
Q 001384 805 GKFSEDRIIGKGGFGTVYRGVLP-DGRE--VAVKKLQREG-LEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEK 880 (1088)
Q Consensus 805 ~~~~~~~~LG~G~~g~Vy~~~~~-~~~~--vavK~~~~~~-~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~ 880 (1088)
++|++.+.||+|+||.||+|++. ++.. ||+|++.... ....+.+.+|++++.++. +||||+++++++.+.+..
T Consensus 25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~---~hp~iv~~~~~~~~~~~~ 101 (327)
T 1fvr_A 25 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLG---HHPNIINLLGACEHRGYL 101 (327)
T ss_dssp GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCC---CCTTBCCEEEEEEETTEE
T ss_pred HHccceeeeecCCCceEEEEEEccCCcccceeeeeeccccchHHHHHHHHHHHHHHhcc---CCCchhhhceeeeeCCce
Confidence 56899999999999999999975 5654 4999887532 223456889999998732 799999999999999999
Q ss_pred EEEEEecCCCCHHHHHhhcC----------------CCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCC
Q 001384 881 ILVYEYMEGGSLEDIISDRT----------------RLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKE 944 (1088)
Q Consensus 881 ~lv~e~~~~gsL~~~l~~~~----------------~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~ 944 (1088)
++||||+++|+|.+++.... .+++.+++.++.|++.||+|||++ +|+||||||+||+++.+
T Consensus 102 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIl~~~~ 178 (327)
T 1fvr_A 102 YLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQK---QFIHRDLAARNILVGEN 178 (327)
T ss_dssp EEEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECGG
T ss_pred EEEEecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCccceEEEcCC
Confidence 99999999999999997654 699999999999999999999999 99999999999999999
Q ss_pred CCEEEeecccceeecCCCCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHh-CCcCCCCCchhHHHHHHhh
Q 001384 945 GKALVTDFGLARVVSAGDSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELAT-GRRALEGGEECLVEWGRRV 1023 (1088)
Q Consensus 945 ~~~kl~Dfg~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~ellt-g~~p~~~~~~~~~~~~~~~ 1023 (1088)
+.+||+|||+++.... ........++..|+|||++.+..++.++||||+|+++|||++ |+.||.+..... .....
T Consensus 179 ~~~kL~Dfg~~~~~~~--~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~~~--~~~~~ 254 (327)
T 1fvr_A 179 YVAKIADFGLSRGQEV--YVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAE--LYEKL 254 (327)
T ss_dssp GCEEECCTTCEESSCE--ECCC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCHHH--HHHHG
T ss_pred CeEEEcccCcCccccc--cccccCCCCCccccChhhhccccCCchhcchHHHHHHHHHHcCCCCCCCCCcHHH--HHHHh
Confidence 9999999999874321 112233456889999999988889999999999999999998 999998764321 11111
Q ss_pred hccCCCCCCccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhhCC
Q 001384 1024 MGYGRHGPGRAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKILP 1085 (1088)
Q Consensus 1024 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i~~ 1085 (1088)
.... ....+......+.+++.+|++.||++||+++|+++.|+++++
T Consensus 255 ~~~~----------------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~ 300 (327)
T 1fvr_A 255 PQGY----------------RLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRMLE 300 (327)
T ss_dssp GGTC----------------CCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred hcCC----------------CCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHH
Confidence 1000 001122234578899999999999999999999999998864
No 173
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Probab=100.00 E-value=2e-37 Score=359.22 Aligned_cols=248 Identities=25% Similarity=0.290 Sum_probs=190.6
Q ss_pred CCCCcc-ceecccCceEEEEEEeC-CCcEEEEEEccccCccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEec----CC
Q 001384 805 GKFSED-RIIGKGGFGTVYRGVLP-DGREVAVKKLQREGLEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLD----GS 878 (1088)
Q Consensus 805 ~~~~~~-~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~----~~ 878 (1088)
++|.+. ++||+|+||+||+|+++ +++.||||++... ..+.+|++++.+. .+||||+++++++.. ..
T Consensus 61 ~~y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~~-----~~~~~E~~~~~~~---~~hp~iv~l~~~~~~~~~~~~ 132 (400)
T 1nxk_A 61 DDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC-----PKARREVELHWRA---SQCPHIVRIVDVYENLYAGRK 132 (400)
T ss_dssp GTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECS-----HHHHHHHHHHHHH---TTSTTBCCEEEEEEEEETTEE
T ss_pred ccceeccceeeeccCeEEEEEEECCCCCEEEEEEeCcc-----hhHHHHHHHHHHh---cCCCCcceEeEEEeecccCCc
Confidence 456665 68999999999999976 6899999998643 4567777776442 479999999998875 56
Q ss_pred eEEEEEEecCCCCHHHHHhhcC--CCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcC---CCCEEEeecc
Q 001384 879 EKILVYEYMEGGSLEDIISDRT--RLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDK---EGKALVTDFG 953 (1088)
Q Consensus 879 ~~~lv~e~~~~gsL~~~l~~~~--~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~---~~~~kl~Dfg 953 (1088)
..|+||||+++|+|.+++.... .+++.+++.++.||+.||+|||+. +|+||||||+||+++. ++.+||+|||
T Consensus 133 ~~~lv~E~~~gg~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~Nill~~~~~~~~~kl~DFG 209 (400)
T 1nxk_A 133 CLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSI---NIAHRDVKPENLLYTSKRPNAILKLTDFG 209 (400)
T ss_dssp EEEEEEECCCSEEHHHHHHCC---CCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSTTCCEEECCCT
T ss_pred EEEEEEEeCCCCcHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCcCcceEEEecCCCCccEEEEecc
Confidence 7899999999999999998754 599999999999999999999999 9999999999999997 7899999999
Q ss_pred cceeecCCCCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHH--HHHHhhhccCCCCC
Q 001384 954 LARVVSAGDSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEECLV--EWGRRVMGYGRHGP 1031 (1088)
Q Consensus 954 ~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~--~~~~~~~~~~~~~~ 1031 (1088)
+++..... .......||+.|+|||++.+..++.++|||||||++|||++|+.||.+...... ........... .
T Consensus 210 ~a~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~i~~~~~-~- 285 (400)
T 1nxk_A 210 FAKETTSH--NSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQY-E- 285 (400)
T ss_dssp TCEECC-------------CTTCCGGGSCCCCSSSHHHHHHHHHHHHHHHHSSCSCCCCTTCSSCCSHHHHHHHTCC-C-
T ss_pred cccccCCC--CccccCCCCCCccCHhhcCCCCCCCcccHHHHHHHHHHHHhCCCCCCCCccccccHHHHHHHHcCcc-c-
Confidence 99875432 223456789999999999999999999999999999999999999976532100 00011100000 0
Q ss_pred CccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1032 GRAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1032 ~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
.+ .........++.+++.+||+.||++||++.|+++
T Consensus 286 ----~~-------~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~eil~ 321 (400)
T 1nxk_A 286 ----FP-------NPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMN 321 (400)
T ss_dssp ----CC-------TTTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred ----CC-------CcccccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 00 0001223457888999999999999999999986
No 174
>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A
Probab=100.00 E-value=8.6e-38 Score=354.25 Aligned_cols=251 Identities=26% Similarity=0.324 Sum_probs=200.9
Q ss_pred cCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeEEE
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGLEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEKIL 882 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~~l 882 (1088)
.++|++.+.||+|+||+||+|+++ +++.||||++.+.... ..+|++++.+. .+||||+++++++.++...|+
T Consensus 21 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~----~~~E~~~l~~~---~~hp~iv~~~~~~~~~~~~~l 93 (342)
T 2qr7_A 21 TDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKRD----PTEEIEILLRY---GQHPNIITLKDVYDDGKYVYV 93 (342)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTTCC----CHHHHHHHHHH---TTSTTBCCEEEEEECSSEEEE
T ss_pred cccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEcccCC----hHHHHHHHHHh---cCCCCcCeEEEEEEcCCEEEE
Confidence 457999999999999999999976 6889999999765332 34566666653 279999999999999999999
Q ss_pred EEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCC----CCEEEeecccceee
Q 001384 883 VYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKE----GKALVTDFGLARVV 958 (1088)
Q Consensus 883 v~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~----~~~kl~Dfg~a~~~ 958 (1088)
||||+++|+|.+++.....+++.+++.++.||+.||+|||++ +|+||||||+||++..+ +.+||+|||+++..
T Consensus 94 v~E~~~gg~L~~~i~~~~~~~~~~~~~~~~qi~~al~~lH~~---givHrDlkp~NIl~~~~~~~~~~~kl~Dfg~a~~~ 170 (342)
T 2qr7_A 94 VTELMKGGELLDKILRQKFFSEREASAVLFTITKTVEYLHAQ---GVVHRDLKPSNILYVDESGNPESIRICDFGFAKQL 170 (342)
T ss_dssp EECCCCSCBHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEESSSSCSGGGEEECCCTTCEEC
T ss_pred EEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CcEeccCCHHHEEEecCCCCcCeEEEEECCCcccC
Confidence 999999999999999888899999999999999999999999 99999999999998543 35999999999876
Q ss_pred cCCCCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCch-hHHHHHHhhhccCCCCCCccccc
Q 001384 959 SAGDSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEE-CLVEWGRRVMGYGRHGPGRAVIP 1037 (1088)
Q Consensus 959 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 1037 (1088)
..... ......||+.|+|||++.+..++.++||||+||++|||++|+.||..... ...+....+....... +
T Consensus 171 ~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~~~~i~~~~~~~------~ 243 (342)
T 2qr7_A 171 RAENG-LLMTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANGPDDTPEEILARIGSGKFSL------S 243 (342)
T ss_dssp BCTTC-CBCCSSCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSCSSTTSCHHHHHHHHHHCCCCC------C
T ss_pred cCCCC-ceeccCCCccccCHHHhcCCCCCCccCeeeHhHHHHHHhcCCCCCCCCCcCCHHHHHHHHccCCccc------C
Confidence 54322 23456789999999998887899999999999999999999999986432 2222222222111000 0
Q ss_pred hhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1038 VVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1038 ~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
. .........+.+++.+|++.||++||++.|+++
T Consensus 244 ----~---~~~~~~s~~~~~li~~~L~~dP~~R~t~~~il~ 277 (342)
T 2qr7_A 244 ----G---GYWNSVSDTAKDLVSKMLHVDPHQRLTAALVLR 277 (342)
T ss_dssp ----S---TTTTTSCHHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred ----c---cccccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 0 001223456888999999999999999999875
No 175
>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=4.4e-38 Score=359.40 Aligned_cols=251 Identities=27% Similarity=0.371 Sum_probs=203.4
Q ss_pred CCCCccceecccCceEEEEEEe----CCCcEEEEEEccccCc----cchHHHHHHHHHHhCCCCCCCCCceeEEeeEEec
Q 001384 805 GKFSEDRIIGKGGFGTVYRGVL----PDGREVAVKKLQREGL----EGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLD 876 (1088)
Q Consensus 805 ~~~~~~~~LG~G~~g~Vy~~~~----~~~~~vavK~~~~~~~----~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~ 876 (1088)
++|++.+.||+|+||.||+|+. .+++.||||+++.... ...+.+.+|++++..+. +||||+++++++..
T Consensus 54 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~---~h~~iv~~~~~~~~ 130 (355)
T 1vzo_A 54 ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIR---QSPFLVTLHYAFQT 130 (355)
T ss_dssp GGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHH---TCTTBCCEEEEEEE
T ss_pred cceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHcc---CCCceeEEEEEEee
Confidence 5799999999999999999997 3689999999975421 22345667888887632 69999999999999
Q ss_pred CCeEEEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccce
Q 001384 877 GSEKILVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLAR 956 (1088)
Q Consensus 877 ~~~~~lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~ 956 (1088)
+...++||||+++|+|.+++.....+++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++
T Consensus 131 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~DfG~a~ 207 (355)
T 1vzo_A 131 ETKLHLILDYINGGELFTHLSQRERFTEHEVQIYVGEIVLALEHLHKL---GIIYRDIKLENILLDSNGHVVLTDFGLSK 207 (355)
T ss_dssp TTEEEEEECCCCSCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEESCSSEEE
T ss_pred CceEEEEeecCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCcEEEeeCCCCe
Confidence 999999999999999999999888899999999999999999999999 99999999999999999999999999998
Q ss_pred eecCCCCcccccccccccccCccccCC--CCCCcchhHHHHHHHHHHHHhCCcCCCCCch--hHHHHHHhhhccCCCCCC
Q 001384 957 VVSAGDSHVSTTIAGTVGYVAPEYGQT--WQATTKGDVYSFGVLAMELATGRRALEGGEE--CLVEWGRRVMGYGRHGPG 1032 (1088)
Q Consensus 957 ~~~~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~~DvwslG~~l~elltg~~p~~~~~~--~~~~~~~~~~~~~~~~~~ 1032 (1088)
.+............||+.|+|||++.+ ..++.++|||||||++|||++|+.||..... .............
T Consensus 208 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~----- 282 (355)
T 1vzo_A 208 EFVADETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQAEISRRILKSE----- 282 (355)
T ss_dssp ECCGGGGGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSCCCHHHHHHHHHHCC-----
T ss_pred ecccCCCCcccCcccCcCccChhhhcCCCCCCCchhhHHHHHHHHHHHHHCCCCCccCCccchHHHHHHHHhccC-----
Confidence 765433334445679999999998875 4578999999999999999999999975432 2222222222100
Q ss_pred ccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCC-----CHHHHHH
Q 001384 1033 RAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARP-----NVKEVLA 1078 (1088)
Q Consensus 1033 ~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RP-----s~~eil~ 1078 (1088)
...+......+.+++.+|++.||++|| +++|+++
T Consensus 283 ------------~~~~~~~~~~~~~li~~~L~~dP~~R~~~~~~s~~ell~ 321 (355)
T 1vzo_A 283 ------------PPYPQEMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKE 321 (355)
T ss_dssp ------------CCCCTTSCHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHT
T ss_pred ------------CCCCcccCHHHHHHHHHHhhhCHHHhcCCCCCCHHHHHc
Confidence 011223345678899999999999999 8999875
No 176
>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=9e-38 Score=358.32 Aligned_cols=255 Identities=31% Similarity=0.464 Sum_probs=194.3
Q ss_pred CCCccceecccCceEEEEEEeC--CC--cEEEEEEccccCc-cchHHHHHHHHHHhCCCCCCCCCceeEEeeEEec-CCe
Q 001384 806 KFSEDRIIGKGGFGTVYRGVLP--DG--REVAVKKLQREGL-EGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLD-GSE 879 (1088)
Q Consensus 806 ~~~~~~~LG~G~~g~Vy~~~~~--~~--~~vavK~~~~~~~-~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~-~~~ 879 (1088)
.|++.+.||+|+||+||+|++. ++ ..||||.+..... ...+++.+|+.++++ ++||||+++++++.. ++.
T Consensus 90 ~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~----l~hpnIv~~~~~~~~~~~~ 165 (373)
T 3c1x_A 90 IVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKD----FSHPNVLSLLGICLRSEGS 165 (373)
T ss_dssp EEEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHTTSTT----CCCTTBCCCCEEECCCSSC
T ss_pred eeecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHh----CCCCCcceEEEEEEcCCCC
Confidence 4667789999999999999864 22 4689999876432 334678899998886 679999999998754 567
Q ss_pred EEEEEEecCCCCHHHHHhhcC-CCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccceee
Q 001384 880 KILVYEYMEGGSLEDIISDRT-RLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARVV 958 (1088)
Q Consensus 880 ~~lv~e~~~~gsL~~~l~~~~-~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~ 958 (1088)
.++||||+++|+|.++++... .+++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++..
T Consensus 166 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~~~~kL~DFG~a~~~ 242 (373)
T 3c1x_A 166 PLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASK---KFVHRDLAARNCMLDEKFTVKVADFGLARDM 242 (373)
T ss_dssp CEEEEECCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCC------
T ss_pred eEEEEECCCCCCHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHHC---CEecCccchheEEECCCCCEEEeeccccccc
Confidence 899999999999999997654 589999999999999999999999 9999999999999999999999999999866
Q ss_pred cCCCCc---ccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHh-CCcCCCCCch-hHHHHHHhhhccCCCCCCc
Q 001384 959 SAGDSH---VSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELAT-GRRALEGGEE-CLVEWGRRVMGYGRHGPGR 1033 (1088)
Q Consensus 959 ~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~ellt-g~~p~~~~~~-~~~~~~~~~~~~~~~~~~~ 1033 (1088)
...... ......+|+.|+|||.+.+..++.++||||||+++|||++ |..||..... ........
T Consensus 243 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~ellt~~~~p~~~~~~~~~~~~~~~----------- 311 (373)
T 3c1x_A 243 YDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQ----------- 311 (373)
T ss_dssp ---------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCSSCHHHHHHT-----------
T ss_pred cccccccccccCCCCCcccccChHHhcCCCCCcHHHHHHHHHHHHHHHhCcCCCCCCCCHHHHHHHHHc-----------
Confidence 433211 1233457789999999988899999999999999999999 6667765433 11111111
Q ss_pred cccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhhCCC
Q 001384 1034 AVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKILPH 1086 (1088)
Q Consensus 1034 ~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i~~~ 1086 (1088)
+.....+...+..+.+++.+||+.||++||+++|+++.|++++..
T Consensus 312 --------~~~~~~p~~~~~~l~~li~~cl~~dp~~RPs~~ell~~L~~i~~~ 356 (373)
T 3c1x_A 312 --------GRRLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFST 356 (373)
T ss_dssp --------TCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred --------CCCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHh
Confidence 011111223446788999999999999999999999999998654
No 177
>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...
Probab=100.00 E-value=6.5e-38 Score=352.63 Aligned_cols=267 Identities=25% Similarity=0.356 Sum_probs=213.3
Q ss_pred CHHHHHHHcCCCCccceecccCceEEEEEEe------CCCcEEEEEEccccCcc-chHHHHHHHHHHhCCCCCCCCCcee
Q 001384 796 TYSDILKATGKFSEDRIIGKGGFGTVYRGVL------PDGREVAVKKLQREGLE-GEREFRAEMEVLSGNGFGWPHPNLV 868 (1088)
Q Consensus 796 ~~~~~~~~~~~~~~~~~LG~G~~g~Vy~~~~------~~~~~vavK~~~~~~~~-~~~~~~~E~~~l~~~~~~l~h~niv 868 (1088)
.........++|++.+.||+|+||.||+|++ .+++.||||++...... ..+.+.+|++++.++. +||||+
T Consensus 18 ~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~---~hp~iv 94 (316)
T 2xir_A 18 DASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIG---HHLNVV 94 (316)
T ss_dssp CHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHC---CCTTBC
T ss_pred cccceecchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHHHhcc---cCCCee
Confidence 3344444567899999999999999999984 24688999999865332 3357889999998742 699999
Q ss_pred EEeeEEecCC-eEEEEEEecCCCCHHHHHhhcCC----------------CCHHHHHHHHHHHHHHHHHHHhcCCCCeEe
Q 001384 869 TLYGWCLDGS-EKILVYEYMEGGSLEDIISDRTR----------------LTWRRRLDIAIDVARALVFLHHECYPPIVH 931 (1088)
Q Consensus 869 ~l~~~~~~~~-~~~lv~e~~~~gsL~~~l~~~~~----------------l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH 931 (1088)
++++++...+ ..++||||+++|+|.+++..... +++.+++.++.|++.||+|||++ +|+|
T Consensus 95 ~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~i~H 171 (316)
T 2xir_A 95 NLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIH 171 (316)
T ss_dssp CEEEEECCTTSCCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHHHT---TCCC
T ss_pred eEEEEEecCCCceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHHhC---Cccc
Confidence 9999987754 58999999999999999987553 89999999999999999999999 9999
Q ss_pred cCCCCCCEEEcCCCCEEEeecccceeecCCCC-cccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHh-CCcCC
Q 001384 932 RDVKASNVLLDKEGKALVTDFGLARVVSAGDS-HVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELAT-GRRAL 1009 (1088)
Q Consensus 932 ~DLkp~NIll~~~~~~kl~Dfg~a~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~ellt-g~~p~ 1009 (1088)
|||||+||+++.++.+||+|||+++....... .......+|+.|+|||++.+..++.++||||+|+++|||++ |+.||
T Consensus 172 ~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~ 251 (316)
T 2xir_A 172 RDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPY 251 (316)
T ss_dssp SCCSGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSS
T ss_pred ccCccceEEECCCCCEEECCCccccccccCccceeccCCCcceeecCchhhccccccchhHHHHHHHHHHHHHhCCCCCC
Confidence 99999999999999999999999987654322 22334567889999999988899999999999999999998 99999
Q ss_pred CCCchhHHHHHHhhhccCCCCCCccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhhCC
Q 001384 1010 EGGEECLVEWGRRVMGYGRHGPGRAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKILP 1085 (1088)
Q Consensus 1010 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i~~ 1085 (1088)
.+............. ... ...+.....++.+++.+|++.||.+||++.|+++.|+++++
T Consensus 252 ~~~~~~~~~~~~~~~-~~~----------------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~ 310 (316)
T 2xir_A 252 PGVKIDEEFCRRLKE-GTR----------------MRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQ 310 (316)
T ss_dssp TTCCCSHHHHHHHHH-TCC----------------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHhcc-Ccc----------------CCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHh
Confidence 765432111111111 000 00112233568889999999999999999999999999864
No 178
>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...
Probab=100.00 E-value=6e-37 Score=338.93 Aligned_cols=255 Identities=23% Similarity=0.344 Sum_probs=206.2
Q ss_pred CCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCcc------chHHHHHHHHHHhCCCCCCCCCceeEEeeEEecC
Q 001384 805 GKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGLE------GEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDG 877 (1088)
Q Consensus 805 ~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~------~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~ 877 (1088)
++|++.+.||+|+||.||+|++. +++.||+|++...... ..+.+.+|++++++ ++||||+++++++.+.
T Consensus 5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~----l~h~~i~~~~~~~~~~ 80 (283)
T 3bhy_A 5 DHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILRE----IRHPNIITLHDIFENK 80 (283)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHH----CCCTTBCCEEEEEECS
T ss_pred hhhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHh----CCCCCeeehhheecCC
Confidence 46889999999999999999986 6899999998764322 35678999999987 6799999999999999
Q ss_pred CeEEEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCC----CEEEeecc
Q 001384 878 SEKILVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEG----KALVTDFG 953 (1088)
Q Consensus 878 ~~~~lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~----~~kl~Dfg 953 (1088)
...++||||+++++|.+++.....+++.+++.++.|++.||+|||++ +|+||||||+||+++.++ .+||+|||
T Consensus 81 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~~~~kl~dfg 157 (283)
T 3bhy_A 81 TDVVLILELVSGGELFDFLAEKESLTEDEATQFLKQILDGVHYLHSK---RIAHFDLKPENIMLLDKNVPNPRIKLIDFG 157 (283)
T ss_dssp SEEEEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCSSSSSCCEEECCCT
T ss_pred CeEEEEEeecCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCChHHEEEecCCCCCCceEEEecc
Confidence 99999999999999999998888899999999999999999999999 999999999999999877 89999999
Q ss_pred cceeecCCCCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCCCCCc
Q 001384 954 LARVVSAGDSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRHGPGR 1033 (1088)
Q Consensus 954 ~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 1033 (1088)
.+....... ......+++.|+|||.+.+..++.++||||+|+++|+|++|+.||.+...... .........
T Consensus 158 ~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~--~~~~~~~~~----- 228 (283)
T 3bhy_A 158 IAHKIEAGN--EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGETKQET--LTNISAVNY----- 228 (283)
T ss_dssp TCEECC----------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSSHHHH--HHHHHTTCC-----
T ss_pred cceeccCCC--cccccCCCcCccCcceecCCCCCcchhhhhHHHHHHHHHHCCCCCCCcchHHH--HHHhHhccc-----
Confidence 998764322 22345689999999999988999999999999999999999999987644211 111110000
Q ss_pred cccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH--HHHhh
Q 001384 1034 AVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA--MLIKI 1083 (1088)
Q Consensus 1034 ~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~--~L~~i 1083 (1088)
..+... .......+.+++.+|++.||++||++.|+++ .++++
T Consensus 229 -~~~~~~-------~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h~~~~~~ 272 (283)
T 3bhy_A 229 -DFDEEY-------FSNTSELAKDFIRRLLVKDPKRRMTIAQSLEHSWIKAI 272 (283)
T ss_dssp -CCCHHH-------HTTCCHHHHHHHHTTSCSSGGGSCCHHHHHHCHHHHHH
T ss_pred -CCcchh-------cccCCHHHHHHHHHHccCCHhHCcCHHHHHhCHHHHHH
Confidence 000000 1122356888999999999999999999987 44443
No 179
>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}
Probab=100.00 E-value=8.8e-38 Score=354.86 Aligned_cols=266 Identities=27% Similarity=0.396 Sum_probs=200.7
Q ss_pred CCCCccceecccCceEEEEEEeCCCcEEEEEEccccCccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEec-----CCe
Q 001384 805 GKFSEDRIIGKGGFGTVYRGVLPDGREVAVKKLQREGLEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLD-----GSE 879 (1088)
Q Consensus 805 ~~~~~~~~LG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~-----~~~ 879 (1088)
++|++.+.||+|+||.||+|+. +++.||||++... ....+..|.++.... .++||||+++++++.. ...
T Consensus 13 ~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~---~~~~~~~e~~~~~~~--~~~h~~i~~~~~~~~~~~~~~~~~ 86 (336)
T 3g2f_A 13 DNLKLLELIGRGRYGAVYKGSL-DERPVAVKVFSFA---NRQNFINEKNIYRVP--LMEHDNIARFIVGDERVTADGRME 86 (336)
T ss_dssp TSEEEEEEEEECSSEEEEEEEE-TTEEEEEEEEEGG---GHHHHHHHHHHHTST--TCCCTTBCCEEEEEEEECTTSCEE
T ss_pred HHhheeeecccCCCeEEEEEEE-CCeEEEEEEeecc---chhhHHHHHHHHHHH--hccCcchhhheecccccccCCCce
Confidence 5789999999999999999987 5899999999754 334555565555432 2689999999985542 336
Q ss_pred EEEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcC------CCCeEecCCCCCCEEEcCCCCEEEeecc
Q 001384 880 KILVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHEC------YPPIVHRDVKASNVLLDKEGKALVTDFG 953 (1088)
Q Consensus 880 ~~lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~------~~~ivH~DLkp~NIll~~~~~~kl~Dfg 953 (1088)
.++||||+++|+|.++++... .++..++.++.|++.||+|||+.+ .++|+||||||+||+++.++.+||+|||
T Consensus 87 ~~lv~e~~~~g~L~~~l~~~~-~~~~~~~~i~~qi~~~L~~LH~~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kL~DFG 165 (336)
T 3g2f_A 87 YLLVMEYYPNGSLXKYLSLHT-SDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISDFG 165 (336)
T ss_dssp EEEEECCCTTCBHHHHHHHCC-BCHHHHHHHHHHHHHHHHHHHCCBCCGGGCBCCEECSSCSGGGEEECTTSCEEECCCT
T ss_pred EEEEEecCCCCcHHHHHhhcc-cchhHHHHHHHHHHHHHHHHHhhhccccccccceeecccccceEEEcCCCcEEEeecc
Confidence 789999999999999997654 599999999999999999999873 2389999999999999999999999999
Q ss_pred cceeecCCCC-------cccccccccccccCccccCC-------CCCCcchhHHHHHHHHHHHHhCCcCCCCCchh----
Q 001384 954 LARVVSAGDS-------HVSTTIAGTVGYVAPEYGQT-------WQATTKGDVYSFGVLAMELATGRRALEGGEEC---- 1015 (1088)
Q Consensus 954 ~a~~~~~~~~-------~~~~~~~gt~~y~aPE~~~~-------~~~~~~~DvwslG~~l~elltg~~p~~~~~~~---- 1015 (1088)
+++.+..... .......||+.|+|||++.+ ..++.++|||||||++|||++|+.||......
T Consensus 166 ~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~~~~ 245 (336)
T 3g2f_A 166 LSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLFPGESVPEYQ 245 (336)
T ss_dssp TCEECSSSSCC---------CCTTSCGGGCCHHHHTTCCCGGGHHHHHHHHHHHHHHHHHHHHHTTBGGGSTTSCCCCCC
T ss_pred ceeecccccccCccccccccccCCCccceeCchhhcCCcccccccccccccchHHHHHHHHHHHhcCCcCCCccchhHHH
Confidence 9987653221 11234579999999998876 45678899999999999999998887543210
Q ss_pred ------------HHHHHHhhhccCCCCCCccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhh
Q 001384 1016 ------------LVEWGRRVMGYGRHGPGRAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKI 1083 (1088)
Q Consensus 1016 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i 1083 (1088)
..++..... . ......++ ...........++.+++.+||+.||++||+++|+++.|+++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~-----~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~e~l~~L~~l 316 (336)
T 3g2f_A 246 MAFQTEVGNHPTFEDMQVLVS-R---EKQRPKFP-----EAWKENSLAVRSLKETIEDCWDQDAEARLTAQXAEERMAEL 316 (336)
T ss_dssp CTTHHHHCSSCCHHHHHHHHT-T---SCCCCCCC-----TTCCCCSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHH
T ss_pred HhhhcccCCCchHHHHHhhhc-c---cccCCCCC-----cccccccchHHHHHHHHHHHhcCChhhCcchHHHHHHHHHH
Confidence 000000000 0 00000011 11112344667899999999999999999999999999998
Q ss_pred CCC
Q 001384 1084 LPH 1086 (1088)
Q Consensus 1084 ~~~ 1086 (1088)
+..
T Consensus 317 l~~ 319 (336)
T 3g2f_A 317 MMI 319 (336)
T ss_dssp HHC
T ss_pred HHH
Confidence 754
No 180
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.4e-37 Score=360.96 Aligned_cols=273 Identities=22% Similarity=0.247 Sum_probs=212.6
Q ss_pred cCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCc-cchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCC--e
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGL-EGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGS--E 879 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~--~ 879 (1088)
.++|++.+.||+|+||+||+|++. +|+.||||++..... ...+.+.+|++++++ ++||||+++++++.+.. .
T Consensus 8 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~----l~hpnIv~~~~~~~~~~~~~ 83 (396)
T 4eut_A 8 NHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKK----LNHKNIVKLFAIEEETTTRH 83 (396)
T ss_dssp SEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHH----CCCTTBCCEEEEEECTTTCC
T ss_pred CCceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHh----cCCCCCCeEEEeeccCCCCe
Confidence 357899999999999999999986 589999999986432 334677899999997 67999999999998755 7
Q ss_pred EEEEEEecCCCCHHHHHhhcCC---CCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEE----cCCCCEEEeec
Q 001384 880 KILVYEYMEGGSLEDIISDRTR---LTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLL----DKEGKALVTDF 952 (1088)
Q Consensus 880 ~~lv~e~~~~gsL~~~l~~~~~---l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll----~~~~~~kl~Df 952 (1088)
.++||||+++|+|.++++.... +++.+++.++.|++.||+|||++ +|+||||||+||++ +.++.+||+||
T Consensus 84 ~~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~kL~DF 160 (396)
T 4eut_A 84 KVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLREN---GIVHRNIKPGNIMRVIGEDGQSVYKLTDF 160 (396)
T ss_dssp EEEEECCCTTEEHHHHTTSGGGTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEEECTTSCEEEEECCG
T ss_pred eEEEEecCCCCCHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHHC---CEEECCcCHHHEEEeecCCCceeEEEecC
Confidence 7999999999999999976543 99999999999999999999999 99999999999999 77788999999
Q ss_pred ccceeecCCCCcccccccccccccCccccCC--------CCCCcchhHHHHHHHHHHHHhCCcCCCCCch--hHHHHHHh
Q 001384 953 GLARVVSAGDSHVSTTIAGTVGYVAPEYGQT--------WQATTKGDVYSFGVLAMELATGRRALEGGEE--CLVEWGRR 1022 (1088)
Q Consensus 953 g~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~--------~~~~~~~DvwslG~~l~elltg~~p~~~~~~--~~~~~~~~ 1022 (1088)
|+++...... ......||..|+|||++.. ..++.++|||||||++|||++|+.||..... ...+....
T Consensus 161 G~a~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~ 238 (396)
T 4eut_A 161 GAARELEDDE--QFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYK 238 (396)
T ss_dssp GGCEECCCGG--GSSCSSSCCTTCCHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHSSCSEECTTCTTTCHHHHHH
T ss_pred CCceEccCCC--ccccccCCccccCHHHhhccccccccccCCCcHHHHHHHHHHHHHHHHCCCCCCCCCcccchHHHHHH
Confidence 9998765322 2334578999999998754 5678899999999999999999999974321 11122222
Q ss_pred hhccCCCCCCccc---------cchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhhCCC
Q 001384 1023 VMGYGRHGPGRAV---------IPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKILPH 1086 (1088)
Q Consensus 1023 ~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i~~~ 1086 (1088)
............. .... ..............+.+++.+|++.||++||+++|+++.++++++.
T Consensus 239 ~~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~l~~ll~~~L~~dP~~R~s~~e~l~~l~~il~~ 310 (396)
T 4eut_A 239 IITGKPSGAISGVQKAENGPIDWSGD-MPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDILHR 310 (396)
T ss_dssp HHHSCCTTCCEEEECSTTCCEEEESS-CCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHHHTC
T ss_pred HhcCCCcccchhheeccCCCcccCcc-CCcccccchHHHhhchHHHHHhhccChhhhccHHHHHHHHHHHhhc
Confidence 2111100000000 0000 0011122466778899999999999999999999999999998753
No 181
>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*
Probab=100.00 E-value=5e-37 Score=354.83 Aligned_cols=251 Identities=20% Similarity=0.300 Sum_probs=198.4
Q ss_pred CCCCccceecccCceEEEEEEeCCCcEEEEEEccccCc--cchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeEEE
Q 001384 805 GKFSEDRIIGKGGFGTVYRGVLPDGREVAVKKLQREGL--EGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEKIL 882 (1088)
Q Consensus 805 ~~~~~~~~LG~G~~g~Vy~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~~l 882 (1088)
.+|++.+.||+|+||+||+|.+.+++.||||++..... ...+.+.+|++++.++. -.||||+++++++..++..|+
T Consensus 56 ~~y~~~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~--~~~~~iv~~~~~~~~~~~~~l 133 (390)
T 2zmd_A 56 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQ--QHSDKIIRLYDYEITDQYIYM 133 (390)
T ss_dssp EEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHT--TTCTTBCCEEEEEECSSEEEE
T ss_pred CceEEEEEEccCCCeEEEEEEcCCCCEEEEEEEecccccHHHHHHHHHHHHHHHHcc--cCCCeEEEEEEEEecCCEEEE
Confidence 35899999999999999999988899999999976532 23367889999998743 237999999999999999999
Q ss_pred EEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccceeecCCC
Q 001384 883 VYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARVVSAGD 962 (1088)
Q Consensus 883 v~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~~~~~ 962 (1088)
||| +.+++|.+++.....+++.+++.++.||+.||+|||++ +|+||||||+||+++ ++.+||+|||+++.+....
T Consensus 134 v~E-~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~lH~~---~ivHrDlkp~NIll~-~~~~kl~DFG~a~~~~~~~ 208 (390)
T 2zmd_A 134 VME-CGNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQH---GIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDT 208 (390)
T ss_dssp EEE-CCSEEHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHTT---TCCCCCCCGGGEEES-SSCEEECCCSSSCCC----
T ss_pred EEe-cCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCHHHEEEE-CCeEEEEecCccccccCCC
Confidence 999 56789999999888999999999999999999999999 999999999999995 6899999999998765432
Q ss_pred Cc-ccccccccccccCccccCC-----------CCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCCC
Q 001384 963 SH-VSTTIAGTVGYVAPEYGQT-----------WQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRHG 1030 (1088)
Q Consensus 963 ~~-~~~~~~gt~~y~aPE~~~~-----------~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~ 1030 (1088)
.. ......||+.|+|||++.+ ..++.++|||||||++|||++|+.||........... .........
T Consensus 209 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~~~~~~~-~~~~~~~~~ 287 (390)
T 2zmd_A 209 TSVVKDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLH-AIIDPNHEI 287 (390)
T ss_dssp -----CCSCCCGGGCCHHHHHCC------------CCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHH-HHHCTTSCC
T ss_pred ccccCCCCCcCCCccChHHhhhccccccccccccCCCChhhHHHHHHHHHHHHHCCCcchhhhHHHHHHH-HHhCccccC
Confidence 22 2345679999999998754 4689999999999999999999999986543222221 111100000
Q ss_pred CCccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1031 PGRAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1031 ~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
. . +.....++.+++.+|++.||++||++.|+++
T Consensus 288 ~----~-----------~~~~~~~~~~li~~~L~~dP~~Rps~~ell~ 320 (390)
T 2zmd_A 288 E----F-----------PDIPEKDLQDVLKCCLKRDPKQRISIPELLA 320 (390)
T ss_dssp C----C-----------CCCSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred C----C-----------CccchHHHHHHHHHHcccChhhCCCHHHHhh
Confidence 0 0 1111346788999999999999999999975
No 182
>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*
Probab=100.00 E-value=3.7e-37 Score=347.93 Aligned_cols=262 Identities=22% Similarity=0.302 Sum_probs=208.1
Q ss_pred ccCHHHHHHHcCCCCcc-ceecccCceEEEEEEeC-CCcEEEEEEccccC--ccchHHHHHHHHHHhCCCCCCCCCceeE
Q 001384 794 AFTYSDILKATGKFSED-RIIGKGGFGTVYRGVLP-DGREVAVKKLQREG--LEGEREFRAEMEVLSGNGFGWPHPNLVT 869 (1088)
Q Consensus 794 ~~~~~~~~~~~~~~~~~-~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~~~~~l~h~niv~ 869 (1088)
...+.......++|.+. +.||+|+||.||+|++. +++.||||++.... ......+.+|+.++.... +||||++
T Consensus 17 n~~~~~~~~~~~~y~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~---~~~~iv~ 93 (327)
T 3lm5_A 17 NLYFQSMENFNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAK---SCPRVIN 93 (327)
T ss_dssp CCCSBCHHHHHHHEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTT---TCTTBCC
T ss_pred hhHHHHHHhhhhEEeeccceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhcc---CCCCEEE
Confidence 34444555667788887 89999999999999976 68999999997643 233567889999998743 6899999
Q ss_pred EeeEEecCCeEEEEEEecCCCCHHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcC---C
Q 001384 870 LYGWCLDGSEKILVYEYMEGGSLEDIISDR--TRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDK---E 944 (1088)
Q Consensus 870 l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~--~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~---~ 944 (1088)
+++++.+....++||||+++|+|.+++... ..+++.+++.++.|++.||+|||++ +|+||||||+||+++. +
T Consensus 94 ~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~ql~~~L~~LH~~---givH~Dikp~NIl~~~~~~~ 170 (327)
T 3lm5_A 94 LHEVYENTSEIILILEYAAGGEIFSLCLPELAEMVSENDVIRLIKQILEGVYYLHQN---NIVHLDLKPQNILLSSIYPL 170 (327)
T ss_dssp EEEEEECSSEEEEEEECCTTEEGGGGGSSCC-CCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEESCBTTB
T ss_pred EEEEEEeCCeEEEEEEecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHC---CeecCcCChHHEEEecCCCC
Confidence 999999999999999999999999998653 5799999999999999999999999 9999999999999997 7
Q ss_pred CCEEEeecccceeecCCCCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhh
Q 001384 945 GKALVTDFGLARVVSAGDSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVM 1024 (1088)
Q Consensus 945 ~~~kl~Dfg~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~ 1024 (1088)
+.+||+|||+++...... ......||+.|+|||++.+..++.++||||+|+++|+|++|+.||.+.............
T Consensus 171 ~~~kL~Dfg~a~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~ 248 (327)
T 3lm5_A 171 GDIKIVDFGMSRKIGHAC--ELREIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSPFVGEDNQETYLNISQV 248 (327)
T ss_dssp CCEEECCGGGCEEC-----------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHT
T ss_pred CcEEEeeCccccccCCcc--ccccccCCcCccCCeeecCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHhc
Confidence 899999999998764322 233457899999999999999999999999999999999999999876542221111111
Q ss_pred ccCCCCCCccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1025 GYGRHGPGRAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1025 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
.... . ..........+.+++.+|++.||++||+++|+++
T Consensus 249 ~~~~---~------------~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~~ll~ 287 (327)
T 3lm5_A 249 NVDY---S------------EETFSSVSQLATDFIQSLLVKNPEKRPTAEICLS 287 (327)
T ss_dssp CCCC---C------------TTTTTTSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred cccc---C------------chhhcccCHHHHHHHHHHcCCChhhCcCHHHHhC
Confidence 0000 0 0011223456888999999999999999999875
No 183
>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...
Probab=100.00 E-value=4.3e-37 Score=338.73 Aligned_cols=252 Identities=24% Similarity=0.352 Sum_probs=207.1
Q ss_pred cCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccC-ccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeEE
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREG-LEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEKI 881 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~~ 881 (1088)
.++|++.+.||+|+||.||+|+++ +++.||||++.... ....+.+.+|+.+++. ++||||+++++++.+++..+
T Consensus 6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~----l~h~~i~~~~~~~~~~~~~~ 81 (276)
T 2yex_A 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKM----LNHENVVKFYGHRREGNIQY 81 (276)
T ss_dssp HHHEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCTTHHHHHHHHHHHHHT----CCCTTBCCEEEEEEETTEEE
T ss_pred ecceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccchhhhHHHHHHHHHHHh----cCCCCceeeeeEEEcCCEEE
Confidence 357899999999999999999976 68999999997543 2334678899999987 67999999999999999999
Q ss_pred EEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccceeecCC
Q 001384 882 LVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARVVSAG 961 (1088)
Q Consensus 882 lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~~~~ 961 (1088)
+||||+++++|.+++.....+++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||.+......
T Consensus 82 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~ 158 (276)
T 2yex_A 82 LFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGI---GITHRDIKPENLLLDERDNLKISDFGLATVFRYN 158 (276)
T ss_dssp EEEECCTTEEGGGGSBTTTBCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCTTCEECEET
T ss_pred EEEEecCCCcHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCChHHEEEccCCCEEEeeCCCccccCCC
Confidence 9999999999999998888899999999999999999999999 9999999999999999999999999999876432
Q ss_pred CC-cccccccccccccCccccCCCCC-CcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCCCCCccccchh
Q 001384 962 DS-HVSTTIAGTVGYVAPEYGQTWQA-TTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRHGPGRAVIPVV 1039 (1088)
Q Consensus 962 ~~-~~~~~~~gt~~y~aPE~~~~~~~-~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1039 (1088)
.. .......|+..|+|||.+.+..+ +.++||||+|+++|||++|+.||.........+......... ..
T Consensus 159 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~-------~~-- 229 (276)
T 2yex_A 159 NRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTY-------LN-- 229 (276)
T ss_dssp TEECCBCCCCSCGGGCCGGGGTCSSBCHHHHHHHHHHHHHHHHHHSSCCCSCSCTTSHHHHHHHTTCTT-------ST--
T ss_pred cchhcccCCccccCccChHHHhcCCCCCCcchHHHHHHHHHHHHhCCCCCCCCchHHHHHHHhhhcccc-------cC--
Confidence 21 22344678999999999887665 789999999999999999999998765432222222110000 00
Q ss_pred hcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1040 LLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1040 ~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
........+.+++.+|++.||++||+++|+++
T Consensus 230 -------~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~ 261 (276)
T 2yex_A 230 -------PWKKIDSAPLALLHKILVENPSARITIPDIKK 261 (276)
T ss_dssp -------TGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred -------chhhcCHHHHHHHHHHCCCCchhCCCHHHHhc
Confidence 01123356788999999999999999999975
No 184
>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}
Probab=100.00 E-value=1.6e-37 Score=349.58 Aligned_cols=260 Identities=22% Similarity=0.300 Sum_probs=204.8
Q ss_pred cCCCCccceecccCceEEEEEEe-CCCcEEEEEEccccCccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEe----cCC
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVL-PDGREVAVKKLQREGLEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCL----DGS 878 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~----~~~ 878 (1088)
.++|++.+.||+|+||.||+|+. .+++.||||++........+.+.+|+++++. ++||||+++++++. ...
T Consensus 28 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~----l~h~~iv~~~~~~~~~~~~~~ 103 (317)
T 2buj_A 28 NKHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRL----FNHPNILRLVAYCLRERGAKH 103 (317)
T ss_dssp TEEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHT----CCCTTBCCCCEEEEEEETTEE
T ss_pred CeEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecCCHHHHHHHHHHHHHHhh----cCCCCeeeEEEEEEeccCCCc
Confidence 35789999999999999999997 4789999999976655556788999999987 67999999999987 345
Q ss_pred eEEEEEEecCCCCHHHHHhh----cCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeeccc
Q 001384 879 EKILVYEYMEGGSLEDIISD----RTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGL 954 (1088)
Q Consensus 879 ~~~lv~e~~~~gsL~~~l~~----~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~ 954 (1088)
..++||||+++|+|.+++.. ...+++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||.
T Consensus 104 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~dlkp~NIl~~~~~~~kl~dfg~ 180 (317)
T 2buj_A 104 EAWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIHAK---GYAHRDLKPTNILLGDEGQPVLMDLGS 180 (317)
T ss_dssp EEEEEEECCTTCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEECCCSS
T ss_pred eeEEEEEeCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEEcCCCCEEEEecCc
Confidence 78999999999999999875 45799999999999999999999999 999999999999999999999999999
Q ss_pred ceeecCCCCc--------ccccccccccccCccccCCCC---CCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhh
Q 001384 955 ARVVSAGDSH--------VSTTIAGTVGYVAPEYGQTWQ---ATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRV 1023 (1088)
Q Consensus 955 a~~~~~~~~~--------~~~~~~gt~~y~aPE~~~~~~---~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~ 1023 (1088)
+......... ......||+.|+|||.+.... ++.++||||||+++|||++|+.||..............
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~ 260 (317)
T 2buj_A 181 MNQACIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQKGDSVALAV 260 (317)
T ss_dssp CEESCEEEESHHHHHHHHHHHHHHSCGGGCCGGGSSCCSEEEECTHHHHHHHHHHHHHHHHSSCTTHHHHHTTSCHHHHH
T ss_pred chhcccccccccccccccccccccCCcccCCHhHhccCCCcCCCchhhHHHHHHHHHHHHhCCCChhhhhcccchhhHHh
Confidence 8765321111 012345799999999887543 68999999999999999999999964211000001111
Q ss_pred hccCCCCCCccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhhCCC
Q 001384 1024 MGYGRHGPGRAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKILPH 1086 (1088)
Q Consensus 1024 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i~~~ 1086 (1088)
.. . ...+........+.+++.+|++.||.+||+++|+++.|+++...
T Consensus 261 ~~-~---------------~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~~~~~ 307 (317)
T 2buj_A 261 QN-Q---------------LSIPQSPRHSSALWQLLNSMMTVDPHQRPHIPLLLSQLEALQPP 307 (317)
T ss_dssp HC-C-----------------CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTCCC
T ss_pred hc-c---------------CCCCccccCCHHHHHHHHHHhhcChhhCCCHHHHHHHhhhcCCC
Confidence 10 0 00011122345788999999999999999999999999998654
No 185
>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...
Probab=100.00 E-value=4.6e-37 Score=339.99 Aligned_cols=245 Identities=25% Similarity=0.363 Sum_probs=205.9
Q ss_pred CCCCccceecccCceEEEEEEeC-CCcEEEEEEccccC---ccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeE
Q 001384 805 GKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREG---LEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEK 880 (1088)
Q Consensus 805 ~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~ 880 (1088)
++|++.+.||+|+||.||+|++. +++.||||++.... ......+.+|+++++. ++||||+++++++.+.+..
T Consensus 14 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~----l~h~~i~~~~~~~~~~~~~ 89 (284)
T 2vgo_A 14 DDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSH----LRHPNILRMYNYFHDRKRI 89 (284)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHT----CCCTTBCCEEEEEECSSEE
T ss_pred hhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhc----CCCCCEeeEEEEEEcCCEE
Confidence 46889999999999999999976 57889999997542 2234678899999987 6799999999999999999
Q ss_pred EEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccceeecC
Q 001384 881 ILVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARVVSA 960 (1088)
Q Consensus 881 ~lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~~~ 960 (1088)
++||||+++|+|.+++.....+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||++.....
T Consensus 90 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~ 166 (284)
T 2vgo_A 90 YLMLEFAPRGELYKELQKHGRFDEQRSATFMEELADALHYCHER---KVIHRDIKPENLLMGYKGELKIADFGWSVHAPS 166 (284)
T ss_dssp EEEECCCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCSGGGEEECTTCCEEECCCTTCEECSS
T ss_pred EEEEEeCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCHHHEEEcCCCCEEEecccccccCcc
Confidence 99999999999999999888899999999999999999999999 999999999999999999999999999976543
Q ss_pred CCCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCCCCCccccchhh
Q 001384 961 GDSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRHGPGRAVIPVVL 1040 (1088)
Q Consensus 961 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1040 (1088)
. ......|+..|+|||.+.+..++.++||||+|+++|+|++|+.||....... ..........
T Consensus 167 ~---~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~--~~~~~~~~~~------------ 229 (284)
T 2vgo_A 167 L---RRRTMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPSHTE--THRRIVNVDL------------ 229 (284)
T ss_dssp S---CBCCCCSCGGGCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHHH--HHHHHHTTCC------------
T ss_pred c---ccccccCCCCcCCHHHhccCCCCcccchhhHHHHHHHHHHCCCCCCCCCHhH--HHHHHhcccc------------
Confidence 2 2334578999999999999899999999999999999999999998754321 1112211000
Q ss_pred cCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1041 LGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1041 ~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
..+......+.+++.+|++.||.+||+++|+++
T Consensus 230 -----~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~ 262 (284)
T 2vgo_A 230 -----KFPPFLSDGSKDLISKLLRYHPPQRLPLKGVME 262 (284)
T ss_dssp -----CCCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred -----CCCCcCCHHHHHHHHHHhhcCHhhCCCHHHHhh
Confidence 011223356788999999999999999999985
No 186
>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*
Probab=100.00 E-value=4.2e-37 Score=362.91 Aligned_cols=262 Identities=23% Similarity=0.301 Sum_probs=196.7
Q ss_pred cCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccC--ccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecC---
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREG--LEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDG--- 877 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~--- 877 (1088)
.++|++.+.||+|+||+||+|++. +++.||||++.+.. ....+.+.+|+.+++. ++||||+++++++...
T Consensus 61 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~----l~hpnIv~l~~~~~~~~~~ 136 (464)
T 3ttj_A 61 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKC----VNHKNIISLLNVFTPQKTL 136 (464)
T ss_dssp ETTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHH----CCCTTBCCCSEEECSCCST
T ss_pred cCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHHh----CCCCCCCcEEEEEccCCcc
Confidence 478999999999999999999975 68999999997642 2334578899999987 6799999999999654
Q ss_pred ---CeEEEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeeccc
Q 001384 878 ---SEKILVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGL 954 (1088)
Q Consensus 878 ---~~~~lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~ 954 (1088)
...|+||||+++ ++.+.+.. .+++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+
T Consensus 137 ~~~~~~~lv~E~~~~-~l~~~~~~--~l~~~~~~~~~~qil~aL~~lH~~---~iiHrDlkp~NIll~~~~~~kl~DFG~ 210 (464)
T 3ttj_A 137 EEFQDVYLVMELMDA-NLCQVIQM--ELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGL 210 (464)
T ss_dssp TTCCEEEEEEECCSE-EHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCCC
T ss_pred ccCCeEEEEEeCCCC-CHHHHHhh--cCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCChHhEEEeCCCCEEEEEEEe
Confidence 457999999976 57777654 489999999999999999999999 999999999999999999999999999
Q ss_pred ceeecCCCCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCC-----
Q 001384 955 ARVVSAGDSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRH----- 1029 (1088)
Q Consensus 955 a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~----- 1029 (1088)
++..... .......||+.|+|||++.+..|+.++||||+||++|||++|+.||.+... ...+.......+..
T Consensus 211 a~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pF~g~~~-~~~~~~i~~~lg~p~~~~~ 287 (464)
T 3ttj_A 211 ARTAGTS--FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDY-IDQWNKVIEQLGTPCPEFM 287 (464)
T ss_dssp C-----C--CCC----CCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSH-HHHHHHHHHHHCSCCHHHH
T ss_pred eeecCCC--cccCCCcccccccCHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCH-HHHHHHHHHhcCCCCHHHH
Confidence 9876432 234456899999999999999999999999999999999999999987643 11221111100000
Q ss_pred ---------------CCCc----cccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1030 ---------------GPGR----AVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1030 ---------------~~~~----~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
.... ...+................++.+++.+|++.||++|||++|+++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~ 355 (464)
T 3ttj_A 288 KKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQ 355 (464)
T ss_dssp TTSCHHHHHHHTTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred HHcchhhhhHhhcccccCCCChHHhCcccccccccccccccCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence 0000 000000000111111223567899999999999999999999975
No 187
>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...
Probab=100.00 E-value=1.9e-37 Score=345.67 Aligned_cols=257 Identities=30% Similarity=0.450 Sum_probs=202.1
Q ss_pred CCCCccceecccCceEEEEEEeCC----CcEEEEEEccccCc-cchHHHHHHHHHHhCCCCCCCCCceeEEeeEEe-cCC
Q 001384 805 GKFSEDRIIGKGGFGTVYRGVLPD----GREVAVKKLQREGL-EGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCL-DGS 878 (1088)
Q Consensus 805 ~~~~~~~~LG~G~~g~Vy~~~~~~----~~~vavK~~~~~~~-~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~-~~~ 878 (1088)
.+|++.+.||+|+||+||+|++.+ +..||+|++..... ...+.+.+|++++++ ++||||+++++++. .++
T Consensus 25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l~~----l~h~~iv~~~~~~~~~~~ 100 (298)
T 3f66_A 25 LIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKD----FSHPNVLSLLGICLRSEG 100 (298)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHHHHHHT----CCCTTBCCCCEEECCSSS
T ss_pred eehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHHHHHHh----CCCCCEeeeeeEEEcCCC
Confidence 468888999999999999999642 23589999876432 234678899999997 67999999999864 456
Q ss_pred eEEEEEEecCCCCHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeeccccee
Q 001384 879 EKILVYEYMEGGSLEDIISDR-TRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARV 957 (1088)
Q Consensus 879 ~~~lv~e~~~~gsL~~~l~~~-~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~ 957 (1088)
..++||||+++|+|.++++.. ..+++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++.
T Consensus 101 ~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~ql~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~a~~ 177 (298)
T 3f66_A 101 SPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASK---KFVHRDLAARNCMLDEKFTVKVADFGLARD 177 (298)
T ss_dssp CCEEEEECCTTCBHHHHHHCTTCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTCCEEECSCGGGCC
T ss_pred ceEEEEeCCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCchheEEECCCCCEEECccccccc
Confidence 789999999999999999763 4589999999999999999999999 999999999999999999999999999987
Q ss_pred ecCCCC---cccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHh-CCcCCCCCchhHHHHHHhhhccCCCCCCc
Q 001384 958 VSAGDS---HVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELAT-GRRALEGGEECLVEWGRRVMGYGRHGPGR 1033 (1088)
Q Consensus 958 ~~~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 1033 (1088)
...... .......+|+.|+|||.+.+..++.++||||+|+++|+|++ |..||......... .....
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~~~~~~--~~~~~-------- 247 (298)
T 3f66_A 178 MYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDIT--VYLLQ-------- 247 (298)
T ss_dssp CSCGGGCBC-----CCBCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTSCTTTHH--HHHHT--------
T ss_pred ccccchhccccccCCCCCccccChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCccCCHHHHH--HHHhc--------
Confidence 643321 12234567789999999988899999999999999999999 55555544321111 11110
Q ss_pred cccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhhCCC
Q 001384 1034 AVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKILPH 1086 (1088)
Q Consensus 1034 ~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i~~~ 1086 (1088)
+.....+...+..+.+++.+|++.||++||+++|+++.|+++++.
T Consensus 248 --------~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~~~~~ 292 (298)
T 3f66_A 248 --------GRRLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFST 292 (298)
T ss_dssp --------TCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred --------CCCCCCCccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHh
Confidence 001111222345788999999999999999999999999998754
No 188
>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*
Probab=100.00 E-value=4.8e-37 Score=341.72 Aligned_cols=248 Identities=22% Similarity=0.315 Sum_probs=206.8
Q ss_pred cCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCc---cchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCe
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGL---EGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSE 879 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~ 879 (1088)
.++|.+.+.||+|+||.||+|.+. +++.||+|++..... ...+.+.+|+.+++. ++||||+++++++.+++.
T Consensus 14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~----l~h~~iv~~~~~~~~~~~ 89 (294)
T 2rku_A 14 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRS----LAHQHVVGFHGFFEDNDF 89 (294)
T ss_dssp TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHT----CCCTTBCCEEEEEECSSE
T ss_pred ccceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHh----CCCCCEeeeeeeeccCCE
Confidence 357889999999999999999986 578999999876532 234568889999987 679999999999999999
Q ss_pred EEEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccceeec
Q 001384 880 KILVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARVVS 959 (1088)
Q Consensus 880 ~~lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~~ 959 (1088)
.++||||+++++|.+++.....+++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||.+....
T Consensus 90 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~ 166 (294)
T 2rku_A 90 VFVVLELCRRRSLLELHKRRKALTEPEARYYLRQIVLGCQYLHRN---RVIHRDLKLGNLFLNEDLEVKIGDFGLATKVE 166 (294)
T ss_dssp EEEEEECCTTCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEECC
T ss_pred EEEEEecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChHhEEEcCCCCEEEEeccCceecc
Confidence 999999999999999998888899999999999999999999999 99999999999999999999999999998764
Q ss_pred CCCCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCCCCCccccchh
Q 001384 960 AGDSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRHGPGRAVIPVV 1039 (1088)
Q Consensus 960 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1039 (1088)
... .......||+.|+|||.+.+..++.++||||+|+++|+|++|+.||........ + ........
T Consensus 167 ~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~-~-~~~~~~~~----------- 232 (294)
T 2rku_A 167 YDG-ERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKET-Y-LRIKKNEY----------- 232 (294)
T ss_dssp STT-CCBCCCCSCCSSCCHHHHTTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHHHH-H-HHHHTTCC-----------
T ss_pred cCc-cccccccCCCCcCCcchhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHH-H-HHHhhccC-----------
Confidence 322 223445789999999999988899999999999999999999999987543211 1 11110000
Q ss_pred hcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1040 LLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1040 ~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
..+......+.+++.+|++.||++||+++|+++
T Consensus 233 ------~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~ 265 (294)
T 2rku_A 233 ------SIPKHINPVAASLIQKMLQTDPTARPTINELLN 265 (294)
T ss_dssp ------CCCTTSCHHHHHHHHHHTCSSGGGSCCGGGGGG
T ss_pred ------CCccccCHHHHHHHHHHcccChhhCcCHHHHhh
Confidence 001122356788999999999999999999986
No 189
>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}
Probab=100.00 E-value=3.2e-37 Score=340.11 Aligned_cols=247 Identities=23% Similarity=0.376 Sum_probs=183.2
Q ss_pred CCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCc---cchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeE
Q 001384 805 GKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGL---EGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEK 880 (1088)
Q Consensus 805 ~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~ 880 (1088)
++|++.+.||+|+||.||+|++. +|+.||||++..... ...+.+.+|++++.+ ++||||+++++++.+.+..
T Consensus 11 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~----l~h~~i~~~~~~~~~~~~~ 86 (278)
T 3cok_A 11 EDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQ----LKHPSILELYNYFEDSNYV 86 (278)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTT----BCCTTBCCEEEEEECSSEE
T ss_pred ccceeeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHh----CCCCCeEeEEEEEccCCeE
Confidence 56899999999999999999974 789999999975421 223678899999986 6799999999999999999
Q ss_pred EEEEEecCCCCHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccceeec
Q 001384 881 ILVYEYMEGGSLEDIISDR-TRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARVVS 959 (1088)
Q Consensus 881 ~lv~e~~~~gsL~~~l~~~-~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~~ 959 (1088)
++||||+++++|.+++... .++++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||.+....
T Consensus 87 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~ 163 (278)
T 3cok_A 87 YLVLEMCHNGEMNRYLKNRVKPFSENEARHFMHQIITGMLYLHSH---GILHRDLTLSNLLLTRNMNIKIADFGLATQLK 163 (278)
T ss_dssp EEEEECCTTEEHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSSCCGGGEEECTTCCEEECCCTTCEECC
T ss_pred EEEEecCCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCCEEEEeecceeecc
Confidence 9999999999999999875 5699999999999999999999999 99999999999999999999999999998764
Q ss_pred CCCCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCCCCCccccchh
Q 001384 960 AGDSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRHGPGRAVIPVV 1039 (1088)
Q Consensus 960 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1039 (1088)
.... ......||+.|+|||.+.+..++.++||||+|+++|||++|+.||....... ...... .
T Consensus 164 ~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~--~~~~~~------------~-- 226 (278)
T 3cok_A 164 MPHE-KHYTLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTDTVKN--TLNKVV------------L-- 226 (278)
T ss_dssp -----------------------------CTHHHHHHHHHHHHHHSSCSSCCCSCC-------CC------------S--
T ss_pred CCCC-cceeccCCCCcCCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCChhHHH--HHHHHh------------h--
Confidence 3221 2234568999999999998899999999999999999999999998643210 000000 0
Q ss_pred hcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1040 LLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1040 ~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
.....+.....++.+++.+|++.||++||+++|+++
T Consensus 227 ---~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~ 262 (278)
T 3cok_A 227 ---ADYEMPSFLSIEAKDLIHQLLRRNPADRLSLSSVLD 262 (278)
T ss_dssp ---SCCCCCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred ---cccCCccccCHHHHHHHHHHcccCHhhCCCHHHHhc
Confidence 000012223457888999999999999999999975
No 190
>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}
Probab=100.00 E-value=9.4e-38 Score=352.83 Aligned_cols=271 Identities=25% Similarity=0.359 Sum_probs=210.7
Q ss_pred CCCCccceecccCceEEEEEEe-----CCCcEEEEEEccccCccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCC-
Q 001384 805 GKFSEDRIIGKGGFGTVYRGVL-----PDGREVAVKKLQREGLEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGS- 878 (1088)
Q Consensus 805 ~~~~~~~~LG~G~~g~Vy~~~~-----~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~- 878 (1088)
++|++.+.||+|+||.||+|+. .+++.||||++........+.+.+|++++++ ++||||+++++++...+
T Consensus 41 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~----l~h~~iv~~~~~~~~~~~ 116 (326)
T 2w1i_A 41 RHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKS----LQHDNIVKYKGVCYSAGR 116 (326)
T ss_dssp GGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCCSHHHHHHHHHHHHHHT----CCCTTBCCEEEEECC---
T ss_pred HHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCCHHHHHHHHHHHHHHHh----CCCCCeeeEEEEEEecCC
Confidence 5688999999999999999983 3688999999987655556789999999997 67999999999987654
Q ss_pred -eEEEEEEecCCCCHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccce
Q 001384 879 -EKILVYEYMEGGSLEDIISDR-TRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLAR 956 (1088)
Q Consensus 879 -~~~lv~e~~~~gsL~~~l~~~-~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~ 956 (1088)
..++||||+++++|.++++.. ..+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++
T Consensus 117 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dikp~NIli~~~~~~kL~Dfg~~~ 193 (326)
T 2w1i_A 117 RNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVENENRVKIGDFGLTK 193 (326)
T ss_dssp -CCEEEECCCTTCBHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEEEETTEEEECCCTTCE
T ss_pred CceEEEEECCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhC---CEeccCCCcceEEEcCCCcEEEecCcchh
Confidence 689999999999999999875 4699999999999999999999999 99999999999999999999999999998
Q ss_pred eecCCCCcc--cccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCCCC-Cc
Q 001384 957 VVSAGDSHV--STTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRHGP-GR 1033 (1088)
Q Consensus 957 ~~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~-~~ 1033 (1088)
......... .....++..|+|||.+.+..++.++||||||+++|||++|..||........ ........... ..
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~---~~~~~~~~~~~~~~ 270 (326)
T 2w1i_A 194 VLPQDKEYYKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFM---RMIGNDKQGQMIVF 270 (326)
T ss_dssp ECCSSCSEEECSSCCSCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHHTTCGGGSHHHHHH---HHHCTTCCTHHHHH
T ss_pred hccccccccccccCCCCceeEECchhhcCCCCCchhhHHHHHHHHHHHHhcCCCCCCCHHHHH---HhhccccchhhhHH
Confidence 775433211 2234567789999998888899999999999999999999999875321111 11100000000 00
Q ss_pred cccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhhCC
Q 001384 1034 AVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKILP 1085 (1088)
Q Consensus 1034 ~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i~~ 1085 (1088)
........+...+.+...+.++.+++.+|++.||++||++.|+++.|+++.+
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~el~~~L~~l~~ 322 (326)
T 2w1i_A 271 HLIELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRD 322 (326)
T ss_dssp HHHHHHHTTCCCCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCCCCCCCcccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHH
Confidence 0000111111122233445678899999999999999999999999998854
No 191
>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A
Probab=100.00 E-value=2.8e-37 Score=343.99 Aligned_cols=258 Identities=21% Similarity=0.306 Sum_probs=199.6
Q ss_pred HHcCCCCccceecccCceEEEEEEe-CCCcEEEEEEccccCccchHHHHHHHHHHhCCCCCCCCCceeE-EeeEEecCCe
Q 001384 802 KATGKFSEDRIIGKGGFGTVYRGVL-PDGREVAVKKLQREGLEGEREFRAEMEVLSGNGFGWPHPNLVT-LYGWCLDGSE 879 (1088)
Q Consensus 802 ~~~~~~~~~~~LG~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~~l~h~niv~-l~~~~~~~~~ 879 (1088)
...++|++.+.||+|+||.||+|++ .+++.||||++.... ....+..|++++.. +.|++++. +..++.....
T Consensus 6 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~e~~~l~~----l~~~~~i~~~~~~~~~~~~ 79 (296)
T 4hgt_A 6 RVGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKT--KHPQLHIESKIYKM----MQGGVGIPTIRWCGAEGDY 79 (296)
T ss_dssp -----CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC-----CCCHHHHHHHHHH----HTTSTTCCCEEEEEEETTE
T ss_pred ccCCceEEeeeecCCCCeEEEEEEEcCCCceEEEEeecccc--cchHHHHHHHHHHH----hcCCCCCCeeeeecCCCCc
Confidence 3457899999999999999999997 478999999876542 22357778888876 44665554 4445577788
Q ss_pred EEEEEEecCCCCHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEE---cCCCCEEEeecccc
Q 001384 880 KILVYEYMEGGSLEDIISD-RTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLL---DKEGKALVTDFGLA 955 (1088)
Q Consensus 880 ~~lv~e~~~~gsL~~~l~~-~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll---~~~~~~kl~Dfg~a 955 (1088)
.++||||+ +++|.+++.. ..++++.+++.++.|++.||+|||++ +|+||||||+||++ +.++.+||+|||++
T Consensus 80 ~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIl~~~~~~~~~~kL~Dfg~a 155 (296)
T 4hgt_A 80 NVMVMELL-GPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSK---NFIHRDVKPDNFLMGLGKKGNLVYIIDFGLA 155 (296)
T ss_dssp EEEEEECC-CCBHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECCGGGTTCEEECCCTTC
T ss_pred eEEEEEcc-CCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeeeeccCCCCeEEEecCccc
Confidence 89999999 8899999975 45799999999999999999999999 99999999999999 78999999999999
Q ss_pred eeecCCCCc------ccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCch-----hHHHHHHhhh
Q 001384 956 RVVSAGDSH------VSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEE-----CLVEWGRRVM 1024 (1088)
Q Consensus 956 ~~~~~~~~~------~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~-----~~~~~~~~~~ 1024 (1088)
+........ ......||+.|+|||.+.+..++.++||||+||++|||++|+.||.+... ..........
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~ 235 (296)
T 4hgt_A 156 KKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKM 235 (296)
T ss_dssp EECBCTTTCCBCCCCCSCCCCSCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHHH
T ss_pred eeccCcccCccCCCCcccccCCCccccchHHhcCCCCCchhHHHHHHHHHHHHhcCCCCCcccchhhhhhhhhhhhcccc
Confidence 887543321 22356789999999999999999999999999999999999999986432 1111111111
Q ss_pred ccCCCCCCccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhhCC
Q 001384 1025 GYGRHGPGRAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKILP 1085 (1088)
Q Consensus 1025 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i~~ 1085 (1088)
. ..........+.++.+++.+|++.||++||+++++++.|+++++
T Consensus 236 ~----------------~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~~~~ 280 (296)
T 4hgt_A 236 S----------------TPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFH 280 (296)
T ss_dssp H----------------SCHHHHTTTSCHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHH
T ss_pred c----------------chhhhhhccCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 0 00000001124578899999999999999999999999998864
No 192
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=100.00 E-value=2.4e-37 Score=377.34 Aligned_cols=253 Identities=24% Similarity=0.345 Sum_probs=201.7
Q ss_pred CCCccc-eecccCceEEEEEEeC---CCcEEEEEEccccCc-cchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeE
Q 001384 806 KFSEDR-IIGKGGFGTVYRGVLP---DGREVAVKKLQREGL-EGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEK 880 (1088)
Q Consensus 806 ~~~~~~-~LG~G~~g~Vy~~~~~---~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~ 880 (1088)
++.+.+ .||+|+||.||+|.++ ++..||||+++.... ...+++.+|++++++ ++|||||++++++.. +..
T Consensus 336 ~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~----l~hpniv~l~~~~~~-~~~ 410 (613)
T 2ozo_A 336 NLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQ----LDNPYIVRLIGVCQA-EAL 410 (613)
T ss_dssp SEEEEEEEEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSSTTHHHHHHHHHHHTT----CCCTTBCCEEEEEES-SSE
T ss_pred ceeEcCcEEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCChHHHHHHHHHHHHHHh----CCCCCEeeEEEEecc-CCe
Confidence 344444 7999999999999864 456799999987532 345789999999987 679999999999976 568
Q ss_pred EEEEEecCCCCHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccceeec
Q 001384 881 ILVYEYMEGGSLEDIISDR-TRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARVVS 959 (1088)
Q Consensus 881 ~lv~e~~~~gsL~~~l~~~-~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~~ 959 (1088)
++||||+++|+|.+++... ..+++.+++.++.||+.||+|||++ +|+||||||+||+++.++.+||+|||+++...
T Consensus 411 ~lv~E~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~~L~~LH~~---~iiHrDlkp~NILl~~~~~vkL~DFGla~~~~ 487 (613)
T 2ozo_A 411 MLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEK---NFVHRNLAARNVLLVNRHYAKISDFGLSKALG 487 (613)
T ss_dssp EEEEECCTTCBHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCCSTTTTCC
T ss_pred EEEEEeCCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHC---CEEcCcCCHHHEEEcCCCcEEEeeccCccccc
Confidence 9999999999999999754 4599999999999999999999999 99999999999999999999999999998764
Q ss_pred CCCCcc--cccccccccccCccccCCCCCCcchhHHHHHHHHHHHHh-CCcCCCCCchhHHHHHHhhhccCCCCCCcccc
Q 001384 960 AGDSHV--STTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELAT-GRRALEGGEECLVEWGRRVMGYGRHGPGRAVI 1036 (1088)
Q Consensus 960 ~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1036 (1088)
...... .....+++.|+|||++.+..++.++|||||||++|||++ |+.||.+...... ...+.
T Consensus 488 ~~~~~~~~~~~~~~~~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~~~--~~~i~------------ 553 (613)
T 2ozo_A 488 ADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEV--MAFIE------------ 553 (613)
T ss_dssp --------------CCTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCSHHH--HHHHH------------
T ss_pred CCCceeeeccCCCCccceeCHhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH--HHHHH------------
Confidence 332222 223345689999999988899999999999999999998 9999987644211 11111
Q ss_pred chhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhhC
Q 001384 1037 PVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKIL 1084 (1088)
Q Consensus 1037 ~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i~ 1084 (1088)
.+.....+..++.++.+++.+||+.||++||++++|++.|+.++
T Consensus 554 ----~~~~~~~p~~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~~ 597 (613)
T 2ozo_A 554 ----QGKRMECPPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRACY 597 (613)
T ss_dssp ----TTCCCCCCTTCCHHHHHHHHHTTCSSTTTSCCHHHHHHHHHHHH
T ss_pred ----cCCCCCCCCcCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHH
Confidence 01111123344568889999999999999999999999999874
No 193
>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}
Probab=100.00 E-value=3.1e-37 Score=345.95 Aligned_cols=244 Identities=28% Similarity=0.339 Sum_probs=193.6
Q ss_pred CCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCcc--chHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeEE
Q 001384 805 GKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGLE--GEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEKI 881 (1088)
Q Consensus 805 ~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~--~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~~ 881 (1088)
++|++.++||+|+||+||+|++. +++.||||++...... .......|+..+.+. .+||||+++++++.+++..+
T Consensus 57 ~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~---~~h~~iv~l~~~~~~~~~~~ 133 (311)
T 3p1a_A 57 QSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKV---GQHPCCVRLEQAWEEGGILY 133 (311)
T ss_dssp HHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHH---CCCTTBCCEEEEEEETTEEE
T ss_pred hheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHh---cCCCcEEEEEEEEEeCCEEE
Confidence 57999999999999999999986 7899999998764322 223445555555442 37999999999999999999
Q ss_pred EEEEecCCCCHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccceeecC
Q 001384 882 LVYEYMEGGSLEDIISDR-TRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARVVSA 960 (1088)
Q Consensus 882 lv~e~~~~gsL~~~l~~~-~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~~~ 960 (1088)
+||||+ +++|.+++... ..+++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++....
T Consensus 134 lv~e~~-~~~L~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIll~~~~~~kl~DFG~a~~~~~ 209 (311)
T 3p1a_A 134 LQTELC-GPSLQQHCEAWGASLPEAQVWGYLRDTLLALAHLHSQ---GLVHLDVKPANIFLGPRGRCKLGDFGLLVELGT 209 (311)
T ss_dssp EEEECC-CCBHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECGGGCEEECCCTTCEECC-
T ss_pred EEEecc-CCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCCHHHEEECCCCCEEEccceeeeeccc
Confidence 999999 66999888764 4699999999999999999999999 999999999999999999999999999987643
Q ss_pred CCCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCCCCCccccchhh
Q 001384 961 GDSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRHGPGRAVIPVVL 1040 (1088)
Q Consensus 961 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1040 (1088)
. .......||+.|+|||++.+ .++.++|||||||++|||++|..|+.+... |..... . ..+...
T Consensus 210 ~--~~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~el~~g~~~~~~~~~----~~~~~~-----~----~~~~~~ 273 (311)
T 3p1a_A 210 A--GAGEVQEGDPRYMAPELLQG-SYGTAADVFSLGLTILEVACNMELPHGGEG----WQQLRQ-----G----YLPPEF 273 (311)
T ss_dssp -------CCCCCGGGCCGGGGGT-CCSTHHHHHHHHHHHHHHHHTCCCCSSHHH----HHHHTT-----T----CCCHHH
T ss_pred C--CCCcccCCCccccCHhHhcC-CCCchhhHHHHHHHHHHHHhCCCCCCCccH----HHHHhc-----c----CCCccc
Confidence 2 22344568999999998876 799999999999999999999887765321 111110 0 001111
Q ss_pred cCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1041 LGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1041 ~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
+.....++.+++.+|++.||++||+++|+++
T Consensus 274 -------~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~ 304 (311)
T 3p1a_A 274 -------TAGLSSELRSVLVMMLEPDPKLRATAEALLA 304 (311)
T ss_dssp -------HTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred -------ccCCCHHHHHHHHHHcCCChhhCcCHHHHHh
Confidence 1123467889999999999999999999986
No 194
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*
Probab=100.00 E-value=1.2e-36 Score=363.51 Aligned_cols=250 Identities=25% Similarity=0.327 Sum_probs=201.2
Q ss_pred cCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccC--ccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeE
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREG--LEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEK 880 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~ 880 (1088)
.++|++.+.||+|+||+||+|+++ +++.||||++.+.. ......+.+|+.+++. ++||||+++++++.+....
T Consensus 36 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~----l~hpniv~~~~~~~~~~~~ 111 (494)
T 3lij_A 36 SEMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKL----LDHPNIMKLYDFFEDKRNY 111 (494)
T ss_dssp HHHEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHTT----CCCTTBCCEEEEEECSSEE
T ss_pred hcCeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHh----CCCCCCCeEEEEEEeCCEE
Confidence 346999999999999999999976 68899999997653 2335678999999987 6799999999999999999
Q ss_pred EEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCC---CCEEEeeccccee
Q 001384 881 ILVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKE---GKALVTDFGLARV 957 (1088)
Q Consensus 881 ~lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~---~~~kl~Dfg~a~~ 957 (1088)
++||||+++|+|.+++....++++.+++.++.||+.||+|||++ +|+||||||+||+++.. +.+||+|||+++.
T Consensus 112 ~lv~e~~~~g~L~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~kl~DfG~a~~ 188 (494)
T 3lij_A 112 YLVMECYKGGELFDEIIHRMKFNEVDAAVIIKQVLSGVTYLHKH---NIVHRDLKPENLLLESKEKDALIKIVDFGLSAV 188 (494)
T ss_dssp EEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCSSTTCCEEECCCTTCEE
T ss_pred EEEEecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCChhhEEEeCCCCCCcEEEEECCCCeE
Confidence 99999999999999998888899999999999999999999999 99999999999999764 4599999999987
Q ss_pred ecCCCCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCCCCCccccc
Q 001384 958 VSAGDSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRHGPGRAVIP 1037 (1088)
Q Consensus 958 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1037 (1088)
+.... ......||+.|+|||++.. .++.++||||+||++|+|++|+.||.+...... ............ .
T Consensus 189 ~~~~~--~~~~~~gt~~y~aPE~l~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~--~~~i~~~~~~~~-----~ 258 (494)
T 3lij_A 189 FENQK--KMKERLGTAYYIAPEVLRK-KYDEKCDVWSIGVILFILLAGYPPFGGQTDQEI--LRKVEKGKYTFD-----S 258 (494)
T ss_dssp CBTTB--CBCCCCSCTTTCCHHHHTT-CBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHH--HHHHHHTCCCCC-----S
T ss_pred CCCCc--cccccCCCcCeeCHHHHcc-cCCCchhHHHHHHHHHHHHhCCCCCCCCCHHHH--HHHHHhCCCCCC-----c
Confidence 75432 2345679999999998864 799999999999999999999999987654221 111111000000 0
Q ss_pred hhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1038 VVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1038 ~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
+........+.+++.+|++.||.+|||+.|+++
T Consensus 259 --------~~~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~ 291 (494)
T 3lij_A 259 --------PEWKNVSEGAKDLIKQMLQFDSQRRISAQQALE 291 (494)
T ss_dssp --------GGGTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred --------hhcccCCHHHHHHHHHHCCCChhhCccHHHHhc
Confidence 001122356888999999999999999999874
No 195
>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*
Probab=100.00 E-value=1.7e-37 Score=343.37 Aligned_cols=248 Identities=23% Similarity=0.362 Sum_probs=204.7
Q ss_pred HcCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEec-----
Q 001384 803 ATGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGLEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLD----- 876 (1088)
Q Consensus 803 ~~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~----- 876 (1088)
..++|++.+.||+|+||.||+|++. +++.||+|++.... ..+.+|++++++ ++||||+++++++..
T Consensus 9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~e~~~l~~----l~h~~i~~~~~~~~~~~~~~ 80 (284)
T 2a19_B 9 FGMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN----EKAEREVKALAK----LDHVNIVHYNGCWDGFDYDP 80 (284)
T ss_dssp HHHHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECCS----GGGHHHHHHHHH----CCCTTBCCEEEEEEEEEEC-
T ss_pred hccccceeeeeccCCceEEEEEEEcCCCeEEEEEEecccc----HHHHHHHHHHHh----CCCCCEEEEeeeEeccccCc
Confidence 3457999999999999999999986 78999999997652 356788999887 679999999998864
Q ss_pred -----------CCeEEEEEEecCCCCHHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcC
Q 001384 877 -----------GSEKILVYEYMEGGSLEDIISDR--TRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDK 943 (1088)
Q Consensus 877 -----------~~~~~lv~e~~~~gsL~~~l~~~--~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~ 943 (1088)
....++||||+++|+|.++++.. ..+++..++.++.|++.||+|||++ +|+||||||+||+++.
T Consensus 81 ~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~ 157 (284)
T 2a19_B 81 ETSSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHSK---KLINRDLKPSNIFLVD 157 (284)
T ss_dssp --------CCEEEEEEEEECCCCSCBHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEE
T ss_pred ccccccccccCcceEEEEEeccCCCCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeeccCCHHHEEEcC
Confidence 44579999999999999999754 5799999999999999999999999 9999999999999999
Q ss_pred CCCEEEeecccceeecCCCCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhh
Q 001384 944 EGKALVTDFGLARVVSAGDSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRV 1023 (1088)
Q Consensus 944 ~~~~kl~Dfg~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~ 1023 (1088)
++.+||+|||.+....... ......+++.|+|||.+.+..++.++||||||+++|||++|..|+..... +....
T Consensus 158 ~~~~kl~Dfg~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~----~~~~~ 231 (284)
T 2a19_B 158 TKQVKIGDFGLVTSLKNDG--KRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAFETSK----FFTDL 231 (284)
T ss_dssp TTEEEECCCTTCEESSCCS--CCCCCCSCCTTSCHHHHHCSCCCTHHHHHHHHHHHHHHHSCCSSHHHHHH----HHHHH
T ss_pred CCCEEECcchhheeccccc--cccccCCcccccChhhhccCCCcchhhhHHHHHHHHHHHhcCCcchhHHH----HHHHh
Confidence 9999999999998765432 23345689999999999988999999999999999999999998753211 11111
Q ss_pred hccCCCCCCccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhhCCC
Q 001384 1024 MGYGRHGPGRAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKILPH 1086 (1088)
Q Consensus 1024 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i~~~ 1086 (1088)
.. .. . +......+.+++.+|++.||++||++.|+++.|+.+.+.
T Consensus 232 ~~----~~----~-----------~~~~~~~~~~li~~~l~~dp~~Rps~~e~l~~l~~~~~~ 275 (284)
T 2a19_B 232 RD----GI----I-----------SDIFDKKEKTLLQKLLSKKPEDRPNTSEILRTLTVWKKS 275 (284)
T ss_dssp HT----TC----C-----------CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHTC-
T ss_pred hc----cc----c-----------cccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHhhC
Confidence 10 00 0 011224577899999999999999999999999988754
No 196
>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*
Probab=100.00 E-value=5.1e-37 Score=348.03 Aligned_cols=248 Identities=22% Similarity=0.315 Sum_probs=206.8
Q ss_pred cCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCc---cchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCe
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGL---EGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSE 879 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~ 879 (1088)
.++|.+.+.||+|+||.||+|++. +++.||+|++..... ...+.+.+|+.+++. ++||||+++++++.+.+.
T Consensus 40 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~----l~h~~iv~~~~~~~~~~~ 115 (335)
T 2owb_A 40 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRS----LAHQHVVGFHGFFEDNDF 115 (335)
T ss_dssp TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHT----CCCTTBCCEEEEEECSSE
T ss_pred CCceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHh----CCCCCCCeEEEEEecCCe
Confidence 457899999999999999999976 578999999876532 234578889999987 679999999999999999
Q ss_pred EEEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccceeec
Q 001384 880 KILVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARVVS 959 (1088)
Q Consensus 880 ~~lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~~ 959 (1088)
.++||||+++++|.+++.....+++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++...
T Consensus 116 ~~lv~e~~~~~~L~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~ 192 (335)
T 2owb_A 116 VFVVLELCRRRSLLELHKRRKALTEPEARYYLRQIVLGCQYLHRN---RVIHRDLKLGNLFLNEDLEVKIGDFGLATKVE 192 (335)
T ss_dssp EEEEECCCTTCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTCCEEECCCTTCEECC
T ss_pred EEEEEecCCCCCHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHC---CCEecCCCchhEEEcCCCCEEEeeccCceecc
Confidence 999999999999999998888899999999999999999999999 99999999999999999999999999998765
Q ss_pred CCCCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCCCCCccccchh
Q 001384 960 AGDSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRHGPGRAVIPVV 1039 (1088)
Q Consensus 960 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1039 (1088)
... .......|+..|+|||++.+..++.++||||||+++|||++|+.||........ + ........
T Consensus 193 ~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~-~-~~~~~~~~----------- 258 (335)
T 2owb_A 193 YDG-ERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKET-Y-LRIKKNEY----------- 258 (335)
T ss_dssp STT-CCBCCCCSCCSSCCHHHHHTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHHHH-H-HHHHHTCC-----------
T ss_pred cCc-ccccccCCCccccCHHHhccCCCCchhhHHHHHHHHHHHHHCcCCCCCCCHHHH-H-HHHhcCCC-----------
Confidence 322 223446789999999999888899999999999999999999999987543211 1 11110000
Q ss_pred hcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1040 LLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1040 ~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
..+......+.+++.+|++.||++||+++|+++
T Consensus 259 ------~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~ 291 (335)
T 2owb_A 259 ------SIPKHINPVAASLIQKMLQTDPTARPTINELLN 291 (335)
T ss_dssp ------CCCTTSCHHHHHHHHHHTCSSGGGSCCGGGGGG
T ss_pred ------CCCccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 001122346788999999999999999999986
No 197
>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*
Probab=100.00 E-value=2.2e-37 Score=378.41 Aligned_cols=248 Identities=28% Similarity=0.388 Sum_probs=201.1
Q ss_pred ceecccCceEEEEEEeC---CCcEEEEEEccccCc--cchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeEEEEEE
Q 001384 811 RIIGKGGFGTVYRGVLP---DGREVAVKKLQREGL--EGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEKILVYE 885 (1088)
Q Consensus 811 ~~LG~G~~g~Vy~~~~~---~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~~lv~e 885 (1088)
+.||+|+||+||+|.+. .++.||||+++.... ...+++.+|++++.+ ++|||||++++++.. +..++|||
T Consensus 375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~----l~hpnIv~l~~~~~~-~~~~lv~E 449 (635)
T 4fl3_A 375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQ----LDNPYIVRMIGICEA-ESWMLVME 449 (635)
T ss_dssp EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHH----CCCTTBCCEEEEEES-SSEEEEEE
T ss_pred CEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHh----CCCCCEeeEEEEEec-CCEEEEEE
Confidence 47999999999999653 467899999986532 235789999999997 679999999999865 55889999
Q ss_pred ecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccceeecCCCCc-
Q 001384 886 YMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARVVSAGDSH- 964 (1088)
Q Consensus 886 ~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~- 964 (1088)
|+++|+|.++++....+++.+++.|+.||+.||+|||++ +||||||||+||+++.++.+||+|||+++.+......
T Consensus 450 ~~~~g~L~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~---~iiHrDLkp~NILl~~~~~~kL~DFGla~~~~~~~~~~ 526 (635)
T 4fl3_A 450 MAELGPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLEES---NFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYY 526 (635)
T ss_dssp CCTTEEHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCTTHHHHTTC-----
T ss_pred ccCCCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHC---CEeCCCCChHhEEEeCCCCEEEEEcCCccccccCcccc
Confidence 999999999999888899999999999999999999999 9999999999999999999999999999876543321
Q ss_pred -ccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHh-CCcCCCCCchhHHHHHHhhhccCCCCCCccccchhhcC
Q 001384 965 -VSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELAT-GRRALEGGEECLVEWGRRVMGYGRHGPGRAVIPVVLLG 1042 (1088)
Q Consensus 965 -~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1042 (1088)
......+|..|+|||++....++.++|||||||++|||++ |+.||.+...... ...... +
T Consensus 527 ~~~~~~~~t~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~~~--~~~i~~----------------~ 588 (635)
T 4fl3_A 527 KAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEV--TAMLEK----------------G 588 (635)
T ss_dssp --------CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHH--HHHHHT----------------T
T ss_pred ccccCCCCceeeeChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHHH--HHHHHc----------------C
Confidence 2233456789999999998899999999999999999998 9999987654221 111110 0
Q ss_pred CCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhhC
Q 001384 1043 SGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKIL 1084 (1088)
Q Consensus 1043 ~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i~ 1084 (1088)
.....+..++.++.+++.+||+.||++||++++|++.|++++
T Consensus 589 ~~~~~p~~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~~ 630 (635)
T 4fl3_A 589 ERMGCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNYY 630 (635)
T ss_dssp CCCCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHH
Confidence 011112334567889999999999999999999999999875
No 198
>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=3.2e-37 Score=343.91 Aligned_cols=255 Identities=30% Similarity=0.404 Sum_probs=203.1
Q ss_pred CCCccceecccCceEEEEEEeCC----CcEEEEEEccccCc-cchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeE
Q 001384 806 KFSEDRIIGKGGFGTVYRGVLPD----GREVAVKKLQREGL-EGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEK 880 (1088)
Q Consensus 806 ~~~~~~~LG~G~~g~Vy~~~~~~----~~~vavK~~~~~~~-~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~ 880 (1088)
.|+..+.||+|+||+||+|++.+ +..||+|++..... ...+.+.+|++++++ ++||||+++++++.+.+..
T Consensus 22 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~----l~h~~iv~~~~~~~~~~~~ 97 (298)
T 3pls_A 22 VTHSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRG----LNHPNVLALIGIMLPPEGL 97 (298)
T ss_dssp EEEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHHHHHHT----CCCTTBCCCCEEECCSSSC
T ss_pred EEccCceeccCCCceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHHHHHHh----CCCCCeeeEEEEEecCCCC
Confidence 45567899999999999998532 23799999976433 234678899999997 6799999999999876655
Q ss_pred -EEEEEecCCCCHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccceee
Q 001384 881 -ILVYEYMEGGSLEDIISD-RTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARVV 958 (1088)
Q Consensus 881 -~lv~e~~~~gsL~~~l~~-~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~ 958 (1088)
++||||+.+|+|.+++.. ...+++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++..
T Consensus 98 ~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~ 174 (298)
T 3pls_A 98 PHVLLPYMCHGDLLQFIRSPQRNPTVKDLISFGLQVARGMEYLAEQ---KFVHRDLAARNCMLDESFTVKVADFGLARDI 174 (298)
T ss_dssp CEEEECCCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTCCEEECCTTSSCTT
T ss_pred cEEEEecccCCCHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCcceEEEcCCCcEEeCcCCCcccc
Confidence 999999999999999976 45689999999999999999999999 9999999999999999999999999999765
Q ss_pred cCCC---CcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCC-ch-hHHHHHHhhhccCCCCCCc
Q 001384 959 SAGD---SHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGG-EE-CLVEWGRRVMGYGRHGPGR 1033 (1088)
Q Consensus 959 ~~~~---~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~-~~-~~~~~~~~~~~~~~~~~~~ 1033 (1088)
.... ........++..|+|||...+..++.++||||+|+++|+|++|+.|+... .. ..........
T Consensus 175 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~~~~~~~~~~~~~~~~~~~~--------- 245 (298)
T 3pls_A 175 LDREYYSVQQHRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLTRGAPPYRHIDPFDLTHFLAQGR--------- 245 (298)
T ss_dssp TTGGGGCSCCSSCTTCGGGGSCHHHHTTCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCGGGHHHHHHTTC---------
T ss_pred cCCcccccccCcCCCCCccccChhhhccCCCChhhchhhHHHHHHHHhhCCCCCCccCCHHHHHHHhhcCC---------
Confidence 4322 11223456788999999999999999999999999999999966665443 22 1111111110
Q ss_pred cccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhhCCC
Q 001384 1034 AVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKILPH 1086 (1088)
Q Consensus 1034 ~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i~~~ 1086 (1088)
....+......+.+++.+|++.||.+||+++|+++.|++++++
T Consensus 246 ----------~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~l~~~~~~ 288 (298)
T 3pls_A 246 ----------RLPQPEYCPDSLYQVMQQCWEADPAVRPTFRVLVGEVEQIVSA 288 (298)
T ss_dssp ----------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred ----------CCCCCccchHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHH
Confidence 0111222345788999999999999999999999999998653
No 199
>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*
Probab=100.00 E-value=1e-36 Score=335.82 Aligned_cols=247 Identities=26% Similarity=0.379 Sum_probs=197.7
Q ss_pred cCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccC---ccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCe
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREG---LEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSE 879 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~ 879 (1088)
.++|++.+.||+|+||.||+|++. +|+.||||++.... ....+.+.+|+++++. ++||||+++++++.+.+.
T Consensus 10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~----l~h~~i~~~~~~~~~~~~ 85 (276)
T 2h6d_A 10 IGHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKL----FRHPHIIKLYQVISTPTD 85 (276)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHT----CCCTTBCCEEEEEECSSE
T ss_pred eccEEEEeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhc----CCCCCEeEEEEEEecCCe
Confidence 367999999999999999999986 78999999997542 2234578899999987 679999999999999999
Q ss_pred EEEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccceeec
Q 001384 880 KILVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARVVS 959 (1088)
Q Consensus 880 ~~lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~~ 959 (1088)
.++||||+++++|.+++....++++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||.+....
T Consensus 86 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~ 162 (276)
T 2h6d_A 86 FFMVMEYVSGGELFDYICKHGRVEEMEARRLFQQILSAVDYCHRH---MVVHRDLKPENVLLDAHMNAKIADFGLSNMMS 162 (276)
T ss_dssp EEEEEECCCSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHH---CSSCCCCCGGGEEECTTSCEEECCCCGGGCCC
T ss_pred EEEEEeccCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCChhhEEECCCCCEEEeecccccccC
Confidence 999999999999999998888899999999999999999999999 99999999999999999999999999998764
Q ss_pred CCCCcccccccccccccCccccCCCCC-CcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCCCCCccccch
Q 001384 960 AGDSHVSTTIAGTVGYVAPEYGQTWQA-TTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRHGPGRAVIPV 1038 (1088)
Q Consensus 960 ~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1038 (1088)
... ......+++.|+|||.+.+..+ +.++||||+|+++|+|++|+.||....... ..........
T Consensus 163 ~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~--~~~~~~~~~~---------- 228 (276)
T 2h6d_A 163 DGE--FLRTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDEHVPT--LFKKIRGGVF---------- 228 (276)
T ss_dssp C---------------CCTGGGTTSCCCHHHHHHHHHHHHHHHHHHSSCSSCCSSHHH--HHHHHHHCCC----------
T ss_pred CCc--ceecccCCccccCHHHHcCCCCCCccchHHHHHHHHHHHHhCCCCCCCCcHHH--HHHHhhcCcc----------
Confidence 322 2234568999999999887665 689999999999999999999998654321 1111110000
Q ss_pred hhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1039 VLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1039 ~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
..+......+.+++.+|++.||++||+++|+++
T Consensus 229 -------~~~~~~~~~l~~li~~~l~~~p~~Rps~~~~l~ 261 (276)
T 2h6d_A 229 -------YIPEYLNRSVATLLMHMLQVDPLKRATIKDIRE 261 (276)
T ss_dssp -------CCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred -------cCchhcCHHHHHHHHHHccCChhhCCCHHHHHh
Confidence 001122356888999999999999999999986
No 200
>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A
Probab=100.00 E-value=4.6e-37 Score=342.20 Aligned_cols=256 Identities=21% Similarity=0.309 Sum_probs=203.4
Q ss_pred cCCCCccceecccCceEEEEEEe-CCCcEEEEEEccccCccchHHHHHHHHHHhCCCCCCCCCceeE-EeeEEecCCeEE
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVL-PDGREVAVKKLQREGLEGEREFRAEMEVLSGNGFGWPHPNLVT-LYGWCLDGSEKI 881 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~~l~h~niv~-l~~~~~~~~~~~ 881 (1088)
.++|++.+.||+|+||.||+|++ .+++.||||++.... ...++.+|++++.. +.|++++. +..+...+...+
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~e~~~l~~----l~~~~~i~~~~~~~~~~~~~~ 81 (296)
T 3uzp_A 8 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKT--KHPQLHIESKIYKM----MQGGVGIPTIRWCGAEGDYNV 81 (296)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCS--SCCHHHHHHHHHHH----HTTSTTCCCEEEEEEETTEEE
T ss_pred ccEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCc--chhHHHHHHHHHHH----hhcCCCCCccccccCCCCceE
Confidence 46899999999999999999997 478999999987653 23467889998887 45666554 444556778889
Q ss_pred EEEEecCCCCHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEE---cCCCCEEEeeccccee
Q 001384 882 LVYEYMEGGSLEDIISD-RTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLL---DKEGKALVTDFGLARV 957 (1088)
Q Consensus 882 lv~e~~~~gsL~~~l~~-~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll---~~~~~~kl~Dfg~a~~ 957 (1088)
+||||+ +++|.++++. ..++++.+++.++.|++.||+|||++ +|+||||||+||++ +.++.+||+|||.++.
T Consensus 82 lv~e~~-~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~ 157 (296)
T 3uzp_A 82 MVMELL-GPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSK---NFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKK 157 (296)
T ss_dssp EEEECC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECCGGGTTCEEECCCTTCEE
T ss_pred EEEEec-CCCHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHeEEecCCCCCeEEEeeCCCccc
Confidence 999999 8899999974 45799999999999999999999999 99999999999999 4889999999999987
Q ss_pred ecCCCCc------ccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCch-----hHHHHHHhhhcc
Q 001384 958 VSAGDSH------VSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEE-----CLVEWGRRVMGY 1026 (1088)
Q Consensus 958 ~~~~~~~------~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~-----~~~~~~~~~~~~ 1026 (1088)
....... ......||+.|+|||.+.+..++.++||||||+++|||++|+.||.+... ............
T Consensus 158 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~ 237 (296)
T 3uzp_A 158 YRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMST 237 (296)
T ss_dssp CBCTTTCCBCCCCCSCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHHHHS
T ss_pred ccccccccccccccccccccccccCChhhhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCcCchhhhhhhhhhcccccCC
Confidence 7644321 12456799999999999999999999999999999999999999986422 111111111100
Q ss_pred CCCCCCccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhhCC
Q 001384 1027 GRHGPGRAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKILP 1085 (1088)
Q Consensus 1027 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i~~ 1085 (1088)
. ... .....+.++.+++.+|++.||++||+++||++.|++++.
T Consensus 238 ~---------~~~-------~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~ 280 (296)
T 3uzp_A 238 P---------IEV-------LCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFH 280 (296)
T ss_dssp C---------HHH-------HTTTSCHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHH
T ss_pred c---------hHH-------HHhhCCHHHHHHHHHHHhcCcCcCCCHHHHHHHHHHHHH
Confidence 0 000 011234578899999999999999999999999998864
No 201
>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A
Probab=100.00 E-value=1.1e-36 Score=348.91 Aligned_cols=259 Identities=26% Similarity=0.356 Sum_probs=208.2
Q ss_pred HHHHHHHcCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCcc--------chHHHHHHHHHHhCCCCCCCCCce
Q 001384 797 YSDILKATGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGLE--------GEREFRAEMEVLSGNGFGWPHPNL 867 (1088)
Q Consensus 797 ~~~~~~~~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~--------~~~~~~~E~~~l~~~~~~l~h~ni 867 (1088)
+.......++|++.+.||+|+||.||+|+++ +|+.||||++...... ..+.+.+|+.++.++. .||||
T Consensus 86 ~~~~~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~---~hp~i 162 (365)
T 2y7j_A 86 WAAAKEFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVA---GHPHI 162 (365)
T ss_dssp HHHHHHHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHT---TCTTB
T ss_pred chhhhhhhhhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhc---CCCCE
Confidence 3444556678999999999999999999986 7999999998754311 1345778999888632 69999
Q ss_pred eEEeeEEecCCeEEEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCE
Q 001384 868 VTLYGWCLDGSEKILVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKA 947 (1088)
Q Consensus 868 v~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~ 947 (1088)
+++++++......++||||+++++|.+++.....+++..++.++.||+.||+|||+. +|+||||||+||+++.++.+
T Consensus 163 v~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~~~l~~~~~~~i~~qi~~~L~~LH~~---gi~H~Dlkp~NIl~~~~~~i 239 (365)
T 2y7j_A 163 ITLIDSYESSSFMFLVFDLMRKGELFDYLTEKVALSEKETRSIMRSLLEAVSFLHAN---NIVHRDLKPENILLDDNMQI 239 (365)
T ss_dssp CCEEEEEEBSSEEEEEECCCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCE
T ss_pred eEEEEEEeeCCEEEEEEEeCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEECCCCCE
Confidence 999999999999999999999999999999888899999999999999999999999 99999999999999999999
Q ss_pred EEeecccceeecCCCCcccccccccccccCccccC------CCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHH
Q 001384 948 LVTDFGLARVVSAGDSHVSTTIAGTVGYVAPEYGQ------TWQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGR 1021 (1088)
Q Consensus 948 kl~Dfg~a~~~~~~~~~~~~~~~gt~~y~aPE~~~------~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~ 1021 (1088)
||+|||++..+.... ......||+.|+|||++. ...++.++|||||||++|||++|+.||........ ..
T Consensus 240 kl~DfG~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~--~~ 315 (365)
T 2y7j_A 240 RLSDFGFSCHLEPGE--KLRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFWHRRQILM--LR 315 (365)
T ss_dssp EECCCTTCEECCTTC--CBCCCCSCGGGCCHHHHHHTTCTTSCCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHH--HH
T ss_pred EEEecCcccccCCCc--ccccCCCCCCccChhhccccccccCcCCCchhhHHhHHHHHHHHHHCCCCCCCCCHHHH--HH
Confidence 999999998765432 234567999999999875 33688999999999999999999999987543211 11
Q ss_pred hhhccCCCCCCccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1022 RVMGYGRHGPGRAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1022 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
....... . ...+. .......+.+++.+|++.||++||+++|+++
T Consensus 316 ~i~~~~~-~----~~~~~--------~~~~~~~~~~li~~~L~~dP~~Rps~~ell~ 359 (365)
T 2y7j_A 316 MIMEGQY-Q----FSSPE--------WDDRSSTVKDLISRLLQVDPEARLTAEQALQ 359 (365)
T ss_dssp HHHHTCC-C----CCHHH--------HSSSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred HHHhCCC-C----CCCcc--------cccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 1110000 0 00000 0112356888999999999999999999986
No 202
>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*
Probab=100.00 E-value=5e-37 Score=347.18 Aligned_cols=266 Identities=23% Similarity=0.283 Sum_probs=196.2
Q ss_pred cCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCccc--hHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeE
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGLEG--EREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEK 880 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~--~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~ 880 (1088)
.++|++.+.||+|+||+||+|++. +++.||||++....... .+.+.+|++++++ ++||||+++++++.++...
T Consensus 33 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~----l~h~~iv~~~~~~~~~~~~ 108 (329)
T 3gbz_A 33 IDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKE----LQHRNIIELKSVIHHNHRL 108 (329)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGGG----CCCTTBCCEEEEEEETTEE
T ss_pred hhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHHH----cCCCCcceEEEEEecCCEE
Confidence 467999999999999999999965 78999999997653222 3467789999987 6799999999999999999
Q ss_pred EEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEc-----CCCCEEEeecccc
Q 001384 881 ILVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLD-----KEGKALVTDFGLA 955 (1088)
Q Consensus 881 ~lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~-----~~~~~kl~Dfg~a 955 (1088)
++||||+++ +|.+++.....+++.+++.++.|++.||+|||++ +|+||||||+||+++ .++.+||+|||++
T Consensus 109 ~lv~e~~~~-~L~~~~~~~~~~~~~~~~~i~~ql~~~l~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~~kl~Dfg~a 184 (329)
T 3gbz_A 109 HLIFEYAEN-DLKKYMDKNPDVSMRVIKSFLYQLINGVNFCHSR---RCLHRDLKPQNLLLSVSDASETPVLKIGDFGLA 184 (329)
T ss_dssp EEEEECCSE-EHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEC-----CCEEEECCTTHH
T ss_pred EEEEecCCC-CHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhC---CEECCCCCHHHEEEecCCCCccceEEECcCCCc
Confidence 999999985 9999999988899999999999999999999999 999999999999994 4556999999999
Q ss_pred eeecCCCCcccccccccccccCccccCCC-CCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHH-HhhhccCCCCCCc
Q 001384 956 RVVSAGDSHVSTTIAGTVGYVAPEYGQTW-QATTKGDVYSFGVLAMELATGRRALEGGEECLVEWG-RRVMGYGRHGPGR 1033 (1088)
Q Consensus 956 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~-~~~~~~~~~~~~~ 1033 (1088)
+...... .......+|..|+|||++.+. .++.++||||+||++|||++|+.||.+......... .............
T Consensus 185 ~~~~~~~-~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (329)
T 3gbz_A 185 RAFGIPI-RQFTHEIITLWYRPPEILLGSRHYSTSVDIWSIACIWAEMLMKTPLFPGDSEIDQLFKIFEVLGLPDDTTWP 263 (329)
T ss_dssp HHHC------------CCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCTTTST
T ss_pred cccCCcc-cccCCCcCCccccCHHHhcCCCCCCcHHHHHHHHHHHHHHHHCCCCcCCCCHHHHHHHHHHHhCCCchhhhh
Confidence 8764322 223345679999999988764 589999999999999999999999987654221111 1111111100000
Q ss_pred --cccch------hhcCCCcc--ccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1034 --AVIPV------VLLGSGLA--EGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1034 --~~~~~------~~~~~~~~--~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
...+. ........ .......++.+++.+|++.||++||+++|+++
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 318 (329)
T 3gbz_A 264 GVTALPDWKQSFPKFRGKTLKRVLGALLDDEGLDLLTAMLEMDPVKRISAKNALE 318 (329)
T ss_dssp TGGGSTTCCTTCCCCCCCCHHHHHGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred hhhhhhhhhhhhhhhccccHhhhcccccCHHHHHHHHHHccCChhhCCCHHHHhC
Confidence 00000 00000000 01113357889999999999999999999986
No 203
>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}
Probab=100.00 E-value=6.2e-37 Score=351.87 Aligned_cols=252 Identities=14% Similarity=0.130 Sum_probs=204.0
Q ss_pred cCCCCccceecccCceEEEEEE------eCCCcEEEEEEccccCccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecC
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGV------LPDGREVAVKKLQREGLEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDG 877 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~------~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~ 877 (1088)
.++|++.+.||+|+||+||+|+ ..+++.||||++... ...++..|++++..+. ...|+||+++++++..+
T Consensus 64 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~---~~~~~~~e~~~~~~l~-~~~~~~iv~~~~~~~~~ 139 (365)
T 3e7e_A 64 SKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPA---NPWEFYIGTQLMERLK-PSMQHMFMKFYSAHLFQ 139 (365)
T ss_dssp SSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSC---CHHHHHHHHHHHHHSC-GGGGGGBCCEEEEEECS
T ss_pred CEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCC---ChhHHHHHHHHHHHhh-hhhhhhhhhhheeeecC
Confidence 4679999999999999999994 346889999999765 3456777777777643 24599999999999999
Q ss_pred CeEEEEEEecCCCCHHHHHhh-----cCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcC---------
Q 001384 878 SEKILVYEYMEGGSLEDIISD-----RTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDK--------- 943 (1088)
Q Consensus 878 ~~~~lv~e~~~~gsL~~~l~~-----~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~--------- 943 (1088)
+..++||||+++|+|.++++. ...+++.+++.|+.||+.||+|||++ +||||||||+|||++.
T Consensus 140 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~lH~~---~ivHrDiKp~NIll~~~~~~~~~~~ 216 (365)
T 3e7e_A 140 NGSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVHDC---EIIHGDIKPDNFILGNGFLEQDDED 216 (365)
T ss_dssp SCEEEEECCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCSGGGEEECGGGTCC----
T ss_pred CCcEEEEeccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHhhC---CeecCCCCHHHEEecccccCccccc
Confidence 999999999999999999974 45699999999999999999999999 9999999999999998
Q ss_pred --CCCEEEeecccceeecCC-CCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHH
Q 001384 944 --EGKALVTDFGLARVVSAG-DSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWG 1020 (1088)
Q Consensus 944 --~~~~kl~Dfg~a~~~~~~-~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~ 1020 (1088)
++.+||+|||+|+.+... .........||+.|+|||++.+..++.++|||||||++|||+||+.||......
T Consensus 217 ~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~----- 291 (365)
T 3e7e_A 217 DLSAGLALIDLGQSIDMKLFPKGTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGTYMKVKNEGG----- 291 (365)
T ss_dssp --CTTEEECCCTTCEEGGGSCTTEEECCSSCTTSCCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCCCEEEETT-----
T ss_pred cccCCEEEeeCchhhhhhccCCCceeeeecCCCCCCChHHhcCCCCCccccHHHHHHHHHHHHhCCCccccCCCC-----
Confidence 899999999999875422 223345567999999999999989999999999999999999999999653220
Q ss_pred HhhhccCCCCCCccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCC-CCHHHHHHHHHhhCC
Q 001384 1021 RRVMGYGRHGPGRAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNAR-PNVKEVLAMLIKILP 1085 (1088)
Q Consensus 1021 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~R-Ps~~eil~~L~~i~~ 1085 (1088)
........... .....+.+++..|++.+|.+| |+++++.+.|++++.
T Consensus 292 ------------~~~~~~~~~~~------~~~~~~~~~~~~~l~~~p~~r~~~~~~l~~~l~~~l~ 339 (365)
T 3e7e_A 292 ------------ECKPEGLFRRL------PHLDMWNEFFHVMLNIPDCHHLPSLDLLRQKLKKVFQ 339 (365)
T ss_dssp ------------EEEECSCCTTC------SSHHHHHHHHHHHHCCCCTTCCCCHHHHHHHHHHHHH
T ss_pred ------------ceeechhcccc------CcHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHH
Confidence 00000000000 123456678889999999999 578888888888754
No 204
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=100.00 E-value=7.4e-37 Score=376.38 Aligned_cols=248 Identities=27% Similarity=0.338 Sum_probs=207.4
Q ss_pred cCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccC---ccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCe
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREG---LEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSE 879 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~ 879 (1088)
.++|++.++||+|+||+||+|+++ +++.||||++++.. ....+.+..|..++.... +||+|+++++++.+.+.
T Consensus 340 ~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~---~~~~i~~l~~~~~~~~~ 416 (674)
T 3pfq_A 340 LTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPG---KPPFLTQLHSCFQTMDR 416 (674)
T ss_dssp CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTT---CCTTBCCEEEECBCSSE
T ss_pred ccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhcc---CCCeEEEEEEEEEeCCE
Confidence 467999999999999999999976 68899999997642 223456788888887643 79999999999999999
Q ss_pred EEEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccceeec
Q 001384 880 KILVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARVVS 959 (1088)
Q Consensus 880 ~~lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~~ 959 (1088)
.|+||||+++|+|.++++..+++++.+++.|+.||+.||+|||++ +||||||||+|||++.++++||+|||+++...
T Consensus 417 ~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~---gIiHrDLKp~NILl~~~g~ikL~DFGla~~~~ 493 (674)
T 3pfq_A 417 LYFVMEYVNGGDLMYHIQQVGRFKEPHAVFYAAEIAIGLFFLQSK---GIIYRDLKLDNVMLDSEGHIKIADFGMCKENI 493 (674)
T ss_dssp EEEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---SEECCCCCSTTEEECSSSCEEECCCTTCEECC
T ss_pred EEEEEeCcCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CeEeccCChhhEEEcCCCcEEEeecceeeccc
Confidence 999999999999999999888999999999999999999999999 99999999999999999999999999998643
Q ss_pred CCCCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCCCCCccccchh
Q 001384 960 AGDSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRHGPGRAVIPVV 1039 (1088)
Q Consensus 960 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1039 (1088)
.. ........||+.|+|||++.+..|+.++|||||||++|||++|+.||.+.... +....+.....
T Consensus 494 ~~-~~~~~~~~GT~~Y~APE~l~~~~~~~~~DvwSlGvilyelltG~~Pf~~~~~~--~~~~~i~~~~~----------- 559 (674)
T 3pfq_A 494 WD-GVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDED--ELFQSIMEHNV----------- 559 (674)
T ss_dssp CT-TCCBCCCCSCSSSCCHHHHTCCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHSSCC-----------
T ss_pred cC-CcccccccCCCcccCHhhhcCCCCCccceEechHHHHHHHHcCCCCCCCCCHH--HHHHHHHhCCC-----------
Confidence 22 22345678999999999999999999999999999999999999999876442 22222221110
Q ss_pred hcCCCccccHHHHHHHHHHHhhhcccCCCCCCCH-----HHHH
Q 001384 1040 LLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNV-----KEVL 1077 (1088)
Q Consensus 1040 ~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~-----~eil 1077 (1088)
..+.....++.+++.+|++.||++||++ +||+
T Consensus 560 ------~~p~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~ei~ 596 (674)
T 3pfq_A 560 ------AYPKSMSKEAVAICKGLMTKHPGKRLGCGPEGERDIK 596 (674)
T ss_dssp ------CCCTTSCHHHHHHHHHHSCSSSTTCTTCSTTHHHHHH
T ss_pred ------CCCccCCHHHHHHHHHHccCCHHHCCCCCCCcHHHHh
Confidence 0122234578889999999999999997 6654
No 205
>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...
Probab=100.00 E-value=3e-37 Score=353.90 Aligned_cols=265 Identities=23% Similarity=0.343 Sum_probs=205.9
Q ss_pred CCCCccceecccCceEEEEEEeC-CCcEEEEEEccccC-ccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeEEE
Q 001384 805 GKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREG-LEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEKIL 882 (1088)
Q Consensus 805 ~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~~l 882 (1088)
++|++.+.||+|+||.||+|.+. +++.||+|++.... ....+.+.+|++++.. ++||||+++++++.+++..++
T Consensus 33 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~l~~----l~h~~iv~~~~~~~~~~~~~l 108 (360)
T 3eqc_A 33 DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHE----CNSPYIVGFYGAFYSDGEISI 108 (360)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCCCHHHHHHHHHHHGGGGG----CCCTTBCCEEEEEEETTEEEE
T ss_pred ccceeeeeecCCCCeEEEEEEECCCCcEEEEEEeccccCHHHHHHHHHHHHHHHH----CCCCCEEEEeEEEEECCEEEE
Confidence 57899999999999999999976 68999999998653 2234578899999987 679999999999999999999
Q ss_pred EEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccceeecCCC
Q 001384 883 VYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARVVSAGD 962 (1088)
Q Consensus 883 v~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~~~~~ 962 (1088)
||||+++|+|.++++....+++..+..++.|++.||+|||+++ +|+||||||+||+++.++.+||+|||++.....
T Consensus 109 v~e~~~~~~L~~~l~~~~~~~~~~~~~i~~~i~~~l~~lh~~~--~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~-- 184 (360)
T 3eqc_A 109 CMEHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKH--KIMHRDVKPSNILVNSRGEIKLCDFGVSGQLID-- 184 (360)
T ss_dssp EECCCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHH--CCCCSCCSGGGEEECTTCCEEECCCCCCHHHHH--
T ss_pred EEECCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhC--CEEcCCccHHHEEECCCCCEEEEECCCCccccc--
Confidence 9999999999999998888999999999999999999999842 899999999999999999999999999875532
Q ss_pred CcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCC-------------
Q 001384 963 SHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRH------------- 1029 (1088)
Q Consensus 963 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~------------- 1029 (1088)
.......||+.|+|||++.+..++.++||||+|+++|+|++|+.||....................
T Consensus 185 -~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (360)
T 3eqc_A 185 -SMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAETPPRPRTPGRP 263 (360)
T ss_dssp -HC----CCCCTTCCHHHHTTCCCSHHHHHHHHHHHHHHHHHTSCCSSCCCHHHHHHHHC--------------------
T ss_pred -ccccCCCCCCCeECHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcccccccCCCCCCCcccCCCc
Confidence 122345789999999999999999999999999999999999999987654322221110000000
Q ss_pred -----------CCCccccchhhcCCCccc-cHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1030 -----------GPGRAVIPVVLLGSGLAE-GAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1030 -----------~~~~~~~~~~~~~~~~~~-~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
....+..+.......... ......++.+++.+|++.||++||+++|+++
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 324 (360)
T 3eqc_A 264 LNKFGMDSRPPMAIFELLDYIVNEPPPKLPSGVFSLEFQDFVNKCLIKNPAERADLKQLMV 324 (360)
T ss_dssp ----------CCCHHHHHHHHHHSCCCCCCTTTSCHHHHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred ccccccCCCCcccchhhhhHHhccCCCCCCcccccHHHHHHHHHHhhcChhhCCCHHHHhh
Confidence 000000011111111111 1123457889999999999999999999975
No 206
>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.7e-37 Score=354.72 Aligned_cols=258 Identities=16% Similarity=0.216 Sum_probs=204.0
Q ss_pred cCCCCccceecccCceEEEEEEeCC---------CcEEEEEEccccCccchHHHHHHHHHHhCCCCCCCCCceeE-----
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLPD---------GREVAVKKLQREGLEGEREFRAEMEVLSGNGFGWPHPNLVT----- 869 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~~---------~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~~l~h~niv~----- 869 (1088)
.++|++.+.||+|+||.||+|++.. ++.||||++... +.+.+|++++.+ ++||||++
T Consensus 41 ~~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~-----~~~~~E~~~l~~----l~h~niv~~~~~~ 111 (352)
T 2jii_A 41 GRQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD-----GRLFNEQNFFQR----AAKPLQVNKWKKL 111 (352)
T ss_dssp SCEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT-----STHHHHHHHHHH----HCCHHHHHHHHHH
T ss_pred CCeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc-----chHHHHHHHHHH----hcccchhhhhhhh
Confidence 3679999999999999999999763 789999998754 357788888886 56988887
Q ss_pred ----------EeeEEec-CCeEEEEEEecCCCCHHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCC
Q 001384 870 ----------LYGWCLD-GSEKILVYEYMEGGSLEDIISDR--TRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKA 936 (1088)
Q Consensus 870 ----------l~~~~~~-~~~~~lv~e~~~~gsL~~~l~~~--~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp 936 (1088)
+++++.. +...++||||+ +++|.+++... ..+++.+++.++.|++.||+|||++ +|+||||||
T Consensus 112 ~~~~~~~i~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dikp 187 (352)
T 2jii_A 112 YSTPLLAIPTCMGFGVHQDKYRFLVLPSL-GRSLQSALDVSPKHVLSERSVLQVACRLLDALEFLHEN---EYVHGNVTA 187 (352)
T ss_dssp TTCTTCSCCCCCEEEEETTTEEEEEEECC-CEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCCG
T ss_pred ccCCccCccchhhccccCCcEEEEEecCC-CcCHHHHHHhCCcCCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCCH
Confidence 6677765 67889999999 99999999876 6799999999999999999999999 999999999
Q ss_pred CCEEEcCCC--CEEEeecccceeecCCCCc------ccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcC
Q 001384 937 SNVLLDKEG--KALVTDFGLARVVSAGDSH------VSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRA 1008 (1088)
Q Consensus 937 ~NIll~~~~--~~kl~Dfg~a~~~~~~~~~------~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p 1008 (1088)
+||+++.++ .+||+|||+++.+...... ......||+.|+|||++.+..++.++||||||+++|||++|+.|
T Consensus 188 ~NIl~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p 267 (352)
T 2jii_A 188 ENIFVDPEDQSQVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISMDLHKGCGPSRRSDLQSLGYCMLKWLYGFLP 267 (352)
T ss_dssp GGEEEETTEEEEEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCT
T ss_pred HHEEEcCCCCceEEEecCcceeeccCCCccccccccccccccCCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCC
Confidence 999999998 9999999999876532211 12345789999999999998999999999999999999999999
Q ss_pred CCCCch---hHHHHHHhhhccCCCCCCccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhhCC
Q 001384 1009 LEGGEE---CLVEWGRRVMGYGRHGPGRAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKILP 1085 (1088)
Q Consensus 1009 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i~~ 1085 (1088)
|..... ............. ....+... .....+.++.+++.+|++.||++||+++|+++.|+++++
T Consensus 268 f~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~------~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~ 336 (352)
T 2jii_A 268 WTNCLPNTEDIMKQKQKFVDKP-----GPFVGPCG------HWIRPSETLQKYLKVVMALTYEEKPPYAMLRNNLEALLQ 336 (352)
T ss_dssp TGGGTTCHHHHHHHHHHHHHSC-----CCEECTTS------CEECCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHH
T ss_pred cccCCcCHHHHHHHHHhccCCh-----hhhhhhcc------ccCCCcHHHHHHHHHHHhCChhhCCCHHHHHHHHHHHHH
Confidence 986532 1212211111000 00000000 001123678889999999999999999999999999864
No 207
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*
Probab=100.00 E-value=1.3e-36 Score=362.70 Aligned_cols=250 Identities=26% Similarity=0.352 Sum_probs=204.6
Q ss_pred cCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccC--ccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeE
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREG--LEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEK 880 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~ 880 (1088)
.++|++.+.||+|+||+||+|+++ +++.||||++.+.. ......+.+|++++++ ++||||+++++++.+....
T Consensus 21 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~----l~hpniv~~~~~~~~~~~~ 96 (486)
T 3mwu_A 21 AERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKK----LDHPNIMKLFEILEDSSSF 96 (486)
T ss_dssp HHHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHH----CCCTTBCCEEEEEECSSEE
T ss_pred hcceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHHh----CCCCCcCeEEEEEEcCCEE
Confidence 457999999999999999999976 78999999986532 2345678999999997 6799999999999999999
Q ss_pred EEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEc---CCCCEEEeeccccee
Q 001384 881 ILVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLD---KEGKALVTDFGLARV 957 (1088)
Q Consensus 881 ~lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~---~~~~~kl~Dfg~a~~ 957 (1088)
++||||+++|+|.+++....++++.+++.++.|++.||+|||++ +|+||||||+||+++ .++.+||+|||+++.
T Consensus 97 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~ 173 (486)
T 3mwu_A 97 YIVGELYTGGELFDEIIKRKRFSEHDAARIIKQVFSGITYMHKH---NIVHRDLKPENILLESKEKDCDIKIIDFGLSTC 173 (486)
T ss_dssp EEEECCCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEESSSSTTCCEEECSCSCTTT
T ss_pred EEEEEcCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCchHHEEEecCCCCCCEEEEECCcCeE
Confidence 99999999999999998888999999999999999999999999 999999999999995 456799999999986
Q ss_pred ecCCCCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCCCCCccccc
Q 001384 958 VSAGDSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRHGPGRAVIP 1037 (1088)
Q Consensus 958 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1037 (1088)
+... .......||+.|+|||++.+ .++.++||||+||++|+|++|+.||.+..............+.. .
T Consensus 174 ~~~~--~~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~--~------ 242 (486)
T 3mwu_A 174 FQQN--TKMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGKNEYDILKRVETGKYAF--D------ 242 (486)
T ss_dssp BCCC------CCTTGGGGCCGGGGGS-CCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCS--C------
T ss_pred CCCC--CccCCCcCCCCCCCHHHhCC-CCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCC--C------
Confidence 6432 22344579999999999876 69999999999999999999999998765422211111110000 0
Q ss_pred hhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1038 VVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1038 ~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
.+.......++.+++.+|++.||.+||++.|+++
T Consensus 243 -------~~~~~~~s~~~~~li~~~L~~dp~~R~t~~~~l~ 276 (486)
T 3mwu_A 243 -------LPQWRTISDDAKDLIRKMLTFHPSLRITATQCLE 276 (486)
T ss_dssp -------SGGGGGSCHHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred -------CcccCCCCHHHHHHHHHHcCCChhhCcCHHHHhc
Confidence 0111223457889999999999999999999986
No 208
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B
Probab=100.00 E-value=3.5e-37 Score=366.49 Aligned_cols=244 Identities=26% Similarity=0.345 Sum_probs=202.4
Q ss_pred CCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCc---cchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeE
Q 001384 805 GKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGL---EGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEK 880 (1088)
Q Consensus 805 ~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~ 880 (1088)
++|++.++||+|+||.||+|+++ +|+.||+|++.+... .....+..|++++.+ ++||||+++++++.+....
T Consensus 185 ~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~----l~hp~Iv~l~~~~~~~~~l 260 (543)
T 3c4z_A 185 DWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAK----VHSRFIVSLAYAFETKTDL 260 (543)
T ss_dssp GGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHH----CCCTTBCCEEEEEECSSEE
T ss_pred hheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHh----cCCCCEeeEEEEEeeCCEE
Confidence 56888899999999999999986 689999999976432 234578889999987 6799999999999999999
Q ss_pred EEEEEecCCCCHHHHHhhc----CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccce
Q 001384 881 ILVYEYMEGGSLEDIISDR----TRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLAR 956 (1088)
Q Consensus 881 ~lv~e~~~~gsL~~~l~~~----~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~ 956 (1088)
|+||||++||+|.+++... ..+++..++.++.||+.||+|||++ +|+||||||+||+++.++.+||+|||+++
T Consensus 261 ~lVmE~~~gg~L~~~l~~~~~~~~~l~e~~~~~~~~qi~~aL~~LH~~---gIvHrDLKP~NILl~~~g~vkL~DFGla~ 337 (543)
T 3c4z_A 261 CLVMTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQR---NIIYRDLKPENVLLDDDGNVRISDLGLAV 337 (543)
T ss_dssp EEEECCCTTCBHHHHHHTSSTTSCSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEECCCTTCE
T ss_pred EEEEEeccCCCHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHc---CCcccCCChHHEEEeCCCCEEEeecceee
Confidence 9999999999999999764 3699999999999999999999999 99999999999999999999999999998
Q ss_pred eecCCCCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCch--hHHHHHHhhhccCCCCCCcc
Q 001384 957 VVSAGDSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEE--CLVEWGRRVMGYGRHGPGRA 1034 (1088)
Q Consensus 957 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~--~~~~~~~~~~~~~~~~~~~~ 1034 (1088)
....... ......||+.|+|||++.+..++.++||||+||++|||++|+.||.+..+ ...+....+.....
T Consensus 338 ~~~~~~~-~~~~~~GT~~Y~APE~l~~~~~~~~~DiwSlGvilyelltG~~PF~~~~~~~~~~~~~~~i~~~~~------ 410 (543)
T 3c4z_A 338 ELKAGQT-KTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVENKELKQRVLEQAV------ 410 (543)
T ss_dssp ECCTTCC-CBCCCCSCTTTSCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCTTCCCCHHHHHHHHHHCCC------
T ss_pred eccCCCc-ccccccCCccccChhhhcCCCCChHHhcCcchHHHHHHHhCCCCCCCCccchhHHHHHHHHhhccc------
Confidence 7654322 23445899999999999999999999999999999999999999987532 12222222221100
Q ss_pred ccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCH
Q 001384 1035 VIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNV 1073 (1088)
Q Consensus 1035 ~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~ 1073 (1088)
..+......+.+++.+|++.||++||++
T Consensus 411 -----------~~p~~~s~~~~~li~~lL~~dP~~R~~~ 438 (543)
T 3c4z_A 411 -----------TYPDKFSPASKDFCEALLQKDPEKRLGF 438 (543)
T ss_dssp -----------CCCTTSCHHHHHHHHHHSCSSGGGSCCC
T ss_pred -----------CCCcccCHHHHHHHHHhccCCHhHCCCC
Confidence 1122234578889999999999999975
No 209
>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*
Probab=100.00 E-value=3.9e-37 Score=349.03 Aligned_cols=258 Identities=28% Similarity=0.405 Sum_probs=208.9
Q ss_pred cCCCCccceecccCceEEEEEEeCC-C-----cEEEEEEccccCc-cchHHHHHHHHHHhCCCCCCCCCceeEEeeEEec
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLPD-G-----REVAVKKLQREGL-EGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLD 876 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~~-~-----~~vavK~~~~~~~-~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~ 876 (1088)
.++|++.+.||+|+||.||+|.+.. + +.||+|++..... ...+.+.+|++++..+. +||||+++++++.+
T Consensus 45 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~---~h~~iv~~~~~~~~ 121 (333)
T 2i1m_A 45 RNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLG---QHENIVNLLGACTH 121 (333)
T ss_dssp TTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHHHC---CCTTBCCEEEEECS
T ss_pred HHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHHHhhc---CCCCeeeEEEEEec
Confidence 4789999999999999999999642 2 4799999986532 23457889999998732 79999999999999
Q ss_pred CCeEEEEEEecCCCCHHHHHhhc--------------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEc
Q 001384 877 GSEKILVYEYMEGGSLEDIISDR--------------TRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLD 942 (1088)
Q Consensus 877 ~~~~~lv~e~~~~gsL~~~l~~~--------------~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~ 942 (1088)
++..++||||+++|+|.+++... ..+++.+++.++.|++.||+|||++ +|+||||||+||+++
T Consensus 122 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~NIl~~ 198 (333)
T 2i1m_A 122 GGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLASK---NCIHRDVAARNVLLT 198 (333)
T ss_dssp SSSCEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGCEEE
T ss_pred CCceEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHhcC---CcccCCcccceEEEC
Confidence 99999999999999999999753 3579999999999999999999999 999999999999999
Q ss_pred CCCCEEEeecccceeecCCCCc-ccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHh-CCcCCCCCchhHHHHH
Q 001384 943 KEGKALVTDFGLARVVSAGDSH-VSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELAT-GRRALEGGEECLVEWG 1020 (1088)
Q Consensus 943 ~~~~~kl~Dfg~a~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~ellt-g~~p~~~~~~~~~~~~ 1020 (1088)
.++.+||+|||+++........ ......+|+.|+|||.+.+..++.++||||||+++|||++ |..||.+.......+.
T Consensus 199 ~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~~~~ 278 (333)
T 2i1m_A 199 NGHVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGILVNSKFYK 278 (333)
T ss_dssp GGGEEEBCCCGGGCCGGGCTTSEECSSCEECGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCSSHHHHH
T ss_pred CCCeEEECccccccccccccceeecCCCCCCccccCHHHhccCCCChHHHHHHHHHHHHHHHcCCCCCCcccchhHHHHH
Confidence 9999999999999876443322 2334567889999999888899999999999999999998 9999986543211111
Q ss_pred HhhhccCCCCCCccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhhC
Q 001384 1021 RRVMGYGRHGPGRAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKIL 1084 (1088)
Q Consensus 1021 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i~ 1084 (1088)
....... ...+...+..+.+++.+|++.||.+||++.|+++.|+++.
T Consensus 279 ~~~~~~~-----------------~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~~ 325 (333)
T 2i1m_A 279 LVKDGYQ-----------------MAQPAFAPKNIYSIMQACWALEPTHRPTFQQICSFLQEQA 325 (333)
T ss_dssp HHHHTCC-----------------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred HHhcCCC-----------------CCCCCCCCHHHHHHHHHHhccChhhCcCHHHHHHHHHHHH
Confidence 1111000 0011222457888999999999999999999999999874
No 210
>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}
Probab=100.00 E-value=3.6e-37 Score=347.54 Aligned_cols=265 Identities=22% Similarity=0.312 Sum_probs=196.1
Q ss_pred CCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCccc-hHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeEEE
Q 001384 805 GKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGLEG-EREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEKIL 882 (1088)
Q Consensus 805 ~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~-~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~~l 882 (1088)
++|++.+.||+|+||+||+|++. +++.||||++....... ...+.+|+++++. ++||||+++++++.++...++
T Consensus 2 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~----l~h~~iv~~~~~~~~~~~~~l 77 (324)
T 3mtl_A 2 ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKD----LKHANIVTLHDIIHTEKSLTL 77 (324)
T ss_dssp CSEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC------CCCCCCCHHHHSC----CCCTTBCCEEEEEECSSCEEE
T ss_pred CceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEecccccccchhHHHHHHHHHh----cCCCCCCeeeeEEeeCCEEEE
Confidence 57899999999999999999976 78999999997543221 1234578999986 679999999999999999999
Q ss_pred EEEecCCCCHHHHHhhcC-CCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccceeecCC
Q 001384 883 VYEYMEGGSLEDIISDRT-RLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARVVSAG 961 (1088)
Q Consensus 883 v~e~~~~gsL~~~l~~~~-~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~~~~ 961 (1088)
||||+++ +|.+++.... .+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++.....
T Consensus 78 v~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~ 153 (324)
T 3mtl_A 78 VFEYLDK-DLKQYLDDCGNIINMHNVKLFLFQLLRGLAYCHRQ---KVLHRDLKPQNLLINERGELKLADFGLARAKSIP 153 (324)
T ss_dssp EEECCSE-EHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHT---TEEESSCCGGGEEECTTCCEEECSSSEEECC---
T ss_pred Eeccccc-CHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCcCHHHEEECCCCCEEEccCcccccccCC
Confidence 9999975 9999887654 599999999999999999999999 9999999999999999999999999999865432
Q ss_pred CCcccccccccccccCccccCC-CCCCcchhHHHHHHHHHHHHhCCcCCCCCch-hHHHHHHhhhccCCCCCCccccchh
Q 001384 962 DSHVSTTIAGTVGYVAPEYGQT-WQATTKGDVYSFGVLAMELATGRRALEGGEE-CLVEWGRRVMGYGRHGPGRAVIPVV 1039 (1088)
Q Consensus 962 ~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwslG~~l~elltg~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 1039 (1088)
. .......+|+.|+|||++.+ ..++.++||||+||++|+|++|+.||.+... .........................
T Consensus 154 ~-~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 232 (324)
T 3mtl_A 154 T-KTYDNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGSTVEEQLHFIFRILGTPTEETWPGILSNE 232 (324)
T ss_dssp ----------CGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGCH
T ss_pred c-cccccccCcccccChhhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChHhchhhhcch
Confidence 2 22334568999999998765 5789999999999999999999999987654 2222222222111111111100000
Q ss_pred ----------hcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1040 ----------LLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1040 ----------~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
..............++.+++.+|++.||++|||++|+++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 281 (324)
T 3mtl_A 233 EFKTYNYPKYRAEALLSHAPRLDSDGADLLTKLLQFEGRNRISAEDAMK 281 (324)
T ss_dssp HHHHTCCCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred hhcccccccccchhhhhhcCCCCHHHHHHHHHHcCcCcccCCCHHHHhc
Confidence 000000011123456789999999999999999999976
No 211
>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A
Probab=100.00 E-value=2.5e-36 Score=335.20 Aligned_cols=247 Identities=28% Similarity=0.433 Sum_probs=199.8
Q ss_pred CCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCc--cchHHHHHHHHHHhCCCCCCCCCceeEEeeEEec----C
Q 001384 805 GKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGL--EGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLD----G 877 (1088)
Q Consensus 805 ~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~----~ 877 (1088)
..|++.+.||+|+||.||+|.+. ++..||+|++..... ...+.+.+|+.++++ ++||||+++++++.. .
T Consensus 26 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~----l~h~~iv~~~~~~~~~~~~~ 101 (290)
T 1t4h_A 26 RFLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKG----LQHPNIVRFYDSWESTVKGK 101 (290)
T ss_dssp CEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTT----CCCTTBCCEEEEEEEESSSC
T ss_pred eeEEeeeeccCCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHHh----CCCCCeeeeeeeeccccCCC
Confidence 34778889999999999999975 678999999876532 234568899999987 679999999998875 4
Q ss_pred CeEEEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCC--eEecCCCCCCEEEc-CCCCEEEeeccc
Q 001384 878 SEKILVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPP--IVHRDVKASNVLLD-KEGKALVTDFGL 954 (1088)
Q Consensus 878 ~~~~lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~--ivH~DLkp~NIll~-~~~~~kl~Dfg~ 954 (1088)
...++||||+++|+|.++++....+++..++.++.|++.||+|||+. + |+||||||+||+++ .++.+||+|||+
T Consensus 102 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~~~i~H~dikp~Nil~~~~~~~~kl~Dfg~ 178 (290)
T 1t4h_A 102 KCIVLVTELMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLHTR---TPPIIHRDLKCDNIFITGPTGSVKIGDLGL 178 (290)
T ss_dssp EEEEEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTS---SSCCCCSCCCGGGEEESSTTSCEEECCTTG
T ss_pred ceEEEEEEecCCCCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHcC---CCCEEECCCCHHHEEEECCCCCEEEeeCCC
Confidence 56899999999999999999888899999999999999999999998 7 99999999999998 789999999999
Q ss_pred ceeecCCCCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCCCCCcc
Q 001384 955 ARVVSAGDSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRHGPGRA 1034 (1088)
Q Consensus 955 a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 1034 (1088)
+..... .......||+.|+|||++.+ .++.++||||+|+++|+|++|+.||.........+ ........ ..
T Consensus 179 ~~~~~~---~~~~~~~~t~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~-~~~~~~~~----~~ 249 (290)
T 1t4h_A 179 ATLKRA---SFAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIY-RRVTSGVK----PA 249 (290)
T ss_dssp GGGCCT---TSBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHHHH-HHHTTTCC----CG
T ss_pred cccccc---cccccccCCcCcCCHHHHhc-cCCCcchHHHHHHHHHHHHhCCCCCCCcCcHHHHH-HHHhccCC----cc
Confidence 975432 22344578999999998875 69999999999999999999999998754422222 22210000 00
Q ss_pred ccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1035 VIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1035 ~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
. .+.....++.+++.+|++.||++||+++|+++
T Consensus 250 ~-----------~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~ 282 (290)
T 1t4h_A 250 S-----------FDKVAIPEVKEIIEGCIRQNKDERYSIKDLLN 282 (290)
T ss_dssp G-----------GGGCCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred c-----------cCCCCCHHHHHHHHHHccCChhhCCCHHHHhh
Confidence 0 01112246889999999999999999999985
No 212
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*
Probab=100.00 E-value=9.1e-37 Score=364.23 Aligned_cols=250 Identities=28% Similarity=0.389 Sum_probs=207.1
Q ss_pred cCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccC---ccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCe
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREG---LEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSE 879 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~ 879 (1088)
.++|++.+.||+|+||.||+|+++ +|+.||||++.... ......+.+|++++++ ++||||+++++++.+...
T Consensus 25 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~----l~hpniv~~~~~~~~~~~ 100 (484)
T 3nyv_A 25 SDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQ----LDHPNIMKLYEFFEDKGY 100 (484)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTT----CCCTTBCCEEEEEECSSE
T ss_pred cCceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHh----CCCCCCCcEEEEEEeCCE
Confidence 357999999999999999999976 78999999987543 2345678999999987 679999999999999999
Q ss_pred EEEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEE---cCCCCEEEeecccce
Q 001384 880 KILVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLL---DKEGKALVTDFGLAR 956 (1088)
Q Consensus 880 ~~lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll---~~~~~~kl~Dfg~a~ 956 (1088)
.++||||+.+|+|.+++....++++.+++.++.|++.||+|||++ +|+||||||+||++ +.++.+||+|||+++
T Consensus 101 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~ 177 (484)
T 3nyv_A 101 FYLVGEVYTGGELFDEIISRKRFSEVDAARIIRQVLSGITYMHKN---KIVHRDLKPENLLLESKSKDANIRIIDFGLST 177 (484)
T ss_dssp EEEEECCCCSCBHHHHHHTCSCCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESSSSTTCCEEECCTTHHH
T ss_pred EEEEEecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCHHHEEEecCCCCCcEEEEeeeeeE
Confidence 999999999999999999888999999999999999999999999 99999999999999 567899999999998
Q ss_pred eecCCCCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCCCCCcccc
Q 001384 957 VVSAGDSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRHGPGRAVI 1036 (1088)
Q Consensus 957 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1036 (1088)
.+.... ......||+.|+|||++.+ .++.++||||+||++|+|++|+.||.+....... ..+........
T Consensus 178 ~~~~~~--~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~--~~i~~~~~~~~----- 247 (484)
T 3nyv_A 178 HFEASK--KMKDKIGTAYYIAPEVLHG-TYDEKCDVWSTGVILYILLSGCPPFNGANEYDIL--KKVEKGKYTFE----- 247 (484)
T ss_dssp HBCCCC--SHHHHTTGGGTCCHHHHHT-CCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHH--HHHHHCCCCCC-----
T ss_pred Eccccc--ccccCCCCccccCceeecC-CCCCcceeHHHHHHHHHHHHCCCCCCCCCHHHHH--HHHHcCCCCCC-----
Confidence 765332 2344579999999998876 7999999999999999999999999876542211 11110000000
Q ss_pred chhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1037 PVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1037 ~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
.+........+.+++.+|++.||++||++.|+++
T Consensus 248 --------~~~~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~ 281 (484)
T 3nyv_A 248 --------LPQWKKVSESAKDLIRKMLTYVPSMRISARDALD 281 (484)
T ss_dssp --------SGGGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred --------CcccccCCHHHHHHHHHHCCCChhHCcCHHHHhh
Confidence 0111223457888999999999999999999985
No 213
>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*
Probab=100.00 E-value=6e-37 Score=339.78 Aligned_cols=244 Identities=23% Similarity=0.328 Sum_probs=197.5
Q ss_pred HcCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccC--ccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCe
Q 001384 803 ATGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREG--LEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSE 879 (1088)
Q Consensus 803 ~~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~ 879 (1088)
..++|++.+.||+|+||+||+|++. +++.||||++.... .....++.+|+..+... .+||||+++++++.+++.
T Consensus 9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l---~~h~~iv~~~~~~~~~~~ 85 (289)
T 1x8b_A 9 YTTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVL---GQHSHVVRYFSAWAEDDH 85 (289)
T ss_dssp HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHS---CSCTTBCCEEEEEEETTE
T ss_pred ccchhhhhhhhcCCCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHHHHh---CCCCCeeeeeeeeecCCe
Confidence 3467999999999999999999986 78999999998643 23345678888888763 279999999999999999
Q ss_pred EEEEEEecCCCCHHHHHhhc----CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCC-----------
Q 001384 880 KILVYEYMEGGSLEDIISDR----TRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKE----------- 944 (1088)
Q Consensus 880 ~~lv~e~~~~gsL~~~l~~~----~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~----------- 944 (1088)
.++||||+++|+|.++++.. ..+++.+++.++.|++.||+|||++ +|+||||||+||+++.+
T Consensus 86 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dikp~NIl~~~~~~~~~~~~~~~ 162 (289)
T 1x8b_A 86 MLIQNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIHSM---SLVHMDIKPSNIFISRTSIPNAASEEGD 162 (289)
T ss_dssp EEEEEECCTTCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEC-------------
T ss_pred EEEEEEecCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHHhC---CEeecCCCHHHEEEcCCCCCcccccccc
Confidence 99999999999999999764 5689999999999999999999999 99999999999999844
Q ss_pred --------CCEEEeecccceeecCCCCcccccccccccccCccccCCC-CCCcchhHHHHHHHHHHHHhCCcCCCCCchh
Q 001384 945 --------GKALVTDFGLARVVSAGDSHVSTTIAGTVGYVAPEYGQTW-QATTKGDVYSFGVLAMELATGRRALEGGEEC 1015 (1088)
Q Consensus 945 --------~~~kl~Dfg~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DvwslG~~l~elltg~~p~~~~~~~ 1015 (1088)
..+||+|||.+....... ...||..|+|||.+.+. .++.++||||+|+++|+|++|..++.....
T Consensus 163 ~~~~~~~~~~~kl~Dfg~~~~~~~~~-----~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~- 236 (289)
T 1x8b_A 163 EDDWASNKVMFKIGDLGHVTRISSPQ-----VEEGDSRFLANEVLQENYTHLPKADIFALALTVVCAAGAEPLPRNGDQ- 236 (289)
T ss_dssp -------CCCEEECCCTTCEETTCSC-----CCCCCGGGCCHHHHTTCCTTHHHHHHHHHHHHHHHHTTCCCCCSSSHH-
T ss_pred cccccCCceEEEEcccccccccCCcc-----ccCCCccccChhHhcCCCCCCchhhHHHHHHHHHHHhcCCCCCcchhH-
Confidence 479999999998764322 23589999999988765 667899999999999999999987755322
Q ss_pred HHHHHHhhhccCCCCCCccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1016 LVEWGRRVMGYGRHGPGRAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1016 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
+..... ... ...+......+.+++.+|++.||++||++.|+++
T Consensus 237 ---~~~~~~--~~~---------------~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~ 279 (289)
T 1x8b_A 237 ---WHEIRQ--GRL---------------PRIPQVLSQEFTELLKVMIHPDPERRPSAMALVK 279 (289)
T ss_dssp ---HHHHHT--TCC---------------CCCSSCCCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred ---HHHHHc--CCC---------------CCCCcccCHHHHHHHHHHhCCCcccCCCHHHHhh
Confidence 111110 000 0011123357888999999999999999999975
No 214
>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=3.6e-37 Score=356.86 Aligned_cols=205 Identities=27% Similarity=0.395 Sum_probs=164.6
Q ss_pred HHcCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccC--ccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCC
Q 001384 802 KATGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREG--LEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGS 878 (1088)
Q Consensus 802 ~~~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~ 878 (1088)
...++|++.+.||+|+||.||+|.+. +|+.||||++.... ......+.+|+.++..+. .||||+++++++..++
T Consensus 6 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~---~h~niv~l~~~~~~~~ 82 (388)
T 3oz6_A 6 HVLRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELS---GHENIVNLLNVLRADN 82 (388)
T ss_dssp HHHTTEEEEEC-------CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTT---TCTTBCCEEEEEECTT
T ss_pred cccCceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHHhcc---CCCCCCeeeeEEecCC
Confidence 34578999999999999999999975 68999999986542 223456778999988732 4999999999997544
Q ss_pred --eEEEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccce
Q 001384 879 --EKILVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLAR 956 (1088)
Q Consensus 879 --~~~lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~ 956 (1088)
..|+||||++ |+|.++++. ..+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++
T Consensus 83 ~~~~~lv~e~~~-~~L~~~~~~-~~~~~~~~~~i~~qi~~~L~~LH~~---~ivHrDlkp~NIll~~~~~~kl~DFG~a~ 157 (388)
T 3oz6_A 83 DRDVYLVFDYME-TDLHAVIRA-NILEPVHKQYVVYQLIKVIKYLHSG---GLLHRDMKPSNILLNAECHVKVADFGLSR 157 (388)
T ss_dssp SSCEEEEEECCS-EEHHHHHHH-TCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCE
T ss_pred CCEEEEEecccC-cCHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHhC---CEEeCCCCHHHeEEcCCCCEEecCCcccc
Confidence 7899999997 599999976 4689999999999999999999999 99999999999999999999999999998
Q ss_pred eecCCC--------------------CcccccccccccccCccccCC-CCCCcchhHHHHHHHHHHHHhCCcCCCCCch
Q 001384 957 VVSAGD--------------------SHVSTTIAGTVGYVAPEYGQT-WQATTKGDVYSFGVLAMELATGRRALEGGEE 1014 (1088)
Q Consensus 957 ~~~~~~--------------------~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwslG~~l~elltg~~p~~~~~~ 1014 (1088)
.+.... ........||+.|+|||++.+ ..++.++||||+||++|||++|+.||.+...
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~ 236 (388)
T 3oz6_A 158 SFVNIRRVTNNIPLSINENTENFDDDQPILTDYVATRWYRAPEILLGSTKYTKGIDMWSLGCILGEILCGKPIFPGSST 236 (388)
T ss_dssp ESSSCCCCCCCGGGCCC---------------CCCGGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSH
T ss_pred cccccccccccccccccccccccccccccccCCcccCCcCCHHHhcCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCCH
Confidence 764311 112334679999999998775 6799999999999999999999999987644
No 215
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.8e-35 Score=351.20 Aligned_cols=326 Identities=25% Similarity=0.307 Sum_probs=239.6
Q ss_pred ceeEEeccccccccccccccccCCccCCeeeCCCCCCCCCcCccCCCCCCCcEEECccccccCcccCCCCCCCceeeccc
Q 001384 79 ARVNGLNLTDWNISGDIFNNFSALTQLSYLDLSRNTFSGSIPDDLSSCRSLKYLNLSHNILSGDLNLSGLRSLEILDLSV 158 (1088)
Q Consensus 79 ~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~ 158 (1088)
.+++.|+|+++.+++..+ ++.+++|++|+|++|.+++..| ++.+++|++|+|++|.+++...+.++++|++|+|++
T Consensus 68 ~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~ 143 (466)
T 1o6v_A 68 NNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSS 143 (466)
T ss_dssp TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEE
T ss_pred cCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChHHcCCCCCCEEECCC
Confidence 467889999999998654 9999999999999999997655 999999999999999999888899999999999999
Q ss_pred ccccccccCchhhhcccceEEeccCccCCCCCCccccCCCCCcEEEccCccccccccccCcccceecccCcccccccccc
Q 001384 159 NRIHGEISFSFPAICEKLVVANLSLNNLTGRIDTCFDGCLNLRYLDLSSNNFRGNIWNGLAQLVEFSVSENVLSGVVSSS 238 (1088)
Q Consensus 159 N~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 238 (1088)
|++++... ...+++|++|+++ |.+.+..+ +.++++|++|++++|++++..
T Consensus 144 n~l~~~~~---~~~l~~L~~L~l~-~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~------------------------ 193 (466)
T 1o6v_A 144 NTISDISA---LSGLTSLQQLSFG-NQVTDLKP--LANLTTLERLDISSNKVSDIS------------------------ 193 (466)
T ss_dssp EEECCCGG---GTTCTTCSEEEEE-ESCCCCGG--GTTCTTCCEEECCSSCCCCCG------------------------
T ss_pred CccCCChh---hccCCcccEeecC-CcccCchh--hccCCCCCEEECcCCcCCCCh------------------------
Confidence 99986432 3557899999996 66666544 899999999999999887521
Q ss_pred cccCCCccCEEEcCCCcccccCcccccCCCCCcEEEccCccccCCCccccCCCCCCCEEeCCCCcCCccCcccccCCCCC
Q 001384 239 VFKENCSLEIFDLSENEFIGDFPGEVSNCRNLVVLNLFGNNFSGPIPAEIGSISGLEALFLGKNNFLSVIPESLLNLSKL 318 (1088)
Q Consensus 239 ~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 318 (1088)
.+..+++|++|++++|.+++..| ++.+++|++|++++|++++. +.+..+++|+.|++++|.+.+..| +..+++|
T Consensus 194 ~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L 267 (466)
T 1o6v_A 194 VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKL 267 (466)
T ss_dssp GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTC
T ss_pred hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCC
Confidence 13334455555555555554333 44455555555555555532 245555555555555555555432 5555556
Q ss_pred cEEEcCCCcCCCchhHhhhcccccceeecCcCcccCCCCCccccCCCCcCEEEccCCccCCCCCccccCCcCcceeeccc
Q 001384 319 EVLDLSSNNFGGEVQKIFGRFTQVKILALHSNSYIDGMNSSGILKLPNISRLDLSHNNFTGPLPVEISQMRSLKFLILAH 398 (1088)
Q Consensus 319 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~ 398 (1088)
++|++++|.+++..+ +..+++|+.|++++|.+.... .+..+++|+.|+|++|++++..| +..+++|+.|++++
T Consensus 268 ~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~---~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~ 340 (466)
T 1o6v_A 268 TELKLGANQISNISP--LAGLTALTNLELNENQLEDIS---PISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYN 340 (466)
T ss_dssp SEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCG---GGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCS
T ss_pred CEEECCCCccCcccc--ccCCCccCeEEcCCCcccCch---hhcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCC
Confidence 666666665555444 555556666666655543321 25577889999999999987655 77889999999999
Q ss_pred cccCCcCCcccCCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEccccccccCCCcc
Q 001384 399 NRFNGSIPAVYGNMPNLQTLDLSFNELTGPIPPSIGNLTSLLWLMLANNSLSGEIPGE 456 (1088)
Q Consensus 399 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 456 (1088)
|++++. ..+..+++|+.|++++|++++..| +..+++|++|++++|.+++ +|..
T Consensus 341 n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~-~p~~ 393 (466)
T 1o6v_A 341 NKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN-APVN 393 (466)
T ss_dssp SCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC-CCBC
T ss_pred CccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC-Cchh
Confidence 999854 468889999999999999997666 8889999999999999985 4443
No 216
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}
Probab=100.00 E-value=2.3e-36 Score=362.09 Aligned_cols=251 Identities=25% Similarity=0.327 Sum_probs=203.6
Q ss_pred HcCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCc-------------cchHHHHHHHHHHhCCCCCCCCCcee
Q 001384 803 ATGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGL-------------EGEREFRAEMEVLSGNGFGWPHPNLV 868 (1088)
Q Consensus 803 ~~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~-------------~~~~~~~~E~~~l~~~~~~l~h~niv 868 (1088)
..++|++.+.||+|+||+||+|+++ +++.||||++..... ...+.+.+|++++++ ++||||+
T Consensus 34 i~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~----l~hpniv 109 (504)
T 3q5i_A 34 IGESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKS----LDHPNII 109 (504)
T ss_dssp GGGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHT----CCCTTBC
T ss_pred cccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHh----CCCCCCC
Confidence 4578999999999999999999976 578999999976432 224678899999997 6799999
Q ss_pred EEeeEEecCCeEEEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCC---
Q 001384 869 TLYGWCLDGSEKILVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEG--- 945 (1088)
Q Consensus 869 ~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~--- 945 (1088)
++++++.++...++||||+++|+|.+++.....+++.+++.++.||+.||+|||++ +|+||||||+||+++.++
T Consensus 110 ~~~~~~~~~~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~ 186 (504)
T 3q5i_A 110 KLFDVFEDKKYFYLVTEFYEGGELFEQIINRHKFDECDAANIMKQILSGICYLHKH---NIVHRDIKPENILLENKNSLL 186 (504)
T ss_dssp CEEEEEECSSEEEEEEECCTTCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESSTTCCS
T ss_pred eEEEEEEcCCEEEEEEecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCCcHHHEEEecCCCCc
Confidence 99999999999999999999999999998888899999999999999999999999 999999999999999776
Q ss_pred CEEEeecccceeecCCCCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhc
Q 001384 946 KALVTDFGLARVVSAGDSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMG 1025 (1088)
Q Consensus 946 ~~kl~Dfg~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~ 1025 (1088)
.+||+|||+++.+... .......||+.|+|||++.+ .++.++||||+||++|+|++|..||.+..... ....+..
T Consensus 187 ~~kl~Dfg~a~~~~~~--~~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~--~~~~i~~ 261 (504)
T 3q5i_A 187 NIKIVDFGLSSFFSKD--YKLRDRLGTAYYIAPEVLKK-KYNEKCDVWSCGVIMYILLCGYPPFGGQNDQD--IIKKVEK 261 (504)
T ss_dssp SEEECCCTTCEECCTT--SCBCCCCSCTTTCCHHHHTT-CBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH--HHHHHHH
T ss_pred cEEEEECCCCEEcCCC--CccccccCCcCCCCHHHhcc-CCCchHHHHHHHHHHHHHHhCCCCCCCCCHHH--HHHHHHc
Confidence 6999999999876543 23345679999999998875 68999999999999999999999998765421 1111110
Q ss_pred cCCCCCCccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1026 YGRHGPGRAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1026 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
.... .+.. .......++.+++.+|++.||.+||+++|+++
T Consensus 262 ~~~~------~~~~-------~~~~~s~~~~~li~~~L~~dp~~R~t~~e~l~ 301 (504)
T 3q5i_A 262 GKYY------FDFN-------DWKNISDEAKELIKLMLTYDYNKRCTAEEALN 301 (504)
T ss_dssp CCCC------CCHH-------HHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred CCCC------CCcc-------ccCCCCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence 0000 0000 00122357889999999999999999999975
No 217
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=100.00 E-value=7.2e-37 Score=357.09 Aligned_cols=251 Identities=25% Similarity=0.345 Sum_probs=193.8
Q ss_pred HHcCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCcc--------chHHHHHHHHHHhCCCCCCCCCceeEEee
Q 001384 802 KATGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGLE--------GEREFRAEMEVLSGNGFGWPHPNLVTLYG 872 (1088)
Q Consensus 802 ~~~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~--------~~~~~~~E~~~l~~~~~~l~h~niv~l~~ 872 (1088)
...++|.+.+.||+|+||+||+|.++ +++.||||++...... ....+.+|++++++ ++||||+++++
T Consensus 132 ~~~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~----l~hpniv~l~~ 207 (419)
T 3i6u_A 132 ALRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKK----LNHPCIIKIKN 207 (419)
T ss_dssp HHHTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHH----CCCTTBCCCCE
T ss_pred hhhccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHh----CCCCCEeeEEE
Confidence 34678999999999999999999976 6899999998754211 11247889999997 67999999999
Q ss_pred EEecCCeEEEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCC---CEEE
Q 001384 873 WCLDGSEKILVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEG---KALV 949 (1088)
Q Consensus 873 ~~~~~~~~~lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~---~~kl 949 (1088)
++.. ...++||||+++|+|.+++....++++.+++.++.|++.||+|||++ +|+||||||+||+++.++ .+||
T Consensus 208 ~~~~-~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~ivHrDlkp~NIll~~~~~~~~~kl 283 (419)
T 3i6u_A 208 FFDA-EDYYIVLELMEGGELFDKVVGNKRLKEATCKLYFYQMLLAVQYLHEN---GIIHRDLKPENVLLSSQEEDCLIKI 283 (419)
T ss_dssp EEES-SEEEEEEECCTTCBGGGGTSSSCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESSSSSSCCEEE
T ss_pred EEec-CceEEEEEcCCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChHhEEEecCCCcceEEE
Confidence 9754 55799999999999999998888899999999999999999999999 999999999999997554 5999
Q ss_pred eecccceeecCCCCcccccccccccccCccccC---CCCCCcchhHHHHHHHHHHHHhCCcCCCCCchh--HHHHHHhhh
Q 001384 950 TDFGLARVVSAGDSHVSTTIAGTVGYVAPEYGQ---TWQATTKGDVYSFGVLAMELATGRRALEGGEEC--LVEWGRRVM 1024 (1088)
Q Consensus 950 ~Dfg~a~~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~--~~~~~~~~~ 1024 (1088)
+|||+++.... ........||+.|+|||++. ...++.++||||+||++|+|++|+.||...... ........
T Consensus 284 ~DFG~a~~~~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~~lltg~~pf~~~~~~~~~~~~i~~~- 360 (419)
T 3i6u_A 284 TDFGHSKILGE--TSLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSLKDQITSG- 360 (419)
T ss_dssp CCSSTTTSCC-------------CTTCCTTTTC----CTTHHHHHHHHHHHHHHHHHHSSCSSCCCSSSCCHHHHHHTT-
T ss_pred eecccceecCC--CccccccCCCCCccCceeeecCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCcchHHHHHHHhcC-
Confidence 99999987643 22334567999999999875 367889999999999999999999999764321 11111100
Q ss_pred ccCCCCCCccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1025 GYGRHGPGRAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1025 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
. ....+.. .......+.+++.+|++.||++||+++|+++
T Consensus 361 ---~----~~~~~~~--------~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~ 399 (419)
T 3i6u_A 361 ---K----YNFIPEV--------WAEVSEKALDLVKKLLVVDPKARFTTEEALR 399 (419)
T ss_dssp ---C----CCCCHHH--------HTTSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred ---C----CCCCchh--------hcccCHHHHHHHHHHccCChhHCcCHHHHhC
Confidence 0 0000000 1123457889999999999999999999986
No 218
>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A
Probab=100.00 E-value=1.7e-37 Score=357.97 Aligned_cols=242 Identities=14% Similarity=0.134 Sum_probs=190.6
Q ss_pred cCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccC---ccchHHHHHHHHHHhCCCCCCCCCceeEEe-------e
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREG---LEGEREFRAEMEVLSGNGFGWPHPNLVTLY-------G 872 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~~~~~l~h~niv~l~-------~ 872 (1088)
.++|++.+.||+|+||+||+|++. +|+.||||++.... ....+.+.+|++++..+. .++|||||+++ +
T Consensus 72 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~-~l~hpniv~~~~~~~~~~~ 150 (377)
T 3byv_A 72 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLR-GIKNQKQAKVHLRFIFPFD 150 (377)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGST-TCCSHHHHHHHHCBCCCSE
T ss_pred CceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhcc-ccCCHHHHHHHhhhhhhhh
Confidence 457888999999999999999974 68999999997532 234467889997666543 46899999998 6
Q ss_pred EEecCC-----------------eEEEEEEecCCCCHHHHHhhcCCCCH-------HHHHHHHHHHHHHHHHHHhcCCCC
Q 001384 873 WCLDGS-----------------EKILVYEYMEGGSLEDIISDRTRLTW-------RRRLDIAIDVARALVFLHHECYPP 928 (1088)
Q Consensus 873 ~~~~~~-----------------~~~lv~e~~~~gsL~~~l~~~~~l~~-------~~~~~i~~qi~~~L~yLH~~~~~~ 928 (1088)
++.+++ ..|+||||+ +|+|.++++....+++ ..++.|+.||+.||+|||++ +
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ 226 (377)
T 3byv_A 151 LVKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHY---G 226 (377)
T ss_dssp EEECTTSCSEEEC------CEEESEEEEEECC-SEEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHHT---T
T ss_pred hhhccCCccccccccCCCceEEEEEEEEEecc-CCCHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHhC---C
Confidence 655543 278999999 5799999987554554 88889999999999999999 9
Q ss_pred eEecCCCCCCEEEcCCCCEEEeecccceeecCCCCcccccccccccccCccccCCC-----------CCCcchhHHHHHH
Q 001384 929 IVHRDVKASNVLLDKEGKALVTDFGLARVVSAGDSHVSTTIAGTVGYVAPEYGQTW-----------QATTKGDVYSFGV 997 (1088)
Q Consensus 929 ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-----------~~~~~~DvwslG~ 997 (1088)
|+||||||+||+++.++.+||+|||+++.... ......| +.|+|||++.+. .++.++|||||||
T Consensus 227 ivHrDikp~NIll~~~~~~kL~DFG~a~~~~~----~~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DvwSlG~ 301 (377)
T 3byv_A 227 LVHTYLRPVDIVLDQRGGVFLTGFEHLVRDGA----RVVSSVS-RGFEPPELEARRATISYHRDRRTLMTFSFDAWALGL 301 (377)
T ss_dssp EECSCCCGGGEEECTTCCEEECCGGGCEETTC----EEECCCC-TTCCCHHHHHHHTSTHHHHCCEEECCHHHHHHHHHH
T ss_pred eecCCCCHHHEEEcCCCCEEEEechhheecCC----cccCCCC-cCccChhhhcccccccccccccccCChhhhHHHHHH
Confidence 99999999999999999999999999986321 2344567 999999998877 8999999999999
Q ss_pred HHHHHHhCCcCCCCCchhHHHHHHhhhccCCCCCCccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHH
Q 001384 998 LAMELATGRRALEGGEECLVEWGRRVMGYGRHGPGRAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVL 1077 (1088)
Q Consensus 998 ~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil 1077 (1088)
++|||++|+.||.+.... ......... ....+.++.+++.+||+.||++||++.|++
T Consensus 302 il~elltg~~Pf~~~~~~------------------~~~~~~~~~-----~~~~~~~~~~li~~~L~~dp~~Rpt~~e~l 358 (377)
T 3byv_A 302 VIYWIWCADLPITKDAAL------------------GGSEWIFRS-----CKNIPQPVRALLEGFLRYPKEDRLLPLQAM 358 (377)
T ss_dssp HHHHHHHSSCCC------------------------CCSGGGGSS-----CCCCCHHHHHHHHHHTCSSGGGCCCHHHHH
T ss_pred HHHHHHHCCCCCcccccc------------------cchhhhhhh-----ccCCCHHHHHHHHHHcCCCchhCCCHHHHh
Confidence 999999999999764320 000000000 012235688899999999999999999998
Q ss_pred H
Q 001384 1078 A 1078 (1088)
Q Consensus 1078 ~ 1078 (1088)
+
T Consensus 359 ~ 359 (377)
T 3byv_A 359 E 359 (377)
T ss_dssp T
T ss_pred h
Confidence 5
No 219
>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*
Probab=100.00 E-value=4e-37 Score=347.89 Aligned_cols=257 Identities=28% Similarity=0.385 Sum_probs=204.0
Q ss_pred cCCCCccceecccCceEEEEEEe------CCCcEEEEEEccccC-ccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEec
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVL------PDGREVAVKKLQREG-LEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLD 876 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~------~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~ 876 (1088)
.++|++.+.||+|+||.||+|++ .+++.||||++.... .....++.+|+.++++ ++||||+++++++.+
T Consensus 29 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~----l~h~~iv~~~~~~~~ 104 (327)
T 2yfx_A 29 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISK----FNHQNIVRCIGVSLQ 104 (327)
T ss_dssp GGGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHHHH----CCCTTBCCEEEEECS
T ss_pred hhheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHHhh----CCCCCCCeEEEEEcC
Confidence 35799999999999999999984 246789999997543 2334578899999987 679999999999999
Q ss_pred CCeEEEEEEecCCCCHHHHHhhcC-------CCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcC---CCC
Q 001384 877 GSEKILVYEYMEGGSLEDIISDRT-------RLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDK---EGK 946 (1088)
Q Consensus 877 ~~~~~lv~e~~~~gsL~~~l~~~~-------~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~---~~~ 946 (1088)
....++||||+++|+|.+++.... .+++.+++.++.|++.||+|||++ +|+||||||+||+++. +..
T Consensus 105 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~---~i~H~dlkp~NIli~~~~~~~~ 181 (327)
T 2yfx_A 105 SLPRFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN---HFIHRDIAARNCLLTCPGPGRV 181 (327)
T ss_dssp SSSCEEEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESCSSTTCC
T ss_pred CCCcEEEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHhhC---CeecCcCCHhHEEEecCCCcce
Confidence 999999999999999999998653 489999999999999999999999 9999999999999994 446
Q ss_pred EEEeecccceeecCCCC-cccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHh-CCcCCCCCchhHHHHHHhhh
Q 001384 947 ALVTDFGLARVVSAGDS-HVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELAT-GRRALEGGEECLVEWGRRVM 1024 (1088)
Q Consensus 947 ~kl~Dfg~a~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~ellt-g~~p~~~~~~~~~~~~~~~~ 1024 (1088)
+||+|||+++....... .......+++.|+|||.+.+..++.++||||||+++|+|++ |+.||...... +......
T Consensus 182 ~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~--~~~~~~~ 259 (327)
T 2yfx_A 182 AKIGDFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQ--EVLEFVT 259 (327)
T ss_dssp EEECCCHHHHHHHC------CCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHH--HHHHHHH
T ss_pred EEECccccccccccccccccCCCcCCCcceeCHhHhcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCcCHH--HHHHHHh
Confidence 99999999976543222 12234567889999999888899999999999999999998 99999875432 1111111
Q ss_pred ccCCCCCCccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhhCC
Q 001384 1025 GYGRHGPGRAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKILP 1085 (1088)
Q Consensus 1025 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i~~ 1085 (1088)
.... ...+...+..+.+++.+|++.||.+||++.|+++.++.+..
T Consensus 260 ~~~~----------------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~~~~ 304 (327)
T 2yfx_A 260 SGGR----------------MDPPKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQ 304 (327)
T ss_dssp TTCC----------------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred cCCC----------------CCCCCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHhc
Confidence 1000 00112234578889999999999999999999999998754
No 220
>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*
Probab=100.00 E-value=2.1e-37 Score=341.76 Aligned_cols=252 Identities=26% Similarity=0.366 Sum_probs=202.1
Q ss_pred cCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCc--cchHHHHHHHHHHhCCCCCCCCCceeEEeeEEec--CC
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGL--EGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLD--GS 878 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~--~~ 878 (1088)
.++|++.+.||+|+||.||+|++. +++.||+|++..... ...+.+.+|++++++ ++||||+++++++.+ ..
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~----l~h~~i~~~~~~~~~~~~~ 80 (279)
T 2w5a_A 5 AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRE----LKHPNIVRYYDRIIDRTNT 80 (279)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHH----CCCTTBCCEEEEEEEGGGT
T ss_pred hhheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHh----cCCCCCCeEEEEEecCCCc
Confidence 357899999999999999999976 689999999976532 234578899999987 679999999998753 57
Q ss_pred eEEEEEEecCCCCHHHHHhhcC----CCCHHHHHHHHHHHHHHHHHHHhcCCCC-----eEecCCCCCCEEEcCCCCEEE
Q 001384 879 EKILVYEYMEGGSLEDIISDRT----RLTWRRRLDIAIDVARALVFLHHECYPP-----IVHRDVKASNVLLDKEGKALV 949 (1088)
Q Consensus 879 ~~~lv~e~~~~gsL~~~l~~~~----~l~~~~~~~i~~qi~~~L~yLH~~~~~~-----ivH~DLkp~NIll~~~~~~kl 949 (1088)
..++||||+++++|.+++.... .+++.+++.++.|++.||+|||+. + |+||||||+||+++.++.+||
T Consensus 81 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~~~~~~ivH~dl~p~NIl~~~~~~~kl 157 (279)
T 2w5a_A 81 TLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRR---SDGGHTVLHRDLKPANVFLDGKQNVKL 157 (279)
T ss_dssp EEEEEEECCTTEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHH---C------CCCCCSGGGEEECSSSCEEE
T ss_pred eEEEEEeCCCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHhcc---cCCCCeeEEeccchhhEEEcCCCCEEE
Confidence 8899999999999999997532 499999999999999999999999 7 999999999999999999999
Q ss_pred eecccceeecCCCCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCC
Q 001384 950 TDFGLARVVSAGDSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRH 1029 (1088)
Q Consensus 950 ~Dfg~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~ 1029 (1088)
+|||.++...... .......|+..|+|||.+.+..++.++||||||+++|+|++|+.||........ .........
T Consensus 158 ~dfg~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~--~~~i~~~~~- 233 (279)
T 2w5a_A 158 GDFGLARILNHDT-SFAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQKEL--AGKIREGKF- 233 (279)
T ss_dssp CCCCHHHHC---C-HHHHHHHSCCTTCCHHHHHCC-CCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHH--HHHHHHTCC-
T ss_pred ecCchheeecccc-ccccccCCCccccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCcccCHHHH--HHHHhhccc-
Confidence 9999997654322 122345689999999999888999999999999999999999999987644211 111110000
Q ss_pred CCCccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHH
Q 001384 1030 GPGRAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLI 1081 (1088)
Q Consensus 1030 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~ 1081 (1088)
...+.....++.+++.+|++.||++||+++|+++.+.
T Consensus 234 ---------------~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~~~ 270 (279)
T 2w5a_A 234 ---------------RRIPYRYSDELNEIITRMLNLKDYHRPSVEEILENPL 270 (279)
T ss_dssp ---------------CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTSTT
T ss_pred ---------------ccCCcccCHHHHHHHHHHcCCCcccCCCHHHHHhChh
Confidence 0011223457888999999999999999999987643
No 221
>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}
Probab=100.00 E-value=3.5e-36 Score=338.17 Aligned_cols=250 Identities=26% Similarity=0.416 Sum_probs=202.3
Q ss_pred HcCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeEE
Q 001384 803 ATGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGLEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEKI 881 (1088)
Q Consensus 803 ~~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~~ 881 (1088)
..++|++.+.||+|+||.||+|.+. +|+.||||++... .....+.+|++++.. ++||||+++++++..+...+
T Consensus 27 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~--~~~~~~~~e~~~l~~----l~h~~i~~~~~~~~~~~~~~ 100 (314)
T 3com_A 27 PEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVE--SDLQEIIKEISIMQQ----CDSPHVVKYYGSYFKNTDLW 100 (314)
T ss_dssp ---CEEEEEECC----CEEEEEEETTTCCEEEEEEEETT--SCCHHHHHHHHHHHT----CCCTTBCCEEEEEEETTEEE
T ss_pred chhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCch--HHHHHHHHHHHHHHh----CCCCCCccEEEEEEeCCEEE
Confidence 4568999999999999999999976 5899999999765 234678899999987 67999999999999999999
Q ss_pred EEEEecCCCCHHHHHh-hcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccceeecC
Q 001384 882 LVYEYMEGGSLEDIIS-DRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARVVSA 960 (1088)
Q Consensus 882 lv~e~~~~gsL~~~l~-~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~~~ 960 (1088)
+||||+++++|.+++. ....+++.+++.++.|++.||+|||+. +++||||||+||+++.++.+||+|||.+.....
T Consensus 101 lv~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~ 177 (314)
T 3com_A 101 IVMEYCGAGSVSDIIRLRNKTLTEDEIATILQSTLKGLEYLHFM---RKIHRDIKAGNILLNTEGHAKLADFGVAGQLTD 177 (314)
T ss_dssp EEEECCTTEEHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECBT
T ss_pred EEeecCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC---CCcCCCcCHHHEEECCCCCEEEeecccchhhhh
Confidence 9999999999999997 456799999999999999999999999 999999999999999999999999999987653
Q ss_pred CCCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCCCCCccccchhh
Q 001384 961 GDSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRHGPGRAVIPVVL 1040 (1088)
Q Consensus 961 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1040 (1088)
.. .......|+..|+|||.+.+..++.++||||+|+++|+|++|+.||.........+..... .. . .
T Consensus 178 ~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~--~~--~-~------- 244 (314)
T 3com_A 178 TM-AKRNTVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPPYADIHPMRAIFMIPTN--PP--P-T------- 244 (314)
T ss_dssp TB-SCBCCCCSCGGGCCHHHHSSSCBCTTHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHS--CC--C-C-------
T ss_pred hc-cccCccCCCCCccChhhcCCCCCCccccHHHHHHHHHHHHhCCCCCCCCChHHHHHHHhcC--CC--c-c-------
Confidence 22 2233457899999999999889999999999999999999999999876542222211111 00 0 0
Q ss_pred cCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1041 LGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1041 ~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
...+......+.+++.+|++.||.+||++.|+++
T Consensus 245 ----~~~~~~~~~~l~~li~~~l~~dp~~Rpt~~~ll~ 278 (314)
T 3com_A 245 ----FRKPELWSDNFTDFVKQCLVKSPEQRATATQLLQ 278 (314)
T ss_dssp ----CSSGGGSCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred ----cCCcccCCHHHHHHHHHHccCChhhCcCHHHHHh
Confidence 0012223457889999999999999999999975
No 222
>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*
Probab=100.00 E-value=1.5e-36 Score=339.42 Aligned_cols=248 Identities=29% Similarity=0.427 Sum_probs=206.1
Q ss_pred cCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCc-cchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeEE
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGL-EGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEKI 881 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~~ 881 (1088)
.+.|++.+.||+|+||.||+|++. +++.||||++..... ...+.+.+|+.++.. ++||||+++++++.++...+
T Consensus 21 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~----l~h~~i~~~~~~~~~~~~~~ 96 (303)
T 3a7i_A 21 EELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQ----CDSPYVTKYYGSYLKDTKLW 96 (303)
T ss_dssp GGTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCSTTHHHHHHHHHHHHH----CCCTTBCCEEEEEEETTEEE
T ss_pred HHHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccccHHHHHHHHHHHHHHHh----CCCCCEeEEEEEEecCCeEE
Confidence 356889999999999999999975 689999999976532 334678999999987 67999999999999999999
Q ss_pred EEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccceeecCC
Q 001384 882 LVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARVVSAG 961 (1088)
Q Consensus 882 lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~~~~ 961 (1088)
+||||+++++|.++++. .++++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||.+......
T Consensus 97 lv~e~~~~~~L~~~~~~-~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~ 172 (303)
T 3a7i_A 97 IIMEYLGGGSALDLLEP-GPLDETQIATILREILKGLDYLHSE---KKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDT 172 (303)
T ss_dssp EEEECCTTEEHHHHHTT-SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECBTT
T ss_pred EEEEeCCCCcHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCChheEEECCCCCEEEeecccceecCcc
Confidence 99999999999999965 5699999999999999999999999 9999999999999999999999999999876543
Q ss_pred CCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCCCCCccccchhhc
Q 001384 962 DSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRHGPGRAVIPVVLL 1041 (1088)
Q Consensus 962 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1041 (1088)
. .......|+..|+|||++.+..++.++||||||+++|+|++|+.||............... ..
T Consensus 173 ~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~--~~------------- 236 (303)
T 3a7i_A 173 Q-IKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPPHSELHPMKVLFLIPKN--NP------------- 236 (303)
T ss_dssp B-CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHS--CC-------------
T ss_pred c-cccCccCCCcCccCHHHHhcCCCCchhhhHHHHHHHHHHccCCCCCCCcCHHHHHHHhhcC--CC-------------
Confidence 2 2234467899999999999889999999999999999999999999875442221111100 00
Q ss_pred CCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1042 GSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1042 ~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
...+......+.+++.+|++.||++||++.|+++
T Consensus 237 ---~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~ 270 (303)
T 3a7i_A 237 ---PTLEGNYSKPLKEFVEACLNKEPSFRPTAKELLK 270 (303)
T ss_dssp ---CCCCSSCCHHHHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred ---CCCccccCHHHHHHHHHHcCCChhhCcCHHHHhh
Confidence 0001122356888999999999999999999986
No 223
>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}
Probab=100.00 E-value=2.2e-36 Score=358.17 Aligned_cols=193 Identities=26% Similarity=0.346 Sum_probs=155.6
Q ss_pred cCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccC--ccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEec----
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREG--LEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLD---- 876 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~---- 876 (1088)
.++|++.+.||+|+||+||+|+++ +++.||||++.... ....+.+.+|+++++. ++||||+++++++..
T Consensus 52 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~----l~h~niv~l~~~~~~~~~~ 127 (458)
T 3rp9_A 52 PDRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNR----LNHDHVVKVLDIVIPKDVE 127 (458)
T ss_dssp CTTEEECCC-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHH----CCCTTBCCEEEECCCSCTT
T ss_pred CCCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHh----CCCCCCCceEEEEecCCcc
Confidence 468999999999999999999976 68999999997642 2234678899999997 679999999999854
Q ss_pred -CCeEEEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccc
Q 001384 877 -GSEKILVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLA 955 (1088)
Q Consensus 877 -~~~~~lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a 955 (1088)
....|+||||++ |+|.++++....+++..++.++.||+.||+|||+. +||||||||+|||++.++.+||+|||++
T Consensus 128 ~~~~~~lv~e~~~-~~L~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~---~iiHrDlKp~NILl~~~~~~kl~DFGla 203 (458)
T 3rp9_A 128 KFDELYVVLEIAD-SDFKKLFRTPVYLTELHIKTLLYNLLVGVKYVHSA---GILHRDLKPANCLVNQDCSVKVCDFGLA 203 (458)
T ss_dssp TCCCEEEEECCCS-EEHHHHHHSSCCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTCCEEECCCTTC
T ss_pred cCceEEEEEeccc-cchhhhcccCCCCCHHHHHHHHHHHHHHHHHHHhC---CcCCCCCChhhEEECCCCCEeecccccc
Confidence 357899999985 69999999888899999999999999999999999 9999999999999999999999999999
Q ss_pred eeecCCCC--------------------------cccccccccccccCcccc-CCCCCCcchhHHHHHHHHHHHHh
Q 001384 956 RVVSAGDS--------------------------HVSTTIAGTVGYVAPEYG-QTWQATTKGDVYSFGVLAMELAT 1004 (1088)
Q Consensus 956 ~~~~~~~~--------------------------~~~~~~~gt~~y~aPE~~-~~~~~~~~~DvwslG~~l~ellt 1004 (1088)
+....... ......+||+.|+|||++ ....++.++||||+||++|||++
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~DiwSlG~il~ellt 279 (458)
T 3rp9_A 204 RTVDYPENGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAPELILLQENYTEAIDVWSIGCIFAELLN 279 (458)
T ss_dssp BCTTSCTTCCCCCC---------------------------CCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHT
T ss_pred hhccCccccccccccCccccccccccccccccccccccCCcccccccChHHhhCCCCCCcHhHHHHHHHHHHHHHH
Confidence 87643211 122345789999999975 56679999999999999999999
No 224
>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*
Probab=100.00 E-value=4.6e-36 Score=334.50 Aligned_cols=253 Identities=25% Similarity=0.330 Sum_probs=205.5
Q ss_pred HcCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCc---------cchHHHHHHHHHHhCCCCCCCCCceeEEee
Q 001384 803 ATGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGL---------EGEREFRAEMEVLSGNGFGWPHPNLVTLYG 872 (1088)
Q Consensus 803 ~~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~---------~~~~~~~~E~~~l~~~~~~l~h~niv~l~~ 872 (1088)
..++|++.+.||+|+||.||+|+++ +++.||||++..... ...+.+.+|++++.++. .||||+++++
T Consensus 15 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~---~h~~i~~~~~ 91 (298)
T 1phk_A 15 FYENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVS---GHPNIIQLKD 91 (298)
T ss_dssp CTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHT---TCTTBCCEEE
T ss_pred hhhccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhc---CCCCEeeeee
Confidence 3468999999999999999999986 689999999975431 12346778999988632 5999999999
Q ss_pred EEecCCeEEEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeec
Q 001384 873 WCLDGSEKILVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDF 952 (1088)
Q Consensus 873 ~~~~~~~~~lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Df 952 (1088)
++..+...++||||+++++|.+++.....+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||+||
T Consensus 92 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~df 168 (298)
T 1phk_A 92 TYETNTFFFLVFDLMKKGELFDYLTEKVTLSEKETRKIMRALLEVICALHKL---NIVHRDLKPENILLDDDMNIKLTDF 168 (298)
T ss_dssp EEECSSEEEEEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCC
T ss_pred eeccCCeEEEEEeccCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCcceEEEcCCCcEEEecc
Confidence 9999999999999999999999999888899999999999999999999999 9999999999999999999999999
Q ss_pred ccceeecCCCCcccccccccccccCccccC------CCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhcc
Q 001384 953 GLARVVSAGDSHVSTTIAGTVGYVAPEYGQ------TWQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGY 1026 (1088)
Q Consensus 953 g~a~~~~~~~~~~~~~~~gt~~y~aPE~~~------~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~ 1026 (1088)
|.+....... ......+++.|+|||++. ...++.++||||+|+++|+|++|+.||........ .......
T Consensus 169 g~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~--~~~~~~~ 244 (298)
T 1phk_A 169 GFSCQLDPGE--KLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQMLM--LRMIMSG 244 (298)
T ss_dssp TTCEECCTTC--CBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHH--HHHHHHT
T ss_pred cchhhcCCCc--ccccccCCccccCHHHhccccccccccCCcccccHhHHHHHHHHHHCCCCCcCccHHHH--HHHHhcC
Confidence 9998765332 234456899999999864 45788999999999999999999999987544221 1111110
Q ss_pred CCCCCCccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1027 GRHGPGRAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1027 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
..... .+.....+..+.+++.+|++.||++||+++|+++
T Consensus 245 ~~~~~-------------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~ 283 (298)
T 1phk_A 245 NYQFG-------------SPEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALA 283 (298)
T ss_dssp CCCCC-------------TTTGGGSCHHHHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred CcccC-------------cccccccCHHHHHHHHHHccCCcccCCCHHHHHh
Confidence 00000 0011233467889999999999999999999975
No 225
>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*
Probab=100.00 E-value=4.8e-37 Score=347.79 Aligned_cols=263 Identities=23% Similarity=0.322 Sum_probs=200.6
Q ss_pred CCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCcc--chHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeEE
Q 001384 805 GKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGLE--GEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEKI 881 (1088)
Q Consensus 805 ~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~--~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~~ 881 (1088)
++|++.+.||+|+||.||+|++. +|+.||||++...... ..+.+.+|++++++ ++||||+++++++.+.+..+
T Consensus 25 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~----l~h~~iv~~~~~~~~~~~~~ 100 (331)
T 4aaa_A 25 EKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQ----LRHENLVNLLEVCKKKKRWY 100 (331)
T ss_dssp GGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHH----CCCTTBCCEEEEEEETTEEE
T ss_pred hhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhh----CCCCCEeeEEEEeecCCEEE
Confidence 57999999999999999999976 5899999998765332 23457789999987 67999999999999999999
Q ss_pred EEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccceeecCC
Q 001384 882 LVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARVVSAG 961 (1088)
Q Consensus 882 lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~~~~ 961 (1088)
+||||+++++|.++......+++..++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||.++.....
T Consensus 101 lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~ 177 (331)
T 4aaa_A 101 LVFEFVDHTILDDLELFPNGLDYQVVQKYLFQIINGIGFCHSH---NIIHRDIKPENILVSQSGVVKLCDFGFARTLAAP 177 (331)
T ss_dssp EEEECCSEEHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCTTC------
T ss_pred EEEecCCcchHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHC---CEEccCcChheEEEcCCCcEEEEeCCCceeecCC
Confidence 9999999999999988888899999999999999999999999 9999999999999999999999999999865432
Q ss_pred CCcccccccccccccCccccCCC-CCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHh-hhcc-------------
Q 001384 962 DSHVSTTIAGTVGYVAPEYGQTW-QATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRR-VMGY------------- 1026 (1088)
Q Consensus 962 ~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~-~~~~------------- 1026 (1088)
. .......+|..|+|||++.+. .++.++||||+|+++|+|++|+.||.+..+........ ....
T Consensus 178 ~-~~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (331)
T 4aaa_A 178 G-EVYDDEVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGEPLFPGDSDIDQLYHIMMCLGNLIPRHQELFNKNP 256 (331)
T ss_dssp -------CCCCCTTCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHHHHHCG
T ss_pred c-cccCCCcCCccccCcccccCCCCcchHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHhCCCChhhhhHhhhcc
Confidence 2 223345689999999988765 78999999999999999999999998765421111100 0000
Q ss_pred -CCCCCCccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1027 -GRHGPGRAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1027 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
........... ..............+.+++.+|++.||++||+++|+++
T Consensus 257 ~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~ 306 (331)
T 4aaa_A 257 VFAGVRLPEIKE---REPLERRYPKLSEVVIDLAKKCLHIDPDKRPFCAELLH 306 (331)
T ss_dssp GGTTCCCCCCSS---CCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCGGGGGG
T ss_pred ccccccCccccc---cchhhhcccchhHHHHHHHHHHhccCcccCCCHHHHhc
Confidence 00000000000 00000001123467889999999999999999999875
No 226
>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*
Probab=100.00 E-value=2.7e-36 Score=344.74 Aligned_cols=266 Identities=23% Similarity=0.300 Sum_probs=200.1
Q ss_pred CCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCcc--chHHHHHHHHHHhCCCCCCCCCceeEEeeEEec-----
Q 001384 805 GKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGLE--GEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLD----- 876 (1088)
Q Consensus 805 ~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~--~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~----- 876 (1088)
++|++.+.||+|+||+||+|+++ +|+.||||++...... ....+.+|+++++. ++||||+++++++..
T Consensus 17 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~----l~h~~iv~~~~~~~~~~~~~ 92 (351)
T 3mi9_A 17 SKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQL----LKHENVVNLIEICRTKASPY 92 (351)
T ss_dssp GGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHH----CCCTTBCCEEEEEEEC----
T ss_pred cceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHHh----ccCCCcccHhheeecccccc
Confidence 57999999999999999999975 7899999999765322 34577899999987 679999999999887
Q ss_pred ---CCeEEEEEEecCCCCHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeec
Q 001384 877 ---GSEKILVYEYMEGGSLEDIISDR-TRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDF 952 (1088)
Q Consensus 877 ---~~~~~lv~e~~~~gsL~~~l~~~-~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Df 952 (1088)
.+..++||||+++ +|.+.+... .++++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+||+||
T Consensus 93 ~~~~~~~~lv~e~~~~-~l~~~l~~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIl~~~~~~~kl~Df 168 (351)
T 3mi9_A 93 NRCKGSIYLVFDFCEH-DLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIHRN---KILHRDMKAANVLITRDGVLKLADF 168 (351)
T ss_dssp ----CEEEEEEECCSE-EHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCC
T ss_pred ccCCceEEEEEeccCC-CHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCHHHEEEcCCCCEEEccc
Confidence 3468999999986 777776553 5799999999999999999999999 9999999999999999999999999
Q ss_pred ccceeecCCCC---cccccccccccccCccccCC-CCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHH-HHHHhhhccC
Q 001384 953 GLARVVSAGDS---HVSTTIAGTVGYVAPEYGQT-WQATTKGDVYSFGVLAMELATGRRALEGGEECLV-EWGRRVMGYG 1027 (1088)
Q Consensus 953 g~a~~~~~~~~---~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~-~~~~~~~~~~ 1027 (1088)
|+++.+..... .......||+.|+|||++.+ ..++.++||||+||++|||++|+.||.+...... ..........
T Consensus 169 g~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~ 248 (351)
T 3mi9_A 169 GLARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSI 248 (351)
T ss_dssp TTCEECCCCSSSSCCCCCSSCSCGGGCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCC
T ss_pred hhcccccccccccccccCCcccccCccCchhhcCCCCCCcHhHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCC
Confidence 99987653221 22344578999999998765 5689999999999999999999999987654211 1111111000
Q ss_pred CCCCCccc-----cchhh-cCCCccccHH------HHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1028 RHGPGRAV-----IPVVL-LGSGLAEGAE------EMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1028 ~~~~~~~~-----~~~~~-~~~~~~~~~~------~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
........ ..... .......... ....+.+++.+|++.||++||+++|+++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 311 (351)
T 3mi9_A 249 TPEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALN 311 (351)
T ss_dssp CTTTSTTGGGCGGGTSSCCCSSCCCCHHHHHHHHHCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred ChhhccccccchhhcccccccccccCHHHHhhhccCChHHHHHHHHHhcCChhhCCCHHHHhC
Confidence 00000000 00000 0000000011 1245789999999999999999999975
No 227
>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*
Probab=100.00 E-value=9e-37 Score=346.98 Aligned_cols=244 Identities=27% Similarity=0.389 Sum_probs=198.9
Q ss_pred CCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCcc---chHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeE
Q 001384 805 GKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGLE---GEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEK 880 (1088)
Q Consensus 805 ~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~---~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~ 880 (1088)
++|+..+.||+|+||+||+|++. +++.||||++...... ..+.+.+|++++++ ++||||+++++++.++...
T Consensus 54 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~----l~hpniv~~~~~~~~~~~~ 129 (348)
T 1u5q_A 54 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQK----LRHPNTIQYRGCYLREHTA 129 (348)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHH----CCCTTBCCEEEEEEETTEE
T ss_pred hheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHh----CCCCCEeeEEEEEEECCeE
Confidence 45888999999999999999964 7899999999754322 23568899999987 6799999999999999999
Q ss_pred EEEEEecCCCCHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccceeec
Q 001384 881 ILVYEYMEGGSLEDIISD-RTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARVVS 959 (1088)
Q Consensus 881 ~lv~e~~~~gsL~~~l~~-~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~~ 959 (1088)
++||||++ |+|.+++.. ..++++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++...
T Consensus 130 ~lv~e~~~-g~l~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~ 205 (348)
T 1u5q_A 130 WLVMEYCL-GSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSH---NMIHRDVKAGNILLSEPGLVKLGDFGSASIMA 205 (348)
T ss_dssp EEEEECCS-EEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEEETTTEEEECCCTTCBSSS
T ss_pred EEEEecCC-CCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHEEECCCCCEEEeeccCceecC
Confidence 99999997 588888754 56799999999999999999999999 99999999999999999999999999997654
Q ss_pred CCCCcccccccccccccCccccC---CCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCCCCCcccc
Q 001384 960 AGDSHVSTTIAGTVGYVAPEYGQ---TWQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRHGPGRAVI 1036 (1088)
Q Consensus 960 ~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1036 (1088)
. .....||+.|+|||++. ...++.++|||||||++|||++|+.||.........+ ....... ..
T Consensus 206 ~-----~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~~~~--~~~~~~~-~~----- 272 (348)
T 1u5q_A 206 P-----ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALY--HIAQNES-PA----- 272 (348)
T ss_dssp S-----BCCCCSCGGGCCHHHHHTTSSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHH--HHHHSCC-CC-----
T ss_pred C-----CCcccCCcceeCHhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHH--HHHhcCC-CC-----
Confidence 2 23457899999999873 5678999999999999999999999998764422111 1110000 00
Q ss_pred chhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1037 PVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1037 ~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
.........+.+++.+|++.||++||+++++++
T Consensus 273 ---------~~~~~~~~~l~~li~~~l~~dP~~Rps~~~ll~ 305 (348)
T 1u5q_A 273 ---------LQSGHWSEYFRNFVDSCLQKIPQDRPTSEVLLK 305 (348)
T ss_dssp ---------CCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred ---------CCCCCCCHHHHHHHHHHcccChhhCcCHHHHhh
Confidence 001122356788999999999999999999975
No 228
>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}
Probab=100.00 E-value=1.8e-36 Score=357.35 Aligned_cols=261 Identities=20% Similarity=0.311 Sum_probs=207.2
Q ss_pred cCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeEEE
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGLEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEKIL 882 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~~l 882 (1088)
.++|++.+.||+|+||.||+|++. +++.||||++.... ...++..|++++..+. +|+++..+..++.+....++
T Consensus 6 ~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~--~~~~~~~E~~il~~L~---~~~~i~~i~~~~~~~~~~~l 80 (483)
T 3sv0_A 6 GNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKT--KHPQLLYESKIYRILQ---GGTGIPNVRWFGVEGDYNVL 80 (483)
T ss_dssp TTTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTC--SSCCHHHHHHHHHHTT---TSTTCCCEEEEEEETTEEEE
T ss_pred CCcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEecccc--ccHHHHHHHHHHHHhc---CCCCCCeEEEEEeeCCEEEE
Confidence 468999999999999999999974 68999999887553 2335778888888743 45777777778888899999
Q ss_pred EEEecCCCCHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEE---cCCCCEEEeecccceee
Q 001384 883 VYEYMEGGSLEDIISD-RTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLL---DKEGKALVTDFGLARVV 958 (1088)
Q Consensus 883 v~e~~~~gsL~~~l~~-~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll---~~~~~~kl~Dfg~a~~~ 958 (1088)
||||+ +++|.++++. ...+++.+++.|+.||+.||+|||++ +||||||||+|||| +.++.+||+|||+++.+
T Consensus 81 vme~~-g~sL~~ll~~~~~~l~~~~~~~i~~qi~~aL~yLH~~---gIvHrDIKP~NILl~~~~~~~~vkL~DFGla~~~ 156 (483)
T 3sv0_A 81 VMDLL-GPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFVHSK---SFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKY 156 (483)
T ss_dssp EEECC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECCGGGTTCEEECCCTTCEEC
T ss_pred EEECC-CCCHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHC---CEeecccCcceEEEecCCCCCeEEEEeCCcceec
Confidence 99999 8899999975 45799999999999999999999999 99999999999999 68899999999999887
Q ss_pred cCCCCc------ccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCch-hHHHHHHhhhccCCCCC
Q 001384 959 SAGDSH------VSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEE-CLVEWGRRVMGYGRHGP 1031 (1088)
Q Consensus 959 ~~~~~~------~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~-~~~~~~~~~~~~~~~~~ 1031 (1088)
...... ......||..|+|||++.+..++.++|||||||++|||++|+.||.+... ...+..........
T Consensus 157 ~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDvwSlGvil~elltG~~Pf~~~~~~~~~~~~~~i~~~~~--- 233 (483)
T 3sv0_A 157 RDTSTHQHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKV--- 233 (483)
T ss_dssp BCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSHHHHHHHHHHHHH---
T ss_pred cCCccccccccccccccCCCccccCHHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccchhHHHHHHHHhhccc---
Confidence 643322 12356799999999999999999999999999999999999999987533 11111111110000
Q ss_pred CccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhhCC
Q 001384 1032 GRAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKILP 1085 (1088)
Q Consensus 1032 ~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i~~ 1085 (1088)
....+.. ....+.++.+++.+|++.||++||++++|++.|++++.
T Consensus 234 -~~~~~~l--------~~~~p~~l~~li~~cl~~dP~~RPs~~el~~~L~~l~~ 278 (483)
T 3sv0_A 234 -ATSIEAL--------CRGYPTEFASYFHYCRSLRFDDKPDYSYLKRLFRDLFI 278 (483)
T ss_dssp -HSCHHHH--------HTTSCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHH
T ss_pred -cccHHHH--------hcCCcHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHH
Confidence 0000000 01223578899999999999999999999999998853
No 229
>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=2.9e-36 Score=343.41 Aligned_cols=268 Identities=26% Similarity=0.304 Sum_probs=198.1
Q ss_pred HHcCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCccc-----hHHHHHHHHHHhCCCCCCCCCceeEEeeEEe
Q 001384 802 KATGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGLEG-----EREFRAEMEVLSGNGFGWPHPNLVTLYGWCL 875 (1088)
Q Consensus 802 ~~~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~-----~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~ 875 (1088)
...++|++.+.||+|+||.||+|++. +|+.||||++....... .+.+.+|+++++. ++||||+++++++.
T Consensus 7 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~----l~h~~iv~~~~~~~ 82 (346)
T 1ua2_A 7 SRAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQE----LSHPNIIGLLDAFG 82 (346)
T ss_dssp ------CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHH----CCCTTBCCEEEEEC
T ss_pred HHhcccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhh----CCCCCCCeEEEEEe
Confidence 34578999999999999999999976 68999999997543221 2467889999987 67999999999999
Q ss_pred cCCeEEEEEEecCCCCHHHHHhhcC-CCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeeccc
Q 001384 876 DGSEKILVYEYMEGGSLEDIISDRT-RLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGL 954 (1088)
Q Consensus 876 ~~~~~~lv~e~~~~gsL~~~l~~~~-~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~ 954 (1088)
+....++||||+++ +|.+++.... .+++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+
T Consensus 83 ~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~kl~Dfg~ 158 (346)
T 1ua2_A 83 HKSNISLVFDFMET-DLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLHQH---WILHRDLKPNNLLLDENGVLKLADFGL 158 (346)
T ss_dssp CTTCCEEEEECCSE-EHHHHHTTCCSSCCSSHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECCCGG
T ss_pred eCCceEEEEEcCCC-CHHHHHHhcCcCCCHHHHHHHHHHHHHHHHHHHHC---CEECCCCCHHHEEEcCCCCEEEEeccc
Confidence 99999999999986 8999887654 689999999999999999999999 999999999999999999999999999
Q ss_pred ceeecCCCCcccccccccccccCccccCC-CCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHH-HHHHhhhccCC--CC
Q 001384 955 ARVVSAGDSHVSTTIAGTVGYVAPEYGQT-WQATTKGDVYSFGVLAMELATGRRALEGGEECLV-EWGRRVMGYGR--HG 1030 (1088)
Q Consensus 955 a~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~-~~~~~~~~~~~--~~ 1030 (1088)
++.+.... .......+|+.|+|||++.+ ..++.++||||+||++|||++|..||.+...... ........... ..
T Consensus 159 a~~~~~~~-~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 237 (346)
T 1ua2_A 159 AKSFGSPN-RAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDLDQLTRIFETLGTPTEEQW 237 (346)
T ss_dssp GSTTTSCC-CCCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCTTTS
T ss_pred ceeccCCc-ccCCcccccccccCchHhhCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHcCCCChhhh
Confidence 98764322 22344578999999998865 4589999999999999999999999987654211 11111110000 00
Q ss_pred CCccccchhh-cCCCcccc-----HHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1031 PGRAVIPVVL-LGSGLAEG-----AEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1031 ~~~~~~~~~~-~~~~~~~~-----~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
......+... .......+ .....++.+++.+|++.||++||+++|+++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 291 (346)
T 1ua2_A 238 PDMCSLPDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALK 291 (346)
T ss_dssp SSTTSSTTCCCCCCCCCCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred hhhccCcccccccccCCCChHHhhccCCHHHHHHHHHHhccChhhCCCHHHHhc
Confidence 0000000000 00000001 223467889999999999999999999986
No 230
>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}
Probab=100.00 E-value=7.3e-37 Score=347.35 Aligned_cols=253 Identities=25% Similarity=0.365 Sum_probs=187.4
Q ss_pred CCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEe--------
Q 001384 805 GKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGLEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCL-------- 875 (1088)
Q Consensus 805 ~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~-------- 875 (1088)
.+|++.+.||+|+||.||+|++. +++.||||++........+.+.+|+.++.++. .||||+++++++.
T Consensus 28 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~---~h~~iv~~~~~~~~~~~~~~~ 104 (337)
T 3ll6_A 28 LRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLS---GHPNIVQFCSAASIGKEESDT 104 (337)
T ss_dssp EEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHHHT---TSTTBCCEEEEEEECTTTSTT
T ss_pred ceEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCCchHHHHHHHHHHHHHHHhc---cCCChhhcccccccccccccc
Confidence 47899999999999999999975 78999999997765555677889999988732 5999999999984
Q ss_pred cCCeEEEEEEecCCCCHHHHHhh---cCCCCHHHHHHHHHHHHHHHHHHHhcCCCC--eEecCCCCCCEEEcCCCCEEEe
Q 001384 876 DGSEKILVYEYMEGGSLEDIISD---RTRLTWRRRLDIAIDVARALVFLHHECYPP--IVHRDVKASNVLLDKEGKALVT 950 (1088)
Q Consensus 876 ~~~~~~lv~e~~~~gsL~~~l~~---~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~--ivH~DLkp~NIll~~~~~~kl~ 950 (1088)
.....++||||++ |+|.+++.. ..++++.+++.++.|++.||+|||++ + |+||||||+||+++.++.+||+
T Consensus 105 ~~~~~~lv~e~~~-g~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~~~ivH~Dikp~NIl~~~~~~~kl~ 180 (337)
T 3ll6_A 105 GQAEFLLLTELCK-GQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMHRQ---KPPIIHRDLKVENLLLSNQGTIKLC 180 (337)
T ss_dssp SSEEEEEEEECCS-EEHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHTS---SSCCBCCCCCGGGCEECTTSCEEBC
T ss_pred CCceEEEEEEecC-CCHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhC---CCCEEEccCCcccEEECCCCCEEEe
Confidence 3445799999996 699998865 45699999999999999999999998 7 9999999999999999999999
Q ss_pred ecccceeecCCCCcc-----------cccccccccccCcccc---CCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhH
Q 001384 951 DFGLARVVSAGDSHV-----------STTIAGTVGYVAPEYG---QTWQATTKGDVYSFGVLAMELATGRRALEGGEECL 1016 (1088)
Q Consensus 951 Dfg~a~~~~~~~~~~-----------~~~~~gt~~y~aPE~~---~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~ 1016 (1088)
|||+++......... .....+|+.|+|||++ .+..++.++||||||+++|||++|+.||......
T Consensus 181 Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~- 259 (337)
T 3ll6_A 181 DFGSATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQHPFEDGAKL- 259 (337)
T ss_dssp CCTTCBCCSSCC-------------------------------CCTTSCSSHHHHHHHHHHHHHHHHHSSCCC-------
T ss_pred cCccceeccccCcccccccccccchhhccccCCCCcCChhhhhccccCCCChHHhHHHHHHHHHHHHhCCCCCcchhHH-
Confidence 999998765432211 1134689999999987 5667899999999999999999999999764321
Q ss_pred HHHHHhhhccCCCCCCccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhhCC
Q 001384 1017 VEWGRRVMGYGRHGPGRAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKILP 1085 (1088)
Q Consensus 1017 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i~~ 1085 (1088)
........ .+ ........+.+++.+|++.||++||+++|+++.|+++..
T Consensus 260 -~~~~~~~~----------~~---------~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~l~~~~~ 308 (337)
T 3ll6_A 260 -RIVNGKYS----------IP---------PHDTQYTVFHSLIRAMLQVNPEERLSIAEVVHQLQEIAA 308 (337)
T ss_dssp -------CC----------CC---------TTCCSSGGGHHHHHHHSCSSGGGSCCHHHHHHHHHHHHH
T ss_pred -HhhcCccc----------CC---------cccccchHHHHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence 11000000 00 011112347788999999999999999999999998753
No 231
>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}
Probab=100.00 E-value=4.5e-36 Score=334.06 Aligned_cols=249 Identities=22% Similarity=0.347 Sum_probs=198.9
Q ss_pred CCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeEEEE
Q 001384 805 GKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGLEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEKILV 883 (1088)
Q Consensus 805 ~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~~lv 883 (1088)
++|....+||+|+||.||+|.+. +++.||||++........+.+.+|+.+++. ++||||+++++++.+.+..++|
T Consensus 22 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~----l~h~~iv~~~~~~~~~~~~~lv 97 (295)
T 2clq_A 22 DENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKH----LKHKNIVQYLGSFSENGFIKIF 97 (295)
T ss_dssp CTTSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECCCC---HHHHHHHHHHHT----CCCTTBCCEEEEEEETTEEEEE
T ss_pred cCCCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCCchHHHHHHHHHHHHHHh----CCCCCEeeEeeEEEeCCcEEEE
Confidence 34556679999999999999975 688999999987655556788999999987 6799999999999999999999
Q ss_pred EEecCCCCHHHHHhhcC---CCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcC-CCCEEEeecccceeec
Q 001384 884 YEYMEGGSLEDIISDRT---RLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDK-EGKALVTDFGLARVVS 959 (1088)
Q Consensus 884 ~e~~~~gsL~~~l~~~~---~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~-~~~~kl~Dfg~a~~~~ 959 (1088)
|||+++++|.+++.... .+++..++.++.|++.||+|||++ +|+||||||+||+++. ++.+||+|||.+....
T Consensus 98 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~kl~Dfg~~~~~~ 174 (295)
T 2clq_A 98 MEQVPGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHDN---QIVHRDIKGDNVLINTYSGVLKISDFGTSKRLA 174 (295)
T ss_dssp EECCSEEEHHHHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTTCCEEECCTTTCEESC
T ss_pred EEeCCCCCHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHHhC---CEEccCCChhhEEEECCCCCEEEeecccccccC
Confidence 99999999999997652 467899999999999999999999 9999999999999987 8999999999998764
Q ss_pred CCCCcccccccccccccCccccCCC--CCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHH-HHHhhhccCCCCCCcccc
Q 001384 960 AGDSHVSTTIAGTVGYVAPEYGQTW--QATTKGDVYSFGVLAMELATGRRALEGGEECLVE-WGRRVMGYGRHGPGRAVI 1036 (1088)
Q Consensus 960 ~~~~~~~~~~~gt~~y~aPE~~~~~--~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 1036 (1088)
... .......|+..|+|||++... .++.++||||||+++|+|++|+.||......... +..... ..
T Consensus 175 ~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~--~~-------- 243 (295)
T 2clq_A 175 GIN-PCTETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYELGEPQAAMFKVGMF--KV-------- 243 (295)
T ss_dssp C------CCCCCCGGGCCHHHHHHGGGGCSHHHHHHHHHHHHHHHHHTSCTTGGGSSHHHHHHHHHHH--CC--------
T ss_pred CCC-CcccccCCCccccChhhhcCCCCCCCcHHHHHHHHHHHHHHHHCCCCccCCCchhHHHHhhccc--cc--------
Confidence 322 123345789999999987654 3889999999999999999999999754332211 111111 00
Q ss_pred chhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1037 PVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1037 ~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
....+.....++.+++.+|++.||++||+++|+++
T Consensus 244 -------~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~ 278 (295)
T 2clq_A 244 -------HPEIPESMSAEAKAFILKCFEPDPDKRACANDLLV 278 (295)
T ss_dssp -------CCCCCTTSCHHHHHHHHHTTCSSTTTSCCHHHHHT
T ss_pred -------cccccccCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence 00112223457888999999999999999999975
No 232
>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*
Probab=100.00 E-value=9.8e-37 Score=348.03 Aligned_cols=263 Identities=19% Similarity=0.249 Sum_probs=205.4
Q ss_pred cCCCCccceecccCceEEEEEEeCCCcEEEEEEccccCccch-----------------HHHHHHHHHHhCCCCCCCCCc
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLPDGREVAVKKLQREGLEGE-----------------REFRAEMEVLSGNGFGWPHPN 866 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~-----------------~~~~~E~~~l~~~~~~l~h~n 866 (1088)
.++|++.+.||+|+||.||+|++ +++.||||++........ +.+.+|++++.+ ++|||
T Consensus 30 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~----l~h~~ 104 (348)
T 2pml_X 30 INDYRIIRTLNQGKFNKIILCEK-DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITD----IKNEY 104 (348)
T ss_dssp ETTEEEEEEEECCSSCCEEEEEE-TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTT----CCCTT
T ss_pred cCceEEEEEEcCCCCeEEEEEEc-CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHh----CCCCC
Confidence 46899999999999999999999 899999999975422211 789999999987 67999
Q ss_pred eeEEeeEEecCCeEEEEEEecCCCCHHHH------Hhh--cCCCCHHHHHHHHHHHHHHHHHHHh-cCCCCeEecCCCCC
Q 001384 867 LVTLYGWCLDGSEKILVYEYMEGGSLEDI------ISD--RTRLTWRRRLDIAIDVARALVFLHH-ECYPPIVHRDVKAS 937 (1088)
Q Consensus 867 iv~l~~~~~~~~~~~lv~e~~~~gsL~~~------l~~--~~~l~~~~~~~i~~qi~~~L~yLH~-~~~~~ivH~DLkp~ 937 (1088)
|+++++++.+.+..++||||+++|+|.++ +.. ...+++..++.++.|++.||+|||+ . +|+||||||+
T Consensus 105 i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~---~i~H~dl~p~ 181 (348)
T 2pml_X 105 CLTCEGIITNYDEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSYIHNEK---NICHRDVKPS 181 (348)
T ss_dssp BCCCSEEEESSSEEEEEEECCTTCBSSEESSSEESSCSSSCCCCCHHHHHHHHHHHHHHHHHHHHTS---CEECCCCCGG
T ss_pred cceEEEEEeeCCeEEEEEeccCCCcHHHHHHHhhhhhhccccCCCHHHHHHHHHHHHHHHHHHhccC---CEeecCCChH
Confidence 99999999999999999999999999998 665 5679999999999999999999999 8 9999999999
Q ss_pred CEEEcCCCCEEEeecccceeecCCCCcccccccccccccCccccCCC-CCCc-chhHHHHHHHHHHHHhCCcCCCCCchh
Q 001384 938 NVLLDKEGKALVTDFGLARVVSAGDSHVSTTIAGTVGYVAPEYGQTW-QATT-KGDVYSFGVLAMELATGRRALEGGEEC 1015 (1088)
Q Consensus 938 NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~-~~DvwslG~~l~elltg~~p~~~~~~~ 1015 (1088)
||+++.++.+||+|||.+...... ......++..|+|||.+.+. .++. ++||||+|+++|||++|+.||......
T Consensus 182 Nil~~~~~~~kl~dfg~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~ 258 (348)
T 2pml_X 182 NILMDKNGRVKLSDFGESEYMVDK---KIKGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGICLYVMFYNVVPFSLKISL 258 (348)
T ss_dssp GEEECTTSCEEECCCTTCEECBTT---EECSSCSCGGGCCGGGGSSCCCEEHHHHHHHHHHHHHHHHHHSSCSSCCSSCS
T ss_pred hEEEcCCCcEEEeccccccccccc---cccCCCCCcCccCchhhcCCCCCCcchhhHHHHHHHHHHHHhCCCCCCCCCcH
Confidence 999999999999999999876432 33456789999999998876 6666 999999999999999999999876442
Q ss_pred HHHHHHhhhccCCCCCC--ccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1016 LVEWGRRVMGYGRHGPG--RAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1016 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
... ............. ......................+.+++.+|++.||.+||+++|+++
T Consensus 259 ~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rps~~e~l~ 322 (348)
T 2pml_X 259 VEL-FNNIRTKNIEYPLDRNHFLYPLTNKKSTCSNNFLSNEDIDFLKLFLRKNPAERITSEDALK 322 (348)
T ss_dssp HHH-HHHHTSCCCCCCCSSSSSTTTTCC--------CCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred HHH-HHHHhccCcCCccchhhhhccccccccccchhhcCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence 111 1111111100000 0000000000000001233467889999999999999999999986
No 233
>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*
Probab=100.00 E-value=1.5e-36 Score=339.25 Aligned_cols=251 Identities=25% Similarity=0.363 Sum_probs=199.7
Q ss_pred cCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeEEE
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGLEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEKIL 882 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~~l 882 (1088)
.++|++.+.||+|+||.||+|++. +++.||+|++........+.+.+|++++.. ++||||+++++++..++..++
T Consensus 18 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~e~~~l~~----l~h~~i~~~~~~~~~~~~~~l 93 (302)
T 2j7t_A 18 NEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILAT----CDHPYIVKLLGAYYHDGKLWI 93 (302)
T ss_dssp GGTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC----CCHHHHHHHHHHHHH----CCCTTBCCEEEEEECC-CEEE
T ss_pred ccceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCCCHHHHHHHHHHHHHHhc----CCCCCEeeeeeeeeeCCeEEE
Confidence 467999999999999999999986 589999999987655666789999999987 679999999999999999999
Q ss_pred EEEecCCCCHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccceeecCC
Q 001384 883 VYEYMEGGSLEDIISD-RTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARVVSAG 961 (1088)
Q Consensus 883 v~e~~~~gsL~~~l~~-~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~~~~ 961 (1088)
||||+++++|.+++.. ...+++.+++.++.|++.||+|||+. +++||||||+||+++.++.+||+|||++......
T Consensus 94 v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~ 170 (302)
T 2j7t_A 94 MIEFCPGGAVDAIMLELDRGLTEPQIQVVCRQMLEALNFLHSK---RIIHRDLKAGNVLMTLEGDIRLADFGVSAKNLKT 170 (302)
T ss_dssp EEECCTTEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTSCEEECCCHHHHHHHHH
T ss_pred EEEeCCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhcC---CcccCCCCHHHEEECCCCCEEEEECCCCcccccc
Confidence 9999999999999875 45699999999999999999999999 9999999999999999999999999987543211
Q ss_pred CCcccccccccccccCcccc-----CCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCCCCCcccc
Q 001384 962 DSHVSTTIAGTVGYVAPEYG-----QTWQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRHGPGRAVI 1036 (1088)
Q Consensus 962 ~~~~~~~~~gt~~y~aPE~~-----~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1036 (1088)
........|+..|+|||++ ....++.++||||+|+++|+|++|+.||.......... ....... . .
T Consensus 171 -~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~--~~~~~~~--~-~--- 241 (302)
T 2j7t_A 171 -LQKRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNPMRVLL--KIAKSDP--P-T--- 241 (302)
T ss_dssp -HHC-----CCGGGCCHHHHHHHHTTSTTTTTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHH--HHHHSCC--C-C---
T ss_pred -ccccccccCChhhcCCeeeccccCCCCCCchhhhHHHHHHHHHHHhcCCCCCccCCHHHHHH--HHhccCC--c-c---
Confidence 1112335689999999987 46788999999999999999999999998765422111 1110000 0 0
Q ss_pred chhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1037 PVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1037 ~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
...+......+.+++.+|++.||++||+++|+++
T Consensus 242 --------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~ 275 (302)
T 2j7t_A 242 --------LLTPSKWSVEFRDFLKIALDKNPETRPSAAQLLE 275 (302)
T ss_dssp --------CSSGGGSCHHHHHHHHHHSCSCTTTSCCHHHHTT
T ss_pred --------cCCccccCHHHHHHHHHHcccChhhCCCHHHHhc
Confidence 0012233457889999999999999999999875
No 234
>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...
Probab=100.00 E-value=4.9e-36 Score=344.77 Aligned_cols=262 Identities=23% Similarity=0.304 Sum_probs=194.5
Q ss_pred cCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCc--cchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCC--
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGL--EGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGS-- 878 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~-- 878 (1088)
.++|++.+.||+|+||.||+|.+. +++.||||++..... ...+.+.+|+.+++. ++||||+++++++....
T Consensus 24 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~----l~hpniv~~~~~~~~~~~~ 99 (371)
T 2xrw_A 24 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKC----VNHKNIIGLLNVFTPQKSL 99 (371)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHH----CCCTTBCCEEEEECSCCST
T ss_pred hhheeEeeeeEecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHHh----cCCCCccceEEeecccccc
Confidence 468999999999999999999975 688999999976422 233568899999987 67999999999997654
Q ss_pred ----eEEEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeeccc
Q 001384 879 ----EKILVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGL 954 (1088)
Q Consensus 879 ----~~~lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~ 954 (1088)
..++||||+++ +|.+++. ..+++.++..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+
T Consensus 100 ~~~~~~~lv~e~~~~-~l~~~~~--~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~NIl~~~~~~~kl~Dfg~ 173 (371)
T 2xrw_A 100 EEFQDVYIVMELMDA-NLCQVIQ--MELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGL 173 (371)
T ss_dssp TTCCEEEEEEECCSE-EHHHHHH--SCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECCCCC
T ss_pred ccccceEEEEEcCCC-CHHHHHh--hccCHHHHHHHHHHHHHHHHHHHHC---CeecccCCHHHEEEcCCCCEEEEEeec
Confidence 78999999975 8888886 3589999999999999999999999 999999999999999999999999999
Q ss_pred ceeecCCCCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCCC----
Q 001384 955 ARVVSAGDSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRHG---- 1030 (1088)
Q Consensus 955 a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~---- 1030 (1088)
++..... .......||+.|+|||++.+..++.++||||+||++|||++|+.||.+... ...+...........
T Consensus 174 a~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~-~~~~~~i~~~~~~~~~~~~ 250 (371)
T 2xrw_A 174 ARTAGTS--FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDH-IDQWNKVIEQLGTPCPEFM 250 (371)
T ss_dssp ------------------CTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSH-HHHHHHHHC-CCCCCHHHH
T ss_pred ccccccc--cccCCceecCCccCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCH-HHHHHHHHHHhCCCCHHHH
Confidence 9865422 223446789999999999988999999999999999999999999987643 222222111000000
Q ss_pred --------------------CCccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1031 --------------------PGRAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1031 --------------------~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
......+................++.+++.+|++.||++|||++|+++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~ 318 (371)
T 2xrw_A 251 KKLQPTVRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQ 318 (371)
T ss_dssp TTSCHHHHHHHHSSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred HHhhhHHHHHHhhCccccccchhhhcccccCcccccccccccHHHHHHHHHHCcCChhhCCCHHHHhC
Confidence 000000111111111112234678899999999999999999999986
No 235
>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*
Probab=100.00 E-value=3.5e-36 Score=353.00 Aligned_cols=198 Identities=26% Similarity=0.360 Sum_probs=168.1
Q ss_pred cCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccC--ccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecC---
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREG--LEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDG--- 877 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~--- 877 (1088)
.++|++.+.||+|+||.||+|+++ +++.||||++.... ....+.+.+|+++++. ++||||+++++++...
T Consensus 25 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~----l~h~nIv~l~~~~~~~~~~ 100 (432)
T 3n9x_A 25 PDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNR----LKSDYIIRLYDLIIPDDLL 100 (432)
T ss_dssp CTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHH----CCCTTBCCEEEECCCSCTT
T ss_pred cCCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHH----cCCCCcceEEEEEecCCCC
Confidence 468999999999999999999976 68899999997642 2234678899999997 6799999999998766
Q ss_pred --CeEEEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccc
Q 001384 878 --SEKILVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLA 955 (1088)
Q Consensus 878 --~~~~lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a 955 (1088)
...|+||||++ |+|.++++....+++..++.++.||+.||+|||+. +|+||||||+||+++.++.+||+|||++
T Consensus 101 ~~~~~~lv~e~~~-~~L~~~~~~~~~l~~~~~~~i~~qil~aL~~LH~~---givHrDlkp~NILl~~~~~~kL~DFGla 176 (432)
T 3n9x_A 101 KFDELYIVLEIAD-SDLKKLFKTPIFLTEEHIKTILYNLLLGENFIHES---GIIHRDLKPANCLLNQDCSVKVCDFGLA 176 (432)
T ss_dssp TCCCEEEEEECCS-EEHHHHHHSSCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTC
T ss_pred cCCeEEEEEecCC-cCHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCHHHeEECCCCCEEEccCCCc
Confidence 57899999996 59999999888899999999999999999999999 9999999999999999999999999999
Q ss_pred eeecCCCC---------------------cccccccccccccCcccc-CCCCCCcchhHHHHHHHHHHHHhCCcCC
Q 001384 956 RVVSAGDS---------------------HVSTTIAGTVGYVAPEYG-QTWQATTKGDVYSFGVLAMELATGRRAL 1009 (1088)
Q Consensus 956 ~~~~~~~~---------------------~~~~~~~gt~~y~aPE~~-~~~~~~~~~DvwslG~~l~elltg~~p~ 1009 (1088)
+....... .......||+.|+|||++ ....++.++||||+||++|||++|..||
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~~DiwSlG~il~ell~g~~p~ 252 (432)
T 3n9x_A 177 RTINSEKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPELILLQENYTKSIDIWSTGCIFAELLNMLQSH 252 (432)
T ss_dssp EEC-------------------------------CCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHTTCTTT
T ss_pred ccccccccccccccccccccccccccchhccccCCCCCccccCHHHHhcCCCCCcccccchHHHHHHHHHhccccc
Confidence 87653321 123556889999999975 6667999999999999999999854444
No 236
>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*
Probab=100.00 E-value=1.4e-36 Score=337.45 Aligned_cols=257 Identities=27% Similarity=0.398 Sum_probs=197.9
Q ss_pred CCCCccceecccCceEEEEEEeC--CCc--EEEEEEccccC---ccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecC
Q 001384 805 GKFSEDRIIGKGGFGTVYRGVLP--DGR--EVAVKKLQREG---LEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDG 877 (1088)
Q Consensus 805 ~~~~~~~~LG~G~~g~Vy~~~~~--~~~--~vavK~~~~~~---~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~ 877 (1088)
++|++.+.||+|+||.||+|++. +++ .||||++.... ....+.+.+|++++.+ ++||||+++++++.++
T Consensus 18 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~----l~h~~i~~~~~~~~~~ 93 (291)
T 1u46_A 18 KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHS----LDHRNLIRLYGVVLTP 93 (291)
T ss_dssp GGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHH----CCCTTBCCEEEEECSS
T ss_pred hHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHh----CCCCCcccEEEEEccC
Confidence 57899999999999999999853 333 68999987643 2334678899999987 6799999999999876
Q ss_pred CeEEEEEEecCCCCHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccce
Q 001384 878 SEKILVYEYMEGGSLEDIISDR-TRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLAR 956 (1088)
Q Consensus 878 ~~~~lv~e~~~~gsL~~~l~~~-~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~ 956 (1088)
. .++||||+++|+|.+++... ..+++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||++.
T Consensus 94 ~-~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~Nili~~~~~~kl~Dfg~~~ 169 (291)
T 1u46_A 94 P-MKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLESK---RFIHRDLAARNLLLATRDLVKIGDFGLMR 169 (291)
T ss_dssp S-CEEEEECCTTCBHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEEEETTEEEECCCTTCE
T ss_pred C-ceeeEecccCCCHHHHHHhccCCcCHHHHHHHHHHHHHHHHHHHhC---CcccCCCchheEEEcCCCCEEEccccccc
Confidence 5 88999999999999999764 5699999999999999999999999 99999999999999999999999999998
Q ss_pred eecCCCCc--ccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHh-CCcCCCCCchhHHHHHHhhhccCCCCCCc
Q 001384 957 VVSAGDSH--VSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELAT-GRRALEGGEECLVEWGRRVMGYGRHGPGR 1033 (1088)
Q Consensus 957 ~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 1033 (1088)
........ ......+|..|+|||.+.+..++.++||||+|+++|+|++ |+.||.+..... ..........
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~--~~~~~~~~~~----- 242 (291)
T 1u46_A 170 ALPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQ--ILHKIDKEGE----- 242 (291)
T ss_dssp ECCC-CCEEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCHHH--HHHHHHTSCC-----
T ss_pred cccccccchhhhccCCCCceeeCchhhcCCCCCchhhHHHHHHHHHHHHhCCCCCcccCCHHH--HHHHHHccCC-----
Confidence 77543322 1234467788999999988889999999999999999999 999998764421 1112211000
Q ss_pred cccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhhCCC
Q 001384 1034 AVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKILPH 1086 (1088)
Q Consensus 1034 ~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i~~~ 1086 (1088)
....+...+.++.+++.+|++.||++||++.++++.|+++...
T Consensus 243 ----------~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~ 285 (291)
T 1u46_A 243 ----------RLPRPEDCPQDIYNVMVQCWAHKPEDRPTFVALRDFLLEAQPT 285 (291)
T ss_dssp ----------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC--
T ss_pred ----------CCCCCcCcCHHHHHHHHHHccCCcccCcCHHHHHHHHHHhCcc
Confidence 0011223346788999999999999999999999999998653
No 237
>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*
Probab=100.00 E-value=1.2e-36 Score=343.17 Aligned_cols=249 Identities=25% Similarity=0.351 Sum_probs=197.7
Q ss_pred cCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCc--------cchHHHHHHHHHHhCCCCCCCCCceeEEeeEE
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGL--------EGEREFRAEMEVLSGNGFGWPHPNLVTLYGWC 874 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~--------~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~ 874 (1088)
.++|++.+.||+|+||.||+|++. +++.||||++..... .....+.+|++++++ ++||||+++++++
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~----l~h~~i~~~~~~~ 84 (322)
T 2ycf_A 9 RDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKK----LNHPCIIKIKNFF 84 (322)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHH----CCCTTBCCEEEEE
T ss_pred hhceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHh----CCCCCCceEeeEE
Confidence 457999999999999999999976 688999999875421 122357889999987 6799999999998
Q ss_pred ecCCeEEEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCC---EEEee
Q 001384 875 LDGSEKILVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGK---ALVTD 951 (1088)
Q Consensus 875 ~~~~~~~lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~---~kl~D 951 (1088)
..+. .++||||+++++|.+++.....+++.+++.++.|++.||+|||++ +|+||||||+||+++.++. +||+|
T Consensus 85 ~~~~-~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~NIl~~~~~~~~~~kl~D 160 (322)
T 2ycf_A 85 DAED-YYIVLELMEGGELFDKVVGNKRLKEATCKLYFYQMLLAVQYLHEN---GIIHRDLKPENVLLSSQEEDCLIKITD 160 (322)
T ss_dssp ESSS-EEEEEECCTTEETHHHHSTTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESSSSSSCCEEECC
T ss_pred cCCc-eEEEEecCCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHEEEecCCCCCeEEEcc
Confidence 7655 899999999999999998888899999999999999999999999 9999999999999987665 99999
Q ss_pred cccceeecCCCCcccccccccccccCcccc---CCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchh--HHHHHHhhhcc
Q 001384 952 FGLARVVSAGDSHVSTTIAGTVGYVAPEYG---QTWQATTKGDVYSFGVLAMELATGRRALEGGEEC--LVEWGRRVMGY 1026 (1088)
Q Consensus 952 fg~a~~~~~~~~~~~~~~~gt~~y~aPE~~---~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~--~~~~~~~~~~~ 1026 (1088)
||+++..... .......||+.|+|||++ ....++.++||||+|+++|+|++|+.||...... ........
T Consensus 161 fg~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~--- 235 (322)
T 2ycf_A 161 FGHSKILGET--SLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSLKDQITSG--- 235 (322)
T ss_dssp CTTCEECCCC--HHHHHHHSCCTTCCHHHHHHTTTTTCTTHHHHHHHHHHHHHHHHSSCSSCSTTCSSCHHHHHHHT---
T ss_pred Cccceecccc--cccccccCCcCccCchhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHHhC---
Confidence 9999876432 223345789999999985 3567899999999999999999999999764321 11111110
Q ss_pred CCCCCCccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1027 GRHGPGRAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1027 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
. ....+.. .......+.+++.+|++.||++||+++|+++
T Consensus 236 -~----~~~~~~~--------~~~~~~~~~~li~~~l~~dP~~Rps~~~~l~ 274 (322)
T 2ycf_A 236 -K----YNFIPEV--------WAEVSEKALDLVKKLLVVDPKARFTTEEALR 274 (322)
T ss_dssp -C----CCCCHHH--------HTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred -c----cccCchh--------hhhcCHHHHHHHHHHcccCHhhCCCHHHHhh
Confidence 0 0000000 1123457889999999999999999999974
No 238
>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...
Probab=100.00 E-value=5.6e-36 Score=333.97 Aligned_cols=265 Identities=25% Similarity=0.334 Sum_probs=200.8
Q ss_pred CCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCc--cchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeEE
Q 001384 805 GKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGL--EGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEKI 881 (1088)
Q Consensus 805 ~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~~ 881 (1088)
++|++.+.||+|+||.||+|+++ +|+.||||++..... .....+.+|++++++ ++||||+++++++..++..+
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~----l~h~~i~~~~~~~~~~~~~~ 78 (299)
T 2r3i_A 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKE----LNHPNIVKLLDVIHTENKLY 78 (299)
T ss_dssp TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC--------CCHHHHHHHHHHTT----CCCTTBCCEEEEEEETTEEE
T ss_pred chhhhhhhhccCCCeeEEEEEEcCCCceEEEEEeecCccchhhHHHHHHHHHHHHH----cCCCCeeeEEEEEecCCceE
Confidence 57899999999999999999976 689999999976432 223678899999987 67999999999999999999
Q ss_pred EEEEecCCCCHHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccceeec
Q 001384 882 LVYEYMEGGSLEDIISDR--TRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARVVS 959 (1088)
Q Consensus 882 lv~e~~~~gsL~~~l~~~--~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~~ 959 (1088)
+||||++ ++|.+++... ..+++..++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||.+....
T Consensus 79 lv~e~~~-~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~ 154 (299)
T 2r3i_A 79 LVFEFLH-QDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLARAFG 154 (299)
T ss_dssp EEEECCS-EEHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECSTTHHHHHC
T ss_pred EEEEccc-CCHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCCHHHeEEcCCCCEEECcchhhhhcc
Confidence 9999997 5999999765 4689999999999999999999999 99999999999999999999999999997654
Q ss_pred CCCCcccccccccccccCccccCCCC-CCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHH-HhhhccCCCC--CCccc
Q 001384 960 AGDSHVSTTIAGTVGYVAPEYGQTWQ-ATTKGDVYSFGVLAMELATGRRALEGGEECLVEWG-RRVMGYGRHG--PGRAV 1035 (1088)
Q Consensus 960 ~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~-~~~~~~~~~~--~~~~~ 1035 (1088)
... .......+|+.|+|||.+.+.. ++.++||||+|+++|+|++|+.||.+......... .......... .....
T Consensus 155 ~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (299)
T 2r3i_A 155 VPV-RTYTHEVVTLWYRAPEILLGAKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTS 233 (299)
T ss_dssp CCS-BCTTSCBCCCTTCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGG
T ss_pred CCc-cccCcccccccccCcHHhhccccCChHHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCCchhhhhHhhc
Confidence 322 1223456899999999887654 79999999999999999999999987654211111 1111000000 00000
Q ss_pred cc---hhhcCCC----ccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1036 IP---VVLLGSG----LAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1036 ~~---~~~~~~~----~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
.+ ....... .........++.+++.+|++.||++||+++|+++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~~~l~ 283 (299)
T 2r3i_A 234 MPDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALA 283 (299)
T ss_dssp STTCCTTSCCCCCCCHHHHSTTCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred CcccchhhhcccchhhHhhCCCCCHHHHHHHHHhcCcCcccCCCHHHHhc
Confidence 00 0000000 0001123457889999999999999999999986
No 239
>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A
Probab=100.00 E-value=4.4e-36 Score=333.19 Aligned_cols=250 Identities=22% Similarity=0.334 Sum_probs=186.0
Q ss_pred cCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCcc-chHHHHHHHH-HHhCCCCCCCCCceeEEeeEEecCCeE
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGLE-GEREFRAEME-VLSGNGFGWPHPNLVTLYGWCLDGSEK 880 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~-~~~~~~~E~~-~l~~~~~~l~h~niv~l~~~~~~~~~~ 880 (1088)
.++|++.+.||+|+||.||+|++. +++.||||++...... ...+...|.. .++. ++||||+++++++.+++..
T Consensus 6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~----~~h~~iv~~~~~~~~~~~~ 81 (290)
T 3fme_A 6 ADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRT----VDCPFTVTFYGALFREGDV 81 (290)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHHTT----CCCTTBCCEEEEEECSSSE
T ss_pred HHhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHHHh----CCCCeEEEEeeeeeccCCE
Confidence 357899999999999999999975 7899999999765322 2223333333 3443 6899999999999999999
Q ss_pred EEEEEecCCCCHHHHHhh----cCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccce
Q 001384 881 ILVYEYMEGGSLEDIISD----RTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLAR 956 (1088)
Q Consensus 881 ~lv~e~~~~gsL~~~l~~----~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~ 956 (1088)
++||||+++ +|.++++. ...+++..++.++.|++.||+|||+++ +|+||||||+||+++.++.+||+|||+++
T Consensus 82 ~lv~e~~~~-~l~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~--~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~ 158 (290)
T 3fme_A 82 WICMELMDT-SLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSKL--SVIHRDVKPSNVLINALGQVKMCDFGISG 158 (290)
T ss_dssp EEEEECCSE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHS--CCCCCCCSGGGCEECTTCCEEBCCC----
T ss_pred EEEEehhcc-chHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhcC--CeecCCCCHHHEEECCCCCEEEeecCCcc
Confidence 999999975 88877653 467999999999999999999999963 89999999999999999999999999998
Q ss_pred eecCCCCcccccccccccccCcccc----CCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCCCCC
Q 001384 957 VVSAGDSHVSTTIAGTVGYVAPEYG----QTWQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRHGPG 1032 (1088)
Q Consensus 957 ~~~~~~~~~~~~~~gt~~y~aPE~~----~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~ 1032 (1088)
..... .......||+.|+|||++ ....++.++||||+|+++|+|++|+.||.....................
T Consensus 159 ~~~~~--~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~-- 234 (290)
T 3fme_A 159 YLVDD--VAKDIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGTPFQQLKQVVEEPSPQL-- 234 (290)
T ss_dssp -------------CCCCCCSCHHHHSCCTTC--CCHHHHHHHHHHHHHHHHHTSCSSCCCSCHHHHHHHHHHSCCCCC--
T ss_pred ccccc--ccccccCCCccccChhhcChhhcCcCCCcHHHHHHHHHHHHHHHHCCCCccccCchHHHHHHHhccCCCCc--
Confidence 76432 223334689999999985 5668899999999999999999999999865443333332222110000
Q ss_pred ccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1033 RAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1033 ~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
.......++.+++.+|++.||++||+++|+++
T Consensus 235 --------------~~~~~~~~~~~li~~~l~~~p~~Rpt~~e~l~ 266 (290)
T 3fme_A 235 --------------PADKFSAEFVDFTSQCLKKNSKERPTYPELMQ 266 (290)
T ss_dssp --------------CTTTSCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred --------------ccccCCHHHHHHHHHHhhcChhhCcCHHHHHh
Confidence 01123356888999999999999999999986
No 240
>3an0_A Dual specificity mitogen-activated protein kinase; auto inhibition state, activation helix, serine/threonine-PR kinase; HET: ANK; 2.60A {Homo sapiens} PDB: 3vn9_A*
Probab=100.00 E-value=3.4e-36 Score=342.31 Aligned_cols=252 Identities=23% Similarity=0.342 Sum_probs=199.2
Q ss_pred HcCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCc-cchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeE
Q 001384 803 ATGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGL-EGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEK 880 (1088)
Q Consensus 803 ~~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~ 880 (1088)
..++|++.+.||+|+||.||+|++. +|+.||||++..... ....++..|..++.+ .++||||+++++++.+++..
T Consensus 49 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~~~~---~~~h~~iv~~~~~~~~~~~~ 125 (340)
T 3an0_A 49 KADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMR---TVDCPFTVTFYGALFREGDV 125 (340)
T ss_dssp CSSCEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCCCCHHHHHHHHHHHHHHT---TCCCTTTCCEEEEEECSSCE
T ss_pred ehhheeEeeEecccCCEEEEEEEEcCCCCEEEEEEeccccCcHHHHHHHHHHHHHHh---hcCCCcEEEEeeEEEeCCcE
Confidence 3467899999999999999999974 789999999976532 233455666665333 26899999999999999999
Q ss_pred EEEEEecCCCCHHHHHhh----cCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccce
Q 001384 881 ILVYEYMEGGSLEDIISD----RTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLAR 956 (1088)
Q Consensus 881 ~lv~e~~~~gsL~~~l~~----~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~ 956 (1088)
++||||+++ +|.+++.. ...+++..++.++.||+.||+|||+++ +|+||||||+||+++.++.+||+|||+++
T Consensus 126 ~lv~e~~~~-~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~--~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~ 202 (340)
T 3an0_A 126 WICMELMDT-SLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSKL--SVIHRDVKPSNVLINALGQVKMCDFGISG 202 (340)
T ss_dssp EEEECCCSE-EHHHHHHHHHHTSCCCCHHHHHHHHHHHHHHHHHHHHHT--CCCCCSCCSTTEEECSTTCEEECCCSHHH
T ss_pred EEEHHHhhC-cHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhcC--CeecCCCCHHHEEECCCCCEEEeeCCCce
Confidence 999999976 99988863 567999999999999999999999753 89999999999999999999999999997
Q ss_pred eecCCCCcccccccccccccCccccC----CCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCCCCC
Q 001384 957 VVSAGDSHVSTTIAGTVGYVAPEYGQ----TWQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRHGPG 1032 (1088)
Q Consensus 957 ~~~~~~~~~~~~~~gt~~y~aPE~~~----~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~ 1032 (1088)
.... ........||+.|+|||++. ...++.++|||||||++|||++|+.||................... .
T Consensus 203 ~~~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~-~-- 277 (340)
T 3an0_A 203 YLVD--SVAKTIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGTPFQQLKQVVEEPSP-Q-- 277 (340)
T ss_dssp HHSC--HHHHHHSSCCCCCCCHHHHSCCTTCCSCCHHHHHHHHHHHHHHHHHTSCSSCCCSCHHHHHHHHHHSCCC-C--
T ss_pred eccc--ccccccCCCCccccCccccccccccCCCCchhhHHHHHHHHHHHHHCCCCCccccchHHHHHHHhcCCCC-C--
Confidence 6642 12223357899999999854 4478999999999999999999999998654332222222211000 0
Q ss_pred ccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1033 RAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1033 ~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
. .......++.+++.+|++.||++||++.|+++
T Consensus 278 ---~----------~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~ 310 (340)
T 3an0_A 278 ---L----------PADKFSAEFVDFTSQCLKKNSKERPTYPELMQ 310 (340)
T ss_dssp ---C----------CGGGSCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred ---C----------CcccCCHHHHHHHHHHccCCcccCcCHHHHhc
Confidence 0 01123457889999999999999999999986
No 241
>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...
Probab=100.00 E-value=4.1e-36 Score=340.16 Aligned_cols=257 Identities=20% Similarity=0.261 Sum_probs=199.9
Q ss_pred CCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEec--CCeEE
Q 001384 805 GKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGLEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLD--GSEKI 881 (1088)
Q Consensus 805 ~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~--~~~~~ 881 (1088)
++|++.+.||+|+||+||+|++. +++.||||++... ..+.+.+|++++.++. .||||+++++++.+ ....+
T Consensus 36 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~E~~~l~~l~---~~~~i~~~~~~~~~~~~~~~~ 109 (330)
T 3nsz_A 36 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPV---KKKKIKREIKILENLR---GGPNIITLADIVKDPVSRTPA 109 (330)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSC---CHHHHHHHHHHHHHHT---TSTTBCCEEEEEECTTTCCEE
T ss_pred CceEEEEEecccCCeEEEEEEECCCCcEEEEEEeccc---chHHHHHHHHHHHHcC---CCCCEEEeeeeeccCCCCceE
Confidence 57999999999999999999964 7899999999754 4567889999998732 49999999999987 66789
Q ss_pred EEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCC-CEEEeecccceeecC
Q 001384 882 LVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEG-KALVTDFGLARVVSA 960 (1088)
Q Consensus 882 lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~-~~kl~Dfg~a~~~~~ 960 (1088)
+||||+++++|.++++. +++.+++.++.|++.||+|||++ +|+||||||+||+++.++ .+||+|||+++....
T Consensus 110 lv~e~~~~~~l~~~~~~---~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~ 183 (330)
T 3nsz_A 110 LVFEHVNNTDFKQLYQT---LTDYDIRFYMYEILKALDYCHSM---GIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHP 183 (330)
T ss_dssp EEEECCCCCCHHHHGGG---CCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTTTEEEECCCTTCEECCT
T ss_pred EEEeccCchhHHHHHHh---CCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHEEEcCCCCEEEEEeCCCceEcCC
Confidence 99999999999999854 89999999999999999999999 999999999999999777 899999999987654
Q ss_pred CCCcccccccccccccCccccCC-CCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhh------------hccC
Q 001384 961 GDSHVSTTIAGTVGYVAPEYGQT-WQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRV------------MGYG 1027 (1088)
Q Consensus 961 ~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~------------~~~~ 1027 (1088)
.. ......++..|+|||++.+ ..++.++||||+||++|||++|+.||.............. ....
T Consensus 184 ~~--~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 261 (330)
T 3nsz_A 184 GQ--EYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYN 261 (330)
T ss_dssp TC--CCCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHTT
T ss_pred CC--ccccccccccccChhhhcCCCcCCchhhHHHHHHHHHHHHhCCCCcccCCchHHHHHHHHHhcCCchhhhHHHHhc
Confidence 32 2344578999999998776 6789999999999999999999999965433211111100 0000
Q ss_pred CCC----------CCccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1028 RHG----------PGRAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1028 ~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
... ............ ........++.+++.+|++.||++|||++|+++
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~li~~~L~~dP~~Rpta~e~l~ 319 (330)
T 3nsz_A 262 IELDPRFNDILGRHSRKRWERFVHS---ENQHLVSPEALDFLDKLLRYDHQSRLTAREAME 319 (330)
T ss_dssp CCCCTHHHHHHCCCCCCCGGGGCCT---TTGGGCCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred cccccchhhhhhhccccchhhhccc---cccccCCHHHHHHHHHHhcCCcccCCCHHHHhc
Confidence 000 000000000000 011223567889999999999999999999986
No 242
>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}
Probab=100.00 E-value=1.3e-35 Score=332.05 Aligned_cols=249 Identities=21% Similarity=0.324 Sum_probs=198.1
Q ss_pred HcCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccC----ccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEe--
Q 001384 803 ATGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREG----LEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCL-- 875 (1088)
Q Consensus 803 ~~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~----~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~-- 875 (1088)
..++|++.+.||+|+||.||+|.+. +++.||+|++.... ......+.+|+++++. ++||||+++++++.
T Consensus 3 l~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~----l~h~~i~~~~~~~~~~ 78 (305)
T 2wtk_C 3 LIGKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRR----LRHKNVIQLVDVLYNE 78 (305)
T ss_dssp --CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTT----CCCTTBCCEEEEEECC
T ss_pred cccceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHh----cCCCCeeEEEEEEEcC
Confidence 3578999999999999999999975 68899999997642 2335678999999987 67999999999984
Q ss_pred cCCeEEEEEEecCCCCHHHHHhh--cCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecc
Q 001384 876 DGSEKILVYEYMEGGSLEDIISD--RTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFG 953 (1088)
Q Consensus 876 ~~~~~~lv~e~~~~gsL~~~l~~--~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg 953 (1088)
+....++||||++++ |.+++.. ...+++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||
T Consensus 79 ~~~~~~lv~e~~~~~-l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~---~i~H~dlkp~NIl~~~~~~~kl~dfg 154 (305)
T 2wtk_C 79 EKQKMYMVMEYCVCG-MQEMLDSVPEKRFPVCQAHGYFCQLIDGLEYLHSQ---GIVHKDIKPGNLLLTTGGTLKISALG 154 (305)
T ss_dssp ---CEEEEEECCSEE-HHHHHHHSTTCSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCT
T ss_pred CCCeEEEEehhccCC-HHHHHHhCcccccCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCcccEEEcCCCcEEeeccc
Confidence 456789999999876 8777765 34699999999999999999999999 99999999999999999999999999
Q ss_pred cceeecCCC-CcccccccccccccCccccCCCC--CCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCCC
Q 001384 954 LARVVSAGD-SHVSTTIAGTVGYVAPEYGQTWQ--ATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRHG 1030 (1088)
Q Consensus 954 ~a~~~~~~~-~~~~~~~~gt~~y~aPE~~~~~~--~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~ 1030 (1088)
.+....... ........|+..|+|||+..+.. ++.++||||+|+++|||++|+.||.+.... +..........
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~--~~~~~i~~~~~-- 230 (305)
T 2wtk_C 155 VAEALHPFAADDTCRTSQGSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNITTGLYPFEGDNIY--KLFENIGKGSY-- 230 (305)
T ss_dssp TCEECCTTCSSCEECCCCSCGGGCCHHHHTCCSCEESHHHHHHHHHHHHHHHHHSSCSCCCSSHH--HHHHHHHHCCC--
T ss_pred cccccCccccccccccCCCCCCCcChhhccCcccCCcchhhHHHHHHHHHHHHhCCCCCCCchHH--HHHHHHhcCCC--
Confidence 998765322 22234557899999999887643 478999999999999999999999875431 11111110000
Q ss_pred CCccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1031 PGRAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1031 ~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
..+......+.+++.+|++.||++||+++|+++
T Consensus 231 ---------------~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~ 263 (305)
T 2wtk_C 231 ---------------AIPGDCGPPLSDLLKGMLEYEPAKRFSIRQIRQ 263 (305)
T ss_dssp ---------------CCCSSSCHHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred ---------------CCCCccCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence 001123356788999999999999999999985
No 243
>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=3.2e-36 Score=345.30 Aligned_cols=258 Identities=23% Similarity=0.297 Sum_probs=194.8
Q ss_pred cCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCc--cchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCC--
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGL--EGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGS-- 878 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~-- 878 (1088)
.++|++.+.||+|+||.||+|++. +|+.||||++..... ...+.+.+|+++++. ++||||+++++++....
T Consensus 24 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~----l~hpnIv~l~~~~~~~~~~ 99 (367)
T 1cm8_A 24 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKH----MRHENVIGLLDVFTPDETL 99 (367)
T ss_dssp BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHH----CCBTTBCCCSEEECSCSST
T ss_pred cceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHh----CCCcCCCCceeeEecCCcc
Confidence 468999999999999999999975 689999999965422 224568899999997 67999999999998653
Q ss_pred ----eEEEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeeccc
Q 001384 879 ----EKILVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGL 954 (1088)
Q Consensus 879 ----~~~lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~ 954 (1088)
..|+||||+ +++|.++++. .++++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+
T Consensus 100 ~~~~~~~lv~e~~-~~~L~~~~~~-~~l~~~~~~~~~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~Dfg~ 174 (367)
T 1cm8_A 100 DDFTDFYLVMPFM-GTDLGKLMKH-EKLGEDRIQFLVYQMLKGLRYIHAA---GIIHRDLKPGNLAVNEDCELKILDFGL 174 (367)
T ss_dssp TTCCCCEEEEECC-SEEHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTT
T ss_pred ccCceEEEEEecC-CCCHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHC---CccccCcCHHHEEEcCCCCEEEEeeec
Confidence 469999999 7799999976 5699999999999999999999999 999999999999999999999999999
Q ss_pred ceeecCCCCcccccccccccccCccccCC-CCCCcchhHHHHHHHHHHHHhCCcCCCCCchhH-HHHHHhhhccCCCCCC
Q 001384 955 ARVVSAGDSHVSTTIAGTVGYVAPEYGQT-WQATTKGDVYSFGVLAMELATGRRALEGGEECL-VEWGRRVMGYGRHGPG 1032 (1088)
Q Consensus 955 a~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~-~~~~~~~~~~~~~~~~ 1032 (1088)
++..... .....+|..|+|||++.+ ..++.++||||+||++|||++|+.||.+..... ........ . ...
T Consensus 175 a~~~~~~----~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~l~~i~~~~--g--~~~ 246 (367)
T 1cm8_A 175 ARQADSE----MTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLKEIMKVT--G--TPP 246 (367)
T ss_dssp CEECCSS----CCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHH--C--CCC
T ss_pred ccccccc----cCcCcCCCCcCCHHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhc--C--CCC
Confidence 9875422 334578999999998766 689999999999999999999999998764311 11000000 0 000
Q ss_pred ccccc---------------hhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1033 RAVIP---------------VVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1033 ~~~~~---------------~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
.+... .................+.+++.+|++.||++|||++|+++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~mL~~dP~~R~t~~e~l~ 307 (367)
T 1cm8_A 247 AEFVQRLQSDEAKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAGEALA 307 (367)
T ss_dssp HHHHHTCSCHHHHHHHHHSCCCCCCCGGGTCTTCCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHhCCCCCCCCHHHHCCCCCHHHHHHHHHHccCChhHCCCHHHHhc
Confidence 00000 00000000011223457888999999999999999999987
No 244
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=100.00 E-value=1.4e-36 Score=372.77 Aligned_cols=257 Identities=26% Similarity=0.355 Sum_probs=205.4
Q ss_pred HcCCCCccceecccCceEEEEEEeCC----CcEEEEEEccccCc-cchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecC
Q 001384 803 ATGKFSEDRIIGKGGFGTVYRGVLPD----GREVAVKKLQREGL-EGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDG 877 (1088)
Q Consensus 803 ~~~~~~~~~~LG~G~~g~Vy~~~~~~----~~~vavK~~~~~~~-~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~ 877 (1088)
..++|++.+.||+|+||.||+|++.. +..||||++..... ...+.+.+|+.++++ ++||||+++++++. +
T Consensus 388 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~----l~HpnIv~l~~~~~-~ 462 (656)
T 2j0j_A 388 QRERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQ----FDHPHIVKLIGVIT-E 462 (656)
T ss_dssp CGGGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHHHHHHH----CCCTTBCCEEEEEC-S
T ss_pred ccccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHHHHHHh----CCCCCCCeEEEEEe-c
Confidence 35678999999999999999999742 45799999876432 233678899999987 67999999999985 4
Q ss_pred CeEEEEEEecCCCCHHHHHhhcC-CCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccce
Q 001384 878 SEKILVYEYMEGGSLEDIISDRT-RLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLAR 956 (1088)
Q Consensus 878 ~~~~lv~e~~~~gsL~~~l~~~~-~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~ 956 (1088)
+..++||||+++|+|.++++... .+++..++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++
T Consensus 463 ~~~~lv~E~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDikp~NILl~~~~~vkL~DFG~a~ 539 (656)
T 2j0j_A 463 NPVWIIMELCTLGELRSFLQVRKFSLDLASLILYAYQLSTALAYLESK---RFVHRDIAARNVLVSSNDCVKLGDFGLSR 539 (656)
T ss_dssp SSCEEEEECCTTCBHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCCCCCC
T ss_pred CceEEEEEcCCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhC---CccccccchHhEEEeCCCCEEEEecCCCe
Confidence 56899999999999999998654 689999999999999999999999 99999999999999999999999999998
Q ss_pred eecCCCCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHh-CCcCCCCCchhHHHHHHhhhccCCCCCCccc
Q 001384 957 VVSAGDSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELAT-GRRALEGGEECLVEWGRRVMGYGRHGPGRAV 1035 (1088)
Q Consensus 957 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1035 (1088)
..............+|+.|+|||++.+..++.++||||||+++|||++ |..||.+...... .......
T Consensus 540 ~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~~~--~~~i~~~--------- 608 (656)
T 2j0j_A 540 YMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDV--IGRIENG--------- 608 (656)
T ss_dssp SCCC----------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHH--HHHHHHT---------
T ss_pred ecCCCcceeccCCCCCcceeCHHHhcCCCCCchhhHHHHHHHHHHHHHcCCCCCCCCCHHHH--HHHHHcC---------
Confidence 765443333344567789999999988899999999999999999997 9999987644211 1111100
Q ss_pred cchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhhCC
Q 001384 1036 IPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKILP 1085 (1088)
Q Consensus 1036 ~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i~~ 1085 (1088)
...+.+...+..+.+++.+|++.||++||++.|+++.|+++++
T Consensus 609 -------~~~~~~~~~~~~l~~li~~~l~~dP~~RPs~~el~~~L~~il~ 651 (656)
T 2j0j_A 609 -------ERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILE 651 (656)
T ss_dssp -------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred -------CCCCCCccccHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHH
Confidence 0011122334678899999999999999999999999998863
No 245
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.4e-35 Score=353.81 Aligned_cols=343 Identities=19% Similarity=0.195 Sum_probs=263.1
Q ss_pred CEEEcCCCcccccCcccccCCCCCcEEEccCccccCCCccccCCCCCCCEEeCCCCcCCccCcccccCCCCCcEEEcCCC
Q 001384 247 EIFDLSENEFIGDFPGEVSNCRNLVVLNLFGNNFSGPIPAEIGSISGLEALFLGKNNFLSVIPESLLNLSKLEVLDLSSN 326 (1088)
Q Consensus 247 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N 326 (1088)
+.++.++++++ .+|..+. +++++|+|++|++++..+..|..+++|++|+|++|.+++..|..|.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 45666666665 5565543 57788888888887766777788888888888888887777777888888888888888
Q ss_pred cCCCchhHhhhcccccceeecCcCcccCCCCCccccCCCCcCEEEccCCccCCCCCccccCCcCcceeeccccccCCcCC
Q 001384 327 NFGGEVQKIFGRFTQVKILALHSNSYIDGMNSSGILKLPNISRLDLSHNNFTGPLPVEISQMRSLKFLILAHNRFNGSIP 406 (1088)
Q Consensus 327 ~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p 406 (1088)
.+++.++.. |.++++|++|+|++|++++..|..|..+++|+.|++++|.+++..|
T Consensus 91 ~l~~~~~~~-------------------------~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 145 (477)
T 2id5_A 91 RLKLIPLGV-------------------------FTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISH 145 (477)
T ss_dssp CCCSCCTTS-------------------------STTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECT
T ss_pred cCCccCccc-------------------------ccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeCh
Confidence 776554433 3456677778888888877777788888888888888888887778
Q ss_pred cccCCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEccccccccCCCccccCCCCCCeEEccCCcCccCCCchhhccCC
Q 001384 407 AVYGNMPNLQTLDLSFNELTGPIPPSIGNLTSLLWLMLANNSLSGEIPGEIGNCTSLLWLNLSNNKLSGNIPPEVMTIGR 486 (1088)
Q Consensus 407 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~~~~~~~ 486 (1088)
..|.++++|++|+|++|++++..+..+.++++|+.|+|++|.+++..+..+.++++|+.|++++|++.+.+|......
T Consensus 146 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-- 223 (477)
T 2id5_A 146 RAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG-- 223 (477)
T ss_dssp TSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTT--
T ss_pred hhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccC--
Confidence 888888888888888888886555668888888888888888887777788888888888888888776666543210
Q ss_pred CCCccccccccCCcccccCCccccccccccCCCCCCCcceeeehhccccchhhhhcccCCcccccccCCCcccceeeece
Q 001384 487 NARPTFEANQRNGERTIAGSSECLSMKRWIPADYPPFSFVYTILTRKSCRSLWDRLLKGTGIFPVCLPGLASRTFQITGY 566 (1088)
Q Consensus 487 ~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~l~~ 566 (1088)
..+++
T Consensus 224 ---------------------------------------------------------------------------~~L~~ 228 (477)
T 2id5_A 224 ---------------------------------------------------------------------------LNLTS 228 (477)
T ss_dssp ---------------------------------------------------------------------------CCCSE
T ss_pred ---------------------------------------------------------------------------ccccE
Confidence 02457
Q ss_pred EEccCCccccccCcccccCCCccEEeccccccccCCCCcccCc-cceEEEccCCcccccCCccccCCccCcEEEcccccc
Q 001384 567 LQLSGNQLSGELSPDIGKLQNFSMVHLGFNQFDGKLPSQFDQL-PLIVLNLTRNNFSGEIPSEFGNIKCLQNLDLSYNNF 645 (1088)
Q Consensus 567 L~l~~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~l-~l~~l~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l 645 (1088)
|+|++|++++..+..++.+++|+.|+|++|++++..+..+..+ .|+.|+|++|++++..|..|.++++|+.|+|++|+|
T Consensus 229 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 308 (477)
T 2id5_A 229 LSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQL 308 (477)
T ss_dssp EEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCC
T ss_pred EECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcC
Confidence 8888888885444678889999999999999998888888877 699999999999988899999999999999999999
Q ss_pred CCcCCcccccccccceeeccCCCCccccCCCCCcccccccCccCCCCCCC
Q 001384 646 SGPFPASFNNLTELSKLNISYNPLVSGTIPSTGQLATFEKTSYLGDPLLD 695 (1088)
Q Consensus 646 ~g~~p~~~~~l~~L~~l~l~~N~l~~g~ip~~~~~~~~~~~~~~~n~~~~ 695 (1088)
++..|..|..+++|+.|+|++|+|.+. .+....+.......+.++...|
T Consensus 309 ~~~~~~~~~~l~~L~~L~l~~N~l~c~-c~~~~~~~~~~~~~~~~~~~~C 357 (477)
T 2id5_A 309 TTLEESVFHSVGNLETLILDSNPLACD-CRLLWVFRRRWRLNFNRQQPTC 357 (477)
T ss_dssp SCCCGGGBSCGGGCCEEECCSSCEECS-GGGHHHHTTTTSSCCTTCCCBE
T ss_pred ceeCHhHcCCCcccCEEEccCCCccCc-cchHhHHhhhhccccCccCcee
Confidence 976667789999999999999999542 2211111222234456666665
No 246
>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*
Probab=100.00 E-value=1.2e-36 Score=350.24 Aligned_cols=254 Identities=11% Similarity=0.009 Sum_probs=181.6
Q ss_pred CCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCc---cchHHHHHHHHHHhCCCCCCCCCceeEEe-------eE
Q 001384 805 GKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGL---EGEREFRAEMEVLSGNGFGWPHPNLVTLY-------GW 873 (1088)
Q Consensus 805 ~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~~~~~l~h~niv~l~-------~~ 873 (1088)
.+|++.+.||+|+||.||+|++. +|+.||||++..... ...+.+.+|++++..+. . +||||++++ ++
T Consensus 62 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~-~-~hp~iv~~~~~~~~p~d~ 139 (371)
T 3q60_A 62 RKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLL-G-ESPEEARDRRRLLLPSDA 139 (371)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHH-C-----------CBCCCCEE
T ss_pred eeeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhc-c-cChhhhhhceeEEeeehh
Confidence 35888999999999999999976 789999999987543 22346777865554433 2 699988755 34
Q ss_pred EecC-----------------CeEEEEEEecCCCCHHHHHhhc-CCCCHHHH------HHHHHHHHHHHHHHHhcCCCCe
Q 001384 874 CLDG-----------------SEKILVYEYMEGGSLEDIISDR-TRLTWRRR------LDIAIDVARALVFLHHECYPPI 929 (1088)
Q Consensus 874 ~~~~-----------------~~~~lv~e~~~~gsL~~~l~~~-~~l~~~~~------~~i~~qi~~~L~yLH~~~~~~i 929 (1088)
+..+ ...|+||||++ |+|.++++.. ..+.+..+ ..++.||+.||+|||++ +|
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~vk~~i~~qi~~aL~~LH~~---~i 215 (371)
T 3q60_A 140 VAVQSQPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTLDFVYVFRGDEGILALHILTAQLIRLAANLQSK---GL 215 (371)
T ss_dssp EEETTSCSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHHHHHT---TE
T ss_pred eecCCCCCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHHhccccchhhhhhhhhHHHHHHHHHHHHHHHHHC---CC
Confidence 4332 34799999998 7999999864 34555666 68889999999999999 99
Q ss_pred EecCCCCCCEEEcCCCCEEEeecccceeecCCCCcccccccccccccCccccCC--CCCCcchhHHHHHHHHHHHHhCCc
Q 001384 930 VHRDVKASNVLLDKEGKALVTDFGLARVVSAGDSHVSTTIAGTVGYVAPEYGQT--WQATTKGDVYSFGVLAMELATGRR 1007 (1088)
Q Consensus 930 vH~DLkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~~DvwslG~~l~elltg~~ 1007 (1088)
+||||||+||+++.++.+||+|||+++.... ......+|+.|+|||++.+ ..++.++||||+||++|||++|+.
T Consensus 216 vHrDikp~NIll~~~~~~kL~DFG~a~~~~~----~~~~~~~t~~y~aPE~~~~~~~~~~~~~DiwSlG~il~elltg~~ 291 (371)
T 3q60_A 216 VHGHFTPDNLFIMPDGRLMLGDVSALWKVGT----RGPASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWCLFL 291 (371)
T ss_dssp EETTCSGGGEEECTTSCEEECCGGGEEETTC----EEEGGGSCGGGCCHHHHTCSEEECCHHHHHHHHHHHHHHHHHSSC
T ss_pred ccCcCCHHHEEECCCCCEEEEecceeeecCC----CccCccCCcCCcChhhccCCCCCcCccccHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999986532 1223456799999999887 789999999999999999999999
Q ss_pred CCCCCchhHHHHHHhhhccCCCCCCccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1008 ALEGGEECLVEWGRRVMGYGRHGPGRAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1008 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
||.+........ +.... ...........+.....+..+.+++.+|++.||++||++.|+++
T Consensus 292 Pf~~~~~~~~~~------~~~~~----~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 352 (371)
T 3q60_A 292 PFGLVTPGIKGS------WKRPS----LRVPGTDSLAFGSCTPLPDFVKTLIGRFLNFDRRRRLLPLEAME 352 (371)
T ss_dssp STTBCCTTCTTC------CCBCC----TTSCCCCSCCCTTSSCCCHHHHHHHHHHTCSSTTTCCCHHHHTT
T ss_pred CCCCcCcccccc------hhhhh----hhhccccccchhhccCCCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence 998753311000 00000 00000000001111233567888999999999999999999864
No 247
>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*
Probab=100.00 E-value=2.3e-36 Score=337.70 Aligned_cols=260 Identities=27% Similarity=0.386 Sum_probs=185.9
Q ss_pred HcCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCc-cchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeE
Q 001384 803 ATGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGL-EGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEK 880 (1088)
Q Consensus 803 ~~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~ 880 (1088)
..++|++.+.||+|+||.||+|.+. +++.||||++..... ...+++.+|++++.+ ++||||+++++++...+..
T Consensus 13 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~----l~h~~i~~~~~~~~~~~~~ 88 (303)
T 2vwi_A 13 NRDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQ----CHHPNIVSYYTSFVVKDEL 88 (303)
T ss_dssp CCCCCEEEEECC---CCCEEEEEC----CEEEEECCC----------------CCCC----CCCTTBCCEEEEEESSSCE
T ss_pred chhhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhcchhHHHHHHHHHHHhh----cCCCCEeeEEEEEeecCCc
Confidence 3578999999999999999999975 689999999875432 234567788888775 6899999999999999999
Q ss_pred EEEEEecCCCCHHHHHhh--------cCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeec
Q 001384 881 ILVYEYMEGGSLEDIISD--------RTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDF 952 (1088)
Q Consensus 881 ~lv~e~~~~gsL~~~l~~--------~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Df 952 (1088)
++||||+++++|.+++.. ...+++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+||+||
T Consensus 89 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~df 165 (303)
T 2vwi_A 89 WLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHKN---GQIHRDVKAGNILLGEDGSVQIADF 165 (303)
T ss_dssp EEEEECCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTCCEEECCC
T ss_pred EEEehhccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHHhC---CCCCCCCChhhEEEcCCCCEEEEec
Confidence 999999999999999864 44699999999999999999999999 9999999999999999999999999
Q ss_pred ccceeecCCCC----cccccccccccccCccccCC-CCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccC
Q 001384 953 GLARVVSAGDS----HVSTTIAGTVGYVAPEYGQT-WQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYG 1027 (1088)
Q Consensus 953 g~a~~~~~~~~----~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~ 1027 (1088)
|.+........ .......||+.|+|||++.. ..++.++||||+|+++|||++|+.||............ .. ..
T Consensus 166 g~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~-~~-~~ 243 (303)
T 2vwi_A 166 GVSAFLATGGDITRNKVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPYHKYPPMKVLMLT-LQ-ND 243 (303)
T ss_dssp HHHHHCC---------------CCCTTCCHHHHHHHHCCCTHHHHHHHHHHHHHHHHSSCTTTTSCGGGHHHHH-HT-SS
T ss_pred cchheeccCCCccchhhhcccCCCccccCHHHhccccCCCchhhHHHHHHHHHHHHhCCCCCccCchhhHHHHH-hc-cC
Confidence 99876543221 11234578999999998765 56899999999999999999999999876442221111 11 00
Q ss_pred CCCCCccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1028 RHGPGRAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1028 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
.........+.. .......++.+++.+|++.||.+||++.|+++
T Consensus 244 ~~~~~~~~~~~~-------~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~ 287 (303)
T 2vwi_A 244 PPSLETGVQDKE-------MLKKYGKSFRKMISLCLQKDPEKRPTAAELLR 287 (303)
T ss_dssp CCCTTC-----C-------CCCCCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred CCccccccccch-------hhhhhhHHHHHHHHHHccCChhhCcCHHHHhh
Confidence 000000000000 01122356888999999999999999999986
No 248
>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.4e-36 Score=341.46 Aligned_cols=255 Identities=25% Similarity=0.396 Sum_probs=198.8
Q ss_pred HHHHHcCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEec-
Q 001384 799 DILKATGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGLEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLD- 876 (1088)
Q Consensus 799 ~~~~~~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~- 876 (1088)
++....++|++.+.||+|+||.||+|++. +++.||||++.... .....+.+|+.++.++. +||||+++++++..
T Consensus 18 ~l~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~-~~~~~~~~e~~~l~~l~---~h~~i~~~~~~~~~~ 93 (326)
T 2x7f_A 18 ALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTG-DEEEEIKQEINMLKKYS---HHRNIATYYGAFIKK 93 (326)
T ss_dssp CCCCCTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCS-STTHHHHHHHHHHHHHC---CSTTBCCEEEEEEEC
T ss_pred hccCCCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecCc-ccHHHHHHHHHHHHhcc---CCCCeeeeeeEEeec
Confidence 33445788999999999999999999975 78999999987543 34567889999988632 79999999999986
Q ss_pred -----CCeEEEEEEecCCCCHHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEE
Q 001384 877 -----GSEKILVYEYMEGGSLEDIISDR--TRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALV 949 (1088)
Q Consensus 877 -----~~~~~lv~e~~~~gsL~~~l~~~--~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl 949 (1088)
....++||||+++|+|.+++... ..+++..++.++.|++.||+|||+. +|+||||||+||+++.++.+||
T Consensus 94 ~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~NIl~~~~~~~kl 170 (326)
T 2x7f_A 94 NPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQH---KVIHRDIKGQNVLLTENAEVKL 170 (326)
T ss_dssp C--CCCCEEEEEEECCTTEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTCCEEE
T ss_pred cCccccceEEEEEEcCCCCcHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCcHHHEEEcCCCCEEE
Confidence 46789999999999999999764 4699999999999999999999999 9999999999999999999999
Q ss_pred eecccceeecCCCCcccccccccccccCccccC-----CCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhh
Q 001384 950 TDFGLARVVSAGDSHVSTTIAGTVGYVAPEYGQ-----TWQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVM 1024 (1088)
Q Consensus 950 ~Dfg~a~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~ 1024 (1088)
+|||++....... .......|+..|+|||++. ...++.++||||||+++|+|++|+.||.+.......+.....
T Consensus 171 ~Dfg~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~ 249 (326)
T 2x7f_A 171 VDFGVSAQLDRTV-GRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHPMRALFLIPRN 249 (326)
T ss_dssp CCCTTTC--------------CCGGGCCHHHHC--------CCTTHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHS
T ss_pred eeCcCceecCcCc-cccccccCCccccChhhhccccccCcCCCccchHHHHHHHHHHHHhCCCCCCCCcHHHHHHHhhcC
Confidence 9999998654321 1233457899999999876 567899999999999999999999999876542222211111
Q ss_pred ccCCCCCCccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1025 GYGRHGPGRAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1025 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
.. ... ........+.+++.+|++.||.+||+++|+++
T Consensus 250 --~~----~~~-----------~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~ 286 (326)
T 2x7f_A 250 --PA----PRL-----------KSKKWSKKFQSFIESCLVKNHSQRPATEQLMK 286 (326)
T ss_dssp --CC----CCC-----------SCSCSCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred --cc----ccC-----------CccccCHHHHHHHHHHhccChhhCCCHHHHhh
Confidence 00 000 01122357888999999999999999999986
No 249
>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=4.5e-36 Score=346.85 Aligned_cols=262 Identities=22% Similarity=0.272 Sum_probs=194.3
Q ss_pred HHcCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecC---
Q 001384 802 KATGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGLEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDG--- 877 (1088)
Q Consensus 802 ~~~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~--- 877 (1088)
...++|++.+.||+|+||+||+|++. +|+.||||++...... ..+|+++++. ++||||+++++++...
T Consensus 4 ~~~~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~~~----~~~E~~il~~----l~hpnIv~l~~~~~~~~~~ 75 (383)
T 3eb0_A 4 TSSKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDPRY----KNRELDIMKV----LDHVNIIKLVDYFYTTGDE 75 (383)
T ss_dssp --CTTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECCTTS----CCHHHHHHTT----CCCTTBCCEEEEEEEC---
T ss_pred cccceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecCcch----HHHHHHHHHH----cCCCCccchhheeeecCcc
Confidence 45678999999999999999999974 7899999998765322 2468899886 6899999999998543
Q ss_pred -----------------------------------CeEEEEEEecCCCCHHHHHh----hcCCCCHHHHHHHHHHHHHHH
Q 001384 878 -----------------------------------SEKILVYEYMEGGSLEDIIS----DRTRLTWRRRLDIAIDVARAL 918 (1088)
Q Consensus 878 -----------------------------------~~~~lv~e~~~~gsL~~~l~----~~~~l~~~~~~~i~~qi~~~L 918 (1088)
...++||||+++ +|.+.+. ....+++..++.++.|++.||
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~-~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL 154 (383)
T 3eb0_A 76 EPKPPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVPD-TLHKVLKSFIRSGRSIPMNLISIYIYQLFRAV 154 (383)
T ss_dssp ----------------------------------CCEEEEEECCCSE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccCCCceEEEEEEecCCc-cHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 347899999985 8777664 356799999999999999999
Q ss_pred HHHHhcCCCCeEecCCCCCCEEEc-CCCCEEEeecccceeecCCCCcccccccccccccCccccCCC-CCCcchhHHHHH
Q 001384 919 VFLHHECYPPIVHRDVKASNVLLD-KEGKALVTDFGLARVVSAGDSHVSTTIAGTVGYVAPEYGQTW-QATTKGDVYSFG 996 (1088)
Q Consensus 919 ~yLH~~~~~~ivH~DLkp~NIll~-~~~~~kl~Dfg~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DvwslG 996 (1088)
+|||++ +|+||||||+||+++ .++.+||+|||+++...... ......+|..|+|||.+.+. .++.++||||+|
T Consensus 155 ~~LH~~---gi~H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~--~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG 229 (383)
T 3eb0_A 155 GFIHSL---GICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPSE--PSVAYICSRFYRAPELMLGATEYTPSIDLWSIG 229 (383)
T ss_dssp HHHHTT---TEECSCCCGGGEEEETTTTEEEECCCTTCEECCTTS--CCCCCCCCSSCCCHHHHTTCSSCCTHHHHHHHH
T ss_pred HHHHHC---cCccCccCHHHEEEcCCCCcEEEEECCCCcccCCCC--CCcCcccCCCccCHHHhcCCCCCCcchhhhhHH
Confidence 999999 999999999999998 68899999999998765432 23445789999999987664 589999999999
Q ss_pred HHHHHHHhCCcCCCCCchh--HHHHHHhhhccCC--------CCCCccccchhhcC-CCccccHHHHHHHHHHHhhhccc
Q 001384 997 VLAMELATGRRALEGGEEC--LVEWGRRVMGYGR--------HGPGRAVIPVVLLG-SGLAEGAEEMSELLRIGVRCTAE 1065 (1088)
Q Consensus 997 ~~l~elltg~~p~~~~~~~--~~~~~~~~~~~~~--------~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~li~~cl~~ 1065 (1088)
|++|||++|+.||.+.... ....... ..... ........+..... .....+...+.++.+++.+|++.
T Consensus 230 ~il~ell~g~~pf~~~~~~~~~~~i~~~-~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~ 308 (383)
T 3eb0_A 230 CVFGELILGKPLFSGETSIDQLVRIIQI-MGTPTKEQMIRMNPHYTEVRFPTLKAKDWRKILPEGTPSLAIDLLEQILRY 308 (383)
T ss_dssp HHHHHHHHSSCSSCCSSHHHHHHHHHHH-HCCCCHHHHHHHCTTC--CCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCS
T ss_pred HHHHHHHhCCCCCCCCChHHHHHHHHHH-hCCCCHHHHHHhCcccccccCCccCcccHHhhCCCCCCHHHHHHHHHHccC
Confidence 9999999999999876441 1111110 00000 00000000000000 00001222345688999999999
Q ss_pred CCCCCCCHHHHHH
Q 001384 1066 APNARPNVKEVLA 1078 (1088)
Q Consensus 1066 dP~~RPs~~eil~ 1078 (1088)
||++|||+.|+++
T Consensus 309 dP~~R~t~~e~l~ 321 (383)
T 3eb0_A 309 EPDLRINPYEAMA 321 (383)
T ss_dssp SGGGSCCHHHHHT
T ss_pred ChhhCCCHHHHhc
Confidence 9999999999974
No 250
>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*
Probab=100.00 E-value=3.6e-36 Score=345.33 Aligned_cols=274 Identities=22% Similarity=0.269 Sum_probs=199.4
Q ss_pred cCHHHHHHHcCCCCccceecccCceEEEEEEeCCCcEEEEEEccccCccc-----------hHHHHHHHHHHhCCCCCCC
Q 001384 795 FTYSDILKATGKFSEDRIIGKGGFGTVYRGVLPDGREVAVKKLQREGLEG-----------EREFRAEMEVLSGNGFGWP 863 (1088)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~LG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~-----------~~~~~~E~~~l~~~~~~l~ 863 (1088)
....++....++|++.+.||+|+||.||+|.+.+|+.||||++....... .+.+.+|++++.+ ++
T Consensus 12 ~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~----l~ 87 (362)
T 3pg1_A 12 DLIAELHAMQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNH----FH 87 (362)
T ss_dssp HHHHHHHHTTCSCEEEEEEEEETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHH----CC
T ss_pred HHHHHHHHhccceEEeEEeccCCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHh----CC
Confidence 34567778899999999999999999999998889999999997543221 2678999999997 67
Q ss_pred CCceeEEeeEEec-----CCeEEEEEEecCCCCHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCC
Q 001384 864 HPNLVTLYGWCLD-----GSEKILVYEYMEGGSLEDIISDR-TRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKAS 937 (1088)
Q Consensus 864 h~niv~l~~~~~~-----~~~~~lv~e~~~~gsL~~~l~~~-~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~ 937 (1088)
||||+++++++.. ....++||||++ |+|.+++... ..+++.+++.++.|++.||+|||++ +|+||||||+
T Consensus 88 h~~iv~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~ 163 (362)
T 3pg1_A 88 HPNILGLRDIFVHFEEPAMHKLYLVTELMR-TDLAQVIHDQRIVISPQHIQYFMYHILLGLHVLHEA---GVVHRDLHPG 163 (362)
T ss_dssp CTTBCCCSEEEEECCTTTCCEEEEEEECCS-EEHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGG
T ss_pred CcCccceeeeEEeccCCCcceEEEEEccCC-CCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHC---cCEecCCChH
Confidence 9999999999853 346899999998 5888887654 3699999999999999999999999 9999999999
Q ss_pred CEEEcCCCCEEEeecccceeecCCCCcccccccccccccCccccCC-CCCCcchhHHHHHHHHHHHHhCCcCCCCCchhH
Q 001384 938 NVLLDKEGKALVTDFGLARVVSAGDSHVSTTIAGTVGYVAPEYGQT-WQATTKGDVYSFGVLAMELATGRRALEGGEECL 1016 (1088)
Q Consensus 938 NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~ 1016 (1088)
||+++.++.+||+|||+++..... .......+|+.|+|||++.+ ..++.++||||+||++|+|++|+.||.+.....
T Consensus 164 NIl~~~~~~~kl~Dfg~~~~~~~~--~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~ 241 (362)
T 3pg1_A 164 NILLADNNDITICDFNLAREDTAD--ANKTHYVTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRKALFRGSTFYN 241 (362)
T ss_dssp GEEECTTCCEEECCTTC-----------------CGGGCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH
T ss_pred HEEEcCCCCEEEEecCcccccccc--cccceecccceecCcHHhcCCCCCCcHhHHHhHHHHHHHHHhCCCCCCCCCHHH
Confidence 999999999999999999754322 22344578999999998766 679999999999999999999999998764311
Q ss_pred H-HHHHhhhccCCCC--------CCccccchhhcC----CCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1017 V-EWGRRVMGYGRHG--------PGRAVIPVVLLG----SGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1017 ~-~~~~~~~~~~~~~--------~~~~~~~~~~~~----~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
. ............. ............ ............+.+++.+|++.||++||++.|+++
T Consensus 242 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 316 (362)
T 3pg1_A 242 QLNKIVEVVGTPKIEDVVMFSSPSARDYLRNSLSNVPARAWTAVVPTADPVALDLIAKMLEFNPQRRISTEQALR 316 (362)
T ss_dssp HHHHHHHHHCCCCHHHHHHTSCHHHHHHTTTCCCCCCCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred HHHHHHHHcCCCChHHhhhccchhhhHHHHhhcccCChhhHHhhCCCCCHHHHHHHHHHhcCChhhCCCHHHHHc
Confidence 1 1100000000000 000000000000 000001122456889999999999999999999985
No 251
>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*
Probab=100.00 E-value=6.6e-36 Score=349.82 Aligned_cols=202 Identities=24% Similarity=0.288 Sum_probs=173.7
Q ss_pred cCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCccchHHHHHHHHHHhCCC--CCCCCCceeEEeeEEecCCeE
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGLEGEREFRAEMEVLSGNG--FGWPHPNLVTLYGWCLDGSEK 880 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~--~~l~h~niv~l~~~~~~~~~~ 880 (1088)
..+|++.+.||+|+||+||+|.+. +++.||||++... .....++.+|++++..+. ....|+||+++++++......
T Consensus 96 ~~ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~~ 174 (429)
T 3kvw_A 96 AYRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNE-KRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRNHI 174 (429)
T ss_dssp TTTEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEETTEE
T ss_pred cCcEEEEEEcccCccEEEEEEEECCCCcEEEEEEECCc-cchHHHHHHHHHHHHHHhhccccCCcCEEEEEeecccCCeE
Confidence 457999999999999999999976 5889999999764 223356677777766532 124789999999999999999
Q ss_pred EEEEEecCCCCHHHHHhhcC--CCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCC--EEEeecccce
Q 001384 881 ILVYEYMEGGSLEDIISDRT--RLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGK--ALVTDFGLAR 956 (1088)
Q Consensus 881 ~lv~e~~~~gsL~~~l~~~~--~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~--~kl~Dfg~a~ 956 (1088)
++||||++ ++|.+++.... .+++..++.++.||+.||+|||++ +||||||||+||+++.++. +||+|||+++
T Consensus 175 ~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlKp~NILl~~~~~~~vkL~DFG~a~ 250 (429)
T 3kvw_A 175 CMTFELLS-MNLYELIKKNKFQGFSLPLVRKFAHSILQCLDALHKN---RIIHCDLKPENILLKQQGRSGIKVIDFGSSC 250 (429)
T ss_dssp EEEECCCC-CBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHH---TEECSCCSGGGEEESSTTSCCEEECCCTTCE
T ss_pred EEEEeccC-CCHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEEccCCCcceEEeecccce
Confidence 99999996 59999997654 499999999999999999999999 9999999999999999987 9999999997
Q ss_pred eecCCCCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCch
Q 001384 957 VVSAGDSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEE 1014 (1088)
Q Consensus 957 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~ 1014 (1088)
.... ......||+.|+|||++.+..++.++|||||||++|||++|+.||.+..+
T Consensus 251 ~~~~----~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~pf~~~~~ 304 (429)
T 3kvw_A 251 YEHQ----RVYTYIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTGYPLLPGEDE 304 (429)
T ss_dssp ETTC----CCCSSCSCGGGCCHHHHHTBCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH
T ss_pred ecCC----cccccCCCCCccChHHHhCCCCCchHHHHhHHHHHHHHHhCCCCCCCCCH
Confidence 6432 22345789999999999998999999999999999999999999987654
No 252
>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*
Probab=100.00 E-value=1.6e-35 Score=328.22 Aligned_cols=256 Identities=26% Similarity=0.330 Sum_probs=207.2
Q ss_pred HcCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccC--ccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCe
Q 001384 803 ATGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREG--LEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSE 879 (1088)
Q Consensus 803 ~~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~ 879 (1088)
..++|++.+.||+|+||.||+|++. +++.||||++.... ......+.+|++++++ ++||||+++++++.+...
T Consensus 20 ~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~----l~h~~i~~~~~~~~~~~~ 95 (287)
T 2wei_A 20 FAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKK----LDHPNIMKLFEILEDSSS 95 (287)
T ss_dssp HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHT----CCCTTBCCEEEEEECSSE
T ss_pred HhhcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHHHh----ccCCCccEEEEEEeCCCe
Confidence 3468999999999999999999986 68999999987543 2345678899999997 679999999999999999
Q ss_pred EEEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCC---CCEEEeecccce
Q 001384 880 KILVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKE---GKALVTDFGLAR 956 (1088)
Q Consensus 880 ~~lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~---~~~kl~Dfg~a~ 956 (1088)
.++||||+++++|.+++.....+++.+++.++.|++.||+|||++ +|+||||||+||+++.+ +.+||+|||++.
T Consensus 96 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dl~p~NIlv~~~~~~~~~kL~Dfg~~~ 172 (287)
T 2wei_A 96 FYIVGELYTGGELFDEIIKRKRFSEHDAARIIKQVFSGITYMHKH---NIVHRDLKPENILLESKEKDCDIKIIDFGLST 172 (287)
T ss_dssp EEEEECCCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESCSSTTCCEEECSTTGGG
T ss_pred EEEEEEccCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCChhhEEEecCCCcccEEEeccCcce
Confidence 999999999999999998888899999999999999999999999 99999999999999754 479999999997
Q ss_pred eecCCCCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCCCCCcccc
Q 001384 957 VVSAGDSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRHGPGRAVI 1036 (1088)
Q Consensus 957 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1036 (1088)
...... ......+++.|+|||.+.+ .++.++||||+|+++|+|++|+.||.+..... .............
T Consensus 173 ~~~~~~--~~~~~~~~~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~--~~~~~~~~~~~~~----- 242 (287)
T 2wei_A 173 CFQQNT--KMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGKNEYD--ILKRVETGKYAFD----- 242 (287)
T ss_dssp TBCCCS--SCSCHHHHHTTCCHHHHTT-CCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH--HHHHHHHCCCCCC-----
T ss_pred eecCCC--ccccccCcccccChHHhcC-CCCCchhhHhHHHHHHHHHhCCCCCCCCCHHH--HHHHHHcCCCCCC-----
Confidence 654322 2233468899999998876 58999999999999999999999998765421 1111111000000
Q ss_pred chhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH--HHHhh
Q 001384 1037 PVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA--MLIKI 1083 (1088)
Q Consensus 1037 ~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~--~L~~i 1083 (1088)
.+.......++.+++.+|++.||++||+++|+++ .+++.
T Consensus 243 --------~~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~hp~~~~~ 283 (287)
T 2wei_A 243 --------LPQWRTISDDAKDLIRKMLTFHPSLRITATQCLEHPWIQKY 283 (287)
T ss_dssp --------SGGGTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHSHHHHHH
T ss_pred --------chhhhhcCHHHHHHHHHHcccChhhCcCHHHHhcCHHHhcc
Confidence 0001123457888999999999999999999987 45544
No 253
>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}
Probab=100.00 E-value=4.3e-36 Score=338.26 Aligned_cols=258 Identities=24% Similarity=0.378 Sum_probs=200.9
Q ss_pred HHcCCCCccceecccCceEEEEEEeCCCcEEEEEEccccCc--cchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCe
Q 001384 802 KATGKFSEDRIIGKGGFGTVYRGVLPDGREVAVKKLQREGL--EGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSE 879 (1088)
Q Consensus 802 ~~~~~~~~~~~LG~G~~g~Vy~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~ 879 (1088)
...++|++.+.||+|+||.||+|+++. .||+|++..... ...+.+.+|+.++++ ++||||+++++++.++..
T Consensus 30 i~~~~~~~~~~lg~G~~g~V~~~~~~~--~~avk~~~~~~~~~~~~~~~~~e~~~l~~----l~h~~iv~~~~~~~~~~~ 103 (319)
T 2y4i_B 30 IPFEQLEIGELIGKGRFGQVYHGRWHG--EVAIRLIDIERDNEDQLKAFKREVMAYRQ----TRHENVVLFMGACMSPPH 103 (319)
T ss_dssp SCCSCEECCCBCCCSSSSEEEEEEESS--SEEEEECCCCSCCCCCCCCCCTTGGGGTT----CCCTTBCCCCEEEECSSC
T ss_pred CCHHHeEEeeEeccCCceEEEEEEEcC--eEEEEEeecCCCCHHHHHHHHHHHHHHhc----CCCCCEeEEEEEEecCCc
Confidence 345789999999999999999999853 599999975432 223457788888876 679999999999999999
Q ss_pred EEEEEEecCCCCHHHHHhhcC-CCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccceee
Q 001384 880 KILVYEYMEGGSLEDIISDRT-RLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARVV 958 (1088)
Q Consensus 880 ~~lv~e~~~~gsL~~~l~~~~-~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~ 958 (1088)
.++||||+++++|.+++.... .+++.+++.++.|++.||+|||++ +|+||||||+||+++ ++.+||+|||+++..
T Consensus 104 ~~iv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~---~i~H~dlkp~NIl~~-~~~~~l~Dfg~~~~~ 179 (319)
T 2y4i_B 104 LAIITSLCKGRTLYSVVRDAKIVLDVNKTRQIAQEIVKGMGYLHAK---GILHKDLKSKNVFYD-NGKVVITDFGLFSIS 179 (319)
T ss_dssp EEEECBCCCSEEHHHHTTSSCCCCCSHHHHHHHHHHHHHHHHHHHT---TCCCCCCCSTTEEEC---CCEECCCSCCC--
T ss_pred eEEEeecccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC---CccccCCChhhEEEe-CCCEEEeecCCcccc
Confidence 999999999999999998755 699999999999999999999999 999999999999998 789999999998765
Q ss_pred cCCC----CcccccccccccccCccccCC---------CCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhc
Q 001384 959 SAGD----SHVSTTIAGTVGYVAPEYGQT---------WQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMG 1025 (1088)
Q Consensus 959 ~~~~----~~~~~~~~gt~~y~aPE~~~~---------~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~ 1025 (1088)
.... ........|++.|+|||++.. ..++.++||||||+++|||++|+.||.........+.....
T Consensus 180 ~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~- 258 (319)
T 2y4i_B 180 GVLQAGRREDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFKTQPAEAIIWQMGTG- 258 (319)
T ss_dssp --------CCSCBCCSGGGGTSCHHHHSCBSCC--CCCSCCCHHHHHHHHHHHHHHHHHSSCSSSSCCHHHHHHHHHTT-
T ss_pred ccccccccccccccCCCcccccChHHhhhccccccccccCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHhccC-
Confidence 3211 112234568999999998764 45789999999999999999999999876543322221111
Q ss_pred cCCCCCCccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhhCCC
Q 001384 1026 YGRHGPGRAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKILPH 1086 (1088)
Q Consensus 1026 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i~~~ 1086 (1088)
.. .. .. ....+.++.+++.+|++.||++||+++|+++.|+++.+.
T Consensus 259 -~~-~~----~~----------~~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~l~~~ 303 (319)
T 2y4i_B 259 -MK-PN----LS----------QIGMGKEISDILLFCWAFEQEERPTFTKLMDMLEKLPKR 303 (319)
T ss_dssp -CC-CC----CC----------CSSCCTTHHHHHHHHHCSSTTTSCCHHHHHHHHTTC---
T ss_pred -CC-CC----CC----------cCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHh
Confidence 00 00 00 001224578899999999999999999999999998754
No 254
>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...
Probab=100.00 E-value=8.2e-36 Score=342.24 Aligned_cols=266 Identities=22% Similarity=0.288 Sum_probs=200.3
Q ss_pred cCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCcc-chHHHHHHHHHHhCCCCCCCCCceeEEeeEEecC----
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGLE-GEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDG---- 877 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~-~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~---- 877 (1088)
.++|++.+.||+|+||.||+|++. +++.||||++...... ..+.+.+|++++.+ ++||||+++++++...
T Consensus 26 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~----l~h~niv~~~~~~~~~~~~~ 101 (364)
T 3qyz_A 26 GPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLR----FRHENIIGINDIIRAPTIEQ 101 (364)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHHHHHHH----CCCTTBCCCCEEECCSSTTT
T ss_pred cccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEeccccCcHHHHHHHHHHHHHHh----cCCCCCccceeEEecCCccc
Confidence 468999999999999999999976 6889999999754322 33678899999987 6799999999998754
Q ss_pred -CeEEEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccce
Q 001384 878 -SEKILVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLAR 956 (1088)
Q Consensus 878 -~~~~lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~ 956 (1088)
...++||||+++ +|.++++.. .+++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++
T Consensus 102 ~~~~~iv~e~~~~-~L~~~l~~~-~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~ 176 (364)
T 3qyz_A 102 MKDVYIVQDLMET-DLYKLLKTQ-HLSNDHICYFLYQILRGLKYIHSA---NVLHRDLKPSNLLLNTTCDLKICDFGLAR 176 (364)
T ss_dssp CCCEEEEEECCSE-EHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCE
T ss_pred cceEEEEEcccCc-CHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCChHhEEECCCCCEEEEeCcceE
Confidence 468999999975 999999764 599999999999999999999999 99999999999999999999999999998
Q ss_pred eecCCCCc--ccccccccccccCccccC-CCCCCcchhHHHHHHHHHHHHhCCcCCCCCchh-HHHHHHhhhccCCCCCC
Q 001384 957 VVSAGDSH--VSTTIAGTVGYVAPEYGQ-TWQATTKGDVYSFGVLAMELATGRRALEGGEEC-LVEWGRRVMGYGRHGPG 1032 (1088)
Q Consensus 957 ~~~~~~~~--~~~~~~gt~~y~aPE~~~-~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~-~~~~~~~~~~~~~~~~~ 1032 (1088)
........ ......||+.|+|||++. ...++.++||||+||++|+|++|+.||.+.... .................
T Consensus 177 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~ 256 (364)
T 3qyz_A 177 VADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDL 256 (364)
T ss_dssp ECCGGGCBCCTTCCCCSCGGGCCHHHHHTBCSCSTHHHHHHHHHHHHHHHHSSCSSCCSSGGGHHHHHHHHHCSCCHHHH
T ss_pred ecCCCCCccccccccccccCCCCCHHhcCCCCCCcchhHHHHHHHHHHHHHCCCCCCCCChHHHHHHHHHHhCCCCHHHH
Confidence 76533221 124457999999999754 456899999999999999999999999876431 11111111100000000
Q ss_pred cccc--------chhhcCCCc---cccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1033 RAVI--------PVVLLGSGL---AEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1033 ~~~~--------~~~~~~~~~---~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
.... ......... ........++.+++.+|++.||++||+++|+++
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 313 (364)
T 3qyz_A 257 NCIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALA 313 (364)
T ss_dssp HTCCCHHHHHHHHTSCCCCCCCHHHHCTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred HHhhhhhHHHHHHhcCCccCCCHHHhCCCCCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence 0000 000000000 001122356889999999999999999999985
No 255
>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}
Probab=100.00 E-value=1e-35 Score=344.65 Aligned_cols=260 Identities=25% Similarity=0.310 Sum_probs=192.7
Q ss_pred cCCCCccceecccCceEEEEEEeCCCcEEEEEEccccCccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCC-----
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLPDGREVAVKKLQREGLEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGS----- 878 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~----- 878 (1088)
..+|++.+.||+|+||+||+|++..+..||+|++...... ..+|+++++. ++||||+++++++....
T Consensus 39 ~~~Y~~~~~lG~G~~g~V~~a~~~~~~~~aikk~~~~~~~----~~~E~~il~~----l~h~niv~l~~~~~~~~~~~~~ 110 (394)
T 4e7w_A 39 EIAYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQDKRF----KNRELQIMRI----VKHPNVVDLKAFFYSNGDKKDE 110 (394)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEETTTEEEEEEEEECCTTS----CCHHHHHHHT----CCCTTBCCEEEEEEEESSSSSC
T ss_pred cceEEEeEEEeeCCCeEEEEEEECCCCeEEEEEEecCcch----HHHHHHHHHh----CCCCCcceEEEEEEecCCCCCc
Confidence 3468999999999999999999987777999988754322 2368888886 67999999999986543
Q ss_pred -eEEEEEEecCCCCHHHHH----hhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEc-CCCCEEEeec
Q 001384 879 -EKILVYEYMEGGSLEDII----SDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLD-KEGKALVTDF 952 (1088)
Q Consensus 879 -~~~lv~e~~~~gsL~~~l----~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~-~~~~~kl~Df 952 (1088)
..++||||++++ +.+.+ .....+++..++.++.|++.||+|||++ +|+||||||+||+++ .++.+||+||
T Consensus 111 ~~~~lv~e~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~Nill~~~~~~~kL~DF 186 (394)
T 4e7w_A 111 VFLNLVLEYVPET-VYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIHSI---GICHRDIKPQNLLLDPPSGVLKLIDF 186 (394)
T ss_dssp EEEEEEEECCSEE-HHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEETTTTEEEECCC
T ss_pred eEEEEEeeccCcc-HHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCCHHHEEEcCCCCcEEEeeC
Confidence 378999999874 44333 2356799999999999999999999999 999999999999999 7999999999
Q ss_pred ccceeecCCCCcccccccccccccCccccCC-CCCCcchhHHHHHHHHHHHHhCCcCCCCCchh--HHHHHHhhhccCCC
Q 001384 953 GLARVVSAGDSHVSTTIAGTVGYVAPEYGQT-WQATTKGDVYSFGVLAMELATGRRALEGGEEC--LVEWGRRVMGYGRH 1029 (1088)
Q Consensus 953 g~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwslG~~l~elltg~~p~~~~~~~--~~~~~~~~~~~~~~ 1029 (1088)
|+++...... ......+|+.|+|||++.+ ..++.++||||+||++|||++|+.||.+.... ......... ....
T Consensus 187 G~a~~~~~~~--~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~l~~i~~~~g-~p~~ 263 (394)
T 4e7w_A 187 GSAKILIAGE--PNVSYICSRYYRAPELIFGATNYTTNIDIWSTGCVMAELMQGQPLFPGESGIDQLVEIIKVLG-TPSR 263 (394)
T ss_dssp TTCEECCTTC--CCCSSCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHC-CCCH
T ss_pred CCcccccCCC--CCcccccCcCccCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhC-CCCH
Confidence 9998765432 2334578999999998765 46899999999999999999999999876431 111111100 0000
Q ss_pred --------CCCccccchhhcCC-CccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1030 --------GPGRAVIPVVLLGS-GLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1030 --------~~~~~~~~~~~~~~-~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
.......+...... ..........++.+++.+|++.||++||++.|+++
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 321 (394)
T 4e7w_A 264 EQIKTMNPNYMEHKFPQIRPHPFSKVFRPRTPPDAIDLISRLLEYTPSARLTAIEALC 321 (394)
T ss_dssp HHHHHHCGGGSSSCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred HHHHhhChhhhhhccccccCCcHHHhccccCCHHHHHHHHHHhCCChhhCCCHHHHhc
Confidence 00000000000000 00001123457889999999999999999999985
No 256
>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...
Probab=100.00 E-value=1.5e-35 Score=339.38 Aligned_cols=258 Identities=25% Similarity=0.349 Sum_probs=182.7
Q ss_pred cCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccC--ccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecC---
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREG--LEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDG--- 877 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~--- 877 (1088)
.++|++.+.||+|+||.||+|.+. +|+.||||++.... ....+.+.+|+++++. ++||||+++++++...
T Consensus 28 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~----l~hpnIv~~~~~~~~~~~~ 103 (367)
T 2fst_X 28 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKH----MKHENVIGLLDVFTPARSL 103 (367)
T ss_dssp ETTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHH----CCCTTBCCCSEEECSCSSG
T ss_pred CCceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHh----CCCCCCCcEEEEEecCCcc
Confidence 478999999999999999999965 68999999997642 2234578899999987 6799999999998754
Q ss_pred ---CeEEEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeeccc
Q 001384 878 ---SEKILVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGL 954 (1088)
Q Consensus 878 ---~~~~lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~ 954 (1088)
...++||||+ +++|.++++. .++++..++.++.||+.||+|||+. +|+||||||+||+++.++.+||+|||+
T Consensus 104 ~~~~~~~lv~e~~-~~~L~~~~~~-~~l~~~~~~~i~~qi~~aL~~LH~~---givH~Dlkp~NIll~~~~~~kL~DFG~ 178 (367)
T 2fst_X 104 EEFNDVYLVTHLM-GADLNNIVKC-QKLTDDHVQFLIYQILRGLKYIHSA---DIIHRDLKPSNLAVNEDCELKILDFGL 178 (367)
T ss_dssp GGCCCCEEEEECC-CEECC------CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECC---
T ss_pred ccCCeEEEEeccc-CCCHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCHhhEEECCCCCEEEeeccc
Confidence 5679999999 6799999876 5699999999999999999999999 999999999999999999999999999
Q ss_pred ceeecCCCCcccccccccccccCccccCC-CCCCcchhHHHHHHHHHHHHhCCcCCCCCchh-HHHHHHhhhccCCCCCC
Q 001384 955 ARVVSAGDSHVSTTIAGTVGYVAPEYGQT-WQATTKGDVYSFGVLAMELATGRRALEGGEEC-LVEWGRRVMGYGRHGPG 1032 (1088)
Q Consensus 955 a~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwslG~~l~elltg~~p~~~~~~~-~~~~~~~~~~~~~~~~~ 1032 (1088)
++.... ......||..|+|||++.+ ..++.++||||+||++|||++|+.||.+.... ........... +.
T Consensus 179 a~~~~~----~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~----p~ 250 (367)
T 2fst_X 179 ARHTAD----EMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGT----PG 250 (367)
T ss_dssp ----------------CCCTTCCHHHHTTCCSCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCS----CC
T ss_pred cccccc----cCCCcCcCcCccChHHHcCCcCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCC----CC
Confidence 986542 1334678999999998776 68999999999999999999999999876541 11111111100 00
Q ss_pred ccccchh-----------hcC-CCcc---ccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1033 RAVIPVV-----------LLG-SGLA---EGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1033 ~~~~~~~-----------~~~-~~~~---~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
.+..... +.. .... ........+.+++.+|++.||++||+++|+++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~t~~e~L~ 311 (367)
T 2fst_X 251 AELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALA 311 (367)
T ss_dssp HHHHTTCCCHHHHHHHHTSCCCCCCCHHHHTTTCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred HHHHHHhhhHHHHHHHhccCCCCCCCHHHHCCCCCHHHHHHHHHhCCCCcccCcCHHHHhc
Confidence 0000000 000 0000 00112356889999999999999999999975
No 257
>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B
Probab=100.00 E-value=2e-35 Score=333.87 Aligned_cols=269 Identities=24% Similarity=0.308 Sum_probs=201.0
Q ss_pred HcCCCCccceecccCceEEEEEEeC--CCcEEEEEEccccCcc--chHHHHHHHHHHhCCCCCCCCCceeEEeeEEe---
Q 001384 803 ATGKFSEDRIIGKGGFGTVYRGVLP--DGREVAVKKLQREGLE--GEREFRAEMEVLSGNGFGWPHPNLVTLYGWCL--- 875 (1088)
Q Consensus 803 ~~~~~~~~~~LG~G~~g~Vy~~~~~--~~~~vavK~~~~~~~~--~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~--- 875 (1088)
..++|++.+.||+|+||.||+|++. +|+.||||++...... ....+.+|+.+++.+. .+.||||+++++++.
T Consensus 9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~-~~~h~~i~~~~~~~~~~~ 87 (326)
T 1blx_A 9 ADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLE-TFEHPNVVRLFDVCTVSR 87 (326)
T ss_dssp GGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHH-HTCCTTBCCEEEEEEEEE
T ss_pred chhceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhh-ccCCCCeEeeeeeeeecc
Confidence 4578999999999999999999973 6789999998754321 2234566776665421 147999999999987
Q ss_pred --cCCeEEEEEEecCCCCHHHHHhhcC--CCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEee
Q 001384 876 --DGSEKILVYEYMEGGSLEDIISDRT--RLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTD 951 (1088)
Q Consensus 876 --~~~~~~lv~e~~~~gsL~~~l~~~~--~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~D 951 (1088)
.....++||||++ |+|.+++.... .+++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|
T Consensus 88 ~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---gi~H~dlkp~Nili~~~~~~kl~D 163 (326)
T 1blx_A 88 TDRETKLTLVFEHVD-QDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSH---RVVHRDLKPQNILVTSSGQIKLAD 163 (326)
T ss_dssp CSSEEEEEEEEECCS-CBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECS
T ss_pred cCCCceEEEEEecCC-CCHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCCHHHeEEcCCCCEEEec
Confidence 5567899999998 59999997654 499999999999999999999999 999999999999999999999999
Q ss_pred cccceeecCCCCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhH-HHHHHhhhccCC--
Q 001384 952 FGLARVVSAGDSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEECL-VEWGRRVMGYGR-- 1028 (1088)
Q Consensus 952 fg~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~-~~~~~~~~~~~~-- 1028 (1088)
||.++..... .......+|..|+|||++.+..++.++||||+|+++|+|++|+.||.+..... ............
T Consensus 164 fg~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~ 241 (326)
T 1blx_A 164 FGLARIYSFQ--MALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEE 241 (326)
T ss_dssp CCSCCCCCGG--GGGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCGG
T ss_pred CcccccccCC--CCccccccccceeCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHcCCCCcc
Confidence 9999765422 22344678999999999998899999999999999999999999998765421 111111110000
Q ss_pred CCCCc-----cccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1029 HGPGR-----AVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1029 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
..... .....................+.+++.+|++.||++||++.|+++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 296 (326)
T 1blx_A 242 DWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALS 296 (326)
T ss_dssp GSCTTCSSCGGGSCCCCCCCGGGTCCSCCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred cCccccccchhhhcccCcchhhhccccCCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence 00000 000000000000011223467888999999999999999999984
No 258
>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*
Probab=100.00 E-value=2.6e-35 Score=330.80 Aligned_cols=253 Identities=21% Similarity=0.286 Sum_probs=197.4
Q ss_pred HcCCCCccceecccCceEEEEEEeCCCcEEEEEEccccCcc--chHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeE
Q 001384 803 ATGKFSEDRIIGKGGFGTVYRGVLPDGREVAVKKLQREGLE--GEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEK 880 (1088)
Q Consensus 803 ~~~~~~~~~~LG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~--~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~ 880 (1088)
..++|++.+.||+|+||.||+|.+.+++.||||++...... ....+.+|++++.++. -.||||+++++++.++...
T Consensus 26 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~--~~~~~iv~~~~~~~~~~~~ 103 (313)
T 3cek_A 26 KGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQ--QHSDKIIRLYDYEITDQYI 103 (313)
T ss_dssp TTEEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHG--GGCTTBCCEEEEEECSSEE
T ss_pred ccceEEEEEEecCCCCEEEEEEEcCCCcEEEEEEeccccccccchHHHHHHHHHHHhcc--ccCCceEEEEEEeecCCEE
Confidence 34679999999999999999999988999999999754322 3457889999988743 1369999999999999999
Q ss_pred EEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccceeecC
Q 001384 881 ILVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARVVSA 960 (1088)
Q Consensus 881 ~lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~~~ 960 (1088)
++||| +.+++|.+++.....+++.+++.++.|++.||+|||++ +|+||||||+||+++ ++.+||+|||+++....
T Consensus 104 ~lv~e-~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIl~~-~~~~kL~Dfg~~~~~~~ 178 (313)
T 3cek_A 104 YMVME-CGNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQH---GIVHSDLKPANFLIV-DGMLKLIDFGIANQMQP 178 (313)
T ss_dssp EEEEC-CCSEEHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEE-TTEEEECCCSSSCC---
T ss_pred EEEEe-cCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCcccEEEE-CCeEEEeeccccccccC
Confidence 99999 55789999999888999999999999999999999999 999999999999996 58999999999987653
Q ss_pred CCCc-ccccccccccccCccccCC-----------CCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCC
Q 001384 961 GDSH-VSTTIAGTVGYVAPEYGQT-----------WQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGR 1028 (1088)
Q Consensus 961 ~~~~-~~~~~~gt~~y~aPE~~~~-----------~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~ 1028 (1088)
.... ......|++.|+|||.+.+ ..++.++||||||+++|||++|+.||............... ...
T Consensus 179 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~-~~~ 257 (313)
T 3cek_A 179 DTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIID-PNH 257 (313)
T ss_dssp -----------CCGGGCCHHHHTTCC----------CCCHHHHHHHHHHHHHHHHHSSCTTTTCCSHHHHHHHHHC-TTS
T ss_pred ccccccccCCCCCCCcCCHHHHhhcccccccccccccCCchHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHh-ccc
Confidence 3221 2234578999999998765 47889999999999999999999999875443222222111 000
Q ss_pred CCCCccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1029 HGPGRAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1029 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
... .+.....++.+++.+|++.||++||+++|+++
T Consensus 258 ----~~~-----------~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~ 292 (313)
T 3cek_A 258 ----EIE-----------FPDIPEKDLQDVLKCCLKRDPKQRISIPELLA 292 (313)
T ss_dssp ----CCC-----------CCCCSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred ----ccC-----------CcccchHHHHHHHHHHccCCcccCcCHHHHhc
Confidence 000 01112356888999999999999999999986
No 259
>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*
Probab=100.00 E-value=4.6e-35 Score=332.74 Aligned_cols=266 Identities=22% Similarity=0.284 Sum_probs=202.6
Q ss_pred cCCCCccceecccCceEEEEEEe-C-CCcEEEEEEccccCccchHHHHHHHHHHhCCCC--CCCCCceeEEeeEEecCCe
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVL-P-DGREVAVKKLQREGLEGEREFRAEMEVLSGNGF--GWPHPNLVTLYGWCLDGSE 879 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~-~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~--~l~h~niv~l~~~~~~~~~ 879 (1088)
.++|++.+.||+|+||.||+|.+ + +++.||||++... ....+.+.+|++++..+.. ...|++++++++++...+.
T Consensus 13 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~~~~ 91 (339)
T 1z57_A 13 SARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNV-DRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHGH 91 (339)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSS-HHHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEETTE
T ss_pred cCceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecC-CchhHHHHHHHHHHHHhhhcCCCCceeeEeeecccccCCc
Confidence 46899999999999999999997 3 6889999999754 2334567788887765321 1345569999999999999
Q ss_pred EEEEEEecCCCCHHHHHhhcC--CCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcC--------------
Q 001384 880 KILVYEYMEGGSLEDIISDRT--RLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDK-------------- 943 (1088)
Q Consensus 880 ~~lv~e~~~~gsL~~~l~~~~--~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~-------------- 943 (1088)
.++||||+ +++|.+++.... ++++.+++.++.|++.||+|||++ +|+||||||+||+++.
T Consensus 92 ~~lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~~~~~~~~ 167 (339)
T 1z57_A 92 ICIVFELL-GLSTYDFIKENGFLPFRLDHIRKMAYQICKSVNFLHSN---KLTHTDLKPENILFVQSDYTEAYNPKIKRD 167 (339)
T ss_dssp EEEEEECC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESCCCEEEEEC----CE
T ss_pred EEEEEcCC-CCCHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHC---CCcCCCCCHHHEEEeccccccccCCccccc
Confidence 99999999 889999998765 689999999999999999999999 9999999999999987
Q ss_pred -----CCCEEEeecccceeecCCCCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHH-
Q 001384 944 -----EGKALVTDFGLARVVSAGDSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEECLV- 1017 (1088)
Q Consensus 944 -----~~~~kl~Dfg~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~- 1017 (1088)
++.+||+|||.++..... .....||+.|+|||++.+..++.++||||+|+++|||++|+.||........
T Consensus 168 ~~~~~~~~~kl~Dfg~~~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~ 243 (339)
T 1z57_A 168 ERTLINPDIKVVDFGSATYDDEH----HSTLVSTRHYRAPEVILALGWSQPCDVWSIGCILIEYYLGFTVFPTHDSKEHL 243 (339)
T ss_dssp EEEESCCCEEECCCSSCEETTSC----CCSSCSCGGGCCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSCHHHHH
T ss_pred cccccCCCceEeeCcccccCccc----cccccCCccccChHHhhCCCCCcchhhHHHHHHHHHHHhCCCCCCCCChHHHH
Confidence 678999999999864322 2345789999999999998999999999999999999999999987644211
Q ss_pred HHHHhhhc-cCC-----------------CCCCcccc----chhh--cCCCccccHHHHHHHHHHHhhhcccCCCCCCCH
Q 001384 1018 EWGRRVMG-YGR-----------------HGPGRAVI----PVVL--LGSGLAEGAEEMSELLRIGVRCTAEAPNARPNV 1073 (1088)
Q Consensus 1018 ~~~~~~~~-~~~-----------------~~~~~~~~----~~~~--~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~ 1073 (1088)
........ ... .+...... .... .............++.+++.+|++.||++||++
T Consensus 244 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~ 323 (339)
T 1z57_A 244 AMMERILGPLPKHMIQKTRKRKYFHHDRLDWDEHSSAGRYVSRACKPLKEFMLSQDVEHERLFDLIQKMLEYDPAKRITL 323 (339)
T ss_dssp HHHHHHHCSCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCCH
T ss_pred HHHHHHhCCCCHHHHhhccchhHHhhccccccccccccchhhhcCcchhhhcccchhhHHHHHHHHHHHhCcCcccccCH
Confidence 11111110 000 00000000 0000 000011234556789999999999999999999
Q ss_pred HHHHH
Q 001384 1074 KEVLA 1078 (1088)
Q Consensus 1074 ~eil~ 1078 (1088)
+|+++
T Consensus 324 ~ell~ 328 (339)
T 1z57_A 324 REALK 328 (339)
T ss_dssp HHHTT
T ss_pred HHHhc
Confidence 99974
No 260
>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}
Probab=100.00 E-value=4.5e-36 Score=336.95 Aligned_cols=248 Identities=27% Similarity=0.399 Sum_probs=193.2
Q ss_pred HHHHcCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCcc------chHHHHHHHHHHhCCCCCCCCCceeEEee
Q 001384 800 ILKATGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGLE------GEREFRAEMEVLSGNGFGWPHPNLVTLYG 872 (1088)
Q Consensus 800 ~~~~~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~------~~~~~~~E~~~l~~~~~~l~h~niv~l~~ 872 (1088)
.....++|++.+.||+|+||.||+|++. +++.||||++...... ....+..|++++.++....+||||+++++
T Consensus 26 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~~ 105 (312)
T 2iwi_A 26 REAFEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLD 105 (312)
T ss_dssp -------CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEEE
T ss_pred hhhhhhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEEE
Confidence 3445678999999999999999999975 6889999999765322 12234567777776432347999999999
Q ss_pred EEecCCeEEEEEEe-cCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEc-CCCCEEEe
Q 001384 873 WCLDGSEKILVYEY-MEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLD-KEGKALVT 950 (1088)
Q Consensus 873 ~~~~~~~~~lv~e~-~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~-~~~~~kl~ 950 (1088)
++...+..++|||| +.+++|.+++.....+++.+++.++.|++.||+|||+. +|+||||||+||+++ .++.+||+
T Consensus 106 ~~~~~~~~~~v~e~~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~kl~ 182 (312)
T 2iwi_A 106 WFETQEGFMLVLERPLPAQDLFDYITEKGPLGEGPSRCFFGQVVAAIQHCHSR---GVVHRDIKDENILIDLRRGCAKLI 182 (312)
T ss_dssp EC-----CEEEEECCSSEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHH---TEECCCCSGGGEEEETTTTEEEEC
T ss_pred EEecCCeEEEEEEecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCChhhEEEeCCCCeEEEE
Confidence 99999999999999 78999999999888899999999999999999999999 999999999999999 88999999
Q ss_pred ecccceeecCCCCcccccccccccccCccccCCCCC-CcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCC
Q 001384 951 DFGLARVVSAGDSHVSTTIAGTVGYVAPEYGQTWQA-TTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRH 1029 (1088)
Q Consensus 951 Dfg~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~ 1029 (1088)
|||+++..... ......|+..|+|||++.+..+ +.++||||+|+++|||++|+.||....+ ......
T Consensus 183 dfg~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~----~~~~~~----- 250 (312)
T 2iwi_A 183 DFGSGALLHDE---PYTDFDGTRVYSPPEWISRHQYHALPATVWSLGILLYDMVCGDIPFERDQE----ILEAEL----- 250 (312)
T ss_dssp CCSSCEECCSS---CBCCCCSCTTTSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHHH----HHHTCC-----
T ss_pred EcchhhhcccC---cccccCCcccccCceeeecCCCCCccchHHHHHHHHHHHHHCCCCCCChHH----Hhhhcc-----
Confidence 99999876532 2334568999999998776555 4589999999999999999999976321 111000
Q ss_pred CCCccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1030 GPGRAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1030 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
..+.....++.+++.+|++.||++||+++|+++
T Consensus 251 ----------------~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~ 283 (312)
T 2iwi_A 251 ----------------HFPAHVSPDCCALIRRCLAPKPSSRPSLEEILL 283 (312)
T ss_dssp ----------------CCCTTSCHHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred ----------------CCcccCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 001123356788999999999999999999986
No 261
>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}
Probab=100.00 E-value=1.2e-35 Score=340.76 Aligned_cols=270 Identities=23% Similarity=0.253 Sum_probs=188.1
Q ss_pred HHHHHHcCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEec
Q 001384 798 SDILKATGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGLEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLD 876 (1088)
Q Consensus 798 ~~~~~~~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~ 876 (1088)
.......++|++.+.||+|+||.||+|+++ +|+.||||++..... ......+|++.+.. ++||||+++++++..
T Consensus 16 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~~~l~~----l~h~niv~~~~~~~~ 90 (360)
T 3e3p_A 16 ERSRKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDPR-FRNRELQIMQDLAV----LHHPNIVQLQSYFYT 90 (360)
T ss_dssp HHHHHHHTTEEEC----------CEEEEETTTCCEEEEEEEECCTT-CCCHHHHHHHHHHH----HCCTTBCCEEEEEEE
T ss_pred hhchhhccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecCcc-ccHHHHHHHHHHHh----cCCCCcccHHHhhhc
Confidence 344566789999999999999999999975 689999999866532 23345566766665 579999999999875
Q ss_pred CCe-------EEEEEEecCCCCHHHHH----hhcCCCCHHHHHHHHHHHHHHHHHHH--hcCCCCeEecCCCCCCEEEcC
Q 001384 877 GSE-------KILVYEYMEGGSLEDII----SDRTRLTWRRRLDIAIDVARALVFLH--HECYPPIVHRDVKASNVLLDK 943 (1088)
Q Consensus 877 ~~~-------~~lv~e~~~~gsL~~~l----~~~~~l~~~~~~~i~~qi~~~L~yLH--~~~~~~ivH~DLkp~NIll~~ 943 (1088)
... .++||||+++ +|.+.+ .....+++..++.++.|++.|++||| +. +|+||||||+||+++.
T Consensus 91 ~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~~---~ivH~Dlkp~NIll~~ 166 (360)
T 3e3p_A 91 LGERDRRDIYLNVVMEYVPD-TLHRCCRNYYRRQVAPPPILIKVFLFQLIRSIGCLHLPSV---NVCHRDIKPHNVLVNE 166 (360)
T ss_dssp ECSSCTTCEEEEEEEECCSC-BHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHTSTTT---CCBCSCCCGGGEEEET
T ss_pred cccccccceeEEEEeecccc-cHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhCCCC---CeecCcCCHHHEEEeC
Confidence 333 7899999987 555443 35567899999999999999999999 77 9999999999999996
Q ss_pred -CCCEEEeecccceeecCCCCcccccccccccccCccccCCC-CCCcchhHHHHHHHHHHHHhCCcCCCCCchh--HHHH
Q 001384 944 -EGKALVTDFGLARVVSAGDSHVSTTIAGTVGYVAPEYGQTW-QATTKGDVYSFGVLAMELATGRRALEGGEEC--LVEW 1019 (1088)
Q Consensus 944 -~~~~kl~Dfg~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DvwslG~~l~elltg~~p~~~~~~~--~~~~ 1019 (1088)
++.+||+|||+++...... ......||+.|+|||++.+. .++.++||||+||++|||++|+.||.+.... ....
T Consensus 167 ~~~~~kl~Dfg~a~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~~~~ 244 (360)
T 3e3p_A 167 ADGTLKLCDFGSAKKLSPSE--PNVAYICSRYYRAPELIFGNQHYTTAVDIWSVGCIFAEMMLGEPIFRGDNSAGQLHEI 244 (360)
T ss_dssp TTTEEEECCCTTCBCCCTTS--CCCSTTSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHH
T ss_pred CCCcEEEeeCCCceecCCCC--CcccccCCcceeCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCcCCCChHHHHHHH
Confidence 8999999999998765332 23345689999999987654 5899999999999999999999999876542 1111
Q ss_pred HHhhhcc--------CCCCCCccccch---hhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1020 GRRVMGY--------GRHGPGRAVIPV---VLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1020 ~~~~~~~--------~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
.+..... ............ ...............++.+++.+|++.||.+||++.|+++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 314 (360)
T 3e3p_A 245 VRVLGCPSREVLRKLNPSHTDVDLYNSKGIPWSNVFSDHSLKDAKEAYDLLSALLQYLPEERMKPYEALC 314 (360)
T ss_dssp HHHHCCCCHHHHHHHCTTCCCGGGGCCCCCCHHHHTTTCCCTTHHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred HHHcCCCCHHHHHhcccchhhccccccccCCcccccchhhccccHHHHHHHHHHhccCccccCCHHHHhc
Confidence 1111000 000000000000 0000000011224567899999999999999999999975
No 262
>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=100.00 E-value=2e-35 Score=344.04 Aligned_cols=263 Identities=21% Similarity=0.313 Sum_probs=182.7
Q ss_pred CCCc-cceecccCceEEEEEEeC---CCcEEEEEEccccCccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEec--CCe
Q 001384 806 KFSE-DRIIGKGGFGTVYRGVLP---DGREVAVKKLQREGLEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLD--GSE 879 (1088)
Q Consensus 806 ~~~~-~~~LG~G~~g~Vy~~~~~---~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~--~~~ 879 (1088)
.|++ .++||+|+||+||+|+++ +++.||||++.... ....+.+|++++++ ++||||+++++++.. +..
T Consensus 21 ~y~~~g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~E~~~l~~----l~hpniv~~~~~~~~~~~~~ 94 (405)
T 3rgf_A 21 LFEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTG--ISMSACREIALLRE----LKHPNVISLQKVFLSHADRK 94 (405)
T ss_dssp HEECSSCCCC-----EEEEEEESSSSCCCCEEEEECSSSS--CCHHHHHHHHHHHH----CCCTTBCCCCEEEEETTTTE
T ss_pred hhhhcCcEeeecCCeEEEEEEEccCCCCeEEEEEEECCCC--CCHHHHHHHHHHHh----cCCCCeeeEeeEEecCCCCe
Confidence 3655 458999999999999965 57899999997653 34578899999997 679999999999954 678
Q ss_pred EEEEEEecCCCCHHHHHhhc---------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEE----cCCCC
Q 001384 880 KILVYEYMEGGSLEDIISDR---------TRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLL----DKEGK 946 (1088)
Q Consensus 880 ~~lv~e~~~~gsL~~~l~~~---------~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll----~~~~~ 946 (1088)
.++||||+++ +|.+++... ..+++..++.++.||+.||+|||++ +|+||||||+||++ +.++.
T Consensus 95 ~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~ 170 (405)
T 3rgf_A 95 VWLLFDYAEH-DLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHAN---WVLHRDLKPANILVMGEGPERGR 170 (405)
T ss_dssp EEEEEECCSE-EHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECCSSTTTTC
T ss_pred EEEEEeCCCC-CHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHhC---CEeCCCcCHHHeEEecCCCCCCc
Confidence 9999999975 888887532 2499999999999999999999999 99999999999999 67899
Q ss_pred EEEeecccceeecCCCC--cccccccccccccCccccCC-CCCCcchhHHHHHHHHHHHHhCCcCCCCCchh--------
Q 001384 947 ALVTDFGLARVVSAGDS--HVSTTIAGTVGYVAPEYGQT-WQATTKGDVYSFGVLAMELATGRRALEGGEEC-------- 1015 (1088)
Q Consensus 947 ~kl~Dfg~a~~~~~~~~--~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwslG~~l~elltg~~p~~~~~~~-------- 1015 (1088)
+||+|||+++.+..... .......||+.|+|||++.+ ..++.++||||+||++|||++|+.||.+..+.
T Consensus 171 ~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~~~~ 250 (405)
T 3rgf_A 171 VKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPYH 250 (405)
T ss_dssp EEECCTTCCC----------------CCCTTCCHHHHTTCCSCCHHHHHHHHHHHHHHHHHSSCTTCCCC------CCCC
T ss_pred EEEEECCCceecCCCCcccccCCCceecCcccCchhhcCCCcccchhhhHHHHHHHHHHHhCCCCCCCccccccccccch
Confidence 99999999987653221 22345678999999998876 45899999999999999999999999765331
Q ss_pred --HHHHHHhhhccCCCCCCccccc-------------hhhcCCCc-----cccHHHHHHHHHHHhhhcccCCCCCCCHHH
Q 001384 1016 --LVEWGRRVMGYGRHGPGRAVIP-------------VVLLGSGL-----AEGAEEMSELLRIGVRCTAEAPNARPNVKE 1075 (1088)
Q Consensus 1016 --~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~-----~~~~~~~~~l~~li~~cl~~dP~~RPs~~e 1075 (1088)
........+............. ........ .........+.+|+.+||+.||.+|||++|
T Consensus 251 ~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~L~~dP~~R~ta~e 330 (405)
T 3rgf_A 251 HDQLDRIFNVMGFPADKDWEDIKKMPEHSTLMKDFRRNTYTNCSLIKYMEKHKVKPDSKAFHLLQKLLTMDPIKRITSEQ 330 (405)
T ss_dssp HHHHHHHHHHHCCCCTTTCGGGGGSTTHHHHHHHCCGGGGTTCCHHHHHHTTTCCTTSHHHHHHHHHSCSSGGGSCCHHH
T ss_pred HHHHHHHHHhhCCCChhhcchhhcCcchhhhhhhccccCCCcchhhhhHhhcCCCCCHHHHHHHHHHccCCcccCCCHHH
Confidence 1111111111111111000000 00000000 000001346788999999999999999999
Q ss_pred HHH
Q 001384 1076 VLA 1078 (1088)
Q Consensus 1076 il~ 1078 (1088)
+++
T Consensus 331 ~L~ 333 (405)
T 3rgf_A 331 AMQ 333 (405)
T ss_dssp HHT
T ss_pred Hhc
Confidence 985
No 263
>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A
Probab=100.00 E-value=2.3e-35 Score=329.50 Aligned_cols=250 Identities=27% Similarity=0.394 Sum_probs=191.6
Q ss_pred cCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEec------
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGLEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLD------ 876 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~------ 876 (1088)
.++|++.+.||+|+||.||+|++. +++.||||++... ....+.+.+|++++++ ++||||+++++++.+
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~E~~~l~~----l~h~~i~~~~~~~~~~~~~~~ 79 (303)
T 1zy4_A 5 ASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHT-EEKLSTILSEVMLLAS----LNHQYVVRYYAAWLERRNFVK 79 (303)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEEE-HHHHHHHHHHHHHHTT----CCCTTBCCEEEEEEECCCCCC
T ss_pred cccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEecc-HHHHHHHHHHHHHHHh----cCchHHHHHHHHHHhhcchhh
Confidence 457899999999999999999975 7899999999653 2334678899999987 679999999998865
Q ss_pred -------CCeEEEEEEecCCCCHHHHHhhcC-CCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEE
Q 001384 877 -------GSEKILVYEYMEGGSLEDIISDRT-RLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKAL 948 (1088)
Q Consensus 877 -------~~~~~lv~e~~~~gsL~~~l~~~~-~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~k 948 (1088)
....++||||+++|+|.++++... .+++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+|
T Consensus 80 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dlkp~Nil~~~~~~~k 156 (303)
T 1zy4_A 80 PMTAVKKKSTLFIQMEYCENGTLYDLIHSENLNQQRDEYWRLFRQILEALSYIHSQ---GIIHRDLKPMNIFIDESRNVK 156 (303)
T ss_dssp ------CEEEEEEEEECCCSCBHHHHHHHSCGGGCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEE
T ss_pred hhcccccCCceEEEEecCCCCCHHHhhhccccccchHHHHHHHHHHHHHHHHHHhC---CeecccCCHHhEEEcCCCCEE
Confidence 356799999999999999998544 588999999999999999999999 999999999999999999999
Q ss_pred EeecccceeecCCC-------------CcccccccccccccCccccCCC-CCCcchhHHHHHHHHHHHHhCCcCCCCCch
Q 001384 949 VTDFGLARVVSAGD-------------SHVSTTIAGTVGYVAPEYGQTW-QATTKGDVYSFGVLAMELATGRRALEGGEE 1014 (1088)
Q Consensus 949 l~Dfg~a~~~~~~~-------------~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DvwslG~~l~elltg~~p~~~~~~ 1014 (1088)
|+|||.++...... ........|+..|+|||++.+. .++.++||||+|+++|||++ ||....+
T Consensus 157 l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~---p~~~~~~ 233 (303)
T 1zy4_A 157 IGDFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIY---PFSTGME 233 (303)
T ss_dssp ECCCCCCSCTTC-------------------------CTTSCHHHHTSCSCCCTHHHHHHHHHHHHHHHS---CCSSHHH
T ss_pred EeeCcchhhcccccchhccccccccccccccccCCCcccccCcccccCCCCCcchhhHHHHHHHHHHHHh---ccCCchh
Confidence 99999997654221 1122345689999999988754 78999999999999999998 5543222
Q ss_pred hHHHHHHhhhccCCCCCCccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1015 CLVEWGRRVMGYGRHGPGRAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1015 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
..+.......... ..+. ..+...+..+.+++.+|++.||.+||+++|+++
T Consensus 234 -~~~~~~~~~~~~~------~~~~-------~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~ 283 (303)
T 1zy4_A 234 -RVNILKKLRSVSI------EFPP-------DFDDNKMKVEKKIIRLLIDHDPNKRPGARTLLN 283 (303)
T ss_dssp -HHHHHHHHHSTTC------CCCT-------TCCTTTSHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred -HHHHHHhcccccc------ccCc-------cccccchHHHHHHHHHHHhcCcccCcCHHHHhC
Confidence 1122222211000 0010 112233456788999999999999999999986
No 264
>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*
Probab=100.00 E-value=1.6e-35 Score=344.67 Aligned_cols=267 Identities=23% Similarity=0.246 Sum_probs=200.4
Q ss_pred cCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCccchHHHHHHHHHHhCCCC----CCCCCceeEEeeEEe---
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGLEGEREFRAEMEVLSGNGF----GWPHPNLVTLYGWCL--- 875 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~----~l~h~niv~l~~~~~--- 875 (1088)
.++|++.+.||+|+||+||+|++. +++.||||++... ....+.+.+|+++++.+.. ...|+||+++++++.
T Consensus 36 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~~ 114 (397)
T 1wak_A 36 NGRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSA-EHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISG 114 (397)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEEEE
T ss_pred CCeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecC-CcchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceeecC
Confidence 478999999999999999999965 6889999999754 2334567889888876421 113889999999987
Q ss_pred -cCCeEEEEEEecCCCCHHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCC-------
Q 001384 876 -DGSEKILVYEYMEGGSLEDIISDR--TRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEG------- 945 (1088)
Q Consensus 876 -~~~~~~lv~e~~~~gsL~~~l~~~--~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~------- 945 (1088)
.....++||||+ ++++.+++... ..+++.+++.++.||+.||+|||+++ +|+||||||+|||++.++
T Consensus 115 ~~~~~~~lv~e~~-~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~--givHrDikp~NIll~~~~~~~~~~~ 191 (397)
T 1wak_A 115 VNGTHICMVFEVL-GHHLLKWIIKSNYQGLPLPCVKKIIQQVLQGLDYLHTKC--RIIHTDIKPENILLSVNEQYIRRLA 191 (397)
T ss_dssp TTEEEEEEEECCC-CCBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTT--CEECCCCSGGGEEECCCHHHHHHHH
T ss_pred CCCceEEEEEecc-CccHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHhC--CEecCCCCHHHeeEeccchhhhhhh
Confidence 556889999999 55776666543 46999999999999999999999964 899999999999999775
Q ss_pred ------------------------------------------CEEEeecccceeecCCCCcccccccccccccCccccCC
Q 001384 946 ------------------------------------------KALVTDFGLARVVSAGDSHVSTTIAGTVGYVAPEYGQT 983 (1088)
Q Consensus 946 ------------------------------------------~~kl~Dfg~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~ 983 (1088)
.+||+|||.++..... .....||..|+|||++.+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DfG~a~~~~~~----~~~~~gt~~y~aPE~~~~ 267 (397)
T 1wak_A 192 AEATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKH----FTEDIQTRQYRSLEVLIG 267 (397)
T ss_dssp HHHC---------------------CCTTSCCTTSGGGGGGCCEEECCGGGCEETTBC----SCSCCSCGGGCCHHHHHT
T ss_pred hhhHHHhhcCCCCCCCCccccCCcccccccccccccccccccceEecccccccccccc----CccCCCCCcccCChhhcC
Confidence 8999999999876432 234578999999999998
Q ss_pred CCCCcchhHHHHHHHHHHHHhCCcCCCCCchh----HHHHHHhh---hc----------------cCCCCCCccccch--
Q 001384 984 WQATTKGDVYSFGVLAMELATGRRALEGGEEC----LVEWGRRV---MG----------------YGRHGPGRAVIPV-- 1038 (1088)
Q Consensus 984 ~~~~~~~DvwslG~~l~elltg~~p~~~~~~~----~~~~~~~~---~~----------------~~~~~~~~~~~~~-- 1038 (1088)
..++.++|||||||++|||++|+.||...... ........ .. +............
T Consensus 268 ~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (397)
T 1wak_A 268 SGYNTPADIWSTACMAFELATGDYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITKLKP 347 (397)
T ss_dssp SCCCTHHHHHHHHHHHHHHHHSSCSCCCCCCSSSCHHHHHHHHHHHHHCSCCHHHHHHCTTGGGTBCTTSSBSSCCCCCC
T ss_pred CCCCcHHHHHHHHHHHHHHhhCCCCCCCCcccccCchHHHHHHHHHhcCCCChHHhhcccccccccCCccccccccccCC
Confidence 89999999999999999999999999764320 00100000 00 0000000000000
Q ss_pred ----hhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1039 ----VLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1039 ----~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
.........+......+.+++.+||+.||++||+++|+++
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 391 (397)
T 1wak_A 348 WGLFEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAECLR 391 (397)
T ss_dssp CCHHHHHHHTSCCCHHHHHHHHHHHGGGGCSSGGGSCCHHHHHT
T ss_pred cchhHhhhhhcccchhhHHHHHHHHHHHhccChhhcCCHHHHhh
Confidence 0000011234667788999999999999999999999985
No 265
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=7.7e-35 Score=337.71 Aligned_cols=350 Identities=20% Similarity=0.165 Sum_probs=222.2
Q ss_pred cccccCCCCCCcc-cCCceeCCCCceeEEeccccccccccccccccCCccCCeeeCCCCCCCCCcCccCCCCCCCcEEEC
Q 001384 56 HYMQWNQSSSPCE-WPGIICSPDKARVNGLNLTDWNISGDIFNNFSALTQLSYLDLSRNTFSGSIPDDLSSCRSLKYLNL 134 (1088)
Q Consensus 56 ~~~sW~~~~~~C~-W~gv~C~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 134 (1088)
.+++|....+||. |.+..|.....++ ............-..++++++|++++|.++...+..+..+++|++|+|
T Consensus 2 ~~~~~~~~~~C~~~~~~~~c~~~~~~i-----~~~~~~~~~~~~~~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L 76 (390)
T 3o6n_A 2 NVKPRQPEYKCIDSNLQYDCVFYDVHI-----DMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNL 76 (390)
T ss_dssp -----CCEECBCC------EEEESCEE-----CSSCCCCEESCSSGGGCCCSEEEEESCEESEECTHHHHHCCCCSEEEC
T ss_pred CcCCCCCccceehhhhhhccceeeeee-----ecccccccccccccccCCceEEEecCCchhhCChhHhcccccCcEEEC
Confidence 3678998888885 5555553222222 111111111122235688999999999998444445788999999999
Q ss_pred ccccccCcc--cCCCCCCCceeecccccccccccCchhhhcccceEEeccCccCCCCCCccccCCCCCcEEEccCccccc
Q 001384 135 SHNILSGDL--NLSGLRSLEILDLSVNRIHGEISFSFPAICEKLVVANLSLNNLTGRIDTCFDGCLNLRYLDLSSNNFRG 212 (1088)
Q Consensus 135 s~n~l~~~~--~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~ 212 (1088)
++|.+++.. .+.++++|++|+|++|++++..+..+ ..+++|++|+|++|+++...+..|.+++
T Consensus 77 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~l~~~~~~~l~-------------- 141 (390)
T 3o6n_A 77 NDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF-QNVPLLTVLVLERNDLSSLPRGIFHNTP-------------- 141 (390)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSCCCCCCTTTTTTCT--------------
T ss_pred CCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHh-cCCCCCCEEECCCCccCcCCHHHhcCCC--------------
Confidence 999887643 57777777777777777764433332 2224444444444444443333344444
Q ss_pred cccccCcccceecccCcccccccccccccCCCccCEEEcCCCcccccCcccccCCCCCcEEEccCccccCCCccccCCCC
Q 001384 213 NIWNGLAQLVEFSVSENVLSGVVSSSVFKENCSLEIFDLSENEFIGDFPGEVSNCRNLVVLNLFGNNFSGPIPAEIGSIS 292 (1088)
Q Consensus 213 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 292 (1088)
+|++|++++|++++..|..+.++++|++|++++|++++. .+..++
T Consensus 142 --------------------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~ 186 (390)
T 3o6n_A 142 --------------------------------KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIP 186 (390)
T ss_dssp --------------------------------TCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCT
T ss_pred --------------------------------CCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---cccccc
Confidence 444444444444444444444555555555555554432 133444
Q ss_pred CCCEEeCCCCcCCccCcccccCCCCCcEEEcCCCcCCCchhHhhhcccccceeecCcCcccCCCCCccccCCCCcCEEEc
Q 001384 293 GLEALFLGKNNFLSVIPESLLNLSKLEVLDLSSNNFGGEVQKIFGRFTQVKILALHSNSYIDGMNSSGILKLPNISRLDL 372 (1088)
Q Consensus 293 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L 372 (1088)
+|+.|++++|.+.+. ...++|++|++++|.+...... ..++|+.|++++|.+.+. ..+..+++|++|+|
T Consensus 187 ~L~~L~l~~n~l~~~-----~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~L 255 (390)
T 3o6n_A 187 SLFHANVSYNLLSTL-----AIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTDT---AWLLNYPGLVEVDL 255 (390)
T ss_dssp TCSEEECCSSCCSEE-----ECCSSCSEEECCSSCCCEEECC---CCSSCCEEECCSSCCCCC---GGGGGCTTCSEEEC
T ss_pred ccceeeccccccccc-----CCCCcceEEECCCCeeeecccc---ccccccEEECCCCCCccc---HHHcCCCCccEEEC
Confidence 555555555544331 2223455555555555443221 124555555555554331 35667889999999
Q ss_pred cCCccCCCCCccccCCcCcceeeccccccCCcCCcccCCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEccccccccC
Q 001384 373 SHNNFTGPLPVEISQMRSLKFLILAHNRFNGSIPAVYGNMPNLQTLDLSFNELTGPIPPSIGNLTSLLWLMLANNSLSGE 452 (1088)
Q Consensus 373 s~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 452 (1088)
++|.+++..|..+..+++|+.|+|++|+++ .+|..+..+++|++|+|++|+++ .+|..++.+++|++|+|++|+++.
T Consensus 256 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~- 332 (390)
T 3o6n_A 256 SYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT- 332 (390)
T ss_dssp CSSCCCEEESGGGTTCSSCCEEECCSSCCC-EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC-
T ss_pred CCCcCCCcChhHccccccCCEEECCCCcCc-ccCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccce-
Confidence 999999888999999999999999999999 57777889999999999999999 688889999999999999999984
Q ss_pred CCccccCCCCCCeEEccCCcCccC
Q 001384 453 IPGEIGNCTSLLWLNLSNNKLSGN 476 (1088)
Q Consensus 453 ~p~~l~~l~~L~~L~L~~N~l~g~ 476 (1088)
+| +..+++|+.|++++|++++.
T Consensus 333 ~~--~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 333 LK--LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp CC--CCTTCCCSEEECCSSCEEHH
T ss_pred eC--chhhccCCEEEcCCCCccch
Confidence 44 78899999999999999864
No 266
>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...
Probab=100.00 E-value=1.7e-35 Score=345.47 Aligned_cols=258 Identities=24% Similarity=0.305 Sum_probs=192.0
Q ss_pred CCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecC------
Q 001384 805 GKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGLEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDG------ 877 (1088)
Q Consensus 805 ~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~------ 877 (1088)
.+|++.+.||+|+||+||+|++. +|+.||||++..... ...+|+++++. ++||||+++++++...
T Consensus 54 ~~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~~----~~~~E~~il~~----l~hpniv~l~~~~~~~~~~~~~ 125 (420)
T 1j1b_A 54 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR----FKNRELQIMRK----LDHCNIVRLRYFFYSSGEKKDE 125 (420)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECCTT----SCCHHHHHHHT----CCCTTBCCEEEEEEEEETTTTE
T ss_pred ceEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEecccch----hHHHHHHHHHH----cCCCCccceeeEEeccCCCCcc
Confidence 35888999999999999999986 689999999875422 23468899986 6799999999988542
Q ss_pred CeEEEEEEecCCCCHHHHHh----hcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCC-CCEEEeec
Q 001384 878 SEKILVYEYMEGGSLEDIIS----DRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKE-GKALVTDF 952 (1088)
Q Consensus 878 ~~~~lv~e~~~~gsL~~~l~----~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~-~~~kl~Df 952 (1088)
...++||||+++ ++.+.+. ....+++..++.++.||++||+|||++ +|+||||||+|||++.+ +.+||+||
T Consensus 126 ~~~~lv~e~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NILl~~~~~~~kl~DF 201 (420)
T 1j1b_A 126 VYLNLVLDYVPE-TVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSF---GICHRDIKPQNLLLDPDTAVLKLCDF 201 (420)
T ss_dssp EEEEEEEECCCE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCSGGGEEEETTTTEEEECCC
T ss_pred eeEEeehhcccc-cHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChhhEEEeCCCCeEEeccc
Confidence 236789999986 7766654 346799999999999999999999999 99999999999999965 56899999
Q ss_pred ccceeecCCCCcccccccccccccCccccCCC-CCCcchhHHHHHHHHHHHHhCCcCCCCCchh--HHHHHHhhhccCC-
Q 001384 953 GLARVVSAGDSHVSTTIAGTVGYVAPEYGQTW-QATTKGDVYSFGVLAMELATGRRALEGGEEC--LVEWGRRVMGYGR- 1028 (1088)
Q Consensus 953 g~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DvwslG~~l~elltg~~p~~~~~~~--~~~~~~~~~~~~~- 1028 (1088)
|+++...... ......+|+.|+|||++.+. .++.++||||+||++|||++|+.||.+.... ..+...... ...
T Consensus 202 G~a~~~~~~~--~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~G~~pf~~~~~~~~l~~i~~~lg-~p~~ 278 (420)
T 1j1b_A 202 GSAKQLVRGE--PNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLG-TPTR 278 (420)
T ss_dssp TTCEECCTTC--CCCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHC-SCCH
T ss_pred hhhhhcccCC--CceeeeeCCCcCCHHHHcCCCCCCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhC-CCCH
Confidence 9998765332 23346789999999987654 7999999999999999999999999876431 112111100 000
Q ss_pred ------CCCCcc-ccchhhcCCCc--cccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1029 ------HGPGRA-VIPVVLLGSGL--AEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1029 ------~~~~~~-~~~~~~~~~~~--~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
.....+ .++. ...... ........++.+++.+|++.||.+||++.|+++
T Consensus 279 ~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~Li~~~L~~dP~~R~t~~e~l~ 336 (420)
T 1j1b_A 279 EQIREMNPNYTEFKFPQ-IKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACA 336 (420)
T ss_dssp HHHHHHCSCCCCCCCCC-CCCCCHHHHSCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred HHHHhhChhhhhhccCc-cCCCCHHHhcCCCCCHHHHHHHHHhccCChhHCCCHHHHhC
Confidence 000000 0000 000000 001123467889999999999999999999975
No 267
>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*
Probab=100.00 E-value=1.4e-35 Score=336.12 Aligned_cols=249 Identities=25% Similarity=0.314 Sum_probs=171.3
Q ss_pred cCCCCccc-eecccCceEEEEEEeC-CCcEEEEEEccccCccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEec----C
Q 001384 804 TGKFSEDR-IIGKGGFGTVYRGVLP-DGREVAVKKLQREGLEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLD----G 877 (1088)
Q Consensus 804 ~~~~~~~~-~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~----~ 877 (1088)
.++|++.+ +||+|+||+||+|+++ +++.||||++... ....+|+....+ .+.||||+++++++.. +
T Consensus 27 ~~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~-----~~~~~e~~~~~~---~~~h~~i~~~~~~~~~~~~~~ 98 (336)
T 3fhr_A 27 TDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDS-----PKARQEVDHHWQ---ASGGPHIVCILDVYENMHHGK 98 (336)
T ss_dssp GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESS-----HHHHHHHHHHHH---HTTSTTBCCEEEEEEEEETTE
T ss_pred cceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCc-----HHHHHHHHHHHH---hcCCCChHHHHHHHhhccCCC
Confidence 45788854 6999999999999986 6899999998654 122223332221 1479999999999876 4
Q ss_pred CeEEEEEEecCCCCHHHHHhhcC--CCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcC---CCCEEEeec
Q 001384 878 SEKILVYEYMEGGSLEDIISDRT--RLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDK---EGKALVTDF 952 (1088)
Q Consensus 878 ~~~~lv~e~~~~gsL~~~l~~~~--~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~---~~~~kl~Df 952 (1088)
...++||||+++|+|.+++.... .+++.+++.++.|++.||+|||++ +|+||||||+||+++. ++.+||+||
T Consensus 99 ~~~~lv~e~~~gg~L~~~l~~~~~~~l~~~~~~~i~~ql~~~l~~LH~~---~ivH~dlkp~NIll~~~~~~~~~kl~Df 175 (336)
T 3fhr_A 99 RCLLIIMECMEGGELFSRIQERGDQAFTEREAAEIMRDIGTAIQFLHSH---NIAHRDVKPENLLYTSKEKDAVLKLTDF 175 (336)
T ss_dssp EEEEEEEECCTTEEHHHHHHTC-CCCCBHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCSSTTCCEEECCC
T ss_pred ceEEEEEeccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEEecCCCceEEEecc
Confidence 55899999999999999998754 699999999999999999999999 9999999999999986 455999999
Q ss_pred ccceeecCCCCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHH-HHhhhccCCCCC
Q 001384 953 GLARVVSAGDSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEECLVEW-GRRVMGYGRHGP 1031 (1088)
Q Consensus 953 g~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~-~~~~~~~~~~~~ 1031 (1088)
|+++..... ......+|+.|+|||++.+..++.++||||+|+++|+|++|+.||.......... .........
T Consensus 176 g~~~~~~~~---~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~--- 249 (336)
T 3fhr_A 176 GFAKETTQN---ALQTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQAISPGMKRRIRLGQ--- 249 (336)
T ss_dssp TTCEEC-------------------------CHHHHHHHHHHHHHHHHHHHHSSCCC-----------------------
T ss_pred ccceecccc---ccccCCCCcCccChhhhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCccchhhhhhHHHhhhccc---
Confidence 999865422 2334568999999999988899999999999999999999999997653311100 000000000
Q ss_pred CccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1032 GRAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1032 ~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
.............++.+++.+|++.||++||+++|+++
T Consensus 250 ---------~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 287 (336)
T 3fhr_A 250 ---------YGFPNPEWSEVSEDAKQLIRLLLKTDPTERLTITQFMN 287 (336)
T ss_dssp ----------CCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred ---------cccCchhhccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 00000111233467889999999999999999999987
No 268
>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}
Probab=100.00 E-value=1.1e-35 Score=335.01 Aligned_cols=266 Identities=20% Similarity=0.236 Sum_probs=194.2
Q ss_pred cCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEe-------
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGLEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCL------- 875 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~------- 875 (1088)
.++|++.+.||+|+||.||+|++. +++.||||++........+.+.+|++++++ ++||||+++++++.
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~----l~h~~iv~~~~~~~~~~~~~~ 85 (320)
T 2i6l_A 10 GSRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKIIRR----LDHDNIVKVFEILGPSGSQLT 85 (320)
T ss_dssp TTTEEEEEECC-----CEEEEEETTTTEEEEEEEEECCSHHHHHHHHHHHHHHHT----CCCTTBCCEEEEECTTSCBCC
T ss_pred CCceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecCChHHHHHHHHHHHHHHh----cCCCCeeEEEEeccccccccc
Confidence 468999999999999999999986 589999999987655556788999999997 67999999999874
Q ss_pred -------cCCeEEEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEc-CCCCE
Q 001384 876 -------DGSEKILVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLD-KEGKA 947 (1088)
Q Consensus 876 -------~~~~~~lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~-~~~~~ 947 (1088)
+....++||||++ |+|.++++. .++++..++.++.|++.||+|||++ +|+||||||+||+++ +++.+
T Consensus 86 ~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~-~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~ 160 (320)
T 2i6l_A 86 DDVGSLTELNSVYIVQEYME-TDLANVLEQ-GPLLEEHARLFMYQLLRGLKYIHSA---NVLHRDLKPANLFINTEDLVL 160 (320)
T ss_dssp C----CCSCSEEEEEEECCS-EEHHHHHTT-CCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEEETTTTEE
T ss_pred cccccccccCceeEEeeccC-CCHHHHhhc-CCccHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEEcCCCCeE
Confidence 3467899999998 599999965 5689999999999999999999999 999999999999997 56799
Q ss_pred EEeecccceeecCCCC--cccccccccccccCccccCC-CCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHH-HHHHhh
Q 001384 948 LVTDFGLARVVSAGDS--HVSTTIAGTVGYVAPEYGQT-WQATTKGDVYSFGVLAMELATGRRALEGGEECLV-EWGRRV 1023 (1088)
Q Consensus 948 kl~Dfg~a~~~~~~~~--~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~-~~~~~~ 1023 (1088)
||+|||.++....... .......++..|+|||.+.. ..++.++||||||+++|||++|+.||.+...... ......
T Consensus 161 kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~ 240 (320)
T 2i6l_A 161 KIGDFGLARIMDPHYSHKGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKTLFAGAHELEQMQLILES 240 (320)
T ss_dssp EECCCTTCBCC--------CCCGGGSCCTTCCHHHHHCTTCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHH
T ss_pred EEccCccccccCCCcccccccccccccccccCcHHhcCcccCCchhhhHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHh
Confidence 9999999987643211 12234567899999997654 6889999999999999999999999987654211 110000
Q ss_pred hccCCCC-------CCccccchhhcCCCc---cccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1024 MGYGRHG-------PGRAVIPVVLLGSGL---AEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1024 ~~~~~~~-------~~~~~~~~~~~~~~~---~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
....... ............... ........++.+++.+|++.||++||+++|+++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 305 (320)
T 2i6l_A 241 IPVVHEEDRQELLSVIPVYIRNDMTEPHKPLTQLLPGISREAVDFLEQILTFSPMDRLTAEEALS 305 (320)
T ss_dssp SCCCCHHHHHHHHTTSCHHHHHHTTSCCCCHHHHSTTCCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred cCCCchhhhhhhhhcCcccccccccCCCCChhHhcchhhHHHHHHHHHHcCCCccccCCHHHHhC
Confidence 0000000 000000000000000 001123467889999999999999999999976
No 269
>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...
Probab=100.00 E-value=5e-36 Score=337.57 Aligned_cols=244 Identities=25% Similarity=0.400 Sum_probs=200.5
Q ss_pred HHcCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCcc------chHHHHHHHHHHhCCCCCCCCCceeEEeeEE
Q 001384 802 KATGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGLE------GEREFRAEMEVLSGNGFGWPHPNLVTLYGWC 874 (1088)
Q Consensus 802 ~~~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~------~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~ 874 (1088)
...++|++.+.||+|+||.||+|++. +++.||||++...... ....+..|+.++.++. ..||||+++++++
T Consensus 40 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~--~~~~~i~~~~~~~ 117 (320)
T 3a99_A 40 PLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVS--SGFSGVIRLLDWF 117 (320)
T ss_dssp CCTTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHC--SSSCSBCCEEEEE
T ss_pred CccCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhc--cCCCCceEEEEEE
Confidence 34578999999999999999999965 6899999999765322 1234667888887643 2479999999999
Q ss_pred ecCCeEEEEEEecCC-CCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEc-CCCCEEEeec
Q 001384 875 LDGSEKILVYEYMEG-GSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLD-KEGKALVTDF 952 (1088)
Q Consensus 875 ~~~~~~~lv~e~~~~-gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~-~~~~~kl~Df 952 (1088)
..++..++||||+.+ ++|.+++.....+++..++.++.|++.||+|||+. +|+||||||+||+++ .++.+||+||
T Consensus 118 ~~~~~~~lv~e~~~~~~~L~~~l~~~~~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~~kL~Df 194 (320)
T 3a99_A 118 ERPDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNC---GVLHRDIKDENILIDLNRGELKLIDF 194 (320)
T ss_dssp ECSSEEEEEEECCSSEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTTTEEEECCC
T ss_pred ecCCcEEEEEEcCCCCccHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHC---CcEeCCCCHHHEEEeCCCCCEEEeeC
Confidence 999999999999986 89999999888899999999999999999999999 999999999999999 7899999999
Q ss_pred ccceeecCCCCcccccccccccccCccccCCCCC-CcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCCCC
Q 001384 953 GLARVVSAGDSHVSTTIAGTVGYVAPEYGQTWQA-TTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRHGP 1031 (1088)
Q Consensus 953 g~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~ 1031 (1088)
|+++..... ......||+.|+|||++.+..+ +.++||||||+++|||++|+.||..... ...... .
T Consensus 195 g~~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~----~~~~~~------~ 261 (320)
T 3a99_A 195 GSGALLKDT---VYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEE----IIRGQV------F 261 (320)
T ss_dssp TTCEECCSS---CBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHHH----HHHCCC------C
T ss_pred ccccccccc---cccCCCCCccCCChHHhccCCCCCccchHHhHHHHHHHHHHCCCCCCChhh----hhcccc------c
Confidence 999876532 2334568999999998776655 6889999999999999999999976321 111000 0
Q ss_pred CccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1032 GRAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1032 ~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
. +.....++.+++.+|++.||++||+++|+++
T Consensus 262 ----~-----------~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~ 293 (320)
T 3a99_A 262 ----F-----------RQRVSSECQHLIRWCLALRPSDRPTFEEIQN 293 (320)
T ss_dssp ----C-----------SSCCCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred ----c-----------cccCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 0 1112356888999999999999999999986
No 270
>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*
Probab=100.00 E-value=4.3e-35 Score=335.11 Aligned_cols=266 Identities=23% Similarity=0.271 Sum_probs=199.6
Q ss_pred cCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCc-cchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecC----
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGL-EGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDG---- 877 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~---- 877 (1088)
.++|++.+.||+|+||.||+|++. +|+.||||++..... .....+.+|+++++. ++||||+++++++..+
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~----l~h~~iv~~~~~~~~~~~~~ 85 (353)
T 2b9h_A 10 SSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKH----FKHENIITIFNIQRPDSFEN 85 (353)
T ss_dssp CTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCSSHHHHHHHHHHHHHHHH----CCCTTBCCEEEECCCSCSTT
T ss_pred ccceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeecccccchHHHHHHHHHHHHHh----CcCCCcCCeeeeecccccCc
Confidence 468999999999999999999976 689999999975432 234567899999987 6799999999987754
Q ss_pred -CeEEEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccce
Q 001384 878 -SEKILVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLAR 956 (1088)
Q Consensus 878 -~~~~lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~ 956 (1088)
...++||||++ |+|.+++.. ..+++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++
T Consensus 86 ~~~~~lv~e~~~-~~L~~~~~~-~~~~~~~~~~~~~qi~~~L~~LH~~---~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~ 160 (353)
T 2b9h_A 86 FNEVYIIQELMQ-TDLHRVIST-QMLSDDHIQYFIYQTLRAVKVLHGS---NVIHRDLKPSNLLINSNCDLKVCDFGLAR 160 (353)
T ss_dssp CCCEEEEECCCS-EEHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTCCEEECCCTTCE
T ss_pred cceEEEEEeccC-ccHHHHHhh-cCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEEcCCCcEEEEeccccc
Confidence 67899999997 599999876 4699999999999999999999999 99999999999999999999999999998
Q ss_pred eecCCCCc---------ccccccccccccCccccC-CCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhH-HHHHHhhhc
Q 001384 957 VVSAGDSH---------VSTTIAGTVGYVAPEYGQ-TWQATTKGDVYSFGVLAMELATGRRALEGGEECL-VEWGRRVMG 1025 (1088)
Q Consensus 957 ~~~~~~~~---------~~~~~~gt~~y~aPE~~~-~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~-~~~~~~~~~ 1025 (1088)
........ ......||+.|+|||++. +..++.++||||+||++|+|++|+.||.+..... .........
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~ 240 (353)
T 2b9h_A 161 IIDESAADNSEPTGQQSGMVEFVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFPGRDYRHQLLLIFGIIG 240 (353)
T ss_dssp ECC----------------CCCCCCGGGCCHHHHHSCCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHC
T ss_pred ccccccccccCccccccchhhccccccccCCeeeccCCCccchhhHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHhC
Confidence 76532211 122357899999999764 4688999999999999999999999998765311 111111111
Q ss_pred cCCCCCCccccc-h----hhc---C----CCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1026 YGRHGPGRAVIP-V----VLL---G----SGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1026 ~~~~~~~~~~~~-~----~~~---~----~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
............ . ... . ...........++.+++.+|++.||++||+++|+++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 305 (353)
T 2b9h_A 241 TPHSDNDLRCIESPRAREYIKSLPMYPAAPLEKMFPRVNPKGIDLLQRMLVFDPAKRITAKEALE 305 (353)
T ss_dssp CCCSTTTTTTCCCHHHHHHHHTSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred CCchhccccccccchhhHHhhcccCCCCcchhhhcccCCHHHHHHHHHhcCcCcccCCCHHHHhc
Confidence 100000000000 0 000 0 000001223467889999999999999999999986
No 271
>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*
Probab=100.00 E-value=3.7e-35 Score=344.21 Aligned_cols=250 Identities=22% Similarity=0.308 Sum_probs=188.8
Q ss_pred CCCCccceecccCceEEEEEEeCCCcEEEEEEccccCccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeEEEEE
Q 001384 805 GKFSEDRIIGKGGFGTVYRGVLPDGREVAVKKLQREGLEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEKILVY 884 (1088)
Q Consensus 805 ~~~~~~~~LG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~~lv~ 884 (1088)
+.|...++||+|+||+||.+...+|+.||||++... ..+.+.+|++++.+. .+||||+++++++.++...++||
T Consensus 15 ~~~~~~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~---~~~~~~~E~~~l~~l---~~HpnIv~~~~~~~~~~~~~lv~ 88 (434)
T 2rio_A 15 NLVVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLID---FCDIALMEIKLLTES---DDHPNVIRYYCSETTDRFLYIAL 88 (434)
T ss_dssp SCEEEEEEEEECSTTCEEEEEESSSSEEEEEEEEGG---GHHHHHHHHHHHHHH---TTSTTBCCEEEEEECSSEEEEEE
T ss_pred heeeccCeEeeCCCeEEEEEEEECCeEEEEEEEcHH---HHHHHHHHHHHHHhc---cCCCCcCeEEEEEecCCeEEEEE
Confidence 345556889999999998777668999999998754 235678899988752 37999999999999999999999
Q ss_pred EecCCCCHHHHHhhcCCC-------CHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCC-------------
Q 001384 885 EYMEGGSLEDIISDRTRL-------TWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKE------------- 944 (1088)
Q Consensus 885 e~~~~gsL~~~l~~~~~l-------~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~------------- 944 (1088)
||++ |+|.++++..... ++..++.++.||+.||+|||++ +|+||||||+||+++.+
T Consensus 89 E~~~-gsL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDLkp~NILl~~~~~~~~~~~~~~~~ 164 (434)
T 2rio_A 89 ELCN-LNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLHSL---KIIHRDLKPQNILVSTSSRFTADQQTGAEN 164 (434)
T ss_dssp CCCS-EEHHHHHHTC------------CCHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEECCHHHHSCCTTCCCS
T ss_pred ecCC-CCHHHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHHHC---CccccCCChHhEEEecCcccccccccCCCc
Confidence 9996 5999999875432 2334578999999999999999 99999999999999754
Q ss_pred CCEEEeecccceeecCCCCc---ccccccccccccCccccCC-------CCCCcchhHHHHHHHHHHHHh-CCcCCCCCc
Q 001384 945 GKALVTDFGLARVVSAGDSH---VSTTIAGTVGYVAPEYGQT-------WQATTKGDVYSFGVLAMELAT-GRRALEGGE 1013 (1088)
Q Consensus 945 ~~~kl~Dfg~a~~~~~~~~~---~~~~~~gt~~y~aPE~~~~-------~~~~~~~DvwslG~~l~ellt-g~~p~~~~~ 1013 (1088)
+.+||+|||+++........ ......||+.|+|||++.+ ..++.++||||+||++|||++ |+.||....
T Consensus 165 ~~~kL~DFG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~ 244 (434)
T 2rio_A 165 LRILISDFGLCKKLDSGQSSFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHPFGDKY 244 (434)
T ss_dssp CEEEECCCTTCEECCC--------------CCTTSCHHHHSCCCTTSCCCCCCTHHHHHHHHHHHHHHHTTSCCTTCSTT
T ss_pred eEEEEcccccceecCCCCccceeeecCCCCCCCccCHHHhccccccccccCcchhhhhHhHHHHHHHHHhCCCCCCCCch
Confidence 48999999999887543322 1234579999999998765 678999999999999999999 999997653
Q ss_pred hhHHHHHHhhhccCCCCCCccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1014 ECLVEWGRRVMGYGRHGPGRAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1014 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
............... . ..........++.+++.+|++.||.+||++.||++
T Consensus 245 ~~~~~i~~~~~~~~~----~----------~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~ 295 (434)
T 2rio_A 245 SRESNIIRGIFSLDE----M----------KCLHDRSLIAEATDLISQMIDHDPLKRPTAMKVLR 295 (434)
T ss_dssp THHHHHHHTCCCCCC----C----------TTCCCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred hhHHHHhcCCCCccc----c----------cccccccchHHHHHHHHHHhhCChhhCCCHHHHHh
Confidence 322222211110000 0 01113456678999999999999999999999975
No 272
>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*
Probab=100.00 E-value=9.1e-35 Score=335.75 Aligned_cols=206 Identities=23% Similarity=0.285 Sum_probs=170.9
Q ss_pred HHcCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCccchHHHHHHHHHHhCCC--CCCCCCceeEEeeEEecCC
Q 001384 802 KATGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGLEGEREFRAEMEVLSGNG--FGWPHPNLVTLYGWCLDGS 878 (1088)
Q Consensus 802 ~~~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~--~~l~h~niv~l~~~~~~~~ 878 (1088)
...++|++.+.||+|+||+||+|++. +++.||||++.... ....++..|++++..+. ....|++++++++++...+
T Consensus 51 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~~~ 129 (382)
T 2vx3_A 51 KWMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNKK-AFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRN 129 (382)
T ss_dssp EETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSSH-HHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEETT
T ss_pred EeeeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEeccH-HHHHHHHHHHHHHHHHHhcccccceeEEEeeeeeccCC
Confidence 34578999999999999999999976 68899999997542 22345667777765432 0122346999999999999
Q ss_pred eEEEEEEecCCCCHHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEc--CCCCEEEeeccc
Q 001384 879 EKILVYEYMEGGSLEDIISDR--TRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLD--KEGKALVTDFGL 954 (1088)
Q Consensus 879 ~~~lv~e~~~~gsL~~~l~~~--~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~--~~~~~kl~Dfg~ 954 (1088)
..++||||+++ +|.+++... ..+++..++.++.|++.||+|||++ ..+||||||||+||+++ .++.+||+|||+
T Consensus 130 ~~~lv~e~~~~-~L~~~l~~~~~~~~~~~~~~~i~~qi~~al~~lH~~-~~~ivHrDlkp~NIll~~~~~~~~kL~DFG~ 207 (382)
T 2vx3_A 130 HLCLVFEMLSY-NLYDLLRNTNFRGVSLNLTRKFAQQMCTALLFLATP-ELSIIHCDLKPENILLCNPKRSAIKIVDFGS 207 (382)
T ss_dssp EEEEEEECCCC-BHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHTST-TTCEECCCCSGGGEEESSTTSCCEEECCCTT
T ss_pred ceEEEEecCCC-CHHHHHhhcCcCCCCHHHHHHHHHHHHHHHHHhccC-CCCEEcCCCCcccEEEecCCCCcEEEEeccC
Confidence 99999999965 999999765 4599999999999999999999952 12899999999999995 478899999999
Q ss_pred ceeecCCCCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCch
Q 001384 955 ARVVSAGDSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEE 1014 (1088)
Q Consensus 955 a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~ 1014 (1088)
++..... .....||+.|+|||++.+..++.++|||||||++|||++|+.||.+...
T Consensus 208 a~~~~~~----~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~pf~~~~~ 263 (382)
T 2vx3_A 208 SCQLGQR----IYQYIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSGANE 263 (382)
T ss_dssp CEETTCC----CCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH
T ss_pred ceecccc----cccccCCccccChHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCH
Confidence 9876432 2345789999999999998999999999999999999999999987654
No 273
>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*
Probab=100.00 E-value=3.5e-35 Score=332.04 Aligned_cols=253 Identities=26% Similarity=0.387 Sum_probs=177.5
Q ss_pred CCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCc-cchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeEEE
Q 001384 805 GKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGL-EGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEKIL 882 (1088)
Q Consensus 805 ~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~~l 882 (1088)
++|++.+.||+|+||.||+|.++ +|+.||||++..... ....++..|+..+.+ .++||||+++++++.+++..++
T Consensus 22 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~---~~~h~niv~~~~~~~~~~~~~l 98 (327)
T 3aln_A 22 EDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMR---SSDCPYIVQFYGALFREGDCWI 98 (327)
T ss_dssp CSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCCCHHHHHHHHHHHHHHHS---SCCCTTBCCEEEEEECSSEEEE
T ss_pred HHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeecccCchHHHHHHHHHHHHHH---cCCCCcEeeeeeEEEeCCceEE
Confidence 67889999999999999999985 689999999976532 223455666664333 2689999999999999999999
Q ss_pred EEEecCCCCHHHHHhh-----cCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeeccccee
Q 001384 883 VYEYMEGGSLEDIISD-----RTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARV 957 (1088)
Q Consensus 883 v~e~~~~gsL~~~l~~-----~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~ 957 (1088)
||||+++ +|.+++.. ...+++..++.++.|++.||+|||+.. +|+||||||+||+++.++.+||+|||+++.
T Consensus 99 v~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~--~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~ 175 (327)
T 3aln_A 99 CMELMST-SFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLKENL--KIIHRDIKPSNILLDRSGNIKLCDFGISGQ 175 (327)
T ss_dssp EECCCSE-EHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHH--SCCCSCCCGGGEEEETTTEEEECCCSSSCC
T ss_pred EEeecCC-ChHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHHHHhccC--CEeECCCCHHHEEEcCCCCEEEccCCCcee
Confidence 9999986 88888763 567999999999999999999999963 899999999999999999999999999987
Q ss_pred ecCCCCcccccccccccccCcccc----CCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCCCCCc
Q 001384 958 VSAGDSHVSTTIAGTVGYVAPEYG----QTWQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRHGPGR 1033 (1088)
Q Consensus 958 ~~~~~~~~~~~~~gt~~y~aPE~~----~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 1033 (1088)
..... ......||..|+|||++ .+..++.++||||||+++|+|++|+.||.......... .... . .
T Consensus 176 ~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~-~~~~---~-~--- 245 (327)
T 3aln_A 176 LVDSI--AKTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPKWNSVFDQL-TQVV---K-G--- 245 (327)
T ss_dssp --------------------------------CCSHHHHHHHHHHHHHHHHSCCCSSCC--------CCCC---C-S---
T ss_pred ccccc--ccccCCCCccccCceeeccccCcCCCCchhhHHHHHHHHHHHHHCCCCCCCcchHHHHH-HHHh---c-C---
Confidence 64322 22334689999999988 46678999999999999999999999998643211110 0000 0 0
Q ss_pred cccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1034 AVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1034 ~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
....... .........+.+++.+|++.||++||++.|+++
T Consensus 246 --~~~~~~~---~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~ 285 (327)
T 3aln_A 246 --DPPQLSN---SEEREFSPSFINFVNLCLTKDESKRPKYKELLK 285 (327)
T ss_dssp --CCCCCCC---CSSCCCCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred --CCCCCCC---cccccCCHHHHHHHHHHhhCChhhCcCHHHHHh
Confidence 0000000 001123457889999999999999999999975
No 274
>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A
Probab=100.00 E-value=9.3e-35 Score=334.14 Aligned_cols=257 Identities=22% Similarity=0.292 Sum_probs=195.7
Q ss_pred cCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCcc--chHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeE
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGLE--GEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEK 880 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~--~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~ 880 (1088)
.++|.+.+.||+|+||.||+|++. +|+.||||++...... ..+.+.+|+.+++. ++||||+++++++......
T Consensus 41 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~----l~h~niv~~~~~~~~~~~~ 116 (371)
T 4exu_A 41 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKH----MQHENVIGLLDVFTPASSL 116 (371)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHH----CCCTTBCCCSEEECSCSSS
T ss_pred cccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHHHh----cCCCCchhhhhheeccCCc
Confidence 468999999999999999999976 6899999999864322 24578899999987 6799999999999877654
Q ss_pred ------EEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeeccc
Q 001384 881 ------ILVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGL 954 (1088)
Q Consensus 881 ------~lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~ 954 (1088)
++||||++ ++|.+++.. .+++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+
T Consensus 117 ~~~~~~~lv~e~~~-~~l~~~~~~--~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIll~~~~~~kL~Dfg~ 190 (371)
T 4exu_A 117 RNFYDFYLVMPFMQ-TDLQKIMGM--EFSEEKIQYLVYQMLKGLKYIHSA---GVVHRDLKPGNLAVNEDCELKILDFGL 190 (371)
T ss_dssp TTCCCCEEEEECCC-EEHHHHTTS--CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECSTTC
T ss_pred ccceeEEEEEcccc-ccHHHHhhc--CCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCcCHHHeEECCCCCEEEEecCc
Confidence 99999997 589888743 489999999999999999999999 999999999999999999999999999
Q ss_pred ceeecCCCCcccccccccccccCccccCC-CCCCcchhHHHHHHHHHHHHhCCcCCCCCchhH-HHHHHhhhccCCCCCC
Q 001384 955 ARVVSAGDSHVSTTIAGTVGYVAPEYGQT-WQATTKGDVYSFGVLAMELATGRRALEGGEECL-VEWGRRVMGYGRHGPG 1032 (1088)
Q Consensus 955 a~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~-~~~~~~~~~~~~~~~~ 1032 (1088)
++.... ......+|+.|+|||++.+ ..++.++||||+||++|+|++|+.||.+..... ........... .
T Consensus 191 a~~~~~----~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~----~ 262 (371)
T 4exu_A 191 ARHADA----EMTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVP----G 262 (371)
T ss_dssp C------------CTTCCCTTSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCC----C
T ss_pred cccccc----CcCCcccCccccCHHHhcCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCC----c
Confidence 986532 2334578999999998776 789999999999999999999999998764311 11111111000 0
Q ss_pred ccccch-----------hhcCCC----ccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1033 RAVIPV-----------VLLGSG----LAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1033 ~~~~~~-----------~~~~~~----~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
.+.... ...... ..........+.+++.+|++.||++||+++|+++
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 323 (371)
T 4exu_A 263 TEFVQKLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALT 323 (371)
T ss_dssp HHHHTTCSCHHHHHHHHHSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred HHHHHHhhhhhhhhhhhccCCCcchhHHHhccccChHHHHHHHHHCCCChhhcCCHHHHhc
Confidence 000000 000000 0001123467889999999999999999999975
No 275
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1.7e-34 Score=353.28 Aligned_cols=350 Identities=20% Similarity=0.191 Sum_probs=229.8
Q ss_pred cccccccCCCCCCcc----cCCceeCCCCceeEEeccccccccccccccccCCccCCeeeCCCCCCCCCcCccCCCCCCC
Q 001384 54 EGHYMQWNQSSSPCE----WPGIICSPDKARVNGLNLTDWNISGDIFNNFSALTQLSYLDLSRNTFSGSIPDDLSSCRSL 129 (1088)
Q Consensus 54 ~~~~~sW~~~~~~C~----W~gv~C~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 129 (1088)
+..+++|..+.+||. |.++.|+. ++ +-....... ...--.+++++.|++++|.++...+..++.+++|
T Consensus 6 ~~~l~~~~~~~~C~~~~~~~~c~~~~~---~i---~~~~~~~~~--~~~~l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L 77 (597)
T 3oja_B 6 RYNVKPRQPEYKCIDSNLQYDCVFYDV---HI---DMQTQDVYF--GFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 77 (597)
T ss_dssp -----CCCSEECCCCC--CCSEEECSC---EE---CSSCCCCEE--SCSSGGGCCCSEEEESSCEESEECTHHHHHCCCC
T ss_pred cccccCCCCCCcCcccCcCceeEecCc---ee---ccccccccc--CcccccCCCceEEEeeCCCCCCcCHHHHccCCCC
Confidence 346789998888885 66665542 21 111111111 1112246788999999999986555567889999
Q ss_pred cEEECccccccCcc--cCCCCCCCceeecccccccccccCchhhhcccceEEeccCccCCCCCCccccCCCCCcEEEccC
Q 001384 130 KYLNLSHNILSGDL--NLSGLRSLEILDLSVNRIHGEISFSFPAICEKLVVANLSLNNLTGRIDTCFDGCLNLRYLDLSS 207 (1088)
Q Consensus 130 ~~L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~ 207 (1088)
++|+|++|.+++.. .+.++++|++|+|++|.+++..+..| ..+++|++|+|++|++++.++..|.+++
T Consensus 78 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~l~~~~~~~l~--------- 147 (597)
T 3oja_B 78 ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF-QNVPLLTVLVLERNDLSSLPRGIFHNTP--------- 147 (597)
T ss_dssp SEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSCCCCCCTTTTTTCT---------
T ss_pred cEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHH-cCCCCCCEEEeeCCCCCCCCHHHhccCC---------
Confidence 99999999888644 57777777777777777765433322 2234444444444444444444444444
Q ss_pred ccccccccccCcccceecccCcccccccccccccCCCccCEEEcCCCcccccCcccccCCCCCcEEEccCccccCCCccc
Q 001384 208 NNFRGNIWNGLAQLVEFSVSENVLSGVVSSSVFKENCSLEIFDLSENEFIGDFPGEVSNCRNLVVLNLFGNNFSGPIPAE 287 (1088)
Q Consensus 208 N~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~ 287 (1088)
+|++|+|++|.+++..|..|.++++|++|+|++|.+++. .
T Consensus 148 -------------------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~ 187 (597)
T 3oja_B 148 -------------------------------------KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---D 187 (597)
T ss_dssp -------------------------------------TCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---C
T ss_pred -------------------------------------CCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---C
Confidence 444444444444444444455555555555555555432 1
Q ss_pred cCCCCCCCEEeCCCCcCCccCcccccCCCCCcEEEcCCCcCCCchhHhhhcccccceeecCcCcccCCCCCccccCCCCc
Q 001384 288 IGSISGLEALFLGKNNFLSVIPESLLNLSKLEVLDLSSNNFGGEVQKIFGRFTQVKILALHSNSYIDGMNSSGILKLPNI 367 (1088)
Q Consensus 288 ~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L 367 (1088)
++.+++|+.|++++|.+.+ +...++|+.|++++|.+....+.. .++|+.|++++|.+.+ ...+..+++|
T Consensus 188 ~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~---~~~l~~l~~L 256 (597)
T 3oja_B 188 LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD---TAWLLNYPGL 256 (597)
T ss_dssp GGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCC---CGGGGGCTTC
T ss_pred hhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCC---ChhhccCCCC
Confidence 3334455555555554443 122334555555555554433222 1345555555555433 2456678999
Q ss_pred CEEEccCCccCCCCCccccCCcCcceeeccccccCCcCCcccCCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEcccc
Q 001384 368 SRLDLSHNNFTGPLPVEISQMRSLKFLILAHNRFNGSIPAVYGNMPNLQTLDLSFNELTGPIPPSIGNLTSLLWLMLANN 447 (1088)
Q Consensus 368 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 447 (1088)
+.|+|++|.+++..|..|+.+++|+.|+|++|+++ .+|..+..+++|+.|+|++|+++ .+|..++.+++|++|+|++|
T Consensus 257 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N 334 (597)
T 3oja_B 257 VEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHN 334 (597)
T ss_dssp SEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCC-EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSS
T ss_pred CEEECCCCccCCCCHHHhcCccCCCEEECCCCCCC-CCCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCC
Confidence 99999999999999999999999999999999999 47888888999999999999999 68999999999999999999
Q ss_pred ccccCCCccccCCCCCCeEEccCCcCccCC
Q 001384 448 SLSGEIPGEIGNCTSLLWLNLSNNKLSGNI 477 (1088)
Q Consensus 448 ~l~~~~p~~l~~l~~L~~L~L~~N~l~g~i 477 (1088)
.+++ +| +..+++|+.|+|++|++++..
T Consensus 335 ~l~~-~~--~~~~~~L~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 335 SIVT-LK--LSTHHTLKNLTLSHNDWDCNS 361 (597)
T ss_dssp CCCC-CC--CCTTCCCSEEECCSSCEEHHH
T ss_pred CCCC-cC--hhhcCCCCEEEeeCCCCCChh
Confidence 9985 44 778899999999999998753
No 276
>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}
Probab=100.00 E-value=1.9e-34 Score=324.59 Aligned_cols=250 Identities=23% Similarity=0.380 Sum_probs=179.2
Q ss_pred CCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCccc-hHHHHHH-HHHHhCCCCCCCCCceeEEeeEEecCCeEE
Q 001384 805 GKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGLEG-EREFRAE-MEVLSGNGFGWPHPNLVTLYGWCLDGSEKI 881 (1088)
Q Consensus 805 ~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~-~~~~~~E-~~~l~~~~~~l~h~niv~l~~~~~~~~~~~ 881 (1088)
++|++.+.||+|+||.||+|+++ +|+.||||++....... ..+...| ..++.. ++||||+++++++.+++..+
T Consensus 25 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~----~~h~~i~~~~~~~~~~~~~~ 100 (318)
T 2dyl_A 25 NDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKS----HDCPYIVQCFGTFITNTDVF 100 (318)
T ss_dssp GGEEEEEEC------CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHT----TTCTTBCCEEEEEECSSEEE
T ss_pred ccccccceeeecCCeeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHHHh----cCCCceeeEEEEEecCCcEE
Confidence 56888999999999999999986 68999999997653322 2233333 344553 58999999999999999999
Q ss_pred EEEEecCCCCHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccceeecC
Q 001384 882 LVYEYMEGGSLEDIISD-RTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARVVSA 960 (1088)
Q Consensus 882 lv~e~~~~gsL~~~l~~-~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~~~ 960 (1088)
+||||+ ++.+..+... ...+++..++.++.|++.||+|||+++ +|+||||||+||+++.++.+||+|||++.....
T Consensus 101 lv~e~~-~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~--~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~ 177 (318)
T 2dyl_A 101 IAMELM-GTCAEKLKKRMQGPIPERILGKMTVAIVKALYYLKEKH--GVIHRDVKPSNILLDERGQIKLCDFGISGRLVD 177 (318)
T ss_dssp EEECCC-SEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHH--CCCCCCCCGGGEEECTTSCEEECCCTTC-----
T ss_pred EEEecc-CCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhhC--CEEeCCCCHHHEEECCCCCEEEEECCCchhccC
Confidence 999999 5566666544 467999999999999999999999832 899999999999999999999999999976543
Q ss_pred CCCcccccccccccccCccccC-----CCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCCCCCccc
Q 001384 961 GDSHVSTTIAGTVGYVAPEYGQ-----TWQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRHGPGRAV 1035 (1088)
Q Consensus 961 ~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1035 (1088)
.. ......+++.|+|||++. ...++.++||||||+++|||++|+.||.........+..........
T Consensus 178 ~~--~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~------ 249 (318)
T 2dyl_A 178 DK--AKDRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPYKNCKTDFEVLTKVLQEEPPL------ 249 (318)
T ss_dssp -----------CCTTCCHHHHC--------CCTHHHHHHHHHHHHHHHHSSCTTTTCCSHHHHHHHHHHSCCCC------
T ss_pred Cc--cccccCCCccccChhhcccccccccCCccccchhhHHHHHHHHHhCCCCCCCCCccHHHHHHHhccCCCC------
Confidence 22 233456899999999874 56789999999999999999999999987543322222222110000
Q ss_pred cchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1036 IPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1036 ~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
.+ .......++.+++.+|++.||.+||+++|+++
T Consensus 250 ~~---------~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~ 283 (318)
T 2dyl_A 250 LP---------GHMGFSGDFQSFVKDCLTKDHRKRPKYNKLLE 283 (318)
T ss_dssp CC---------SSSCCCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred CC---------ccCCCCHHHHHHHHHHccCChhHCcCHHHHhh
Confidence 00 01122356888999999999999999999875
No 277
>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A
Probab=100.00 E-value=6.6e-35 Score=336.34 Aligned_cols=267 Identities=19% Similarity=0.215 Sum_probs=198.2
Q ss_pred cCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCccchHHHHHHHHHHhCCCC-------CCCCCceeEEeeEEe
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGLEGEREFRAEMEVLSGNGF-------GWPHPNLVTLYGWCL 875 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~-------~l~h~niv~l~~~~~ 875 (1088)
.++|++.+.||+|+||+||+|++. +++.||||++... ......+.+|++++.++.. .+.||||+++++++.
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~ 96 (373)
T 1q8y_A 18 DARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGD-KVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFN 96 (373)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEE
T ss_pred CCeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecCC-ccchhhhhHHHHHHHHhhcccccchhccccchHHHHHHHhh
Confidence 357999999999999999999974 7899999999754 2334567788888775321 012899999999988
Q ss_pred cCC----eEEEEEEecCCCCHHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEc------C
Q 001384 876 DGS----EKILVYEYMEGGSLEDIISDR--TRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLD------K 943 (1088)
Q Consensus 876 ~~~----~~~lv~e~~~~gsL~~~l~~~--~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~------~ 943 (1088)
... ..++||||+ +++|.+++... ..+++..++.++.||+.||+|||+++ +|+||||||+||+++ .
T Consensus 97 ~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~--~ivH~Dikp~NIll~~~~~~~~ 173 (373)
T 1q8y_A 97 HKGPNGVHVVMVFEVL-GENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRC--GIIHTDIKPENVLMEIVDSPEN 173 (373)
T ss_dssp EEETTEEEEEEEECCC-CEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTT--CEECSCCSGGGEEEEEEETTTT
T ss_pred ccCCCCceEEEEEecC-CCCHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHhcC--CEEecCCChHHeEEeccCCCcC
Confidence 654 789999999 88999999763 45999999999999999999999963 899999999999995 3
Q ss_pred CCCEEEeecccceeecCCCCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchh--------
Q 001384 944 EGKALVTDFGLARVVSAGDSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEEC-------- 1015 (1088)
Q Consensus 944 ~~~~kl~Dfg~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~-------- 1015 (1088)
.+.+||+|||+++..... .....||+.|+|||++.+..++.++|||||||++|||++|+.||.+....
T Consensus 174 ~~~~kl~Dfg~a~~~~~~----~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~ 249 (373)
T 1q8y_A 174 LIQIKIADLGNACWYDEH----YTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDDDH 249 (373)
T ss_dssp EEEEEECCCTTCEETTBC----CCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC---------CHHHH
T ss_pred cceEEEcccccccccCCC----CCCCCCCccccCcHHHhCCCCCchHhHHHHHHHHHHHHhCCCCCCCCcccccCChHHH
Confidence 447999999999876432 23357899999999999989999999999999999999999999864310
Q ss_pred HHHHHHhhhcc---------------CCCCCCccc------cchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHH
Q 001384 1016 LVEWGRRVMGY---------------GRHGPGRAV------IPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVK 1074 (1088)
Q Consensus 1016 ~~~~~~~~~~~---------------~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~ 1074 (1088)
........... ......... ............+.....++.+++.+|++.||++||+++
T Consensus 250 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ 329 (373)
T 1q8y_A 250 IAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAG 329 (373)
T ss_dssp HHHHHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCBCHH
T ss_pred HHHHHHhcCCCCHHHHhccchhhhhcCCcchhcccccccccchhhhhhhcccCCcchHHHHHHHHHHHhccCccccCCHH
Confidence 11111000000 000000000 000000111123466778999999999999999999999
Q ss_pred HHHH
Q 001384 1075 EVLA 1078 (1088)
Q Consensus 1075 eil~ 1078 (1088)
|+++
T Consensus 330 ell~ 333 (373)
T 1q8y_A 330 GLVN 333 (373)
T ss_dssp HHHT
T ss_pred HHhh
Confidence 9986
No 278
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=4.5e-34 Score=340.76 Aligned_cols=321 Identities=23% Similarity=0.242 Sum_probs=218.3
Q ss_pred CeeeCCCCCCCCCcCccCCCCCCCcEEECccccccCcc--cCCCCCCCceeecccccccccccCchhhhcccceEEeccC
Q 001384 106 SYLDLSRNTFSGSIPDDLSSCRSLKYLNLSHNILSGDL--NLSGLRSLEILDLSVNRIHGEISFSFPAICEKLVVANLSL 183 (1088)
Q Consensus 106 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~L~~ 183 (1088)
+.++.++++++ .+|..+. ++|++|+|++|.+++.. .+.++++|++|+|++|.+++..|..|. .+++|++|+|++
T Consensus 14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~L~~ 89 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFN-NLFNLRTLGLRS 89 (477)
T ss_dssp TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECCS
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhh-CCccCCEEECCC
Confidence 46888888888 6777653 57888888888887643 477777777777777777654444332 224444444444
Q ss_pred ccCCCCCCccccCCCCCcEEEccCccccccccccCcccceecccCcccccccccccccCCCccCEEEcCCCcccccCccc
Q 001384 184 NNLTGRIDTCFDGCLNLRYLDLSSNNFRGNIWNGLAQLVEFSVSENVLSGVVSSSVFKENCSLEIFDLSENEFIGDFPGE 263 (1088)
Q Consensus 184 n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~ 263 (1088)
|++++..+..|.++++|+ +|+|++|++++..|..
T Consensus 90 n~l~~~~~~~~~~l~~L~----------------------------------------------~L~Ls~n~i~~~~~~~ 123 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLT----------------------------------------------KLDISENKIVILLDYM 123 (477)
T ss_dssp SCCCSCCTTSSTTCTTCC----------------------------------------------EEECTTSCCCEECTTT
T ss_pred CcCCccCcccccCCCCCC----------------------------------------------EEECCCCccccCChhH
Confidence 444444444444444444 4444444444444444
Q ss_pred ccCCCCCcEEEccCccccCCCccccCCCCCCCEEeCCCCcCCccCcccccCCCCCcEEEcCCCcCCCchhHhhhcccccc
Q 001384 264 VSNCRNLVVLNLFGNNFSGPIPAEIGSISGLEALFLGKNNFLSVIPESLLNLSKLEVLDLSSNNFGGEVQKIFGRFTQVK 343 (1088)
Q Consensus 264 l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 343 (1088)
|.++++|++|+|++|.+.+..+..|..+++|+.|+|++|++++..+..+.++++|+.|+|++|.+.+..+..|..+++|+
T Consensus 124 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~ 203 (477)
T 2id5_A 124 FQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLK 203 (477)
T ss_dssp TTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCC
T ss_pred ccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccc
Confidence 55555555555555555544444455555555555555555544444455555555555555555555444555555555
Q ss_pred eeecCcCcccCCCCCccccCCCCcCEEEccCCccCCCCCccccCCcCcceeeccccccCCcCCcccCCCCCCcEEEccCC
Q 001384 344 ILALHSNSYIDGMNSSGILKLPNISRLDLSHNNFTGPLPVEISQMRSLKFLILAHNRFNGSIPAVYGNMPNLQTLDLSFN 423 (1088)
Q Consensus 344 ~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 423 (1088)
.|++++|..........+ ...+|++|+|++|++++..+..+..+++|+.|+|++|++++..+..|..+++|+.|+|++|
T Consensus 204 ~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 282 (477)
T 2id5_A 204 VLEISHWPYLDTMTPNCL-YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGG 282 (477)
T ss_dssp EEEEECCTTCCEECTTTT-TTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSS
T ss_pred eeeCCCCccccccCcccc-cCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCC
Confidence 555555544443333332 3348999999999999655567899999999999999999888888999999999999999
Q ss_pred cCCCCCCccccCCCCCcEEEccccccccCCCccccCCCCCCeEEccCCcCccCC
Q 001384 424 ELTGPIPPSIGNLTSLLWLMLANNSLSGEIPGEIGNCTSLLWLNLSNNKLSGNI 477 (1088)
Q Consensus 424 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~i 477 (1088)
++++..|..+.++++|++|+|++|++++..+..|..+++|++|+|++|++++..
T Consensus 283 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c 336 (477)
T 2id5_A 283 QLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDC 336 (477)
T ss_dssp CCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSG
T ss_pred ccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCcc
Confidence 999988999999999999999999999766777899999999999999998653
No 279
>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*
Probab=100.00 E-value=3e-34 Score=328.31 Aligned_cols=266 Identities=22% Similarity=0.251 Sum_probs=198.8
Q ss_pred cCCCCccceecccCceEEEEEEeC-CC-cEEEEEEccccCccchHHHHHHHHHHhCCCC--CCCCCceeEEeeEEecCCe
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLP-DG-REVAVKKLQREGLEGEREFRAEMEVLSGNGF--GWPHPNLVTLYGWCLDGSE 879 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~-~~-~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~--~l~h~niv~l~~~~~~~~~ 879 (1088)
.++|++.+.||+|+||+||+|.+. ++ +.||||++... ......+..|+++++.+.. ...|.+++.+++++...+.
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 96 (355)
T 2eu9_A 18 QERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNV-GKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGH 96 (355)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEETTE
T ss_pred cccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEccc-ccchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeeeCCe
Confidence 468999999999999999999975 34 68999999754 2334567788888776320 1233449999999999999
Q ss_pred EEEEEEecCCCCHHHHHhhcC--CCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEE----------------
Q 001384 880 KILVYEYMEGGSLEDIISDRT--RLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLL---------------- 941 (1088)
Q Consensus 880 ~~lv~e~~~~gsL~~~l~~~~--~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll---------------- 941 (1088)
.++||||+ ++++.+++.... ++++.+++.++.||+.||+|||++ +|+||||||+||++
T Consensus 97 ~~lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~lH~~---~ivH~Dlkp~NIll~~~~~~~~~~~~~~~~ 172 (355)
T 2eu9_A 97 MCIAFELL-GKNTFEFLKENNFQPYPLPHVRHMAYQLCHALRFLHEN---QLTHTDLKPENILFVNSEFETLYNEHKSCE 172 (355)
T ss_dssp EEEEEECC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEESCCCEEEEECCC-CCC
T ss_pred EEEEEecc-CCChHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEeccccccccccccccc
Confidence 99999999 567777776543 699999999999999999999999 99999999999999
Q ss_pred ---cCCCCEEEeecccceeecCCCCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchh-HH
Q 001384 942 ---DKEGKALVTDFGLARVVSAGDSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEEC-LV 1017 (1088)
Q Consensus 942 ---~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~-~~ 1017 (1088)
+.++.+||+|||+++..... .....||+.|+|||++.+..++.++||||+|+++|||++|+.||...... ..
T Consensus 173 ~~~~~~~~~kl~Dfg~~~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~ 248 (355)
T 2eu9_A 173 EKSVKNTSIRVADFGSATFDHEH----HTTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYRGFTLFQTHENREHL 248 (355)
T ss_dssp EEEESCCCEEECCCTTCEETTSC----CCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHH
T ss_pred ccccCCCcEEEeecCcccccccc----ccCCcCCCcccCCeeeecCCCCCccchHHHHHHHHHHHhCCCCCCCCCHHHHH
Confidence 67889999999999864322 23457899999999999889999999999999999999999999876442 11
Q ss_pred HHHHhhhc-cCC-----CCCC------ccccch----------hh--cCCCccccHHHHHHHHHHHhhhcccCCCCCCCH
Q 001384 1018 EWGRRVMG-YGR-----HGPG------RAVIPV----------VL--LGSGLAEGAEEMSELLRIGVRCTAEAPNARPNV 1073 (1088)
Q Consensus 1018 ~~~~~~~~-~~~-----~~~~------~~~~~~----------~~--~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~ 1073 (1088)
........ ... .... ....+. .. .............++.+++.+|++.||++||++
T Consensus 249 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~ 328 (355)
T 2eu9_A 249 VMMEKILGPIPSHMIHRTRKQKYFYKGGLVWDENSSDGRYVKENCKPLKSYMLQDSLEHVQLFDLMRRMLEFDPAQRITL 328 (355)
T ss_dssp HHHHHHHCCCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCCH
T ss_pred HHHHHHcCCCcHHHhhhccchhhhcccccccccccchhccccccCCcccccccccchhHHHHHHHHHHHhcCChhhCcCH
Confidence 11111110 000 0000 000000 00 000001123445688999999999999999999
Q ss_pred HHHHH
Q 001384 1074 KEVLA 1078 (1088)
Q Consensus 1074 ~eil~ 1078 (1088)
+|+++
T Consensus 329 ~e~l~ 333 (355)
T 2eu9_A 329 AEALL 333 (355)
T ss_dssp HHHTT
T ss_pred HHHhc
Confidence 99974
No 280
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=100.00 E-value=4.8e-35 Score=351.39 Aligned_cols=271 Identities=26% Similarity=0.367 Sum_probs=205.0
Q ss_pred cCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccC-ccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEec-----
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREG-LEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLD----- 876 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~----- 876 (1088)
.++|++.+.||+|+||.||+|.+. +|+.||||++.... ....+.+.+|++++.+ ++||||+++++++..
T Consensus 13 ~grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL~~----L~HpnIV~l~~v~~~~~~~~ 88 (676)
T 3qa8_A 13 CGPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKK----LNHPNVVSAREVPDGLQKLA 88 (676)
T ss_dssp ----CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCCCHHHHHHHHHHHHHHHH----CCBTTBCCEEECCTTTCCCC
T ss_pred CCCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccCCHHHHHHHHHHHHHHHh----CCCCCCCceeeeeccccccc
Confidence 368999999999999999999975 68999999987642 2334578899999997 679999999998765
Q ss_pred -CCeEEEEEEecCCCCHHHHHhhcC---CCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCC---EEE
Q 001384 877 -GSEKILVYEYMEGGSLEDIISDRT---RLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGK---ALV 949 (1088)
Q Consensus 877 -~~~~~lv~e~~~~gsL~~~l~~~~---~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~---~kl 949 (1088)
++..++||||+++|+|.+++.... .+++..++.++.|++.||+|||+. +|+||||||+||+++.++. +||
T Consensus 89 ~~~~~~LVmEy~~ggsL~~~L~~~~~~~~lse~~i~~I~~QLl~aL~yLHs~---gIVHrDLKP~NILl~~~g~~~~vKL 165 (676)
T 3qa8_A 89 PNDLPLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLHEN---RIIHRDLKPENIVLQPGPQRLIHKI 165 (676)
T ss_dssp TTSSCCCEEECCSSCBHHHHHHSSSCTTCCCSSHHHHHHHHHHHHHHHHHHT---TBCCCCCCSTTEEEECCSSSCEEEE
T ss_pred CCCeEEEEEEeCCCCCHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCCHHHeEeecCCCceeEEE
Confidence 677899999999999999998754 589999999999999999999999 9999999999999997765 999
Q ss_pred eecccceeecCCCCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccC--
Q 001384 950 TDFGLARVVSAGDSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYG-- 1027 (1088)
Q Consensus 950 ~Dfg~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~-- 1027 (1088)
+|||.+....... ......||+.|+|||.+.+..++.++||||+|+++|+|++|+.||.+... ...|........
T Consensus 166 ~DFG~a~~~~~~~--~~~~~~gt~~Y~APE~l~~~~~s~ksDIwSLGviLyeLltG~~Pf~~~~~-~~~~~~~i~~~~~~ 242 (676)
T 3qa8_A 166 IDLGYAKELDQGE--LCTEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPFLPNWQ-PVQWHGKVREKSNE 242 (676)
T ss_dssp CSCCCCCBTTSCC--CCCCCCSCCTTCSSCSSCCSCCSTTHHHHHHHHHHHHHHSSCSSCCSSCH-HHHSSTTCC-----
T ss_pred ccccccccccccc--ccccccCCcccCChHHhccCCCCchhHHHHHHHHHHHHHHCCCCCCcccc-hhhhhhhhhcccch
Confidence 9999998765332 23456789999999999999999999999999999999999999976432 222322111000
Q ss_pred -----CCCCCccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHH-----HHHHHHhhCC
Q 001384 1028 -----RHGPGRAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKE-----VLAMLIKILP 1085 (1088)
Q Consensus 1028 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~e-----il~~L~~i~~ 1085 (1088)
........... ...............+.+++.+|++.||++||+++| +.+.++++++
T Consensus 243 ~~~~~~~l~g~~~~~~-~lp~p~~l~~~ls~~L~dLI~~mL~~DP~kRPTa~elL~hp~F~~l~~iL~ 309 (676)
T 3qa8_A 243 HIVVYDDLTGAVKFSS-VLPTPNHLSGILAGKLERWLQCMLMWHQRQRGTDPQNPNVGCFQALDSILS 309 (676)
T ss_dssp -CCSCCCCSSSCCCCS-SSCCSCCCCGGGHHHHHHHHHHHSCSSCC---CCTTCCCCTTHHHHHHHHC
T ss_pred hhhhhhhhcccccccc-ccCCchhhchhhhHHHHHHHHHHccCCHhhCcCHHHHhcCHHHHHHHHHHh
Confidence 00000000000 001111123446678999999999999999999988 5666666653
No 281
>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}
Probab=100.00 E-value=8.8e-35 Score=332.37 Aligned_cols=261 Identities=21% Similarity=0.267 Sum_probs=195.2
Q ss_pred cCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCcc--chHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCe-
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGLE--GEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSE- 879 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~--~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~- 879 (1088)
.++|.+.+.||+|+||.||+|+++ +|+.||||++...... ..+.+.+|+.+++. ++||||+++++++.....
T Consensus 23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~----l~h~~iv~~~~~~~~~~~~ 98 (353)
T 3coi_A 23 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKH----MQHENVIGLLDVFTPASSL 98 (353)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHH----CCCTTBCCCSEEECSCSSG
T ss_pred CceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHHh----cCCCCcccHhheEeccccc
Confidence 367899999999999999999975 6899999999764322 23568899999987 679999999999987654
Q ss_pred -----EEEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeeccc
Q 001384 880 -----KILVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGL 954 (1088)
Q Consensus 880 -----~~lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~ 954 (1088)
.++||||++ ++|.+++.. ++++.+++.++.||+.||+|||++ +|+||||||+||+++.++.+||+|||+
T Consensus 99 ~~~~~~~lv~e~~~-~~l~~~~~~--~~~~~~~~~i~~qi~~al~~LH~~---~ivH~dlkp~NIl~~~~~~~kl~Dfg~ 172 (353)
T 3coi_A 99 RNFYDFYLVMPFMQ-TDLQKIMGL--KFSEEKIQYLVYQMLKGLKYIHSA---GVVHRDLKPGNLAVNEDCELKILDFGL 172 (353)
T ss_dssp GGCCCCEEEEECCS-EEGGGTTTS--CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCCGGGEEECTTCCEEECSTTC
T ss_pred ccceeEEEEecccc-CCHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEeECCCCcEEEeeccc
Confidence 499999997 588887753 489999999999999999999999 999999999999999999999999999
Q ss_pred ceeecCCCCcccccccccccccCccccCC-CCCCcchhHHHHHHHHHHHHhCCcCCCCCchhH-HHHHHhhhccCCC---
Q 001384 955 ARVVSAGDSHVSTTIAGTVGYVAPEYGQT-WQATTKGDVYSFGVLAMELATGRRALEGGEECL-VEWGRRVMGYGRH--- 1029 (1088)
Q Consensus 955 a~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~-~~~~~~~~~~~~~--- 1029 (1088)
++..... .....+|+.|+|||++.+ ..++.++||||+|+++|+|++|+.||.+..... .............
T Consensus 173 ~~~~~~~----~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~ 248 (353)
T 3coi_A 173 ARHADAE----MTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPGTEFV 248 (353)
T ss_dssp TTC------------CCSBCCSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSSBSSCHHHHHHHHHHHHCBCCHHHH
T ss_pred ccCCCCC----ccccccCcCcCCHHHHhCcCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHH
Confidence 9765321 234578999999998776 688999999999999999999999998764311 1111110000000
Q ss_pred CCC-cc-------ccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1030 GPG-RA-------VIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1030 ~~~-~~-------~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
... .. ..+................++.+++.+|++.||++||+++|+++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~Rpt~~e~l~ 305 (353)
T 3coi_A 249 QKLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALT 305 (353)
T ss_dssp TTCSCHHHHHHHHTSCBCSSCCTTTTCTTSCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred HHHhhHHHHHHHHhCcCCCCccHHHhcCCcCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence 000 00 00000000000112234567889999999999999999999975
No 282
>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.9e-34 Score=336.98 Aligned_cols=248 Identities=23% Similarity=0.330 Sum_probs=187.3
Q ss_pred CCCCccceecccCceEEEEEEeCCCcEEEEEEccccCccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeEEEEE
Q 001384 805 GKFSEDRIIGKGGFGTVYRGVLPDGREVAVKKLQREGLEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEKILVY 884 (1088)
Q Consensus 805 ~~~~~~~~LG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~~lv~ 884 (1088)
.+|+..++||+|+||+||.....+++.||||++...... .+.+|+++++... +|||||++++++.+....|+||
T Consensus 24 ~~y~~~~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~~~~---~~~~E~~~l~~l~---~HpnIv~l~~~~~~~~~~~lv~ 97 (432)
T 3p23_A 24 ISFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPECFS---FADREVQLLRESD---EHPNVIRYFCTEKDRQFQYIAI 97 (432)
T ss_dssp EEEEEEEEEEECGGGCEEEEEESSSSEEEEEEECTTTEE---ECHHHHHHHHHSC---CCTTBCCEEEEEEETTEEEEEE
T ss_pred EEEecCCeeecCcCEEEEEEEEeCCeEEEEEEECHHHHH---HHHHHHHHHHhcc---CCCCcCeEEEEEecCCEEEEEE
Confidence 358888999999999976555567999999999765332 3467888888632 7999999999999999999999
Q ss_pred EecCCCCHHHHHhhcC-CCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcC-----CCCEEEeecccceee
Q 001384 885 EYMEGGSLEDIISDRT-RLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDK-----EGKALVTDFGLARVV 958 (1088)
Q Consensus 885 e~~~~gsL~~~l~~~~-~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~-----~~~~kl~Dfg~a~~~ 958 (1088)
||++ |+|.+++.... ...+.+++.++.||+.||+|||++ +|+||||||+||+++. ...+||+|||+++..
T Consensus 98 E~~~-g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlKp~NIll~~~~~~~~~~~kL~DFG~a~~~ 173 (432)
T 3p23_A 98 ELCA-ATLQEYVEQKDFAHLGLEPITLLQQTTSGLAHLHSL---NIVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKL 173 (432)
T ss_dssp ECCS-EEHHHHHHSSSCCCCSSCHHHHHHHHHHHHHHHHHT---TCCCCCCSTTSEEECCCBTTTBCCEEECCTTEEECC
T ss_pred ECCC-CCHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHC---cCEeCCCCHHHEEEecCCCCCceeEEEecccceeec
Confidence 9996 59999997654 456667789999999999999999 9999999999999953 336889999999876
Q ss_pred cCCCC--cccccccccccccCccccC---CCCCCcchhHHHHHHHHHHHHh-CCcCCCCCchhHHHHHHhhhccCCCCCC
Q 001384 959 SAGDS--HVSTTIAGTVGYVAPEYGQ---TWQATTKGDVYSFGVLAMELAT-GRRALEGGEECLVEWGRRVMGYGRHGPG 1032 (1088)
Q Consensus 959 ~~~~~--~~~~~~~gt~~y~aPE~~~---~~~~~~~~DvwslG~~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~ 1032 (1088)
..... .......||+.|+|||++. ...++.++||||+||++|||++ |..||............... .
T Consensus 174 ~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~t~~~DiwSlG~il~ellt~g~~pf~~~~~~~~~~~~~~~------~- 246 (432)
T 3p23_A 174 AVGRHSFSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKSLQRQANILLGAC------S- 246 (432)
T ss_dssp ------------CCSCTTSCCGGGTSCC---CCCTHHHHHHHHHHHHHHHTTSCBTTBSTTTHHHHHHTTCC------C-
T ss_pred cCCCcceeeccccCCCcCccChhhhhcccccCCCcHHHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHhccC------C-
Confidence 53321 2234467999999999887 4577889999999999999999 99999654332211111000 0
Q ss_pred ccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1033 RAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1033 ~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
.. ...........+.+++.+|++.||.+||+++||++
T Consensus 247 ~~---------~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~evl~ 283 (432)
T 3p23_A 247 LD---------CLHPEKHEDVIARELIEKMIAMDPQKRPSAKHVLK 283 (432)
T ss_dssp CT---------TSCTTCHHHHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred cc---------ccCccccccHHHHHHHHHHHhCCHhhCCCHHHHHh
Confidence 00 00012234456788999999999999999999983
No 283
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1e-33 Score=328.28 Aligned_cols=316 Identities=19% Similarity=0.182 Sum_probs=177.0
Q ss_pred cccccccCCCccCEEEcCCCcccccCcccccCCCCCcEEEccCccccCCCccccCCCCCCCEEeCCCCcCCccCcccccC
Q 001384 235 VSSSVFKENCSLEIFDLSENEFIGDFPGEVSNCRNLVVLNLFGNNFSGPIPAEIGSISGLEALFLGKNNFLSVIPESLLN 314 (1088)
Q Consensus 235 ~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~ 314 (1088)
++...|..+++|++|+|++|++++..+..|..+++|++|+|++|.+++..|..|+.+++|++|+|++|.++...+..|.+
T Consensus 60 l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~ 139 (390)
T 3o6n_A 60 LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHN 139 (390)
T ss_dssp ECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcC
Confidence 34455566667777777777776666667777777777777777777666666777777777777777776544444567
Q ss_pred CCCCcEEEcCCCcCCCchhHhhhcccccceeecCcCcccCCCCCccccCCCCcCEEEccCCccCCCCCccccCCcCccee
Q 001384 315 LSKLEVLDLSSNNFGGEVQKIFGRFTQVKILALHSNSYIDGMNSSGILKLPNISRLDLSHNNFTGPLPVEISQMRSLKFL 394 (1088)
Q Consensus 315 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 394 (1088)
+++|++|+|++|.+++..+..|+.+++|+.|++++|.+... .+..+++|+.|++++|.+++ +...++|+.|
T Consensus 140 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L 210 (390)
T 3o6n_A 140 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV----DLSLIPSLFHANVSYNLLST-----LAIPIAVEEL 210 (390)
T ss_dssp CTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC----CGGGCTTCSEEECCSSCCSE-----EECCSSCSEE
T ss_pred CCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc----ccccccccceeecccccccc-----cCCCCcceEE
Confidence 77777777777777666555555444444444444443221 12334444455555444432 1222344444
Q ss_pred eccccccCCcCCcccCCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEccccccccCCCccccCCCCCCeEEccCCcCc
Q 001384 395 ILAHNRFNGSIPAVYGNMPNLQTLDLSFNELTGPIPPSIGNLTSLLWLMLANNSLSGEIPGEIGNCTSLLWLNLSNNKLS 474 (1088)
Q Consensus 395 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 474 (1088)
++++|+++. +|.. ..++|+.|++++|++++. +.++++++|++|+|++|.+++..|..+.++++|++|+|++|+++
T Consensus 211 ~l~~n~l~~-~~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 285 (390)
T 3o6n_A 211 DASHNSINV-VRGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV 285 (390)
T ss_dssp ECCSSCCCE-EECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC
T ss_pred ECCCCeeee-cccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc
Confidence 444444442 2221 123444444444444421 23444444444444444444433444444444444444444433
Q ss_pred cCCCchhhccCCCCCccccccccCCcccccCCccccccccccCCCCCCCcceeeehhccccchhhhhcccCCcccccccC
Q 001384 475 GNIPPEVMTIGRNARPTFEANQRNGERTIAGSSECLSMKRWIPADYPPFSFVYTILTRKSCRSLWDRLLKGTGIFPVCLP 554 (1088)
Q Consensus 475 g~ip~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~ 554 (1088)
T Consensus 286 -------------------------------------------------------------------------------- 285 (390)
T 3o6n_A 286 -------------------------------------------------------------------------------- 285 (390)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccceeeeceEEccCCccccccCcccccCCCccEEeccccccccCCCCcccCccceEEEccCCcccccCCccccCCcc
Q 001384 555 GLASRTFQITGYLQLSGNQLSGELSPDIGKLQNFSMVHLGFNQFDGKLPSQFDQLPLIVLNLTRNNFSGEIPSEFGNIKC 634 (1088)
Q Consensus 555 ~~~~~~~~~l~~L~l~~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~l~l~~l~l~~N~l~~~~p~~~~~l~~ 634 (1088)
+ +|..++.+++|++|+|++|+ ++ .+|..++.+++
T Consensus 286 ---------------------~-~~~~~~~l~~L~~L~L~~n~-----------------------l~-~~~~~~~~l~~ 319 (390)
T 3o6n_A 286 ---------------------A-LNLYGQPIPTLKVLDLSHNH-----------------------LL-HVERNQPQFDR 319 (390)
T ss_dssp ---------------------E-EECSSSCCTTCCEEECCSSC-----------------------CC-CCGGGHHHHTT
T ss_pred ---------------------c-cCcccCCCCCCCEEECCCCc-----------------------ce-ecCccccccCc
Confidence 1 22223334444444444444 44 56777778888
Q ss_pred CcEEEccccccCCcCCcccccccccceeeccCCCCccccCCCCCcccccccCccCCCCCCC
Q 001384 635 LQNLDLSYNNFSGPFPASFNNLTELSKLNISYNPLVSGTIPSTGQLATFEKTSYLGDPLLD 695 (1088)
Q Consensus 635 L~~L~l~~N~l~g~~p~~~~~l~~L~~l~l~~N~l~~g~ip~~~~~~~~~~~~~~~n~~~~ 695 (1088)
|+.|+|++|+|+ .+| +..+++|+.|++++|++.+... ...+..+....+.+++..|
T Consensus 320 L~~L~L~~N~i~-~~~--~~~~~~L~~L~l~~N~~~~~~~--~~~~~~~~~~~~~~~~~~c 375 (390)
T 3o6n_A 320 LENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDCNSL--RALFRNVARPAVDDADQHC 375 (390)
T ss_dssp CSEEECCSSCCC-CCC--CCTTCCCSEEECCSSCEEHHHH--HHHTTTCCTTTBCCCCSCC
T ss_pred CCEEECCCCccc-eeC--chhhccCCEEEcCCCCccchhH--HHHHHHHHhhcccccCcee
Confidence 888888888887 444 6778888999999998854322 1234455556667777666
No 284
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1.5e-33 Score=344.95 Aligned_cols=316 Identities=19% Similarity=0.186 Sum_probs=183.9
Q ss_pred cccccccCCCccCEEEcCCCcccccCcccccCCCCCcEEEccCccccCCCccccCCCCCCCEEeCCCCcCCccCcccccC
Q 001384 235 VSSSVFKENCSLEIFDLSENEFIGDFPGEVSNCRNLVVLNLFGNNFSGPIPAEIGSISGLEALFLGKNNFLSVIPESLLN 314 (1088)
Q Consensus 235 ~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~ 314 (1088)
++...|..+++|++|+|++|.+++..|..|..+++|++|+|++|.+++..|..|+.+++|++|+|++|.+++..+..|++
T Consensus 66 lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~ 145 (597)
T 3oja_B 66 LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHN 145 (597)
T ss_dssp ECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred cCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhcc
Confidence 44455666667777777777777666667777777777777777777666666677777777777777777655555677
Q ss_pred CCCCcEEEcCCCcCCCchhHhhhcccccceeecCcCcccCCCCCccccCCCCcCEEEccCCccCCCCCccccCCcCccee
Q 001384 315 LSKLEVLDLSSNNFGGEVQKIFGRFTQVKILALHSNSYIDGMNSSGILKLPNISRLDLSHNNFTGPLPVEISQMRSLKFL 394 (1088)
Q Consensus 315 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 394 (1088)
+++|++|+|++|.+++.++..|+.+++|+.|+++ +|.+++. .++.+++|+.|
T Consensus 146 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~-------------------------~N~l~~~---~~~~l~~L~~L 197 (597)
T 3oja_B 146 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS-------------------------SNRLTHV---DLSLIPSLFHA 197 (597)
T ss_dssp CTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECT-------------------------TSCCSBC---CGGGCTTCSEE
T ss_pred CCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECc-------------------------CCCCCCc---Chhhhhhhhhh
Confidence 7777777777777776666555554444444444 4444432 13334444555
Q ss_pred eccccccCCcCCcccCCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEccccccccCCCccccCCCCCCeEEccCCcCc
Q 001384 395 ILAHNRFNGSIPAVYGNMPNLQTLDLSFNELTGPIPPSIGNLTSLLWLMLANNSLSGEIPGEIGNCTSLLWLNLSNNKLS 474 (1088)
Q Consensus 395 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 474 (1088)
++++|.+++ +...++|+.|++++|.++. +|..+ .++|+.|+|++|.+++ +..++.+++|+.|+|++|.++
T Consensus 198 ~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~-~~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~ 267 (597)
T 3oja_B 198 NVSYNLLST-----LAIPIAVEELDASHNSINV-VRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELE 267 (597)
T ss_dssp ECCSSCCSE-----EECCTTCSEEECCSSCCCE-EECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCC
T ss_pred hcccCcccc-----ccCCchhheeeccCCcccc-ccccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccC
Confidence 555554442 1123345555555555542 22222 1355555555555553 244555555555555555554
Q ss_pred cCCCchhhccCCCCCccccccccCCcccccCCccccccccccCCCCCCCcceeeehhccccchhhhhcccCCcccccccC
Q 001384 475 GNIPPEVMTIGRNARPTFEANQRNGERTIAGSSECLSMKRWIPADYPPFSFVYTILTRKSCRSLWDRLLKGTGIFPVCLP 554 (1088)
Q Consensus 475 g~ip~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~ 554 (1088)
+.+|..
T Consensus 268 ~~~~~~-------------------------------------------------------------------------- 273 (597)
T 3oja_B 268 KIMYHP-------------------------------------------------------------------------- 273 (597)
T ss_dssp EEESGG--------------------------------------------------------------------------
T ss_pred CCCHHH--------------------------------------------------------------------------
Confidence 332222
Q ss_pred CCcccceeeeceEEccCCccccccCcccccCCCccEEeccccccccCCCCcccCc-cceEEEccCCcccccCCccccCCc
Q 001384 555 GLASRTFQITGYLQLSGNQLSGELSPDIGKLQNFSMVHLGFNQFDGKLPSQFDQL-PLIVLNLTRNNFSGEIPSEFGNIK 633 (1088)
Q Consensus 555 ~~~~~~~~~l~~L~l~~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~l-~l~~l~l~~N~l~~~~p~~~~~l~ 633 (1088)
++.+++|+.|+|++|++++ +|..++.+ .|+.|+|++|+++ .+|..++.++
T Consensus 274 ---------------------------~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~ 324 (597)
T 3oja_B 274 ---------------------------FVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFD 324 (597)
T ss_dssp ---------------------------GTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHT
T ss_pred ---------------------------hcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCC
Confidence 1122222233333333322 12222222 2444444445454 6777888888
Q ss_pred cCcEEEccccccCCcCCcccccccccceeeccCCCCccccCCCCCcccccccCccCCCCCCCC
Q 001384 634 CLQNLDLSYNNFSGPFPASFNNLTELSKLNISYNPLVSGTIPSTGQLATFEKTSYLGDPLLDL 696 (1088)
Q Consensus 634 ~L~~L~l~~N~l~g~~p~~~~~l~~L~~l~l~~N~l~~g~ip~~~~~~~~~~~~~~~n~~~~~ 696 (1088)
+|+.|+|++|+|++ +| +..+++|+.|++++|+|.+... ...+..+....+.+++..|.
T Consensus 325 ~L~~L~L~~N~l~~-~~--~~~~~~L~~L~l~~N~~~~~~~--~~~~~~~~~~~~~~~~~~C~ 382 (597)
T 3oja_B 325 RLENLYLDHNSIVT-LK--LSTHHTLKNLTLSHNDWDCNSL--RALFRNVARPAVDDADQHCK 382 (597)
T ss_dssp TCSEEECCSSCCCC-CC--CCTTCCCSEEECCSSCEEHHHH--HHHTTTCCTTTBCCCCCCCC
T ss_pred CCCEEECCCCCCCC-cC--hhhcCCCCEEEeeCCCCCChhH--HHHHHHHhhhccccccccCC
Confidence 99999999999984 44 6778899999999999954332 23456667777888888884
No 285
>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A
Probab=100.00 E-value=6.4e-34 Score=314.25 Aligned_cols=231 Identities=14% Similarity=0.136 Sum_probs=184.4
Q ss_pred cCCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCccc---hHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCe
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGLEG---EREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSE 879 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~---~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~ 879 (1088)
.++|++.+.||+|+||.||+|++. +++.||||++....... .+.+.+|+..+.+ +.||||+++++++.+++.
T Consensus 30 ~~~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~----l~hp~iv~~~~~~~~~~~ 105 (286)
T 3uqc_A 30 NGRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSR----IDKPGVARVLDVVHTRAG 105 (286)
T ss_dssp TTTEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHT----CCCTTBCCEEEEEEETTE
T ss_pred cCcEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhc----CCCCCcceeeEEEEECCc
Confidence 367999999999999999999986 58999999998754332 2678899999886 689999999999999999
Q ss_pred EEEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccceeec
Q 001384 880 KILVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARVVS 959 (1088)
Q Consensus 880 ~~lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~~ 959 (1088)
.|+||||++|++|.++++.. ....++.+++.|++.||+|||++ +|+||||||+||+++.++.+||+++|
T Consensus 106 ~~lv~e~~~g~~L~~~l~~~--~~~~~~~~i~~ql~~aL~~lH~~---givH~Dikp~NIll~~~g~~kl~~~~------ 174 (286)
T 3uqc_A 106 GLVVAEWIRGGSLQEVADTS--PSPVGAIRAMQSLAAAADAAHRA---GVALSIDHPSRVRVSIDGDVVLAYPA------ 174 (286)
T ss_dssp EEEEEECCCEEEHHHHHTTC--CCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEEETTSCEEECSCC------
T ss_pred EEEEEEecCCCCHHHHHhcC--CChHHHHHHHHHHHHHHHHHHHC---CCccCCCCcccEEEcCCCCEEEEecc------
Confidence 99999999999999999653 46668899999999999999999 99999999999999999999998543
Q ss_pred CCCCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhH-HHHHHhhhccCCCCCCccccch
Q 001384 960 AGDSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEECL-VEWGRRVMGYGRHGPGRAVIPV 1038 (1088)
Q Consensus 960 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 1038 (1088)
|++ .++.++|||||||++|||++|+.||.+..... .... ..... ......
T Consensus 175 ---------------~~~-------~~~~~~Di~slG~il~elltg~~Pf~~~~~~~~~~~~------~~~~~-~~~~~~ 225 (286)
T 3uqc_A 175 ---------------TMP-------DANPQDDIRGIGASLYALLVNRWPLPEAGVRSGLAPA------ERDTA-GQPIEP 225 (286)
T ss_dssp ---------------CCT-------TCCHHHHHHHHHHHHHHHHHSEECSCCCSBCCCSEEC------CBCTT-SCBCCH
T ss_pred ---------------ccC-------CCCchhHHHHHHHHHHHHHHCCCCCCcCCcchhhHHH------HHHhc-cCCCCh
Confidence 333 37889999999999999999999998753210 0000 00000 000000
Q ss_pred hhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHHHHHhhCC
Q 001384 1039 VLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLAMLIKILP 1085 (1088)
Q Consensus 1039 ~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~i~~ 1085 (1088)
. ......+.++.+++.+|++.||++| ++.|+++.|+++..
T Consensus 226 ~------~~~~~~~~~l~~li~~~l~~dP~~R-s~~el~~~L~~~~~ 265 (286)
T 3uqc_A 226 A------DIDRDIPFQISAVAARSVQGDGGIR-SASTLLNLMQQATA 265 (286)
T ss_dssp H------HHCTTSCHHHHHHHHHHHCTTSSCC-CHHHHHHHHHHHHC
T ss_pred h------hcccCCCHHHHHHHHHHcccCCccC-CHHHHHHHHHHHhc
Confidence 0 0112234678899999999999999 99999999998754
No 286
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.1e-33 Score=317.00 Aligned_cols=252 Identities=28% Similarity=0.514 Sum_probs=226.5
Q ss_pred CCcCEEEccCCccCC--CCCccccCCcCcceeeccc-cccCCcCCcccCCCCCCcEEEccCCcCCCCCCccccCCCCCcE
Q 001384 365 PNISRLDLSHNNFTG--PLPVEISQMRSLKFLILAH-NRFNGSIPAVYGNMPNLQTLDLSFNELTGPIPPSIGNLTSLLW 441 (1088)
Q Consensus 365 ~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 441 (1088)
.+++.|+|++|.+++ .+|..+.++++|++|++++ |.+.+.+|..|+++++|++|+|++|++++.+|..++++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 478899999999998 8899999999999999995 9999899999999999999999999999889999999999999
Q ss_pred EEccccccccCCCccccCCCCCCeEEccCCcCccCCCchhhccCCCCCccccccccCCcccccCCccccccccccCCCCC
Q 001384 442 LMLANNSLSGEIPGEIGNCTSLLWLNLSNNKLSGNIPPEVMTIGRNARPTFEANQRNGERTIAGSSECLSMKRWIPADYP 521 (1088)
Q Consensus 442 L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (1088)
|+|++|++++.+|..++++++|++|+|++|+++|.+|..+..+.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~------------------------------------ 173 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFS------------------------------------ 173 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCC------------------------------------
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhh------------------------------------
Confidence 99999999999999999999999999999999988887764331
Q ss_pred CCcceeeehhccccchhhhhcccCCcccccccCCCcccceeeeceEEccCCccccccCcccccCCCccEEeccccccccC
Q 001384 522 PFSFVYTILTRKSCRSLWDRLLKGTGIFPVCLPGLASRTFQITGYLQLSGNQLSGELSPDIGKLQNFSMVHLGFNQFDGK 601 (1088)
Q Consensus 522 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~l~~L~l~~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~ 601 (1088)
..+++|++++|+++|.+|..++.++ |+.|++++|++++.
T Consensus 174 ----------------------------------------~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~ 212 (313)
T 1ogq_A 174 ----------------------------------------KLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGD 212 (313)
T ss_dssp ----------------------------------------TTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEEC
T ss_pred ----------------------------------------hcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCc
Confidence 0235789999999999999999987 99999999999999
Q ss_pred CCCcccCc-cceEEEccCCcccccCCccccCCccCcEEEccccccCCcCCcccccccccceeeccCCCCccccCCCCCcc
Q 001384 602 LPSQFDQL-PLIVLNLTRNNFSGEIPSEFGNIKCLQNLDLSYNNFSGPFPASFNNLTELSKLNISYNPLVSGTIPSTGQL 680 (1088)
Q Consensus 602 ~p~~~~~l-~l~~l~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~l~~L~~l~l~~N~l~~g~ip~~~~~ 680 (1088)
+|..++.+ .|+.|+|++|++++.+|. +..+++|+.|+|++|+|+|.+|..+..+++|+.|+|++|++ +|.+|..+++
T Consensus 213 ~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~~ip~~~~l 290 (313)
T 1ogq_A 213 ASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL-CGEIPQGGNL 290 (313)
T ss_dssp CGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEE-EEECCCSTTG
T ss_pred CCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcc-cccCCCCccc
Confidence 99988888 699999999999977766 88899999999999999999999999999999999999999 7899998889
Q ss_pred cccccCccCCCCCCC
Q 001384 681 ATFEKTSYLGDPLLD 695 (1088)
Q Consensus 681 ~~~~~~~~~~n~~~~ 695 (1088)
.++....+.+|+.+|
T Consensus 291 ~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 291 QRFDVSAYANNKCLC 305 (313)
T ss_dssp GGSCGGGTCSSSEEE
T ss_pred cccChHHhcCCCCcc
Confidence 999999999999998
No 287
>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*
Probab=100.00 E-value=3e-33 Score=311.77 Aligned_cols=229 Identities=23% Similarity=0.280 Sum_probs=178.0
Q ss_pred CCCCcc-ceecccCceEEEEEEeC-CCcEEEEEEccccCccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEec----CC
Q 001384 805 GKFSED-RIIGKGGFGTVYRGVLP-DGREVAVKKLQREGLEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLD----GS 878 (1088)
Q Consensus 805 ~~~~~~-~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~----~~ 878 (1088)
++|.+. +.||+|+||.||+|.+. +++.||+|++... ..+.+|++++.+. .+||||+++++++.. +.
T Consensus 17 ~~y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-----~~~~~e~~~~~~~---~~h~~i~~~~~~~~~~~~~~~ 88 (299)
T 3m2w_A 17 DDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC-----PKARREVELHWRA---SQCPHIVRIVDVYENLYAGRK 88 (299)
T ss_dssp GTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECS-----HHHHHHHHHHHHH---TTSTTBCCEEEEEEEEETTEE
T ss_pred cchhhcCcccccCCCeEEEEEEEcCCCcEEEEEEeccc-----HHHHHHHHHHHHh---ccCCCchhHHhhhhhhcCCCc
Confidence 457776 78999999999999975 6899999998643 4567788777442 479999999999876 67
Q ss_pred eEEEEEEecCCCCHHHHHhhcC--CCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcC---CCCEEEeecc
Q 001384 879 EKILVYEYMEGGSLEDIISDRT--RLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDK---EGKALVTDFG 953 (1088)
Q Consensus 879 ~~~lv~e~~~~gsL~~~l~~~~--~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~---~~~~kl~Dfg 953 (1088)
..++||||+++|+|.+++.... .+++.+++.++.|++.||+|||++ +|+||||||+||+++. ++.+||+|||
T Consensus 89 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~~~kl~Dfg 165 (299)
T 3m2w_A 89 CLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSI---NIAHRDVKPENLLYTSKRPNAILKLTDFG 165 (299)
T ss_dssp EEEEEECCCCSCBHHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESSSSTTCCEEECCCT
T ss_pred eEEEEEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEEecCCCCCcEEEeccc
Confidence 7899999999999999998754 699999999999999999999999 9999999999999998 7899999999
Q ss_pred cceeecCCCCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCCCCCc
Q 001384 954 LARVVSAGDSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRHGPGR 1033 (1088)
Q Consensus 954 ~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 1033 (1088)
++.... +..++.++||||+||++|||++|+.||......... . ...
T Consensus 166 ~a~~~~-----------------------~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~--~---------~~~ 211 (299)
T 3m2w_A 166 FAKETT-----------------------GEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAIS--P---------GMK 211 (299)
T ss_dssp TCEECT-----------------------TCGGGGHHHHHHHHHHHHHHHHSSCSCCC---------C---------CSC
T ss_pred cccccc-----------------------cccCCchhhHHHHHHHHHHHHHCCCCCCCCcchhhh--H---------HHH
Confidence 987543 135678999999999999999999999764321100 0 000
Q ss_pred cccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHHHH
Q 001384 1034 AVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEVLA 1078 (1088)
Q Consensus 1034 ~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~ 1078 (1088)
....................++.+++.+|++.||++||+++|+++
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rps~~e~l~ 256 (299)
T 3m2w_A 212 TRIRMGQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMN 256 (299)
T ss_dssp CSSCTTCCSSCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred HHHhhccccCCchhcccCCHHHHHHHHHHcccChhhCCCHHHHhc
Confidence 000000000000001223467889999999999999999999986
No 288
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=100.00 E-value=1.6e-33 Score=349.38 Aligned_cols=240 Identities=25% Similarity=0.363 Sum_probs=193.8
Q ss_pred cCCCCccceecccCceEEEEEEeC--CCcEEEEEEccccCc-cchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCe-
Q 001384 804 TGKFSEDRIIGKGGFGTVYRGVLP--DGREVAVKKLQREGL-EGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSE- 879 (1088)
Q Consensus 804 ~~~~~~~~~LG~G~~g~Vy~~~~~--~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~- 879 (1088)
.++|++.+.||+|+||+||+|++. +++.||||++..... .....+.+|++++.+ ++||||+++++++...+.
T Consensus 79 ~~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~----l~hp~iv~~~~~~~~~~~~ 154 (681)
T 2pzi_A 79 AGQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAE----VVHPSIVQIFNFVEHTDRH 154 (681)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSCCHHHHHHHHHHHGGGGG----CCCTTBCCEEEEEEEECTT
T ss_pred CCceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccCCHHHHHHHHHHHHHHHh----cCCCCcCeEeeeEeecCCC
Confidence 478999999999999999999975 589999999875432 334568899999986 679999999999987655
Q ss_pred ----EEEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccc
Q 001384 880 ----KILVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLA 955 (1088)
Q Consensus 880 ----~~lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a 955 (1088)
.|+||||+++++|.+++.. ++++.+++.++.||+.||+|||++ +||||||||+||+++.+ .+||+|||++
T Consensus 155 ~~~~~~lv~E~~~g~~L~~~~~~--~l~~~~~~~~~~qi~~aL~~lH~~---giiHrDlkp~NIll~~~-~~kl~DFG~a 228 (681)
T 2pzi_A 155 GDPVGYIVMEYVGGQSLKRSKGQ--KLPVAEAIAYLLEILPALSYLHSI---GLVYNDLKPENIMLTEE-QLKLIDLGAV 228 (681)
T ss_dssp SCEEEEEEEECCCCEECC----C--CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECSS-CEEECCCTTC
T ss_pred CCceeEEEEEeCCCCcHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHC---CCeecccChHHeEEeCC-cEEEEecccc
Confidence 6999999999999998765 699999999999999999999999 99999999999999885 8999999999
Q ss_pred eeecCCCCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCCCchhHHHHHHhhhccCCCCCCccc
Q 001384 956 RVVSAGDSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALEGGEECLVEWGRRVMGYGRHGPGRAV 1035 (1088)
Q Consensus 956 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1035 (1088)
+..... ....||+.|+|||++.+. ++.++|||||||++|+|++|..||.+... .... .
T Consensus 229 ~~~~~~-----~~~~gt~~y~aPE~~~~~-~~~~sDi~slG~~l~~l~~g~~~~~~~~~-------------~~~~--~- 286 (681)
T 2pzi_A 229 SRINSF-----GYLYGTPGFQAPEIVRTG-PTVATDIYTVGRTLAALTLDLPTRNGRYV-------------DGLP--E- 286 (681)
T ss_dssp EETTCC-----SCCCCCTTTSCTTHHHHC-SCHHHHHHHHHHHHHHHHSCCCEETTEEC-------------SSCC--T-
T ss_pred hhcccC-----CccCCCccccCHHHHcCC-CCCceehhhhHHHHHHHHhCCCCCccccc-------------cccc--c-
Confidence 876432 345789999999988764 48999999999999999999988875210 0000 0
Q ss_pred cchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCC-CHHHHHHHHHhhC
Q 001384 1036 IPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARP-NVKEVLAMLIKIL 1084 (1088)
Q Consensus 1036 ~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RP-s~~eil~~L~~i~ 1084 (1088)
..........+.+++.+|++.||++|| +++++.+.+.+++
T Consensus 287 ---------~~~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~~~ 327 (681)
T 2pzi_A 287 ---------DDPVLKTYDSYGRLLRRAIDPDPRQRFTTAEEMSAQLTGVL 327 (681)
T ss_dssp ---------TCHHHHHCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHHH
T ss_pred ---------cccccccCHHHHHHHhhhccCChhhCCCHHHHHHHHHHHHH
Confidence 001122346788999999999999999 5666777776653
No 289
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=4.1e-32 Score=309.60 Aligned_cols=318 Identities=21% Similarity=0.284 Sum_probs=242.0
Q ss_pred CCCCCCCCCcCccCCCCCCCcEEECccccccCcccCCCCCCCceeecccccccccccCchhhhcccceEEeccCccCCCC
Q 001384 110 LSRNTFSGSIPDDLSSCRSLKYLNLSHNILSGDLNLSGLRSLEILDLSVNRIHGEISFSFPAICEKLVVANLSLNNLTGR 189 (1088)
Q Consensus 110 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 189 (1088)
+....+++. ..+..+++|++|++++|.+.....+..+++|++|++++|++++..+ ...+++|++|++++|++++.
T Consensus 29 ~~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~---~~~l~~L~~L~L~~n~i~~~ 103 (347)
T 4fmz_A 29 LQKASVTDV--VTQEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP---LSNLVKLTNLYIGTNKITDI 103 (347)
T ss_dssp HTCSCTTSE--ECHHHHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCC
T ss_pred ccccccCCc--ccchhcccccEEEEeCCccccchhhhhcCCccEEEccCCccccchh---hhcCCcCCEEEccCCcccCc
Confidence 344444433 2356789999999999999887778889999999999998886544 34567788888888877764
Q ss_pred CCccccCCCCCcEEEccCccccccccccCcccceecccCcccccccccccccCCCccCEEEcCCCcccccCcccccCCCC
Q 001384 190 IDTCFDGCLNLRYLDLSSNNFRGNIWNGLAQLVEFSVSENVLSGVVSSSVFKENCSLEIFDLSENEFIGDFPGEVSNCRN 269 (1088)
Q Consensus 190 ~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 269 (1088)
..+.++++|++|++++|++++. + .+..+++|++|++++|.....++ .+..+++
T Consensus 104 --~~~~~l~~L~~L~l~~n~i~~~----------------------~--~~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~ 156 (347)
T 4fmz_A 104 --SALQNLTNLRELYLNEDNISDI----------------------S--PLANLTKMYSLNLGANHNLSDLS-PLSNMTG 156 (347)
T ss_dssp --GGGTTCTTCSEEECTTSCCCCC----------------------G--GGTTCTTCCEEECTTCTTCCCCG-GGTTCTT
T ss_pred --hHHcCCCcCCEEECcCCcccCc----------------------h--hhccCCceeEEECCCCCCccccc-chhhCCC
Confidence 3477777788887777776531 1 15566677888888776554444 3777888
Q ss_pred CcEEEccCccccCCCccccCCCCCCCEEeCCCCcCCccCcccccCCCCCcEEEcCCCcCCCchhHhhhcccccceeecCc
Q 001384 270 LVVLNLFGNNFSGPIPAEIGSISGLEALFLGKNNFLSVIPESLLNLSKLEVLDLSSNNFGGEVQKIFGRFTQVKILALHS 349 (1088)
Q Consensus 270 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 349 (1088)
|++|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++
T Consensus 157 L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~ 230 (347)
T 4fmz_A 157 LNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGN 230 (347)
T ss_dssp CCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCS
T ss_pred CcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccC
Confidence 8888888888774433 7778888888888888776433 7777888888888888877655 77778888888888
Q ss_pred CcccCCCCCccccCCCCcCEEEccCCccCCCCCccccCCcCcceeeccccccCCcCCcccCCCCCCcEEEccCCcCCCCC
Q 001384 350 NSYIDGMNSSGILKLPNISRLDLSHNNFTGPLPVEISQMRSLKFLILAHNRFNGSIPAVYGNMPNLQTLDLSFNELTGPI 429 (1088)
Q Consensus 350 n~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 429 (1088)
|.+..... +..+++|++|++++|.+++. ..+..+++|++|++++|++++ + ..+..+++|+.|++++|++++..
T Consensus 231 n~l~~~~~---~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~~~~ 303 (347)
T 4fmz_A 231 NKITDLSP---LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNNQLGNED 303 (347)
T ss_dssp SCCCCCGG---GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCGGG
T ss_pred CccCCCcc---hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEECcCCcCCCcC
Confidence 77544222 67888999999999999853 468888999999999999985 4 45788999999999999999888
Q ss_pred CccccCCCCCcEEEccccccccCCCccccCCCCCCeEEccCCcCc
Q 001384 430 PPSIGNLTSLLWLMLANNSLSGEIPGEIGNCTSLLWLNLSNNKLS 474 (1088)
Q Consensus 430 p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 474 (1088)
|..++++++|++|++++|++++..| +..+++|++|++++|+++
T Consensus 304 ~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 304 MEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp HHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred hhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 8889999999999999999986555 888999999999999885
No 290
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=9.5e-32 Score=306.56 Aligned_cols=308 Identities=21% Similarity=0.287 Sum_probs=238.1
Q ss_pred cccCCccCCeeeCCCCCCCCCcCccCCCCCCCcEEECccccccCcccCCCCCCCceeecccccccccccCchhhhcccce
Q 001384 98 NFSALTQLSYLDLSRNTFSGSIPDDLSSCRSLKYLNLSHNILSGDLNLSGLRSLEILDLSVNRIHGEISFSFPAICEKLV 177 (1088)
Q Consensus 98 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~ 177 (1088)
.+..+++|++|++++|.++. +| .+..+++|++|+|++|.+++...+.++++|++|+|++|.+++. + . ...+++|+
T Consensus 39 ~~~~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~-~-~-~~~l~~L~ 113 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDI-S-A-LQNLTNLR 113 (347)
T ss_dssp CHHHHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC-G-G-GTTCTTCS
T ss_pred cchhcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCc-h-H-HcCCCcCC
Confidence 45688999999999999984 45 4899999999999999999877799999999999999999864 2 2 45678999
Q ss_pred EEeccCccCCCCCCccccCCCCCcEEEccCccccccccccCcccceecccCcccccccccccccCCCccCEEEcCCCccc
Q 001384 178 VANLSLNNLTGRIDTCFDGCLNLRYLDLSSNNFRGNIWNGLAQLVEFSVSENVLSGVVSSSVFKENCSLEIFDLSENEFI 257 (1088)
Q Consensus 178 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~ 257 (1088)
+|++++|++++..+ +..+++|++|++++|.....+ ..+..+++|++|++++|.+.
T Consensus 114 ~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~-----------------------~~~~~l~~L~~L~l~~~~~~ 168 (347)
T 4fmz_A 114 ELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDL-----------------------SPLSNMTGLNYLTVTESKVK 168 (347)
T ss_dssp EEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCC-----------------------GGGTTCTTCCEEECCSSCCC
T ss_pred EEECcCCcccCchh--hccCCceeEEECCCCCCcccc-----------------------cchhhCCCCcEEEecCCCcC
Confidence 99999999998765 899999999999999643211 11445556666666666665
Q ss_pred ccCcccccCCCCCcEEEccCccccCCCccccCCCCCCCEEeCCCCcCCccCcccccCCCCCcEEEcCCCcCCCchhHhhh
Q 001384 258 GDFPGEVSNCRNLVVLNLFGNNFSGPIPAEIGSISGLEALFLGKNNFLSVIPESLLNLSKLEVLDLSSNNFGGEVQKIFG 337 (1088)
Q Consensus 258 ~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 337 (1088)
+..+ +..+++|++|++++|.+.+. +. +..+++|+.|++++|.+.+..+ +..+++|++|++++|.+++..+ +.
T Consensus 169 ~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~ 240 (347)
T 4fmz_A 169 DVTP--IANLTDLYSLSLNYNQIEDI-SP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LA 240 (347)
T ss_dssp CCGG--GGGCTTCSEEECTTSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GT
T ss_pred Cchh--hccCCCCCEEEccCCccccc-cc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hh
Confidence 4333 66667777777777776643 22 6666777777777776665433 6666777777777777766554 66
Q ss_pred cccccceeecCcCcccCCCCCccccCCCCcCEEEccCCccCCCCCccccCCcCcceeeccccccCCcCCcccCCCCCCcE
Q 001384 338 RFTQVKILALHSNSYIDGMNSSGILKLPNISRLDLSHNNFTGPLPVEISQMRSLKFLILAHNRFNGSIPAVYGNMPNLQT 417 (1088)
Q Consensus 338 ~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 417 (1088)
.+++|+.|++++|.+... ..+..+++|++|++++|++++. ..+..+++|+.|++++|++++..|..++.+++|++
T Consensus 241 ~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 315 (347)
T 4fmz_A 241 NLSQLTWLEIGTNQISDI---NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT 315 (347)
T ss_dssp TCTTCCEEECCSSCCCCC---GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSE
T ss_pred cCCCCCEEECCCCccCCC---hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCE
Confidence 677777777777765432 4567889999999999999864 46888999999999999999888899999999999
Q ss_pred EEccCCcCCCCCCccccCCCCCcEEEccccccc
Q 001384 418 LDLSFNELTGPIPPSIGNLTSLLWLMLANNSLS 450 (1088)
Q Consensus 418 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 450 (1088)
|++++|++++..| +..+++|++|++++|.|+
T Consensus 316 L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 316 LFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp EECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred EEccCCccccccC--hhhhhccceeehhhhccc
Confidence 9999999996555 889999999999999886
No 291
>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Probab=99.98 E-value=5.1e-33 Score=323.84 Aligned_cols=237 Identities=15% Similarity=0.137 Sum_probs=176.0
Q ss_pred CCCCccceecccCceEEEEEEeC-CCcEEEEEEccccCcc---chHHHHHHHHHHhCCCCCCCC-Cc-------------
Q 001384 805 GKFSEDRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGLE---GEREFRAEMEVLSGNGFGWPH-PN------------- 866 (1088)
Q Consensus 805 ~~~~~~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~---~~~~~~~E~~~l~~~~~~l~h-~n------------- 866 (1088)
.+|...++||+|+||+||+|++. +|+.||||++...... ..+.+.+|+.++..+ .| +|
T Consensus 78 ~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l----~~~~~~~~~~~~~~~~~~ 153 (413)
T 3dzo_A 78 RTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLL----RGIKNQKQAKVHLRFIFP 153 (413)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGS----TTCCSHHHHHHHTCBCCC
T ss_pred eeEEEecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhh----ccCCCHHHHHHhcccccc
Confidence 34777899999999999999965 7999999998843222 246788999988864 34 21
Q ss_pred --------eeEEeeEEec-----CCeEEEEEEecCCCCHHHHHhh-------cCCCCHHHHHHHHHHHHHHHHHHHhcCC
Q 001384 867 --------LVTLYGWCLD-----GSEKILVYEYMEGGSLEDIISD-------RTRLTWRRRLDIAIDVARALVFLHHECY 926 (1088)
Q Consensus 867 --------iv~l~~~~~~-----~~~~~lv~e~~~~gsL~~~l~~-------~~~l~~~~~~~i~~qi~~~L~yLH~~~~ 926 (1088)
...+..++.. ....+++|+++ +++|.++++. ...+++..++.++.|++.||+|||++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~-- 230 (413)
T 3dzo_A 154 FDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHY-- 230 (413)
T ss_dssp CEEEECCC---------------CCSEEEEEECC-SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred hhhcccCCCCccccccCCCccccccceEEEeehh-cCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHHhC--
Confidence 1111111111 22456777776 5699998842 23478889999999999999999999
Q ss_pred CCeEecCCCCCCEEEcCCCCEEEeecccceeecCCCCcccccccccccccCcccc----------CCCCCCcchhHHHHH
Q 001384 927 PPIVHRDVKASNVLLDKEGKALVTDFGLARVVSAGDSHVSTTIAGTVGYVAPEYG----------QTWQATTKGDVYSFG 996 (1088)
Q Consensus 927 ~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~gt~~y~aPE~~----------~~~~~~~~~DvwslG 996 (1088)
+||||||||+|||++.++.+||+|||+++..... .....| +.|+|||++ ....++.++||||||
T Consensus 231 -~iiHrDiKp~NILl~~~~~~kL~DFG~a~~~~~~----~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~DvwSlG 304 (413)
T 3dzo_A 231 -GLVHTYLRPVDIVLDQRGGVFLTGFEHLVRDGAS----AVSPIG-RGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLG 304 (413)
T ss_dssp -TEECSCCCGGGEEECTTCCEEECCGGGCEETTEE----ECCCCC-TTTCCHHHHHHHTSTTGGGCCEEECHHHHHHHHH
T ss_pred -CcccCCcccceEEEecCCeEEEEeccceeecCCc----cccCCC-CceeCchhhhccccccccccCcCCCchhhHHHHH
Confidence 9999999999999999999999999998865322 344567 999999988 666789999999999
Q ss_pred HHHHHHHhCCcCCCCCchhHHHHHHhhhccCCCCCCccccchhhcCCCccccHHHHHHHHHHHhhhcccCCCCCCCHHHH
Q 001384 997 VLAMELATGRRALEGGEECLVEWGRRVMGYGRHGPGRAVIPVVLLGSGLAEGAEEMSELLRIGVRCTAEAPNARPNVKEV 1076 (1088)
Q Consensus 997 ~~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~ei 1076 (1088)
|++|||++|+.||....... .......... ..+..+.+++.+|++.||++||++.|+
T Consensus 305 vil~elltg~~Pf~~~~~~~------------------~~~~~~~~~~-----~~~~~~~~li~~~l~~dP~~Rpt~~~~ 361 (413)
T 3dzo_A 305 LAIYWIWCADLPNTDDAALG------------------GSEWIFRSCK-----NIPQPVRALLEGFLRYPKEDRLLPLQA 361 (413)
T ss_dssp HHHHHHHHSSCCCCTTGGGS------------------CSGGGGSSCC-----CCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred HHHHHHHHCCCCCCCcchhh------------------hHHHHHhhcc-----cCCHHHHHHHHHHccCChhhCcCHHHH
Confidence 99999999999998653210 0111111110 123568889999999999999997776
Q ss_pred H
Q 001384 1077 L 1077 (1088)
Q Consensus 1077 l 1077 (1088)
+
T Consensus 362 l 362 (413)
T 3dzo_A 362 M 362 (413)
T ss_dssp T
T ss_pred H
Confidence 4
No 292
>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A
Probab=99.97 E-value=4.5e-33 Score=315.85 Aligned_cols=245 Identities=16% Similarity=0.120 Sum_probs=183.1
Q ss_pred CCCCccceecccCceEEEEEEeCCCcEEEEEEccccCc--------cchHHHHHHHHHHhCCCC-----CCCCCceeEEe
Q 001384 805 GKFSEDRIIGKGGFGTVYRGVLPDGREVAVKKLQREGL--------EGEREFRAEMEVLSGNGF-----GWPHPNLVTLY 871 (1088)
Q Consensus 805 ~~~~~~~~LG~G~~g~Vy~~~~~~~~~vavK~~~~~~~--------~~~~~~~~E~~~l~~~~~-----~l~h~niv~l~ 871 (1088)
++|++.+.||+|+||+||+|++ +|+.||||++..... ...+.+.+|+++++.+.. .-.||||+++.
T Consensus 20 ~~y~~~~~lG~G~~g~V~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~l~ 98 (336)
T 2vuw_A 20 EKLQRCEKIGEGVFGEVFQTIA-DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGLN 98 (336)
T ss_dssp HHHHTCEEEEEETTEEEEEEEE-TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCCEE
T ss_pred ccchheeeecccCceEEEEEEe-CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhhhc
Confidence 5688999999999999999998 689999999986532 122677888888765320 01366666666
Q ss_pred eEE-----------------ec-------------CCeEEEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHH
Q 001384 872 GWC-----------------LD-------------GSEKILVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFL 921 (1088)
Q Consensus 872 ~~~-----------------~~-------------~~~~~lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yL 921 (1088)
+++ .+ +...|+||||+++|++.+.+.+ ..+++.+++.++.||+.||+||
T Consensus 99 ~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~-~~~~~~~~~~i~~qi~~aL~~l 177 (336)
T 2vuw_A 99 SVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRT-KLSSLATAKSILHQLTASLAVA 177 (336)
T ss_dssp EEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTT-TCCCHHHHHHHHHHHHHHHHHH
T ss_pred ceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHh-cCCCHHHHHHHHHHHHHHHHHH
Confidence 653 32 6789999999999977766644 5689999999999999999999
Q ss_pred H-hcCCCCeEecCCCCCCEEEcCCC--------------------CEEEeecccceeecCCCCcccccccccccccCccc
Q 001384 922 H-HECYPPIVHRDVKASNVLLDKEG--------------------KALVTDFGLARVVSAGDSHVSTTIAGTVGYVAPEY 980 (1088)
Q Consensus 922 H-~~~~~~ivH~DLkp~NIll~~~~--------------------~~kl~Dfg~a~~~~~~~~~~~~~~~gt~~y~aPE~ 980 (1088)
| ++ +|+||||||+|||++.++ .+||+|||+|+..... ...||+.|+|||+
T Consensus 178 H~~~---~ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~~~------~~~gt~~y~aPE~ 248 (336)
T 2vuw_A 178 EASL---RFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERDG------IVVFCDVSMDEDL 248 (336)
T ss_dssp HHHH---CCBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEETT------EEECCCCTTCSGG
T ss_pred HHhC---CEeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecCCC------cEEEeecccChhh
Confidence 9 88 999999999999999887 8999999999876532 3479999999999
Q ss_pred cCCCCCCcchhHHHHHHH-HHHHHhCCcCCCCCchhHHHHHHhhhccCCCCCCccccchhhcCCCccccHHHHHHHHHHH
Q 001384 981 GQTWQATTKGDVYSFGVL-AMELATGRRALEGGEECLVEWGRRVMGYGRHGPGRAVIPVVLLGSGLAEGAEEMSELLRIG 1059 (1088)
Q Consensus 981 ~~~~~~~~~~DvwslG~~-l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li 1059 (1088)
+.+.. +.++||||++++ .+++++|..||.... .............. .. . ............++.+++
T Consensus 249 ~~g~~-~~~~Diwsl~~~~~~~~~~g~~p~~~~~-~~~~~~~~~~~~~~-~~-~--------~~~~~~~~~~s~~~~dli 316 (336)
T 2vuw_A 249 FTGDG-DYQFDIYRLMKKENNNRWGEYHPYSNVL-WLHYLTDKMLKQMT-FK-T--------KCNTPAMKQIKRKIQEFH 316 (336)
T ss_dssp GCCCS-SHHHHHHHHHHHHHTTCTTSCCTHHHHH-HHHHHHHHHHHTCC-CS-S--------CCCSHHHHHHHHHHHHHH
T ss_pred hcCCC-ccceehhhhhCCCCcccccccCCCcchh-hhhHHHHhhhhhhc-cC-c--------ccchhhhhhcCHHHHHHH
Confidence 98766 899999998776 788999999985310 00000111110000 00 0 001112345678899999
Q ss_pred hhhcccCCCCCCCHHHHH
Q 001384 1060 VRCTAEAPNARPNVKEVL 1077 (1088)
Q Consensus 1060 ~~cl~~dP~~RPs~~eil 1077 (1088)
.+|++.| |++|++
T Consensus 317 ~~~L~~d-----sa~e~l 329 (336)
T 2vuw_A 317 RTMLNFS-----SATDLL 329 (336)
T ss_dssp HHGGGSS-----SHHHHH
T ss_pred HHHhccC-----CHHHHH
Confidence 9999976 898887
No 293
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=7.3e-32 Score=303.85 Aligned_cols=276 Identities=17% Similarity=0.219 Sum_probs=190.4
Q ss_pred CCchhhHHHHHHHHhhcccCCCCCccccccc----CCCCCCcccCCceeCC--------CCceeEEeccccccccccccc
Q 001384 30 DSLETDREVLSNLRSFLENNNPVNEGHYMQW----NQSSSPCEWPGIICSP--------DKARVNGLNLTDWNISGDIFN 97 (1088)
Q Consensus 30 ~~~~~d~~~l~~~~~~~~~~~~~~~~~~~sW----~~~~~~C~W~gv~C~~--------~~~~v~~L~L~~~~l~~~~~~ 97 (1088)
....+|++||++||+.+... +.+.+.+| +...++|.|.|++|+. ...+|+.|+|++++++ .+|+
T Consensus 23 ~~~~~~~~aLl~~k~~~~~~---~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~ 98 (328)
T 4fcg_A 23 TALRPYHDVLSQWQRHYNAD---RNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPD 98 (328)
T ss_dssp CCCCCHHHHHHHHHHHHHHC---CTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCS
T ss_pred ccCchHHHHHHHHHHhccCC---chhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcCh
Confidence 34578999999999998542 34578899 5567899999999952 3468999999999998 6788
Q ss_pred cccCCccCCeeeCCCCCCCCCcCccCCCCCCCcEEECccccccCcc-cCCCCCCCceeecccccccccccCchhhhcccc
Q 001384 98 NFSALTQLSYLDLSRNTFSGSIPDDLSSCRSLKYLNLSHNILSGDL-NLSGLRSLEILDLSVNRIHGEISFSFPAICEKL 176 (1088)
Q Consensus 98 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L 176 (1088)
.++.+++|++|+|++|.++ .+|..++.+++|++|+|++|.++... .+.++++|++|+|++|.+.+.+|..+...
T Consensus 99 ~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~---- 173 (328)
T 4fcg_A 99 QAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLAST---- 173 (328)
T ss_dssp CGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEE----
T ss_pred hhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhc----
Confidence 8999999999999999999 89999999999999999999998543 58889999999999988888777665321
Q ss_pred eEEeccCccCCCCCCccccCCCCCcEEEccCccccccccccCcccceecccCcccccccccccccCCCccCEEEcCCCcc
Q 001384 177 VVANLSLNNLTGRIDTCFDGCLNLRYLDLSSNNFRGNIWNGLAQLVEFSVSENVLSGVVSSSVFKENCSLEIFDLSENEF 256 (1088)
Q Consensus 177 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l 256 (1088)
..+..|.++++|++|+|++|+++ .++. .+..+++|++|+|++|++
T Consensus 174 ------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~----------------------~l~~l~~L~~L~L~~N~l 218 (328)
T 4fcg_A 174 ------------DASGEHQGLVNLQSLRLEWTGIR-SLPA----------------------SIANLQNLKSLKIRNSPL 218 (328)
T ss_dssp ------------C-CCCEEESTTCCEEEEEEECCC-CCCG----------------------GGGGCTTCCEEEEESSCC
T ss_pred ------------cchhhhccCCCCCEEECcCCCcC-cchH----------------------hhcCCCCCCEEEccCCCC
Confidence 11223445666666666666554 2211 133344555555555555
Q ss_pred cccCcccccCCCCCcEEEccCccccCCCccccCCCCCCCEEeCCCCcCCccCcccccCCCCCcEEEcCCCcCCCchhHhh
Q 001384 257 IGDFPGEVSNCRNLVVLNLFGNNFSGPIPAEIGSISGLEALFLGKNNFLSVIPESLLNLSKLEVLDLSSNNFGGEVQKIF 336 (1088)
Q Consensus 257 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~ 336 (1088)
++ +|..+..+++|++|+|++|++.+.+|..++.+++|+.|+|++|++.+.+|..+.++++|++|+|++|.+.+.+|..+
T Consensus 219 ~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l 297 (328)
T 4fcg_A 219 SA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297 (328)
T ss_dssp CC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGG
T ss_pred Cc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHH
Confidence 52 34445555566666666655555555555566666666666655555556556666666666666666666666666
Q ss_pred hcccccceeecCcC
Q 001384 337 GRFTQVKILALHSN 350 (1088)
Q Consensus 337 ~~l~~L~~L~L~~n 350 (1088)
+.+++|+.+++..+
T Consensus 298 ~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 298 AQLPANCIILVPPH 311 (328)
T ss_dssp GGSCTTCEEECCGG
T ss_pred hhccCceEEeCCHH
Confidence 66666666655544
No 294
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=2.2e-30 Score=293.08 Aligned_cols=294 Identities=20% Similarity=0.249 Sum_probs=195.0
Q ss_pred CccCEEEcCCCcccccCcccccCCCCCcEEEccCccccCCCccccCCCCCCCEEeCCCCcCCccCcccccCCCCCcEEEc
Q 001384 244 CSLEIFDLSENEFIGDFPGEVSNCRNLVVLNLFGNNFSGPIPAEIGSISGLEALFLGKNNFLSVIPESLLNLSKLEVLDL 323 (1088)
Q Consensus 244 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 323 (1088)
++++.++++++.++ .+|..+. ++|++|+|++|.+++..|..|..+++|++|+|++|++++..|..|.++++|++|+|
T Consensus 33 c~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 33 CHLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp EETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred ccCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 35677777777766 5555553 56777777777777666667777777777777777777776777777777777777
Q ss_pred CCCcCCCchhHhhhcccccceeecCcCcccCCCCCccccCCCCcCEEEccCCccCCCCCccccCCcCcceeeccccccC-
Q 001384 324 SSNNFGGEVQKIFGRFTQVKILALHSNSYIDGMNSSGILKLPNISRLDLSHNNFTGPLPVEISQMRSLKFLILAHNRFN- 402 (1088)
Q Consensus 324 ~~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~- 402 (1088)
++|+++..++.. .++|++|++++|++++..+..+..+++|+.|++++|.++
T Consensus 110 ~~n~l~~l~~~~----------------------------~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~ 161 (332)
T 2ft3_A 110 SKNHLVEIPPNL----------------------------PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN 161 (332)
T ss_dssp CSSCCCSCCSSC----------------------------CTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBG
T ss_pred CCCcCCccCccc----------------------------cccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcccc
Confidence 777766332211 156778888888887665666788888888888888885
Q ss_pred -CcCCcccCCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEccccccccCCCccccCCCCCCeEEccCCcCccCCCchh
Q 001384 403 -GSIPAVYGNMPNLQTLDLSFNELTGPIPPSIGNLTSLLWLMLANNSLSGEIPGEIGNCTSLLWLNLSNNKLSGNIPPEV 481 (1088)
Q Consensus 403 -~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~~ 481 (1088)
+..|..+..+ +|+.|++++|++++ +|..+. ++|++|++++|++++..|..+.++++|++|+|++|++++..|..+
T Consensus 162 ~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~ 237 (332)
T 2ft3_A 162 SGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSL 237 (332)
T ss_dssp GGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGG
T ss_pred CCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHh
Confidence 3567777777 88888888888884 666554 678888888888887667778888888888888888875333322
Q ss_pred hccCCCCCccccccccCCcccccCCccccccccccCCCCCCCcceeeehhccccchhhhhcccCCcccccccCCCcccce
Q 001384 482 MTIGRNARPTFEANQRNGERTIAGSSECLSMKRWIPADYPPFSFVYTILTRKSCRSLWDRLLKGTGIFPVCLPGLASRTF 561 (1088)
Q Consensus 482 ~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~ 561 (1088)
..+
T Consensus 238 ~~l----------------------------------------------------------------------------- 240 (332)
T 2ft3_A 238 SFL----------------------------------------------------------------------------- 240 (332)
T ss_dssp GGC-----------------------------------------------------------------------------
T ss_pred hCC-----------------------------------------------------------------------------
Confidence 111
Q ss_pred eeeceEEccCCccccccCcccccCCCccEEeccccccccCCCCcccCccceEEEccCCcccccCCccccCCccCcEEEcc
Q 001384 562 QITGYLQLSGNQLSGELSPDIGKLQNFSMVHLGFNQFDGKLPSQFDQLPLIVLNLTRNNFSGEIPSEFGNIKCLQNLDLS 641 (1088)
Q Consensus 562 ~~l~~L~l~~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~l~l~~l~l~~N~l~~~~p~~~~~l~~L~~L~l~ 641 (1088)
..+++|+|++|+++ .+|..++.+++|+.|++++|++++..+..|.... + -....+|+.|+|+
T Consensus 241 ~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~---------------~--~~~~~~l~~L~l~ 302 (332)
T 2ft3_A 241 PTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVG---------------F--GVKRAYYNGISLF 302 (332)
T ss_dssp TTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSS---------------C--CSSSCCBSEEECC
T ss_pred CCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccc---------------c--ccccccccceEee
Confidence 12346777777777 6777777777788888888877755555443321 0 0012345555555
Q ss_pred ccccC--CcCCcccccccccceeeccCC
Q 001384 642 YNNFS--GPFPASFNNLTELSKLNISYN 667 (1088)
Q Consensus 642 ~N~l~--g~~p~~~~~l~~L~~l~l~~N 667 (1088)
+|.+. +..|..|..+++|+.+++++|
T Consensus 303 ~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 303 NNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp SSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred cCcccccccCcccccccchhhhhhcccc
Confidence 55554 344555555666666666555
No 295
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=6.1e-30 Score=289.29 Aligned_cols=198 Identities=21% Similarity=0.297 Sum_probs=120.9
Q ss_pred CccCEEEcCCCcccccCcccccCCCCCcEEEccCccccCCCccccCCCCCCCEEeCCCCcCCccCcccccCCCCCcEEEc
Q 001384 244 CSLEIFDLSENEFIGDFPGEVSNCRNLVVLNLFGNNFSGPIPAEIGSISGLEALFLGKNNFLSVIPESLLNLSKLEVLDL 323 (1088)
Q Consensus 244 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 323 (1088)
++++.++++++.++ .+|..+. ++|++|+|++|++++..+..|+.+++|++|+|++|.+++..|..|.++++|++|+|
T Consensus 31 c~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 31 CHLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp EETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 35666666666655 3444443 45666666666666555555666666666666666666655666666666666666
Q ss_pred CCCcCCCchhHhhhcccccceeecCcCcccCCCCCccccCCCCcCEEEccCCccCCCCCccccCCcCcceeeccccccCC
Q 001384 324 SSNNFGGEVQKIFGRFTQVKILALHSNSYIDGMNSSGILKLPNISRLDLSHNNFTGPLPVEISQMRSLKFLILAHNRFNG 403 (1088)
Q Consensus 324 ~~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 403 (1088)
++|+++..+... .++|++|++++|.+++..+..+.++++|+.|++++|+++.
T Consensus 108 s~n~l~~l~~~~----------------------------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 159 (330)
T 1xku_A 108 SKNQLKELPEKM----------------------------PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS 159 (330)
T ss_dssp CSSCCSBCCSSC----------------------------CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG
T ss_pred CCCcCCccChhh----------------------------cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCc
Confidence 666655321110 1456666666666665555556666666666666666642
Q ss_pred --cCCcccCCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEccccccccCCCccccCCCCCCeEEccCCcCcc
Q 001384 404 --SIPAVYGNMPNLQTLDLSFNELTGPIPPSIGNLTSLLWLMLANNSLSGEIPGEIGNCTSLLWLNLSNNKLSG 475 (1088)
Q Consensus 404 --~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g 475 (1088)
..+..+..+++|++|++++|+++ .+|..+. ++|++|++++|++++..|..+..+++|++|+|++|++++
T Consensus 160 ~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 230 (330)
T 1xku_A 160 SGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 230 (330)
T ss_dssp GGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE
T ss_pred cCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCce
Confidence 45556666666666666666666 3555443 566677777777666556666666677777777666664
No 296
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=7.2e-34 Score=337.62 Aligned_cols=379 Identities=18% Similarity=0.114 Sum_probs=213.1
Q ss_pred CCCceeecccccccccccCchhhhcccceEEeccCccCCC----CCCccccCCCCCcEEEccCccccccccccCccccee
Q 001384 149 RSLEILDLSVNRIHGEISFSFPAICEKLVVANLSLNNLTG----RIDTCFDGCLNLRYLDLSSNNFRGNIWNGLAQLVEF 224 (1088)
Q Consensus 149 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L 224 (1088)
++|++|||++|++++.....+...+++|++|+|++|++++ .++..+..+++|++|+|++|++++..+..
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~------- 75 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHC------- 75 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHH-------
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHH-------
Confidence 4677888888887765555545556677777777777764 23455666677777777777665422211
Q ss_pred cccCcccccccccccccCCC----ccCEEEcCCCcccc----cCcccccCCCCCcEEEccCccccCCCccccC-----CC
Q 001384 225 SVSENVLSGVVSSSVFKENC----SLEIFDLSENEFIG----DFPGEVSNCRNLVVLNLFGNNFSGPIPAEIG-----SI 291 (1088)
Q Consensus 225 ~L~~n~l~~~~~~~~~~~l~----~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~-----~l 291 (1088)
.+..+. +|++|+|++|+++. .+|..+..+++|++|+|++|.+++..+..+. ..
T Consensus 76 --------------l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~ 141 (461)
T 1z7x_W 76 --------------VLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQ 141 (461)
T ss_dssp --------------HHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTT
T ss_pred --------------HHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCC
Confidence 111122 56777777776663 4566677777777777777776643333222 24
Q ss_pred CCCCEEeCCCCcCCcc----CcccccCCCCCcEEEcCCCcCCCchhHhhhcccccceeecCcCcccCCCCCccccCCCCc
Q 001384 292 SGLEALFLGKNNFLSV----IPESLLNLSKLEVLDLSSNNFGGEVQKIFGRFTQVKILALHSNSYIDGMNSSGILKLPNI 367 (1088)
Q Consensus 292 ~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L 367 (1088)
++|++|+|++|++++. ++..+..+++|++|+|++|.+.+..+..+... .....++|
T Consensus 142 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~--------------------l~~~~~~L 201 (461)
T 1z7x_W 142 CRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQG--------------------LKDSPCQL 201 (461)
T ss_dssp CCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHH--------------------HHHSCCCC
T ss_pred CcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHH--------------------HhcCCCCc
Confidence 4566666666666553 24444555666666666666554433332210 00023456
Q ss_pred CEEEccCCccCCC----CCccccCCcCcceeeccccccCCcC-----CcccCCCCCCcEEEccCCcCCCC----CCcccc
Q 001384 368 SRLDLSHNNFTGP----LPVEISQMRSLKFLILAHNRFNGSI-----PAVYGNMPNLQTLDLSFNELTGP----IPPSIG 434 (1088)
Q Consensus 368 ~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~~-----p~~~~~l~~L~~L~L~~N~l~~~----~p~~~~ 434 (1088)
++|+|++|.+++. ++..+..+++|++|++++|++++.. +..+..+++|++|++++|++++. ++..+.
T Consensus 202 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 281 (461)
T 1z7x_W 202 EALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR 281 (461)
T ss_dssp CEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH
T ss_pred eEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHh
Confidence 6666666666542 3444455555555555555554321 12222344555555555555432 333344
Q ss_pred CCCCCcEEEccccccccCCCccccC-----CCCCCeEEccCCcCccCCCchhhccCCCCCccccccccCCcccccCCccc
Q 001384 435 NLTSLLWLMLANNSLSGEIPGEIGN-----CTSLLWLNLSNNKLSGNIPPEVMTIGRNARPTFEANQRNGERTIAGSSEC 509 (1088)
Q Consensus 435 ~l~~L~~L~L~~N~l~~~~p~~l~~-----l~~L~~L~L~~N~l~g~ip~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~ 509 (1088)
++++|++|+|++|.+++..+..+.. .++|++
T Consensus 282 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~-------------------------------------------- 317 (461)
T 1z7x_W 282 AKESLKELSLAGNELGDEGARLLCETLLEPGCQLES-------------------------------------------- 317 (461)
T ss_dssp HCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCE--------------------------------------------
T ss_pred hCCCcceEECCCCCCchHHHHHHHHHhccCCcccee--------------------------------------------
Confidence 4444444444444444322222221 134444
Q ss_pred cccccccCCCCCCCcceeeehhccccchhhhhcccCCcccccccCCCcccceeeeceEEccCCccccc----cCcccccC
Q 001384 510 LSMKRWIPADYPPFSFVYTILTRKSCRSLWDRLLKGTGIFPVCLPGLASRTFQITGYLQLSGNQLSGE----LSPDIGKL 585 (1088)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~l~~L~l~~N~l~g~----~p~~~~~l 585 (1088)
|++++|++++. +|..+..+
T Consensus 318 ---------------------------------------------------------L~L~~n~l~~~~~~~l~~~l~~~ 340 (461)
T 1z7x_W 318 ---------------------------------------------------------LWVKSCSFTAACCSHFSSVLAQN 340 (461)
T ss_dssp ---------------------------------------------------------EECTTSCCBGGGHHHHHHHHHHC
T ss_pred ---------------------------------------------------------eEcCCCCCchHHHHHHHHHHhhC
Confidence 44555554433 45556667
Q ss_pred CCccEEeccccccccCCCCcccC------ccceEEEccCCcccc----cCCccccCCccCcEEEccccccCCcCCcccc-
Q 001384 586 QNFSMVHLGFNQFDGKLPSQFDQ------LPLIVLNLTRNNFSG----EIPSEFGNIKCLQNLDLSYNNFSGPFPASFN- 654 (1088)
Q Consensus 586 ~~L~~L~l~~N~l~g~~p~~~~~------l~l~~l~l~~N~l~~----~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~- 654 (1088)
++|+.|+|++|++++..+..+.. -.|+.|+|++|++++ .+|..+..+++|+.|||++|++++.--..+.
T Consensus 341 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~ 420 (461)
T 1z7x_W 341 RFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVE 420 (461)
T ss_dssp SSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHH
T ss_pred CCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHH
Confidence 77788888888777554443332 267888888888886 7888888889999999999988754111111
Q ss_pred ----cccccceeeccCCCC
Q 001384 655 ----NLTELSKLNISYNPL 669 (1088)
Q Consensus 655 ----~l~~L~~l~l~~N~l 669 (1088)
...+|+.|++.++.+
T Consensus 421 ~l~~~~~~L~~L~~~~~~~ 439 (461)
T 1z7x_W 421 SVRQPGCLLEQLVLYDIYW 439 (461)
T ss_dssp HHTSTTCCCCEEECTTCCC
T ss_pred HhccCCcchhheeeccccc
Confidence 123566666666665
No 297
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=8.9e-30 Score=288.12 Aligned_cols=287 Identities=22% Similarity=0.289 Sum_probs=217.9
Q ss_pred CCCcEEEccCccccCCCccccCCCCCCCEEeCCCCcCCccCcccccCCCCCcEEEcCCCcCCCchhHhhhcccccceeec
Q 001384 268 RNLVVLNLFGNNFSGPIPAEIGSISGLEALFLGKNNFLSVIPESLLNLSKLEVLDLSSNNFGGEVQKIFGRFTQVKILAL 347 (1088)
Q Consensus 268 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 347 (1088)
.+|+.+++++|.++ .+|..+. ++|+.|+|++|.+.+..|..|.++++|++|+|++|.+++..+..|+
T Consensus 33 c~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~---------- 99 (332)
T 2ft3_A 33 CHLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFS---------- 99 (332)
T ss_dssp EETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGST----------
T ss_pred ccCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhh----------
Confidence 36899999999988 6777664 6899999999999888888899999999999999988876665544
Q ss_pred CcCcccCCCCCccccCCCCcCEEEccCCccCCCCCccccCCcCcceeeccccccCCcCCcccCCCCCCcEEEccCCcCC-
Q 001384 348 HSNSYIDGMNSSGILKLPNISRLDLSHNNFTGPLPVEISQMRSLKFLILAHNRFNGSIPAVYGNMPNLQTLDLSFNELT- 426 (1088)
Q Consensus 348 ~~n~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~- 426 (1088)
++++|++|+|++|+++ .+|..+. ++|++|++++|++++..+..|.++++|++|++++|+++
T Consensus 100 ---------------~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~ 161 (332)
T 2ft3_A 100 ---------------PLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN 161 (332)
T ss_dssp ---------------TCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBG
T ss_pred ---------------CcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcccc
Confidence 5677888888888888 6676665 79999999999999777778999999999999999996
Q ss_pred -CCCCccccCCCCCcEEEccccccccCCCccccCCCCCCeEEccCCcCccCCCchhhccCCCCCccccccccCCcccccC
Q 001384 427 -GPIPPSIGNLTSLLWLMLANNSLSGEIPGEIGNCTSLLWLNLSNNKLSGNIPPEVMTIGRNARPTFEANQRNGERTIAG 505 (1088)
Q Consensus 427 -~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~~~~~~~~~~~~~~~n~~~~~~~~~~ 505 (1088)
+..|..+..+ +|++|++++|+++ .+|..+. ++|++|++++|++++..|.
T Consensus 162 ~~~~~~~~~~l-~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~-------------------------- 211 (332)
T 2ft3_A 162 SGFEPGAFDGL-KLNYLRISEAKLT-GIPKDLP--ETLNELHLDHNKIQAIELE-------------------------- 211 (332)
T ss_dssp GGSCTTSSCSC-CCSCCBCCSSBCS-SCCSSSC--SSCSCCBCCSSCCCCCCTT--------------------------
T ss_pred CCCCcccccCC-ccCEEECcCCCCC-ccCcccc--CCCCEEECCCCcCCccCHH--------------------------
Confidence 3678888888 9999999999999 4777664 7889999988888743222
Q ss_pred CccccccccccCCCCCCCcceeeehhccccchhhhhcccCCcccccccCCCcccceeeeceEEccCCccccccCcccccC
Q 001384 506 SSECLSMKRWIPADYPPFSFVYTILTRKSCRSLWDRLLKGTGIFPVCLPGLASRTFQITGYLQLSGNQLSGELSPDIGKL 585 (1088)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~l~~L~l~~N~l~g~~p~~~~~l 585 (1088)
.+..+
T Consensus 212 ---------------------------------------------------------------------------~l~~l 216 (332)
T 2ft3_A 212 ---------------------------------------------------------------------------DLLRY 216 (332)
T ss_dssp ---------------------------------------------------------------------------SSTTC
T ss_pred ---------------------------------------------------------------------------HhcCC
Confidence 23334
Q ss_pred CCccEEeccccccccCCCCcccCc-cceEEEccCCcccccCCccccCCccCcEEEccccccCCcCCcccccc------cc
Q 001384 586 QNFSMVHLGFNQFDGKLPSQFDQL-PLIVLNLTRNNFSGEIPSEFGNIKCLQNLDLSYNNFSGPFPASFNNL------TE 658 (1088)
Q Consensus 586 ~~L~~L~l~~N~l~g~~p~~~~~l-~l~~l~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~l------~~ 658 (1088)
++|+.|+|++|++++..|..++.+ .|+.|+|++|+++ .+|..++.+++|+.|+|++|+|++..+..|..+ .+
T Consensus 217 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~ 295 (332)
T 2ft3_A 217 SKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAY 295 (332)
T ss_dssp TTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCC
T ss_pred CCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcccccccccccc
Confidence 455555555555555445455554 4666666666666 788889999999999999999997666666653 67
Q ss_pred cceeeccCCCCccccCCCC--CcccccccCccCCC
Q 001384 659 LSKLNISYNPLVSGTIPST--GQLATFEKTSYLGD 691 (1088)
Q Consensus 659 L~~l~l~~N~l~~g~ip~~--~~~~~~~~~~~~~n 691 (1088)
|+.|++++|++....++.. ..+..+....+.+|
T Consensus 296 l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 296 YNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp BSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred ccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 9999999999965566543 23333444334443
No 298
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=4e-34 Score=339.78 Aligned_cols=376 Identities=19% Similarity=0.135 Sum_probs=208.5
Q ss_pred eeEEecccccccccccccc-ccCCccCCeeeCCCCCCCC----CcCccCCCCCCCcEEECccccccCcccCCCCCCCcee
Q 001384 80 RVNGLNLTDWNISGDIFNN-FSALTQLSYLDLSRNTFSG----SIPDDLSSCRSLKYLNLSHNILSGDLNLSGLRSLEIL 154 (1088)
Q Consensus 80 ~v~~L~L~~~~l~~~~~~~-l~~l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L 154 (1088)
+++.|+|++++++...... +..+++|++|+|++|.+++ .++..+..+++|++|+|++|.+
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l--------------- 68 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNEL--------------- 68 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCC---------------
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcC---------------
Confidence 3445555555544432222 4445555555555555543 2334444445555555555544
Q ss_pred ecccccccccccCchhhhcc----cceEEeccCccCCC----CCCccccCCCCCcEEEccCccccccccc--------cC
Q 001384 155 DLSVNRIHGEISFSFPAICE----KLVVANLSLNNLTG----RIDTCFDGCLNLRYLDLSSNNFRGNIWN--------GL 218 (1088)
Q Consensus 155 ~Ls~N~l~~~~~~~~~~~~~----~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~Ls~N~l~~~~~~--------~l 218 (1088)
++..+..+...+. +|++|+|++|+++. .++..+..+++|++|+|++|.+++..+. ..
T Consensus 69 -------~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~ 141 (461)
T 1z7x_W 69 -------GDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQ 141 (461)
T ss_dssp -------HHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTT
T ss_pred -------ChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCC
Confidence 4333333333333 35555555555542 3345556666666666666666542221 12
Q ss_pred cccceecccCcccccccc---cccccCCCccCEEEcCCCcccccCccccc-----CCCCCcEEEccCccccCC----Ccc
Q 001384 219 AQLVEFSVSENVLSGVVS---SSVFKENCSLEIFDLSENEFIGDFPGEVS-----NCRNLVVLNLFGNNFSGP----IPA 286 (1088)
Q Consensus 219 ~~L~~L~L~~n~l~~~~~---~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~-----~l~~L~~L~L~~N~l~~~----~p~ 286 (1088)
++|++|++++|.+++... ...+..+++|++|++++|.+++..+..+. ..++|++|+|++|.+++. ++.
T Consensus 142 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~ 221 (461)
T 1z7x_W 142 CRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCG 221 (461)
T ss_dssp CCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHH
T ss_pred CcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHH
Confidence 345666666665554321 22344456666666666666543333332 245666666666666643 355
Q ss_pred ccCCCCCCCEEeCCCCcCCccC-----cccccCCCCCcEEEcCCCcCCCc----hhHhhhcccccceeecCcCcccCCCC
Q 001384 287 EIGSISGLEALFLGKNNFLSVI-----PESLLNLSKLEVLDLSSNNFGGE----VQKIFGRFTQVKILALHSNSYIDGMN 357 (1088)
Q Consensus 287 ~~~~l~~L~~L~L~~N~l~~~~-----p~~l~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~n~~~~~~~ 357 (1088)
.+..+++|++|+|++|.+.... +..+..+++|++|+|++|.+++. ++..+..+++|+.|++++|.+.+..
T Consensus 222 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~- 300 (461)
T 1z7x_W 222 IVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG- 300 (461)
T ss_dssp HHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHH-
T ss_pred HHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHH-
Confidence 5556666666666666655432 12223456666777776666654 3445555666666666666532210
Q ss_pred Cccc-----cCCCCcCEEEccCCccCCC----CCccccCCcCcceeeccccccCCcCCcccCC-----CCCCcEEEccCC
Q 001384 358 SSGI-----LKLPNISRLDLSHNNFTGP----LPVEISQMRSLKFLILAHNRFNGSIPAVYGN-----MPNLQTLDLSFN 423 (1088)
Q Consensus 358 ~~~~-----~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~-----l~~L~~L~L~~N 423 (1088)
...+ ...++|++|+|++|.+++. ++..+..+++|++|++++|++++..+..+.. .++|++|++++|
T Consensus 301 ~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 380 (461)
T 1z7x_W 301 ARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC 380 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCC
Confidence 1111 1235788888888887754 4555666788888888888877554443332 567888888888
Q ss_pred cCCC----CCCccccCCCCCcEEEccccccccCCCcccc-----CCCCCCeEEccCCcCccCCC
Q 001384 424 ELTG----PIPPSIGNLTSLLWLMLANNSLSGEIPGEIG-----NCTSLLWLNLSNNKLSGNIP 478 (1088)
Q Consensus 424 ~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-----~l~~L~~L~L~~N~l~g~ip 478 (1088)
++++ .+|..+..+++|++|+|++|++++.-...+. ...+|+.|++.++.+....+
T Consensus 381 ~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~ 444 (461)
T 1z7x_W 381 DVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEME 444 (461)
T ss_dssp CCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHH
T ss_pred CCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHH
Confidence 8875 6777777788888888888888753111111 23457777777776664333
No 299
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=2.7e-29 Score=283.92 Aligned_cols=289 Identities=20% Similarity=0.258 Sum_probs=192.6
Q ss_pred CCCcEEEccCccccCCCccccCCCCCCCEEeCCCCcCCccCcccccCCCCCcEEEcCCCcCCCchhHhhhcccccceeec
Q 001384 268 RNLVVLNLFGNNFSGPIPAEIGSISGLEALFLGKNNFLSVIPESLLNLSKLEVLDLSSNNFGGEVQKIFGRFTQVKILAL 347 (1088)
Q Consensus 268 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 347 (1088)
.+|+.++++++.++ .+|..+. ++|+.|+|++|++++..+..|.++++|++|+|++|.+++..|..|
T Consensus 31 c~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----------- 96 (330)
T 1xku_A 31 CHLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF----------- 96 (330)
T ss_dssp EETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTT-----------
T ss_pred CCCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHh-----------
Confidence 36788888888887 5665543 577888888888877766677777788888888777776555443
Q ss_pred CcCcccCCCCCccccCCCCcCEEEccCCccCCCCCccccCCcCcceeeccccccCCcCCcccCCCCCCcEEEccCCcCCC
Q 001384 348 HSNSYIDGMNSSGILKLPNISRLDLSHNNFTGPLPVEISQMRSLKFLILAHNRFNGSIPAVYGNMPNLQTLDLSFNELTG 427 (1088)
Q Consensus 348 ~~n~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 427 (1088)
..+++|++|+|++|+++ .+|..+. ++|++|++++|++++..+..+.++++|++|++++|+++.
T Consensus 97 --------------~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 159 (330)
T 1xku_A 97 --------------APLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS 159 (330)
T ss_dssp --------------TTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG
T ss_pred --------------cCCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCc
Confidence 34566777777777776 4555544 678888888888876666677778888888888887753
Q ss_pred --CCCccccCCCCCcEEEccccccccCCCccccCCCCCCeEEccCCcCccCCCchhhccCCCCCccccccccCCcccccC
Q 001384 428 --PIPPSIGNLTSLLWLMLANNSLSGEIPGEIGNCTSLLWLNLSNNKLSGNIPPEVMTIGRNARPTFEANQRNGERTIAG 505 (1088)
Q Consensus 428 --~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~~~~~~~~~~~~~~~n~~~~~~~~~~ 505 (1088)
..+..+.++++|++|++++|+++ .+|..+. ++|++|++++|++++..|..+..+
T Consensus 160 ~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l--------------------- 215 (330)
T 1xku_A 160 SGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGL--------------------- 215 (330)
T ss_dssp GGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTC---------------------
T ss_pred cCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCC---------------------
Confidence 56667777777777777777777 4665553 677777777777775444333211
Q ss_pred CccccccccccCCCCCCCcceeeehhccccchhhhhcccCCcccccccCCCcccceeeeceEEccCCccccccCcccccC
Q 001384 506 SSECLSMKRWIPADYPPFSFVYTILTRKSCRSLWDRLLKGTGIFPVCLPGLASRTFQITGYLQLSGNQLSGELSPDIGKL 585 (1088)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~l~~L~l~~N~l~g~~p~~~~~l 585 (1088)
..+++|+|++|++++..|..++.+
T Consensus 216 --------------------------------------------------------~~L~~L~Ls~n~l~~~~~~~~~~l 239 (330)
T 1xku_A 216 --------------------------------------------------------NNLAKLGLSFNSISAVDNGSLANT 239 (330)
T ss_dssp --------------------------------------------------------TTCCEEECCSSCCCEECTTTGGGS
T ss_pred --------------------------------------------------------CCCCEEECCCCcCceeChhhccCC
Confidence 123457777777776666667777
Q ss_pred CCccEEeccccccccCCCCcccCc-cceEEEccCCcccccCCccccCC------ccCcEEEccccccCC--cCCcccccc
Q 001384 586 QNFSMVHLGFNQFDGKLPSQFDQL-PLIVLNLTRNNFSGEIPSEFGNI------KCLQNLDLSYNNFSG--PFPASFNNL 656 (1088)
Q Consensus 586 ~~L~~L~l~~N~l~g~~p~~~~~l-~l~~l~l~~N~l~~~~p~~~~~l------~~L~~L~l~~N~l~g--~~p~~~~~l 656 (1088)
++|+.|+|++|+++ .+|..+..+ .|++|+|++|++++.-+..|+.. ..|+.|+|++|.+.. ..|..|..+
T Consensus 240 ~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~ 318 (330)
T 1xku_A 240 PHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCV 318 (330)
T ss_dssp TTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTC
T ss_pred CCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccc
Confidence 77777777777777 666666655 46677777777775444455432 556677777776642 345566666
Q ss_pred cccceeeccCCC
Q 001384 657 TELSKLNISYNP 668 (1088)
Q Consensus 657 ~~L~~l~l~~N~ 668 (1088)
.+++.++|++|+
T Consensus 319 ~~l~~l~L~~N~ 330 (330)
T 1xku_A 319 YVRAAVQLGNYK 330 (330)
T ss_dssp CCGGGEEC----
T ss_pred cceeEEEecccC
Confidence 777777776663
No 300
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=5.5e-32 Score=332.13 Aligned_cols=409 Identities=14% Similarity=0.092 Sum_probs=235.6
Q ss_pred chhhHHHHHHHHhhcccCCCCCcccccccCCCCCCcccCCceeCCCCceeEEeccccccccccccccccCCccCCeeeCC
Q 001384 32 LETDREVLSNLRSFLENNNPVNEGHYMQWNQSSSPCEWPGIICSPDKARVNGLNLTDWNISGDIFNNFSALTQLSYLDLS 111 (1088)
Q Consensus 32 ~~~d~~~l~~~~~~~~~~~~~~~~~~~sW~~~~~~C~W~gv~C~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls 111 (1088)
.++| .|..+.+++.+ ...+.++ +.-|++|.++.+.. .+. +.+.+ .....++..+..+++|++|+|+
T Consensus 16 LPde--il~~I~~~L~~-----~~d~~~~--s~vck~W~~~~~~~--~~~--l~~~~-~~~~~~~~~~~~~~~L~~L~L~ 81 (592)
T 3ogk_B 16 TVDD--VIEQVMTYITD-----PKDRDSA--SLVCRRWFKIDSET--REH--VTMAL-CYTATPDRLSRRFPNLRSLKLK 81 (592)
T ss_dssp CGGG--THHHHHTTCCC-----HHHHHHH--TTSCHHHHHHHHHH--CCE--EEESC-GGGSCHHHHHHHCTTCSEEEEE
T ss_pred CCHH--HHHHHHHhcCC-----HHHHHHH--HHHhHHHHHhhhcc--ccE--EEEee-ccccChHHHHHhCCCCeEEEec
Confidence 4555 56677777731 1112233 23466899996532 122 22222 1223334456678889999998
Q ss_pred CCCC---CCCcCccCC------------CCCCCcEEECccccccCcc--cCCC-CC-CCceeeccccc-ccccccCchhh
Q 001384 112 RNTF---SGSIPDDLS------------SCRSLKYLNLSHNILSGDL--NLSG-LR-SLEILDLSVNR-IHGEISFSFPA 171 (1088)
Q Consensus 112 ~n~l---~~~~p~~l~------------~l~~L~~L~Ls~n~l~~~~--~l~~-l~-~L~~L~Ls~N~-l~~~~~~~~~~ 171 (1088)
++.. .+.+|..++ .+++|++|+|++|.+++.. .+.. ++ +|++|+|++|. ++......+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~ 161 (592)
T 3ogk_B 82 GKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVT 161 (592)
T ss_dssp CSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHH
T ss_pred CCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHh
Confidence 7532 134444433 5666666666666655321 2222 22 36666666654 22111112222
Q ss_pred hcccceEEeccCccCCCC----CCccccCCCCCcEEEccCccccccccccCcccceecccCcccccccccccccCCCccC
Q 001384 172 ICEKLVVANLSLNNLTGR----IDTCFDGCLNLRYLDLSSNNFRGNIWNGLAQLVEFSVSENVLSGVVSSSVFKENCSLE 247 (1088)
Q Consensus 172 ~~~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 247 (1088)
.+++|++|+|++|.+++. ++..+..+++|++|++++|.+++.. .......+..+++|+
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~------------------~~~l~~~~~~~~~L~ 223 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKIS------------------PKDLETIARNCRSLV 223 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCC------------------HHHHHHHHHHCTTCC
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccC------------------HHHHHHHHhhCCCCc
Confidence 345555555555555443 2223334455555555555443100 001122344556777
Q ss_pred EEEcCCCcccccCcccccCCCCCcEEEccCcccc---CCCccccCCCCCCCEEeCCCCcCCccCcccccCCCCCcEEEcC
Q 001384 248 IFDLSENEFIGDFPGEVSNCRNLVVLNLFGNNFS---GPIPAEIGSISGLEALFLGKNNFLSVIPESLLNLSKLEVLDLS 324 (1088)
Q Consensus 248 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~---~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~ 324 (1088)
.|+|++|.+.+ +|..+.++++|++|+++++... +..+..+..+++|+.|+++++. ...+|..+..+++|++|+|+
T Consensus 224 ~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls 301 (592)
T 3ogk_B 224 SVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLL 301 (592)
T ss_dssp EEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEET
T ss_pred EEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHHHhhcCCCcEEecC
Confidence 77777777664 5666777777777777653322 2344556667777777777653 34456667777778888888
Q ss_pred CCcCCCchh-HhhhcccccceeecCcCcccCCCCCccccCCCCcCEEEcc-----------CCccCCCC-CccccCCcCc
Q 001384 325 SNNFGGEVQ-KIFGRFTQVKILALHSNSYIDGMNSSGILKLPNISRLDLS-----------HNNFTGPL-PVEISQMRSL 391 (1088)
Q Consensus 325 ~N~l~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls-----------~N~l~~~~-p~~l~~l~~L 391 (1088)
+|.+++... ..+..+++|+.|+++ +.+.+......+..+++|++|+|+ .|.+++.. +.....+++|
T Consensus 302 ~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L 380 (592)
T 3ogk_B 302 YALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQEL 380 (592)
T ss_dssp TCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTC
T ss_pred CCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccC
Confidence 777665443 446777778877777 333222222233456778888888 35555322 2223457888
Q ss_pred ceeeccccccCCcCCcccCC-CCCCcEEEcc----CCcCCCC-----CCccccCCCCCcEEEcccc--ccccCCCccccC
Q 001384 392 KFLILAHNRFNGSIPAVYGN-MPNLQTLDLS----FNELTGP-----IPPSIGNLTSLLWLMLANN--SLSGEIPGEIGN 459 (1088)
Q Consensus 392 ~~L~L~~N~l~~~~p~~~~~-l~~L~~L~L~----~N~l~~~-----~p~~~~~l~~L~~L~L~~N--~l~~~~p~~l~~ 459 (1088)
++|+++.|++++..+..++. +++|+.|+++ .|++++. ++..+.++++|++|+|++| .+++..+..++.
T Consensus 381 ~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~ 460 (592)
T 3ogk_B 381 EYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQ 460 (592)
T ss_dssp SEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHH
T ss_pred eEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHH
Confidence 88888888888766666655 7888888885 6677753 3334666888888888743 366655555543
Q ss_pred -CCCCCeEEccCCcCcc
Q 001384 460 -CTSLLWLNLSNNKLSG 475 (1088)
Q Consensus 460 -l~~L~~L~L~~N~l~g 475 (1088)
+++|++|+|++|++++
T Consensus 461 ~~~~L~~L~L~~n~l~~ 477 (592)
T 3ogk_B 461 YSPNVRWMLLGYVGESD 477 (592)
T ss_dssp SCTTCCEEEECSCCSSH
T ss_pred hCccceEeeccCCCCCH
Confidence 7888888888888764
No 301
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.96 E-value=2.4e-28 Score=295.71 Aligned_cols=299 Identities=23% Similarity=0.244 Sum_probs=179.7
Q ss_pred ccccccCCCCCCcccCCceeCCCCceeEEeccccccccccccccccCCccCCeeeCCCCCCCCCcCccCCCCCCCcEEEC
Q 001384 55 GHYMQWNQSSSPCEWPGIICSPDKARVNGLNLTDWNISGDIFNNFSALTQLSYLDLSRNTFSGSIPDDLSSCRSLKYLNL 134 (1088)
Q Consensus 55 ~~~~sW~~~~~~C~W~gv~C~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 134 (1088)
..+++|..+.+||.|.|..|.-... ......++++|++++|.++ .+|..+. ++|++|+|
T Consensus 10 ~~w~~W~~~~~~~~~~~r~~~~~~~------------------~~c~~~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L 68 (622)
T 3g06_A 10 AVWSAWRRAAPAEESRGRAAVVQKM------------------RACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVI 68 (622)
T ss_dssp CHHHHHHHTCCGGGHHHHHHHHHHH------------------HHHHHHCCCEEECCSSCCS-CCCSCCC--TTCSEEEE
T ss_pred HHHHHHHhcCCcchhccccccCccc------------------ccccCCCCcEEEecCCCcC-ccChhhC--CCCcEEEe
Confidence 4577898888999998764421000 0011123556666666666 5555544 56666666
Q ss_pred ccccccCcccCCCCCCCceeecccccccccccCchhhhcccceEEeccCccCCCCCCccccCCCCCcEEEccCccccccc
Q 001384 135 SHNILSGDLNLSGLRSLEILDLSVNRIHGEISFSFPAICEKLVVANLSLNNLTGRIDTCFDGCLNLRYLDLSSNNFRGNI 214 (1088)
Q Consensus 135 s~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~ 214 (1088)
++|.|+.... .+++|++|+|++|+|++ +|. .+++|++|+|++|++++ +
T Consensus 69 ~~N~l~~lp~--~l~~L~~L~Ls~N~l~~-lp~----------------------------~l~~L~~L~Ls~N~l~~-l 116 (622)
T 3g06_A 69 PDNNLTSLPA--LPPELRTLEVSGNQLTS-LPV----------------------------LPPGLLELSIFSNPLTH-L 116 (622)
T ss_dssp CSCCCSCCCC--CCTTCCEEEECSCCCSC-CCC----------------------------CCTTCCEEEECSCCCCC-C
T ss_pred cCCCCCCCCC--cCCCCCEEEcCCCcCCc-CCC----------------------------CCCCCCEEECcCCcCCC-C
Confidence 6666554332 34455555555555442 111 23344444444443331 0
Q ss_pred cccCcccceecccCcccccccccccccCCCccCEEEcCCCcccccCcccccCCCCCcEEEccCccccCCCccccCCCCCC
Q 001384 215 WNGLAQLVEFSVSENVLSGVVSSSVFKENCSLEIFDLSENEFIGDFPGEVSNCRNLVVLNLFGNNFSGPIPAEIGSISGL 294 (1088)
Q Consensus 215 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 294 (1088)
+. .+++|+.|++++|++++ +|.. +++|++|+|++|++++ +|. .+.+|
T Consensus 117 ~~-------------------------~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L 163 (622)
T 3g06_A 117 PA-------------------------LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSEL 163 (622)
T ss_dssp CC-------------------------CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTC
T ss_pred CC-------------------------CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCC
Confidence 00 11234444444444432 3322 2556666666666653 332 23456
Q ss_pred CEEeCCCCcCCccCcccccCCCCCcEEEcCCCcCCCchhHhhhcccccceeecCcCcccCCCCCccccCCCCcCEEEccC
Q 001384 295 EALFLGKNNFLSVIPESLLNLSKLEVLDLSSNNFGGEVQKIFGRFTQVKILALHSNSYIDGMNSSGILKLPNISRLDLSH 374 (1088)
Q Consensus 295 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~ 374 (1088)
+.|++++|.+++ +| ..+++|+.|+|++|.+++.+. .+++|+.|++++
T Consensus 164 ~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~l~~-----------------------------~~~~L~~L~L~~ 210 (622)
T 3g06_A 164 CKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLASLPT-----------------------------LPSELYKLWAYN 210 (622)
T ss_dssp CEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCCCC-----------------------------CCTTCCEEECCS
T ss_pred CEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCCCCC-----------------------------ccchhhEEECcC
Confidence 666666666655 33 334666777777776654211 124677777777
Q ss_pred CccCCCCCccccCCcCcceeeccccccCCcCCcccCCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEccccccccCCC
Q 001384 375 NNFTGPLPVEISQMRSLKFLILAHNRFNGSIPAVYGNMPNLQTLDLSFNELTGPIPPSIGNLTSLLWLMLANNSLSGEIP 454 (1088)
Q Consensus 375 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 454 (1088)
|.++ .+|.. +++|+.|+|++|+|++ +| ..+++|+.|+|++|+|+ .+|. .+++|++|+|++|+|+ .+|
T Consensus 211 N~l~-~l~~~---~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp 277 (622)
T 3g06_A 211 NRLT-SLPAL---PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLP 277 (622)
T ss_dssp SCCS-SCCCC---CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCC
T ss_pred Cccc-ccCCC---CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCC
Confidence 7777 45532 3678888888888884 66 45678889999999988 5776 5678999999999998 788
Q ss_pred ccccCCCCCCeEEccCCcCccCCCchhhccC
Q 001384 455 GEIGNCTSLLWLNLSNNKLSGNIPPEVMTIG 485 (1088)
Q Consensus 455 ~~l~~l~~L~~L~L~~N~l~g~ip~~~~~~~ 485 (1088)
..+.++++|+.|+|++|+++|.+|..+..+.
T Consensus 278 ~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 278 ESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp GGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred HHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 8899999999999999999988887776543
No 302
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=6.9e-28 Score=271.36 Aligned_cols=224 Identities=20% Similarity=0.259 Sum_probs=202.5
Q ss_pred CCCcCEEEccCCccCCCCCccccCCcCcceeeccccccCCcCCcccCCCCCCcEEEccCCcCCCCCCccccCCCCCcEEE
Q 001384 364 LPNISRLDLSHNNFTGPLPVEISQMRSLKFLILAHNRFNGSIPAVYGNMPNLQTLDLSFNELTGPIPPSIGNLTSLLWLM 443 (1088)
Q Consensus 364 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 443 (1088)
.++++.|+|++|.++ .+|..+.++++|++|+|++|.++ .+|..++++++|++|+|++|+++ .+|..++++++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 467899999999998 78888999999999999999999 88999999999999999999999 7899999999999999
Q ss_pred ccccccccCCCccccC---------CCCCCeEEccCCcCccCCCchhhccCCCCCccccccccCCcccccCCcccccccc
Q 001384 444 LANNSLSGEIPGEIGN---------CTSLLWLNLSNNKLSGNIPPEVMTIGRNARPTFEANQRNGERTIAGSSECLSMKR 514 (1088)
Q Consensus 444 L~~N~l~~~~p~~l~~---------l~~L~~L~L~~N~l~g~ip~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~ 514 (1088)
|++|++.+.+|..++. +++|++|+|++|+++ .+|..+..+.
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~----------------------------- 206 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQ----------------------------- 206 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCT-----------------------------
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCC-----------------------------
Confidence 9999988899988765 999999999999998 7887654332
Q ss_pred ccCCCCCCCcceeeehhccccchhhhhcccCCcccccccCCCcccceeeeceEEccCCccccccCcccccCCCccEEecc
Q 001384 515 WIPADYPPFSFVYTILTRKSCRSLWDRLLKGTGIFPVCLPGLASRTFQITGYLQLSGNQLSGELSPDIGKLQNFSMVHLG 594 (1088)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~l~~L~l~~N~l~g~~p~~~~~l~~L~~L~l~ 594 (1088)
.+++|+|++|++++ +|..++.+++|+.|+|+
T Consensus 207 ------------------------------------------------~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls 237 (328)
T 4fcg_A 207 ------------------------------------------------NLKSLKIRNSPLSA-LGPAIHHLPKLEELDLR 237 (328)
T ss_dssp ------------------------------------------------TCCEEEEESSCCCC-CCGGGGGCTTCCEEECT
T ss_pred ------------------------------------------------CCCEEEccCCCCCc-CchhhccCCCCCEEECc
Confidence 24578999999995 77789999999999999
Q ss_pred ccccccCCCCcccCc-cceEEEccCCcccccCCccccCCccCcEEEccccccCCcCCcccccccccceeeccCCCC
Q 001384 595 FNQFDGKLPSQFDQL-PLIVLNLTRNNFSGEIPSEFGNIKCLQNLDLSYNNFSGPFPASFNNLTELSKLNISYNPL 669 (1088)
Q Consensus 595 ~N~l~g~~p~~~~~l-~l~~l~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~l~~L~~l~l~~N~l 669 (1088)
+|++.+.+|..++.+ .|+.|+|++|++.+.+|..++++++|+.|+|++|++.|.+|+.++++++|+.+++..|.+
T Consensus 238 ~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 238 GCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp TCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred CCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 999999999999988 799999999999999999999999999999999999999999999999999999997766
No 303
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=3.2e-28 Score=277.91 Aligned_cols=280 Identities=20% Similarity=0.256 Sum_probs=156.1
Q ss_pred CEEEcCCCcccccCcccccCCCCCcEEEccCccccCCCccccCCCCCCCEEeCCCCcCCccCcccccCCCCCcEEEcCCC
Q 001384 247 EIFDLSENEFIGDFPGEVSNCRNLVVLNLFGNNFSGPIPAEIGSISGLEALFLGKNNFLSVIPESLLNLSKLEVLDLSSN 326 (1088)
Q Consensus 247 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N 326 (1088)
...++++|+++ .+|..+. ++|++|++++|++++..+..+..+++|++|+|++|++++..|..|.++++|++|+|++|
T Consensus 34 ~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (353)
T 2z80_A 34 GICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN 110 (353)
T ss_dssp SEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred eEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC
Confidence 34555555555 3444433 35566666666655444445555555555555555555555555555555555555555
Q ss_pred cCCCchhHhhhcccccceeecCcCcccCCCCCccccCCCCcCEEEccCCccCCCCCc--cccCCcCcceeecccc-ccCC
Q 001384 327 NFGGEVQKIFGRFTQVKILALHSNSYIDGMNSSGILKLPNISRLDLSHNNFTGPLPV--EISQMRSLKFLILAHN-RFNG 403 (1088)
Q Consensus 327 ~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~--~l~~l~~L~~L~L~~N-~l~~ 403 (1088)
++++..+..|+ ++++|++|+|++|++++ +|. .+..+++|++|++++| .+++
T Consensus 111 ~l~~~~~~~~~-------------------------~l~~L~~L~L~~n~l~~-l~~~~~~~~l~~L~~L~l~~n~~~~~ 164 (353)
T 2z80_A 111 YLSNLSSSWFK-------------------------PLSSLTFLNLLGNPYKT-LGETSLFSHLTKLQILRVGNMDTFTK 164 (353)
T ss_dssp CCSSCCHHHHT-------------------------TCTTCSEEECTTCCCSS-SCSSCSCTTCTTCCEEEEEESSSCCE
T ss_pred cCCcCCHhHhC-------------------------CCccCCEEECCCCCCcc-cCchhhhccCCCCcEEECCCCccccc
Confidence 55544333332 34455555555555553 332 4555556666666655 3443
Q ss_pred cCCcccCCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEccccccccCCCcc-ccCCCCCCeEEccCCcCccCCCchhh
Q 001384 404 SIPAVYGNMPNLQTLDLSFNELTGPIPPSIGNLTSLLWLMLANNSLSGEIPGE-IGNCTSLLWLNLSNNKLSGNIPPEVM 482 (1088)
Q Consensus 404 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~L~~N~l~g~ip~~~~ 482 (1088)
..|..++++++|++|++++|++++..|..++++++|++|++++|+++ .+|.. +..+++|++|++++|++++..+..+.
T Consensus 165 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 243 (353)
T 2z80_A 165 IQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELS 243 (353)
T ss_dssp ECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC---
T ss_pred cCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCccccccccccc
Confidence 44455555555555555555555555555555555555555555554 23322 23355555555555555421111000
Q ss_pred ccCCCCCccccccccCCcccccCCccccccccccCCCCCCCcceeeehhccccchhhhhcccCCcccccccCCCccccee
Q 001384 483 TIGRNARPTFEANQRNGERTIAGSSECLSMKRWIPADYPPFSFVYTILTRKSCRSLWDRLLKGTGIFPVCLPGLASRTFQ 562 (1088)
Q Consensus 483 ~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~ 562 (1088)
T Consensus 244 -------------------------------------------------------------------------------- 243 (353)
T 2z80_A 244 -------------------------------------------------------------------------------- 243 (353)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeceEEccCCccccccCcccccCCCccEEeccccccccCCCCcccCccceEEEccCCcccccCCccccCCccCcEEEccc
Q 001384 563 ITGYLQLSGNQLSGELSPDIGKLQNFSMVHLGFNQFDGKLPSQFDQLPLIVLNLTRNNFSGEIPSEFGNIKCLQNLDLSY 642 (1088)
Q Consensus 563 ~l~~L~l~~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~l~l~~l~l~~N~l~~~~p~~~~~l~~L~~L~l~~ 642 (1088)
.......++.++|++|.++ +|.+. .+|+.++++++|+.|||++
T Consensus 244 ------------------~~~~~~~l~~l~L~~~~l~------------------~~~l~-~l~~~l~~l~~L~~L~Ls~ 286 (353)
T 2z80_A 244 ------------------TGETNSLIKKFTFRNVKIT------------------DESLF-QVMKLLNQISGLLELEFSR 286 (353)
T ss_dssp ---------------------CCCCCCEEEEESCBCC------------------HHHHH-HHHHHHHTCTTCCEEECCS
T ss_pred ------------------cccccchhhcccccccccc------------------Ccchh-hhHHHHhcccCCCEEECCC
Confidence 0011223444444444433 23333 6788899999999999999
Q ss_pred cccCCcCCcc-cccccccceeeccCCCCccccCC
Q 001384 643 NNFSGPFPAS-FNNLTELSKLNISYNPLVSGTIP 675 (1088)
Q Consensus 643 N~l~g~~p~~-~~~l~~L~~l~l~~N~l~~g~ip 675 (1088)
|+|+ .+|.. |+++++|+.|++++|++ .+..|
T Consensus 287 N~l~-~i~~~~~~~l~~L~~L~L~~N~~-~~~~~ 318 (353)
T 2z80_A 287 NQLK-SVPDGIFDRLTSLQKIWLHTNPW-DCSCP 318 (353)
T ss_dssp SCCC-CCCTTTTTTCTTCCEEECCSSCB-CCCHH
T ss_pred CCCC-ccCHHHHhcCCCCCEEEeeCCCc-cCcCC
Confidence 9998 67766 58899999999999999 55555
No 304
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=5.2e-30 Score=314.59 Aligned_cols=335 Identities=18% Similarity=0.150 Sum_probs=237.3
Q ss_pred CcCccCCCCCCCcEEECccccccC---cc--cC------------CCCCCCceeecccccccccccCchhhhccc-ceEE
Q 001384 118 SIPDDLSSCRSLKYLNLSHNILSG---DL--NL------------SGLRSLEILDLSVNRIHGEISFSFPAICEK-LVVA 179 (1088)
Q Consensus 118 ~~p~~l~~l~~L~~L~Ls~n~l~~---~~--~l------------~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~-L~~L 179 (1088)
.++..+..+++|++|+|+++.... .. .+ ..+++|++|+|++|.+++..+..+...+++ |++|
T Consensus 64 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L 143 (592)
T 3ogk_B 64 TPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETL 143 (592)
T ss_dssp CHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEE
T ss_pred ChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEE
Confidence 445566788999999998864311 00 11 156777777777777776655555554444 7777
Q ss_pred eccCcc-CCC-CCCccccCCCCCcEEEccCccccccccccCcccceecccCcccccccccccccCCCccCEEEcCCCccc
Q 001384 180 NLSLNN-LTG-RIDTCFDGCLNLRYLDLSSNNFRGNIWNGLAQLVEFSVSENVLSGVVSSSVFKENCSLEIFDLSENEFI 257 (1088)
Q Consensus 180 ~L~~n~-l~~-~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~ 257 (1088)
+|++|. ++. ..+....++++|++|+|++|.+++..... ....+..+++|++|+|++|.++
T Consensus 144 ~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~------------------l~~~~~~~~~L~~L~L~~n~~~ 205 (592)
T 3ogk_B 144 KLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKW------------------LHELAQHNTSLEVLNFYMTEFA 205 (592)
T ss_dssp EEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHH------------------HHHHHHHCCCCCEEECTTCCCS
T ss_pred ECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhH------------------HHHHHhcCCCccEEEeeccCCC
Confidence 776665 211 11122235666666666666654321110 1123445678999999999887
Q ss_pred ----ccCcccccCCCCCcEEEccCccccCCCccccCCCCCCCEEeCCCCcCC---ccCcccccCCCCCcEEEcCCCcCCC
Q 001384 258 ----GDFPGEVSNCRNLVVLNLFGNNFSGPIPAEIGSISGLEALFLGKNNFL---SVIPESLLNLSKLEVLDLSSNNFGG 330 (1088)
Q Consensus 258 ----~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~---~~~p~~l~~l~~L~~L~L~~N~l~~ 330 (1088)
+.++..+.++++|++|+|++|.+.+ ++..+..+++|++|+++.+... ...+..+..+++|+.|+++++. .+
T Consensus 206 ~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~ 283 (592)
T 3ogk_B 206 KISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PN 283 (592)
T ss_dssp SCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TT
T ss_pred ccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hh
Confidence 3556667789999999999999985 7788999999999999864332 3345678889999999999864 45
Q ss_pred chhHhhhcccccceeecCcCcccCCCCCccccCCCCcCEEEccCCccCCCCCccccCCcCcceeecc-----------cc
Q 001384 331 EVQKIFGRFTQVKILALHSNSYIDGMNSSGILKLPNISRLDLSHNNFTGPLPVEISQMRSLKFLILA-----------HN 399 (1088)
Q Consensus 331 ~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~-----------~N 399 (1088)
.++..+..+++|+.|++++|.+........+..+++|+.|+++++-..+.++..+..+++|++|+++ .|
T Consensus 284 ~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~ 363 (592)
T 3ogk_B 284 EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEG 363 (592)
T ss_dssp TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTC
T ss_pred HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccC
Confidence 6778889999999999999984333333445789999999999443333444445678999999999 36
Q ss_pred ccCCc-CCcccCCCCCCcEEEccCCcCCCCCCccccC-CCCCcEEEcc----ccccccC-----CCccccCCCCCCeEEc
Q 001384 400 RFNGS-IPAVYGNMPNLQTLDLSFNELTGPIPPSIGN-LTSLLWLMLA----NNSLSGE-----IPGEIGNCTSLLWLNL 468 (1088)
Q Consensus 400 ~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~-l~~L~~L~L~----~N~l~~~-----~p~~l~~l~~L~~L~L 468 (1088)
.+++. ++.....+++|++|+++.|++++..+..++. +++|++|+++ .|.+++. ++..+.++++|++|+|
T Consensus 364 ~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L 443 (592)
T 3ogk_B 364 LVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAF 443 (592)
T ss_dssp CCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEE
T ss_pred ccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEE
Confidence 77643 3333456899999999999999877777776 8999999996 7788863 4444778999999999
Q ss_pred cCCc
Q 001384 469 SNNK 472 (1088)
Q Consensus 469 ~~N~ 472 (1088)
+++.
T Consensus 444 ~~~~ 447 (592)
T 3ogk_B 444 YLRQ 447 (592)
T ss_dssp ECCG
T ss_pred ecCC
Confidence 8543
No 305
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=5e-28 Score=276.26 Aligned_cols=227 Identities=19% Similarity=0.178 Sum_probs=179.0
Q ss_pred cccceecccCcccccccccccccCCCccCEEEcCCCcccccCcccccCCCCCcEEEccCccccCCCccccCCCCCCCEEe
Q 001384 219 AQLVEFSVSENVLSGVVSSSVFKENCSLEIFDLSENEFIGDFPGEVSNCRNLVVLNLFGNNFSGPIPAEIGSISGLEALF 298 (1088)
Q Consensus 219 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 298 (1088)
+.....+++++.++.. |...+ ++|++|++++|++++..+..+.++++|++|+|++|++++..|..|+.+++|++|+
T Consensus 31 ~~~~~c~~~~~~l~~i-P~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (353)
T 2z80_A 31 DRNGICKGSSGSLNSI-PSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD 106 (353)
T ss_dssp CTTSEEECCSTTCSSC-CTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCeEeeCCCCCcccc-ccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence 3344577888888853 44333 4899999999999987777999999999999999999988888999999999999
Q ss_pred CCCCcCCccCcccccCCCCCcEEEcCCCcCCCchhHhhhcccccceeecCcCcccCCCCCccccCCCCcCEEEccCC-cc
Q 001384 299 LGKNNFLSVIPESLLNLSKLEVLDLSSNNFGGEVQKIFGRFTQVKILALHSNSYIDGMNSSGILKLPNISRLDLSHN-NF 377 (1088)
Q Consensus 299 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~N-~l 377 (1088)
|++|++++..+..+.++++|++|+|++|++++..+ ...+..+++|++|++++| .+
T Consensus 107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~------------------------~~~~~~l~~L~~L~l~~n~~~ 162 (353)
T 2z80_A 107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGE------------------------TSLFSHLTKLQILRVGNMDTF 162 (353)
T ss_dssp CCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCS------------------------SCSCTTCTTCCEEEEEESSSC
T ss_pred CCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCc------------------------hhhhccCCCCcEEECCCCccc
Confidence 99999998766679999999999999999885433 023446677888888887 46
Q ss_pred CCCCCccccCCcCcceeeccccccCCcCCcccCCCCCCcEEEccCCcCCCCCCcc-ccCCCCCcEEEccccccccCCCcc
Q 001384 378 TGPLPVEISQMRSLKFLILAHNRFNGSIPAVYGNMPNLQTLDLSFNELTGPIPPS-IGNLTSLLWLMLANNSLSGEIPGE 456 (1088)
Q Consensus 378 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~p~~ 456 (1088)
++..|..+..+++|++|++++|++++..|..++.+++|++|++++|+++ .+|.. +..+++|++|++++|++++..+..
T Consensus 163 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 241 (353)
T 2z80_A 163 TKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSE 241 (353)
T ss_dssp CEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC-
T ss_pred cccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCccccccccc
Confidence 6555678888899999999999998888888999999999999999987 45554 445889999999999998755544
Q ss_pred cc---CCCCCCeEEccCCcCc
Q 001384 457 IG---NCTSLLWLNLSNNKLS 474 (1088)
Q Consensus 457 l~---~l~~L~~L~L~~N~l~ 474 (1088)
+. ..+.++.++|++|.++
T Consensus 242 l~~~~~~~~l~~l~L~~~~l~ 262 (353)
T 2z80_A 242 LSTGETNSLIKKFTFRNVKIT 262 (353)
T ss_dssp -----CCCCCCEEEEESCBCC
T ss_pred cccccccchhhcccccccccc
Confidence 33 2445555665555544
No 306
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=5.7e-27 Score=275.88 Aligned_cols=231 Identities=21% Similarity=0.228 Sum_probs=210.1
Q ss_pred CccCEEEcCCCcccccCcccccCCCCCcEEEccCccccCCCccccCCCCCCCEEeCCCCcCCccCcccccCCCCCcEEEc
Q 001384 244 CSLEIFDLSENEFIGDFPGEVSNCRNLVVLNLFGNNFSGPIPAEIGSISGLEALFLGKNNFLSVIPESLLNLSKLEVLDL 323 (1088)
Q Consensus 244 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 323 (1088)
++++.|+|++|++++..+..|.++++|++|+|++|++++..+..|.++++|++|+|++|+++...+..|..+++|++|+|
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 47888999999988888888999999999999999998777788999999999999999998877778899999999999
Q ss_pred CCCcCCCchhHhhhcccccceeecCcCcccCCCCCccccCCCCcCEEEccCCccCCCCCccccCCcCcceeeccccccCC
Q 001384 324 SSNNFGGEVQKIFGRFTQVKILALHSNSYIDGMNSSGILKLPNISRLDLSHNNFTGPLPVEISQMRSLKFLILAHNRFNG 403 (1088)
Q Consensus 324 ~~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 403 (1088)
++|.++...+..|..+++|+.|++++|..+.......|.++++|++|+|++|+++ .+| .+..+++|+.|+|++|++++
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~ 221 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSA 221 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCE
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCc
Confidence 9999998888889999999999999987777777888899999999999999999 566 58899999999999999998
Q ss_pred cCCcccCCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEccccccccCCCccccCCCCCCeEEccCCcCccC
Q 001384 404 SIPAVYGNMPNLQTLDLSFNELTGPIPPSIGNLTSLLWLMLANNSLSGEIPGEIGNCTSLLWLNLSNNKLSGN 476 (1088)
Q Consensus 404 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ 476 (1088)
..|..|.++++|+.|+|++|++++..|..+.++++|++|+|++|++++..+..+..+++|+.|+|++|++...
T Consensus 222 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd 294 (440)
T 3zyj_A 222 IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCN 294 (440)
T ss_dssp ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECS
T ss_pred cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCC
Confidence 8899999999999999999999988889999999999999999999977777889999999999999999853
No 307
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=5.8e-27 Score=276.80 Aligned_cols=231 Identities=21% Similarity=0.200 Sum_probs=210.6
Q ss_pred CccCEEEcCCCcccccCcccccCCCCCcEEEccCccccCCCccccCCCCCCCEEeCCCCcCCccCcccccCCCCCcEEEc
Q 001384 244 CSLEIFDLSENEFIGDFPGEVSNCRNLVVLNLFGNNFSGPIPAEIGSISGLEALFLGKNNFLSVIPESLLNLSKLEVLDL 323 (1088)
Q Consensus 244 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 323 (1088)
+++++|+|++|++++..|..|.++++|++|+|++|++++..+..|.++++|++|+|++|++++..+..|..+++|++|+|
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 47888999999998888889999999999999999999888888999999999999999998877778889999999999
Q ss_pred CCCcCCCchhHhhhcccccceeecCcCcccCCCCCccccCCCCcCEEEccCCccCCCCCccccCCcCcceeeccccccCC
Q 001384 324 SSNNFGGEVQKIFGRFTQVKILALHSNSYIDGMNSSGILKLPNISRLDLSHNNFTGPLPVEISQMRSLKFLILAHNRFNG 403 (1088)
Q Consensus 324 ~~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 403 (1088)
++|+++...+..|..+++|+.|++++|..+..+....|.++++|++|+|++|++++ +| .+..+++|+.|+|++|++++
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~ 232 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPE 232 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSE
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcc
Confidence 99999988888899999999999999877777778888999999999999999995 45 58899999999999999998
Q ss_pred cCCcccCCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEccccccccCCCccccCCCCCCeEEccCCcCccC
Q 001384 404 SIPAVYGNMPNLQTLDLSFNELTGPIPPSIGNLTSLLWLMLANNSLSGEIPGEIGNCTSLLWLNLSNNKLSGN 476 (1088)
Q Consensus 404 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ 476 (1088)
..|..|.++++|+.|+|++|++++..|..+.++++|++|+|++|++++..+..+..+++|+.|+|++|++.+.
T Consensus 233 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCD 305 (452)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECS
T ss_pred cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCC
Confidence 8899999999999999999999988899999999999999999999977777889999999999999999854
No 308
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=9.3e-28 Score=268.27 Aligned_cols=248 Identities=23% Similarity=0.262 Sum_probs=152.6
Q ss_pred EEeccCccCCCCCCccccCCCCCcEEEccCccccccccccCcccceecccCcccccccccccccCCCccCEEEcCCCccc
Q 001384 178 VANLSLNNLTGRIDTCFDGCLNLRYLDLSSNNFRGNIWNGLAQLVEFSVSENVLSGVVSSSVFKENCSLEIFDLSENEFI 257 (1088)
Q Consensus 178 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~ 257 (1088)
.+++++++++..+... .++|++|+|++|+++ .++...|..+++|++|+|++|+++
T Consensus 11 ~l~c~~~~l~~ip~~~---~~~l~~L~L~~n~l~----------------------~i~~~~~~~l~~L~~L~L~~n~l~ 65 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGI---PSSATRLELESNKLQ----------------------SLPHGVFDKLTQLTKLSLSSNGLS 65 (306)
T ss_dssp EEECCSSCCSSCCSCC---CTTCCEEECCSSCCC----------------------CCCTTTTTTCTTCSEEECCSSCCC
T ss_pred EEEcCCCCcccCCCCC---CCCCCEEECCCCccC----------------------ccCHhHhhccccCCEEECCCCccC
Confidence 4555566655443321 135555555555544 233445556666666677666665
Q ss_pred c--cCcccccCCCCCcEEEccCccccCCCccccCCCCCCCEEeCCCCcCCccCc-ccccCCCCCcEEEcCCCcCCCchhH
Q 001384 258 G--DFPGEVSNCRNLVVLNLFGNNFSGPIPAEIGSISGLEALFLGKNNFLSVIP-ESLLNLSKLEVLDLSSNNFGGEVQK 334 (1088)
Q Consensus 258 ~--~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~~~ 334 (1088)
. ..|..+..+++|++|+|++|.+. .+|..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.+..+.
T Consensus 66 ~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 144 (306)
T 2z66_A 66 FKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 144 (306)
T ss_dssp EEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTT
T ss_pred cccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchh
Confidence 2 23455556677777777777766 455566667777777777776665543 4566666777777777766655444
Q ss_pred hhhcccccceeecCcCcccCCCCCccccCCCCcCEEEccCCccCC-CCCccccCCcCcceeeccccccCCcCCcccCCCC
Q 001384 335 IFGRFTQVKILALHSNSYIDGMNSSGILKLPNISRLDLSHNNFTG-PLPVEISQMRSLKFLILAHNRFNGSIPAVYGNMP 413 (1088)
Q Consensus 335 ~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 413 (1088)
.|+ .+++|++|+|++|.+++ .+|..+..+++|++|++++|++++..|..+..++
T Consensus 145 ~~~-------------------------~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 199 (306)
T 2z66_A 145 IFN-------------------------GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 199 (306)
T ss_dssp TTT-------------------------TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred hcc-------------------------cCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCC
Confidence 443 45556666666666654 3556666666666666666666655566666666
Q ss_pred CCcEEEccCCcCCCCCCccccCCCCCcEEEccccccccCCCccccCCC-CCCeEEccCCcCccC
Q 001384 414 NLQTLDLSFNELTGPIPPSIGNLTSLLWLMLANNSLSGEIPGEIGNCT-SLLWLNLSNNKLSGN 476 (1088)
Q Consensus 414 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~L~~N~l~g~ 476 (1088)
+|++|+|++|++++..+..+..+++|++|+|++|++++..|..+..++ +|++|+|++|++++.
T Consensus 200 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 200 SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp TCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred CCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 666666666666655555566666666677776666666666666663 667777777766654
No 309
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=1.5e-27 Score=266.69 Aligned_cols=228 Identities=22% Similarity=0.221 Sum_probs=124.9
Q ss_pred CEEEcCCCcccccCcccccCCCCCcEEEccCccccCCCccccCCCCCCCEEeCCCCcCCcc--CcccccCCCCCcEEEcC
Q 001384 247 EIFDLSENEFIGDFPGEVSNCRNLVVLNLFGNNFSGPIPAEIGSISGLEALFLGKNNFLSV--IPESLLNLSKLEVLDLS 324 (1088)
Q Consensus 247 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~--~p~~l~~l~~L~~L~L~ 324 (1088)
+.++.+++.++ .+|..+. ++|++|+|++|+++...+..|..+++|++|+|++|.++.. .|..+..+++|++|+|+
T Consensus 10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 34555555554 3444332 4566666666666533333355666666666666665532 24455555666666666
Q ss_pred CCcCCCchhHhhhcccccceeecCcCcccCCCCCccccCCCCcCEEEccCCccCCCCCccccCCcCcceeeccccccCC-
Q 001384 325 SNNFGGEVQKIFGRFTQVKILALHSNSYIDGMNSSGILKLPNISRLDLSHNNFTGPLPVEISQMRSLKFLILAHNRFNG- 403 (1088)
Q Consensus 325 ~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~- 403 (1088)
+|.+.+. +..+..+++|+.|++++|.+........+..+++|++|++++|.+++..|..+..+++|++|++++|.+++
T Consensus 87 ~n~i~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 165 (306)
T 2z66_A 87 FNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 165 (306)
T ss_dssp SCSEEEE-EEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred CCccccC-hhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc
Confidence 6655532 22233344444444443333222222334455666666666666665555566666666666666666654
Q ss_pred cCCcccCCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEccccccccCCCccccCCCCCCeEEccCCcCccCCC
Q 001384 404 SIPAVYGNMPNLQTLDLSFNELTGPIPPSIGNLTSLLWLMLANNSLSGEIPGEIGNCTSLLWLNLSNNKLSGNIP 478 (1088)
Q Consensus 404 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip 478 (1088)
.+|..+..+++|++|++++|++++..|..+.++++|++|+|++|++++..+..+..+++|++|+|++|++++..|
T Consensus 166 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 240 (306)
T 2z66_A 166 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 240 (306)
T ss_dssp EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSS
T ss_pred cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCH
Confidence 355666666666666666666665555566666666666666666665444455666666666666666654444
No 310
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=1.6e-26 Score=255.38 Aligned_cols=200 Identities=22% Similarity=0.235 Sum_probs=111.0
Q ss_pred CEEEcCCCcccccCcccccCCCCCcEEEccCccccCCCccccCCCCCCCEEeCCCCcCCccCcccccCCCCCcEEEcCCC
Q 001384 247 EIFDLSENEFIGDFPGEVSNCRNLVVLNLFGNNFSGPIPAEIGSISGLEALFLGKNNFLSVIPESLLNLSKLEVLDLSSN 326 (1088)
Q Consensus 247 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N 326 (1088)
+.++.+++.++ .+|..+ .++|++|+|++|++++..+..|..+++|++|+|++|.+++..|..|.++++|++|+|++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 56777777766 445443 357777777777777665566777777777777777777766777777777777777777
Q ss_pred c-CCCchhHhhhcccccceeecCcCcccCCCCCccccCCCCcCEEEccCCccCCCCCccccCCcCcceeeccccccCCcC
Q 001384 327 N-FGGEVQKIFGRFTQVKILALHSNSYIDGMNSSGILKLPNISRLDLSHNNFTGPLPVEISQMRSLKFLILAHNRFNGSI 405 (1088)
Q Consensus 327 ~-l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 405 (1088)
. +....+..|..++ +|++|+|++|.+++..|..+.++++|++|++++|++++..
T Consensus 91 ~~l~~~~~~~~~~l~-------------------------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 145 (285)
T 1ozn_A 91 AQLRSVDPATFHGLG-------------------------RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALP 145 (285)
T ss_dssp TTCCCCCTTTTTTCT-------------------------TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCccccCHHHhcCCc-------------------------CCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccC
Confidence 5 5555455444444 4444444444444444444444444444444444444333
Q ss_pred CcccCCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEccccccccCCCccccCCCCCCeEEccCCcCc
Q 001384 406 PAVYGNMPNLQTLDLSFNELTGPIPPSIGNLTSLLWLMLANNSLSGEIPGEIGNCTSLLWLNLSNNKLS 474 (1088)
Q Consensus 406 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 474 (1088)
+..++.+++|++|+|++|++++..+..+.++++|++|+|++|++++..|..++++++|+.|++++|+++
T Consensus 146 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 214 (285)
T 1ozn_A 146 DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 214 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred HhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCC
Confidence 333444444444444444444333333444444444444444444444444444444444444444444
No 311
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=8.6e-26 Score=273.32 Aligned_cols=268 Identities=24% Similarity=0.286 Sum_probs=173.7
Q ss_pred ccCEEEcCCCcccccCcccccCCCCCcEEEccCccccCCCccccCCCCCCCEEeCCCCcCCccCcccccCCCCCcEEEcC
Q 001384 245 SLEIFDLSENEFIGDFPGEVSNCRNLVVLNLFGNNFSGPIPAEIGSISGLEALFLGKNNFLSVIPESLLNLSKLEVLDLS 324 (1088)
Q Consensus 245 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~ 324 (1088)
+++.|++++|.++ .+|..+. ++|++|+|++|+|+ .+|. .+++|++|+|++|++++ +|. .+++|++|+|+
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEEC
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECc
Confidence 5788888888887 6676665 78888888888887 4554 46778888888888765 444 56777788888
Q ss_pred CCcCCCchhHhhhcccccceeecCcCcccCCCCCccccCCCCcCEEEccCCccCCCCCccccCCcCcceeeccccccCCc
Q 001384 325 SNNFGGEVQKIFGRFTQVKILALHSNSYIDGMNSSGILKLPNISRLDLSHNNFTGPLPVEISQMRSLKFLILAHNRFNGS 404 (1088)
Q Consensus 325 ~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 404 (1088)
+|.+++.+. .+++|+.|++++|++++ +|.. +++|++|+|++|+++ .
T Consensus 110 ~N~l~~l~~-----------------------------~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~-~ 155 (622)
T 3g06_A 110 SNPLTHLPA-----------------------------LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLA-S 155 (622)
T ss_dssp SCCCCCCCC-----------------------------CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-C
T ss_pred CCcCCCCCC-----------------------------CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCC-C
Confidence 777764322 23566777777777763 4543 367777777777777 3
Q ss_pred CCcccCCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEccccccccCCCccccCCCCCCeEEccCCcCccCCCchhhcc
Q 001384 405 IPAVYGNMPNLQTLDLSFNELTGPIPPSIGNLTSLLWLMLANNSLSGEIPGEIGNCTSLLWLNLSNNKLSGNIPPEVMTI 484 (1088)
Q Consensus 405 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~~~~~ 484 (1088)
+|. .+++|+.|++++|+++ .+| ..+++|+.|+|++|++++ +|.. +++|+.|++++|.++ .+|..+
T Consensus 156 l~~---~~~~L~~L~L~~N~l~-~l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~~~--- 220 (622)
T 3g06_A 156 LPA---LPSELCKLWAYNNQLT-SLP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPALP--- 220 (622)
T ss_dssp CCC---CCTTCCEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCCCC---
T ss_pred cCC---ccCCCCEEECCCCCCC-CCc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCCCC---
Confidence 443 2456777777777777 355 345677777777777773 5543 366777777777776 333210
Q ss_pred CCCCCccccccccCCcccccCCccccccccccCCCCCCCcceeeehhccccchhhhhcccCCcccccccCCCcccceeee
Q 001384 485 GRNARPTFEANQRNGERTIAGSSECLSMKRWIPADYPPFSFVYTILTRKSCRSLWDRLLKGTGIFPVCLPGLASRTFQIT 564 (1088)
Q Consensus 485 ~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~l 564 (1088)
..+
T Consensus 221 -----------------------------------------------------------------------------~~L 223 (622)
T 3g06_A 221 -----------------------------------------------------------------------------SGL 223 (622)
T ss_dssp -----------------------------------------------------------------------------TTC
T ss_pred -----------------------------------------------------------------------------CCC
Confidence 013
Q ss_pred ceEEccCCccccccCcccccCCCccEEeccccccccCCCCcccCccceEEEccCCcccccCCccccCCccCcEEEccccc
Q 001384 565 GYLQLSGNQLSGELSPDIGKLQNFSMVHLGFNQFDGKLPSQFDQLPLIVLNLTRNNFSGEIPSEFGNIKCLQNLDLSYNN 644 (1088)
Q Consensus 565 ~~L~l~~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~l~l~~l~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~ 644 (1088)
++|+|++|+|++ +| ..+++|+.|+|++|+|+ .+|.. .-.|+.|+|++|+|+ .+|..|+++++|+.|+|++|+
T Consensus 224 ~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~~--~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 224 KELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPML--PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp CEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCCC--CTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCC
T ss_pred CEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCcc--cccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCC
Confidence 456677777764 55 34466677777777776 45541 124566666666666 666666666666667777666
Q ss_pred cCCcCCccccccc
Q 001384 645 FSGPFPASFNNLT 657 (1088)
Q Consensus 645 l~g~~p~~~~~l~ 657 (1088)
++|.+|..+..++
T Consensus 296 l~~~~~~~l~~L~ 308 (622)
T 3g06_A 296 LSERTLQALREIT 308 (622)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CCCcCHHHHHhcc
Confidence 6666666555544
No 312
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=7.1e-28 Score=269.73 Aligned_cols=253 Identities=22% Similarity=0.242 Sum_probs=189.8
Q ss_pred ccccCCCCCcEEEccCccccccccccC-cccceecccCccccccccccccc-------CCCccCEEEcCCCcccccCccc
Q 001384 192 TCFDGCLNLRYLDLSSNNFRGNIWNGL-AQLVEFSVSENVLSGVVSSSVFK-------ENCSLEIFDLSENEFIGDFPGE 263 (1088)
Q Consensus 192 ~~l~~l~~L~~L~Ls~N~l~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~-------~l~~L~~L~Ls~n~l~~~~p~~ 263 (1088)
+.++..++|++|++++|.+ .+|..+ ..|+.|++++|.++....+..+. .+++|++|+|++|++++.+|..
T Consensus 37 ~~~~~~~~L~~l~l~~n~l--~~p~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 37 ELYGGGRSLEYLLKRVDTE--ADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEEEEECTTHHHHCCTT--CCCHHHHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred EEEccCCCceeEeeccccc--ccHHHHHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 3456777888888988888 455433 23788888888875432222222 5677888888888887777776
Q ss_pred c--cCCCCCcEEEccCccccCCCccccCCC-----CCCCEEeCCCCcCCccCcccccCCCCCcEEEcCCCcCCCchh--H
Q 001384 264 V--SNCRNLVVLNLFGNNFSGPIPAEIGSI-----SGLEALFLGKNNFLSVIPESLLNLSKLEVLDLSSNNFGGEVQ--K 334 (1088)
Q Consensus 264 l--~~l~~L~~L~L~~N~l~~~~p~~~~~l-----~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~--~ 334 (1088)
+ ..+++|++|+|++|++++. |..++.+ ++|++|+|++|++.+..|..|+++++|++|+|++|++.+..+ .
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 193 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS 193 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred HHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence 5 7778888888888888765 6666665 778888888888777777777777888888888887765422 1
Q ss_pred hhhcccccceeecCcCcccCCCCCccccCCCCcCEEEccCCccCC--CCC-ccccCCcCcceeeccccccCCcCC-cccC
Q 001384 335 IFGRFTQVKILALHSNSYIDGMNSSGILKLPNISRLDLSHNNFTG--PLP-VEISQMRSLKFLILAHNRFNGSIP-AVYG 410 (1088)
Q Consensus 335 ~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~p-~~l~~l~~L~~L~L~~N~l~~~~p-~~~~ 410 (1088)
.+ .+..+++|++|+|++|++++ .++ ..+..+++|++|+|++|++++..| ..+.
T Consensus 194 ~~-----------------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 250 (312)
T 1wwl_A 194 AL-----------------------CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD 250 (312)
T ss_dssp HS-----------------------CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCC
T ss_pred HH-----------------------HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhh
Confidence 11 12467788888999998883 122 334577899999999999997765 5567
Q ss_pred CCCCCcEEEccCCcCCCCCCccccCCCCCcEEEccccccccCCCccccCCCCCCeEEccCCcCcc
Q 001384 411 NMPNLQTLDLSFNELTGPIPPSIGNLTSLLWLMLANNSLSGEIPGEIGNCTSLLWLNLSNNKLSG 475 (1088)
Q Consensus 411 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g 475 (1088)
.+++|++|+|++|+|+ .+|..+. ++|++|+|++|+|++. |. +..+++|++|+|++|++++
T Consensus 251 ~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 251 WPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred hcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 7899999999999999 7888877 8999999999999964 66 8999999999999999985
No 313
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=1.4e-27 Score=267.23 Aligned_cols=262 Identities=20% Similarity=0.157 Sum_probs=171.6
Q ss_pred ccccCCCCCCcccCCceeCCCCceeEEeccccccccccccccccCCccCCeeeCCCCCC-CCCcCccCC-------CCCC
Q 001384 57 YMQWNQSSSPCEWPGIICSPDKARVNGLNLTDWNISGDIFNNFSALTQLSYLDLSRNTF-SGSIPDDLS-------SCRS 128 (1088)
Q Consensus 57 ~~sW~~~~~~C~W~gv~C~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l-~~~~p~~l~-------~l~~ 128 (1088)
..+|.....|+.|..+.......+++.|+++++.+ .+|..+... |++|+|++|.+ .+.+|..+. ++++
T Consensus 21 ~~~~~~~~~c~~~~~~~~~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~ 96 (312)
T 1wwl_A 21 KPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISG 96 (312)
T ss_dssp SCCGGGGGGSSSCSEEEEEEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSC
T ss_pred ccchHHHhhhhccccEEEEccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCC
Confidence 44687667777777665443345778888999998 667666554 89999999999 456777665 7899
Q ss_pred CcEEECccccccCcc--cC--CCCCCCceeecccccccccccCchhhh----cccceEEeccCccCCCCCCccccCCCCC
Q 001384 129 LKYLNLSHNILSGDL--NL--SGLRSLEILDLSVNRIHGEISFSFPAI----CEKLVVANLSLNNLTGRIDTCFDGCLNL 200 (1088)
Q Consensus 129 L~~L~Ls~n~l~~~~--~l--~~l~~L~~L~Ls~N~l~~~~~~~~~~~----~~~L~~L~L~~n~l~~~~~~~l~~l~~L 200 (1088)
|++|+|++|.+++.. .+ ..+++|++|+|++|++++. |..+... +++|++|+|++|++++..+..|+++++|
T Consensus 97 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L 175 (312)
T 1wwl_A 97 LQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPAL 175 (312)
T ss_dssp CCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSC
T ss_pred ccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCC
Confidence 999999999998643 33 7899999999999999987 6555544 2789999999999999998999999999
Q ss_pred cEEEccCccccccc-------cccCcccceecccCccccc--ccccccccCCCccCEEEcCCCcccccCcccccCCCCCc
Q 001384 201 RYLDLSSNNFRGNI-------WNGLAQLVEFSVSENVLSG--VVSSSVFKENCSLEIFDLSENEFIGDFPGEVSNCRNLV 271 (1088)
Q Consensus 201 ~~L~Ls~N~l~~~~-------~~~l~~L~~L~L~~n~l~~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 271 (1088)
++|+|++|++.+.+ +..+++|++|++++|.+++ .++...+. ++++|+
T Consensus 176 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~------------------------~l~~L~ 231 (312)
T 1wwl_A 176 STLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAA------------------------ARVQLQ 231 (312)
T ss_dssp CEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHH------------------------TTCCCS
T ss_pred CEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHh------------------------cCCCCC
Confidence 99999999876531 1334444444444444442 12223333 445555
Q ss_pred EEEccCccccCCCc-cccCCCCCCCEEeCCCCcCCccCcccccCCCCCcEEEcCCCcCCCchhHhhhcccccceeecCcC
Q 001384 272 VLNLFGNNFSGPIP-AEIGSISGLEALFLGKNNFLSVIPESLLNLSKLEVLDLSSNNFGGEVQKIFGRFTQVKILALHSN 350 (1088)
Q Consensus 272 ~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n 350 (1088)
+|+|++|++++.+| ..+..+++|++|+|++|+++ .+|..+. ++|++|+|++|++++. |. +..+++|+.|++++|
T Consensus 232 ~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 232 GLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGN 306 (312)
T ss_dssp EEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTC
T ss_pred EEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCC
Confidence 55555555554432 23334455555555555554 3344443 4555555555555544 22 455555555555555
Q ss_pred cc
Q 001384 351 SY 352 (1088)
Q Consensus 351 ~~ 352 (1088)
.+
T Consensus 307 ~l 308 (312)
T 1wwl_A 307 PF 308 (312)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 314
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=8.3e-28 Score=269.80 Aligned_cols=268 Identities=18% Similarity=0.137 Sum_probs=170.6
Q ss_pred CceeecccccccccccCchhhhcccceEEeccCccCCCCCCccccCCCCCcEEEccCccccccccccCcccceecccCcc
Q 001384 151 LEILDLSVNRIHGEISFSFPAICEKLVVANLSLNNLTGRIDTCFDGCLNLRYLDLSSNNFRGNIWNGLAQLVEFSVSENV 230 (1088)
Q Consensus 151 L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~n~ 230 (1088)
++.++++.+.+... +..+...+++|++|+|++|++++..|..|..+++|++|+|++|++++.
T Consensus 12 l~i~~ls~~~l~~~-~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~----------------- 73 (317)
T 3o53_A 12 YKIEKVTDSSLKQA-LASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYET----------------- 73 (317)
T ss_dssp EEEESCCTTTHHHH-HHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEE-----------------
T ss_pred eeEeeccccchhhh-HHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcc-----------------
Confidence 44556666666422 223334455677777777777776666677777777777776666431
Q ss_pred cccccccccccCCCccCEEEcCCCcccccCcccccCCCCCcEEEccCccccCCCccccCCCCCCCEEeCCCCcCCccCcc
Q 001384 231 LSGVVSSSVFKENCSLEIFDLSENEFIGDFPGEVSNCRNLVVLNLFGNNFSGPIPAEIGSISGLEALFLGKNNFLSVIPE 310 (1088)
Q Consensus 231 l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 310 (1088)
. .|..+++|++|+|++|++++.. ..++|++|++++|++++..+. .+++|++|++++|++++..+.
T Consensus 74 ----~---~~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~ 138 (317)
T 3o53_A 74 ----L---DLESLSTLRTLDLNNNYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDL 138 (317)
T ss_dssp ----E---EETTCTTCCEEECCSSEEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGB
T ss_pred ----h---hhhhcCCCCEEECcCCcccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccch
Confidence 1 1555667777777777766322 236777777777777644332 245677777777777666666
Q ss_pred cccCCCCCcEEEcCCCcCCCchhHhhhcccccceeecCcCcccCCCCCccccCCCCcCEEEccCCccCCCCCccccCCcC
Q 001384 311 SLLNLSKLEVLDLSSNNFGGEVQKIFGRFTQVKILALHSNSYIDGMNSSGILKLPNISRLDLSHNNFTGPLPVEISQMRS 390 (1088)
Q Consensus 311 ~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 390 (1088)
.+..+++|++|+|++|.+++..+..+. ..+++|++|+|++|.+++. | ....+++
T Consensus 139 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~------------------------~~l~~L~~L~L~~N~l~~~-~-~~~~l~~ 192 (317)
T 3o53_A 139 DEGCRSRVQYLDLKLNEIDTVNFAELA------------------------ASSDTLEHLNLQYNFIYDV-K-GQVVFAK 192 (317)
T ss_dssp CTGGGSSEEEEECTTSCCCEEEGGGGG------------------------GGTTTCCEEECTTSCCCEE-E-CCCCCTT
T ss_pred hhhccCCCCEEECCCCCCCcccHHHHh------------------------hccCcCCEEECCCCcCccc-c-ccccccc
Confidence 666667777777777766655444332 2345666666666666633 2 2234677
Q ss_pred cceeeccccccCCcCCcccCCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEccccccc-cCCCccccCCCCCCeEEcc
Q 001384 391 LKFLILAHNRFNGSIPAVYGNMPNLQTLDLSFNELTGPIPPSIGNLTSLLWLMLANNSLS-GEIPGEIGNCTSLLWLNLS 469 (1088)
Q Consensus 391 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~-~~~p~~l~~l~~L~~L~L~ 469 (1088)
|++|+|++|+++ .+|..+..+++|++|+|++|+++ .+|..+..+++|++|+|++|.++ +.+|..++.+++|+.|+++
T Consensus 193 L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 193 LKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp CCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred CCEEECCCCcCC-cchhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence 777777777777 34445777777777777777777 46777777777777777777777 5667777777777777777
Q ss_pred -CCcCccCCCc
Q 001384 470 -NNKLSGNIPP 479 (1088)
Q Consensus 470 -~N~l~g~ip~ 479 (1088)
.+.++|..|.
T Consensus 271 ~~~~l~~~~~~ 281 (317)
T 3o53_A 271 TVKKLTGQNEE 281 (317)
T ss_dssp HHHHHHSSSSC
T ss_pred CchhccCCchh
Confidence 4445554443
No 315
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=99.94 E-value=1.1e-27 Score=288.36 Aligned_cols=187 Identities=18% Similarity=0.122 Sum_probs=134.0
Q ss_pred eecccCceEEEEEEeC-CCcEEEEEEccccCc----------cchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeE
Q 001384 812 IIGKGGFGTVYRGVLP-DGREVAVKKLQREGL----------EGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEK 880 (1088)
Q Consensus 812 ~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~----------~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~ 880 (1088)
..+.|++|.+..++.. .|+.+|||++.+... ...+++.+|+++|+++. .|+||++++++++++...
T Consensus 241 ~~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~---~~~~i~~~~~~~ed~~~~ 317 (569)
T 4azs_A 241 QPYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPP---AGFDAPAVLAHGENAQSG 317 (569)
T ss_dssp C-C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCC---TTCCCCCEEEEEECSSEE
T ss_pred ccccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcC---CCCCeeEEEEEEEECCEE
Confidence 3567777777766532 588999999976421 12356899999999854 799999999999999999
Q ss_pred EEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccceeecC
Q 001384 881 ILVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARVVSA 960 (1088)
Q Consensus 881 ~lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~~~ 960 (1088)
||||||++|++|.+++.+.+++++. +|+.||+.||+|+|++ |||||||||+|||++++|.+||+|||+|+....
T Consensus 318 yLVMEyv~G~~L~d~i~~~~~l~~~---~I~~QIl~AL~ylH~~---GIIHRDIKPeNILL~~dg~vKL~DFGlAr~~~~ 391 (569)
T 4azs_A 318 WLVMEKLPGRLLSDMLAAGEEIDRE---KILGSLLRSLAALEKQ---GFWHDDVRPWNVMVDARQHARLIDFGSIVTTPQ 391 (569)
T ss_dssp EEEEECCCSEEHHHHHHTTCCCCHH---HHHHHHHHHHHHHHHT---TCEESCCCGGGEEECTTSCEEECCCTTEESCC-
T ss_pred EEEEecCCCCcHHHHHHhCCCCCHH---HHHHHHHHHHHHHHHC---CceeccCchHhEEECCCCCEEEeecccCeeCCC
Confidence 9999999999999999998888765 4889999999999999 999999999999999999999999999987653
Q ss_pred CCCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCC
Q 001384 961 GDSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRAL 1009 (1088)
Q Consensus 961 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~ 1009 (1088)
.. ......+||+.|+|||++.+ .+..++|+||+|++.+++.++..++
T Consensus 392 ~~-~~~~t~vGTp~YmAPE~l~g-~~~~~~d~~s~g~~~~~l~~~~~~~ 438 (569)
T 4azs_A 392 DC-SWPTNLVQSFFVFVNELFAE-NKSWNGFWRSAPVHPFNLPQPWSNW 438 (569)
T ss_dssp ---CCSHHHHHHHHHHHHHHC------------------CCCCTTHHHH
T ss_pred CC-ccccCceechhhccHHHhCC-CCCCcccccccccchhhhccccchh
Confidence 32 23445689999999999876 5678899999999988776655443
No 316
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=3.8e-26 Score=252.32 Aligned_cols=218 Identities=21% Similarity=0.232 Sum_probs=144.9
Q ss_pred cccCCCccCEEEcCCCcccccCcccccCCCCCcEEEccCcc-ccCCCccccCCCCCCCEEeCCCCcCCccCcccccCCCC
Q 001384 239 VFKENCSLEIFDLSENEFIGDFPGEVSNCRNLVVLNLFGNN-FSGPIPAEIGSISGLEALFLGKNNFLSVIPESLLNLSK 317 (1088)
Q Consensus 239 ~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 317 (1088)
.|..+++|++|+|++|.+++..|..+.++++|++|+|++|. +.+..|..+..+++|++|+|++|.+++..|..+.++++
T Consensus 51 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 130 (285)
T 1ozn_A 51 SFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA 130 (285)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred HcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcC
Confidence 34445555555555555555555555555555555555554 54444555555555555555555555555555555555
Q ss_pred CcEEEcCCCcCCCchhHhhhcccccceeecCcCcccCCCCCccccCCCCcCEEEccCCccCCCCCccccCCcCcceeecc
Q 001384 318 LEVLDLSSNNFGGEVQKIFGRFTQVKILALHSNSYIDGMNSSGILKLPNISRLDLSHNNFTGPLPVEISQMRSLKFLILA 397 (1088)
Q Consensus 318 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~ 397 (1088)
|++|+|++|.+++..+ ..+..+++|++|+|++|++++..+..+..+++|+.|+++
T Consensus 131 L~~L~l~~n~l~~~~~-------------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 185 (285)
T 1ozn_A 131 LQYLYLQDNALQALPD-------------------------DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLH 185 (285)
T ss_dssp CCEEECCSSCCCCCCT-------------------------TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCcccccCH-------------------------hHhccCCCccEEECCCCcccccCHHHhcCccccCEEECC
Confidence 5555555555554333 344567778888888888886555568888888888888
Q ss_pred ccccCCcCCcccCCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEccccccccCCCccccCCCCCCeEEccCCcCccCC
Q 001384 398 HNRFNGSIPAVYGNMPNLQTLDLSFNELTGPIPPSIGNLTSLLWLMLANNSLSGEIPGEIGNCTSLLWLNLSNNKLSGNI 477 (1088)
Q Consensus 398 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~i 477 (1088)
+|++++..|..+..+++|+.|++++|++++..+..+..+++|++|+|++|.+....+.. .-...++.+..+.|.+.+..
T Consensus 186 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~ 264 (285)
T 1ozn_A 186 QNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSL 264 (285)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEE
T ss_pred CCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCC
Confidence 88888777888888888888888888888655566888888888888888887543321 12234556667788888888
Q ss_pred Cchhh
Q 001384 478 PPEVM 482 (1088)
Q Consensus 478 p~~~~ 482 (1088)
|..+.
T Consensus 265 p~~l~ 269 (285)
T 1ozn_A 265 PQRLA 269 (285)
T ss_dssp SGGGT
T ss_pred chHhC
Confidence 87654
No 317
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=1.2e-26 Score=260.25 Aligned_cols=259 Identities=22% Similarity=0.223 Sum_probs=212.1
Q ss_pred eeEEeccccccccccccccccCCccCCeeeCCCCCCCCCcCccCCCCCCCcEEECccccccCcccCCCCCCCceeecccc
Q 001384 80 RVNGLNLTDWNISGDIFNNFSALTQLSYLDLSRNTFSGSIPDDLSSCRSLKYLNLSHNILSGDLNLSGLRSLEILDLSVN 159 (1088)
Q Consensus 80 ~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~N 159 (1088)
+....+++++++...+...+..+++|++|+|++|.+++..|..|+.+++|++|+|++|.+++..++..+++|++|+|++|
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n 90 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNN 90 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSS
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCC
Confidence 44556777777776666667778899999999999998888899999999999999999998777999999999999999
Q ss_pred cccccccCchhhhcccceEEeccCccCCCCCCccccCCCCCcEEEccCcccccc---ccccCcccceecccCcccccccc
Q 001384 160 RIHGEISFSFPAICEKLVVANLSLNNLTGRIDTCFDGCLNLRYLDLSSNNFRGN---IWNGLAQLVEFSVSENVLSGVVS 236 (1088)
Q Consensus 160 ~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~---~~~~l~~L~~L~L~~n~l~~~~~ 236 (1088)
++++..+ .++|++|++++|++++..+.. +++|++|++++|++++. .+..+++|++|++++|.+++..+
T Consensus 91 ~l~~l~~------~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 161 (317)
T 3o53_A 91 YVQELLV------GPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161 (317)
T ss_dssp EEEEEEE------CTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG
T ss_pred ccccccC------CCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH
Confidence 9986442 278999999999999877654 57799999999998864 34567888899999998887766
Q ss_pred cccccCCCccCEEEcCCCcccccCcccccCCCCCcEEEccCccccCCCccccCCCCCCCEEeCCCCcCCccCcccccCCC
Q 001384 237 SSVFKENCSLEIFDLSENEFIGDFPGEVSNCRNLVVLNLFGNNFSGPIPAEIGSISGLEALFLGKNNFLSVIPESLLNLS 316 (1088)
Q Consensus 237 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 316 (1088)
...+..+++|++|+|++|++++. | ....+++|++|+|++|++++ +|..+..+++|+.|+|++|++++ +|..+..++
T Consensus 162 ~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~ 237 (317)
T 3o53_A 162 AELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQ 237 (317)
T ss_dssp GGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCT
T ss_pred HHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccc-hhhHhhcCC
Confidence 66666788899999999988755 3 23358889999999999984 55568888999999999998885 577788888
Q ss_pred CCcEEEcCCCcCC-CchhHhhhcccccceeecCcCc
Q 001384 317 KLEVLDLSSNNFG-GEVQKIFGRFTQVKILALHSNS 351 (1088)
Q Consensus 317 ~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~n~ 351 (1088)
+|+.|+|++|.+. +.++..+..+++|+.+++..+.
T Consensus 238 ~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~ 273 (317)
T 3o53_A 238 NLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273 (317)
T ss_dssp TCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCCEEEccCCCccCcCHHHHHhccccceEEECCCch
Confidence 9999999999988 7777888877777777776554
No 318
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=2.8e-25 Score=262.34 Aligned_cols=247 Identities=21% Similarity=0.215 Sum_probs=176.4
Q ss_pred CceeecccccccccccCchhhhcccceEEeccCccCCCCCCccccCCCCCcEEEccCccccccccccCcccceecccCcc
Q 001384 151 LEILDLSVNRIHGEISFSFPAICEKLVVANLSLNNLTGRIDTCFDGCLNLRYLDLSSNNFRGNIWNGLAQLVEFSVSENV 230 (1088)
Q Consensus 151 L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~n~ 230 (1088)
...++.+++.++ .+|..++ +++++|+|++|++++..+..|.++++|++|+|++|++++
T Consensus 56 ~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~------------------ 113 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGIP---SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQ------------------ 113 (452)
T ss_dssp SCEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE------------------
T ss_pred CcEEEECCCCcC-ccCCCCC---CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCC------------------
Confidence 456777777766 3444433 456777777777777666667777777777666666542
Q ss_pred cccccccccccCCCccCEEEcCCCcccccCcccccCCCCCcEEEccCccccCCCccccCCCCCCCEEeCCCCc-CCccCc
Q 001384 231 LSGVVSSSVFKENCSLEIFDLSENEFIGDFPGEVSNCRNLVVLNLFGNNFSGPIPAEIGSISGLEALFLGKNN-FLSVIP 309 (1088)
Q Consensus 231 l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p 309 (1088)
++...|..+++|++|+|++|++++..+..|.++++|++|+|++|++++..+..|..+++|+.|+|++|+ +....+
T Consensus 114 ----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~ 189 (452)
T 3zyi_A 114 ----IEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISE 189 (452)
T ss_dssp ----ECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECT
T ss_pred ----cChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccCh
Confidence 223345555566666666666665555556666666666666666664444456666666666666633 333333
Q ss_pred ccccCCCCCcEEEcCCCcCCCchhHhhhcccccceeecCcCcccCCCCCccccCCCCcCEEEccCCccCCCCCccccCCc
Q 001384 310 ESLLNLSKLEVLDLSSNNFGGEVQKIFGRFTQVKILALHSNSYIDGMNSSGILKLPNISRLDLSHNNFTGPLPVEISQMR 389 (1088)
Q Consensus 310 ~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 389 (1088)
..|.++++|++|+|++|++++. ..+..+++|++|+|++|++++..|..|.+++
T Consensus 190 ~~~~~l~~L~~L~L~~n~l~~~---------------------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 242 (452)
T 3zyi_A 190 GAFEGLFNLKYLNLGMCNIKDM---------------------------PNLTPLVGLEELEMSGNHFPEIRPGSFHGLS 242 (452)
T ss_dssp TTTTTCTTCCEEECTTSCCSSC---------------------------CCCTTCTTCCEEECTTSCCSEECGGGGTTCT
T ss_pred hhccCCCCCCEEECCCCccccc---------------------------ccccccccccEEECcCCcCcccCcccccCcc
Confidence 3455666666666666655432 1255788999999999999988899999999
Q ss_pred CcceeeccccccCCcCCcccCCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEccccccc
Q 001384 390 SLKFLILAHNRFNGSIPAVYGNMPNLQTLDLSFNELTGPIPPSIGNLTSLLWLMLANNSLS 450 (1088)
Q Consensus 390 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 450 (1088)
+|+.|+|++|++++..|..|..+++|+.|+|++|+|++..+..+..+++|++|+|++|.+.
T Consensus 243 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 243 SLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred CCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 9999999999999888999999999999999999999777777899999999999999887
No 319
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=3.4e-25 Score=260.74 Aligned_cols=247 Identities=20% Similarity=0.210 Sum_probs=170.5
Q ss_pred CceeecccccccccccCchhhhcccceEEeccCccCCCCCCccccCCCCCcEEEccCccccccccccCcccceecccCcc
Q 001384 151 LEILDLSVNRIHGEISFSFPAICEKLVVANLSLNNLTGRIDTCFDGCLNLRYLDLSSNNFRGNIWNGLAQLVEFSVSENV 230 (1088)
Q Consensus 151 L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~n~ 230 (1088)
...++.+++.++ .+|..++ ++++.|+|++|++++..+..|.++++|++|+|++|++++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~------------------ 102 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRT------------------ 102 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC---TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCE------------------
T ss_pred CCEEEeCCCCcC-cCCCCCC---CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCc------------------
Confidence 456666666665 3444333 456666666666666666666666666666666665542
Q ss_pred cccccccccccCCCccCEEEcCCCcccccCcccccCCCCCcEEEccCccccCCCccccCCCCCCCEEeCCCCc-CCccCc
Q 001384 231 LSGVVSSSVFKENCSLEIFDLSENEFIGDFPGEVSNCRNLVVLNLFGNNFSGPIPAEIGSISGLEALFLGKNN-FLSVIP 309 (1088)
Q Consensus 231 l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p 309 (1088)
++...|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|+.|+|++|+ +....+
T Consensus 103 ----i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~ 178 (440)
T 3zyj_A 103 ----IEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE 178 (440)
T ss_dssp ----ECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECT
T ss_pred ----cChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCc
Confidence 223345555566666666666655444555666666666666666654444455556666666665533 222233
Q ss_pred ccccCCCCCcEEEcCCCcCCCchhHhhhcccccceeecCcCcccCCCCCccccCCCCcCEEEccCCccCCCCCccccCCc
Q 001384 310 ESLLNLSKLEVLDLSSNNFGGEVQKIFGRFTQVKILALHSNSYIDGMNSSGILKLPNISRLDLSHNNFTGPLPVEISQMR 389 (1088)
Q Consensus 310 ~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 389 (1088)
..|.++++|++|+|++|.++.. ..+..+++|++|+|++|++++..|..|.+++
T Consensus 179 ~~~~~l~~L~~L~L~~n~l~~~---------------------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 231 (440)
T 3zyj_A 179 GAFEGLSNLRYLNLAMCNLREI---------------------------PNLTPLIKLDELDLSGNHLSAIRPGSFQGLM 231 (440)
T ss_dssp TTTTTCSSCCEEECTTSCCSSC---------------------------CCCTTCSSCCEEECTTSCCCEECTTTTTTCT
T ss_pred chhhcccccCeecCCCCcCccc---------------------------cccCCCcccCEEECCCCccCccChhhhccCc
Confidence 3455555566666655555422 1255788999999999999988899999999
Q ss_pred CcceeeccccccCCcCCcccCCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEccccccc
Q 001384 390 SLKFLILAHNRFNGSIPAVYGNMPNLQTLDLSFNELTGPIPPSIGNLTSLLWLMLANNSLS 450 (1088)
Q Consensus 390 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 450 (1088)
+|+.|+|++|++++..|..|.++++|+.|+|++|+|++..+..+..+++|+.|+|++|.+.
T Consensus 232 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 232 HLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred cCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 9999999999999888999999999999999999999777777899999999999999987
No 320
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=1.6e-26 Score=274.44 Aligned_cols=83 Identities=20% Similarity=0.135 Sum_probs=52.5
Q ss_pred cCcceeeccccccCCcCCcccCCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEccccccccCCCcccc-CCCCCCeEE
Q 001384 389 RSLKFLILAHNRFNGSIPAVYGNMPNLQTLDLSFNELTGPIPPSIGNLTSLLWLMLANNSLSGEIPGEIG-NCTSLLWLN 467 (1088)
Q Consensus 389 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~L~~L~ 467 (1088)
++|+.|++++|.+++..+. .+++|+.|+|++|++++..|..++++++|++|+|++|.+++.+|..+. .+++|++|+
T Consensus 99 ~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~ 175 (487)
T 3oja_A 99 PSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175 (487)
T ss_dssp TTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEE
T ss_pred CCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEe
Confidence 4555555555555533332 245666677777776666666666677777777777777766666664 567777777
Q ss_pred ccCCcCc
Q 001384 468 LSNNKLS 474 (1088)
Q Consensus 468 L~~N~l~ 474 (1088)
|++|.++
T Consensus 176 Ls~N~l~ 182 (487)
T 3oja_A 176 LQYNFIY 182 (487)
T ss_dssp CTTSCCC
T ss_pred cCCCccc
Confidence 7777766
No 321
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=6.1e-28 Score=296.31 Aligned_cols=355 Identities=16% Similarity=0.167 Sum_probs=179.4
Q ss_pred CCcccCCceeCCCCceeEEeccccccccccccccccCCccCCeeeCCCCCCCC---CcCcc------------CCCCCCC
Q 001384 65 SPCEWPGIICSPDKARVNGLNLTDWNISGDIFNNFSALTQLSYLDLSRNTFSG---SIPDD------------LSSCRSL 129 (1088)
Q Consensus 65 ~~C~W~gv~C~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~---~~p~~------------l~~l~~L 129 (1088)
-|++|.++.. .....+++.+.... .....+.++++|++|+|+++.... ..|.. ...+++|
T Consensus 33 vck~W~~~~~----~~~~~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L 107 (594)
T 2p1m_B 33 VCKSWYEIER----WCRRKVFIGNCYAV-SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWL 107 (594)
T ss_dssp SCHHHHHHHH----HHCCEEEESSTTSS-CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTC
T ss_pred HHHHHHHhhh----hhceEEeecccccc-CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCC
Confidence 3667998822 22234445433211 112345678889999998875321 12211 2356777
Q ss_pred cEEECccccccCcc--cCC-CCCCCceeecccc-cccccccCchhhhcccceEEeccCccCCCCCCcccc----CCCCCc
Q 001384 130 KYLNLSHNILSGDL--NLS-GLRSLEILDLSVN-RIHGEISFSFPAICEKLVVANLSLNNLTGRIDTCFD----GCLNLR 201 (1088)
Q Consensus 130 ~~L~Ls~n~l~~~~--~l~-~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~----~l~~L~ 201 (1088)
++|+|++|.+++.. .+. .+++|++|+|++| .+++.....+...+++|++|+|++|.+++..+..+. .+++|+
T Consensus 108 ~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~ 187 (594)
T 2p1m_B 108 EEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLV 187 (594)
T ss_dssp CEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCC
T ss_pred CeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCc
Confidence 77777777766432 232 4677777777776 454433334444556666666666666654433332 445666
Q ss_pred EEEccCcc--ccccccccCcccceecccCcccccccccccccCCCccCEEEcCCCcccccCcccccCCCCCcEEEccCc-
Q 001384 202 YLDLSSNN--FRGNIWNGLAQLVEFSVSENVLSGVVSSSVFKENCSLEIFDLSENEFIGDFPGEVSNCRNLVVLNLFGN- 278 (1088)
Q Consensus 202 ~L~Ls~N~--l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N- 278 (1088)
+|++++|. ++... .......+++|++|+|++|...+.+|..+.++++|++|+++.+
T Consensus 188 ~L~l~~~~~~~~~~~---------------------l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 246 (594)
T 2p1m_B 188 SLNISCLASEVSFSA---------------------LERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYT 246 (594)
T ss_dssp EEECTTCCSCCCHHH---------------------HHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCC
T ss_pred EEEecccCCcCCHHH---------------------HHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEccccccc
Confidence 66666554 22111 1111223456666666666222235566666667777764433
Q ss_pred ------cccCCCccccCCCCCCCEE-eCCCCcCCccCcccccCCCCCcEEEcCCCcCCCchh-HhhhcccccceeecCcC
Q 001384 279 ------NFSGPIPAEIGSISGLEAL-FLGKNNFLSVIPESLLNLSKLEVLDLSSNNFGGEVQ-KIFGRFTQVKILALHSN 350 (1088)
Q Consensus 279 ------~l~~~~p~~~~~l~~L~~L-~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~n 350 (1088)
.+.+ ++..+.++++|+.| .+.+.. ...++..+..+++|++|+|++|.+++... ..+..++
T Consensus 247 ~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~-~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~---------- 314 (594)
T 2p1m_B 247 AEVRPDVYSG-LSVALSGCKELRCLSGFWDAV-PAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCP---------- 314 (594)
T ss_dssp CCCCHHHHHH-HHHHHHTCTTCCEEECCBTCC-GGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCT----------
T ss_pred CccchhhHHH-HHHHHhcCCCcccccCCcccc-hhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCC----------
Confidence 3332 33455666666666 333222 12234444455666777776666553322 2233344
Q ss_pred cccCCCCCccccCCCCcCEEEccCCccCCC-CCccccCCcCcceeec---------cccccCCcCCcccC-CCCCCcEEE
Q 001384 351 SYIDGMNSSGILKLPNISRLDLSHNNFTGP-LPVEISQMRSLKFLIL---------AHNRFNGSIPAVYG-NMPNLQTLD 419 (1088)
Q Consensus 351 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~L---------~~N~l~~~~p~~~~-~l~~L~~L~ 419 (1088)
+|+.|++++| +++. ++.....+++|+.|++ +.+.+++.....+. .+++|+.|+
T Consensus 315 ---------------~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~ 378 (594)
T 2p1m_B 315 ---------------KLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVL 378 (594)
T ss_dssp ---------------TCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEE
T ss_pred ---------------CcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHH
Confidence 4444444444 2211 1111123444555544 22333322222222 356666666
Q ss_pred ccCCcCCCCCCcccc-CCCCCcEEEcc--c----cccccC-----CCccccCCCCCCeEEccCCcCc
Q 001384 420 LSFNELTGPIPPSIG-NLTSLLWLMLA--N----NSLSGE-----IPGEIGNCTSLLWLNLSNNKLS 474 (1088)
Q Consensus 420 L~~N~l~~~~p~~~~-~l~~L~~L~L~--~----N~l~~~-----~p~~l~~l~~L~~L~L~~N~l~ 474 (1088)
++.|++++..+..+. .+++|++|+|+ + |.+++. ++..+..+++|+.|+|++ .++
T Consensus 379 ~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~ 444 (594)
T 2p1m_B 379 YFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLT 444 (594)
T ss_dssp EEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCC
T ss_pred HhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-ccc
Confidence 666666654444443 36666777666 3 444421 122255667777777765 444
No 322
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=2.2e-28 Score=300.26 Aligned_cols=352 Identities=19% Similarity=0.204 Sum_probs=186.4
Q ss_pred cCCccCCeeeCCCCCCCCCcCccCC-CCCCCcEEECccc-cccC--ccc-CCCCCCCceeecccccccccccCch---hh
Q 001384 100 SALTQLSYLDLSRNTFSGSIPDDLS-SCRSLKYLNLSHN-ILSG--DLN-LSGLRSLEILDLSVNRIHGEISFSF---PA 171 (1088)
Q Consensus 100 ~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~n-~l~~--~~~-l~~l~~L~~L~Ls~N~l~~~~~~~~---~~ 171 (1088)
..+++|++|+|++|.+++..+..+. .+++|++|+|++| .+++ ... +.++++|++|+|++|.+++..+..+ ..
T Consensus 102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD 181 (594)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence 4678999999999999987777775 6999999999999 5554 223 3479999999999999987665444 33
Q ss_pred hcccceEEeccCcc--CCCC-CCccccCCCCCcEEEccCc-cccc--cccccCcccceecccCcccccccccccccCCCc
Q 001384 172 ICEKLVVANLSLNN--LTGR-IDTCFDGCLNLRYLDLSSN-NFRG--NIWNGLAQLVEFSVSENVLSGVVSSSVFKENCS 245 (1088)
Q Consensus 172 ~~~~L~~L~L~~n~--l~~~-~~~~l~~l~~L~~L~Ls~N-~l~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~ 245 (1088)
.+++|++|++++|. ++.. +...+..+++|++|++++| .+++ .....+++|++|.++.+..
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~-------------- 247 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTA-------------- 247 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCC--------------
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccC--------------
Confidence 56799999999997 3211 1222355799999999988 3333 1223345555555332210
Q ss_pred cCEEEcCCCcccccCcccccCCCCCcEE-EccCccccCCCccccCCCCCCCEEeCCCCcCCccC-cccccCCCCCcEEEc
Q 001384 246 LEIFDLSENEFIGDFPGEVSNCRNLVVL-NLFGNNFSGPIPAEIGSISGLEALFLGKNNFLSVI-PESLLNLSKLEVLDL 323 (1088)
Q Consensus 246 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L-~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~L 323 (1088)
+++.|.+.+ ++..+.++++|+.| .+.+... +.++..+..+++|++|+|++|.++... +..+.++++|++|++
T Consensus 248 ----~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l 321 (594)
T 2p1m_B 248 ----EVRPDVYSG-LSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWV 321 (594)
T ss_dssp ----CCCHHHHHH-HHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEE
T ss_pred ----ccchhhHHH-HHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeC
Confidence 011222222 23345555555555 3332222 133333344556666666666544322 122345566666666
Q ss_pred CCCcCCCc-hhHhhhcccccceeecCcC--------cccCCCCCccc-cCCCCcCEEEccCCccCCCCCcccc-CCcCcc
Q 001384 324 SSNNFGGE-VQKIFGRFTQVKILALHSN--------SYIDGMNSSGI-LKLPNISRLDLSHNNFTGPLPVEIS-QMRSLK 392 (1088)
Q Consensus 324 ~~N~l~~~-~~~~~~~l~~L~~L~L~~n--------~~~~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~ 392 (1088)
++| +... .+.....+++|+.|++..+ ..+.......+ ..+++|++|+++.|.+++..+..+. .+++|+
T Consensus 322 ~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~ 400 (594)
T 2p1m_B 322 LDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMT 400 (594)
T ss_dssp EGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCC
T ss_pred cCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcc
Confidence 655 3221 2222233555555555221 11110000111 1245555555555555543333333 345555
Q ss_pred eeecc--c----cccCCc-----CCcccCCCCCCcEEEccCCcCCCCCCccccC-CCCCcEEEccccccccCCCccc-cC
Q 001384 393 FLILA--H----NRFNGS-----IPAVYGNMPNLQTLDLSFNELTGPIPPSIGN-LTSLLWLMLANNSLSGEIPGEI-GN 459 (1088)
Q Consensus 393 ~L~L~--~----N~l~~~-----~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~-l~~L~~L~L~~N~l~~~~p~~l-~~ 459 (1088)
.|+++ + |.+++. ++..+..+++|+.|+|++ .+++..+..++. +++|++|+|++|.+++..+..+ ..
T Consensus 401 ~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~ 479 (594)
T 2p1m_B 401 RFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSG 479 (594)
T ss_dssp EEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHH
T ss_pred eeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhc
Confidence 55555 2 333311 111133445555555544 444333333333 4555555555555544333333 34
Q ss_pred CCCCCeEEccCCcC
Q 001384 460 CTSLLWLNLSNNKL 473 (1088)
Q Consensus 460 l~~L~~L~L~~N~l 473 (1088)
+++|++|+|++|++
T Consensus 480 ~~~L~~L~L~~n~~ 493 (594)
T 2p1m_B 480 CDSLRKLEIRDCPF 493 (594)
T ss_dssp CTTCCEEEEESCSC
T ss_pred CCCcCEEECcCCCC
Confidence 55555555555554
No 323
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=6.5e-25 Score=260.66 Aligned_cols=248 Identities=23% Similarity=0.230 Sum_probs=182.7
Q ss_pred ccccccccccccccCCccCCeeeCCCCCCCCCcCccCCCCCCCcEEECccccccCcccCCCCCCCceeeccccccccccc
Q 001384 87 TDWNISGDIFNNFSALTQLSYLDLSRNTFSGSIPDDLSSCRSLKYLNLSHNILSGDLNLSGLRSLEILDLSVNRIHGEIS 166 (1088)
Q Consensus 87 ~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~ 166 (1088)
...++...+.......++|++|+|++|.+++..|..|+.+++|++|+|++|.+++..++.++++|++|+|++|.|++..+
T Consensus 18 ~~~~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~ 97 (487)
T 3oja_A 18 TDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLV 97 (487)
T ss_dssp CTTTHHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEE
T ss_pred chhhhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCC
Confidence 33344333333444556899999999999988888999999999999999999887778999999999999999886443
Q ss_pred CchhhhcccceEEeccCccCCCCCCccccCCCCCcEEEccCccccccc---cccCcccceecccCcccccccccccccCC
Q 001384 167 FSFPAICEKLVVANLSLNNLTGRIDTCFDGCLNLRYLDLSSNNFRGNI---WNGLAQLVEFSVSENVLSGVVSSSVFKEN 243 (1088)
Q Consensus 167 ~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L~~n~l~~~~~~~~~~~l 243 (1088)
. ++|++|+|++|++++..+.. +++|++|+|++|++++.. +..+++|+.|+|++|.+++..+...+..+
T Consensus 98 ~------~~L~~L~L~~N~l~~~~~~~---l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l 168 (487)
T 3oja_A 98 G------PSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS 168 (487)
T ss_dssp C------TTCCEEECCSSCCCCEEECC---CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGT
T ss_pred C------CCcCEEECcCCcCCCCCccc---cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhC
Confidence 2 67888888888888877653 567888888888887643 34567777777777777776655555567
Q ss_pred CccCEEEcCCCcccccCcccccCCCCCcEEEccCccccCCCccccCCCCCCCEEeCCCCcCCccCcccccCCCCCcEEEc
Q 001384 244 CSLEIFDLSENEFIGDFPGEVSNCRNLVVLNLFGNNFSGPIPAEIGSISGLEALFLGKNNFLSVIPESLLNLSKLEVLDL 323 (1088)
Q Consensus 244 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 323 (1088)
++|++|+|++|.+++. | .+..+++|++|+|++|.+++ +|+.+..+++|+.|+|++|.+++ +|..+..+++|+.|++
T Consensus 169 ~~L~~L~Ls~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l 244 (487)
T 3oja_A 169 DTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDL 244 (487)
T ss_dssp TTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEEC
T ss_pred CcccEEecCCCccccc-c-ccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEc
Confidence 7888888888887755 2 23357788888888888875 44457777888888888888776 5667777788888888
Q ss_pred CCCcCC-CchhHhhhcccccceeec
Q 001384 324 SSNNFG-GEVQKIFGRFTQVKILAL 347 (1088)
Q Consensus 324 ~~N~l~-~~~~~~~~~l~~L~~L~L 347 (1088)
++|.+. +.+|..+..++.|+.+++
T Consensus 245 ~~N~l~c~~~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 245 RGNGFHCGTLRDFFSKNQRVQTVAK 269 (487)
T ss_dssp TTCCBCHHHHHHHHTTCHHHHHHHH
T ss_pred CCCCCcCcchHHHHHhCCCCcEEec
Confidence 888777 555666665555544443
No 324
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=8.9e-24 Score=231.16 Aligned_cols=217 Identities=24% Similarity=0.313 Sum_probs=146.5
Q ss_pred CCCcccCCceeCCCCceeEEeccccccccccccccccCCccCCeeeCCCCCCCCCcCccCCCCCCCcEEECccccccCcc
Q 001384 64 SSPCEWPGIICSPDKARVNGLNLTDWNISGDIFNNFSALTQLSYLDLSRNTFSGSIPDDLSSCRSLKYLNLSHNILSGDL 143 (1088)
Q Consensus 64 ~~~C~W~gv~C~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~ 143 (1088)
.++|.|.|+.|+- ...++.+++++++++. +|..+. ++|++|+|++|++++..+..|+.+++|++|+|++|.++...
T Consensus 2 ~~~C~~~~~~C~c-~~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~ 77 (270)
T 2o6q_A 2 EALCKKDGGVCSC-NNNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP 77 (270)
T ss_dssp CCCBGGGTCSBEE-ETTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC
T ss_pred CccCCCCCCCCEe-CCCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC
Confidence 4799999999863 2345567888888885 454443 67888888888888776678888888888888888777543
Q ss_pred c--CCCCCCCceeecccccccccccCchhhhcccceEEeccCccCCCCCCccccCCCCCcEEEccCccccccccccCccc
Q 001384 144 N--LSGLRSLEILDLSVNRIHGEISFSFPAICEKLVVANLSLNNLTGRIDTCFDGCLNLRYLDLSSNNFRGNIWNGLAQL 221 (1088)
Q Consensus 144 ~--l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~L 221 (1088)
. +.++++|++|+|++|+++ +..+..|.++++|++|+|++|++++
T Consensus 78 ~~~~~~l~~L~~L~l~~n~l~-------------------------~~~~~~~~~l~~L~~L~l~~n~l~~--------- 123 (270)
T 2o6q_A 78 AGIFKELKNLETLWVTDNKLQ-------------------------ALPIGVFDQLVNLAELRLDRNQLKS--------- 123 (270)
T ss_dssp TTTTSSCTTCCEEECCSSCCC-------------------------CCCTTTTTTCSSCCEEECCSSCCCC---------
T ss_pred hhhhcCCCCCCEEECCCCcCC-------------------------cCCHhHcccccCCCEEECCCCccCe---------
Confidence 2 455666666666666554 3334445556666666666665542
Q ss_pred ceecccCcccccccccccccCCCccCEEEcCCCcccccCcccccCCCCCcEEEccCccccCCCccccCCCCCCCEEeCCC
Q 001384 222 VEFSVSENVLSGVVSSSVFKENCSLEIFDLSENEFIGDFPGEVSNCRNLVVLNLFGNNFSGPIPAEIGSISGLEALFLGK 301 (1088)
Q Consensus 222 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 301 (1088)
++...|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++
T Consensus 124 -------------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 190 (270)
T 2o6q_A 124 -------------LPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDN 190 (270)
T ss_dssp -------------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred -------------eCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCC
Confidence 2233344555666666666666655555567777777777777777765555677777777777777
Q ss_pred CcCCccCcccccCCCCCcEEEcCCCcCCCc
Q 001384 302 NNFLSVIPESLLNLSKLEVLDLSSNNFGGE 331 (1088)
Q Consensus 302 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 331 (1088)
|++++..+..+..+++|+.|+|++|.+...
T Consensus 191 N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 191 NQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred CcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 777766666677777777777777776543
No 325
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=5.2e-24 Score=234.00 Aligned_cols=208 Identities=22% Similarity=0.209 Sum_probs=140.3
Q ss_pred CCcEEEccCccccCCCccccCCCCCCCEEeCCCCcCCccCcccccCCCCCcEEEcCCCcCCCchhHhhhcccccceeecC
Q 001384 269 NLVVLNLFGNNFSGPIPAEIGSISGLEALFLGKNNFLSVIPESLLNLSKLEVLDLSSNNFGGEVQKIFGRFTQVKILALH 348 (1088)
Q Consensus 269 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 348 (1088)
+|++|++++|++++..+..|..+++|++|+|++|++.+..+..|.++++|++|+|++|.+++..+..|..+++|+.|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 34444444444443333344444444444444444444444444444444444444444444444444444444444444
Q ss_pred cCcccCCCCCccccCCCCcCEEEccCCccCCC-CCccccCCcCcceeeccccccCCcCCcccCCCCCCc----EEEccCC
Q 001384 349 SNSYIDGMNSSGILKLPNISRLDLSHNNFTGP-LPVEISQMRSLKFLILAHNRFNGSIPAVYGNMPNLQ----TLDLSFN 423 (1088)
Q Consensus 349 ~n~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~----~L~L~~N 423 (1088)
+|.+. ......+..+++|++|++++|.+++. +|..+..+++|++|++++|++++..+..+..+++|+ .|++++|
T Consensus 109 ~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 109 ETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCcc-ccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 44432 22233466788899999999999863 688999999999999999999977777777777776 8999999
Q ss_pred cCCCCCCccccCCCCCcEEEccccccccCCCccccCCCCCCeEEccCCcCccCCC
Q 001384 424 ELTGPIPPSIGNLTSLLWLMLANNSLSGEIPGEIGNCTSLLWLNLSNNKLSGNIP 478 (1088)
Q Consensus 424 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip 478 (1088)
++++ +|.......+|++|+|++|++++..+..+.++++|++|+|++|++++..|
T Consensus 188 ~l~~-~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 188 PMNF-IQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp CCCE-ECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred cccc-cCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 9995 44444455689999999999997666668999999999999999998765
No 326
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=3.4e-24 Score=234.73 Aligned_cols=228 Identities=21% Similarity=0.282 Sum_probs=173.5
Q ss_pred cccceecccCcccccccccccccCCCccCEEEcCCCcccccCcccccCCCCCcEEEccCccccCCCccccCCCCCCCEEe
Q 001384 219 AQLVEFSVSENVLSGVVSSSVFKENCSLEIFDLSENEFIGDFPGEVSNCRNLVVLNLFGNNFSGPIPAEIGSISGLEALF 298 (1088)
Q Consensus 219 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 298 (1088)
.++..+++.++.+.+... ...+++|+.|++++|.++. + ..+..+++|++|++++|.+++. +.+..+++|++|+
T Consensus 19 ~~l~~l~l~~~~~~~~~~---~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~ 91 (272)
T 3rfs_A 19 AETIKANLKKKSVTDAVT---QNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLI 91 (272)
T ss_dssp HHHHHHHHTCSCTTSEEC---HHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEE
T ss_pred HHHHHHHhcCcccccccc---cccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEE
Confidence 344455555555544322 3345677888888887763 2 3477788888888888888752 4677888888888
Q ss_pred CCCCcCCccCcccccCCCCCcEEEcCCCcCCCchhHhhhcccccceeecCcCcccCCCCCccccCCCCcCEEEccCCccC
Q 001384 299 LGKNNFLSVIPESLLNLSKLEVLDLSSNNFGGEVQKIFGRFTQVKILALHSNSYIDGMNSSGILKLPNISRLDLSHNNFT 378 (1088)
Q Consensus 299 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 378 (1088)
|++|.+++..+..+.++++|++|+|++|++++.++..| ..+++|++|+|++|+++
T Consensus 92 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-------------------------~~l~~L~~L~L~~n~l~ 146 (272)
T 3rfs_A 92 LTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVF-------------------------DKLTNLTYLNLAHNQLQ 146 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT-------------------------TTCTTCCEEECCSSCCC
T ss_pred CCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHh-------------------------ccCCCCCEEECCCCccC
Confidence 88888887777777788888888888888776555443 45677888888888888
Q ss_pred CCCCccccCCcCcceeeccccccCCcCCcccCCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEccccccccCCCcccc
Q 001384 379 GPLPVEISQMRSLKFLILAHNRFNGSIPAVYGNMPNLQTLDLSFNELTGPIPPSIGNLTSLLWLMLANNSLSGEIPGEIG 458 (1088)
Q Consensus 379 ~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~ 458 (1088)
+..+..+..+++|+.|++++|++++..+..++.+++|++|++++|++++..|..++.+++|++|+|++|.+.+.
T Consensus 147 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~------ 220 (272)
T 3rfs_A 147 SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT------ 220 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC------
T ss_pred ccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc------
Confidence 77677778888999999999999877777788899999999999999987777788899999999999988754
Q ss_pred CCCCCCeEEccCCcCccCCCchhhccC
Q 001384 459 NCTSLLWLNLSNNKLSGNIPPEVMTIG 485 (1088)
Q Consensus 459 ~l~~L~~L~L~~N~l~g~ip~~~~~~~ 485 (1088)
+++|++|+++.|.++|.+|..++.+.
T Consensus 221 -~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 221 -CPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp -TTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred -CcHHHHHHHHHHhCCCcccCcccccC
Confidence 55788899999999999998876553
No 327
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=9.3e-23 Score=223.05 Aligned_cols=206 Identities=22% Similarity=0.285 Sum_probs=168.2
Q ss_pred ccCEEEcCCCcccccCcccccCCCCCcEEEccCccccCCCccccCCCCCCCEEeCCCCcCCccCcccccCCCCCcEEEcC
Q 001384 245 SLEIFDLSENEFIGDFPGEVSNCRNLVVLNLFGNNFSGPIPAEIGSISGLEALFLGKNNFLSVIPESLLNLSKLEVLDLS 324 (1088)
Q Consensus 245 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~ 324 (1088)
+.+.+++++++++ .+|..+. ++|++|+|++|++++..+..|..+++|++|+|++|.++...+..|.++++|++|+|+
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 4677888888877 4665554 578888888888886666678888888888888888877666667778888888888
Q ss_pred CCcCCCchhHhhhcccccceeecCcCcccCCCCCccccCCCCcCEEEccCCccCCCCCccccCCcCcceeeccccccCCc
Q 001384 325 SNNFGGEVQKIFGRFTQVKILALHSNSYIDGMNSSGILKLPNISRLDLSHNNFTGPLPVEISQMRSLKFLILAHNRFNGS 404 (1088)
Q Consensus 325 ~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 404 (1088)
+|.+++.++.. +..+++|++|+|++|++++..|..|..+++|++|+|++|++++.
T Consensus 94 ~n~l~~~~~~~-------------------------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 148 (270)
T 2o6q_A 94 DNKLQALPIGV-------------------------FDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSL 148 (270)
T ss_dssp SSCCCCCCTTT-------------------------TTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCcCCcCCHhH-------------------------cccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCcc
Confidence 88877654443 34567888888888889877777889999999999999999976
Q ss_pred CCcccCCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEccccccccCCCccccCCCCCCeEEccCCcCccCCC
Q 001384 405 IPAVYGNMPNLQTLDLSFNELTGPIPPSIGNLTSLLWLMLANNSLSGEIPGEIGNCTSLLWLNLSNNKLSGNIP 478 (1088)
Q Consensus 405 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip 478 (1088)
.+..|..+++|++|+|++|++++..+..+.++++|++|+|++|++++..+..+..+++|+.|+|++|++.+.-+
T Consensus 149 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 149 PKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred CHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 66678999999999999999997666678999999999999999997666678999999999999999986543
No 328
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=1.1e-23 Score=230.69 Aligned_cols=228 Identities=21% Similarity=0.248 Sum_probs=184.7
Q ss_pred cceEEeccCccCCCCCCccccCCCCCcEEEccCccccccccccCcccceecccCcccccccccccccCCCccCEEEcCCC
Q 001384 175 KLVVANLSLNNLTGRIDTCFDGCLNLRYLDLSSNNFRGNIWNGLAQLVEFSVSENVLSGVVSSSVFKENCSLEIFDLSEN 254 (1088)
Q Consensus 175 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n 254 (1088)
++..+++..+.+..... +..+++|+.|++++|.++. . ..+..+++|++|+|++|
T Consensus 20 ~l~~l~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~---------------------~---~~l~~l~~L~~L~l~~n 73 (272)
T 3rfs_A 20 ETIKANLKKKSVTDAVT--QNELNSIDQIIANNSDIKS---------------------V---QGIQYLPNVRYLALGGN 73 (272)
T ss_dssp HHHHHHHTCSCTTSEEC--HHHHTTCCEEECTTSCCCC---------------------C---TTGGGCTTCCEEECTTS
T ss_pred HHHHHHhcCcccccccc--cccccceeeeeeCCCCccc---------------------c---cccccCCCCcEEECCCC
Confidence 44455566666555432 4556667777776666542 1 23556778999999999
Q ss_pred cccccCcccccCCCCCcEEEccCccccCCCccccCCCCCCCEEeCCCCcCCccCcccccCCCCCcEEEcCCCcCCCchhH
Q 001384 255 EFIGDFPGEVSNCRNLVVLNLFGNNFSGPIPAEIGSISGLEALFLGKNNFLSVIPESLLNLSKLEVLDLSSNNFGGEVQK 334 (1088)
Q Consensus 255 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 334 (1088)
.+++ + ..+.++++|++|+|++|.+++..+..++.+++|++|+|++|++++..+..+..+++|++|+|++|.+++.++.
T Consensus 74 ~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 151 (272)
T 3rfs_A 74 KLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKG 151 (272)
T ss_dssp CCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHH
Confidence 9875 3 4788999999999999999987777789999999999999999988888899999999999999999876654
Q ss_pred hhhcccccceeecCcCcccCCCCCccccCCCCcCEEEccCCccCCCCCccccCCcCcceeeccccccCCcCCcccCCCCC
Q 001384 335 IFGRFTQVKILALHSNSYIDGMNSSGILKLPNISRLDLSHNNFTGPLPVEISQMRSLKFLILAHNRFNGSIPAVYGNMPN 414 (1088)
Q Consensus 335 ~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 414 (1088)
.| ..+++|+.|++++|++++..+..+..+++|++|++++|++++..|..+..+++
T Consensus 152 ~~-------------------------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 206 (272)
T 3rfs_A 152 VF-------------------------DKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS 206 (272)
T ss_dssp TT-------------------------TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred Hh-------------------------ccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcC
Confidence 44 35678888888899998777777889999999999999999888888899999
Q ss_pred CcEEEccCCcCCCCCCccccCCCCCcEEEccccccccCCCccccCCCC
Q 001384 415 LQTLDLSFNELTGPIPPSIGNLTSLLWLMLANNSLSGEIPGEIGNCTS 462 (1088)
Q Consensus 415 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 462 (1088)
|+.|++++|.+.+. +++|+.|++..|+++|.+|..++.++.
T Consensus 207 L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 207 LQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp CCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred CCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccCC
Confidence 99999999998854 457899999999999999999887765
No 329
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.89 E-value=4.5e-23 Score=226.50 Aligned_cols=207 Identities=23% Similarity=0.172 Sum_probs=157.6
Q ss_pred ccCEEEcCCCcccccCcccccCCCCCcEEEccCccccCCCccccCCCCCCCEEeCCCCcCCccCcccccCCCCCcEEEcC
Q 001384 245 SLEIFDLSENEFIGDFPGEVSNCRNLVVLNLFGNNFSGPIPAEIGSISGLEALFLGKNNFLSVIPESLLNLSKLEVLDLS 324 (1088)
Q Consensus 245 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~ 324 (1088)
+|++|+|++|++++..+..|.++++|++|+|++|++++..+..|..+++|++|+|++|.+++..+..|.++++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 56777777777766666667777777777777777775555567777777777777777777666677777777777777
Q ss_pred CCcCCCchhHhhhcccccceeecCcCcccCCCCCccccCCCCcCEEEccCCccCCCCCccccCCcCcc----eeeccccc
Q 001384 325 SNNFGGEVQKIFGRFTQVKILALHSNSYIDGMNSSGILKLPNISRLDLSHNNFTGPLPVEISQMRSLK----FLILAHNR 400 (1088)
Q Consensus 325 ~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~----~L~L~~N~ 400 (1088)
+|.+.+..+..++.+++|+.|++++|.+.....+..+..+++|++|+|++|++++..+..+..+++|+ .|++++|+
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~ 188 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSC
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCc
Confidence 77777666666777777777777777654433456777889999999999999977777888777777 89999999
Q ss_pred cCCcCCcccCCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEccccccccC
Q 001384 401 FNGSIPAVYGNMPNLQTLDLSFNELTGPIPPSIGNLTSLLWLMLANNSLSGE 452 (1088)
Q Consensus 401 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 452 (1088)
+++..+..+ ...+|+.|++++|++++..+..+.++++|++|+|++|.+++.
T Consensus 189 l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 189 MNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp CCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred ccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence 996555544 455899999999999966566678999999999999999854
No 330
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*
Probab=99.89 E-value=2.3e-24 Score=257.86 Aligned_cols=185 Identities=21% Similarity=0.288 Sum_probs=145.5
Q ss_pred CccceecccCceEEEEEEeCCCcEEEEEEccccCcc--------chHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCe
Q 001384 808 SEDRIIGKGGFGTVYRGVLPDGREVAVKKLQREGLE--------GEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSE 879 (1088)
Q Consensus 808 ~~~~~LG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~--------~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~ 879 (1088)
...+.||+|+||+||+|.. .++.+|+|+....... ..+.+.+|++++++ ++||||+++..++...+.
T Consensus 339 ~~~~~LG~G~fg~Vy~~~~-~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~----l~h~nIv~~~~~~~~~~~ 413 (540)
T 3en9_A 339 IPEHLIGKGAEADIKRDSY-LDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLAL----VKDFGIPAPYIFDVDLDN 413 (540)
T ss_dssp ---------CCEEEEEEEC-SSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHH----GGGGTCCCCCEEEEETTT
T ss_pred CCCCEEeeCCCEEEEEEEE-CCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHh----cCCCCcCceEEEEEeCCc
Confidence 3357899999999999955 5788999986543221 12457899999997 679999966666667777
Q ss_pred EEEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccceeec
Q 001384 880 KILVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARVVS 959 (1088)
Q Consensus 880 ~~lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~~ 959 (1088)
.|+||||+++++|.++++. +..++.|++.||+|||++ +|+||||||+||+++. .+||+|||+++...
T Consensus 414 ~~lVmE~~~ggsL~~~l~~--------~~~i~~qi~~aL~~LH~~---gIiHrDiKp~NILl~~--~~kL~DFGla~~~~ 480 (540)
T 3en9_A 414 KRIMMSYINGKLAKDVIED--------NLDIAYKIGEIVGKLHKN---DVIHNDLTTSNFIFDK--DLYIIDFGLGKISN 480 (540)
T ss_dssp TEEEEECCCSEEHHHHSTT--------CTHHHHHHHHHHHHHHHT---TEECTTCCTTSEEESS--SEEECCCTTCEECC
T ss_pred cEEEEECCCCCCHHHHHHH--------HHHHHHHHHHHHHHHHHC---cCccCCCCHHHEEECC--eEEEEECccCEECC
Confidence 8999999999999999976 568999999999999999 9999999999999998 99999999999875
Q ss_pred CCCCcc------cccccccccccCccccCC--CCCCcchhHHHHHHHHHHHHhCCcCCC
Q 001384 960 AGDSHV------STTIAGTVGYVAPEYGQT--WQATTKGDVYSFGVLAMELATGRRALE 1010 (1088)
Q Consensus 960 ~~~~~~------~~~~~gt~~y~aPE~~~~--~~~~~~~DvwslG~~l~elltg~~p~~ 1010 (1088)
...... .....||+.|+|||++.. ..|+...|+|+..+-..+-+.++.+|.
T Consensus 481 ~~~~~~~~~~~~~~~~~GT~~y~APEv~~~~~~~Y~~~~d~ws~vl~~l~~v~~r~rY~ 539 (540)
T 3en9_A 481 LDEDKAVDLIVFKKAVLSTHHEKFDEIWERFLEGYKSVYDRWEIILELMKDVERRARYV 539 (540)
T ss_dssp CHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTCSCCC
T ss_pred CccccccchhhhhhhhcCCCCcCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccccC
Confidence 432211 235689999999999876 567888999999998888888777663
No 331
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=1.9e-22 Score=222.49 Aligned_cols=206 Identities=23% Similarity=0.217 Sum_probs=164.5
Q ss_pred cccCCCccCEEEcCCCcccccCcccccCCCCCcEEEccCccccCCCccccCCCCCCCEEeCCCCcCCccCcccccCCCCC
Q 001384 239 VFKENCSLEIFDLSENEFIGDFPGEVSNCRNLVVLNLFGNNFSGPIPAEIGSISGLEALFLGKNNFLSVIPESLLNLSKL 318 (1088)
Q Consensus 239 ~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 318 (1088)
.+..+++++.+++++|+++ .+|..+. ++++.|+|++|++++..+..|..+++|+.|+|++|.+++..+ ...+++|
T Consensus 5 ~~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L 79 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVL 79 (290)
T ss_dssp EEECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTC
T ss_pred cccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcC
Confidence 3556677788888887776 4555543 577778888887776666777777777777777777776432 2667777
Q ss_pred cEEEcCCCcCCCchhHhhhcccccceeecCcCcccCCCCCccccCCCCcCEEEccCCccCCCCCccccCCcCcceeeccc
Q 001384 319 EVLDLSSNNFGGEVQKIFGRFTQVKILALHSNSYIDGMNSSGILKLPNISRLDLSHNNFTGPLPVEISQMRSLKFLILAH 398 (1088)
Q Consensus 319 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~ 398 (1088)
++|+|++|+++.. +..+..+++|++|+|++|++++..|..|..+++|++|+|++
T Consensus 80 ~~L~Ls~N~l~~l--------------------------~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~ 133 (290)
T 1p9a_G 80 GTLDLSHNQLQSL--------------------------PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133 (290)
T ss_dssp CEEECCSSCCSSC--------------------------CCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTT
T ss_pred CEEECCCCcCCcC--------------------------chhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCC
Confidence 7777777776532 22345678899999999999977778899999999999999
Q ss_pred cccCCcCCcccCCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEccccccccCCCccccCCCCCCeEEccCCcCccC
Q 001384 399 NRFNGSIPAVYGNMPNLQTLDLSFNELTGPIPPSIGNLTSLLWLMLANNSLSGEIPGEIGNCTSLLWLNLSNNKLSGN 476 (1088)
Q Consensus 399 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ 476 (1088)
|++++..+..|..+++|+.|+|++|+|++..+..+.++++|++|+|++|+++ .+|..+..+++|+.|+|++|++.+.
T Consensus 134 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred CCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCc
Confidence 9999777778899999999999999999655556788999999999999999 7899999999999999999999753
No 332
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=1.5e-22 Score=223.39 Aligned_cols=202 Identities=23% Similarity=0.230 Sum_probs=133.6
Q ss_pred cCCCCcCEEEccCCccCCCCCccccCCcCcceeeccccccCCcCCcccCCCCCCcEEEccCCcCCCCCCccccCCCCCcE
Q 001384 362 LKLPNISRLDLSHNNFTGPLPVEISQMRSLKFLILAHNRFNGSIPAVYGNMPNLQTLDLSFNELTGPIPPSIGNLTSLLW 441 (1088)
Q Consensus 362 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 441 (1088)
.++++++.+++++|.++ .+|..+. ++++.|+|++|++++..|..|..+++|++|+|++|++++ ++.. +.+++|++
T Consensus 7 ~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~-~~l~~L~~ 81 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVD-GTLPVLGT 81 (290)
T ss_dssp ECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECC-SCCTTCCE
T ss_pred cccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccCC-CCCCcCCE
Confidence 45566666666666666 4554443 456666666666665555666666666666666666663 3322 55566666
Q ss_pred EEccccccccCCCccccCCCCCCeEEccCCcCccCCCchhhccCCCCCccccccccCCcccccCCccccccccccCCCCC
Q 001384 442 LMLANNSLSGEIPGEIGNCTSLLWLNLSNNKLSGNIPPEVMTIGRNARPTFEANQRNGERTIAGSSECLSMKRWIPADYP 521 (1088)
Q Consensus 442 L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (1088)
|+|++|+++ .+|..+..+++|++|+|++|+++
T Consensus 82 L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~----------------------------------------------- 113 (290)
T 1p9a_G 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT----------------------------------------------- 113 (290)
T ss_dssp EECCSSCCS-SCCCCTTTCTTCCEEECCSSCCC-----------------------------------------------
T ss_pred EECCCCcCC-cCchhhccCCCCCEEECCCCcCc-----------------------------------------------
Confidence 666666665 45555556666666666666555
Q ss_pred CCcceeeehhccccchhhhhcccCCcccccccCCCcccceeeeceEEccCCccccccCcccccCCCccEEeccccccccC
Q 001384 522 PFSFVYTILTRKSCRSLWDRLLKGTGIFPVCLPGLASRTFQITGYLQLSGNQLSGELSPDIGKLQNFSMVHLGFNQFDGK 601 (1088)
Q Consensus 522 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~l~~L~l~~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~ 601 (1088)
+..|..++.+++|+.|+|++|++++.
T Consensus 114 ------------------------------------------------------~l~~~~~~~l~~L~~L~L~~N~l~~~ 139 (290)
T 1p9a_G 114 ------------------------------------------------------SLPLGALRGLGELQELYLKGNELKTL 139 (290)
T ss_dssp ------------------------------------------------------CCCSSTTTTCTTCCEEECTTSCCCCC
T ss_pred ------------------------------------------------------ccCHHHHcCCCCCCEEECCCCCCCcc
Confidence 33334455566677777777777755
Q ss_pred CCCcccCc-cceEEEccCCcccccCCccccCCccCcEEEccccccCCcCCcccccccccceeeccCCCCcc
Q 001384 602 LPSQFDQL-PLIVLNLTRNNFSGEIPSEFGNIKCLQNLDLSYNNFSGPFPASFNNLTELSKLNISYNPLVS 671 (1088)
Q Consensus 602 ~p~~~~~l-~l~~l~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~l~~L~~l~l~~N~l~~ 671 (1088)
.|..|..+ .|+.|+|++|++++..+..|.++++|+.|+|++|+|+ .+|..+..+.+|+.|+|++|+|.+
T Consensus 140 ~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 140 PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred ChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 55556655 5777777777777444455788899999999999998 788888888899999999999854
No 333
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=4.7e-23 Score=230.32 Aligned_cols=229 Identities=20% Similarity=0.190 Sum_probs=165.3
Q ss_pred ccceecccCcccccccccc--cccCCCccCEEEcCCCcccccCcccc--cCCCCCcEEEccCccccCCCc----cccCCC
Q 001384 220 QLVEFSVSENVLSGVVSSS--VFKENCSLEIFDLSENEFIGDFPGEV--SNCRNLVVLNLFGNNFSGPIP----AEIGSI 291 (1088)
Q Consensus 220 ~L~~L~L~~n~l~~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~p~~l--~~l~~L~~L~L~~N~l~~~~p----~~~~~l 291 (1088)
.++.+.+.++.++...... .+..+++|++|+|++|.+++..|..+ .++++|++|+|++|.+++..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 3455666666554321111 11223457778888777777777776 777777888888777776444 344567
Q ss_pred CCCCEEeCCCCcCCccCcccccCCCCCcEEEcCCCcCCCchhHhhhcccccceeecCcCcccCCCCCccccCCCCcCEEE
Q 001384 292 SGLEALFLGKNNFLSVIPESLLNLSKLEVLDLSSNNFGGEVQKIFGRFTQVKILALHSNSYIDGMNSSGILKLPNISRLD 371 (1088)
Q Consensus 292 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~ 371 (1088)
++|++|+|++|++.+..|..+..+++|++|+|++|++.+...-. ....+..+++|++|+
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~---------------------~~~~~~~l~~L~~L~ 203 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLM---------------------AALCPHKFPAIQNLA 203 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHH---------------------TTSCTTSSCCCCSCB
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhh---------------------HHHhhhcCCCCCEEE
Confidence 77777777777777777777777777777777777765431100 011234677888899
Q ss_pred ccCCccCCCCCc----cccCCcCcceeeccccccCCcCCcccCCC---CCCcEEEccCCcCCCCCCccccCCCCCcEEEc
Q 001384 372 LSHNNFTGPLPV----EISQMRSLKFLILAHNRFNGSIPAVYGNM---PNLQTLDLSFNELTGPIPPSIGNLTSLLWLML 444 (1088)
Q Consensus 372 Ls~N~l~~~~p~----~l~~l~~L~~L~L~~N~l~~~~p~~~~~l---~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 444 (1088)
|++|+++ .+|. .+..+++|++|+|++|++++..|..+..+ ++|++|+|++|+|+ .+|..+. ++|++|+|
T Consensus 204 Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~L 279 (310)
T 4glp_A 204 LRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDL 279 (310)
T ss_dssp CCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEEC
T ss_pred CCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEEC
Confidence 9999887 3444 25678999999999999998778777776 69999999999999 7888775 79999999
Q ss_pred cccccccCCCccccCCCCCCeEEccCCcCcc
Q 001384 445 ANNSLSGEIPGEIGNCTSLLWLNLSNNKLSG 475 (1088)
Q Consensus 445 ~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g 475 (1088)
++|++++ +|. +..+++|+.|+|++|+++.
T Consensus 280 s~N~l~~-~~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 280 SSNRLNR-APQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CSCCCCS-CCC-TTSCCCCSCEECSSTTTSC
T ss_pred CCCcCCC-Cch-hhhCCCccEEECcCCCCCC
Confidence 9999995 454 6888999999999999973
No 334
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=6e-24 Score=243.08 Aligned_cols=224 Identities=18% Similarity=0.143 Sum_probs=102.4
Q ss_pred EcCCCcccccCcccccCCCCCcEEEccCccccCCCc----cccCCCC-CCCEEeCCCCcCCccCcccccCC-----CCCc
Q 001384 250 DLSENEFIGDFPGEVSNCRNLVVLNLFGNNFSGPIP----AEIGSIS-GLEALFLGKNNFLSVIPESLLNL-----SKLE 319 (1088)
Q Consensus 250 ~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p----~~~~~l~-~L~~L~L~~N~l~~~~p~~l~~l-----~~L~ 319 (1088)
+++.|++++.+|..+...++|++|+|++|.+++..+ ..+..++ +|++|+|++|.+++..+..+..+ ++|+
T Consensus 4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~ 83 (362)
T 3goz_A 4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83 (362)
T ss_dssp ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred ccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCcc
Confidence 444444444444444444445555555555543333 3444444 45555555555544444444432 4555
Q ss_pred EEEcCCCcCCCchhHhhhcc-----cccceeecCcCcccCCCCCc----cccC-CCCcCEEEccCCccCCCCCcc----c
Q 001384 320 VLDLSSNNFGGEVQKIFGRF-----TQVKILALHSNSYIDGMNSS----GILK-LPNISRLDLSHNNFTGPLPVE----I 385 (1088)
Q Consensus 320 ~L~L~~N~l~~~~~~~~~~l-----~~L~~L~L~~n~~~~~~~~~----~~~~-l~~L~~L~Ls~N~l~~~~p~~----l 385 (1088)
+|+|++|.+++..+..+... ++|+.|++++|.+... ... .+.. .++|++|+|++|.+++..+.. +
T Consensus 84 ~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~-~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 84 SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSK-SSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp EEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS-CHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred EEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcH-HHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 55555555544444333221 2333333333332111 110 1112 135566666666655432222 2
Q ss_pred cCCc-CcceeeccccccCCcCCccc----CCC-CCCcEEEccCCcCCCC----CCccccC-CCCCcEEEccccccccCCC
Q 001384 386 SQMR-SLKFLILAHNRFNGSIPAVY----GNM-PNLQTLDLSFNELTGP----IPPSIGN-LTSLLWLMLANNSLSGEIP 454 (1088)
Q Consensus 386 ~~l~-~L~~L~L~~N~l~~~~p~~~----~~l-~~L~~L~L~~N~l~~~----~p~~~~~-l~~L~~L~L~~N~l~~~~p 454 (1088)
..++ +|++|+|++|++++..+..+ ..+ ++|++|+|++|++++. ++..+.. .++|++|+|++|.+++..+
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 242 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence 3333 56666666666654444322 223 3566666666665532 3333333 2356666666666654322
Q ss_pred ----ccccCCCCCCeEEccCCcCc
Q 001384 455 ----GEIGNCTSLLWLNLSNNKLS 474 (1088)
Q Consensus 455 ----~~l~~l~~L~~L~L~~N~l~ 474 (1088)
..+..+++|++|+|++|++.
T Consensus 243 ~~l~~~~~~l~~L~~L~L~~n~l~ 266 (362)
T 3goz_A 243 ENLKLLKDSLKHLQTVYLDYDIVK 266 (362)
T ss_dssp HHHHHTTTTTTTCSEEEEEHHHHT
T ss_pred HHHHHHHhcCCCccEEEeccCCcc
Confidence 22345556666666666554
No 335
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=6.9e-24 Score=242.63 Aligned_cols=265 Identities=21% Similarity=0.238 Sum_probs=169.8
Q ss_pred EeccCccCCCCCCccccCCCCCcEEEccCccccccccccCcccceecccCcccccccccccccCCC-ccCEEEcCCCccc
Q 001384 179 ANLSLNNLTGRIDTCFDGCLNLRYLDLSSNNFRGNIWNGLAQLVEFSVSENVLSGVVSSSVFKENC-SLEIFDLSENEFI 257 (1088)
Q Consensus 179 L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~-~L~~L~Ls~n~l~ 257 (1088)
+.|++|++++.+|..+...++|++|+|++|++++..+..+ ...|..++ +|++|+|++|+++
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l------------------~~~l~~~~~~L~~L~Ls~N~l~ 64 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVEL------------------IQAFANTPASVTSLNLSGNSLG 64 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHH------------------HHHHHTCCTTCCEEECCSSCGG
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHH------------------HHHHHhCCCceeEEECcCCCCC
Confidence 4566666666666666666667777777777664322100 02334444 5666666666666
Q ss_pred ccCcccccCC-----CCCcEEEccCccccCCCccccC----CC-CCCCEEeCCCCcCCccCccccc----C-CCCCcEEE
Q 001384 258 GDFPGEVSNC-----RNLVVLNLFGNNFSGPIPAEIG----SI-SGLEALFLGKNNFLSVIPESLL----N-LSKLEVLD 322 (1088)
Q Consensus 258 ~~~p~~l~~l-----~~L~~L~L~~N~l~~~~p~~~~----~l-~~L~~L~L~~N~l~~~~p~~l~----~-l~~L~~L~ 322 (1088)
+..+..+..+ ++|++|+|++|++++..+..+. .+ ++|++|+|++|.+++..+..+. . .++|++|+
T Consensus 65 ~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~ 144 (362)
T 3goz_A 65 FKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLN 144 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEE
T ss_pred HHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEE
Confidence 6555555553 6777777777777655555333 33 6777777777777665554433 2 25777777
Q ss_pred cCCCcCCCchhHhhhcccccceeecCcCcccCCCCCccccCCC-CcCEEEccCCccCCCCCccccC----C-cCcceeec
Q 001384 323 LSSNNFGGEVQKIFGRFTQVKILALHSNSYIDGMNSSGILKLP-NISRLDLSHNNFTGPLPVEISQ----M-RSLKFLIL 396 (1088)
Q Consensus 323 L~~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~p~~l~~----l-~~L~~L~L 396 (1088)
|++|.+++.....+.. .+..++ +|++|+|++|++++..+..+.. . ++|+.|+|
T Consensus 145 Ls~N~l~~~~~~~l~~---------------------~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L 203 (362)
T 3goz_A 145 LRGNDLGIKSSDELIQ---------------------ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDL 203 (362)
T ss_dssp CTTSCGGGSCHHHHHH---------------------HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEEC
T ss_pred ccCCcCCHHHHHHHHH---------------------HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEEC
Confidence 7777776544433321 112333 7778888888887666554443 3 58888888
Q ss_pred cccccCCc----CCcccCC-CCCCcEEEccCCcCCCCCC----ccccCCCCCcEEEcccccccc-------CCCccccCC
Q 001384 397 AHNRFNGS----IPAVYGN-MPNLQTLDLSFNELTGPIP----PSIGNLTSLLWLMLANNSLSG-------EIPGEIGNC 460 (1088)
Q Consensus 397 ~~N~l~~~----~p~~~~~-l~~L~~L~L~~N~l~~~~p----~~~~~l~~L~~L~L~~N~l~~-------~~p~~l~~l 460 (1088)
++|++++. ++..+.. .++|++|+|++|++++..+ ..+..+++|++|+|++|.+.+ .++..+.++
T Consensus 204 s~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l 283 (362)
T 3goz_A 204 SANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNI 283 (362)
T ss_dssp TTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTC
T ss_pred CCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccC
Confidence 88888752 4555555 3588888888888886443 334667889999999998543 234467888
Q ss_pred CCCCeEEccCCcCccCCCchhh
Q 001384 461 TSLLWLNLSNNKLSGNIPPEVM 482 (1088)
Q Consensus 461 ~~L~~L~L~~N~l~g~ip~~~~ 482 (1088)
++|++||+++|++.+..|..+.
T Consensus 284 ~~L~~LdL~~N~l~~~~~~~~~ 305 (362)
T 3goz_A 284 QKIILVDKNGKEIHPSHSIPIS 305 (362)
T ss_dssp CEEEEECTTSCBCCGGGCHHHH
T ss_pred CceEEEecCCCcCCCcchHHHH
Confidence 9999999999999876665543
No 336
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=7.5e-24 Score=244.79 Aligned_cols=239 Identities=20% Similarity=0.227 Sum_probs=174.3
Q ss_pred ccCCCccCEEEcCCCcccccC----cccccCCCCCcEEEccCc---cccCCCcccc-------CCCCCCCEEeCCCCcCC
Q 001384 240 FKENCSLEIFDLSENEFIGDF----PGEVSNCRNLVVLNLFGN---NFSGPIPAEI-------GSISGLEALFLGKNNFL 305 (1088)
Q Consensus 240 ~~~l~~L~~L~Ls~n~l~~~~----p~~l~~l~~L~~L~L~~N---~l~~~~p~~~-------~~l~~L~~L~L~~N~l~ 305 (1088)
+..+++|++|+|++|++++.. +..+..+++|++|+|++| ++.+.+|..+ ..+++|++|+|++|.+.
T Consensus 28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 344556777777777766543 334566777777777774 3444455444 56777777777777777
Q ss_pred c----cCcccccCCCCCcEEEcCCCcCCCchhHhhhc----c---------cccceeecCcCcccCCCCC---ccccCCC
Q 001384 306 S----VIPESLLNLSKLEVLDLSSNNFGGEVQKIFGR----F---------TQVKILALHSNSYIDGMNS---SGILKLP 365 (1088)
Q Consensus 306 ~----~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~----l---------~~L~~L~L~~n~~~~~~~~---~~~~~l~ 365 (1088)
. .+|..+.++++|++|+|++|.+++..+..+.. + ++|+.|++++|.+.....+ ..+..++
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 187 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR 187 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCC
Confidence 6 35666777777777777777776554444333 3 7777777777775433222 3455778
Q ss_pred CcCEEEccCCccCC-----CCCccccCCcCcceeeccccccC----CcCCcccCCCCCCcEEEccCCcCCCC----CCcc
Q 001384 366 NISRLDLSHNNFTG-----PLPVEISQMRSLKFLILAHNRFN----GSIPAVYGNMPNLQTLDLSFNELTGP----IPPS 432 (1088)
Q Consensus 366 ~L~~L~Ls~N~l~~-----~~p~~l~~l~~L~~L~L~~N~l~----~~~p~~~~~l~~L~~L~L~~N~l~~~----~p~~ 432 (1088)
+|++|+|++|+++. ..|..+..+++|+.|+|++|.++ +.+|..+..+++|++|+|++|++++. +|..
T Consensus 188 ~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 267 (386)
T 2ca6_A 188 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDA 267 (386)
T ss_dssp TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHH
T ss_pred CcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHH
Confidence 89999999998872 34447888899999999999995 57888888999999999999999865 5666
Q ss_pred c--cCCCCCcEEEcccccccc----CCCccc-cCCCCCCeEEccCCcCccCCC
Q 001384 433 I--GNLTSLLWLMLANNSLSG----EIPGEI-GNCTSLLWLNLSNNKLSGNIP 478 (1088)
Q Consensus 433 ~--~~l~~L~~L~L~~N~l~~----~~p~~l-~~l~~L~~L~L~~N~l~g~ip 478 (1088)
+ +.+++|++|+|++|.+++ .+|..+ .++++|++|+|++|++++..|
T Consensus 268 l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 268 FSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 6 448999999999999997 488877 678999999999999997664
No 337
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=1.6e-22 Score=225.91 Aligned_cols=226 Identities=17% Similarity=0.172 Sum_probs=180.4
Q ss_pred CCcEEEccCcccccccc------ccCcccceecccCcccccccccccc-cCCCccCEEEcCCCcccccCc----ccccCC
Q 001384 199 NLRYLDLSSNNFRGNIW------NGLAQLVEFSVSENVLSGVVSSSVF-KENCSLEIFDLSENEFIGDFP----GEVSNC 267 (1088)
Q Consensus 199 ~L~~L~Ls~N~l~~~~~------~~l~~L~~L~L~~n~l~~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~p----~~l~~l 267 (1088)
.++.|.+.++.++.... ..+++|++|++++|.+++..+...+ ..+++|++|+|++|.+++..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 46778888777765221 2346799999999999988777666 889999999999999997665 455689
Q ss_pred CCCcEEEccCccccCCCccccCCCCCCCEEeCCCCcCCcc--C--cccccCCCCCcEEEcCCCcCCCchhHhhhcccccc
Q 001384 268 RNLVVLNLFGNNFSGPIPAEIGSISGLEALFLGKNNFLSV--I--PESLLNLSKLEVLDLSSNNFGGEVQKIFGRFTQVK 343 (1088)
Q Consensus 268 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~--~--p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 343 (1088)
++|++|+|++|++.+..+..++.+++|++|+|++|++.+. + +..+..+++|++|+|++|+++........
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~------ 218 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAA------ 218 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHH------
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHH------
Confidence 9999999999999988889999999999999999998753 2 23347889999999999999754332110
Q ss_pred eeecCcCcccCCCCCccccCCCCcCEEEccCCccCCCCCccccCC---cCcceeeccccccCCcCCcccCCCCCCcEEEc
Q 001384 344 ILALHSNSYIDGMNSSGILKLPNISRLDLSHNNFTGPLPVEISQM---RSLKFLILAHNRFNGSIPAVYGNMPNLQTLDL 420 (1088)
Q Consensus 344 ~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l---~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 420 (1088)
.+..+++|++|+|++|++++..|..+..+ ++|++|+|++|+|+ .+|..+. ++|++|+|
T Consensus 219 ----------------l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~L 279 (310)
T 4glp_A 219 ----------------LAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDL 279 (310)
T ss_dssp ----------------HHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEEC
T ss_pred ----------------HHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEEC
Confidence 01245678888888888887778777776 68999999999999 7787764 78999999
Q ss_pred cCCcCCCCCCccccCCCCCcEEEcccccccc
Q 001384 421 SFNELTGPIPPSIGNLTSLLWLMLANNSLSG 451 (1088)
Q Consensus 421 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 451 (1088)
++|+|++ +|. +..+++|++|+|++|+++.
T Consensus 280 s~N~l~~-~~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 280 SSNRLNR-APQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CSCCCCS-CCC-TTSCCCCSCEECSSTTTSC
T ss_pred CCCcCCC-Cch-hhhCCCccEEECcCCCCCC
Confidence 9999995 444 6788999999999999874
No 338
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=4.3e-23 Score=233.73 Aligned_cols=233 Identities=16% Similarity=0.165 Sum_probs=133.7
Q ss_pred cCEEEcCCCcccccCcccccCCCCCcEEEccCccccCC-CccccCCCCCCCEEeCCCCcCCccCcccccCCCCCcEEEcC
Q 001384 246 LEIFDLSENEFIGDFPGEVSNCRNLVVLNLFGNNFSGP-IPAEIGSISGLEALFLGKNNFLSVIPESLLNLSKLEVLDLS 324 (1088)
Q Consensus 246 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~ 324 (1088)
++.|++++|.+.+..+. +..+++|++|+|++|.+++. ++..+..+++|++|+|++|.+++..|..++.+++|++|+|+
T Consensus 72 l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~ 150 (336)
T 2ast_B 72 VIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS 150 (336)
T ss_dssp CSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECT
T ss_pred ceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECC
Confidence 33344444443333222 22344444444444444432 33444444444444444444444444444444444444444
Q ss_pred CC-cCCCc-hhHhhhcccccceeecCcC-cccCCCCCccccCCC-CcCEEEccCC--ccC-CCCCccccCCcCcceeecc
Q 001384 325 SN-NFGGE-VQKIFGRFTQVKILALHSN-SYIDGMNSSGILKLP-NISRLDLSHN--NFT-GPLPVEISQMRSLKFLILA 397 (1088)
Q Consensus 325 ~N-~l~~~-~~~~~~~l~~L~~L~L~~n-~~~~~~~~~~~~~l~-~L~~L~Ls~N--~l~-~~~p~~l~~l~~L~~L~L~ 397 (1088)
+| .+++. .+..+..+++|+.|++++| .+.+...+..+..++ +|++|+|++| .++ +.+|..+..+++|+.|+++
T Consensus 151 ~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~ 230 (336)
T 2ast_B 151 GCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLS 230 (336)
T ss_dssp TCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECT
T ss_pred CCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCC
Confidence 44 34332 3334444444444444444 322111122344566 7777778777 444 3566677788889999999
Q ss_pred ccc-cCCcCCcccCCCCCCcEEEccCCc-CCCCCCccccCCCCCcEEEccccccccCCCccccCC-CCCCeEEccCCcCc
Q 001384 398 HNR-FNGSIPAVYGNMPNLQTLDLSFNE-LTGPIPPSIGNLTSLLWLMLANNSLSGEIPGEIGNC-TSLLWLNLSNNKLS 474 (1088)
Q Consensus 398 ~N~-l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l-~~L~~L~L~~N~l~ 474 (1088)
+|. +++..+..+..+++|++|++++|. +.......++++++|++|++++| ++. ..+..+ .+|..|++++|+++
T Consensus 231 ~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~ 306 (336)
T 2ast_B 231 DSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFT 306 (336)
T ss_dssp TCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSC
T ss_pred CCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCc
Confidence 888 776777788888999999999885 32222225778899999999988 432 234444 34777788999999
Q ss_pred cCCCchhhc
Q 001384 475 GNIPPEVMT 483 (1088)
Q Consensus 475 g~ip~~~~~ 483 (1088)
+..|..++.
T Consensus 307 ~~~~~~~~~ 315 (336)
T 2ast_B 307 TIARPTIGN 315 (336)
T ss_dssp CTTCSSCSS
T ss_pred cccCCcccc
Confidence 888877654
No 339
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=5.2e-23 Score=233.09 Aligned_cols=255 Identities=23% Similarity=0.272 Sum_probs=200.2
Q ss_pred CCcEEEccCccccccccccC--cccceecccCcccccccccccccCCCccCEEEcCCCccccc-CcccccCCCCCcEEEc
Q 001384 199 NLRYLDLSSNNFRGNIWNGL--AQLVEFSVSENVLSGVVSSSVFKENCSLEIFDLSENEFIGD-FPGEVSNCRNLVVLNL 275 (1088)
Q Consensus 199 ~L~~L~Ls~N~l~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~L 275 (1088)
.++.+++++|.+.+..+..+ ++++.|++++|.+++..+. +..+++|++|+|++|.+++. +|..+..+++|++|+|
T Consensus 48 ~~~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~--~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L 125 (336)
T 2ast_B 48 LWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAE--HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 125 (336)
T ss_dssp TSSEEECTTCBCCHHHHHHHHHTTCSEEECTTCEECSCCCS--CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred hheeeccccccCCHHHHHhhhhccceEEEcCCccccccchh--hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence 47889999998887666666 8889999999998876554 44678999999999988765 7888888999999999
Q ss_pred cCccccCCCccccCCCCCCCEEeCCCC-cCCcc-CcccccCCCCCcEEEcCCC-cCCCc-hhHhhhccc-ccceeecCcC
Q 001384 276 FGNNFSGPIPAEIGSISGLEALFLGKN-NFLSV-IPESLLNLSKLEVLDLSSN-NFGGE-VQKIFGRFT-QVKILALHSN 350 (1088)
Q Consensus 276 ~~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~-~p~~l~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~-~L~~L~L~~n 350 (1088)
++|.+++..+..++.+++|++|+|++| .+++. ++..+.++++|++|++++| .+++. ++..+..++ +|+.|++++|
T Consensus 126 ~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 126 EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp TTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred cCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence 999988888888888999999999998 67653 6677888899999999999 88865 577788888 9999999988
Q ss_pred c--ccCCCCCccccCCCCcCEEEccCCc-cCCCCCccccCCcCcceeeccccc-cCCcCCcccCCCCCCcEEEccCCcCC
Q 001384 351 S--YIDGMNSSGILKLPNISRLDLSHNN-FTGPLPVEISQMRSLKFLILAHNR-FNGSIPAVYGNMPNLQTLDLSFNELT 426 (1088)
Q Consensus 351 ~--~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~L~~N~l~ 426 (1088)
. +.+...+..+..+++|++|+|++|. +++..+..+..+++|++|++++|. ++......++++++|+.|++++| ++
T Consensus 206 ~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~ 284 (336)
T 2ast_B 206 RKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VP 284 (336)
T ss_dssp GGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SC
T ss_pred cccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cC
Confidence 4 3323334455678899999999998 777778888889999999999985 33222235778899999999988 44
Q ss_pred CCCCccccCC-CCCcEEEccccccccCCCccccC
Q 001384 427 GPIPPSIGNL-TSLLWLMLANNSLSGEIPGEIGN 459 (1088)
Q Consensus 427 ~~~p~~~~~l-~~L~~L~L~~N~l~~~~p~~l~~ 459 (1088)
. ..+..+ .+|..|++++|++++..|..+++
T Consensus 285 ~---~~~~~l~~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 285 D---GTLQLLKEALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp T---TCHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred H---HHHHHHHhhCcceEEecccCccccCCcccc
Confidence 2 233444 34777778999999888887765
No 340
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=1.7e-23 Score=241.77 Aligned_cols=206 Identities=23% Similarity=0.302 Sum_probs=139.5
Q ss_pred cCCCCCcEEEccCccccC----CCccccCCCCCCCEEeCCCCcCCccCcccc----cCC---------CCCcEEEcCCCc
Q 001384 265 SNCRNLVVLNLFGNNFSG----PIPAEIGSISGLEALFLGKNNFLSVIPESL----LNL---------SKLEVLDLSSNN 327 (1088)
Q Consensus 265 ~~l~~L~~L~L~~N~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l----~~l---------~~L~~L~L~~N~ 327 (1088)
..+++|++|+|++|.+++ .+|..+..+++|++|+|++|.++...+..+ ..+ ++|++|+|++|+
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 455666666666666654 245555556666666666666543322222 222 566666666666
Q ss_pred CC-Cchh---HhhhcccccceeecCcCcccCC----CCCccccCCCCcCEEEccCCccC----CCCCccccCCcCcceee
Q 001384 328 FG-GEVQ---KIFGRFTQVKILALHSNSYIDG----MNSSGILKLPNISRLDLSHNNFT----GPLPVEISQMRSLKFLI 395 (1088)
Q Consensus 328 l~-~~~~---~~~~~l~~L~~L~L~~n~~~~~----~~~~~~~~l~~L~~L~Ls~N~l~----~~~p~~l~~l~~L~~L~ 395 (1088)
++ +..+ ..+..+++|+.|++++|.+... ..+..+..+++|+.|+|++|.++ +.+|..+..+++|++|+
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ 250 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG 250 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEE
Confidence 65 2333 3455666666666666654321 11225667889999999999996 57788899999999999
Q ss_pred ccccccCCc----CCccc--CCCCCCcEEEccCCcCCC----CCCccc-cCCCCCcEEEccccccccCCC--ccc-cCCC
Q 001384 396 LAHNRFNGS----IPAVY--GNMPNLQTLDLSFNELTG----PIPPSI-GNLTSLLWLMLANNSLSGEIP--GEI-GNCT 461 (1088)
Q Consensus 396 L~~N~l~~~----~p~~~--~~l~~L~~L~L~~N~l~~----~~p~~~-~~l~~L~~L~L~~N~l~~~~p--~~l-~~l~ 461 (1088)
|++|++++. +|..+ +.+++|++|+|++|++++ .+|..+ .++++|++|+|++|.+++..| ..+ ..++
T Consensus 251 L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~ 330 (386)
T 2ca6_A 251 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFS 330 (386)
T ss_dssp CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHH
T ss_pred CCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhh
Confidence 999999865 56766 458999999999999997 488888 668999999999999997664 222 2244
Q ss_pred CCCeEEccC
Q 001384 462 SLLWLNLSN 470 (1088)
Q Consensus 462 ~L~~L~L~~ 470 (1088)
+++.+++..
T Consensus 331 ~~~~~~l~~ 339 (386)
T 2ca6_A 331 TRGRGELDE 339 (386)
T ss_dssp HHTCCEECC
T ss_pred hcCcchhhh
Confidence 555555544
No 341
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=7e-21 Score=205.66 Aligned_cols=178 Identities=21% Similarity=0.285 Sum_probs=109.2
Q ss_pred cEEEccCccccCCCccccCCCCCCCEEeCCCCcCCccCcccccCCCCCcEEEcCCCcCCCchhHhhhcccccceeecCcC
Q 001384 271 VVLNLFGNNFSGPIPAEIGSISGLEALFLGKNNFLSVIPESLLNLSKLEVLDLSSNNFGGEVQKIFGRFTQVKILALHSN 350 (1088)
Q Consensus 271 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n 350 (1088)
++++++++.++ .+|..+. ++|+.|+|++|.+.+..+..|.++++|++|+|++|.+++..+..|
T Consensus 17 ~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-------------- 79 (251)
T 3m19_A 17 KEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVF-------------- 79 (251)
T ss_dssp TEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT--------------
T ss_pred eEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHh--------------
Confidence 34444444444 3333332 344555555555554444445555555555555555544333322
Q ss_pred cccCCCCCccccCCCCcCEEEccCCccCCCCCccccCCcCcceeeccccccCCcCCcccCCCCCCcEEEccCCcCCCCCC
Q 001384 351 SYIDGMNSSGILKLPNISRLDLSHNNFTGPLPVEISQMRSLKFLILAHNRFNGSIPAVYGNMPNLQTLDLSFNELTGPIP 430 (1088)
Q Consensus 351 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 430 (1088)
..+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|+|++..+
T Consensus 80 -----------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 148 (251)
T 3m19_A 80 -----------DDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA 148 (251)
T ss_dssp -----------TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred -----------ccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCH
Confidence 234455555555555555555556666777777777777775555566777777888888887775555
Q ss_pred ccccCCCCCcEEEccccccccCCCccccCCCCCCeEEccCCcCccC
Q 001384 431 PSIGNLTSLLWLMLANNSLSGEIPGEIGNCTSLLWLNLSNNKLSGN 476 (1088)
Q Consensus 431 ~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ 476 (1088)
..++++++|++|+|++|++++..|..+..+++|++|+|++|++++.
T Consensus 149 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 149 GAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred HHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 5677778888888888888766666777888888888888888754
No 342
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=3.9e-21 Score=214.22 Aligned_cols=213 Identities=21% Similarity=0.341 Sum_probs=154.6
Q ss_pred eecccCcccccccccccccCCCccCEEEcCCCcccccCcccccCCCCCcEEEccCccccCCCccccCCCCCCCEEeCCCC
Q 001384 223 EFSVSENVLSGVVSSSVFKENCSLEIFDLSENEFIGDFPGEVSNCRNLVVLNLFGNNFSGPIPAEIGSISGLEALFLGKN 302 (1088)
Q Consensus 223 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 302 (1088)
.+.+..+.+++.+. +..+++|++|++++|.++. +| .+..+++|++|+|++|++++. +. +..+++|++|+|++|
T Consensus 23 ~~~l~~~~~~~~~~---~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n 95 (308)
T 1h6u_A 23 KIAAGKSNVTDTVT---QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGN 95 (308)
T ss_dssp HHHTTCSSTTSEEC---HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSC
T ss_pred HHHhCCCCcCceec---HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCC
Confidence 33444444444332 2334577777888777763 44 577778888888888888744 33 777888888888888
Q ss_pred cCCccCcccccCCCCCcEEEcCCCcCCCchhHhhhcccccceeecCcCcccCCCCCccccCCCCcCEEEccCCccCCCCC
Q 001384 303 NFLSVIPESLLNLSKLEVLDLSSNNFGGEVQKIFGRFTQVKILALHSNSYIDGMNSSGILKLPNISRLDLSHNNFTGPLP 382 (1088)
Q Consensus 303 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 382 (1088)
.+.+. ..+..+++|++|+|++|++++..+ +..+++|++|++++|.+++..+
T Consensus 96 ~l~~~--~~~~~l~~L~~L~l~~n~l~~~~~---------------------------l~~l~~L~~L~l~~n~l~~~~~ 146 (308)
T 1h6u_A 96 PLKNV--SAIAGLQSIKTLDLTSTQITDVTP---------------------------LAGLSNLQVLYLDLNQITNISP 146 (308)
T ss_dssp CCSCC--GGGTTCTTCCEEECTTSCCCCCGG---------------------------GTTCTTCCEEECCSSCCCCCGG
T ss_pred cCCCc--hhhcCCCCCCEEECCCCCCCCchh---------------------------hcCCCCCCEEECCCCccCcCcc
Confidence 77763 357777788888888887765321 3456778888888888875433
Q ss_pred ccccCCcCcceeeccccccCCcCCcccCCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEccccccccCCCccccCCCC
Q 001384 383 VEISQMRSLKFLILAHNRFNGSIPAVYGNMPNLQTLDLSFNELTGPIPPSIGNLTSLLWLMLANNSLSGEIPGEIGNCTS 462 (1088)
Q Consensus 383 ~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 462 (1088)
+..+++|+.|++++|++++ ++. +..+++|+.|++++|++++ ++. +..+++|++|+|++|++++.. .+..+++
T Consensus 147 --l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~L~~N~l~~~~--~l~~l~~ 218 (308)
T 1h6u_A 147 --LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISD-ISP-LASLPNLIEVHLKNNQISDVS--PLANTSN 218 (308)
T ss_dssp --GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECTTSCCCBCG--GGTTCTT
T ss_pred --ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCc-Chh-hcCCCCCCEEEccCCccCccc--cccCCCC
Confidence 7888889999999998884 444 8888999999999999985 443 788899999999999998544 3888999
Q ss_pred CCeEEccCCcCccCCCch
Q 001384 463 LLWLNLSNNKLSGNIPPE 480 (1088)
Q Consensus 463 L~~L~L~~N~l~g~ip~~ 480 (1088)
|++|+|++|+++ ..|..
T Consensus 219 L~~L~l~~N~i~-~~~~~ 235 (308)
T 1h6u_A 219 LFIVTLTNQTIT-NQPVF 235 (308)
T ss_dssp CCEEEEEEEEEE-CCCEE
T ss_pred CCEEEccCCeee-cCCee
Confidence 999999999997 34543
No 343
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.85 E-value=1.5e-21 Score=233.25 Aligned_cols=189 Identities=24% Similarity=0.332 Sum_probs=157.0
Q ss_pred CcCEEEccCCccCCCCCccccCCcCcceeeccccccCCcCCcccCCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEcc
Q 001384 366 NISRLDLSHNNFTGPLPVEISQMRSLKFLILAHNRFNGSIPAVYGNMPNLQTLDLSFNELTGPIPPSIGNLTSLLWLMLA 445 (1088)
Q Consensus 366 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 445 (1088)
+|+.|+|++|.+++ +|..+. ++|++|+|++|+|+ .+| ..+++|++|+|++|+|++ +|. +++ +|++|+|+
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 89999999999986 777663 78999999999999 677 457899999999999996 777 665 89999999
Q ss_pred ccccccCCCccccCCCCCCeEEccCCcCccCCCchhhccCCCCCccccccccCCcccccCCccccccccccCCCCCCCcc
Q 001384 446 NNSLSGEIPGEIGNCTSLLWLNLSNNKLSGNIPPEVMTIGRNARPTFEANQRNGERTIAGSSECLSMKRWIPADYPPFSF 525 (1088)
Q Consensus 446 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (1088)
+|+|++ +|. .+++|++|+|++|+|++ +|.. +
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~~---l----------------------------------------- 159 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPEL---P----------------------------------------- 159 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCCC---C-----------------------------------------
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCCc---C-----------------------------------------
Confidence 999996 776 68999999999999984 5541 0
Q ss_pred eeeehhccccchhhhhcccCCcccccccCCCcccceeeeceEEccCCccccccCcccccCCCccEEeccccccccCCCCc
Q 001384 526 VYTILTRKSCRSLWDRLLKGTGIFPVCLPGLASRTFQITGYLQLSGNQLSGELSPDIGKLQNFSMVHLGFNQFDGKLPSQ 605 (1088)
Q Consensus 526 ~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~l~~L~l~~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~p~~ 605 (1088)
..+++|+|++|+|++ +|. ++ ++|+.|+|++|+|+ .+|.
T Consensus 160 ------------------------------------~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~- 197 (571)
T 3cvr_A 160 ------------------------------------TSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA- 197 (571)
T ss_dssp ------------------------------------TTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-
T ss_pred ------------------------------------CCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-
Confidence 124578999999996 777 66 89999999999999 7777
Q ss_pred ccCccc-------eEEEccCCcccccCCccccCCccCcEEEccccccCCcCCcccccccc
Q 001384 606 FDQLPL-------IVLNLTRNNFSGEIPSEFGNIKCLQNLDLSYNNFSGPFPASFNNLTE 658 (1088)
Q Consensus 606 ~~~l~l-------~~l~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~l~~ 658 (1088)
+.. .| +.|+|++|+|+ .||..++.+++|+.|+|++|+|++.+|..+..++.
T Consensus 198 ~~~-~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 198 VPV-RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp CC---------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred HHH-hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 655 66 89999999999 79999988999999999999999999988888765
No 344
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.85 E-value=1.8e-20 Score=202.46 Aligned_cols=180 Identities=21% Similarity=0.254 Sum_probs=150.1
Q ss_pred ccCEEEcCCCcccccCcccccCCCCCcEEEccCccccCCCccccCCCCCCCEEeCCCCcCCccCcccccCCCCCcEEEcC
Q 001384 245 SLEIFDLSENEFIGDFPGEVSNCRNLVVLNLFGNNFSGPIPAEIGSISGLEALFLGKNNFLSVIPESLLNLSKLEVLDLS 324 (1088)
Q Consensus 245 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~ 324 (1088)
+.++++++++.++ .+|..+. ++|+.|+|++|.+++..+..|..+++|++|+|++|.+++..|..|.++++|++|+|+
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 5678888888887 6666665 689999999999998888889999999999999999999888889999999999999
Q ss_pred CCcCCCchhHhhhcccccceeecCcCcccCCCCCccccCCCCcCEEEccCCccCCCCCccccCCcCcceeeccccccCCc
Q 001384 325 SNNFGGEVQKIFGRFTQVKILALHSNSYIDGMNSSGILKLPNISRLDLSHNNFTGPLPVEISQMRSLKFLILAHNRFNGS 404 (1088)
Q Consensus 325 ~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 404 (1088)
+|++++.++..|+ .+++|++|+|++|++++..+..+..+++|++|+|++|++++.
T Consensus 92 ~n~l~~~~~~~~~-------------------------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 146 (251)
T 3m19_A 92 NNQLASLPLGVFD-------------------------HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSI 146 (251)
T ss_dssp TSCCCCCCTTTTT-------------------------TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCcccccChhHhc-------------------------ccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCcc
Confidence 9999876655443 566778888888888866666678888888889988888866
Q ss_pred CCcccCCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEccccccccC
Q 001384 405 IPAVYGNMPNLQTLDLSFNELTGPIPPSIGNLTSLLWLMLANNSLSGE 452 (1088)
Q Consensus 405 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 452 (1088)
.+..|+.+++|++|+|++|++++..+..+..+++|++|+|++|.+++.
T Consensus 147 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 147 PAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 666788888999999999999876666788888999999999988864
No 345
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=3.9e-21 Score=206.06 Aligned_cols=197 Identities=16% Similarity=0.188 Sum_probs=113.1
Q ss_pred CCcEEEccCccccCCCccccCCCCCCCEEeCCCCc-CCccCcccccCCCCCcEEEcCC-CcCCCchhHhhhcccccceee
Q 001384 269 NLVVLNLFGNNFSGPIPAEIGSISGLEALFLGKNN-FLSVIPESLLNLSKLEVLDLSS-NNFGGEVQKIFGRFTQVKILA 346 (1088)
Q Consensus 269 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~ 346 (1088)
+|++|++++|++++..+..|..+++|++|++++|+ +++..+..|.++++|++|+|++ |++++..+..|..+++|+.|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 44444444444443333344444444444444443 4443333444444444444444 444444434444444444444
Q ss_pred cCcCcccCCCCCccccCCCCcC---EEEccCC-ccCCCCCccccCCcCcc-eeeccccccCCcCCcccCCCCCCcEEEcc
Q 001384 347 LHSNSYIDGMNSSGILKLPNIS---RLDLSHN-NFTGPLPVEISQMRSLK-FLILAHNRFNGSIPAVYGNMPNLQTLDLS 421 (1088)
Q Consensus 347 L~~n~~~~~~~~~~~~~l~~L~---~L~Ls~N-~l~~~~p~~l~~l~~L~-~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 421 (1088)
+++|.+.. ++ . +..+++|+ +|++++| .+++..+..|..+++|+ .|++++|+++ .+|......++|+.|+++
T Consensus 112 l~~n~l~~-lp-~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~ 187 (239)
T 2xwt_C 112 IFNTGLKM-FP-D-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLN 187 (239)
T ss_dssp EEEECCCS-CC-C-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECT
T ss_pred CCCCCCcc-cc-c-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcC
Confidence 43333222 11 1 34455555 7888888 77765556677788888 8888888887 555443334778888888
Q ss_pred CCc-CCCCCCccccCC-CCCcEEEccccccccCCCccccCCCCCCeEEccCCc
Q 001384 422 FNE-LTGPIPPSIGNL-TSLLWLMLANNSLSGEIPGEIGNCTSLLWLNLSNNK 472 (1088)
Q Consensus 422 ~N~-l~~~~p~~~~~l-~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~ 472 (1088)
+|+ +++..+..+.++ ++|++|++++|+++ .+|.. .+++|+.|+++++.
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC-
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCceeeccCcc
Confidence 884 775555667777 88888888888887 45544 56778888877653
No 346
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.84 E-value=5.2e-21 Score=228.55 Aligned_cols=211 Identities=23% Similarity=0.320 Sum_probs=140.9
Q ss_pred cccccCCCCCCc-----ccCCc-eeCCCCceeEEeccccccccccccccccCCccCCeeeCCCCCCCCCcCccCCCCCCC
Q 001384 56 HYMQWNQSSSPC-----EWPGI-ICSPDKARVNGLNLTDWNISGDIFNNFSALTQLSYLDLSRNTFSGSIPDDLSSCRSL 129 (1088)
Q Consensus 56 ~~~sW~~~~~~C-----~W~gv-~C~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 129 (1088)
.+.+|..+.++| .|.|+ .|.. .+++.|+|++++|++ +|..+ +++|++|+|++|+|+ .+| ..+++|
T Consensus 32 ~l~~W~~~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L 102 (571)
T 3cvr_A 32 AWDKWEKQALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASL 102 (571)
T ss_dssp HHHHHHTTCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTC
T ss_pred HHHHHhccCCccccccchhhhcccccc--CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCC
Confidence 456787777888 79999 7863 366777777777776 55544 266777777777777 555 345666
Q ss_pred cEEECccccccCcccCCCCCCCceeecccccccccccCchhhhcccceEEeccCccCCCCCCccccCCCCCcEEEccCcc
Q 001384 130 KYLNLSHNILSGDLNLSGLRSLEILDLSVNRIHGEISFSFPAICEKLVVANLSLNNLTGRIDTCFDGCLNLRYLDLSSNN 209 (1088)
Q Consensus 130 ~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~ 209 (1088)
++|+|++|.|++...+.+ + |++|+|++|+|++. |. .+++|++|+|++|+
T Consensus 103 ~~L~Ls~N~l~~ip~l~~--~-------------------------L~~L~Ls~N~l~~l-p~---~l~~L~~L~Ls~N~ 151 (571)
T 3cvr_A 103 EYLDACDNRLSTLPELPA--S-------------------------LKHLDVDNNQLTML-PE---LPALLEYINADNNQ 151 (571)
T ss_dssp CEEECCSSCCSCCCCCCT--T-------------------------CCEEECCSSCCSCC-CC---CCTTCCEEECCSSC
T ss_pred CEEEccCCCCCCcchhhc--C-------------------------CCEEECCCCcCCCC-CC---cCccccEEeCCCCc
Confidence 666666666554322222 4 44445555555542 22 45666666666666
Q ss_pred ccccccccCcccceecccCcccccccccccccCCCccCEEEcCCCcccccCcccccCCCCCcEEEccCccccCCCccccC
Q 001384 210 FRGNIWNGLAQLVEFSVSENVLSGVVSSSVFKENCSLEIFDLSENEFIGDFPGEVSNCRNLVVLNLFGNNFSGPIPAEIG 289 (1088)
Q Consensus 210 l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~ 289 (1088)
+++ ++. .+++|++|+|++|++++ +|. +. ++|++|+|++|+|+ .+|. +.
T Consensus 152 l~~-lp~-------------------------~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~ 199 (571)
T 3cvr_A 152 LTM-LPE-------------------------LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VP 199 (571)
T ss_dssp CSC-CCC-------------------------CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC
T ss_pred cCc-CCC-------------------------cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HH
Confidence 653 111 23466667777776665 555 54 77888888888887 5666 54
Q ss_pred CCCCC-------CEEeCCCCcCCccCcccccCCCCCcEEEcCCCcCCCchhHhhhcccc
Q 001384 290 SISGL-------EALFLGKNNFLSVIPESLLNLSKLEVLDLSSNNFGGEVQKIFGRFTQ 341 (1088)
Q Consensus 290 ~l~~L-------~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 341 (1088)
. +| +.|+|++|+|+. +|..+.++++|+.|+|++|.+++.+|..+..++.
T Consensus 200 ~--~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 200 V--RNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp ----------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred H--hhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 4 66 999999999886 7888888999999999999999999988876543
No 347
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.84 E-value=5.9e-21 Score=204.70 Aligned_cols=197 Identities=19% Similarity=0.213 Sum_probs=138.4
Q ss_pred ccCEEEcCCCcccccCcccccCCCCCcEEEccCcc-ccCCCccccCCCCCCCEEeCCC-CcCCccCcccccCCCCCcEEE
Q 001384 245 SLEIFDLSENEFIGDFPGEVSNCRNLVVLNLFGNN-FSGPIPAEIGSISGLEALFLGK-NNFLSVIPESLLNLSKLEVLD 322 (1088)
Q Consensus 245 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~l~~l~~L~~L~ 322 (1088)
+|++|++++|++++..+..|.++++|++|++++|+ +++..+..|..+++|++|+|++ |++++..+..|.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 56666666666665555566666666666666665 6544444566666666666666 666665556666666666666
Q ss_pred cCCCcCCCchhHhhhcccccc---eeecCcCcccCCCCCccccCCCCcC-EEEccCCccCCCCCccccCCcCcceeeccc
Q 001384 323 LSSNNFGGEVQKIFGRFTQVK---ILALHSNSYIDGMNSSGILKLPNIS-RLDLSHNNFTGPLPVEISQMRSLKFLILAH 398 (1088)
Q Consensus 323 L~~N~l~~~~~~~~~~l~~L~---~L~L~~n~~~~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~ 398 (1088)
+++|.+++.+ . |+.+++|+ .|++++|..+.......|..+++|+ .|++++|+++ .+|......++|+.|++++
T Consensus 112 l~~n~l~~lp-~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~ 188 (239)
T 2xwt_C 112 IFNTGLKMFP-D-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNK 188 (239)
T ss_dssp EEEECCCSCC-C-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTT
T ss_pred CCCCCCcccc-c-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCC
Confidence 6666666533 2 56666665 6666666334445555667788888 9999999988 5565544448999999999
Q ss_pred cc-cCCcCCcccCCC-CCCcEEEccCCcCCCCCCccccCCCCCcEEEcccc
Q 001384 399 NR-FNGSIPAVYGNM-PNLQTLDLSFNELTGPIPPSIGNLTSLLWLMLANN 447 (1088)
Q Consensus 399 N~-l~~~~p~~~~~l-~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 447 (1088)
|+ +++..+..|..+ ++|+.|++++|+++ .+|.. .+++|+.|+++++
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC
T ss_pred CCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCceeeccCc
Confidence 95 986667788899 99999999999999 56654 6789999999876
No 348
>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*
Probab=99.83 E-value=2e-21 Score=212.95 Aligned_cols=153 Identities=16% Similarity=0.117 Sum_probs=120.2
Q ss_pred HHHHHHHcCCCCccceecccCceEEEEEEeCCCcEEEEEEccccCc------------------cchHHHHHHHHHHhCC
Q 001384 797 YSDILKATGKFSEDRIIGKGGFGTVYRGVLPDGREVAVKKLQREGL------------------EGEREFRAEMEVLSGN 858 (1088)
Q Consensus 797 ~~~~~~~~~~~~~~~~LG~G~~g~Vy~~~~~~~~~vavK~~~~~~~------------------~~~~~~~~E~~~l~~~ 858 (1088)
...+......|++.+.||+|+||.||+|.+.+|+.||||+++.... .....+.+|+++++++
T Consensus 82 l~~~~~~~~~~~~~~~iG~G~~g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l 161 (282)
T 1zar_A 82 LHRLVRSGKVDAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKL 161 (282)
T ss_dssp HHHHHHTTSCSEEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCeEEEecCEeccCCCceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhc
Confidence 3444555677888899999999999999997799999999974321 1235688999999974
Q ss_pred CCCCCCCceeEEeeEEecCCeEEEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCC
Q 001384 859 GFGWPHPNLVTLYGWCLDGSEKILVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASN 938 (1088)
Q Consensus 859 ~~~l~h~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~N 938 (1088)
+ | +++.+++.. +..++||||++||+|.+ +.. .+...++.|++.||+|||+. +|+||||||+|
T Consensus 162 ----~--~-~~v~~~~~~-~~~~lvmE~~~g~~L~~-l~~------~~~~~i~~qi~~~l~~lH~~---giiHrDlkp~N 223 (282)
T 1zar_A 162 ----Q--G-LAVPKVYAW-EGNAVLMELIDAKELYR-VRV------ENPDEVLDMILEEVAKFYHR---GIVHGDLSQYN 223 (282)
T ss_dssp ----T--T-SSSCCEEEE-ETTEEEEECCCCEEGGG-CCC------SCHHHHHHHHHHHHHHHHHT---TEECSCCSTTS
T ss_pred ----c--C-CCcCeEEec-cceEEEEEecCCCcHHH-cch------hhHHHHHHHHHHHHHHHHHC---CCEeCCCCHHH
Confidence 3 3 455554433 55699999999999988 422 33457999999999999999 99999999999
Q ss_pred EEEcCCCCEEEeecccceeecCCCCcccccccccccccCccccC
Q 001384 939 VLLDKEGKALVTDFGLARVVSAGDSHVSTTIAGTVGYVAPEYGQ 982 (1088)
Q Consensus 939 Ill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~gt~~y~aPE~~~ 982 (1088)
|+++ ++.+||+|||+|+.. ..+.|||++.
T Consensus 224 ILl~-~~~vkl~DFG~a~~~--------------~~~~a~e~l~ 252 (282)
T 1zar_A 224 VLVS-EEGIWIIDFPQSVEV--------------GEEGWREILE 252 (282)
T ss_dssp EEEE-TTEEEECCCTTCEET--------------TSTTHHHHHH
T ss_pred EEEE-CCcEEEEECCCCeEC--------------CCCCHHHHHH
Confidence 9999 999999999999743 3467788653
No 349
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.83 E-value=4.5e-20 Score=205.56 Aligned_cols=178 Identities=21% Similarity=0.323 Sum_probs=140.6
Q ss_pred cccCCCccCEEEcCCCcccccCcccccCCCCCcEEEccCccccCCCccccCCCCCCCEEeCCCCcCCccCcccccCCCCC
Q 001384 239 VFKENCSLEIFDLSENEFIGDFPGEVSNCRNLVVLNLFGNNFSGPIPAEIGSISGLEALFLGKNNFLSVIPESLLNLSKL 318 (1088)
Q Consensus 239 ~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 318 (1088)
.+..+++|++|+|++|++++..+ +..+++|++|+|++|++++. +.+..+++|++|+|++|++++. + .+..+++|
T Consensus 58 ~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L 131 (308)
T 1h6u_A 58 GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDV-T-PLAGLSNL 131 (308)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEECTTSCCCCC-G-GGTTCTTC
T ss_pred hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEECCCCCCCCc-h-hhcCCCCC
Confidence 35667889999999999885444 89999999999999999853 3689999999999999999874 3 38999999
Q ss_pred cEEEcCCCcCCCchhHhhhcccccceeecCcCcccCCCCCccccCCCCcCEEEccCCccCCCCCccccCCcCcceeeccc
Q 001384 319 EVLDLSSNNFGGEVQKIFGRFTQVKILALHSNSYIDGMNSSGILKLPNISRLDLSHNNFTGPLPVEISQMRSLKFLILAH 398 (1088)
Q Consensus 319 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~ 398 (1088)
++|+|++|.+++..+ ++ .+++|++|+|++|++++. +. +..+++|+.|++++
T Consensus 132 ~~L~l~~n~l~~~~~--l~-------------------------~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~ 182 (308)
T 1h6u_A 132 QVLYLDLNQITNISP--LA-------------------------GLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADD 182 (308)
T ss_dssp CEEECCSSCCCCCGG--GG-------------------------GCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCS
T ss_pred CEEECCCCccCcCcc--cc-------------------------CCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCC
Confidence 999999999986543 33 456777777888877753 33 77888888888888
Q ss_pred cccCCcCCcccCCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEccccccccCCCcc
Q 001384 399 NRFNGSIPAVYGNMPNLQTLDLSFNELTGPIPPSIGNLTSLLWLMLANNSLSGEIPGE 456 (1088)
Q Consensus 399 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 456 (1088)
|++++. +. +..+++|++|++++|++++ ++ .+..+++|++|+|++|.+++ .|..
T Consensus 183 n~l~~~-~~-l~~l~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~l~~N~i~~-~~~~ 235 (308)
T 1h6u_A 183 NKISDI-SP-LASLPNLIEVHLKNNQISD-VS-PLANTSNLFIVTLTNQTITN-QPVF 235 (308)
T ss_dssp SCCCCC-GG-GGGCTTCCEEECTTSCCCB-CG-GGTTCTTCCEEEEEEEEEEC-CCEE
T ss_pred CccCcC-hh-hcCCCCCCEEEccCCccCc-cc-cccCCCCCCEEEccCCeeec-CCee
Confidence 888843 33 7788888888888888885 44 37888888888888888874 4443
No 350
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.83 E-value=2.5e-20 Score=211.85 Aligned_cols=225 Identities=18% Similarity=0.152 Sum_probs=167.3
Q ss_pred CccCEEEcCCCcccccCcccccCCCCCcEEEccCccccCCCcc-ccCCCCCCCE-EeCCCCcCCccCcccccCCCCCcEE
Q 001384 244 CSLEIFDLSENEFIGDFPGEVSNCRNLVVLNLFGNNFSGPIPA-EIGSISGLEA-LFLGKNNFLSVIPESLLNLSKLEVL 321 (1088)
Q Consensus 244 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~-L~L~~N~l~~~~p~~l~~l~~L~~L 321 (1088)
+++++|+|++|+|+...+.+|.++++|++|+|++|++.+.+|. .|.++++|.+ +.++.|+++...|..|..+++|++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 4677778888877765556778888888888888887655553 5677777665 5566678877777788888888888
Q ss_pred EcCCCcCCCchhHhhhcccccceeecCcCcccCCCCCccccCCC-CcCEEEccCCccCCCCCccccCCcCcceeeccc-c
Q 001384 322 DLSSNNFGGEVQKIFGRFTQVKILALHSNSYIDGMNSSGILKLP-NISRLDLSHNNFTGPLPVEISQMRSLKFLILAH-N 399 (1088)
Q Consensus 322 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~-N 399 (1088)
++++|++....+..+....++..|++.++..+..+....|..+. .++.|+|++|+|+ .+|.......+|+.|++++ |
T Consensus 110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n 188 (350)
T 4ay9_X 110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNN 188 (350)
T ss_dssp EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCT
T ss_pred cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-CCChhhccccchhHHhhccCC
Confidence 88888888777777777777777777666555555666666554 6889999999999 5666666678899999975 6
Q ss_pred ccCCcCCcccCCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEccccccccCCCccccCCCCCCeEEccCCcC
Q 001384 400 RFNGSIPAVYGNMPNLQTLDLSFNELTGPIPPSIGNLTSLLWLMLANNSLSGEIPGEIGNCTSLLWLNLSNNKL 473 (1088)
Q Consensus 400 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l 473 (1088)
.++...++.|..+++|++|||++|+|+ .+|.. .+.+|+.|.+.++.--..+| .+.++++|+.++++++.-
T Consensus 189 ~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~--~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~~~ 258 (350)
T 4ay9_X 189 NLEELPNDVFHGASGPVILDISRTRIH-SLPSY--GLENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYPSH 258 (350)
T ss_dssp TCCCCCTTTTTTEECCSEEECTTSCCC-CCCSS--SCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCHHH
T ss_pred cccCCCHHHhccCcccchhhcCCCCcC-ccChh--hhccchHhhhccCCCcCcCC-CchhCcChhhCcCCCCcc
Confidence 777444457899999999999999999 56653 35667777665554334777 488999999999986653
No 351
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=3.2e-20 Score=210.97 Aligned_cols=241 Identities=20% Similarity=0.201 Sum_probs=159.1
Q ss_pred ceeecccccccccccCchhhhcccceEEeccCccCCCCCCccccCCCCCcEEEccCccccccccccCcccceecccCccc
Q 001384 152 EILDLSVNRIHGEISFSFPAICEKLVVANLSLNNLTGRIDTCFDGCLNLRYLDLSSNNFRGNIWNGLAQLVEFSVSENVL 231 (1088)
Q Consensus 152 ~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~n~l 231 (1088)
+.++.++++++ .+|..++ .++++|+|++|+|+.+.+.+|.++++|++|+|++|++.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l~---~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~------------------- 68 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE------------------- 68 (350)
T ss_dssp TEEEEESTTCC-SCCTTCC---TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCC-------------------
T ss_pred CEEEecCCCCC-ccCcCcC---CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCC-------------------
Confidence 34566666666 4454442 467777777777777777778888888888888777643
Q ss_pred ccccccccccCCCccCE-EEcCCCcccccCcccccCCCCCcEEEccCccccCCCccccCCCCCCCEEeCCC-CcCCccCc
Q 001384 232 SGVVSSSVFKENCSLEI-FDLSENEFIGDFPGEVSNCRNLVVLNLFGNNFSGPIPAEIGSISGLEALFLGK-NNFLSVIP 309 (1088)
Q Consensus 232 ~~~~~~~~~~~l~~L~~-L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p 309 (1088)
.++...|.+++++++ +.++.|+++...|..|.++++|++|++++|++++..+..+....++..|++.+ |++....+
T Consensus 69 --~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~ 146 (350)
T 4ay9_X 69 --VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIER 146 (350)
T ss_dssp --EECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECT
T ss_pred --ccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccc
Confidence 345566777777664 56667888877788888899999999999988866666666777788888855 56666555
Q ss_pred ccccCCC-CCcEEEcCCCcCCCchhHhhhcccccceeecCcCcccCCCCCccccCCCCcCEEEccC-CccCCCCCccccC
Q 001384 310 ESLLNLS-KLEVLDLSSNNFGGEVQKIFGRFTQVKILALHSNSYIDGMNSSGILKLPNISRLDLSH-NNFTGPLPVEISQ 387 (1088)
Q Consensus 310 ~~l~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~p~~l~~ 387 (1088)
..|..+. .++.|+|++|+|+...+..|. ..+|++|++++ |.++...+..|..
T Consensus 147 ~~f~~~~~~l~~L~L~~N~i~~i~~~~f~--------------------------~~~L~~l~l~~~n~l~~i~~~~f~~ 200 (350)
T 4ay9_X 147 NSFVGLSFESVILWLNKNGIQEIHNSAFN--------------------------GTQLDELNLSDNNNLEELPNDVFHG 200 (350)
T ss_dssp TSSTTSBSSCEEEECCSSCCCEECTTSST--------------------------TEEEEEEECTTCTTCCCCCTTTTTT
T ss_pred cchhhcchhhhhhccccccccCCChhhcc--------------------------ccchhHHhhccCCcccCCCHHHhcc
Confidence 6666664 588888888888765554442 23456666653 4444332345667
Q ss_pred CcCcceeeccccccCCcCCcccCCCCCCcEEEccCCc-CCCCCCccccCCCCCcEEEccccc
Q 001384 388 MRSLKFLILAHNRFNGSIPAVYGNMPNLQTLDLSFNE-LTGPIPPSIGNLTSLLWLMLANNS 448 (1088)
Q Consensus 388 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~L~~N~ 448 (1088)
+++|+.|+|++|+|+ .+|.. .+.+|+.|.+.++. ++ .+| .+.++++|+.+++.++.
T Consensus 201 l~~L~~LdLs~N~l~-~lp~~--~~~~L~~L~~l~~~~l~-~lP-~l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 201 ASGPVILDISRTRIH-SLPSY--GLENLKKLRARSTYNLK-KLP-TLEKLVALMEASLTYPS 257 (350)
T ss_dssp EECCSEEECTTSCCC-CCCSS--SCTTCCEEECTTCTTCC-CCC-CTTTCCSCCEEECSCHH
T ss_pred CcccchhhcCCCCcC-ccChh--hhccchHhhhccCCCcC-cCC-CchhCcChhhCcCCCCc
Confidence 777777777777777 44432 23444455444433 33 566 36677777777776654
No 352
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=8e-20 Score=191.30 Aligned_cols=181 Identities=20% Similarity=0.243 Sum_probs=98.4
Q ss_pred CEEEcCCCcccccCcccccCCCCCcEEEccCccccCCCccccCCCCCCCEEeCCCCcCCccCcccccCCCCCcEEEcCCC
Q 001384 247 EIFDLSENEFIGDFPGEVSNCRNLVVLNLFGNNFSGPIPAEIGSISGLEALFLGKNNFLSVIPESLLNLSKLEVLDLSSN 326 (1088)
Q Consensus 247 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N 326 (1088)
+.++.+++.++ .+|..+ .++|++|++++|++++..+..+..+++|++|+|++|++++..+..|..+++|++|+|++|
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 34555555554 334333 246666666666666544445566666666666666666554445555666666666666
Q ss_pred cCCCchhHhhhcccccceeecCcCcccCCCCCccccCCCCcCEEEccCCccCCCCCccccCCcCcceeeccccccCCcCC
Q 001384 327 NFGGEVQKIFGRFTQVKILALHSNSYIDGMNSSGILKLPNISRLDLSHNNFTGPLPVEISQMRSLKFLILAHNRFNGSIP 406 (1088)
Q Consensus 327 ~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p 406 (1088)
++++.++..| ..+++|++|+|++|++++..+..+..+++|++|++++|++++..+
T Consensus 87 ~l~~~~~~~~-------------------------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 141 (208)
T 2o6s_A 87 QLQSLPNGVF-------------------------DKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD 141 (208)
T ss_dssp CCCCCCTTTT-------------------------TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred cCCccCHhHh-------------------------cCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCH
Confidence 5554333222 234455555555555554444445555556666666655554444
Q ss_pred cccCCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEccccccccCCCccccCCCC
Q 001384 407 AVYGNMPNLQTLDLSFNELTGPIPPSIGNLTSLLWLMLANNSLSGEIPGEIGNCTS 462 (1088)
Q Consensus 407 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 462 (1088)
..+..+++|++|++++|.+.+ .+++|++|+++.|+++|.+|..+++++.
T Consensus 142 ~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 142 GVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp TTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred HHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 445555556666666555542 2334555555555555555555554443
No 353
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.81 E-value=1.7e-19 Score=188.75 Aligned_cols=181 Identities=22% Similarity=0.280 Sum_probs=149.1
Q ss_pred cEEEccCccccCCCccccCCCCCCCEEeCCCCcCCccCcccccCCCCCcEEEcCCCcCCCchhHhhhcccccceeecCcC
Q 001384 271 VVLNLFGNNFSGPIPAEIGSISGLEALFLGKNNFLSVIPESLLNLSKLEVLDLSSNNFGGEVQKIFGRFTQVKILALHSN 350 (1088)
Q Consensus 271 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n 350 (1088)
+.++.+++.++ .+|..+ .++|++|+|++|++++..+..+..+++|++|+|++|++++..+..
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--------------- 71 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGV--------------- 71 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTT---------------
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhh---------------
Confidence 56777888777 455444 357888888888888766667778888888888888877554433
Q ss_pred cccCCCCCccccCCCCcCEEEccCCccCCCCCccccCCcCcceeeccccccCCcCCcccCCCCCCcEEEccCCcCCCCCC
Q 001384 351 SYIDGMNSSGILKLPNISRLDLSHNNFTGPLPVEISQMRSLKFLILAHNRFNGSIPAVYGNMPNLQTLDLSFNELTGPIP 430 (1088)
Q Consensus 351 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 430 (1088)
+..+++|++|+|++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+
T Consensus 72 ----------~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 141 (208)
T 2o6s_A 72 ----------FNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD 141 (208)
T ss_dssp ----------TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred ----------cCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCH
Confidence 4467889999999999997767778999999999999999997777778999999999999999997666
Q ss_pred ccccCCCCCcEEEccccccccCCCccccCCCCCCeEEccCCcCccCCCchhhccCC
Q 001384 431 PSIGNLTSLLWLMLANNSLSGEIPGEIGNCTSLLWLNLSNNKLSGNIPPEVMTIGR 486 (1088)
Q Consensus 431 ~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~~~~~~~ 486 (1088)
..+..+++|++|+|++|.+.+ .+++|++|+++.|+++|.+|+.++.+..
T Consensus 142 ~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 142 GVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp TTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred HHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 678999999999999998874 4568999999999999999998876543
No 354
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.76 E-value=1.5e-18 Score=209.83 Aligned_cols=171 Identities=23% Similarity=0.335 Sum_probs=95.3
Q ss_pred CCCccCEEEcCCCcccccCcccccCCCCCcEEEccCccccCCCccccCCCCCCCEEeCCCCcCCccCcccccCCCCCcEE
Q 001384 242 ENCSLEIFDLSENEFIGDFPGEVSNCRNLVVLNLFGNNFSGPIPAEIGSISGLEALFLGKNNFLSVIPESLLNLSKLEVL 321 (1088)
Q Consensus 242 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 321 (1088)
.+.+|+.|++++|.+.. +| .+..+++|+.|+|++|++++..+ +..+++|+.|+|++|.+.+. ..+..+++|+.|
T Consensus 41 ~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L 114 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKLKSL 114 (605)
T ss_dssp HHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTCCEE
T ss_pred cCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCCCCEE
Confidence 34456666666666553 23 35666666666666666664433 66666666666666666552 256666666777
Q ss_pred EcCCCcCCCchhHhhhcccccceeecCcCcccCCCCCccccCCCCcCEEEccCCccCCCCCccccCCcCcceeecccccc
Q 001384 322 DLSSNNFGGEVQKIFGRFTQVKILALHSNSYIDGMNSSGILKLPNISRLDLSHNNFTGPLPVEISQMRSLKFLILAHNRF 401 (1088)
Q Consensus 322 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l 401 (1088)
+|++|.+++. ..+..+++|+.|+|++|.+... ..+..+++|+.|+|++|.+++..| +..+++|+.|+|++|+|
T Consensus 115 ~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l---~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i 187 (605)
T 1m9s_A 115 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 187 (605)
T ss_dssp ECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC---GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EecCCCCCCC--ccccCCCccCEEECCCCccCCc---hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCC
Confidence 7766666643 2244444444444444433221 234455556666666666654433 55556666666666666
Q ss_pred CCcCCcccCCCCCCcEEEccCCcCCC
Q 001384 402 NGSIPAVYGNMPNLQTLDLSFNELTG 427 (1088)
Q Consensus 402 ~~~~p~~~~~l~~L~~L~L~~N~l~~ 427 (1088)
++ +| .+..+++|+.|+|++|++++
T Consensus 188 ~~-l~-~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 188 SD-LR-ALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CB-CG-GGTTCTTCSEEECCSEEEEC
T ss_pred CC-Ch-HHccCCCCCEEEccCCcCcC
Confidence 53 22 35556666666666666553
No 355
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.76 E-value=1.7e-19 Score=223.91 Aligned_cols=82 Identities=16% Similarity=0.239 Sum_probs=22.9
Q ss_pred cccCCCccEEeccccccccCCCCcccCcc--ceEEEccCCcccccCCccccCCccCcEEEcccc--------ccCCcCCc
Q 001384 582 IGKLQNFSMVHLGFNQFDGKLPSQFDQLP--LIVLNLTRNNFSGEIPSEFGNIKCLQNLDLSYN--------NFSGPFPA 651 (1088)
Q Consensus 582 ~~~l~~L~~L~l~~N~l~g~~p~~~~~l~--l~~l~l~~N~l~~~~p~~~~~l~~L~~L~l~~N--------~l~g~~p~ 651 (1088)
|+++++|+.|+|++|.|+|.+|..++.+. ...++|++|.++|.+|.++ +.|++++| .|.+.++.
T Consensus 312 ~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l------~~l~l~~n~~~~~~~~~l~~~~~~ 385 (727)
T 4b8c_D 312 FGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHER------RFIEINTDGEPQREYDSLQQSTEH 385 (727)
T ss_dssp TTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-------------------------------
T ss_pred hhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcccc------ceeEeecccccccccCCccccccc
Confidence 34444444444444444444444443331 2234555555555555432 33344444 44445555
Q ss_pred ccccccccceeeccCCCC
Q 001384 652 SFNNLTELSKLNISYNPL 669 (1088)
Q Consensus 652 ~~~~l~~L~~l~l~~N~l 669 (1088)
.+.++.++....+++|-+
T Consensus 386 ~~~~l~~~~~~~ls~Nil 403 (727)
T 4b8c_D 386 LATDLAKRTFTVLSYNTL 403 (727)
T ss_dssp ----------------CC
T ss_pred hhhcccccceeeeecccc
Confidence 666777777788888877
No 356
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=3.2e-18 Score=188.86 Aligned_cols=189 Identities=24% Similarity=0.355 Sum_probs=99.5
Q ss_pred ccceecccCcccccccccccccCCCccCEEEcCCCcccccCcccccCCCCCcEEEccCccccCCCccccCCCCCCCEEeC
Q 001384 220 QLVEFSVSENVLSGVVSSSVFKENCSLEIFDLSENEFIGDFPGEVSNCRNLVVLNLFGNNFSGPIPAEIGSISGLEALFL 299 (1088)
Q Consensus 220 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 299 (1088)
++..+.+..+.+++... +..+++|+.|++++|.+... + .+..+++|++|+|++|++++..+ +..+++|+.|+|
T Consensus 25 ~~~~~~l~~~~~~~~~~---~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l 97 (291)
T 1h6t_A 25 ETIKDNLKKKSVTDAVT---QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFL 97 (291)
T ss_dssp HHHHHHTTCSCTTSEEC---HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred HHHHHHhcCCCcccccc---hhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEEC
Confidence 34444555555544322 22344556666666655432 2 25555556666666655553322 555555555555
Q ss_pred CCCcCCccCcccccCCCCCcEEEcCCCcCCCchhHhhhcccccceeecCcCcccCCCCCccccCCCCcCEEEccCCccCC
Q 001384 300 GKNNFLSVIPESLLNLSKLEVLDLSSNNFGGEVQKIFGRFTQVKILALHSNSYIDGMNSSGILKLPNISRLDLSHNNFTG 379 (1088)
Q Consensus 300 ~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 379 (1088)
++|.+++. ..+..+++|++|+|++|++++. ..+..+++|+.|++++|++++
T Consensus 98 ~~n~l~~~--~~l~~l~~L~~L~L~~n~i~~~---------------------------~~l~~l~~L~~L~l~~n~l~~ 148 (291)
T 1h6t_A 98 DENKVKDL--SSLKDLKKLKSLSLEHNGISDI---------------------------NGLVHLPQLESLYLGNNKITD 148 (291)
T ss_dssp CSSCCCCG--GGGTTCTTCCEEECTTSCCCCC---------------------------GGGGGCTTCCEEECCSSCCCC
T ss_pred CCCcCCCC--hhhccCCCCCEEECCCCcCCCC---------------------------hhhcCCCCCCEEEccCCcCCc
Confidence 55555442 2255555555555555555432 122344556666666666654
Q ss_pred CCCccccCCcCcceeeccccccCCcCCcccCCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEccccccc
Q 001384 380 PLPVEISQMRSLKFLILAHNRFNGSIPAVYGNMPNLQTLDLSFNELTGPIPPSIGNLTSLLWLMLANNSLS 450 (1088)
Q Consensus 380 ~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 450 (1088)
. ..+..+++|+.|++++|++++..| +..+++|+.|++++|++++ +| .+..+++|+.|++++|+++
T Consensus 149 ~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 149 I--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp C--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEE
T ss_pred c--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCccc
Confidence 3 355556666666666666654333 5566666666666666653 33 2555666666666666655
No 357
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.76 E-value=1.2e-18 Score=210.74 Aligned_cols=192 Identities=21% Similarity=0.255 Sum_probs=116.7
Q ss_pred eEEeccccccccccccccccCCccCCeeeCCCCCCCCCcCccCCCCCCCcEEECccccccCcccCCCCCCCceeeccccc
Q 001384 81 VNGLNLTDWNISGDIFNNFSALTQLSYLDLSRNTFSGSIPDDLSSCRSLKYLNLSHNILSGDLNLSGLRSLEILDLSVNR 160 (1088)
Q Consensus 81 v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~N~ 160 (1088)
+..++|..+.+.+.++ +..|++|+.|+|++|.++. +| .++.+++|++|+|++|.+++...+..+++|++|+|++|.
T Consensus 23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~ 98 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENK 98 (605)
T ss_dssp HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSC
T ss_pred HHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCC
Confidence 3444555555554432 4566666667777666653 33 466666666666666666655555555666666655555
Q ss_pred ccccccCchhhhcccceEEeccCccCCCCCCccccCCCCCcEEEccCccccccccccCcccceecccCcccccccccccc
Q 001384 161 IHGEISFSFPAICEKLVVANLSLNNLTGRIDTCFDGCLNLRYLDLSSNNFRGNIWNGLAQLVEFSVSENVLSGVVSSSVF 240 (1088)
Q Consensus 161 l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 240 (1088)
|+ +. ..+..+++|++|+|++|++++. ..+
T Consensus 99 l~-------------------------~l--~~l~~l~~L~~L~Ls~N~l~~l------------------------~~l 127 (605)
T 1m9s_A 99 IK-------------------------DL--SSLKDLKKLKSLSLEHNGISDI------------------------NGL 127 (605)
T ss_dssp CC-------------------------CC--TTSTTCTTCCEEECTTSCCCCC------------------------GGG
T ss_pred CC-------------------------CC--hhhccCCCCCEEEecCCCCCCC------------------------ccc
Confidence 54 21 1356666777777776665530 123
Q ss_pred cCCCccCEEEcCCCcccccCcccccCCCCCcEEEccCccccCCCccccCCCCCCCEEeCCCCcCCccCcccccCCCCCcE
Q 001384 241 KENCSLEIFDLSENEFIGDFPGEVSNCRNLVVLNLFGNNFSGPIPAEIGSISGLEALFLGKNNFLSVIPESLLNLSKLEV 320 (1088)
Q Consensus 241 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 320 (1088)
..+++|+.|+|++|++++. ..+..+++|+.|+|++|++++..| +..+++|+.|+|++|++.+. ..+..+++|+.
T Consensus 128 ~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~ 201 (605)
T 1m9s_A 128 VHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDV 201 (605)
T ss_dssp GGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSE
T ss_pred cCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCE
Confidence 4455666666666666643 456677777777777777775544 66777777777777777663 34667777777
Q ss_pred EEcCCCcCCCchh
Q 001384 321 LDLSSNNFGGEVQ 333 (1088)
Q Consensus 321 L~L~~N~l~~~~~ 333 (1088)
|+|++|.+.+.+.
T Consensus 202 L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 202 LELFSQECLNKPI 214 (605)
T ss_dssp EECCSEEEECCCC
T ss_pred EEccCCcCcCCcc
Confidence 7777777665433
No 358
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.75 E-value=2.3e-18 Score=189.98 Aligned_cols=191 Identities=20% Similarity=0.282 Sum_probs=159.0
Q ss_pred CCCCcEEEccCcccccc-ccccCcccceecccCcccccccccccccCCCccCEEEcCCCcccccCcccccCCCCCcEEEc
Q 001384 197 CLNLRYLDLSSNNFRGN-IWNGLAQLVEFSVSENVLSGVVSSSVFKENCSLEIFDLSENEFIGDFPGEVSNCRNLVVLNL 275 (1088)
Q Consensus 197 l~~L~~L~Ls~N~l~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 275 (1088)
+.++..+.+..+.+++. ....+++|+.|++++|.+++. ..+..+++|++|+|++|++++..+ +.++++|++|++
T Consensus 23 l~~~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~---~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l 97 (291)
T 1h6t_A 23 FAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSV---QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFL 97 (291)
T ss_dssp HHHHHHHHTTCSCTTSEECHHHHHTCCEEECTTSCCCCC---TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred HHHHHHHHhcCCCcccccchhhcCcccEEEccCCCcccC---hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEEC
Confidence 44455666777777663 245789999999999999865 247889999999999999986544 999999999999
Q ss_pred cCccccCCCccccCCCCCCCEEeCCCCcCCccCcccccCCCCCcEEEcCCCcCCCchhHhhhcccccceeecCcCcccCC
Q 001384 276 FGNNFSGPIPAEIGSISGLEALFLGKNNFLSVIPESLLNLSKLEVLDLSSNNFGGEVQKIFGRFTQVKILALHSNSYIDG 355 (1088)
Q Consensus 276 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~ 355 (1088)
++|++++ ++ .+..+++|++|+|++|++++. ..+..+++|++|++++|++++. ..
T Consensus 98 ~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~-------------------- 151 (291)
T 1h6t_A 98 DENKVKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TV-------------------- 151 (291)
T ss_dssp CSSCCCC-GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GG--------------------
T ss_pred CCCcCCC-Ch-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hh--------------------
Confidence 9999985 33 499999999999999999885 5788999999999999999864 22
Q ss_pred CCCccccCCCCcCEEEccCCccCCCCCccccCCcCcceeeccccccCCcCCcccCCCCCCcEEEccCCcCCC
Q 001384 356 MNSSGILKLPNISRLDLSHNNFTGPLPVEISQMRSLKFLILAHNRFNGSIPAVYGNMPNLQTLDLSFNELTG 427 (1088)
Q Consensus 356 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 427 (1088)
+..+++|+.|+|++|++++..| +..+++|+.|++++|++++ +|. +..+++|+.|++++|+++.
T Consensus 152 -----l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~~-l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 152 -----LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LRA-LAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp -----GGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CGG-GTTCTTCSEEEEEEEEEEC
T ss_pred -----hccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Chh-hccCCCCCEEECcCCcccC
Confidence 3456788889999999986544 8889999999999999984 554 8899999999999999984
No 359
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.75 E-value=3.7e-19 Score=220.76 Aligned_cols=209 Identities=22% Similarity=0.231 Sum_probs=101.7
Q ss_pred CchhhHHHHHHHHhhcccCCCCCcccccccCC-CCCCcccCCceeCCCCceeEEeccccccccccccccccCCccCCeee
Q 001384 31 SLETDREVLSNLRSFLENNNPVNEGHYMQWNQ-SSSPCEWPGIICSPDKARVNGLNLTDWNISGDIFNNFSALTQLSYLD 109 (1088)
Q Consensus 31 ~~~~d~~~l~~~~~~~~~~~~~~~~~~~sW~~-~~~~C~W~gv~C~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~ 109 (1088)
....++++|.++........ +..-..|.. .+.++.|.+++++. .+++.|+|.++++... + ...|+.++
T Consensus 129 ~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~s~--~~~~~l~L~~n~~~~~-~-----~~~l~~l~ 197 (727)
T 4b8c_D 129 LVDCTKQALMEMADTLTDSK---TAKKQQPTGDSTPSGTATNSAVST--PLTPKIELFANGKDEA-N-----QALLQHKK 197 (727)
T ss_dssp ---CCCHHHHHHHHHHHHHH---TTC------------------------------------------------------
T ss_pred ccccchhhhhhhhhhccccc---CcccCCCcCCCCccccCCCceecC--CccceEEeeCCCCCcc-h-----hhHhhcCc
Confidence 34678899999988764321 223345643 34567899888863 5677777766665542 1 12233444
Q ss_pred CCCCCCCCCcCccCCCCCCCcEEECccccccCcccCCCCCCCceeecccccccccccCchhhhcccceEEeccCccCCCC
Q 001384 110 LSRNTFSGSIPDDLSSCRSLKYLNLSHNILSGDLNLSGLRSLEILDLSVNRIHGEISFSFPAICEKLVVANLSLNNLTGR 189 (1088)
Q Consensus 110 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 189 (1088)
|+.|.|++ ++++.|.+ . .
T Consensus 198 Ls~~~i~~------------------------------------~~~~~n~~-------------------------~-~ 215 (727)
T 4b8c_D 198 LSQYSIDE------------------------------------DDDIENRM-------------------------V-M 215 (727)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCcccccC------------------------------------ccccccce-------------------------e-c
Confidence 44444431 11222222 1 3
Q ss_pred CCccccCCCCCcEEEccCccccccccccCcccceecccCcccccccccccccCCCccCEEEcCCCcccccCcccccCCCC
Q 001384 190 IDTCFDGCLNLRYLDLSSNNFRGNIWNGLAQLVEFSVSENVLSGVVSSSVFKENCSLEIFDLSENEFIGDFPGEVSNCRN 269 (1088)
Q Consensus 190 ~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 269 (1088)
.+..+..+++|+.|+|++|++. . ++...| .+++|++|+|++|.++ .+|..|.++++
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~-~---------------------l~~~~~-~l~~L~~L~Ls~N~l~-~lp~~~~~l~~ 271 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIF-N---------------------ISANIF-KYDFLTRLYLNGNSLT-ELPAEIKNLSN 271 (727)
T ss_dssp ------CCCCCCEEECTTSCCS-C---------------------CCGGGG-GCCSCSCCBCTTSCCS-CCCGGGGGGTT
T ss_pred ChhhhccCCCCcEEECCCCCCC-C---------------------CChhhc-CCCCCCEEEeeCCcCc-ccChhhhCCCC
Confidence 3444556666666666666654 1 111122 3456777777777777 77888888888
Q ss_pred CcEEEccCccccCCCccccCCCCCCCEEeCCCCcCCccCcccccCCCCCcEEEcCCCcCCCchhHhhhc
Q 001384 270 LVVLNLFGNNFSGPIPAEIGSISGLEALFLGKNNFLSVIPESLLNLSKLEVLDLSSNNFGGEVQKIFGR 338 (1088)
Q Consensus 270 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~ 338 (1088)
|++|+|++|+|+ .+|..|+.+++|++|+|++|.|+ .+|..|+++++|++|+|++|.|++.+|..+..
T Consensus 272 L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 338 (727)
T 4b8c_D 272 LRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTE 338 (727)
T ss_dssp CCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHH
T ss_pred CCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhh
Confidence 888999888888 77888888888999999888886 46778888888999999999888888887754
No 360
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.74 E-value=6.5e-18 Score=178.11 Aligned_cols=157 Identities=24% Similarity=0.269 Sum_probs=134.5
Q ss_pred CEEeCCCCcCCccCcccccCCCCCcEEEcCCCcCCCchhHhhhcccccceeecCcCcccCCCCCccccCCCCcCEEEccC
Q 001384 295 EALFLGKNNFLSVIPESLLNLSKLEVLDLSSNNFGGEVQKIFGRFTQVKILALHSNSYIDGMNSSGILKLPNISRLDLSH 374 (1088)
Q Consensus 295 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~ 374 (1088)
+.+++++|.++. +|..+. ..+++|+|++|++++..+ ...|..+++|++|+|++
T Consensus 14 ~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~------------------------~~~~~~l~~L~~L~L~~ 66 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEA------------------------TGIFKKLPQLRKINFSN 66 (220)
T ss_dssp TEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECC------------------------CCCGGGCTTCCEEECCS
T ss_pred CEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCc------------------------hhhhccCCCCCEEECCC
Confidence 578888888876 566554 356788888888876533 22345678899999999
Q ss_pred CccCCCCCccccCCcCcceeeccccccCCcCCcccCCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEccccccccCCC
Q 001384 375 NNFTGPLPVEISQMRSLKFLILAHNRFNGSIPAVYGNMPNLQTLDLSFNELTGPIPPSIGNLTSLLWLMLANNSLSGEIP 454 (1088)
Q Consensus 375 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 454 (1088)
|++++..+..|..+++|++|+|++|++++..|..|..+++|++|+|++|+|++..|..+.++++|++|+|++|++++..|
T Consensus 67 N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 146 (220)
T 2v70_A 67 NKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP 146 (220)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCT
T ss_pred CcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECH
Confidence 99997777789999999999999999998888889999999999999999998889999999999999999999998889
Q ss_pred ccccCCCCCCeEEccCCcCccCCC
Q 001384 455 GEIGNCTSLLWLNLSNNKLSGNIP 478 (1088)
Q Consensus 455 ~~l~~l~~L~~L~L~~N~l~g~ip 478 (1088)
..|..+++|+.|+|++|++++..+
T Consensus 147 ~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 147 GAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp TTTTTCTTCCEEECCSCCEECSGG
T ss_pred HHhcCCCCCCEEEecCcCCcCCCc
Confidence 999999999999999999997655
No 361
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.74 E-value=4.5e-18 Score=194.04 Aligned_cols=175 Identities=26% Similarity=0.303 Sum_probs=110.0
Q ss_pred EEEccCccccCCCccccCCCCCCCEEeCCCCcCCccCccccc-CCCCCcEEEcCCCcCCCchhHhhhcccccceeecCcC
Q 001384 272 VLNLFGNNFSGPIPAEIGSISGLEALFLGKNNFLSVIPESLL-NLSKLEVLDLSSNNFGGEVQKIFGRFTQVKILALHSN 350 (1088)
Q Consensus 272 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n 350 (1088)
.+++++|+++ .+|..+. ..++.|+|++|++++..+..+. ++++|++|+|++|+|++..+..|
T Consensus 22 ~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~-------------- 84 (361)
T 2xot_A 22 ILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAF-------------- 84 (361)
T ss_dssp EEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTT--------------
T ss_pred EEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhc--------------
Confidence 4444444444 3333332 2345555555555554444454 55555666666555554433332
Q ss_pred cccCCCCCccccCCCCcCEEEccCCccCCCCCccccCCcCcceeeccccccCCcCCcccCCCCCCcEEEccCCcCCCCCC
Q 001384 351 SYIDGMNSSGILKLPNISRLDLSHNNFTGPLPVEISQMRSLKFLILAHNRFNGSIPAVYGNMPNLQTLDLSFNELTGPIP 430 (1088)
Q Consensus 351 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 430 (1088)
..+++|++|+|++|++++..+..|..+++|+.|+|++|+|++..|..|..+++|+.|+|++|+|++ +|
T Consensus 85 -----------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~ 152 (361)
T 2xot_A 85 -----------VPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FP 152 (361)
T ss_dssp -----------TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS-CC
T ss_pred -----------cCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe-eC
Confidence 234455556666666654445566677777777777777776667777888888888888888884 55
Q ss_pred ccc----cCCCCCcEEEccccccccCCCccccCCCC--CCeEEccCCcCcc
Q 001384 431 PSI----GNLTSLLWLMLANNSLSGEIPGEIGNCTS--LLWLNLSNNKLSG 475 (1088)
Q Consensus 431 ~~~----~~l~~L~~L~L~~N~l~~~~p~~l~~l~~--L~~L~L~~N~l~g 475 (1088)
..+ ..+++|++|+|++|+|++..+..+..++. |+.|+|++|++.+
T Consensus 153 ~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 153 VELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp GGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred HHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence 443 56888888888888888554566777776 4889999999985
No 362
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.74 E-value=1.5e-17 Score=175.38 Aligned_cols=113 Identities=23% Similarity=0.291 Sum_probs=84.2
Q ss_pred CCCCcCEEEccCCccCCCCCccccCCcCcceeeccccccCCcCCcccCCCCCCcEEEccCCcCCCCCCccccCCCCCcEE
Q 001384 363 KLPNISRLDLSHNNFTGPLPVEISQMRSLKFLILAHNRFNGSIPAVYGNMPNLQTLDLSFNELTGPIPPSIGNLTSLLWL 442 (1088)
Q Consensus 363 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 442 (1088)
.+++|++|+|++|++++..|..|.++++|++|+|++|+|++..+..|..+++|++|+|++|+|++..|..+.++++|++|
T Consensus 54 ~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 133 (220)
T 2v9t_B 54 PYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLL 133 (220)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEE
Confidence 44555566666666665556667777777777777777775555556778888888888888887777778888888888
Q ss_pred EccccccccCCCccccCCCCCCeEEccCCcCcc
Q 001384 443 MLANNSLSGEIPGEIGNCTSLLWLNLSNNKLSG 475 (1088)
Q Consensus 443 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g 475 (1088)
+|++|++++..+..+..+++|++|+|++|++.+
T Consensus 134 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 134 SLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 888888886666678888888888888888875
No 363
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.73 E-value=4.4e-20 Score=221.92 Aligned_cols=217 Identities=16% Similarity=0.138 Sum_probs=140.0
Q ss_pred CCCCCCcEEECccccccCcc-cCCCCCCCceeecccccccccccCchhhhcccceEEeccCccCCCCCCccccCCCCCcE
Q 001384 124 SSCRSLKYLNLSHNILSGDL-NLSGLRSLEILDLSVNRIHGEISFSFPAICEKLVVANLSLNNLTGRIDTCFDGCLNLRY 202 (1088)
Q Consensus 124 ~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 202 (1088)
..+++|+.|+|++|.++... .+++|++|++|++++|......+. .+..+++.+.+|..++.+++|+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~------------ll~~~~~~~~~~~~l~~l~~L~~ 413 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIIL------------LMRALDPLLYEKETLQYFSTLKA 413 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH------------HHHHHCTGGGHHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHH------------HHHhcccccCCHHHHHHHHhccc
Confidence 45666666666666665432 366666677777655542111110 01122345566777778888888
Q ss_pred EE-ccCccccccccccCcccceecccCcccccccccccccCCCccCEEEcCCCcccccCcccccCCCCCcEEEccCcccc
Q 001384 203 LD-LSSNNFRGNIWNGLAQLVEFSVSENVLSGVVSSSVFKENCSLEIFDLSENEFIGDFPGEVSNCRNLVVLNLFGNNFS 281 (1088)
Q Consensus 203 L~-Ls~N~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~ 281 (1088)
|+ ++.|.+ ..|+.+.+++|.++.... ..|+.|+|++|++++ +|. ++++++|+.|+|++|+|+
T Consensus 414 L~~l~~n~~--------~~L~~l~l~~n~i~~l~~-------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~ 476 (567)
T 1dce_A 414 VDPMRAAYL--------DDLRSKFLLENSVLKMEY-------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR 476 (567)
T ss_dssp HCGGGHHHH--------HHHHHHHHHHHHHHHHHH-------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC
T ss_pred Ccchhhccc--------chhhhhhhhcccccccCc-------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc
Confidence 87 666654 245556666666654322 147777777777774 555 777777777777777777
Q ss_pred CCCccccCCCCCCCEEeCCCCcCCccCcccccCCCCCcEEEcCCCcCCCch-hHhhhcccccceeecCcCcccCCCCC--
Q 001384 282 GPIPAEIGSISGLEALFLGKNNFLSVIPESLLNLSKLEVLDLSSNNFGGEV-QKIFGRFTQVKILALHSNSYIDGMNS-- 358 (1088)
Q Consensus 282 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~n~~~~~~~~-- 358 (1088)
.+|..|+.+++|+.|+|++|++++ +| .++++++|++|+|++|+|++.. |..|+.+++|+.|++++|.+......
T Consensus 477 -~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~ 553 (567)
T 1dce_A 477 -ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQE 553 (567)
T ss_dssp -CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTT
T ss_pred -ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHH
Confidence 667777777777777777777776 45 6777777777777777777776 77777777777777777776543321
Q ss_pred ccccCCCCcCEEEc
Q 001384 359 SGILKLPNISRLDL 372 (1088)
Q Consensus 359 ~~~~~l~~L~~L~L 372 (1088)
..+..+++|+.|++
T Consensus 554 ~l~~~lp~L~~L~l 567 (567)
T 1dce_A 554 RLAEMLPSVSSILT 567 (567)
T ss_dssp HHHHHCTTCSEEEC
T ss_pred HHHHHCcccCccCC
Confidence 12334788888864
No 364
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.73 E-value=2.4e-17 Score=173.78 Aligned_cols=134 Identities=22% Similarity=0.249 Sum_probs=81.1
Q ss_pred CCEEeCCCCcCCccCc-ccccCCCCCcEEEcCCCcCCCchhHhhhcccccceeecCcCcccCCCCCccccCCCCcCEEEc
Q 001384 294 LEALFLGKNNFLSVIP-ESLLNLSKLEVLDLSSNNFGGEVQKIFGRFTQVKILALHSNSYIDGMNSSGILKLPNISRLDL 372 (1088)
Q Consensus 294 L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L 372 (1088)
++.|+|++|++++..| ..|..+++|++|+|++|+|++..+..| .++++|++|+|
T Consensus 34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~-------------------------~~l~~L~~L~L 88 (220)
T 2v70_A 34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAF-------------------------EGASGVNEILL 88 (220)
T ss_dssp CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTT-------------------------TTCTTCCEEEC
T ss_pred CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHh-------------------------CCCCCCCEEEC
Confidence 3455555555544432 234555555555555555554433322 23445555555
Q ss_pred cCCccCCCCCccccCCcCcceeeccccccCCcCCcccCCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEccccccccC
Q 001384 373 SHNNFTGPLPVEISQMRSLKFLILAHNRFNGSIPAVYGNMPNLQTLDLSFNELTGPIPPSIGNLTSLLWLMLANNSLSGE 452 (1088)
Q Consensus 373 s~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 452 (1088)
++|++++..|..|..+++|++|+|++|+|++..|..|..+++|++|+|++|++++..|..+..+++|++|+|++|.+.+.
T Consensus 89 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 89 TSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp CSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred CCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 66666555555566666677777777777666666677777777777777777766666777777777777777777653
No 365
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.73 E-value=3.7e-17 Score=173.54 Aligned_cols=115 Identities=26% Similarity=0.278 Sum_probs=86.3
Q ss_pred CCCCcCEEEccCCccCCCCCccccCCcCcceeeccccccCCcCCcccCCCCCCcEEEccCCcCCCCCCccccCCCCCcEE
Q 001384 363 KLPNISRLDLSHNNFTGPLPVEISQMRSLKFLILAHNRFNGSIPAVYGNMPNLQTLDLSFNELTGPIPPSIGNLTSLLWL 442 (1088)
Q Consensus 363 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 442 (1088)
.+++|++|+|++|++++..+..|..+++|+.|+|++|+|++..+..|..+++|++|+|++|+|+ .+|..+.++++|++|
T Consensus 62 ~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L 140 (229)
T 3e6j_A 62 SLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHL 140 (229)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEE
T ss_pred CccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEE
Confidence 3445555555555555444455667777777777777777666666778888888888888888 788888888888888
Q ss_pred EccccccccCCCccccCCCCCCeEEccCCcCccCCC
Q 001384 443 MLANNSLSGEIPGEIGNCTSLLWLNLSNNKLSGNIP 478 (1088)
Q Consensus 443 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip 478 (1088)
+|++|+|++..+..+..+++|+.|+|++|++++..+
T Consensus 141 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 141 ALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred ECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 888888886556678888899999999998886544
No 366
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.72 E-value=3.2e-17 Score=172.72 Aligned_cols=86 Identities=23% Similarity=0.245 Sum_probs=47.2
Q ss_pred CCcCEEEccCCccCCCCCccccCCcCcceeeccccccCCcCCcccCCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEc
Q 001384 365 PNISRLDLSHNNFTGPLPVEISQMRSLKFLILAHNRFNGSIPAVYGNMPNLQTLDLSFNELTGPIPPSIGNLTSLLWLML 444 (1088)
Q Consensus 365 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 444 (1088)
++|++|+|++|++++..+..|..+++|++|+|++|++++..|..|..+++|++|+|++|+|++..+..+..+++|++|+|
T Consensus 80 ~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 159 (220)
T 2v9t_B 80 RSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHL 159 (220)
T ss_dssp SSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEe
Confidence 34444444444444333333455555555555555555555555666666666666666666544445566666666666
Q ss_pred cccccc
Q 001384 445 ANNSLS 450 (1088)
Q Consensus 445 ~~N~l~ 450 (1088)
++|.+.
T Consensus 160 ~~N~~~ 165 (220)
T 2v9t_B 160 AQNPFI 165 (220)
T ss_dssp CSSCEE
T ss_pred CCCCcC
Confidence 666665
No 367
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.72 E-value=1.2e-17 Score=190.61 Aligned_cols=178 Identities=25% Similarity=0.284 Sum_probs=138.1
Q ss_pred cCEEEcCCCcccccCcccccCCCCCcEEEccCccccCCCccccC-CCCCCCEEeCCCCcCCccCcccccCCCCCcEEEcC
Q 001384 246 LEIFDLSENEFIGDFPGEVSNCRNLVVLNLFGNNFSGPIPAEIG-SISGLEALFLGKNNFLSVIPESLLNLSKLEVLDLS 324 (1088)
Q Consensus 246 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~ 324 (1088)
-+.+++++++++ .+|..+. +.++.|+|++|+|++..+..+. .+++|+.|+|++|+|++..+..|.++++|++|+|+
T Consensus 20 ~~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 20 SNILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TTEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 357888888877 4666554 4588999999999877777777 89999999999999998888889999999999999
Q ss_pred CCcCCCchhHhhhcccccceeecCcCcccCCCCCccccCCCCcCEEEccCCccCCCCCccccCCcCcceeeccccccCCc
Q 001384 325 SNNFGGEVQKIFGRFTQVKILALHSNSYIDGMNSSGILKLPNISRLDLSHNNFTGPLPVEISQMRSLKFLILAHNRFNGS 404 (1088)
Q Consensus 325 ~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 404 (1088)
+|+|++..+..|. .+++|+.|+|++|++++..|..|..+++|+.|+|++|+|++.
T Consensus 97 ~N~l~~~~~~~~~-------------------------~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l 151 (361)
T 2xot_A 97 SNHLHTLDEFLFS-------------------------DLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRF 151 (361)
T ss_dssp SSCCCEECTTTTT-------------------------TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSC
T ss_pred CCcCCcCCHHHhC-------------------------CCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCee
Confidence 9998866555443 556777777777777766677888888888888888888853
Q ss_pred CCccc---CCCCCCcEEEccCCcCCCCCCccccCCCC--CcEEEcccccccc
Q 001384 405 IPAVY---GNMPNLQTLDLSFNELTGPIPPSIGNLTS--LLWLMLANNSLSG 451 (1088)
Q Consensus 405 ~p~~~---~~l~~L~~L~L~~N~l~~~~p~~~~~l~~--L~~L~L~~N~l~~ 451 (1088)
.+..| ..+++|+.|+|++|+|++..+..+..++. |+.|+|++|.+..
T Consensus 152 ~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 152 PVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred CHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence 33444 56888999999999998544466777776 4889999998873
No 368
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.71 E-value=7e-17 Score=171.39 Aligned_cols=87 Identities=24% Similarity=0.302 Sum_probs=48.0
Q ss_pred CCCcCEEEccCCccCCCCCccccCCcCcceeeccccccCCcCCcccCCCCCCcEEEccCCcCCCCCCccccCCCCCcEEE
Q 001384 364 LPNISRLDLSHNNFTGPLPVEISQMRSLKFLILAHNRFNGSIPAVYGNMPNLQTLDLSFNELTGPIPPSIGNLTSLLWLM 443 (1088)
Q Consensus 364 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 443 (1088)
+++|+.|+|++|++++..+..|..+++|++|+|++|+|+ .+|..+..+++|++|+|++|+|++..+..+..+++|++|+
T Consensus 87 l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 165 (229)
T 3e6j_A 87 LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAY 165 (229)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEE
Confidence 344444444444444433444455555555555555555 4555555566666666666666644444455666666666
Q ss_pred cccccccc
Q 001384 444 LANNSLSG 451 (1088)
Q Consensus 444 L~~N~l~~ 451 (1088)
|++|.+.+
T Consensus 166 l~~N~~~c 173 (229)
T 3e6j_A 166 LFGNPWDC 173 (229)
T ss_dssp CTTSCBCT
T ss_pred eeCCCccC
Confidence 66666654
No 369
>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*
Probab=99.71 E-value=1.2e-17 Score=180.60 Aligned_cols=137 Identities=21% Similarity=0.206 Sum_probs=105.1
Q ss_pred CCCccceecccCceEEEEEEe-CCCcE--EEEEEccccCcc------------------------chHHHHHHHHHHhCC
Q 001384 806 KFSEDRIIGKGGFGTVYRGVL-PDGRE--VAVKKLQREGLE------------------------GEREFRAEMEVLSGN 858 (1088)
Q Consensus 806 ~~~~~~~LG~G~~g~Vy~~~~-~~~~~--vavK~~~~~~~~------------------------~~~~~~~E~~~l~~~ 858 (1088)
-|++.+.||+|+||.||+|.+ .+|+. ||||+++..... ....+.+|++.+.+
T Consensus 48 ~~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~- 126 (258)
T 1zth_A 48 ITAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLER- 126 (258)
T ss_dssp EEEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHH-
T ss_pred chhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHH-
Confidence 367789999999999999998 67888 999987543211 01257788888876
Q ss_pred CCCCCCCce--eEEeeEEecCCeEEEEEEecCC-C----CHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHH-hcCCCCeE
Q 001384 859 GFGWPHPNL--VTLYGWCLDGSEKILVYEYMEG-G----SLEDIISDRTRLTWRRRLDIAIDVARALVFLH-HECYPPIV 930 (1088)
Q Consensus 859 ~~~l~h~ni--v~l~~~~~~~~~~~lv~e~~~~-g----sL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH-~~~~~~iv 930 (1088)
+.|+++ ..++++ ...++||||+.+ | +|.++... .++.++..++.|++.||+||| +. +|+
T Consensus 127 ---l~~~~i~~p~~~~~----~~~~lVmE~~g~~g~~~~~L~~~~~~---~~~~~~~~i~~qi~~~l~~lH~~~---giv 193 (258)
T 1zth_A 127 ---AKEAGVSVPQPYTY----MKNVLLMEFIGEDELPAPTLVELGRE---LKELDVEGIFNDVVENVKRLYQEA---ELV 193 (258)
T ss_dssp ---HHHTTCCCCCEEEE----ETTEEEEECCEETTEECCBHHHHGGG---GGGSCHHHHHHHHHHHHHHHHHTS---CEE
T ss_pred ---HHhCCCCCCeEEEc----CCCEEEEEecCCCCCccccHHHHhhc---cChHHHHHHHHHHHHHHHHHHHHC---CEE
Confidence 345432 333332 356899999942 4 77776543 245677899999999999999 87 999
Q ss_pred ecCCCCCCEEEcCCCCEEEeecccceee
Q 001384 931 HRDVKASNVLLDKEGKALVTDFGLARVV 958 (1088)
Q Consensus 931 H~DLkp~NIll~~~~~~kl~Dfg~a~~~ 958 (1088)
||||||+|||++. .++|+|||+|...
T Consensus 194 HrDlkp~NILl~~--~~~liDFG~a~~~ 219 (258)
T 1zth_A 194 HADLSEYNIMYID--KVYFIDMGQAVTL 219 (258)
T ss_dssp CSSCSTTSEEESS--SEEECCCTTCEET
T ss_pred eCCCCHHHEEEcC--cEEEEECcccccC
Confidence 9999999999988 9999999999765
No 370
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.69 E-value=3.8e-17 Score=169.20 Aligned_cols=154 Identities=20% Similarity=0.285 Sum_probs=124.9
Q ss_pred CCCCCCCEEeCCCCcCCccCcccccCCCCCcEEEcCCCcCCCchhHhhhcccccceeecCcCcccCCCCCccccCCCCcC
Q 001384 289 GSISGLEALFLGKNNFLSVIPESLLNLSKLEVLDLSSNNFGGEVQKIFGRFTQVKILALHSNSYIDGMNSSGILKLPNIS 368 (1088)
Q Consensus 289 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~ 368 (1088)
+.+++|+.|++++|.+.. +| .+..+++|++|++++|.++.. ..+..+++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~n~~~~~---------------------------~~l~~l~~L~ 91 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTD-LT-GIEYAHNIKDLTINNIHATNY---------------------------NPISGLSNLE 91 (197)
T ss_dssp HHHHTCCEEEEESSCCSC-CT-TGGGCTTCSEEEEESCCCSCC---------------------------GGGTTCTTCC
T ss_pred hhcCCccEEeccCCCccC-hH-HHhcCCCCCEEEccCCCCCcc---------------------------hhhhcCCCCC
Confidence 556677777777777764 34 577777777777777755422 2355788999
Q ss_pred EEEccCCccCCCCCccccCCcCcceeeccccccCCcCCcccCCCCCCcEEEccCCc-CCCCCCccccCCCCCcEEEcccc
Q 001384 369 RLDLSHNNFTGPLPVEISQMRSLKFLILAHNRFNGSIPAVYGNMPNLQTLDLSFNE-LTGPIPPSIGNLTSLLWLMLANN 447 (1088)
Q Consensus 369 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~L~~N 447 (1088)
+|++++|++++..|..++.+++|++|++++|++++..|..++.+++|++|++++|+ ++ .+| .+..+++|++|++++|
T Consensus 92 ~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n 169 (197)
T 4ezg_A 92 RLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFD 169 (197)
T ss_dssp EEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTB
T ss_pred EEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCC
Confidence 99999999998788899999999999999999998888999999999999999998 66 566 6899999999999999
Q ss_pred ccccCCCccccCCCCCCeEEccCCcCcc
Q 001384 448 SLSGEIPGEIGNCTSLLWLNLSNNKLSG 475 (1088)
Q Consensus 448 ~l~~~~p~~l~~l~~L~~L~L~~N~l~g 475 (1088)
++++ ++ .+..+++|++|++++|++.+
T Consensus 170 ~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 170 GVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred CCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 9985 55 78999999999999999864
No 371
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.69 E-value=6.1e-19 Score=212.00 Aligned_cols=190 Identities=25% Similarity=0.319 Sum_probs=130.5
Q ss_pred cCCCCCcEEEccCccccCCCccccCCCCCCCEEeCCCCc-------------CCccCcccccCCCCCcEEE-cCCCcCCC
Q 001384 265 SNCRNLVVLNLFGNNFSGPIPAEIGSISGLEALFLGKNN-------------FLSVIPESLLNLSKLEVLD-LSSNNFGG 330 (1088)
Q Consensus 265 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~-------------l~~~~p~~l~~l~~L~~L~-L~~N~l~~ 330 (1088)
..+++|+.|+|++|+++ .+|..++.+++|+.|++++|. +.+.+|..++++++|+.|+ ++.|.+
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~-- 422 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL-- 422 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH--
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc--
Confidence 34455555555555555 455555555555555554443 2333444444444444444 333322
Q ss_pred chhHhhhcccccceeecCcCcccCCCCCccccCCCCcCEEEccCCccCCCCCccccCCcCcceeeccccccCCcCCcccC
Q 001384 331 EVQKIFGRFTQVKILALHSNSYIDGMNSSGILKLPNISRLDLSHNNFTGPLPVEISQMRSLKFLILAHNRFNGSIPAVYG 410 (1088)
Q Consensus 331 ~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~ 410 (1088)
..|+.+.+..|.+.. + ....|+.|+|++|.+++ +|. ++.+++|+.|+|++|+|+ .+|..++
T Consensus 423 ---------~~L~~l~l~~n~i~~------l-~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~ 483 (567)
T 1dce_A 423 ---------DDLRSKFLLENSVLK------M-EYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALA 483 (567)
T ss_dssp ---------HHHHHHHHHHHHHHH------H-HHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGG
T ss_pred ---------chhhhhhhhcccccc------c-CccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhh
Confidence 112222222332211 0 01258899999999985 676 899999999999999999 8898999
Q ss_pred CCCCCcEEEccCCcCCCCCCccccCCCCCcEEEccccccccCC-CccccCCCCCCeEEccCCcCccCCC
Q 001384 411 NMPNLQTLDLSFNELTGPIPPSIGNLTSLLWLMLANNSLSGEI-PGEIGNCTSLLWLNLSNNKLSGNIP 478 (1088)
Q Consensus 411 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~L~~N~l~g~ip 478 (1088)
.+++|+.|+|++|+|++ +| .++++++|++|+|++|+|++.. |..++.+++|+.|+|++|++++..|
T Consensus 484 ~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 484 ALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp GCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred cCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 99999999999999995 77 8899999999999999999766 8999999999999999999986544
No 372
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.68 E-value=2.1e-17 Score=179.25 Aligned_cols=80 Identities=25% Similarity=0.385 Sum_probs=38.7
Q ss_pred cCcceeeccccccCCcCCcccCCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEccccccccCCCccccCCCCCCeEEc
Q 001384 389 RSLKFLILAHNRFNGSIPAVYGNMPNLQTLDLSFNELTGPIPPSIGNLTSLLWLMLANNSLSGEIPGEIGNCTSLLWLNL 468 (1088)
Q Consensus 389 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 468 (1088)
++|+.|++++|++++ ++ .+..+++|+.|++++|++++ +| .++.+++|++|+|++|++++. ..+..+++|+.|++
T Consensus 106 ~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l 179 (263)
T 1xeu_A 106 ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDL 179 (263)
T ss_dssp SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEE
T ss_pred CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeC
Confidence 444444444444442 22 24445555555555555543 22 344555555555555555532 34455555555555
Q ss_pred cCCcCc
Q 001384 469 SNNKLS 474 (1088)
Q Consensus 469 ~~N~l~ 474 (1088)
++|+++
T Consensus 180 ~~N~~~ 185 (263)
T 1xeu_A 180 TGQKCV 185 (263)
T ss_dssp EEEEEE
T ss_pred CCCccc
Confidence 555554
No 373
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.67 E-value=1.5e-16 Score=164.76 Aligned_cols=152 Identities=19% Similarity=0.230 Sum_probs=103.4
Q ss_pred CCCccCEEEcCCCcccccCcccccCCCCCcEEEccCccccCCCccccCCCCCCCEEeCCCCcCCccCcccccCCCCCcEE
Q 001384 242 ENCSLEIFDLSENEFIGDFPGEVSNCRNLVVLNLFGNNFSGPIPAEIGSISGLEALFLGKNNFLSVIPESLLNLSKLEVL 321 (1088)
Q Consensus 242 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 321 (1088)
.+++|++|++++|+++ .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|.+++..|..++.+++|++|
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 3457788888888877 555 5778888888888888665 23477888888888888888887777888888888888
Q ss_pred EcCCCcCCCchhHhhhcccccceeecCcCcccCCCCCccccCCCCcCEEEccCCc-cCCCCCccccCCcCcceeeccccc
Q 001384 322 DLSSNNFGGEVQKIFGRFTQVKILALHSNSYIDGMNSSGILKLPNISRLDLSHNN-FTGPLPVEISQMRSLKFLILAHNR 400 (1088)
Q Consensus 322 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~L~~N~ 400 (1088)
+|++|.+++..+..++.++ +|++|+|++|. ++ .+| .+..+++|+.|++++|+
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~-------------------------~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~ 170 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLP-------------------------KVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDG 170 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCS-------------------------SCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBC
T ss_pred EecCCccCcHhHHHHhhCC-------------------------CCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCC
Confidence 8888888877676666444 44555555554 33 333 45556666666666666
Q ss_pred cCCcCCcccCCCCCCcEEEccCCcCC
Q 001384 401 FNGSIPAVYGNMPNLQTLDLSFNELT 426 (1088)
Q Consensus 401 l~~~~p~~~~~l~~L~~L~L~~N~l~ 426 (1088)
+++ ++ .+..+++|+.|++++|++.
T Consensus 171 i~~-~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 171 VHD-YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CCC-CT-TGGGCSSCCEEEECBC---
T ss_pred CcC-hH-HhccCCCCCEEEeeCcccC
Confidence 653 33 4556666666666666654
No 374
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.67 E-value=5.9e-17 Score=175.77 Aligned_cols=170 Identities=19% Similarity=0.259 Sum_probs=117.4
Q ss_pred CcccceecccCcccccccccccccCCCccCEEEcCCCcccccCcccccCCCCCcEEEccCccccCCCccccCCCCCCCEE
Q 001384 218 LAQLVEFSVSENVLSGVVSSSVFKENCSLEIFDLSENEFIGDFPGEVSNCRNLVVLNLFGNNFSGPIPAEIGSISGLEAL 297 (1088)
Q Consensus 218 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 297 (1088)
+.++..+++++|.+++.. .+..+++|++|++++|+++ .+| .+..+++|++|+|++|++++..+ +..+++|+.|
T Consensus 18 l~~l~~l~l~~~~i~~~~---~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV---SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE---CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHhcCCCccccc---chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 344555555555555433 3555667778888888776 344 57777888888888888875433 7778888888
Q ss_pred eCCCCcCCccCcccccCCCCCcEEEcCCCcCCCchhHhhhcccccceeecCcCcccCCCCCccccCCCCcCEEEccCCcc
Q 001384 298 FLGKNNFLSVIPESLLNLSKLEVLDLSSNNFGGEVQKIFGRFTQVKILALHSNSYIDGMNSSGILKLPNISRLDLSHNNF 377 (1088)
Q Consensus 298 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~N~l 377 (1088)
+|++|++++. |. +.. ++|++|+|++|++++.. .+..+++|+.|+|++|++
T Consensus 91 ~L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~~---------------------------~l~~l~~L~~L~Ls~N~i 140 (263)
T 1xeu_A 91 SVNRNRLKNL-NG-IPS-ACLSRLFLDNNELRDTD---------------------------SLIHLKNLEILSIRNNKL 140 (263)
T ss_dssp ECCSSCCSCC-TT-CCC-SSCCEEECCSSCCSBSG---------------------------GGTTCTTCCEEECTTSCC
T ss_pred ECCCCccCCc-Cc-ccc-CcccEEEccCCccCCCh---------------------------hhcCcccccEEECCCCcC
Confidence 8888877763 33 222 77888888887776531 234566777777777877
Q ss_pred CCCCCccccCCcCcceeeccccccCCcCCcccCCCCCCcEEEccCCcCCCC
Q 001384 378 TGPLPVEISQMRSLKFLILAHNRFNGSIPAVYGNMPNLQTLDLSFNELTGP 428 (1088)
Q Consensus 378 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 428 (1088)
++. | .+..+++|+.|++++|++++. ..+..+++|+.|++++|++++.
T Consensus 141 ~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 141 KSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred CCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 753 3 577788888888888888754 5677888888888888888753
No 375
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.64 E-value=1.6e-16 Score=178.92 Aligned_cols=260 Identities=17% Similarity=0.175 Sum_probs=161.9
Q ss_pred CCCCcEEEccCcccc--ccccccCcccceecccCcccccccccccccC--------CCccCEEEcCCCcccccCcccccC
Q 001384 197 CLNLRYLDLSSNNFR--GNIWNGLAQLVEFSVSENVLSGVVSSSVFKE--------NCSLEIFDLSENEFIGDFPGEVSN 266 (1088)
Q Consensus 197 l~~L~~L~Ls~N~l~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~--------l~~L~~L~Ls~n~l~~~~p~~l~~ 266 (1088)
+++|++|||++|++. ......++.+..+.+..| .++...|.+ +++|+.|+|.+ +++..-+.+|.+
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~----~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~ 122 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN----FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKG 122 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT----EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTT
T ss_pred hccCeEEecCcceeEEecCcccccccccccccccc----ccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhc
Confidence 555666666666655 111112222233333333 244556666 77777777777 666666667777
Q ss_pred CCCCcEEEccCccccCCCccccCCCCCCCEEeCCCCc----CCccCcccccCCCCCc-EEEcCCCcCCCchhH-hhh---
Q 001384 267 CRNLVVLNLFGNNFSGPIPAEIGSISGLEALFLGKNN----FLSVIPESLLNLSKLE-VLDLSSNNFGGEVQK-IFG--- 337 (1088)
Q Consensus 267 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~----l~~~~p~~l~~l~~L~-~L~L~~N~l~~~~~~-~~~--- 337 (1088)
+++|+.|++++|.+..+.+.+|..+.++..+.+..+. ........|.++.+|+ .+.+.... .++. .+.
T Consensus 123 ~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~~ 199 (329)
T 3sb4_A 123 CDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMG---KLEDEIMKAGL 199 (329)
T ss_dssp CTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTC---CHHHHHHHTTC
T ss_pred CcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCC---cHHHHHhhccc
Confidence 7777777777777765666667666666666655421 1222334455566666 45554321 2222 221
Q ss_pred cccccceeecCcCcccCCCCCccc-cCCCCcCEEEccCCccCCCCCccccCCcCcceeeccccccCCcCCcccCCCCCCc
Q 001384 338 RFTQVKILALHSNSYIDGMNSSGI-LKLPNISRLDLSHNNFTGPLPVEISQMRSLKFLILAHNRFNGSIPAVYGNMPNLQ 416 (1088)
Q Consensus 338 ~l~~L~~L~L~~n~~~~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 416 (1088)
...++..+.+.++-. ......+ ..+++|+.|+|++|+++...+..|.++++|+.|+|.+| ++...+.+|.++++|+
T Consensus 200 ~~~~~~~l~~~~~l~--~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~ 276 (329)
T 3sb4_A 200 QPRDINFLTIEGKLD--NADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLA 276 (329)
T ss_dssp CGGGCSEEEEEECCC--HHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred CccccceEEEeeeec--HHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhcc
Confidence 234444444443310 0001111 12678888999988888666667888888999999887 7756677888888898
Q ss_pred -EEEccCCcCCCCCCccccCCCCCcEEEccccccccCCCccccCCCCCCeEEc
Q 001384 417 -TLDLSFNELTGPIPPSIGNLTSLLWLMLANNSLSGEIPGEIGNCTSLLWLNL 468 (1088)
Q Consensus 417 -~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 468 (1088)
.+++.+ .++..-+..|.++++|+.|++++|+++...+..|.++++|+.++.
T Consensus 277 ~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 277 GTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 888888 676455677888889999998888888655668888888888764
No 376
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.62 E-value=1.2e-15 Score=157.10 Aligned_cols=114 Identities=25% Similarity=0.269 Sum_probs=104.9
Q ss_pred CcCEEEccCCccCCCCCc-cccCCcCcceeeccccccCCcCCcccCCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEc
Q 001384 366 NISRLDLSHNNFTGPLPV-EISQMRSLKFLILAHNRFNGSIPAVYGNMPNLQTLDLSFNELTGPIPPSIGNLTSLLWLML 444 (1088)
Q Consensus 366 ~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 444 (1088)
+|++|+|++|++++..+. .+..+++|++|+|++|+|++..|..|.++++|++|+|++|+|++..|..+.++++|++|+|
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 789999999999865554 4899999999999999999888999999999999999999999888888999999999999
Q ss_pred cccccccCCCccccCCCCCCeEEccCCcCccCCCc
Q 001384 445 ANNSLSGEIPGEIGNCTSLLWLNLSNNKLSGNIPP 479 (1088)
Q Consensus 445 ~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~ 479 (1088)
++|++++..|..+..+++|++|+|++|++++..+-
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 144 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL 144 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcc
Confidence 99999998899999999999999999999987653
No 377
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.61 E-value=7.5e-16 Score=173.29 Aligned_cols=283 Identities=14% Similarity=0.139 Sum_probs=172.2
Q ss_pred CCCCcEEECccccccC-cccCCC-CCCCceeeccccccc--ccccCchhhhcccceEEeccCccCCCCCCccccCCCCCc
Q 001384 126 CRSLKYLNLSHNILSG-DLNLSG-LRSLEILDLSVNRIH--GEISFSFPAICEKLVVANLSLNNLTGRIDTCFDGCLNLR 201 (1088)
Q Consensus 126 l~~L~~L~Ls~n~l~~-~~~l~~-l~~L~~L~Ls~N~l~--~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 201 (1088)
+.+|+.|.++++--.. ...+.. +++|++|||++|++. ......+. .++
T Consensus 24 ~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~----------------------------~~~ 75 (329)
T 3sb4_A 24 ANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYP----------------------------NGK 75 (329)
T ss_dssp HHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSG----------------------------GGC
T ss_pred hCceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCcccccc----------------------------ccc
Confidence 6678888888752111 112333 677888888888876 22211111 123
Q ss_pred EEEccCcccccccccc--------CcccceecccCcccccccccccccCCCccCEEEcCCCcccccCcccccCCCCCcEE
Q 001384 202 YLDLSSNNFRGNIWNG--------LAQLVEFSVSENVLSGVVSSSVFKENCSLEIFDLSENEFIGDFPGEVSNCRNLVVL 273 (1088)
Q Consensus 202 ~L~Ls~N~l~~~~~~~--------l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 273 (1088)
.+.+..|.+....+.+ +++|++|++.+ .++ .+...+|.++++|+.|++++|.+....+.+|.++.++..+
T Consensus 76 ~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l 153 (329)
T 3sb4_A 76 FYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFI 153 (329)
T ss_dssp CEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEE
T ss_pred cccccccccCHHHhcccccccccccCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEe
Confidence 3333333443333444 44555555544 333 4667788888888888888888877777888888877777
Q ss_pred EccCccc----cCCCccccCCCCCCC-EEeCCCCcCCccCcccc----cCCCCCcEEEcCCCcCCCchhHhhhcccccce
Q 001384 274 NLFGNNF----SGPIPAEIGSISGLE-ALFLGKNNFLSVIPESL----LNLSKLEVLDLSSNNFGGEVQKIFGRFTQVKI 344 (1088)
Q Consensus 274 ~L~~N~l----~~~~p~~~~~l~~L~-~L~L~~N~l~~~~p~~l----~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 344 (1088)
.+..+.. .......|.++..|+ .+.+.... .++..+ ....+++.+.+.++-...........+++|+.
T Consensus 154 ~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~ 230 (329)
T 3sb4_A 154 PLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVS 230 (329)
T ss_dssp CTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCE
T ss_pred cCcchhhhhccccccccccccccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeE
Confidence 7766332 223334555666666 45554322 122211 12345566666554222222222233666777
Q ss_pred eecCcCcccCCCCCccccCCCCcCEEEccCCccCCCCCccccCCcCcc-eeeccccccCCcCCcccCCCCCCcEEEccCC
Q 001384 345 LALHSNSYIDGMNSSGILKLPNISRLDLSHNNFTGPLPVEISQMRSLK-FLILAHNRFNGSIPAVYGNMPNLQTLDLSFN 423 (1088)
Q Consensus 345 L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~-~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 423 (1088)
+++.+|. +..+....|.++++|+.|+|++| ++...+..|.++++|+ .|++.+ .++...+.+|.++++|+.|++++|
T Consensus 231 l~L~~n~-i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n 307 (329)
T 3sb4_A 231 LDISKTN-ATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGD 307 (329)
T ss_dssp EECTTBC-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSS
T ss_pred EECCCCC-cceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCC
Confidence 7777665 44555666777778888888777 6655566778888888 888877 666556678888888888888888
Q ss_pred cCCCCCCccccCCCCCcEEEc
Q 001384 424 ELTGPIPPSIGNLTSLLWLML 444 (1088)
Q Consensus 424 ~l~~~~p~~~~~l~~L~~L~L 444 (1088)
+++..-+..|.++++|+.++.
T Consensus 308 ~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 308 KITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CCCEECTTTTCTTCCCCEEEC
T ss_pred ccCccchhhhcCCcchhhhcc
Confidence 888555557788888887763
No 378
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.59 E-value=1.7e-15 Score=155.89 Aligned_cols=64 Identities=22% Similarity=0.316 Sum_probs=34.1
Q ss_pred CCcCEEEccCCccCCCCCccccCCcCcceeeccccccCCcCCcccCCCCCCcEEEccCCcCCCC
Q 001384 365 PNISRLDLSHNNFTGPLPVEISQMRSLKFLILAHNRFNGSIPAVYGNMPNLQTLDLSFNELTGP 428 (1088)
Q Consensus 365 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 428 (1088)
++|++|+|++|++++..|..|..+++|++|+|++|++++..|..+..+++|++|+|++|++++.
T Consensus 78 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 78 SHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp TTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 3344444444444444444455555555555555555555555555566666666666665543
No 379
>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A
Probab=99.59 E-value=3.1e-16 Score=175.38 Aligned_cols=141 Identities=13% Similarity=0.179 Sum_probs=99.9
Q ss_pred HHcCCCCccceecccCceEEEEEEeCCCcEEEEEEccccCcc--------------chHHH--------HHHHHHHhCCC
Q 001384 802 KATGKFSEDRIIGKGGFGTVYRGVLPDGREVAVKKLQREGLE--------------GEREF--------RAEMEVLSGNG 859 (1088)
Q Consensus 802 ~~~~~~~~~~~LG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~--------------~~~~~--------~~E~~~l~~~~ 859 (1088)
....-|++.+.||+|+||.||+|.+.+|+.||||+++..... ....+ ..|...+.+
T Consensus 92 ~rg~iY~I~~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~r-- 169 (397)
T 4gyi_A 92 ARKDVYSVGSRIGVGKESDIMIVADEKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKA-- 169 (397)
T ss_dssp HTTSCSEEEEEEEECSSEEEEEEECTTCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HCCCEEEecCEeeeCCceEEEEEECCCCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHH--
Confidence 333449999999999999999999999999999987532110 01111 234444433
Q ss_pred CCCCCCce--eEEeeEEecCCeEEEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCC
Q 001384 860 FGWPHPNL--VTLYGWCLDGSEKILVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKAS 937 (1088)
Q Consensus 860 ~~l~h~ni--v~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~ 937 (1088)
+.+..+ ...+++ ...++||||++|++|.++.. ......++.|++.+|.|||+. |||||||||.
T Consensus 170 --L~~~gv~vp~p~~~----~~~~LVME~i~G~~L~~l~~------~~~~~~l~~qll~~l~~lH~~---gIVHrDLKp~ 234 (397)
T 4gyi_A 170 --LYEEGFPVPEPIAQ----SRHTIVMSLVDALPMRQVSS------VPDPASLYADLIALILRLAKH---GLIHGDFNEF 234 (397)
T ss_dssp --HHHTTCSCCCEEEE----ETTEEEEECCSCEEGGGCCC------CSCHHHHHHHHHHHHHHHHHT---TEECSCCSTT
T ss_pred --HHhcCCCCCeeeec----cCceEEEEecCCccHhhhcc------cHHHHHHHHHHHHHHHHHHHC---CCcCCCCCHH
Confidence 112221 122221 12379999999988865432 234567899999999999998 9999999999
Q ss_pred CEEEcCCCC----------EEEeecccceeec
Q 001384 938 NVLLDKEGK----------ALVTDFGLARVVS 959 (1088)
Q Consensus 938 NIll~~~~~----------~kl~Dfg~a~~~~ 959 (1088)
|||+++++. +.|+||+-+....
T Consensus 235 NILl~~dgd~~d~~~~~~~~~iID~~Q~V~~~ 266 (397)
T 4gyi_A 235 NILIREEKDAEDPSSITLTPIIIXFPQMVSMD 266 (397)
T ss_dssp SEEEEEEECSSCTTSEEEEEEECCCTTCEETT
T ss_pred HEEEeCCCCcccccccccceEEEEeCCcccCC
Confidence 999998773 8999999887644
No 380
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.57 E-value=5.5e-15 Score=148.60 Aligned_cols=90 Identities=26% Similarity=0.296 Sum_probs=41.0
Q ss_pred cccCCcCcceeeccccccCCcCCcccCCCCCCcEEEccCCcCCCCCC--ccccCCCCCcEEEccccccccCCC---cccc
Q 001384 384 EISQMRSLKFLILAHNRFNGSIPAVYGNMPNLQTLDLSFNELTGPIP--PSIGNLTSLLWLMLANNSLSGEIP---GEIG 458 (1088)
Q Consensus 384 ~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p--~~~~~l~~L~~L~L~~N~l~~~~p---~~l~ 458 (1088)
.+..+++|++|++++|++++.+|..+..+++|++|++++|++++ +| ..++.+++|++|++++|.+++..+ ..+.
T Consensus 66 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~ 144 (168)
T 2ell_A 66 NLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKD-ISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFK 144 (168)
T ss_dssp SCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCS-SGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHT
T ss_pred hhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCc-chhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHH
Confidence 33344444444444444443344444444444444444444442 22 344445555555555555543222 2445
Q ss_pred CCCCCCeEEccCCcCc
Q 001384 459 NCTSLLWLNLSNNKLS 474 (1088)
Q Consensus 459 ~l~~L~~L~L~~N~l~ 474 (1088)
.+++|++|++++|.+.
T Consensus 145 ~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 145 LLPQLTYLDGYDREDQ 160 (168)
T ss_dssp TCSSCCEETTEETTSC
T ss_pred hCccCcEecCCCCChh
Confidence 5555555555555544
No 381
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.57 E-value=7.6e-15 Score=147.55 Aligned_cols=84 Identities=20% Similarity=0.254 Sum_probs=43.0
Q ss_pred CccCEEEcCCCccc-ccCcccccCCCCCcEEEccCccccCCCccccCCCCCCCEEeCCCCcCCccCcccccCCCCCcEEE
Q 001384 244 CSLEIFDLSENEFI-GDFPGEVSNCRNLVVLNLFGNNFSGPIPAEIGSISGLEALFLGKNNFLSVIPESLLNLSKLEVLD 322 (1088)
Q Consensus 244 ~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 322 (1088)
++|++|++++|+++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|+|++|++++.+|..+.++++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 45556666665555 45555555555555555555555533 4444455555555555554444444444444444444
Q ss_pred cCCCcCC
Q 001384 323 LSSNNFG 329 (1088)
Q Consensus 323 L~~N~l~ 329 (1088)
|++|.++
T Consensus 102 Ls~N~l~ 108 (168)
T 2ell_A 102 LSGNKLK 108 (168)
T ss_dssp CBSSSCC
T ss_pred ccCCccC
Confidence 4444443
No 382
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.55 E-value=1.7e-14 Score=148.28 Aligned_cols=111 Identities=31% Similarity=0.412 Sum_probs=102.2
Q ss_pred CCcCEEEccCCccCCCCCccccCCcCcceeeccccccCCcCCcccCCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEc
Q 001384 365 PNISRLDLSHNNFTGPLPVEISQMRSLKFLILAHNRFNGSIPAVYGNMPNLQTLDLSFNELTGPIPPSIGNLTSLLWLML 444 (1088)
Q Consensus 365 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 444 (1088)
++|++|+|++|+++ .+|..|.++++|+.|+|++|+|++..+..|.++++|++|+|++|+|++..|..|.++++|++|+|
T Consensus 31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 47899999999998 78899999999999999999999888889999999999999999999877888999999999999
Q ss_pred cccccccCCCccccCCCCCCeEEccCCcCccC
Q 001384 445 ANNSLSGEIPGEIGNCTSLLWLNLSNNKLSGN 476 (1088)
Q Consensus 445 ~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ 476 (1088)
++|+|++..+..|..+++|+.|+|++|++.+.
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 110 HGNDISVVPEGAFNDLSALSHLAIGANPLYCD 141 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred CCCCCCeeChhhhhcCccccEEEeCCCCeecC
Confidence 99999965566799999999999999999854
No 383
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.54 E-value=2.3e-14 Score=145.39 Aligned_cols=114 Identities=25% Similarity=0.253 Sum_probs=102.0
Q ss_pred CCcCEEEccCCccCCCCCccccCCcCcceeeccccccCCcCCcccCCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEc
Q 001384 365 PNISRLDLSHNNFTGPLPVEISQMRSLKFLILAHNRFNGSIPAVYGNMPNLQTLDLSFNELTGPIPPSIGNLTSLLWLML 444 (1088)
Q Consensus 365 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 444 (1088)
++|+.|++++|++++..+..+..+++|++|++++|++++..+..++.+++|++|++++|++++..+..+.++++|++|+|
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 57899999999999777777899999999999999999777777899999999999999999776677899999999999
Q ss_pred cccccccCCCccccCCCCCCeEEccCCcCccCCC
Q 001384 445 ANNSLSGEIPGEIGNCTSLLWLNLSNNKLSGNIP 478 (1088)
Q Consensus 445 ~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip 478 (1088)
++|++++..+..+..+++|++|+|++|++++..|
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 9999996555567899999999999999997665
No 384
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.53 E-value=1.9e-13 Score=157.03 Aligned_cols=229 Identities=11% Similarity=0.136 Sum_probs=143.3
Q ss_pred cccccccCCCccCEEEcCCCcccccCcccccCCCCCcEEEccCccccCCCccccCCCCCCCEEeCCCCcCCccCcccccC
Q 001384 235 VSSSVFKENCSLEIFDLSENEFIGDFPGEVSNCRNLVVLNLFGNNFSGPIPAEIGSISGLEALFLGKNNFLSVIPESLLN 314 (1088)
Q Consensus 235 ~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~ 314 (1088)
+....|.+ ++|+.+++.. .++..-+.+|.++++|+.++|.+|+++......|. ..+|+.+.|.. .+..+-..+|.+
T Consensus 149 I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~-~l~~I~~~aF~~ 224 (401)
T 4fdw_A 149 IGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPV-TLKEIGSQAFLK 224 (401)
T ss_dssp ECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCT-TCCEECTTTTTT
T ss_pred ECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCC-chheehhhHhhC
Confidence 34445555 3566777664 45555566677777777777777777633333343 56777777763 355555666777
Q ss_pred CCCCcEEEcCCCcCCCchhHhhhcccccceeecCcCcccCCCCCccccCCCCcCEEEccCCccC-----CCCCccccCCc
Q 001384 315 LSKLEVLDLSSNNFGGEVQKIFGRFTQVKILALHSNSYIDGMNSSGILKLPNISRLDLSHNNFT-----GPLPVEISQMR 389 (1088)
Q Consensus 315 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-----~~~p~~l~~l~ 389 (1088)
+++|+.+++..| ++......|.. .+|+.+.+..+ +..+....|.++++|+.+++.+|.+. ...+..|.+++
T Consensus 225 ~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~~--i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~ 300 (401)
T 4fdw_A 225 TSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPNG--VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCP 300 (401)
T ss_dssp CTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEETT--CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCT
T ss_pred CCCCCEEecCCC-ccCcccccccc-CCccEEEeCCC--ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCc
Confidence 777777777654 55555566665 56666666332 34445566667777777777766654 23445667777
Q ss_pred CcceeeccccccCCcCCcccCCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEccccccccCCCccccCCC-CCCeEEc
Q 001384 390 SLKFLILAHNRFNGSIPAVYGNMPNLQTLDLSFNELTGPIPPSIGNLTSLLWLMLANNSLSGEIPGEIGNCT-SLLWLNL 468 (1088)
Q Consensus 390 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~L 468 (1088)
+|+.++|. +.++..-..+|.++++|+.++|..| ++..-+..|.++ +|+.+++.+|.+....+..|..++ +++.|++
T Consensus 301 ~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~v 377 (401)
T 4fdw_A 301 KLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRV 377 (401)
T ss_dssp TCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEE
T ss_pred cCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEe
Confidence 77777777 3466455567777777777777544 553445567777 777777777777654455566663 5667766
Q ss_pred cCCcCc
Q 001384 469 SNNKLS 474 (1088)
Q Consensus 469 ~~N~l~ 474 (1088)
..|.+.
T Consensus 378 p~~~~~ 383 (401)
T 4fdw_A 378 PAESVE 383 (401)
T ss_dssp CGGGHH
T ss_pred CHHHHH
Confidence 665543
No 385
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.53 E-value=3.9e-14 Score=145.63 Aligned_cols=105 Identities=29% Similarity=0.435 Sum_probs=70.3
Q ss_pred eEEccCCccccccCcccccCCCccEEeccccccccCCCCcccCc-cceEEEccCCcccccCCccccCCccCcEEEccccc
Q 001384 566 YLQLSGNQLSGELSPDIGKLQNFSMVHLGFNQFDGKLPSQFDQL-PLIVLNLTRNNFSGEIPSEFGNIKCLQNLDLSYNN 644 (1088)
Q Consensus 566 ~L~l~~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~l-~l~~l~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~ 644 (1088)
+|+|++|+++ .+|..+..+++|+.|+|++|++++..|..|..+ .|+.|+|++|++++..|..|.++++|+.|+|++|+
T Consensus 35 ~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~ 113 (193)
T 2wfh_A 35 ELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGND 113 (193)
T ss_dssp EEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCC
Confidence 3444444444 344455555555566666666655555555555 46666666666665666678888888888888888
Q ss_pred cCCcCCcccccccccceeeccCCCCcc
Q 001384 645 FSGPFPASFNNLTELSKLNISYNPLVS 671 (1088)
Q Consensus 645 l~g~~p~~~~~l~~L~~l~l~~N~l~~ 671 (1088)
|++..+..|..+++|+.|+|++|+|.+
T Consensus 114 l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 114 ISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCeeChhhhhcCccccEEEeCCCCeec
Confidence 886555568888888888888888843
No 386
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.52 E-value=2e-14 Score=141.31 Aligned_cols=85 Identities=18% Similarity=0.207 Sum_probs=50.8
Q ss_pred CccCEEEcCCCccc-ccCcccccCCCCCcEEEccCccccCCCccccCCCCCCCEEeCCCCcCCccCcccccCCCCCcEEE
Q 001384 244 CSLEIFDLSENEFI-GDFPGEVSNCRNLVVLNLFGNNFSGPIPAEIGSISGLEALFLGKNNFLSVIPESLLNLSKLEVLD 322 (1088)
Q Consensus 244 ~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 322 (1088)
++|+.|++++|+++ +.+|..+..+++|++|++++|.+++. ..++.+++|++|+|++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 45666666666665 55666666666666666666666643 4555556666666666665555555555555555555
Q ss_pred cCCCcCCC
Q 001384 323 LSSNNFGG 330 (1088)
Q Consensus 323 L~~N~l~~ 330 (1088)
+++|.+++
T Consensus 95 ls~N~i~~ 102 (149)
T 2je0_A 95 LSGNKIKD 102 (149)
T ss_dssp CTTSCCCS
T ss_pred CCCCcCCC
Confidence 55555554
No 387
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.51 E-value=1.2e-14 Score=142.95 Aligned_cols=105 Identities=22% Similarity=0.248 Sum_probs=53.5
Q ss_pred CCCCcCEEEccCCccCCCCCccccCCcCcceeeccccccCCcCCcccCCCCCCcEEEccCCcCCCC-CCccccCCCCCcE
Q 001384 363 KLPNISRLDLSHNNFTGPLPVEISQMRSLKFLILAHNRFNGSIPAVYGNMPNLQTLDLSFNELTGP-IPPSIGNLTSLLW 441 (1088)
Q Consensus 363 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~ 441 (1088)
.+++|++|++++|.+++. ..+..+++|++|++++|++++.+|..++.+++|++|++++|++++. .|..++.+++|++
T Consensus 40 ~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~ 117 (149)
T 2je0_A 40 EFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKS 117 (149)
T ss_dssp TCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCE
T ss_pred hcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCE
Confidence 344555555555555533 4445555555555555555544555444555555555555555531 2244555555555
Q ss_pred EEccccccccCCC---ccccCCCCCCeEEcc
Q 001384 442 LMLANNSLSGEIP---GEIGNCTSLLWLNLS 469 (1088)
Q Consensus 442 L~L~~N~l~~~~p---~~l~~l~~L~~L~L~ 469 (1088)
|++++|.+++..+ ..++.+++|++|+++
T Consensus 118 L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 118 LDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 5555555553333 245555555555554
No 388
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.51 E-value=3.9e-13 Score=154.39 Aligned_cols=224 Identities=13% Similarity=0.124 Sum_probs=129.2
Q ss_pred ceEEeccCccCCCCCCccccCCCCCcEEEccCccccccccccCcccceecccCcccccccccccccCCCccCEEEcCCCc
Q 001384 176 LVVANLSLNNLTGRIDTCFDGCLNLRYLDLSSNNFRGNIWNGLAQLVEFSVSENVLSGVVSSSVFKENCSLEIFDLSENE 255 (1088)
Q Consensus 176 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 255 (1088)
|+.+.+.. +++.+.+.+|.+|++|+.++|++|+++ .++...|. .++|+.+.|..+
T Consensus 159 L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~----------------------~I~~~aF~-~~~L~~l~lp~~- 213 (401)
T 4fdw_A 159 VQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT----------------------KLPASTFV-YAGIEEVLLPVT- 213 (401)
T ss_dssp CCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS----------------------EECTTTTT-TCCCSEEECCTT-
T ss_pred ceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce----------------------EechhhEe-ecccCEEEeCCc-
Confidence 44444442 444444455555555555555555443 23344444 356666666533
Q ss_pred ccccCcccccCCCCCcEEEccCccccCCCccccCCCCCCCEEeCCCCcCCccCcccccCCCCCcEEEcCCCcCCCchhHh
Q 001384 256 FIGDFPGEVSNCRNLVVLNLFGNNFSGPIPAEIGSISGLEALFLGKNNFLSVIPESLLNLSKLEVLDLSSNNFGGEVQKI 335 (1088)
Q Consensus 256 l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~ 335 (1088)
++..-..+|.++++|+.+++..| ++.+...+|.+ .+|+.+.| .+.++.....+|.++++|+.+++.+|.+....
T Consensus 214 l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~--- 287 (401)
T 4fdw_A 214 LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDP--- 287 (401)
T ss_dssp CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCT---
T ss_pred hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCc---
Confidence 44455556666666666666653 33333444444 56666666 34445544556666666666666665543100
Q ss_pred hhcccccceeecCcCcccCCCCCccccCCCCcCEEEccCCccCCCCCccccCCcCcceeeccccccCCcCCcccCCCCCC
Q 001384 336 FGRFTQVKILALHSNSYIDGMNSSGILKLPNISRLDLSHNNFTGPLPVEISQMRSLKFLILAHNRFNGSIPAVYGNMPNL 415 (1088)
Q Consensus 336 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 415 (1088)
...+....|.++++|+.++|. +.++......|.++++|+.++|..| ++..-+.+|.++ +|
T Consensus 288 -----------------~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L 347 (401)
T 4fdw_A 288 -----------------EAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GI 347 (401)
T ss_dssp -----------------TCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CC
T ss_pred -----------------ccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CC
Confidence 112334455666777777776 3455455566777778888888554 554556677777 88
Q ss_pred cEEEccCCcCCCCCCccccCC-CCCcEEEccccccc
Q 001384 416 QTLDLSFNELTGPIPPSIGNL-TSLLWLMLANNSLS 450 (1088)
Q Consensus 416 ~~L~L~~N~l~~~~p~~~~~l-~~L~~L~L~~N~l~ 450 (1088)
+.+++++|.+....+..+.++ .+++.|++..+.+.
T Consensus 348 ~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 348 KEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp CEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred CEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 888888887775555566666 36778888777654
No 389
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.50 E-value=1.2e-13 Score=139.91 Aligned_cols=87 Identities=23% Similarity=0.307 Sum_probs=43.3
Q ss_pred CcCEEEccCCccCCCCCccccCCcCcceeeccccccCCcCCcccCCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEcc
Q 001384 366 NISRLDLSHNNFTGPLPVEISQMRSLKFLILAHNRFNGSIPAVYGNMPNLQTLDLSFNELTGPIPPSIGNLTSLLWLMLA 445 (1088)
Q Consensus 366 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 445 (1088)
+|++|+|++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|+|+
T Consensus 53 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 132 (177)
T 2o6r_A 53 QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 132 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred cccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEec
Confidence 33444444444443333334445555555555555554444445555555555555555553333334555566666666
Q ss_pred ccccccC
Q 001384 446 NNSLSGE 452 (1088)
Q Consensus 446 ~N~l~~~ 452 (1088)
+|.+.+.
T Consensus 133 ~N~~~~~ 139 (177)
T 2o6r_A 133 TNPWDCS 139 (177)
T ss_dssp SSCBCCC
T ss_pred CCCeecc
Confidence 6655543
No 390
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.45 E-value=1.4e-15 Score=157.39 Aligned_cols=84 Identities=23% Similarity=0.264 Sum_probs=39.6
Q ss_pred CcCcceeeccccccCCcCCc------ccCCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEccccccccCCCccccCCC
Q 001384 388 MRSLKFLILAHNRFNGSIPA------VYGNMPNLQTLDLSFNELTGPIPPSIGNLTSLLWLMLANNSLSGEIPGEIGNCT 461 (1088)
Q Consensus 388 l~~L~~L~L~~N~l~~~~p~------~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 461 (1088)
...++.++++.|.++|.+|. .+..+++|++|++++|++++ +| .+.++++|++|++++|+++ .+|..+..++
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~ 93 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVAD 93 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHH
T ss_pred cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCC
Confidence 34455555555555544443 44444445555555554442 33 4444444444444444444 3444444444
Q ss_pred CCCeEEccCCcCc
Q 001384 462 SLLWLNLSNNKLS 474 (1088)
Q Consensus 462 ~L~~L~L~~N~l~ 474 (1088)
+|++|+|++|+++
T Consensus 94 ~L~~L~L~~N~l~ 106 (198)
T 1ds9_A 94 TLEELWISYNQIA 106 (198)
T ss_dssp HCSEEEEEEEECC
T ss_pred cCCEEECcCCcCC
Confidence 4444444444443
No 391
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.43 E-value=3.9e-12 Score=146.70 Aligned_cols=333 Identities=14% Similarity=0.163 Sum_probs=182.0
Q ss_pred ccccccccccCCccCCeeeCCCCCCCCCcCccCCCCCCCcEEECcccccc--CcccCCCCCCCceeecccccccccccCc
Q 001384 91 ISGDIFNNFSALTQLSYLDLSRNTFSGSIPDDLSSCRSLKYLNLSHNILS--GDLNLSGLRSLEILDLSVNRIHGEISFS 168 (1088)
Q Consensus 91 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~--~~~~l~~l~~L~~L~Ls~N~l~~~~~~~ 168 (1088)
++..-..+|.++++|+.+.|.. .++.....+|.+|.+|+.++|..+ ++ +...+.++++|+.+.+..+ +......+
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~a 135 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEA 135 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTT
T ss_pred EeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeeccee
Confidence 4444456788999999999974 477555678999999999999765 43 4556888888888877654 33233333
Q ss_pred hhhhcccceEEeccCccCCCCCCccccCCCCCcEEEccCccccccccccCcccceecccCcccccccccccccCCCccCE
Q 001384 169 FPAICEKLVVANLSLNNLTGRIDTCFDGCLNLRYLDLSSNNFRGNIWNGLAQLVEFSVSENVLSGVVSSSVFKENCSLEI 248 (1088)
Q Consensus 169 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 248 (1088)
|. .+..+.... .+.+......+|.++++|+.+.+..+.. .+....|.++.+|+.
T Consensus 136 F~-~~~~~~~~~--~~~~~~i~~~aF~~c~~L~~i~l~~~~~-----------------------~I~~~~F~~c~~L~~ 189 (394)
T 4fs7_A 136 FK-GCDFKEITI--PEGVTVIGDEAFATCESLEYVSLPDSME-----------------------TLHNGLFSGCGKLKS 189 (394)
T ss_dssp TT-TCCCSEEEC--CTTCCEECTTTTTTCTTCCEEECCTTCC-----------------------EECTTTTTTCTTCCB
T ss_pred ee-ccccccccc--CccccccchhhhcccCCCcEEecCCccc-----------------------eeccccccCCCCceE
Confidence 32 222222221 2233334455677777777777654421 133444555555555
Q ss_pred EEcCCCcccccCcccccCCCCCcEEEccCccccCCCccccCCCCCCCEEeCCCCcCCccCcccccCCCCCcEEEcCCCcC
Q 001384 249 FDLSENEFIGDFPGEVSNCRNLVVLNLFGNNFSGPIPAEIGSISGLEALFLGKNNFLSVIPESLLNLSKLEVLDLSSNNF 328 (1088)
Q Consensus 249 L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l 328 (1088)
+++..+ ++..-..+|.++..|+.+.+..+... +........+|+.+.+..+ ++......+..+.+|+.+.+..+..
T Consensus 190 i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~ 265 (394)
T 4fs7_A 190 IKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKL 265 (394)
T ss_dssp CCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTC
T ss_pred EEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcc
Confidence 555544 33334445555666665555544322 2223333455666655432 2333334555566666666655432
Q ss_pred CCchhHhhhcccccceeecCcCcccCCCCCccccCCCCcCEEEccCCccCCCCCccccCCcCcceeeccccccCCcCCcc
Q 001384 329 GGEVQKIFGRFTQVKILALHSNSYIDGMNSSGILKLPNISRLDLSHNNFTGPLPVEISQMRSLKFLILAHNRFNGSIPAV 408 (1088)
Q Consensus 329 ~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~ 408 (1088)
......|.....++.+....+. .....|..+.+|+.+.+..+ ++......|.++++|+.++|.++ ++..-..+
T Consensus 266 -~i~~~~F~~~~~l~~~~~~~~~----i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~a 338 (394)
T 4fs7_A 266 -RIGGSLFYNCSGLKKVIYGSVI----VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRS 338 (394)
T ss_dssp -EECSCTTTTCTTCCEEEECSSE----ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTT
T ss_pred -eeeccccccccccceeccCcee----eccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHh
Confidence 2334445555555554444332 12234445566666666544 33333445666666666666533 44344556
Q ss_pred cCCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEccccccccCCCccccCCCCCCeE
Q 001384 409 YGNMPNLQTLDLSFNELTGPIPPSIGNLTSLLWLMLANNSLSGEIPGEIGNCTSLLWL 466 (1088)
Q Consensus 409 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 466 (1088)
|.++++|+.+++..| ++..-...|.++++|+.+++..+ ++ .+...|.++++|+.+
T Consensus 339 F~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 339 FRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp TTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred ccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 666666777666655 44333445666666766666544 22 234456666666543
No 392
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.42 E-value=5.3e-13 Score=134.06 Aligned_cols=110 Identities=27% Similarity=0.316 Sum_probs=97.7
Q ss_pred CcCEEEccCCccCCCCCccccCCcCcceeeccccccCCcCCcccCCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEcc
Q 001384 366 NISRLDLSHNNFTGPLPVEISQMRSLKFLILAHNRFNGSIPAVYGNMPNLQTLDLSFNELTGPIPPSIGNLTSLLWLMLA 445 (1088)
Q Consensus 366 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 445 (1088)
..+.+++++|.++ .+|..+. ++|++|+|++|+|++..|..|..+++|++|+|++|+|++..+..+.++++|++|+|+
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 3578999999999 5787664 799999999999998889999999999999999999997666678999999999999
Q ss_pred ccccccCCCccccCCCCCCeEEccCCcCccCCC
Q 001384 446 NNSLSGEIPGEIGNCTSLLWLNLSNNKLSGNIP 478 (1088)
Q Consensus 446 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip 478 (1088)
+|+|++..+..|.++++|++|+|++|++++..+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 999997666679999999999999999996543
No 393
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.42 E-value=1.4e-13 Score=139.42 Aligned_cols=105 Identities=23% Similarity=0.305 Sum_probs=82.3
Q ss_pred CcCEEEccCCccCCCCCccccCCcCcceeeccccccCCcCCcccCCCCCCcEEEccCCcCCCCCCc--cccCCCCCcEEE
Q 001384 366 NISRLDLSHNNFTGPLPVEISQMRSLKFLILAHNRFNGSIPAVYGNMPNLQTLDLSFNELTGPIPP--SIGNLTSLLWLM 443 (1088)
Q Consensus 366 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~--~~~~l~~L~~L~ 443 (1088)
+|++|+|++|.+++. ..+..+++|++|++++|++++..|..++.+++|++|++++|+++ .+|. .++.+++|++|+
T Consensus 43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~ 119 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLC 119 (176)
T ss_dssp CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEE
T ss_pred CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEE
Confidence 677777777777643 56777888888888888888544455578888888888888886 5666 788888899999
Q ss_pred ccccccccCCCcc----ccCCCCCCeEEccCCcCc
Q 001384 444 LANNSLSGEIPGE----IGNCTSLLWLNLSNNKLS 474 (1088)
Q Consensus 444 L~~N~l~~~~p~~----l~~l~~L~~L~L~~N~l~ 474 (1088)
+++|.++ .+|.. ++.+++|++||+++|...
T Consensus 120 l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 120 ILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred ecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 9999887 56664 888999999999998876
No 394
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.41 E-value=3e-13 Score=136.89 Aligned_cols=131 Identities=20% Similarity=0.297 Sum_probs=61.3
Q ss_pred cCCCCCcEEEccCccccCCCccccCCCC-CCCEEeCCCCcCCccCcccccCCCCCcEEEcCCCcCCCchhHhhhcccccc
Q 001384 265 SNCRNLVVLNLFGNNFSGPIPAEIGSIS-GLEALFLGKNNFLSVIPESLLNLSKLEVLDLSSNNFGGEVQKIFGRFTQVK 343 (1088)
Q Consensus 265 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 343 (1088)
.++++|++|++++|+++. +|. +..+. +|+.|+|++|.+++. ..+..+++|++|+|++|.+++.++..|+.
T Consensus 16 ~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~----- 86 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQA----- 86 (176)
T ss_dssp ECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHH-----
T ss_pred CCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhc-----
Confidence 344455555555555542 222 22222 555555555555543 34555555555555555555443333332
Q ss_pred eeecCcCcccCCCCCccccCCCCcCEEEccCCccCCCCCc--cccCCcCcceeeccccccCCcCCcc----cCCCCCCcE
Q 001384 344 ILALHSNSYIDGMNSSGILKLPNISRLDLSHNNFTGPLPV--EISQMRSLKFLILAHNRFNGSIPAV----YGNMPNLQT 417 (1088)
Q Consensus 344 ~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~--~l~~l~~L~~L~L~~N~l~~~~p~~----~~~l~~L~~ 417 (1088)
+++|++|+|++|+++ .+|. .+..+++|+.|++++|.++ .+|.. ++.+++|+.
T Consensus 87 --------------------l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~ 144 (176)
T 1a9n_A 87 --------------------LPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRV 144 (176)
T ss_dssp --------------------CTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSE
T ss_pred --------------------CCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccce
Confidence 233444444444443 2333 4444455555555555554 33332 445555555
Q ss_pred EEccCCcCC
Q 001384 418 LDLSFNELT 426 (1088)
Q Consensus 418 L~L~~N~l~ 426 (1088)
||+++|.+.
T Consensus 145 Ld~~~n~~~ 153 (176)
T 1a9n_A 145 LDFQKVKLK 153 (176)
T ss_dssp ETTEECCHH
T ss_pred eCCCcCCHH
Confidence 555555443
No 395
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.41 E-value=2.1e-15 Score=156.20 Aligned_cols=152 Identities=22% Similarity=0.226 Sum_probs=98.3
Q ss_pred CCCCCCEEeCCCCcCCccCcc------cccCCCCCcEEEcCCCcCCCchhHhhhcccccceeecCcCcccCCCCCccccC
Q 001384 290 SISGLEALFLGKNNFLSVIPE------SLLNLSKLEVLDLSSNNFGGEVQKIFGRFTQVKILALHSNSYIDGMNSSGILK 363 (1088)
Q Consensus 290 ~l~~L~~L~L~~N~l~~~~p~------~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~ 363 (1088)
....++.++++.+.+.+.+|. .+..+++|++|+|++|.+++. | .+..
T Consensus 16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l-~--------------------------~~~~ 68 (198)
T 1ds9_A 16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI-S--------------------------SLSG 68 (198)
T ss_dssp HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCC-C--------------------------CHHH
T ss_pred hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCccc-c--------------------------cccc
Confidence 344555555555555555443 455555555555555554431 1 3345
Q ss_pred CCCcCEEEccCCccCCCCCccccCCcCcceeeccccccCCcCCcccCCCCCCcEEEccCCcCCCCCC--ccccCCCCCcE
Q 001384 364 LPNISRLDLSHNNFTGPLPVEISQMRSLKFLILAHNRFNGSIPAVYGNMPNLQTLDLSFNELTGPIP--PSIGNLTSLLW 441 (1088)
Q Consensus 364 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p--~~~~~l~~L~~ 441 (1088)
+++|++|++++|.++ .+|..+..+++|++|++++|++++ +| .+..+++|++|++++|++++ +| ..+..+++|++
T Consensus 69 l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~-~~~~~~l~~l~~L~~ 144 (198)
T 1ds9_A 69 MENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITN-WGEIDKLAALDKLED 144 (198)
T ss_dssp HTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCC-HHHHHHHTTTTTCSE
T ss_pred CCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCc-hhHHHHHhcCCCCCE
Confidence 566777777777777 566666667778888888887774 44 46677778888888887773 33 36777778888
Q ss_pred EEccccccccCCCcc----------ccCCCCCCeEEccCCcCc
Q 001384 442 LMLANNSLSGEIPGE----------IGNCTSLLWLNLSNNKLS 474 (1088)
Q Consensus 442 L~L~~N~l~~~~p~~----------l~~l~~L~~L~L~~N~l~ 474 (1088)
|++++|.+++.+|.. +..+++|++|| +|+++
T Consensus 145 L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 145 LLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp EEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred EEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 888888877665543 67777888776 66665
No 396
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.40 E-value=9.7e-13 Score=132.63 Aligned_cols=112 Identities=26% Similarity=0.292 Sum_probs=97.2
Q ss_pred cCEEEccCCccCCCCCccccCCcCcceeeccccccCCcCCcccCCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEccc
Q 001384 367 ISRLDLSHNNFTGPLPVEISQMRSLKFLILAHNRFNGSIPAVYGNMPNLQTLDLSFNELTGPIPPSIGNLTSLLWLMLAN 446 (1088)
Q Consensus 367 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 446 (1088)
-+.+++++|+++ .+|..+. ++|+.|+|++|+|++..|..|+++++|++|+|++|+|++..+..+.++++|++|+|++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 368999999997 7887775 8999999999999988899999999999999999999965555678999999999999
Q ss_pred cccccCCCccccCCCCCCeEEccCCcCccCCCchhh
Q 001384 447 NSLSGEIPGEIGNCTSLLWLNLSNNKLSGNIPPEVM 482 (1088)
Q Consensus 447 N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~~~ 482 (1088)
|+|++..+..|..+++|++|+|++|++.+ .|..+.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c-~~~~~~ 125 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDC-ECRDIM 125 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCT-TBGGGH
T ss_pred CccceeCHHHhccccCCCEEEeCCCCccc-ccccHH
Confidence 99996555569999999999999999984 454443
No 397
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.39 E-value=8.9e-13 Score=132.44 Aligned_cols=103 Identities=25% Similarity=0.322 Sum_probs=93.3
Q ss_pred ceEEccCCccccccCcccccCCCccEEeccccccccCCCCcccCc-cceEEEccCCcccccCCccccCCccCcEEEcccc
Q 001384 565 GYLQLSGNQLSGELSPDIGKLQNFSMVHLGFNQFDGKLPSQFDQL-PLIVLNLTRNNFSGEIPSEFGNIKCLQNLDLSYN 643 (1088)
Q Consensus 565 ~~L~l~~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~l-~l~~l~l~~N~l~~~~p~~~~~l~~L~~L~l~~N 643 (1088)
+.+++++|+++ .+|..+. .+|+.|+|++|+|++..|..|+.+ .|++|+|++|+|++..|..|.++++|+.|+|++|
T Consensus 12 ~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 46999999999 5888774 889999999999998889999988 7999999999999766677899999999999999
Q ss_pred ccCCcCCcccccccccceeeccCCCCc
Q 001384 644 NFSGPFPASFNNLTELSKLNISYNPLV 670 (1088)
Q Consensus 644 ~l~g~~p~~~~~l~~L~~l~l~~N~l~ 670 (1088)
+|++..|..|..+++|+.|+|++|++.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 999766677999999999999999994
No 398
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.36 E-value=1.5e-12 Score=131.23 Aligned_cols=103 Identities=23% Similarity=0.320 Sum_probs=92.0
Q ss_pred ceEEccCCccccccCcccccCCCccEEeccccccccCCCCcccCc-cceEEEccCCcccccCCccccCCccCcEEEcccc
Q 001384 565 GYLQLSGNQLSGELSPDIGKLQNFSMVHLGFNQFDGKLPSQFDQL-PLIVLNLTRNNFSGEIPSEFGNIKCLQNLDLSYN 643 (1088)
Q Consensus 565 ~~L~l~~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~l-~l~~l~l~~N~l~~~~p~~~~~l~~L~~L~l~~N 643 (1088)
..+++++|+++ .+|..+. .+|+.|+|++|+|++.+|..|+.+ .|+.|+|++|+|++..|..|+++++|+.|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 46899999997 7888776 899999999999998889999988 7999999999999655566899999999999999
Q ss_pred ccCCcCCcccccccccceeeccCCCCc
Q 001384 644 NFSGPFPASFNNLTELSKLNISYNPLV 670 (1088)
Q Consensus 644 ~l~g~~p~~~~~l~~L~~l~l~~N~l~ 670 (1088)
+|++..|..|..+++|+.|+|++|+|.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 999655566999999999999999994
No 399
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.33 E-value=2.8e-11 Score=139.50 Aligned_cols=316 Identities=16% Similarity=0.147 Sum_probs=211.5
Q ss_pred CCCCcCccCCCCCCCcEEECcccccc--CcccCCCCCCCceeecccccccccccCchhhhcccceEEeccCccCCCCCCc
Q 001384 115 FSGSIPDDLSSCRSLKYLNLSHNILS--GDLNLSGLRSLEILDLSVNRIHGEISFSFPAICEKLVVANLSLNNLTGRIDT 192 (1088)
Q Consensus 115 l~~~~p~~l~~l~~L~~L~Ls~n~l~--~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 192 (1088)
++.....+|.+|.+|+.+.|..+ ++ +..+|.+|++|+.++|..+ ++. ++......|.+|+.+.+.. .+......
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~-I~~~aF~~c~~L~~i~~p~-~l~~i~~~ 134 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKM-IGRCTFSGCYALKSILLPL-MLKSIGVE 134 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCE-ECTTTTTTCTTCCCCCCCT-TCCEECTT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceE-ccchhhcccccchhhcccC-ceeeecce
Confidence 44344567888888888888754 44 3446777888888877654 332 2222222333444333321 12223333
Q ss_pred cccCCCCCcEEEccCccccccccccCcccceecccCcccccccccccccCCCccCEEEcCCCcccccCcccccCCCCCcE
Q 001384 193 CFDGCLNLRYLDLSSNNFRGNIWNGLAQLVEFSVSENVLSGVVSSSVFKENCSLEIFDLSENEFIGDFPGEVSNCRNLVV 272 (1088)
Q Consensus 193 ~l~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 272 (1088)
+|.++..++. ....... .+....|.++.+|+.+.+.++. ...-...|.++++|+.
T Consensus 135 aF~~~~~~~~---------------------~~~~~~~---~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~ 189 (394)
T 4fs7_A 135 AFKGCDFKEI---------------------TIPEGVT---VIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKS 189 (394)
T ss_dssp TTTTCCCSEE---------------------ECCTTCC---EECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCB
T ss_pred eeeccccccc---------------------ccCcccc---ccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceE
Confidence 3333322211 1111111 2445678889999999998664 4456678889999999
Q ss_pred EEccCccccCCCccccCCCCCCCEEeCCCCcCCccCcccccCCCCCcEEEcCCCcCCCchhHhhhcccccceeecCcCcc
Q 001384 273 LNLFGNNFSGPIPAEIGSISGLEALFLGKNNFLSVIPESLLNLSKLEVLDLSSNNFGGEVQKIFGRFTQVKILALHSNSY 352 (1088)
Q Consensus 273 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~~ 352 (1088)
+++..| ++.+....|.++..|+.+.+..+... +.......++|+.+.+..+ ++......|.....++.+.+..+.
T Consensus 190 i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~- 264 (394)
T 4fs7_A 190 IKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNK- 264 (394)
T ss_dssp CCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTT-
T ss_pred EEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCc-
Confidence 999876 55455677888999999988766432 3344556678999988654 455566778888899998887663
Q ss_pred cCCCCCccccCCCCcCEEEccCCccCCCCCccccCCcCcceeeccccccCCcCCcccCCCCCCcEEEccCCcCCCCCCcc
Q 001384 353 IDGMNSSGILKLPNISRLDLSHNNFTGPLPVEISQMRSLKFLILAHNRFNGSIPAVYGNMPNLQTLDLSFNELTGPIPPS 432 (1088)
Q Consensus 353 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 432 (1088)
..+....|.....++.+....+.+. ...+..+.+|+.+.+.++ ++..-..+|.++++|+.+++.++ ++..-...
T Consensus 265 -~~i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~a 338 (394)
T 4fs7_A 265 -LRIGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRS 338 (394)
T ss_dssp -CEECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTT
T ss_pred -ceeeccccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHh
Confidence 3455667778888888888776654 246778889999998765 65455678889999999999754 66344567
Q ss_pred ccCCCCCcEEEccccccccCCCccccCCCCCCeEEccCC
Q 001384 433 IGNLTSLLWLMLANNSLSGEIPGEIGNCTSLLWLNLSNN 471 (1088)
Q Consensus 433 ~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N 471 (1088)
|.++++|+.+++..| ++..-...|.+|++|+.+++..+
T Consensus 339 F~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 339 FRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred ccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 889999999999877 66445678999999999988644
No 400
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.24 E-value=4.3e-13 Score=152.47 Aligned_cols=75 Identities=16% Similarity=0.240 Sum_probs=42.0
Q ss_pred ccCCCCCcEEEccCccccCC----CccccCCCCCCCEEeCCCCcCCcc----CcccccCCCCCcEEEcCCCcCCCchhHh
Q 001384 264 VSNCRNLVVLNLFGNNFSGP----IPAEIGSISGLEALFLGKNNFLSV----IPESLLNLSKLEVLDLSSNNFGGEVQKI 335 (1088)
Q Consensus 264 l~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~~~~~ 335 (1088)
+..+++|++|+|++|.|++. ++..+...++|++|+|++|.++.. ++..+...++|++|+|++|.|+......
T Consensus 179 L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 258 (372)
T 3un9_A 179 LAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQV 258 (372)
T ss_dssp HHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHH
T ss_pred HhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHH
Confidence 34455555555555555432 233444555666666666666532 3344445667777777777777665555
Q ss_pred hhc
Q 001384 336 FGR 338 (1088)
Q Consensus 336 ~~~ 338 (1088)
+..
T Consensus 259 L~~ 261 (372)
T 3un9_A 259 LRD 261 (372)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 401
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.17 E-value=3.8e-11 Score=135.90 Aligned_cols=103 Identities=20% Similarity=0.243 Sum_probs=92.2
Q ss_pred eEEccCC-ccccccCcccccCCCccEEeccc-cccccCCCCcccCc-cceEEEccCCcccccCCccccCCccCcEEEccc
Q 001384 566 YLQLSGN-QLSGELSPDIGKLQNFSMVHLGF-NQFDGKLPSQFDQL-PLIVLNLTRNNFSGEIPSEFGNIKCLQNLDLSY 642 (1088)
Q Consensus 566 ~L~l~~N-~l~g~~p~~~~~l~~L~~L~l~~-N~l~g~~p~~~~~l-~l~~l~l~~N~l~~~~p~~~~~l~~L~~L~l~~ 642 (1088)
.++++++ +|+ .+|. ++.+.+|+.|+|++ |+|++..|..|+.+ .|+.|+|++|+|++..|..|++|++|+.|||++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4788998 899 5888 99999999999996 99998888899988 799999999999999999999999999999999
Q ss_pred cccCCcCCcccccccccceeeccCCCCcc
Q 001384 643 NNFSGPFPASFNNLTELSKLNISYNPLVS 671 (1088)
Q Consensus 643 N~l~g~~p~~~~~l~~L~~l~l~~N~l~~ 671 (1088)
|+|++..|..+..++ |+.|+|++|+|.+
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 999965555566665 9999999999964
No 402
>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*
Probab=99.17 E-value=8.5e-11 Score=127.30 Aligned_cols=147 Identities=12% Similarity=0.018 Sum_probs=113.9
Q ss_pred HHcCCCCccceecccCceEEEEEEeCCCcEEEEEEccccCccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeEE
Q 001384 802 KATGKFSEDRIIGKGGFGTVYRGVLPDGREVAVKKLQREGLEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEKI 881 (1088)
Q Consensus 802 ~~~~~~~~~~~LG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~~ 881 (1088)
...+.|++...++.|+.+.||++... ++.+++|+...........+.+|++++..+. .+..+.++++++...+..|
T Consensus 11 ~~l~~~~~~~~~~g~s~~~v~~~~~~-~~~~vlK~~~~~~~~~~~~~~~E~~~l~~l~---~~~~vP~v~~~~~~~~~~~ 86 (263)
T 3tm0_A 11 KLIEKYRCVKDTEGMSPAKVYKLVGE-NENLYLKMTDSRYKGTTYDVEREKDMMLWLE---GKLPVPKVLHFERHDGWSN 86 (263)
T ss_dssp HHHTTSEEEECCSCCSSSEEEEEECS-SCEEEEEEECGGGTTSTTCHHHHHHHHHHHT---TTSCCCCEEEEEEETTEEE
T ss_pred HHhccceeEeeccCCCCCeEEEEECC-CCcEEEEeCCcccCCCHHHHHHHHHHHHHHh---cCCCCCeEEEEEecCCceE
Confidence 34467888888999999999999864 6889999987532223346888888888754 2566778888888888999
Q ss_pred EEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcC------------------------------------
Q 001384 882 LVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHEC------------------------------------ 925 (1088)
Q Consensus 882 lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~------------------------------------ 925 (1088)
+||||++|.+|.+.+. +..+...++.+++++++.||+..
T Consensus 87 lv~e~i~G~~l~~~~~-----~~~~~~~~~~~l~~~l~~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (263)
T 3tm0_A 87 LLMSEADGVLCSEEYE-----DEQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEED 161 (263)
T ss_dssp EEEECCSSEEHHHHCC-----TTTCHHHHHHHHHHHHHHHHHSCCTTCSCBCCHHHHHHHHHHHHHTTCSCCSGGGGSTT
T ss_pred EEEEecCCeehhhccC-----CcccHHHHHHHHHHHHHHHhCCCcccCCCcchHHHHHHHHHHHHhcccccccccccccc
Confidence 9999999999987631 22334578899999999999810
Q ss_pred --------------------CCCeEecCCCCCCEEEcCCCCEEEeeccccee
Q 001384 926 --------------------YPPIVHRDVKASNVLLDKEGKALVTDFGLARV 957 (1088)
Q Consensus 926 --------------------~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~ 957 (1088)
.+.++|+|++|.||+++.+..+.|+||+.+..
T Consensus 162 ~~~~~~~~l~~~l~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~lIDwe~a~~ 213 (263)
T 3tm0_A 162 TPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSGR 213 (263)
T ss_dssp CSSSSHHHHHHHHHHCCCCCCEEEECSSCCTTSEEEETTEEEEECCCTTCEE
T ss_pred ccCCCHHHHHHHHHhcCCCCCceEECCCCCcCcEEEECCcEEEEEEchhccc
Confidence 03589999999999998765567999997754
No 403
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.16 E-value=9.4e-13 Score=149.68 Aligned_cols=159 Identities=18% Similarity=0.169 Sum_probs=94.1
Q ss_pred CCCCCEEeCCCCcCCccCcccccC-----CCCCcEEEcCCCcCCCchhHhhh-cccccceeecCcCcccCCCCCccccCC
Q 001384 291 ISGLEALFLGKNNFLSVIPESLLN-----LSKLEVLDLSSNNFGGEVQKIFG-RFTQVKILALHSNSYIDGMNSSGILKL 364 (1088)
Q Consensus 291 l~~L~~L~L~~N~l~~~~p~~l~~-----l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~n~~~~~~~~~~~~~l 364 (1088)
++.|+.|+|++|.++......+.. .++|++|+|++|.++......+. .+++
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~----------------------- 127 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLR----------------------- 127 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHT-----------------------
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHh-----------------------
Confidence 467889999999887654443332 26899999999988765444332 3344
Q ss_pred CCcCEEEccCCccCCCCCccc-----cCCcCcceeeccccccCC----cCCcccCCCCCCcEEEccCCcCCCC----CCc
Q 001384 365 PNISRLDLSHNNFTGPLPVEI-----SQMRSLKFLILAHNRFNG----SIPAVYGNMPNLQTLDLSFNELTGP----IPP 431 (1088)
Q Consensus 365 ~~L~~L~Ls~N~l~~~~p~~l-----~~l~~L~~L~L~~N~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~----~p~ 431 (1088)
|+.|+|++|.+++.....+ ...++|+.|+|++|.|+. .++..+..+++|++|+|++|+|++. ++.
T Consensus 128 --L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~ 205 (372)
T 3un9_A 128 --ARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAA 205 (372)
T ss_dssp --EEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHH
T ss_pred --ccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHH
Confidence 5555555555543222222 123556666666666643 1333345566666777777666531 244
Q ss_pred cccCCCCCcEEEccccccccC----CCccccCCCCCCeEEccCCcCc
Q 001384 432 SIGNLTSLLWLMLANNSLSGE----IPGEIGNCTSLLWLNLSNNKLS 474 (1088)
Q Consensus 432 ~~~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~ 474 (1088)
.+...++|++|+|++|.|++. ++..+..+++|++|+|++|+++
T Consensus 206 ~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 206 QLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred HHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 455556677777777776642 3334445567777777777765
No 404
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.15 E-value=6.4e-11 Score=134.04 Aligned_cols=106 Identities=19% Similarity=0.128 Sum_probs=93.4
Q ss_pred CEEEccCC-ccCCCCCccccCCcCcceeeccc-cccCCcCCcccCCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEcc
Q 001384 368 SRLDLSHN-NFTGPLPVEISQMRSLKFLILAH-NRFNGSIPAVYGNMPNLQTLDLSFNELTGPIPPSIGNLTSLLWLMLA 445 (1088)
Q Consensus 368 ~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 445 (1088)
..++++++ +++ .+|. +..+++|+.|+|++ |+|++..|..|+.+++|+.|+|++|+|++..|..|++|++|++|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 35788888 898 5888 99999999999996 99997777899999999999999999999888899999999999999
Q ss_pred ccccccCCCccccCCCCCCeEEccCCcCccC
Q 001384 446 NNSLSGEIPGEIGNCTSLLWLNLSNNKLSGN 476 (1088)
Q Consensus 446 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ 476 (1088)
+|+|++..|..+..++ |+.|+|.+|+|...
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence 9999965555566565 99999999999853
No 405
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.09 E-value=3.3e-09 Score=122.06 Aligned_cols=328 Identities=13% Similarity=0.169 Sum_probs=153.5
Q ss_pred cccccCCc-cCCeeeCCCCCCCCCcCccCCCCCCCcEEECcccc---cc--CcccCCCCCCCceeecccccccccccCch
Q 001384 96 FNNFSALT-QLSYLDLSRNTFSGSIPDDLSSCRSLKYLNLSHNI---LS--GDLNLSGLRSLEILDLSVNRIHGEISFSF 169 (1088)
Q Consensus 96 ~~~l~~l~-~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~---l~--~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~ 169 (1088)
..+|.+.. .|+.+.+-.+ ++.....+|.+|.+|+.+.++.|. ++ +..+|.++.+|+.+.+..+ ++ .+....
T Consensus 56 ~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~-~I~~~a 132 (394)
T 4gt6_A 56 DRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VT-EIDSEA 132 (394)
T ss_dssp TTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CS-EECTTT
T ss_pred HhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cc-eehhhh
Confidence 34566663 4777777643 664556677788888888777664 33 2345667777776665543 22 122222
Q ss_pred hhhcccceEEeccCccCCCCCCccccCCCCCcEEEccCccccccccccCcccceecccCcccccccccccccCCCccCEE
Q 001384 170 PAICEKLVVANLSLNNLTGRIDTCFDGCLNLRYLDLSSNNFRGNIWNGLAQLVEFSVSENVLSGVVSSSVFKENCSLEIF 249 (1088)
Q Consensus 170 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 249 (1088)
...|.+|+.+.+.. .+......+|.++.+|+.+.+..+ ++ .+....|.. ++|+.+
T Consensus 133 F~~c~~L~~i~lp~-~~~~I~~~~F~~c~~L~~i~~~~~----------------------~~-~I~~~aF~~-~~l~~i 187 (394)
T 4gt6_A 133 FHHCEELDTVTIPE-GVTSVADGMFSYCYSLHTVTLPDS----------------------VT-AIEERAFTG-TALTQI 187 (394)
T ss_dssp TTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT----------------------CC-EECTTTTTT-CCCSEE
T ss_pred hhhhcccccccccc-eeeeecccceecccccccccccce----------------------ee-Eeccccccc-cceeEE
Confidence 22334444444432 223333334444444444443322 11 233444443 456666
Q ss_pred EcCCCcccccCcccccCCCCCcEEEccCccccCCCccccCC-CCCCCEEeCCCCcCCccCcccccCCCCCcEEEcCCCcC
Q 001384 250 DLSENEFIGDFPGEVSNCRNLVVLNLFGNNFSGPIPAEIGS-ISGLEALFLGKNNFLSVIPESLLNLSKLEVLDLSSNNF 328 (1088)
Q Consensus 250 ~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~-l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l 328 (1088)
.+..+- +..-..+|.++.+|+......+... .+...+.. ......-. ..+.....+..+.+.. .+
T Consensus 188 ~ip~~~-~~i~~~af~~c~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~ip~-~v 253 (394)
T 4gt6_A 188 HIPAKV-TRIGTNAFSECFALSTITSDSESYP-AIDNVLYEKSANGDYAL-----------IRYPSQREDPAFKIPN-GV 253 (394)
T ss_dssp EECTTC-CEECTTTTTTCTTCCEEEECCSSSC-BSSSCEEEECTTSCEEE-----------EECCTTCCCSEEECCT-TE
T ss_pred EECCcc-cccccchhhhccccceecccccccc-cccceeecccccccccc-----------cccccccccceEEcCC-cc
Confidence 665442 2244455666666666665554433 11111100 00000000 0011111222222221 12
Q ss_pred CCchhHhhhcccccceeecCcCcccCCCCCccccCCCCcCEEEccCCccCCCCCccccCCcCcceeeccccccCCcCCcc
Q 001384 329 GGEVQKIFGRFTQVKILALHSNSYIDGMNSSGILKLPNISRLDLSHNNFTGPLPVEISQMRSLKFLILAHNRFNGSIPAV 408 (1088)
Q Consensus 329 ~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~ 408 (1088)
+......|.....|+.+.+..+. ..+....|.++++|+.+.+. +.++......|.++.+|+.++|..+ ++..-..+
T Consensus 254 ~~i~~~aF~~c~~L~~i~lp~~~--~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~a 329 (394)
T 4gt6_A 254 ARIETHAFDSCAYLASVKMPDSV--VSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDA 329 (394)
T ss_dssp EEECTTTTTTCSSCCEEECCTTC--CEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTT
T ss_pred eEcccceeeecccccEEeccccc--ceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhH
Confidence 22223334444444444443221 12233445556666666664 3344333455666677777777644 44344566
Q ss_pred cCCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEccccccccCCCccccCCCCCCeEEccCCcC
Q 001384 409 YGNMPNLQTLDLSFNELTGPIPPSIGNLTSLLWLMLANNSLSGEIPGEIGNCTSLLWLNLSNNKL 473 (1088)
Q Consensus 409 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l 473 (1088)
|.++.+|+.+.+..+ ++..-...|.++++|+.+++.+|.... ..+..+.+|+.+.+..|.+
T Consensus 330 F~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 330 FAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp TTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred hhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 777777777777544 542334456777777777777765431 3456667777776665544
No 406
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.07 E-value=4.7e-09 Score=120.75 Aligned_cols=319 Identities=11% Similarity=0.153 Sum_probs=168.8
Q ss_pred eEEeccccccccccccccccCCccCCeeeCCCCC---CCCCcCccCCCCCCCcEEECcccccc-CcccCCCCCCCceeec
Q 001384 81 VNGLNLTDWNISGDIFNNFSALTQLSYLDLSRNT---FSGSIPDDLSSCRSLKYLNLSHNILS-GDLNLSGLRSLEILDL 156 (1088)
Q Consensus 81 v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~---l~~~~p~~l~~l~~L~~L~Ls~n~l~-~~~~l~~l~~L~~L~L 156 (1088)
++++.+.+ +++..-..+|.++++|+.+.+..|. ++.....+|..+.+|+.+.+..+--. +...+.++.+|+.+.+
T Consensus 66 L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~~~~I~~~aF~~c~~L~~i~l 144 (394)
T 4gt6_A 66 LTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDSVTEIDSEAFHHCEELDTVTI 144 (394)
T ss_dssp CCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTTCSEECTTTTTTCTTCCEEEC
T ss_pred CEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCccceehhhhhhhhcccccccc
Confidence 33444443 3444445678999999999998764 66455678999999999988765322 4557899999999999
Q ss_pred ccccccccccCchhhhcccceEEeccCccCCCCCCccccCCCCCcEEEccCcc--ccccccccCcccceecccCcccccc
Q 001384 157 SVNRIHGEISFSFPAICEKLVVANLSLNNLTGRIDTCFDGCLNLRYLDLSSNN--FRGNIWNGLAQLVEFSVSENVLSGV 234 (1088)
Q Consensus 157 s~N~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~--l~~~~~~~l~~L~~L~L~~n~l~~~ 234 (1088)
..+- + .+.......|..|+.+.+..+ ++.+...+|.+ .+|+.+.+..+- +....+.....++......+....
T Consensus 145 p~~~-~-~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~~~~~~~- 219 (394)
T 4gt6_A 145 PEGV-T-SVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTRIGTNAFSECFALSTITSDSESYPA- 219 (394)
T ss_dssp CTTC-C-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCEECTTTTTTCTTCCEEEECCSSSCB-
T ss_pred ccee-e-eecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccccccchhhhccccceeccccccccc-
Confidence 7643 3 344445566789999998754 66666777765 579999887653 222344444444444333322211
Q ss_pred cccccccCCCccCEEEcCCCcccccCcccccCCCCCcEEEccCccccCCCccccCCCCCCCEEeCCCCcCCccCcccccC
Q 001384 235 VSSSVFKENCSLEIFDLSENEFIGDFPGEVSNCRNLVVLNLFGNNFSGPIPAEIGSISGLEALFLGKNNFLSVIPESLLN 314 (1088)
Q Consensus 235 ~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~ 314 (1088)
+....+......... ...+.....+..+.+.. .+......+|.++..|+.+.+..+. .......|.+
T Consensus 220 ~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~-~~I~~~aF~~ 286 (394)
T 4gt6_A 220 IDNVLYEKSANGDYA-----------LIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSV-VSIGTGAFMN 286 (394)
T ss_dssp SSSCEEEECTTSCEE-----------EEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTC-CEECTTTTTT
T ss_pred ccceeeccccccccc-----------ccccccccccceEEcCC-cceEcccceeeecccccEEeccccc-ceecCccccc
Confidence 011111100000000 00011112222222221 1221223344444555555554322 2223344445
Q ss_pred CCCCcEEEcCCCcCCCchhHhhhcccccceeecCcCcccCCCCCccccCCCCcCEEEccCCccCCCCCccccCCcCccee
Q 001384 315 LSKLEVLDLSSNNFGGEVQKIFGRFTQVKILALHSNSYIDGMNSSGILKLPNISRLDLSHNNFTGPLPVEISQMRSLKFL 394 (1088)
Q Consensus 315 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 394 (1088)
+++|+.+.+. +.++......|.++.+|+.+.+..+ +..+....|.++.+|+.+.|..+ ++..-...|.++++|+.+
T Consensus 287 c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i 362 (394)
T 4gt6_A 287 CPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG--ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNI 362 (394)
T ss_dssp CTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEE
T ss_pred ccccccccCC-CcccccCceeecCCCCcCEEEeCCc--ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEE
Confidence 5555555553 3344444445555555555555433 33344555666777777777544 543445667777777777
Q ss_pred eccccccCCcCCcccCCCCCCcEEEccCCcC
Q 001384 395 ILAHNRFNGSIPAVYGNMPNLQTLDLSFNEL 425 (1088)
Q Consensus 395 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l 425 (1088)
++.++... -..+....+|+.+.+..|.+
T Consensus 363 ~~~~~~~~---~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 363 EYSGSRSQ---WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp EESSCHHH---HHTCBCCCCC----------
T ss_pred EECCceee---hhhhhccCCCCEEEeCCCCE
Confidence 77776543 13455666777777766554
No 407
>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6
Probab=98.93 E-value=9.9e-10 Score=118.66 Aligned_cols=138 Identities=17% Similarity=0.069 Sum_probs=98.5
Q ss_pred CCCccceecccCceEEEEEEeCCCcEEEEEEccccCccchHHHHHHHHHHhCCCCCCCCC-ceeEEeeEEecCCeEEEEE
Q 001384 806 KFSEDRIIGKGGFGTVYRGVLPDGREVAVKKLQREGLEGEREFRAEMEVLSGNGFGWPHP-NLVTLYGWCLDGSEKILVY 884 (1088)
Q Consensus 806 ~~~~~~~LG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~~l~h~-niv~l~~~~~~~~~~~lv~ 884 (1088)
.|.+..+.+.|..+.||++...+|+.+++|+.... ....+..|+++++.+. .+. .+.+++++...++..++||
T Consensus 21 ~~~~~~~~~gg~~~~v~~~~~~~g~~~vlK~~~~~---~~~~~~~E~~~l~~l~---~~~~~vP~~~~~~~~~~~~~~v~ 94 (264)
T 1nd4_A 21 GYDWAQQTIGCSDAAVFRLSAQGRPVLFVKTDLSG---ALNELQDEAARLSWLA---TTGVPCAAVLDVVTEAGRDWLLL 94 (264)
T ss_dssp TCEEEECSCTTSSCEEEEEECTTSCCEEEEEECSC---TTSCHHHHHHHHHHHH---TTTCCBCCEEEEEECSSCEEEEE
T ss_pred CCceEecccCCCCceEEEEecCCCCeEEEEeCCcc---cchhhhHHHHHHHHHH---hCCCCCCeEEEeccCCCCCEEEE
Confidence 34443333466679999998777888999997654 2235677777776543 221 2556888888777889999
Q ss_pred EecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcC---------------------------------------
Q 001384 885 EYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHEC--------------------------------------- 925 (1088)
Q Consensus 885 e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~--------------------------------------- 925 (1088)
||++|.++. ... .+ ...++.++++.++.||+..
T Consensus 95 e~i~G~~l~--~~~---~~---~~~~~~~l~~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (264)
T 1nd4_A 95 GEVPGQDLL--SSH---LA---PAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQGLA 166 (264)
T ss_dssp ECCSSEETT--TSC---CC---HHHHHHHHHHHHHHHTTSCGGGCCCBCCHHHHHHHHHHHHHTTCCCTTSCCGGGTTCC
T ss_pred EecCCcccC--cCc---CC---HhHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHhcCCccchhhhhhccCcc
Confidence 999998884 211 12 2367788888888888752
Q ss_pred ----------------CCCeEecCCCCCCEEEcCCCCEEEeeccccee
Q 001384 926 ----------------YPPIVHRDVKASNVLLDKEGKALVTDFGLARV 957 (1088)
Q Consensus 926 ----------------~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~ 957 (1088)
.+.++|+|++|.||+++.++.+.|+|||.+..
T Consensus 167 ~~~~~~~l~~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~liD~~~a~~ 214 (264)
T 1nd4_A 167 PAELFARLKARMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLGV 214 (264)
T ss_dssp HHHHHHHHHHTCCSSCCEEEECSSCCGGGEEEETTEEEEECCCTTCEE
T ss_pred HHHHHHHHHHhcCCCCCeEEECCCCCCCcEEEECCcEEEEEcchhccc
Confidence 01299999999999998776667999998754
No 408
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.80 E-value=1.2e-09 Score=123.06 Aligned_cols=181 Identities=17% Similarity=0.225 Sum_probs=104.7
Q ss_pred ccCCCCCcEEEccCcccc---------CCCccccCCCCCCCEEeCCCCcCCccCcccccCCCCCcEEEcCCCcCCCchhH
Q 001384 264 VSNCRNLVVLNLFGNNFS---------GPIPAEIGSISGLEALFLGKNNFLSVIPESLLNLSKLEVLDLSSNNFGGEVQK 334 (1088)
Q Consensus 264 l~~l~~L~~L~L~~N~l~---------~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 334 (1088)
+..+++|+.|.+.++... +.+...+..+++|+.|.|++|.-.. ++. +. +++|+.|+|..|.+......
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~-l~~-~~-~~~L~~L~L~~~~l~~~~l~ 211 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS-IGK-KP-RPNLKSLEIISGGLPDSVVE 211 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB-CCS-CB-CTTCSEEEEECSBCCHHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce-ecc-cc-CCCCcEEEEecCCCChHHHH
Confidence 345566777766554321 1233445566778888887663112 222 32 67888888888877655444
Q ss_pred hhh--cccccceeecCcCcccCCCCCccccCCCCcCEEEccCCccCCC-----CCccc--cCCcCcceeeccccccCCcC
Q 001384 335 IFG--RFTQVKILALHSNSYIDGMNSSGILKLPNISRLDLSHNNFTGP-----LPVEI--SQMRSLKFLILAHNRFNGSI 405 (1088)
Q Consensus 335 ~~~--~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-----~p~~l--~~l~~L~~L~L~~N~l~~~~ 405 (1088)
.+. .+++|+.|+|+.+. |...+. +...+ ..+++|+.|+|++|.+++..
T Consensus 212 ~l~~~~lp~L~~L~L~~~~-----------------------~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~ 268 (362)
T 2ra8_A 212 DILGSDLPNLEKLVLYVGV-----------------------EDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVV 268 (362)
T ss_dssp HHHHSBCTTCCEEEEECBC-----------------------GGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHH
T ss_pred HHHHccCCCCcEEEEeccc-----------------------cccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHH
Confidence 443 44555555443210 111100 00111 23567777777777766433
Q ss_pred Cccc---CCCCCCcEEEccCCcCCCC----CCccccCCCCCcEEEccccccccCCCccccC-CCCCCeEEccCCc
Q 001384 406 PAVY---GNMPNLQTLDLSFNELTGP----IPPSIGNLTSLLWLMLANNSLSGEIPGEIGN-CTSLLWLNLSNNK 472 (1088)
Q Consensus 406 p~~~---~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~-l~~L~~L~L~~N~ 472 (1088)
+..+ ..+++|++|+|+.|.+.+. ++..+..+++|+.|+|++|.++...-..|.. + ...+++++|+
T Consensus 269 ~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 269 VEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred HHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 2222 2467888999988888763 4445566788999999999887544333333 2 4668888887
No 409
>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}
Probab=98.78 E-value=1e-08 Score=116.43 Aligned_cols=144 Identities=18% Similarity=0.294 Sum_probs=105.8
Q ss_pred ccceecccCceEEEEEEeCCCcEEEEEEcc--ccC-ccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecC---CeEEE
Q 001384 809 EDRIIGKGGFGTVYRGVLPDGREVAVKKLQ--REG-LEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDG---SEKIL 882 (1088)
Q Consensus 809 ~~~~LG~G~~g~Vy~~~~~~~~~vavK~~~--~~~-~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~---~~~~l 882 (1088)
..+.++.|.++.||++... +..+++|+.. ... ......+.+|+++++.+.. .+..+.++++++.+. +..|+
T Consensus 42 ~~~~l~~G~sn~~y~v~~~-~~~~vlr~~~~p~~~~~~~~~~~~~E~~~l~~L~~--~~vpvP~~~~~~~~~~~~g~~~~ 118 (359)
T 3dxp_A 42 SVEQFKGGQSNPTFKLVTP-GQTYVMRAKPGPKSKLLPSAHAIEREYRVMDALAG--TDVPVAKMYALCEDESVIGRAFY 118 (359)
T ss_dssp EEEECCC-CCSCEEEEECS-SCEEEEECCCC----------CHHHHHHHHHHHTT--SSSCCCCEEEEECCTTTTSSCEE
T ss_pred eEEEcCCcccceEEEEEEC-CceEEEEeCCCCCCCCCCcHHHHHHHHHHHHHhhc--CCCCCCcEEEECCCCCccCCeEE
Confidence 3567899999999999875 4678888876 332 1223467788888876542 245577888887766 45899
Q ss_pred EEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcC-------------------------------------
Q 001384 883 VYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHEC------------------------------------- 925 (1088)
Q Consensus 883 v~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~------------------------------------- 925 (1088)
||||++|..+.+. ....++..++..++.++++.|+.||+..
T Consensus 119 vme~v~G~~l~~~--~~~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (359)
T 3dxp_A 119 IMEFVSGRVLWDQ--SLPGMSPAERTAIYDEMNRVIAAMHTVDYQAIGLGDYGKPGNYFQRQIERWTKQYKLSETESIPA 196 (359)
T ss_dssp EEECCCCBCCCCT--TCTTCCHHHHHHHHHHHHHHHHHHHHSCTTTTTCTTSSCCSCHHHHHHHHHHHHHHHHCCSCCHH
T ss_pred EEEecCCeecCCC--ccccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccCCCCCchHHHHHHHHHHHHhcCCcCChH
Confidence 9999999877542 1224678888999999999999999831
Q ss_pred ------------------CCCeEecCCCCCCEEEcCCCC--EEEeeccccee
Q 001384 926 ------------------YPPIVHRDVKASNVLLDKEGK--ALVTDFGLARV 957 (1088)
Q Consensus 926 ------------------~~~ivH~DLkp~NIll~~~~~--~kl~Dfg~a~~ 957 (1088)
.+.++|||+++.||+++.++. +.|+||+.+..
T Consensus 197 ~~~~~~~l~~~~~~~~~~~~~lvHgD~~~~Nil~~~~~~~v~~viDwe~a~~ 248 (359)
T 3dxp_A 197 MDSLMDWLPQHIPQEDADLTSIVHGDYRLDNLMFHPTEPRVLAVLDWELSTL 248 (359)
T ss_dssp HHHHHHHGGGCCCSTTSSCCEEECSSCSGGGEEECSSSSCEEEECCCTTCEE
T ss_pred HHHHHHHHHhcCCCccCCCceEEeCCCCCCcEEEeCCCCcEEEEECcccccc
Confidence 147999999999999997764 68999998875
No 410
>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A
Probab=98.78 E-value=3.4e-09 Score=117.29 Aligned_cols=188 Identities=20% Similarity=0.229 Sum_probs=122.6
Q ss_pred cceecccCceEEEEEEeCCCcEEEEEEccccCccchHHHHHHHHHHhCCCC--CCCCCceeEEeeEEecCC---eEEEEE
Q 001384 810 DRIIGKGGFGTVYRGVLPDGREVAVKKLQREGLEGEREFRAEMEVLSGNGF--GWPHPNLVTLYGWCLDGS---EKILVY 884 (1088)
Q Consensus 810 ~~~LG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~--~l~h~niv~l~~~~~~~~---~~~lv~ 884 (1088)
.+.++.|....||++. +.+++|+.... .....+.+|.++++.+.. .+..| +++.+..... ..|+||
T Consensus 25 i~~~~~G~~n~v~~v~----~~~vlR~~~~~--~~~~~~~~E~~~l~~l~~~~~v~vP---~~~~~~~~~~~~~~~~~vm 95 (304)
T 3sg8_A 25 IEISGEGNDCIAYEIN----RDFIFKFPKHS--RGSTNLFNEVNILKRIHNKLPLPIP---EVVFTGMPSETYQMSFAGF 95 (304)
T ss_dssp CCEEEECSSEEEEEST----TSEEEEEESSH--HHHHHHHHHHHHHHHHTTSSSSCCC---CEEEECCCCSSCSCSCEEE
T ss_pred eEecCCCCcceEEEEC----CEEEEEecCCc--chHHHHHHHHHHHHHHHhcCCCCCC---ceEeecCCCCCCCcceEEE
Confidence 3568999999999864 56889986543 334578889888865421 12233 3444333332 347899
Q ss_pred EecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcC---------------------------------------
Q 001384 885 EYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHEC--------------------------------------- 925 (1088)
Q Consensus 885 e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~--------------------------------------- 925 (1088)
|+++|.++.+... ..++..++..++.++++.++.||+..
T Consensus 96 ~~i~G~~l~~~~~--~~l~~~~~~~~~~~l~~~la~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 173 (304)
T 3sg8_A 96 TKIKGVPLTPLLL--NNLPKQSQNQAAKDLARFLSELHSINISGFKSNLVLDFREKINEDNKKIKKLLSRELKGPQMKKV 173 (304)
T ss_dssp ECCCCEECCHHHH--HTSCHHHHHHHHHHHHHHHHHHHHSCCTTSCGGGBCCHHHHHHHHHHHHHHHHTTTSCHHHHHHH
T ss_pred cccCCeECCcccc--ccCCHHHHHHHHHHHHHHHHHHHcCCCCCCCccchhhHHHHHHHHHHHHHHHhcccCCcccHHHH
Confidence 9999988865432 24678888899999999999999610
Q ss_pred ----------------CCCeEecCCCCCCEEEcC--CCCEEEeecccceeecCCCCccccc--------------ccccc
Q 001384 926 ----------------YPPIVHRDVKASNVLLDK--EGKALVTDFGLARVVSAGDSHVSTT--------------IAGTV 973 (1088)
Q Consensus 926 ----------------~~~ivH~DLkp~NIll~~--~~~~kl~Dfg~a~~~~~~~~~~~~~--------------~~gt~ 973 (1088)
.+.++|+|++|.||+++. ...+.++||+.+..-.+.. ..... +...+
T Consensus 174 ~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~iD~~~~~~~~~~~-Dl~~~~~~~~~~~~~~~~~~l~~Y 252 (304)
T 3sg8_A 174 DDFYRDILENEIYFKYYPCLIHNDFSSDHILFDTEKNTICGIIDFGDAAISDPDN-DFISLMEDDEEYGMEFVSKILNHY 252 (304)
T ss_dssp HHHHHHHHTCGGGTCCCCEEECSCCCGGGEEEETTTTEEEEECCCTTCEEECTTH-HHHTTCCTTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccCCceeEeCCCCcccEEEeCCCCCEEEEEeCCCCccCChHH-HHHHHHhhccccCHHHHHHHHHHc
Confidence 135899999999999998 4567899999987643210 00000 00000
Q ss_pred cccC-ccccCCCCCCcchhHHHHHHHHHHHHhCCcCCCC
Q 001384 974 GYVA-PEYGQTWQATTKGDVYSFGVLAMELATGRRALEG 1011 (1088)
Q Consensus 974 ~y~a-PE~~~~~~~~~~~DvwslG~~l~elltg~~p~~~ 1011 (1088)
+... |+... ....-.+.|+++.++|.+.+|+.+|..
T Consensus 253 ~~~~~~~~~~--r~~~~~~~~~l~~~~~~~~~g~~~~~~ 289 (304)
T 3sg8_A 253 KHKDIPTVLE--KYRMKEKYWSFEKIIYGKEYGYMDWYE 289 (304)
T ss_dssp TCSCHHHHHH--HHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCCCcHHHHH--HHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 1111 22111 112236899999999999999988753
No 411
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.74 E-value=4e-09 Score=118.63 Aligned_cols=140 Identities=16% Similarity=0.266 Sum_probs=95.1
Q ss_pred hhHhhhcccccceeecCcCcccCCCCCccccCCCCcCEEEccCCccCCCCCcccc--CCcCcceeeccc--cccCCc---
Q 001384 332 VQKIFGRFTQVKILALHSNSYIDGMNSSGILKLPNISRLDLSHNNFTGPLPVEIS--QMRSLKFLILAH--NRFNGS--- 404 (1088)
Q Consensus 332 ~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~--~l~~L~~L~L~~--N~l~~~--- 404 (1088)
+...+..+++|+.|.+++|.... .. .+ .+++|+.|+|..|.++......+. .+++|+.|+|+. |...+.
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l~-l~--~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~ 239 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNLS-IG--KK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDM 239 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTCB-CC--SC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCG
T ss_pred HHHHHhcCCCCcEEEEeCCCCce-ec--cc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhH
Confidence 34555566666666666552111 11 12 378999999999887644333444 689999999863 222211
Q ss_pred --CCccc--CCCCCCcEEEccCCcCCCCCCcccc---CCCCCcEEEccccccccC----CCccccCCCCCCeEEccCCcC
Q 001384 405 --IPAVY--GNMPNLQTLDLSFNELTGPIPPSIG---NLTSLLWLMLANNSLSGE----IPGEIGNCTSLLWLNLSNNKL 473 (1088)
Q Consensus 405 --~p~~~--~~l~~L~~L~L~~N~l~~~~p~~~~---~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~L~~N~l 473 (1088)
+...+ ..+++|++|+|++|.+.+..+..+. .+++|++|+|+.|.+++. ++..+.++++|+.|+|++|.+
T Consensus 240 ~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 240 NVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp GGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred HHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence 11223 3579999999999998754433332 578999999999999863 455556789999999999988
Q ss_pred cc
Q 001384 474 SG 475 (1088)
Q Consensus 474 ~g 475 (1088)
+.
T Consensus 320 ~d 321 (362)
T 2ra8_A 320 SD 321 (362)
T ss_dssp CH
T ss_pred CH
Confidence 74
No 412
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.72 E-value=5.9e-07 Score=102.60 Aligned_cols=100 Identities=11% Similarity=0.082 Sum_probs=56.6
Q ss_pred ccccCCCCcCEEEccCCccCCCCCccccCCcCcceeeccccccCCcCCcccCCCCCCcEEEccCCcCCCCCCccccCCCC
Q 001384 359 SGILKLPNISRLDLSHNNFTGPLPVEISQMRSLKFLILAHNRFNGSIPAVYGNMPNLQTLDLSFNELTGPIPPSIGNLTS 438 (1088)
Q Consensus 359 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 438 (1088)
..|..+.+|+.+.+..+ ++......|.++++|+.+.+.++.++..-..+|.++.+|+.+.|..+ ++..-...|.++++
T Consensus 257 ~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~ 334 (379)
T 4h09_A 257 FLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKA 334 (379)
T ss_dssp TTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred cccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCC
Confidence 33444555555555433 33233345666667777777666666444566777777777777644 44233345667777
Q ss_pred CcEEEccccccccCCCccccCCC
Q 001384 439 LLWLMLANNSLSGEIPGEIGNCT 461 (1088)
Q Consensus 439 L~~L~L~~N~l~~~~p~~l~~l~ 461 (1088)
|+.+.+..+ ++..-...|.+++
T Consensus 335 L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 335 LSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp CCCCCCCTT-CCEECTTTTTTSS
T ss_pred CCEEEECCc-cCEEchhHhhCCC
Confidence 777777544 4423344555553
No 413
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.71 E-value=8.4e-07 Score=101.31 Aligned_cols=111 Identities=13% Similarity=0.122 Sum_probs=79.9
Q ss_pred CccccCCCCcCEEEccCCccCCCCCccccCCcCcceeeccccccCCcCCcccCCCCCCcEEEccCCcCCCCCCccccCCC
Q 001384 358 SSGILKLPNISRLDLSHNNFTGPLPVEISQMRSLKFLILAHNRFNGSIPAVYGNMPNLQTLDLSFNELTGPIPPSIGNLT 437 (1088)
Q Consensus 358 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 437 (1088)
...+.....|+.+.+..+ ++..-...+.++.+|+.+.+..+ ++......|.++++|+.+.+.++.++..-...|.+++
T Consensus 233 ~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~ 310 (379)
T 4h09_A 233 DGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCV 310 (379)
T ss_dssp TTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCT
T ss_pred cccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCC
Confidence 344556667777777665 44344566778888888888654 5535556788889999999988888744456788889
Q ss_pred CCcEEEccccccccCCCccccCCCCCCeEEccCC
Q 001384 438 SLLWLMLANNSLSGEIPGEIGNCTSLLWLNLSNN 471 (1088)
Q Consensus 438 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N 471 (1088)
+|+.+.|..+ ++..-...|.+|++|+.+.+..+
T Consensus 311 ~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 311 KLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp TCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred CCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 9999999765 65344567888999998877544
No 414
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.63 E-value=2.7e-09 Score=113.70 Aligned_cols=158 Identities=18% Similarity=0.134 Sum_probs=85.8
Q ss_pred CCcccCCceeCCCCceeEEecccc---cccccccc-ccccCCccCCeeeCCCCCCCCCcC-ccCCCCCCCcE--EECccc
Q 001384 65 SPCEWPGIICSPDKARVNGLNLTD---WNISGDIF-NNFSALTQLSYLDLSRNTFSGSIP-DDLSSCRSLKY--LNLSHN 137 (1088)
Q Consensus 65 ~~C~W~gv~C~~~~~~v~~L~L~~---~~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~--L~Ls~n 137 (1088)
..|.|.|+.|+.+..+|+.+...+ ..+.+.+. ..+..++. .|..++|.-++.++ +.+...+.|+. ++++.|
T Consensus 76 ~l~~~~g~i~~~~~~ki~~~v~~~~~~~~~~~~l~~~~~~~Lk~--~l~~ryn~~~~~LdLs~l~~dp~L~~~~l~l~~N 153 (267)
T 3rw6_A 76 ALKAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKL--IMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLN 153 (267)
T ss_dssp HHHHTTSSCBCTTSCBCCCEEEECCCCHHHHTSCCHHHHHHHHH--HHHHTEETTTTEEECTTGGGCHHHHHTTCCCCTT
T ss_pred HHHhcCcEEECCCCCEEEEEEecCCCcccccccCCHHHHHHHHH--HHHhccchhccccCHHHcCCCcchhhcCccccCC
Confidence 358899999998777776554433 23334432 22233322 23333333333222 12444444544 555666
Q ss_pred cccC---cc--cCCCCCCCceeecccccccccccC-chhhhcccceEEeccCccCCCCC-CccccCCCCCcEEEccCccc
Q 001384 138 ILSG---DL--NLSGLRSLEILDLSVNRIHGEISF-SFPAICEKLVVANLSLNNLTGRI-DTCFDGCLNLRYLDLSSNNF 210 (1088)
Q Consensus 138 ~l~~---~~--~l~~l~~L~~L~Ls~N~l~~~~~~-~~~~~~~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~Ls~N~l 210 (1088)
.... .. ...++++|+.|+|++|+|++..+. .+...+++|+.|+|++|+|++.. ...+..+ +|++|+|++|.+
T Consensus 154 ~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl 232 (267)
T 3rw6_A 154 RRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSL 232 (267)
T ss_dssp SHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTT
T ss_pred HHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcC
Confidence 4321 11 123566777777777777663321 23345567777777777777651 1223333 788888888887
Q ss_pred cccc----------cccCcccceec
Q 001384 211 RGNI----------WNGLAQLVEFS 225 (1088)
Q Consensus 211 ~~~~----------~~~l~~L~~L~ 225 (1088)
.+.+ ...+++|+.|+
T Consensus 233 ~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 233 CDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp GGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred ccccCcchhHHHHHHHHCcccCeEC
Confidence 7532 34567776654
No 415
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.49 E-value=8.8e-09 Score=104.56 Aligned_cols=118 Identities=12% Similarity=0.086 Sum_probs=75.7
Q ss_pred cccccccCCccCCeeeCCCC-CCCCC----cCccCCCCCCCcEEECccccccCcc------cCCCCCCCceeeccccccc
Q 001384 94 DIFNNFSALTQLSYLDLSRN-TFSGS----IPDDLSSCRSLKYLNLSHNILSGDL------NLSGLRSLEILDLSVNRIH 162 (1088)
Q Consensus 94 ~~~~~l~~l~~L~~L~Ls~n-~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~~------~l~~l~~L~~L~Ls~N~l~ 162 (1088)
.+...+...+.|++|+|++| .|+.. +...+...++|++|+|++|.|++.. .+...++|++|+|++|.|+
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 34556677788888888888 88642 4455667788888888888887422 2445677888888888887
Q ss_pred ccccCchhhhc---ccceEEec--cCccCCCC----CCccccCCCCCcEEEccCcccc
Q 001384 163 GEISFSFPAIC---EKLVVANL--SLNNLTGR----IDTCFDGCLNLRYLDLSSNNFR 211 (1088)
Q Consensus 163 ~~~~~~~~~~~---~~L~~L~L--~~n~l~~~----~~~~l~~l~~L~~L~Ls~N~l~ 211 (1088)
+.....+...+ .+|++|+| ++|.|+.. +...+...++|++|+|++|.+.
T Consensus 107 ~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 107 GSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 66544444332 35666666 55666533 2233444566666666666654
No 416
>3r70_A Aminoglycoside phosphotransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE ADP PE3; 1.80A {Escherichia coli} PDB: 3r6z_A* 3uzr_A* 4dca_A* 3hav_A* 3ham_A*
Probab=98.35 E-value=1.5e-06 Score=96.59 Aligned_cols=140 Identities=21% Similarity=0.213 Sum_probs=101.1
Q ss_pred CCCccceecccCceEEEEEEeCCCcEEEEEEccccCccchHHHHHHHHHHhCCCCCCCC-CceeEEeeEEecCCeEEEEE
Q 001384 806 KFSEDRIIGKGGFGTVYRGVLPDGREVAVKKLQREGLEGEREFRAEMEVLSGNGFGWPH-PNLVTLYGWCLDGSEKILVY 884 (1088)
Q Consensus 806 ~~~~~~~LG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~~l~h-~niv~l~~~~~~~~~~~lv~ 884 (1088)
.+...+.++.|....||++ |+.+++|+.... .....+..|.+++..+.. ... ..+.+++++ +..++||
T Consensus 38 ~i~~v~~l~~G~~n~vy~v----g~~~vlR~~~~~--~~~~~~~~E~~~L~~L~~-~~~~~~vP~v~~~----~~~~lvm 106 (320)
T 3r70_A 38 KINELRYLSSGDDSDTFLC----NEQYVVKVPKRD--SVRISQKRELELYRFLEN-CKLSYQIPAVVYQ----SDRFNIM 106 (320)
T ss_dssp CCSCEEEEEECSSEEEEEE----TTTEEEEEESSH--HHHHHHHHHHHHHHHHTT-SCCSSBCCCEEEE----CSSCEEE
T ss_pred ceEEEEeCCCCCCceEEEE----CCEEEEEeCCcH--HHHHHHHHHHHHHHHHHh-cCCCCCcceEEec----CCcEEEE
Confidence 5666788999999999998 677899987543 223457888877765431 001 123344443 4568999
Q ss_pred EecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCC--------------------------------------
Q 001384 885 EYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECY-------------------------------------- 926 (1088)
Q Consensus 885 e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~-------------------------------------- 926 (1088)
||++|.++.+.. ...++..++..++.++++.++.||+...
T Consensus 107 e~i~G~~l~~~~--~~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (320)
T 3r70_A 107 KYIKGERITYEQ--YHKLSEKEKDALAYDEATFLKELHSIEIDCSVSLFSDALVNKKDKFLQDKKLLISILEKEQLLTDE 184 (320)
T ss_dssp ECCCCBCCCHHH--HTTSCHHHHHHHHHHHHHHHHHHHHSCCCTTSHHHHTTBCCHHHHHHHHHHHHHHHHHHTTCCCHH
T ss_pred eecCCccccccc--cccCCHHHHHHHHHHHHHHHHHHhCCCcccCCCccccccccchHHHHHHHHHHHHHHhhccccccc
Confidence 999999886433 2246777788888899999988885421
Q ss_pred ----------------------CCeEecCCCCCCEEEcCCCCEEEeecccceee
Q 001384 927 ----------------------PPIVHRDVKASNVLLDKEGKALVTDFGLARVV 958 (1088)
Q Consensus 927 ----------------------~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~ 958 (1088)
+.++|+|++|.||+++.+..+.|+||+.+..-
T Consensus 185 ~~~~~~~~~~~~l~~~~~~~~~~~~~H~D~~~~N~l~~~~~~~~~iD~~~~~~~ 238 (320)
T 3r70_A 185 MLEHIETIYENILSNAVLFKYTPCLVHNDFSANNMIFRNNRLFGVIDFGDFNVG 238 (320)
T ss_dssp HHHHHHHHHHHHHTCGGGTCCCCEEECSCCSGGGEEEETTEEEEECCCTTCEEE
T ss_pred chHHHHHHHHHHHhccccccCCceeeECCCCCCcEEEECCceEEEECCcccccC
Confidence 23599999999999998666799999998654
No 417
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.34 E-value=8.8e-08 Score=97.14 Aligned_cols=52 Identities=12% Similarity=0.127 Sum_probs=33.7
Q ss_pred cCccCCCCCCCcEEECccc-cccCcc------cCCCCCCCceeecccccccccccCchh
Q 001384 119 IPDDLSSCRSLKYLNLSHN-ILSGDL------NLSGLRSLEILDLSVNRIHGEISFSFP 170 (1088)
Q Consensus 119 ~p~~l~~l~~L~~L~Ls~n-~l~~~~------~l~~l~~L~~L~Ls~N~l~~~~~~~~~ 170 (1088)
+...+...++|++|+|++| .++... .+...++|++|+|++|.|++.....+.
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~ 86 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALA 86 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHH
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHH
Confidence 3445667788888888888 776421 355667777777777777655444443
No 418
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.26 E-value=1.2e-07 Score=101.00 Aligned_cols=80 Identities=28% Similarity=0.309 Sum_probs=52.6
Q ss_pred cCCCCCcEEEccCccccC--CCccccCCCCCCCEEeCCCCcCCccCcccccCCC--CCcEEEcCCCcCCCchh-------
Q 001384 265 SNCRNLVVLNLFGNNFSG--PIPAEIGSISGLEALFLGKNNFLSVIPESLLNLS--KLEVLDLSSNNFGGEVQ------- 333 (1088)
Q Consensus 265 ~~l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~--~L~~L~L~~N~l~~~~~------- 333 (1088)
.++++|+.|+|++|+|++ .+|..+..+++|+.|+|++|+|.+. ..+..++ +|++|+|++|.+.+..|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 456777777777777776 3445566777788888888877764 3344444 78888888888876433
Q ss_pred Hhhhcccccceee
Q 001384 334 KIFGRFTQVKILA 346 (1088)
Q Consensus 334 ~~~~~l~~L~~L~ 346 (1088)
..+..+++|+.|+
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 3455555555554
No 419
>3d1u_A Putative fructosamine-3-kinase; YP_290396.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 1.85A {Thermobifida fusca} PDB: 3f7w_A
Probab=98.20 E-value=4.3e-06 Score=90.95 Aligned_cols=79 Identities=24% Similarity=0.252 Sum_probs=58.6
Q ss_pred ccceecccCceEEEEEEeCCCcEEEEEEccccCccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeEEEEEEecC
Q 001384 809 EDRIIGKGGFGTVYRGVLPDGREVAVKKLQREGLEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEKILVYEYME 888 (1088)
Q Consensus 809 ~~~~LG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~~lv~e~~~ 888 (1088)
..+.|+.|.++.||++...+|+.++||+...........+..|++.++.+... ....+.+++++. ..++||||++
T Consensus 19 ~~~~l~gG~~n~vy~v~~~dG~~~vvK~~~~~~~~~~~~~~~E~~~L~~L~~~-~~v~vP~v~~~~----~~~lvme~l~ 93 (288)
T 3d1u_A 19 AVAERGHSHRWHLYRVELADGTPLFVKALPDDAPALDGLFRAEALGLDWLGRS-FGSPVPQVAGWD----DRTLAMEWVD 93 (288)
T ss_dssp EEEEEEEETTEEEEEEEETTSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCS-TTCCSCCEEEEE----TTEEEEECCC
T ss_pred ceeeeCCcchhheEEEEeCCCCeEEEEecCCCCcchhHHHHHHHHHHHHHHhc-CCCCcCeEEEec----CcEEEEEecc
Confidence 35779999999999999888999999997644333346788999998874311 113466677653 3689999999
Q ss_pred CCCH
Q 001384 889 GGSL 892 (1088)
Q Consensus 889 ~gsL 892 (1088)
++++
T Consensus 94 g~~~ 97 (288)
T 3d1u_A 94 ERPP 97 (288)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 9874
No 420
>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*
Probab=98.15 E-value=1.1e-05 Score=87.10 Aligned_cols=137 Identities=19% Similarity=0.133 Sum_probs=98.0
Q ss_pred ceecccCce-EEEEEEeC-CCcEEEEEEccccCccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeEEEEEEecC
Q 001384 811 RIIGKGGFG-TVYRGVLP-DGREVAVKKLQREGLEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEKILVYEYME 888 (1088)
Q Consensus 811 ~~LG~G~~g-~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~~lv~e~~~ 888 (1088)
+.+..|..| .||+.... ++..+++|+-... ....+..|.+.++.+...+. +.++++++.+++..++|||+++
T Consensus 30 ~~~~~G~S~~~v~rl~~~~~~~~~~lk~~~~~---~~~~~~~E~~~l~~l~~~vP---VP~v~~~~~~~~~~~lvme~l~ 103 (272)
T 4gkh_A 30 ARDNVGQSGATIYRLYGKPNAPELFLKHGKGS---VANDVTDEMVRLNWLTAFMP---LPTIKHFIRTPDDAWLLTTAIP 103 (272)
T ss_dssp EEEECSSSSCEEEEEECCTTCCCEEEEEEETH---HHHHHHHHHHHHHHHTTTSC---CCCEEEEEEETTEEEEEEECCC
T ss_pred EEccCCCcCCeEEEEEecCCCeEEEEEECCCC---CHhHHHHHHHHHHHhccCCC---cCeEEEEEEECCeEEEEEEeeC
Confidence 345556555 69998865 4677899986543 34567888888876553333 5567777888889999999999
Q ss_pred CCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcC-------------------------------------------
Q 001384 889 GGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHEC------------------------------------------- 925 (1088)
Q Consensus 889 ~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~------------------------------------------- 925 (1088)
|.++.+..... ..+...++.+++..++.||+..
T Consensus 104 G~~~~~~~~~~----~~~~~~~~~~l~~~L~~Lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (272)
T 4gkh_A 104 GKTAFQVLEEY----PDSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDASDFDDERNGWPVEQV 179 (272)
T ss_dssp SEEHHHHHHHC----GGGHHHHHHHHHHHHHHHHTSCGGGCCBBCCHHHHHHHHHHHHHTTCCCGGGCCGGGTTCCHHHH
T ss_pred CccccccccCC----HHHHHHHHHHHHHHHHHhcCCCcccCCcCcccccchhhHHHHHHHhhhhhhhccccccchHHHHH
Confidence 98888765432 2233456677777777777520
Q ss_pred ------------CCCeEecCCCCCCEEEcCCCCEEEeeccccee
Q 001384 926 ------------YPPIVHRDVKASNVLLDKEGKALVTDFGLARV 957 (1088)
Q Consensus 926 ------------~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~ 957 (1088)
.+.++|+|+.+.||+++.++.+-|+||+.+..
T Consensus 180 ~~~l~~~~~~~~~~~l~HGDl~~~Nil~~~~~~~~viDwe~a~~ 223 (272)
T 4gkh_A 180 WKEMHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVGI 223 (272)
T ss_dssp HHHHHTTCCCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCEE
T ss_pred HHHHHhcccccCCcEEEcCCCCCCeEEEECCeEEEEEECccccc
Confidence 02389999999999999877677999998764
No 421
>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*
Probab=98.12 E-value=1.1e-05 Score=88.86 Aligned_cols=139 Identities=16% Similarity=0.116 Sum_probs=94.6
Q ss_pred cceecccCceEEEEEEeCCCcEEEEEEccccCccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEe-cCCeEEEEEEecC
Q 001384 810 DRIIGKGGFGTVYRGVLPDGREVAVKKLQREGLEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCL-DGSEKILVYEYME 888 (1088)
Q Consensus 810 ~~~LG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~-~~~~~~lv~e~~~ 888 (1088)
.+.++.|....||+. |+.+++|+.... .....+..|.+++..+..... -.+.+.+.+.. ..+..++||||++
T Consensus 24 v~~l~~G~~n~v~~v----g~~~VlR~~~~~--~~~~~~~~E~~~L~~L~~~~~-v~VP~~~~~~~~~~g~~~~v~e~i~ 96 (306)
T 3tdw_A 24 VESLGEGFRNYAILV----NGDWVFRFPKSQ--QGADELNKEIQLLPLLVGCVK-VNIPQYVYIGKRSDGNPFVGYRKVQ 96 (306)
T ss_dssp EEEEEECSSEEEEEE----TTTEEEEEESSH--HHHHHHHHHHHHHHHHTTTCS-SBCCCEEEEEECTTSCEEEEEECCC
T ss_pred eeecCCCcceeEEEE----CCEEEEEecCCc--hHHHHHHHHHHHHHHHHhcCC-CCCCCeEeecccCCCceEEEEeccC
Confidence 356888888999998 567889985432 334578899998887542111 12445555553 4556789999999
Q ss_pred CCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcC-------------------------------------------
Q 001384 889 GGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHEC------------------------------------------- 925 (1088)
Q Consensus 889 ~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~------------------------------------------- 925 (1088)
|.++.+..- ..++..+...++.++++.|+.||+..
T Consensus 97 G~~l~~~~~--~~l~~~~~~~~~~~lg~~La~LH~~~~~~~~~~g~p~~~w~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 174 (306)
T 3tdw_A 97 GQILGEDGM--AVLPDDAKDRLALQLAEFMNELSAFPVETAISAGVPVTNLKNKILLLSEAVEDQVFPLLDESLRDYLTL 174 (306)
T ss_dssp SEECHHHHH--TTSCHHHHHHHHHHHHHHHHHHHHSCHHHHHHTTCCBCCHHHHHHHHHHHHHHHTGGGSCHHHHHHHHH
T ss_pred CeECchhhh--hhCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCChHHHHHHHHHHHHHHHHhcccccchhhHHHHHH
Confidence 988876321 22455566666666666666666531
Q ss_pred --------------CCCeEecCCCCCCEEEcC---CCCE-EEeeccccee
Q 001384 926 --------------YPPIVHRDVKASNVLLDK---EGKA-LVTDFGLARV 957 (1088)
Q Consensus 926 --------------~~~ivH~DLkp~NIll~~---~~~~-kl~Dfg~a~~ 957 (1088)
.+.++|+|+++.||+++. ++.+ .|+||+.+..
T Consensus 175 ~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~~~iD~~~a~~ 224 (306)
T 3tdw_A 175 RFQSYMTHPVYTRYTPRLIHGDLSPDHFLTNLNSRQTPLTGIIDFGDAAI 224 (306)
T ss_dssp HHHHHHHCHHHHCCCCEEECSCCSGGGEEECTTCSSCCEEEECCCTTCEE
T ss_pred HHHHHHhCcccccCCCeeEeCCCCcccEEEecCCCCCceEEEEehhhcCC
Confidence 125699999999999987 4565 7999998865
No 422
>3ovc_A Hygromycin-B 4-O-kinase; aminoglycoside phosphotransferase, structural genomics, PSI- protein structure initiative; HET: HY0 PE4; 1.95A {Escherichia coli} PDB: 3tyk_A*
Probab=97.92 E-value=3.3e-05 Score=87.09 Aligned_cols=143 Identities=18% Similarity=0.190 Sum_probs=86.6
Q ss_pred CCccceecccCceEEEEEEeCCCcEEEEEEccccCccchHHHHHHHHHHhCCCC-CCCCCceeEEeeEEecC-CeEEEEE
Q 001384 807 FSEDRIIGKGGFGTVYRGVLPDGREVAVKKLQREGLEGEREFRAEMEVLSGNGF-GWPHPNLVTLYGWCLDG-SEKILVY 884 (1088)
Q Consensus 807 ~~~~~~LG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~-~l~h~niv~l~~~~~~~-~~~~lv~ 884 (1088)
....+.++.|....||+... +++.+++|+.... ..+..|..++..+.. .+. +.++++++... +..|+||
T Consensus 43 ~~~i~~l~gG~~n~~y~v~~-~g~~~vlK~~~~~-----~~~~~E~~~l~~L~~~gvp---vP~vl~~~~~~~g~~~lv~ 113 (362)
T 3ovc_A 43 VSDLMQLSEGEESRAFSFDV-GGRGYVLRVNSCA-----DGFYKDRYVYRHFASAALP---IPEVLDIGEFSESLTYCIS 113 (362)
T ss_dssp CEEEEEEEECSSEEEEEEEE-TTEEEEEEEESCC-----HHHHHHHHHHHHHCCSSSC---CCCEEEEEESSSSCEEEEE
T ss_pred CceEEECCCCCcceEEEEEE-CCcEEEEEeCCch-----hhHHHHHHHHHHHHhcCCC---CceEEEeccCCCCCeEEEE
Confidence 34457789999999999886 5788999987543 257777777765432 123 34455555544 5689999
Q ss_pred EecCCCCHHH---------------H---HhhcC-----C------------CCHHHHH---------------------
Q 001384 885 EYMEGGSLED---------------I---ISDRT-----R------------LTWRRRL--------------------- 908 (1088)
Q Consensus 885 e~~~~gsL~~---------------~---l~~~~-----~------------l~~~~~~--------------------- 908 (1088)
||++|.++.+ . ++... . -+|.+.+
T Consensus 114 e~l~G~~l~~l~~~~~~~~~~~lg~~La~LH~~~~~~~~gl~~~~~~~~~~~~~w~~~~~~~~~~~l~~~~~~~~~~~~~ 193 (362)
T 3ovc_A 114 RRAQGVTLQDLPETELPAVLQPVAEAMDAIAAADLSQTSGFGPFGPQGIGQYTTWRDFICAIADPHVYHWQTVMDDTVSA 193 (362)
T ss_dssp ECCCSEETTTSCGGGSGGGHHHHHHHHHHHHHCCCTTCBCEEEECTTSBEEESSHHHHHHGGGCTTTCCHHHHCCTTTHH
T ss_pred EecCCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCccccCccCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 9999765531 1 11110 0 0011110
Q ss_pred HHHHHHHHHHHHHHhcC-CCCeEecCCCCCCEEEcCCCCEEEeecccceee
Q 001384 909 DIAIDVARALVFLHHEC-YPPIVHRDVKASNVLLDKEGKALVTDFGLARVV 958 (1088)
Q Consensus 909 ~i~~qi~~~L~yLH~~~-~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~ 958 (1088)
.....+...++++.... .+.++|+|+.+.||+++.++.+.|+||+.+..-
T Consensus 194 ~~~~~~~~l~~~l~~lp~~~~l~HgDl~~~Nil~~~~~~~~viD~~~~~~g 244 (362)
T 3ovc_A 194 SVAQALDELMLWAEDCPEVRHLVHADFGSNNVLTDNGRITAVIDWSEAMFG 244 (362)
T ss_dssp HHHHHHHHHHHHGGGCCCCCEEECSSCSSTTEEEETTEEEEECCCTTCEEE
T ss_pred cchHHHHHHHHHHhhCCCCcEEEeCCCCCCeEEEeCCCEEEEECCcccccC
Confidence 01111122222222110 146899999999999987777889999988753
No 423
>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*
Probab=97.89 E-value=9.1e-06 Score=91.79 Aligned_cols=82 Identities=10% Similarity=0.010 Sum_probs=51.2
Q ss_pred cee-cccCceEEEEEEeC-------CCcEEEEEEccccC---ccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecC--
Q 001384 811 RII-GKGGFGTVYRGVLP-------DGREVAVKKLQREG---LEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDG-- 877 (1088)
Q Consensus 811 ~~L-G~G~~g~Vy~~~~~-------~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~-- 877 (1088)
+.| +.|....+|+.... +++.+++|+..... ......+..|++++..+... ..-.+.++++++.+.
T Consensus 26 ~~l~~~G~~n~~y~v~~~~~~~~~~~~~~~vlR~~~~~~~~~~~~~~~~~~E~~~l~~L~~~-~~vpvP~v~~~~~~~~~ 104 (357)
T 3ats_A 26 SGVDSTGMSSETIILTARWQQDGRSIQQKLVARVAPAAEDVPVFPTYRLDHQFEVIRLVGEL-TDVPVPRVRWIETTGDV 104 (357)
T ss_dssp EEECTTSSEEEEEEEEEEEEETTEEEEEEEEEEECCCGGGCCSSSCCCHHHHHHHHHHHHHH-CCSCCCCEEEEECSSTT
T ss_pred EECCCCCccceEEEEEEecccCCCCCCceEEEEeCCCCCccccCchhHHHHHHHHHHHHhhc-CCCCCCcEEEEccCCCc
Confidence 567 88889999998764 26788999876532 11123456676666653210 012345566666554
Q ss_pred -CeEEEEEEecCCCCHH
Q 001384 878 -SEKILVYEYMEGGSLE 893 (1088)
Q Consensus 878 -~~~~lv~e~~~~gsL~ 893 (1088)
+..++||||++|.++.
T Consensus 105 ~g~~~~v~e~l~G~~l~ 121 (357)
T 3ats_A 105 LGTPFFLMDYVEGVVPP 121 (357)
T ss_dssp TSSCEEEEECCCCBCCC
T ss_pred cCCceEEEEecCCCChh
Confidence 3568999999986653
No 424
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.78 E-value=6.9e-06 Score=80.93 Aligned_cols=89 Identities=13% Similarity=0.119 Sum_probs=48.3
Q ss_pred ccCCeeeCCCCCCCCCcCccCCCCCCCcEEECccccccCcccCCCCCCCceeecccccccccccCchhh---hcccceEE
Q 001384 103 TQLSYLDLSRNTFSGSIPDDLSSCRSLKYLNLSHNILSGDLNLSGLRSLEILDLSVNRIHGEISFSFPA---ICEKLVVA 179 (1088)
Q Consensus 103 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~---~~~~L~~L 179 (1088)
..|++|||+++.|+...-..+.++++|++|+|++|. .|++..-..+.. .+++|++|
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~---------------------~ItD~gL~~L~~~~~~~~~L~~L 119 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH---------------------YIEDGCLERLSQLENLQKSMLEM 119 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCT---------------------TCCHHHHHHHHTCHHHHHHCCEE
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCC---------------------ccCHHHHHHHHhcccccCCCCEE
Confidence 356666666666665444455566666666666653 133322222222 12345555
Q ss_pred eccCc-cCCCCCCccccCCCCCcEEEccCcc-ccc
Q 001384 180 NLSLN-NLTGRIDTCFDGCLNLRYLDLSSNN-FRG 212 (1088)
Q Consensus 180 ~L~~n-~l~~~~~~~l~~l~~L~~L~Ls~N~-l~~ 212 (1088)
+|++| +|+...-..+..+++|++|+|+++. +++
T Consensus 120 ~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 120 EIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp EEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred EcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCc
Confidence 55554 2444433456677888888888874 554
No 425
>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*
Probab=97.60 E-value=0.00013 Score=83.42 Aligned_cols=77 Identities=18% Similarity=0.138 Sum_probs=47.4
Q ss_pred cceecccCceEEEEEEeC-CCcEEEEEEccccCc-------cchHHHHHHHHHHhCCCCCCCCCc-eeEEeeEEecCCeE
Q 001384 810 DRIIGKGGFGTVYRGVLP-DGREVAVKKLQREGL-------EGEREFRAEMEVLSGNGFGWPHPN-LVTLYGWCLDGSEK 880 (1088)
Q Consensus 810 ~~~LG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~-------~~~~~~~~E~~~l~~~~~~l~h~n-iv~l~~~~~~~~~~ 880 (1088)
.+.+|.|..+.||++... +++.++||....... .....+..|.+++..+.. ..+. +.+++.+ +....
T Consensus 35 ~~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~--~~~~~vP~~~~~--d~~~~ 110 (397)
T 2olc_A 35 CQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGE--HVPHLVPRVFYS--DTEMA 110 (397)
T ss_dssp EEECCSSSSEEEEEEEC----CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHT--TCGGGSCCEEEE--ETTTT
T ss_pred EEECCCCceEEEEEEEECCCCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhh--hCCCCcCeEEEE--cCCcc
Confidence 467999999999999864 468899998653211 122345677777765321 1133 3345544 34456
Q ss_pred EEEEEecCCC
Q 001384 881 ILVYEYMEGG 890 (1088)
Q Consensus 881 ~lv~e~~~~g 890 (1088)
++||||+++.
T Consensus 111 ~lvmE~l~g~ 120 (397)
T 2olc_A 111 VTVMEDLSHL 120 (397)
T ss_dssp EEEECCCTTS
T ss_pred EEEEEeCCCc
Confidence 8999999764
No 426
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.58 E-value=5.3e-06 Score=83.36 Aligned_cols=116 Identities=14% Similarity=0.127 Sum_probs=76.1
Q ss_pred ccccccCCccCCeeeCCCC-CCCC----CcCccCCCCCCCcEEECccccccCcc------cCCCCCCCceeecccccccc
Q 001384 95 IFNNFSALTQLSYLDLSRN-TFSG----SIPDDLSSCRSLKYLNLSHNILSGDL------NLSGLRSLEILDLSVNRIHG 163 (1088)
Q Consensus 95 ~~~~l~~l~~L~~L~Ls~n-~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~~------~l~~l~~L~~L~Ls~N~l~~ 163 (1088)
+...+.+-+.|++|+|++| +|.. .+.+.+..-+.|+.|+|++|.|.+.. .+..-+.|++|+|++|.|++
T Consensus 33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~ 112 (197)
T 1pgv_A 33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP 112 (197)
T ss_dssp HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence 3444556688888999885 7754 24556677788888888888887432 24456788888888888887
Q ss_pred cccCchhhhc---ccceEEeccCc---cCCC----CCCccccCCCCCcEEEccCccc
Q 001384 164 EISFSFPAIC---EKLVVANLSLN---NLTG----RIDTCFDGCLNLRYLDLSSNNF 210 (1088)
Q Consensus 164 ~~~~~~~~~~---~~L~~L~L~~n---~l~~----~~~~~l~~l~~L~~L~Ls~N~l 210 (1088)
.....+...+ ..|++|+|++| .+.. .+...+...+.|+.|+++.|.+
T Consensus 113 ~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 113 ELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 7666665543 34777777654 2232 1334455566677777766654
No 427
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.57 E-value=3.4e-05 Score=76.01 Aligned_cols=34 Identities=9% Similarity=0.015 Sum_probs=14.7
Q ss_pred CCcEEEccCccccCCCccccCCCCCCCEEeCCCC
Q 001384 269 NLVVLNLFGNNFSGPIPAEIGSISGLEALFLGKN 302 (1088)
Q Consensus 269 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 302 (1088)
+|++||++++.++...-..+..+++|++|+|++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C 95 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC 95 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence 3444444444444333333344444444444444
No 428
>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}
Probab=97.54 E-value=0.00049 Score=74.85 Aligned_cols=78 Identities=28% Similarity=0.366 Sum_probs=55.6
Q ss_pred CCccceecccCceEEEEEEeCCCcEEEEEEccccCccchHHHHHHHHHHhCCCC--CCCCCceeEEeeEEecCCeEEEEE
Q 001384 807 FSEDRIIGKGGFGTVYRGVLPDGREVAVKKLQREGLEGEREFRAEMEVLSGNGF--GWPHPNLVTLYGWCLDGSEKILVY 884 (1088)
Q Consensus 807 ~~~~~~LG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~--~l~h~niv~l~~~~~~~~~~~lv~ 884 (1088)
....+.+|.|..+.||+.+..+|+.|+||+...........+..|.+.|+.+.. ....|. ++++. ..++||
T Consensus 17 v~~v~~~g~G~~~~vyrv~l~DG~~~~vK~~~~~~~~~~~~~~~Ea~~L~~L~~~~~vpvP~---v~~~~----~~~lv~ 89 (288)
T 3f7w_A 17 VAAVAERGHSHRWHLYRVELADGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQ---VAGWD----DRTLAM 89 (288)
T ss_dssp EEEEEEEEEETTEEEEEEEETTSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCC---EEEEE----TTEEEE
T ss_pred eEEEEecCCCCCeEEEEEEECCCCEEEEEEeCCCCcchhhHHHHHHHHHHHHHhhCCCCcce---EEecc----CceEEE
Confidence 444577999999999999999999999999776544445567888887775432 233343 34432 247899
Q ss_pred EecCCCC
Q 001384 885 EYMEGGS 891 (1088)
Q Consensus 885 e~~~~gs 891 (1088)
||++++.
T Consensus 90 e~l~~~~ 96 (288)
T 3f7w_A 90 EWVDERP 96 (288)
T ss_dssp ECCCCCC
T ss_pred EeecccC
Confidence 9998764
No 429
>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}
Probab=97.54 E-value=0.00014 Score=84.04 Aligned_cols=77 Identities=13% Similarity=0.127 Sum_probs=47.4
Q ss_pred CCeEecCCCCCCEEEcCCCCEEEeecccceeecCCCCcccccc-cccccccCccccCCC---CCCcchhHHHHHHHHHHH
Q 001384 927 PPIVHRDVKASNVLLDKEGKALVTDFGLARVVSAGDSHVSTTI-AGTVGYVAPEYGQTW---QATTKGDVYSFGVLAMEL 1002 (1088)
Q Consensus 927 ~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~-~gt~~y~aPE~~~~~---~~~~~~DvwslG~~l~el 1002 (1088)
+.++|||+++.||+++.++ ++++||+.+..-.+.- ...... .-...|.+|+..... ......++......+|+.
T Consensus 232 ~~liHGDl~~~Nil~~~~~-~~lID~e~a~~G~p~~-Dla~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (420)
T 2pyw_A 232 QALIHGDLHTGSVMVTQDS-TQVIDPEFSFYGPMGF-DIGAYLGNLILAFFAQDGHATQENDRKEYKQWILRTIEQTWNL 309 (420)
T ss_dssp CEEECSCCSGGGEEECSSC-EEECCCTTCEEECHHH-HHHHHHHHHHHHHHHGGGGCCSSCCSHHHHHHHHHHHHHHHHH
T ss_pred CeEEecCCCCCcEEEeCCC-CEEEeCcccccCchHH-HHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHHHHHHH
Confidence 3899999999999998776 9999999887532110 000000 012346666654321 112335556778888877
Q ss_pred HhC
Q 001384 1003 ATG 1005 (1088)
Q Consensus 1003 ltg 1005 (1088)
+++
T Consensus 310 y~~ 312 (420)
T 2pyw_A 310 FNK 312 (420)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 430
>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}
Probab=97.51 E-value=0.00061 Score=76.09 Aligned_cols=142 Identities=20% Similarity=0.284 Sum_probs=79.8
Q ss_pred ceecccCceEEEEEEeCCCcEEEEEEccccCccchHHHHHHHHHHhCCCC-CCCCCceeEEe-e--EEecCCeEEEEEEe
Q 001384 811 RIIGKGGFGTVYRGVLPDGREVAVKKLQREGLEGEREFRAEMEVLSGNGF-GWPHPNLVTLY-G--WCLDGSEKILVYEY 886 (1088)
Q Consensus 811 ~~LG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~-~l~h~niv~l~-~--~~~~~~~~~lv~e~ 886 (1088)
+.|+.|..+.||++...+| .+++|+.... ..++..|.+++..+.. .+..|.++... + +....+..++||||
T Consensus 38 ~~l~gG~~n~~~~v~~~~~-~~vlk~~~~~----~~~~~~e~~~l~~L~~~g~~vp~~~~~~~g~~~~~~~~~~~~l~~~ 112 (346)
T 2q83_A 38 DVIQGNQMALVWKVHTDSG-AVCLKRIHRP----EKKALFSIFAQDYLAKKGMNVPGILPNKKGSLYSKHGSFLFVVYDW 112 (346)
T ss_dssp EECC----CEEEEEEETTE-EEEEEEECSC----HHHHHHHHHHHHHHHHHTCSSCCBCCCTTSCSCEEETTEEEEEEEC
T ss_pred eeccccccCcEEEEEeCCC-CEEEEecCCC----HHHHHHHHHHHHHHHHcCCCCCceeecCCCCEEEEECCEEEEEEEe
Confidence 4566677899999987654 5899988753 1233333333332110 13445555421 1 12345678899999
Q ss_pred cCCCCHH--------------HHHhhc-C----C---------CCHHHH-------------------------------
Q 001384 887 MEGGSLE--------------DIISDR-T----R---------LTWRRR------------------------------- 907 (1088)
Q Consensus 887 ~~~gsL~--------------~~l~~~-~----~---------l~~~~~------------------------------- 907 (1088)
++|.++. ..+|.. . + -.|...
T Consensus 113 i~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 192 (346)
T 2q83_A 113 IEGRPFELTVKQDLEFIMKGLADFHTASVGYQPPNGVPIFTKLGRWPNHYTKRCKQMETWKLMAEAEKEDPFSQLYLQEI 192 (346)
T ss_dssp CCCBCCCTTSHHHHHHHHHHHHHHHHHHTTCCCCTTCCCCBCTTCHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred ecCccCCCCCHHHHHHHHHHHHHHHHhCCCCCCCccchhcccccchHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHH
Confidence 9986531 111210 0 0 122211
Q ss_pred HHHHHHHHHHHHHHHh----------cCCCCeEecCCCCCCEEEcCCCCEEEeeccccee
Q 001384 908 LDIAIDVARALVFLHH----------ECYPPIVHRDVKASNVLLDKEGKALVTDFGLARV 957 (1088)
Q Consensus 908 ~~i~~qi~~~L~yLH~----------~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~ 957 (1088)
..+..++..++++|+. ...+.++|+|+++.||+++.++.+.|+||+.+..
T Consensus 193 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~lIDfe~a~~ 252 (346)
T 2q83_A 193 DGFIEDGLRIKDRLLQSTYVPWTEQLKKSPNLCHQDYGTGNTLLGENEQIWVIDLDTVSF 252 (346)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHSCCEECSSCSTTSEEECGGGCEEECCCTTCEE
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHhccccCceecCCCCcccEEEeCCCcEEEEehhhccc
Confidence 1112234456667763 0124899999999999998888999999997753
No 431
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.37 E-value=4.9e-05 Score=76.35 Aligned_cols=70 Identities=17% Similarity=0.176 Sum_probs=44.8
Q ss_pred cCCCCCCCcEEECccc-cccCcc------cCCCCCCCceeecccccccccccCchhhhcccceEEeccCccCCCCCCccc
Q 001384 122 DLSSCRSLKYLNLSHN-ILSGDL------NLSGLRSLEILDLSVNRIHGEISFSFPAICEKLVVANLSLNNLTGRIDTCF 194 (1088)
Q Consensus 122 ~l~~l~~L~~L~Ls~n-~l~~~~------~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l 194 (1088)
.+..-+.|++|+|++| .|.... .+..-+.|++|+|++|+|++.....+... +
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~a---------------------L 94 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIEL---------------------I 94 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHH---------------------H
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHH---------------------H
Confidence 3455677888888875 776421 35566778888888888876666555543 3
Q ss_pred cCCCCCcEEEccCccccc
Q 001384 195 DGCLNLRYLDLSSNNFRG 212 (1088)
Q Consensus 195 ~~l~~L~~L~Ls~N~l~~ 212 (1088)
...+.|++|+|++|.|++
T Consensus 95 ~~N~tL~~L~L~~N~Ig~ 112 (197)
T 1pgv_A 95 ETSPSLRVLNVESNFLTP 112 (197)
T ss_dssp HHCSSCCEEECCSSBCCH
T ss_pred hcCCccCeEecCCCcCCH
Confidence 344556666666666654
No 432
>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}
Probab=97.36 E-value=0.00046 Score=75.51 Aligned_cols=138 Identities=17% Similarity=0.180 Sum_probs=88.5
Q ss_pred cceecccCceEEEEEEeCCCcEEEEEEccccCccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeEEEEEEecCC
Q 001384 810 DRIIGKGGFGTVYRGVLPDGREVAVKKLQREGLEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEKILVYEYMEG 889 (1088)
Q Consensus 810 ~~~LG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~~lv~e~~~~ 889 (1088)
.+.|+.|....+|+... +++.+++|+.... ....+..|.+.++.+... ....+.+++++....+..++||||+++
T Consensus 41 ~~~l~gG~~n~~y~v~~-~~~~~vlK~~~~~---~~~~~~~E~~~L~~L~~~-~~v~VP~vl~~~~~~g~~~lvme~l~G 115 (312)
T 3jr1_A 41 KEKLYSGEMNEIWLIND-EVQTVFVKINERS---YRSMFRAEADQLALLAKT-NSINVPLVYGIGNSQGHSFLLLEALNK 115 (312)
T ss_dssp EEEECCSSSSEEEEEES-SSCEEEEEEEEGG---GHHHHHHHHHHHHHHHHT-TSSBCCCEEEEEECSSEEEEEEECCCC
T ss_pred eEEeCCccceeeeEEEE-CCCeEEEEeCCcc---cHHHHHHHHHHHHHHHhh-CCCCcceEEEEeecCCceEEEEEeccC
Confidence 46789999999999987 4678889987643 345678887777654311 124566777777777889999999998
Q ss_pred CCHH--------H---HHhhcC---C-------------------CCHHHHH---HHH----------------HHHHHH
Q 001384 890 GSLE--------D---IISDRT---R-------------------LTWRRRL---DIA----------------IDVARA 917 (1088)
Q Consensus 890 gsL~--------~---~l~~~~---~-------------------l~~~~~~---~i~----------------~qi~~~ 917 (1088)
..+. + .+|... . -+|.+.. ++. .+++..
T Consensus 116 ~~~~~~~~~~lG~~LA~LH~~~~~~~fG~~~~~~~G~~~q~n~w~~~W~~f~~~~Rl~~~l~~a~~~g~~~~~~~~l~~~ 195 (312)
T 3jr1_A 116 SKNKQSSFTIFAEKIAQLHQIQGPDKYGLDFDTWLGPIYQPNDWQTSWAKFFSENRIGWQLQICKEKGLIFGNIDLIVQI 195 (312)
T ss_dssp CCCCTTHHHHHHHHHHHHHHCCCCSSBBCSSCEEETTEEECCCCBSCHHHHHHHHTHHHHHHHHHHHTCCCSCHHHHHHH
T ss_pred CCCCchhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCcCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 7541 1 223211 0 1343321 111 111111
Q ss_pred -HHHHHh-cCCCCeEecCCCCCCEEEcCCCCEEEeecc
Q 001384 918 -LVFLHH-ECYPPIVHRDVKASNVLLDKEGKALVTDFG 953 (1088)
Q Consensus 918 -L~yLH~-~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg 953 (1088)
...|.. ...+.+||+|+.+.||+++.++ +.|+|++
T Consensus 196 l~~~L~~~~~~~~l~HgD~~~~N~l~~~~~-~~~iD~~ 232 (312)
T 3jr1_A 196 VADTLSKHNPKPSILHGNLWIENCIQVDDK-IFVCNPA 232 (312)
T ss_dssp HHHHHTTCCCCCEEECSSCSGGGEEEETTE-EEECSCC
T ss_pred HHHHhccCCCCceeEeCCCCcCcEeecCCC-eEEEcCc
Confidence 223321 1235899999999999999887 8899974
No 433
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.95 E-value=0.00098 Score=62.51 Aligned_cols=57 Identities=21% Similarity=0.356 Sum_probs=41.6
Q ss_pred EEEccCCccc-ccCCccccCCccCcEEEccccccCCcCCcccccccccceeeccCCCCcc
Q 001384 613 VLNLTRNNFS-GEIPSEFGNIKCLQNLDLSYNNFSGPFPASFNNLTELSKLNISYNPLVS 671 (1088)
Q Consensus 613 ~l~l~~N~l~-~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~l~~L~~l~l~~N~l~~ 671 (1088)
.++.++++|+ ..+|..+. .+|+.|||++|+|+...+..|..+++|+.|+|++|+|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 4556666664 35665433 468899999999985555667889999999999999954
No 434
>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}
Probab=96.77 E-value=0.0065 Score=67.35 Aligned_cols=32 Identities=38% Similarity=0.405 Sum_probs=27.8
Q ss_pred CCeEecCCCCCCEEEcCC----CCEEEeecccceee
Q 001384 927 PPIVHRDVKASNVLLDKE----GKALVTDFGLARVV 958 (1088)
Q Consensus 927 ~~ivH~DLkp~NIll~~~----~~~kl~Dfg~a~~~ 958 (1088)
+.++|||+.+.||+++.+ +.+.|+||+.+..-
T Consensus 183 ~~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~a~~G 218 (333)
T 3csv_A 183 MVFVHRDFHAQNLLWLPEREGLARVGVIDFQDAKLG 218 (333)
T ss_dssp CEEECSCCSGGGEEECTTSCGGGGEEECCCTTCEEE
T ss_pred CeeEeCCcCcccEEeccCcCCCCCeEEEeCCCcCcC
Confidence 479999999999999875 67999999988753
No 435
>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6
Probab=96.74 E-value=0.011 Score=65.08 Aligned_cols=161 Identities=12% Similarity=0.158 Sum_probs=87.2
Q ss_pred ccCHHHHHHHcCCCCcc-----ceecccCceEEEEEEeCCCcEEEEEEccccCccchHHHHHHHHHHhCCCC-CCCCCce
Q 001384 794 AFTYSDILKATGKFSED-----RIIGKGGFGTVYRGVLPDGREVAVKKLQREGLEGEREFRAEMEVLSGNGF-GWPHPNL 867 (1088)
Q Consensus 794 ~~~~~~~~~~~~~~~~~-----~~LG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~-~l~h~ni 867 (1088)
.++.+++...-.+|.+. +.|+.|....||+....+| .+++|+..... ....+..|.+++..+.. .+..|.+
T Consensus 6 ~~~~~~l~~~l~~~~~~~~~~~~~i~~G~~n~~~~v~~~~g-~~vlk~~~~~~--~~~~l~~e~~~l~~L~~~g~~vP~~ 82 (322)
T 2ppq_A 6 DITEDELRNFLTQYDVGSLTSYKGIAEGVENSNFLLHTTKD-PLILTLYEKRV--EKNDLPFFLGLMQHLAAKGLSCPLP 82 (322)
T ss_dssp CCCHHHHHHHHTTBCCCCEEEEEEECC---EEEEEEEESSC-CEEEEEECC-----CCHHHHHHHHHHHHHHTTCCCCCB
T ss_pred cCCHHHHHHHHHhCCCCcceEeeccCCCcccceEEEEeCCc-cEEEEEeCCCC--CHHHHHHHHHHHHHHHHCCCCCCcc
Confidence 34555666555666552 3466788899999987655 68899887531 12234445554433211 1334544
Q ss_pred eEEe-e--EEecCCeEEEEEEecCCCCHH-----H---------HHhhc----C-C----C---CHHHHHH---------
Q 001384 868 VTLY-G--WCLDGSEKILVYEYMEGGSLE-----D---------IISDR----T-R----L---TWRRRLD--------- 909 (1088)
Q Consensus 868 v~l~-~--~~~~~~~~~lv~e~~~~gsL~-----~---------~l~~~----~-~----l---~~~~~~~--------- 909 (1088)
+... | +....+..+++|+|++|..+. . .+|.. . + . .|.....
T Consensus 83 ~~~~~g~~~~~~~g~~~~l~~~l~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 162 (322)
T 2ppq_A 83 LPRKDGELLGELSGRPAALISFLEGMWLRKPEAKHCREVGKALAAMHLASEGFEIKRPNALSVDGWKVLWDKSEERADEV 162 (322)
T ss_dssp CCBTTCCSCEEETTEEEEEEECCCCBCCSSCCHHHHHHHHHHHHHHHHHTTTCCCCCBCTTSHHHHHHHHHHHGGGGGGT
T ss_pred cCCCCCCEEEEECCEEEEEEEeCCCcCCCCCCHHHHHHHHHHHHHHHHHhccCCCcccCccChHHHHHHHHHHHHHHHhh
Confidence 4321 1 112245678999999886431 0 11211 0 0 0 1222100
Q ss_pred ---HHHHHHHHHHHHHhcC----CCCeEecCCCCCCEEEcCCCCEEEeeccccee
Q 001384 910 ---IAIDVARALVFLHHEC----YPPIVHRDVKASNVLLDKEGKALVTDFGLARV 957 (1088)
Q Consensus 910 ---i~~qi~~~L~yLH~~~----~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~ 957 (1088)
+...+...++++++.. ..+++|+|+.+.||+++.++.+.++||+.+..
T Consensus 163 ~~~l~~~l~~~~~~l~~~~~~~~~~~liHgDl~~~Nil~~~~~~~~lIDf~~a~~ 217 (322)
T 2ppq_A 163 EKGLREEIRPEIDYLAAHWPKDLPAGVIHADLFQDNVFFLGDELSGLIDFYFACN 217 (322)
T ss_dssp STTHHHHHHHHHHHHHHHCCCSSCEEEECSCCCGGGEEEETTEEEEECCCTTCEE
T ss_pred hhhhHHHHHHHHHHHHhhCcccCCcccCCCCCCccCEEEeCCceEEEecchhccC
Confidence 0112445556665321 23799999999999998776568999997754
No 436
>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6
Probab=96.68 E-value=0.0051 Score=68.01 Aligned_cols=143 Identities=15% Similarity=0.105 Sum_probs=78.7
Q ss_pred ceecccCceEEEEEEeCCCcEEEEEEccccCccchHHHHHHHHHHhCCCC-CCCCCceeEEee--EEecCCeEEEEEEec
Q 001384 811 RIIGKGGFGTVYRGVLPDGREVAVKKLQREGLEGEREFRAEMEVLSGNGF-GWPHPNLVTLYG--WCLDGSEKILVYEYM 887 (1088)
Q Consensus 811 ~~LG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~-~l~h~niv~l~~--~~~~~~~~~lv~e~~ 887 (1088)
..++ |....||++...+|+.+++|+..... .....+..|..++..+.. .+.-|.++..-+ +...++..++||||+
T Consensus 32 ~~l~-g~~n~~y~v~~~~g~~~vlK~~~~~~-~~~~~~~~E~~~~~~L~~~g~~vp~~~~~~g~~~~~~~g~~~~l~~~i 109 (328)
T 1zyl_A 32 TPLN-SYENRVYQFQDEDRRRFVVKFYRPER-WTADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQGFYFAVFPSV 109 (328)
T ss_dssp EEEC-CSSSEEEEECCTTCCCEEEEEECTTT-SCHHHHHHHHHHHHHHHHTTCSBCCCCCBTTBSCEEETTEEEEEEECC
T ss_pred Eeec-CcccceEEEEcCCCCEEEEEEcCCCC-CCHHHHHHHHHHHHHHHHcCCeecceeecCCcEEEEECCEEEEEEEec
Confidence 4566 88889999887778789999986431 133455666665544321 122333322201 112245668899999
Q ss_pred CCCCHH-----H------H---Hhh----c-----CCCCHHHH----HHH---------------HHHHHHHHHHHHhc-
Q 001384 888 EGGSLE-----D------I---ISD----R-----TRLTWRRR----LDI---------------AIDVARALVFLHHE- 924 (1088)
Q Consensus 888 ~~gsL~-----~------~---l~~----~-----~~l~~~~~----~~i---------------~~qi~~~L~yLH~~- 924 (1088)
+|.++. . . +|. . ...++... ..+ ...+...++.+.+.
T Consensus 110 ~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 189 (328)
T 1zyl_A 110 GGRQFEADNIDQMEAVGRYLGRMHQTGRKQLFIHRPTIGLNEYLIEPRKLFEDATLIPSGLKAAFLKATDELIAAVTAHW 189 (328)
T ss_dssp CCEECCSSCHHHHHHHHHHHHHHHHHHTSSCCSSSCBCSHHHHTHHHHHHHHTCSSSCTTTHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCccCCCCCHHHHHhhHHHHHhhcCcCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 875421 1 1 111 0 01222111 011 11111223333221
Q ss_pred ---CCCCeEecCCCCCCEEEcCCCCEEEeeccccee
Q 001384 925 ---CYPPIVHRDVKASNVLLDKEGKALVTDFGLARV 957 (1088)
Q Consensus 925 ---~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~ 957 (1088)
....++|+|+++.||+++ + .+.++||+.+..
T Consensus 190 ~~~~~~~l~HgD~~~~Nil~~-~-~~~lIDfe~a~~ 223 (328)
T 1zyl_A 190 REDFTVLRLHGDCHAGNILWR-D-GPMFVDLDDARN 223 (328)
T ss_dssp CSCSCCEECCSSCSGGGEEES-S-SEEECCCTTCCE
T ss_pred hhcCCeeeeeCCCCcccEeEc-C-CCEEEECCCCCc
Confidence 123689999999999998 4 899999988754
No 437
>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}
Probab=96.49 E-value=0.021 Score=62.21 Aligned_cols=30 Identities=20% Similarity=0.305 Sum_probs=25.8
Q ss_pred CeEecCCCCCCEEEcCCCCEEEeecccceee
Q 001384 928 PIVHRDVKASNVLLDKEGKALVTDFGLARVV 958 (1088)
Q Consensus 928 ~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~ 958 (1088)
.++|+|+.+.||+ ..++.+.++||..+..-
T Consensus 174 ~l~HgDl~~~Nil-~~~~~~~lID~e~a~~g 203 (301)
T 3dxq_A 174 AACHCDPLCENFL-DTGERMWIVDWEYSGMN 203 (301)
T ss_dssp EEECSCCCGGGEE-ECSSCEEECCCTTCEEE
T ss_pred eeeccCCCcCCEE-ECCCCEEEEecccccCC
Confidence 5899999999999 56778999999988653
No 438
>2yle_A Protein spire homolog 1; actin-binding protein, actin polymerization; 1.80A {Homo sapiens} PDB: 2ylf_A 3r7g_A 3rbw_A
Probab=96.40 E-value=0.016 Score=58.22 Aligned_cols=101 Identities=17% Similarity=0.140 Sum_probs=67.0
Q ss_pred CHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccceeecCCCCcccccc
Q 001384 891 SLEDIISDR-TRLTWRRRLDIAIDVARALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLARVVSAGDSHVSTTI 969 (1088)
Q Consensus 891 sL~~~l~~~-~~l~~~~~~~i~~qi~~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~ 969 (1088)
+|.++++.. .+++++++|.++.|.+.+|.-.-.+. .-..+=+.|..|++..+|.|.+.+ ..+.
T Consensus 34 SL~eIL~~~~~PlsEEqaWALc~Qc~~~L~~~~~~~--~~~~~i~~~~~i~l~~dG~V~f~~-~~s~------------- 97 (229)
T 2yle_A 34 SLEEILRLYNQPINEEQAWAVCYQCCGSLRAAARRR--QPRHRVRSAAQIRVWRDGAVTLAP-AADD------------- 97 (229)
T ss_dssp EHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCCSGGGEEEETTSCEEECC-C----------------
T ss_pred cHHHHHHHcCCCcCHHHHHHHHHHHHHHHHhhhhcc--cCCceecCCcceEEecCCceeccc-cccc-------------
Confidence 799999764 57999999999999999987763211 111233457899999999998764 1110
Q ss_pred cccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcC
Q 001384 970 AGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRA 1008 (1088)
Q Consensus 970 ~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p 1008 (1088)
.....+.|||... ...+.+.=|||+|+++|.-+--..|
T Consensus 98 ~~~~~~~~pe~~~-~~~te~~~IysLG~tLY~ALDygL~ 135 (229)
T 2yle_A 98 AGEPPPVAGKLGY-SQCMETEVIESLGIIIYKALDYGLK 135 (229)
T ss_dssp ---------CCSS-SSSCHHHHHHHHHHHHHHHHTTTCC
T ss_pred ccccCCCChhhcc-ccchHHHHHHHHHHHHHHHhhcCCC
Confidence 1223567888764 3667889999999999998854433
No 439
>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*
Probab=96.39 E-value=0.0048 Score=69.28 Aligned_cols=139 Identities=17% Similarity=0.198 Sum_probs=80.3
Q ss_pred ceecccCceEEEEEEeC--------CCcEEEEEEccccCccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeEEE
Q 001384 811 RIIGKGGFGTVYRGVLP--------DGREVAVKKLQREGLEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEKIL 882 (1088)
Q Consensus 811 ~~LG~G~~g~Vy~~~~~--------~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~~l 882 (1088)
+.+..|-...+|++... +++.+++|+.... ........+|.++++.+. .+.-..++++++.+ .+
T Consensus 56 ~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlR~~g~~-~~~~~~~~rE~~vl~~L~---~~gv~P~ll~~~~~----g~ 127 (379)
T 3feg_A 56 YPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAI-LQGVDSLVLESVMFAILA---ERSLGPQLYGVFPE----GR 127 (379)
T ss_dssp EEC-----CCEEEEECCTTSCCCSSCCSEEEEEECC----CCHHHHHHHHHHHHHHH---HTTSSCCEEEEETT----EE
T ss_pred EEcCCcccccEEEEEeCCCccccCCCCCeEEEEECCCc-cchHHHHHHHHHHHHHHH---hcCCCCeEEEEcCC----cc
Confidence 56777888899999864 2478999987432 223445667877775433 12222455665543 28
Q ss_pred EEEecCCCCHH--------------HH---HhhcC-----CCC--HHHHHHHHHHHHH-------------------HHH
Q 001384 883 VYEYMEGGSLE--------------DI---ISDRT-----RLT--WRRRLDIAIDVAR-------------------ALV 919 (1088)
Q Consensus 883 v~e~~~~gsL~--------------~~---l~~~~-----~l~--~~~~~~i~~qi~~-------------------~L~ 919 (1088)
||||++|.++. +. +|... ... +.++.++..++.. .++
T Consensus 128 v~e~i~G~~l~~~~l~~p~~~~~ia~~La~LH~~~~~~~~~~~~l~~~i~~w~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 207 (379)
T 3feg_A 128 LEQYIPSRPLKTQELREPVLSAAIATKMAQFHGMEMPFTKEPHWLFGTMERYLKQIQDLPPTGLPEMNLLEMYSLKDEMG 207 (379)
T ss_dssp EEECCSEEECCGGGGGCHHHHHHHHHHHHHHHTCCCSSCCSCCHHHHHHHHHHHHHHHCCCCSCCSCCHHHHTTHHHHHH
T ss_pred EEEEecCccCChhHhCCHHHHHHHHHHHHHHhCCCCCCCCCcccHHHHHHHHHHHHHhccCcccchhhhhhhHHHHHHHH
Confidence 99999876542 11 12211 122 4555555544422 233
Q ss_pred HHHh----c-CCCCeEecCCCCCCEEEcCC----CCEEEeeccccee
Q 001384 920 FLHH----E-CYPPIVHRDVKASNVLLDKE----GKALVTDFGLARV 957 (1088)
Q Consensus 920 yLH~----~-~~~~ivH~DLkp~NIll~~~----~~~kl~Dfg~a~~ 957 (1088)
+|.+ . ....++|+|+.+.||+++.+ +.+.++||..+..
T Consensus 208 ~L~~~L~~~~~~~~~~H~D~~~~Nil~~~~~~~~~~~~~IDwE~a~~ 254 (379)
T 3feg_A 208 NLRKLLESTPSPVVFCHNDIQEGNILLLSEPENADSLMLVDFEYSSY 254 (379)
T ss_dssp HHHHHHHTSCCCEEEECSCCCGGGEEEESCC---CCEEECCCTTCEE
T ss_pred HHHHHHhhcCCCcEEEcCCCCCCeEEEcCCCCccCcEEEEecccCCc
Confidence 3322 1 12368999999999999876 7899999998864
No 440
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.35 E-value=0.0053 Score=57.45 Aligned_cols=58 Identities=22% Similarity=0.259 Sum_probs=43.7
Q ss_pred cEEEccCCcCC-CCCCccccCCCCCcEEEccccccccCCCccccCCCCCCeEEccCCcCcc
Q 001384 416 QTLDLSFNELT-GPIPPSIGNLTSLLWLMLANNSLSGEIPGEIGNCTSLLWLNLSNNKLSG 475 (1088)
Q Consensus 416 ~~L~L~~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g 475 (1088)
..++.+++.|+ ..+|..+. .+|++|+|++|+|+...+..|..+++|+.|+|++|++..
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 36778888876 34665443 468888999999885555667888999999999999864
No 441
>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*
Probab=96.25 E-value=0.025 Score=62.73 Aligned_cols=32 Identities=25% Similarity=0.413 Sum_probs=28.3
Q ss_pred CCeEecCCCCCCEEEcCCCCEEEeecccceee
Q 001384 927 PPIVHRDVKASNVLLDKEGKALVTDFGLARVV 958 (1088)
Q Consensus 927 ~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~~ 958 (1088)
..++|+|+.+.||+++.++.+.++||+.+..-
T Consensus 206 ~~~~HgD~~~~N~l~~~~~~~~~iD~e~~~~~ 237 (339)
T 3i1a_A 206 YVLCHSDIHAGNVLVGNEESIYIIDWDEPMLA 237 (339)
T ss_dssp CEEECSCCCGGGEEECGGGCEEECCCSSCEEE
T ss_pred ceeEeCCCCcCCEEEeCCCeEEEEECCCCeeC
Confidence 47999999999999998889999999887653
No 442
>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8
Probab=96.16 E-value=0.0082 Score=68.98 Aligned_cols=72 Identities=18% Similarity=0.128 Sum_probs=45.3
Q ss_pred ceecccCceEEEEEEeCC--------CcEEEEEEccccCccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeEEE
Q 001384 811 RIIGKGGFGTVYRGVLPD--------GREVAVKKLQREGLEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEKIL 882 (1088)
Q Consensus 811 ~~LG~G~~g~Vy~~~~~~--------~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~~l 882 (1088)
+.|+.|....||++...+ ++.+++|+.... .....+..|..++..+. .+.-..++++.+.+ .+
T Consensus 79 ~~l~gG~tN~~y~v~~~~~~~~~~~~~~~~vlRi~~~~--~~~~~li~E~~~l~~L~---~~g~~P~l~~~~~~----g~ 149 (429)
T 1nw1_A 79 SRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNP--ETESHLVAESVIFTLLS---ERHLGPKLYGIFSG----GR 149 (429)
T ss_dssp EEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSC--CCHHHHHHHHHHHHHHH---HTTSSSCEEEEETT----EE
T ss_pred EEeCCCcccceEEEEeCCCccccCCCCceEEEEEeCCC--CcHHHHHHHHHHHHHHH---hCCCCCcEEEEeCC----CE
Confidence 568888889999998653 578999988542 11134556777666432 12222455665432 38
Q ss_pred EEEecCCCC
Q 001384 883 VYEYMEGGS 891 (1088)
Q Consensus 883 v~e~~~~gs 891 (1088)
|+||++|.+
T Consensus 150 v~e~l~G~~ 158 (429)
T 1nw1_A 150 LEEYIPSRP 158 (429)
T ss_dssp EECCCCEEE
T ss_pred EEEEeCCcc
Confidence 999998643
No 443
>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}
Probab=95.85 E-value=0.026 Score=65.15 Aligned_cols=74 Identities=12% Similarity=0.038 Sum_probs=43.3
Q ss_pred ceecccCceEEEEEEeCC-CcEEEEEEccccCccchHHHHHHHHHHhCCCCCCCCCceeEEeeEEecCCeEEEEEEecCC
Q 001384 811 RIIGKGGFGTVYRGVLPD-GREVAVKKLQREGLEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLDGSEKILVYEYMEG 889 (1088)
Q Consensus 811 ~~LG~G~~g~Vy~~~~~~-~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~~lv~e~~~~ 889 (1088)
+.|+.|-...+|++...+ ++.+++|+..... ....+...|..++..+. .+.-..++++++. + .+||||++|
T Consensus 114 ~~lsgG~tN~~y~v~~~~~~~~~vLRi~g~~~-~~~idR~~E~~vl~~L~---~~gl~P~ll~~~~--~--G~v~e~I~G 185 (458)
T 2qg7_A 114 QIINGGITNILIKVKDMSKQAKYLIRLYGPKT-DEIINREREKKISCILY---NKNIAKKIYVFFT--N--GRIEEFMDG 185 (458)
T ss_dssp EEECC--CEEEEEEEETTTTEEEEEEEECC-C-CSCSCHHHHHHHHHHHT---TSSSBCCEEEEET--T--EEEEECCCS
T ss_pred EEcCCCeEeEEEEEEECCCCceEEEEECCCCh-hhhcCHHHHHHHHHHHH---hcCCCCCEEEEeC--C--eEEEEeeCC
Confidence 568888889999999764 4788899875432 11111245666665533 1222346666653 2 359999987
Q ss_pred CCH
Q 001384 890 GSL 892 (1088)
Q Consensus 890 gsL 892 (1088)
.++
T Consensus 186 ~~l 188 (458)
T 2qg7_A 186 YAL 188 (458)
T ss_dssp EEC
T ss_pred ccC
Confidence 543
No 444
>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*
Probab=95.34 E-value=0.019 Score=64.65 Aligned_cols=30 Identities=17% Similarity=0.306 Sum_probs=25.0
Q ss_pred CCeEecCCCCCCEEEcCCCCEEEeeccccee
Q 001384 927 PPIVHRDVKASNVLLDKEGKALVTDFGLARV 957 (1088)
Q Consensus 927 ~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~ 957 (1088)
..++|+|+.+.||+++.++ +.++||+.+..
T Consensus 212 ~~l~HgDl~~~Nil~~~~~-~~lID~e~a~~ 241 (369)
T 3c5i_A 212 IVFCHNDLQENNIINTNKC-LRLIDFEYSGF 241 (369)
T ss_dssp EEEECSCCCGGGEEECC-C-EEECCCTTCEE
T ss_pred eEEEeCCCCcccEEecCCc-EEEEEecCCCC
Confidence 3689999999999997654 89999998764
No 445
>3f2s_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics consortium, SGC, hemicholinium-3, alternative splicing, cytoplasm; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 3g15_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*
Probab=94.92 E-value=0.05 Score=61.27 Aligned_cols=30 Identities=27% Similarity=0.435 Sum_probs=26.9
Q ss_pred CeEecCCCCCCEEEcCC------CCEEEeeccccee
Q 001384 928 PIVHRDVKASNVLLDKE------GKALVTDFGLARV 957 (1088)
Q Consensus 928 ~ivH~DLkp~NIll~~~------~~~kl~Dfg~a~~ 957 (1088)
.++|+|+.+.||+++.+ +.+.++||..|..
T Consensus 245 v~~H~Dl~~~Nil~~~~~~~~~~~~~~lID~E~a~~ 280 (401)
T 3f2s_A 245 VFCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSSY 280 (401)
T ss_dssp EEECSCCCGGGEEEETTGGGCSSSCEEECCCTTCEE
T ss_pred eEEeccCCcccEEEcCCcccCcccceEEEeeccCCc
Confidence 68999999999999877 7899999998754
No 446
>3mes_A Choline kinase; malaria, structural genomics, structural genomics consortium, SGC, transferase; HET: ADP DME PT3; 2.35A {Cryptosporidium parvum}
Probab=93.23 E-value=0.15 Score=57.89 Aligned_cols=29 Identities=17% Similarity=0.445 Sum_probs=26.4
Q ss_pred CeEecCCCCCCEEEcCCCCEEEeeccccee
Q 001384 928 PIVHRDVKASNVLLDKEGKALVTDFGLARV 957 (1088)
Q Consensus 928 ~ivH~DLkp~NIll~~~~~~kl~Dfg~a~~ 957 (1088)
.++|+|+.+.||+ +.++.+.++||..+..
T Consensus 263 ~~~H~D~~~~N~l-~~~~~~~~IDwe~a~~ 291 (424)
T 3mes_A 263 VFAHNDLQENNLL-QTQNNIRMIDYEYSAI 291 (424)
T ss_dssp EEECSCCCGGGEE-ECSSCEEECCCTTCEE
T ss_pred eEECCCCCcccee-cCCCcEEEEecccCCc
Confidence 6899999999999 8888999999998865
No 447
>4ann_A ESSB; membrane protein, membrane secretion, ESS type VII secretion virulence; 1.05A {Staphylococcus aureus subsp}
Probab=88.63 E-value=0.55 Score=47.23 Aligned_cols=124 Identities=10% Similarity=0.139 Sum_probs=85.8
Q ss_pred HHHHHHhCCCCCCCCCceeEEeeEEecCCeEEEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCe
Q 001384 850 AEMEVLSGNGFGWPHPNLVTLYGWCLDGSEKILVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALVFLHHECYPPI 929 (1088)
Q Consensus 850 ~E~~~l~~~~~~l~h~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~~~~i 929 (1088)
.|+..+.. .||++++. .+-.+++.+.+.++.-+ ...+|-. -...+..++++++.+|+....+++..
T Consensus 35 ~el~LL~~-----~~~~Fl~~-~I~e~eD~v~~~y~~~~--~~~~f~~-ik~~~~~eKlr~l~ni~~l~~~~~~r----- 100 (215)
T 4ann_A 35 HLMYLLEQ-----HSPYFIDA-ELTELRDSFQIHYDIND--NHTPFDN-IKSFTKNEKLRYLLNIKNLEEVNRTR----- 100 (215)
T ss_dssp GGGGGGGS-----CCTTBCCE-EEEECSSEEEEEECCCT--TSEEGGG-GGGSCHHHHHHHHHHGGGGGGGGGSS-----
T ss_pred HHHHHHhc-----cCCcccce-EEEEcccEEEEEEEcCc--ccCCHHH-HHhcCHHHHHHHHHHHHHHHHHhcCc-----
Confidence 45666653 79999866 45566666655555543 2222211 23478999999999999999877766
Q ss_pred EecCCCCCCEEEcCCCCEEEeecccceeecCCCCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCC
Q 001384 930 VHRDVKASNVLLDKEGKALVTDFGLARVVSAGDSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRAL 1009 (1088)
Q Consensus 930 vH~DLkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~ 1009 (1088)
+|--+.|+|++++.++.+++.-.|+...+ +|. ..+...=.-.+=+++..+++++..|
T Consensus 101 ~tf~L~P~NL~f~~~~~p~i~~RGik~~l------------------~P~-----~~~ee~fL~qyKAliiall~~K~~F 157 (215)
T 4ann_A 101 YTFVLAPDELFFTRDGLPIAKTRGLQNVV------------------DPL-----PVSEAEFLTRYKALVICAFNEKQSF 157 (215)
T ss_dssp EECCCSGGGEEECTTSCEEESCCEETTTB------------------SCC-----CCCHHHHHHHHHHHHHHHHCTTCCH
T ss_pred eEEEEecceEEEcCCCCEEEEEccCccCC------------------CCC-----CCCHHHHHHHHHHHHHHHHcCCCCH
Confidence 89999999999999999999877653222 221 2233333445678888899998888
Q ss_pred C
Q 001384 1010 E 1010 (1088)
Q Consensus 1010 ~ 1010 (1088)
+
T Consensus 158 e 158 (215)
T 4ann_A 158 D 158 (215)
T ss_dssp H
T ss_pred H
Confidence 5
No 448
>4ano_A ESSB; membrane protein, membrane secretion, ESS type V secretion S; HET: MSE; 1.70A {Geobacillus thermodenitrificans ng80-2organism_taxid}
Probab=86.58 E-value=2.8 Score=42.26 Aligned_cols=115 Identities=12% Similarity=0.132 Sum_probs=80.2
Q ss_pred CCCceeEEeeEEecCCeEEEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHH-HHHhcCCCCeEecCCCCCCEEE
Q 001384 863 PHPNLVTLYGWCLDGSEKILVYEYMEGGSLEDIISDRTRLTWRRRLDIAIDVARALV-FLHHECYPPIVHRDVKASNVLL 941 (1088)
Q Consensus 863 ~h~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~l~~~~~~~i~~qi~~~L~-yLH~~~~~~ivH~DLkp~NIll 941 (1088)
.||++ -...-.+++.+.+.++.-+++.=..-+ ..++..++++++.+|+.... +++.. +|--+.|+|+++
T Consensus 48 ~~~~f--~~~I~~~eD~~~i~y~~~~~~~~f~~i---~~~~~~eKlrll~nl~~L~~~~~~~r-----~tf~l~P~NL~f 117 (219)
T 4ano_A 48 VDPCI--VRDIDVSEDEVKVVIKPPSSFLTFAAI---RKTTLLSRIRAAIHLVSKVKHHSARR-----LIFIVCPENLMF 117 (219)
T ss_dssp SCSSS--EEEEEECSSEEEEEEECCTTCEEHHHH---HTSCHHHHHHHHHHHHHHHSSCCSSS-----EECCCCGGGEEE
T ss_pred cCCCC--CeEEEEeCCEEEEEEEcCcccCcHHHH---HhcCHHHHHHHHHHHHHHHHHhhhCc-----eeEEEeCceEEE
Confidence 68888 444456777777777766443222333 34789999999999998888 77766 888999999999
Q ss_pred cCCCCEEEeecccceeecCCCCcccccccccccccCccccCCCCCCcchhHHHHHHHHHHHHhCCcCCC
Q 001384 942 DKEGKALVTDFGLARVVSAGDSHVSTTIAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALE 1010 (1088)
Q Consensus 942 ~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~~l~elltg~~p~~ 1010 (1088)
|.++.+++.-.|+-.. ++|. ..+...=.-.+=+++..++.++..|+
T Consensus 118 ~~~~~p~i~hRGi~~~------------------lpP~-----e~~ee~fl~qyKali~all~~K~~Fe 163 (219)
T 4ano_A 118 NRALEPFFLHVGVKES------------------LPPD-----EWDDERLLREVKATVLALTEGEYRFD 163 (219)
T ss_dssp CTTCCEEESCCEETTT------------------BSSC-----SCCHHHHHHHHHHHHHHHTTCSSCHH
T ss_pred eCCCcEEEEEcCCccc------------------CCCC-----CCCHHHHHHHHHHHHHHHHcCCCCHH
Confidence 9999999987775432 2222 22222233456678888888887775
No 449
>3g15_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics CONS SGC, hemicholinium-3, transferase; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*
Probab=86.04 E-value=1.8 Score=48.74 Aligned_cols=30 Identities=27% Similarity=0.507 Sum_probs=25.5
Q ss_pred CeEecCCCCCCEEE------cCCCCEEEeeccccee
Q 001384 928 PIVHRDVKASNVLL------DKEGKALVTDFGLARV 957 (1088)
Q Consensus 928 ~ivH~DLkp~NIll------~~~~~~kl~Dfg~a~~ 957 (1088)
.++|+|+.+.||++ +++..++++||.+|..
T Consensus 245 vfcHnDl~~gNil~~~~~~~~~~~~l~vIDwEya~~ 280 (401)
T 3g15_A 245 VFCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSSY 280 (401)
T ss_dssp EEECSCCCGGGEEEETTGGGCSSCCEEECCCTTCEE
T ss_pred eeEEecCCCCeEEEecCcccCcCCeEEEechHhccC
Confidence 35799999999999 4567899999998865
No 450
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=77.79 E-value=4 Score=29.19 Aligned_cols=16 Identities=6% Similarity=-0.016 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHhcCc
Q 001384 738 ICGVLSIIIYMLVKRP 753 (1088)
Q Consensus 738 ~~~~~~~~~~~~~kr~ 753 (1088)
+++++.+++|.++||.
T Consensus 25 vi~~l~~~~~~RRR~~ 40 (44)
T 2jwa_A 25 VVLGVVFGILIKRRQQ 40 (44)
T ss_dssp HHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHhheehhhh
Confidence 3333444455554443
No 451
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=60.50 E-value=15 Score=27.54 Aligned_cols=24 Identities=13% Similarity=0.300 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001384 725 IILAFLALLMACLICGVLSIIIYM 748 (1088)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~~~ 748 (1088)
+++++++++.+.++++++++++|.
T Consensus 9 ~WiIi~svl~GLLLL~Lii~~LwK 32 (54)
T 2l8s_A 9 LWVILLSAFAGLLLLMLLILALWK 32 (54)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555666663
No 452
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=50.62 E-value=27 Score=24.21 Aligned_cols=21 Identities=10% Similarity=0.107 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001384 728 AFLALLMACLICGVLSIIIYM 748 (1088)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~~~ 748 (1088)
++++.++++.++.++.+++|.
T Consensus 16 iVvG~v~gv~li~~l~~~~~r 36 (38)
T 2k1k_A 16 VIFGLLLGAALLLGILVFRSR 36 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred eehHHHHHHHHHHHHHHHHee
Confidence 333344444444444444443
No 453
>3ls8_A Phosphatidylinositol 3-kinase catalytic subunit type 3; alpha/beta protein, PIK3C3, compound 15E, structural genomics, SGC stockholm; HET: AJZ; 2.25A {Homo sapiens} PDB: 3ihy_A
Probab=45.36 E-value=1.6e+02 Score=34.42 Aligned_cols=46 Identities=24% Similarity=0.250 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHH--HHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccce
Q 001384 904 WRRRLDIAIDVA--RALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLAR 956 (1088)
Q Consensus 904 ~~~~~~i~~qi~--~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~ 956 (1088)
+..+..++..+| .-+.|+=.- +|=.++||||+.+|++.=+|||.+-
T Consensus 454 ~~a~~nF~~S~A~ySvv~YILGi-------gDRH~~NILld~tG~v~HIDFG~~f 501 (614)
T 3ls8_A 454 AEVMDTYVKSCAGYCVITYILGV-------GDRHLDNLLLTKTGKLFHIDFGYIL 501 (614)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTC-------CCCCTTSEEECTTSCEEECCCSSCT
T ss_pred HHHHHHHHHHHHHHhHhheeeec-------cCCCCcceeEcCCCCEeeeehHHhh
Confidence 444555555543 345555443 5778999999999999999999873
No 454
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=44.46 E-value=2.9 Score=48.04 Aligned_cols=59 Identities=10% Similarity=0.101 Sum_probs=17.0
Q ss_pred cceecccCceEEEEEEeCC-CcEEEE------EEccccCccc--hHHHHHHHHHHhCCCCCCCCCceeEEeeEEe
Q 001384 810 DRIIGKGGFGTVYRGVLPD-GREVAV------KKLQREGLEG--EREFRAEMEVLSGNGFGWPHPNLVTLYGWCL 875 (1088)
Q Consensus 810 ~~~LG~G~~g~Vy~~~~~~-~~~vav------K~~~~~~~~~--~~~~~~E~~~l~~~~~~l~h~niv~l~~~~~ 875 (1088)
.+.+| ||.||+|.+.. ..+||| |..+...... ...+.+|..++.. ..|||+++.+++..
T Consensus 147 ~~~lG---fG~v~~g~~~~~~~~Vav~~~~~~K~~~~~~~~~e~~~~~~rea~l~~~----~~H~niv~~h~f~~ 214 (463)
T 3cxl_A 147 YEHVG---YTTLNREPAYKKHMPVLKETHDERDSTGQDGVSEKRLTSLVRRATLKEN----EQIPKYEKIHNFKV 214 (463)
T ss_dssp TTTSS---BCCC---------CCBGGGC---------------------------------------CBCCCEEE
T ss_pred cccCC---chhhhcccccccCCchhhhhccCcccccccccccccccccccccccccc----ccccccCCCcceEE
Confidence 45566 99999999863 367888 7665432222 2346666666554 57999999888754
No 455
>2x6h_A GH13170P, VPS34, phosphotidylinositol 3 kinase 59F; transferase; 2.90A {Drosophila melanogaster} PDB: 2x6f_A 2x6i_A* 2x6j_A* 2x6k_A*
Probab=42.92 E-value=1.6e+02 Score=35.09 Aligned_cols=44 Identities=25% Similarity=0.272 Sum_probs=31.1
Q ss_pred HHHHHHHHHH--HHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccce
Q 001384 906 RRLDIAIDVA--RALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLAR 956 (1088)
Q Consensus 906 ~~~~i~~qi~--~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~ 956 (1088)
.+..++..+| ..+.|+=.- +|=.++||||+.+|++.=+|||.+-
T Consensus 530 ar~nF~~SlA~~Svv~YILGl-------GDRH~~NILid~tG~v~HIDFG~~f 575 (696)
T 2x6h_A 530 VMDTYIKSCAGYCVITYLLGV-------GDRHLDNLLLTTNGKLFHIDFGYIL 575 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC-------CCCCTTTEEECTTSCEEECCCCSCT
T ss_pred HHHHHHHHHHHHHHHHHHccC-------CCCCCcceEEeCCCCEEEEeehhhh
Confidence 3445555443 334444433 6888999999999999999999873
No 456
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=39.95 E-value=56 Score=24.57 Aligned_cols=25 Identities=16% Similarity=0.332 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 001384 724 TIILAFLALLMACLICGVLSIIIYM 748 (1088)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~~~ 748 (1088)
.+++++++++.++++++++++++|.
T Consensus 11 p~wiIi~svl~GLllL~li~~~LwK 35 (54)
T 2knc_A 11 PIWWVLVGVLGGLLLLTILVLAMWK 35 (54)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555556666666666666666664
No 457
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=37.30 E-value=62 Score=22.95 Aligned_cols=26 Identities=15% Similarity=0.342 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001384 724 TIILAFLALLMACLICGVLSIIIYML 749 (1088)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 749 (1088)
.+++++++++.+.++++++.+++|.+
T Consensus 9 p~wiIi~s~l~GLllL~li~~~LwK~ 34 (42)
T 2k1a_A 9 PIWWVLVGVLGGLLLLTILVLAMWKV 34 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45555666666666666666666643
No 458
>1zza_A Stannin, AG8_1; helix, membrane protein; NMR {Homo sapiens}
Probab=36.60 E-value=48 Score=26.01 Aligned_cols=26 Identities=15% Similarity=0.310 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Q 001384 727 LAFLALLMACLICGVLSIIIYMLVKR 752 (1088)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~~~~~kr 752 (1088)
+.++.+++++..++++++.+|++.+-
T Consensus 15 vtv~viliavaalg~li~gcwcylrl 40 (90)
T 1zza_A 15 VTVIVILIAIAALGALILGCWCYLRL 40 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTSS
T ss_pred EEehhHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455556666677777776543
No 459
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=30.64 E-value=1.1e+02 Score=21.95 Aligned_cols=14 Identities=14% Similarity=-0.088 Sum_probs=8.9
Q ss_pred HHHHHHhcCccccc
Q 001384 744 IIIYMLVKRPAEQQ 757 (1088)
Q Consensus 744 ~~~~~~~kr~~~~~ 757 (1088)
...+++..|+++++
T Consensus 28 ~~~~~~~~RRr~~~ 41 (44)
T 2ks1_B 28 ALGIGLFMRRRHIV 41 (44)
T ss_dssp HHHHHHHHHTTTCC
T ss_pred HHHHHHHhhhhHhh
Confidence 35677777776543
No 460
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=30.61 E-value=81 Score=27.08 Aligned_cols=25 Identities=20% Similarity=0.337 Sum_probs=17.4
Q ss_pred ccCCCCCCccccCCCCCcEEEccCc
Q 001384 184 NNLTGRIDTCFDGCLNLRYLDLSSN 208 (1088)
Q Consensus 184 n~l~~~~~~~l~~l~~L~~L~Ls~N 208 (1088)
..++.+...+|.+|++|+.+.+-.+
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~ 30 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPN 30 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTT
T ss_pred CccCEecHHHhcCCCCCcEEEcCCc
Confidence 3556666777888888887777543
No 461
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=30.53 E-value=19 Score=24.34 Aligned_cols=6 Identities=17% Similarity=0.168 Sum_probs=2.4
Q ss_pred HHHHHH
Q 001384 744 IIIYML 749 (1088)
Q Consensus 744 ~~~~~~ 749 (1088)
+.+|.+
T Consensus 27 ~~~~iR 32 (35)
T 1iij_A 27 VGILIK 32 (35)
T ss_dssp TTHHHH
T ss_pred hheEEe
Confidence 334443
No 462
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=30.45 E-value=52 Score=28.34 Aligned_cols=44 Identities=23% Similarity=0.134 Sum_probs=21.3
Q ss_pred CCCCcCccCCCCCCCcEEECcccccc-CcccCCCCCCCceeeccc
Q 001384 115 FSGSIPDDLSSCRSLKYLNLSHNILS-GDLNLSGLRSLEILDLSV 158 (1088)
Q Consensus 115 l~~~~p~~l~~l~~L~~L~Ls~n~l~-~~~~l~~l~~L~~L~Ls~ 158 (1088)
++..-..+|.+|.+|+.+.|..+--+ +..+|.+|.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPNIGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTTSSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCchheEcHHHHhccCCccEEEEcC
Confidence 33333445555555555555543211 333455555555555543
No 463
>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A
Probab=29.30 E-value=1.3e+02 Score=37.83 Aligned_cols=59 Identities=19% Similarity=0.263 Sum_probs=38.4
Q ss_pred CHHHHHhhcC-CCCHHHH-HHHHHHHH--HHHHHHHhcCCCCeEecCCCCCCEEEcCCCCEEEeecccce
Q 001384 891 SLEDIISDRT-RLTWRRR-LDIAIDVA--RALVFLHHECYPPIVHRDVKASNVLLDKEGKALVTDFGLAR 956 (1088)
Q Consensus 891 sL~~~l~~~~-~l~~~~~-~~i~~qi~--~~L~yLH~~~~~~ivH~DLkp~NIll~~~~~~kl~Dfg~a~ 956 (1088)
.|.+|++... ...+.++ ..++...| ..+.|+=.- +|=.++||||+.+|++.=+|||.+-
T Consensus 899 ~L~~~f~~~~~~~~~~~ar~nF~~S~A~ysvv~YiLgi-------gDRH~~NILid~tG~v~HIDFG~~f 961 (1091)
T 3hhm_A 899 TLHQWLKDKNKGEIYDAAIDLFTRSCAGYCVATFILGI-------GDRHNSNIMVKDDGQLFHIDFGHFL 961 (1091)
T ss_dssp HHHHHHHTTSCTTSHHHHHHHHHHHHHHHHHHHHHHTC-------CCCCTTTEEEETTSCEEECCCCCCS
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHhhhhhheEEEEee-------cCCCCcceEEeCCCCEEEEeehhhh
Confidence 4666665543 2344443 34555443 334555443 6778999999999999999999874
No 464
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=25.06 E-value=69 Score=22.94 Aligned_cols=14 Identities=7% Similarity=0.105 Sum_probs=9.0
Q ss_pred HHHHHHhcCccccc
Q 001384 744 IIIYMLVKRPAEQQ 757 (1088)
Q Consensus 744 ~~~~~~~kr~~~~~ 757 (1088)
...+++..|+++++
T Consensus 27 ~~~~~~~~RRRr~~ 40 (44)
T 2l2t_A 27 GLTFAVYVRRKSIK 40 (44)
T ss_dssp HHHHHHHHHTTCSS
T ss_pred HHHHHHHhhhhhhh
Confidence 35667888776544
No 465
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=23.24 E-value=71 Score=21.80 Aligned_cols=21 Identities=33% Similarity=0.447 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001384 728 AFLALLMACLICGVLSIIIYM 748 (1088)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~~~ 748 (1088)
+++++++++++..++..+.|.
T Consensus 7 ~ivalivalIiaIVVWtiv~i 27 (36)
T 1pi7_A 7 AIVALVVAIIIAIVVWSIVII 27 (36)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444443
No 466
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=22.38 E-value=80 Score=25.87 Aligned_cols=19 Identities=26% Similarity=0.653 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001384 729 FLALLMACLICGVLSIIIY 747 (1088)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~~ 747 (1088)
+++++.++++++++++++|
T Consensus 14 v~gvi~gilliGllllliw 32 (79)
T 2knc_B 14 LLSVMGAILLIGLAALLIW 32 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444
No 467
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=20.77 E-value=85 Score=22.34 Aligned_cols=24 Identities=25% Similarity=0.618 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001384 726 ILAFLALLMACLICGVLSIIIYML 749 (1088)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~~~~~ 749 (1088)
..++++++.++++++++..++|..
T Consensus 10 ~~Iv~gvi~~ivliGl~lLliwk~ 33 (43)
T 2k9j_B 10 LVVLLSVMGAILLIGLAALLIWKL 33 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eehHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555543
No 468
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=20.18 E-value=1.5e+02 Score=22.32 Aligned_cols=29 Identities=7% Similarity=0.054 Sum_probs=14.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001384 722 KLTIILAFLALLMACLICGVLSIIIYMLV 750 (1088)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 750 (1088)
-++++.+++++++..+++.++.-+-++.+
T Consensus 13 wiIi~svl~GLllL~li~~~LwK~GFFkR 41 (54)
T 2knc_A 13 WWVLVGVLGGLLLLTILVLAMWKVGFFKR 41 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcccC
Confidence 34444455555555555555544444433
No 469
>1cja_A Protein (actin-fragmin kinase); transferase; HET: AMP; 2.90A {Physarum polycephalum} SCOP: d.144.1.3
Probab=20.05 E-value=1.3e+02 Score=32.20 Aligned_cols=135 Identities=17% Similarity=0.183 Sum_probs=69.6
Q ss_pred ceecccCceEEEEEEeCCCcEEEEEEccccCccchHHHHHHHHHHhCCCCCCCCCceeEEeeEE----------------
Q 001384 811 RIIGKGGFGTVYRGVLPDGREVAVKKLQREGLEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWC---------------- 874 (1088)
Q Consensus 811 ~~LG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~~l~h~niv~l~~~~---------------- 874 (1088)
+..-.|.. .||.+.. ++..++||-.. ....+-+..++...-. +.-|+.- ++.+.
T Consensus 75 ~~s~~Gst-gvff~~t-d~~~~VVK~s~---~l~~E~l~s~LA~~LG----lpiP~~R-iv~~~~~E~~e~~~~L~~~~~ 144 (342)
T 1cja_A 75 ERSEKGTE-GLFFVET-ESGVFIVKRST---NIESETFCSLLCMRLG----LHAPKVR-VVSSNSEEGTNMLECLAAIDK 144 (342)
T ss_dssp EECCSTTS-CEEEEEE-SSCEEEEECCT---THHHHHHHHHHHHHHT----CCCCCEE-EEESSSHHHHHHHHHHHHHCS
T ss_pred EeccCCCC-CeEEEEe-CCCEEEEeCcH---HHHHHHHHHHHHHHhC----CCCCCee-EEeeCcHHHHHHHHHHHHhhh
Confidence 44445554 4555544 47789999442 1233344445444333 4566532 22211
Q ss_pred -------ecCCeEEEEEEecCCCCHHHHHhh--cCCCCHHHHHHHHHHHHHHHHHHHhcCCC-CeEe-cCCCCCCEEEcC
Q 001384 875 -------LDGSEKILVYEYMEGGSLEDIISD--RTRLTWRRRLDIAIDVARALVFLHHECYP-PIVH-RDVKASNVLLDK 943 (1088)
Q Consensus 875 -------~~~~~~~lv~e~~~~gsL~~~l~~--~~~l~~~~~~~i~~qi~~~L~yLH~~~~~-~ivH-~DLkp~NIll~~ 943 (1088)
......+++|||.+|..|...-.. ...+..+....+ +-+-+++++...... +.+. .-=.++|||++.
T Consensus 145 ~~~~l~~l~~~~~~l~meyv~G~~L~e~~~~~~~~~f~~~~~k~L--G~Ii~FDi~InN~DR~Pl~W~n~GN~~NIL~~~ 222 (342)
T 1cja_A 145 SFRVITTLANQANILLMELVRGITLNKLTTTSAPEVLTKSTMQQL--GSLMALDVIVNNSDRLPIAWTNEGNLDNIMLSE 222 (342)
T ss_dssp SSCHHHHHTTCSEEEEEECCCEEESTTCCSSSHHHHSCHHHHHHH--HHHHHHHHHHTCCSSSCSSSCSCCCGGGEEEES
T ss_pred hhHHHHHhhcccceehhhhcCCCccccchhhhhhhhcCHHHHHhh--chhheehhhhcCCccCcccccCCCChhheEEeC
Confidence 012246699999987665532111 011232222221 123456666665321 2221 225789999987
Q ss_pred CCC-EEEeeccccee
Q 001384 944 EGK-ALVTDFGLARV 957 (1088)
Q Consensus 944 ~~~-~kl~Dfg~a~~ 957 (1088)
++. +.++|-+.+..
T Consensus 223 ~n~~~~~IDhn~af~ 237 (342)
T 1cja_A 223 RGATVVPIDSKIIPL 237 (342)
T ss_dssp BTTCEEECSCCCCCC
T ss_pred CCCeEEEEcCCcccc
Confidence 554 88999998854
Done!