Query 001385
Match_columns 1088
No_of_seqs 1116 out of 6189
Neff 8.4
Searched_HMMs 46136
Date Thu Mar 28 23:27:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001385.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001385hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4231 Intracellular membrane 100.0 1.5E-93 3.3E-98 770.9 33.5 762 67-937 1-763 (763)
2 cd07211 Pat_PNPLA8 Patatin-lik 100.0 7E-53 1.5E-57 473.9 30.8 302 534-889 2-308 (308)
3 cd07215 Pat17_PNPLA8_PNPLA9_li 100.0 1.8E-50 4E-55 456.9 27.5 299 541-900 1-329 (329)
4 cd07216 Pat17_PNPLA8_PNPLA9_li 100.0 1.7E-49 3.7E-54 445.9 25.3 292 540-886 1-308 (309)
5 cd07214 Pat17_isozyme_like Pat 100.0 1.1E-48 2.3E-53 442.9 27.7 298 537-892 1-343 (349)
6 cd07212 Pat_PNPLA9 Patatin-lik 100.0 1.8E-48 3.9E-53 433.8 25.4 285 542-889 1-311 (312)
7 cd07213 Pat17_PNPLA8_PNPLA9_li 100.0 1.9E-41 4E-46 376.6 26.7 265 539-884 1-283 (288)
8 cd07199 Pat17_PNPLA8_PNPLA9_li 100.0 4.6E-41 1E-45 368.9 23.7 244 542-886 1-257 (258)
9 cd07217 Pat17_PNPLA8_PNPLA9_li 100.0 1.3E-39 2.8E-44 365.6 24.7 236 540-829 1-258 (344)
10 COG3621 Patatin [General funct 100.0 1.7E-32 3.7E-37 285.8 15.0 196 539-789 8-215 (394)
11 cd07225 Pat_PNPLA6_PNPLA7 Pata 99.9 2.6E-26 5.7E-31 254.7 26.4 186 540-810 15-202 (306)
12 cd07207 Pat_ExoU_VipD_like Exo 99.9 7.7E-27 1.7E-31 245.6 16.8 179 543-784 2-186 (194)
13 cd07205 Pat_PNPLA6_PNPLA7_NTE1 99.9 9.5E-27 2E-31 240.3 16.6 163 542-787 2-164 (175)
14 cd07210 Pat_hypo_W_succinogene 99.9 1.1E-25 2.4E-30 239.2 17.9 178 542-809 2-179 (221)
15 cd07228 Pat_NTE_like_bacteria 99.9 4.5E-25 9.7E-30 227.4 16.4 163 542-787 2-164 (175)
16 cd07209 Pat_hypo_Ecoli_Z1214_l 99.9 3.7E-24 8E-29 227.6 16.2 168 543-810 1-171 (215)
17 cd07230 Pat_TGL4-5_like Triacy 99.9 9.4E-24 2E-28 243.2 20.1 214 508-785 35-272 (421)
18 cd07227 Pat_Fungal_NTE1 Fungal 99.9 4.7E-23 1E-27 223.3 18.1 185 540-809 10-194 (269)
19 PRK10279 hypothetical protein; 99.9 2.5E-22 5.4E-27 221.5 23.4 178 540-806 5-182 (300)
20 cd07232 Pat_PLPL Patain-like p 99.9 1.5E-22 3.3E-27 232.3 20.1 212 508-785 31-261 (407)
21 cd07208 Pat_hypo_Ecoli_yjju_li 99.9 5.2E-22 1.1E-26 219.2 19.8 169 543-787 1-170 (266)
22 KOG0444 Cytoskeletal regulator 99.9 1E-23 2.2E-28 235.7 -2.2 249 119-385 97-376 (1255)
23 cd07198 Patatin Patatin-like p 99.9 1.8E-21 3.8E-26 200.2 13.6 158 543-784 1-163 (172)
24 KOG0444 Cytoskeletal regulator 99.8 5.4E-23 1.2E-27 229.9 -4.0 257 121-384 74-352 (1255)
25 COG1752 RssA Predicted esteras 99.8 2.8E-20 6.1E-25 209.0 17.8 188 539-805 10-199 (306)
26 cd07222 Pat_PNPLA4 Patatin-lik 99.8 1.8E-20 3.9E-25 202.7 14.5 167 543-784 2-170 (246)
27 cd07221 Pat_PNPLA3 Patatin-lik 99.8 4E-20 8.6E-25 199.4 14.9 166 543-784 3-170 (252)
28 KOG4194 Membrane glycoprotein 99.8 1.9E-21 4.1E-26 217.2 4.4 243 125-382 125-403 (873)
29 cd07229 Pat_TGL3_like Triacylg 99.8 1.6E-19 3.4E-24 202.8 19.6 203 536-804 79-310 (391)
30 PF01734 Patatin: Patatin-like 99.8 2.6E-21 5.6E-26 203.7 4.8 200 543-786 1-204 (204)
31 PLN00113 leucine-rich repeat r 99.8 3.2E-20 6.9E-25 242.9 15.4 178 123-301 138-321 (968)
32 PLN00113 leucine-rich repeat r 99.8 3.6E-20 7.8E-25 242.3 15.7 245 119-382 112-367 (968)
33 cd07218 Pat_iPLA2 Calcium-inde 99.8 7.3E-20 1.6E-24 196.8 15.2 161 543-782 3-166 (245)
34 KOG4194 Membrane glycoprotein 99.8 1.5E-21 3.4E-26 217.9 1.5 271 85-382 145-427 (873)
35 cd07206 Pat_TGL3-4-5_SDP1 Tria 99.8 9.7E-20 2.1E-24 197.3 14.7 138 537-785 66-216 (298)
36 cd07219 Pat_PNPLA1 Patatin-lik 99.8 8.7E-20 1.9E-24 201.9 14.2 169 539-784 11-182 (382)
37 cd07231 Pat_SDP1-like Sugar-De 99.8 2.8E-19 6E-24 193.2 17.0 173 508-784 30-227 (323)
38 cd07204 Pat_PNPLA_like Patatin 99.8 1.1E-19 2.4E-24 196.2 13.9 165 543-784 2-169 (243)
39 cd07220 Pat_PNPLA2 Patatin-lik 99.8 5.7E-19 1.2E-23 189.6 13.8 166 542-784 6-174 (249)
40 KOG0472 Leucine-rich repeat pr 99.8 1E-21 2.2E-26 210.9 -10.3 246 119-382 62-308 (565)
41 cd07224 Pat_like Patatin-like 99.8 2.2E-18 4.7E-23 185.2 14.7 158 543-783 2-164 (233)
42 KOG0472 Leucine-rich repeat pr 99.8 1E-20 2.3E-25 203.3 -6.9 245 119-382 39-286 (565)
43 COG5064 SRP1 Karyopherin (impo 99.7 2.1E-18 4.6E-23 180.9 9.0 177 345-521 134-355 (526)
44 KOG2968 Predicted esterase of 99.7 7.9E-17 1.7E-21 187.2 17.9 184 540-808 839-1024(1158)
45 KOG0617 Ras suppressor protein 99.7 4E-19 8.7E-24 170.6 -5.2 165 119-286 27-194 (264)
46 COG4667 Predicted esterase of 99.7 1.1E-15 2.3E-20 157.6 18.4 170 539-787 10-182 (292)
47 KOG0166 Karyopherin (importin) 99.7 6.1E-17 1.3E-21 184.7 10.1 178 345-522 129-351 (514)
48 cd07223 Pat_PNPLA5-mammals Pat 99.7 5.4E-16 1.2E-20 170.5 14.9 169 538-783 7-178 (405)
49 PRK15387 E3 ubiquitin-protein 99.7 2.8E-16 6.1E-21 192.0 13.3 217 125-382 222-456 (788)
50 cd01819 Patatin_and_cPLA2 Pata 99.7 2.3E-16 5.1E-21 158.7 10.3 142 543-803 1-154 (155)
51 KOG0617 Ras suppressor protein 99.7 9.7E-19 2.1E-23 168.0 -6.6 162 145-308 29-194 (264)
52 KOG2214 Predicted esterase of 99.6 1.2E-15 2.6E-20 169.8 14.6 188 537-794 171-377 (543)
53 PRK15370 E3 ubiquitin-protein 99.6 5.3E-16 1.1E-20 190.9 11.8 224 125-383 199-427 (754)
54 TIGR03607 patatin-related prot 99.6 2.3E-14 5E-19 172.8 19.9 219 541-793 4-298 (739)
55 PRK15370 E3 ubiquitin-protein 99.6 3.8E-15 8.3E-20 183.4 12.1 221 125-382 178-399 (754)
56 PRK15387 E3 ubiquitin-protein 99.6 1E-14 2.2E-19 178.4 14.6 212 125-382 201-413 (788)
57 COG5064 SRP1 Karyopherin (impo 99.6 7E-16 1.5E-20 162.2 3.7 177 346-522 221-398 (526)
58 KOG0513 Ca2+-independent phosp 99.6 5.7E-15 1.2E-19 171.1 10.2 278 534-858 29-376 (503)
59 KOG0618 Serine/threonine phosp 99.6 9.1E-17 2E-21 189.6 -4.8 209 125-341 219-432 (1081)
60 KOG0618 Serine/threonine phosp 99.6 5E-16 1.1E-20 183.4 -0.2 224 149-382 219-463 (1081)
61 PLN03210 Resistant to P. syrin 99.5 1.1E-13 2.4E-18 182.1 19.1 33 266-298 778-812 (1153)
62 KOG0166 Karyopherin (importin) 99.5 2.8E-14 6.1E-19 163.0 7.3 177 345-521 214-392 (514)
63 KOG0532 Leucine-rich repeat (L 99.5 3.7E-15 8E-20 167.6 -0.6 176 124-304 74-250 (722)
64 KOG4237 Extracellular matrix p 99.5 3E-15 6.6E-20 161.7 -3.1 131 91-231 66-199 (498)
65 KOG4237 Extracellular matrix p 99.4 5.3E-15 1.2E-19 159.8 -3.4 256 125-395 67-370 (498)
66 PLN03210 Resistant to P. syrin 99.4 1.6E-12 3.4E-17 171.3 18.1 254 115-383 548-814 (1153)
67 cd00116 LRR_RI Leucine-rich re 99.4 8E-14 1.7E-18 158.7 3.7 212 119-331 45-293 (319)
68 cd00116 LRR_RI Leucine-rich re 99.4 1.5E-13 3.3E-18 156.4 4.7 209 118-327 74-318 (319)
69 KOG0513 Ca2+-independent phosp 99.4 8.1E-13 1.8E-17 153.4 8.1 212 534-806 288-503 (503)
70 KOG0532 Leucine-rich repeat (L 99.3 1.6E-13 3.6E-18 154.6 -2.8 175 119-298 92-270 (722)
71 KOG1259 Nischarin, modulator o 99.3 5.1E-13 1.1E-17 139.3 0.2 208 119-332 176-415 (490)
72 KOG3207 Beta-tubulin folding c 99.2 1.8E-12 3.9E-17 142.5 -0.2 206 121-329 117-339 (505)
73 COG4886 Leucine-rich repeat (L 99.2 1.4E-11 3.1E-16 144.6 6.4 196 129-333 97-294 (394)
74 KOG3207 Beta-tubulin folding c 99.2 3.1E-12 6.7E-17 140.7 0.4 183 146-330 118-315 (505)
75 COG4886 Leucine-rich repeat (L 99.2 1.3E-11 2.9E-16 145.0 5.7 182 119-303 110-292 (394)
76 KOG1259 Nischarin, modulator o 99.2 4.2E-12 9.2E-17 132.6 0.5 136 169-306 279-417 (490)
77 KOG1909 Ran GTPase-activating 99.1 8.6E-12 1.9E-16 134.0 0.7 235 88-328 26-310 (382)
78 PF14580 LRR_9: Leucine-rich r 99.1 2.4E-11 5.2E-16 123.4 3.7 103 175-279 20-126 (175)
79 PF14580 LRR_9: Leucine-rich r 99.1 3.9E-11 8.4E-16 121.9 4.1 140 181-324 4-148 (175)
80 KOG1909 Ran GTPase-activating 98.9 1.9E-10 4.1E-15 123.8 1.4 237 119-383 24-310 (382)
81 KOG0531 Protein phosphatase 1, 98.8 3.7E-10 8E-15 133.1 -1.7 197 122-330 69-269 (414)
82 PLN03200 cellulose synthase-in 98.8 2E-08 4.2E-13 132.2 12.4 154 368-521 404-558 (2102)
83 KOG0531 Protein phosphatase 1, 98.8 5.4E-10 1.2E-14 131.7 -1.7 178 121-305 91-272 (414)
84 KOG1859 Leucine-rich repeat pr 98.8 9.3E-11 2E-15 135.5 -8.9 130 198-332 165-295 (1096)
85 PLN03150 hypothetical protein; 98.6 4.4E-08 9.6E-13 120.9 8.5 105 150-255 419-527 (623)
86 KOG4658 Apoptotic ATPase [Sign 98.6 2.9E-08 6.2E-13 125.0 6.9 153 122-276 520-678 (889)
87 PLN03200 cellulose synthase-in 98.6 1.5E-07 3.2E-12 124.2 13.1 161 370-530 364-526 (2102)
88 PLN03150 hypothetical protein; 98.6 9.8E-08 2.1E-12 117.8 9.8 105 175-279 419-528 (623)
89 KOG1859 Leucine-rich repeat pr 98.6 1.1E-09 2.4E-14 126.8 -7.2 155 167-331 102-269 (1096)
90 KOG2982 Uncharacterized conser 98.5 3.4E-08 7.3E-13 104.0 1.9 89 120-209 66-158 (418)
91 KOG4224 Armadillo repeat prote 98.5 5.1E-07 1.1E-11 97.1 10.7 174 348-524 148-323 (550)
92 cd00020 ARM Armadillo/beta-cat 98.5 6.4E-07 1.4E-11 85.7 10.4 118 404-521 2-119 (120)
93 KOG4224 Armadillo repeat prote 98.5 1.3E-07 2.7E-12 101.7 4.5 156 374-531 91-246 (550)
94 KOG3773 Adiponutrin and relate 98.4 3.4E-07 7.5E-12 98.2 5.5 166 541-784 7-175 (354)
95 KOG4658 Apoptotic ATPase [Sign 98.3 2.5E-07 5.5E-12 116.6 3.7 178 123-302 543-731 (889)
96 PF13855 LRR_8: Leucine rich r 98.3 3.6E-07 7.9E-12 76.4 2.9 59 126-185 2-60 (61)
97 KOG4579 Leucine-rich repeat (L 98.3 4.5E-08 9.8E-13 92.1 -3.3 106 176-281 29-138 (177)
98 PF13855 LRR_8: Leucine rich r 98.2 6.7E-07 1.5E-11 74.7 2.9 59 174-232 1-61 (61)
99 KOG4579 Leucine-rich repeat (L 98.2 5.7E-08 1.2E-12 91.4 -4.4 111 126-238 28-141 (177)
100 COG5238 RNA1 Ran GTPase-activa 98.2 6.9E-07 1.5E-11 93.2 2.0 221 68-302 14-286 (388)
101 KOG2982 Uncharacterized conser 98.1 8.6E-07 1.9E-11 93.7 2.0 84 148-231 70-157 (418)
102 KOG2120 SCF ubiquitin ligase, 98.1 1.2E-07 2.6E-12 99.9 -5.5 173 125-298 185-373 (419)
103 KOG1644 U2-associated snRNP A' 98.1 5.1E-06 1.1E-10 83.7 5.9 99 198-297 43-149 (233)
104 COG5238 RNA1 Ran GTPase-activa 98.0 3.4E-06 7.4E-11 88.2 3.1 183 119-302 24-256 (388)
105 cd00020 ARM Armadillo/beta-cat 98.0 3.7E-05 8E-10 73.4 9.4 112 368-479 7-119 (120)
106 PF04826 Arm_2: Armadillo-like 97.9 0.00013 2.8E-09 79.1 12.8 156 369-530 13-171 (254)
107 KOG1644 U2-associated snRNP A' 97.9 2.3E-05 5E-10 79.1 6.2 102 174-276 42-150 (233)
108 PRK15386 type III secretion pr 97.8 3.6E-05 7.9E-10 87.7 8.1 134 121-277 48-188 (426)
109 PF12799 LRR_4: Leucine Rich r 97.8 2.2E-05 4.8E-10 60.5 3.8 37 175-211 2-38 (44)
110 PF12799 LRR_4: Leucine Rich r 97.8 2.5E-05 5.3E-10 60.2 3.9 38 198-235 2-39 (44)
111 PF05804 KAP: Kinesin-associat 97.7 0.00018 3.9E-09 88.1 12.2 144 384-531 265-408 (708)
112 KOG2120 SCF ubiquitin ligase, 97.7 2E-06 4.3E-11 91.0 -4.1 158 119-276 204-373 (419)
113 PRK15386 type III secretion pr 97.7 0.00011 2.3E-09 83.9 9.2 133 145-299 48-188 (426)
114 KOG3665 ZYG-1-like serine/thre 97.7 7.6E-05 1.6E-09 92.2 8.0 136 196-332 121-266 (699)
115 cd00147 cPLA2_like Cytosolic p 97.7 0.00087 1.9E-08 77.8 15.7 63 537-602 40-104 (438)
116 KOG3665 ZYG-1-like serine/thre 97.6 3.1E-05 6.7E-10 95.6 3.4 128 174-302 122-264 (699)
117 PF05804 KAP: Kinesin-associat 97.5 0.00069 1.5E-08 83.1 12.3 172 367-556 289-461 (708)
118 KOG2739 Leucine-rich acidic nu 97.3 7.7E-05 1.7E-09 78.7 1.7 103 169-272 38-149 (260)
119 KOG4199 Uncharacterized conser 97.3 0.0015 3.2E-08 70.7 11.0 167 365-532 280-454 (461)
120 KOG1048 Neural adherens juncti 97.2 0.0015 3.2E-08 78.6 10.8 118 413-530 237-357 (717)
121 PF10508 Proteasom_PSMB: Prote 97.2 0.0025 5.5E-08 76.9 13.0 215 369-612 78-296 (503)
122 KOG2739 Leucine-rich acidic nu 97.2 0.00019 4E-09 75.9 2.1 62 241-302 63-130 (260)
123 KOG2123 Uncharacterized conser 97.0 4.8E-05 1E-09 80.1 -4.0 77 199-277 21-99 (388)
124 PF00514 Arm: Armadillo/beta-c 97.0 0.0014 3E-08 49.7 5.0 39 441-479 2-40 (41)
125 KOG2123 Uncharacterized conser 96.8 6.9E-05 1.5E-09 78.9 -4.9 79 221-301 20-101 (388)
126 KOG4199 Uncharacterized conser 96.6 0.013 2.8E-07 63.6 10.4 143 381-524 255-405 (461)
127 KOG4308 LRR-containing protein 96.3 4.1E-05 8.9E-10 90.7 -11.5 176 127-302 89-304 (478)
128 PF13306 LRR_5: Leucine rich r 95.8 0.023 5E-07 55.0 6.8 84 119-206 6-90 (129)
129 PF04826 Arm_2: Armadillo-like 95.7 0.034 7.4E-07 60.5 8.6 154 362-521 48-204 (254)
130 KOG4308 LRR-containing protein 95.7 0.00019 4.1E-09 85.1 -9.6 181 150-330 88-304 (478)
131 PF10508 Proteasom_PSMB: Prote 95.7 0.029 6.3E-07 67.9 8.8 145 362-507 113-257 (503)
132 KOG2160 Armadillo/beta-catenin 95.6 0.079 1.7E-06 58.9 10.9 139 383-521 98-239 (342)
133 PF13306 LRR_5: Leucine rich r 95.5 0.036 7.9E-07 53.5 7.0 103 144-252 7-112 (129)
134 PF13646 HEAT_2: HEAT repeats; 95.1 0.099 2.1E-06 46.7 8.0 85 412-518 2-88 (88)
135 KOG2160 Armadillo/beta-catenin 94.9 0.13 2.8E-06 57.2 9.7 157 367-523 123-283 (342)
136 KOG4500 Rho/Rac GTPase guanine 94.9 0.074 1.6E-06 59.7 7.7 160 367-526 86-257 (604)
137 KOG4500 Rho/Rac GTPase guanine 94.8 0.2 4.4E-06 56.4 10.8 118 403-522 308-431 (604)
138 KOG4646 Uncharacterized conser 94.7 0.11 2.4E-06 49.4 7.2 123 379-502 28-150 (173)
139 PF13513 HEAT_EZ: HEAT-like re 94.6 0.025 5.4E-07 45.9 2.6 55 465-520 1-55 (55)
140 PRK09687 putative lyase; Provi 94.5 0.21 4.5E-06 55.5 10.3 28 370-397 56-83 (280)
141 smart00185 ARM Armadillo/beta- 94.5 0.067 1.5E-06 40.1 4.5 38 443-480 4-41 (41)
142 PF00514 Arm: Armadillo/beta-c 94.4 0.022 4.7E-07 43.1 1.6 37 485-521 4-40 (41)
143 KOG3678 SARM protein (with ste 94.3 0.1 2.2E-06 58.9 7.1 160 369-531 181-345 (832)
144 PRK09687 putative lyase; Provi 94.0 0.3 6.5E-06 54.3 10.2 135 369-524 24-159 (280)
145 KOG0473 Leucine-rich repeat pr 94.0 0.0015 3.2E-08 67.5 -7.2 84 146-231 39-122 (326)
146 KOG0473 Leucine-rich repeat pr 93.8 0.0016 3.4E-08 67.3 -7.4 74 175-248 43-116 (326)
147 PF00560 LRR_1: Leucine Rich R 93.7 0.027 5.9E-07 36.3 0.7 19 176-194 2-20 (22)
148 PF00560 LRR_1: Leucine Rich R 93.3 0.038 8.3E-07 35.6 0.9 18 222-239 2-19 (22)
149 KOG1048 Neural adherens juncti 93.1 0.17 3.7E-06 61.4 6.7 159 373-533 524-695 (717)
150 PF13513 HEAT_EZ: HEAT-like re 92.9 0.35 7.6E-06 39.1 6.3 53 425-478 3-55 (55)
151 KOG4341 F-box protein containi 92.3 0.0083 1.8E-07 67.3 -5.2 269 119-393 158-448 (483)
152 KOG1947 Leucine rich repeat pr 92.0 0.06 1.3E-06 64.8 1.1 108 148-255 187-307 (482)
153 KOG1222 Kinesin associated pro 91.5 1.1 2.3E-05 51.3 9.9 136 384-523 279-414 (791)
154 cd07202 cPLA2_Grp-IVC Group IV 91.5 0.55 1.2E-05 53.9 7.9 62 538-602 38-103 (430)
155 KOG1293 Proteins containing ar 91.4 0.5 1.1E-05 56.3 7.6 151 373-523 382-534 (678)
156 KOG2122 Beta-catenin-binding p 91.3 0.23 5E-06 63.4 5.0 163 362-524 431-603 (2195)
157 PF13504 LRR_7: Leucine rich r 91.2 0.14 3E-06 30.7 1.5 15 175-189 2-16 (17)
158 KOG1947 Leucine rich repeat pr 91.0 0.092 2E-06 63.2 1.2 204 121-326 184-437 (482)
159 KOG0168 Putative ubiquitin fus 90.6 0.56 1.2E-05 57.2 7.1 148 370-523 213-365 (1051)
160 PF11698 V-ATPase_H_C: V-ATPas 90.3 0.31 6.6E-06 46.1 3.7 70 451-520 43-113 (119)
161 PF13646 HEAT_2: HEAT repeats; 89.6 0.79 1.7E-05 40.8 5.8 61 453-524 1-62 (88)
162 PF13504 LRR_7: Leucine rich r 89.5 0.22 4.8E-06 29.8 1.4 12 199-210 3-14 (17)
163 cd07201 cPLA2_Grp-IVB-IVD-IVE- 87.8 0.83 1.8E-05 54.1 5.8 73 539-614 53-127 (541)
164 PRK13800 putative oxidoreducta 87.0 3.4 7.5E-05 53.9 11.5 85 372-478 718-802 (897)
165 smart00185 ARM Armadillo/beta- 86.8 0.5 1.1E-05 35.2 2.3 36 486-521 5-40 (41)
166 KOG1293 Proteins containing ar 86.4 2.6 5.7E-05 50.4 8.8 116 369-484 420-537 (678)
167 PRK13800 putative oxidoreducta 86.3 1.9 4.2E-05 56.2 8.6 131 370-518 744-895 (897)
168 smart00369 LRR_TYP Leucine-ric 85.6 0.63 1.4E-05 31.2 2.0 18 174-191 2-19 (26)
169 smart00370 LRR Leucine-rich re 85.6 0.63 1.4E-05 31.2 2.0 18 174-191 2-19 (26)
170 KOG2122 Beta-catenin-binding p 84.8 0.87 1.9E-05 58.5 4.1 125 358-482 471-603 (2195)
171 PF03224 V-ATPase_H_N: V-ATPas 83.6 3.7 8E-05 46.6 8.3 150 372-523 109-270 (312)
172 smart00370 LRR Leucine-rich re 83.4 1 2.2E-05 30.2 2.2 18 197-214 2-19 (26)
173 smart00369 LRR_TYP Leucine-ric 83.4 1 2.2E-05 30.2 2.2 18 197-214 2-19 (26)
174 KOG4646 Uncharacterized conser 82.8 2.9 6.3E-05 40.1 5.7 82 379-460 69-150 (173)
175 PF14664 RICTOR_N: Rapamycin-i 82.5 5.5 0.00012 46.1 9.2 157 370-531 27-185 (371)
176 cd07200 cPLA2_Grp-IVA Group IV 82.5 1.1 2.4E-05 53.1 3.6 61 539-602 44-109 (505)
177 TIGR02270 conserved hypothetic 82.4 7.4 0.00016 45.7 10.3 122 370-524 88-209 (410)
178 KOG4341 F-box protein containi 81.7 0.73 1.6E-05 52.3 1.6 174 122-295 265-459 (483)
179 KOG2023 Nuclear transport rece 81.6 2.8 6E-05 50.1 6.3 113 410-523 129-245 (885)
180 KOG2171 Karyopherin (importin) 81.2 4.5 9.7E-05 51.6 8.3 153 370-523 350-505 (1075)
181 PF02985 HEAT: HEAT repeat; I 80.0 2.7 5.9E-05 29.5 3.6 29 452-480 1-29 (31)
182 PF11698 V-ATPase_H_C: V-ATPas 78.3 4.1 8.8E-05 38.7 5.2 70 411-480 45-115 (119)
183 PF02985 HEAT: HEAT repeat; I 76.3 2.9 6.2E-05 29.4 2.8 29 494-522 1-29 (31)
184 KOG0168 Putative ubiquitin fus 75.5 14 0.0003 45.8 9.7 103 422-524 181-286 (1051)
185 PF01602 Adaptin_N: Adaptin N 75.3 12 0.00025 45.8 9.8 136 370-520 44-179 (526)
186 KOG2023 Nuclear transport rece 75.3 12 0.00025 45.2 8.8 157 366-524 126-287 (885)
187 KOG3864 Uncharacterized conser 75.1 0.38 8.3E-06 49.5 -2.7 34 127-160 103-136 (221)
188 PF01735 PLA2_B: Lysophospholi 74.7 3.5 7.7E-05 49.5 4.7 51 542-592 2-58 (491)
189 PF12348 CLASP_N: CLASP N term 74.0 9.6 0.00021 40.8 7.6 142 377-524 62-208 (228)
190 TIGR02270 conserved hypothetic 72.1 5.7 0.00012 46.6 5.5 116 411-549 88-203 (410)
191 smart00022 PLAc Cytoplasmic ph 72.0 3.4 7.4E-05 49.9 3.7 58 539-596 76-138 (549)
192 PF03224 V-ATPase_H_N: V-ATPas 71.9 11 0.00023 42.8 7.5 151 379-531 68-236 (312)
193 KOG1222 Kinesin associated pro 70.1 27 0.00059 40.5 9.8 144 387-531 524-673 (791)
194 PF12755 Vac14_Fab1_bd: Vacuol 69.5 18 0.00039 33.2 7.0 88 429-518 6-93 (97)
195 COG5096 Vesicle coat complex, 67.4 22 0.00048 44.5 9.3 101 413-523 96-196 (757)
196 smart00364 LRR_BAC Leucine-ric 66.4 3.7 8E-05 27.6 1.3 16 175-190 3-18 (26)
197 PF11701 UNC45-central: Myosin 65.7 15 0.00033 36.9 6.4 100 418-519 52-156 (157)
198 PF08569 Mo25: Mo25-like; Int 65.6 48 0.001 37.9 10.9 144 381-524 136-285 (335)
199 cd00256 VATPase_H VATPase_H, r 65.5 5.6 0.00012 46.6 3.6 70 451-520 353-423 (429)
200 KOG2171 Karyopherin (importin) 65.4 32 0.0007 44.3 10.2 127 379-506 400-529 (1075)
201 smart00364 LRR_BAC Leucine-ric 64.4 4.3 9.2E-05 27.4 1.3 17 198-214 3-19 (26)
202 KOG0213 Splicing factor 3b, su 64.4 8.3 0.00018 46.8 4.6 138 380-521 811-953 (1172)
203 KOG1241 Karyopherin (importin) 64.4 10 0.00022 46.4 5.4 120 403-523 354-478 (859)
204 KOG1325 Lysophospholipase [Lip 64.1 3.3 7.2E-05 49.4 1.4 60 539-598 48-112 (571)
205 PF01602 Adaptin_N: Adaptin N 62.6 8.6 0.00019 47.0 4.7 148 370-525 116-263 (526)
206 smart00365 LRR_SD22 Leucine-ri 62.5 5.6 0.00012 26.8 1.7 19 288-306 2-20 (26)
207 COG5181 HSH155 U2 snRNP splice 61.3 8 0.00017 46.0 3.7 141 379-521 615-758 (975)
208 KOG3864 Uncharacterized conser 61.3 1.9 4.2E-05 44.5 -1.0 32 266-297 151-185 (221)
209 cd07203 cPLA2_Fungal_PLB Funga 60.8 4.9 0.00011 48.2 2.0 63 539-601 63-134 (552)
210 PF11841 DUF3361: Domain of un 60.5 60 0.0013 32.6 9.2 116 403-519 5-128 (160)
211 KOG3678 SARM protein (with ste 59.2 32 0.00069 39.7 7.8 124 403-530 174-303 (832)
212 PF14668 RICTOR_V: Rapamycin-i 57.9 18 0.0004 31.2 4.5 62 468-530 4-66 (73)
213 PF09759 Atx10homo_assoc: Spin 54.8 24 0.00052 32.6 5.0 63 427-489 4-68 (102)
214 PF09759 Atx10homo_assoc: Spin 54.6 41 0.0009 31.1 6.5 64 385-448 3-69 (102)
215 KOG2999 Regulator of Rac1, req 54.3 43 0.00094 39.7 8.0 143 370-513 85-233 (713)
216 PTZ00429 beta-adaptin; Provisi 51.2 55 0.0012 41.6 9.1 134 375-522 75-208 (746)
217 KOG3763 mRNA export factor TAP 50.8 6.8 0.00015 46.4 1.0 63 195-258 216-285 (585)
218 PF13516 LRR_6: Leucine Rich r 50.6 11 0.00025 24.4 1.7 23 370-393 1-23 (24)
219 PF05536 Neurochondrin: Neuroc 50.6 48 0.001 40.6 8.2 99 383-483 72-171 (543)
220 smart00367 LRR_CC Leucine-rich 49.5 13 0.00028 24.8 1.8 25 370-394 1-25 (26)
221 TIGR01392 homoserO_Ac_trn homo 49.2 39 0.00084 38.9 7.0 55 536-593 69-147 (351)
222 KOG4231 Intracellular membrane 48.6 5 0.00011 46.5 -0.5 78 221-302 105-182 (763)
223 PRK00175 metX homoserine O-ace 48.6 30 0.00065 40.3 5.9 54 537-593 89-167 (379)
224 COG1413 FOG: HEAT repeat [Ener 48.1 73 0.0016 36.3 9.0 75 447-530 176-250 (335)
225 PF10165 Ric8: Guanine nucleot 46.4 32 0.0007 41.0 5.8 82 420-501 43-130 (446)
226 KOG2759 Vacuolar H+-ATPase V1 46.0 18 0.00038 41.6 3.2 70 451-520 366-436 (442)
227 PF12717 Cnd1: non-SMC mitotic 44.6 1.4E+02 0.0029 30.7 9.4 91 424-523 3-93 (178)
228 KOG2734 Uncharacterized conser 44.5 1E+02 0.0023 35.8 8.8 137 389-525 105-258 (536)
229 PRK13604 luxD acyl transferase 44.0 43 0.00093 37.6 5.9 51 537-592 62-127 (307)
230 COG5369 Uncharacterized conser 43.6 41 0.00089 39.8 5.7 136 387-523 408-546 (743)
231 KOG3763 mRNA export factor TAP 43.5 10 0.00022 45.0 0.9 61 266-330 218-284 (585)
232 PF12755 Vac14_Fab1_bd: Vacuol 41.7 63 0.0014 29.6 5.6 85 387-472 5-89 (97)
233 PF05728 UPF0227: Uncharacteri 40.2 35 0.00076 35.5 4.2 18 575-592 61-78 (187)
234 cd00256 VATPase_H VATPase_H, r 39.7 1.8E+02 0.0039 34.4 10.3 121 381-502 157-286 (429)
235 PF12348 CLASP_N: CLASP N term 39.2 1E+02 0.0022 32.7 7.9 108 409-523 53-161 (228)
236 COG1413 FOG: HEAT repeat [Ener 38.7 1.8E+02 0.0038 33.1 10.2 98 411-530 45-143 (335)
237 PF04063 DUF383: Domain of unk 38.6 2.7E+02 0.0058 29.1 10.4 123 383-506 10-160 (192)
238 PRK11071 esterase YqiA; Provis 38.4 81 0.0017 32.7 6.7 50 539-593 32-81 (190)
239 smart00368 LRR_RI Leucine rich 37.9 24 0.00052 24.1 1.7 13 175-187 3-15 (28)
240 cd00707 Pancreat_lipase_like P 37.5 66 0.0014 35.6 6.2 53 538-592 65-131 (275)
241 KOG4242 Predicted myosin-I-bin 37.2 53 0.0011 38.5 5.2 202 126-330 215-454 (553)
242 COG5369 Uncharacterized conser 36.8 1E+02 0.0022 36.7 7.4 90 392-481 455-546 (743)
243 KOG4413 26S proteasome regulat 36.6 55 0.0012 36.3 5.0 95 429-526 63-161 (524)
244 PLN02965 Probable pheophorbida 35.4 66 0.0014 34.8 5.8 53 538-593 29-92 (255)
245 PF12719 Cnd3: Nuclear condens 35.1 2.2E+02 0.0048 31.9 10.0 103 416-523 34-144 (298)
246 PF05536 Neurochondrin: Neuroc 35.1 2.3E+02 0.0049 34.9 10.7 117 412-531 8-137 (543)
247 COG5231 VMA13 Vacuolar H+-ATPa 34.7 26 0.00057 38.7 2.2 70 451-520 356-426 (432)
248 PF12717 Cnd1: non-SMC mitotic 34.2 1.4E+02 0.003 30.6 7.5 93 381-481 1-93 (178)
249 PTZ00429 beta-adaptin; Provisi 34.1 1.3E+02 0.0029 38.2 8.7 143 371-522 143-285 (746)
250 PF00931 NB-ARC: NB-ARC domain 33.0 16 0.00035 40.5 0.4 23 968-990 17-39 (287)
251 KOG0946 ER-Golgi vesicle-tethe 31.6 1.9E+02 0.0042 36.2 8.9 134 385-521 40-194 (970)
252 PF03575 Peptidase_S51: Peptid 31.2 39 0.00084 33.8 2.8 43 540-587 36-82 (154)
253 KOG1517 Guanine nucleotide bin 30.9 3.6E+02 0.0078 35.1 11.1 176 346-521 532-731 (1387)
254 PF11841 DUF3361: Domain of un 29.5 1.5E+02 0.0032 29.9 6.4 67 409-475 58-126 (160)
255 KOG1454 Predicted hydrolase/ac 29.5 94 0.002 35.4 5.8 51 539-593 86-148 (326)
256 KOG1061 Vesicle coat complex A 29.2 2.6E+02 0.0056 35.0 9.5 97 379-484 97-193 (734)
257 PF08045 CDC14: Cell division 28.8 1.9E+02 0.0042 31.6 7.7 82 425-506 107-189 (257)
258 PF00756 Esterase: Putative es 27.9 60 0.0013 35.0 3.8 19 575-593 117-135 (251)
259 KOG2973 Uncharacterized conser 27.8 1.8E+02 0.004 32.4 7.1 109 413-526 7-115 (353)
260 KOG0213 Splicing factor 3b, su 27.7 1.1E+02 0.0024 37.8 5.9 157 364-523 879-1066(1172)
261 PF14668 RICTOR_V: Rapamycin-i 26.2 1.7E+02 0.0037 25.4 5.3 53 385-437 4-57 (73)
262 KOG4535 HEAT and armadillo rep 25.7 64 0.0014 37.7 3.5 146 379-526 402-563 (728)
263 KOG4413 26S proteasome regulat 25.6 3.2E+02 0.0068 30.7 8.4 94 369-462 129-224 (524)
264 KOG1077 Vesicle coat complex A 25.2 2.9E+02 0.0062 34.3 8.7 98 380-482 253-360 (938)
265 TIGR00864 PCC polycystin catio 24.6 50 0.0011 47.1 2.8 41 272-312 1-43 (2740)
266 PRK05282 (alpha)-aspartyl dipe 24.0 80 0.0017 34.0 3.7 15 576-590 115-129 (233)
267 TIGR03343 biphenyl_bphD 2-hydr 23.0 1.4E+02 0.0031 32.4 5.8 33 556-592 88-120 (282)
268 PF13245 AAA_19: Part of AAA d 22.5 46 0.00099 29.0 1.3 19 969-987 9-27 (76)
269 PF01764 Lipase_3: Lipase (cla 21.9 68 0.0015 31.0 2.5 17 576-592 67-83 (140)
270 PRK08775 homoserine O-acetyltr 21.9 2E+02 0.0043 32.8 6.8 53 538-593 98-158 (343)
271 PF06371 Drf_GBD: Diaphanous G 21.4 1.2E+02 0.0026 31.1 4.4 76 403-479 101-186 (187)
272 smart00827 PKS_AT Acyl transfe 21.3 2.1E+02 0.0046 31.7 6.8 48 555-608 69-116 (298)
273 TIGR01836 PHA_synth_III_C poly 21.0 1.9E+02 0.004 33.2 6.3 53 537-593 92-156 (350)
274 PF05004 IFRD: Interferon-rela 21.0 2.3E+02 0.0049 32.1 6.8 58 465-523 200-258 (309)
275 KOG1517 Guanine nucleotide bin 20.7 3.1E+02 0.0068 35.6 8.1 159 363-522 507-671 (1387)
276 KOG1242 Protein containing ada 20.5 2.4E+02 0.0052 34.3 6.9 109 411-524 218-326 (569)
277 KOG1060 Vesicle coat complex A 20.5 4.1E+02 0.009 33.5 8.9 143 370-524 289-460 (968)
278 COG1647 Esterase/lipase [Gener 20.4 55 0.0012 34.7 1.5 23 576-599 88-110 (243)
279 KOG1241 Karyopherin (importin) 20.3 2.2E+02 0.0047 35.6 6.6 73 451-523 364-436 (859)
No 1
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=100.00 E-value=1.5e-93 Score=770.92 Aligned_cols=762 Identities=69% Similarity=1.063 Sum_probs=601.9
Q ss_pred ccCCCchhHHHHHHHHHHHHhCCCCCCceEEeccCCCCCcccccccccccchhhcCCCCCccEEEeeCCCCCCCCccccc
Q 001385 67 WTSGEEEDQVALKLQSQLMVALPVPEDTVVVELAPQEEGDVATDAANVGVEMRVVKRREPLRAVVLTKGVGSGHLSDGIG 146 (1088)
Q Consensus 67 ~~~~~~~~~~~~~l~s~l~~~lp~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~l~ 146 (1088)
|+.++.+|++++++.+++++++|.+++.+++.++.... + +.+++.+++..-.+...++...+..-.-++.--+..+
T Consensus 1 ~t~~~s~d~~~~~l~~~~~v~~~~~~~~~~~~~~~~~~---~-~l~~v~l~~~~~~~~~~~r~~~~~~~~~s~~~y~~~~ 76 (763)
T KOG4231|consen 1 WTAGDSEDQVALRLESQLMVALPAPHDTVVVELKDDDE---G-GLENVGLEMRVEKRREPLRAVTLMKAVGSGQQYDGVG 76 (763)
T ss_pred CCcccchhHHHHHhhhhhhhccCCCCceEEEEeccccc---c-ccchhhhhhhhhhcccchhhhHHHhhhcCCcccCCcc
Confidence 78889999999999999999999999999999974432 3 5777888876666666666554443322333223344
Q ss_pred cCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCccccccCCCCCcEEEccCCCCCCCchhhcCCCCCcEEE
Q 001385 147 VLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPVLEKLYLDNNKLSTLPPELGAMKNLKVLI 226 (1088)
Q Consensus 147 ~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~ 226 (1088)
.+.+|-.+-++--.--........-.......+.+++|.+-..|..+..|+.|+.+.+-+|++..+|..++++.++..+.
T Consensus 77 ~~~~l~~~~~a~~ap~~~~~~~~~~~~~~~t~~s~s~~~~~~~~~~vt~l~~~~~~~~~~~k~s~~~~li~k~~~~~i~r 156 (763)
T KOG4231|consen 77 VLTRLMMMPAAIPAPAIDVASSCGVHWKTVTSLSLSGCGLLVMPVEVTELPLLEKLCLEHNKLSVLPPLIGKLKNLKILR 156 (763)
T ss_pred hheeeeeeeccCCCcchhhhhceeeeeeeeeecccccceeccChHHHHhhhhhhHHHHHHhhhccchhhhhhhhhHHHhc
Confidence 44555444433211000000011112334445555555555555555555555555555555555554444444433332
Q ss_pred ccCCcCcccchhccCCCCCCEEEeccCCCCCCcccccCCccccEEEecCCCCCCCccccCCCCCCeEEeeCCCCCCCccc
Q 001385 227 VDNNMLVCVPVELRECVGLVELSLEHNRLVRPLLDFRAMAELKILRLFGNPLEFLPEILPLLKLRHLSLANIRIVADENL 306 (1088)
Q Consensus 227 Ls~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~~~~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~L~~N~l~~~~~l 306 (1088)
+. +.|+.+..+.-+-++.+..|.....+.++ ..+ ..
T Consensus 157 ~~-----s~~d~l~~~~pf~e~s~~~~~~~~p~g~~----------------------~~~-------------~~---- 192 (763)
T KOG4231|consen 157 VD-----SVPDELRQCVPFVELSLEHNKLVRPLGDF----------------------RSL-------------GQ---- 192 (763)
T ss_pred cC-----CccccccccCCchhhhhhccCccCCCccc----------------------ccc-------------cC----
Confidence 22 22222222222222222222222111000 000 00
Q ss_pred cchhhhhcCcCCccccccccchhhhHHhhhcccCCCCcchhHHHhhhhcCCCCccccccccccccccceeeccCChhhhh
Q 001385 307 RSVNVQIEMENNSYFGASRHKLSAFFSLIFRFSSCHHPLLASALAKIMQDQENRVVVGKDENAVRQLISMISSDNRHVVE 386 (1088)
Q Consensus 307 ~~l~~~~~l~~l~~l~l~~n~l~~~~~~l~~l~~l~~l~l~~~L~~i~~l~~N~l~ip~~~~~Lp~L~~L~Ls~N~~v~~ 386 (1088)
.-.+-.++.-+...++...+.+|+-+++.++..+..+.+..++..|...+...-.....++...-|+ .++.+
T Consensus 193 -------~~~~ts~fg~S~~~lSn~~~~~Fk~~~~~~~~~~~~fv~k~e~e~n~~~iGk~~~~I~~~~~~ieS~-~hvVe 264 (763)
T KOG4231|consen 193 -------RAENTSYFGASRHKLSNFSPLIFKSSSCHHPLLASTFVKKMEDEGNRSVIGKDENAIRQLISMIESD-QHVVE 264 (763)
T ss_pred -------cccccccccchhhhhhccchHhhccccccchhHHHHHHHHhhCcccceeecccchhhhhhccccccc-chhhc
Confidence 0122334555666777777888888889888888889999889888876666655566676666655 77889
Q ss_pred hHHHHhccccCCchhhHHHHHCCCcHHHHHHhccCChHHHHHHHHHHHhhhccChHHHHHHhhhhhHHHHHHHhcCCChh
Q 001385 387 QACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHKNPE 466 (1088)
Q Consensus 387 ~a~~~L~~L~~~~~~~~~l~~~~~~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd~~~~~v~~~g~lp~L~~Ll~~~~~~ 466 (1088)
.++.++..++.+.....+++.+..+.+-...++...+. +...++.+..+.+.++...|+.........|+.++.+.+++
T Consensus 265 k~~~~~~s~~~~~~~t~ql~k~~l~~pTe~v~~l~~~~-I~~l~~~v~~~~~~s~s~~Qe~~~K~~~~~lk~~~a~~n~~ 343 (763)
T KOG4231|consen 265 KACVALSSLARDVGVTMQLMKCDLMKPTETVLKLSSPD-IISLLQVVVTLAFVSDSVSQEMLTKDMLKALKSLCAHKNPE 343 (763)
T ss_pred ccccccccHHHHHHHHHHHHHHHhcCcchhhhhhcccc-HhhHHHHHhcCCchhhhHHhhhhHHHHHHHHHHHhcccChH
Confidence 99988888887766668888888888766555555555 66678999999999999999999889999999999999999
Q ss_pred HHHHHHHHHhhhhccccccceeecccChhhhhHhhhcCCchhHHHHHHHHHHhhcchHHHHHhhhcCCCCCCCceEEEec
Q 001385 467 VQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGENESLRRAIRGRQVPKQGLRILSMD 546 (1088)
Q Consensus 467 vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~r~~~~~~~~~~~~~riLsLd 546 (1088)
+|+.|+.+++|+++|.++|+....+..+...+++++...++++.+.+..|++.+++++-+++.+++++++++|+|||++|
T Consensus 344 l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~~~eil~~~~~~~~vkg~G~rILSiD 423 (763)
T KOG4231|consen 344 LQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILGENEILRRSIKGRQVKGQGLRILSID 423 (763)
T ss_pred HHHHHHHHHHHheecccccccccCChHHHHHHHHHhcccccccchhhhHHHHHhhhhHHHHhhccccccCCCceEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhcCCCCHHHHHHHHHHhhccccCCCCCCCchhhhHH
Q 001385 547 GGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVFAEPFPKDNEAATWR 626 (1088)
Q Consensus 547 GGG~RG~~~~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~~~~s~~e~~~~y~~~~~~iF~~~~~~~~~~~~w~ 626 (1088)
|||+||++++++|+.||+..|++||+.||+|||+|||||+|++|+..+|+.+||+++|+++++.+|++..+.+++..+|.
T Consensus 424 GGGtrG~~~lqiL~kieklsgKpIheLFD~ICGvSTG~ilA~~Lg~k~m~l~eCeEiY~~lgk~vFsq~v~~g~~~~sw~ 503 (763)
T KOG4231|consen 424 GGGTRGLATLQILKKIEKLSGKPIHELFDLICGVSTGGILAIALGVKLMTLEECEEIYKNLGKLVFSQSVPKGNEAASWI 503 (763)
T ss_pred CCCccchhHHHHHHHHHHhcCCcHHHHHHHHhccCchHHHHHHHHhcCccHHHHHHHHHHHhHHHhhccccccchhheeh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988887774
Q ss_pred HHHHHHhhcccccceeEeccCCCCHHHHHHHHHHHhcCCCCCchhccccCCCCEEEEEEeeeccC-CCccEEeecCCCCC
Q 001385 627 EKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVM-PAQPFIFRNYQYPA 705 (1088)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~Lk~~~~~~~g~~~~~~~~~~~~k~~vv~t~~d~~-~~~~~lf~ny~~~~ 705 (1088)
.++|++..++.+||++++ +++++......+++||+++|+|-++.. +.+||+||||++|.
T Consensus 504 -------------------Hs~y~~n~we~iLKem~g-ed~~mi~tsr~~~~PkvavVStiVn~~pT~qpfIFRNY~hp~ 563 (763)
T KOG4231|consen 504 -------------------HSKYSANEWERILKEMCG-EDGDMIITSRVKNVPKVAVVSTIVNVMPTAQPFIFRNYQHPV 563 (763)
T ss_pred -------------------hhhcchHHHHHHHHHHhh-hhhhHHHhhccCCCCceeehhhhhhcCCCccceeeeccCCCC
Confidence 478999999999999998 557777777788999999999998855 48999999999997
Q ss_pred CCCCCCccccCCCCccccCCCCCCCccccccccccCCCcchHHHHHHHhcCCCCCCCCccCCCceeeeCcccCCChHHHH
Q 001385 706 GTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLDDFSDDVFRWQDGAIVANNPTIFA 785 (1088)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dA~rASsAaP~yF~p~~~~~~~~vDGGl~~NNP~~~A 785 (1088)
+. .++|.|+|++.+|+|+|||+|||+||..|..++..|+|||+++|||+..|
T Consensus 564 G~----------------------------~Shy~Ggc~h~~WqAIrASsAAP~Yf~e~~lgn~l~QDGgi~aNNPta~A 615 (763)
T KOG4231|consen 564 GT----------------------------QSHYMGGCKHQVWQAIRASSAAPYYFDEFSLGNYLWQDGGIVANNPTAFA 615 (763)
T ss_pred Cc----------------------------chhhcccchHHHHHHHHhcccCCcchhhhccccceeccCcEeecCccHHH
Confidence 64 35788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCEEEEECCCCCCCCCCCCCccccccCccchhcccchHHHHHHHHHHcCCCCCCCEEEEccCCCCCCC
Q 001385 786 IREAQLLWPDTRIDCLVSIGCGSVPTKTRRGGWRYLDTGQVLIESACSVDRAEEALSTLLPMLPEIQYYRFNPVDERCEM 865 (1088)
Q Consensus 786 i~Ea~~~~p~~~i~~vvSlGTG~~~~~~~~~~w~~~~~~~~li~~~~~~d~~~~~~~~~~~~~~~~~YfR~np~~~~~~~ 865 (1088)
|+||+.+||+.+++|+||||||..+...+.+.|.+...++.|+++.++...+++.+.++.+++++..||||||.+.++ +
T Consensus 616 ~hEaklLWPD~~i~C~VSiGsGr~~t~Vr~~tv~yts~~~kL~~~i~SatdtEevh~~l~~mLPe~~YfRFNPvm~~~-~ 694 (763)
T KOG4231|consen 616 IHEAKLLWPDTKIDCLVSIGSGRVPTRVRKGTVRYTSTGQKLIESICSATDTEEVHSTLLPMLPEIQYFRFNPVMDRC-M 694 (763)
T ss_pred hhhhhccCCCCCccEEEEecCCcccccccCCceEEecHHHHHHHHHhcccchHHHHHhhhccCCchheEecchhhhcc-c
Confidence 999999999999999999999999999989999999999999998888888888888899999999999999999865 9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHhcCCcCCchhhhhhhccCCCCCCCCCCCCCCCCCcccc
Q 001385 866 ELDETDPAEWLKLEAAVDEYINNNSESFKNVCERLLLPFQQDEKWSENLKSQHFPRGKVSNTDEISPSLGWR 937 (1088)
Q Consensus 866 ~lD~~~~~~~~~l~~~t~~yl~~~~~~l~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 937 (1088)
+|||++++.|.+|+.++++|++.|.+.|+++|++|..++..+++|.++.. .+.+.|.+. -+..+.++|+
T Consensus 695 ~LDE~d~e~l~ql~~~~e~yI~rN~qk~k~vaerL~l~~~~~qk~~~~~~--~wm~lK~~~-ye~~p~~~~~ 763 (763)
T KOG4231|consen 695 ELDETDPEILLQLEAAIEEYIQRNPQKFKNVAERLTLPFLNDQKWCDLKP--RWMNLKLPR-YESSPSLGWR 763 (763)
T ss_pred CcCccCHHHHHHHHHHHHHHHHhChHHHHHHHHHhcCCcchhHHHhhhhH--HHHhccCcc-ccCCcccccC
Confidence 99999999999999999999999999999999999999999999995322 233445432 2345677775
No 2
>cd07211 Pat_PNPLA8 Patatin-like phospholipase domain containing protein 8. PNPLA8 is a Ca-independent myocardial phospholipase which maintains mitochondrial integrity. PNPLA8 is also known as iPLA2-gamma. In humans, it is predominantly expressed in heart tissue. iPLA2-gamma can catalyze both phospholipase A1 and A2 reactions (PLA1 and PLA2 respectively). This family includes PNPLA8 (iPLA2-gamma) from Homo sapiens and iPLA2-2 from Mus musculus.
Probab=100.00 E-value=7e-53 Score=473.94 Aligned_cols=302 Identities=47% Similarity=0.785 Sum_probs=247.7
Q ss_pred CCCCCCceEEEecCCCchHHHHHHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhcCCCCHHHHHHHHHHhhccccC
Q 001385 534 QVPKQGLRILSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVFA 613 (1088)
Q Consensus 534 ~~~~~~~riLsLdGGG~RG~~~~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~~~~s~~e~~~~y~~~~~~iF~ 613 (1088)
++.++++|||||||||+||+++++||++||+.++++++++||+|+|||||||||++++..+++++||.++|.+++.+||.
T Consensus 2 ~~~~~~~riLsLdGGGirG~~~~~vL~~Le~~~~~~i~~~fDli~GTStGgiiA~~la~~~~~~~e~~~~y~~~~~~iF~ 81 (308)
T cd07211 2 PVKGRGIRILSIDGGGTRGVVALEILRKIEKLTGKPIHELFDYICGVSTGAILAFLLGLKKMSLDECEELYRKLGKDVFS 81 (308)
T ss_pred CCCCCCcEEEEECCChHHHHHHHHHHHHHHHHhCCCchhhcCEEEecChhHHHHHHHhcccccHHHHHHHHHHHHHHhcC
Confidence 56788999999999999999999999999999999999999999999999999999998789999999999999999997
Q ss_pred CCCCCCchhhhHHHHHHHHhhcccccceeEeccCCCCHHHHHHHHHHHhcCCCCCchhcccc--CCCCEEEEEEeeeccC
Q 001385 614 EPFPKDNEAATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLIESSV--KNIPKVFTVSTLVNVM 691 (1088)
Q Consensus 614 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~Lk~~~~~~~g~~~~~~~~--~~~~k~~vv~t~~d~~ 691 (1088)
...+.. ...+.++.+++|+.+.++++|+++|++ ..+.+.. ...+++++++|.++..
T Consensus 82 ~~~~~~------------------~~~~~~~~~~~y~~~~l~~~l~~~~g~----~~l~~~~~~~~~p~~~v~st~~~~~ 139 (308)
T cd07211 82 QNTYIS------------------GTSRLVLSHAYYDTETWEKILKEMMGS----DELIDTSADPNCPKVACVSTQVNRT 139 (308)
T ss_pred CCcccc------------------chhhhhccCCccChHHHHHHHHHHhCC----ccccccccCCCCCEEEEEEEeccCC
Confidence 643211 001122457899999999999999953 3333322 3457888888888888
Q ss_pred CCccEEeecCCCCCCCCCCCccccCCCCccccCCCCCCCccccccccccCCCcchHHHHHHHhcCCCCCCCCccCCCcee
Q 001385 692 PAQPFIFRNYQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLDDFSDDVFRW 771 (1088)
Q Consensus 692 ~~~~~lf~ny~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dA~rASsAaP~yF~p~~~~~~~~ 771 (1088)
+.+|++|+||+++.+.. ..+.+.++.++|||+|||||||+||+|+++++..|
T Consensus 140 ~~~p~~f~ny~~~~~~~----------------------------~~~~~~~~~~l~dA~rASsAaP~~F~p~~i~~~~~ 191 (308)
T cd07211 140 PLKPYVFRNYNHPPGTR----------------------------SHYLGSCKHKLWEAIRASSAAPGYFEEFKLGNNLH 191 (308)
T ss_pred CCceEEEeCCCCCCCcc----------------------------cccCCcccccHHHHHHHhccchhcCCcEEECCCeE
Confidence 99999999998764321 01223446889999999999999999999999999
Q ss_pred eeCcccCCChHHHHHHHHHHhCCCCCCCEEEEECCCCCCCCCCCCCccccccCccc---hhcccchHHHHHHHHHHcCCC
Q 001385 772 QDGAIVANNPTIFAIREAQLLWPDTRIDCLVSIGCGSVPTKTRRGGWRYLDTGQVL---IESACSVDRAEEALSTLLPML 848 (1088)
Q Consensus 772 vDGGl~~NNP~~~Ai~Ea~~~~p~~~i~~vvSlGTG~~~~~~~~~~w~~~~~~~~l---i~~~~~~d~~~~~~~~~~~~~ 848 (1088)
+|||+.+|||+.+|+.||+.+||+.+++||||||||..+.......+++..|...+ +..+++++.+++.++.++
T Consensus 192 vDGGv~aNnP~~~a~~ea~~~~~~~~i~~vlSiGTG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--- 268 (308)
T cd07211 192 QDGGLLANNPTALALHEAKLLWPDTPIQCLVSVGTGRYPSSVRLETGGYTSLKTKLLNLIDSATDTERVHTALDDLL--- 268 (308)
T ss_pred EECCcccCCcHHHHHHHHHHhCCCCCCcEEEEeCCCCCCCcccchhhhhHHHHHHHHHHHHHccChHHHHHHHHHhc---
Confidence 99999999999999999999999999999999999998765432222223354443 445567788888877654
Q ss_pred CCCCEEEEccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhc
Q 001385 849 PEIQYYRFNPVDERCEMELDETDPAEWLKLEAAVDEYINNN 889 (1088)
Q Consensus 849 ~~~~YfR~np~~~~~~~~lD~~~~~~~~~l~~~t~~yl~~~ 889 (1088)
.+.+||||||+... ++++|+++++++++|++.|++|+++|
T Consensus 269 ~~~~Y~R~~~~~~~-~~~ld~~~~~~i~~l~~~~~~yl~~~ 308 (308)
T cd07211 269 PPDVYFRFNPVMSE-CVELDETRPEKLDQLQDDTLEYIKRN 308 (308)
T ss_pred CCCceEEecccccC-CCCcccCCHHHHHHHHHHHHHHHhcC
Confidence 47899999999864 48999999999999999999999865
No 3
>cd07215 Pat17_PNPLA8_PNPLA9_like2 Patatin-like phospholipase of bacteria. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=100.00 E-value=1.8e-50 Score=456.89 Aligned_cols=299 Identities=26% Similarity=0.421 Sum_probs=244.3
Q ss_pred eEEEecCCCchHHHHHHHHHHHHHhc-------CCCCCcccceEEecchHHHHHHHHhc------CCCCHHHHHHHHHHh
Q 001385 541 RILSMDGGGMKGLATVQILKEIEKGT-------GKRIHELFDLVCGTSTGGMLAIALAV------KLMTLDQCEEIYKNL 607 (1088)
Q Consensus 541 riLsLdGGG~RG~~~~~vL~~Le~~~-------~~~i~~~FDli~GTStG~iiA~~l~~------~~~s~~e~~~~y~~~ 607 (1088)
|||||||||+||+++++||++||+++ +.+++++||+|||||||||||++++. .+++++||.++|.+.
T Consensus 1 rILslDGGGirG~~~~~iL~~le~~l~~~~g~~~~~i~~~fDli~GTStGgiia~~l~~~~~~g~~~~s~~e~~~~y~~~ 80 (329)
T cd07215 1 RILSIDGGGIRGIIPATILVSVEEKLQKKTGNPEARLADYFDLVAGTSTGGILTCLYLCPNESGRPKFSAKEALNFYLER 80 (329)
T ss_pred CEEEEcCChHHHHHHHHHHHHHHHHHhhhcCCCCCcHhhccCeeeccCHHHHHHHHHhCCCCCCCCCcCHHHHHHHHHHh
Confidence 79999999999999999999999976 35789999999999999999999864 368999999999999
Q ss_pred hccccCCCCCCCchhhhHHHHHHHHhhcccccceeEeccCCCCHHHHHHHHHHHhcCCCCCchhccccCCCCEEEEEEee
Q 001385 608 GKLVFAEPFPKDNEAATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTL 687 (1088)
Q Consensus 608 ~~~iF~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~Lk~~~~~~~g~~~~~~~~~~~~k~~vv~t~ 687 (1088)
+.+||..+. |.. +. ...++.+++|+.+.|+++|+++| ++..+.+..++ +++++
T Consensus 81 ~~~IF~~~~--------~~~-~~---------~~~~~~~~~y~~~~L~~~L~~~f----g~~~l~d~~~~-----~~i~a 133 (329)
T cd07215 81 GNYIFKKKI--------WNK-IK---------SRGGFLNEKYSHKPLEEVLLEYF----GDTKLSELLKP-----CLITS 133 (329)
T ss_pred hHhhcccch--------hhh-hh---------hhccccccccCcHHHHHHHHHHh----CCCchhhhcCC-----ceEEe
Confidence 999997642 211 00 01134578999999999999999 45556665543 23455
Q ss_pred eccCCCccEEeecCCCCCCCCCCCccccCCCCccccCCCCCCCccccccccccCCCcchHHHHHHHhcCCCCCCCCccCC
Q 001385 688 VNVMPAQPFIFRNYQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLDDFSDD 767 (1088)
Q Consensus 688 ~d~~~~~~~lf~ny~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dA~rASsAaP~yF~p~~~~ 767 (1088)
+|+.+++|++|+++....+. ..++++|||+|||||||+||||++++
T Consensus 134 ~d~~~~~~~~f~~~~~~~~~----------------------------------~~~~~l~da~~ASsAaP~~F~p~~i~ 179 (329)
T cd07215 134 YDIERRSPHFFKSHTAIKNE----------------------------------QRDFYVRDVARATSAAPTYFEPARIH 179 (329)
T ss_pred eecCCCCceEecCcccCCCc----------------------------------ccCccHHHHhHHHhhcccccCceEee
Confidence 79999999999997643211 22577999999999999999999875
Q ss_pred C-----ceeeeCcccCCChHHHHHHHHHHhCC------CCCCCEEEEECCCCCCCCCC---CCCccccccCccchhc--c
Q 001385 768 V-----FRWQDGAIVANNPTIFAIREAQLLWP------DTRIDCLVSIGCGSVPTKTR---RGGWRYLDTGQVLIES--A 831 (1088)
Q Consensus 768 ~-----~~~vDGGl~~NNP~~~Ai~Ea~~~~p------~~~i~~vvSlGTG~~~~~~~---~~~w~~~~~~~~li~~--~ 831 (1088)
+ ..|+|||+.+|||+.+|+.||+.+|. +.+..+|||||||..+.... ..+|+...|..+++++ .
T Consensus 180 ~~~g~~~~~vDGGv~aNnP~~~a~~ea~~~~~~~~~~~~~~~i~vlSiGTG~~~~~~~~~~~~~wG~~~W~~~l~~~~~~ 259 (329)
T cd07215 180 SLTGEKYTLIDGGVFANNPTLCAYAEARKLKFEQPGKPTAKDMIILSLGTGKNKKSYTYEKVKDWGLLGWAKPLIDIMMD 259 (329)
T ss_pred cCCCcEEEEecCceecCCHHHHHHHHHHHhhccCcCCCCcCceEEEEecCCCCCCCCCHHHhcccCcccchHHHHHHHHh
Confidence 3 36899999999999999999999862 22345999999999865432 5789999999998884 3
Q ss_pred cchHHHHHHHHHHcC-CCCCCCEEEEccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHh
Q 001385 832 CSVDRAEEALSTLLP-MLPEIQYYRFNPVDERCEMELDETDPAEWLKLEAAVDEYINNNSESFKNVCERL 900 (1088)
Q Consensus 832 ~~~d~~~~~~~~~~~-~~~~~~YfR~np~~~~~~~~lD~~~~~~~~~l~~~t~~yl~~~~~~l~~~~~~L 900 (1088)
...+.++..++.++. ...+.+||||||.+....++||++++++++.|+..+++|++++.+.++++|++|
T Consensus 260 ~~~~~~d~~~~~l~~~~~~~~~Y~Ri~~~l~~~~~~lD~a~~~~i~~L~~~~~~~~~~~~~~i~~~~~~~ 329 (329)
T cd07215 260 GASQTVDYQLKQIFDAEGDQQQYLRIQPELEDADPEMDDASPENLEKLREVGQALAEDHKDQLDEIVDRL 329 (329)
T ss_pred hhHHHHHHHHHHHHhhcCCCCceEEEeCCCCCCccccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHhC
Confidence 456677888887775 334789999999987667889999999999999999999999999999999976
No 4
>cd07216 Pat17_PNPLA8_PNPLA9_like3 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=100.00 E-value=1.7e-49 Score=445.87 Aligned_cols=292 Identities=28% Similarity=0.420 Sum_probs=232.9
Q ss_pred ceEEEecCCCchHHHHHHHHHHHHHhcCC--------CCCcccceEEecchHHHHHHHHhcCCCCHHHHHHHHHHhhccc
Q 001385 540 LRILSMDGGGMKGLATVQILKEIEKGTGK--------RIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLV 611 (1088)
Q Consensus 540 ~riLsLdGGG~RG~~~~~vL~~Le~~~~~--------~i~~~FDli~GTStG~iiA~~l~~~~~s~~e~~~~y~~~~~~i 611 (1088)
+|||||||||+||+++++||++||++++. +++++||+|||||||||||++|+..+|+++||.++|.+++++|
T Consensus 1 ~rILslDGGGiRGl~~~~iL~~le~~l~~~~~~~~~~~~~~~fDli~GTStGgiiA~~l~~~~~t~~e~~~~y~~~~~~i 80 (309)
T cd07216 1 LNLLSLDGGGVRGLSSLLILKEIMERIDPKEGLDEPPKPCDYFDLIGGTSTGGLIAIMLGRLRMTVDECIDAYTRLAKKI 80 (309)
T ss_pred CcEEEEcCCchhHHHHHHHHHHHHHHhhhccccCCCCChhHhcCeeeeccHHHHHHHHhcccCCCHHHHHHHHHHHhHHh
Confidence 58999999999999999999999998763 7899999999999999999999987899999999999999999
Q ss_pred cCCCCCCCchhhhHHHHHHHHhhcccccceeEeccCCCCHHHHHHHHHHHhcCCCC--CchhccccCCCCEEEEEEeeec
Q 001385 612 FAEPFPKDNEAATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDG--DLLIESSVKNIPKVFTVSTLVN 689 (1088)
Q Consensus 612 F~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~Lk~~~~~~~g--~~~~~~~~~~~~k~~vv~t~~d 689 (1088)
|..+.... .......+++|+.+.+++++++++++..- +..+.+.....+++++++| +
T Consensus 81 F~~~~~~~-------------------~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~--~ 139 (309)
T cd07216 81 FSRKRLRL-------------------IIGDLRTGARFDSKKLAEAIKVILKELGNDEDDLLDEGEEDGCKVFVCAT--D 139 (309)
T ss_pred CCCCCccc-------------------cccccccCCCCChHHHHHHHHHHHHhcCCCchhhhccccccCCCEEEEEE--e
Confidence 97753221 01122346789999999999999863211 1111211134567777776 5
Q ss_pred cC-CCccEEeecCCCCCCCCCCCccccCCCCccccCCCCCCCccccccccccCCCcchHHHHHHHhcCCCCCCCCccC--
Q 001385 690 VM-PAQPFIFRNYQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLDDFSD-- 766 (1088)
Q Consensus 690 ~~-~~~~~lf~ny~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dA~rASsAaP~yF~p~~~-- 766 (1088)
.. +++|++|++|+.+...+ .+.++++|||+|||||||+||+|+++
T Consensus 140 ~~~~~~~~~f~~y~~~~~~~--------------------------------~~~~~~l~~a~rASsAaP~~f~p~~~~~ 187 (309)
T cd07216 140 KDVTGKAVRLRSYPSKDEPS--------------------------------LYKNATIWEAARATSAAPTFFDPVKIGP 187 (309)
T ss_pred eCCCCceEEEecCCCCCCCC--------------------------------cccCccHHHHHHHHhhhHhhCCCEEecC
Confidence 55 99999999998543210 13468899999999999999999999
Q ss_pred CCceeeeCcccCCChHHHHHHHHHHhC--CCCCCCEEEEECCCCCCCCCCCCCccccccCccchhcccchHHHHHHHHHH
Q 001385 767 DVFRWQDGAIVANNPTIFAIREAQLLW--PDTRIDCLVSIGCGSVPTKTRRGGWRYLDTGQVLIESACSVDRAEEALSTL 844 (1088)
Q Consensus 767 ~~~~~vDGGl~~NNP~~~Ai~Ea~~~~--p~~~i~~vvSlGTG~~~~~~~~~~w~~~~~~~~li~~~~~~d~~~~~~~~~ 844 (1088)
++..|+|||+.+|||+.+|+.||+.+| ++..++||||||||..+.......++...|...++++.++.+..+......
T Consensus 188 ~~~~~vDGGv~~NnP~~~a~~ea~~~~~~~~~~~~~vlSiGTG~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~ 267 (309)
T cd07216 188 GGRTFVDGGLGANNPIREVWSEAVSLWEGLARLVGCLVSIGTGTPSIKSLGRSAEGAGLLKGLKDLVTDTEAEAKRFSAE 267 (309)
T ss_pred CCceEecCCcccCCcHHHHHHHHHHHhCCCCCCccEEEEECCCCCCCcccccchhHHHHHHHHHHHhhChHHHHHHHHHH
Confidence 899999999999999999999999999 667788999999999877655444455666777888777777665555443
Q ss_pred c-CCCCCCCEEEEccCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 001385 845 L-PMLPEIQYYRFNPVDERCEMELDETDPAEWLKLEAAVDEYI 886 (1088)
Q Consensus 845 ~-~~~~~~~YfR~np~~~~~~~~lD~~~~~~~~~l~~~t~~yl 886 (1088)
+ ....+.+||||||.++.+++++|++ ++++.|+..|++|+
T Consensus 268 ~~~~~~~~~Y~R~n~~~~~~~~~ld~~--~~~~~l~~~t~~yl 308 (309)
T cd07216 268 HSELDEEGRYFRFNVPHGLEDVGLDEY--EKMEEIVSLTREYL 308 (309)
T ss_pred HhccCCCCeEEEECCCCCCCCCChhhh--ccHHHHHHHHHHhh
Confidence 2 2345889999999988778899996 46889999999997
No 5
>cd07214 Pat17_isozyme_like Patatin-like phospholipase of plants. Pat17 is an isozyme of patatin cloned from Solanum cardiophyllum. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue, and Nu = nucleophile). Patatin-like phospholipase are included in this group. Members of this family have also been found in vertebrates.
Probab=100.00 E-value=1.1e-48 Score=442.95 Aligned_cols=298 Identities=25% Similarity=0.375 Sum_probs=236.3
Q ss_pred CCCceEEEecCCCchHHHHHHHHHHHHHhc------CCCCCcccceEEecchHHHHHHHHhcC------CCCHHHHHHHH
Q 001385 537 KQGLRILSMDGGGMKGLATVQILKEIEKGT------GKRIHELFDLVCGTSTGGMLAIALAVK------LMTLDQCEEIY 604 (1088)
Q Consensus 537 ~~~~riLsLdGGG~RG~~~~~vL~~Le~~~------~~~i~~~FDli~GTStG~iiA~~l~~~------~~s~~e~~~~y 604 (1088)
++++|||||||||+||+++++||++||+++ +.+++++||+|||||||||||++|+.+ .++++|+.++|
T Consensus 1 ~~~~rILslDGGGiRGi~~a~iL~~lE~~l~~~~g~~~~i~~~FDliaGTStGgiiA~~la~~~~~~~p~~~~~e~~~~y 80 (349)
T cd07214 1 GKFITVLSIDGGGIRGIIPATILEFLEGKLQELDGPDARIADYFDVIAGTSTGGLITAMLTAPNENKRPLFAAKDIVQFY 80 (349)
T ss_pred CCceEEEEECCCchhhHHHHHHHHHHHHHHHHhcCCCCCHhHhCCEEeeCCHHHHHHHHHhcCCCCCCCccCHHHHHHHH
Confidence 356899999999999999999999999987 568999999999999999999999974 37899999999
Q ss_pred HHhhccccCCCCCCCchhhhHHHHHHHHhhcccccceeEeccCCCCHHHHHHHHHHHhcCCCCCchhccccCCCCEEEEE
Q 001385 605 KNLGKLVFAEPFPKDNEAATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLIESSVKNIPKVFTV 684 (1088)
Q Consensus 605 ~~~~~~iF~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~Lk~~~~~~~g~~~~~~~~~~~~k~~vv 684 (1088)
.+.+.+||..+.... ..|+..+. .+.+++|+++.|+++|+++| ++..+.+..++ ++
T Consensus 81 ~~~~~~iF~~~~~~~---~~~~~~~~------------~~~~~~y~~~~L~~~L~~~~----gd~~l~d~~~~-----v~ 136 (349)
T cd07214 81 LENGPKIFPQSTGQF---EDDRKKLR------------SLLGPKYDGVYLHDLLNELL----GDTRLSDTLTN-----VV 136 (349)
T ss_pred HHhhHHhcCCCcccc---hhHHHHHH------------HhccCccCcHHHHHHHHHHh----ccccHhhhCCc-----eE
Confidence 999999997642211 11222111 12368999999999999999 45566655443 34
Q ss_pred EeeeccCCCccEEeecCCCCCCCCCCCccccCCCCccccCCCCCCCccccccccccCCCcchHHHHHHHhcCCCCCCCCc
Q 001385 685 STLVNVMPAQPFIFRNYQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLDDF 764 (1088)
Q Consensus 685 ~t~~d~~~~~~~lf~ny~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dA~rASsAaP~yF~p~ 764 (1088)
++++|+.+++|++|++|+.+.+. ..++++|||||||||||+||||+
T Consensus 137 I~a~dl~~~~p~~F~~~~~~~~~----------------------------------~~~~~l~da~rASSAaPtyFpp~ 182 (349)
T cd07214 137 IPTFDIKLLQPVIFSSSKAKNDK----------------------------------LTNARLADVCISTSAAPTYFPAH 182 (349)
T ss_pred EEeEECCCCCeEEEeCccccCCc----------------------------------ccCcCHHHHHHHhcccccccCCe
Confidence 45679999999999999754321 22678999999999999999999
Q ss_pred cCC---------CceeeeCcccCCChHHHHHHHHHHhC-------C-----CCCCCEEEEECCCCCCCCCC---CCCccc
Q 001385 765 SDD---------VFRWQDGAIVANNPTIFAIREAQLLW-------P-----DTRIDCLVSIGCGSVPTKTR---RGGWRY 820 (1088)
Q Consensus 765 ~~~---------~~~~vDGGl~~NNP~~~Ai~Ea~~~~-------p-----~~~i~~vvSlGTG~~~~~~~---~~~w~~ 820 (1088)
+++ +..|||||+++|||+.+|+.||...+ + +.+..+|||||||..+.... ...|+.
T Consensus 183 ~i~~~~~~g~~~~~~~vDGGv~aNNP~~~A~~ea~~~~~~~~~~~~~~~~~~~~~i~vlSiGTG~~~~~~~~~~~~~wG~ 262 (349)
T cd07214 183 YFTTEDSNGDIREFNLVDGGVAANNPTLLAISEVTKEIIKDNPFFASIKPLDYKKLLVLSLGTGSAEESYKYNAAAKWGL 262 (349)
T ss_pred EeecccCCCCcceEEEecCceecCCHHHHHHHHHHHhhhccCcccccccCCCCCeEEEEEecCCCcccccChhhhccCCe
Confidence 764 24799999999999999999998653 1 12344899999999765432 467998
Q ss_pred cccC-----ccchhc--ccchHHHHHHHHHHcCCC-CCCCEEEEccCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHhcHH
Q 001385 821 LDTG-----QVLIES--ACSVDRAEEALSTLLPML-PEIQYYRFNPVDERCE-MELDETDPAEWLKLEAAVDEYINNNSE 891 (1088)
Q Consensus 821 ~~~~-----~~li~~--~~~~d~~~~~~~~~~~~~-~~~~YfR~np~~~~~~-~~lD~~~~~~~~~l~~~t~~yl~~~~~ 891 (1088)
++|. .+++++ ....+.+++.++++++.. .+.+|+||||...... ..+|++++++++.|...+++|++++..
T Consensus 263 ~~W~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~Y~Ri~~~~~~~~~~~~d~~~~~ni~~L~~~a~~~l~~~~~ 342 (349)
T cd07214 263 ITWLSENGXTPIIDIFSNASSDMVDYHLSVIFQALDSEKNYLRIQDDSLTGTASSVDDATEENLEKLVEIGKKLLKKPVS 342 (349)
T ss_pred eecccccCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecCCCCCcccCcccCCHHHHHHHHHHHHHHHhCccc
Confidence 8887 678884 456688899998887533 3679999999854333 679999999999999999999988765
Q ss_pred H
Q 001385 892 S 892 (1088)
Q Consensus 892 ~ 892 (1088)
.
T Consensus 343 ~ 343 (349)
T cd07214 343 R 343 (349)
T ss_pred c
Confidence 4
No 6
>cd07212 Pat_PNPLA9 Patatin-like phospholipase domain containing protein 9. PNPLA9 is a Ca-independent phospholipase that catalyzes the hydrolysis of glycerophospholipids at the sn-2 position. PNPLA9 is also known as PLA2G6 (phospholipase A2 group VI) or iPLA2beta. PLA2G6 is stimulated by ATP and inhibited by bromoenol lactone (BEL). In humans, PNPLA9 in expressed ubiquitously and is involved in signal transduction, cell proliferation, and apoptotic cell death. Mutations in human PLA2G6 leads to infantile neuroaxonal dystrophy (INAD) and idiopathic neurodegeneration with brain iron accumulation (NBIA). This family includes PLA2G6 from Homo sapiens and Rattus norvegicus.
Probab=100.00 E-value=1.8e-48 Score=433.80 Aligned_cols=285 Identities=30% Similarity=0.525 Sum_probs=218.1
Q ss_pred EEEecCCCchHHHHHHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhcCCCCHHHHHHHHHHhhccccCCCCCCCch
Q 001385 542 ILSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVFAEPFPKDNE 621 (1088)
Q Consensus 542 iLsLdGGG~RG~~~~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~~~~s~~e~~~~y~~~~~~iF~~~~~~~~~ 621 (1088)
||||||||+||+++++||++||+.+|++++++||+|+|||||||||++++. +++++||.++|.++++++|...
T Consensus 1 ILsLDGGG~RGl~~i~vL~~le~~~g~~i~~~fD~i~GTStGgiIA~~la~-g~s~~e~~~~y~~~~~~iF~~~------ 73 (312)
T cd07212 1 LLCLDGGGIRGLVLIQMLIAIEKALGRPIRELFDWIAGTSTGGILALALLH-GKSLREARRLYLRMKDRVFDGS------ 73 (312)
T ss_pred CEEECCcHHHHHHHHHHHHHHHHHhCCCchhhccEEEeeChHHHHHHHHHc-CCCHHHHHHHHHHhhhhhCCCC------
Confidence 799999999999999999999999999999999999999999999999998 6999999999999999999642
Q ss_pred hhhHHHHHHHHhhcccccceeEeccCCCCHHHHHHHHHHHhcCCCCCchhccccCCCCEEEEEEeeeccCCCccEEeecC
Q 001385 622 AATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMPAQPFIFRNY 701 (1088)
Q Consensus 622 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~Lk~~~~~~~g~~~~~~~~~~~~k~~vv~t~~d~~~~~~~lf~ny 701 (1088)
.+|+++.++++|++.|++. ..+.+. ..|+++++++..+..+.++++|+||
T Consensus 74 -------------------------~~y~~~~le~~L~~~~g~~---~~l~d~--~~p~~~v~~~~~~~~~~~~~~f~ny 123 (312)
T cd07212 74 -------------------------RPYNSEPLEEFLKREFGED---TKMTDV--KYPRLMVTGVLADRQPVQLHLFRNY 123 (312)
T ss_pred -------------------------CCCCChHHHHHHHHHHCcC---cccccc--CCCeEEEEeEeccCCCcCceeeecC
Confidence 3588999999999999531 134432 3467777766656567888999999
Q ss_pred CCCCCCCCCCccccCCCCccccCCCCCCCccccccccccCCCcchHHHHHHHhcCCCCCCCCccCCCceeeeCcccCCCh
Q 001385 702 QYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLDDFSDDVFRWQDGAIVANNP 781 (1088)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dA~rASsAaP~yF~p~~~~~~~~vDGGl~~NNP 781 (1088)
+.+....+.... .. ...+...++.++|+|+|||+|||+||+|+ ..|+|||+.+|||
T Consensus 124 ~~~~~~~~~~~~-------------------~~-~~~~~~~~~~~l~~a~rASsAaP~~F~p~----~~~vDGGv~~NnP 179 (312)
T cd07212 124 DPPEDVEEPEKN-------------------AN-FLPPTDPAEQLLWRAARSSGAAPTYFRPM----GRFLDGGLIANNP 179 (312)
T ss_pred CCCCCchhcccc-------------------cc-ccccCCcccccHHHHHHhhcccccccccc----cceecCceeccCh
Confidence 866432110000 00 00122345788999999999999999999 4699999999999
Q ss_pred HHHHHHHHHHhC----------CCCCCCEEEEECCCCCCCCCC--------CCCccccc---cCc----cchhcccchHH
Q 001385 782 TIFAIREAQLLW----------PDTRIDCLVSIGCGSVPTKTR--------RGGWRYLD---TGQ----VLIESACSVDR 836 (1088)
Q Consensus 782 ~~~Ai~Ea~~~~----------p~~~i~~vvSlGTG~~~~~~~--------~~~w~~~~---~~~----~li~~~~~~d~ 836 (1088)
+.+|+.||+.++ +..+++||||||||..+.+.. .+.|++.. +.. .+++.+++++.
T Consensus 180 ~~~a~~Ea~~~~~~~~~~~~~~~~~~i~~vvSiGTG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~t~t~~ 259 (312)
T cd07212 180 TLDAMTEIHEYNKTLKSKGRKNKVKKIGCVVSLGTGIIPQTPVNTVDVFRPSNPWELAKTVFGAKNLGKMVVDQCTASDG 259 (312)
T ss_pred HHHHHHHHHHhcccccccccCCCCCcccEEEEeCCCCCCCcccCCcccccCcchHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 999999998642 455788999999999876421 12233331 222 33445554443
Q ss_pred HHHH-HHHHcCCCCCCCEEEEccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhc
Q 001385 837 AEEA-LSTLLPMLPEIQYYRFNPVDERCEMELDETDPAEWLKLEAAVDEYINNN 889 (1088)
Q Consensus 837 ~~~~-~~~~~~~~~~~~YfR~np~~~~~~~~lD~~~~~~~~~l~~~t~~yl~~~ 889 (1088)
.+.. .+.+... .+.+||||||++. +++.|||++++++.+|+..|+.|+++|
T Consensus 260 ~~~~~~~~~~~~-~~~~Y~Rfn~~l~-~~~~lde~~~~~l~~l~~~~~~yi~~~ 311 (312)
T cd07212 260 APVDRARAWCES-IGIPYFRFSPPLS-KDIMLDETDDEDLVNMLWDTEVYIYTH 311 (312)
T ss_pred hHHHHHHHHHHh-cCCceEEeCCccC-CCcCCCcCCHHHHHHHHHHHHHHHHhc
Confidence 2222 1222222 2789999999986 899999999999999999999999876
No 7
>cd07213 Pat17_PNPLA8_PNPLA9_like1 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=100.00 E-value=1.9e-41 Score=376.61 Aligned_cols=265 Identities=27% Similarity=0.423 Sum_probs=203.5
Q ss_pred CceEEEecCCCchHHHHHHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhcCCCCHHHHHHHHHHhhccccCCCCCC
Q 001385 539 GLRILSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVFAEPFPK 618 (1088)
Q Consensus 539 ~~riLsLdGGG~RG~~~~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~~~~s~~e~~~~y~~~~~~iF~~~~~~ 618 (1088)
++|||||||||+||+++++||++||++ +.++.++||+|+|||||||+|++++.+ ++++++.++|.+....+|......
T Consensus 1 ~~riLsLdGGG~RGi~~~~vL~~Le~~-~~~~~~~fD~i~GTSaGaiia~~la~g-~~~~e~~~~~~~~~~~iF~~~~~~ 78 (288)
T cd07213 1 KYRILSLDGGGVKGIVQLVLLKRLAEE-FPSFLDQIDLFAGTSAGSLIALGLALG-YSPRQVLKLYEEVGLKVFSKSSAG 78 (288)
T ss_pred CeEEEEECCCcHHHHHHHHHHHHHHHh-CcccccceeEEEEeCHHHHHHHHHHcC-cCHHHHHHHHHHhCccccCCCccc
Confidence 479999999999999999999999998 457889999999999999999999875 899999999999999999763211
Q ss_pred CchhhhHHHHHHHHhhcccccceeEeccCCCCHH-HHHHHHHHHhcCCCCCchhccccCCCCEEEEEEeeeccCCCc---
Q 001385 619 DNEAATWREKLDQIYKSSSQSFRVVVHGSKHSAD-QFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMPAQ--- 694 (1088)
Q Consensus 619 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~-~le~~Lk~~~~~~~g~~~~~~~~~~~~k~~vv~t~~d~~~~~--- 694 (1088)
. .+.+.+|... .+++++++++ ++.++.+... ++++ +++++.+++
T Consensus 79 ~-----------------------~~~~~~~~~~~~l~~~l~~~~----~~~~l~d~~~---~~~i--~a~~~~~~~~~~ 126 (288)
T cd07213 79 G-----------------------GAGNNQYFAAGFLKAFAEVFF----GDLTLGDLKR---KVLV--PSFQLDSGKDDP 126 (288)
T ss_pred c-----------------------ccccccCCchHHHHHHHHHHh----CcCCHhhcCC---CEEE--EEEeccCCCCCc
Confidence 1 1123344444 7899999998 4556665543 3333 445777665
Q ss_pred -----cEEeecCCCCCCCCCCCccccCCCCccccCCCCCCCccccccccccCCCcchHHHHHHHhcCCCCCCCCccCCCc
Q 001385 695 -----PFIFRNYQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLDDFSDDVF 769 (1088)
Q Consensus 695 -----~~lf~ny~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dA~rASsAaP~yF~p~~~~~~ 769 (1088)
|++|+||.... ..+.++|||++||||||+||||+ .
T Consensus 127 ~~~~~~~~f~n~~~~~------------------------------------~~~~~l~d~~~ASsAaP~~F~p~----~ 166 (288)
T cd07213 127 NRRWKPKLFHNFPGEP------------------------------------DLDELLVDVCLRSSAAPTYFPSY----Q 166 (288)
T ss_pred cccccceEeecCCCCC------------------------------------CccccHHHHHHHhccccccchhh----h
Confidence 79999876321 12567999999999999999999 5
Q ss_pred eeeeCcccCCChHHHHHHHHHH---hCCCCCCCEEEEECCCCCCCCCC----CCCccccccCccchhcc--cchHHHHHH
Q 001385 770 RWQDGAIVANNPTIFAIREAQL---LWPDTRIDCLVSIGCGSVPTKTR----RGGWRYLDTGQVLIESA--CSVDRAEEA 840 (1088)
Q Consensus 770 ~~vDGGl~~NNP~~~Ai~Ea~~---~~p~~~i~~vvSlGTG~~~~~~~----~~~w~~~~~~~~li~~~--~~~d~~~~~ 840 (1088)
.|+|||+.+|||+..|+.||.. .+++.+..+|||||||..+.... ...|++..|..+++++. ...+.++..
T Consensus 167 ~~iDGGv~~NnP~~~a~~~a~~~~~~~~~~~~i~vlSiGtG~~~~~~~~~~~~~~~G~~~w~~~l~~~~~~~~~~~~~~~ 246 (288)
T cd07213 167 GYVDGGVFANNPSLCAIAQAIGEEGLNIDLKDIVVLSLGTGRPPSYLDGANGYGDWGLLQWLPDLLDLFMDAGVDAADFQ 246 (288)
T ss_pred ceecceeecCChHHHHHHHHHhccccCCCcccEEEEEecCCCCCCCccchhhccccceecccchhHHHHHHHHHHHHHHH
Confidence 7999999999999999999985 34444455999999999865532 46799999998887743 334555555
Q ss_pred HHHHcCCCCCCCEEEEccCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 001385 841 LSTLLPMLPEIQYYRFNPVDERCEMELDETDPAEWLKLEAAVDE 884 (1088)
Q Consensus 841 ~~~~~~~~~~~~YfR~np~~~~~~~~lD~~~~~~~~~l~~~t~~ 884 (1088)
++.++ +++||||||.++ ..+++ .++++++.|.+.+++
T Consensus 247 ~~~~~----~~~y~Ri~~~l~-~~~~~--~~~~~i~~l~~~~~~ 283 (288)
T cd07213 247 CRQLL----GERYFRLDPVLP-ANIDL--DDNKQIEELVEIANT 283 (288)
T ss_pred HHHHc----cCcEEEeCCCCC-cccCc--cCHHHHHHHHHHHHh
Confidence 65543 789999999975 34444 557888888766654
No 8
>cd07199 Pat17_PNPLA8_PNPLA9_like Patatin-like phospholipase; includes PNPLA8, PNPLA9, and Pat17. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=100.00 E-value=4.6e-41 Score=368.86 Aligned_cols=244 Identities=34% Similarity=0.568 Sum_probs=201.8
Q ss_pred EEEecCCCchHHHHHHHHHHHHHhcCCC--CCcccceEEecchHHHHHHHHhcCCCCHHHHHHHHHHhhccccCCCCCCC
Q 001385 542 ILSMDGGGMKGLATVQILKEIEKGTGKR--IHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVFAEPFPKD 619 (1088)
Q Consensus 542 iLsLdGGG~RG~~~~~vL~~Le~~~~~~--i~~~FDli~GTStG~iiA~~l~~~~~s~~e~~~~y~~~~~~iF~~~~~~~ 619 (1088)
||||||||+||++++++|++||+.++.+ ++++||+|+|||||||+|++++.++++++++.++|.+++.++|.
T Consensus 1 iLsldGGG~rG~~~~~~L~~le~~~~~~~~~~~~fd~i~GtS~G~iia~~l~~~~~~~~~~~~~~~~~~~~if~------ 74 (258)
T cd07199 1 ILSLDGGGIRGIIPAEILAELEKRLGKPSRIADLFDLIAGTSTGGIIALGLALGRYSAEELVELYEELGRKIFP------ 74 (258)
T ss_pred CEEECCchHhHHHHHHHHHHHHHHhCCCCchhhccceeeeccHHHHHHHHHhcCCCCHHHHHHHHHHHhHhhcc------
Confidence 7999999999999999999999999987 99999999999999999999998779999999999988776662
Q ss_pred chhhhHHHHHHHHhhcccccceeEeccCCCCHHHHHHHHHHHhcCCCCCchhccccCCCCEEEEEEeeeccCCCccEEee
Q 001385 620 NEAATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMPAQPFIFR 699 (1088)
Q Consensus 620 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~Lk~~~~~~~g~~~~~~~~~~~~k~~vv~t~~d~~~~~~~lf~ 699 (1088)
+ +++++++..+++|++|+
T Consensus 75 ------------------------------------------------------------~--~~i~a~~~~~~~~~~f~ 92 (258)
T cd07199 75 ------------------------------------------------------------R--VLVTAYDLSTGKPVVFS 92 (258)
T ss_pred ------------------------------------------------------------C--eEEEEEEcCCCCeEEEE
Confidence 2 33445688999999999
Q ss_pred cCCCCCCCCCCCccccCCCCccccCCCCCCCccccccccccCCCcchHHHHHHHhcCCCCCCCCccC----CCceeeeCc
Q 001385 700 NYQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLDDFSD----DVFRWQDGA 775 (1088)
Q Consensus 700 ny~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dA~rASsAaP~yF~p~~~----~~~~~vDGG 775 (1088)
||+.+.. ....++++|||+|||||+|+||+|+.+ ++..|+|||
T Consensus 93 ~~~~~~~---------------------------------~~~~~~~l~d~~~ASsAaP~~f~p~~i~~~~~~~~~vDGG 139 (258)
T cd07199 93 NYDAEEP---------------------------------DDDDDFKLWDVARATSAAPTYFPPAVIESGGDEGAFVDGG 139 (258)
T ss_pred CCCCccc---------------------------------CCcCCccHHHHHHHHhcchhccCcEEeccCCCeeEEecCc
Confidence 9985421 012367899999999999999999998 889999999
Q ss_pred ccCCChHHHHHHHHHHhC-CCCCCCEEEEECCCCCCCCCC---CCCccccccCccchh--cccchHHHHHHHHHHcC-CC
Q 001385 776 IVANNPTIFAIREAQLLW-PDTRIDCLVSIGCGSVPTKTR---RGGWRYLDTGQVLIE--SACSVDRAEEALSTLLP-ML 848 (1088)
Q Consensus 776 l~~NNP~~~Ai~Ea~~~~-p~~~i~~vvSlGTG~~~~~~~---~~~w~~~~~~~~li~--~~~~~d~~~~~~~~~~~-~~ 848 (1088)
+.+|||+.+|+.||+..| ++.+..+|||||||..+.... ...|+...|...++. +....+..+.+++.+.+ ..
T Consensus 140 v~~NnP~~~a~~ea~~~~~~~~~~~~vlSiGTG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (258)
T cd07199 140 VAANNPALLALAEALRLLAPDKDDILVLSLGTGTSPSSSSSKKASRWGGLGWGRPLLDILMDAQSDGVDQWLDLLFGSLD 219 (258)
T ss_pred cccCChHHHHHHHHHHhcCCCCCceEEEEecCCCCCCCcCHHHhhccCccccHHHHHHHHHHhhHHHHHHHHHHHhhccc
Confidence 999999999999999954 556677999999999877654 445666777665554 44555666677766543 22
Q ss_pred CCCCEEEEccCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 001385 849 PEIQYYRFNPVDERCEMELDETDPAEWLKLEAAVDEYI 886 (1088)
Q Consensus 849 ~~~~YfR~np~~~~~~~~lD~~~~~~~~~l~~~t~~yl 886 (1088)
.+.+||||||........+|+.+.+++..+...+++|+
T Consensus 220 ~~~~y~R~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~ 257 (258)
T cd07199 220 SKDNYLRINPPLPGPIPALDDASEANLLALDSAAFELI 257 (258)
T ss_pred CCCeEEEEcCCCCCCcccchhCCHHHHHHHHHHHHHHh
Confidence 48899999999875555579999999999998888876
No 9
>cd07217 Pat17_PNPLA8_PNPLA9_like4 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=100.00 E-value=1.3e-39 Score=365.65 Aligned_cols=236 Identities=25% Similarity=0.379 Sum_probs=177.7
Q ss_pred ceEEEecCCCchHHHHHHHHHHHHHhcCC-------CCCcccceEEecchHHHHHHHHhcCCCCHHHHHHHHHHhhcccc
Q 001385 540 LRILSMDGGGMKGLATVQILKEIEKGTGK-------RIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVF 612 (1088)
Q Consensus 540 ~riLsLdGGG~RG~~~~~vL~~Le~~~~~-------~i~~~FDli~GTStG~iiA~~l~~~~~s~~e~~~~y~~~~~~iF 612 (1088)
.|||||||||+||+++++||++||+.+++ +++++||+|+|||||||||++++. +++++|+.++|.+.+.+||
T Consensus 1 ~rILsLDGGGiRGi~~~gvL~~LE~~l~~~~~~p~~~l~d~FDlIaGTStGgIIAa~la~-g~s~~ei~~~y~~~~~~iF 79 (344)
T cd07217 1 KKILALDGGGIRGLLSVEILGRIEKDLRTHLDDPEFRLGDYFDFVGGTSTGSIIAACIAL-GMSVTDLLSFYTLNGVNMF 79 (344)
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHHHhhhccCCccccccccccEEEEecHHHHHHHHHHc-CCCHHHHHHHHHhhhhhhc
Confidence 37999999999999999999999998642 579999999999999999999986 5999999999999999999
Q ss_pred CCCCCCCchhhhHHHHHHHHhhcccccceeEeccCCCCHHHHHHHHHHHhcCCCCCchhccccCCCCEEEEEEeeeccCC
Q 001385 613 AEPFPKDNEAATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMP 692 (1088)
Q Consensus 613 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~Lk~~~~~~~g~~~~~~~~~~~~k~~vv~t~~d~~~ 692 (1088)
.... |... ++ .....++|+.+.|+++|+++|+ +.++.+... .+.+++ +++|+.+
T Consensus 80 ~~~~--------~~~~---l~--------~~~~~~~y~~~~L~~~L~~~fg----~~~l~d~~~-~~~l~i--~a~dl~t 133 (344)
T cd07217 80 DKAW--------LAQR---LF--------LNKLYNQYDPTNLGKKLNTVFP----ETTLGDDTL-RTLLMI--VTRNATT 133 (344)
T ss_pred Cchh--------hhhh---cc--------ccccccccCcHHHHHHHHHHcC----ceeeccccc-CceEEE--EEEecCC
Confidence 7632 1100 00 0011246999999999999994 445544221 133444 4468999
Q ss_pred CccEEeecCCCCCCCCCCCccccCCCCccccCCCCCCCccccccccccCCCcchHHHHHHHhcCCCCCCCCccCC-----
Q 001385 693 AQPFIFRNYQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLDDFSDD----- 767 (1088)
Q Consensus 693 ~~~~lf~ny~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dA~rASsAaP~yF~p~~~~----- 767 (1088)
++|++|+|+...... + . + ......+.++|||+|||||||+||+|+.+.
T Consensus 134 g~p~~f~~~~~~~~~--------~--------------~-~----~~~~~~~~~L~da~rASsAaPt~FpP~~i~~~~~~ 186 (344)
T cd07217 134 GSPWPVCNNPEAKYN--------D--------------S-D----RSDCNLDLPLWQLVRASTAAPTFFPPEVVSIAPGT 186 (344)
T ss_pred CCeeEeecCchhhcc--------c--------------c-c----ccCcccCCcHHHHHHHHccCccccCceEEEecCCc
Confidence 999999987521100 0 0 0 000122578999999999999999997652
Q ss_pred CceeeeCccc-CCChHHHHHHHHHHh-----CCC-CCCCEEEEECCCCCCCCCC---CCCccccccCccchh
Q 001385 768 VFRWQDGAIV-ANNPTIFAIREAQLL-----WPD-TRIDCLVSIGCGSVPTKTR---RGGWRYLDTGQVLIE 829 (1088)
Q Consensus 768 ~~~~vDGGl~-~NNP~~~Ai~Ea~~~-----~p~-~~i~~vvSlGTG~~~~~~~---~~~w~~~~~~~~li~ 829 (1088)
+..|||||++ +|||+.+|+.||... |+. ....+|||||||..+.... ...|+.+.|..++++
T Consensus 187 ~~~lVDGGv~aaNNP~l~A~~ea~~~~~~~~~~~~~~~i~vlSiGTG~~~~~~~~~~~~~~g~~~w~~~l~~ 258 (344)
T cd07217 187 AFVFVDGGVTTYNNPAFQAFLMATAKPYKLNWEVGADNLLLVSVGTGFAPEARPDLKAADMWALDHAKYIPS 258 (344)
T ss_pred eEEEECCccccccCHHHHHHHHHHHhhhcccCCCCCCcEEEEEECCCCCCCCCccccccccChhhhHHHHHH
Confidence 3579999998 699999999999643 652 3344899999999876643 578999999888776
No 10
>COG3621 Patatin [General function prediction only]
Probab=99.98 E-value=1.7e-32 Score=285.80 Aligned_cols=196 Identities=29% Similarity=0.422 Sum_probs=152.2
Q ss_pred CceEEEecCCCchHHHHHHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhcCCCCHHHHHHHHHHhhccccCCCC--
Q 001385 539 GLRILSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVFAEPF-- 616 (1088)
Q Consensus 539 ~~riLsLdGGG~RG~~~~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~~~~s~~e~~~~y~~~~~~iF~~~~-- 616 (1088)
++|||+|||||+||.+++.+|+.||+..|++++++||+|+|||+|||+|++|+.+ .+..|..+.|......+|....
T Consensus 8 k~rIlsldGGGvrG~i~lE~lr~ieqiqGkkl~e~FDl~~GTSiGgilal~La~~-ks~~e~~qlF~~q~~q~f~ee~~~ 86 (394)
T COG3621 8 KYRILSLDGGGVRGAILLEKLRIIEQIQGKKLCEYFDLIGGTSIGGILALGLALG-KSPRELKQLFSAQQAQIFPEEMKH 86 (394)
T ss_pred ceeEEEecCCccccHHHHHHHHHHHHHhCCcceeeEeeecCccHHHHHHHHHhcC-CCCchHHHHHHHhhhhhccHhhcc
Confidence 5899999999999999999999999999999999999999999999999999986 6999999999998888887531
Q ss_pred CCCchhhhHHHHHHHHhhcccccceeEeccCCCCHHHHHHHHHHHhcCCCCCchhccccCCCCEEEEEEeeeccCCCc-c
Q 001385 617 PKDNEAATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMPAQ-P 695 (1088)
Q Consensus 617 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~Lk~~~~~~~g~~~~~~~~~~~~k~~vv~t~~d~~~~~-~ 695 (1088)
...+. .+++ +.++..+.+++|+.++|-++|+.++ +|.++.+...+ |+++.++..+++ |
T Consensus 87 ~~fpv-~tFr-----------q~l~~a~~~pkys~~pLiK~lk~~~----~D~tlkDL~~~-----Vvv~~~~l~~~knp 145 (394)
T COG3621 87 RIFPV-GTFR-----------QLLSYALFSPKYSPQPLIKLLKFVC----KDYTLKDLIGR-----VVVPGYDLNNQKNP 145 (394)
T ss_pred CCCcc-hhHh-----------hhhhhhhcCCcCCchhHHHHHHHhc----cccchhhhccc-----eEEEeeecccccCC
Confidence 11110 1121 1222235689999999999999777 56777765543 455667888887 6
Q ss_pred EEeecCCCCCCCCCCCccccCCCCccccCCCCCCCccccccccccCCCcchHHHHHHHhcCCCCCCCCccCC------Cc
Q 001385 696 FIFRNYQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLDDFSDD------VF 769 (1088)
Q Consensus 696 ~lf~ny~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dA~rASsAaP~yF~p~~~~------~~ 769 (1088)
.+|.+-..+... .+.++++||+|.||+|||+|||||... -.
T Consensus 146 ~~t~~~~~~~~~---------------------------------ry~~~~LsDii~~stAAPtyFp~h~~~~i~~~k~~ 192 (394)
T COG3621 146 LFTFSTHHARPS---------------------------------RYNNYKLSDIILASTAAPTYFPPHHFENITNTKYH 192 (394)
T ss_pred ceeecccCcccc---------------------------------ccccchHHHHHHhcccCCcccCcccccccccccce
Confidence 666554332211 133678999999999999999998753 24
Q ss_pred eeeeCcccCCChHHH---HHHHH
Q 001385 770 RWQDGAIVANNPTIF---AIREA 789 (1088)
Q Consensus 770 ~~vDGGl~~NNP~~~---Ai~Ea 789 (1088)
.+||||++||||+.. |+.++
T Consensus 193 ~~iDGGv~ANnPsla~~~al~~~ 215 (394)
T COG3621 193 PIIDGGVVANNPSLATWQALGLN 215 (394)
T ss_pred eeecceeeecChhHHHHHHhhhh
Confidence 699999999999987 44444
No 11
>cd07225 Pat_PNPLA6_PNPLA7 Patatin-like phospholipase domain containing protein 6 and protein 7. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are 60% identical to each other. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologous to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and pancreatic tissue. NRE
Probab=99.95 E-value=2.6e-26 Score=254.72 Aligned_cols=186 Identities=21% Similarity=0.328 Sum_probs=142.6
Q ss_pred ceEEEecCCCchHHHHHHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhcCCCCHHHHHHHHHHhhccccCCCCCCC
Q 001385 540 LRILSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVFAEPFPKD 619 (1088)
Q Consensus 540 ~riLsLdGGG~RG~~~~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~~~~s~~e~~~~y~~~~~~iF~~~~~~~ 619 (1088)
...|+|+|||+||++|+|||++||+. +..||+|+|||+||++|++++.+ ++.+++.+...+.... +
T Consensus 15 ~~gLvL~GGG~RG~ahiGvL~aLee~-----gi~~d~v~GtSaGAi~ga~ya~g-~~~~~~~~~~~~~~~~-~------- 80 (306)
T cd07225 15 SIALVLGGGGARGCAHIGVIKALEEA-----GIPVDMVGGTSIGAFIGALYAEE-RNISRMKQRAREWAKD-M------- 80 (306)
T ss_pred CEEEEECChHHHHHHHHHHHHHHHHc-----CCCCCEEEEECHHHHHHHHHHcC-CCHHHHHHHHHHHHHH-h-------
Confidence 36899999999999999999999997 33499999999999999999985 8999988877654321 0
Q ss_pred chhhhHHHHHHHHhhcccccceeEeccCCCCHHHHHHHHHHHhcCCCCCchhccccCCCCEEEEEEeeeccCCCccEEee
Q 001385 620 NEAATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMPAQPFIFR 699 (1088)
Q Consensus 620 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~Lk~~~~~~~g~~~~~~~~~~~~k~~vv~t~~d~~~~~~~lf~ 699 (1088)
..|. ..++. +. +...+.|+.+.+++.|++++ ++..+++...+. ++++ +|+.++++++|+
T Consensus 81 ---~~~~---~~~~~-----~~-~~~~~~~~~~~~~~~l~~~~----~~~~~edl~~p~---~~va--tdl~tg~~~~~~ 139 (306)
T cd07225 81 ---TSIW---KKLLD-----LT-YPITSMFSGAAFNRSIHSIF----GDKQIEDLWLPY---FTIT--TDITASAMRVHT 139 (306)
T ss_pred ---HHHH---HHHhc-----cc-ccccccCChHHHHHHHHHHh----CCCCHHHcCCCe---EEEe--eecCCCCEEEec
Confidence 0111 11111 00 12356799999999999999 456677655443 3444 589999999986
Q ss_pred cCCCCCCCCCCCccccCCCCccccCCCCCCCccccccccccCCCcchHHHHHHHhcCCCCCCCCc--cCCCceeeeCccc
Q 001385 700 NYQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLDDF--SDDVFRWQDGAIV 777 (1088)
Q Consensus 700 ny~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dA~rASsAaP~yF~p~--~~~~~~~vDGGl~ 777 (1088)
.. .+|+|+|||||+|++|+|+ .+++..|+|||+.
T Consensus 140 ~g--------------------------------------------~l~~avrAS~siP~~f~Pv~~~~~g~~~vDGGv~ 175 (306)
T cd07225 140 DG--------------------------------------------SLWRYVRASMSLSGYLPPLCDPKDGHLLMDGGYI 175 (306)
T ss_pred CC--------------------------------------------CHHHHHHHHhcCCeeccceEeCCCCeEEEecccc
Confidence 53 2899999999999999999 4799999999999
Q ss_pred CCChHHHHHHHHHHhCCCCCCCEEEEECCCCCC
Q 001385 778 ANNPTIFAIREAQLLWPDTRIDCLVSIGCGSVP 810 (1088)
Q Consensus 778 ~NNP~~~Ai~Ea~~~~p~~~i~~vvSlGTG~~~ 810 (1088)
+|+|+..|+. + + .+..++|++||+...
T Consensus 176 ~n~Pv~~a~~----~-g-~~~ii~V~v~~~~~~ 202 (306)
T cd07225 176 NNLPADVARS----M-G-AKTVIAIDVGSQDET 202 (306)
T ss_pred CcchHHHHHH----C-C-cCEEEEEECCCCccc
Confidence 9999999653 2 2 234478999998654
No 12
>cd07207 Pat_ExoU_VipD_like ExoU and VipD-like proteins; homologus to patatin, cPLA2, and iPLA2. ExoU, a 74-kDa enzyme, is a potent virulence factor of Pseudomonas aeruginosa. One of the pathogenic mechanisms of P. aeruginosa is to induce cytotoxicity by the injection of effector proteins (e.g. ExoU) using the type III secretion (T3S) system. ExoU is homologus to patatin and also has the conserved catalytic residues of mammalian calcium-independent (iPLA2) and cytosolic (cPLA2) PLA2. In vitro, ExoU cytotoxity is blocked by the inhibitor of cytosolic and Ca2-independent phospholipase A2 (cPLA2 and iPLA2) enzymes, suggesting that phospholipase A2 inhibitors may represent a novel mode of treatment for acute P. aeruginosa infections. ExoU requires eukaryotic superoxide dismutase as a cofactor and cleaves phosphatidylcholine and phosphatidylethanolamine in vitro. VipD, a 69-kDa cytosolic protein, belongs to the members of Legionella pneumophila family and is homologus to ExoU from Pseudomona
Probab=99.94 E-value=7.7e-27 Score=245.59 Aligned_cols=179 Identities=24% Similarity=0.334 Sum_probs=134.5
Q ss_pred EEecCCCchHHHHHHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhcCCCCHHHHHHHHHHhhccccCCCCCCCchh
Q 001385 543 LSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVFAEPFPKDNEA 622 (1088)
Q Consensus 543 LsLdGGG~RG~~~~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~~~~s~~e~~~~y~~~~~~iF~~~~~~~~~~ 622 (1088)
|+|+|||+||++++|||++||+. + ..||+|+|||+||++|++++.+ ++.+++.++|..+....|....... .
T Consensus 2 Lvl~GGG~rG~~~~Gvl~~L~e~-~----~~~d~i~GtSaGai~aa~~a~g-~~~~~~~~~~~~~~~~~~~~~~~~~--~ 73 (194)
T cd07207 2 LVFEGGGAKGIAYIGALKALEEA-G----ILKKRVAGTSAGAITAALLALG-YSAADIKDILKETDFAKLLDSPVGL--L 73 (194)
T ss_pred eEEcCchHHHHHHHHHHHHHHHc-C----CCcceEEEECHHHHHHHHHHcC-CCHHHHHHHHHhCCHHHHhccchhh--h
Confidence 89999999999999999999986 3 3479999999999999999875 8999999999988766664321000 0
Q ss_pred hhHHHHHHHHhhcccccceeEeccCCCCHHHHHHHHHHHhcCCCCCc----hhccccC-CCCEEEEEEeeeccCCCccEE
Q 001385 623 ATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDL----LIESSVK-NIPKVFTVSTLVNVMPAQPFI 697 (1088)
Q Consensus 623 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~Lk~~~~~~~g~~----~~~~~~~-~~~k~~vv~t~~d~~~~~~~l 697 (1088)
.. +..+ ...++.|+.+.+++.+++.+.....+. ++.+... ..+++++++ +|+.++++++
T Consensus 74 ~~----~~~~----------~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~I~a--td~~tg~~~~ 137 (194)
T cd07207 74 FL----LPSL----------FKEGGLYKGDALEEWLRELLKEKTGNSFATSLLRDLDDDLGKDLKVVA--TDLTTGALVV 137 (194)
T ss_pred HH----HHHH----------HhhcCCccHHHHHHHHHHHHHhccCCcccchhhhhhccccCCcEEEEE--EECCCCCEEE
Confidence 01 1111 124678999999999999985321110 0112222 334455554 4889999999
Q ss_pred eecCCCCCCCCCCCccccCCCCccccCCCCCCCccccccccccCCCcchHHHHHHHhcCCCCCCCCccCC-CceeeeCcc
Q 001385 698 FRNYQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLDDFSDD-VFRWQDGAI 776 (1088)
Q Consensus 698 f~ny~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dA~rASsAaP~yF~p~~~~-~~~~vDGGl 776 (1088)
|+..+.+ +..+|+|+|||||+|+||+|++++ ++.|+|||+
T Consensus 138 f~~~~~~---------------------------------------~~~l~~av~AS~AiP~~f~pv~i~~g~~~vDGG~ 178 (194)
T cd07207 138 FSAETTP---------------------------------------DMPVAKAVRASMSIPFVFKPVRLAKGDVYVDGGV 178 (194)
T ss_pred ecCCCCC---------------------------------------cccHHHHHHHHcCCCcccccEEeCCCeEEEeCcc
Confidence 8765422 346999999999999999999999 999999999
Q ss_pred cCCChHHH
Q 001385 777 VANNPTIF 784 (1088)
Q Consensus 777 ~~NNP~~~ 784 (1088)
.+|||+..
T Consensus 179 ~~n~Pv~~ 186 (194)
T cd07207 179 LDNYPVWL 186 (194)
T ss_pred ccCCCchh
Confidence 99999974
No 13
>cd07205 Pat_PNPLA6_PNPLA7_NTE1_like Patatin-like phospholipase domain containing protein 6, protein 7, and fungal NTE1. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are included in this family. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologus to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and panc
Probab=99.94 E-value=9.5e-27 Score=240.35 Aligned_cols=163 Identities=27% Similarity=0.331 Sum_probs=131.0
Q ss_pred EEEecCCCchHHHHHHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhcCCCCHHHHHHHHHHhhccccCCCCCCCch
Q 001385 542 ILSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVFAEPFPKDNE 621 (1088)
Q Consensus 542 iLsLdGGG~RG~~~~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~~~~s~~e~~~~y~~~~~~iF~~~~~~~~~ 621 (1088)
.|+|+|||+||++++|||++||++ + ..||+|+|||+||++|++++.+ ++.+++.+.|......++....
T Consensus 2 ~Lvl~GGG~rG~~~~Gvl~~L~~~-~----~~~d~i~GtSaGal~a~~~a~g-~~~~~~~~~~~~~~~~~~~~~~----- 70 (175)
T cd07205 2 GLALSGGGARGLAHIGVLKALEEA-G----IPIDIVSGTSAGAIVGALYAAG-YSPEEIEERAKLRSTDLKALSD----- 70 (175)
T ss_pred eEEEeChhHHHHHHHHHHHHHHHc-C----CCeeEEEEECHHHHHHHHHHcC-CCHHHHHHHHHhhccchhhhhc-----
Confidence 499999999999999999999986 2 3599999999999999999875 8999999999865544332110
Q ss_pred hhhHHHHHHHHhhcccccceeEeccCCCCHHHHHHHHHHHhcCCCCCchhccccCCCCEEEEEEeeeccCCCccEEeecC
Q 001385 622 AATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMPAQPFIFRNY 701 (1088)
Q Consensus 622 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~Lk~~~~~~~g~~~~~~~~~~~~k~~vv~t~~d~~~~~~~lf~ny 701 (1088)
| .....+.|+.+.+++++++.++ +..+++... ++.+++ ++..++++++|++.
T Consensus 71 ---~----------------~~~~~~~~~~~~l~~~l~~~~~----~~~~~~~~~---~l~i~a--~~l~~g~~~~f~~~ 122 (175)
T cd07205 71 ---L----------------TIPTAGLLRGDKFLELLDEYFG----DRDIEDLWI---PFFIVA--TDLTSGKLVVFRSG 122 (175)
T ss_pred ---c----------------ccccccccChHHHHHHHHHHcC----CCcHHHCCC---CEEEEE--EECCCCCEEEEcCC
Confidence 0 0123567899999999999984 455665443 344444 48899999998642
Q ss_pred CCCCCCCCCCccccCCCCccccCCCCCCCccccccccccCCCcchHHHHHHHhcCCCCCCCCccCCCceeeeCcccCCCh
Q 001385 702 QYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLDDFSDDVFRWQDGAIVANNP 781 (1088)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dA~rASsAaP~yF~p~~~~~~~~vDGGl~~NNP 781 (1088)
.+|+|++||||+|+||+|++++++.|+|||+.+|+|
T Consensus 123 --------------------------------------------~l~~av~AS~a~P~~f~pv~~~g~~~~DGG~~~n~P 158 (175)
T cd07205 123 --------------------------------------------SLVRAVRASMSIPGIFPPVKIDGQLLVDGGVLNNLP 158 (175)
T ss_pred --------------------------------------------CHHHHHHHHcccccccCCEEECCEEEEeccCcCCcc
Confidence 289999999999999999999999999999999999
Q ss_pred HHHHHH
Q 001385 782 TIFAIR 787 (1088)
Q Consensus 782 ~~~Ai~ 787 (1088)
+..|+.
T Consensus 159 ~~~a~~ 164 (175)
T cd07205 159 VDVLRE 164 (175)
T ss_pred HHHHHH
Confidence 999754
No 14
>cd07210 Pat_hypo_W_succinogenes_WS1459_like Hypothetical patatin similar to WS1459 of Wolinella succinogenes. Patatin-like phospholipase. This family predominantly consists of bacterial patatin glycoproteins. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=99.93 E-value=1.1e-25 Score=239.22 Aligned_cols=178 Identities=18% Similarity=0.165 Sum_probs=139.6
Q ss_pred EEEecCCCchHHHHHHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhcCCCCHHHHHHHHHHhhccccCCCCCCCch
Q 001385 542 ILSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVFAEPFPKDNE 621 (1088)
Q Consensus 542 iLsLdGGG~RG~~~~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~~~~s~~e~~~~y~~~~~~iF~~~~~~~~~ 621 (1088)
.|+|+|||+||++|+|||++||+. + ..+|+|+|||+|||+|++++.+ ++.+++.+.|.+...+.|
T Consensus 2 ~LvL~GGG~rG~~~~GvL~aL~e~-g----i~~~~i~GtSaGAi~aa~~a~g-~~~~~~~~~~~~~~~~~~--------- 66 (221)
T cd07210 2 ALVLSSGFFGFYAHLGFLAALLEM-G----LEPSAISGTSAGALVGGLFASG-ISPDEMAELLLSLERKDF--------- 66 (221)
T ss_pred eEEEcChHHHHHHHHHHHHHHHHc-C----CCceEEEEeCHHHHHHHHHHcC-CCHHHHHHHHHhcCHHHH---------
Confidence 599999999999999999999886 3 2479999999999999999974 899999998876543222
Q ss_pred hhhHHHHHHHHhhcccccceeEeccCCCCHHHHHHHHHHHhcCCCCCchhccccCCCCEEEEEEeeeccCCCccEEeecC
Q 001385 622 AATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMPAQPFIFRNY 701 (1088)
Q Consensus 622 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~Lk~~~~~~~g~~~~~~~~~~~~k~~vv~t~~d~~~~~~~lf~ny 701 (1088)
|.. ......++.|+.+.+++.+++.++ +..+++... ++++++ +|+.++++++|+++
T Consensus 67 ---~~~------------~~~~~~~g~~~~~~l~~~l~~~l~----~~~~~~~~~---~l~i~a--tdl~tg~~~~f~~~ 122 (221)
T cd07210 67 ---WMF------------WDPPLRGGLLSGDRFAALLREHLP----PDRFEELRI---PLAVSV--VDLTSRETLLLSEG 122 (221)
T ss_pred ---hhh------------ccccCCccccChHHHHHHHHHHcC----CCCHHHCCC---CeEEEE--EECCCCCEEEECCC
Confidence 100 011234677899999999999984 445554432 344444 48899999999764
Q ss_pred CCCCCCCCCCccccCCCCccccCCCCCCCccccccccccCCCcchHHHHHHHhcCCCCCCCCccCCCceeeeCcccCCCh
Q 001385 702 QYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLDDFSDDVFRWQDGAIVANNP 781 (1088)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dA~rASsAaP~yF~p~~~~~~~~vDGGl~~NNP 781 (1088)
+ +++|++||||+|+||+|++++++.|+|||+.+|+|
T Consensus 123 ~--------------------------------------------l~~av~AS~aiP~~f~Pv~i~g~~~vDGGv~~n~P 158 (221)
T cd07210 123 D--------------------------------------------LAEAVAASCAVPPLFQPVEIGGRPFVDGGVADRLP 158 (221)
T ss_pred C--------------------------------------------HHHHHHHHcccccccCCEEECCEEEEecccccccc
Confidence 2 89999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCCEEEEECCCCC
Q 001385 782 TIFAIREAQLLWPDTRIDCLVSIGCGSV 809 (1088)
Q Consensus 782 ~~~Ai~Ea~~~~p~~~i~~vvSlGTG~~ 809 (1088)
+..|+ ++. +..++|+++++..
T Consensus 159 i~~~~------~~~-~~ii~v~~~~~~~ 179 (221)
T cd07210 159 FDALR------PEI-ERILYHHVAPRRP 179 (221)
T ss_pred HHHHh------cCC-CEEEEEECCCCCC
Confidence 99876 222 3336788888765
No 15
>cd07228 Pat_NTE_like_bacteria Bacterial patatin-like phospholipase domain containing protein 6. Bacterial patatin-like phospholipase domain containing protein 6. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This group includes YCHK and rssA from Escherichia coli as well as Ylbk from Bacillus amyloliquefaciens.
Probab=99.93 E-value=4.5e-25 Score=227.40 Aligned_cols=163 Identities=21% Similarity=0.265 Sum_probs=124.1
Q ss_pred EEEecCCCchHHHHHHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhcCCCCHHHHHHHHHHhhccccCCCCCCCch
Q 001385 542 ILSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVFAEPFPKDNE 621 (1088)
Q Consensus 542 iLsLdGGG~RG~~~~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~~~~s~~e~~~~y~~~~~~iF~~~~~~~~~ 621 (1088)
.|+|+|||+||++++|||++||+. + ..||+|+|||+|||+|++++.+ ++.+++........++++.
T Consensus 2 ~LvL~GGG~rG~~~~Gvl~~L~e~-g----~~~d~i~GtSaGAi~aa~~a~g-~~~~~~~~~~~~~~~~~~~-------- 67 (175)
T cd07228 2 GLALGSGGARGWAHIGVLRALEEE-G----IEIDIIAGSSIGALVGALYAAG-HLDALEEWVRSLSQRDVLR-------- 67 (175)
T ss_pred EEEecCcHHHHHHHHHHHHHHHHC-C----CCeeEEEEeCHHHHHHHHHHcC-CCHHHHHHHHhhhHHHHHh--------
Confidence 599999999999999999999886 3 2499999999999999999875 6777765432110111110
Q ss_pred hhhHHHHHHHHhhcccccceeEeccCCCCHHHHHHHHHHHhcCCCCCchhccccCCCCEEEEEEeeeccCCCccEEeecC
Q 001385 622 AATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMPAQPFIFRNY 701 (1088)
Q Consensus 622 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~Lk~~~~~~~g~~~~~~~~~~~~k~~vv~t~~d~~~~~~~lf~ny 701 (1088)
++... ....+.++.+.+++.+++.+. +..+++... ++++++ +|..++++++|++.
T Consensus 68 ----------~~~~~------~~~~~~~~~~~l~~~l~~~~~----~~~~~~~~~---~l~i~a--t~~~tg~~~~f~~~ 122 (175)
T cd07228 68 ----------LLDLS------ASRSGLLKGEKVLEYLREIMG----GVTIEELPI---PFAAVA--TDLQTGKEVWFREG 122 (175)
T ss_pred ----------hcccC------CCcccccCHHHHHHHHHHHcC----CCCHHHCCC---CEEEEE--EECCCCCEEEECCC
Confidence 00000 123567899999999999984 445655433 344544 48899999999753
Q ss_pred CCCCCCCCCCccccCCCCccccCCCCCCCccccccccccCCCcchHHHHHHHhcCCCCCCCCccCCCceeeeCcccCCCh
Q 001385 702 QYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLDDFSDDVFRWQDGAIVANNP 781 (1088)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dA~rASsAaP~yF~p~~~~~~~~vDGGl~~NNP 781 (1088)
. +++|++||||+|++|+|++++++.|+|||+.+|.|
T Consensus 123 ~--------------------------------------------l~~av~AS~a~P~~f~p~~~~g~~~vDGG~~~~~P 158 (175)
T cd07228 123 S--------------------------------------------LIDAIRASISIPGIFAPVEHNGRLLVDGGVVNPIP 158 (175)
T ss_pred C--------------------------------------------HHHHHHHHcccCccccCEEECCEEEEeccCcCCCc
Confidence 2 89999999999999999999999999999999999
Q ss_pred HHHHHH
Q 001385 782 TIFAIR 787 (1088)
Q Consensus 782 ~~~Ai~ 787 (1088)
+..|+.
T Consensus 159 ~~~a~~ 164 (175)
T cd07228 159 VSVARA 164 (175)
T ss_pred HHHHHH
Confidence 988553
No 16
>cd07209 Pat_hypo_Ecoli_Z1214_like Hypothetical patatin similar to Z1214 protein of Escherichia coli. Patatin-like phospholipase similar to Z1214 protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=99.91 E-value=3.7e-24 Score=227.63 Aligned_cols=168 Identities=24% Similarity=0.302 Sum_probs=126.9
Q ss_pred EEecCCCchHHHHHHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhcCCCC--HHHHHHHHHHhhc-cccCCCCCCC
Q 001385 543 LSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMT--LDQCEEIYKNLGK-LVFAEPFPKD 619 (1088)
Q Consensus 543 LsLdGGG~RG~~~~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~~~~s--~~e~~~~y~~~~~-~iF~~~~~~~ 619 (1088)
|+|+|||+||+|++|||++|++. + ..||+|+|||+||++|++++.+ .+ .+++.++|.++.. ++|
T Consensus 1 LvL~GGG~rG~~~~Gvl~aL~e~-g----~~~d~i~GtS~GAl~aa~~a~~-~~~~~~~l~~~~~~~~~~~~~------- 67 (215)
T cd07209 1 LVLSGGGALGAYQAGVLKALAEA-G----IEPDIISGTSIGAINGALIAGG-DPEAVERLEKLWRELSREDVF------- 67 (215)
T ss_pred CEecccHHHHHHHHHHHHHHHHc-C----CCCCEEEEECHHHHHHHHHHcC-CcHHHHHHHHHHHhCChhhHH-------
Confidence 78999999999999999999986 2 2699999999999999999976 56 7888888876542 111
Q ss_pred chhhhHHHHHHHHhhcccccceeEeccCCCCHHHHHHHHHHHhcCCCCCchhccccCCCCEEEEEEeeeccCCCccEEee
Q 001385 620 NEAATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMPAQPFIFR 699 (1088)
Q Consensus 620 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~Lk~~~~~~~g~~~~~~~~~~~~k~~vv~t~~d~~~~~~~lf~ 699 (1088)
+++++++.+ ....+.+.....+++++++ ++..++++++|+
T Consensus 68 ----------------------------------l~~~~~~~~----~~~~~~~~~~~~~~l~i~a--t~~~tg~~~~f~ 107 (215)
T cd07209 68 ----------------------------------LRGLLDRAL----DFDTLRLLAILFAGLVIVA--VNVLTGEPVYFD 107 (215)
T ss_pred ----------------------------------HHHHHHHhC----CHHHHhhccccCceEEEEE--EEcCCCCEEEEe
Confidence 344444443 1222222222223455554 588999999999
Q ss_pred cCCCCCCCCCCCccccCCCCccccCCCCCCCccccccccccCCCcchHHHHHHHhcCCCCCCCCccCCCceeeeCcccCC
Q 001385 700 NYQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLDDFSDDVFRWQDGAIVAN 779 (1088)
Q Consensus 700 ny~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dA~rASsAaP~yF~p~~~~~~~~vDGGl~~N 779 (1088)
+.+. ..+++|++||||+|++|+|++++++.|+|||+.+|
T Consensus 108 ~~~~-----------------------------------------~~~~~av~AS~aiP~~f~pv~i~g~~yvDGGv~~n 146 (215)
T cd07209 108 DIPD-----------------------------------------GILPEHLLASAALPPFFPPVEIDGRYYWDGGVVDN 146 (215)
T ss_pred CCCc-----------------------------------------chHHHHHHHhccccccCCCEEECCeEEEcCccccC
Confidence 8651 34899999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhCCCCCCCEEEEECCCCCC
Q 001385 780 NPTIFAIREAQLLWPDTRIDCLVSIGCGSVP 810 (1088)
Q Consensus 780 NP~~~Ai~Ea~~~~p~~~i~~vvSlGTG~~~ 810 (1088)
+|+..|+.. +.+..+||+++++...
T Consensus 147 ~Pv~~a~~~------g~~~iivv~~~~~~~~ 171 (215)
T cd07209 147 TPLSPAIDL------GADEIIVVSLSDKGRD 171 (215)
T ss_pred cCHHHHHhc------CCCEEEEEECCCcccc
Confidence 999997772 2333368888887654
No 17
>cd07230 Pat_TGL4-5_like Triacylglycerol lipase 4 and 5. TGL4 and TGL5 are triacylglycerol lipases that are involved in triacylglycerol mobilization and degradation; they are found in lipid particles. Tgl4 is a functional ortholog of mammalian adipose TG lipase (ATGL) and is phosphorylated and activated by cyclin-dependent kinase 1 (Cdk1/Cdc28). TGL4 is 30% homologus to TGL3, whereas TGL5 is 26% homologus to TGL3. This family includes TGL4 (STC1) and TGL5 (STC2) from Saccharomyces cerevisiae.
Probab=99.91 E-value=9.4e-24 Score=243.21 Aligned_cols=214 Identities=20% Similarity=0.326 Sum_probs=151.8
Q ss_pred hHHHHHHHHHHhhcchH----HHHHh--hhcCCCCCCCceEEEecCCCchHHHHHHHHHHHHHhcCCCCCcccceEEecc
Q 001385 508 RVNKAAARALAILGENE----SLRRA--IRGRQVPKQGLRILSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTS 581 (1088)
Q Consensus 508 ~v~~~a~~aL~~l~~~~----~~r~~--~~~~~~~~~~~riLsLdGGG~RG~~~~~vL~~Le~~~~~~i~~~FDli~GTS 581 (1088)
++.++++.+|..+.+.+ +.+.+ +=.+....-|..+|+|+|||+||++|+|||++|+++ .-.+|+|+|||
T Consensus 35 ~Yi~ev~~~l~~l~~~~~~~~~~~~kl~ff~~~~~~~GrtALvLsGGG~rG~~hiGVLkaL~E~-----gl~p~vIsGTS 109 (421)
T cd07230 35 RYITEALLTLEYLVDDDEDGLEDRYLLGMLLQTRKNFGRTALLLSGGGTFGMFHIGVLKALFEA-----NLLPRIISGSS 109 (421)
T ss_pred HHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHhcCCEEEEEcCcHHHHHHHHHHHHHHHHc-----CCCCCEEEEEC
Confidence 45566666776665322 11111 111223356789999999999999999999999776 23479999999
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHhhc---cccCCCCCCCchhhhHHHHHHHHhhcccccceeEeccCCCCHHHHHHHH
Q 001385 582 TGGMLAIALAVKLMTLDQCEEIYKNLGK---LVFAEPFPKDNEAATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLL 658 (1088)
Q Consensus 582 tG~iiA~~l~~~~~s~~e~~~~y~~~~~---~iF~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~L 658 (1088)
+||++|++++. .+.+|+.+++..+.. .+|...... ..|...+.+++ ..++.||.+.+++.+
T Consensus 110 aGAivAal~as--~~~eel~~~l~~~~~~~~~~f~~~~~~----~~~~~~~~~l~----------~~g~~~d~~~l~~~l 173 (421)
T cd07230 110 AGSIVAAILCT--HTDEEIPELLEEFPYGDFNVFEDPDQE----ENVLQKLSRFL----------KYGSWFDISHLTRVM 173 (421)
T ss_pred HHHHHHHHHHc--CCHHHHHHHHHhcchHHHHHHhccccc----chHHHHHHHHH----------hcCCCcCHHHHHHHH
Confidence 99999999987 488999998877432 244432110 12223333332 246789999999999
Q ss_pred HHHhcCCCCCchhccccCCCCEEEEEEeeeccCCCccEEeecCCCCCCCCCCCccccCCCCccccCCCCCCCcccccccc
Q 001385 659 KEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMPAQPFIFRNYQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSA 738 (1088)
Q Consensus 659 k~~~~~~~g~~~~~~~~~~~~k~~vv~t~~d~~~~~~~lf~ny~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 738 (1088)
++.+ ++.+|.+++....+.+.++++.......|.++...+.|
T Consensus 174 ~~~l----gd~tF~Eay~rt~r~L~I~vt~~~~~~~p~llny~t~p---------------------------------- 215 (421)
T cd07230 174 RGFL----GDLTFQEAYNRTRRILNITVSPASIYELPRLLNYITAP---------------------------------- 215 (421)
T ss_pred HHHh----CCCCHHHHHHhhCCeEEEEEEeccccCCCeeeeeccCC----------------------------------
Confidence 9998 67888888877776655544333333456665544432
Q ss_pred ccCCCcchHHHHHHHhcCCCCCCCCccC---------------CCceeeeCcccCCChHHHH
Q 001385 739 FIGSCKHQVWQAIRASSAAPYYLDDFSD---------------DVFRWQDGAIVANNPTIFA 785 (1088)
Q Consensus 739 ~~~~~~~~l~dA~rASsAaP~yF~p~~~---------------~~~~~vDGGl~~NNP~~~A 785 (1088)
++.+|+|++||||+|++|+|+++ ++..|+|||+..|.|+..+
T Consensus 216 -----~v~I~~AV~AS~AlP~vf~pv~l~~Kd~~~g~i~p~~~~g~~~vDGgv~~~iPi~~l 272 (421)
T cd07230 216 -----NVLIWSAVCASCSVPGVFPSSPLYEKDPKTGEIVPWNPSSVKWIDGSVDNDLPMTRL 272 (421)
T ss_pred -----CcHHHHHHHHhcCchhhcCCeEEEeecCCCCceecccCCCCceeCCCccccChHHHH
Confidence 56799999999999999999875 2678999999999999883
No 18
>cd07227 Pat_Fungal_NTE1 Fungal patatin-like phospholipase domain containing protein 6. These are fungal Neuropathy Target Esterase (NTE), commonly referred to as NTE1. Patatin-like phospholipase. NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This family includes NTE1 from fungi.
Probab=99.90 E-value=4.7e-23 Score=223.32 Aligned_cols=185 Identities=25% Similarity=0.279 Sum_probs=132.3
Q ss_pred ceEEEecCCCchHHHHHHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhcCCCCHHHHHHHHHHhhccccCCCCCCC
Q 001385 540 LRILSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVFAEPFPKD 619 (1088)
Q Consensus 540 ~riLsLdGGG~RG~~~~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~~~~s~~e~~~~y~~~~~~iF~~~~~~~ 619 (1088)
...|+|+|||+||++|+|||++|||. | ..||+|+|||+||++|++++.+ +++.++.+..+++..+.+
T Consensus 10 ~igLVL~GGGaRG~ahiGVL~aLeE~-g----i~~d~v~GtSaGAiiga~ya~g-~~~~~~~~r~~~~~~~~~------- 76 (269)
T cd07227 10 AIGLVLGGGGARGISHIGILQALEEA-G----IPIDAIGGTSIGSFVGGLYARE-ADLVPIFGRAKKFAGRMA------- 76 (269)
T ss_pred CEEEEECCcHHHHHHHHHHHHHHHHc-C----CCccEEEEECHHHHHHHHHHcC-CchHHHHHHHHHHHHHHh-------
Confidence 36799999999999999999999886 3 3499999999999999999975 788887654443322111
Q ss_pred chhhhHHHHHHHHhhcccccceeEeccCCCCHHHHHHHHHHHhcCCCCCchhccccCCCCEEEEEEeeeccCCCccEEee
Q 001385 620 NEAATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMPAQPFIFR 699 (1088)
Q Consensus 620 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~Lk~~~~~~~g~~~~~~~~~~~~k~~vv~t~~d~~~~~~~lf~ 699 (1088)
..|....+-.+ ...+...+..+.+.+.+.+ ++..+++... ..++++| |+.++++++|+
T Consensus 77 ---~~~~~l~d~~~----------p~~~~~~g~~~~~~l~~~~----~~~~iedl~~---pf~~~aT--dl~tg~~~~~~ 134 (269)
T cd07227 77 ---SMWRFLSDVTY----------PFASYTTGHEFNRGIWKTF----GNTHIEDFWI---PFYANST--NITHSRMEIHS 134 (269)
T ss_pred ---HHHHHHhhccc----------ccccccchhHHHHHHHHHc----CcCCHHHCCC---CEEEEEE--ECCCCCEEEec
Confidence 01221111001 0112234455666677777 3445665533 2345444 89999999987
Q ss_pred cCCCCCCCCCCCccccCCCCccccCCCCCCCccccccccccCCCcchHHHHHHHhcCCCCCCCCccCCCceeeeCcccCC
Q 001385 700 NYQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLDDFSDDVFRWQDGAIVAN 779 (1088)
Q Consensus 700 ny~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dA~rASsAaP~yF~p~~~~~~~~vDGGl~~N 779 (1088)
+.. +|+|+|||||+|++|+|+.+++..|+|||+.+|
T Consensus 135 ~g~--------------------------------------------l~~avrAS~slPg~~pPv~~~G~~~vDGGv~dn 170 (269)
T cd07227 135 SGY--------------------------------------------AWRYIRASMSLAGLLPPLSDNGSMLLDGGYMDN 170 (269)
T ss_pred CCC--------------------------------------------HHHHHHHHccchhcCCCEEECCEEEEcccCCcc
Confidence 532 899999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhCCCCCCCEEEEECCCCC
Q 001385 780 NPTIFAIREAQLLWPDTRIDCLVSIGCGSV 809 (1088)
Q Consensus 780 NP~~~Ai~Ea~~~~p~~~i~~vvSlGTG~~ 809 (1088)
.|+..+ +++. .+..++|.+|++..
T Consensus 171 lPv~~~----~~~G--~~~ii~V~v~~~~~ 194 (269)
T cd07227 171 LPVSPM----RSLG--IRDIFAVDVGSVDD 194 (269)
T ss_pred HhHHHH----HHcC--CCEEEEEECCCcCC
Confidence 999874 3332 34447899987653
No 19
>PRK10279 hypothetical protein; Provisional
Probab=99.90 E-value=2.5e-22 Score=221.48 Aligned_cols=178 Identities=21% Similarity=0.341 Sum_probs=130.5
Q ss_pred ceEEEecCCCchHHHHHHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhcCCCCHHHHHHHHHHhhccccCCCCCCC
Q 001385 540 LRILSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVFAEPFPKD 619 (1088)
Q Consensus 540 ~riLsLdGGG~RG~~~~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~~~~s~~e~~~~y~~~~~~iF~~~~~~~ 619 (1088)
...|+|.|||+||++|+|||++|||. | ..||+|+|||+||++|++++.+ + .+++.+.+.... |
T Consensus 5 ~igLvL~GGGarG~ahiGVL~aL~E~-g----i~~d~i~GtS~GAlvga~yA~g-~-~~~l~~~~~~~~---~------- 67 (300)
T PRK10279 5 KIGLALGSGAARGWSHIGVINALKKV-G----IEIDIVAGCSIGSLVGAAYACD-R-LSALEDWVTSFS---Y------- 67 (300)
T ss_pred cEEEEEcCcHHHHHHHHHHHHHHHHc-C----CCcCEEEEEcHHHHHHHHHHcC-C-hHHHHHHHhccc---h-------
Confidence 35799999999999999999999996 2 3489999999999999999986 3 455555443221 0
Q ss_pred chhhhHHHHHHHHhhcccccceeEeccCCCCHHHHHHHHHHHhcCCCCCchhccccCCCCEEEEEEeeeccCCCccEEee
Q 001385 620 NEAATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMPAQPFIFR 699 (1088)
Q Consensus 620 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~Lk~~~~~~~g~~~~~~~~~~~~k~~vv~t~~d~~~~~~~lf~ 699 (1088)
| ... .++. +. +...+.++.+.+++.+++.+. +..+++... .+.+++ +|+.++++++|+
T Consensus 68 -----~-~~~-~~~d-----~~-~~~~gl~~~~~~~~~l~~~~~----~~~~e~l~~---~~~ivA--tdl~tg~~v~~~ 125 (300)
T PRK10279 68 -----W-DVL-RLMD-----LS-WQRGGLLRGERVFNQYREIMP----ETEIENCSR---RFGAVA--TNLSTGRELWFT 125 (300)
T ss_pred -----h-hhh-hhhc-----cC-CCcCcccCcHHHHHHHHHHcC----hhhHHhCCC---CEEEEE--EECCCCCEEEec
Confidence 0 000 0000 00 112467889999999999883 445554432 234444 499999999997
Q ss_pred cCCCCCCCCCCCccccCCCCccccCCCCCCCccccccccccCCCcchHHHHHHHhcCCCCCCCCccCCCceeeeCcccCC
Q 001385 700 NYQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLDDFSDDVFRWQDGAIVAN 779 (1088)
Q Consensus 700 ny~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dA~rASsAaP~yF~p~~~~~~~~vDGGl~~N 779 (1088)
..+ +++|+|||||+|++|+|++++++.|+|||+.+|
T Consensus 126 ~g~--------------------------------------------l~~avrAS~aiP~vf~Pv~~~g~~~vDGGv~~~ 161 (300)
T PRK10279 126 EGD--------------------------------------------LHLAIRASCSMPGLMAPVAHNGYWLVDGAVVNP 161 (300)
T ss_pred CCC--------------------------------------------HHHHHHHhcccccCCCCEEECCEEEEECccCcc
Confidence 532 889999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhCCCCCCCEEEEECC
Q 001385 780 NPTIFAIREAQLLWPDTRIDCLVSIGC 806 (1088)
Q Consensus 780 NP~~~Ai~Ea~~~~p~~~i~~vvSlGT 806 (1088)
.|+..|. ++. .+..++|.+..
T Consensus 162 ~Pv~~a~----~~G--ad~viaV~v~~ 182 (300)
T PRK10279 162 VPVSLTR----ALG--ADIVIAVDLQH 182 (300)
T ss_pred ccHHHHH----HcC--CCEEEEEECCC
Confidence 9999843 333 33446777765
No 20
>cd07232 Pat_PLPL Patain-like phospholipase. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants and fungi. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have been found also in vertebrates.
Probab=99.89 E-value=1.5e-22 Score=232.27 Aligned_cols=212 Identities=19% Similarity=0.269 Sum_probs=147.9
Q ss_pred hHHHHHHHHHHhhcchH----HHHHhhhcCCCCCCCceEEEecCCCchHHHHHHHHHHHHHhcCCCCCcccceEEecchH
Q 001385 508 RVNKAAARALAILGENE----SLRRAIRGRQVPKQGLRILSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTG 583 (1088)
Q Consensus 508 ~v~~~a~~aL~~l~~~~----~~r~~~~~~~~~~~~~riLsLdGGG~RG~~~~~vL~~Le~~~~~~i~~~FDli~GTStG 583 (1088)
++..+.+.+|..+.+.. +.+..+=.+.....|...|+|+|||+||++|+|||++|+++ ...||+|+|||+|
T Consensus 31 ~yi~ev~~~l~~l~~~~~~~~~~k~~ff~~~~~~~grtALvLsGGG~rG~~h~GVlkaL~e~-----gllp~iI~GtSAG 105 (407)
T cd07232 31 EYIDEVEACLKYLRESSQLDLEEKRRLFKRLSTNYGRTALCLSGGAAFAYYHFGVVKALLDA-----DLLPNVISGTSGG 105 (407)
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCCEEEEECCcHHHHHHHHHHHHHHHhC-----CCCCCEEEEECHH
Confidence 34556666666664432 11111111222345678999999999999999999999987 3458999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHhhccccCCCCCCCchhhhHHHHHHHHhhcccccceeEeccCCCCHHHHHHH-HHHHh
Q 001385 584 GMLAIALAVKLMTLDQCEEIYKNLGKLVFAEPFPKDNEAATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERL-LKEMC 662 (1088)
Q Consensus 584 ~iiA~~l~~~~~s~~e~~~~y~~~~~~iF~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~-Lk~~~ 662 (1088)
|++|++++. .+.+|+.+++.......|.... ..|...+.+++ ..|..+|.+.+++. ++..+
T Consensus 106 Aivaalla~--~t~~el~~~~~~~~~~~~~~~~------~~~~~~~~~~l----------~~G~~~d~~~l~~~~~~~~~ 167 (407)
T cd07232 106 SLVAALLCT--RTDEELKQLLVPELARKITACE------PPWLVWIPRWL----------KTGARFDSVEWARTCCWFTR 167 (407)
T ss_pred HHHHHHHHc--CCHHHHHHHHhhhhhhhhhhcc------chHHHHHHHHH----------hcCCCCCHHHHHHHHHHHhc
Confidence 999999997 3788888887653222221100 01222222222 24678999999998 77887
Q ss_pred cCCCCCchhccccCCCCEEEEEEeeeccCCCccEEeecCCCCCCCCCCCccccCCCCccccCCCCCCCccccccccccCC
Q 001385 663 ADEDGDLLIESSVKNIPKVFTVSTLVNVMPAQPFIFRNYQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGS 742 (1088)
Q Consensus 663 ~~~~g~~~~~~~~~~~~k~~vv~t~~d~~~~~~~lf~ny~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 742 (1088)
++.++++++...++.+.+++ ++...+++..|.||...
T Consensus 168 ----gd~TFeEa~~~tgr~l~I~v-t~~d~~~~~~lln~~ts-------------------------------------- 204 (407)
T cd07232 168 ----GSMTFEEAYERTGRILNISV-VPADPHSPTILLNYLTS-------------------------------------- 204 (407)
T ss_pred ----CCCCHHHHHHhcCCEEEEEE-EECCCCCceEEeccCCC--------------------------------------
Confidence 67788888876666444432 23446667777776421
Q ss_pred CcchHHHHHHHhcCCCCCCCCccC--------------CCceeeeCcccCCChHHHH
Q 001385 743 CKHQVWQAIRASSAAPYYLDDFSD--------------DVFRWQDGAIVANNPTIFA 785 (1088)
Q Consensus 743 ~~~~l~dA~rASsAaP~yF~p~~~--------------~~~~~vDGGl~~NNP~~~A 785 (1088)
.++.+|+|++||||+|++|+|+++ ++..|+|||+.+|.|...+
T Consensus 205 p~v~I~sAV~AS~svPgvf~pv~l~~k~~~g~~~~~~~~g~~~~DGgv~~diP~~~l 261 (407)
T cd07232 205 PNCTIWSAVLASAAVPGILNPVVLMMKDPDGTLIPPFSFGSKWKDGSLRTDIPLKAL 261 (407)
T ss_pred CccHHHHHHhcccCccccccCeEEEeecCCCCcccccCCCCceecCCcCcccHHHHH
Confidence 157799999999999999999876 6678999999999999883
No 21
>cd07208 Pat_hypo_Ecoli_yjju_like Hypothetical patatin similar to yjju protein of Escherichia coli. Patatin-like phospholipase similar to yjju protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins, and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=99.88 E-value=5.2e-22 Score=219.24 Aligned_cols=169 Identities=23% Similarity=0.267 Sum_probs=117.2
Q ss_pred EEecCCCchHHHHHHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhcCCCCHHHHHHHHHHhh-ccccCCCCCCCch
Q 001385 543 LSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLG-KLVFAEPFPKDNE 621 (1088)
Q Consensus 543 LsLdGGG~RG~~~~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~~~~s~~e~~~~y~~~~-~~iF~~~~~~~~~ 621 (1088)
|+|+|||+||++++|||++|++.. +. .||+|+|||+||++|++++.+ .+.++ .+.+.... ...|.
T Consensus 1 Lvl~GGG~rG~~~~Gvl~al~e~~---~~-~fd~i~GtSaGAi~a~~~~~g-~~~~~-~~~~~~~~~~~~~~-------- 66 (266)
T cd07208 1 LVLEGGGMRGAYTAGVLDAFLEAG---IR-PFDLVIGVSAGALNAASYLSG-QRGRA-LRINTKYATDPRYL-------- 66 (266)
T ss_pred CeeccchhhHHHHHHHHHHHHHcC---CC-CCCEEEEECHHHHhHHHHHhC-CcchH-HHHHHHhcCCCCcc--------
Confidence 799999999999999999999872 22 599999999999999999876 34443 33333222 11111
Q ss_pred hhhHHHHHHHHhhcccccceeEeccCCCCHHHHHHHHHHHhcCCCCCchhccccCCCCEEEEEEeeeccCCCccEEeecC
Q 001385 622 AATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMPAQPFIFRNY 701 (1088)
Q Consensus 622 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~Lk~~~~~~~g~~~~~~~~~~~~k~~vv~t~~d~~~~~~~lf~ny 701 (1088)
.|.. ++ ..++.++.+.+.+.+.... ...+...+.+. ..++.+++ +++.++++++|++.
T Consensus 67 --~~~~----~~----------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~l~i~a--t~~~~g~~~~~~~~ 124 (266)
T cd07208 67 --GLRS----LL----------RTGNLFDLDFLYDELPDGL-DPFDFEAFAAS---PARFYVVA--TDADTGEAVYFDKP 124 (266)
T ss_pred --CHHH----Hh----------cCCCeecHHHHHhhccCcc-CCcCHHHHHhC---CCcEEEEE--EECCCCCEEEEeCc
Confidence 1111 11 2345567777766653111 00111122222 22344444 48999999999986
Q ss_pred CCCCCCCCCCccccCCCCccccCCCCCCCccccccccccCCCcchHHHHHHHhcCCCCCCCCccCCCceeeeCcccCCCh
Q 001385 702 QYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLDDFSDDVFRWQDGAIVANNP 781 (1088)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dA~rASsAaP~yF~p~~~~~~~~vDGGl~~NNP 781 (1088)
+. +..+|+|++||||+|++|+|++++++.|+|||+.+|+|
T Consensus 125 ~~----------------------------------------~~~l~~av~AS~aiP~~f~pv~i~g~~yvDGGv~~~~P 164 (266)
T cd07208 125 DI----------------------------------------LDDLLDALRASSALPGLFPPVRIDGEPYVDGGLSDSIP 164 (266)
T ss_pred Cc----------------------------------------chHHHHHHHHHhcchhhcCCEEECCEEEEcCccCcchh
Confidence 52 23599999999999999999999999999999999999
Q ss_pred HHHHHH
Q 001385 782 TIFAIR 787 (1088)
Q Consensus 782 ~~~Ai~ 787 (1088)
+..|+.
T Consensus 165 ~~~a~~ 170 (266)
T cd07208 165 VDKAIE 170 (266)
T ss_pred HHHHHH
Confidence 998654
No 22
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.86 E-value=1e-23 Score=235.67 Aligned_cols=249 Identities=21% Similarity=0.250 Sum_probs=146.9
Q ss_pred hhcCCCCCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCccccccCCCC
Q 001385 119 RVVKRREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPV 198 (1088)
Q Consensus 119 ~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~ 198 (1088)
..+-.+..|+.||||+|++.. .|..+..-+++-+|+||+|+ +..+....|.+|..|-+||||+|++..+|+.+..|.+
T Consensus 97 ~diF~l~dLt~lDLShNqL~E-vP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~ 174 (1255)
T KOG0444|consen 97 TDIFRLKDLTILDLSHNQLRE-VPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSM 174 (1255)
T ss_pred chhcccccceeeecchhhhhh-cchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhh
Confidence 445556677777777777654 66667667777777777776 4555555666777777777777777777777777777
Q ss_pred CcEEEccCCCCC--------------------------CCchhhcCCCCCcEEEccCCcCcccchhccCCCCCCEEEecc
Q 001385 199 LEKLYLDNNKLS--------------------------TLPPELGAMKNLKVLIVDNNMLVCVPVELRECVGLVELSLEH 252 (1088)
Q Consensus 199 L~~L~L~~N~l~--------------------------~lp~~l~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~Ls~ 252 (1088)
|++|+|++|.+. .+|.++..|.+|..+|++.|.+..+|+.+.++.+|+.|+|++
T Consensus 175 LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~ 254 (1255)
T KOG0444|consen 175 LQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSG 254 (1255)
T ss_pred hhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCc
Confidence 777777777553 123333344444455555555555555555555555555555
Q ss_pred CCCCCCcccccCCccccEEEecCCCCCCCc-cccCCCCCCeEEeeCCCCCC---CccccchhhhhcCcCCccccccccch
Q 001385 253 NRLVRPLLDFRAMAELKILRLFGNPLEFLP-EILPLLKLRHLSLANIRIVA---DENLRSVNVQIEMENNSYFGASRHKL 328 (1088)
Q Consensus 253 N~l~~~~~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~L~~N~l~~---~~~l~~l~~~~~l~~l~~l~l~~n~l 328 (1088)
|+|+.+....+...+|++|+||.|+++.+| .+.++++|+.|++.+|+++- +..+.+ |.+|+.+...+|.+
T Consensus 255 N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGK------L~~Levf~aanN~L 328 (1255)
T KOG0444|consen 255 NKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGK------LIQLEVFHAANNKL 328 (1255)
T ss_pred CceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhh------hhhhHHHHhhcccc
Confidence 555444333334444555555555555444 34455555555555555442 222332 44455555555555
Q ss_pred hhhHHhhhcccCCCCcchhHHHhhhhcCCCCcc-ccccccccccccceeeccCChhhh
Q 001385 329 SAFFSLIFRFSSCHHPLLASALAKIMQDQENRV-VVGKDENAVRQLISMISSDNRHVV 385 (1088)
Q Consensus 329 ~~~~~~l~~l~~l~~l~l~~~L~~i~~l~~N~l-~ip~~~~~Lp~L~~L~Ls~N~~v~ 385 (1088)
.-.|..+.++..|+. +.+..|.+ .+|..+.-++.|..|++..|+.+.
T Consensus 329 ElVPEglcRC~kL~k----------L~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 329 ELVPEGLCRCVKLQK----------LKLDHNRLITLPEAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred ccCchhhhhhHHHHH----------hcccccceeechhhhhhcCCcceeeccCCcCcc
Confidence 555555544444333 34666776 888888889999999999988643
No 23
>cd07198 Patatin Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes PNPLA (1-9), TGL (3-5), ExoU-like, and SDP1-like subfamilies. There are some additional hypothetical proteins included in this family.
Probab=99.86 E-value=1.8e-21 Score=200.17 Aligned_cols=158 Identities=27% Similarity=0.392 Sum_probs=112.8
Q ss_pred EEecCCCchHHHHHHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhcCCCCHHHHHHHHHHhhcc---ccCCCCCCC
Q 001385 543 LSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKL---VFAEPFPKD 619 (1088)
Q Consensus 543 LsLdGGG~RG~~~~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~~~~s~~e~~~~y~~~~~~---iF~~~~~~~ 619 (1088)
|+|+|||+||+||+|||++|+|. + ..||+|+|||+||++|++++.+ ++.+++..++.++... .|....
T Consensus 1 Lvl~GGG~rG~~~~Gvl~aL~e~-g----i~~d~v~GtSaGAi~aa~~a~g-~~~~~~~~~~~~~~~~~~~~~~~~~--- 71 (172)
T cd07198 1 LVLSGGGALGIYHVGVAKALRER-G----PLIDIIAGTSAGAIVAALLASG-RDLEEALLLLLRLSREVRLRFDGAF--- 71 (172)
T ss_pred CEECCcHHHHHHHHHHHHHHHHc-C----CCCCEEEEECHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHhccCCc---
Confidence 78999999999999999999987 2 2399999999999999999875 7888888776433221 111100
Q ss_pred chhhhHHHHHHHHhhcccccceeEeccCCCCHHHHHHHHHHHhcCCCCCchhccccCCCCEEEEEEeeeccCCCccEEee
Q 001385 620 NEAATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMPAQPFIFR 699 (1088)
Q Consensus 620 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~Lk~~~~~~~g~~~~~~~~~~~~k~~vv~t~~d~~~~~~~lf~ 699 (1088)
.....+....++..+++.. ...+.+ ...++++++| ++.++++++|.
T Consensus 72 ------------------------~~~~~~~~~~~~~~~~~~~-----~~~~~~---~~~~~~i~at--~l~tg~~~~~~ 117 (172)
T cd07198 72 ------------------------PPTGRLLGILRQPLLSALP-----DDAHED---ASGKLFISLT--RLTDGENVLVS 117 (172)
T ss_pred ------------------------CcccchhHHHHHHHHHhcc-----HhHHHH---CCCCEEEEEE--ECCCCCEEEEe
Confidence 0112222233333333322 111221 2234556555 88999999987
Q ss_pred cCCCCCCCCCCCccccCCCCccccCCCCCCCccccccccccCCCcchHHHHHHHhcCCCCCCCCccC--CCceeeeCccc
Q 001385 700 NYQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLDDFSD--DVFRWQDGAIV 777 (1088)
Q Consensus 700 ny~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dA~rASsAaP~yF~p~~~--~~~~~vDGGl~ 777 (1088)
. + + +..+++|++||||+|++|+|+++ ++..|+|||+.
T Consensus 118 ~-~-~---------------------------------------~~~l~~av~AS~aiP~~f~p~~~~~~g~~~vDGGv~ 156 (172)
T cd07198 118 D-T-S---------------------------------------KGELWSAVRASSSIPGYFGPVPLSFRGRRYGDGGLS 156 (172)
T ss_pred C-C-C---------------------------------------cchHHHHHHHHcchhhhcCceeecCCCeEEEeCCcc
Confidence 5 1 1 23599999999999999999999 99999999999
Q ss_pred CCChHHH
Q 001385 778 ANNPTIF 784 (1088)
Q Consensus 778 ~NNP~~~ 784 (1088)
+|+|+..
T Consensus 157 ~n~Pv~~ 163 (172)
T cd07198 157 NNLPVAE 163 (172)
T ss_pred cCCCCcc
Confidence 9999976
No 24
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.84 E-value=5.4e-23 Score=229.87 Aligned_cols=257 Identities=22% Similarity=0.248 Sum_probs=154.8
Q ss_pred cCCCCCccEEEeeCCCCCC-CCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCccccc-cCCCC
Q 001385 121 VKRREPLRAVVLTKGVGSG-HLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDL-TRLPV 198 (1088)
Q Consensus 121 ~~~l~~L~~L~Ls~n~i~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l-~~l~~ 198 (1088)
++.++.|+.+.+..|++.. -+|..+..+..|..||||+|+ ....|..+..-+++-.|+||+|+|..||..+ -+|..
T Consensus 74 Ls~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNq--L~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtD 151 (1255)
T KOG0444|consen 74 LSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQ--LREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTD 151 (1255)
T ss_pred hccchhhHHHhhhccccccCCCCchhcccccceeeecchhh--hhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHh
Confidence 3444555555555554432 144445555555555555554 2334444444455555555555555555432 25555
Q ss_pred CcEEEccCCCCCCCchhhcCCCCCcEEEccCCcCcccc-hhccCCCCCCEEEeccCCC--CCCcccccCCccccEEEecC
Q 001385 199 LEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVP-VELRECVGLVELSLEHNRL--VRPLLDFRAMAELKILRLFG 275 (1088)
Q Consensus 199 L~~L~L~~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~lp-~~l~~l~~L~~L~Ls~N~l--~~~~~~l~~l~~L~~L~Ls~ 275 (1088)
|-+|||++|++..+|+.+..|..|++|+|++|.+..+- ..+..|++|+.|.+++.+- ..++.++..|.+|..+|||.
T Consensus 152 LLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~ 231 (1255)
T KOG0444|consen 152 LLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE 231 (1255)
T ss_pred HhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccc
Confidence 55555555555555555555555555555555544110 1222344444555544332 23445677778888899999
Q ss_pred CCCCCCc-cccCCCCCCeEEeeCCCCCCCccccchhhhhcCcCCccccccccchhhhHHhhhcccCCCCcc---------
Q 001385 276 NPLEFLP-EILPLLKLRHLSLANIRIVADENLRSVNVQIEMENNSYFGASRHKLSAFFSLIFRFSSCHHPL--------- 345 (1088)
Q Consensus 276 N~l~~l~-~l~~l~~L~~L~L~~N~l~~~~~l~~l~~~~~l~~l~~l~l~~n~l~~~~~~l~~l~~l~~l~--------- 345 (1088)
|.+..+| .+.++.+|+.|+|++|+|+.+..-.. ...+++.|+++.|+++.+|..+..|+.|..+.
T Consensus 232 N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~-----~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~Fe 306 (1255)
T KOG0444|consen 232 NNLPIVPECLYKLRNLRRLNLSGNKITELNMTEG-----EWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFE 306 (1255)
T ss_pred cCCCcchHHHhhhhhhheeccCcCceeeeeccHH-----HHhhhhhhccccchhccchHHHhhhHHHHHHHhccCccccc
Confidence 9998777 57788999999999999987532221 25678889999999999888777766654432
Q ss_pred -hhHHHhhhhcC-----CCCcc-ccccccccccccceeeccCChhh
Q 001385 346 -LASALAKIMQD-----QENRV-VVGKDENAVRQLISMISSDNRHV 384 (1088)
Q Consensus 346 -l~~~L~~i~~l-----~~N~l-~ip~~~~~Lp~L~~L~Ls~N~~v 384 (1088)
+++.+.++..+ .+|.+ -+|..+..++.|++|.|+.|..+
T Consensus 307 GiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLi 352 (1255)
T KOG0444|consen 307 GIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLI 352 (1255)
T ss_pred CCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhccccccee
Confidence 34445554332 35666 67888888889999998888743
No 25
>COG1752 RssA Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]
Probab=99.84 E-value=2.8e-20 Score=209.03 Aligned_cols=188 Identities=23% Similarity=0.263 Sum_probs=138.3
Q ss_pred CceEEEecCCCchHHHHHHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhcCCCCHHHHHHHHHHhhccccCCCCCC
Q 001385 539 GLRILSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVFAEPFPK 618 (1088)
Q Consensus 539 ~~riLsLdGGG~RG~~~~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~~~~s~~e~~~~y~~~~~~iF~~~~~~ 618 (1088)
....|+|.|||+||++|+|||++|++. ...||+|+|||+||++|++++.+ ++.++..+.-..+........
T Consensus 10 ~~i~LvL~GGgArG~~hiGVl~aL~e~-----gi~~~~iaGtS~GAiva~l~A~g-~~~~~~~~~~~~l~~~~~~~~--- 80 (306)
T COG1752 10 LRIGLVLGGGGARGAAHIGVLKALEEA-----GIPIDVIAGTSAGAIVAALYAAG-MDEDELELAAQRLTARWDNAR--- 80 (306)
T ss_pred ceEEEEecCcHHHHHHHHHHHHHHHHc-----CCCccEEEecCHHHHHHHHHHcC-CChhHHHHHHHHHHhhhcccc---
Confidence 347899999999999999999999997 34589999999999999999985 788887766655443322100
Q ss_pred CchhhhHHHHHHHHhhcccccceeEeccCCCCHHHHHHHHHHHhcCCCCCc--hhccccCCCCEEEEEEeeeccCCCccE
Q 001385 619 DNEAATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDL--LIESSVKNIPKVFTVSTLVNVMPAQPF 696 (1088)
Q Consensus 619 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~Lk~~~~~~~g~~--~~~~~~~~~~k~~vv~t~~d~~~~~~~ 696 (1088)
.+....+..+. .....+.+..+.+.+.++++++ +. .+++..+.. ..+++ +|+.+++.+
T Consensus 81 -----~~~~~~d~~~~-------~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~--~~v~a--td~~~g~~~ 140 (306)
T COG1752 81 -----DLLRLLDLTLP-------GGRPLGLLRGEKLRNLLRELLG----DLLFDFEDLPIPL--LYVVA--TDLLTGREV 140 (306)
T ss_pred -----chhhccchhhh-------ccCccceecHHHHHHHHHHHhc----ccccCHHHcCCCc--EEEEe--eEcCCCCEE
Confidence 00000000010 0002467899999999999994 55 666655442 33443 599999999
Q ss_pred EeecCCCCCCCCCCCccccCCCCccccCCCCCCCccccccccccCCCcchHHHHHHHhcCCCCCCCCccCCCceeeeCcc
Q 001385 697 IFRNYQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLDDFSDDVFRWQDGAI 776 (1088)
Q Consensus 697 lf~ny~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dA~rASsAaP~yF~p~~~~~~~~vDGGl 776 (1088)
+|+... +|+|+|||||+|++|+|+.++++.|+|||+
T Consensus 141 ~~~~g~--------------------------------------------~~~av~AS~siP~vF~Pv~i~~~~~vDGg~ 176 (306)
T COG1752 141 VFSEGS--------------------------------------------LAEAVRASCSIPGVFPPVEIDGRLLVDGGV 176 (306)
T ss_pred EecCCc--------------------------------------------HHHHHHHhcccCccCCCEEECCEEEEecCc
Confidence 988532 899999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHhCCCCCCCEEEEEC
Q 001385 777 VANNPTIFAIREAQLLWPDTRIDCLVSIG 805 (1088)
Q Consensus 777 ~~NNP~~~Ai~Ea~~~~p~~~i~~vvSlG 805 (1088)
.+|-|+.. ++.+.. ++.+++.++
T Consensus 177 ~~n~Pv~~----~~~~~~--~~vi~v~v~ 199 (306)
T COG1752 177 LNNVPVSL----LRELGA--DIVIAVDVN 199 (306)
T ss_pred cCCccHHH----HHHcCC--CeEEEEecc
Confidence 99999998 444443 444566666
No 26
>cd07222 Pat_PNPLA4 Patatin-like phospholipase domain containing protein 4. PNPLA4, also known as GS2 (gene sequence-2), shows both lipase and transacylation activities. GS2 lipase is expressed in various tissues, predominantly in muscle and adipocytes tissue. It is also expressed in keratinocytes and shows retinyl ester hydrolase, acylglycerol, TG hydrolase, and PLA2 activity. This family includes patatin-like proteins: GS2 from mammals, PNPLA4 (Patatin-like phospholipase domain-containing protein 4), and iPLA2-eta (Calcium-independent phospholipase A2) from Homo sapiens.
Probab=99.84 E-value=1.8e-20 Score=202.75 Aligned_cols=167 Identities=17% Similarity=0.308 Sum_probs=120.5
Q ss_pred EEecCCCchHHHHHHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhcCCCCHHHHHHHHHHhhccccCCCCCCCchh
Q 001385 543 LSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVFAEPFPKDNEA 622 (1088)
Q Consensus 543 LsLdGGG~RG~~~~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~~~~s~~e~~~~y~~~~~~iF~~~~~~~~~~ 622 (1088)
|+|.|||+||+||+||+++|+|. |.++.+.||.|+|||+||++|++++.....++++.+.+..+.+.+.....
T Consensus 2 L~l~GGG~rG~yhiGVl~~L~e~-g~~l~~~~~~i~GtSaGAl~aa~~a~~~~~~~~~~~~~~~~~~~~~~~~~------ 74 (246)
T cd07222 2 LSFAACGFLGIYHLGAAKALLRH-GKKLLKRVKRFAGASAGSLVAAVLLTAPEKIEECKEFTYKFAEEVRKQRF------ 74 (246)
T ss_pred eeEcccHHHHHHHHHHHHHHHHc-CchhhccCCEEEEECHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhccc------
Confidence 89999999999999999999986 55556679999999999999999985433466666555444433322110
Q ss_pred hhHHHHHHHHhhcccccceeEeccCCCCHHHHHHHHHHHhcCCCCCchhccccCCCCEEEEEEeeeccCCCccEEeecCC
Q 001385 623 ATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMPAQPFIFRNYQ 702 (1088)
Q Consensus 623 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~Lk~~~~~~~g~~~~~~~~~~~~k~~vv~t~~d~~~~~~~lf~ny~ 702 (1088)
. .+..+....+.+++.+++++.. .+.+.. + .++.+++| ++.++++++|+.++
T Consensus 75 -----------~--------~~~~~~~~~~~l~~~l~~~lp~-----~~~~~~-~-~~l~I~aT--dl~tg~~v~~~~f~ 126 (246)
T cd07222 75 -----------G--------AMTPGYDFMARLRKGIESILPT-----DAHELA-N-DRLHVSIT--NLKTRKNYLVSNFT 126 (246)
T ss_pred -----------C--------CCCCcchHHHHHHHHHHHHCCH-----HHHhcC-C-CcEEEEEE--ECCCCCeEEEeccC
Confidence 0 0011222355678888887742 122211 2 34555555 88999999999875
Q ss_pred CCCCCCCCCccccCCCCccccCCCCCCCccccccccccCCCcchHHHHHHHhcCCCCC--CCCccCCCceeeeCcccCCC
Q 001385 703 YPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYY--LDDFSDDVFRWQDGAIVANN 780 (1088)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dA~rASsAaP~y--F~p~~~~~~~~vDGGl~~NN 780 (1088)
.. -.+.+|++||||+|+| |+|++++++.|+|||+.+|.
T Consensus 127 s~----------------------------------------~~L~~av~AS~aiP~~~g~~pv~~~G~~~vDGGv~~~~ 166 (246)
T cd07222 127 SR----------------------------------------EDLIKVLLASCYVPVYAGLKPVEYKGQKWIDGGFTNSL 166 (246)
T ss_pred Cc----------------------------------------chHHHHHHHhhcCccccCCCCeEECCEEEEecCccCCC
Confidence 32 2389999999999998 69999999999999999999
Q ss_pred hHHH
Q 001385 781 PTIF 784 (1088)
Q Consensus 781 P~~~ 784 (1088)
|+..
T Consensus 167 P~~~ 170 (246)
T cd07222 167 PVLP 170 (246)
T ss_pred CCCC
Confidence 9765
No 27
>cd07221 Pat_PNPLA3 Patatin-like phospholipase domain containing protein 3. PNPLA3 is a triacylglycerol lipase that mediates triacylglycerol hydrolysis in adipocytes and is an indicator of the nutritional state. PNPLA3 is also known as adiponutrin (ADPN) or iPLA2-epsilon. Human adiponutrins are bound to the cell membrane of adipocytes and show transacylase, TG hydrolase, and PLA2 activity. This family includes patatin-like proteins: ADPN (adiponutrin) from mammals, PNPLA3 (Patatin-like phospholipase domain-containing protein 3), and iPLA2-epsilon (Calcium-independent phospholipase A2) from Homo sapiens.
Probab=99.83 E-value=4e-20 Score=199.42 Aligned_cols=166 Identities=19% Similarity=0.278 Sum_probs=123.1
Q ss_pred EEecCCCchHHHHHHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhcCCCCHHHHHHHHHHhhccccCCCCCCCchh
Q 001385 543 LSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVFAEPFPKDNEA 622 (1088)
Q Consensus 543 LsLdGGG~RG~~~~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~~~~s~~e~~~~y~~~~~~iF~~~~~~~~~~ 622 (1088)
|+|.|||+||+||+||+++|++. +.++...||.|+|||+||++|++++.+ ++.+++.+.+.++.+..-....
T Consensus 3 Lsl~GGG~rG~yh~GVl~aL~e~-~~~l~~~~~~i~GtSAGAl~aa~~asg-~~~~~~~~~~~~~~~~~~~~~~------ 74 (252)
T cd07221 3 LSFAGCGFLGFYHVGVTRCLSER-APHLLRDARMFFGASAGALHCVTFLSG-LPLDQILQILMDLVRSARSRNI------ 74 (252)
T ss_pred EEEeCcHHHHHHHHHHHHHHHHh-CcchhccCCEEEEEcHHHHHHHHHHhC-CCHHHHHHHHHHHHHhcccccc------
Confidence 89999999999999999999987 545566799999999999999999875 7899999988876542211100
Q ss_pred hhHHHHHHHHhhcccccceeEeccCCCCHHHHHHHHHHHhcCCCCCchhccccCCCCEEEEEEeeeccCCCccEEeecCC
Q 001385 623 ATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMPAQPFIFRNYQ 702 (1088)
Q Consensus 623 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~Lk~~~~~~~g~~~~~~~~~~~~k~~vv~t~~d~~~~~~~lf~ny~ 702 (1088)
. .++........+++.+++.+.. + ..+.. ..+..+++| ++.++++++|++++
T Consensus 75 -g------------------~~~~~~~~~~~l~~~l~~~lp~---~--~~~~~--~~~l~I~~T--~l~tg~~v~~~~f~ 126 (252)
T cd07221 75 -G------------------ILHPSFNLSKHLRDGLQRHLPD---N--VHQLI--SGKMCISLT--RVSDGENVLVSDFH 126 (252)
T ss_pred -c------------------ccCcccCHHHHHHHHHHHHCCc---C--HHHhc--CCCEEEEEE--ECCCCCEEEEecCC
Confidence 0 0111222346677778877642 1 11111 234445554 88999999999875
Q ss_pred CCCCCCCCCccccCCCCccccCCCCCCCccccccccccCCCcchHHHHHHHhcCCCCC--CCCccCCCceeeeCcccCCC
Q 001385 703 YPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYY--LDDFSDDVFRWQDGAIVANN 780 (1088)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dA~rASsAaP~y--F~p~~~~~~~~vDGGl~~NN 780 (1088)
.. ..+++|++||||+|+| |.|+.++++.|+|||+.+|.
T Consensus 127 s~----------------------------------------~~l~~av~AS~siP~~~g~~P~~~~G~~yvDGGv~dnl 166 (252)
T cd07221 127 SK----------------------------------------DEVVDALVCSCFIPFFSGLIPPSFRGVRYVDGGVSDNV 166 (252)
T ss_pred Cc----------------------------------------hHHHHHHHHHccCccccCCCCeEECCEEEEeCCcccCC
Confidence 22 2489999999999999 55778999999999999999
Q ss_pred hHHH
Q 001385 781 PTIF 784 (1088)
Q Consensus 781 P~~~ 784 (1088)
|+..
T Consensus 167 Pv~~ 170 (252)
T cd07221 167 PFFD 170 (252)
T ss_pred CccC
Confidence 9863
No 28
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.83 E-value=1.9e-21 Score=217.23 Aligned_cols=243 Identities=19% Similarity=0.174 Sum_probs=119.0
Q ss_pred CCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCccc-cccCCCCCcEEE
Q 001385 125 EPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPV-DLTRLPVLEKLY 203 (1088)
Q Consensus 125 ~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~ 203 (1088)
.+|+.|+|.+|.|+..-.+.+..++.|+.||||.|. +..+....|..-.++++|+|++|+|+.+.. .|..+.+|.+|.
T Consensus 125 ghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~-is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlk 203 (873)
T KOG4194|consen 125 GHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNL-ISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLK 203 (873)
T ss_pred cceeEEeeeccccccccHHHHHhHhhhhhhhhhhch-hhcccCCCCCCCCCceEEeeccccccccccccccccchheeee
Confidence 345555555555555444555555555555555554 444444444444555555555555554432 344555555555
Q ss_pred ccCCCCCCCch-hhcCCCCCcEEEccCCcCc------------------------ccch-hccCCCCCCEEEeccCCCCC
Q 001385 204 LDNNKLSTLPP-ELGAMKNLKVLIVDNNMLV------------------------CVPV-ELRECVGLVELSLEHNRLVR 257 (1088)
Q Consensus 204 L~~N~l~~lp~-~l~~l~~L~~L~Ls~N~l~------------------------~lp~-~l~~l~~L~~L~Ls~N~l~~ 257 (1088)
|++|+++.+|. .|.+|++|+.|+|..|+|. .+.+ .|..|.++++|+|+.|+++.
T Consensus 204 LsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~ 283 (873)
T KOG4194|consen 204 LSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQA 283 (873)
T ss_pred cccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhh
Confidence 55555555552 3344555555555555554 3332 23344445555555555444
Q ss_pred Ccc-cccCCccccEEEecCCCCC--CCccccCCCCCCeEEeeCCCCCCCccccchhhhhcCcCCccccccccchhhhHH-
Q 001385 258 PLL-DFRAMAELKILRLFGNPLE--FLPEILPLLKLRHLSLANIRIVADENLRSVNVQIEMENNSYFGASRHKLSAFFS- 333 (1088)
Q Consensus 258 ~~~-~l~~l~~L~~L~Ls~N~l~--~l~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~~~~l~~l~~l~l~~n~l~~~~~- 333 (1088)
... .+.+|+.|+.|+|++|.|. .+..+..+++|+.|+|++|.|+.++.-. +..|..|+.|+++.|.++.+-.
T Consensus 284 vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~s----f~~L~~Le~LnLs~Nsi~~l~e~ 359 (873)
T KOG4194|consen 284 VNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGS----FRVLSQLEELNLSHNSIDHLAEG 359 (873)
T ss_pred hhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhH----HHHHHHhhhhcccccchHHHHhh
Confidence 432 3444555555555555554 2334444555555555555555432111 1124444455555555544432
Q ss_pred hhhcccCCCCcchhHHHhhhhcCCCCcc-cc----ccccccccccceeeccCCh
Q 001385 334 LIFRFSSCHHPLLASALAKIMQDQENRV-VV----GKDENAVRQLISMISSDNR 382 (1088)
Q Consensus 334 ~l~~l~~l~~l~l~~~L~~i~~l~~N~l-~i----p~~~~~Lp~L~~L~Ls~N~ 382 (1088)
.+..+++|+. ++++.|.+ .. ...+..|+.|.+|.+.+|+
T Consensus 360 af~~lssL~~----------LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNq 403 (873)
T KOG4194|consen 360 AFVGLSSLHK----------LDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQ 403 (873)
T ss_pred HHHHhhhhhh----------hcCcCCeEEEEEecchhhhccchhhhheeecCce
Confidence 2222333332 35566655 11 1223457777777777776
No 29
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=99.83 E-value=1.6e-19 Score=202.85 Aligned_cols=203 Identities=19% Similarity=0.250 Sum_probs=146.5
Q ss_pred CCCCceEEEecCCCchHHHHHHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhcCCCCHHHHHHHHHHhhcc--ccC
Q 001385 536 PKQGLRILSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKL--VFA 613 (1088)
Q Consensus 536 ~~~~~riLsLdGGG~RG~~~~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~~~~s~~e~~~~y~~~~~~--iF~ 613 (1088)
..-|...|+|+|||++|++|+||+|+|+++ +-.+|+|+|||+|||+|+++|. ++.+|+.+++....-. .|.
T Consensus 79 ~~fGrtAlvlsGGg~~G~~h~Gv~kaL~e~-----gl~p~~i~GtS~Gaivaa~~a~--~~~~e~~~~l~~~~~d~~~~~ 151 (391)
T cd07229 79 QSFGRTALVLQGGSIFGLCHLGVVKALWLR-----GLLPRIITGTATGALIAALVGV--HTDEELLRFLDGDGIDLSAFN 151 (391)
T ss_pred HhcCCEEEEecCcHHHHHHHHHHHHHHHHc-----CCCCceEEEecHHHHHHHHHHc--CCHHHHHHHHhccchhhhhhh
Confidence 455789999999999999999999999986 4457899999999999999998 4889999998753221 221
Q ss_pred CCCCC---CchhhhH----HHHHHHHhhcccccceeEeccCCCCHHHHHHHHHHHhcCCCCCchhccccCCCCEEEEEEe
Q 001385 614 EPFPK---DNEAATW----REKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVST 686 (1088)
Q Consensus 614 ~~~~~---~~~~~~w----~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~Lk~~~~~~~g~~~~~~~~~~~~k~~vv~t 686 (1088)
..... ......| ...+.+++ ..|..+|.+.|++++++.+ |+.+|++++...+|++.|++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~l~r~l----------~~G~l~D~~~l~~~lr~~l----gd~TFeEAy~rTgriLnItv 217 (391)
T cd07229 152 RLRGKKSLGYSGYGWLGTLGRRIQRLL----------REGYFLDVKVLEEFVRANL----GDLTFEEAYARTGRVLNITV 217 (391)
T ss_pred hhccccccccccccccchHHHHHHHHH----------cCCCcccHHHHHHHHHHHc----CCCcHHHHHHhhCCEEEEEE
Confidence 11000 0001112 22222222 2477899999999999998 78999999988888888777
Q ss_pred eeccCCCccEEeecCCCCCCCCCCCccccCCCCccccCCCCCCCccccccccccCCCcchHHHHHHHhcCCCCCCC-Ccc
Q 001385 687 LVNVMPAQPFIFRNYQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLD-DFS 765 (1088)
Q Consensus 687 ~~d~~~~~~~lf~ny~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dA~rASsAaP~yF~-p~~ 765 (1088)
+.....+.|.+++..+.| |+.||.|++||||.|+.|+ |+.
T Consensus 218 ~~~~~~~~p~LLNylTaP---------------------------------------nVlIwsAv~aS~a~p~~~~~~~~ 258 (391)
T cd07229 218 APSAVSGSPNLLNYLTAP---------------------------------------NVLIWSAALASNASSAALYRSVT 258 (391)
T ss_pred ECCCCCCCCeeeecCCCC---------------------------------------CchHHHHHHHHcCCccccCCCce
Confidence 555557788888876654 7899999999999999886 653
Q ss_pred C-----CC-------------ce-eeeCcccCCChHHHHHHHHHHhCCCCCCCEEEEE
Q 001385 766 D-----DV-------------FR-WQDGAIVANNPTIFAIREAQLLWPDTRIDCLVSI 804 (1088)
Q Consensus 766 ~-----~~-------------~~-~vDGGl~~NNP~~~Ai~Ea~~~~p~~~i~~vvSl 804 (1088)
. +| .. +.||.+....|..- ...+|. .+- .|||-
T Consensus 259 L~~Kd~~G~ivp~~~~~~~~~~~~~~dgs~~~DlP~~r----L~elFN-VNh-fIVSQ 310 (391)
T cd07229 259 LLCKDETGSIVPWPPVQVLFFRSWRGANYSERESPLAR----LSELFN-VNH-FIVSQ 310 (391)
T ss_pred EEEECCCCCEeeCCCcccccccccccCCCccccChHHH----HHHHhC-CCc-eEEEc
Confidence 1 11 22 46788888899843 445663 222 47775
No 30
>PF01734 Patatin: Patatin-like phospholipase This Prosite family is a subset of the Pfam family; InterPro: IPR002641 This domain is structurally and functionally related to the animal cytosolic phospholipase A2. This domain is found in the patatin glycoproteins from the total soluble protein in potato tubers []. Patatin is a storage protein but it also has the enzymatic activity of lipid acyl hydrolase, catalysing the cleavage of fatty acids from membrane lipids [].; GO: 0006629 lipid metabolic process; PDB: 3TU3_B 4AKX_B 1OXW_A.
Probab=99.83 E-value=2.6e-21 Score=203.73 Aligned_cols=200 Identities=24% Similarity=0.303 Sum_probs=103.9
Q ss_pred EEecCCCchHHHHHHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhcCCCCHHHHHHHHHHhhccccCCCCCCCchh
Q 001385 543 LSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVFAEPFPKDNEA 622 (1088)
Q Consensus 543 LsLdGGG~RG~~~~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~~~~s~~e~~~~y~~~~~~iF~~~~~~~~~~ 622 (1088)
|+|+|||+||++++|+|++| +.+..+.||+|+|||+||++|++++.+ ++.++..+.+..+....|.....
T Consensus 1 LvlsGGG~rg~~~~G~l~~L----~~~~~~~~d~i~GtS~Gal~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----- 70 (204)
T PF01734_consen 1 LVLSGGGSRGAYQAGVLKAL----GQGLGERFDVISGTSAGALNAALLALG-YDPDESLDQFYDLWRNLFFSSNL----- 70 (204)
T ss_dssp EEE---CCGCCCCHHHHHHH----CCTGCCT-SEEEEECCHHHHHHHHHTC--TCCCCCCHHCCHHHHHHHCCCT-----
T ss_pred CEEcCcHHHHHHHHHHHHHH----hhhhCCCccEEEEcChhhhhHHHHHhC-CCHHHHHHHHHHHHHhhcccccc-----
Confidence 89999999999999999999 445678899999999999999999876 34444333333333222222110
Q ss_pred hhHHHHHHHHhhcccccceeEeccCCCCHHHHHHHHHHHhcCCCCCchhccccCCCCEEEEEEe----eeccCCCccEEe
Q 001385 623 ATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVST----LVNVMPAQPFIF 698 (1088)
Q Consensus 623 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~Lk~~~~~~~g~~~~~~~~~~~~k~~vv~t----~~d~~~~~~~lf 698 (1088)
.+... ..............++.++...+++.+++.+.+ ...+.......+...... ............
T Consensus 71 -~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (204)
T PF01734_consen 71 -MKRRR---PRKAFRRLRGLFGGSGLFDSEPLRDWLRRVLGD----LTLEEFSARLPRAIGAADDFTTRSRSIFQSPSSP 142 (204)
T ss_dssp -H---------HHT-------SSS-SS--HHHHHHHHHHHCC----HCHHHHCTCECCC-EE--------------EEEC
T ss_pred -ccccc---cccccccccccccCccchhHHHHHHHHHHhccc----cCHHHhhhcccccccccccccccccccccccccc
Confidence 00000 000001112233456788999999999999853 333322222211110000 000000000000
Q ss_pred ecCCCCCCCCCCCccccCCCCccccCCCCCCCccccccccccCCCcchHHHHHHHhcCCCCCCCCccCCCceeeeCcccC
Q 001385 699 RNYQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLDDFSDDVFRWQDGAIVA 778 (1088)
Q Consensus 699 ~ny~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dA~rASsAaP~yF~p~~~~~~~~vDGGl~~ 778 (1088)
....... ............+..+|+|++||+|+|++|+|+++++..|+|||+..
T Consensus 143 ~~~~~~~--------------------------~~~~~~~~~~~~~~~l~~a~~AS~a~P~~~~p~~~~g~~~~DGG~~~ 196 (204)
T PF01734_consen 143 FRASSNN--------------------------FNESRSRYDFDPDVPLWDAVRASSAIPGIFPPVKIDGEYYIDGGILD 196 (204)
T ss_dssp CCCECCE--------------------------EECCCCCTTCCCTSBHHHHHHHCCHSTTTSTTEEETS-EEEEGGGCS
T ss_pred ccccccc--------------------------cccccccccCCCcchHHHhhChhccccccCCCEEECCEEEEecceee
Confidence 0000000 00000111223367899999999999999999999999999999999
Q ss_pred CChHHHHH
Q 001385 779 NNPTIFAI 786 (1088)
Q Consensus 779 NNP~~~Ai 786 (1088)
|+|+..|+
T Consensus 197 n~P~~~a~ 204 (204)
T PF01734_consen 197 NNPIEAAL 204 (204)
T ss_dssp ---GGGC-
T ss_pred ccccccCC
Confidence 99998764
No 31
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.82 E-value=3.2e-20 Score=242.86 Aligned_cols=178 Identities=25% Similarity=0.312 Sum_probs=100.9
Q ss_pred CCCCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCC-CccccccCCCCCcE
Q 001385 123 RREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLS-ALPVDLTRLPVLEK 201 (1088)
Q Consensus 123 ~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~ 201 (1088)
.+++|++|+|++|.+++.+|..++++++|++|+|++|. +.+..|..+.++++|++|+|++|.++ .+|..+.++++|++
T Consensus 138 ~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 216 (968)
T PLN00113 138 SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNV-LVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKW 216 (968)
T ss_pred ccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCc-ccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccE
Confidence 35556666666666655555556666666666666665 44445555556666666666666555 45555556666666
Q ss_pred EEccCCCCC-CCchhhcCCCCCcEEEccCCcCc-ccchhccCCCCCCEEEeccCCCCCCc-ccccCCccccEEEecCCCC
Q 001385 202 LYLDNNKLS-TLPPELGAMKNLKVLIVDNNMLV-CVPVELRECVGLVELSLEHNRLVRPL-LDFRAMAELKILRLFGNPL 278 (1088)
Q Consensus 202 L~L~~N~l~-~lp~~l~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~Ls~N~l~~~~-~~l~~l~~L~~L~Ls~N~l 278 (1088)
|+|++|++. .+|..+.++++|++|++++|.++ .+|..++++++|+.|+|++|.+.+.. ..+.++++|+.|+|++|.+
T Consensus 217 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l 296 (968)
T PLN00113 217 IYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL 296 (968)
T ss_pred EECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCee
Confidence 666666555 45555556666666666666555 45555555556666666555555433 2455555555555555555
Q ss_pred C-CCc-cccCCCCCCeEEeeCCCCC
Q 001385 279 E-FLP-EILPLLKLRHLSLANIRIV 301 (1088)
Q Consensus 279 ~-~l~-~l~~l~~L~~L~L~~N~l~ 301 (1088)
. .+| .+..+++|+.|++++|.+.
T Consensus 297 ~~~~p~~~~~l~~L~~L~l~~n~~~ 321 (968)
T PLN00113 297 SGEIPELVIQLQNLEILHLFSNNFT 321 (968)
T ss_pred ccCCChhHcCCCCCcEEECCCCccC
Confidence 4 333 3445555555555555554
No 32
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.82 E-value=3.6e-20 Score=242.34 Aligned_cols=245 Identities=24% Similarity=0.298 Sum_probs=185.4
Q ss_pred hhcCCCCCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCC-CccccccCCC
Q 001385 119 RVVKRREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLS-ALPVDLTRLP 197 (1088)
Q Consensus 119 ~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~ 197 (1088)
..+..+++|++|+|++|++++.+|. +.+++|++|+|++|. +....|..++.+++|++|+|++|.+. .+|..+.+++
T Consensus 112 ~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~-~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 188 (968)
T PLN00113 112 DIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNM-LSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLT 188 (968)
T ss_pred HHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCc-ccccCChHHhcCCCCCEEECccCcccccCChhhhhCc
Confidence 4556888899999999988887774 567889999999988 56677888888999999999999876 7788888899
Q ss_pred CCcEEEccCCCCC-CCchhhcCCCCCcEEEccCCcCc-ccchhccCCCCCCEEEeccCCCCCCcc-cccCCccccEEEec
Q 001385 198 VLEKLYLDNNKLS-TLPPELGAMKNLKVLIVDNNMLV-CVPVELRECVGLVELSLEHNRLVRPLL-DFRAMAELKILRLF 274 (1088)
Q Consensus 198 ~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~Ls~N~l~~~~~-~l~~l~~L~~L~Ls 274 (1088)
+|++|+|++|.+. .+|..+.++++|++|+|++|.++ .+|..++++++|++|++++|.+.+..+ .+.++++|+.|+|+
T Consensus 189 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 268 (968)
T PLN00113 189 SLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLY 268 (968)
T ss_pred CCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECc
Confidence 9999999999887 77888888999999999999887 788888889999999999998876554 68888999999999
Q ss_pred CCCCC-CCc-cccCCCCCCeEEeeCCCCCCC-c-cccchhhhhcCcCCccccccccchhhhH-HhhhcccCCCCcchhHH
Q 001385 275 GNPLE-FLP-EILPLLKLRHLSLANIRIVAD-E-NLRSVNVQIEMENNSYFGASRHKLSAFF-SLIFRFSSCHHPLLASA 349 (1088)
Q Consensus 275 ~N~l~-~l~-~l~~l~~L~~L~L~~N~l~~~-~-~l~~l~~~~~l~~l~~l~l~~n~l~~~~-~~l~~l~~l~~l~l~~~ 349 (1088)
+|.++ .+| .+..+++|++|+|++|.+.+. + .+. .+++|+.|+++.|.+.+.. ..+..+.+++.+
T Consensus 269 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~------~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L----- 337 (968)
T PLN00113 269 QNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVI------QLQNLEILHLFSNNFTGKIPVALTSLPRLQVL----- 337 (968)
T ss_pred CCeeeccCchhHhhccCcCEEECcCCeeccCCChhHc------CCCCCcEEECCCCccCCcCChhHhcCCCCCEE-----
Confidence 98886 444 677888999999999888752 1 122 3667777777777776543 344455555432
Q ss_pred HhhhhcCCCCcc--ccccccccccccceeeccCCh
Q 001385 350 LAKIMQDQENRV--VVGKDENAVRQLISMISSDNR 382 (1088)
Q Consensus 350 L~~i~~l~~N~l--~ip~~~~~Lp~L~~L~Ls~N~ 382 (1088)
++.+|.+ .+|..++.+++|+.|++++|.
T Consensus 338 -----~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~ 367 (968)
T PLN00113 338 -----QLWSNKFSGEIPKNLGKHNNLTVLDLSTNN 367 (968)
T ss_pred -----ECcCCCCcCcCChHHhCCCCCcEEECCCCe
Confidence 2334433 345555555556666655554
No 33
>cd07218 Pat_iPLA2 Calcium-independent phospholipase A2; Classified as Group IVA-1 PLA2. Calcium-independent phospholipase A2; otherwise known as Group IVA-1 PLA2. It contains the lipase consensus sequence (Gly-X-Ser-X-Gly);mutagenesis experiments confirm the role of this serine as a nucleophile. Some members of this group show triacylglycerol lipase activity (EC 3:1:1:3). Members include iPLA-1, iPLA-2, and iPLA-3 from Aedes aegypti and show acylglycerol transacylase/lipase activity. Also includes putative iPLA2-eta from Pediculus humanus corporis which shows patatin-like phospholipase activity.
Probab=99.82 E-value=7.3e-20 Score=196.79 Aligned_cols=161 Identities=20% Similarity=0.252 Sum_probs=119.1
Q ss_pred EEecCCCchHHHHHHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhcCCCCHHHHHHHHHHhhccccCCCCCCCchh
Q 001385 543 LSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVFAEPFPKDNEA 622 (1088)
Q Consensus 543 LsLdGGG~RG~~~~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~~~~s~~e~~~~y~~~~~~iF~~~~~~~~~~ 622 (1088)
|||+|||+||+||+||+++|+|.- +...+|.|+|||+||++|++++.+ .+.+++.+.+.++.+......
T Consensus 3 LsfsGGG~rG~yh~GVl~aL~e~g---~~~~~d~i~GtSAGAl~aa~~a~g-~~~~~~~~~~~~~~~~~~~~~------- 71 (245)
T cd07218 3 LSFAGCGFLGIYHVGVAVCLKKYA---PHLLLNKISGASAGALAACCLLCD-LPLGEMTSDFLRVVREARRHS------- 71 (245)
T ss_pred EEEeCcHHHHHHHHHHHHHHHHhC---cccCCCeEEEEcHHHHHHHHHHhC-CcHHHHHHHHHHHHHHHHHhc-------
Confidence 899999999999999999999872 234479999999999999999885 688898877766654332110
Q ss_pred hhHHHHHHHHhhcccccceeEeccCCCC-HHHHHHHHHHHhcCCCCCchhccccCCCCEEEEEEeeeccCCCccEEeecC
Q 001385 623 ATWREKLDQIYKSSSQSFRVVVHGSKHS-ADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMPAQPFIFRNY 701 (1088)
Q Consensus 623 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~-~~~le~~Lk~~~~~~~g~~~~~~~~~~~~k~~vv~t~~d~~~~~~~lf~ny 701 (1088)
|. . + .+.|+ .+.+++.+++.+.+. .++.. ..++.+++| ++.+++.++|+.+
T Consensus 72 --lg------------~----~-~p~~~l~~~l~~~l~~~lp~d----~~~~~---~~~L~i~~T--~l~~g~~~~~s~f 123 (245)
T cd07218 72 --LG------------P----F-SPSFNIQTCLLEGLQKFLPDD----AHERV---SGRLHISLT--RVSDGKNVIVSEF 123 (245)
T ss_pred --cc------------C----C-ccccCHHHHHHHHHHHHCCcc----hHHhC---CCCEEEEEE--ECCCCCeEEEecC
Confidence 00 0 0 12232 567777888877421 22211 234555555 7889999999987
Q ss_pred CCCCCCCCCCccccCCCCccccCCCCCCCccccccccccCCCcchHHHHHHHhcCCCCC--CCCccCCCceeeeCcccCC
Q 001385 702 QYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYY--LDDFSDDVFRWQDGAIVAN 779 (1088)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dA~rASsAaP~y--F~p~~~~~~~~vDGGl~~N 779 (1088)
+.. -.++||++|||++|+| |.|+.++++.|+|||+.+|
T Consensus 124 ~s~----------------------------------------~dLi~al~AS~~IP~~~g~~P~~~~G~~~vDGGv~dn 163 (245)
T cd07218 124 ESR----------------------------------------EELLQALLCSCFIPVFSGLLPPKFRGVRYMDGGFSDN 163 (245)
T ss_pred CCc----------------------------------------chHHHHHHHhcCCCcccCCCCeEECCEEEEcCcccCC
Confidence 522 2489999999999999 5677888999999999999
Q ss_pred ChH
Q 001385 780 NPT 782 (1088)
Q Consensus 780 NP~ 782 (1088)
.|+
T Consensus 164 lP~ 166 (245)
T cd07218 164 LPT 166 (245)
T ss_pred CCC
Confidence 998
No 34
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.82 E-value=1.5e-21 Score=217.91 Aligned_cols=271 Identities=17% Similarity=0.172 Sum_probs=215.1
Q ss_pred HHhCCCCCCceEEeccCCCCCcccccccccccchhhcCCCCCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCC
Q 001385 85 MVALPVPEDTVVVELAPQEEGDVATDAANVGVEMRVVKRREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNN 164 (1088)
Q Consensus 85 ~~~lp~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 164 (1088)
..++|..+ .++++.+-+. .++...|..-.+++.|+|++|.|+..-...|.++.+|..|.|++|+ ++.
T Consensus 145 L~~l~alr---slDLSrN~is---------~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr-itt 211 (873)
T KOG4194|consen 145 LSALPALR---SLDLSRNLIS---------EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR-ITT 211 (873)
T ss_pred HHhHhhhh---hhhhhhchhh---------cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCc-ccc
Confidence 45556555 6777655442 2455677777889999999999988777889999999999999999 777
Q ss_pred CccccccCCCCccEEEccCCCCCCc-cccccCCCCCcEEEccCCCCCCCch-hhcCCCCCcEEEccCCcCcccch-hccC
Q 001385 165 MGSGFCDHWKTVTAVSLCGLGLSAL-PVDLTRLPVLEKLYLDNNKLSTLPP-ELGAMKNLKVLIVDNNMLVCVPV-ELRE 241 (1088)
Q Consensus 165 ~~~~~~~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~N~l~~lp~-~l~~l~~L~~L~Ls~N~l~~lp~-~l~~ 241 (1088)
..+..|.+|++|+.|+|..|+|..+ --.|.+|++|+.|.|..|.|..+.. .|..|.++++|+|..|+++.+.. ++.+
T Consensus 212 Lp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfg 291 (873)
T KOG4194|consen 212 LPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFG 291 (873)
T ss_pred cCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccc
Confidence 7778888899999999999999866 3468899999999999999997764 57789999999999999997665 5588
Q ss_pred CCCCCEEEeccCCCCCCcc-cccCCccccEEEecCCCCCCCc--cccCCCCCCeEEeeCCCCCCCccccchhhhhcCcCC
Q 001385 242 CVGLVELSLEHNRLVRPLL-DFRAMAELKILRLFGNPLEFLP--EILPLLKLRHLSLANIRIVADENLRSVNVQIEMENN 318 (1088)
Q Consensus 242 l~~L~~L~Ls~N~l~~~~~-~l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~L~~N~l~~~~~l~~l~~~~~l~~l 318 (1088)
|+.|+.|+|++|.|..+.. .+..+++|+.|+|++|+|+.++ .+..+..|++|+|++|.|..+..-. +..+.+|
T Consensus 292 Lt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~a----f~~lssL 367 (873)
T KOG4194|consen 292 LTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGA----FVGLSSL 367 (873)
T ss_pred cchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhH----HHHhhhh
Confidence 9999999999999988764 6778899999999999999666 5778889999999999998753322 3458889
Q ss_pred ccccccccchhhhHH----hhhcccCCCCcchhHHHhhhhcCCCCcc-ccccc-cccccccceeeccCCh
Q 001385 319 SYFGASRHKLSAFFS----LIFRFSSCHHPLLASALAKIMQDQENRV-VVGKD-ENAVRQLISMISSDNR 382 (1088)
Q Consensus 319 ~~l~l~~n~l~~~~~----~l~~l~~l~~l~l~~~L~~i~~l~~N~l-~ip~~-~~~Lp~L~~L~Ls~N~ 382 (1088)
+.||+..|.++.... .+..|.+|+. +.+.+|++ .+++. +..++.|+.|+|.+|+
T Consensus 368 ~~LdLr~N~ls~~IEDaa~~f~gl~~Lrk----------L~l~gNqlk~I~krAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 368 HKLDLRSNELSWCIEDAAVAFNGLPSLRK----------LRLTGNQLKSIPKRAFSGLEALEHLDLGDNA 427 (873)
T ss_pred hhhcCcCCeEEEEEecchhhhccchhhhh----------eeecCceeeecchhhhccCcccceecCCCCc
Confidence 999999999876552 2223444443 34678888 56543 5789999999999997
No 35
>cd07206 Pat_TGL3-4-5_SDP1 Triacylglycerol lipase 3, 4, and 5 and Sugar-Dependent 1 lipase. Triacylglycerol lipases are involved in triacylglycerol mobilization and degradation; they are found in lipid particles. TGL4 is 30% homologus to TGL3, whereas TGL5 is 26% homologus to TGL3. Sugar-Dependent 1 (SDP1) lipase has a patatin-like acyl-hydrolase domain that initiates the breakdown of storage oil in germinating Arabidopsis seeds. This family includes subfamilies of proteins: TGL3, TGL4, TGL5, and SDP1.
Probab=99.82 E-value=9.7e-20 Score=197.27 Aligned_cols=138 Identities=22% Similarity=0.328 Sum_probs=101.3
Q ss_pred CCCceEEEecCCCchHHHHHHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhcCCCCHHHHHHHHHHhhccccCCCC
Q 001385 537 KQGLRILSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVFAEPF 616 (1088)
Q Consensus 537 ~~~~riLsLdGGG~RG~~~~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~~~~s~~e~~~~y~~~~~~iF~~~~ 616 (1088)
.-|...|+|+|||+||++|+||+++|++. ...+|+|+|||+||++|++++.+ +.+|+ +
T Consensus 66 ~~g~~aLvlsGGg~~g~~h~Gvl~aL~e~-----~l~~~~i~GtSaGAi~aa~~~~~--~~~El-----------~---- 123 (298)
T cd07206 66 AFGRTALMLSGGASLGLFHLGVVKALWEQ-----DLLPRVISGSSAGAIVAALLGTH--TDEEL-----------I---- 123 (298)
T ss_pred hcCCEEEEEcCcHHHHHHHHHHHHHHHHc-----CCCCCEEEEEcHHHHHHHHHHcC--CcHHH-----------H----
Confidence 44678999999999999999999999885 23479999999999999999875 33443 1
Q ss_pred CCCchhhhHHHHHHHHhhcccccceeEeccCCCCHHHHHHHHHHHhcCCCCCchhccccCCCCEEEEEEeeeccCCCccE
Q 001385 617 PKDNEAATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMPAQPF 696 (1088)
Q Consensus 617 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~Lk~~~~~~~g~~~~~~~~~~~~k~~vv~t~~d~~~~~~~ 696 (1088)
+++++.+++...++.+.+++ .+...++..
T Consensus 124 --------------------------------------------------gdlTf~EA~~~tgr~lnI~v-t~~~~~~~~ 152 (298)
T cd07206 124 --------------------------------------------------GDLTFQEAYERTGRIINITV-APAEPHQNS 152 (298)
T ss_pred --------------------------------------------------cCCCHHHHHHhcCCEEEEEE-EECCCCCce
Confidence 22223333333344444433 244455554
Q ss_pred EeecCCCCCCCCCCCccccCCCCccccCCCCCCCccccccccccCCCcchHHHHHHHhcCCCCCCCCccC----------
Q 001385 697 IFRNYQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLDDFSD---------- 766 (1088)
Q Consensus 697 lf~ny~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dA~rASsAaP~yF~p~~~---------- 766 (1088)
.|-||... .++.+|+|++||||+|++|+|+++
T Consensus 153 ~lln~~ts--------------------------------------pnv~i~sAv~AS~slP~~f~pv~l~~k~~~g~~~ 194 (298)
T cd07206 153 RLLNALTS--------------------------------------PNVLIWSAVLASCAVPGVFPPVMLMAKNRDGEIV 194 (298)
T ss_pred EEecccCC--------------------------------------CchHHHHHHhhccCccccccCeEEEeecCCCccc
Confidence 55555311 157799999999999999999976
Q ss_pred ---CCceeeeCcccCCChHHHH
Q 001385 767 ---DVFRWQDGAIVANNPTIFA 785 (1088)
Q Consensus 767 ---~~~~~vDGGl~~NNP~~~A 785 (1088)
++..|+|||+..|.|...+
T Consensus 195 p~~~g~~~~DGgv~~~iPv~~l 216 (298)
T cd07206 195 PYLPGRKWVDGSVSDDLPAKRL 216 (298)
T ss_pred cCCCCCcccCCCcCcchHHHHH
Confidence 6789999999999999873
No 36
>cd07219 Pat_PNPLA1 Patatin-like phospholipase domain containing protein 1. Members of this family share a patatin domain, initially discovered in potato tubers. Some members of PNPLA1 subfamily do not have the lipase consensus sequence Gly-X-Ser-X-Gly which is essential for hydrolase activity. This family includes PNPLA1 from Homo sapiens and Gallus gallus. Currently, there is no literature available on the physiological role, structure, or enzymatic activity of PNPLA1. It is expressed in various human tissues in low mRNA levels.
Probab=99.82 E-value=8.7e-20 Score=201.85 Aligned_cols=169 Identities=15% Similarity=0.222 Sum_probs=121.2
Q ss_pred CceEEEecCCCchHHHHHHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhcCCCCHHHHHHHHHHhhccccCCCCCC
Q 001385 539 GLRILSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVFAEPFPK 618 (1088)
Q Consensus 539 ~~riLsLdGGG~RG~~~~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~~~~s~~e~~~~y~~~~~~iF~~~~~~ 618 (1088)
+-.-|+|.|||+||+||+||+++|+|. +.++...||.|+|||+||++|++++.+ ++++++.+++......+ ..
T Consensus 11 ~~~gLvFsGGGfrGiYHvGVl~aL~E~-gp~ll~~~d~IaGtSAGALvAAl~asG-~s~de~~r~~~~~~~~~-r~---- 83 (382)
T cd07219 11 TPHSISFSGSGFLSFYQAGVVDALRDL-APRMLETAHRVAGTSAGSVIAALVVCG-ISMDEYLRVLNVGVAEV-RK---- 83 (382)
T ss_pred CCceEEEcCcHHHHHHHHHHHHHHHhc-CCcccccCCeEEEEcHHHHHHHHHHhC-CCHHHHHHHHHHHHHHH-HH----
Confidence 356799999999999999999999885 555566799999999999999999875 78999988876443322 10
Q ss_pred CchhhhHHHHHHHHhhcccccceeEeccCCC-CHHHHHHHHHHHhcCCCCCchhccccCCCCEEEEEEeeeccCCCccEE
Q 001385 619 DNEAATWREKLDQIYKSSSQSFRVVVHGSKH-SADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMPAQPFI 697 (1088)
Q Consensus 619 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~-~~~~le~~Lk~~~~~~~g~~~~~~~~~~~~k~~vv~t~~d~~~~~~~l 697 (1088)
.+++. + ...+ -.+.+++.|.+.+. +..+.. ...++.+++| ++.+++.++
T Consensus 84 ------------~~lG~--------~-~p~~~l~~~lr~~L~~~LP----~da~e~---~~g~L~IsaT--dl~tGknv~ 133 (382)
T cd07219 84 ------------SFLGP--------L-SPSCKMVQMMRQFLYRVLP----EDSYKV---ATGKLHVSLT--RVTDGENVV 133 (382)
T ss_pred ------------hhccC--------c-cccchHHHHHHHHHHhhCc----HhhHHh---CCCcEEEEEE--ECCCCCEEE
Confidence 00000 0 0111 11445556666553 222221 1234556655 889999999
Q ss_pred eecCCCCCCCCCCCccccCCCCccccCCCCCCCccccccccccCCCcchHHHHHHHhcCCCCCC--CCccCCCceeeeCc
Q 001385 698 FRNYQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYL--DDFSDDVFRWQDGA 775 (1088)
Q Consensus 698 f~ny~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dA~rASsAaP~yF--~p~~~~~~~~vDGG 775 (1088)
|+.++.. ..+.+|++||||+|+|+ .|.+++|..|+|||
T Consensus 134 fS~F~S~----------------------------------------~dLidAV~AScaIP~y~G~~Pp~irG~~yVDGG 173 (382)
T cd07219 134 VSEFTSK----------------------------------------EELIEALYCSCFVPVYCGLIPPTYRGVRYIDGG 173 (382)
T ss_pred EeccCCc----------------------------------------chHHHHHHHHccCccccCCcCeEECCEEEEcCC
Confidence 9987522 24899999999999995 45689999999999
Q ss_pred ccCCChHHH
Q 001385 776 IVANNPTIF 784 (1088)
Q Consensus 776 l~~NNP~~~ 784 (1088)
+.+|.|+..
T Consensus 174 vsdnlPv~~ 182 (382)
T cd07219 174 FTGMQPCSF 182 (382)
T ss_pred ccCCcCccC
Confidence 999999864
No 37
>cd07231 Pat_SDP1-like Sugar-Dependent 1 like lipase. Sugar-Dependent 1 (SDP1) lipase has a patatin-like acyl-hydrolase domain that initiates the breakdown of storage oil in germinating Arabidopsis seeds. This acyl-hydrolase domain is homologus to yeast triacylglycerol lipase 3 and human adipose triglyceride lipase. This family includes SDP1 from Arabidopsis thaliana.
Probab=99.81 E-value=2.8e-19 Score=193.19 Aligned_cols=173 Identities=18% Similarity=0.307 Sum_probs=126.2
Q ss_pred hHHHHHHHHHHhhcchH------HHHHhhhcCCCCCCCceEEEecCCCchHHHHHHHHHHHHHhcCCCCCcccceEEecc
Q 001385 508 RVNKAAARALAILGENE------SLRRAIRGRQVPKQGLRILSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTS 581 (1088)
Q Consensus 508 ~v~~~a~~aL~~l~~~~------~~r~~~~~~~~~~~~~riLsLdGGG~RG~~~~~vL~~Le~~~~~~i~~~FDli~GTS 581 (1088)
++.++.+.+|..+.+.+ +.+..+=.+....-|...|+|.|||+||++|+||+++|++. .-.+|+|+|||
T Consensus 30 ~Yi~ev~~~L~~l~~~~~~~~~~~~kl~ff~~~r~~~G~~aLvlsGGg~~g~~h~GVlkaL~e~-----gl~p~~i~GsS 104 (323)
T cd07231 30 DYIAEVKAQLRAVVESDEDELSLEEKLAFFQETRHAFGRTALLLSGGAALGTFHVGVVRTLVEH-----QLLPRVIAGSS 104 (323)
T ss_pred HHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHhcCCEEEEEcCcHHHHHHHHHHHHHHHHc-----CCCCCEEEEEC
Confidence 46677777777774321 11111111223345678999999999999999999999886 33579999999
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHhhccccCCCCCCCchhhhHHHHHHHHhhcccccceeEeccCCCCHHHHHHHHHHH
Q 001385 582 TGGMLAIALAVKLMTLDQCEEIYKNLGKLVFAEPFPKDNEAATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEM 661 (1088)
Q Consensus 582 tG~iiA~~l~~~~~s~~e~~~~y~~~~~~iF~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~Lk~~ 661 (1088)
+||++|++++. ++.+|+.+++ ++.
T Consensus 105 aGAivaa~~~~--~t~~El~~~~------------------------------------------------------~~~ 128 (323)
T cd07231 105 VGSIVCAIIAT--RTDEELQSFF------------------------------------------------------RAL 128 (323)
T ss_pred HHHHHHHHHHc--CCHHHHHHHH------------------------------------------------------HHH
Confidence 99999999987 3777776655 122
Q ss_pred hcCCCCCchhccccCCCCEEEEEEeeeccCCCccEEeecCCCCCCCCCCCccccCCCCccccCCCCCCCccccccccccC
Q 001385 662 CADEDGDLLIESSVKNIPKVFTVSTLVNVMPAQPFIFRNYQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIG 741 (1088)
Q Consensus 662 ~~~~~g~~~~~~~~~~~~k~~vv~t~~d~~~~~~~lf~ny~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 741 (1088)
+ |+.+|.+++...+|++.++++.......|.+++..+.|
T Consensus 129 ~----gd~TF~Eay~~tgr~lnI~v~~~~~~~~~~lln~~T~P------------------------------------- 167 (323)
T cd07231 129 L----GDLTFQEAYDRTGRILGITVCPPRKSEPPRLLNYLTSP------------------------------------- 167 (323)
T ss_pred c----CcccHHHHHhccCCEEEEEEecccCCCCceeeccCCCC-------------------------------------
Confidence 2 56677777777777766654333344577777766544
Q ss_pred CCcchHHHHHHHhcCCCCCCCCcc------------CC-------CceeeeCcccCCChHHH
Q 001385 742 SCKHQVWQAIRASSAAPYYLDDFS------------DD-------VFRWQDGAIVANNPTIF 784 (1088)
Q Consensus 742 ~~~~~l~dA~rASsAaP~yF~p~~------------~~-------~~~~vDGGl~~NNP~~~ 784 (1088)
++.||.|++||||.|++|+|+. .. ...|+||++..+.|...
T Consensus 168 --nv~I~sAv~aS~a~P~if~~~~L~~Kd~~G~ivp~~~~~~~~~~~~~~DGs~~~dlP~~r 227 (323)
T cd07231 168 --HVVIWSAVAASCAFPGLFEAQELMAKDRFGEIVPYHPPGKVSSPRRWRDGSLEQDLPMQQ 227 (323)
T ss_pred --CcHHHHHHHHHcCChhhccceeEEEECCCCCEeeccCCCccccccccccCcccccCchHH
Confidence 6889999999999999999876 22 35799999999999877
No 38
>cd07204 Pat_PNPLA_like Patatin-like phospholipase domain containing protein family. Members of this family share a patain domain, initially discovered in potato tubers. PNPLA protein members show non-specific hydrolase activity with a variety of substrates such as triacylglycerol, phospholipids, and retinylesters. It contains the lipase consensus sequence (Gly-X-Ser-X-Gly). Nomenclature of PNPLA family could be misleading as some of the mammalian members of this family show hydrolase, but no phospholipase activity.
Probab=99.81 E-value=1.1e-19 Score=196.17 Aligned_cols=165 Identities=16% Similarity=0.232 Sum_probs=117.7
Q ss_pred EEecCCCchHHHHHHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhcCCCCHHHHHHHHHHhhccccCCCCCCCchh
Q 001385 543 LSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVFAEPFPKDNEA 622 (1088)
Q Consensus 543 LsLdGGG~RG~~~~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~~~~s~~e~~~~y~~~~~~iF~~~~~~~~~~ 622 (1088)
|||.|||+||+||+||+++|+|. +.++...+|.|+|||+||++|++++.+ ++.+++.+.+.++........
T Consensus 2 LslsGGG~~G~yh~GVl~~L~e~-g~~l~~~~~~i~GtSAGAl~aa~~a~g-~~~~~~~~~~~~~~~~~~~~~------- 72 (243)
T cd07204 2 LSFSGCGFLGIYHVGVASALREH-APRLLQNARRIAGASAGAIVAAVVLCG-VSMEEACSFILKVVSEARRRS------- 72 (243)
T ss_pred eeEcchHHHHHHHHHHHHHHHHc-CcccccCCCEEEEEcHHHHHHHHHHhC-CCHHHHHHHHHHHHhhhhhhh-------
Confidence 79999999999999999999886 323323357999999999999999885 788998777766554322110
Q ss_pred hhHHHHHHHHhhcccccceeEeccCCCC-HHHHHHHHHHHhcCCCCCchhccccCCCCEEEEEEeeeccCCCccEEeecC
Q 001385 623 ATWREKLDQIYKSSSQSFRVVVHGSKHS-ADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMPAQPFIFRNY 701 (1088)
Q Consensus 623 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~-~~~le~~Lk~~~~~~~g~~~~~~~~~~~~k~~vv~t~~d~~~~~~~lf~ny 701 (1088)
| .. ..+.+. .+.+++.+.+.+.+ ...+.. + .++.+++| ++.++++++|+.+
T Consensus 73 --~-g~----------------~~~~~~~~~~l~~~l~~~lp~----~~~~~~--~-~~l~I~~T--~l~~g~~~~~~~f 124 (243)
T cd07204 73 --L-GP----------------LHPSFNLLKILRQGLEKILPD----DAHELA--S-GRLHISLT--RVSDGENVLVSEF 124 (243)
T ss_pred --c-Cc----------------ccccchHHHHHHHHHHHHCCh----hHHHhc--C-CCEEEEEE--ECCCCCEEEEecC
Confidence 0 00 001111 23456666666632 122211 2 34555555 8899999999987
Q ss_pred CCCCCCCCCCccccCCCCccccCCCCCCCccccccccccCCCcchHHHHHHHhcCCCCC--CCCccCCCceeeeCcccCC
Q 001385 702 QYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYY--LDDFSDDVFRWQDGAIVAN 779 (1088)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dA~rASsAaP~y--F~p~~~~~~~~vDGGl~~N 779 (1088)
+.+ -.+.+|++||||+|+| |.|++++++.|+|||+.+|
T Consensus 125 ~s~----------------------------------------~~Li~Al~AS~~iP~~~g~~P~~~~G~~~vDGGv~~~ 164 (243)
T cd07204 125 DSK----------------------------------------EELIQALVCSCFIPFYCGLIPPKFRGVRYIDGGLSDN 164 (243)
T ss_pred CCc----------------------------------------hHHHHHHHHhccCCcccCCCCeEECCEEEEeCCcccC
Confidence 632 1378999999999999 5789999999999999999
Q ss_pred ChHHH
Q 001385 780 NPTIF 784 (1088)
Q Consensus 780 NP~~~ 784 (1088)
.|+..
T Consensus 165 lP~~~ 169 (243)
T cd07204 165 LPILD 169 (243)
T ss_pred CCCCC
Confidence 99864
No 39
>cd07220 Pat_PNPLA2 Patatin-like phospholipase domain containing protein 2. PNPLA2 plays a key role in hydrolysis of stored triacylglecerols and is also known as adipose triglyceride lipase (ATGL). Members of this family share a patain domain, initially discovered in potato tubers. ATGL is expressed in white and brown adipose tissue in high mRNA levels. Mutations in PNPLA2 encoding adipose triglyceride lipase (ATGL) leads to neutral lipid storage disease (NLSD) which is characterized by the accumulation of triglycerides in multiple tissues. ATGL mutations are also commonly associated with severe forms of skeletal- and cardio-myopathy. This family includes patatin-like proteins: TTS-2.2 (transport-secretion protein 2.2), PNPLA2 (Patatin-like phospholipase domain-containing protein 2), and iPLA2-zeta (Calcium-independent phospholipase A2) from Homo sapiens.
Probab=99.79 E-value=5.7e-19 Score=189.64 Aligned_cols=166 Identities=17% Similarity=0.161 Sum_probs=116.5
Q ss_pred EEEecCCCchHHHHHHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhcCCCCHHHHHHHHHHhhccccCCCCCCCch
Q 001385 542 ILSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVFAEPFPKDNE 621 (1088)
Q Consensus 542 iLsLdGGG~RG~~~~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~~~~s~~e~~~~y~~~~~~iF~~~~~~~~~ 621 (1088)
=|+|+|||+||+||+||+++|+|. +.++.+.||.|+|||+||++|+.++.+ .+.+++.+.+.++.+..= ++
T Consensus 6 ~LsfsGGG~rG~yh~GVl~~L~e~-g~~l~~~~~~i~G~SAGAl~aa~~a~g-~~~~~~~~~~~~~a~~~r-~~------ 76 (249)
T cd07220 6 NISFAGCGFLGVYHVGVASCLLEH-APFLVANARKIYGASAGALTATALVTG-VCLGECGASVIRVAKEAR-KR------ 76 (249)
T ss_pred eEEEeChHHHHHHHHHHHHHHHhc-CCcccccCCeEEEEcHHHHHHHHHHcC-CCHHHHHHHHHHHHHHhh-Hh------
Confidence 389999999999999999999987 445556689999999999999999875 688887776665543210 00
Q ss_pred hhhHHHHHHHHhhcccccceeEeccCCC-CHHHHHHHHHHHhcCCCCCchhccccCCCCEEEEEEeeeccCCCccEEeec
Q 001385 622 AATWREKLDQIYKSSSQSFRVVVHGSKH-SADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMPAQPFIFRN 700 (1088)
Q Consensus 622 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~-~~~~le~~Lk~~~~~~~g~~~~~~~~~~~~k~~vv~t~~d~~~~~~~lf~n 700 (1088)
|.+. ..+.+ -.+.+++.+.+.+.+ ..++. ...++.+++| ++.+++.++|++
T Consensus 77 ---~~g~----------------~~~~~~l~~~l~~~l~~~lp~----~a~~~---~~~~l~is~T--~~~tg~~~~~s~ 128 (249)
T cd07220 77 ---FLGP----------------LHPSFNLVKILRDGLLRTLPE----NAHEL---ASGRLGISLT--RVSDGENVLVSD 128 (249)
T ss_pred ---hccC----------------ccccchHHHHHHHHHHHHCCh----hhHHH---CCCcEEEEEE--ECCCCCEEEEec
Confidence 0000 00001 012355555555421 11121 1235556655 788999999998
Q ss_pred CCCCCCCCCCCccccCCCCccccCCCCCCCccccccccccCCCcchHHHHHHHhcCCCCCC--CCccCCCceeeeCcccC
Q 001385 701 YQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYL--DDFSDDVFRWQDGAIVA 778 (1088)
Q Consensus 701 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dA~rASsAaP~yF--~p~~~~~~~~vDGGl~~ 778 (1088)
+... -.+.+|++|||++|.|+ .|..+++..|+|||+.+
T Consensus 129 f~s~----------------------------------------~dLi~al~AScsiP~~~g~~P~~~~G~~yvDGGvsd 168 (249)
T cd07220 129 FNSK----------------------------------------EELIQALVCSCFIPVYCGLIPPTLRGVRYVDGGISD 168 (249)
T ss_pred CCCc----------------------------------------chHHHHHHHhccCccccCCCCeeECCEEEEcCCccc
Confidence 7632 23899999999999886 35568999999999999
Q ss_pred CChHHH
Q 001385 779 NNPTIF 784 (1088)
Q Consensus 779 NNP~~~ 784 (1088)
|.|+..
T Consensus 169 nlPv~~ 174 (249)
T cd07220 169 NLPQYE 174 (249)
T ss_pred CCCCCC
Confidence 999764
No 40
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.78 E-value=1e-21 Score=210.94 Aligned_cols=246 Identities=20% Similarity=0.185 Sum_probs=209.0
Q ss_pred hhcCCCCCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCccccccCCCC
Q 001385 119 RVVKRREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPV 198 (1088)
Q Consensus 119 ~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~ 198 (1088)
+.+.++..|.+|++.+|+++. +|.+++.+..++.|+.++|+ ...+|..+..+.+|+.|+.++|.+.++|++++.+..
T Consensus 62 ~dl~nL~~l~vl~~~~n~l~~-lp~aig~l~~l~~l~vs~n~--ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~ 138 (565)
T KOG0472|consen 62 EDLKNLACLTVLNVHDNKLSQ-LPAAIGELEALKSLNVSHNK--LSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLD 138 (565)
T ss_pred HhhhcccceeEEEeccchhhh-CCHHHHHHHHHHHhhcccch--HhhccHHHhhhhhhhhhhccccceeecCchHHHHhh
Confidence 567788888999999998865 77788889999999999997 455777778888999999999999999999999999
Q ss_pred CcEEEccCCCCCCCchhhcCCCCCcEEEccCCcCcccchhccCCCCCCEEEeccCCCCCCcccccCCccccEEEecCCCC
Q 001385 199 LEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVELRECVGLVELSLEHNRLVRPLLDFRAMAELKILRLFGNPL 278 (1088)
Q Consensus 199 L~~L~L~~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~~~~~l~~l~~L~~L~Ls~N~l 278 (1088)
|+.|+..+|+++++|+.+..+.+|..|++.+|+++.+|...-+++.|++||...|.+..+|++++.+.+|..|+|..|.|
T Consensus 139 l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki 218 (565)
T KOG0472|consen 139 LEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKI 218 (565)
T ss_pred hhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhccc
Confidence 99999999999999999999999999999999999888877778999999999999988888999999999999999999
Q ss_pred CCCccccCCCCCCeEEeeCCCCCCCccccchhhhhcCcCCccccccccchhhhHHhhhcccCCCCcchhHHHhhhhcCCC
Q 001385 279 EFLPEILPLLKLRHLSLANIRIVADENLRSVNVQIEMENNSYFGASRHKLSAFFSLIFRFSSCHHPLLASALAKIMQDQE 358 (1088)
Q Consensus 279 ~~l~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~~~~l~~l~~l~l~~n~l~~~~~~l~~l~~l~~l~l~~~L~~i~~l~~ 358 (1088)
.++|+|..|..|..|+++.|.|..++.-. ..+++.+..+|+..|++...|..+.-+.++.. +++++
T Consensus 219 ~~lPef~gcs~L~Elh~g~N~i~~lpae~----~~~L~~l~vLDLRdNklke~Pde~clLrsL~r----------LDlSN 284 (565)
T KOG0472|consen 219 RFLPEFPGCSLLKELHVGENQIEMLPAEH----LKHLNSLLVLDLRDNKLKEVPDEICLLRSLER----------LDLSN 284 (565)
T ss_pred ccCCCCCccHHHHHHHhcccHHHhhHHHH----hcccccceeeeccccccccCchHHHHhhhhhh----------hcccC
Confidence 99999999999999999999887653211 12477888899999999998877766665554 46778
Q ss_pred Ccc-ccccccccccccceeeccCCh
Q 001385 359 NRV-VVGKDENAVRQLISMISSDNR 382 (1088)
Q Consensus 359 N~l-~ip~~~~~Lp~L~~L~Ls~N~ 382 (1088)
|.+ .+|..+|++ +|+.|.+.+||
T Consensus 285 N~is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 285 NDISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred CccccCCcccccc-eeeehhhcCCc
Confidence 877 788889999 99999999998
No 41
>cd07224 Pat_like Patatin-like phospholipase. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of lipid acyl hydrolase, catalysing the cleavage of fatty acids from membrane lipids. Members of this family have been found also in vertebrates.
Probab=99.77 E-value=2.2e-18 Score=185.17 Aligned_cols=158 Identities=15% Similarity=0.160 Sum_probs=115.0
Q ss_pred EEecCCCchHHHHHHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhcCCCCHHHHHHHHHHhhccccCCCCCCCchh
Q 001385 543 LSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVFAEPFPKDNEA 622 (1088)
Q Consensus 543 LsLdGGG~RG~~~~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~~~~s~~e~~~~y~~~~~~iF~~~~~~~~~~ 622 (1088)
|+|.|||.+|+||+|||++|+|+ .+...|+.|+|||+||++|++++.+ .+.+++.+++.++..+.+...
T Consensus 2 lsfsggG~lg~yh~GVl~~L~e~---gi~~~~~~i~G~SAGAl~aa~~asg-~~~~~~~~~~~~~~~~~~~~~------- 70 (233)
T cd07224 2 FSFSAAGLLFPYHLGVLSLLIEA---GVINETTPLAGASAGSLAAACSASG-LSPEEALEATEELAEDCRSNG------- 70 (233)
T ss_pred eeecchHHHHHHHHHHHHHHHHc---CCCCCCCEEEEEcHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHhcC-------
Confidence 79999999999999999999886 3444589999999999999999986 789889888887765443221
Q ss_pred hhHHHHHHHHhhcccccceeEeccCCC-CHHHHHHHHHHHhcCCCCCchhccccCCCCEEEEEEeeeccCCC-ccEEeec
Q 001385 623 ATWREKLDQIYKSSSQSFRVVVHGSKH-SADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMPA-QPFIFRN 700 (1088)
Q Consensus 623 ~~w~~~~~~~~~~~~~~~~~~~~~~~~-~~~~le~~Lk~~~~~~~g~~~~~~~~~~~~k~~vv~t~~d~~~~-~~~lf~n 700 (1088)
..+ -...+++.+++.+.. ...+. ..+ .++++++| ++.++ +..+++.
T Consensus 71 ------------------------~~~~~~~~l~~~l~~~lp~----d~~e~-~~~-~~l~i~~T--~~~~~~~~~~v~~ 118 (233)
T cd07224 71 ------------------------TAFRLGGVLRDELDKTLPD----DAHER-CNR-GRIRVAVT--QLFPVPRGLLVSS 118 (233)
T ss_pred ------------------------CcccHHHHHHHHHHHHcCc----HHHHH-hcC-CCEEEEEE--ecccCCCceEEEe
Confidence 001 124566667776632 22222 222 35566666 55554 3556655
Q ss_pred CCCCCCCCCCCccccCCCCccccCCCCCCCccccccccccCCCcchHHHHHHHhcCCCCCCC---CccCCCceeeeCccc
Q 001385 701 YQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLD---DFSDDVFRWQDGAIV 777 (1088)
Q Consensus 701 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dA~rASsAaP~yF~---p~~~~~~~~vDGGl~ 777 (1088)
+... -.+.+|++|||++|+||+ +++++++.|+|||+.
T Consensus 119 f~~~----------------------------------------~~l~~al~AS~~iP~~~~p~~~v~~~G~~~vDGG~~ 158 (233)
T cd07224 119 FDSK----------------------------------------SDLIDALLASCNIPGYLAPWPATMFRGKLCVDGGFA 158 (233)
T ss_pred cCCc----------------------------------------chHHHHHHHhccCCcccCCCCCeeECCEEEEeCCcc
Confidence 5321 128899999999999998 468999999999999
Q ss_pred CCChHH
Q 001385 778 ANNPTI 783 (1088)
Q Consensus 778 ~NNP~~ 783 (1088)
+|.|..
T Consensus 159 ~~~P~~ 164 (233)
T cd07224 159 LFIPPT 164 (233)
T ss_pred cCCCCC
Confidence 999986
No 42
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.76 E-value=1e-20 Score=203.27 Aligned_cols=245 Identities=21% Similarity=0.209 Sum_probs=219.6
Q ss_pred hhcCCCCCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCccccccCCCC
Q 001385 119 RVVKRREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPV 198 (1088)
Q Consensus 119 ~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~ 198 (1088)
+..+.-..|..|.+++|.+.. +.+.+.++..|.+|++.+|+ ....|..++.+..++.|+.++|+++++|+.+..+.+
T Consensus 39 e~wW~qv~l~~lils~N~l~~-l~~dl~nL~~l~vl~~~~n~--l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~ 115 (565)
T KOG0472|consen 39 ENWWEQVDLQKLILSHNDLEV-LREDLKNLACLTVLNVHDNK--LSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLIS 115 (565)
T ss_pred hhhhhhcchhhhhhccCchhh-ccHhhhcccceeEEEeccch--hhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhh
Confidence 334455678889999999876 44568899999999999998 445677888999999999999999999999999999
Q ss_pred CcEEEccCCCCCCCchhhcCCCCCcEEEccCCcCcccchhccCCCCCCEEEeccCCCCCCcccccCCccccEEEecCCCC
Q 001385 199 LEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVELRECVGLVELSLEHNRLVRPLLDFRAMAELKILRLFGNPL 278 (1088)
Q Consensus 199 L~~L~L~~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~~~~~l~~l~~L~~L~Ls~N~l 278 (1088)
|..|++++|.+..+|++++.+-.|+.|+..+|+++++|..+.++.+|..|++.+|++...+++.-+++.|++||+..|-+
T Consensus 116 l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L 195 (565)
T KOG0472|consen 116 LVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLL 195 (565)
T ss_pred hhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999998766699999999999999
Q ss_pred CCCc-cccCCCCCCeEEeeCCCCCCCccccchhhhhcCcCCccccccccchhhhHHhhh-cccCCCCcchhHHHhhhhcC
Q 001385 279 EFLP-EILPLLKLRHLSLANIRIVADENLRSVNVQIEMENNSYFGASRHKLSAFFSLIF-RFSSCHHPLLASALAKIMQD 356 (1088)
Q Consensus 279 ~~l~-~l~~l~~L~~L~L~~N~l~~~~~l~~l~~~~~l~~l~~l~l~~n~l~~~~~~l~-~l~~l~~l~l~~~L~~i~~l 356 (1088)
+.+| +++.+.+|..|+|..|+|..++.++. +..|..+++..|.+..+|.... ++.++. ++++
T Consensus 196 ~tlP~~lg~l~~L~~LyL~~Nki~~lPef~g------cs~L~Elh~g~N~i~~lpae~~~~L~~l~----------vLDL 259 (565)
T KOG0472|consen 196 ETLPPELGGLESLELLYLRRNKIRFLPEFPG------CSLLKELHVGENQIEMLPAEHLKHLNSLL----------VLDL 259 (565)
T ss_pred hcCChhhcchhhhHHHHhhhcccccCCCCCc------cHHHHHHHhcccHHHhhHHHHhcccccce----------eeec
Confidence 9555 89999999999999999999887775 7888999999999999987664 666654 3688
Q ss_pred CCCcc-ccccccccccccceeeccCCh
Q 001385 357 QENRV-VVGKDENAVRQLISMISSDNR 382 (1088)
Q Consensus 357 ~~N~l-~ip~~~~~Lp~L~~L~Ls~N~ 382 (1088)
..|++ ++|.++.-+.+|..|++|+|.
T Consensus 260 RdNklke~Pde~clLrsL~rLDlSNN~ 286 (565)
T KOG0472|consen 260 RDNKLKEVPDEICLLRSLERLDLSNND 286 (565)
T ss_pred cccccccCchHHHHhhhhhhhcccCCc
Confidence 99999 999999999999999999998
No 43
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.75 E-value=2.1e-18 Score=180.95 Aligned_cols=177 Identities=24% Similarity=0.342 Sum_probs=158.5
Q ss_pred chhHHHhhhhcCCCCccccccccccccccceeeccCChhhhhhHHHHhccccCCchhh-HHHHHCCCcHHHHHHhccCCh
Q 001385 345 LLASALAKIMQDQENRVVVGKDENAVRQLISMISSDNRHVVEQACSALSSLAGDVSVA-MLLMKCDIMQPIIAVLKSFAP 423 (1088)
Q Consensus 345 ~l~~~L~~i~~l~~N~l~ip~~~~~Lp~L~~L~Ls~N~~v~~~a~~~L~~L~~~~~~~-~~l~~~~~~~~Ll~lL~~~~~ 423 (1088)
..+|+|++|.....++..+..+.+..|-+..|..+.+..|.++++|+|||++++++.+ +.++.||++++++.++.+...
T Consensus 134 EAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~ 213 (526)
T COG5064 134 EAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAI 213 (526)
T ss_pred HHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccc
Confidence 4589999999999999988889999999999999999999999999999999999999 999999999999888765443
Q ss_pred -------------------------HHHHHHHHHHHhhhccChHH-------------------HHHHhhhhhHHHHHHH
Q 001385 424 -------------------------EEVKSVLQVVGQLAFASDTV-------------------AQKMLTKDVLKSLKLL 459 (1088)
Q Consensus 424 -------------------------~~~~~~l~~L~~L~~~sd~~-------------------~~~v~~~g~lp~L~~L 459 (1088)
..+..+++.|..|++.-|.+ ++.+++.|++++|++|
T Consensus 214 ~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvEl 293 (526)
T COG5064 214 HISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVEL 293 (526)
T ss_pred hHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHH
Confidence 33344566666666544433 6789999999999999
Q ss_pred hcCCChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcCCchhHHHHHHHHHHhhc
Q 001385 460 CAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILG 521 (1088)
Q Consensus 460 l~~~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~ 521 (1088)
+.++...+|++|++.+||+++|++.|+++++++|+++.|..++.++.+.++|+|||+++++.
T Consensus 294 Ls~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNIT 355 (526)
T COG5064 294 LSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNIT 355 (526)
T ss_pred hcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccc
Confidence 99999999999999999999999999999999999999999999999999999999999983
No 44
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=99.72 E-value=7.9e-17 Score=187.24 Aligned_cols=184 Identities=27% Similarity=0.400 Sum_probs=131.2
Q ss_pred ceEEEecCCCchHHHHHHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhcCCCCHHHHHHHHHHhhccccCCCCCCC
Q 001385 540 LRILSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVFAEPFPKD 619 (1088)
Q Consensus 540 ~riLsLdGGG~RG~~~~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~~~~s~~e~~~~y~~~~~~iF~~~~~~~ 619 (1088)
--.|+|.|||+||++|+|||++|||. +..+|+|.|||+||++++++|-. .+.-.+..--++.+.++
T Consensus 839 aIgLVLGGGGARG~ahiGvl~ALeE~-----GIPvD~VGGTSIGafiGaLYA~e-~d~~~v~~rak~f~~~m-------- 904 (1158)
T KOG2968|consen 839 AIGLVLGGGGARGAAHIGVLQALEEA-----GIPVDMVGGTSIGAFIGALYAEE-RDLVPVFGRAKKFAGKM-------- 904 (1158)
T ss_pred eEEEEecCcchhhhhHHHHHHHHHHc-----CCCeeeeccccHHHhhhhhhhcc-CcchHHHHHHHHHHHHH--------
Confidence 45799999999999999999999997 44589999999999999999854 34333322222222111
Q ss_pred chhhhHHHHHHHHhhcccccceeEeccCCCCHHHHHHHHHHHhcCCCCCchhccccCCCCEEEEEEeeeccCCCccEEee
Q 001385 620 NEAATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMPAQPFIFR 699 (1088)
Q Consensus 620 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~Lk~~~~~~~g~~~~~~~~~~~~k~~vv~t~~d~~~~~~~lf~ 699 (1088)
...|+..++-.|. .-+.|.+..+..-+.+.| ||..++|...+. |+++| |+......+.+
T Consensus 905 --ssiw~~llDLTyP----------~tsmftGh~FNrsI~~~F----gd~~IEDlWi~y---fciTT--dIt~S~mriH~ 963 (1158)
T KOG2968|consen 905 --SSIWRLLLDLTYP----------ITSMFTGHEFNRSIHSTF----GDVLIEDLWIPY---FCITT--DITSSEMRVHR 963 (1158)
T ss_pred --HHHHHHHHhcccc----------chhccchhhhhhHHHHHh----cccchhhhhhee---eeccc--ccchhhhhhhc
Confidence 1234444433332 245678888889999999 677788776543 34444 66655555544
Q ss_pred cCCCCCCCCCCCccccCCCCccccCCCCCCCccccccccccCCCcchHHHHHHHhcCCCCCCCCccC--CCceeeeCccc
Q 001385 700 NYQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLDDFSD--DVFRWQDGAIV 777 (1088)
Q Consensus 700 ny~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dA~rASsAaP~yF~p~~~--~~~~~vDGGl~ 777 (1088)
| ..+|.-+|||++.-+|.||..- +|..+.|||.+
T Consensus 964 ~--------------------------------------------G~~WrYvRASMsLaGylPPlcdp~dGhlLlDGGYv 999 (1158)
T KOG2968|consen 964 N--------------------------------------------GSLWRYVRASMSLAGYLPPLCDPKDGHLLLDGGYV 999 (1158)
T ss_pred C--------------------------------------------CchHHHHHhhccccccCCCCCCCCCCCEEeccccc
Confidence 3 2399999999999999999876 78999999999
Q ss_pred CCChHHHHHHHHHHhCCCCCCCEEEEECCCC
Q 001385 778 ANNPTIFAIREAQLLWPDTRIDCLVSIGCGS 808 (1088)
Q Consensus 778 ~NNP~~~Ai~Ea~~~~p~~~i~~vvSlGTG~ 808 (1088)
+|-|+.+ ++.+. .+..+.|.+|+-.
T Consensus 1000 nNlPadv----mrslG--a~~iiAiDVGS~d 1024 (1158)
T KOG2968|consen 1000 NNLPADV----MRSLG--AKVIIAIDVGSQD 1024 (1158)
T ss_pred ccCcHHH----HHhcC--CcEEEEEeccCcc
Confidence 9999998 55554 3433567777543
No 45
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.69 E-value=4e-19 Score=170.62 Aligned_cols=165 Identities=22% Similarity=0.252 Sum_probs=128.8
Q ss_pred hhcCCCCCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCccccccCCCC
Q 001385 119 RVVKRREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPV 198 (1088)
Q Consensus 119 ~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~ 198 (1088)
..+-++++++.|.|++|+++. +|..+..+.+|++|++++|+ ...+|..+..+++|+.|+++-|++..+|..|+.++.
T Consensus 27 ~gLf~~s~ITrLtLSHNKl~~-vppnia~l~nlevln~~nnq--ie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~ 103 (264)
T KOG0617|consen 27 PGLFNMSNITRLTLSHNKLTV-VPPNIAELKNLEVLNLSNNQ--IEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPA 103 (264)
T ss_pred ccccchhhhhhhhcccCceee-cCCcHHHhhhhhhhhcccch--hhhcChhhhhchhhhheecchhhhhcCccccCCCch
Confidence 445566777788888888765 66678888888888888887 455677777888888888888888888888888888
Q ss_pred CcEEEccCCCCC--CCchhhcCCCCCcEEEccCCcCcccchhccCCCCCCEEEeccCCCCCCcccccCCccccEEEecCC
Q 001385 199 LEKLYLDNNKLS--TLPPELGAMKNLKVLIVDNNMLVCVPVELRECVGLVELSLEHNRLVRPLLDFRAMAELKILRLFGN 276 (1088)
Q Consensus 199 L~~L~L~~N~l~--~lp~~l~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~~~~~l~~l~~L~~L~Ls~N 276 (1088)
|+.|||.+|++. .+|..|..+..|+.|+|++|.+..+|..++++++|+.|.+.+|.+-.++.+++.++.|+.|++.+|
T Consensus 104 levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 104 LEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccc
Confidence 888888888887 778777778888888888888888888888888888888888888777777888888888888888
Q ss_pred CCCC-CccccC
Q 001385 277 PLEF-LPEILP 286 (1088)
Q Consensus 277 ~l~~-l~~l~~ 286 (1088)
+++. +|+++.
T Consensus 184 rl~vlppel~~ 194 (264)
T KOG0617|consen 184 RLTVLPPELAN 194 (264)
T ss_pred eeeecChhhhh
Confidence 8873 335543
No 46
>COG4667 Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]
Probab=99.68 E-value=1.1e-15 Score=157.63 Aligned_cols=170 Identities=24% Similarity=0.304 Sum_probs=106.0
Q ss_pred CceEEEecCCCchHHHHHHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhcCCCCHHHHHHHHHHhh--ccccCCCC
Q 001385 539 GLRILSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLG--KLVFAEPF 616 (1088)
Q Consensus 539 ~~riLsLdGGG~RG~~~~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~~~~s~~e~~~~y~~~~--~~iF~~~~ 616 (1088)
+.-.|++.|||+||++++|||.+++..- ..+||+|.|||+||..++.+-..+ .........+.. ++.|.-
T Consensus 10 ~kvaLV~EGGG~RgifTAGVLD~fl~a~----~~~f~~~~GvSAGA~n~~aYls~Q--~gra~~~~~~yt~d~ry~~~-- 81 (292)
T COG4667 10 GKVALVLEGGGQRGIFTAGVLDEFLRAN----FNPFDLVVGVSAGALNLVAYLSKQ--RGRARRVIVEYTTDRRYFGP-- 81 (292)
T ss_pred CcEEEEEecCCccceehHHHHHHHHHhc----cCCcCeeeeecHhHHhHHHHhhcC--CchHHHHHHHhhcchhhcch--
Confidence 4568999999999999999999998541 456999999999999998875431 222222222222 222221
Q ss_pred CCCchhhhHHHHHHHHhhcccccceeEeccCCCCHHHHHHHHHHHhcCCCCCchhccccCCCCEEEEEEeeeccCCCc-c
Q 001385 617 PKDNEAATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMPAQ-P 695 (1088)
Q Consensus 617 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~Lk~~~~~~~g~~~~~~~~~~~~k~~vv~t~~d~~~~~-~ 695 (1088)
. +.+..+..++.+.+-+.+-+.. -.++++.......+.++.+| +..+++ +
T Consensus 82 ---------~--------------~~vr~gn~~n~d~~~~~~~~~~----~~fD~~tf~~~~~k~~~~~~--~~~~g~~~ 132 (292)
T COG4667 82 ---------L--------------SFVRGGNYFNLDWAFEETPQKL----FPFDFDTFSQDKGKFFYMAT--CRQDGEAV 132 (292)
T ss_pred ---------h--------------hhhccCcccchHHHHhhccCcC----CCccHHHHhcccCCeEEEEE--eccCCccc
Confidence 1 1112233344333332222211 12233333334445455444 444554 3
Q ss_pred EEeecCCCCCCCCCCCccccCCCCccccCCCCCCCccccccccccCCCcchHHHHHHHhcCCCCCCCCccCCCceeeeCc
Q 001385 696 FIFRNYQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLDDFSDDVFRWQDGA 775 (1088)
Q Consensus 696 ~lf~ny~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dA~rASsAaP~yF~p~~~~~~~~vDGG 775 (1088)
++|..- ..-..|++|||||+|.|-++++++|..|+|||
T Consensus 133 ~~~~~~------------------------------------------~~~~m~viRASSaiPf~~~~V~i~G~~YlDGG 170 (292)
T COG4667 133 YYFLPD------------------------------------------VFNWLDVIRASSAIPFYSEGVEINGKNYLDGG 170 (292)
T ss_pred eeeccc------------------------------------------HHHHHHHHHHhccCCCCCCCeEECCEecccCc
Confidence 333321 12377999999999988899999999999999
Q ss_pred ccCCChHHHHHH
Q 001385 776 IVANNPTIFAIR 787 (1088)
Q Consensus 776 l~~NNP~~~Ai~ 787 (1088)
|.+..|+..|+.
T Consensus 171 IsdsIPvq~a~~ 182 (292)
T COG4667 171 ISDSIPVKEAIR 182 (292)
T ss_pred ccccccchHHHH
Confidence 999999887544
No 47
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=6.1e-17 Score=184.66 Aligned_cols=178 Identities=25% Similarity=0.339 Sum_probs=157.5
Q ss_pred chhHHHhhhhcCCCCccccccccccccccceeeccCChhhhhhHHHHhccccCCchhh-HHHHHCCCcHHHHHHhccCCh
Q 001385 345 LLASALAKIMQDQENRVVVGKDENAVRQLISMISSDNRHVVEQACSALSSLAGDVSVA-MLLMKCDIMQPIIAVLKSFAP 423 (1088)
Q Consensus 345 ~l~~~L~~i~~l~~N~l~ip~~~~~Lp~L~~L~Ls~N~~v~~~a~~~L~~L~~~~~~~-~~l~~~~~~~~Ll~lL~~~~~ 423 (1088)
..+|+|++|+............-+.+|.+..|.-+.+..|+++++|+|||++++++.+ +.++++|++.+|+.++....+
T Consensus 129 eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~ 208 (514)
T KOG0166|consen 129 EAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDK 208 (514)
T ss_pred HHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccc
Confidence 5589999999888877777788899999999999999999999999999999999999 999999999999988876553
Q ss_pred ------------------------HHHHHHHHHHHhhhccChHH-------------------HHHHhhhhhHHHHHHHh
Q 001385 424 ------------------------EEVKSVLQVVGQLAFASDTV-------------------AQKMLTKDVLKSLKLLC 460 (1088)
Q Consensus 424 ------------------------~~~~~~l~~L~~L~~~sd~~-------------------~~~v~~~g~lp~L~~Ll 460 (1088)
+.+..+|++|..+.++.|.. ++.+++.|++|+|+.|+
T Consensus 209 ~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL 288 (514)
T KOG0166|consen 209 LSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLL 288 (514)
T ss_pred hHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHH
Confidence 33444566666666555543 78999999999999999
Q ss_pred cCCChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhc-CCchhHHHHHHHHHHhhcc
Q 001385 461 AHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTV-GPEPRVNKAAARALAILGE 522 (1088)
Q Consensus 461 ~~~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~-~~~~~v~~~a~~aL~~l~~ 522 (1088)
.+....++++|++++||+++|+++|++.+++++++++|..++. +....++++|||+++++..
T Consensus 289 ~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA 351 (514)
T KOG0166|consen 289 GHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITA 351 (514)
T ss_pred cCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999998 6677799999999999853
No 48
>cd07223 Pat_PNPLA5-mammals Patatin-like phospholipase domain containing protein 5. PNPLA5, also known as GS2L (GS2-like), plays a role in regulation of adipocyte differentiation. PNPLA5 is expressed in brain tissue in high mRNA levels and low levels in liver tissue. There is no concrete evidence in support of the enzymatic activity of GS2L. This family includes patatin-like proteins: GS2L (GS2-like) and PNPLA5 (Patatin-like phospholipase domain-containing protein 5) reported exclusively in mammals.
Probab=99.67 E-value=5.4e-16 Score=170.47 Aligned_cols=169 Identities=18% Similarity=0.212 Sum_probs=123.4
Q ss_pred CCceEEEecCCCchHHHHHHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhcCCCCHHHHHHHHHHhhccccCCCCC
Q 001385 538 QGLRILSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVFAEPFP 617 (1088)
Q Consensus 538 ~~~riLsLdGGG~RG~~~~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~~~~s~~e~~~~y~~~~~~iF~~~~~ 617 (1088)
.+---|+|.|||.+|+||+||+++|.+. +.++....+-|+|||+|||+|++++.+ .++++|.+...++.+.+=..
T Consensus 7 ~~~~~LsfSGgGflG~yHvGV~~~L~e~-~p~ll~~~~~iaGaSAGAL~aa~~a~g-~~~~~~~~~i~~ia~~~r~~--- 81 (405)
T cd07223 7 EGGWNLSFSGAGYLGLYHVGVTECLRQR-APRLLQGARRIYGSSSGALNAVSIVCG-KSADFCCSNLLGMVKHLERL--- 81 (405)
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHHh-CchhhccCCeeeeeCHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhhhh---
Confidence 3445699999999999999999999887 344445567799999999999999875 78997766655444322100
Q ss_pred CCchhhhHHHHHHHHhhcccccceeEeccCCC-CHHHHHHHHHHHhcCCCCCchhccccCCCCEEEEEEeeeccCCCccE
Q 001385 618 KDNEAATWREKLDQIYKSSSQSFRVVVHGSKH-SADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMPAQPF 696 (1088)
Q Consensus 618 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~-~~~~le~~Lk~~~~~~~g~~~~~~~~~~~~k~~vv~t~~d~~~~~~~ 696 (1088)
+.+..++.| -.+.+++.|++++.+. . ... -..+..|.+| ++..++.+
T Consensus 82 -----------------------~lG~~~p~f~l~~~lr~~L~~~LP~d---a-He~---~sgrL~ISlT--~l~~gknv 129 (405)
T cd07223 82 -----------------------SLGIFHPAYAPIEHIRQQLQESLPPN---I-HIL---ASQRLGISMT--RWPDGRNF 129 (405)
T ss_pred -----------------------ccCCCCccccHHHHHHHHHHHhCCch---h-hHH---hCCceEEEEE--EccCCceE
Confidence 001122333 2456777888877421 1 111 1235556666 68899999
Q ss_pred EeecCCCCCCCCCCCccccCCCCccccCCCCCCCccccccccccCCCcchHHHHHHHhcCCCCC--CCCccCCCceeeeC
Q 001385 697 IFRNYQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYY--LDDFSDDVFRWQDG 774 (1088)
Q Consensus 697 lf~ny~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dA~rASsAaP~y--F~p~~~~~~~~vDG 774 (1088)
+.++|... -.+.||+.|||.+|+| |.|..++|..||||
T Consensus 130 lvS~F~Sr----------------------------------------edLIqALlASc~IP~y~g~~P~~~rG~~yVDG 169 (405)
T cd07223 130 IVTDFATR----------------------------------------DELIQALICTLYFPFYCGIIPPEFRGERYIDG 169 (405)
T ss_pred EecCCCCH----------------------------------------HHHHHHHHHhccCccccCCCCceECCEEEEcC
Confidence 98888632 2489999999999999 88999999999999
Q ss_pred cccCCChHH
Q 001385 775 AIVANNPTI 783 (1088)
Q Consensus 775 Gl~~NNP~~ 783 (1088)
|+.+|.|..
T Consensus 170 GvsnNLP~~ 178 (405)
T cd07223 170 ALSNNLPFS 178 (405)
T ss_pred cccccCCCc
Confidence 999999974
No 49
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.66 E-value=2.8e-16 Score=192.00 Aligned_cols=217 Identities=21% Similarity=0.184 Sum_probs=123.4
Q ss_pred CCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCccccccCCCCCcEEEc
Q 001385 125 EPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPVLEKLYL 204 (1088)
Q Consensus 125 ~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 204 (1088)
++|+.|++.+|+|+. +|. .+++|++|+|++|+ +.. +|.. .++|+.|+|++|.|+.+|... .+|+.|+|
T Consensus 222 ~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~-Lts-LP~l---p~sL~~L~Ls~N~L~~Lp~lp---~~L~~L~L 289 (788)
T PRK15387 222 AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQ-LTS-LPVL---PPGLLELSIFSNPLTHLPALP---SGLCKLWI 289 (788)
T ss_pred cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCc-cCc-ccCc---ccccceeeccCCchhhhhhch---hhcCEEEC
Confidence 367777777777665 443 24667777777776 332 2322 245566666666665555322 34455555
Q ss_pred cCCCCCCCchhhcCCCCCcEEEccCCcCcccchhccC-----------------CCCCCEEEeccCCCCCCcccccCCcc
Q 001385 205 DNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVELRE-----------------CVGLVELSLEHNRLVRPLLDFRAMAE 267 (1088)
Q Consensus 205 ~~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~lp~~l~~-----------------l~~L~~L~Ls~N~l~~~~~~l~~l~~ 267 (1088)
++|+++.+|.. +++|+.|+|++|+|+.+|..... ..+|+.|+|++|+|+.++.. ..+
T Consensus 290 s~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~LP~l---p~~ 363 (788)
T PRK15387 290 FGNQLTSLPVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLASLPTL---PSE 363 (788)
T ss_pred cCCcccccccc---ccccceeECCCCccccCCCCcccccccccccCccccccccccccceEecCCCccCCCCCC---Ccc
Confidence 55555555431 24455555555555544431110 12455666666666554421 234
Q ss_pred ccEEEecCCCCCCCccccCCCCCCeEEeeCCCCCCCccccchhhhhcCcCCccccccccchhhhHHhhhcccCCCCcchh
Q 001385 268 LKILRLFGNPLEFLPEILPLLKLRHLSLANIRIVADENLRSVNVQIEMENNSYFGASRHKLSAFFSLIFRFSSCHHPLLA 347 (1088)
Q Consensus 268 L~~L~Ls~N~l~~l~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~~~~l~~l~~l~l~~n~l~~~~~~l~~l~~l~~l~l~ 347 (1088)
|+.|++++|.|+.+|.+ ..+|+.|+|++|.|+.++.+ ..+|+.|++++|.++.+|....
T Consensus 364 L~~L~Ls~N~L~~LP~l--~~~L~~LdLs~N~Lt~LP~l--------~s~L~~LdLS~N~LssIP~l~~----------- 422 (788)
T PRK15387 364 LYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLTSLPVL--------PSELKELMVSGNRLTSLPMLPS----------- 422 (788)
T ss_pred cceehhhccccccCccc--ccccceEEecCCcccCCCCc--------ccCCCEEEccCCcCCCCCcchh-----------
Confidence 55556666666555533 24566666666666654322 2356667777777666543211
Q ss_pred HHHhhhhcCCCCcc-ccccccccccccceeeccCCh
Q 001385 348 SALAKIMQDQENRV-VVGKDENAVRQLISMISSDNR 382 (1088)
Q Consensus 348 ~~L~~i~~l~~N~l-~ip~~~~~Lp~L~~L~Ls~N~ 382 (1088)
.+. .+++.+|++ .+|..+..+++|..|++++|+
T Consensus 423 -~L~-~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 423 -GLL-SLSVYRNQLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred -hhh-hhhhccCcccccChHHhhccCCCeEECCCCC
Confidence 121 246778888 889889999999999999998
No 50
>cd01819 Patatin_and_cPLA2 Patatins and Phospholipases. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates. This family also includes the catalytic domain of cytosolic phospholipase A2 (PLA2; EC 3.1.1.4) hydrolyzes the sn-2-acyl ester bond of phospholipids to release arachidonic acid. At the active site, cPLA2 contains a serine nucleophile through which the catalytic mechanism is initiated. The active site is partially covered by a solvent-accessible flexible lid. cPLA2 displays interfacial activation as it exists in both "closed lid" and "open lid" forms.
Probab=99.66 E-value=2.3e-16 Score=158.71 Aligned_cols=142 Identities=23% Similarity=0.332 Sum_probs=102.2
Q ss_pred EEecCCCchHHHHHHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhcCCCCHHHHHHHHHHhhccccCCCCCCCchh
Q 001385 543 LSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVFAEPFPKDNEA 622 (1088)
Q Consensus 543 LsLdGGG~RG~~~~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~~~~s~~e~~~~y~~~~~~iF~~~~~~~~~~ 622 (1088)
|+|+|||+||++++|||++|+++ .+.+.||+|+|||+||++|+.++- ..+
T Consensus 1 l~~~GGg~~~~~~~gvl~~l~~~---~~~~~~~~~~G~SaGa~~~~~~~p-----------------~~~---------- 50 (155)
T cd01819 1 LSFSGGGFRGMYHAGVLSALAER---GLLDCVTYLAGTSGGAWVAATLYP-----------------PSS---------- 50 (155)
T ss_pred CEEcCcHHHHHHHHHHHHHHHHh---CCccCCCEEEEEcHHHHHHHHHhC-----------------hhh----------
Confidence 68999999999999999999886 344689999999999999999970 000
Q ss_pred hhHHHHHHHHhhcccccceeEeccCCCCHHHHHHHHHHHhcCCCCCchhccccCCCCEEEEEEeeeccCCCccEEeecCC
Q 001385 623 ATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMPAQPFIFRNYQ 702 (1088)
Q Consensus 623 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~Lk~~~~~~~g~~~~~~~~~~~~k~~vv~t~~d~~~~~~~lf~ny~ 702 (1088)
.+ +. ...+.+.+. ...+..+++| +..++++.+|....
T Consensus 51 -~~------------------------~~-~~~~~~~~~---------------~~~~~~i~~T--~~~tG~~~~~~~~~ 87 (155)
T cd01819 51 -SL------------------------DN-KPRQSLEEA---------------LSGKLWVSFT--PVTAGENVLVSRFV 87 (155)
T ss_pred -hh------------------------hh-hhhhhhHHh---------------cCCCeEEEEE--EcCCCcEEEEeccc
Confidence 00 00 001111111 1122335544 78899998877432
Q ss_pred CCCCCCCCCccccCCCCccccCCCCCCCccccccccccCCCcchHHHHHHHhcCCCCCCCCccC------------CCce
Q 001385 703 YPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLDDFSD------------DVFR 770 (1088)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dA~rASsAaP~yF~p~~~------------~~~~ 770 (1088)
++..+++|++||++.|.+|+++.. ++..
T Consensus 88 ----------------------------------------~~~~~~~av~aS~s~P~~f~~v~~~~~~~~~~~~~~~g~~ 127 (155)
T cd01819 88 ----------------------------------------SKEELIRALFASGSWPSYFGLIPPAELYTSKSNLKEKGVR 127 (155)
T ss_pred ----------------------------------------cchHHHHHHhHHhhhhhhcCCcccccccccccccccCCeE
Confidence 122489999999999999998755 8999
Q ss_pred eeeCcccCCChHHHHHHHHHHhCCCCCCCEEEE
Q 001385 771 WQDGAIVANNPTIFAIREAQLLWPDTRIDCLVS 803 (1088)
Q Consensus 771 ~vDGGl~~NNP~~~Ai~Ea~~~~p~~~i~~vvS 803 (1088)
|+|||+.+|+|+... +-+.+..+++||
T Consensus 128 lVDGG~~~~iP~~~~------~~~~r~~~viis 154 (155)
T cd01819 128 LVDGGVSNNLPAPVL------LRPGRGVTLTIS 154 (155)
T ss_pred EeccceecCcCCccc------ccCCCCCeEEeC
Confidence 999999999999875 334566667776
No 51
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.66 E-value=9.7e-19 Score=168.00 Aligned_cols=162 Identities=27% Similarity=0.325 Sum_probs=124.2
Q ss_pred cccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCccccccCCCCCcEEEccCCCCCCCchhhcCCCCCcE
Q 001385 145 IGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPVLEKLYLDNNKLSTLPPELGAMKNLKV 224 (1088)
Q Consensus 145 l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~ 224 (1088)
+.++.+++.|.||+|+ ....|..+..+.+|+.|++++|+|+++|..++.+++|+.|+++-|++..+|..|+.++.|++
T Consensus 29 Lf~~s~ITrLtLSHNK--l~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~lev 106 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNK--LTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEV 106 (264)
T ss_pred ccchhhhhhhhcccCc--eeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhh
Confidence 4456677777888887 33455566678888888888888888888888888888888888888888888888888888
Q ss_pred EEccCCcCc--ccchhccCCCCCCEEEeccCCCCCCcccccCCccccEEEecCCCCCCCc-cccCCCCCCeEEeeCCCCC
Q 001385 225 LIVDNNMLV--CVPVELRECVGLVELSLEHNRLVRPLLDFRAMAELKILRLFGNPLEFLP-EILPLLKLRHLSLANIRIV 301 (1088)
Q Consensus 225 L~Ls~N~l~--~lp~~l~~l~~L~~L~Ls~N~l~~~~~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~L~~N~l~ 301 (1088)
|||.+|++. .+|..|..|+.|+.|.|++|.+.-++++++++++|+.|.+..|.+-.+| +++.++.|+.|++.+|+++
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceee
Confidence 888888877 7777777777888888888888777777888888888888887766555 6777788888888888777
Q ss_pred C-Cccccc
Q 001385 302 A-DENLRS 308 (1088)
Q Consensus 302 ~-~~~l~~ 308 (1088)
- ++.+..
T Consensus 187 vlppel~~ 194 (264)
T KOG0617|consen 187 VLPPELAN 194 (264)
T ss_pred ecChhhhh
Confidence 6 444544
No 52
>KOG2214 consensus Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]
Probab=99.65 E-value=1.2e-15 Score=169.83 Aligned_cols=188 Identities=16% Similarity=0.334 Sum_probs=152.3
Q ss_pred CCCceEEEecCCCchHHHHHHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhcCCCCHHHHHHHHHHhhc---cccC
Q 001385 537 KQGLRILSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGK---LVFA 613 (1088)
Q Consensus 537 ~~~~riLsLdGGG~RG~~~~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~~~~s~~e~~~~y~~~~~---~iF~ 613 (1088)
.-|..+|+|+|||..|++|+|||+.|-++ .-...+|+|+|+|||+|+.+++. +-+|+..++...-. .||.
T Consensus 171 ~~GrTAL~LsGG~tFGlfH~GVlrtL~e~-----dLlP~IIsGsS~GaivAsl~~v~--~~eEl~~Ll~~~~~~~~~if~ 243 (543)
T KOG2214|consen 171 NFGRTALILSGGATFGLFHIGVLRTLLEQ-----DLLPNIISGSSAGAIVASLVGVR--SNEELKQLLTNFLHSLFNIFQ 243 (543)
T ss_pred hhCceEEEecCCchhhhhHHHHHHHHHHc-----cccchhhcCCchhHHHHHHHhhc--chHHHHHHhccchHhhhhhhc
Confidence 45689999999999999999999999654 11235899999999999999984 89999999876542 3455
Q ss_pred CCCCCCchhhhHHHHHHHHhhcccccceeEeccCCCCHHHHHHHHHHHhcCCCCCchhccccCCCCEEEEEEeeeccCCC
Q 001385 614 EPFPKDNEAATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMPA 693 (1088)
Q Consensus 614 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~Lk~~~~~~~g~~~~~~~~~~~~k~~vv~t~~d~~~~ 693 (1088)
... ..|...+++++. .|..+|...+..++++.. ++++|.+++...+|++.+++......+
T Consensus 244 dd~------~n~~~~ikr~~~----------~G~~~Di~~l~~~~~~~~----~~lTFqEAY~rTGrIlNItV~p~s~~e 303 (543)
T KOG2214|consen 244 DDL------GNLLTIIKRYFT----------QGALFDISHLACVMKKRL----GNLTFQEAYDRTGRILNIVVPPSSKSE 303 (543)
T ss_pred Ccc------hhHHHHHHHHHh----------cchHHHHHHHHHHHHHHh----cchhHHHHHHhhCceEEEEECccccCC
Confidence 532 256677776663 578899999999999999 689999999999999988887777788
Q ss_pred ccEEeecCCCCCCCCCCCccccCCCCccccCCCCCCCccccccccccCCCcchHHHHHHHhcCCCCCCCCcc--------
Q 001385 694 QPFIFRNYQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLDDFS-------- 765 (1088)
Q Consensus 694 ~~~lf~ny~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dA~rASsAaP~yF~p~~-------- 765 (1088)
.|.+..+.++| |+.||.|+.||||.|++|++-.
T Consensus 304 ~P~lLNylTaP---------------------------------------nVLIWSAV~aScs~pgif~~~~Ll~Kd~t~ 344 (543)
T KOG2214|consen 304 PPRLLNYLTAP---------------------------------------NVLIWSAVCASCSVPGIFESTPLLAKDLTN 344 (543)
T ss_pred ChhHhhccCCC---------------------------------------ceehhHHHHHhcccccccCccHHHHhhccC
Confidence 89988887765 6889999999999999998632
Q ss_pred --------CCCceeeeCcccCCChHHHHHHHHHHhCC
Q 001385 766 --------DDVFRWQDGAIVANNPTIFAIREAQLLWP 794 (1088)
Q Consensus 766 --------~~~~~~vDGGl~~NNP~~~Ai~Ea~~~~p 794 (1088)
....+|.||.+...+|... .+.+|.
T Consensus 345 ei~p~~~~~~~~r~~dgsl~~d~P~sr----L~ElFN 377 (543)
T KOG2214|consen 345 EIEPFIVTFSEPRFMDGSLDNDLPYSR----LKELFN 377 (543)
T ss_pred cEeeccCCccchhhccCcccccCcHHH----HHHHhc
Confidence 1234899999999999865 556663
No 53
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.64 E-value=5.3e-16 Score=190.95 Aligned_cols=224 Identities=22% Similarity=0.230 Sum_probs=173.3
Q ss_pred CCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCccccccCCCCCcEEEc
Q 001385 125 EPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPVLEKLYL 204 (1088)
Q Consensus 125 ~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 204 (1088)
++|+.|+|++|+|+. +|..+. .+|+.|+|++|+ +.. +|..+ ..+|+.|+|++|.++.+|..+. .+|++|+|
T Consensus 199 ~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~-Lts-LP~~l--~~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~L 269 (754)
T PRK15370 199 EQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQ-LTS-IPATL--PDTIQEMELSINRITELPERLP--SALQSLDL 269 (754)
T ss_pred cCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCc-ccc-CChhh--hccccEEECcCCccCcCChhHh--CCCCEEEC
Confidence 579999999999986 665553 589999999998 443 45443 2579999999999999998764 58999999
Q ss_pred cCCCCCCCchhhcCCCCCcEEEccCCcCcccchhccCCCCCCEEEeccCCCCCCcccccCCccccEEEecCCCCCCCccc
Q 001385 205 DNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVELRECVGLVELSLEHNRLVRPLLDFRAMAELKILRLFGNPLEFLPEI 284 (1088)
Q Consensus 205 ~~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~~~~~l~~l~~L~~L~Ls~N~l~~l~~l 284 (1088)
++|+|+.+|..+. .+|+.|+|++|+|+.+|..+. .+|+.|++++|.++.++..+ .++|+.|++++|.++.+|.-
T Consensus 270 s~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~Lt~LP~~ 343 (754)
T PRK15370 270 FHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLTALPETL--PPGLKTLEAGENALTSLPAS 343 (754)
T ss_pred cCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCccccCCccc--cccceeccccCCccccCChh
Confidence 9999999987664 589999999999998887654 47899999999999876544 36899999999999977742
Q ss_pred cCCCCCCeEEeeCCCCCCCccccchhhhhcCcCCccccccccchhhhHHhhhcccCCCCcchhHHHhhhhcCCCCcc-cc
Q 001385 285 LPLLKLRHLSLANIRIVADENLRSVNVQIEMENNSYFGASRHKLSAFFSLIFRFSSCHHPLLASALAKIMQDQENRV-VV 363 (1088)
Q Consensus 285 ~~l~~L~~L~L~~N~l~~~~~l~~l~~~~~l~~l~~l~l~~n~l~~~~~~l~~l~~l~~l~l~~~L~~i~~l~~N~l-~i 363 (1088)
. .++|+.|+|++|+|+.++.-. .++|+.|++++|.+..+|+.+.. . + +.+++.+|.+ .+
T Consensus 344 l-~~sL~~L~Ls~N~L~~LP~~l-------p~~L~~LdLs~N~Lt~LP~~l~~--s---------L-~~LdLs~N~L~~L 403 (754)
T PRK15370 344 L-PPELQVLDVSKNQITVLPETL-------PPTITTLDVSRNALTNLPENLPA--A---------L-QIMQASRNNLVRL 403 (754)
T ss_pred h-cCcccEEECCCCCCCcCChhh-------cCCcCEEECCCCcCCCCCHhHHH--H---------H-HHHhhccCCcccC
Confidence 2 379999999999998654211 35788999999999887754421 1 1 1245666766 45
Q ss_pred cccc----ccccccceeeccCChh
Q 001385 364 GKDE----NAVRQLISMISSDNRH 383 (1088)
Q Consensus 364 p~~~----~~Lp~L~~L~Ls~N~~ 383 (1088)
|..+ ..++++..|++.+|+.
T Consensus 404 P~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 404 PESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred chhHHHHhhcCCCccEEEeeCCCc
Confidence 5433 4568899999999983
No 54
>TIGR03607 patatin-related protein. This bacterial protein family contains an N-terminal patatin domain, where patatins are plant storage proteins capable of phospholipase activity (see pfam01734). Regions of strong sequence conservation are separated by regions of significant sequence and length variability. Members of the family are distributed sporadically among bacteria. The function is unknown.
Probab=99.60 E-value=2.3e-14 Score=172.80 Aligned_cols=219 Identities=20% Similarity=0.183 Sum_probs=135.4
Q ss_pred eEEEecCCCchHHHHHHHHHHHHHhcCC------------------------------CCCcccceEEecchHHHHHHHH
Q 001385 541 RILSMDGGGMKGLATVQILKEIEKGTGK------------------------------RIHELFDLVCGTSTGGMLAIAL 590 (1088)
Q Consensus 541 riLsLdGGG~RG~~~~~vL~~Le~~~~~------------------------------~i~~~FDli~GTStG~iiA~~l 590 (1088)
-.|+|-|||+|++|+.||+++|-+.... +....||+|||||+|||+|+++
T Consensus 4 lalVl~GG~slA~y~~GV~~ei~~l~~~~~~~~~~~~~~~~~~~~~Y~~l~~~l~~~~~~~~~~d~iaGTSAGAInaa~l 83 (739)
T TIGR03607 4 LALVMYGGVSLAVYMHGVTKEINRLVRASRAYHGYPDEASAGTEAVYGALLELLGAHLRLRVRVDVISGTSAGGINGVLL 83 (739)
T ss_pred EEEEecCcHHHHHHHHHHHHHHHHHhhhhcccccccccccccchhHHHHHHHHhhhhhccCCCCceEEeeCHHHHHHHHH
Confidence 3699999999999999999999764331 2357899999999999999999
Q ss_pred hc---CCCCHHHHHHHHHHhhc--cccCCCCCCCchhhhHHHHHHHHhhcccccceeEeccCCCCHHHHHHHHHHHhcCC
Q 001385 591 AV---KLMTLDQCEEIYKNLGK--LVFAEPFPKDNEAATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADE 665 (1088)
Q Consensus 591 ~~---~~~s~~e~~~~y~~~~~--~iF~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~Lk~~~~~~ 665 (1088)
|. .+++.+++.++|.+... +.+.... ..|. + ..-..+.|++++++++|++.+...
T Consensus 84 A~~~~~g~~~~~L~~~W~~~~d~~~lLd~~~------~~~~-------------~-~~~~~sLl~G~~l~~~L~~~L~~~ 143 (739)
T TIGR03607 84 AYALAYGADLDPLRDLWLELADIDALLRPDA------KAWP-------------R-LRRPGSLLDGEYFLPLLLDALAAM 143 (739)
T ss_pred HcccccCCCHHHHHHHHHhcccHHhhcChhh------hccc-------------c-ccCCccccccHHHHHHHHHHHHHh
Confidence 96 25799999999887643 1221100 0000 0 011244588899999999998754
Q ss_pred C--CCchhccccCC--CCEEEEEEeeeccCCCccEEee-cCCCCCCCCCCCccccCCCCccccCC-CCCCCccccccccc
Q 001385 666 D--GDLLIESSVKN--IPKVFTVSTLVNVMPAQPFIFR-NYQYPAGTPEVPFSISENSGITVLGS-PTTGAQVGYKRSAF 739 (1088)
Q Consensus 666 ~--g~~~~~~~~~~--~~k~~vv~t~~d~~~~~~~lf~-ny~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 739 (1088)
. ++..+.+.... ...++|++| |+ .|+...+. ++...... .+|...-.+.- ...+. ....+
T Consensus 144 ~~~~~~~~~~lp~~~~~~dL~VTaT--Dl-~G~~~~l~dd~~~~~~e-------~~hr~~f~F~~~~~~~~----~~~d~ 209 (739)
T TIGR03607 144 VRAGPAGPSLLPTGTRPLDLFVTAT--DL-RGRSTRLFDDDGTVVEE-------REHRGVFRFTEAGRAGG----RLSDF 209 (739)
T ss_pred CCCCCCCccccccCCCCccEEEEEE--cC-CCcEEEeecCCCccccc-------ccccceeeeecccCCCC----CCccc
Confidence 2 12233333321 245666665 77 55544433 33211100 01111111110 00000 01111
Q ss_pred cCCCcchHHHHHHHhcCCCCCCCCccC-----------------------------------CCceeeeCcccCCChHHH
Q 001385 740 IGSCKHQVWQAIRASSAAPYYLDDFSD-----------------------------------DVFRWQDGAIVANNPTIF 784 (1088)
Q Consensus 740 ~~~~~~~l~dA~rASsAaP~yF~p~~~-----------------------------------~~~~~vDGGl~~NNP~~~ 784 (1088)
.......|..|+||||+.|++|+|+++ ....|+|||+..|-|...
T Consensus 210 ~~~~~~~lA~AaRaSaSfP~aF~Pv~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vDGGvldN~Pl~p 289 (739)
T TIGR03607 210 DAANAPRLAFAARATASFPGAFPPSRLAEIDDVLARRFLPWGGRDAFLHPDFPDYAELGTTPRPRYVVDGGVLDNRPFAP 289 (739)
T ss_pred cccccHHHHHHHHHhcCCCcccCceehhhhhHHHHhccCCCCccccccccccccccccCCCccceEEeecccccCcchHH
Confidence 122247799999999999999999842 125799999999999999
Q ss_pred HHHHHHHhC
Q 001385 785 AIREAQLLW 793 (1088)
Q Consensus 785 Ai~Ea~~~~ 793 (1088)
++.+.....
T Consensus 290 al~~i~~~~ 298 (739)
T TIGR03607 290 ALEAIRARP 298 (739)
T ss_pred HHHHHHhcC
Confidence 999755433
No 55
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.59 E-value=3.8e-15 Score=183.42 Aligned_cols=221 Identities=16% Similarity=0.159 Sum_probs=172.6
Q ss_pred CCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCccccccCCCCCcEEEc
Q 001385 125 EPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPVLEKLYL 204 (1088)
Q Consensus 125 ~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 204 (1088)
.+...|+++++.++. +|..+. ++|+.|+|++|+ +.. +|..+ ..+|++|+|++|+|+.+|..+. .+|+.|+|
T Consensus 178 ~~~~~L~L~~~~Lts-LP~~Ip--~~L~~L~Ls~N~-Lts-LP~~l--~~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~L 248 (754)
T PRK15370 178 NNKTELRLKILGLTT-IPACIP--EQITTLILDNNE-LKS-LPENL--QGNIKTLYANSNQLTSIPATLP--DTIQEMEL 248 (754)
T ss_pred cCceEEEeCCCCcCc-CCcccc--cCCcEEEecCCC-CCc-CChhh--ccCCCEEECCCCccccCChhhh--ccccEEEC
Confidence 467889999998876 676553 589999999998 443 44443 2589999999999999997664 47999999
Q ss_pred cCCCCCCCchhhcCCCCCcEEEccCCcCcccchhccCCCCCCEEEeccCCCCCCcccccCCccccEEEecCCCCCCCccc
Q 001385 205 DNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVELRECVGLVELSLEHNRLVRPLLDFRAMAELKILRLFGNPLEFLPEI 284 (1088)
Q Consensus 205 ~~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~~~~~l~~l~~L~~L~Ls~N~l~~l~~l 284 (1088)
++|++..+|..+. .+|+.|++++|+|+.+|..+. ++|+.|+|++|+|+.++..+. ++|+.|++++|.++.+|..
T Consensus 249 s~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP~~ 322 (754)
T PRK15370 249 SINRITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLTALPET 322 (754)
T ss_pred cCCccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCccccCCcc
Confidence 9999999998775 589999999999999998764 589999999999998775543 5799999999999977642
Q ss_pred cCCCCCCeEEeeCCCCCCCccccchhhhhcCcCCccccccccchhhhHHhhhcccCCCCcchhHHHhhhhcCCCCcc-cc
Q 001385 285 LPLLKLRHLSLANIRIVADENLRSVNVQIEMENNSYFGASRHKLSAFFSLIFRFSSCHHPLLASALAKIMQDQENRV-VV 363 (1088)
Q Consensus 285 ~~l~~L~~L~L~~N~l~~~~~l~~l~~~~~l~~l~~l~l~~n~l~~~~~~l~~l~~l~~l~l~~~L~~i~~l~~N~l-~i 363 (1088)
. .++|+.|++++|.++.++.-- .++|+.|++++|++..+|..+. .+|.. +++.+|.+ .+
T Consensus 323 l-~~sL~~L~Ls~N~Lt~LP~~l-------~~sL~~L~Ls~N~L~~LP~~lp--~~L~~----------LdLs~N~Lt~L 382 (754)
T PRK15370 323 L-PPGLKTLEAGENALTSLPASL-------PPELQVLDVSKNQITVLPETLP--PTITT----------LDVSRNALTNL 382 (754)
T ss_pred c-cccceeccccCCccccCChhh-------cCcccEEECCCCCCCcCChhhc--CCcCE----------EECCCCcCCCC
Confidence 2 368999999999998754211 3578999999999887664432 23332 35667766 66
Q ss_pred ccccccccccceeeccCCh
Q 001385 364 GKDENAVRQLISMISSDNR 382 (1088)
Q Consensus 364 p~~~~~Lp~L~~L~Ls~N~ 382 (1088)
|..+. ..|+.|++++|.
T Consensus 383 P~~l~--~sL~~LdLs~N~ 399 (754)
T PRK15370 383 PENLP--AALQIMQASRNN 399 (754)
T ss_pred CHhHH--HHHHHHhhccCC
Confidence 66553 368889998887
No 56
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.58 E-value=1e-14 Score=178.41 Aligned_cols=212 Identities=23% Similarity=0.211 Sum_probs=158.9
Q ss_pred CCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCccccccCCCCCcEEEc
Q 001385 125 EPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPVLEKLYL 204 (1088)
Q Consensus 125 ~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 204 (1088)
..-..|+|++|.++. +|..+. ++|+.|++++|+ +.. +|. .+++|++|+|++|+|+.+|.. .++|+.|+|
T Consensus 201 ~~~~~LdLs~~~Lts-LP~~l~--~~L~~L~L~~N~-Lt~-LP~---lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~L 269 (788)
T PRK15387 201 NGNAVLNVGESGLTT-LPDCLP--AHITTLVIPDNN-LTS-LPA---LPPELRTLEVSGNQLTSLPVL---PPGLLELSI 269 (788)
T ss_pred CCCcEEEcCCCCCCc-CCcchh--cCCCEEEccCCc-CCC-CCC---CCCCCcEEEecCCccCcccCc---ccccceeec
Confidence 345688999999975 787775 489999999998 443 443 358999999999999999853 468999999
Q ss_pred cCCCCCCCchhhcCCCCCcEEEccCCcCcccchhccCCCCCCEEEeccCCCCCCcccccCCccccEEEecCCCCCCCccc
Q 001385 205 DNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVELRECVGLVELSLEHNRLVRPLLDFRAMAELKILRLFGNPLEFLPEI 284 (1088)
Q Consensus 205 ~~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~~~~~l~~l~~L~~L~Ls~N~l~~l~~l 284 (1088)
++|.++.+|..+ .+|+.|+|++|+++.+|.. +++|+.|+|++|++++++.. ..+|+.|++++|.|+.+|.+
T Consensus 270 s~N~L~~Lp~lp---~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N~L~~LP~l 340 (788)
T PRK15387 270 FSNPLTHLPALP---SGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQLTSLPTL 340 (788)
T ss_pred cCCchhhhhhch---hhcCEEECcCCcccccccc---ccccceeECCCCccccCCCC---cccccccccccCcccccccc
Confidence 999999888633 6788999999999999863 47899999999999987542 24678889999999877753
Q ss_pred cCCCCCCeEEeeCCCCCCCccccchhhhhcCcCCccccccccchhhhHHhhhcccCCCCcchhHHHhhhhcCCCCcc-cc
Q 001385 285 LPLLKLRHLSLANIRIVADENLRSVNVQIEMENNSYFGASRHKLSAFFSLIFRFSSCHHPLLASALAKIMQDQENRV-VV 363 (1088)
Q Consensus 285 ~~l~~L~~L~L~~N~l~~~~~l~~l~~~~~l~~l~~l~l~~n~l~~~~~~l~~l~~l~~l~l~~~L~~i~~l~~N~l-~i 363 (1088)
. .+|+.|+|++|+|+.++.+. .++..|++++|.++.+|... .+|.. +++++|.+ .+
T Consensus 341 p--~~Lq~LdLS~N~Ls~LP~lp--------~~L~~L~Ls~N~L~~LP~l~---~~L~~----------LdLs~N~Lt~L 397 (788)
T PRK15387 341 P--SGLQELSVSDNQLASLPTLP--------SELYKLWAYNNRLTSLPALP---SGLKE----------LIVSGNRLTSL 397 (788)
T ss_pred c--cccceEecCCCccCCCCCCC--------cccceehhhccccccCcccc---cccce----------EEecCCcccCC
Confidence 2 58999999999998865432 35667788888887765422 12221 34556655 44
Q ss_pred ccccccccccceeeccCCh
Q 001385 364 GKDENAVRQLISMISSDNR 382 (1088)
Q Consensus 364 p~~~~~Lp~L~~L~Ls~N~ 382 (1088)
|.. .++|+.|++++|.
T Consensus 398 P~l---~s~L~~LdLS~N~ 413 (788)
T PRK15387 398 PVL---PSELKELMVSGNR 413 (788)
T ss_pred CCc---ccCCCEEEccCCc
Confidence 432 3567777777776
No 57
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.58 E-value=7e-16 Score=162.22 Aligned_cols=177 Identities=18% Similarity=0.216 Sum_probs=159.1
Q ss_pred hhHHHhhhhcCCCCccccccccccccccceeeccCChhhhhhHHHHhccccCCchhh-HHHHHCCCcHHHHHHhccCChH
Q 001385 346 LASALAKIMQDQENRVVVGKDENAVRQLISMISSDNRHVVEQACSALSSLAGDVSVA-MLLMKCDIMQPIIAVLKSFAPE 424 (1088)
Q Consensus 346 l~~~L~~i~~l~~N~l~ip~~~~~Lp~L~~L~Ls~N~~v~~~a~~~L~~L~~~~~~~-~~l~~~~~~~~Ll~lL~~~~~~ 424 (1088)
..|.|.++....+-+.....--..+|-|.+|.-+.++++..+|||++++|.....++ ..+++.|+...|+.+|.+++..
T Consensus 221 ~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~ 300 (526)
T COG5064 221 ATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAK 300 (526)
T ss_pred hHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCcccc
Confidence 367777876665443222112257889999999999999999999999999999888 9999999999999999998888
Q ss_pred HHHHHHHHHHhhhccChHHHHHHhhhhhHHHHHHHhcCCChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcC
Q 001385 425 EVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVG 504 (1088)
Q Consensus 425 ~~~~~l~~L~~L~~~sd~~~~~v~~~g~lp~L~~Ll~~~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~ 504 (1088)
.+..+++.++++..++|...+.++.+|+++.+..|+.+....++++|+|++.|++.|+-++.+.|+++++.|+|++++.+
T Consensus 301 iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ 380 (526)
T COG5064 301 IQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSS 380 (526)
T ss_pred ccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHhhcc
Q 001385 505 PEPRVNKAAARALAILGE 522 (1088)
Q Consensus 505 ~~~~v~~~a~~aL~~l~~ 522 (1088)
.+..++|+||||+.+...
T Consensus 381 ae~k~kKEACWAisNats 398 (526)
T COG5064 381 AEYKIKKEACWAISNATS 398 (526)
T ss_pred HHHHHHHHHHHHHHhhhc
Confidence 999999999999988653
No 58
>KOG0513 consensus Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=99.57 E-value=5.7e-15 Score=171.13 Aligned_cols=278 Identities=21% Similarity=0.267 Sum_probs=192.6
Q ss_pred CCCCCCceEEEecCCCchHHHHHHHHHHHHHhcC--------CCCCcccce-EEecchHHHHHHHHh------cCCCCHH
Q 001385 534 QVPKQGLRILSMDGGGMKGLATVQILKEIEKGTG--------KRIHELFDL-VCGTSTGGMLAIALA------VKLMTLD 598 (1088)
Q Consensus 534 ~~~~~~~riLsLdGGG~RG~~~~~vL~~Le~~~~--------~~i~~~FDl-i~GTStG~iiA~~l~------~~~~s~~ 598 (1088)
+..+...++|+|||||+||+++...+..+|.++. .++.++||+ ++|+++||++++++- +..+.+.
T Consensus 29 ~~~~~~~~~lsld~gg~~gi~~~~s~~~~~~~l~~~~g~~~~~~~a~~fDv~~~g~~~~gl~~aml~a~~~~~~P~~~a~ 108 (503)
T KOG0513|consen 29 PSYGGLVTILSLDGGGSRGINQGVSLAYLELRLQNIDGDPSAARLADYFDVSIAGTNTGGLITAMLFAPNDCGRPRFGAT 108 (503)
T ss_pred ccccccceEEEEcCccceehhhhhhhcccHHHHHhccCChHhhHhhhccCceeeccCCchhhhhhhhccccccCcccccc
Confidence 3344678999999999999999999999987642 467899999 999999999999985 3456677
Q ss_pred HH-HHHHHHhhccccCCCCCCCchhhhHHHHHHHHhhcccccceeEeccCCCCH------HHHHHHHHHHhcCCCCCchh
Q 001385 599 QC-EEIYKNLGKLVFAEPFPKDNEAATWREKLDQIYKSSSQSFRVVVHGSKHSA------DQFERLLKEMCADEDGDLLI 671 (1088)
Q Consensus 599 e~-~~~y~~~~~~iF~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~------~~le~~Lk~~~~~~~g~~~~ 671 (1088)
++ ..++.+.++.+|............|. ..++....+.+|+. .+.....++.. |+..+
T Consensus 109 ~~~~~~~~~~~~~ll~~~~~~~~~~~~~~-----------~~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~----g~t~L 173 (503)
T KOG0513|consen 109 DILWKFNLEKAPKLLEKFDDPNFIKGDLN-----------LALRILVSGDKYSGAEVLLTKYEIADAREVL----GNTKL 173 (503)
T ss_pred chhhhhhhcCCCccccccccccccccccc-----------cceeeeecCccccceeecccccccchhhhhc----CCcee
Confidence 77 88888888888865421000000111 12233345566655 34444444444 66666
Q ss_pred ccccCCCCEEEEEEeeeccCCCccEEeecCCCCCCCCCCCccccCCCCccccCCCCCCCccccccccccCCCcchHHHHH
Q 001385 672 ESSVKNIPKVFTVSTLVNVMPAQPFIFRNYQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAI 751 (1088)
Q Consensus 672 ~~~~~~~~k~~vv~t~~d~~~~~~~lf~ny~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dA~ 751 (1088)
..++.+... .++..+.++...+|.+|+.|..-.+ ......++.+++.|
T Consensus 174 ~~tl~~~~~-~~~i~~ldl~~~~P~lf~~~~~~~~-------------------------------~~v~~~~~~~~~~c 221 (503)
T KOG0513|consen 174 HLTLTKENL-LVVIPCLDLKSLTPNLFSIYDALGT-------------------------------KIVPLLDFKAIDIC 221 (503)
T ss_pred eeeccCCCc-ceEEEeeccCcCCceeeeeeccccc-------------------------------cchhhhhhhhhhhh
Confidence 666665333 4556668999999999999874322 01123467899999
Q ss_pred HHh--cCCCCCCCC-ccC---CC------ceeeeCc-ccCCChHHHHHHHHHH---hCCC----------CCCCEEEEEC
Q 001385 752 RAS--SAAPYYLDD-FSD---DV------FRWQDGA-IVANNPTIFAIREAQL---LWPD----------TRIDCLVSIG 805 (1088)
Q Consensus 752 rAS--sAaP~yF~p-~~~---~~------~~~vDGG-l~~NNP~~~Ai~Ea~~---~~p~----------~~i~~vvSlG 805 (1088)
+++ +|+|++|+| +.. ++ ..++||| +.+|||+..|+.+... ..|. .+.-+|.|+|
T Consensus 222 ~~t~~sa~~~~f~~~~~~~~~Dg~~~~~~~~~~~~g~~~m~n~t~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~lv~~~G 301 (503)
T KOG0513|consen 222 IDTYGSAAPTIFPPILGFPSEDGQGIKTVCVLLDGGDIAMNNPTLHAITHVTANKRPFPPLLGLFRYRLRVDDNLVLSDG 301 (503)
T ss_pred hccccccCccccCcccccccccccccceeeEEecchhhhccCchHhhhhhhhhhcccCCcccccccccccccceEEEecC
Confidence 999 999999999 533 22 4689999 9999999999988642 2221 1233799999
Q ss_pred CCCCCCCC-----C---CCCccccccCc-------cchh--cccchHHHH----HHHHHHcCCCC-CCCEEEEcc
Q 001385 806 CGSVPTKT-----R---RGGWRYLDTGQ-------VLIE--SACSVDRAE----EALSTLLPMLP-EIQYYRFNP 858 (1088)
Q Consensus 806 TG~~~~~~-----~---~~~w~~~~~~~-------~li~--~~~~~d~~~----~~~~~~~~~~~-~~~YfR~np 858 (1088)
+|....+. . ...|+++.|.. ++.+ ...+.+.++ ++....+.... +.+|.|++-
T Consensus 302 ~G~~~~q~l~~~e~~~~~a~~~~f~w~~gtstg~~~~~~i~~~~s~d~v~~~y~~~k~~~F~~~r~~~~~~~Ie~ 376 (503)
T KOG0513|consen 302 GGIPIIQVLYWIEKRCGTAAWGYFDWFNGTSTGSTIMADIALDGSSDEVDRMYLQMKDVVFDGLRSEYNYVRIEC 376 (503)
T ss_pred CCChhHHHHHhHHHhcccccccccccccccCcCceeehhhhhcccHHHHHHHHHHHhHHhhhcccCCCCccchhh
Confidence 99862221 1 47899999976 5555 456677777 55666666555 489999983
No 59
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.56 E-value=9.1e-17 Score=189.60 Aligned_cols=209 Identities=21% Similarity=0.210 Sum_probs=128.7
Q ss_pred CCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCccccccCCCCCcEEEc
Q 001385 125 EPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPVLEKLYL 204 (1088)
Q Consensus 125 ~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 204 (1088)
++|+.|+.++|.+....+. ..-.+|++++++.|+ +. .+|..++.+.+|+.|+..+|+|+.+|..+..+.+|+.|.+
T Consensus 219 ~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~-l~-~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~ 294 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNN-LS-NLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSA 294 (1081)
T ss_pred cchheeeeccCcceeeccc--cccccceeeecchhh-hh-cchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHh
Confidence 4566666666666533221 122578888888887 33 3447777888888888888888888888888888888888
Q ss_pred cCCCCCCCchhhcCCCCCcEEEccCCcCcccchhccC-CC-CCCEEEeccCCCCCCcc-cccCCccccEEEecCCCCC--
Q 001385 205 DNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVELRE-CV-GLVELSLEHNRLVRPLL-DFRAMAELKILRLFGNPLE-- 279 (1088)
Q Consensus 205 ~~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~lp~~l~~-l~-~L~~L~Ls~N~l~~~~~-~l~~l~~L~~L~Ls~N~l~-- 279 (1088)
.+|.+..+|.....++.|++|+|..|+|.++|+.+-. +. .|+.|+.+.|.+...+. .=..++.|+.|.+.+|.++
T Consensus 295 ~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~ 374 (1081)
T KOG0618|consen 295 AYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDS 374 (1081)
T ss_pred hhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCccccc
Confidence 8888888887777788888888888888877764322 11 24455555555544431 1123445555666666665
Q ss_pred CCccccCCCCCCeEEeeCCCCCCCccccchhhhhcCcCCccccccccchhhhHHhhhcccCC
Q 001385 280 FLPEILPLLKLRHLSLANIRIVADENLRSVNVQIEMENNSYFGASRHKLSAFFSLIFRFSSC 341 (1088)
Q Consensus 280 ~l~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~~~~l~~l~~l~l~~n~l~~~~~~l~~l~~l 341 (1088)
.+|.+.++.+|+.|+|++|++..+++-. ..++..|+.|++++|++..+|..+.++..+
T Consensus 375 c~p~l~~~~hLKVLhLsyNrL~~fpas~----~~kle~LeeL~LSGNkL~~Lp~tva~~~~L 432 (1081)
T KOG0618|consen 375 CFPVLVNFKHLKVLHLSYNRLNSFPASK----LRKLEELEELNLSGNKLTTLPDTVANLGRL 432 (1081)
T ss_pred chhhhccccceeeeeecccccccCCHHH----HhchHHhHHHhcccchhhhhhHHHHhhhhh
Confidence 4555555566666666666665543332 123455555666666665555444444433
No 60
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.55 E-value=5e-16 Score=183.42 Aligned_cols=224 Identities=20% Similarity=0.196 Sum_probs=165.1
Q ss_pred ccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCccccccCCCCCcEEEccCCCCCCCchhhcCCCCCcEEEcc
Q 001385 149 TRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPVLEKLYLDNNKLSTLPPELGAMKNLKVLIVD 228 (1088)
Q Consensus 149 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~Ls 228 (1088)
++|+.|+.++|.+ ....+ ...-.+|+++++++|+++.+|+.+..+.+|+.|+..+|+++.+|..+..+++|+.|.+.
T Consensus 219 ~~l~~L~a~~n~l-~~~~~--~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~ 295 (1081)
T KOG0618|consen 219 PSLTALYADHNPL-TTLDV--HPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAA 295 (1081)
T ss_pred cchheeeeccCcc-eeecc--ccccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhh
Confidence 4566666666652 21111 11336788999999999999988888999999999999998888888888899999999
Q ss_pred CCcCcccchhccCCCCCCEEEeccCCCCCCccc-ccCCcc-ccEEEecCCCCCCCcccc--CCCCCCeEEeeCCCCCC--
Q 001385 229 NNMLVCVPVELRECVGLVELSLEHNRLVRPLLD-FRAMAE-LKILRLFGNPLEFLPEIL--PLLKLRHLSLANIRIVA-- 302 (1088)
Q Consensus 229 ~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~~~~~-l~~l~~-L~~L~Ls~N~l~~l~~l~--~l~~L~~L~L~~N~l~~-- 302 (1088)
+|.++.+|.....+++|++|+|..|+|..+++. |..+.. |+.|+.+.|++...|... .+..|+.|++.+|.++.
T Consensus 296 ~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c 375 (1081)
T KOG0618|consen 296 YNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSC 375 (1081)
T ss_pred hhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccc
Confidence 999998888888889999999999999888763 444433 788888888888777544 55689999999999987
Q ss_pred CccccchhhhhcCcCCccccccccchhhhHH-hhhcccCCCCc--------chhHHHhhh-----hcCCCCcc-cccccc
Q 001385 303 DENLRSVNVQIEMENNSYFGASRHKLSAFFS-LIFRFSSCHHP--------LLASALAKI-----MQDQENRV-VVGKDE 367 (1088)
Q Consensus 303 ~~~l~~l~~~~~l~~l~~l~l~~n~l~~~~~-~l~~l~~l~~l--------~l~~~L~~i-----~~l~~N~l-~ip~~~ 367 (1088)
++.+. +..+|+.|++++|.+..+|. .+.++..+..+ .++..+.++ +...+|++ .+| ++
T Consensus 376 ~p~l~------~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~ 448 (1081)
T KOG0618|consen 376 FPVLV------NFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-EL 448 (1081)
T ss_pred hhhhc------cccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hh
Confidence 33333 58899999999999998884 44444444433 222223322 33447777 445 77
Q ss_pred ccccccceeeccCCh
Q 001385 368 NAVRQLISMISSDNR 382 (1088)
Q Consensus 368 ~~Lp~L~~L~Ls~N~ 382 (1088)
..+++|+.+|++.|.
T Consensus 449 ~~l~qL~~lDlS~N~ 463 (1081)
T KOG0618|consen 449 AQLPQLKVLDLSCNN 463 (1081)
T ss_pred hhcCcceEEecccch
Confidence 788888888888886
No 61
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.53 E-value=1.1e-13 Score=182.15 Aligned_cols=33 Identities=39% Similarity=0.404 Sum_probs=19.0
Q ss_pred ccccEEEecCCCC-CCCc-cccCCCCCCeEEeeCC
Q 001385 266 AELKILRLFGNPL-EFLP-EILPLLKLRHLSLANI 298 (1088)
Q Consensus 266 ~~L~~L~Ls~N~l-~~l~-~l~~l~~L~~L~L~~N 298 (1088)
++|+.|+|++|.. ..+| .+.++++|+.|+|++|
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C 812 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENC 812 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCCCCCCEEECCCC
Confidence 4566666666543 2344 4566666666666654
No 62
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.49 E-value=2.8e-14 Score=163.03 Aligned_cols=177 Identities=19% Similarity=0.266 Sum_probs=159.8
Q ss_pred chhHHHhhhhcCCCCccccccccccccccceeeccCChhhhhhHHHHhccccCCchhh-HHHHHCCCcHHHHHHhccCCh
Q 001385 345 LLASALAKIMQDQENRVVVGKDENAVRQLISMISSDNRHVVEQACSALSSLAGDVSVA-MLLMKCDIMQPIIAVLKSFAP 423 (1088)
Q Consensus 345 ~l~~~L~~i~~l~~N~l~ip~~~~~Lp~L~~L~Ls~N~~v~~~a~~~L~~L~~~~~~~-~~l~~~~~~~~Ll~lL~~~~~ 423 (1088)
.+.|.|.+++....-...+......+|.|..|.-+.++.|..++||++++|..+..+. +.+++.|+++.++.+|.....
T Consensus 214 n~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~ 293 (514)
T KOG0166|consen 214 NATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSP 293 (514)
T ss_pred HHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCc
Confidence 4688899987666422222223357899999999999999999999999999888888 999999999999999999988
Q ss_pred HHHHHHHHHHHhhhccChHHHHHHhhhhhHHHHHHHhc-CCChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhh
Q 001385 424 EEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCA-HKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLT 502 (1088)
Q Consensus 424 ~~~~~~l~~L~~L~~~sd~~~~~v~~~g~lp~L~~Ll~-~~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll 502 (1088)
.++..+++++++++.++|..++.++.+|++|.|..|+. +....+++.|+|+++||+.|+..+.+.|++++++|.|++++
T Consensus 294 ~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l 373 (514)
T KOG0166|consen 294 KVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLL 373 (514)
T ss_pred ccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHH
Confidence 88999999999999999999999999999999999999 66667999999999999999999999999999999999999
Q ss_pred cCCchhHHHHHHHHHHhhc
Q 001385 503 VGPEPRVNKAAARALAILG 521 (1088)
Q Consensus 503 ~~~~~~v~~~a~~aL~~l~ 521 (1088)
...+.+++|||+||++++.
T Consensus 374 ~~~ef~~rKEAawaIsN~t 392 (514)
T KOG0166|consen 374 QTAEFDIRKEAAWAISNLT 392 (514)
T ss_pred hccchHHHHHHHHHHHhhc
Confidence 9999999999999999875
No 63
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.48 E-value=3.7e-15 Score=167.62 Aligned_cols=176 Identities=24% Similarity=0.270 Sum_probs=158.5
Q ss_pred CCCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCccccccCCCCCcEEE
Q 001385 124 REPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPVLEKLY 203 (1088)
Q Consensus 124 l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~ 203 (1088)
+..-...||+.|++.. +|..+..+..|+.|.|+.|. ...+|..++++..|.+|||+.|+++.+|..++.|+ |+.|-
T Consensus 74 ltdt~~aDlsrNR~~e-lp~~~~~f~~Le~liLy~n~--~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSE-LPEEACAFVSLESLILYHNC--IRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLI 149 (722)
T ss_pred ccchhhhhcccccccc-CchHHHHHHHHHHHHHHhcc--ceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEE
Confidence 3344567899999865 88888999999999999997 56678888999999999999999999999988876 89999
Q ss_pred ccCCCCCCCchhhcCCCCCcEEEccCCcCcccchhccCCCCCCEEEeccCCCCCCcccccCCccccEEEecCCCCCCCc-
Q 001385 204 LDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVELRECVGLVELSLEHNRLVRPLLDFRAMAELKILRLFGNPLEFLP- 282 (1088)
Q Consensus 204 L~~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~~~~~l~~l~~L~~L~Ls~N~l~~l~- 282 (1088)
+++|+++.+|..++.+.+|..||.+.|.+..+|..++.+.+|+.|++..|++..+++++..| .|..||+++|++..+|
T Consensus 150 ~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNkis~iPv 228 (722)
T KOG0532|consen 150 VSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNKISYLPV 228 (722)
T ss_pred EecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCceeecch
Confidence 99999999999999999999999999999999999999999999999999999999888744 7899999999999888
Q ss_pred cccCCCCCCeEEeeCCCCCCCc
Q 001385 283 EILPLLKLRHLSLANIRIVADE 304 (1088)
Q Consensus 283 ~l~~l~~L~~L~L~~N~l~~~~ 304 (1088)
.|.+|+.|++|-|.+|++..++
T Consensus 229 ~fr~m~~Lq~l~LenNPLqSPP 250 (722)
T KOG0532|consen 229 DFRKMRHLQVLQLENNPLQSPP 250 (722)
T ss_pred hhhhhhhheeeeeccCCCCCCh
Confidence 7999999999999999999864
No 64
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.46 E-value=3e-15 Score=161.68 Aligned_cols=131 Identities=21% Similarity=0.214 Sum_probs=96.2
Q ss_pred CCCceEEeccCCCCCcccccccccccchhhcCCCCCccEEEeeCCCCCCCCccccccCccccEEeCcC-CCCCCCCcccc
Q 001385 91 PEDTVVVELAPQEEGDVATDAANVGVEMRVVKRREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLST-SGPGNNMGSGF 169 (1088)
Q Consensus 91 ~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~~~~~ 169 (1088)
|.+.+.+.+..+.+ ..+...+|+.+++|+.|||++|+|+.+-|++|.++..|..|-+.+ |+ +.......
T Consensus 66 P~~tveirLdqN~I---------~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~Nk-I~~l~k~~ 135 (498)
T KOG4237|consen 66 PPETVEIRLDQNQI---------SSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNK-ITDLPKGA 135 (498)
T ss_pred CCcceEEEeccCCc---------ccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCc-hhhhhhhH
Confidence 34445555544332 234557888888888888888888888888888888887776665 66 67777778
Q ss_pred ccCCCCccEEEccCCCCCCcc-ccccCCCCCcEEEccCCCCCCCch-hhcCCCCCcEEEccCCc
Q 001385 170 CDHWKTVTAVSLCGLGLSALP-VDLTRLPVLEKLYLDNNKLSTLPP-ELGAMKNLKVLIVDNNM 231 (1088)
Q Consensus 170 ~~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~~N~l~~lp~-~l~~l~~L~~L~Ls~N~ 231 (1088)
|++|..|+.|.+.-|++.-++ +.+..|++|..|.+.+|.+..++. .|..+..++.+.+..|.
T Consensus 136 F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 136 FGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence 888888888888888888555 457788888888888888887775 66777777777776665
No 65
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.44 E-value=5.3e-15 Score=159.83 Aligned_cols=256 Identities=18% Similarity=0.169 Sum_probs=193.7
Q ss_pred CCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccC-CCCCCccc-cccCCCCCcEE
Q 001385 125 EPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCG-LGLSALPV-DLTRLPVLEKL 202 (1088)
Q Consensus 125 ~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~-n~l~~lp~-~l~~l~~L~~L 202 (1088)
+.-.+++|..|.|+...+.+|+.+++||.|||++|. +..+.|..|..+++|..|-+-+ |+|+.+|+ .|.+|..|+.|
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~-Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNN-ISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL 145 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccc-hhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence 356789999999999888899999999999999999 8999999999999988877666 99999997 57899999999
Q ss_pred EccCCCCCCCc-hhhcCCCCCcEEEccCCcCcccch-hccCCCCCCEEEeccCCCCCC-------------cccccCCcc
Q 001385 203 YLDNNKLSTLP-PELGAMKNLKVLIVDNNMLVCVPV-ELRECVGLVELSLEHNRLVRP-------------LLDFRAMAE 267 (1088)
Q Consensus 203 ~L~~N~l~~lp-~~l~~l~~L~~L~Ls~N~l~~lp~-~l~~l~~L~~L~Ls~N~l~~~-------------~~~l~~l~~ 267 (1088)
.+.-|++.-++ ..|..|++|..|.+.+|.+..++. .+..+..++.+.+..|.+... +-.++....
T Consensus 146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc 225 (498)
T KOG4237|consen 146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC 225 (498)
T ss_pred hcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence 99999999544 678999999999999999998887 788899999999888873211 001221111
Q ss_pred ccEEEe--------------------------cCCCCCCCc--cccCCCCCCeEEeeCCCCCCCccccchhhhhcCcCCc
Q 001385 268 LKILRL--------------------------FGNPLEFLP--EILPLLKLRHLSLANIRIVADENLRSVNVQIEMENNS 319 (1088)
Q Consensus 268 L~~L~L--------------------------s~N~l~~l~--~l~~l~~L~~L~L~~N~l~~~~~l~~l~~~~~l~~l~ 319 (1088)
..-..+ ..+....-| .|..+++|++|+|++|+|+....-. +-+...++
T Consensus 226 ~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~a----Fe~~a~l~ 301 (498)
T KOG4237|consen 226 VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGA----FEGAAELQ 301 (498)
T ss_pred cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhh----hcchhhhh
Confidence 111111 111222233 3778999999999999999752211 22477888
Q ss_pred cccccccchhhhHHh-hhcccCCCCcchhHHHhhhhcCCCCcc--ccccccccccccceeeccCChhhhhhHHHHhccc
Q 001385 320 YFGASRHKLSAFFSL-IFRFSSCHHPLLASALAKIMQDQENRV--VVGKDENAVRQLISMISSDNRHVVEQACSALSSL 395 (1088)
Q Consensus 320 ~l~l~~n~l~~~~~~-l~~l~~l~~l~l~~~L~~i~~l~~N~l--~ip~~~~~Lp~L~~L~Ls~N~~v~~~a~~~L~~L 395 (1088)
.|.+..|++..+-.. +..++.|.. +++.+|++ ..|..+..+..|..|++-.|+..+..-+.-|+..
T Consensus 302 eL~L~~N~l~~v~~~~f~~ls~L~t----------L~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~W 370 (498)
T KOG4237|consen 302 ELYLTRNKLEFVSSGMFQGLSGLKT----------LSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEW 370 (498)
T ss_pred hhhcCcchHHHHHHHhhhcccccee----------eeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHH
Confidence 899999999877653 445666654 56778888 5566778889999999999997776554444433
No 66
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.43 E-value=1.6e-12 Score=171.26 Aligned_cols=254 Identities=17% Similarity=0.154 Sum_probs=180.5
Q ss_pred ccchhhcCCCCCccEEEeeCCCC------CCCCccccccCc-cccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCC
Q 001385 115 GVEMRVVKRREPLRAVVLTKGVG------SGHLSDGIGVLT-RLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLS 187 (1088)
Q Consensus 115 ~~~~~~~~~l~~L~~L~Ls~n~i------~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~ 187 (1088)
.+...+|..+.+|+.|.+.++.+ ...+|..|..++ +|+.|++.+|. ...+|..| .+.+|+.|+|++|++.
T Consensus 548 ~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~--l~~lP~~f-~~~~L~~L~L~~s~l~ 624 (1153)
T PLN03210 548 HIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYP--LRCMPSNF-RPENLVKLQMQGSKLE 624 (1153)
T ss_pred eecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCC--CCCCCCcC-CccCCcEEECcCcccc
Confidence 35557899999999999976642 234677777764 69999999987 45566666 6789999999999999
Q ss_pred CccccccCCCCCcEEEccCCC-CCCCchhhcCCCCCcEEEccCCc-CcccchhccCCCCCCEEEeccCC-CCCCcccccC
Q 001385 188 ALPVDLTRLPVLEKLYLDNNK-LSTLPPELGAMKNLKVLIVDNNM-LVCVPVELRECVGLVELSLEHNR-LVRPLLDFRA 264 (1088)
Q Consensus 188 ~lp~~l~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~Ls~N~-l~~~~~~l~~ 264 (1088)
.++..+..+++|+.|+|++|. +..+| .+..+++|+.|+|++|. +..+|..+.++++|+.|++++|. +..++..+ +
T Consensus 625 ~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~ 702 (1153)
T PLN03210 625 KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-N 702 (1153)
T ss_pred ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-C
Confidence 999999999999999999865 56777 58889999999999875 56899999999999999999864 55554444 7
Q ss_pred CccccEEEecCCC-CCCCccccCCCCCCeEEeeCCCCCCCccccchhhhhcCcCCccccccccchhhhHHhhhcccCCCC
Q 001385 265 MAELKILRLFGNP-LEFLPEILPLLKLRHLSLANIRIVADENLRSVNVQIEMENNSYFGASRHKLSAFFSLIFRFSSCHH 343 (1088)
Q Consensus 265 l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~~~~l~~l~~l~l~~n~l~~~~~~l~~l~~l~~ 343 (1088)
+++|+.|+|++|. +..+|.+ ..+|+.|+|++|.+..++... .+++|..|++..+....+...+..+..+..
T Consensus 703 l~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i~~lP~~~------~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~ 774 (1153)
T PLN03210 703 LKSLYRLNLSGCSRLKSFPDI--STNISWLDLDETAIEEFPSNL------RLENLDELILCEMKSEKLWERVQPLTPLMT 774 (1153)
T ss_pred CCCCCEEeCCCCCCccccccc--cCCcCeeecCCCccccccccc------cccccccccccccchhhccccccccchhhh
Confidence 8999999999885 3355543 468999999999988754322 356666666655332221111111100000
Q ss_pred cchhHHHhhhhcCCCCcc--ccccccccccccceeeccCChh
Q 001385 344 PLLASALAKIMQDQENRV--VVGKDENAVRQLISMISSDNRH 383 (1088)
Q Consensus 344 l~l~~~L~~i~~l~~N~l--~ip~~~~~Lp~L~~L~Ls~N~~ 383 (1088)
.....|.. +++.+|.. .+|.+++.+++|+.|++++|..
T Consensus 775 -~~~~sL~~-L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~ 814 (1153)
T PLN03210 775 -MLSPSLTR-LFLSDIPSLVELPSSIQNLHKLEHLEIENCIN 814 (1153)
T ss_pred -hccccchh-eeCCCCCCccccChhhhCCCCCCEEECCCCCC
Confidence 00001111 24444433 6788888888888888887653
No 67
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.41 E-value=8e-14 Score=158.69 Aligned_cols=212 Identities=25% Similarity=0.276 Sum_probs=131.3
Q ss_pred hhcCCCCCccEEEeeCCCCCC------CCccccccCccccEEeCcCCCCCCCCccccccCCCC---ccEEEccCCCCC--
Q 001385 119 RVVKRREPLRAVVLTKGVGSG------HLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKT---VTAVSLCGLGLS-- 187 (1088)
Q Consensus 119 ~~~~~l~~L~~L~Ls~n~i~~------~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~---L~~L~Ls~n~l~-- 187 (1088)
..+...++|+.|+++++.+.+ .++..+..+++|+.|+|++|. +....+..+..+.+ |++|++++|+++
T Consensus 45 ~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~ 123 (319)
T cd00116 45 SALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNA-LGPDGCGVLESLLRSSSLQELKLNNNGLGDR 123 (319)
T ss_pred HHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCC-CChhHHHHHHHHhccCcccEEEeeCCccchH
Confidence 445566777788877776652 133456667788888888777 33333334434433 888888887776
Q ss_pred ---CccccccCC-CCCcEEEccCCCCC-----CCchhhcCCCCCcEEEccCCcCc-----ccchhccCCCCCCEEEeccC
Q 001385 188 ---ALPVDLTRL-PVLEKLYLDNNKLS-----TLPPELGAMKNLKVLIVDNNMLV-----CVPVELRECVGLVELSLEHN 253 (1088)
Q Consensus 188 ---~lp~~l~~l-~~L~~L~L~~N~l~-----~lp~~l~~l~~L~~L~Ls~N~l~-----~lp~~l~~l~~L~~L~Ls~N 253 (1088)
.+...+..+ ++|+.|+|++|.++ .++..+..+.+|++|++++|.++ .++..+..+++|++|+|++|
T Consensus 124 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n 203 (319)
T cd00116 124 GLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNN 203 (319)
T ss_pred HHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCC
Confidence 233345556 77788888888776 23445566677888888887776 34445556677888888887
Q ss_pred CCCCCc-----ccccCCccccEEEecCCCCCC--Ccccc-----CCCCCCeEEeeCCCCCCCccccchhhhhcCcCCccc
Q 001385 254 RLVRPL-----LDFRAMAELKILRLFGNPLEF--LPEIL-----PLLKLRHLSLANIRIVADENLRSVNVQIEMENNSYF 321 (1088)
Q Consensus 254 ~l~~~~-----~~l~~l~~L~~L~Ls~N~l~~--l~~l~-----~l~~L~~L~L~~N~l~~~~~l~~l~~~~~l~~l~~l 321 (1088)
.+++.. ..+..+++|++|++++|.++. +..+. ..++|++|++++|.++......-......+++|+++
T Consensus 204 ~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l 283 (319)
T cd00116 204 GLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLEL 283 (319)
T ss_pred ccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEE
Confidence 776432 235567778888888877762 11211 236778888888877642111111112235677777
Q ss_pred cccccchhhh
Q 001385 322 GASRHKLSAF 331 (1088)
Q Consensus 322 ~l~~n~l~~~ 331 (1088)
+++.|.++..
T Consensus 284 ~l~~N~l~~~ 293 (319)
T cd00116 284 DLRGNKFGEE 293 (319)
T ss_pred ECCCCCCcHH
Confidence 7777776653
No 68
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.40 E-value=1.5e-13 Score=156.42 Aligned_cols=209 Identities=20% Similarity=0.127 Sum_probs=156.5
Q ss_pred hhhcCCCCCccEEEeeCCCCCCCCccccccCcc---ccEEeCcCCCCCCC----CccccccCC-CCccEEEccCCCCC--
Q 001385 118 MRVVKRREPLRAVVLTKGVGSGHLSDGIGVLTR---LMRSDLSTSGPGNN----MGSGFCDHW-KTVTAVSLCGLGLS-- 187 (1088)
Q Consensus 118 ~~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~---L~~L~Ls~N~l~~~----~~~~~~~~l-~~L~~L~Ls~n~l~-- 187 (1088)
...+..+++|+.|++++|.+.+..+..+..+.+ |+.|++++|+ ... .+...+..+ ++|+.|+|++|.++
T Consensus 74 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~-~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~ 152 (319)
T cd00116 74 LQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNG-LGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGA 152 (319)
T ss_pred HHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCc-cchHHHHHHHHHHHhCCCCceEEEcCCCcCCch
Confidence 356777999999999999998666666666655 9999999998 432 123345566 89999999999998
Q ss_pred ---CccccccCCCCCcEEEccCCCCC-----CCchhhcCCCCCcEEEccCCcCc-----ccchhccCCCCCCEEEeccCC
Q 001385 188 ---ALPVDLTRLPVLEKLYLDNNKLS-----TLPPELGAMKNLKVLIVDNNMLV-----CVPVELRECVGLVELSLEHNR 254 (1088)
Q Consensus 188 ---~lp~~l~~l~~L~~L~L~~N~l~-----~lp~~l~~l~~L~~L~Ls~N~l~-----~lp~~l~~l~~L~~L~Ls~N~ 254 (1088)
.++..+..+.+|++|+|++|.++ .++..+..+++|+.|++++|.++ .+...+..+++|++|++++|.
T Consensus 153 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~ 232 (319)
T cd00116 153 SCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN 232 (319)
T ss_pred HHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc
Confidence 44556778889999999999998 34455667789999999999987 355567788999999999999
Q ss_pred CCCCc-ccc-----cCCccccEEEecCCCCCC------CccccCCCCCCeEEeeCCCCCCCccccchhhhhcC-cCCccc
Q 001385 255 LVRPL-LDF-----RAMAELKILRLFGNPLEF------LPEILPLLKLRHLSLANIRIVADENLRSVNVQIEM-ENNSYF 321 (1088)
Q Consensus 255 l~~~~-~~l-----~~l~~L~~L~Ls~N~l~~------l~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~~~~l-~~l~~l 321 (1088)
+++.. ..+ ...+.|+.|++++|.++. ...+..+++|+.|++++|.++..+......+.... +.++.+
T Consensus 233 l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~ 312 (319)
T cd00116 233 LTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESL 312 (319)
T ss_pred CchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhc
Confidence 98632 122 134799999999999961 12355668999999999999975322211112223 567777
Q ss_pred cccccc
Q 001385 322 GASRHK 327 (1088)
Q Consensus 322 ~l~~n~ 327 (1088)
++..|.
T Consensus 313 ~~~~~~ 318 (319)
T cd00116 313 WVKDDS 318 (319)
T ss_pred ccCCCC
Confidence 777665
No 69
>KOG0513 consensus Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=99.36 E-value=8.1e-13 Score=153.40 Aligned_cols=212 Identities=24% Similarity=0.311 Sum_probs=157.9
Q ss_pred CCCCCCceEEEecCCCchHHHHHHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhcCCCCHHHHHHHHHHhhccccC
Q 001385 534 QVPKQGLRILSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVFA 613 (1088)
Q Consensus 534 ~~~~~~~riLsLdGGG~RG~~~~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~~~~s~~e~~~~y~~~~~~iF~ 613 (1088)
...+....++..+|||++ ...+|..+|+..+...-.+||++.|||+||++++.+... .+.+++...|..+...+|.
T Consensus 288 ~~~~~~~~lv~~~G~G~~---~~q~l~~~e~~~~~a~~~~f~w~~gtstg~~~~~~i~~~-~s~d~v~~~y~~~k~~~F~ 363 (503)
T KOG0513|consen 288 YRLRVDDNLVLSDGGGIP---IIQVLYWIEKRCGTAAWGYFDWFNGTSTGSTIMADIALD-GSSDEVDRMYLQMKDVVFD 363 (503)
T ss_pred ccccccceEEEecCCCCh---hHHHHHhHHHhcccccccccccccccCcCceeehhhhhc-ccHHHHHHHHHHHhHHhhh
Confidence 334456789999999999 889999999998877789999999999999999999765 5999999999999888886
Q ss_pred CCCCCCchhhhHHHHHHHHhhcccccceeEeccCCCCHHHHHHHHHHHhcCCCCCchhccccCCCCEEEEEEeeeccCCC
Q 001385 614 EPFPKDNEAATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMPA 693 (1088)
Q Consensus 614 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~Lk~~~~~~~g~~~~~~~~~~~~k~~vv~t~~d~~~~ 693 (1088)
.- .+.|+...++.+++..+++ .... -.+.++..+.....+....
T Consensus 364 ~~------------------------------r~~~~~~~Ie~~~~~~~G~----~~~~--di~~~~~nl~~~~~~~~~~ 407 (503)
T KOG0513|consen 364 GL------------------------------RSEYNYVRIECAIDRLFGD----APSM--DIDGIRLNLTGLLVDITGE 407 (503)
T ss_pred cc------------------------------cCCCCccchhhhhhcccCc----cccc--cCCcchhhhhhhhccccHH
Confidence 42 3457788889888888853 1111 1233344455454566777
Q ss_pred ccEEeecCCCCCCCCCCCccccCCCCccccCCCCCCCccccccccccCCCcchHHHHHHHhcCCCCCCCCccCCCceeee
Q 001385 694 QPFIFRNYQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLDDFSDDVFRWQD 773 (1088)
Q Consensus 694 ~~~lf~ny~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dA~rASsAaP~yF~p~~~~~~~~vD 773 (1088)
+...+|||..+...+. +..++ . .+ -.+........+|++.|.|+++|.+|++. +..|+|
T Consensus 408 ~l~~~rn~~~~i~~~~---~~~~~--------~-sn------de~~~~~~~~l~we~~rrss~a~~~f~~~---~~~~~d 466 (503)
T KOG0513|consen 408 ELLMARNYRHNINGGK---PRSEE--------V-SN------DEALEEPAMQLVWEAKRRSSRAPPTFPPS---EGKFID 466 (503)
T ss_pred HHHHhhcccccccccc---ccccc--------c-cc------chhhhhHHHHHHHHHHHhccCCCCccccc---ccceee
Confidence 8899999998765432 00000 0 00 11222234678999999999999999886 577999
Q ss_pred CcccCCChHHHHHHHHHHhCC----CCCCCEEEEECC
Q 001385 774 GAIVANNPTIFAIREAQLLWP----DTRIDCLVSIGC 806 (1088)
Q Consensus 774 GGl~~NNP~~~Ai~Ea~~~~p----~~~i~~vvSlGT 806 (1088)
||..+|||....++|.+.+-. -....|+||+||
T Consensus 467 ~~~~~~n~~ld~~t~~~~~~~~~~~~~~~~~~~s~gt 503 (503)
T KOG0513|consen 467 GGLIANNPALDLMTDIHTYNKDLNKRNTMTIVVSAGT 503 (503)
T ss_pred cCccCCCcchhhhHHHHHHHhhhhhhcccceEEeccC
Confidence 999999999999999986543 234569999998
No 70
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.29 E-value=1.6e-13 Score=154.55 Aligned_cols=175 Identities=26% Similarity=0.327 Sum_probs=150.5
Q ss_pred hhcCCCCCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCccccccCCCC
Q 001385 119 RVVKRREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPV 198 (1088)
Q Consensus 119 ~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~ 198 (1088)
..++.+..|+.|.|..|.|.. +|..+.++..|.+|||+.|+ ...+|..++.|+ |+.|-+++|+++.+|..++.+.+
T Consensus 92 ~~~~~f~~Le~liLy~n~~r~-ip~~i~~L~~lt~l~ls~Nq--lS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~t 167 (722)
T KOG0532|consen 92 EEACAFVSLESLILYHNCIRT-IPEAICNLEALTFLDLSSNQ--LSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPT 167 (722)
T ss_pred hHHHHHHHHHHHHHHhcccee-cchhhhhhhHHHHhhhccch--hhcCChhhhcCc-ceeEEEecCccccCCcccccchh
Confidence 445556678889999998865 88999999999999999998 344566565554 99999999999999999999999
Q ss_pred CcEEEccCCCCCCCchhhcCCCCCcEEEccCCcCcccchhccCCCCCCEEEeccCCCCCCcccccCCccccEEEecCCCC
Q 001385 199 LEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVELRECVGLVELSLEHNRLVRPLLDFRAMAELKILRLFGNPL 278 (1088)
Q Consensus 199 L~~L~L~~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~~~~~l~~l~~L~~L~Ls~N~l 278 (1088)
|..||.+.|.+..+|..++.+.+|+.|++..|++..+|..+..| .|..||++.|++..++..|.+|+.|++|-|.+|.|
T Consensus 168 l~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 168 LAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPL 246 (722)
T ss_pred HHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCceeecchhhhhhhhheeeeeccCCC
Confidence 99999999999999999999999999999999999999999955 58999999999999998999999999999999999
Q ss_pred CCCcc-cc---CCCCCCeEEeeCC
Q 001385 279 EFLPE-IL---PLLKLRHLSLANI 298 (1088)
Q Consensus 279 ~~l~~-l~---~l~~L~~L~L~~N 298 (1088)
..+|. ++ ...=.++|+..-+
T Consensus 247 qSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 247 QSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred CCChHHHHhccceeeeeeecchhc
Confidence 98883 32 2333456665555
No 71
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.28 E-value=5.1e-13 Score=139.34 Aligned_cols=208 Identities=19% Similarity=0.168 Sum_probs=142.4
Q ss_pred hhcCCCCCccEEEeeCCC--------CCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCc-
Q 001385 119 RVVKRREPLRAVVLTKGV--------GSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSAL- 189 (1088)
Q Consensus 119 ~~~~~l~~L~~L~Ls~n~--------i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~l- 189 (1088)
..+..+.+|..|-++... +...+|-.+.-+++|..+.++.|. ...+.+....-+.|+++...+.-++..
T Consensus 176 hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~--~~~i~~~~~~kptl~t~~v~~s~~~~~~ 253 (490)
T KOG1259|consen 176 HVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALS--TENIVDIELLKPTLQTICVHNTTIQDVP 253 (490)
T ss_pred HHHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccc--hhheeceeecCchhheeeeecccccccc
Confidence 455667788888877632 122244445667788888888875 333333333446777777766554421
Q ss_pred ---cc--------------------cccCCCCCcEEEccCCCCCCCchhhcCCCCCcEEEccCCcCcccchhccCCCCCC
Q 001385 190 ---PV--------------------DLTRLPVLEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVELRECVGLV 246 (1088)
Q Consensus 190 ---p~--------------------~l~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~ 246 (1088)
|. .+..+..|++|||++|.|+.+.++..-+++++.|++++|.|..+.. +..+++|+
T Consensus 254 ~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~ 332 (490)
T KOG1259|consen 254 SLLPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQ 332 (490)
T ss_pred cccchhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccce
Confidence 11 1223456788888888888887778778888888888888877653 77788888
Q ss_pred EEEeccCCCCCCcccccCCccccEEEecCCCCCCCccccCCCCCCeEEeeCCCCCCCccccchhhhhcCcCCcccccccc
Q 001385 247 ELSLEHNRLVRPLLDFRAMAELKILRLFGNPLEFLPEILPLLKLRHLSLANIRIVADENLRSVNVQIEMENNSYFGASRH 326 (1088)
Q Consensus 247 ~L~Ls~N~l~~~~~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~~~~l~~l~~l~l~~n 326 (1088)
+|||++|.++.....-.++-+++.|.|+.|.|+.+..+.++-+|..||+++|+|..++.+.... +++-|+.+.+.+|
T Consensus 333 ~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG---~LPCLE~l~L~~N 409 (490)
T KOG1259|consen 333 LLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIG---NLPCLETLRLTGN 409 (490)
T ss_pred EeecccchhHhhhhhHhhhcCEeeeehhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccc---cccHHHHHhhcCC
Confidence 8888888887665444556677888888888888888888888888888888887765554422 4667777777777
Q ss_pred chhhhH
Q 001385 327 KLSAFF 332 (1088)
Q Consensus 327 ~l~~~~ 332 (1088)
.+...+
T Consensus 410 Pl~~~v 415 (490)
T KOG1259|consen 410 PLAGSV 415 (490)
T ss_pred Cccccc
Confidence 776644
No 72
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=1.8e-12 Score=142.49 Aligned_cols=206 Identities=19% Similarity=0.158 Sum_probs=120.7
Q ss_pred cCCCCCccEEEeeCCCCCCCCc-cccccCccccEEeCcCCCCCCCC-ccccccCCCCccEEEccCCCCCCcccc--ccCC
Q 001385 121 VKRREPLRAVVLTKGVGSGHLS-DGIGVLTRLMRSDLSTSGPGNNM-GSGFCDHWKTVTAVSLCGLGLSALPVD--LTRL 196 (1088)
Q Consensus 121 ~~~l~~L~~L~Ls~n~i~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~-~~~~~~~l~~L~~L~Ls~n~l~~lp~~--l~~l 196 (1088)
-+++.+|+.+.|.++.+....- .....|++++.|||+.|-+..+. +......|++|+.|+|+.|++...-.+ -..+
T Consensus 117 Qsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 117 QSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 3456667777777666543111 24556777777777777522111 233455677777777777776632221 1245
Q ss_pred CCCcEEEccCCCCC--CCchhhcCCCCCcEEEccCCc-CcccchhccCCCCCCEEEeccCCCCCCc--ccccCCccccEE
Q 001385 197 PVLEKLYLDNNKLS--TLPPELGAMKNLKVLIVDNNM-LVCVPVELRECVGLVELSLEHNRLVRPL--LDFRAMAELKIL 271 (1088)
Q Consensus 197 ~~L~~L~L~~N~l~--~lp~~l~~l~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~Ls~N~l~~~~--~~l~~l~~L~~L 271 (1088)
++|+.|.|+.|.++ .+...+..+++|+.|+|..|. +..-......+..|++|||++|++.... ...+.++.|+.|
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 66777777777776 343444566777777777773 2211122334556777777777776655 346667777777
Q ss_pred EecCCCCCCCc--c------ccCCCCCCeEEeeCCCCCCCccccchhhhhcCcCCccccccccchh
Q 001385 272 RLFGNPLEFLP--E------ILPLLKLRHLSLANIRIVADENLRSVNVQIEMENNSYFGASRHKLS 329 (1088)
Q Consensus 272 ~Ls~N~l~~l~--~------l~~l~~L~~L~L~~N~l~~~~~l~~l~~~~~l~~l~~l~l~~n~l~ 329 (1088)
+++.|.+..+. . ...+++|++|++..|+|..+..+..+. .+.++..+....|.+.
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~---~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLR---TLENLKHLRITLNYLN 339 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhh---ccchhhhhhccccccc
Confidence 77777766222 1 235567777777777777666555543 2455555555555544
No 73
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.19 E-value=1.4e-11 Score=144.62 Aligned_cols=196 Identities=27% Similarity=0.277 Sum_probs=134.9
Q ss_pred EEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCC-CccEEEccCCCCCCccccccCCCCCcEEEccCC
Q 001385 129 AVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWK-TVTAVSLCGLGLSALPVDLTRLPVLEKLYLDNN 207 (1088)
Q Consensus 129 ~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~-~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~N 207 (1088)
.|++..|.+... ...+..++.++.|++.+|. ...++.....+. +|+.|++++|.+..+|..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~--i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNN--ITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccC-chhhhcccceeEEecCCcc--cccCccccccchhhcccccccccchhhhhhhhhccccccccccCCc
Confidence 566666665332 2334555677777777776 333444444553 777888888887777767777778888888888
Q ss_pred CCCCCchhhcCCCCCcEEEccCCcCcccchhccCCCCCCEEEeccCCCCCCcccccCCccccEEEecCCCCCC-CccccC
Q 001385 208 KLSTLPPELGAMKNLKVLIVDNNMLVCVPVELRECVGLVELSLEHNRLVRPLLDFRAMAELKILRLFGNPLEF-LPEILP 286 (1088)
Q Consensus 208 ~l~~lp~~l~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~~~~~l~~l~~L~~L~Ls~N~l~~-l~~l~~ 286 (1088)
+++.+|.....+++|+.|++++|++..+|..+..+..|++|.+++|.+...+..+.++.++..|.+.+|++.. +..+..
T Consensus 174 ~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~ 253 (394)
T COG4886 174 DLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGN 253 (394)
T ss_pred hhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhcc
Confidence 8777776666777777888888887777776666666777777777655555566777777777777777775 335666
Q ss_pred CCCCCeEEeeCCCCCCCccccchhhhhcCcCCccccccccchhhhHH
Q 001385 287 LLKLRHLSLANIRIVADENLRSVNVQIEMENNSYFGASRHKLSAFFS 333 (1088)
Q Consensus 287 l~~L~~L~L~~N~l~~~~~l~~l~~~~~l~~l~~l~l~~n~l~~~~~ 333 (1088)
+++|++|++++|.++..+.+.. +.+++.++++.|.+...++
T Consensus 254 l~~l~~L~~s~n~i~~i~~~~~------~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 254 LSNLETLDLSNNQISSISSLGS------LTNLRELDLSGNSLSNALP 294 (394)
T ss_pred ccccceeccccccccccccccc------cCccCEEeccCccccccch
Confidence 7777788888887777655443 6677777777777766554
No 74
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=3.1e-12 Score=140.66 Aligned_cols=183 Identities=21% Similarity=0.211 Sum_probs=85.7
Q ss_pred ccCccccEEeCcCCCCCCCCcc--ccccCCCCccEEEccCCCCCC---ccccccCCCCCcEEEccCCCCCCCchh--hcC
Q 001385 146 GVLTRLMRSDLSTSGPGNNMGS--GFCDHWKTVTAVSLCGLGLSA---LPVDLTRLPVLEKLYLDNNKLSTLPPE--LGA 218 (1088)
Q Consensus 146 ~~l~~L~~L~Ls~N~l~~~~~~--~~~~~l~~L~~L~Ls~n~l~~---lp~~l~~l~~L~~L~L~~N~l~~lp~~--l~~ 218 (1088)
.++.+|+...|.++. ....+ .....|++++.|||++|-+.. +-.-+..|++|+.|+|+.|++...-++ -..
T Consensus 118 sn~kkL~~IsLdn~~--V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~ 195 (505)
T KOG3207|consen 118 SNLKKLREISLDNYR--VEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL 195 (505)
T ss_pred hhHHhhhheeecCcc--ccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhh
Confidence 344555555555554 11111 234455555566666555552 222334555556666665555411111 123
Q ss_pred CCCCcEEEccCCcCc--ccchhccCCCCCCEEEeccCCCCC-CcccccCCccccEEEecCCCCCCCc---cccCCCCCCe
Q 001385 219 MKNLKVLIVDNNMLV--CVPVELRECVGLVELSLEHNRLVR-PLLDFRAMAELKILRLFGNPLEFLP---EILPLLKLRH 292 (1088)
Q Consensus 219 l~~L~~L~Ls~N~l~--~lp~~l~~l~~L~~L~Ls~N~l~~-~~~~l~~l~~L~~L~Ls~N~l~~l~---~l~~l~~L~~ 292 (1088)
+++|+.|.|+.|.++ .+-..+..+++|+.|+|..|.... ......-++.|+.|+|++|++-..+ ....++.|+.
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQ 275 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhh
Confidence 455555555555555 333334445555555555553111 1112334455555566555554222 3445555555
Q ss_pred EEeeCCCCCCC--ccccchhhhhcCcCCccccccccchhh
Q 001385 293 LSLANIRIVAD--ENLRSVNVQIEMENNSYFGASRHKLSA 330 (1088)
Q Consensus 293 L~L~~N~l~~~--~~l~~l~~~~~l~~l~~l~l~~n~l~~ 330 (1088)
|+++.+.+.++ ++...+.....+++|++|++..|++..
T Consensus 276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~ 315 (505)
T KOG3207|consen 276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRD 315 (505)
T ss_pred hhccccCcchhcCCCccchhhhcccccceeeecccCcccc
Confidence 55555555542 222222223335555555555555533
No 75
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.19 E-value=1.3e-11 Score=144.97 Aligned_cols=182 Identities=25% Similarity=0.281 Sum_probs=160.3
Q ss_pred hhcCCCCCccEEEeeCCCCCCCCccccccCc-cccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCccccccCCC
Q 001385 119 RVVKRREPLRAVVLTKGVGSGHLSDGIGVLT-RLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLP 197 (1088)
Q Consensus 119 ~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~ 197 (1088)
..+..++.++.|++.+|.++. ++.....+. +|+.|++++|. ...++..+..+++|+.|++++|+++.+|.....++
T Consensus 110 ~~~~~~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~--i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~ 186 (394)
T COG4886 110 SELLELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNK--IESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLS 186 (394)
T ss_pred hhhhcccceeEEecCCccccc-Cccccccchhhcccccccccc--hhhhhhhhhccccccccccCCchhhhhhhhhhhhh
Confidence 444555789999999999976 666667774 99999999998 33444667899999999999999999998877999
Q ss_pred CCcEEEccCCCCCCCchhhcCCCCCcEEEccCCcCcccchhccCCCCCCEEEeccCCCCCCcccccCCccccEEEecCCC
Q 001385 198 VLEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVELRECVGLVELSLEHNRLVRPLLDFRAMAELKILRLFGNP 277 (1088)
Q Consensus 198 ~L~~L~L~~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~~~~~l~~l~~L~~L~Ls~N~ 277 (1088)
+|+.|++++|++..+|..+..+..|++|.+++|.+..++..+.++.++..|.+.+|++...+..+..+++|+.|++++|.
T Consensus 187 ~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~ 266 (394)
T COG4886 187 NLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQ 266 (394)
T ss_pred hhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceecccccc
Confidence 99999999999999998877778899999999987778888999999999999999998876678889999999999999
Q ss_pred CCCCccccCCCCCCeEEeeCCCCCCC
Q 001385 278 LEFLPEILPLLKLRHLSLANIRIVAD 303 (1088)
Q Consensus 278 l~~l~~l~~l~~L~~L~L~~N~l~~~ 303 (1088)
++.++.+..+.+|+.|++++|.+...
T Consensus 267 i~~i~~~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 267 ISSISSLGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred ccccccccccCccCEEeccCcccccc
Confidence 99888899999999999999999864
No 76
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.18 E-value=4.2e-12 Score=132.57 Aligned_cols=136 Identities=22% Similarity=0.288 Sum_probs=119.4
Q ss_pred cccCCCCccEEEccCCCCCCccccccCCCCCcEEEccCCCCCCCchhhcCCCCCcEEEccCCcCcccchhccCCCCCCEE
Q 001385 169 FCDHWKTVTAVSLCGLGLSALPVDLTRLPVLEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVELRECVGLVEL 248 (1088)
Q Consensus 169 ~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L 248 (1088)
.+..++.|++||||+|.|+.+.++..-++.++.|++++|.|..+.. +..+++|+.|||++|.++++...-.++-+++.|
T Consensus 279 ~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 279 SADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTL 357 (490)
T ss_pred ecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeee
Confidence 3445688999999999999999999999999999999999997764 889999999999999999887666788899999
Q ss_pred EeccCCCCCCcccccCCccccEEEecCCCCCC---CccccCCCCCCeEEeeCCCCCCCccc
Q 001385 249 SLEHNRLVRPLLDFRAMAELKILRLFGNPLEF---LPEILPLLKLRHLSLANIRIVADENL 306 (1088)
Q Consensus 249 ~Ls~N~l~~~~~~l~~l~~L~~L~Ls~N~l~~---l~~l~~l~~L~~L~L~~N~l~~~~~l 306 (1088)
.|+.|.|..+ ..+.++-+|..||+++|+|.. +..+++++-|++|.|.+|++......
T Consensus 358 ~La~N~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdY 417 (490)
T KOG1259|consen 358 KLAQNKIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVDY 417 (490)
T ss_pred ehhhhhHhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccchH
Confidence 9999998654 467888999999999999984 45788999999999999999886444
No 77
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.14 E-value=8.6e-12 Score=133.98 Aligned_cols=235 Identities=18% Similarity=0.170 Sum_probs=171.7
Q ss_pred CCCCCCceEEeccCCCCCcccccccccccchhhcCCCCCccEEEeeCCCCCCC----Cc-------cccccCccccEEeC
Q 001385 88 LPVPEDTVVVELAPQEEGDVATDAANVGVEMRVVKRREPLRAVVLTKGVGSGH----LS-------DGIGVLTRLMRSDL 156 (1088)
Q Consensus 88 lp~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~----~p-------~~l~~l~~L~~L~L 156 (1088)
+.....+..++++++.. |.+..+.-.+.+.+.++|+..++++- ++|. +| +.+..+++|++|||
T Consensus 26 ~~~~~s~~~l~lsgnt~-----G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldL 99 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTF-----GTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDL 99 (382)
T ss_pred hcccCceEEEeccCCch-----hHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeec
Confidence 34455677888888775 45556666688889999999999875 4443 34 33456789999999
Q ss_pred cCCCCCCCCcc---ccccCCCCccEEEccCCCCCCc--------------cccccCCCCCcEEEccCCCCCCCc-----h
Q 001385 157 STSGPGNNMGS---GFCDHWKTVTAVSLCGLGLSAL--------------PVDLTRLPVLEKLYLDNNKLSTLP-----P 214 (1088)
Q Consensus 157 s~N~l~~~~~~---~~~~~l~~L~~L~Ls~n~l~~l--------------p~~l~~l~~L~~L~L~~N~l~~lp-----~ 214 (1088)
|+|-+....++ ..+..+..|++|.|.+|.+... ...+..-++|+++...+|++..-+ .
T Consensus 100 SDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~ 179 (382)
T KOG1909|consen 100 SDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAE 179 (382)
T ss_pred cccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHH
Confidence 99984333322 3456788999999999998822 223445678999999999988433 4
Q ss_pred hhcCCCCCcEEEccCCcCc-----ccchhccCCCCCCEEEeccCCCCCCc-----ccccCCccccEEEecCCCCCC----
Q 001385 215 ELGAMKNLKVLIVDNNMLV-----CVPVELRECVGLVELSLEHNRLVRPL-----LDFRAMAELKILRLFGNPLEF---- 280 (1088)
Q Consensus 215 ~l~~l~~L~~L~Ls~N~l~-----~lp~~l~~l~~L~~L~Ls~N~l~~~~-----~~l~~l~~L~~L~Ls~N~l~~---- 280 (1088)
.|...+.|+.+.+..|.|. .+...+..+++|+.|||.+|-++... ..+..+++|+.|++++|.++.
T Consensus 180 ~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~ 259 (382)
T KOG1909|consen 180 AFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAI 259 (382)
T ss_pred HHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHH
Confidence 5677889999999999886 34457788999999999999987543 347888899999999998872
Q ss_pred --Ccccc-CCCCCCeEEeeCCCCCCCccccchhhhhcCcCCccccccccch
Q 001385 281 --LPEIL-PLLKLRHLSLANIRIVADENLRSVNVQIEMENNSYFGASRHKL 328 (1088)
Q Consensus 281 --l~~l~-~l~~L~~L~L~~N~l~~~~~l~~l~~~~~l~~l~~l~l~~n~l 328 (1088)
+..+. ..++|+.|.|.+|.|+....+.-..+....+.|..|+++.|.+
T Consensus 260 a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 260 AFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 12222 4689999999999998753333222233477888889999887
No 78
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.13 E-value=2.4e-11 Score=123.41 Aligned_cols=103 Identities=29% Similarity=0.421 Sum_probs=24.5
Q ss_pred CccEEEccCCCCCCcccccc-CCCCCcEEEccCCCCCCCchhhcCCCCCcEEEccCCcCcccchhc-cCCCCCCEEEecc
Q 001385 175 TVTAVSLCGLGLSALPVDLT-RLPVLEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVEL-RECVGLVELSLEH 252 (1088)
Q Consensus 175 ~L~~L~Ls~n~l~~lp~~l~-~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~lp~~l-~~l~~L~~L~Ls~ 252 (1088)
++++|+|.+|.|+.+. .++ .+.+|+.|+|++|.|+.+. .+..+++|++|++++|+|+.+...+ ..+++|++|+|++
T Consensus 20 ~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~ 97 (175)
T PF14580_consen 20 KLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSN 97 (175)
T ss_dssp -----------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TT
T ss_pred cccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcC
Confidence 4455555555555442 233 3445555555555555443 3444555555555555555544333 2345555555555
Q ss_pred CCCCCCc--ccccCCccccEEEecCCCCC
Q 001385 253 NRLVRPL--LDFRAMAELKILRLFGNPLE 279 (1088)
Q Consensus 253 N~l~~~~--~~l~~l~~L~~L~Ls~N~l~ 279 (1088)
|+|.... ..+..+++|+.|+|.+|++.
T Consensus 98 N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 98 NKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp S---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 5554432 12344444444444444444
No 79
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.11 E-value=3.9e-11 Score=121.90 Aligned_cols=140 Identities=25% Similarity=0.294 Sum_probs=52.2
Q ss_pred ccCCCCCCccccccCCCCCcEEEccCCCCCCCchhhc-CCCCCcEEEccCCcCcccchhccCCCCCCEEEeccCCCCCCc
Q 001385 181 LCGLGLSALPVDLTRLPVLEKLYLDNNKLSTLPPELG-AMKNLKVLIVDNNMLVCVPVELRECVGLVELSLEHNRLVRPL 259 (1088)
Q Consensus 181 Ls~n~l~~lp~~l~~l~~L~~L~L~~N~l~~lp~~l~-~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~~~ 259 (1088)
|..+.|...+. +.+..++++|+|++|.|+.+. .++ .+.+|+.|+|++|.|+.+. .+..+++|+.|++++|.|+.+.
T Consensus 4 lt~~~i~~~~~-~~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~ 80 (175)
T PF14580_consen 4 LTANMIEQIAQ-YNNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSIS 80 (175)
T ss_dssp ----------------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-C
T ss_pred ccccccccccc-ccccccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccc
Confidence 44555666653 445667899999999998774 565 6889999999999999885 6888999999999999998876
Q ss_pred ccc-cCCccccEEEecCCCCCCC---ccccCCCCCCeEEeeCCCCCCCccccchhhhhcCcCCcccccc
Q 001385 260 LDF-RAMAELKILRLFGNPLEFL---PEILPLLKLRHLSLANIRIVADENLRSVNVQIEMENNSYFGAS 324 (1088)
Q Consensus 260 ~~l-~~l~~L~~L~Ls~N~l~~l---~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~~~~l~~l~~l~l~ 324 (1088)
+.+ ..+++|+.|+|++|+|..+ ..+..+++|+.|+|.+|+++..+.... .+...+++|+.||-.
T Consensus 81 ~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~-~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 81 EGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRL-FVIYKLPSLKVLDGQ 148 (175)
T ss_dssp HHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHH-HHHHH-TT-SEETTE
T ss_pred cchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHH-HHHHHcChhheeCCE
Confidence 544 4688999999999998744 456788999999999999886544432 223347777776643
No 80
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.95 E-value=1.9e-10 Score=123.82 Aligned_cols=237 Identities=16% Similarity=0.153 Sum_probs=167.4
Q ss_pred hhcCCCCCccEEEeeCCCCCCC----CccccccCccccEEeCcCCCCCCC---Cccc-------cccCCCCccEEEccCC
Q 001385 119 RVVKRREPLRAVVLTKGVGSGH----LSDGIGVLTRLMRSDLSTSGPGNN---MGSG-------FCDHWKTVTAVSLCGL 184 (1088)
Q Consensus 119 ~~~~~l~~L~~L~Ls~n~i~~~----~p~~l~~l~~L~~L~Ls~N~l~~~---~~~~-------~~~~l~~L~~L~Ls~n 184 (1088)
..+..+..++.|+|++|.|... +...+.+.++|+..++++-- ... .+|. .+..+++|++||||+|
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~f-tGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN 102 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMF-TGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN 102 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhh-cCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence 5667788999999999998643 44567778899999998753 211 1222 3445679999999999
Q ss_pred CCC-----CccccccCCCCCcEEEccCCCCCCCc--------------hhhcCCCCCcEEEccCCcCc-----ccchhcc
Q 001385 185 GLS-----ALPVDLTRLPVLEKLYLDNNKLSTLP--------------PELGAMKNLKVLIVDNNMLV-----CVPVELR 240 (1088)
Q Consensus 185 ~l~-----~lp~~l~~l~~L~~L~L~~N~l~~lp--------------~~l~~l~~L~~L~Ls~N~l~-----~lp~~l~ 240 (1088)
-+. .+-.-+.++..|++|+|.+|.+...- .-+..-++|+++....|++. .+...+.
T Consensus 103 A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~ 182 (382)
T KOG1909|consen 103 AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQ 182 (382)
T ss_pred ccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHH
Confidence 887 22234677899999999999987221 12345678999999999987 3444667
Q ss_pred CCCCCCEEEeccCCCCCCc-----ccccCCccccEEEecCCCCCC-----Cc-cccCCCCCCeEEeeCCCCCCCccccch
Q 001385 241 ECVGLVELSLEHNRLVRPL-----LDFRAMAELKILRLFGNPLEF-----LP-EILPLLKLRHLSLANIRIVADENLRSV 309 (1088)
Q Consensus 241 ~l~~L~~L~Ls~N~l~~~~-----~~l~~l~~L~~L~Ls~N~l~~-----l~-~l~~l~~L~~L~L~~N~l~~~~~l~~l 309 (1088)
..+.|+.+.+..|.|.... ..|..+++|++|||..|-++. +. .+..+++|+.|+++++.+..-....-+
T Consensus 183 ~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~ 262 (382)
T KOG1909|consen 183 SHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFV 262 (382)
T ss_pred hccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHH
Confidence 7789999999999885432 358889999999999998872 11 456777899999999988875443333
Q ss_pred hhhhc-CcCCccccccccchhhhHHhhhcccCCCCcchhHHHhhhhcCCCCccccccccccccccceeeccCChh
Q 001385 310 NVQIE-MENNSYFGASRHKLSAFFSLIFRFSSCHHPLLASALAKIMQDQENRVVVGKDENAVRQLISMISSDNRH 383 (1088)
Q Consensus 310 ~~~~~-l~~l~~l~l~~n~l~~~~~~l~~l~~l~~l~l~~~L~~i~~l~~N~l~ip~~~~~Lp~L~~L~Ls~N~~ 383 (1088)
..+.. .++|+.+.+.+|.++.--.. .+...+...|.|..|++++|..
T Consensus 263 ~al~~~~p~L~vl~l~gNeIt~da~~---------------------------~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 263 DALKESAPSLEVLELAGNEITRDAAL---------------------------ALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHhccCCCCceeccCcchhHHHHHH---------------------------HHHHHHhcchhhHHhcCCcccc
Confidence 22222 56777788888776542111 1112234588999999999983
No 81
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.83 E-value=3.7e-10 Score=133.13 Aligned_cols=197 Identities=23% Similarity=0.305 Sum_probs=142.4
Q ss_pred CCCCCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCccccccCCCCCcE
Q 001385 122 KRREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPVLEK 201 (1088)
Q Consensus 122 ~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~ 201 (1088)
..+..++.+++..|.+.. +-..+..+.+|..|++.+|+ +.. +...+..+++|++|+|++|.|+.+. .+..++.|+.
T Consensus 69 ~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~-i~~-i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~ 144 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNK-IEK-IENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKE 144 (414)
T ss_pred HHhHhHHhhccchhhhhh-hhcccccccceeeeeccccc-hhh-cccchhhhhcchheecccccccccc-chhhccchhh
Confidence 456667777788887754 33447778888888888887 333 2333567888888999999888774 5667777888
Q ss_pred EEccCCCCCCCchhhcCCCCCcEEEccCCcCcccchh-ccCCCCCCEEEeccCCCCCCcccccCCccccEEEecCCCCCC
Q 001385 202 LYLDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVE-LRECVGLVELSLEHNRLVRPLLDFRAMAELKILRLFGNPLEF 280 (1088)
Q Consensus 202 L~L~~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~lp~~-l~~l~~L~~L~Ls~N~l~~~~~~l~~l~~L~~L~Ls~N~l~~ 280 (1088)
|++++|.|+.+. .+..+.+|+.+++++|.+..+... +..+.+|+.+++.+|.+.... .+..+..+..+++..|.++.
T Consensus 145 L~l~~N~i~~~~-~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~-~~~~~~~l~~~~l~~n~i~~ 222 (414)
T KOG0531|consen 145 LNLSGNLISDIS-GLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIE-GLDLLKKLVLLSLLDNKISK 222 (414)
T ss_pred heeccCcchhcc-CCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhccc-chHHHHHHHHhhccccccee
Confidence 889888888765 466688888888888888877543 577788888888888876542 34445555666888888886
Q ss_pred CccccCCCC--CCeEEeeCCCCCCC-ccccchhhhhcCcCCccccccccchhh
Q 001385 281 LPEILPLLK--LRHLSLANIRIVAD-ENLRSVNVQIEMENNSYFGASRHKLSA 330 (1088)
Q Consensus 281 l~~l~~l~~--L~~L~L~~N~l~~~-~~l~~l~~~~~l~~l~~l~l~~n~l~~ 330 (1088)
+..+..+.. |+.+++++|.+... ..+.. +.++..+++..|.+..
T Consensus 223 ~~~l~~~~~~~L~~l~l~~n~i~~~~~~~~~------~~~l~~l~~~~n~~~~ 269 (414)
T KOG0531|consen 223 LEGLNELVMLHLRELYLSGNRISRSPEGLEN------LKNLPVLDLSSNRISN 269 (414)
T ss_pred ccCcccchhHHHHHHhcccCccccccccccc------cccccccchhhccccc
Confidence 665555555 88888888888875 44443 6667777777777655
No 82
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.80 E-value=2e-08 Score=132.17 Aligned_cols=154 Identities=20% Similarity=0.152 Sum_probs=141.9
Q ss_pred ccccccceeeccCChhhhhhHHHHhccccCCchhh-HHHHHCCCcHHHHHHhccCChHHHHHHHHHHHhhhccChHHHHH
Q 001385 368 NAVRQLISMISSDNRHVVEQACSALSSLAGDVSVA-MLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQK 446 (1088)
Q Consensus 368 ~~Lp~L~~L~Ls~N~~v~~~a~~~L~~L~~~~~~~-~~l~~~~~~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd~~~~~ 446 (1088)
+..+.|..|.-..+..++++++++|.+++.+..+. ..+.+.|+++.|+.+|.+.....+..++.+|.+++..++...+.
T Consensus 404 daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~a 483 (2102)
T PLN03200 404 EAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWA 483 (2102)
T ss_pred cchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 45677888888888999999999999999877766 99999999999999999988888899999999999888888999
Q ss_pred HhhhhhHHHHHHHhcCCChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcCCchhHHHHHHHHHHhhc
Q 001385 447 MLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILG 521 (1088)
Q Consensus 447 v~~~g~lp~L~~Ll~~~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~ 521 (1088)
+++.|++|.|+.|+.+.+..+|+.|+|+++|++.+.++.+..+.++|+++.|+.++.+.+.++++.|+|+|..+.
T Consensus 484 IieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi 558 (2102)
T PLN03200 484 ITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLV 558 (2102)
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999987777777778899999999999999999999999999994
No 83
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.80 E-value=5.4e-10 Score=131.73 Aligned_cols=178 Identities=22% Similarity=0.214 Sum_probs=92.6
Q ss_pred cCCCCCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCccccccCCCCCc
Q 001385 121 VKRREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPVLE 200 (1088)
Q Consensus 121 ~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~ 200 (1088)
+..+.+|+.|++.+|.|... ...+..+++|++|+|++|. +.... .+..+..|+.|++++|.|+.+. .+..+.+|+
T Consensus 91 l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~-I~~i~--~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~ 165 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNK-ITKLE--GLSTLTLLKELNLSGNLISDIS-GLESLKSLK 165 (414)
T ss_pred cccccceeeeeccccchhhc-ccchhhhhcchheeccccc-ccccc--chhhccchhhheeccCcchhcc-CCccchhhh
Confidence 55556666666666665542 2224555666666666665 22221 2234445666666666666553 333455666
Q ss_pred EEEccCCCCCCCchh-hcCCCCCcEEEccCCcCcccchhccCCCCCCEEEeccCCCCCCcccccCCc--cccEEEecCCC
Q 001385 201 KLYLDNNKLSTLPPE-LGAMKNLKVLIVDNNMLVCVPVELRECVGLVELSLEHNRLVRPLLDFRAMA--ELKILRLFGNP 277 (1088)
Q Consensus 201 ~L~L~~N~l~~lp~~-l~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~~~~~l~~l~--~L~~L~Ls~N~ 277 (1088)
.|++++|++..+... +..+.+|+.+++.+|.+..+. .+..+..+..+++..|.++.+. .+..+. +|+.+++++|+
T Consensus 166 ~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~-~~~~~~~l~~~~l~~n~i~~~~-~l~~~~~~~L~~l~l~~n~ 243 (414)
T KOG0531|consen 166 LLDLSYNRIVDIENDELSELISLEELDLGGNSIREIE-GLDLLKKLVLLSLLDNKISKLE-GLNELVMLHLRELYLSGNR 243 (414)
T ss_pred cccCCcchhhhhhhhhhhhccchHHHhccCCchhccc-chHHHHHHHHhhcccccceecc-CcccchhHHHHHHhcccCc
Confidence 666666666644432 355566666666666655332 2333334444455555554332 122222 25666666666
Q ss_pred CCCC-ccccCCCCCCeEEeeCCCCCCCcc
Q 001385 278 LEFL-PEILPLLKLRHLSLANIRIVADEN 305 (1088)
Q Consensus 278 l~~l-~~l~~l~~L~~L~L~~N~l~~~~~ 305 (1088)
+..+ ..+..+..+..|++.+|.+.....
T Consensus 244 i~~~~~~~~~~~~l~~l~~~~n~~~~~~~ 272 (414)
T KOG0531|consen 244 ISRSPEGLENLKNLPVLDLSSNRISNLEG 272 (414)
T ss_pred cccccccccccccccccchhhcccccccc
Confidence 6644 455555666666666666555433
No 84
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.77 E-value=9.3e-11 Score=135.50 Aligned_cols=130 Identities=22% Similarity=0.180 Sum_probs=84.2
Q ss_pred CCcEEEccCCCCCCCchhhcCCCCCcEEEccCCcCcccchhccCCCCCCEEEeccCCCCCCcc-cccCCccccEEEecCC
Q 001385 198 VLEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVELRECVGLVELSLEHNRLVRPLL-DFRAMAELKILRLFGN 276 (1088)
Q Consensus 198 ~L~~L~L~~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~~~~-~l~~l~~L~~L~Ls~N 276 (1088)
.|.+.+.++|.+..+..++.-++.|+.|+|++|+++.+. .+..|+.|++|||++|.+..++. ....+ +|..|+|++|
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN 242 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNN 242 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhh-hheeeeeccc
Confidence 466666677777666666666777777777777776554 56667777777777777766542 22233 3777777777
Q ss_pred CCCCCccccCCCCCCeEEeeCCCCCCCccccchhhhhcCcCCccccccccchhhhH
Q 001385 277 PLEFLPEILPLLKLRHLSLANIRIVADENLRSVNVQIEMENNSYFGASRHKLSAFF 332 (1088)
Q Consensus 277 ~l~~l~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~~~~l~~l~~l~l~~n~l~~~~ 332 (1088)
.++.+-.+.++.+|+.|||++|-|.+...+..|- .|..|..|.+.+|.+..-|
T Consensus 243 ~l~tL~gie~LksL~~LDlsyNll~~hseL~pLw---sLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 243 ALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLW---SLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred HHHhhhhHHhhhhhhccchhHhhhhcchhhhHHH---HHHHHHHHhhcCCccccCH
Confidence 7776666777777777777777776654444322 3555666677777665544
No 85
>PLN03150 hypothetical protein; Provisional
Probab=98.65 E-value=4.4e-08 Score=120.85 Aligned_cols=105 Identities=21% Similarity=0.328 Sum_probs=94.0
Q ss_pred cccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCC-CccccccCCCCCcEEEccCCCCC-CCchhhcCCCCCcEEEc
Q 001385 150 RLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLS-ALPVDLTRLPVLEKLYLDNNKLS-TLPPELGAMKNLKVLIV 227 (1088)
Q Consensus 150 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~L 227 (1088)
.++.|+|++|. +.+.+|..+..+++|+.|+|++|.++ .+|..+..+++|+.|+|++|+++ .+|..++++++|+.|+|
T Consensus 419 ~v~~L~L~~n~-L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQG-LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCC-ccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 48889999998 67788888999999999999999998 88989999999999999999998 88999999999999999
Q ss_pred cCCcCc-ccchhccCC-CCCCEEEeccCCC
Q 001385 228 DNNMLV-CVPVELREC-VGLVELSLEHNRL 255 (1088)
Q Consensus 228 s~N~l~-~lp~~l~~l-~~L~~L~Ls~N~l 255 (1088)
++|.++ .+|..+..+ .++..+++.+|..
T Consensus 498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 498 NGNSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred cCCcccccCChHHhhccccCceEEecCCcc
Confidence 999998 889888653 5677888888864
No 86
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.65 E-value=2.9e-08 Score=125.00 Aligned_cols=153 Identities=22% Similarity=0.235 Sum_probs=104.4
Q ss_pred CCCCCccEEEeeCCCCCCCCccccccCccccEEeCcCCCC-CCCCccccccCCCCccEEEccCCC-CCCccccccCCCCC
Q 001385 122 KRREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGP-GNNMGSGFCDHWKTVTAVSLCGLG-LSALPVDLTRLPVL 199 (1088)
Q Consensus 122 ~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l-~~~~~~~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L 199 (1088)
.+...++.+.+-+|.+.. ++... .+++|+.|-+..|.. +.......|..++.|++|||++|. +.++|..+++|-+|
T Consensus 520 ~~~~~~rr~s~~~~~~~~-~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~L 597 (889)
T KOG4658|consen 520 KSWNSVRRMSLMNNKIEH-IAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHL 597 (889)
T ss_pred cchhheeEEEEeccchhh-ccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhh
Confidence 344566777777776643 33322 334788888888752 344445567788888888888765 66888888888888
Q ss_pred cEEEccCCCCCCCchhhcCCCCCcEEEccCCcCc-ccchhccCCCCCCEEEeccCCCCCCc---ccccCCccccEEEecC
Q 001385 200 EKLYLDNNKLSTLPPELGAMKNLKVLIVDNNMLV-CVPVELRECVGLVELSLEHNRLVRPL---LDFRAMAELKILRLFG 275 (1088)
Q Consensus 200 ~~L~L~~N~l~~lp~~l~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~Ls~N~l~~~~---~~l~~l~~L~~L~Ls~ 275 (1088)
++|+|+++.++.+|.++.+|+.|.+|++..+.-. .+|.....|++|++|.+......... .++.++.+|+.|....
T Consensus 598 ryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 598 RYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI 677 (889)
T ss_pred hcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence 8888888888888888888888888888877643 45555566888888887655422111 2455566666665543
Q ss_pred C
Q 001385 276 N 276 (1088)
Q Consensus 276 N 276 (1088)
.
T Consensus 678 ~ 678 (889)
T KOG4658|consen 678 S 678 (889)
T ss_pred c
Confidence 3
No 87
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.64 E-value=1.5e-07 Score=124.17 Aligned_cols=161 Identities=13% Similarity=0.191 Sum_probs=137.8
Q ss_pred ccccceeeccCChhh-hhhHHHHhccccCCchhhHHHHHCCCcHHHHHHhccCChHHHHHHHHHHHhhhccChHHHHHHh
Q 001385 370 VRQLISMISSDNRHV-VEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKML 448 (1088)
Q Consensus 370 Lp~L~~L~Ls~N~~v-~~~a~~~L~~L~~~~~~~~~l~~~~~~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd~~~~~v~ 448 (1088)
.+.|..|.-+.++.. .+.+..+|..+.........+.+.|+++.|+.++...+.+.+..+..+|.+++-+++...+.+.
T Consensus 364 ~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi 443 (2102)
T PLN03200 364 EQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALG 443 (2102)
T ss_pred HHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 356666666666553 5556667777666555557778899999999999999999999999999999988888899999
Q ss_pred hhhhHHHHHHHhcCCChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcCCchhHHHHHHHHHHhhcchH-HHH
Q 001385 449 TKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGENE-SLR 527 (1088)
Q Consensus 449 ~~g~lp~L~~Ll~~~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~-~~r 527 (1088)
+.|++|.|++++.+.+..+|+.|+++++|++.+++++++.++++|++|+|+.++.+.+.+++++|+|++.+++.++ +.+
T Consensus 444 ~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir 523 (2102)
T PLN03200 444 GREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIR 523 (2102)
T ss_pred HcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHH
Confidence 9999999999999999999999999999999999888888889999999999999999999999999999998654 444
Q ss_pred Hhh
Q 001385 528 RAI 530 (1088)
Q Consensus 528 ~~~ 530 (1088)
..+
T Consensus 524 ~iV 526 (2102)
T PLN03200 524 ACV 526 (2102)
T ss_pred HHH
Confidence 444
No 88
>PLN03150 hypothetical protein; Provisional
Probab=98.60 E-value=9.8e-08 Score=117.81 Aligned_cols=105 Identities=24% Similarity=0.380 Sum_probs=94.1
Q ss_pred CccEEEccCCCCC-CccccccCCCCCcEEEccCCCCC-CCchhhcCCCCCcEEEccCCcCc-ccchhccCCCCCCEEEec
Q 001385 175 TVTAVSLCGLGLS-ALPVDLTRLPVLEKLYLDNNKLS-TLPPELGAMKNLKVLIVDNNMLV-CVPVELRECVGLVELSLE 251 (1088)
Q Consensus 175 ~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~Ls 251 (1088)
.++.|+|++|.++ .+|..+..+++|+.|+|++|.++ .+|..+..+++|+.|+|++|+++ .+|..+++|++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4889999999998 88999999999999999999998 89999999999999999999999 899999999999999999
Q ss_pred cCCCCCCcc-cccC-CccccEEEecCCCCC
Q 001385 252 HNRLVRPLL-DFRA-MAELKILRLFGNPLE 279 (1088)
Q Consensus 252 ~N~l~~~~~-~l~~-l~~L~~L~Ls~N~l~ 279 (1088)
+|.+++..+ .+.. +.++..+++.+|...
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccc
Confidence 999997665 4554 356788999988643
No 89
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.59 E-value=1.1e-09 Score=126.77 Aligned_cols=155 Identities=25% Similarity=0.268 Sum_probs=113.7
Q ss_pred cccccCCCCccEEEccCCCCCCccccccCC-CCCcEEEccCCCCCCCchh-------hc---CCCCCcEEEccCCcCccc
Q 001385 167 SGFCDHWKTVTAVSLCGLGLSALPVDLTRL-PVLEKLYLDNNKLSTLPPE-------LG---AMKNLKVLIVDNNMLVCV 235 (1088)
Q Consensus 167 ~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l-~~L~~L~L~~N~l~~lp~~-------l~---~l~~L~~L~Ls~N~l~~l 235 (1088)
|-.+..+.+|+.|.|.++.|... ..+..+ ..|++|. .+|.+..+-.. +. .+..|.+.+.++|.+..+
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~-~GL~~lr~qLe~LI-C~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~m 179 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTA-KGLQELRHQLEKLI-CHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLM 179 (1096)
T ss_pred CceeccccceeeEEecCcchhhh-hhhHHHHHhhhhhh-hhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhH
Confidence 34455677777777777777642 222222 2345552 33333322111 11 245688889999999988
Q ss_pred chhccCCCCCCEEEeccCCCCCCcccccCCccccEEEecCCCCCCCcccc--CCCCCCeEEeeCCCCCCCccccchhhhh
Q 001385 236 PVELRECVGLVELSLEHNRLVRPLLDFRAMAELKILRLFGNPLEFLPEIL--PLLKLRHLSLANIRIVADENLRSVNVQI 313 (1088)
Q Consensus 236 p~~l~~l~~L~~L~Ls~N~l~~~~~~l~~l~~L~~L~Ls~N~l~~l~~l~--~l~~L~~L~L~~N~l~~~~~l~~l~~~~ 313 (1088)
..++.-++.|+.|+|++|+++... .+..|++|++|||++|.+..+|.+. .+ +|+.|.|++|.++.+-.+.+
T Consensus 180 D~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l~tL~gie~----- 252 (1096)
T KOG1859|consen 180 DESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNALTTLRGIEN----- 252 (1096)
T ss_pred HHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhh-hheeeeecccHHHhhhhHHh-----
Confidence 888888999999999999998764 7889999999999999999888665 34 49999999999998766765
Q ss_pred cCcCCccccccccchhhh
Q 001385 314 EMENNSYFGASRHKLSAF 331 (1088)
Q Consensus 314 ~l~~l~~l~l~~n~l~~~ 331 (1088)
|.+|..||++.|-+.+.
T Consensus 253 -LksL~~LDlsyNll~~h 269 (1096)
T KOG1859|consen 253 -LKSLYGLDLSYNLLSEH 269 (1096)
T ss_pred -hhhhhccchhHhhhhcc
Confidence 77888999999987763
No 90
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.51 E-value=3.4e-08 Score=104.04 Aligned_cols=89 Identities=21% Similarity=0.210 Sum_probs=45.3
Q ss_pred hcCCCCCccEEEeeCCCCCCC--CccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCC--CccccccC
Q 001385 120 VVKRREPLRAVVLTKGVGSGH--LSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLS--ALPVDLTR 195 (1088)
Q Consensus 120 ~~~~l~~L~~L~Ls~n~i~~~--~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~ 195 (1088)
.-..+++++.|||.+|.|+.- +...+.+|++|++|+|+.|.+ ...+...-..+.+|++|-|.+..+. .....+..
T Consensus 66 ~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L-~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~ 144 (418)
T KOG2982|consen 66 FGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSL-SSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDD 144 (418)
T ss_pred HHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcC-CCccccCcccccceEEEEEcCCCCChhhhhhhhhc
Confidence 334455666666666665532 223345566666666666652 2222111124456666666666554 33334455
Q ss_pred CCCCcEEEccCCCC
Q 001385 196 LPVLEKLYLDNNKL 209 (1088)
Q Consensus 196 l~~L~~L~L~~N~l 209 (1088)
++.++.|+++.|.+
T Consensus 145 lP~vtelHmS~N~~ 158 (418)
T KOG2982|consen 145 LPKVTELHMSDNSL 158 (418)
T ss_pred chhhhhhhhccchh
Confidence 55555665555543
No 91
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.51 E-value=5.1e-07 Score=97.12 Aligned_cols=174 Identities=18% Similarity=0.188 Sum_probs=146.8
Q ss_pred HHHhhhhcCCCCccccccccccccccceeeccCChhhhhhHHHHhccccCCchhhHHHHHCCCcHHHHHHhccCChHHHH
Q 001385 348 SALAKIMQDQENRVVVGKDENAVRQLISMISSDNRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAPEEVK 427 (1088)
Q Consensus 348 ~~L~~i~~l~~N~l~ip~~~~~Lp~L~~L~Ls~N~~v~~~a~~~L~~L~~~~~~~~~l~~~~~~~~Ll~lL~~~~~~~~~ 427 (1088)
.+++++.....|...+.. .|.+..|+.|.-+.+..++..+..+|.++...-++...++..|.++-|+.++++.+...+.
T Consensus 148 gCitnLaT~d~nk~kiA~-sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqy 226 (550)
T KOG4224|consen 148 GCITNLATFDSNKVKIAR-SGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQY 226 (550)
T ss_pred hhhhhhhccccchhhhhh-ccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHH
Confidence 345555555555543332 4678888889989999999999999999997767779999999999999999999999998
Q ss_pred HHHHHHHhhhccChHHHHHHhhhh--hHHHHHHHhcCCChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcCC
Q 001385 428 SVLQVVGQLAFASDTVAQKMLTKD--VLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGP 505 (1088)
Q Consensus 428 ~~l~~L~~L~~~sd~~~~~v~~~g--~lp~L~~Ll~~~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~~ 505 (1088)
.+..++.+++ .+......+.+.+ ++|.|+.|+.+.+..+|..|-.|++|++...++++.++ ++|.+|.+++++.++
T Consensus 227 ycttaisnIa-Vd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv-~ag~lP~lv~Llqs~ 304 (550)
T KOG4224|consen 227 YCTTAISNIA-VDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIV-EAGSLPLLVELLQSP 304 (550)
T ss_pred HHHHHhhhhh-hhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHH-hcCCchHHHHHHhCc
Confidence 8889999888 5555666677777 99999999999999999999999999999999999987 899999999999999
Q ss_pred chhHHHHHHHHHHhhcchH
Q 001385 506 EPRVNKAAARALAILGENE 524 (1088)
Q Consensus 506 ~~~v~~~a~~aL~~l~~~~ 524 (1088)
.-+..-+...|+.+++-++
T Consensus 305 ~~plilasVaCIrnisihp 323 (550)
T KOG4224|consen 305 MGPLILASVACIRNISIHP 323 (550)
T ss_pred chhHHHHHHHHHhhccccc
Confidence 8888888888887777664
No 92
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.50 E-value=6.4e-07 Score=85.73 Aligned_cols=118 Identities=20% Similarity=0.230 Sum_probs=107.3
Q ss_pred HHHHCCCcHHHHHHhccCChHHHHHHHHHHHhhhccChHHHHHHhhhhhHHHHHHHhcCCChhHHHHHHHHHhhhhcccc
Q 001385 404 LLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLE 483 (1088)
Q Consensus 404 ~l~~~~~~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd~~~~~v~~~g~lp~L~~Ll~~~~~~vq~~Al~algnla~~~~ 483 (1088)
.+++.|+++.++.++.+.+...+..++.+|.+++..++.....+++.|++|.|..++.+.+++++..|+++++|++....
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 35788999999999998888888999999999998878888888889999999999999999999999999999998887
Q ss_pred ccceeecccChhhhhHhhhcCCchhHHHHHHHHHHhhc
Q 001385 484 NRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILG 521 (1088)
Q Consensus 484 ~~~~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~ 521 (1088)
.....+...++.+.|++++...+.++++.+++++..+.
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 77777778899999999999999999999999998875
No 93
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.46 E-value=1.3e-07 Score=101.68 Aligned_cols=156 Identities=22% Similarity=0.212 Sum_probs=138.1
Q ss_pred ceeeccCChhhhhhHHHHhccccCCchhhHHHHHCCCcHHHHHHhccCChHHHHHHHHHHHhhhccChHHHHHHhhhhhH
Q 001385 374 ISMISSDNRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVL 453 (1088)
Q Consensus 374 ~~L~Ls~N~~v~~~a~~~L~~L~~~~~~~~~l~~~~~~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd~~~~~v~~~g~l 453 (1088)
..|.-+-.+.+...++.++||++.....+..+++.++++.|+..+-.+..+.+.++..|+.+|+.- |.+.-.+...|++
T Consensus 91 l~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~-d~nk~kiA~sGaL 169 (550)
T KOG4224|consen 91 LALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATF-DSNKVKIARSGAL 169 (550)
T ss_pred HHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhcc-ccchhhhhhccch
Confidence 334455667788889999999999888888889999999998887777778888899999999966 5566678899999
Q ss_pred HHHHHHhcCCChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcCCchhHHHHHHHHHHhhcchHHHHHhhh
Q 001385 454 KSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGENESLRRAIR 531 (1088)
Q Consensus 454 p~L~~Ll~~~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~r~~~~ 531 (1088)
-.|.+|-++++.++|+.|+.++-|++...++|+++| .+|.+|+|+.++.+.+.+++..+|.+++.++-+...|+...
T Consensus 170 ~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV-~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~La 246 (550)
T KOG4224|consen 170 EPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLV-HAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILA 246 (550)
T ss_pred hhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhh-ccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHH
Confidence 999999999999999999999999999999999988 88999999999999999999999999999999887777654
No 94
>KOG3773 consensus Adiponutrin and related vesicular transport proteins; predicted alpha/beta hydrolase [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.38 E-value=3.4e-07 Score=98.17 Aligned_cols=166 Identities=17% Similarity=0.201 Sum_probs=115.6
Q ss_pred eEEEecCCCchHHHHHHHHHHHHHhcCCCCCcccce-EEecchHHHHHHHHhcCCCCHHHHHHHHHHhhccccCCCCCCC
Q 001385 541 RILSMDGGGMKGLATVQILKEIEKGTGKRIHELFDL-VCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVFAEPFPKD 619 (1088)
Q Consensus 541 riLsLdGGG~RG~~~~~vL~~Le~~~~~~i~~~FDl-i~GTStG~iiA~~l~~~~~s~~e~~~~y~~~~~~iF~~~~~~~ 619 (1088)
.-||+.|-|.-|+||+|+-+.+-+...+.+. |. |+|.|+|+++|..+..+ .+++++...+..+..++-.+..
T Consensus 7 ~~lSfsg~gFlg~yh~gaa~~l~~~ap~ll~---~~~~~GaSagsl~a~~ll~~-~~l~~a~~~l~~~v~e~~~~s~--- 79 (354)
T KOG3773|consen 7 MNLSFSGCGFLGIYHVGAANCLPRHAPRLLK---DRSIAGASAGSLVACDLLCG-LSLEEATGELYKMVDEARRKSL--- 79 (354)
T ss_pred hheeecCCceeEEEecchHHHHHHHHHHHhc---cccccCcccchHHHhhhhcc-ccHHHHHHHHHHHHHHHHHhhc---
Confidence 5699999999999999999988776443332 45 89999999999999664 6899988776666554432210
Q ss_pred chhhhHHHHHHHHhhcccccceeEeccCCCCHHHHHHHHHHHhcCCCCCchhccccCCCCEEEEEEeeeccCCCccEEee
Q 001385 620 NEAATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMPAQPFIFR 699 (1088)
Q Consensus 620 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~Lk~~~~~~~g~~~~~~~~~~~~k~~vv~t~~d~~~~~~~lf~ 699 (1088)
+ .++-+....+.+.+.+++.+.+ +. . .....|..+-.| .+..++-++..
T Consensus 80 --------------g--------~~tP~f~~~~~l~~~le~~LPp---da-~---~la~~rl~iSlT--r~~~~~N~lis 128 (354)
T KOG3773|consen 80 --------------G--------AFTPGFNLSDRLRSGLEDFLPP---DA-H---WLASGRLHISLT--RVKDRENVLIS 128 (354)
T ss_pred --------------C--------CCCCCcCHHHHHHHHHHHhCCh---HH-H---HHhhcceeEEEE--eeeehhhhhhh
Confidence 0 1223344667777777777632 11 1 111223333333 56666666666
Q ss_pred cCCCCCCCCCCCccccCCCCccccCCCCCCCccccccccccCCCcchHHHHHHHhcCCCCCCC--CccCCCceeeeCccc
Q 001385 700 NYQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLD--DFSDDVFRWQDGAIV 777 (1088)
Q Consensus 700 ny~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dA~rASsAaP~yF~--p~~~~~~~~vDGGl~ 777 (1088)
.|.+. .-+.||+++||=+|.|-. |..+.+..|+|||+.
T Consensus 129 ~F~s~----------------------------------------~~liq~L~~scyiP~ysg~~pp~~rg~~yiDGg~s 168 (354)
T KOG3773|consen 129 EFPSR----------------------------------------DELIQALMCSCYIPMYSGLKPPIFRGVRYIDGGTS 168 (354)
T ss_pred ccccH----------------------------------------HHHHHHHHHhccCccccCCCCcceeeEEEeccccc
Confidence 66532 348999999999999964 556789999999999
Q ss_pred CCChHHH
Q 001385 778 ANNPTIF 784 (1088)
Q Consensus 778 ~NNP~~~ 784 (1088)
+|-|...
T Consensus 169 nnlP~~~ 175 (354)
T KOG3773|consen 169 NNLPEAD 175 (354)
T ss_pred ccccccC
Confidence 9999865
No 95
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.33 E-value=2.5e-07 Score=116.64 Aligned_cols=178 Identities=22% Similarity=0.216 Sum_probs=114.0
Q ss_pred CCCCccEEEeeCCC--CCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCccccccCCCCCc
Q 001385 123 RREPLRAVVLTKGV--GSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPVLE 200 (1088)
Q Consensus 123 ~l~~L~~L~Ls~n~--i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~ 200 (1088)
.+++|++|-+..|. +.....+.|..++.|++|||++|. ....+|..++.|-+||+|+|+++.++.+|..+.+|..|.
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~-~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNS-SLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLI 621 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCC-ccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhh
Confidence 44568888888875 433334457778888888888887 667788888888888888888888888888888888888
Q ss_pred EEEccCCCCC-CCchhhcCCCCCcEEEccCCcCc---ccchhccCCCCCCEEEeccCCCCCCcccccCCcccc----EEE
Q 001385 201 KLYLDNNKLS-TLPPELGAMKNLKVLIVDNNMLV---CVPVELRECVGLVELSLEHNRLVRPLLDFRAMAELK----ILR 272 (1088)
Q Consensus 201 ~L~L~~N~l~-~lp~~l~~l~~L~~L~Ls~N~l~---~lp~~l~~l~~L~~L~Ls~N~l~~~~~~l~~l~~L~----~L~ 272 (1088)
+|++..+.-. .+|..+..|.+|++|.+...... ..-..+.++.+|+.|....... .....+..+..|. .+.
T Consensus 622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~~~e~l~~~~~L~~~~~~l~ 700 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-LLLEDLLGMTRLRSLLQSLS 700 (889)
T ss_pred eeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-HhHhhhhhhHHHHHHhHhhh
Confidence 8888877644 44555566888888887655422 2223445555555555533332 1112233333333 333
Q ss_pred ecCCCCC-CCccccCCCCCCeEEeeCCCCCC
Q 001385 273 LFGNPLE-FLPEILPLLKLRHLSLANIRIVA 302 (1088)
Q Consensus 273 Ls~N~l~-~l~~l~~l~~L~~L~L~~N~l~~ 302 (1088)
+.++... .+..+..+.+|+.|.+.++.+.+
T Consensus 701 ~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e 731 (889)
T KOG4658|consen 701 IEGCSKRTLISSLGSLGNLEELSILDCGISE 731 (889)
T ss_pred hcccccceeecccccccCcceEEEEcCCCch
Confidence 3333332 44466677788888887777764
No 96
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.31 E-value=3.6e-07 Score=76.37 Aligned_cols=59 Identities=15% Similarity=0.124 Sum_probs=30.7
Q ss_pred CccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCC
Q 001385 126 PLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLG 185 (1088)
Q Consensus 126 ~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~ 185 (1088)
+|++|++++|+++...+..|.++++|++|++++|. +....+..|..+++|++|+|++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCCc
Confidence 45555555555554433455555555555555555 344444455555555555555554
No 97
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.29 E-value=4.5e-08 Score=92.05 Aligned_cols=106 Identities=22% Similarity=0.223 Sum_probs=52.9
Q ss_pred ccEEEccCCCCCCcccc---ccCCCCCcEEEccCCCCCCCchhhc-CCCCCcEEEccCCcCcccchhccCCCCCCEEEec
Q 001385 176 VTAVSLCGLGLSALPVD---LTRLPVLEKLYLDNNKLSTLPPELG-AMKNLKVLIVDNNMLVCVPVELRECVGLVELSLE 251 (1088)
Q Consensus 176 L~~L~Ls~n~l~~lp~~---l~~l~~L~~L~L~~N~l~~lp~~l~-~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~Ls 251 (1088)
+..|+|+.|.|-.+++. +.....|...+|++|.+..+|+.|. +.+.++.|+|++|.|+.+|.++..++.|+.|+++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~ 108 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLR 108 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccc
Confidence 33444555544433332 2333344444555555555555443 3335555555555555555555555555555555
Q ss_pred cCCCCCCcccccCCccccEEEecCCCCCCC
Q 001385 252 HNRLVRPLLDFRAMAELKILRLFGNPLEFL 281 (1088)
Q Consensus 252 ~N~l~~~~~~l~~l~~L~~L~Ls~N~l~~l 281 (1088)
.|.+...+.-+..|.+|..|+..+|.+..+
T Consensus 109 ~N~l~~~p~vi~~L~~l~~Lds~~na~~ei 138 (177)
T KOG4579|consen 109 FNPLNAEPRVIAPLIKLDMLDSPENARAEI 138 (177)
T ss_pred cCccccchHHHHHHHhHHHhcCCCCccccC
Confidence 555555444444455555555555554433
No 98
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.23 E-value=6.7e-07 Score=74.74 Aligned_cols=59 Identities=32% Similarity=0.550 Sum_probs=37.9
Q ss_pred CCccEEEccCCCCCCccc-cccCCCCCcEEEccCCCCCCCc-hhhcCCCCCcEEEccCCcC
Q 001385 174 KTVTAVSLCGLGLSALPV-DLTRLPVLEKLYLDNNKLSTLP-PELGAMKNLKVLIVDNNML 232 (1088)
Q Consensus 174 ~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~N~l~~lp-~~l~~l~~L~~L~Ls~N~l 232 (1088)
++|++|+|++|+|+.+|. .+..+++|++|++++|+++.++ ..|..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 356666666666666664 4556666777777766666555 3556667777777776654
No 99
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.21 E-value=5.7e-08 Score=91.36 Aligned_cols=111 Identities=23% Similarity=0.279 Sum_probs=66.0
Q ss_pred CccEEEeeCCCCCCCCccc---cccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCccccccCCCCCcEE
Q 001385 126 PLRAVVLTKGVGSGHLSDG---IGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPVLEKL 202 (1088)
Q Consensus 126 ~L~~L~Ls~n~i~~~~p~~---l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L 202 (1088)
.+..++|+.|.+.. +++. +....+|...+|++|. +....+..-.+++.++.|+|++|.|+.+|..+..++.|+.|
T Consensus 28 E~h~ldLssc~lm~-i~davy~l~~~~el~~i~ls~N~-fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMY-IADAVYMLSKGYELTKISLSDNG-FKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSL 105 (177)
T ss_pred HhhhcccccchhhH-HHHHHHHHhCCceEEEEecccch-hhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhc
Confidence 35566777776532 3433 3344556666677766 33333333344556666666666666666666666666666
Q ss_pred EccCCCCCCCchhhcCCCCCcEEEccCCcCcccchh
Q 001385 203 YLDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVE 238 (1088)
Q Consensus 203 ~L~~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~lp~~ 238 (1088)
+++.|.+...|..+..|.+|-.|+..+|.+..+|..
T Consensus 106 Nl~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 106 NLRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred ccccCccccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence 666666666666665666666666666666655543
No 100
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.17 E-value=6.9e-07 Score=93.22 Aligned_cols=221 Identities=20% Similarity=0.162 Sum_probs=128.6
Q ss_pred cCCCchhHHHHHHHHHHHHhCCCCCCceEEeccCCCCCcccccccccccchhhcCCCCCccEEEeeCCCCCCC----Cc-
Q 001385 68 TSGEEEDQVALKLQSQLMVALPVPEDTVVVELAPQEEGDVATDAANVGVEMRVVKRREPLRAVVLTKGVGSGH----LS- 142 (1088)
Q Consensus 68 ~~~~~~~~~~~~l~s~l~~~lp~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~----~p- 142 (1088)
.+.++...+...+ ..+..++.++++++..+.++ ..--...+.+-.+|+..+++.- +++. ++
T Consensus 14 ~T~eDvk~v~eel--------~~~d~~~evdLSGNtigtEA-----~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~ 79 (388)
T COG5238 14 ETKEDVKGVVEEL--------EMMDELVEVDLSGNTIGTEA-----MEELCNVIANVRNLRVVNFSDA-FTGRDKDELYS 79 (388)
T ss_pred cccchhhHHHHHH--------HhhcceeEEeccCCcccHHH-----HHHHHHHHhhhcceeEeehhhh-hhcccHHHHHH
Confidence 3455555555444 22456678888877764322 2222356666778888887764 3332 22
Q ss_pred ------cccccCccccEEeCcCCCCCCCCcc---ccccCCCCccEEEccCCCCCCcc-----c---------cccCCCCC
Q 001385 143 ------DGIGVLTRLMRSDLSTSGPGNNMGS---GFCDHWKTVTAVSLCGLGLSALP-----V---------DLTRLPVL 199 (1088)
Q Consensus 143 ------~~l~~l~~L~~L~Ls~N~l~~~~~~---~~~~~l~~L~~L~Ls~n~l~~lp-----~---------~l~~l~~L 199 (1088)
..+.+|++|+..+||.|.+....++ +.+.+-..|++|.|++|.+..+. . ...+-+.|
T Consensus 80 ~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~L 159 (388)
T COG5238 80 NLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKL 159 (388)
T ss_pred HHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCc
Confidence 3456778888888888873322222 24455677888888888776332 1 12334667
Q ss_pred cEEEccCCCCCCCch-----hhcCCCCCcEEEccCCcCcc------cchhccCCCCCCEEEeccCCCCCCc-----cccc
Q 001385 200 EKLYLDNNKLSTLPP-----ELGAMKNLKVLIVDNNMLVC------VPVELRECVGLVELSLEHNRLVRPL-----LDFR 263 (1088)
Q Consensus 200 ~~L~L~~N~l~~lp~-----~l~~l~~L~~L~Ls~N~l~~------lp~~l~~l~~L~~L~Ls~N~l~~~~-----~~l~ 263 (1088)
++.....|++..-|. .+....+|+++.+..|.|.. +-..+..+.+|+.|||.+|-++... ..+.
T Consensus 160 e~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~ 239 (388)
T COG5238 160 EVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALC 239 (388)
T ss_pred eEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhc
Confidence 777777777764442 22333567777777777651 1123455677777777777776433 2355
Q ss_pred CCccccEEEecCCCCC--CCc----ccc--CCCCCCeEEeeCCCCCC
Q 001385 264 AMAELKILRLFGNPLE--FLP----EIL--PLLKLRHLSLANIRIVA 302 (1088)
Q Consensus 264 ~l~~L~~L~Ls~N~l~--~l~----~l~--~l~~L~~L~L~~N~l~~ 302 (1088)
.++.|+.|.+..|-++ ... .+. ..++|..|...+|.+..
T Consensus 240 ~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~ 286 (388)
T COG5238 240 EWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRG 286 (388)
T ss_pred ccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcC
Confidence 5566777777777665 111 111 34566677676665543
No 101
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.14 E-value=8.6e-07 Score=93.68 Aligned_cols=84 Identities=20% Similarity=0.175 Sum_probs=41.6
Q ss_pred CccccEEeCcCCCCCCCC-ccccccCCCCccEEEccCCCCCCccccc-cCCCCCcEEEccCCCCC--CCchhhcCCCCCc
Q 001385 148 LTRLMRSDLSTSGPGNNM-GSGFCDHWKTVTAVSLCGLGLSALPVDL-TRLPVLEKLYLDNNKLS--TLPPELGAMKNLK 223 (1088)
Q Consensus 148 l~~L~~L~Ls~N~l~~~~-~~~~~~~l~~L~~L~Ls~n~l~~lp~~l-~~l~~L~~L~L~~N~l~--~lp~~l~~l~~L~ 223 (1088)
+++++.|||.+|.+..+. +...+.+|+.|++|+|+.|.+...-..+ ..+.+|++|.|++..+. .....+..++.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 455666666666522221 2334455666666666666555211111 23445566666555554 3334445555555
Q ss_pred EEEccCCc
Q 001385 224 VLIVDNNM 231 (1088)
Q Consensus 224 ~L~Ls~N~ 231 (1088)
.|+++.|.
T Consensus 150 elHmS~N~ 157 (418)
T KOG2982|consen 150 ELHMSDNS 157 (418)
T ss_pred hhhhccch
Confidence 55555553
No 102
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=1.2e-07 Score=99.95 Aligned_cols=173 Identities=16% Similarity=0.089 Sum_probs=105.6
Q ss_pred CCccEEEeeCCCCCCC-CccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCC-CCCcc--ccccCCCCCc
Q 001385 125 EPLRAVVLTKGVGSGH-LSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLG-LSALP--VDLTRLPVLE 200 (1088)
Q Consensus 125 ~~L~~L~Ls~n~i~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~lp--~~l~~l~~L~ 200 (1088)
++|+.|||++..|+.. +-..+..|.+|+.|.|.+++ +.+.+...+.+-.+|+.|||+.+. +++.. --+.+++.|.
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~-LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLR-LDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccc-cCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 3577777777766532 22345667778888888877 566666667777788888887654 55322 2356777788
Q ss_pred EEEccCCCCC--CCchhhc-CCCCCcEEEccCCcCc----ccchhccCCCCCCEEEeccCCCCCCc--ccccCCccccEE
Q 001385 201 KLYLDNNKLS--TLPPELG-AMKNLKVLIVDNNMLV----CVPVELRECVGLVELSLEHNRLVRPL--LDFRAMAELKIL 271 (1088)
Q Consensus 201 ~L~L~~N~l~--~lp~~l~-~l~~L~~L~Ls~N~l~----~lp~~l~~l~~L~~L~Ls~N~l~~~~--~~l~~l~~L~~L 271 (1088)
.|+|+.|.+. .+...+. --++|..|+|+++.-. ++..-...+++|.+|||++|..-... ..|.+++.|++|
T Consensus 264 ~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~l 343 (419)
T KOG2120|consen 264 ELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHL 343 (419)
T ss_pred hcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheee
Confidence 8888877765 1111111 1246777777775421 33333466778888888776432211 346677777777
Q ss_pred EecCCCCC---CCccccCCCCCCeEEeeCC
Q 001385 272 RLFGNPLE---FLPEILPLLKLRHLSLANI 298 (1088)
Q Consensus 272 ~Ls~N~l~---~l~~l~~l~~L~~L~L~~N 298 (1088)
.|+.|..- .+-.+...++|.+|++.+.
T Consensus 344 SlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 344 SLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred ehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 77776533 2224556677777776654
No 103
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.07 E-value=5.1e-06 Score=83.72 Aligned_cols=99 Identities=25% Similarity=0.360 Sum_probs=54.3
Q ss_pred CCcEEEccCCCCCCCchhhcCCCCCcEEEccCCcCcccchhcc-CCCCCCEEEeccCCCCCCcc--cccCCccccEEEec
Q 001385 198 VLEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVELR-ECVGLVELSLEHNRLVRPLL--DFRAMAELKILRLF 274 (1088)
Q Consensus 198 ~L~~L~L~~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~lp~~l~-~l~~L~~L~Ls~N~l~~~~~--~l~~l~~L~~L~Ls 274 (1088)
+...+||++|.+..++ .|..++.|.+|.|.+|+|+.|...+. -+++|..|.|.+|+|..+.+ .+..+++|++|.+-
T Consensus 43 ~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred ccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 4556666666665443 35556666666666666665554443 23456666666666655432 35555566666666
Q ss_pred CCCCCCCc-----cccCCCCCCeEEeeC
Q 001385 275 GNPLEFLP-----EILPLLKLRHLSLAN 297 (1088)
Q Consensus 275 ~N~l~~l~-----~l~~l~~L~~L~L~~ 297 (1088)
+|+++.-+ .+..+++|++||.+.
T Consensus 122 ~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 122 GNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred CCchhcccCceeEEEEecCcceEeehhh
Confidence 66555222 234455555555433
No 104
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.00 E-value=3.4e-06 Score=88.15 Aligned_cols=183 Identities=18% Similarity=0.132 Sum_probs=115.2
Q ss_pred hhcCCCCCccEEEeeCCCCCCCC----ccccccCccccEEeCcCCCCCCC---Cc-------cccccCCCCccEEEccCC
Q 001385 119 RVVKRREPLRAVVLTKGVGSGHL----SDGIGVLTRLMRSDLSTSGPGNN---MG-------SGFCDHWKTVTAVSLCGL 184 (1088)
Q Consensus 119 ~~~~~l~~L~~L~Ls~n~i~~~~----p~~l~~l~~L~~L~Ls~N~l~~~---~~-------~~~~~~l~~L~~L~Ls~n 184 (1088)
..+..+..+..++||+|.|...- ...+.+-.+|++.+++.-. +.. .+ ...+-+|++|+..+||.|
T Consensus 24 eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~f-tgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN 102 (388)
T COG5238 24 EELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAF-TGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN 102 (388)
T ss_pred HHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhh-hcccHHHHHHHHHHHHHHHhcCCcceeeecccc
Confidence 34445788999999999987543 3445566888888888753 211 11 223457788888888888
Q ss_pred CCC-Ccc----ccccCCCCCcEEEccCCCCCCCc-----hh---------hcCCCCCcEEEccCCcCcccch-----hcc
Q 001385 185 GLS-ALP----VDLTRLPVLEKLYLDNNKLSTLP-----PE---------LGAMKNLKVLIVDNNMLVCVPV-----ELR 240 (1088)
Q Consensus 185 ~l~-~lp----~~l~~l~~L~~L~L~~N~l~~lp-----~~---------l~~l~~L~~L~Ls~N~l~~lp~-----~l~ 240 (1088)
-+. ..| +.|.+-+.|.+|.|++|.+..+. .. ...-+.|++.....|++...+. .+.
T Consensus 103 Afg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~ 182 (388)
T COG5238 103 AFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLE 182 (388)
T ss_pred ccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHH
Confidence 877 333 34667778888888888876332 11 2234667777777777764443 222
Q ss_pred CCCCCCEEEeccCCCCCCc------ccccCCccccEEEecCCCCCCCc------cccCCCCCCeEEeeCCCCCC
Q 001385 241 ECVGLVELSLEHNRLVRPL------LDFRAMAELKILRLFGNPLEFLP------EILPLLKLRHLSLANIRIVA 302 (1088)
Q Consensus 241 ~l~~L~~L~Ls~N~l~~~~------~~l~~l~~L~~L~Ls~N~l~~l~------~l~~l~~L~~L~L~~N~l~~ 302 (1088)
.-.+|+.+.+..|.|.... ..+..+.+|+.|||..|-++... .+...+.|+.|.+..|-++.
T Consensus 183 sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~ 256 (388)
T COG5238 183 SHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSN 256 (388)
T ss_pred hhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhcc
Confidence 2246777777777765321 13456677777777777766211 23344556777777766654
No 105
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.95 E-value=3.7e-05 Score=73.42 Aligned_cols=112 Identities=26% Similarity=0.283 Sum_probs=98.5
Q ss_pred ccccccceeeccCChhhhhhHHHHhccccCCchhh-HHHHHCCCcHHHHHHhccCChHHHHHHHHHHHhhhccChHHHHH
Q 001385 368 NAVRQLISMISSDNRHVVEQACSALSSLAGDVSVA-MLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQK 446 (1088)
Q Consensus 368 ~~Lp~L~~L~Ls~N~~v~~~a~~~L~~L~~~~~~~-~~l~~~~~~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd~~~~~ 446 (1088)
+.++.|..+.-..+..+...++++|++++...+.. ..+++.++++.++.++.+.++..+..++.+|.+++.........
T Consensus 7 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 86 (120)
T cd00020 7 GGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLI 86 (120)
T ss_pred CChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHH
Confidence 45666666666777889999999999999986666 88888999999999999988899999999999999877667777
Q ss_pred HhhhhhHHHHHHHhcCCChhHHHHHHHHHhhhh
Q 001385 447 MLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLA 479 (1088)
Q Consensus 447 v~~~g~lp~L~~Ll~~~~~~vq~~Al~algnla 479 (1088)
+.+.|+++.|.+++...+..++..|++++.|++
T Consensus 87 ~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 87 VLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 888999999999999999999999999999885
No 106
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=97.87 E-value=0.00013 Score=79.11 Aligned_cols=156 Identities=17% Similarity=0.192 Sum_probs=124.4
Q ss_pred ccccccee-eccCChhhhhhHHHHhccccCCchhhHHHHHCCCcHHHHHHhccCChHHHHHHHHHHHhhhccChHHHHHH
Q 001385 369 AVRQLISM-ISSDNRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKM 447 (1088)
Q Consensus 369 ~Lp~L~~L-~Ls~N~~v~~~a~~~L~~L~~~~~~~~~l~~~~~~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd~~~~~v 447 (1088)
.+.+|..+ ..+.++.+.+.+..++++.+........+.+.|++..+..++..+++.....++.+|.+++...+... .
T Consensus 13 ~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~-~- 90 (254)
T PF04826_consen 13 ELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQE-Q- 90 (254)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHH-H-
Confidence 45555554 56788999999999999999888777999999999999999999999999999999999985443332 2
Q ss_pred hhhhhHHHHHHHhcC--CChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcCCchhHHHHHHHHHHhhcchHH
Q 001385 448 LTKDVLKSLKLLCAH--KNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGENES 525 (1088)
Q Consensus 448 ~~~g~lp~L~~Ll~~--~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 525 (1088)
++. .++.+.+...+ .+..+|..+++++.|++...+.+..+. ..++.++.++...+..++..+.++|.++++++.
T Consensus 91 Ik~-~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~---~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~ 166 (254)
T PF04826_consen 91 IKM-YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA---NYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPD 166 (254)
T ss_pred HHH-HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH---hhHHHHHHHHHcCChHHHHHHHHHHHHhccCHH
Confidence 232 35555554443 477899999999999988877766543 457788999999999999999999999999987
Q ss_pred HHHhh
Q 001385 526 LRRAI 530 (1088)
Q Consensus 526 ~r~~~ 530 (1088)
..+.+
T Consensus 167 ~~~~L 171 (254)
T PF04826_consen 167 MTREL 171 (254)
T ss_pred HHHHH
Confidence 65443
No 107
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.86 E-value=2.3e-05 Score=79.10 Aligned_cols=102 Identities=28% Similarity=0.389 Sum_probs=66.8
Q ss_pred CCccEEEccCCCCCCccccccCCCCCcEEEccCCCCCCCchhhc-CCCCCcEEEccCCcCcccch--hccCCCCCCEEEe
Q 001385 174 KTVTAVSLCGLGLSALPVDLTRLPVLEKLYLDNNKLSTLPPELG-AMKNLKVLIVDNNMLVCVPV--ELRECVGLVELSL 250 (1088)
Q Consensus 174 ~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~N~l~~lp~~l~-~l~~L~~L~Ls~N~l~~lp~--~l~~l~~L~~L~L 250 (1088)
.+...+||++|.+..++ .+..++.|.+|.|++|+|+.+.+.+. .+++|..|.|.+|.|..+.+ .+..|+.|++|.+
T Consensus 42 d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred cccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 34556666666666553 45566777777777777776655553 35567777777777764432 4566777888888
Q ss_pred ccCCCCCCcc----cccCCccccEEEecCC
Q 001385 251 EHNRLVRPLL----DFRAMAELKILRLFGN 276 (1088)
Q Consensus 251 s~N~l~~~~~----~l~~l~~L~~L~Ls~N 276 (1088)
-+|..+.... -+..+++|+.||...-
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhhh
Confidence 7777765441 2677788888887653
No 108
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.84 E-value=3.6e-05 Score=87.72 Aligned_cols=134 Identities=13% Similarity=0.122 Sum_probs=91.2
Q ss_pred cCCCCCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCC-CCCCccccccCCCCC
Q 001385 121 VKRREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGL-GLSALPVDLTRLPVL 199 (1088)
Q Consensus 121 ~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L 199 (1088)
+..+.+++.|++++|.++. +|. + -.+|+.|++++|. ....+|..+ ..+|++|++++| .+..+|. +|
T Consensus 48 ~~~~~~l~~L~Is~c~L~s-LP~-L--P~sLtsL~Lsnc~-nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDCDIES-LPV-L--PNELTEITIENCN-NLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SV 114 (426)
T ss_pred HHHhcCCCEEEeCCCCCcc-cCC-C--CCCCcEEEccCCC-CcccCCchh--hhhhhheEccCccccccccc------cc
Confidence 4456889999999998765 452 2 2469999999876 334455544 368999999998 7777775 46
Q ss_pred cEEEccCCCCC---CCchhhcCCCCCcEEEccCCc-Cc--ccchhccCCCCCCEEEeccCCCCCCcccccCCccccEEEe
Q 001385 200 EKLYLDNNKLS---TLPPELGAMKNLKVLIVDNNM-LV--CVPVELRECVGLVELSLEHNRLVRPLLDFRAMAELKILRL 273 (1088)
Q Consensus 200 ~~L~L~~N~l~---~lp~~l~~l~~L~~L~Ls~N~-l~--~lp~~l~~l~~L~~L~Ls~N~l~~~~~~l~~l~~L~~L~L 273 (1088)
+.|+++.|.+. .+|. +|+.|.+.+++ .. .+|..+ -++|++|++++|.....++.+. .+|+.|++
T Consensus 115 e~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i~LP~~LP--~SLk~L~l 184 (426)
T PRK15386 115 RSLEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNIILPEKLP--ESLQSITL 184 (426)
T ss_pred ceEEeCCCCCcccccCcc------hHhheecccccccccccccccc--CCcccEEEecCCCcccCccccc--ccCcEEEe
Confidence 77888877654 5554 45667765433 11 222111 1589999999988765554443 58999999
Q ss_pred cCCC
Q 001385 274 FGNP 277 (1088)
Q Consensus 274 s~N~ 277 (1088)
+.|.
T Consensus 185 s~n~ 188 (426)
T PRK15386 185 HIEQ 188 (426)
T ss_pred cccc
Confidence 8774
No 109
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.80 E-value=2.2e-05 Score=60.51 Aligned_cols=37 Identities=35% Similarity=0.573 Sum_probs=17.5
Q ss_pred CccEEEccCCCCCCccccccCCCCCcEEEccCCCCCC
Q 001385 175 TVTAVSLCGLGLSALPVDLTRLPVLEKLYLDNNKLST 211 (1088)
Q Consensus 175 ~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~N~l~~ 211 (1088)
+|++|+|++|+|+.+|..+.+|++|++|++++|+|+.
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence 4455555555555554444555555555555555443
No 110
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.78 E-value=2.5e-05 Score=60.24 Aligned_cols=38 Identities=42% Similarity=0.651 Sum_probs=20.9
Q ss_pred CCcEEEccCCCCCCCchhhcCCCCCcEEEccCCcCccc
Q 001385 198 VLEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNMLVCV 235 (1088)
Q Consensus 198 ~L~~L~L~~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~l 235 (1088)
+|++|++++|+|+.+|..+.+|++|++|++++|+|+.+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 45566666666665555555566666666665555544
No 111
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.73 E-value=0.00018 Score=88.09 Aligned_cols=144 Identities=22% Similarity=0.242 Sum_probs=123.9
Q ss_pred hhhhHHHHhccccCCchhhHHHHHCCCcHHHHHHhccCChHHHHHHHHHHHhhhccChHHHHHHhhhhhHHHHHHHhcCC
Q 001385 384 VVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHK 463 (1088)
Q Consensus 384 v~~~a~~~L~~L~~~~~~~~~l~~~~~~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd~~~~~v~~~g~lp~L~~Ll~~~ 463 (1088)
+..-++..|.|++.+......+++.|++..|+.+|.+.+.+.+..+..+|.+|....+ ....+.+.|++++|.+++.++
T Consensus 265 Llrv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~E-NK~~m~~~giV~kL~kLl~s~ 343 (708)
T PF05804_consen 265 LLRVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKE-NKDEMAESGIVEKLLKLLPSE 343 (708)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH-HHHHHHHcCCHHHHHHHhcCC
Confidence 4456677899999998888888999999999999999988888889999999996655 466788999999999999999
Q ss_pred ChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcCCchhHHHHHHHHHHhhcchHHHHHhhh
Q 001385 464 NPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGENESLRRAIR 531 (1088)
Q Consensus 464 ~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~r~~~~ 531 (1088)
+...+..|++.+.|+.|..+.|.+++ +.|++|.|+.++...+ .+.-+...+.+++.++..|..+.
T Consensus 344 ~~~l~~~aLrlL~NLSfd~~~R~~mV-~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~ 408 (708)
T PF05804_consen 344 NEDLVNVALRLLFNLSFDPELRSQMV-SLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFA 408 (708)
T ss_pred CHHHHHHHHHHHHHhCcCHHHHHHHH-HCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHh
Confidence 99999999999999999999988877 9999999999997654 45557788888888877665543
No 112
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=2e-06 Score=91.02 Aligned_cols=158 Identities=18% Similarity=0.136 Sum_probs=118.7
Q ss_pred hhcCCCCCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCC-CccccccCCCCccEEEccCCCCC--Ccccccc-
Q 001385 119 RVVKRREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNN-MGSGFCDHWKTVTAVSLCGLGLS--ALPVDLT- 194 (1088)
Q Consensus 119 ~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~~~~~~~~l~~L~~L~Ls~n~l~--~lp~~l~- 194 (1088)
..++.+.+|+.|.|.++++.+.+...+.+-.+|+.|||+.+..++. .....+..++.|..|+|+.|.+. .+...+.
T Consensus 204 ~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~h 283 (419)
T KOG2120|consen 204 GILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAH 283 (419)
T ss_pred HHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhh
Confidence 4567788999999999999988888899999999999999873333 23446788999999999999877 1111122
Q ss_pred CCCCCcEEEccCCCCC----CCchhhcCCCCCcEEEccCCc-Cc-ccchhccCCCCCCEEEeccCCCCCCc--ccccCCc
Q 001385 195 RLPVLEKLYLDNNKLS----TLPPELGAMKNLKVLIVDNNM-LV-CVPVELRECVGLVELSLEHNRLVRPL--LDFRAMA 266 (1088)
Q Consensus 195 ~l~~L~~L~L~~N~l~----~lp~~l~~l~~L~~L~Ls~N~-l~-~lp~~l~~l~~L~~L~Ls~N~l~~~~--~~l~~l~ 266 (1088)
--++|..|+|+++.=. .+..-..++++|..|||++|. ++ ..-..|.+++.|++|.++.|..-... -.+...+
T Consensus 284 ise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~p 363 (419)
T KOG2120|consen 284 ISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKP 363 (419)
T ss_pred hchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCc
Confidence 1257889999986432 333334689999999999875 44 44457788999999999988643211 2578899
Q ss_pred cccEEEecCC
Q 001385 267 ELKILRLFGN 276 (1088)
Q Consensus 267 ~L~~L~Ls~N 276 (1088)
+|.+|++.++
T Consensus 364 sl~yLdv~g~ 373 (419)
T KOG2120|consen 364 SLVYLDVFGC 373 (419)
T ss_pred ceEEEEeccc
Confidence 9999998775
No 113
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.71 E-value=0.00011 Score=83.94 Aligned_cols=133 Identities=23% Similarity=0.219 Sum_probs=84.6
Q ss_pred cccCccccEEeCcCCCCCCCCccccccCCCCccEEEccC-CCCCCccccccCCCCCcEEEccCC-CCCCCchhhcCCCCC
Q 001385 145 IGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCG-LGLSALPVDLTRLPVLEKLYLDNN-KLSTLPPELGAMKNL 222 (1088)
Q Consensus 145 l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~-n~l~~lp~~l~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L 222 (1088)
+..+.+++.|++++|. +. .+|. -..+|++|++++ +.++.+|..+ ..+|++|++++| .+..+|. +|
T Consensus 48 ~~~~~~l~~L~Is~c~-L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDCD-IE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SV 114 (426)
T ss_pred HHHhcCCCEEEeCCCC-Cc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------cc
Confidence 4456889999999886 33 2342 224689999987 4567777655 357899999988 6667764 46
Q ss_pred cEEEccCCcCc---ccchhccCCCCCCEEEeccCCCCCCccccc-CC-ccccEEEecCCCCCCCcc-ccCCCCCCeEEee
Q 001385 223 KVLIVDNNMLV---CVPVELRECVGLVELSLEHNRLVRPLLDFR-AM-AELKILRLFGNPLEFLPE-ILPLLKLRHLSLA 296 (1088)
Q Consensus 223 ~~L~Ls~N~l~---~lp~~l~~l~~L~~L~Ls~N~l~~~~~~l~-~l-~~L~~L~Ls~N~l~~l~~-l~~l~~L~~L~L~ 296 (1088)
+.|++.+|.+. .+|. +|+.|.+.+++.... ..+. .+ ++|++|++++|....+|. +. .+|+.|+++
T Consensus 115 e~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~-~~lp~~LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls 185 (426)
T PRK15386 115 RSLEIKGSATDSIKNVPN------GLTSLSINSYNPENQ-ARIDNLISPSLKTLSLTGCSNIILPEKLP--ESLQSITLH 185 (426)
T ss_pred ceEEeCCCCCcccccCcc------hHhheeccccccccc-cccccccCCcccEEEecCCCcccCccccc--ccCcEEEec
Confidence 77777776643 4553 456666654331110 0111 12 578999998887665442 22 588888887
Q ss_pred CCC
Q 001385 297 NIR 299 (1088)
Q Consensus 297 ~N~ 299 (1088)
.|.
T Consensus 186 ~n~ 188 (426)
T PRK15386 186 IEQ 188 (426)
T ss_pred ccc
Confidence 764
No 114
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.68 E-value=7.6e-05 Score=92.23 Aligned_cols=136 Identities=14% Similarity=0.205 Sum_probs=99.0
Q ss_pred CCCCcEEEccCCCCC--CCchhh-cCCCCCcEEEccCCcCc--ccchhccCCCCCCEEEeccCCCCCCcccccCCccccE
Q 001385 196 LPVLEKLYLDNNKLS--TLPPEL-GAMKNLKVLIVDNNMLV--CVPVELRECVGLVELSLEHNRLVRPLLDFRAMAELKI 270 (1088)
Q Consensus 196 l~~L~~L~L~~N~l~--~lp~~l-~~l~~L~~L~Ls~N~l~--~lp~~l~~l~~L~~L~Ls~N~l~~~~~~l~~l~~L~~ 270 (1088)
-.+|++|++++...- .-|..+ ..||.|+.|.+++-.+. .+-.-..++++|..||+|+.+++.+ ..+++|++|+.
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV 199 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence 357899999886543 333344 36899999999886665 4445567889999999999988776 56888999999
Q ss_pred EEecCCCCC---CCccccCCCCCCeEEeeCCCCCCCcccc--chhhhhcCcCCccccccccchhhhH
Q 001385 271 LRLFGNPLE---FLPEILPLLKLRHLSLANIRIVADENLR--SVNVQIEMENNSYFGASRHKLSAFF 332 (1088)
Q Consensus 271 L~Ls~N~l~---~l~~l~~l~~L~~L~L~~N~l~~~~~l~--~l~~~~~l~~l~~l~l~~n~l~~~~ 332 (1088)
|.+.+=.++ .+..+.++++|+.||+|.........+. .+++...|++|++||.+++.+....
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~ 266 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEI 266 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHH
Confidence 988776666 3447888999999999988776643221 1223334888999999988776643
No 115
>cd00147 cPLA2_like Cytosolic phospholipase A2, catalytic domain; hydrolyses arachidonyl phospholipids. Catalytic domain of cytosolic phospholipase A2 (PLA2; EC 3.1.1.4) hydrolyzes the sn-2-acyl ester bond of phospholipids to release arachidonic acid. At the active site, cPLA2 contains a serine nucleophile through which the catalytic mechanism is initiated. The active site is partially covered by a solvent-accessible flexible lid. cPLA2 displays interfacial activation as it exists in both "closed lid" and "open lid" forms. Movement of the cPLA2 lid possibly exposes a greater hydrophobic surface and the active site. cPLA2 belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Calcium is required for cPLA2 to bind with membranes or phospholipids. Group IV cPLA2 includes six intercellular enzymes: cPLA2alpha, cPLA2beta, cPLA2gamma, cPLA2delta, cP
Probab=97.66 E-value=0.00087 Score=77.83 Aligned_cols=63 Identities=16% Similarity=0.232 Sum_probs=49.8
Q ss_pred CCCceEEEecCCCchH-HHHHHHHHHHHHhcCCCCCcccceEEecchHHH-HHHHHhcCCCCHHHHHH
Q 001385 537 KQGLRILSMDGGGMKG-LATVQILKEIEKGTGKRIHELFDLVCGTSTGGM-LAIALAVKLMTLDQCEE 602 (1088)
Q Consensus 537 ~~~~riLsLdGGG~RG-~~~~~vL~~Le~~~~~~i~~~FDli~GTStG~i-iA~~l~~~~~s~~e~~~ 602 (1088)
..+.-.|+++|||.|+ ++++|+|++|++. .+.+.+++|+|+|.|+. ++.+++-...+++++.+
T Consensus 40 ~~p~i~~~~sGGG~Ra~~~~~G~l~~l~~~---gll~~~~yisg~Sgg~w~~~~~~~~~~~~~~~l~~ 104 (438)
T cd00147 40 EVPVIAILGSGGGYRAMTGGAGALKALDEG---GLLDCVTYLSGLSGSTWLMASLYSNPDWSQKDLDE 104 (438)
T ss_pred cCceEEEEecCchHHHHHhhhHHHHHHHhC---CchhccceeeeccchHHHHHHHHHcCCCChhhhhh
Confidence 3356789999999999 7799999999985 67888999999999995 45555555556656543
No 116
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.62 E-value=3.1e-05 Score=95.64 Aligned_cols=128 Identities=17% Similarity=0.243 Sum_probs=76.6
Q ss_pred CCccEEEccCCCCC--Ccccccc-CCCCCcEEEccCCCCC--CCchhhcCCCCCcEEEccCCcCcccchhccCCCCCCEE
Q 001385 174 KTVTAVSLCGLGLS--ALPVDLT-RLPVLEKLYLDNNKLS--TLPPELGAMKNLKVLIVDNNMLVCVPVELRECVGLVEL 248 (1088)
Q Consensus 174 ~~L~~L~Ls~n~l~--~lp~~l~-~l~~L~~L~L~~N~l~--~lp~~l~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L 248 (1088)
.+|++||+++...- .-|..++ .||+|+.|.+++-.+. .+..-..++++|..||+++.+++.+ .++++|++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 45666666664422 2233333 4567777777665554 2223335667777777777777666 566777777777
Q ss_pred EeccCCCCCCc--ccccCCccccEEEecCCCCCC--------CccccCCCCCCeEEeeCCCCCC
Q 001385 249 SLEHNRLVRPL--LDFRAMAELKILRLFGNPLEF--------LPEILPLLKLRHLSLANIRIVA 302 (1088)
Q Consensus 249 ~Ls~N~l~~~~--~~l~~l~~L~~L~Ls~N~l~~--------l~~l~~l~~L~~L~L~~N~l~~ 302 (1088)
.+.+=.+.... .++.+|++|+.||+|...... +..-..+++|+.||.+++.+..
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 66665554322 356677777777777655431 1122357788888888776664
No 117
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.48 E-value=0.00069 Score=83.12 Aligned_cols=172 Identities=19% Similarity=0.232 Sum_probs=138.6
Q ss_pred cccccccceeeccCChhhhhhHHHHhccccCCchhhHHHHHCCCcHHHHHHhccCChHHHHHHHHHHHhhhccChHHHHH
Q 001385 367 ENAVRQLISMISSDNRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQK 446 (1088)
Q Consensus 367 ~~~Lp~L~~L~Ls~N~~v~~~a~~~L~~L~~~~~~~~~l~~~~~~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd~~~~~ 446 (1088)
.+.++.|..+.-+.|..+...++..|.+|+-...+...+.+.|+++.|..++.+...+.+..++..|.+|.|..+ ....
T Consensus 289 ~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~-~R~~ 367 (708)
T PF05804_consen 289 KGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPE-LRSQ 367 (708)
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHH-HHHH
Confidence 355677777777888888888999999999998888889999999999999998888888889999999996554 4678
Q ss_pred HhhhhhHHHHHHHhcCCChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhh-cCCchhHHHHHHHHHHhhcchHH
Q 001385 447 MLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLT-VGPEPRVNKAAARALAILGENES 525 (1088)
Q Consensus 447 v~~~g~lp~L~~Ll~~~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll-~~~~~~v~~~a~~aL~~l~~~~~ 525 (1088)
++..|++|.|+.|+...+ .+..++..+.|+....+.+..+. ..+.++.++.++ ..+++++..++.+.+.+++.++.
T Consensus 368 mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~-~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~r 444 (708)
T PF05804_consen 368 MVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFA-YTDCIPQLMQMLLENSEEEVQLELIALLINLALNKR 444 (708)
T ss_pred HHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHh-hcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHH
Confidence 999999999999998754 34457888999988887777655 556778887754 55677788888888888888887
Q ss_pred HHHhhhcCCCCCCCceEEEecCCCchHHHHH
Q 001385 526 LRRAIRGRQVPKQGLRILSMDGGGMKGLATV 556 (1088)
Q Consensus 526 ~r~~~~~~~~~~~~~riLsLdGGG~RG~~~~ 556 (1088)
..+.+- .|||.+.++..
T Consensus 445 naqlm~--------------~g~gL~~L~~r 461 (708)
T PF05804_consen 445 NAQLMC--------------EGNGLQSLMKR 461 (708)
T ss_pred HHHHHH--------------hcCcHHHHHHH
Confidence 666554 67776665543
No 118
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.35 E-value=7.7e-05 Score=78.70 Aligned_cols=103 Identities=28% Similarity=0.352 Sum_probs=51.8
Q ss_pred cccCCCCccEEEccCCCCCCccccccCCCCCcEEEccCC--CCC-CCchhhcCCCCCcEEEccCCcCcccc--hhccCCC
Q 001385 169 FCDHWKTVTAVSLCGLGLSALPVDLTRLPVLEKLYLDNN--KLS-TLPPELGAMKNLKVLIVDNNMLVCVP--VELRECV 243 (1088)
Q Consensus 169 ~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~N--~l~-~lp~~l~~l~~L~~L~Ls~N~l~~lp--~~l~~l~ 243 (1088)
....+..|+.|++.+..++++- .+-.|++|++|.++.| ++. .++.....+++|++|++++|+|..+. ..+..+.
T Consensus 38 l~d~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~ 116 (260)
T KOG2739|consen 38 LTDEFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELE 116 (260)
T ss_pred ccccccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhc
Confidence 3334455555555555555432 3345566666666666 332 33333344466666666666655211 1334455
Q ss_pred CCCEEEeccCCCCCCcc----cccCCccccEEE
Q 001385 244 GLVELSLEHNRLVRPLL----DFRAMAELKILR 272 (1088)
Q Consensus 244 ~L~~L~Ls~N~l~~~~~----~l~~l~~L~~L~ 272 (1088)
+|..|++.+|..+.+.. .|.-+++|++|+
T Consensus 117 nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 117 NLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred chhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence 55566666655554331 144445555544
No 119
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.33 E-value=0.0015 Score=70.67 Aligned_cols=167 Identities=22% Similarity=0.273 Sum_probs=130.3
Q ss_pred cccccccccceeecc----CChhhhhhHHHHhccccCCchhhHHHHHCCCcHHHHHHhc--cCChHHHHHHHHHHHhhhc
Q 001385 365 KDENAVRQLISMISS----DNRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLK--SFAPEEVKSVLQVVGQLAF 438 (1088)
Q Consensus 365 ~~~~~Lp~L~~L~Ls----~N~~v~~~a~~~L~~L~~~~~~~~~l~~~~~~~~Ll~lL~--~~~~~~~~~~l~~L~~L~~ 438 (1088)
.+.|.+..|..+.-. +|+.+..+.+..|..|++..+....+++.|+.+.+++++. ..+|.++...+.++.-|++
T Consensus 280 ~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~L 359 (461)
T KOG4199|consen 280 AESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCL 359 (461)
T ss_pred HHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHh
Confidence 344666666665333 4445667889999999999999999999999999988764 4557777889999999999
Q ss_pred cChHHHHHHhhhhhHHHHHHHhc-CC-ChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcCCchhHHHHHHHH
Q 001385 439 ASDTVAQKMLTKDVLKSLKLLCA-HK-NPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARA 516 (1088)
Q Consensus 439 ~sd~~~~~v~~~g~lp~L~~Ll~-~~-~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~~~~~v~~~a~~a 516 (1088)
.+.......++.|+--.-+.-++ ++ ...||+.|++++.|++....+.+...+..|+ +-|++......+.....|..+
T Consensus 360 R~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~Gi-E~Li~~A~~~h~tce~~akaA 438 (461)
T KOG4199|consen 360 RSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANGI-EKLIRTAKANHETCEAAAKAA 438 (461)
T ss_pred cCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhccH-HHHHHHHHhcCccHHHHHHHH
Confidence 88888888899886444444333 43 4579999999999999888888887777777 455666677888888889999
Q ss_pred HHhhcchHHHHHhhhc
Q 001385 517 LAILGENESLRRAIRG 532 (1088)
Q Consensus 517 L~~l~~~~~~r~~~~~ 532 (1088)
|.-++.+.++|..-.+
T Consensus 439 LRDLGc~v~lre~wtg 454 (461)
T KOG4199|consen 439 LRDLGCDVYLREEWTG 454 (461)
T ss_pred HHhcCcchhhHHHhcc
Confidence 9999999998887654
No 120
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=97.23 E-value=0.0015 Score=78.59 Aligned_cols=118 Identities=24% Similarity=0.284 Sum_probs=101.1
Q ss_pred HHHHHhccCChHHHHHHHHHHHhhhccChHHHHHHhhhhhHHHHHHHhcCCChhHHHHHHHHHhhhhccccc--cceeec
Q 001385 413 PIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLEN--RRILVT 490 (1088)
Q Consensus 413 ~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd~~~~~v~~~g~lp~L~~Ll~~~~~~vq~~Al~algnla~~~~~--~~~~v~ 490 (1088)
..+.+|.+..+..+.++...+.+++|.++.....+-..|.+|.|+.|+.+.+.+||+.|+.|+.|+.|+..+ -...+.
T Consensus 237 e~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~ 316 (717)
T KOG1048|consen 237 EVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIK 316 (717)
T ss_pred HHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhh
Confidence 345566777788899999999999999999988999999999999999999999999999999999999977 333445
Q ss_pred ccChhhhhHhhhcC-CchhHHHHHHHHHHhhcchHHHHHhh
Q 001385 491 SESLRDLLMRLTVG-PEPRVNKAAARALAILGENESLRRAI 530 (1088)
Q Consensus 491 ~~~~~~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~~r~~~ 530 (1088)
+++.++.+++++.. .+.++++.+...+-++..+..++..+
T Consensus 317 ~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~i 357 (717)
T KOG1048|consen 317 ELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLI 357 (717)
T ss_pred hcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHH
Confidence 88888999998875 78899999999999999886555543
No 121
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=97.22 E-value=0.0025 Score=76.92 Aligned_cols=215 Identities=17% Similarity=0.159 Sum_probs=162.5
Q ss_pred cccccceeeccCChhhhhhHHHHhccccCCchhh-HHHHHCCCcHHHHHHhccCChHHHHHHHHHHHhhhccChHHHHHH
Q 001385 369 AVRQLISMISSDNRHVVEQACSALSSLAGDVSVA-MLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKM 447 (1088)
Q Consensus 369 ~Lp~L~~L~Ls~N~~v~~~a~~~L~~L~~~~~~~-~~l~~~~~~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd~~~~~v 447 (1088)
..+.|....-+.++.|+..+++.++++..+.... ..+.+.+++..++.++.+++.++...+..+|..++. .....+.+
T Consensus 78 ~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~-~~~~~~~l 156 (503)
T PF10508_consen 78 YQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLAS-HPEGLEQL 156 (503)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhC-CchhHHHH
Confidence 3455666677889999999999999999888776 778889999999999999989988999999999995 45566778
Q ss_pred hhhhhHHHHHHHhcCCChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcCCchhHHHHHHHHHHhhcchHHHH
Q 001385 448 LTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGENESLR 527 (1088)
Q Consensus 448 ~~~g~lp~L~~Ll~~~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~r 527 (1088)
|+.+.++.|..++...+..++..++..+.+++..+++-.+.+.+.|+++.++..+...+.-++..+...+..++..+..
T Consensus 157 ~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g- 235 (503)
T PF10508_consen 157 FDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHG- 235 (503)
T ss_pred hCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhH-
Confidence 9999999999999987878888889999999999988889898999999999999998888999999999998876533
Q ss_pred HhhhcCCCCCCCceEEEecCCCchHHHHHHHHHHHHHhcCCCCCcc-cc--eEEecchHHHHHHHHhcCCCCHHHHHHHH
Q 001385 528 RAIRGRQVPKQGLRILSMDGGGMKGLATVQILKEIEKGTGKRIHEL-FD--LVCGTSTGGMLAIALAVKLMTLDQCEEIY 604 (1088)
Q Consensus 528 ~~~~~~~~~~~~~riLsLdGGG~RG~~~~~vL~~Le~~~~~~i~~~-FD--li~GTStG~iiA~~l~~~~~s~~e~~~~y 604 (1088)
..-+...|+++.|.+.+...-.+. +. ++.|. +...=....++..++.+.|
T Consensus 236 ----------------------~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~-----~~f~g~la~~~~~~v~~~~ 288 (503)
T PF10508_consen 236 ----------------------LQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGR-----MKFFGNLARVSPQEVLELY 288 (503)
T ss_pred ----------------------HHHHHhCCHHHHHHHHHhccccCCcccchhhhhH-----HHHHHHHHhcChHHHHHHH
Confidence 444555566666655432111111 11 12222 1111001113677788888
Q ss_pred HHhhcccc
Q 001385 605 KNLGKLVF 612 (1088)
Q Consensus 605 ~~~~~~iF 612 (1088)
..+-..+|
T Consensus 289 p~~~~~l~ 296 (503)
T PF10508_consen 289 PAFLERLF 296 (503)
T ss_pred HHHHHHHH
Confidence 87777776
No 122
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.16 E-value=0.00019 Score=75.89 Aligned_cols=62 Identities=29% Similarity=0.344 Sum_probs=28.7
Q ss_pred CCCCCCEEEeccC--CCCCCc-ccccCCccccEEEecCCCCCC---CccccCCCCCCeEEeeCCCCCC
Q 001385 241 ECVGLVELSLEHN--RLVRPL-LDFRAMAELKILRLFGNPLEF---LPEILPLLKLRHLSLANIRIVA 302 (1088)
Q Consensus 241 ~l~~L~~L~Ls~N--~l~~~~-~~l~~l~~L~~L~Ls~N~l~~---l~~l~~l~~L~~L~L~~N~l~~ 302 (1088)
.|++|+.|.++.| ++++-. .-...+++|++|+|++|+|.. ++.+..+.+|..|++.+|..+.
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTN 130 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccc
Confidence 3444555555555 222211 122333555555555555542 2233444555566666655554
No 123
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.00 E-value=4.8e-05 Score=80.11 Aligned_cols=77 Identities=26% Similarity=0.284 Sum_probs=35.3
Q ss_pred CcEEEccCCCCCCCchhhcCCCCCcEEEccCCcCcccchhccCCCCCCEEEeccCCCCCCcc--cccCCccccEEEecCC
Q 001385 199 LEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVELRECVGLVELSLEHNRLVRPLL--DFRAMAELKILRLFGN 276 (1088)
Q Consensus 199 L~~L~L~~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~~~~--~l~~l~~L~~L~Ls~N 276 (1088)
.+.|++.++.|+.+. ...+|+.|++|.|+-|+|+++ ..+..|++|++|+|..|.|..+.+ -+.++++|+.|+|..|
T Consensus 21 vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~EN 98 (388)
T KOG2123|consen 21 VKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDEN 98 (388)
T ss_pred hhhhcccCCCccHHH-HHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccC
Confidence 344444444444331 123444444444444444444 234444555555555555544432 2455555555555555
Q ss_pred C
Q 001385 277 P 277 (1088)
Q Consensus 277 ~ 277 (1088)
.
T Consensus 99 P 99 (388)
T KOG2123|consen 99 P 99 (388)
T ss_pred C
Confidence 4
No 124
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=96.99 E-value=0.0014 Score=49.72 Aligned_cols=39 Identities=33% Similarity=0.357 Sum_probs=36.1
Q ss_pred hHHHHHHhhhhhHHHHHHHhcCCChhHHHHHHHHHhhhh
Q 001385 441 DTVAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLA 479 (1088)
Q Consensus 441 d~~~~~v~~~g~lp~L~~Ll~~~~~~vq~~Al~algnla 479 (1088)
+...+.+++.|++|.|..|+.+.+..+|+.|+++++|++
T Consensus 2 ~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 2 PENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 456778999999999999999999999999999999986
No 125
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.79 E-value=6.9e-05 Score=78.93 Aligned_cols=79 Identities=28% Similarity=0.143 Sum_probs=35.5
Q ss_pred CCcEEEccCCcCcccchhccCCCCCCEEEeccCCCCCCcccccCCccccEEEecCCCCCCCcc---ccCCCCCCeEEeeC
Q 001385 221 NLKVLIVDNNMLVCVPVELRECVGLVELSLEHNRLVRPLLDFRAMAELKILRLFGNPLEFLPE---ILPLLKLRHLSLAN 297 (1088)
Q Consensus 221 ~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~~~~~l~~l~~L~~L~Ls~N~l~~l~~---l~~l~~L~~L~L~~ 297 (1088)
+.+.|++-++.|+.|. ...+|+.|+.|.|+-|+|+.+ ..|..|++|+.|+|..|.|..+.+ +.++++|++|.|..
T Consensus 20 ~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~E 97 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDE 97 (388)
T ss_pred HhhhhcccCCCccHHH-HHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhcc
Confidence 3344444444444331 223444555555555554433 234444455555555555443332 23444455555554
Q ss_pred CCCC
Q 001385 298 IRIV 301 (1088)
Q Consensus 298 N~l~ 301 (1088)
|+-.
T Consensus 98 NPCc 101 (388)
T KOG2123|consen 98 NPCC 101 (388)
T ss_pred CCcc
Confidence 4433
No 126
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.61 E-value=0.013 Score=63.63 Aligned_cols=143 Identities=15% Similarity=0.196 Sum_probs=114.7
Q ss_pred ChhhhhhHHHHhccccCCchhhHHHHHCCCcHHHHHHhccCCh----HHHHHHHHHHHhhhccChHHHHHHhhhhhHHHH
Q 001385 381 NRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAP----EEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSL 456 (1088)
Q Consensus 381 N~~v~~~a~~~L~~L~~~~~~~~~l~~~~~~~~Ll~lL~~~~~----~~~~~~l~~L~~L~~~sd~~~~~v~~~g~lp~L 456 (1088)
.+.+..+.+.+|+.|+...+.|..+.+.|++..+++++.+++. .....++..|..|+ ++|.....+++.|..+.+
T Consensus 255 dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralA-G~DsvKs~IV~~gg~~~i 333 (461)
T KOG4199|consen 255 DPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALA-GSDSVKSTIVEKGGLDKI 333 (461)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHh-CCCchHHHHHHhcChHHH
Confidence 3677788889999999988889999999999999999987553 23355788888888 888888889999999999
Q ss_pred HHHhc--CCChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhc-CC-chhHHHHHHHHHHhhcchH
Q 001385 457 KLLCA--HKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTV-GP-EPRVNKAAARALAILGENE 524 (1088)
Q Consensus 457 ~~Ll~--~~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~-~~-~~~v~~~a~~aL~~l~~~~ 524 (1088)
+.|+. +.++.|-..++.++.-++.-...-....++.|+.+..+..+. ++ ...|+++|||.+.++..+.
T Consensus 334 i~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs 405 (461)
T KOG4199|consen 334 ITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRS 405 (461)
T ss_pred HHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhh
Confidence 99866 467777777778888888777666666669999888877664 33 3468999999999887553
No 127
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.32 E-value=4.1e-05 Score=90.66 Aligned_cols=176 Identities=22% Similarity=0.190 Sum_probs=100.7
Q ss_pred ccEEEeeCCCCCCCCc----cccccCccccEEeCcCCCCCCCCc---cccccCC-CCccEEEccCCCCC-----Cccccc
Q 001385 127 LRAVVLTKGVGSGHLS----DGIGVLTRLMRSDLSTSGPGNNMG---SGFCDHW-KTVTAVSLCGLGLS-----ALPVDL 193 (1088)
Q Consensus 127 L~~L~Ls~n~i~~~~p----~~l~~l~~L~~L~Ls~N~l~~~~~---~~~~~~l-~~L~~L~Ls~n~l~-----~lp~~l 193 (1088)
+..|.|.+|.+..... ..+..+..|..|++++|.+..... ...+... ..|++|++..|.++ .+...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 6777888887765422 345566778888888887321111 1122222 45666777777766 344556
Q ss_pred cCCCCCcEEEccCCCCC-----CCchhhc----CCCCCcEEEccCCcCc-----ccchhccCCCC-CCEEEeccCCCCCC
Q 001385 194 TRLPVLEKLYLDNNKLS-----TLPPELG----AMKNLKVLIVDNNMLV-----CVPVELRECVG-LVELSLEHNRLVRP 258 (1088)
Q Consensus 194 ~~l~~L~~L~L~~N~l~-----~lp~~l~----~l~~L~~L~Ls~N~l~-----~lp~~l~~l~~-L~~L~Ls~N~l~~~ 258 (1088)
.....|+.|+++.|.+. .++..+. ...++++|++.+|.++ .+...+...+. +..|++..|++.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 66777777777777764 2223333 3666777777777665 22223344444 55567777766543
Q ss_pred c-----ccccCC-ccccEEEecCCCCCC-----Cc-cccCCCCCCeEEeeCCCCCC
Q 001385 259 L-----LDFRAM-AELKILRLFGNPLEF-----LP-EILPLLKLRHLSLANIRIVA 302 (1088)
Q Consensus 259 ~-----~~l~~l-~~L~~L~Ls~N~l~~-----l~-~l~~l~~L~~L~L~~N~l~~ 302 (1088)
. +.+..+ ..++.++++.|.|+. +. .+..+..++.|.+++|.+..
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 1 234444 456666666666651 11 23455566666666666654
No 128
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.78 E-value=0.023 Score=54.97 Aligned_cols=84 Identities=8% Similarity=0.135 Sum_probs=32.5
Q ss_pred hhcCCCCCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCccc-cccCCC
Q 001385 119 RVVKRREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPV-DLTRLP 197 (1088)
Q Consensus 119 ~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~-~l~~l~ 197 (1088)
.+|..+.+|+.+.+.. .+...-...|.++++|+.+++.++ +.......|..+.+|+.+.+.+ .+..++. .+..+.
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc-cccccccccccccc
Confidence 4555566666666553 233333344555555555555543 2333334444554555555543 3333332 233344
Q ss_pred CCcEEEccC
Q 001385 198 VLEKLYLDN 206 (1088)
Q Consensus 198 ~L~~L~L~~ 206 (1088)
+|+.+++..
T Consensus 82 ~l~~i~~~~ 90 (129)
T PF13306_consen 82 NLKNIDIPS 90 (129)
T ss_dssp TECEEEETT
T ss_pred cccccccCc
Confidence 555555443
No 129
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=95.74 E-value=0.034 Score=60.49 Aligned_cols=154 Identities=16% Similarity=0.130 Sum_probs=112.1
Q ss_pred ccccccccccccceeeccCChhhhhhHHHHhccccCCchhhHHHHHCCCcHHHHHH-hcc-CChHHHHHHHHHHHhhhcc
Q 001385 362 VVGKDENAVRQLISMISSDNRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAV-LKS-FAPEEVKSVLQVVGQLAFA 439 (1088)
Q Consensus 362 ~ip~~~~~Lp~L~~L~Ls~N~~v~~~a~~~L~~L~~~~~~~~~l~~~~~~~~Ll~l-L~~-~~~~~~~~~l~~L~~L~~~ 439 (1088)
.+..+.|.++-+..+.-..++.+++.|+++|.|++...++...+-. .+..+... +.. .+.+.+..++++|.++...
T Consensus 48 ~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~ 125 (254)
T PF04826_consen 48 DIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVT 125 (254)
T ss_pred HHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCC
Confidence 4556678899999999899999999999999999987777643322 23333332 222 2456778899999999865
Q ss_pred ChHHHHHHhhhhhHHHHHHHhcCCChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcCCc-hhHHHHHHHHHH
Q 001385 440 SDTVAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPE-PRVNKAAARALA 518 (1088)
Q Consensus 440 sd~~~~~v~~~g~lp~L~~Ll~~~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~~~-~~v~~~a~~aL~ 518 (1088)
++.. ..+ ...+|.|..|+.+++..+|..+++++.|++...+..+.++ .+.+..-|+.+....+ .++.-.+.+-..
T Consensus 126 ~~~~-~~l--~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll-~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ 201 (254)
T PF04826_consen 126 NDYH-HML--ANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRELL-SAQVLSSFLSLFNSSESKENLLRVLTFFE 201 (254)
T ss_pred cchh-hhH--HhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHHH-hccchhHHHHHHccCCccHHHHHHHHHHH
Confidence 5442 223 2469999999999999999999999999999888877776 6677778888877653 444555444444
Q ss_pred hhc
Q 001385 519 ILG 521 (1088)
Q Consensus 519 ~l~ 521 (1088)
++.
T Consensus 202 ni~ 204 (254)
T PF04826_consen 202 NIN 204 (254)
T ss_pred HHH
Confidence 443
No 130
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.73 E-value=0.00019 Score=85.10 Aligned_cols=181 Identities=22% Similarity=0.171 Sum_probs=115.9
Q ss_pred cccEEeCcCCCCCCCC---ccccccCCCCccEEEccCCCCC-----CccccccCC-CCCcEEEccCCCCC-----CCchh
Q 001385 150 RLMRSDLSTSGPGNNM---GSGFCDHWKTVTAVSLCGLGLS-----ALPVDLTRL-PVLEKLYLDNNKLS-----TLPPE 215 (1088)
Q Consensus 150 ~L~~L~Ls~N~l~~~~---~~~~~~~l~~L~~L~Ls~n~l~-----~lp~~l~~l-~~L~~L~L~~N~l~-----~lp~~ 215 (1088)
.+..|.|.+|.+.... +...+..+..|..|+|++|.+. .+-..+... ..|++|++..|.++ .+...
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 3788888888733322 2334556788888899998887 122233333 56777888888777 34556
Q ss_pred hcCCCCCcEEEccCCcCc-----ccchhcc----CCCCCCEEEeccCCCCCCc-----ccccCCcc-ccEEEecCCCCCC
Q 001385 216 LGAMKNLKVLIVDNNMLV-----CVPVELR----ECVGLVELSLEHNRLVRPL-----LDFRAMAE-LKILRLFGNPLEF 280 (1088)
Q Consensus 216 l~~l~~L~~L~Ls~N~l~-----~lp~~l~----~l~~L~~L~Ls~N~l~~~~-----~~l~~l~~-L~~L~Ls~N~l~~ 280 (1088)
+.....|+.|+++.|.+. .++..+. ...++++|++++|.++... ..+...+. +..|++.+|.+..
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 666788888888888874 2333333 4677888888888876432 12455555 6668888888762
Q ss_pred ------CccccCC-CCCCeEEeeCCCCCCCccccchhhhhcCcCCccccccccchhh
Q 001385 281 ------LPEILPL-LKLRHLSLANIRIVADENLRSVNVQIEMENNSYFGASRHKLSA 330 (1088)
Q Consensus 281 ------l~~l~~l-~~L~~L~L~~N~l~~~~~l~~l~~~~~l~~l~~l~l~~n~l~~ 330 (1088)
.+.+..+ ..++.++++.|.|+....-.--.+...+..++.+.+..|.+..
T Consensus 248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 2234445 5778888888888764222222223345667777777777654
No 131
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=95.72 E-value=0.029 Score=67.87 Aligned_cols=145 Identities=17% Similarity=0.132 Sum_probs=121.5
Q ss_pred ccccccccccccceeeccCChhhhhhHHHHhccccCCchhhHHHHHCCCcHHHHHHhccCChHHHHHHHHHHHhhhccCh
Q 001385 362 VVGKDENAVRQLISMISSDNRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASD 441 (1088)
Q Consensus 362 ~ip~~~~~Lp~L~~L~Ls~N~~v~~~a~~~L~~L~~~~~~~~~l~~~~~~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd 441 (1088)
.+....+-++.+..+.-..+..+...|+.+|.+++........++..+....|..++...+...+..++.++.+++..++
T Consensus 113 ~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~ 192 (503)
T PF10508_consen 113 QLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSP 192 (503)
T ss_pred HHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCH
Confidence 33344455777777888888999999999999999988777888888888888888877666677779999999998999
Q ss_pred HHHHHHhhhhhHHHHHHHhcCCChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcCCch
Q 001385 442 TVAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEP 507 (1088)
Q Consensus 442 ~~~~~v~~~g~lp~L~~Ll~~~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~~~~ 507 (1088)
.....+.+.|+++.+...+.+.+.-+|..++..+..++..... .+.+.+.|+++.|..++...+.
T Consensus 193 ~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g-~~yL~~~gi~~~L~~~l~~~~~ 257 (503)
T PF10508_consen 193 EAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHG-LQYLEQQGIFDKLSNLLQDSEE 257 (503)
T ss_pred HHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhH-HHHHHhCCHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999999999995555 5555688999999988765543
No 132
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.64 E-value=0.079 Score=58.91 Aligned_cols=139 Identities=17% Similarity=0.140 Sum_probs=112.8
Q ss_pred hhhhhHHHHhccccCCchhhHHHHHCCCcHHHHHHhccCChHHHHHHHHHHHhhhccChHHHHHHhhhhhHHHHHHHhcC
Q 001385 383 HVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAH 462 (1088)
Q Consensus 383 ~v~~~a~~~L~~L~~~~~~~~~l~~~~~~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd~~~~~v~~~g~lp~L~~Ll~~ 462 (1088)
.-.+.++..|..+..+..+...++..|+..+++..+++.+.+....++++++..+-.+......+++.|+++.|...+.+
T Consensus 98 e~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~ 177 (342)
T KOG2160|consen 98 EDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSS 177 (342)
T ss_pred HHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHcc
Confidence 44556667777777777777899999999999999999999988999999999997777777889999999999998886
Q ss_pred C-ChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcC--CchhHHHHHHHHHHhhc
Q 001385 463 K-NPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVG--PEPRVNKAAARALAILG 521 (1088)
Q Consensus 463 ~-~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~--~~~~v~~~a~~aL~~l~ 521 (1088)
. ...+++.|+.|++.+.......+......+....|...+.. .+...+..+..-++.+.
T Consensus 178 ~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll 239 (342)
T KOG2160|consen 178 DDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLL 239 (342)
T ss_pred CCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHH
Confidence 4 45788999999999988887776666677778999999988 55566666665555554
No 133
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.47 E-value=0.036 Score=53.54 Aligned_cols=103 Identities=14% Similarity=0.254 Sum_probs=43.5
Q ss_pred ccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCccc-cccCCCCCcEEEccCCCCCCCc-hhhcCCCC
Q 001385 144 GIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPV-DLTRLPVLEKLYLDNNKLSTLP-PELGAMKN 221 (1088)
Q Consensus 144 ~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~N~l~~lp-~~l~~l~~ 221 (1088)
.|.++.+|+.+.+..+ ...+....|..+.+|+.+.+.++ +..++. .+.++.+|+.+.+.+ .+..++ ..|..+++
T Consensus 7 ~F~~~~~l~~i~~~~~--~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 7 AFYNCSNLESITFPNT--IKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTT-TT--EEEETST----EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHhCCCCCCEEEECCC--eeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 4555666666666543 23444455666666666666554 555553 344555666666654 333332 23444566
Q ss_pred CcEEEccCCcCcccch-hccCCCCCCEEEecc
Q 001385 222 LKVLIVDNNMLVCVPV-ELRECVGLVELSLEH 252 (1088)
Q Consensus 222 L~~L~Ls~N~l~~lp~-~l~~l~~L~~L~Ls~ 252 (1088)
|+.+++..+ +..++. .+.++ +|+.+.+..
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 666666543 443333 23443 555555543
No 134
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=95.09 E-value=0.099 Score=46.75 Aligned_cols=85 Identities=24% Similarity=0.353 Sum_probs=65.0
Q ss_pred HHHHHHh-ccCChHHHHHHHHHHHhhhccChHHHHHHhhhhhHHHHHHHhcCCChhHHHHHHHHHhhhhccccccceeec
Q 001385 412 QPIIAVL-KSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVT 490 (1088)
Q Consensus 412 ~~Ll~lL-~~~~~~~~~~~l~~L~~L~~~sd~~~~~v~~~g~lp~L~~Ll~~~~~~vq~~Al~algnla~~~~~~~~~v~ 490 (1088)
+.|+..+ ++.++..+..++.+|+++. +..++|.|..++.+.++.|+..|++++|.+.
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~-----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------- 59 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELG-----------DPEAIPALIELLKDEDPMVRRAAARALGRIG----------- 59 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCT-----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH-----------
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcC-----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----------
Confidence 5677777 6777888888888888553 2256899999999999999999999999762
Q ss_pred ccChhhhhHhhhcCCc-hhHHHHHHHHHH
Q 001385 491 SESLRDLLMRLTVGPE-PRVNKAAARALA 518 (1088)
Q Consensus 491 ~~~~~~~L~~ll~~~~-~~v~~~a~~aL~ 518 (1088)
+....+.|..++...+ ..++..|..+|+
T Consensus 60 ~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 3456788888777654 456788887764
No 135
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.90 E-value=0.13 Score=57.22 Aligned_cols=157 Identities=16% Similarity=0.178 Sum_probs=128.0
Q ss_pred cccccccceeeccCChhhhhhHHHHhccccCCchhh-HHHHHCCCcHHHHHHhccCChHHH-HHHHHHHHhhhccChHHH
Q 001385 367 ENAVRQLISMISSDNRHVVEQACSALSSLAGDVSVA-MLLMKCDIMQPIIAVLKSFAPEEV-KSVLQVVGQLAFASDTVA 444 (1088)
Q Consensus 367 ~~~Lp~L~~L~Ls~N~~v~~~a~~~L~~L~~~~~~~-~~l~~~~~~~~Ll~lL~~~~~~~~-~~~l~~L~~L~~~sd~~~ 444 (1088)
++.+.-|....-+.+..+++-|.+.+|.....++-. ..+++.|+.+.|+..+...++... ..+|-++..++.++....
T Consensus 123 ~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~ 202 (342)
T KOG2160|consen 123 LGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQ 202 (342)
T ss_pred ccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHH
Confidence 344555544555677889999999999999888888 899999999999999987666444 779999999998888888
Q ss_pred HHHhhhhhHHHHHHHhcC--CChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcCCchhHHHHHHHHHHhhcc
Q 001385 445 QKMLTKDVLKSLKLLCAH--KNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGE 522 (1088)
Q Consensus 445 ~~v~~~g~lp~L~~Ll~~--~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~ 522 (1088)
...+..+-..-|+..+.+ .+...|+.|+.-++++......-...+...++...++.+...-+.++++.+..++-..-.
T Consensus 203 ~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 203 DEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred HHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 888888779999999998 677888889999999988877777777777888888888888888899888877655443
Q ss_pred h
Q 001385 523 N 523 (1088)
Q Consensus 523 ~ 523 (1088)
.
T Consensus 283 ~ 283 (342)
T KOG2160|consen 283 E 283 (342)
T ss_pred H
Confidence 3
No 136
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=94.88 E-value=0.074 Score=59.75 Aligned_cols=160 Identities=22% Similarity=0.196 Sum_probs=113.3
Q ss_pred cccccccceeeccCChhhhhhHHHHhccccCCchhh-HHHHHCCCcHHHHHHhccCCh-------HHHHHHHHHHHhhhc
Q 001385 367 ENAVRQLISMISSDNRHVVEQACSALSSLAGDVSVA-MLLMKCDIMQPIIAVLKSFAP-------EEVKSVLQVVGQLAF 438 (1088)
Q Consensus 367 ~~~Lp~L~~L~Ls~N~~v~~~a~~~L~~L~~~~~~~-~~l~~~~~~~~Ll~lL~~~~~-------~~~~~~l~~L~~L~~ 438 (1088)
.+.+.-|+.+--|...++.++.+++|||+|.++.+. ..+.++|+-+-++..|+..+- +-....+..|.+...
T Consensus 86 a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l 165 (604)
T KOG4500|consen 86 AEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYIL 165 (604)
T ss_pred HHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhC
Confidence 345667777777888899999999999999999888 888999997777777764432 222446788889998
Q ss_pred cChHHHHHHhhhhhHHHHHHHhc--CCChhHHHHHHHHHhhhh-ccccccceeecccChhhhhHhhh-cCCchhHHHHHH
Q 001385 439 ASDTVAQKMLTKDVLKSLKLLCA--HKNPEVQRFALLAVGNLA-FCLENRRILVTSESLRDLLMRLT-VGPEPRVNKAAA 514 (1088)
Q Consensus 439 ~sd~~~~~v~~~g~lp~L~~Ll~--~~~~~vq~~Al~algnla-~~~~~~~~~v~~~~~~~~L~~ll-~~~~~~v~~~a~ 514 (1088)
.++.....+++.|+|+.|+.+.. ..+.+....-+.+.+|+. +..++-....-++++.-.+++++ ...++++.+...
T Consensus 166 ~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~f 245 (604)
T KOG4500|consen 166 DSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIF 245 (604)
T ss_pred CcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHH
Confidence 89988999999999999998865 334433222233345553 33333333444566666666655 455777888888
Q ss_pred HHHHhhcchHHH
Q 001385 515 RALAILGENESL 526 (1088)
Q Consensus 515 ~aL~~l~~~~~~ 526 (1088)
..++..+++..+
T Consensus 246 eila~~aend~V 257 (604)
T KOG4500|consen 246 EILAKAAENDLV 257 (604)
T ss_pred HHHHHHhcCcce
Confidence 888888877643
No 137
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=94.82 E-value=0.2 Score=56.40 Aligned_cols=118 Identities=17% Similarity=0.170 Sum_probs=93.7
Q ss_pred HHHHHCC-CcHHHHHHhccCChHHHHHHHHHHHhhhccChHHHHHHhhhhhHHHHHHHhcC-----CChhHHHHHHHHHh
Q 001385 403 MLLMKCD-IMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAH-----KNPEVQRFALLAVG 476 (1088)
Q Consensus 403 ~~l~~~~-~~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd~~~~~v~~~g~lp~L~~Ll~~-----~~~~vq~~Al~alg 476 (1088)
..++..+ +.+.++..+.+.+...+..+.-++++++- .|...-.+++.|.|..|.+++.. ++.++|..++.|+.
T Consensus 308 q~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR-~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALR 386 (604)
T KOG4500|consen 308 QKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFAR-RDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALR 386 (604)
T ss_pred HHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhc-cchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHH
Confidence 4455555 56666777777777888888889999994 55555567889999999998874 67899999999999
Q ss_pred hhhccccccceeecccChhhhhHhhhcCCchhHHHHHHHHHHhhcc
Q 001385 477 NLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGE 522 (1088)
Q Consensus 477 nla~~~~~~~~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~ 522 (1088)
|++....++..+. .+|+.+.++..+....++|...-...++++-.
T Consensus 387 nl~IPv~nka~~~-~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d 431 (604)
T KOG4500|consen 387 NLMIPVSNKAHFA-PAGVTEAILLQLKLASPPVTFKLLGTLRMIRD 431 (604)
T ss_pred hccccCCchhhcc-ccchHHHHHHHHHhcCCcchHHHHHHHHHHHh
Confidence 9999999999866 89999999998888888887666555555543
No 138
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=94.70 E-value=0.11 Score=49.44 Aligned_cols=123 Identities=17% Similarity=0.065 Sum_probs=99.2
Q ss_pred cCChhhhhhHHHHhccccCCchhhHHHHHCCCcHHHHHHhccCChHHHHHHHHHHHhhhccChHHHHHHhhhhhHHHHHH
Q 001385 379 SDNRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKL 458 (1088)
Q Consensus 379 s~N~~v~~~a~~~L~~L~~~~~~~~~l~~~~~~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd~~~~~v~~~g~lp~L~~ 458 (1088)
..|..-+++....|+|++-|+.+...+..+++++-.+..|...+...+..++..|.+++ .+.....-+.+++-+|....
T Consensus 28 tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC-~d~~n~~~I~ea~g~plii~ 106 (173)
T KOG4646|consen 28 TTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLC-LDKTNAKFIREALGLPLIIF 106 (173)
T ss_pred hccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhc-cChHHHHHHHHhcCCceEEe
Confidence 35667788888899999999999999999999999899999988888899999999999 45566777888999998888
Q ss_pred HhcCCChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhh
Q 001385 459 LCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLT 502 (1088)
Q Consensus 459 Ll~~~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll 502 (1088)
.+.+........|+.++-.+.++...-+..+.+..++.+..+..
T Consensus 107 ~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~ 150 (173)
T KOG4646|consen 107 VLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWR 150 (173)
T ss_pred ecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHH
Confidence 77777777767777778888888777666665655666655544
No 139
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=94.65 E-value=0.025 Score=45.87 Aligned_cols=55 Identities=33% Similarity=0.239 Sum_probs=45.3
Q ss_pred hhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcCCchhHHHHHHHHHHhh
Q 001385 465 PEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAIL 520 (1088)
Q Consensus 465 ~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l 520 (1088)
++++..|++++|+++.+.....+-. ...+++.|+.++.++++.|+..|+++|..|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~-~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPY-LPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHH-HHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHH-HHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4688899999999887776665543 557889999999999999999999999754
No 140
>PRK09687 putative lyase; Provisional
Probab=94.51 E-value=0.21 Score=55.54 Aligned_cols=28 Identities=29% Similarity=0.222 Sum_probs=16.5
Q ss_pred ccccceeeccCChhhhhhHHHHhccccC
Q 001385 370 VRQLISMISSDNRHVVEQACSALSSLAG 397 (1088)
Q Consensus 370 Lp~L~~L~Ls~N~~v~~~a~~~L~~L~~ 397 (1088)
++.+..|.-+.|+.++..++++|+.|..
T Consensus 56 ~~~l~~ll~~~d~~vR~~A~~aLg~lg~ 83 (280)
T PRK09687 56 FRLAIELCSSKNPIERDIGADILSQLGM 83 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence 3444555555666666666666666653
No 141
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=94.50 E-value=0.067 Score=40.07 Aligned_cols=38 Identities=26% Similarity=0.217 Sum_probs=34.1
Q ss_pred HHHHHhhhhhHHHHHHHhcCCChhHHHHHHHHHhhhhc
Q 001385 443 VAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAF 480 (1088)
Q Consensus 443 ~~~~v~~~g~lp~L~~Ll~~~~~~vq~~Al~algnla~ 480 (1088)
....+.+.|+++.|..|+.+.+..+++.|+++++|++.
T Consensus 4 ~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 4 QKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 45677899999999999999999999999999999863
No 142
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=94.41 E-value=0.022 Score=43.13 Aligned_cols=37 Identities=27% Similarity=0.341 Sum_probs=32.8
Q ss_pred cceeecccChhhhhHhhhcCCchhHHHHHHHHHHhhc
Q 001385 485 RRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILG 521 (1088)
Q Consensus 485 ~~~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~ 521 (1088)
.++.+++.|+++.|+.++.+.+++++++|+|++.+++
T Consensus 4 ~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 4 NKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 3445669999999999999999999999999999875
No 143
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=94.30 E-value=0.1 Score=58.95 Aligned_cols=160 Identities=21% Similarity=0.293 Sum_probs=117.8
Q ss_pred cccccceeeccCChh--hhhhHHHHhccccCCchhhHHHHHCCCcHHHHHHhcc-CChHHHHHHHHHHHhhhccChHHHH
Q 001385 369 AVRQLISMISSDNRH--VVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKS-FAPEEVKSVLQVVGQLAFASDTVAQ 445 (1088)
Q Consensus 369 ~Lp~L~~L~Ls~N~~--v~~~a~~~L~~L~~~~~~~~~l~~~~~~~~Ll~lL~~-~~~~~~~~~l~~L~~L~~~sd~~~~ 445 (1088)
.+..|..+..+.|-. |..++.+.|..+-. ..+.+++...| ...++.+-+. ..++.....+..|.++..+++...+
T Consensus 181 ~lD~Llrmf~aPn~et~vRve~~rlLEq~~~-aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet~~ 258 (832)
T KOG3678|consen 181 GLDLLLRMFQAPNLETSVRVEAARLLEQILV-AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEETCQ 258 (832)
T ss_pred hHHHHHHHHhCCchhHHHHHHHHHHHHHHHh-hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHHHH
Confidence 344555555555532 35566666655542 22335666665 3344444333 3456677789999999999999999
Q ss_pred HHhhhhhHHHHHHHhcCCChhHHHHHHHHHhhhhccc--cccceeecccChhhhhHhhhcCCchhHHHHHHHHHHhhcch
Q 001385 446 KMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCL--ENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGEN 523 (1088)
Q Consensus 446 ~v~~~g~lp~L~~Ll~~~~~~vq~~Al~algnla~~~--~~~~~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 523 (1088)
.+++.|.+.....-++..++.+-+.+..++||.+.+. +-+++++ +..+.++|.-+..+.++-.+-.||.+++.++.+
T Consensus 259 ~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmv-eKr~~EWLF~LA~skDel~R~~AClAV~vlat~ 337 (832)
T KOG3678|consen 259 RLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMV-EKRAAEWLFPLAFSKDELLRLHACLAVAVLATN 337 (832)
T ss_pred HHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHH-HhhhhhhhhhhhcchHHHHHHHHHHHHhhhhhh
Confidence 9999999999988888889999999999999998654 4445554 788889999999999988999999999999998
Q ss_pred HHHHHhhh
Q 001385 524 ESLRRAIR 531 (1088)
Q Consensus 524 ~~~r~~~~ 531 (1088)
.++.+..+
T Consensus 338 KE~E~~Vr 345 (832)
T KOG3678|consen 338 KEVEREVR 345 (832)
T ss_pred hhhhHHHh
Confidence 87766554
No 144
>PRK09687 putative lyase; Provisional
Probab=93.98 E-value=0.3 Score=54.28 Aligned_cols=135 Identities=19% Similarity=0.174 Sum_probs=89.1
Q ss_pred cccccceeeccCChhhhhhHHHHhccccCCchhhHHHHHCCCcHHHHHHhccCChHHHHHHHHHHHhhhccChHHHHHHh
Q 001385 369 AVRQLISMISSDNRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKML 448 (1088)
Q Consensus 369 ~Lp~L~~L~Ls~N~~v~~~a~~~L~~L~~~~~~~~~l~~~~~~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd~~~~~v~ 448 (1088)
.+..|..+.-..|..++..++++|+.+... .+...+..++.+.++.....+..+|+++......
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~~----------~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~------ 87 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLRGGQ----------DVFRLAIELCSSKNPIERDIGADILSQLGMAKRC------ 87 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhcCcc----------hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc------
Confidence 355666667788889999999999988732 2334455666777777778888888887632211
Q ss_pred hhhhHHHHHHH-hcCCChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcCCchhHHHHHHHHHHhhcchH
Q 001385 449 TKDVLKSLKLL-CAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGENE 524 (1088)
Q Consensus 449 ~~g~lp~L~~L-l~~~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 524 (1088)
...+++.|..+ +.+.++.|+..|..++|++....... ...+.+.+...+.+.+.+|+..+.++|..++...
T Consensus 88 ~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ 159 (280)
T PRK09687 88 QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITAFDKSTNVRFAVAFALSVINDEA 159 (280)
T ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHH
Confidence 12356777766 56778888888888888874322111 1234455556666677777777777777666544
No 145
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.97 E-value=0.0015 Score=67.46 Aligned_cols=84 Identities=14% Similarity=0.009 Sum_probs=33.8
Q ss_pred ccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCccccccCCCCCcEEEccCCCCCCCchhhcCCCCCcEE
Q 001385 146 GVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPVLEKLYLDNNKLSTLPPELGAMKNLKVL 225 (1088)
Q Consensus 146 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L 225 (1088)
..+...+.||++.|+ .-.+...|..++.|..|+++.|.+..+|..++++..++.+++.+|+++.+|.++..+++++++
T Consensus 39 ~~~kr~tvld~~s~r--~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNR--LVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKN 116 (326)
T ss_pred hccceeeeehhhhhH--HHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchh
Confidence 334444444444443 111122233333444444444444444444444444444444444444444444444444444
Q ss_pred EccCCc
Q 001385 226 IVDNNM 231 (1088)
Q Consensus 226 ~Ls~N~ 231 (1088)
++-.|.
T Consensus 117 e~k~~~ 122 (326)
T KOG0473|consen 117 EQKKTE 122 (326)
T ss_pred hhccCc
Confidence 443333
No 146
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.84 E-value=0.0016 Score=67.32 Aligned_cols=74 Identities=19% Similarity=0.149 Sum_probs=27.6
Q ss_pred CccEEEccCCCCCCccccccCCCCCcEEEccCCCCCCCchhhcCCCCCcEEEccCCcCcccchhccCCCCCCEE
Q 001385 175 TVTAVSLCGLGLSALPVDLTRLPVLEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVELRECVGLVEL 248 (1088)
Q Consensus 175 ~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L 248 (1088)
..+.||++.|++..+-..+..+..|..|+++.|.+..+|..+..+..+..+++..|..+..|.+++.++.++.+
T Consensus 43 r~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 43 RVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKN 116 (326)
T ss_pred eeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchh
Confidence 33333333333333333333333333333333333333333333333333333333333333333333333333
No 147
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.65 E-value=0.027 Score=36.29 Aligned_cols=19 Identities=21% Similarity=0.525 Sum_probs=10.1
Q ss_pred ccEEEccCCCCCCcccccc
Q 001385 176 VTAVSLCGLGLSALPVDLT 194 (1088)
Q Consensus 176 L~~L~Ls~n~l~~lp~~l~ 194 (1088)
|++|||++|+|+.+|..|+
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 4555555555555554443
No 148
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.27 E-value=0.038 Score=35.59 Aligned_cols=18 Identities=28% Similarity=0.457 Sum_probs=8.7
Q ss_pred CcEEEccCCcCcccchhc
Q 001385 222 LKVLIVDNNMLVCVPVEL 239 (1088)
Q Consensus 222 L~~L~Ls~N~l~~lp~~l 239 (1088)
|++|+|++|+|+.+|..|
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 444555555544444443
No 149
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=93.10 E-value=0.17 Score=61.43 Aligned_cols=159 Identities=17% Similarity=0.179 Sum_probs=119.9
Q ss_pred cceeeccCChhhhhhHHHHhccccCCchhh------HHHHHCCCcHHHHHHhccCChHHHHHHHHHHHhhhccChHHHHH
Q 001385 373 LISMISSDNRHVVEQACSALSSLAGDVSVA------MLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQK 446 (1088)
Q Consensus 373 L~~L~Ls~N~~v~~~a~~~L~~L~~~~~~~------~~l~~~~~~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd~~~~~ 446 (1088)
|..|-.+.|....+.+.-+|.|++...... ..+....+++.|+.+|..++..++..+..+|.||.. |.-.+.
T Consensus 524 l~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~--d~rnk~ 601 (717)
T KOG1048|consen 524 LLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSR--DIRNKE 601 (717)
T ss_pred HHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhcc--Cchhhh
Confidence 444556788888898899999998744333 233677889999999999999999999999999983 333455
Q ss_pred HhhhhhHHHHHHHhcCCCh------hHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcCC-chhHHHHHHHHHHh
Q 001385 447 MLTKDVLKSLKLLCAHKNP------EVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGP-EPRVNKAAARALAI 519 (1088)
Q Consensus 447 v~~~g~lp~L~~Ll~~~~~------~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~~-~~~v~~~a~~aL~~ 519 (1088)
++..++||.|++.+.+..+ ..-..++.++.|+...+-.-++-+.+.+..+-|+.|..+. .++..++|+..+.-
T Consensus 602 ligk~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~ 681 (717)
T KOG1048|consen 602 LIGKYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDV 681 (717)
T ss_pred hhhcchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHH
Confidence 6678999999999886544 3444566778898866666666666778888888877665 44788888888888
Q ss_pred hcchHHHHHhhhcC
Q 001385 520 LGENESLRRAIRGR 533 (1088)
Q Consensus 520 l~~~~~~r~~~~~~ 533 (1088)
+-...+++...+++
T Consensus 682 lW~y~eLh~~~kk~ 695 (717)
T KOG1048|consen 682 LWQYKELHFKLKKK 695 (717)
T ss_pred HHHHHHHhhhHhhh
Confidence 87777777766643
No 150
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=92.86 E-value=0.35 Score=39.06 Aligned_cols=53 Identities=25% Similarity=0.277 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhhhccChHHHHHHhhhhhHHHHHHHhcCCChhHHHHHHHHHhhh
Q 001385 425 EVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNL 478 (1088)
Q Consensus 425 ~~~~~l~~L~~L~~~sd~~~~~v~~~g~lp~L~~Ll~~~~~~vq~~Al~algnl 478 (1088)
+...++.+|++++.......+. +...++|.|..++.+.+..|+..|++++|+|
T Consensus 3 vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 3 VRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4566888999887665555544 6678999999999999999999999999985
No 151
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=92.31 E-value=0.0083 Score=67.32 Aligned_cols=269 Identities=14% Similarity=0.074 Sum_probs=143.2
Q ss_pred hhcCCCCCccEEEeeCCCC-CCCCcccc-ccCccccEEeCcCCCCCCCCc-cccccCCCCccEEEccCCC-CC--Ccccc
Q 001385 119 RVVKRREPLRAVVLTKGVG-SGHLSDGI-GVLTRLMRSDLSTSGPGNNMG-SGFCDHWKTVTAVSLCGLG-LS--ALPVD 192 (1088)
Q Consensus 119 ~~~~~l~~L~~L~Ls~n~i-~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~~-~~~~~~l~~L~~L~Ls~n~-l~--~lp~~ 192 (1088)
....++++++.|++.++.. ++..-..+ ..+++|+.|+|..|..++... ......+++|++|+++.+. |+ .+-.-
T Consensus 158 t~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~ 237 (483)
T KOG4341|consen 158 TFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQAL 237 (483)
T ss_pred HHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHH
Confidence 4556789999998888752 22111222 467899999999875333332 2244578999999999875 33 22223
Q ss_pred ccCCCCCcEEEccCCCCCCC---chhhcCCCCCcEEEccCCc-Ccc--cchhccCCCCCCEEEeccCCC-CCCc-cc-cc
Q 001385 193 LTRLPVLEKLYLDNNKLSTL---PPELGAMKNLKVLIVDNNM-LVC--VPVELRECVGLVELSLEHNRL-VRPL-LD-FR 263 (1088)
Q Consensus 193 l~~l~~L~~L~L~~N~l~~l---p~~l~~l~~L~~L~Ls~N~-l~~--lp~~l~~l~~L~~L~Ls~N~l-~~~~-~~-l~ 263 (1088)
..++..|+.+.+.++.=..+ -..-..+..+..+++.++. ++. +-..-..+..|+.|+.+++.. +..+ .. -.
T Consensus 238 ~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~ 317 (483)
T KOG4341|consen 238 QRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQ 317 (483)
T ss_pred hccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhc
Confidence 44566677777765422111 1111334445556655543 332 111224567788888776543 2222 12 34
Q ss_pred CCccccEEEecCCC-CC--CCcccc-CCCCCCeEEeeCCCCCCCccccchhhhhcCcCCccccccccchhhhHHhhhccc
Q 001385 264 AMAELKILRLFGNP-LE--FLPEIL-PLLKLRHLSLANIRIVADENLRSVNVQIEMENNSYFGASRHKLSAFFSLIFRFS 339 (1088)
Q Consensus 264 ~l~~L~~L~Ls~N~-l~--~l~~l~-~l~~L~~L~L~~N~l~~~~~l~~l~~~~~l~~l~~l~l~~n~l~~~~~~l~~l~ 339 (1088)
+..+|+.|-++.++ ++ .+..++ +++.|+.|++..........+..+ ..+++.++.+.+++..+..- ..+..+.
T Consensus 318 ~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sl--s~~C~~lr~lslshce~itD-~gi~~l~ 394 (483)
T KOG4341|consen 318 HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASL--SRNCPRLRVLSLSHCELITD-EGIRHLS 394 (483)
T ss_pred CCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhh--ccCCchhccCChhhhhhhhh-hhhhhhh
Confidence 56788888888775 33 222233 667888888877766554444432 34577777777775443211 1122222
Q ss_pred CCCCcchhHHHhhhhcCCCCcc---ccccccccccccceeeccCChhhhhhHHHHhc
Q 001385 340 SCHHPLLASALAKIMQDQENRV---VVGKDENAVRQLISMISSDNRHVVEQACSALS 393 (1088)
Q Consensus 340 ~l~~l~l~~~L~~i~~l~~N~l---~ip~~~~~Lp~L~~L~Ls~N~~v~~~a~~~L~ 393 (1088)
+...-. .-.+.+++.+... ..-..+...++|+.+++.+...+..+++..+.
T Consensus 395 ~~~c~~---~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~ 448 (483)
T KOG4341|consen 395 SSSCSL---EGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFA 448 (483)
T ss_pred hccccc---cccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHH
Confidence 111000 0000112222211 22223455667777777777777666665443
No 152
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=92.01 E-value=0.06 Score=64.81 Aligned_cols=108 Identities=19% Similarity=0.145 Sum_probs=45.5
Q ss_pred CccccEEeCcCCCCCCCC-ccccccCCCCccEEEccCC--CCCCc----cccccCCCCCcEEEccCCC-CCCCc-hhh-c
Q 001385 148 LTRLMRSDLSTSGPGNNM-GSGFCDHWKTVTAVSLCGL--GLSAL----PVDLTRLPVLEKLYLDNNK-LSTLP-PEL-G 217 (1088)
Q Consensus 148 l~~L~~L~Ls~N~l~~~~-~~~~~~~l~~L~~L~Ls~n--~l~~l----p~~l~~l~~L~~L~L~~N~-l~~lp-~~l-~ 217 (1088)
++.|+.|.+.++..+... .......+++|+.|+++++ .+... ......+.+|+.|+++++. ++..- ..+ .
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 455555555555311111 2223334555555555542 11111 1122234555555555555 33111 112 2
Q ss_pred CCCCCcEEEccCCc-Cc--ccchhccCCCCCCEEEeccCCC
Q 001385 218 AMKNLKVLIVDNNM-LV--CVPVELRECVGLVELSLEHNRL 255 (1088)
Q Consensus 218 ~l~~L~~L~Ls~N~-l~--~lp~~l~~l~~L~~L~Ls~N~l 255 (1088)
.+++|+.|.+.++. ++ .+-.....+++|++|+|+++..
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 24555555544444 33 2222334455555555555443
No 153
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.48 E-value=1.1 Score=51.35 Aligned_cols=136 Identities=20% Similarity=0.240 Sum_probs=104.0
Q ss_pred hhhhHHHHhccccCCchhhHHHHHCCCcHHHHHHhccCChHHHHHHHHHHHhhhccChHHHHHHhhhhhHHHHHHHhcCC
Q 001385 384 VVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHK 463 (1088)
Q Consensus 384 v~~~a~~~L~~L~~~~~~~~~l~~~~~~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd~~~~~v~~~g~lp~L~~Ll~~~ 463 (1088)
+..-++..|-|++.+.+.-.....-+++..|+..|...+-+...-....|..|....++ ..++.+.|++.+|.++....
T Consensus 279 LLrva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eN-K~~M~~~~iveKL~klfp~~ 357 (791)
T KOG1222|consen 279 LLRVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDEN-KIVMEQNGIVEKLLKLFPIQ 357 (791)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccc-hHHHHhccHHHHHHHhcCCC
Confidence 44556778889998877777788888889999998887766665556666666543333 34567789999999999999
Q ss_pred ChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcCCchhHHHHHHHHHHhhcch
Q 001385 464 NPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGEN 523 (1088)
Q Consensus 464 ~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 523 (1088)
.+.....+++.+.|+.|....|.++| +.|++|.+..++.+... ..-|...+..+..+
T Consensus 358 h~dL~~~tl~LlfNlSFD~glr~KMv-~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~d 414 (791)
T KOG1222|consen 358 HPDLRKATLMLLFNLSFDSGLRPKMV-NGGLLPHLASLLDSDTK--HGIALNMLYHLSCD 414 (791)
T ss_pred CHHHHHHHHHHhhhccccccccHHHh-hccchHHHHHHhCCccc--chhhhhhhhhhccC
Confidence 99999999999999999999999988 89999999998876543 23344444444433
No 154
>cd07202 cPLA2_Grp-IVC Group IVC cytoplasmic phospholipase A2; catalytic domain; Ca-independent. Group IVC cPLA2, a small 61 kDa protein, is a single domain alpha/beta hydrolase. It lacks a C2 domain; therefore, it has no Ca-dependence. Group IVC cPLA2 is also referred to as cPLA2-gamma. The cPLA2-gamma enzyme is predominantly found in cardiac and skeletal muscles, and to a lesser extent in the brain. Human cPLA2-gamma is approximately 30% identical to cPLA2-alpha. The catalytic domain of cytosolic phospholipase A2 (PLA2; EC 3.1.1.4) hydrolyzes the sn-2-acyl ester bond of phospholipids to release arachidonic acid. At the active site, cPLA2 contains a serine nucleophile through which the catalytic mechanism is initiated. The active site is partially covered by a solvent-accessible flexible lid. cPLA2 displays interfacial activation as it exists in both "closed lid" and "open lid" forms. Movement of the cPLA2 lid possibly exposes a greater hydrophobic surface and the active site. cPLA2 be
Probab=91.47 E-value=0.55 Score=53.94 Aligned_cols=62 Identities=18% Similarity=0.320 Sum_probs=49.6
Q ss_pred CCceEEEecCCCchHHH-HHHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhcCC-C--CHHHHHH
Q 001385 538 QGLRILSMDGGGMKGLA-TVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKL-M--TLDQCEE 602 (1088)
Q Consensus 538 ~~~riLsLdGGG~RG~~-~~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~~~-~--s~~e~~~ 602 (1088)
.+.-.++++|||.|.+. .+|+|+++.+. .+.+...+|+|.|-|+.+...|.... + +++++.+
T Consensus 38 ~P~i~ia~SGGG~RAm~~~~G~l~al~~~---GLl~~~tY~sglSGgsWl~~sLy~nn~w~t~v~~l~~ 103 (430)
T cd07202 38 APVIAVLGSGGGLRAMIACLGVLSELDKA---GLLDCVTYLAGVSGSTWCMSSLYTEPDWSTKLQTVED 103 (430)
T ss_pred CCeEEEEecCccHHHHHhccHHHHHhhhC---ChhhhhhhhccccchHHHHHHHHhcCCccccHHHHHH
Confidence 34678999999999776 99999999886 57888999999999998866665543 3 4666654
No 155
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=91.40 E-value=0.5 Score=56.26 Aligned_cols=151 Identities=18% Similarity=0.225 Sum_probs=114.9
Q ss_pred cceeeccCChhhhhhHHHHhccccCCchhh-HHHHHCCCcHHHHHHhccCChHHHHHHHHHHHhhhccChHHHHHHhhhh
Q 001385 373 LISMISSDNRHVVEQACSALSSLAGDVSVA-MLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKD 451 (1088)
Q Consensus 373 L~~L~Ls~N~~v~~~a~~~L~~L~~~~~~~-~~l~~~~~~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd~~~~~v~~~g 451 (1088)
+..+.......+...+|..+.++..-...+ .-+-..+++++++.++..+...+....+.++.|++..=..-....++.|
T Consensus 382 l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~n 461 (678)
T KOG1293|consen 382 LMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNN 461 (678)
T ss_pred HccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcC
Confidence 333344444556666676677766655555 3366778999999999776666677789999999853333456788999
Q ss_pred hHHHHHHHhcCCChhHHHHHHHHHhhhhccccccceeecccCh-hhhhHhhhcCCchhHHHHHHHHHHhhcch
Q 001385 452 VLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESL-RDLLMRLTVGPEPRVNKAAARALAILGEN 523 (1088)
Q Consensus 452 ~lp~L~~Ll~~~~~~vq~~Al~algnla~~~~~~~~~v~~~~~-~~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 523 (1088)
.+..|.+.+...+..++..++|++.++.|+.++..+....+.+ ...++.+...++..|++.+...+.++..+
T Consensus 462 gId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 462 GIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred cHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999988776554444 34456677889999999999888888766
No 156
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=91.34 E-value=0.23 Score=63.40 Aligned_cols=163 Identities=15% Similarity=0.108 Sum_probs=125.8
Q ss_pred ccccccccccccceeeccCCh-hhhhhHHHHhccccCCchhh--HHHHHCCCcHHHHHHhccCCh----HHHHH---HHH
Q 001385 362 VVGKDENAVRQLISMISSDNR-HVVEQACSALSSLAGDVSVA--MLLMKCDIMQPIIAVLKSFAP----EEVKS---VLQ 431 (1088)
Q Consensus 362 ~ip~~~~~Lp~L~~L~Ls~N~-~v~~~a~~~L~~L~~~~~~~--~~l~~~~~~~~Ll~lL~~~~~----~~~~~---~l~ 431 (1088)
.+..+.+....|....+..-. ......+.+|=||..|..+. ..+..-|++.-|+.+|....+ ..+.+ .|+
T Consensus 431 kvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILR 510 (2195)
T KOG2122|consen 431 KVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILR 510 (2195)
T ss_pred HHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHH
Confidence 555566777777766664433 34455667888899888877 445566888888888876544 33333 577
Q ss_pred HHHhhhccChHHHHHHhhhhhHHHHHHHhcCCChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcCCchhHHH
Q 001385 432 VVGQLAFASDTVAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNK 511 (1088)
Q Consensus 432 ~L~~L~~~sd~~~~~v~~~g~lp~L~~Ll~~~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~~~~~v~~ 511 (1088)
.+..++-.++.-.|.+.+..++..|..+|++..-.+..+||.++.||..-...-++++.+.++++.|..++.+++.-+..
T Consensus 511 NVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~ 590 (2195)
T KOG2122|consen 511 NVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAM 590 (2195)
T ss_pred HHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhh
Confidence 77777778888889999999999999999999999999999999999777777777788999999999999988887777
Q ss_pred HHHHHHHhhcchH
Q 001385 512 AAARALAILGENE 524 (1088)
Q Consensus 512 ~a~~aL~~l~~~~ 524 (1088)
-++.+|.++-...
T Consensus 591 GSaaALrNLln~R 603 (2195)
T KOG2122|consen 591 GSAAALRNLLNFR 603 (2195)
T ss_pred hHHHHHHHHhcCC
Confidence 7777777765443
No 157
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.15 E-value=0.14 Score=30.70 Aligned_cols=15 Identities=20% Similarity=0.359 Sum_probs=5.8
Q ss_pred CccEEEccCCCCCCc
Q 001385 175 TVTAVSLCGLGLSAL 189 (1088)
Q Consensus 175 ~L~~L~Ls~n~l~~l 189 (1088)
+|+.|+|++|+|+++
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 344555555544444
No 158
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=90.97 E-value=0.092 Score=63.19 Aligned_cols=204 Identities=23% Similarity=0.191 Sum_probs=112.0
Q ss_pred cCCCCCccEEEeeCCCCCCC--CccccccCccccEEeCcCCCCCCCC----ccccccCCCCccEEEccCCC-CCCcc-cc
Q 001385 121 VKRREPLRAVVLTKGVGSGH--LSDGIGVLTRLMRSDLSTSGPGNNM----GSGFCDHWKTVTAVSLCGLG-LSALP-VD 192 (1088)
Q Consensus 121 ~~~l~~L~~L~Ls~n~i~~~--~p~~l~~l~~L~~L~Ls~N~l~~~~----~~~~~~~l~~L~~L~Ls~n~-l~~lp-~~ 192 (1088)
...+++|+.|.+.++.-... +-.....+++|+.|+++++...... .......+++|+.|+|+++. ++..- ..
T Consensus 184 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~ 263 (482)
T KOG1947|consen 184 LSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA 263 (482)
T ss_pred HhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH
Confidence 44478888888887643222 2234567788899988873101111 12244456888888888887 55221 12
Q ss_pred cc-CCCCCcEEEccCCC-CC--CCchhhcCCCCCcEEEccCCcCc---ccchhccCCCCCCEEEeccCC----CCC----
Q 001385 193 LT-RLPVLEKLYLDNNK-LS--TLPPELGAMKNLKVLIVDNNMLV---CVPVELRECVGLVELSLEHNR----LVR---- 257 (1088)
Q Consensus 193 l~-~l~~L~~L~L~~N~-l~--~lp~~l~~l~~L~~L~Ls~N~l~---~lp~~l~~l~~L~~L~Ls~N~----l~~---- 257 (1088)
+. .+++|++|.+.++. ++ .+-.....+++|++|+|+++... .+.....++++|+.|.+.... ++.
T Consensus 264 l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~ 343 (482)
T KOG1947|consen 264 LASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLS 343 (482)
T ss_pred HHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHH
Confidence 22 37788888877776 55 33334466788999998877643 233333445555554433221 111
Q ss_pred --------Cc--ccccCCccccEEEecCCCCCCCc---cccCCCC--------------CCeEEeeCCCCCCCccccchh
Q 001385 258 --------PL--LDFRAMAELKILRLFGNPLEFLP---EILPLLK--------------LRHLSLANIRIVADENLRSVN 310 (1088)
Q Consensus 258 --------~~--~~l~~l~~L~~L~Ls~N~l~~l~---~l~~l~~--------------L~~L~L~~N~l~~~~~l~~l~ 310 (1088)
.. ..+..+++|+.+.+..+.+.... .+..+++ ++.|+++.........+....
T Consensus 344 ~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~ 423 (482)
T KOG1947|consen 344 GLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLA 423 (482)
T ss_pred HhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccchHHHHHhccCCccceEecccCccccccchHHHh
Confidence 11 12567778888877776643211 2233333 577777777665544443322
Q ss_pred hhhcCcCCcccccccc
Q 001385 311 VQIEMENNSYFGASRH 326 (1088)
Q Consensus 311 ~~~~l~~l~~l~l~~n 326 (1088)
.. ..++..+++.+.
T Consensus 424 ~~--~~~~~~l~~~~~ 437 (482)
T KOG1947|consen 424 DS--CSNLKDLDLSGC 437 (482)
T ss_pred hh--hhccccCCccCc
Confidence 11 334444544443
No 159
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.63 E-value=0.56 Score=57.21 Aligned_cols=148 Identities=15% Similarity=0.164 Sum_probs=109.1
Q ss_pred cccccee-eccCChhhhhhHHHHhccccCCchhh-HHHHHCCCcHHHHHHh-ccCChHHHHHHHHHHHhhhccChHHHHH
Q 001385 370 VRQLISM-ISSDNRHVVEQACSALSSLAGDVSVA-MLLMKCDIMQPIIAVL-KSFAPEEVKSVLQVVGQLAFASDTVAQK 446 (1088)
Q Consensus 370 Lp~L~~L-~Ls~N~~v~~~a~~~L~~L~~~~~~~-~~l~~~~~~~~Ll~lL-~~~~~~~~~~~l~~L~~L~~~sd~~~~~ 446 (1088)
.|.|..| ....|..+.-.||++|.+|+...+.- ..+++.++++.++.-| .-..-++.++++++|..+.-.. -..
T Consensus 213 vp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H---~~A 289 (1051)
T KOG0168|consen 213 VPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH---PKA 289 (1051)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc---cHH
Confidence 4555554 34567888899999999999744444 7888999998885543 2333455677888888775321 234
Q ss_pred HhhhhhHHHHHHHhcCCChhHHHHHHHHHhhhhc--cccccceeecccChhhhhHhhhcCCchhHHHHHHHHHHhhcch
Q 001385 447 MLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAF--CLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGEN 523 (1088)
Q Consensus 447 v~~~g~lp~L~~Ll~~~~~~vq~~Al~algnla~--~~~~~~~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 523 (1088)
++..|++-.....+.-....+|+.|+...+|.+. ..|+..-++ ..+|+|-.++...+....+.+|-|+..+.+.
T Consensus 290 iL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~---ealPlL~~lLs~~D~k~ies~~ic~~ri~d~ 365 (1051)
T KOG0168|consen 290 ILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVM---EALPLLTPLLSYQDKKPIESVCICLTRIADG 365 (1051)
T ss_pred HHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHH---HHHHHHHHHHhhccchhHHHHHHHHHHHHHh
Confidence 6778888888888887788899999999999863 334444444 6789999999999999999999999988755
No 160
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=90.28 E-value=0.31 Score=46.09 Aligned_cols=70 Identities=23% Similarity=0.293 Sum_probs=57.7
Q ss_pred hhHHHHHHHh-cCCChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcCCchhHHHHHHHHHHhh
Q 001385 451 DVLKSLKLLC-AHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAIL 520 (1088)
Q Consensus 451 g~lp~L~~Ll-~~~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l 520 (1088)
.++..|..++ .+.++.+..-|+.-+|.++....+.+.++...|+.+.++.++.+++++|+++|..|+..+
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKL 113 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 3577888888 445666666688889999999899999888899999999999999999999999998765
No 161
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=89.59 E-value=0.79 Score=40.80 Aligned_cols=61 Identities=33% Similarity=0.435 Sum_probs=50.9
Q ss_pred HHHHHHHh-cCCChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcCCchhHHHHHHHHHHhhcchH
Q 001385 453 LKSLKLLC-AHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGENE 524 (1088)
Q Consensus 453 lp~L~~Ll-~~~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 524 (1088)
+|.|.+.+ .+.++.++..|++++|.+ .+..+.+.|..++.++++.|+..|++++..++..+
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~-----------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~~~ 62 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGEL-----------GDPEAIPALIELLKDEDPMVRRAAARALGRIGDPE 62 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCC-----------THHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHHHH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHc-----------CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHH
Confidence 46777777 789999999999999943 13356799999999999999999999999998654
No 162
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=89.50 E-value=0.22 Score=29.84 Aligned_cols=12 Identities=50% Similarity=0.722 Sum_probs=3.6
Q ss_pred CcEEEccCCCCC
Q 001385 199 LEKLYLDNNKLS 210 (1088)
Q Consensus 199 L~~L~L~~N~l~ 210 (1088)
|++|+|++|+|+
T Consensus 3 L~~L~l~~n~L~ 14 (17)
T PF13504_consen 3 LRTLDLSNNRLT 14 (17)
T ss_dssp -SEEEETSS--S
T ss_pred cCEEECCCCCCC
Confidence 333444444333
No 163
>cd07201 cPLA2_Grp-IVB-IVD-IVE-IVF Group IVB, IVD, IVE, and IVF cytosolic phospholipase A2; catalytic domain; Ca-dependent. Group IVB, IVD, IVE, and IVF cPLA2 consists of two domains: the regulatory C2 domain and alpha/beta hydrolase PLA2 domain. Group IVB, IVD, IVE, and IVF cPLA2 are also referred to as cPLA2-beta, -delta, -epsilon, and -zeta respectively. cPLA2-beta is approximately 30% identical to cPLA2-alpha and it shows low enzymatic activity compared to cPLA2alpha. cPLA2-beta hydrolyzes palmitic acid from 1-[14C]palmitoyl-2-arachidonoyl-PC and arachidonic acid from 1-palmitoyl-2[14C]arachidonoyl-PC, but not from 1-O-alkyl-2[3H]arachidonoyl-PC. cPLA2-delta, -epsilon, and -zeta are approximately 45-50% identical to cPLA2-beta and 31-37% identical to cPLA2-alpha. It's possible that cPLA2-beta, -delta, -epsilon, and -zeta may have arisen by gene duplication from an ancestral gene. The catalytic domain of cytosolic phospholipase A2 (PLA2; EC 3.1.1.4) hydrolyzes the sn-2-acyl ester bon
Probab=87.85 E-value=0.83 Score=54.07 Aligned_cols=73 Identities=16% Similarity=0.134 Sum_probs=57.4
Q ss_pred CceEEEecCCCchHHH-HHHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhcC-CCCHHHHHHHHHHhhccccCC
Q 001385 539 GLRILSMDGGGMKGLA-TVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVK-LMTLDQCEEIYKNLGKLVFAE 614 (1088)
Q Consensus 539 ~~riLsLdGGG~RG~~-~~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~~-~~s~~e~~~~y~~~~~~iF~~ 614 (1088)
+.-.++++|||.|.+. .+|+|+++.+. .+.+...+++|.|-|+-....|... .++-+++.+...++.+.++..
T Consensus 53 P~Igia~SGGGyRAml~gaG~l~al~~~---GLLq~~tYlaGlSGg~Wl~gSLy~npn~ss~dl~~~iw~l~~~i~~~ 127 (541)
T cd07201 53 PVVAVMTTGGGTRALTSMYGSLLGLQKL---GLLDCVSYITGLSGSTWTMATLYEDPNWSQKDLEGPIEEARKHVTKS 127 (541)
T ss_pred CeEEEEecCccHHHHHhccHHHHhhhcC---CchhhhheecccCccHHHHHHHHcCCCCchhhHHHHHHHHHhhhccc
Confidence 4567999999999877 89999999774 5788899999999999997777665 677777766655555566643
No 164
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=87.01 E-value=3.4 Score=53.94 Aligned_cols=85 Identities=18% Similarity=0.177 Sum_probs=48.2
Q ss_pred ccceeeccCChhhhhhHHHHhccccCCchhhHHHHHCCCcHHHHHHhccCChHHHHHHHHHHHhhhccChHHHHHHhhhh
Q 001385 372 QLISMISSDNRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKD 451 (1088)
Q Consensus 372 ~L~~L~Ls~N~~v~~~a~~~L~~L~~~~~~~~~l~~~~~~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd~~~~~v~~~g 451 (1088)
.|..+.-..++.|+..++.+|+.+... +.++..+.+.++++...+...|..+... +..
T Consensus 718 ~l~~~L~D~d~~VR~~Av~aL~~~~~~-------------~~l~~~l~D~~~~VR~~aa~aL~~~~~~---------~~~ 775 (897)
T PRK13800 718 LFAAALGDPDHRVRIEAVRALVSVDDV-------------ESVAGAATDENREVRIAVAKGLATLGAG---------GAP 775 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhcccCc-------------HHHHHHhcCCCHHHHHHHHHHHHHhccc---------cch
Confidence 344444567788999999999987421 2344555666666666566555554311 111
Q ss_pred hHHHHHHHhcCCChhHHHHHHHHHhhh
Q 001385 452 VLKSLKLLCAHKNPEVQRFALLAVGNL 478 (1088)
Q Consensus 452 ~lp~L~~Ll~~~~~~vq~~Al~algnl 478 (1088)
+++.|..++.+.++.|+..|+.+++++
T Consensus 776 ~~~~L~~ll~D~d~~VR~aA~~aLg~~ 802 (897)
T PRK13800 776 AGDAVRALTGDPDPLVRAAALAALAEL 802 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 244555555555555555555555543
No 165
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=86.83 E-value=0.5 Score=35.19 Aligned_cols=36 Identities=28% Similarity=0.202 Sum_probs=31.3
Q ss_pred ceeecccChhhhhHhhhcCCchhHHHHHHHHHHhhc
Q 001385 486 RILVTSESLRDLLMRLTVGPEPRVNKAAARALAILG 521 (1088)
Q Consensus 486 ~~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~ 521 (1088)
++.+.+.|.++.|+.++.+.+.++++.++|++.++.
T Consensus 5 ~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 5 KQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 334558899999999999999999999999999875
No 166
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=86.42 E-value=2.6 Score=50.43 Aligned_cols=116 Identities=14% Similarity=0.130 Sum_probs=93.2
Q ss_pred cccccceeeccCChhhhhhHHHHhccccCCchhh-HHHHHCCCcHHHHHHhccCChHHHHHHHHHHHhhhccChHHHHHH
Q 001385 369 AVRQLISMISSDNRHVVEQACSALSSLAGDVSVA-MLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKM 447 (1088)
Q Consensus 369 ~Lp~L~~L~Ls~N~~v~~~a~~~L~~L~~~~~~~-~~l~~~~~~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd~~~~~v 447 (1088)
....|..|..-....+...+..++.|+--+-+.. ...+..|+++.++..+...+.......+.+|.++.|.++......
T Consensus 420 v~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~ 499 (678)
T KOG1293|consen 420 VAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQ 499 (678)
T ss_pred hHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHH
Confidence 3444555555555667778888888988877777 889999999999999999999888999999999999998876654
Q ss_pred hhhhh-HHHHHHHhcCCChhHHHHHHHHHhhhhccccc
Q 001385 448 LTKDV-LKSLKLLCAHKNPEVQRFALLAVGNLAFCLEN 484 (1088)
Q Consensus 448 ~~~g~-lp~L~~Ll~~~~~~vq~~Al~algnla~~~~~ 484 (1088)
+...+ +..+..+.-++++.||..++..+.|++++...
T Consensus 500 ~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~ 537 (678)
T KOG1293|consen 500 LLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRK 537 (678)
T ss_pred HHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHH
Confidence 44333 56677788899999999999999999776544
No 167
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=86.32 E-value=1.9 Score=56.25 Aligned_cols=131 Identities=18% Similarity=0.186 Sum_probs=78.8
Q ss_pred ccccceeeccCChhhhhhHHHHhccccCCchhhHHHHHCCCcHHHHHHhccCChHHHHHHHHHHHhhhccC---------
Q 001385 370 VRQLISMISSDNRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFAS--------- 440 (1088)
Q Consensus 370 Lp~L~~L~Ls~N~~v~~~a~~~L~~L~~~~~~~~~l~~~~~~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~s--------- 440 (1088)
.+.|..+.-..++.|+..++.+|+.+..... ..++.|..++++.++.+...++.+|.++....
T Consensus 744 ~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~--------~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~a 815 (897)
T PRK13800 744 VESVAGAATDENREVRIAVAKGLATLGAGGA--------PAGDAVRALTGDPDPLVRAAALAALAELGCPPDDVAAATAA 815 (897)
T ss_pred cHHHHHHhcCCCHHHHHHHHHHHHHhccccc--------hhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHHHHH
Confidence 4456666677888999999999998875322 11345666667777766666776666554211
Q ss_pred ----hHHH-----H---HHhhhhhHHHHHHHhcCCChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcCCchh
Q 001385 441 ----DTVA-----Q---KMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPR 508 (1088)
Q Consensus 441 ----d~~~-----~---~v~~~g~lp~L~~Ll~~~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~~~~~ 508 (1088)
+... + .+-...+++.|..++.+.+..|+..|.++|+.+. .+....+.|...+...+..
T Consensus 816 L~d~d~~VR~~Aa~aL~~l~~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~----------~~~~a~~~L~~al~D~d~~ 885 (897)
T PRK13800 816 LRASAWQVRQGAARALAGAAADVAVPALVEALTDPHLDVRKAAVLALTRWP----------GDPAARDALTTALTDSDAD 885 (897)
T ss_pred hcCCChHHHHHHHHHHHhccccchHHHHHHHhcCCCHHHHHHHHHHHhccC----------CCHHHHHHHHHHHhCCCHH
Confidence 1100 0 1112235566666777777777777777776540 1223445666666677777
Q ss_pred HHHHHHHHHH
Q 001385 509 VNKAAARALA 518 (1088)
Q Consensus 509 v~~~a~~aL~ 518 (1088)
|+++|..+|.
T Consensus 886 Vr~~A~~aL~ 895 (897)
T PRK13800 886 VRAYARRALA 895 (897)
T ss_pred HHHHHHHHHh
Confidence 7777777664
No 168
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=85.60 E-value=0.63 Score=31.18 Aligned_cols=18 Identities=28% Similarity=0.397 Sum_probs=8.8
Q ss_pred CCccEEEccCCCCCCccc
Q 001385 174 KTVTAVSLCGLGLSALPV 191 (1088)
Q Consensus 174 ~~L~~L~Ls~n~l~~lp~ 191 (1088)
++|++|+|++|+|+.+|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 344555555555554444
No 169
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=85.60 E-value=0.63 Score=31.18 Aligned_cols=18 Identities=28% Similarity=0.397 Sum_probs=8.8
Q ss_pred CCccEEEccCCCCCCccc
Q 001385 174 KTVTAVSLCGLGLSALPV 191 (1088)
Q Consensus 174 ~~L~~L~Ls~n~l~~lp~ 191 (1088)
++|++|+|++|+|+.+|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 344555555555554444
No 170
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=84.81 E-value=0.87 Score=58.54 Aligned_cols=125 Identities=18% Similarity=0.200 Sum_probs=92.5
Q ss_pred CCccccccccccccccceeeccCCh----hhhhhHHHHhccccCCchhh----HHHHHCCCcHHHHHHhccCChHHHHHH
Q 001385 358 ENRVVVGKDENAVRQLISMISSDNR----HVVEQACSALSSLAGDVSVA----MLLMKCDIMQPIIAVLKSFAPEEVKSV 429 (1088)
Q Consensus 358 ~N~l~ip~~~~~Lp~L~~L~Ls~N~----~v~~~a~~~L~~L~~~~~~~----~~l~~~~~~~~Ll~lL~~~~~~~~~~~ 429 (1088)
.|.-.|...-+.|.-|+.+.-...+ .+.+.+--.|.|...+...+ +.+.+.+++..|++.|++..--.+.++
T Consensus 471 eNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNa 550 (2195)
T KOG2122|consen 471 ENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNA 550 (2195)
T ss_pred ccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecc
Confidence 3443444444555555555443322 23444444566666555444 567889999999999999888888999
Q ss_pred HHHHHhhhccChHHHHHHhhhhhHHHHHHHhcCCChhHHHHHHHHHhhhhccc
Q 001385 430 LQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCL 482 (1088)
Q Consensus 430 l~~L~~L~~~sd~~~~~v~~~g~lp~L~~Ll~~~~~~vq~~Al~algnla~~~ 482 (1088)
+.+|.||.-.+..+.+.+++.|+++.|..|+.+++.-+-..+..++.|+....
T Consensus 551 CGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 551 CGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred hhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 99999999888888999999999999999999988878777888888886544
No 171
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=83.60 E-value=3.7 Score=46.56 Aligned_cols=150 Identities=17% Similarity=0.119 Sum_probs=103.5
Q ss_pred ccceeeccCChhhhhhHHHHhccccCCchhhHHHHHCCCcHHHHHHhccC----ChHHHHHHHHHHHhhhccChHHHHHH
Q 001385 372 QLISMISSDNRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSF----APEEVKSVLQVVGQLAFASDTVAQKM 447 (1088)
Q Consensus 372 ~L~~L~Ls~N~~v~~~a~~~L~~L~~~~~~~~~l~~~~~~~~Ll~lL~~~----~~~~~~~~l~~L~~L~~~sd~~~~~v 447 (1088)
.+..+.-+.+..+...++..|+.+.........-...+.++.++..+++. +.+.+..++++|.++. ..+......
T Consensus 109 ~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL-~~~~~R~~f 187 (312)
T PF03224_consen 109 PFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLL-RSKEYRQVF 187 (312)
T ss_dssp HHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHH-TSHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHh-CcchhHHHH
Confidence 34444456688899999999999987666553322244556666666542 2344467899999998 677778888
Q ss_pred hhhhhHHHHHHHh-----c--CCChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhc-CCchhHHHHHHHHHHh
Q 001385 448 LTKDVLKSLKLLC-----A--HKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTV-GPEPRVNKAAARALAI 519 (1088)
Q Consensus 448 ~~~g~lp~L~~Ll-----~--~~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~-~~~~~v~~~a~~aL~~ 519 (1088)
++.+.++.|..++ . ..+..+|=.++.++.-+.|..+....+. ..++++.|+.++. +..++|.+-+..++.+
T Consensus 188 ~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~-~~~~i~~L~~i~~~~~KEKvvRv~la~l~N 266 (312)
T PF03224_consen 188 WKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELN-KKYLIPLLADILKDSIKEKVVRVSLAILRN 266 (312)
T ss_dssp HTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHH-TTSHHHHHHHHHHH--SHHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHh-ccchHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 8999999999998 2 2344566678888999999988877766 6668899888764 5567788888888887
Q ss_pred hcch
Q 001385 520 LGEN 523 (1088)
Q Consensus 520 l~~~ 523 (1088)
+...
T Consensus 267 l~~~ 270 (312)
T PF03224_consen 267 LLSK 270 (312)
T ss_dssp TTSS
T ss_pred HHhc
Confidence 7654
No 172
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=83.38 E-value=1 Score=30.17 Aligned_cols=18 Identities=61% Similarity=0.975 Sum_probs=9.8
Q ss_pred CCCcEEEccCCCCCCCch
Q 001385 197 PVLEKLYLDNNKLSTLPP 214 (1088)
Q Consensus 197 ~~L~~L~L~~N~l~~lp~ 214 (1088)
++|++|+|++|+|+.+|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 445555555555555554
No 173
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=83.38 E-value=1 Score=30.17 Aligned_cols=18 Identities=61% Similarity=0.975 Sum_probs=9.8
Q ss_pred CCCcEEEccCCCCCCCch
Q 001385 197 PVLEKLYLDNNKLSTLPP 214 (1088)
Q Consensus 197 ~~L~~L~L~~N~l~~lp~ 214 (1088)
++|++|+|++|+|+.+|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 445555555555555554
No 174
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=82.82 E-value=2.9 Score=40.13 Aligned_cols=82 Identities=23% Similarity=0.225 Sum_probs=70.1
Q ss_pred cCChhhhhhHHHHhccccCCchhhHHHHHCCCcHHHHHHhccCChHHHHHHHHHHHhhhccChHHHHHHhhhhhHHHHHH
Q 001385 379 SDNRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKL 458 (1088)
Q Consensus 379 s~N~~v~~~a~~~L~~L~~~~~~~~~l~~~~~~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd~~~~~v~~~g~lp~L~~ 458 (1088)
..|..+.+-++-+|.|+|.+..+...+.+.+.++-++.+++++....+..++-.+..|.+..-....++....++...++
T Consensus 69 e~ne~LvefgIgglCNlC~d~~n~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r 148 (173)
T KOG4646|consen 69 EQNELLVEFGIGGLCNLCLDKTNAKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQR 148 (173)
T ss_pred cccHHHHHHhHHHHHhhccChHHHHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHH
Confidence 36777888899999999999999999999999999999999988888899999999999888888888877777766665
Q ss_pred Hh
Q 001385 459 LC 460 (1088)
Q Consensus 459 Ll 460 (1088)
.-
T Consensus 149 ~~ 150 (173)
T KOG4646|consen 149 WR 150 (173)
T ss_pred HH
Confidence 43
No 175
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=82.53 E-value=5.5 Score=46.13 Aligned_cols=157 Identities=20% Similarity=0.243 Sum_probs=121.1
Q ss_pred ccccceeeccCChhhhhhHHHHhccccCCchhhHHHHHCCCcHHHHHHhccCC--hHHHHHHHHHHHhhhccChHHHHHH
Q 001385 370 VRQLISMISSDNRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFA--PEEVKSVLQVVGQLAFASDTVAQKM 447 (1088)
Q Consensus 370 Lp~L~~L~Ls~N~~v~~~a~~~L~~L~~~~~~~~~l~~~~~~~~Ll~lL~~~~--~~~~~~~l~~L~~L~~~sd~~~~~v 447 (1088)
+..+..+.++++..|+..+.+.+.++..+......+.+.++-.-++..|.... ..+.++++..+..+....+ ...-
T Consensus 27 ~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~--~~~~ 104 (371)
T PF14664_consen 27 GERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKK--GPKE 104 (371)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcC--Cccc
Confidence 34455577888899999999999999999988888888887666666676543 3445678888877764321 1223
Q ss_pred hhhhhHHHHHHHhcCCChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcCCchhHHHHHHHHHHhhcchHHHH
Q 001385 448 LTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGENESLR 527 (1088)
Q Consensus 448 ~~~g~lp~L~~Ll~~~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~r 527 (1088)
+..|++..++.+..+.+.+.+..++.++..++..+.. ++..+|.+..|+..+.....++.+..+.++-++-+++..|
T Consensus 105 ~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR 181 (371)
T PF14664_consen 105 IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTR 181 (371)
T ss_pred CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchh
Confidence 6789999999999999999999899999988877765 6667888899888877665568888888888888888777
Q ss_pred Hhhh
Q 001385 528 RAIR 531 (1088)
Q Consensus 528 ~~~~ 531 (1088)
+-++
T Consensus 182 ~yl~ 185 (371)
T PF14664_consen 182 KYLR 185 (371)
T ss_pred hhhc
Confidence 6544
No 176
>cd07200 cPLA2_Grp-IVA Group IVA cytosolic phospholipase A2; catalytic domain; Ca-dependent. Group IVA cPLA2, an 85 kDa protein, consists of two domains: the regulatory C2 domain and the alpha/beta hydrolase PLA2 domain. Group IVA cPLA2 is also referred to as cPLA2-alpha. The catalytic domain of cytosolic phospholipase A2 (cPLA2; EC 3.1.1.4) hydrolyzes the sn-2-acyl ester bond of phospholipids to release arachidonic acid. At the active site, cPLA2 contains a serine nucleophile through which the catalytic mechanism is initiated. The active site is partially covered by a solvent-accessible flexible lid. cPLA2 displays interfacial activation as it exists in both "closed lid" and "open lid" forms. Movement of the cPLA2 lid possibly exposes a greater hydrophobic surface and the active site. cPLA2 belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile
Probab=82.50 E-value=1.1 Score=53.12 Aligned_cols=61 Identities=15% Similarity=0.176 Sum_probs=48.6
Q ss_pred CceEEEecCCCchHHH-HHHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhcC-CCCH---HHHHH
Q 001385 539 GLRILSMDGGGMKGLA-TVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVK-LMTL---DQCEE 602 (1088)
Q Consensus 539 ~~riLsLdGGG~RG~~-~~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~~-~~s~---~e~~~ 602 (1088)
+.-.++++|||.|.+. -+|+|+++.+. .+.+...+++|-|-|+..-..++.. .++- +++.+
T Consensus 44 P~Iaia~SGGGyRAMl~gaG~l~Ald~g---GLLq~aTYlaGLSGgsWlvgsl~~n~nf~sv~~~~l~~ 109 (505)
T cd07200 44 PVIALLGSGGGFRAMVGMSGAMKALYDS---GVLDCATYVAGLSGSTWYMSTLYSHPDFPEKGPGEINK 109 (505)
T ss_pred CeEEEEecCccHHHHhhccHHHHhhhcC---ChhhhhhhhhcCCccHHHHHHHHhCCCCCccCHHHHHH
Confidence 4568999999999887 89999999884 5788899999999999876666654 4554 55543
No 177
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=82.40 E-value=7.4 Score=45.66 Aligned_cols=122 Identities=20% Similarity=0.211 Sum_probs=81.8
Q ss_pred ccccceeeccCChhhhhhHHHHhccccCCchhhHHHHHCCCcHHHHHHhccCChHHHHHHHHHHHhhhccChHHHHHHhh
Q 001385 370 VRQLISMISSDNRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLT 449 (1088)
Q Consensus 370 Lp~L~~L~Ls~N~~v~~~a~~~L~~L~~~~~~~~~l~~~~~~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd~~~~~v~~ 449 (1088)
+..|....-..++.+...+..+|+.+... .....|+..+++.++.....++.++.. ..
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~~~----------~a~~~L~~~L~~~~p~vR~aal~al~~------------r~ 145 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLGGR----------QAEPWLEPLLAASEPPGRAIGLAALGA------------HR 145 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCCch----------HHHHHHHHHhcCCChHHHHHHHHHHHh------------hc
Confidence 34444444455555777777777766632 223455666666666655555554443 12
Q ss_pred hhhHHHHHHHhcCCChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcCCchhHHHHHHHHHHhhcchH
Q 001385 450 KDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGENE 524 (1088)
Q Consensus 450 ~g~lp~L~~Ll~~~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 524 (1088)
....+.|..++.+.++.|+..|++++|.+- .....+.|...+.+.++.|+..|.+++..++..+
T Consensus 146 ~~~~~~L~~~L~d~d~~Vra~A~raLG~l~-----------~~~a~~~L~~al~d~~~~VR~aA~~al~~lG~~~ 209 (410)
T TIGR02270 146 HDPGPALEAALTHEDALVRAAALRALGELP-----------RRLSESTLRLYLRDSDPEVRFAALEAGLLAGSRL 209 (410)
T ss_pred cChHHHHHHHhcCCCHHHHHHHHHHHHhhc-----------cccchHHHHHHHcCCCHHHHHHHHHHHHHcCCHh
Confidence 234578888888999999999999988642 3345566778888899999999999998888754
No 178
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=81.65 E-value=0.73 Score=52.33 Aligned_cols=174 Identities=17% Similarity=0.078 Sum_probs=107.8
Q ss_pred CCCCCccEEEeeCCCC-CCC-CccccccCccccEEeCcCCCCCCCC-ccccccCCCCccEEEccCCC-CCCcc-ccc-cC
Q 001385 122 KRREPLRAVVLTKGVG-SGH-LSDGIGVLTRLMRSDLSTSGPGNNM-GSGFCDHWKTVTAVSLCGLG-LSALP-VDL-TR 195 (1088)
Q Consensus 122 ~~l~~L~~L~Ls~n~i-~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~-~~~~~~~l~~L~~L~Ls~n~-l~~lp-~~l-~~ 195 (1088)
..+..+..+++.++.. ++. +-..-..+..|++|+.+++...... +-....+..+|+.|-|+.++ ++..- ..+ .+
T Consensus 265 ~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn 344 (483)
T KOG4341|consen 265 AYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRN 344 (483)
T ss_pred ccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcC
Confidence 3445566777666642 221 1112245788999999988632222 22234567899999998887 33111 112 36
Q ss_pred CCCCcEEEccCCCCC---CCchhhcCCCCCcEEEccCCcCc------ccchhccCCCCCCEEEeccCCCCCCc--ccccC
Q 001385 196 LPVLEKLYLDNNKLS---TLPPELGAMKNLKVLIVDNNMLV------CVPVELRECVGLVELSLEHNRLVRPL--LDFRA 264 (1088)
Q Consensus 196 l~~L~~L~L~~N~l~---~lp~~l~~l~~L~~L~Ls~N~l~------~lp~~l~~l~~L~~L~Ls~N~l~~~~--~~l~~ 264 (1088)
++.|+.|++..+... .+-.--.+++.|++|.|+++.+. .+...-..+..|+.|-|+++...... +.+..
T Consensus 345 ~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~ 424 (483)
T KOG4341|consen 345 CPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSI 424 (483)
T ss_pred ChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhh
Confidence 778999999887665 23322357889999999987643 22333456778899999988765322 45788
Q ss_pred CccccEEEecCCCCC---CCc-cccCCCCCCeEEe
Q 001385 265 MAELKILRLFGNPLE---FLP-EILPLLKLRHLSL 295 (1088)
Q Consensus 265 l~~L~~L~Ls~N~l~---~l~-~l~~l~~L~~L~L 295 (1088)
+++|+.++|..++-- .+. .-.+++++++..+
T Consensus 425 c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 425 CRNLERIELIDCQDVTKEAISRFATHLPNIKVHAY 459 (483)
T ss_pred CcccceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence 889999998877532 111 2335666655443
No 179
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.63 E-value=2.8 Score=50.15 Aligned_cols=113 Identities=18% Similarity=0.292 Sum_probs=76.6
Q ss_pred CcHHHHHHhccCChHHHHHHHHHHHhhhccChHHHHH-Hhh---hhhHHHHHHHhcCCChhHHHHHHHHHhhhhcccccc
Q 001385 410 IMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQK-MLT---KDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENR 485 (1088)
Q Consensus 410 ~~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd~~~~~-v~~---~g~lp~L~~Ll~~~~~~vq~~Al~algnla~~~~~~ 485 (1088)
.++.|.++|.+++-...+.++.+|..++-.+-...+. +.+ .-.+|++.++.+|..+.++..|+.++-.+..-. ++
T Consensus 129 lLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~-~q 207 (885)
T KOG2023|consen 129 LLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQ-TQ 207 (885)
T ss_pred HHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecC-cH
Confidence 4566777887777667777899998888543332211 011 135899999999999999988877765442221 11
Q ss_pred ceeecccChhhhhHhhhcCCchhHHHHHHHHHHhhcch
Q 001385 486 RILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGEN 523 (1088)
Q Consensus 486 ~~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 523 (1088)
.-.+.-..++..+..+....+++|+|..|.++.++-+-
T Consensus 208 al~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llev 245 (885)
T KOG2023|consen 208 ALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEV 245 (885)
T ss_pred HHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHh
Confidence 11221224566677788899999999999999988654
No 180
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.21 E-value=4.5 Score=51.63 Aligned_cols=153 Identities=23% Similarity=0.204 Sum_probs=108.0
Q ss_pred ccccceeeccCChhhhhhHHHHhccccCCchhhHHHHHCCCcHHHHHHhccCChHHHHHHHHHHHhhhccChHHHHHHhh
Q 001385 370 VRQLISMISSDNRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLT 449 (1088)
Q Consensus 370 Lp~L~~L~Ls~N~~v~~~a~~~L~~L~~~~~~~~~l~~~~~~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd~~~~~v~~ 449 (1088)
++.+..+.-|.+...+..++.+|+.+..+.+....-.--.+++..+..|.++.+.++-.++.+++++...=-...++-..
T Consensus 350 ~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~ 429 (1075)
T KOG2171|consen 350 FEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHH 429 (1075)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHH
Confidence 45566667778888888899999999877666533333345556677778888888888999999998655556677677
Q ss_pred hhhHHHHHHHhcC-CChhHHHHHHHHHhhhh-ccccccceeecccChhh-hhHhhhcCCchhHHHHHHHHHHhhcch
Q 001385 450 KDVLKSLKLLCAH-KNPEVQRFALLAVGNLA-FCLENRRILVTSESLRD-LLMRLTVGPEPRVNKAAARALAILGEN 523 (1088)
Q Consensus 450 ~g~lp~L~~Ll~~-~~~~vq~~Al~algnla-~~~~~~~~~v~~~~~~~-~L~~ll~~~~~~v~~~a~~aL~~l~~~ 523 (1088)
.-+.|.|...+.+ .+++||..|..++-|+. .|......=. -.+++. .|..+..+..+.+++.+..+++-.++.
T Consensus 430 e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pY-Ld~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~A 505 (1075)
T KOG2171|consen 430 ERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPY-LDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADA 505 (1075)
T ss_pred HhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHH-HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Confidence 7777788888776 67799999999987774 3433322211 112333 445566788888999999999888755
No 181
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=80.04 E-value=2.7 Score=29.46 Aligned_cols=29 Identities=31% Similarity=0.348 Sum_probs=25.4
Q ss_pred hHHHHHHHhcCCChhHHHHHHHHHhhhhc
Q 001385 452 VLKSLKLLCAHKNPEVQRFALLAVGNLAF 480 (1088)
Q Consensus 452 ~lp~L~~Ll~~~~~~vq~~Al~algnla~ 480 (1088)
++|.+.+++.+++++|+..|..+++.++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 47999999999999999999999998864
No 182
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=78.32 E-value=4.1 Score=38.66 Aligned_cols=70 Identities=24% Similarity=0.286 Sum_probs=52.1
Q ss_pred cHHHHHHh-ccCChHHHHHHHHHHHhhhccChHHHHHHhhhhhHHHHHHHhcCCChhHHHHHHHHHhhhhc
Q 001385 411 MQPIIAVL-KSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAF 480 (1088)
Q Consensus 411 ~~~Ll~lL-~~~~~~~~~~~l~~L~~L~~~sd~~~~~v~~~g~lp~L~~Ll~~~~~~vq~~Al~algnla~ 480 (1088)
+..|+.+| .+.++..+..++.=|++++..-+.....+-+.|+-.++.+|+.+.+++|+..||.++.-+..
T Consensus 45 lk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 45 LKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 34556666 34455556667777888887666667777788999999999999999999999999876643
No 183
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=76.26 E-value=2.9 Score=29.36 Aligned_cols=29 Identities=38% Similarity=0.604 Sum_probs=24.8
Q ss_pred hhhhhHhhhcCCchhHHHHHHHHHHhhcc
Q 001385 494 LRDLLMRLTVGPEPRVNKAAARALAILGE 522 (1088)
Q Consensus 494 ~~~~L~~ll~~~~~~v~~~a~~aL~~l~~ 522 (1088)
++|.+++++.+++++|+..|+.++..+.+
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 46889999999999999999999988764
No 184
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=75.52 E-value=14 Score=45.81 Aligned_cols=103 Identities=17% Similarity=0.174 Sum_probs=71.9
Q ss_pred ChHHHHHHHHHHHhh-hccChHHHHHHhhhhhHHHHHHHhcC-CChhHHHHHHHHHhhhhccccccceeecccChhhhhH
Q 001385 422 APEEVKSVLQVVGQL-AFASDTVAQKMLTKDVLKSLKLLCAH-KNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLM 499 (1088)
Q Consensus 422 ~~~~~~~~l~~L~~L-~~~sd~~~~~v~~~g~lp~L~~Ll~~-~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~ 499 (1088)
++..+..++--|.++ .+.++....-+--.-++|.|+.|+.+ .+..++..|++|+.++.-.-..-..+|++++++|+|+
T Consensus 181 Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~ 260 (1051)
T KOG0168|consen 181 DESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLL 260 (1051)
T ss_pred ChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHH
Confidence 444444444444333 34454443333334579999999997 4679999999999999766666666777999999987
Q ss_pred h-hhcCCchhHHHHHHHHHHhhcchH
Q 001385 500 R-LTVGPEPRVNKAAARALAILGENE 524 (1088)
Q Consensus 500 ~-ll~~~~~~v~~~a~~aL~~l~~~~ 524 (1088)
. |+...-.++-+.+..||.+|...+
T Consensus 261 ~kL~~IeyiDvAEQ~LqALE~iSR~H 286 (1051)
T KOG0168|consen 261 EKLLTIEYIDVAEQSLQALEKISRRH 286 (1051)
T ss_pred HhhhhhhhhHHHHHHHHHHHHHHhhc
Confidence 6 555666678888888888887554
No 185
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=75.34 E-value=12 Score=45.75 Aligned_cols=136 Identities=22% Similarity=0.222 Sum_probs=99.0
Q ss_pred ccccceeeccCChhhhhhHHHHhccccCCchhhHHHHHCCCcHHHHHHhccCChHHHHHHHHHHHhhhccChHHHHHHhh
Q 001385 370 VRQLISMISSDNRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLT 449 (1088)
Q Consensus 370 Lp~L~~L~Ls~N~~v~~~a~~~L~~L~~~~~~~~~l~~~~~~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd~~~~~v~~ 449 (1088)
++....+.-+.+..++.-+.-++..+....++...+ ++..+..-+.++++..+..+++++.++. +....
T Consensus 44 ~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l----~~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~----- 112 (526)
T PF01602_consen 44 FMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLIL----IINSLQKDLNSPNPYIRGLALRTLSNIR--TPEMA----- 112 (526)
T ss_dssp HHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHH----HHHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHH-----
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHH----HHHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchh-----
Confidence 455555555788777777777777777665553222 3445556677888888888999999987 22222
Q ss_pred hhhHHHHHHHhcCCChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcCCchhHHHHHHHHHHhh
Q 001385 450 KDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAIL 520 (1088)
Q Consensus 450 ~g~lp~L~~Ll~~~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l 520 (1088)
.-+++.+.+++.+.++.|++.|+.++..+.....+ .+... +.+.+..++..+++.|...|+.++..+
T Consensus 113 ~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~---~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 113 EPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPD---LVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC---CHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHH---HHHHH-HHHHHhhhccCCcchhHHHHHHHHHHH
Confidence 23578899999999999999999999988655443 22233 678899999999999999999999888
No 186
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=75.28 E-value=12 Score=45.16 Aligned_cols=157 Identities=16% Similarity=0.161 Sum_probs=106.2
Q ss_pred ccccccccceeeccCChhhhhhHHHHhccccCCchhh-HHHHHCC----CcHHHHHHhccCChHHHHHHHHHHHhhhccC
Q 001385 366 DENAVRQLISMISSDNRHVVEQACSALSSLAGDVSVA-MLLMKCD----IMQPIIAVLKSFAPEEVKSVLQVVGQLAFAS 440 (1088)
Q Consensus 366 ~~~~Lp~L~~L~Ls~N~~v~~~a~~~L~~L~~~~~~~-~~l~~~~----~~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~s 440 (1088)
|-.-+|.|..+.-+.....++.|+.+|..|+.|+.+. +.-.... .++..+...+++.+.....++.|+..++...
T Consensus 126 wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~ 205 (885)
T KOG2023|consen 126 WPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQ 205 (885)
T ss_pred chhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecC
Confidence 3345788888888888889999999999999988777 3322233 2344477778888888888999998877533
Q ss_pred hHHHHHHhhhhhHHHHHHHhcCCChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcCCchhHHHHHHHHHHhh
Q 001385 441 DTVAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAIL 520 (1088)
Q Consensus 441 d~~~~~v~~~g~lp~L~~Ll~~~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l 520 (1088)
......-++ -.+..|-.|-...+++||+..++++..+.-....+.. -.-.++++..+......++.|--|||.-..-+
T Consensus 206 ~qal~~~iD-~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~-phl~~IveyML~~tqd~dE~VALEACEFwla~ 283 (885)
T KOG2023|consen 206 TQALYVHID-KFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLV-PHLDNIVEYMLQRTQDVDENVALEACEFWLAL 283 (885)
T ss_pred cHHHHHHHH-HHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcc-cchHHHHHHHHHHccCcchhHHHHHHHHHHHH
Confidence 222212122 2345555566788999999999998766433333221 11235666666777778888888898877666
Q ss_pred cchH
Q 001385 521 GENE 524 (1088)
Q Consensus 521 ~~~~ 524 (1088)
++.+
T Consensus 284 aeqp 287 (885)
T KOG2023|consen 284 AEQP 287 (885)
T ss_pred hcCc
Confidence 6654
No 187
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.12 E-value=0.38 Score=49.46 Aligned_cols=34 Identities=12% Similarity=-0.014 Sum_probs=16.8
Q ss_pred ccEEEeeCCCCCCCCccccccCccccEEeCcCCC
Q 001385 127 LRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSG 160 (1088)
Q Consensus 127 L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~ 160 (1088)
++.+|-++..|...--+.+.+++.|+.|.+.+|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck 136 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCK 136 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheecccc
Confidence 3445555554443322344555555555555554
No 188
>PF01735 PLA2_B: Lysophospholipase catalytic domain; InterPro: IPR002642 This family consists of lysophospholipase / phospholipase B 3.1.1.5 from EC and cytosolic phospholipase A2 which also has a C2 domain IPR000008 from INTERPRO. Phospholipase B enzymes catalyse the release of fatty acids from lysophsopholipids and are capable in vitro of hydrolyzing all phospholipids extractable from yeast cells []. Cytosolic phospholipase A2 associates with natural membranes in response to physiological increases in Ca2+ and selectively hydrolyses arachidonyl phospholipids [], the aligned region corresponds the carboxy-terminal Ca2+-independent catalytic domain of the protein as discussed in [].; GO: 0004620 phospholipase activity, 0009395 phospholipid catabolic process; PDB: 1CJY_B.
Probab=74.73 E-value=3.5 Score=49.52 Aligned_cols=51 Identities=18% Similarity=0.309 Sum_probs=34.7
Q ss_pred EEEecCCCchHHH-HHHHHHHHHHhcC-----CCCCcccceEEecchHHHHHHHHhc
Q 001385 542 ILSMDGGGMKGLA-TVQILKEIEKGTG-----KRIHELFDLVCGTSTGGMLAIALAV 592 (1088)
Q Consensus 542 iLsLdGGG~RG~~-~~~vL~~Le~~~~-----~~i~~~FDli~GTStG~iiA~~l~~ 592 (1088)
.++++|||.|.+. .+|+|.++..+.. ..+.+..++++|.|-|+-....|+.
T Consensus 2 aia~SGGG~RAml~gaG~l~Ald~R~~~~~~~gGLLq~~tY~sGlSGgsW~~~sl~~ 58 (491)
T PF01735_consen 2 AIAGSGGGYRAMLAGAGVLSALDSRNPGANGTGGLLQCATYISGLSGGSWLVGSLYS 58 (491)
T ss_dssp EEEE---HHHHHHHHHHHHHHHH--------HCS-GGGECEEEE-HHHHHHHHHH--
T ss_pred eEEecCchHHHHHHHHHHHHHhhhhccccccccchhhhhhhhhhcCcchhhhhhhhh
Confidence 4789999999776 8999999993321 1578999999999999998877753
No 189
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=74.01 E-value=9.6 Score=40.80 Aligned_cols=142 Identities=18% Similarity=0.164 Sum_probs=85.8
Q ss_pred eccCChhhhhhHHHHhccccCCchhhHHHHHCCCcHHHHHHhccCChHHHHHHHHHHHhhhccChHHHHHHhhhhh-HHH
Q 001385 377 ISSDNRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDV-LKS 455 (1088)
Q Consensus 377 ~Ls~N~~v~~~a~~~L~~L~~~~~~~~~l~~~~~~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd~~~~~v~~~g~-lp~ 455 (1088)
..+.+..+...+|..+..+.........-+-..+++.|+..+.+...-....+..+|..++..... ...+ ++.
T Consensus 62 l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~------~~~~~~~~ 135 (228)
T PF12348_consen 62 LSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSY------SPKILLEI 135 (228)
T ss_dssp S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--------HHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCc------HHHHHHHH
Confidence 334456688889988888885444332233444566777777776666666678888877754321 1122 566
Q ss_pred HHHHhcCCChhHHHHHHHHHhhhhccccccceeecc----cChhhhhHhhhcCCchhHHHHHHHHHHhhcchH
Q 001385 456 LKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTS----ESLRDLLMRLTVGPEPRVNKAAARALAILGENE 524 (1088)
Q Consensus 456 L~~Ll~~~~~~vq~~Al~algnla~~~~~~~~~v~~----~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 524 (1088)
+.....++++.++..++..+..+..........+.. ..+.+.+..++...+++|++.|..++..+..+.
T Consensus 136 l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~ 208 (228)
T PF12348_consen 136 LSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHF 208 (228)
T ss_dssp HHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
Confidence 777888999999998888877664444311111111 347788899999999999999999998886553
No 190
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=72.10 E-value=5.7 Score=46.56 Aligned_cols=116 Identities=20% Similarity=0.167 Sum_probs=78.7
Q ss_pred cHHHHHHhccCChHHHHHHHHHHHhhhccChHHHHHHhhhhhHHHHHHHhcCCChhHHHHHHHHHhhhhccccccceeec
Q 001385 411 MQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVT 490 (1088)
Q Consensus 411 ~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd~~~~~v~~~g~lp~L~~Ll~~~~~~vq~~Al~algnla~~~~~~~~~v~ 490 (1088)
+..++..|.+.++.+...+..+|..+- ...+.+.|..++.+.++.++..++.+++..
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~-----------~~~a~~~L~~~L~~~~p~vR~aal~al~~r------------ 144 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLG-----------GRQAEPWLEPLLAASEPPGRAIGLAALGAH------------ 144 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCC-----------chHHHHHHHHHhcCCChHHHHHHHHHHHhh------------
Confidence 556666776666666666666665433 346688999999999999998888887761
Q ss_pred ccChhhhhHhhhcCCchhHHHHHHHHHHhhcchHHHHHhhhcCCCCCCCceEEEecCCC
Q 001385 491 SESLRDLLMRLTVGPEPRVNKAAARALAILGENESLRRAIRGRQVPKQGLRILSMDGGG 549 (1088)
Q Consensus 491 ~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~r~~~~~~~~~~~~~riLsLdGGG 549 (1088)
.....+.+..++.+.++.|+.+|..++..++.............-....+|.-++.|++
T Consensus 145 ~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~~a~~~L~~al~d~~~~VR~aA~~al~ 203 (410)
T TIGR02270 145 RHDPGPALEAALTHEDALVRAAALRALGELPRRLSESTLRLYLRDSDPEVRFAALEAGL 203 (410)
T ss_pred ccChHHHHHHHhcCCCHHHHHHHHHHHHhhccccchHHHHHHHcCCCHHHHHHHHHHHH
Confidence 12234678888899999999999999999987654443333333334445544444443
No 191
>smart00022 PLAc Cytoplasmic phospholipase A2, catalytic subunit. Cytosolic phospholipases A2 hydrolyse arachidonyl phospholipids. Family includes phospholipases B isoforms.
Probab=72.00 E-value=3.4 Score=49.88 Aligned_cols=58 Identities=22% Similarity=0.335 Sum_probs=47.5
Q ss_pred CceEEEecCCCchHHH-HHHHHHHHHHhcC----CCCCcccceEEecchHHHHHHHHhcCCCC
Q 001385 539 GLRILSMDGGGMKGLA-TVQILKEIEKGTG----KRIHELFDLVCGTSTGGMLAIALAVKLMT 596 (1088)
Q Consensus 539 ~~riLsLdGGG~RG~~-~~~vL~~Le~~~~----~~i~~~FDli~GTStG~iiA~~l~~~~~s 596 (1088)
+.-.++++|||.|.+. .+|+|+++.++.. -.+.+.-.+++|-|-|+.+...++...++
T Consensus 76 P~Igia~SGGGyRAml~gaG~l~ald~R~~~~~lgGLLq~~tYlaGlSGgsWlv~sl~~nnf~ 138 (549)
T smart00022 76 PVIAIAGSGGGFRAMVGGAGVLKAMDNRTDGHGLGGLLQSATYLAGLSGGTWLVGTLASNNFT 138 (549)
T ss_pred ceEEEEecCCCHHHHHhccHHHHHhhhcccccccccHhhhhhhhhccchHHHHHHHHhhCCCc
Confidence 4567999999999877 8999999988532 24678889999999999998888766544
No 192
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=71.85 E-value=11 Score=42.84 Aligned_cols=151 Identities=17% Similarity=0.179 Sum_probs=98.0
Q ss_pred cCChhhhhhHHHHhccccCCchhh-HHHHH------CCCcHHHHHHhccCChHHHHHHHHHHHhhhccChHHHHHHhhhh
Q 001385 379 SDNRHVVEQACSALSSLAGDVSVA-MLLMK------CDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKD 451 (1088)
Q Consensus 379 s~N~~v~~~a~~~L~~L~~~~~~~-~~l~~------~~~~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd~~~~~v~~~g 451 (1088)
+.+..+..-.+..+..+..+.+.. ..+.. .....+++.++.+.+......++..|..++-..+....... .+
T Consensus 68 ~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~-~~ 146 (312)
T PF03224_consen 68 SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLV-KE 146 (312)
T ss_dssp ---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHH-HH
T ss_pred cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchH-HH
Confidence 466667777777777777655544 33332 12567888888888888788899999988754443332211 56
Q ss_pred hHHHHHHHhcC----CChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhh-------cCCchhHHHHHHHHHHhh
Q 001385 452 VLKSLKLLCAH----KNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLT-------VGPEPRVNKAAARALAIL 520 (1088)
Q Consensus 452 ~lp~L~~Ll~~----~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll-------~~~~~~v~~~a~~aL~~l 520 (1088)
+++.+...+.+ .+..++..|+.+++++....+.|..+. +++..+.++.++ ......+..+++.|+=.+
T Consensus 147 ~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~-~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlL 225 (312)
T PF03224_consen 147 ALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFW-KSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLL 225 (312)
T ss_dssp HHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHH-THHHHHHHHHHHH---------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHH-hcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHH
Confidence 66777666554 455677789999999988888877766 678888888888 344567889999999999
Q ss_pred cchHHHHHhhh
Q 001385 521 GENESLRRAIR 531 (1088)
Q Consensus 521 ~~~~~~r~~~~ 531 (1088)
..++.....+.
T Consensus 226 SF~~~~~~~~~ 236 (312)
T PF03224_consen 226 SFEPEIAEELN 236 (312)
T ss_dssp TTSHHHHHHHH
T ss_pred hcCHHHHHHHh
Confidence 99988777665
No 193
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.06 E-value=27 Score=40.50 Aligned_cols=144 Identities=16% Similarity=0.181 Sum_probs=91.8
Q ss_pred hHHHHhccccCCchhh-HHHHHCCCcHHHHHHhccCCh--HHHHHHHHHHHhhhccChHHHHHHhhhhhHHHHHHHhcC-
Q 001385 387 QACSALSSLAGDVSVA-MLLMKCDIMQPIIAVLKSFAP--EEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAH- 462 (1088)
Q Consensus 387 ~a~~~L~~L~~~~~~~-~~l~~~~~~~~Ll~lL~~~~~--~~~~~~l~~L~~L~~~sd~~~~~v~~~g~lp~L~~Ll~~- 462 (1088)
+.+-+++++....-.. ..+.+...++-+-+.|..... +.+....-+++..+ .++..+..+...++++.|++|+..
T Consensus 524 EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a-~d~~cA~Lla~a~~i~tlieLL~a~ 602 (791)
T KOG1222|consen 524 ECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMA-RDLDCARLLAPAKLIDTLIELLQAC 602 (791)
T ss_pred HHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhh-hhhHHHHHhCccccHHHHHHHHHhh
Confidence 4445666666543334 555566777776666655432 33333333344444 444456667778999999999985
Q ss_pred -CChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcCCchhHHHHHHHHHHhhcchH-HHHHhhh
Q 001385 463 -KNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGENE-SLRRAIR 531 (1088)
Q Consensus 463 -~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~-~~r~~~~ 531 (1088)
.+.+....-+...-.+.++...|.-+..+......++.++...+.+|++-.--|+.+++++. +-.+.|+
T Consensus 603 QeDDEfV~QiiyVF~Q~l~He~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d~EWAKrI~ 673 (791)
T KOG1222|consen 603 QEDDEFVVQIIYVFLQFLKHELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHDKEWAKRIA 673 (791)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 34444333455555667776666555555566778899999999999999889999998774 3333343
No 194
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=69.47 E-value=18 Score=33.19 Aligned_cols=88 Identities=20% Similarity=0.188 Sum_probs=58.9
Q ss_pred HHHHHHhhhccChHHHHHHhhhhhHHHHHHHhcCCChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcCCchh
Q 001385 429 VLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPR 508 (1088)
Q Consensus 429 ~l~~L~~L~~~sd~~~~~v~~~g~lp~L~~Ll~~~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~~~~~ 508 (1088)
++-+|...+..-...+..-+ ..++|.+...+.+.+.+|+-.|+.++.|++....... +..-..+.+.|.++....++.
T Consensus 6 gli~Laa~ai~l~~~~~~~l-~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~-l~~f~~IF~~L~kl~~D~d~~ 83 (97)
T PF12755_consen 6 GLIGLAAVAIALGKDISKYL-DEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEI-LPYFNEIFDALCKLSADPDEN 83 (97)
T ss_pred HHHHHHHHHHHchHhHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCchh
Confidence 44444444333222232222 3478888889999999999999999999975553322 112346778889999999999
Q ss_pred HHHHHHHHHH
Q 001385 509 VNKAAARALA 518 (1088)
Q Consensus 509 v~~~a~~aL~ 518 (1088)
|+..|+.-..
T Consensus 84 Vr~~a~~Ld~ 93 (97)
T PF12755_consen 84 VRSAAELLDR 93 (97)
T ss_pred HHHHHHHHHH
Confidence 9887765443
No 195
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=67.42 E-value=22 Score=44.47 Aligned_cols=101 Identities=24% Similarity=0.252 Sum_probs=78.2
Q ss_pred HHHHHhccCChHHHHHHHHHHHhhhccChHHHHHHhhhhhHHHHHHHhcCCChhHHHHHHHHHhhhhccccccceeeccc
Q 001385 413 PIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSE 492 (1088)
Q Consensus 413 ~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd~~~~~v~~~g~lp~L~~Ll~~~~~~vq~~Al~algnla~~~~~~~~~v~~~ 492 (1088)
.+..-+.++++..+..+++.+..+-- .++.+ -+++.+++++.+.++.|++.|..|++.+-.-... .+.++
T Consensus 96 ti~kDl~d~N~~iR~~AlR~ls~l~~------~el~~-~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~---l~~~~ 165 (757)
T COG5096 96 TIQKDLQDPNEEIRGFALRTLSLLRV------KELLG-NIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKD---LYHEL 165 (757)
T ss_pred HHHhhccCCCHHHHHHHHHHHHhcCh------HHHHH-HHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHh---hhhcc
Confidence 34455678888888889998876651 12222 3688999999999999999999999987433332 45577
Q ss_pred ChhhhhHhhhcCCchhHHHHHHHHHHhhcch
Q 001385 493 SLRDLLMRLTVGPEPRVNKAAARALAILGEN 523 (1088)
Q Consensus 493 ~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 523 (1088)
|..+.+..++...++.+..+|..++.-+...
T Consensus 166 g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 166 GLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred cHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 8999999999999999999999999887654
No 196
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=66.41 E-value=3.7 Score=27.64 Aligned_cols=16 Identities=19% Similarity=0.472 Sum_probs=8.3
Q ss_pred CccEEEccCCCCCCcc
Q 001385 175 TVTAVSLCGLGLSALP 190 (1088)
Q Consensus 175 ~L~~L~Ls~n~l~~lp 190 (1088)
+|+.|++++|+|+.+|
T Consensus 3 ~L~~L~vs~N~Lt~LP 18 (26)
T smart00364 3 SLKELNVSNNQLTSLP 18 (26)
T ss_pred ccceeecCCCccccCc
Confidence 3455555555555554
No 197
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=65.69 E-value=15 Score=36.91 Aligned_cols=100 Identities=21% Similarity=0.193 Sum_probs=66.3
Q ss_pred hccCChHHHHHHHHHHHhhhccChHHHH-HHhhhhhHHHHHHHhc--CCChhHHHHHHHHHhhhhccccccceeecccCh
Q 001385 418 LKSFAPEEVKSVLQVVGQLAFASDTVAQ-KMLTKDVLKSLKLLCA--HKNPEVQRFALLAVGNLAFCLENRRILVTSESL 494 (1088)
Q Consensus 418 L~~~~~~~~~~~l~~L~~L~~~sd~~~~-~v~~~g~lp~L~~Ll~--~~~~~vq~~Al~algnla~~~~~~~~~v~~~~~ 494 (1088)
+.....+....++.++..+.-....... .....|.++.+..++. ..+..+|..++.++.. +...++.+..+ ....
T Consensus 52 ~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~a-Ac~d~~~r~~I-~~~~ 129 (157)
T PF11701_consen 52 LDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSA-ACIDKSCRTFI-SKNY 129 (157)
T ss_dssp HCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHH-HTTSHHHHHCC-HHHC
T ss_pred HccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHH-HHccHHHHHHH-HHHH
Confidence 3333334566677777777655444444 4456899999999999 7888899888887764 45556666655 4456
Q ss_pred hhhhHhhhc-CCchh-HHHHHHHHHHh
Q 001385 495 RDLLMRLTV-GPEPR-VNKAAARALAI 519 (1088)
Q Consensus 495 ~~~L~~ll~-~~~~~-v~~~a~~aL~~ 519 (1088)
.++|-.+.. +.+.. ++-.|.-+|..
T Consensus 130 ~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 130 VSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHHHHHHHccccchHHHHHHHHHHHhc
Confidence 699998885 44455 67777766654
No 198
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=65.64 E-value=48 Score=37.86 Aligned_cols=144 Identities=13% Similarity=0.139 Sum_probs=106.1
Q ss_pred ChhhhhhHHHHhccccCCchhhHHHHHCCCcHHHHHHhccCChHHHHHHHHHHHhhhccChHHHHHHhhh---hhHHHHH
Q 001385 381 NRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTK---DVLKSLK 457 (1088)
Q Consensus 381 N~~v~~~a~~~L~~L~~~~~~~~~l~~~~~~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd~~~~~v~~~---g~lp~L~ 457 (1088)
++.+.-..-..|.....+...+..++.......+...+..+.-++...++..+..+...+.......+.. .......
T Consensus 136 ~~dial~~g~mlRec~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~ 215 (335)
T PF08569_consen 136 NPDIALNCGDMLRECIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYN 215 (335)
T ss_dssp STTTHHHHHHHHHHHTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHH
T ss_pred CccccchHHHHHHHHHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444566666666666777777788888888888888888889999999887666554444443 3466888
Q ss_pred HHhcCCChhHHHHHHHHHhhhhccccccc---eeecccChhhhhHhhhcCCchhHHHHHHHHHHhhcchH
Q 001385 458 LLCAHKNPEVQRFALLAVGNLAFCLENRR---ILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGENE 524 (1088)
Q Consensus 458 ~Ll~~~~~~vq~~Al~algnla~~~~~~~---~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 524 (1088)
.|+.+.+.-.++.++.-+|.+-....+.. +.+.+...+..++.++.++...++-+|.........++
T Consensus 216 ~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp 285 (335)
T PF08569_consen 216 KLLESSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANP 285 (335)
T ss_dssp HHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-S
T ss_pred HHccCCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCC
Confidence 99999999999999999999988887764 55667778888999999999999999998887765553
No 199
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=65.46 E-value=5.6 Score=46.62 Aligned_cols=70 Identities=23% Similarity=0.228 Sum_probs=60.6
Q ss_pred hhHHHHHHHhc-CCChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcCCchhHHHHHHHHHHhh
Q 001385 451 DVLKSLKLLCA-HKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAIL 520 (1088)
Q Consensus 451 g~lp~L~~Ll~-~~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l 520 (1088)
.++..|..++. +.++.+..-||.-+|.++....+.+.++..-|+...+|.++.+++++|+++|..|+..+
T Consensus 353 ~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQkl 423 (429)
T cd00256 353 ELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKL 423 (429)
T ss_pred HHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 36788999984 55666666688889999999999999988899999999999999999999999998765
No 200
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=65.40 E-value=32 Score=44.30 Aligned_cols=127 Identities=17% Similarity=0.155 Sum_probs=86.5
Q ss_pred cCChhhhhhHHHHhccccCCchhh-HHHHHCCCcHHHHHHhccCC-hHHHHHHHHHHHhhhccChHHHHHHhhhhhHH-H
Q 001385 379 SDNRHVVEQACSALSSLAGDVSVA-MLLMKCDIMQPIIAVLKSFA-PEEVKSVLQVVGQLAFASDTVAQKMLTKDVLK-S 455 (1088)
Q Consensus 379 s~N~~v~~~a~~~L~~L~~~~~~~-~~l~~~~~~~~Ll~lL~~~~-~~~~~~~l~~L~~L~~~sd~~~~~v~~~g~lp-~ 455 (1088)
...+.|+-.||.++|.++.+...- ..-...-+.+.|+..+.+.. +.++.++..++.++.-..+...-.-.=.++|. .
T Consensus 400 DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~ 479 (1075)
T KOG2171|consen 400 DPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKK 479 (1075)
T ss_pred CCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 355789999999999999876666 55666666667777776655 45667788888777644333322222235666 7
Q ss_pred HHHHhcCCChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcCCc
Q 001385 456 LKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPE 506 (1088)
Q Consensus 456 L~~Ll~~~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~~~ 506 (1088)
|..|+.+..+.+|..+..++|..|+...+.-.-- -..++|.|.+++...+
T Consensus 480 l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY-~d~~Mp~L~~~L~n~~ 529 (1075)
T KOG2171|consen 480 LLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPY-FDRLMPLLKNFLQNAD 529 (1075)
T ss_pred HHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhH-HHHHHHHHHHHHhCCC
Confidence 7778888999999999999998876655432111 1235677777776555
No 201
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=64.41 E-value=4.3 Score=27.36 Aligned_cols=17 Identities=41% Similarity=0.735 Sum_probs=9.6
Q ss_pred CCcEEEccCCCCCCCch
Q 001385 198 VLEKLYLDNNKLSTLPP 214 (1088)
Q Consensus 198 ~L~~L~L~~N~l~~lp~ 214 (1088)
+|+.|++++|+++.+|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 45556666666655553
No 202
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=64.40 E-value=8.3 Score=46.81 Aligned_cols=138 Identities=20% Similarity=0.191 Sum_probs=92.6
Q ss_pred CChhhhhhHHHHhccccCCchhh---HHHHHCCCcHHHHHHhccCChHHHHHHHHHHHhhhccChHHHHHHhh--hhhHH
Q 001385 380 DNRHVVEQACSALSSLAGDVSVA---MLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLT--KDVLK 454 (1088)
Q Consensus 380 ~N~~v~~~a~~~L~~L~~~~~~~---~~l~~~~~~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd~~~~~v~~--~g~lp 454 (1088)
.-+.+++++...++.|+.-...| ..+-.+|++ |...|....++++...+.++..+.-.- ....++. .+++|
T Consensus 811 ksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvv--LyEylgeeypEvLgsILgAikaI~nvi--gm~km~pPi~dllP 886 (1172)
T KOG0213|consen 811 KSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVV--LYEYLGEEYPEVLGSILGAIKAIVNVI--GMTKMTPPIKDLLP 886 (1172)
T ss_pred CChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHH--HHHhcCcccHHHHHHHHHHHHHHHHhc--cccccCCChhhhcc
Confidence 44678888888888888766666 455566763 456778888999888777777665211 1112222 47899
Q ss_pred HHHHHhcCCChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcCCchhHHHHHHHHHHhhc
Q 001385 455 SLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILG 521 (1088)
Q Consensus 455 ~L~~Ll~~~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~ 521 (1088)
+|...+++....||......+|.|+--..+.....-=-.+.=-|+.++.+....++++|...+.+++
T Consensus 887 rltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~Ia 953 (1172)
T KOG0213|consen 887 RLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIA 953 (1172)
T ss_pred cchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 9999999999999999999999987655543221100011112566667777778888877776665
No 203
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=64.35 E-value=10 Score=46.37 Aligned_cols=120 Identities=17% Similarity=0.122 Sum_probs=81.1
Q ss_pred HHHHHCCCcHHHHHHh----ccCChHHHHHHHHHHHhhhccChHHHHHHhhhhhHHHHHHHhcCCChhHHHHHHHHHhhh
Q 001385 403 MLLMKCDIMQPIIAVL----KSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNL 478 (1088)
Q Consensus 403 ~~l~~~~~~~~Ll~lL----~~~~~~~~~~~l~~L~~L~~~sd~~~~~v~~~g~lp~L~~Ll~~~~~~vq~~Al~algnl 478 (1088)
..+..-+++++.+..+ ++++......+.=+++.+...-+.....-+..+++|.++.++......++.-+.|++|.+
T Consensus 354 A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI 433 (859)
T KOG1241|consen 354 AQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRI 433 (859)
T ss_pred HHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHH
Confidence 4455556666665544 455555555555556666666666666677789999999999988888888889999998
Q ss_pred hccccccc-eeecccChhhhhHhhhcCCchhHHHHHHHHHHhhcch
Q 001385 479 AFCLENRR-ILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGEN 523 (1088)
Q Consensus 479 a~~~~~~~-~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 523 (1088)
+-+..+.. ..+.-.....+++.-+ ..+|++-.++||++-.+++.
T Consensus 434 ~d~l~e~~~n~~~l~~~l~~l~~gL-~DePrva~N~CWAf~~Laea 478 (859)
T KOG1241|consen 434 ADFLPEAIINQELLQSKLSALLEGL-NDEPRVASNVCWAFISLAEA 478 (859)
T ss_pred HhhchhhcccHhhhhHHHHHHHHHh-hhCchHHHHHHHHHHHHHHH
Confidence 65544321 1221223445555443 46789999999999888855
No 204
>KOG1325 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=64.12 E-value=3.3 Score=49.36 Aligned_cols=60 Identities=22% Similarity=0.294 Sum_probs=47.1
Q ss_pred CceEEEecCCCchHHH-HHHHHHHHHHhcCC----CCCcccceEEecchHHHHHHHHhcCCCCHH
Q 001385 539 GLRILSMDGGGMKGLA-TVQILKEIEKGTGK----RIHELFDLVCGTSTGGMLAIALAVKLMTLD 598 (1088)
Q Consensus 539 ~~riLsLdGGG~RG~~-~~~vL~~Le~~~~~----~i~~~FDli~GTStG~iiA~~l~~~~~s~~ 598 (1088)
++-.++.+|||.|.+. -.|+|.++.++.+- .+.+..++|+|.|-|.-+-.-|+.......
T Consensus 48 P~vaIa~SGGG~RAMl~g~G~Laamder~~~~~l~GLLqs~tYlaGlSGstW~vssLa~nn~~s~ 112 (571)
T KOG1325|consen 48 PVVGIAGSGGGLRAMLSGAGALAAMDERTDNAGLGGLLQSATYLAGLSGGSWLVSSLAVNNFTSI 112 (571)
T ss_pred CeEEEEecCCCHHHHhhhhHHHHHHHhhccCCcccchhhhhhhhcccCCCceeeeeeEECCchHh
Confidence 4567889999999988 67999999776321 467889999999999998888876644433
No 205
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=62.58 E-value=8.6 Score=46.96 Aligned_cols=148 Identities=17% Similarity=0.177 Sum_probs=104.9
Q ss_pred ccccceeeccCChhhhhhHHHHhccccCCchhhHHHHHCCCcHHHHHHhccCChHHHHHHHHHHHhhhccChHHHHHHhh
Q 001385 370 VRQLISMISSDNRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLT 449 (1088)
Q Consensus 370 Lp~L~~L~Ls~N~~v~~~a~~~L~~L~~~~~~~~~l~~~~~~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd~~~~~v~~ 449 (1088)
.+.+..+.-+.++.|+..|+.++..+....++. +... +++.+..++.+.++.++..++.++..+ ..++.... -+-
T Consensus 116 ~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~--~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~-~~~ 190 (526)
T PF01602_consen 116 IPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL--VEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYK-SLI 190 (526)
T ss_dssp HHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC--HHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHT-THH
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH--HHHH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhh-hhH
Confidence 456677777889999999998888887543332 1122 467778888888888888899888888 23333221 233
Q ss_pred hhhHHHHHHHhcCCChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcCCchhHHHHHHHHHHhhcchHH
Q 001385 450 KDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGENES 525 (1088)
Q Consensus 450 ~g~lp~L~~Ll~~~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 525 (1088)
......|..++...++..|...++.+..++........- ..+.+.+..++.+..+.|.-+++.++..+...+.
T Consensus 191 ~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~ 263 (526)
T PF01602_consen 191 PKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE 263 (526)
T ss_dssp HHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH
T ss_pred HHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH
Confidence 455677777778899999998999988776544443311 3466777777788888899899988888777765
No 206
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=62.47 E-value=5.6 Score=26.85 Aligned_cols=19 Identities=37% Similarity=0.422 Sum_probs=12.2
Q ss_pred CCCCeEEeeCCCCCCCccc
Q 001385 288 LKLRHLSLANIRIVADENL 306 (1088)
Q Consensus 288 ~~L~~L~L~~N~l~~~~~l 306 (1088)
.+|+.|+|++|+|+.++++
T Consensus 2 ~~L~~L~L~~NkI~~IEnL 20 (26)
T smart00365 2 TNLEELDLSQNKIKKIENL 20 (26)
T ss_pred CccCEEECCCCccceecCc
Confidence 4667777777777655444
No 207
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=61.35 E-value=8 Score=45.97 Aligned_cols=141 Identities=16% Similarity=0.100 Sum_probs=91.0
Q ss_pred cCChhhhhhHHHHhccccCCchhh---HHHHHCCCcHHHHHHhccCChHHHHHHHHHHHhhhccChHHHHHHhhhhhHHH
Q 001385 379 SDNRHVVEQACSALSSLAGDVSVA---MLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKS 455 (1088)
Q Consensus 379 s~N~~v~~~a~~~L~~L~~~~~~~---~~l~~~~~~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd~~~~~v~~~g~lp~ 455 (1088)
+.-+.++..+....+.|+.-...| ..+..+|.+ |..-|....++++...+.++..+.-.-+.....-=-.|++|+
T Consensus 615 ~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~i--LyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ 692 (975)
T COG5181 615 SKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNI--LYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPISGILPS 692 (975)
T ss_pred CCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHH--HHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCchhhcccc
Confidence 344667777777777777655555 556667653 445677777888877777776554221111111112488999
Q ss_pred HHHHhcCCChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcCCchhHHHHHHHHHHhhc
Q 001385 456 LKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILG 521 (1088)
Q Consensus 456 L~~Ll~~~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~ 521 (1088)
|...++++...|+..+..-+|-|+.-..+....--=-.+.=-|+..+.+.+.++++.|...+.+++
T Consensus 693 ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is 758 (975)
T COG5181 693 LTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCIS 758 (975)
T ss_pred ccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHH
Confidence 999999999999999998899887766653221100011112566677788888888887776665
No 208
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.27 E-value=1.9 Score=44.50 Aligned_cols=32 Identities=34% Similarity=0.374 Sum_probs=16.2
Q ss_pred ccccEEEecCC-CCC--CCccccCCCCCCeEEeeC
Q 001385 266 AELKILRLFGN-PLE--FLPEILPLLKLRHLSLAN 297 (1088)
Q Consensus 266 ~~L~~L~Ls~N-~l~--~l~~l~~l~~L~~L~L~~ 297 (1088)
++|+.|+|++| +|+ .+..+..+++|+.|.|.+
T Consensus 151 ~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 151 PSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred cchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 45566666654 244 333445555555555443
No 209
>cd07203 cPLA2_Fungal_PLB Fungal Phospholipase B-like; cPLA2 GrpIVA homologs; catalytic domain. Fungal phospholipase B are Group IV cPLA2 homologs. Aspergillus PLA2 is Ca-dependent, yet it does not contain a C2 domain. PLB deacylates both sn-1 and sn-2 chains of phospholipids and are abundantly expressed in fungi. It shows lysophospholipase (lysoPL) and transacylase activities. The active site residues from cPLA2 are also conserved in PLB. Like cPLA2, PLB also has a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). It includes PLB1 from Schizosaccharomyces pombe, PLB2 from Candida glabrata, and PLB3 from Saccharomyces cerevisiae. PLB1, PLB2, and PLB3 show PLB and lysoPL activities; PLB3 is specific for phosphoinositides.
Probab=60.79 E-value=4.9 Score=48.24 Aligned_cols=63 Identities=17% Similarity=0.235 Sum_probs=49.2
Q ss_pred CceEEEecCCCchHHH-HHHHHHHHHHhcC-------CCCCcccceEEecchHHHHHHHHhcCCCC-HHHHH
Q 001385 539 GLRILSMDGGGMKGLA-TVQILKEIEKGTG-------KRIHELFDLVCGTSTGGMLAIALAVKLMT-LDQCE 601 (1088)
Q Consensus 539 ~~riLsLdGGG~RG~~-~~~vL~~Le~~~~-------~~i~~~FDli~GTStG~iiA~~l~~~~~s-~~e~~ 601 (1088)
+.-.++++|||.|.+. -+|+|+++..++. -.+.+.-.+|+|-|-|+-+...|+...++ ++++.
T Consensus 63 P~Igia~SGGGyRAMl~GaG~l~AlD~Rt~~~~~~glgGLLQsatYlaGLSGGsWlvgSl~~Nnf~sv~~l~ 134 (552)
T cd07203 63 PRIGIAVSGGGYRAMLTGAGAIAAMDNRTDNATEHGLGGLLQSSTYLSGLSGGSWLVGSLASNNFTSVQDLL 134 (552)
T ss_pred CeEEEEecCccHHHHHhccHHHHhhhcccccccccccccHHHHhhHhhhcCccchhhhhhhhCCCCCHHHHh
Confidence 4567999999999887 8999999986531 14678889999999999998888765444 45554
No 210
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=60.54 E-value=60 Score=32.63 Aligned_cols=116 Identities=13% Similarity=0.123 Sum_probs=86.1
Q ss_pred HHHHHCCCcHHHHHHhccCCh------HHHHHHHHHHHhhhccChHHHHHHhhhhhHHHHHHHhcCC--ChhHHHHHHHH
Q 001385 403 MLLMKCDIMQPIIAVLKSFAP------EEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHK--NPEVQRFALLA 474 (1088)
Q Consensus 403 ~~l~~~~~~~~Ll~lL~~~~~------~~~~~~l~~L~~L~~~sd~~~~~v~~~g~lp~L~~Ll~~~--~~~vq~~Al~a 474 (1088)
...++.+++.-|+.++.+... +....+++++.+|.-+. ......++...+.+....+... ++.++..|+..
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg-~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI 83 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHG-IVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAI 83 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcC-cCchhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence 456778888888888876552 55566789888888553 3344677777888888887753 57898889999
Q ss_pred HhhhhccccccceeecccChhhhhHhhhcCCchhHHHHHHHHHHh
Q 001385 475 VGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAI 519 (1088)
Q Consensus 475 lgnla~~~~~~~~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~ 519 (1088)
+-+++..+...-+.|..+=-.+-|+..+...+.+++.+|..-+..
T Consensus 84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinA 128 (160)
T PF11841_consen 84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINA 128 (160)
T ss_pred HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999998888867767565556778888888888888877654433
No 211
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=59.18 E-value=32 Score=39.71 Aligned_cols=124 Identities=11% Similarity=0.080 Sum_probs=88.1
Q ss_pred HHHHHCCCcHHHHHHhccCChHH--HHHHHHHHHhhhccChHHHHHHhh--hhhHHHHHHHhcCCChhHHHHHHHHHhhh
Q 001385 403 MLLMKCDIMQPIIAVLKSFAPEE--VKSVLQVVGQLAFASDTVAQKMLT--KDVLKSLKLLCAHKNPEVQRFALLAVGNL 478 (1088)
Q Consensus 403 ~~l~~~~~~~~Ll~lL~~~~~~~--~~~~l~~L~~L~~~sd~~~~~v~~--~g~lp~L~~Ll~~~~~~vq~~Al~algnl 478 (1088)
+++...|.+.-|++++..++.+. ...+.+.|.++.-..+ ...+.. .|++=.|.+ ..+.++.++..+..++|+
T Consensus 174 D~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~aeN--~d~va~~~~~~Il~lAK--~~e~~e~aR~~~~il~~m 249 (832)
T KOG3678|consen 174 DAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVAEN--RDRVARIGLGVILNLAK--EREPVELARSVAGILEHM 249 (832)
T ss_pred hHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhhh--hhHHhhccchhhhhhhh--hcCcHHHHHHHHHHHHHH
Confidence 67778888999999998887665 3456777776653322 223333 333333331 235567788888889999
Q ss_pred hccccccceeecccChhhhhHhhhcCCchhHHHHHHHHHHhhcchH--HHHHhh
Q 001385 479 AFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGENE--SLRRAI 530 (1088)
Q Consensus 479 a~~~~~~~~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~--~~r~~~ 530 (1088)
-.++++--+-++.++.++.++.-....++.+-+.++.+|.+|+-+. .+++.|
T Consensus 250 FKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrm 303 (832)
T KOG3678|consen 250 FKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRM 303 (832)
T ss_pred hhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHH
Confidence 8888888777779999999888778888999999999999987553 444443
No 212
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=57.90 E-value=18 Score=31.19 Aligned_cols=62 Identities=13% Similarity=0.204 Sum_probs=48.2
Q ss_pred HHHHHHHHhhhhccccccceeecccChhhhhHhhhc-CCchhHHHHHHHHHHhhcchHHHHHhh
Q 001385 468 QRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTV-GPEPRVNKAAARALAILGENESLRRAI 530 (1088)
Q Consensus 468 q~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~~r~~~ 530 (1088)
.+.|++|+||++. .+.-.+++.+.++.+.++++.. ++...+|--+..++..++..++-.+..
T Consensus 4 lKaaLWaighIgs-s~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L 66 (73)
T PF14668_consen 4 LKAALWAIGHIGS-SPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEIL 66 (73)
T ss_pred HHHHHHHHHhHhc-ChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHH
Confidence 4679999999966 3444555557789999999886 566789999999999999887665543
No 213
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=54.79 E-value=24 Score=32.63 Aligned_cols=63 Identities=14% Similarity=0.330 Sum_probs=52.4
Q ss_pred HHHHHHHHhhhccChHHHHHHhhhhhHHHHHHHhc--CCChhHHHHHHHHHhhhhccccccceee
Q 001385 427 KSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCA--HKNPEVQRFALLAVGNLAFCLENRRILV 489 (1088)
Q Consensus 427 ~~~l~~L~~L~~~sd~~~~~v~~~g~lp~L~~Ll~--~~~~~vq~~Al~algnla~~~~~~~~~v 489 (1088)
...++.+.++++.+......+.+.|.+|.+...+. ..+|-++.-|+.++.|+..++.+-++++
T Consensus 4 ~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I 68 (102)
T PF09759_consen 4 RDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFI 68 (102)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 34678899999999888889999999999988765 4678888899999999998887766654
No 214
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=54.64 E-value=41 Score=31.12 Aligned_cols=64 Identities=8% Similarity=0.007 Sum_probs=50.5
Q ss_pred hhhHHHHhccccCCchhh-HHHHHCCCcHHHHHHh--ccCChHHHHHHHHHHHhhhccChHHHHHHh
Q 001385 385 VEQACSALSSLAGDVSVA-MLLMKCDIMQPIIAVL--KSFAPEEVKSVLQVVGQLAFASDTVAQKML 448 (1088)
Q Consensus 385 ~~~a~~~L~~L~~~~~~~-~~l~~~~~~~~Ll~lL--~~~~~~~~~~~l~~L~~L~~~sd~~~~~v~ 448 (1088)
+...++.+++++...... ..+.+.|+++.++..- ...+|-..+.++-|+.+|+..+......+.
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~ 69 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIA 69 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 456678899999888777 8899999999987764 345578888899999999987776655443
No 215
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=54.29 E-value=43 Score=39.73 Aligned_cols=143 Identities=17% Similarity=0.237 Sum_probs=100.1
Q ss_pred ccccceeeccCChhhhhhHHHHhccccCCchhhHHHHHCCCcHHHHHHhccCCh----HHHHHHHHHHHhhhccChHHHH
Q 001385 370 VRQLISMISSDNRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAP----EEVKSVLQVVGQLAFASDTVAQ 445 (1088)
Q Consensus 370 Lp~L~~L~Ls~N~~v~~~a~~~L~~L~~~~~~~~~l~~~~~~~~Ll~lL~~~~~----~~~~~~l~~L~~L~~~sd~~~~ 445 (1088)
-..+..+..++|..-+.+++..|..+..+..-+..+++++.++.+..++.+.+. +.+...+.++.++.-+.- ...
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv-vsW 163 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV-VSW 163 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-eee
Confidence 345566667788877888999999999998888999999999999998877654 334445666666553322 222
Q ss_pred HHhhhhhHHHHHHHhc--CCChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcCCchhHHHHH
Q 001385 446 KMLTKDVLKSLKLLCA--HKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAA 513 (1088)
Q Consensus 446 ~v~~~g~lp~L~~Ll~--~~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~~~~~v~~~a 513 (1088)
+.+....+.+...++. ..+..+-..|+..+-+++.+++.-.+++.++--..-|+..+...+.++...|
T Consensus 164 ~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~a 233 (713)
T KOG2999|consen 164 ESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCA 233 (713)
T ss_pred eecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHH
Confidence 3344444555555543 2344566678888889999999888888777777778888777777666553
No 216
>PTZ00429 beta-adaptin; Provisional
Probab=51.24 E-value=55 Score=41.56 Aligned_cols=134 Identities=16% Similarity=0.157 Sum_probs=88.4
Q ss_pred eeeccCChhhhhhHHHHhccccCCchhhHHHHHCCCcHHHHHHhccCChHHHHHHHHHHHhhhccChHHHHHHhhhhhHH
Q 001385 375 SMISSDNRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLK 454 (1088)
Q Consensus 375 ~L~Ls~N~~v~~~a~~~L~~L~~~~~~~~~l~~~~~~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd~~~~~v~~~g~lp 454 (1088)
.+.-+.|..++.-..-.+.+.+...++. .++. +..+..=+.++++..+..+++++..+... .+++ -+++
T Consensus 75 k~~~S~d~elKKLvYLYL~~ya~~~pel-alLa---INtl~KDl~d~Np~IRaLALRtLs~Ir~~------~i~e-~l~~ 143 (746)
T PTZ00429 75 KLAPSTDLELKKLVYLYVLSTARLQPEK-ALLA---VNTFLQDTTNSSPVVRALAVRTMMCIRVS------SVLE-YTLE 143 (746)
T ss_pred HHhCCCCHHHHHHHHHHHHHHcccChHH-HHHH---HHHHHHHcCCCCHHHHHHHHHHHHcCCcH------HHHH-HHHH
Confidence 3334455555555444455554433322 1222 22344455677777777788888877621 1222 3467
Q ss_pred HHHHHhcCCChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcCCchhHHHHHHHHHHhhcc
Q 001385 455 SLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGE 522 (1088)
Q Consensus 455 ~L~~Ll~~~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~ 522 (1088)
.+++.+.+.++-|++.|+.++..+-.... ..+...++.+.|..++...++.|...|..++..+.+
T Consensus 144 ~lkk~L~D~~pYVRKtAalai~Kly~~~p---elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~ 208 (746)
T PTZ00429 144 PLRRAVADPDPYVRKTAAMGLGKLFHDDM---QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVND 208 (746)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhCc---ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence 78888899999999999999998744333 244466888999999999999999999998887754
No 217
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=50.77 E-value=6.8 Score=46.41 Aligned_cols=63 Identities=32% Similarity=0.347 Sum_probs=43.0
Q ss_pred CCCCCcEEEccCCCCCCCc---hhhcCCCCCcEEEccCC--cCcccchhcc--CCCCCCEEEeccCCCCCC
Q 001385 195 RLPVLEKLYLDNNKLSTLP---PELGAMKNLKVLIVDNN--MLVCVPVELR--ECVGLVELSLEHNRLVRP 258 (1088)
Q Consensus 195 ~l~~L~~L~L~~N~l~~lp---~~l~~l~~L~~L~Ls~N--~l~~lp~~l~--~l~~L~~L~Ls~N~l~~~ 258 (1088)
+.+.+..++|++|+|..+. .--...++|..|+|++| .+...+ ++. +...|++|.|.+|.+...
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~-el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSES-ELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchh-hhhhhcCCCHHHeeecCCccccc
Confidence 5667788889999887543 22245788999999998 444322 232 234678999999998653
No 218
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=50.62 E-value=11 Score=24.44 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=16.7
Q ss_pred ccccceeeccCChhhhhhHHHHhc
Q 001385 370 VRQLISMISSDNRHVVEQACSALS 393 (1088)
Q Consensus 370 Lp~L~~L~Ls~N~~v~~~a~~~L~ 393 (1088)
+++|+.|++++|. +.++.+.+|+
T Consensus 1 ~~~L~~L~l~~n~-i~~~g~~~l~ 23 (24)
T PF13516_consen 1 NPNLETLDLSNNQ-ITDEGASALA 23 (24)
T ss_dssp -TT-SEEE-TSSB-EHHHHHHHHH
T ss_pred CCCCCEEEccCCc-CCHHHHHHhC
Confidence 4789999999998 8888877765
No 219
>PF05536 Neurochondrin: Neurochondrin
Probab=50.59 E-value=48 Score=40.63 Aligned_cols=99 Identities=21% Similarity=0.181 Sum_probs=74.4
Q ss_pred hhhhhHHHHhccccCCchhhHHHHHCCCcHHHHHHhccCCh-HHHHHHHHHHHhhhccChHHHHHHhhhhhHHHHHHHhc
Q 001385 383 HVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAP-EEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCA 461 (1088)
Q Consensus 383 ~v~~~a~~~L~~L~~~~~~~~~l~~~~~~~~Ll~lL~~~~~-~~~~~~l~~L~~L~~~sd~~~~~v~~~g~lp~L~~Ll~ 461 (1088)
....-++..|..++.++.....---.+-++.++.++..... +.+..+++||..++ .++...+.+++.|+++.|.+.+.
T Consensus 72 ~~~~LavsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~ 150 (543)
T PF05536_consen 72 EYLSLAVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIP 150 (543)
T ss_pred HHHHHHHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHH
Confidence 45566778888888866665222333446777888877766 77888999999999 78888889999999999999988
Q ss_pred CCChhHHHHHHHHHhhhhcccc
Q 001385 462 HKNPEVQRFALLAVGNLAFCLE 483 (1088)
Q Consensus 462 ~~~~~vq~~Al~algnla~~~~ 483 (1088)
+ .+..+..|+..+.++.....
T Consensus 151 ~-~~~~~E~Al~lL~~Lls~~~ 171 (543)
T PF05536_consen 151 N-QSFQMEIALNLLLNLLSRLG 171 (543)
T ss_pred h-CcchHHHHHHHHHHHHHhcc
Confidence 8 44455668888887755433
No 220
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=49.53 E-value=13 Score=24.84 Aligned_cols=25 Identities=16% Similarity=0.193 Sum_probs=21.6
Q ss_pred ccccceeeccCChhhhhhHHHHhcc
Q 001385 370 VRQLISMISSDNRHVVEQACSALSS 394 (1088)
Q Consensus 370 Lp~L~~L~Ls~N~~v~~~a~~~L~~ 394 (1088)
.++|+.|++++++.+.+.++..++.
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~~ 25 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALAK 25 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHhc
Confidence 4789999999999999999887764
No 221
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=49.21 E-value=39 Score=38.86 Aligned_cols=55 Identities=25% Similarity=0.327 Sum_probs=34.3
Q ss_pred CCCCceEEEec--C--CCchHH----------------H----HHHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHh
Q 001385 536 PKQGLRILSMD--G--GGMKGL----------------A----TVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALA 591 (1088)
Q Consensus 536 ~~~~~riLsLd--G--GG~RG~----------------~----~~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~ 591 (1088)
..++++|+++| | +|.-+- + .+..+.++.+.++.. .+=.++|.|+||++|..++
T Consensus 69 ~~~~~~vi~~D~~G~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~l~G~S~Gg~ia~~~a 145 (351)
T TIGR01392 69 DTDRYFVVCSNVLGGCYGSTGPSSINPGGRPYGSDFPLITIRDDVKAQKLLLDHLGIE---QIAAVVGGSMGGMQALEWA 145 (351)
T ss_pred CCCceEEEEecCCCCCCCCCCCCCCCCCCCcCCCCCCCCcHHHHHHHHHHHHHHcCCC---CceEEEEECHHHHHHHHHH
Confidence 34678999998 4 443221 1 233444555555532 1126999999999999997
Q ss_pred cC
Q 001385 592 VK 593 (1088)
Q Consensus 592 ~~ 593 (1088)
..
T Consensus 146 ~~ 147 (351)
T TIGR01392 146 ID 147 (351)
T ss_pred HH
Confidence 64
No 222
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=48.60 E-value=5 Score=46.49 Aligned_cols=78 Identities=29% Similarity=0.328 Sum_probs=44.4
Q ss_pred CCcEEEccCCcCcccchhccCCCCCCEEEeccCCCCCCcccccCCccccEEEecCCCCCCCccccCCCCCCeEEeeCCCC
Q 001385 221 NLKVLIVDNNMLVCVPVELRECVGLVELSLEHNRLVRPLLDFRAMAELKILRLFGNPLEFLPEILPLLKLRHLSLANIRI 300 (1088)
Q Consensus 221 ~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~~~~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~L~~N~l 300 (1088)
.-+.+.++++.+...|..+..|+.|+.+.+..|+++..++.++++.++..+.+. +.+..+..+.-+-.+.+..|..
T Consensus 105 ~~t~~s~s~~~~~~~~~~vt~l~~~~~~~~~~~k~s~~~~li~k~~~~~i~r~~----s~~d~l~~~~pf~e~s~~~~~~ 180 (763)
T KOG4231|consen 105 TVTSLSLSGCGLLVMPVEVTELPLLEKLCLEHNKLSVLPPLIGKLKNLKILRVD----SVPDELRQCVPFVELSLEHNKL 180 (763)
T ss_pred eeeecccccceeccChHHHHhhhhhhHHHHHHhhhccchhhhhhhhhHHHhccC----CccccccccCCchhhhhhccCc
Confidence 344556666666666666677777777777777776666555555555544433 1222344444444555555555
Q ss_pred CC
Q 001385 301 VA 302 (1088)
Q Consensus 301 ~~ 302 (1088)
..
T Consensus 181 ~~ 182 (763)
T KOG4231|consen 181 VR 182 (763)
T ss_pred cC
Confidence 44
No 223
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=48.55 E-value=30 Score=40.34 Aligned_cols=54 Identities=24% Similarity=0.382 Sum_probs=34.4
Q ss_pred CCCceEEEec--C--CCchH--------------------H-HHHHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHh
Q 001385 537 KQGLRILSMD--G--GGMKG--------------------L-ATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALA 591 (1088)
Q Consensus 537 ~~~~riLsLd--G--GG~RG--------------------~-~~~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~ 591 (1088)
.+++||+++| | ||.-| + -.+..+.++.+.++.. .+-.++|.|+||.+|..++
T Consensus 89 ~~~~~vi~~Dl~G~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~lvG~S~Gg~ia~~~a 165 (379)
T PRK00175 89 TDRYFVICSNVLGGCKGSTGPSSINPDTGKPYGSDFPVITIRDWVRAQARLLDALGIT---RLAAVVGGSMGGMQALEWA 165 (379)
T ss_pred ccceEEEeccCCCCCCCCCCCCCCCCCCCCcccCCCCcCCHHHHHHHHHHHHHHhCCC---CceEEEEECHHHHHHHHHH
Confidence 4578999999 7 33211 1 1233444555555532 2227999999999999998
Q ss_pred cC
Q 001385 592 VK 593 (1088)
Q Consensus 592 ~~ 593 (1088)
..
T Consensus 166 ~~ 167 (379)
T PRK00175 166 ID 167 (379)
T ss_pred Hh
Confidence 64
No 224
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=48.07 E-value=73 Score=36.26 Aligned_cols=75 Identities=25% Similarity=0.267 Sum_probs=59.0
Q ss_pred HhhhhhHHHHHHHhcCCChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcCCchhHHHHHHHHHHhhcchHHH
Q 001385 447 MLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGENESL 526 (1088)
Q Consensus 447 v~~~g~lp~L~~Ll~~~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~ 526 (1088)
+-+.-+.+.|+.++.+....++..|..+++.+.... ..+.+.+...+...+..++..+..++..++..+..
T Consensus 176 ~~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~~~~~ 246 (335)
T COG1413 176 LGDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLEVRKAALLALGEIGDEEAV 246 (335)
T ss_pred cCChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHHHHHHHHHHhcccCcchhH
Confidence 334456788888888888899999999999775554 35668889999999999999999999888877654
Q ss_pred HHhh
Q 001385 527 RRAI 530 (1088)
Q Consensus 527 r~~~ 530 (1088)
...+
T Consensus 247 ~~l~ 250 (335)
T COG1413 247 DALA 250 (335)
T ss_pred HHHH
Confidence 4443
No 225
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=46.36 E-value=32 Score=41.02 Aligned_cols=82 Identities=16% Similarity=0.141 Sum_probs=60.1
Q ss_pred cCChHHHHHHHHHHHhhhccChHHHHHHhhhhhHHHHHHHhcCC-----ChhHHHHHHHHHhhhh-ccccccceeecccC
Q 001385 420 SFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHK-----NPEVQRFALLAVGNLA-FCLENRRILVTSES 493 (1088)
Q Consensus 420 ~~~~~~~~~~l~~L~~L~~~sd~~~~~v~~~g~lp~L~~Ll~~~-----~~~vq~~Al~algnla-~~~~~~~~~v~~~~ 493 (1088)
..+......++.||.|+.|.+....+...+.|..+.+.+.+... +..++--.++.+.=++ ...+.+.+++.+.+
T Consensus 43 ~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~ 122 (446)
T PF10165_consen 43 SPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHH 122 (446)
T ss_pred CCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhh
Confidence 44567778899999999999988888889999999999988876 5666655666655443 45566666665556
Q ss_pred hhhhhHhh
Q 001385 494 LRDLLMRL 501 (1088)
Q Consensus 494 ~~~~L~~l 501 (1088)
+.+.+...
T Consensus 123 ~~~~l~~~ 130 (446)
T PF10165_consen 123 GVELLTEA 130 (446)
T ss_pred hHHHHHHH
Confidence 66665543
No 226
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=45.98 E-value=18 Score=41.57 Aligned_cols=70 Identities=21% Similarity=0.233 Sum_probs=60.9
Q ss_pred hhHHHHHHHhcC-CChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcCCchhHHHHHHHHHHhh
Q 001385 451 DVLKSLKLLCAH-KNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAIL 520 (1088)
Q Consensus 451 g~lp~L~~Ll~~-~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l 520 (1088)
.++..|.+++.. .++.+-..|+.-+|.++.+-.+...++...|+.+.+++++.+++++|+.+|..|+..|
T Consensus 366 ellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~l 436 (442)
T KOG2759|consen 366 ELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKL 436 (442)
T ss_pred HHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 468888888885 4577767789999999999999999999999999999999999999999999888654
No 227
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=44.57 E-value=1.4e+02 Score=30.69 Aligned_cols=91 Identities=18% Similarity=0.222 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHhhhccChHHHHHHhhhhhHHHHHHHhcCCChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhc
Q 001385 424 EEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTV 503 (1088)
Q Consensus 424 ~~~~~~l~~L~~L~~~sd~~~~~v~~~g~lp~L~~Ll~~~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~ 503 (1088)
....+++-+++.|+..-.... ...+|.+...+.++++.|++.|+.++.++....-.+. ...++..++.++.
T Consensus 3 ~vR~n~i~~l~DL~~r~~~~v-----e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~----k~~l~~~~l~~l~ 73 (178)
T PF12717_consen 3 SVRNNAIIALGDLCIRYPNLV-----EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKV----KGQLFSRILKLLV 73 (178)
T ss_pred HHHHHHHHHHHHHHHhCcHHH-----HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceee----hhhhhHHHHHHHc
Confidence 445567777777775333222 2357889999999999999999999999875432222 2233366677788
Q ss_pred CCchhHHHHHHHHHHhhcch
Q 001385 504 GPEPRVNKAAARALAILGEN 523 (1088)
Q Consensus 504 ~~~~~v~~~a~~aL~~l~~~ 523 (1088)
.++++|+..|..++..+...
T Consensus 74 D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 74 DENPEIRSLARSFFSELLKK 93 (178)
T ss_pred CCCHHHHHHHHHHHHHHHHh
Confidence 99999999999888776544
No 228
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.46 E-value=1e+02 Score=35.79 Aligned_cols=137 Identities=18% Similarity=0.178 Sum_probs=87.8
Q ss_pred HHHhccccCCchhhHHHHHCCCcHHHHHHhccCChHHHHHHHHHHHhhhc-----cChH----HHHHHhhhhhHHHHHHH
Q 001385 389 CSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAF-----ASDT----VAQKMLTKDVLKSLKLL 459 (1088)
Q Consensus 389 ~~~L~~L~~~~~~~~~l~~~~~~~~Ll~lL~~~~~~~~~~~l~~L~~L~~-----~sd~----~~~~v~~~g~lp~L~~L 459 (1088)
++-+.-++..+.....+++.++++.++.+|.+.+.++.......|.+|.- .++. .+..+++.++++-|+.-
T Consensus 105 IQ~mhvlAt~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqn 184 (536)
T KOG2734|consen 105 IQEMHVLATMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQN 184 (536)
T ss_pred HHHHHhhhcChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHH
Confidence 33344444444444788999999999999999998888878888887752 1111 14456667777777765
Q ss_pred hcCCChhHH------HHHHHHHhhhhccccccceeecccChhhhhHh-hhcC-CchhHHHHHHHHHHhhcchHH
Q 001385 460 CAHKNPEVQ------RFALLAVGNLAFCLENRRILVTSESLRDLLMR-LTVG-PEPRVNKAAARALAILGENES 525 (1088)
Q Consensus 460 l~~~~~~vq------~~Al~algnla~~~~~~~~~v~~~~~~~~L~~-ll~~-~~~~v~~~a~~aL~~l~~~~~ 525 (1088)
+..-+.++. ..++..+-|++.-...-.+.+.+.+++.+|+. +... ........|...++++..+..
T Consensus 185 veRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~ 258 (536)
T KOG2734|consen 185 VERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSD 258 (536)
T ss_pred HHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCc
Confidence 553333332 23455567776666555555556688888777 3332 344456777788888877654
No 229
>PRK13604 luxD acyl transferase; Provisional
Probab=43.99 E-value=43 Score=37.65 Aligned_cols=51 Identities=12% Similarity=0.156 Sum_probs=32.4
Q ss_pred CCCceEEEec--CC-C-chH----------HH-HHHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhc
Q 001385 537 KQGLRILSMD--GG-G-MKG----------LA-TVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAV 592 (1088)
Q Consensus 537 ~~~~riLsLd--GG-G-~RG----------~~-~~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~ 592 (1088)
..|+.+|.+| || | .-| .. ...+++.+.+....+ =.+.|.|+||.+|.+.|.
T Consensus 62 ~~G~~vLrfD~rg~~GeS~G~~~~~t~s~g~~Dl~aaid~lk~~~~~~-----I~LiG~SmGgava~~~A~ 127 (307)
T PRK13604 62 SNGFHVIRYDSLHHVGLSSGTIDEFTMSIGKNSLLTVVDWLNTRGINN-----LGLIAASLSARIAYEVIN 127 (307)
T ss_pred HCCCEEEEecCCCCCCCCCCccccCcccccHHHHHHHHHHHHhcCCCc-----eEEEEECHHHHHHHHHhc
Confidence 4689999999 43 4 233 22 334556665432222 268999999999877653
No 230
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=43.57 E-value=41 Score=39.78 Aligned_cols=136 Identities=13% Similarity=0.097 Sum_probs=94.8
Q ss_pred hHHHHhccccCCchhh-HHHHHCCCcHHHHHHhccCChHHHHHHHHHHHhhhccChHHHHHHhhhhhHHHHHHHhcCCCh
Q 001385 387 QACSALSSLAGDVSVA-MLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHKNP 465 (1088)
Q Consensus 387 ~a~~~L~~L~~~~~~~-~~l~~~~~~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd~~~~~v~~~g~lp~L~~Ll~~~~~ 465 (1088)
.++..|..+......+ .-+.+..+++.|+..|+.+..-........+.++...=.+....+++.|++--|+.++.+++.
T Consensus 408 a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDd 487 (743)
T COG5369 408 AIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDD 487 (743)
T ss_pred HHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchh
Confidence 4455667777665555 667788899999998877543322334444455543223344567889999999999999999
Q ss_pred hHHHHHHHHHhhhhccccccc--eeecccChhhhhHhhhcCCchhHHHHHHHHHHhhcch
Q 001385 466 EVQRFALLAVGNLAFCLENRR--ILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGEN 523 (1088)
Q Consensus 466 ~vq~~Al~algnla~~~~~~~--~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 523 (1088)
+.|..+.|.+.++.++-++-. +.+-. -....++.+...+.-.|++.....+.+...+
T Consensus 488 aLqans~wvlrHlmyncq~~ekf~~Lak-ig~~kvl~~~NDpc~~vq~q~lQilrNftc~ 546 (743)
T COG5369 488 ALQANSEWVLRHLMYNCQKNEKFKFLAK-IGVEKVLSYTNDPCFKVQHQVLQILRNFTCD 546 (743)
T ss_pred hhhhcchhhhhhhhhcCcchhhhhhHHh-cCHHHHHHHhcCcccccHHHHHHHHHhcccc
Confidence 999999999999988766543 33323 3345667777777778888888777777664
No 231
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=43.52 E-value=10 Score=45.03 Aligned_cols=61 Identities=21% Similarity=0.188 Sum_probs=30.0
Q ss_pred ccccEEEecCCCCCCCcccc----CCCCCCeEEeeCC--CCCCCccccchhhhhcCcCCccccccccchhh
Q 001385 266 AELKILRLFGNPLEFLPEIL----PLLKLRHLSLANI--RIVADENLRSVNVQIEMENNSYFGASRHKLSA 330 (1088)
Q Consensus 266 ~~L~~L~Ls~N~l~~l~~l~----~l~~L~~L~L~~N--~l~~~~~l~~l~~~~~l~~l~~l~l~~n~l~~ 330 (1088)
+.+..++|++|+|..+..+. ..++|.+|+|++| .+.....+.++. ...|+.|-+.+|.++.
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k----~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLK----GLPLEELVLEGNPLCT 284 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhc----CCCHHHeeecCCcccc
Confidence 44445555555554333222 3356666666666 444433333321 3345555666666544
No 232
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=41.71 E-value=63 Score=29.65 Aligned_cols=85 Identities=11% Similarity=0.093 Sum_probs=55.4
Q ss_pred hHHHHhccccCCchhhHHHHHCCCcHHHHHHhccCChHHHHHHHHHHHhhhccChHHHHHHhhhhhHHHHHHHhcCCChh
Q 001385 387 QACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHKNPE 466 (1088)
Q Consensus 387 ~a~~~L~~L~~~~~~~~~l~~~~~~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd~~~~~v~~~g~lp~L~~Ll~~~~~~ 466 (1088)
.++.+|+..+........-+-..++++++.++.+.+..+...+..+|.+++......... .=..+...|-++....+++
T Consensus 5 ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~-~f~~IF~~L~kl~~D~d~~ 83 (97)
T PF12755_consen 5 GGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILP-YFNEIFDALCKLSADPDEN 83 (97)
T ss_pred HHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCchh
Confidence 344445544433333333444456788899998888888888999999988644333222 2235677788888899999
Q ss_pred HHHHHH
Q 001385 467 VQRFAL 472 (1088)
Q Consensus 467 vq~~Al 472 (1088)
||..|.
T Consensus 84 Vr~~a~ 89 (97)
T PF12755_consen 84 VRSAAE 89 (97)
T ss_pred HHHHHH
Confidence 987553
No 233
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=40.24 E-value=35 Score=35.46 Aligned_cols=18 Identities=39% Similarity=0.510 Sum_probs=16.2
Q ss_pred ceEEecchHHHHHHHHhc
Q 001385 575 DLVCGTSTGGMLAIALAV 592 (1088)
Q Consensus 575 Dli~GTStG~iiA~~l~~ 592 (1088)
.+++|+|.||..|..++.
T Consensus 61 ~~liGSSlGG~~A~~La~ 78 (187)
T PF05728_consen 61 VVLIGSSLGGFYATYLAE 78 (187)
T ss_pred eEEEEEChHHHHHHHHHH
Confidence 589999999999999863
No 234
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=39.73 E-value=1.8e+02 Score=34.36 Aligned_cols=121 Identities=15% Similarity=0.133 Sum_probs=83.9
Q ss_pred ChhhhhhHHHHhccccCCchhhHHHHHCCCcHHHHHHhccCC--hHHHHHHHHHHHhhhccChHHHHHHhhhhhHHHHHH
Q 001385 381 NRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFA--PEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKL 458 (1088)
Q Consensus 381 N~~v~~~a~~~L~~L~~~~~~~~~l~~~~~~~~Ll~lL~~~~--~~~~~~~l~~L~~L~~~sd~~~~~v~~~g~lp~L~~ 458 (1088)
+......++..|..+-..........+.++++.|+.+|+... ...+-..+-|+.-|.|..+ ....+.+.+++|.|..
T Consensus 157 ~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~-~~~~~~~~~~i~~l~~ 235 (429)
T cd00256 157 NNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPH-AAEVLKRLSLIQDLSD 235 (429)
T ss_pred CcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHH-HHHhhccccHHHHHHH
Confidence 345566677788888876666667778889999999987644 2445567888888887665 4445667899999999
Q ss_pred HhcC-CChhHHHHHHHHHhhhhccccc------cceeecccChhhhhHhhh
Q 001385 459 LCAH-KNPEVQRFALLAVGNLAFCLEN------RRILVTSESLRDLLMRLT 502 (1088)
Q Consensus 459 Ll~~-~~~~vq~~Al~algnla~~~~~------~~~~v~~~~~~~~L~~ll 502 (1088)
+++. ....|-+-++.++.|+...... ....++.+++.+.+-.+.
T Consensus 236 i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~ 286 (429)
T cd00256 236 ILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLE 286 (429)
T ss_pred HHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHh
Confidence 9885 4556667788889999765421 122344667766554443
No 235
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=39.18 E-value=1e+02 Score=32.75 Aligned_cols=108 Identities=18% Similarity=0.166 Sum_probs=65.1
Q ss_pred CCcHHHHHHhccCChHHHHHHHHHHHhhhccChHHHHHHhhhhhHHHHHHHhcCCChhHHHHHHHHHhhhhcccccccee
Q 001385 409 DIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRIL 488 (1088)
Q Consensus 409 ~~~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd~~~~~v~~~g~lp~L~~Ll~~~~~~vq~~Al~algnla~~~~~~~~~ 488 (1088)
.++..+...+.+....+...++.++..++..-....... -..++|.|.+.+.+.+..++..|..++-.+......-
T Consensus 53 ~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~-~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~--- 128 (228)
T PF12348_consen 53 QLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPY-ADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYS--- 128 (228)
T ss_dssp ---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHH-HHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H----
T ss_pred HhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHH-HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcH---
Confidence 555666666666556666778898888875433333222 3457899999999999889998888888775533311
Q ss_pred ecccCh-hhhhHhhhcCCchhHHHHHHHHHHhhcch
Q 001385 489 VTSESL-RDLLMRLTVGPEPRVNKAAARALAILGEN 523 (1088)
Q Consensus 489 v~~~~~-~~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 523 (1088)
..+ .+.+.....++.+.++..++..+..+-..
T Consensus 129 ---~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~ 161 (228)
T PF12348_consen 129 ---PKILLEILSQGLKSKNPQVREECAEWLAIILEK 161 (228)
T ss_dssp ----HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT
T ss_pred ---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 122 56677788899999999988877665433
No 236
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=38.68 E-value=1.8e+02 Score=33.07 Aligned_cols=98 Identities=24% Similarity=0.305 Sum_probs=69.4
Q ss_pred cHHHHHHhccCChHHHHHHHHHHHhhhccChHHHHHHhhhhhHHHHHHHhcCCChhHHHHHHHHHhhhhccccccceeec
Q 001385 411 MQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVT 490 (1088)
Q Consensus 411 ~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd~~~~~v~~~g~lp~L~~Ll~~~~~~vq~~Al~algnla~~~~~~~~~v~ 490 (1088)
.+.++..+.+.+......+...+..+. ...++|.|..++.+.+..++..|..++|++ .
T Consensus 45 ~~~~~~~l~~~~~~vr~~aa~~l~~~~-----------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~-----------~ 102 (335)
T COG1413 45 ADELLKLLEDEDLLVRLSAAVALGELG-----------SEEAVPLLRELLSDEDPRVRDAAADALGEL-----------G 102 (335)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhhhc-----------hHHHHHHHHHHhcCCCHHHHHHHHHHHHcc-----------C
Confidence 345555666554554454554433322 345789999999999999999999988864 2
Q ss_pred ccChhhhhHhhhc-CCchhHHHHHHHHHHhhcchHHHHHhh
Q 001385 491 SESLRDLLMRLTV-GPEPRVNKAAARALAILGENESLRRAI 530 (1088)
Q Consensus 491 ~~~~~~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~~r~~~ 530 (1088)
.....+.|+.++. +.+..++..+.+++..++....+...+
T Consensus 103 ~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~a~~~l~ 143 (335)
T COG1413 103 DPEAVPPLVELLENDENEGVRAAAARALGKLGDERALDPLL 143 (335)
T ss_pred ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchhhhHHHH
Confidence 4456678888877 588899999999999988776444443
No 237
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=38.62 E-value=2.7e+02 Score=29.07 Aligned_cols=123 Identities=18% Similarity=0.212 Sum_probs=74.2
Q ss_pred hhhhhHHHHhccccCCchhhHHHHHCCC----------------cHHHHHHhcc-----CC-hHHHHHHHHHHHhhhccC
Q 001385 383 HVVEQACSALSSLAGDVSVAMLLMKCDI----------------MQPIIAVLKS-----FA-PEEVKSVLQVVGQLAFAS 440 (1088)
Q Consensus 383 ~v~~~a~~~L~~L~~~~~~~~~l~~~~~----------------~~~Ll~lL~~-----~~-~~~~~~~l~~L~~L~~~s 440 (1088)
...+.++-.|+|+....+-+..++..+. +..|+..+.. .+ .+........+.|+. ..
T Consensus 10 ~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS-~~ 88 (192)
T PF04063_consen 10 PLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLS-QL 88 (192)
T ss_pred chHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhc-CC
Confidence 3556667778888876665544444332 2333333322 11 122233345555555 33
Q ss_pred hHHHHHHhhh--hh--HHHHHHHhcCCChhHHHHHHHHHhhhhccccccceeecc--cChhhhhHhhhcCCc
Q 001385 441 DTVAQKMLTK--DV--LKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTS--ESLRDLLMRLTVGPE 506 (1088)
Q Consensus 441 d~~~~~v~~~--g~--lp~L~~Ll~~~~~~vq~~Al~algnla~~~~~~~~~v~~--~~~~~~L~~ll~~~~ 506 (1088)
....+.+++. +. +.+|..+..+.+..-+..+..++.|.+|..+....++.. ..+++.|+.-+..++
T Consensus 89 ~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLaGpE 160 (192)
T PF04063_consen 89 PEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLAGPE 160 (192)
T ss_pred HHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhccCCC
Confidence 3334444443 33 788888888887766677789999999999998887764 378888777666554
No 238
>PRK11071 esterase YqiA; Provisional
Probab=38.43 E-value=81 Score=32.73 Aligned_cols=50 Identities=16% Similarity=0.141 Sum_probs=32.8
Q ss_pred CceEEEecCCCchHHHHHHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhcC
Q 001385 539 GLRILSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVK 593 (1088)
Q Consensus 539 ~~riLsLdGGG~RG~~~~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~~ 593 (1088)
++++++.|=-|- |--.+..+.++.+..+.+ . =.++|.|.||.+|+.++..
T Consensus 32 ~~~v~~~dl~g~-~~~~~~~l~~l~~~~~~~---~-~~lvG~S~Gg~~a~~~a~~ 81 (190)
T PRK11071 32 DIEMIVPQLPPY-PADAAELLESLVLEHGGD---P-LGLVGSSLGGYYATWLSQC 81 (190)
T ss_pred CCeEEeCCCCCC-HHHHHHHHHHHHHHcCCC---C-eEEEEECHHHHHHHHHHHH
Confidence 466777775443 334455666666554432 1 2799999999999999853
No 239
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=37.90 E-value=24 Score=24.12 Aligned_cols=13 Identities=15% Similarity=0.263 Sum_probs=6.3
Q ss_pred CccEEEccCCCCC
Q 001385 175 TVTAVSLCGLGLS 187 (1088)
Q Consensus 175 ~L~~L~Ls~n~l~ 187 (1088)
+|++|||++|.|.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4445555555443
No 240
>cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=37.48 E-value=66 Score=35.63 Aligned_cols=53 Identities=17% Similarity=0.197 Sum_probs=32.3
Q ss_pred CCceEEEecCCC-chH-------------HHHHHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhc
Q 001385 538 QGLRILSMDGGG-MKG-------------LATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAV 592 (1088)
Q Consensus 538 ~~~riLsLdGGG-~RG-------------~~~~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~ 592 (1088)
.+++|+++|=+| ... -....+++.|.+..+..+.+ + .++|.|.||.+|..+|.
T Consensus 65 ~~~nVi~vD~~~~~~~~y~~a~~~~~~v~~~la~~l~~L~~~~g~~~~~-i-~lIGhSlGa~vAg~~a~ 131 (275)
T cd00707 65 GDYNVIVVDWGRGANPNYPQAVNNTRVVGAELAKFLDFLVDNTGLSLEN-V-HLIGHSLGAHVAGFAGK 131 (275)
T ss_pred CCCEEEEEECccccccChHHHHHhHHHHHHHHHHHHHHHHHhcCCChHH-E-EEEEecHHHHHHHHHHH
Confidence 358899998322 111 11234566665554433222 2 58999999999999875
No 241
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=37.18 E-value=53 Score=38.53 Aligned_cols=202 Identities=15% Similarity=-0.021 Sum_probs=94.1
Q ss_pred CccEEEeeCCCCCCCCccccccC---ccccEEeCcCCCCCCCC--ccccccCCCCccEEEccCCCCC-----Ccccc---
Q 001385 126 PLRAVVLTKGVGSGHLSDGIGVL---TRLMRSDLSTSGPGNNM--GSGFCDHWKTVTAVSLCGLGLS-----ALPVD--- 192 (1088)
Q Consensus 126 ~L~~L~Ls~n~i~~~~p~~l~~l---~~L~~L~Ls~N~l~~~~--~~~~~~~l~~L~~L~Ls~n~l~-----~lp~~--- 192 (1088)
.+.+++|+.|.....+|..+..+ ..|+.++.+...+..+. -+-.++.-++|...+++.|..+ +++..
T Consensus 215 ~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~ 294 (553)
T KOG4242|consen 215 WLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKD 294 (553)
T ss_pred cccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCCCccccccccccccc
Confidence 46677777777666666543322 34666666655421111 2223344467777777777644 34332
Q ss_pred -ccCCCCCcEEEccCCCCC--CCchhhcCC-----CCCcEEEccCCcCc--ccchhccCCCCCCEEEeccCCCCCCcc--
Q 001385 193 -LTRLPVLEKLYLDNNKLS--TLPPELGAM-----KNLKVLIVDNNMLV--CVPVELRECVGLVELSLEHNRLVRPLL-- 260 (1088)
Q Consensus 193 -l~~l~~L~~L~L~~N~l~--~lp~~l~~l-----~~L~~L~Ls~N~l~--~lp~~l~~l~~L~~L~Ls~N~l~~~~~-- 260 (1088)
+..-.++ +|++..+... .++..+-.+ +.=-.+++..|... +.-..-.+=..+++|.+..|.+.+...
T Consensus 295 ~fS~~~sg-hln~~~~~~psE~lks~LLgla~ne~t~g~rldl~~cp~~~a~vleaci~g~R~q~l~~rdnnldgeg~~v 373 (553)
T KOG4242|consen 295 TFSPDPSG-HLNSRPRYTPSEKLKSMLLGLAENEATLGARLDLRRCPLERAEVLEACIFGQRVQVLLQRDNNLDGEGGAV 373 (553)
T ss_pred ccCcCccc-ccccccccCchhhhhhhhcccccccccccccCChhhccccccchhhccccceeeeEeeccccccccccccc
Confidence 2223445 6666555443 222111100 01112344444333 111111222357788888887766543
Q ss_pred -cccCCccccEEEecCCCCC---CCcc----cc----CCCCCCeEEeeCCCCCCC-ccccchhhhhcCcCCccccccccc
Q 001385 261 -DFRAMAELKILRLFGNPLE---FLPE----IL----PLLKLRHLSLANIRIVAD-ENLRSVNVQIEMENNSYFGASRHK 327 (1088)
Q Consensus 261 -~l~~l~~L~~L~Ls~N~l~---~l~~----l~----~l~~L~~L~L~~N~l~~~-~~l~~l~~~~~l~~l~~l~l~~n~ 327 (1088)
.+..-++++.+++..-.-. ..+. +. ...-+..+.++.|.+... ....+ ....-+.+..+++++|.
T Consensus 374 gk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in--~l~stqtl~kldisgn~ 451 (553)
T KOG4242|consen 374 GKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAIN--KLLSTQTLAKLDISGNG 451 (553)
T ss_pred cceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHHH--hhccCcccccccccCCC
Confidence 2344456666666543221 1110 00 112355666666666542 11111 01123456667777776
Q ss_pred hhh
Q 001385 328 LSA 330 (1088)
Q Consensus 328 l~~ 330 (1088)
-..
T Consensus 452 mgd 454 (553)
T KOG4242|consen 452 MGD 454 (553)
T ss_pred ccc
Confidence 443
No 242
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=36.84 E-value=1e+02 Score=36.72 Aligned_cols=90 Identities=13% Similarity=0.076 Sum_probs=68.5
Q ss_pred hccccCCchhh-HHHHHCCCcHHHHHHhccCChHHHHHHHHHHHhhhccChHHHH-HHhhhhhHHHHHHHhcCCChhHHH
Q 001385 392 LSSLAGDVSVA-MLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQ-KMLTKDVLKSLKLLCAHKNPEVQR 469 (1088)
Q Consensus 392 L~~L~~~~~~~-~~l~~~~~~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd~~~~-~v~~~g~lp~L~~Ll~~~~~~vq~ 469 (1088)
+.|+-..-+.+ .-.++-+++..++.++.+.+...+.+....+.++.++++...+ ..+..-.+..+.++...++..||.
T Consensus 455 icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~ 534 (743)
T COG5369 455 ICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQH 534 (743)
T ss_pred hhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHH
Confidence 33344444555 6677888999999988877777778888999999987766533 334444488889999999999999
Q ss_pred HHHHHHhhhhcc
Q 001385 470 FALLAVGNLAFC 481 (1088)
Q Consensus 470 ~Al~algnla~~ 481 (1088)
..+..+.|+++.
T Consensus 535 q~lQilrNftc~ 546 (743)
T COG5369 535 QVLQILRNFTCD 546 (743)
T ss_pred HHHHHHHhcccc
Confidence 999999999763
No 243
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=36.65 E-value=55 Score=36.27 Aligned_cols=95 Identities=16% Similarity=0.191 Sum_probs=70.6
Q ss_pred HHHHHHhhhccChHHHHHHhhhhhHHHHHHHhcCCChhHHHHHHHHHhhhhcccc----ccceeecccChhhhhHhhhcC
Q 001385 429 VLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLE----NRRILVTSESLRDLLMRLTVG 504 (1088)
Q Consensus 429 ~l~~L~~L~~~sd~~~~~v~~~g~lp~L~~Ll~~~~~~vq~~Al~algnla~~~~----~~~~~v~~~~~~~~L~~ll~~ 504 (1088)
+..||..|...-+. .-+-...||-|+.=+.+.+..|+..|+..+|.+.-..| .-.+.|.++++.+.++.....
T Consensus 63 cVscLERLfkakeg---ahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgg 139 (524)
T KOG4413|consen 63 CVSCLERLFKAKEG---AHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGG 139 (524)
T ss_pred HHHHHHHHHhhccc---hhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcC
Confidence 45555555532211 12334568888888999999999999999998865554 234466699999999999999
Q ss_pred CchhHHHHHHHHHHhhcchHHH
Q 001385 505 PEPRVNKAAARALAILGENESL 526 (1088)
Q Consensus 505 ~~~~v~~~a~~aL~~l~~~~~~ 526 (1088)
.+.+|-+.|...+.-++.-+..
T Consensus 140 eddeVAkAAiesikrialfpaa 161 (524)
T KOG4413|consen 140 EDDEVAKAAIESIKRIALFPAA 161 (524)
T ss_pred CcHHHHHHHHHHHHHHHhcHHH
Confidence 9999999999999888766543
No 244
>PLN02965 Probable pheophorbidase
Probab=35.45 E-value=66 Score=34.83 Aligned_cols=53 Identities=19% Similarity=0.265 Sum_probs=31.0
Q ss_pred CCceEEEec--CCC----ch-HHHH----HHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhcC
Q 001385 538 QGLRILSMD--GGG----MK-GLAT----VQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVK 593 (1088)
Q Consensus 538 ~~~riLsLd--GGG----~R-G~~~----~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~~ 593 (1088)
.+++|+++| |-| .. ..+. +.-+.++.+.++. .+.+ +++|.|+||.+|..++..
T Consensus 29 ~~~~via~Dl~G~G~S~~~~~~~~~~~~~a~dl~~~l~~l~~--~~~~-~lvGhSmGG~ia~~~a~~ 92 (255)
T PLN02965 29 AGFKSTCVDLTGAGISLTDSNTVSSSDQYNRPLFALLSDLPP--DHKV-ILVGHSIGGGSVTEALCK 92 (255)
T ss_pred CCceEEEecCCcCCCCCCCccccCCHHHHHHHHHHHHHhcCC--CCCE-EEEecCcchHHHHHHHHh
Confidence 468899988 322 11 1121 2224444444432 1123 899999999999999863
No 245
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=35.11 E-value=2.2e+02 Score=31.86 Aligned_cols=103 Identities=20% Similarity=0.201 Sum_probs=71.8
Q ss_pred HHhccCChHHHHHHHHHHHhhhccChHHHHHHhhhhhHHHHHHHhcCCChhHHHHHHHHHhhhhc--ccccccee-----
Q 001385 416 AVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAF--CLENRRIL----- 488 (1088)
Q Consensus 416 ~lL~~~~~~~~~~~l~~L~~L~~~sd~~~~~v~~~g~lp~L~~Ll~~~~~~vq~~Al~algnla~--~~~~~~~~----- 488 (1088)
..+++.++..+..++.||+-.+.-+...+.. .++.+...+...+..++..|+.++..+.. |.+.-...
T Consensus 34 P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~ 108 (298)
T PF12719_consen 34 PAVQSSDPAVRELALKCLGLCCLLDKELAKE-----HLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDE 108 (298)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCc
Confidence 3456777888888999999888766544332 24445555555688999999999987753 22221111
Q ss_pred -ecccChhhhhHhhhcCCchhHHHHHHHHHHhhcch
Q 001385 489 -VTSESLRDLLMRLTVGPEPRVNKAAARALAILGEN 523 (1088)
Q Consensus 489 -v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 523 (1088)
.....+.+.+...+.+.+++++..|+..++.+--.
T Consensus 109 ~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~ 144 (298)
T PF12719_consen 109 SVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLS 144 (298)
T ss_pred cchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 22346778888888888999999999998887544
No 246
>PF05536 Neurochondrin: Neurochondrin
Probab=35.06 E-value=2.3e+02 Score=34.87 Aligned_cols=117 Identities=19% Similarity=0.131 Sum_probs=80.2
Q ss_pred HHHHHHhccCChHHHHHHHHHHHhhhccChHHH---HHHhhhhhHHHHHHHhcCC-------ChhHHHHHHHHHhhhhcc
Q 001385 412 QPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVA---QKMLTKDVLKSLKLLCAHK-------NPEVQRFALLAVGNLAFC 481 (1088)
Q Consensus 412 ~~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd~~~---~~v~~~g~lp~L~~Ll~~~-------~~~vq~~Al~algnla~~ 481 (1088)
+..+.+|+..+.+.+-.++-.+.+++..++... +.+++.=-.+=|.+|++.+ ....+..|+..+..|+..
T Consensus 8 ~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~~ 87 (543)
T PF05536_consen 8 EKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCRD 87 (543)
T ss_pred HHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcCC
Confidence 445677887776777778999999997766443 3577754467777888862 223444555566655443
Q ss_pred cccc--ceeecccChhhhhHhhhcCCch-hHHHHHHHHHHhhcchHHHHHhhh
Q 001385 482 LENR--RILVTSESLRDLLMRLTVGPEP-RVNKAAARALAILGENESLRRAIR 531 (1088)
Q Consensus 482 ~~~~--~~~v~~~~~~~~L~~ll~~~~~-~v~~~a~~aL~~l~~~~~~r~~~~ 531 (1088)
.+.. .+++ +-+|.|+.++..... .+..++..+|..++..+.-++.+-
T Consensus 88 ~~~a~~~~~~---~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl 137 (543)
T PF05536_consen 88 PELASSPQMV---SRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALL 137 (543)
T ss_pred hhhhcCHHHH---HHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHH
Confidence 2222 1222 567889998877777 899999999999998887776655
No 247
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=34.69 E-value=26 Score=38.70 Aligned_cols=70 Identities=19% Similarity=0.203 Sum_probs=58.5
Q ss_pred hhHHHHHHHhcCCChh-HHHHHHHHHhhhhccccccceeecccChhhhhHhhhcCCchhHHHHHHHHHHhh
Q 001385 451 DVLKSLKLLCAHKNPE-VQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAIL 520 (1088)
Q Consensus 451 g~lp~L~~Ll~~~~~~-vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l 520 (1088)
.++..|.+++...++. .-..|+.-++.++....+-..++...|+...++.++.+++++|+-+|..|+..+
T Consensus 356 ~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~ 426 (432)
T COG5231 356 EIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTC 426 (432)
T ss_pred HHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHH
Confidence 5688899999987665 223388888888888888888888899999999999999999999999887654
No 248
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=34.15 E-value=1.4e+02 Score=30.64 Aligned_cols=93 Identities=18% Similarity=0.192 Sum_probs=63.8
Q ss_pred ChhhhhhHHHHhccccCCchhhHHHHHCCCcHHHHHHhccCChHHHHHHHHHHHhhhccChHHHHHHhhhhhHHHHHHHh
Q 001385 381 NRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLC 460 (1088)
Q Consensus 381 N~~v~~~a~~~L~~L~~~~~~~~~l~~~~~~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd~~~~~v~~~g~lp~L~~Ll 460 (1088)
|+.++..++.+++.|+..-+.. -...++.+...|.++++.+...++.+|.+|...+ ... ++...+..+..++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~----ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d-~ik---~k~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNL----VEPYLPNLYKCLRDEDPLVRKTALLVLSHLILED-MIK---VKGQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHH----HHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC-cee---ehhhhhHHHHHHH
Confidence 4566777788888887432222 1123456777888999999999999999998432 211 2222347788888
Q ss_pred cCCChhHHHHHHHHHhhhhcc
Q 001385 461 AHKNPEVQRFALLAVGNLAFC 481 (1088)
Q Consensus 461 ~~~~~~vq~~Al~algnla~~ 481 (1088)
.+.+++|+..|...+..+...
T Consensus 73 ~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 73 VDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred cCCCHHHHHHHHHHHHHHHHh
Confidence 999999999888887766444
No 249
>PTZ00429 beta-adaptin; Provisional
Probab=34.07 E-value=1.3e+02 Score=38.20 Aligned_cols=143 Identities=15% Similarity=0.111 Sum_probs=96.1
Q ss_pred cccceeeccCChhhhhhHHHHhccccCCchhhHHHHHCCCcHHHHHHhccCChHHHHHHHHHHHhhhccChHHHHHHhhh
Q 001385 371 RQLISMISSDNRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTK 450 (1088)
Q Consensus 371 p~L~~L~Ls~N~~v~~~a~~~L~~L~~~~~~~~~l~~~~~~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd~~~~~v~~~ 450 (1088)
..++...-..++.|+..|+-++..+-...++ .+.+.+.++.+..+|.+.++.++.+++.+|.++...+... .-+..
T Consensus 143 ~~lkk~L~D~~pYVRKtAalai~Kly~~~pe--lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~--l~l~~ 218 (746)
T PTZ00429 143 EPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ--LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEK--IESSN 218 (746)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc--cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchh--hHHHH
Confidence 3445555577888999888888887643332 2345667778888888888999999999998887443221 22345
Q ss_pred hhHHHHHHHhcCCChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcCCchhHHHHHHHHHHhhcc
Q 001385 451 DVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGE 522 (1088)
Q Consensus 451 g~lp~L~~Ll~~~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~ 522 (1088)
+.+.+|...+...+...|...+..+.......+. . ...++..+...+.+.++.|.-+|+.++-.+..
T Consensus 219 ~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~--e---~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~ 285 (746)
T PTZ00429 219 EWVNRLVYHLPECNEWGQLYILELLAAQRPSDKE--S---AETLLTRVLPRMSHQNPAVVMGAIKVVANLAS 285 (746)
T ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcH--H---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Confidence 5667777777777788888777777543221111 1 12455566666778888999999998887764
No 250
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=32.96 E-value=16 Score=40.47 Aligned_cols=23 Identities=30% Similarity=0.576 Sum_probs=20.6
Q ss_pred cCceeeecccccCCCccCCCCCC
Q 001385 968 NGIRLSLLHGISGIGKSMPGATF 990 (1088)
Q Consensus 968 ~~~~~~~~~~~~~~~~~~~~~~~ 990 (1088)
++.++..++|+||+|||..|..+
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~ 39 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQV 39 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHH
T ss_pred CCeEEEEEEcCCcCCcceeeeec
Confidence 78999999999999999888663
No 251
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.65 E-value=1.9e+02 Score=36.16 Aligned_cols=134 Identities=21% Similarity=0.178 Sum_probs=96.0
Q ss_pred hhhHHHHhccccCCchhhHHHHHCCCcHHHHHHhccC--ChHHHHHHHHHHHhhhccChH------H----------HH-
Q 001385 385 VEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSF--APEEVKSVLQVVGQLAFASDT------V----------AQ- 445 (1088)
Q Consensus 385 ~~~a~~~L~~L~~~~~~~~~l~~~~~~~~Ll~lL~~~--~~~~~~~~l~~L~~L~~~sd~------~----------~~- 445 (1088)
+..|+++|..++. .....+-.-++++++..|..+ +++.+..++..+..+..+.|. . +.
T Consensus 40 RR~A~rgLKa~sr---kYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~ 116 (970)
T KOG0946|consen 40 RRDAVRGLKAFSR---KYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQ 116 (970)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHH
Confidence 4678888888873 224445556688999999754 467778889888888765541 1 22
Q ss_pred HHhhhhhHHHHHHHhcCCChhHHHHHHHHHhhhhcccccc--ceeecccChhhhhHhhhcCCchhHHHHHHHHHHhhc
Q 001385 446 KMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENR--RILVTSESLRDLLMRLTVGPEPRVNKAAARALAILG 521 (1088)
Q Consensus 446 ~v~~~g~lp~L~~Ll~~~~~~vq~~Al~algnla~~~~~~--~~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~ 521 (1088)
.+-..+-+..|..++-..+-.|+..|...+.++-.+.... .-++...-.+.-++.++....+.|+.++..-|.-+.
T Consensus 117 fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~ 194 (970)
T KOG0946|consen 117 FIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELV 194 (970)
T ss_pred HHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHH
Confidence 3345688899999999999999999998888886666443 334445566777888888888888888776655553
No 252
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=31.24 E-value=39 Score=33.78 Aligned_cols=43 Identities=23% Similarity=0.356 Sum_probs=21.6
Q ss_pred ceEEEecCCCch----HHHHHHHHHHHHHhcCCCCCcccceEEecchHHHHH
Q 001385 540 LRILSMDGGGMK----GLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLA 587 (1088)
Q Consensus 540 ~riLsLdGGG~R----G~~~~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA 587 (1088)
..++-+.||=.. -+-.-++.+.|.+..... =+|+|||+||+++
T Consensus 36 ad~I~~~GG~~~~l~~~l~~t~l~~~i~~~~~~G-----~vi~G~SAGA~i~ 82 (154)
T PF03575_consen 36 ADAIFLGGGDTFRLLRQLKETGLDEAIREAYRKG-----GVIIGTSAGAMIL 82 (154)
T ss_dssp SSEEEE--S-HHHHHHHHHHTTHHHHHHHHHHTT-----SEEEEETHHHHCT
T ss_pred CCEEEECCCCHHHHHHHHHhCCHHHHHHHHHHCC-----CEEEEEChHHhhc
Confidence 346667766422 222223444444432211 2799999999883
No 253
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=30.94 E-value=3.6e+02 Score=35.11 Aligned_cols=176 Identities=17% Similarity=0.153 Sum_probs=104.7
Q ss_pred hhHHHhhhhcCCCCc-cccccccccccccceeeccCC--hhhhhhHHHHhccccCCchhh-HHHHHCCCcHHHHHHhccC
Q 001385 346 LASALAKIMQDQENR-VVVGKDENAVRQLISMISSDN--RHVVEQACSALSSLAGDVSVA-MLLMKCDIMQPIIAVLKSF 421 (1088)
Q Consensus 346 l~~~L~~i~~l~~N~-l~ip~~~~~Lp~L~~L~Ls~N--~~v~~~a~~~L~~L~~~~~~~-~~l~~~~~~~~Ll~lL~~~ 421 (1088)
+...-++|+.+..+| .++.++-+..--+..|+=+.+ ++-+.-+.-.|+.|...-..- ..+.+.+.+.--+..+.++
T Consensus 532 LVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~ 611 (1387)
T KOG1517|consen 532 LVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDD 611 (1387)
T ss_pred HHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCC
Confidence 344556666555443 366666555555566554322 233333444666666543333 5666777666556666664
Q ss_pred C-hHHHHHHHHHHHhhhccChHHHHHHhhhhhHHHHHHHhcCCChhHHHHHHHHHhhhhcc----ccccceee-------
Q 001385 422 A-PEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFC----LENRRILV------- 489 (1088)
Q Consensus 422 ~-~~~~~~~l~~L~~L~~~sd~~~~~v~~~g~lp~L~~Ll~~~~~~vq~~Al~algnla~~----~~~~~~~v------- 489 (1088)
. +....-.+-||+.|--.-+...-.-.+.+|..+|..++...-++|+..|.-|+|.|.-. -+++...+
T Consensus 612 ~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~ 691 (1387)
T KOG1517|consen 612 PEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLD 691 (1387)
T ss_pred ccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcch
Confidence 2 33334467788877644444444567788999999999999999999999999988654 34444333
Q ss_pred -----cccChhh---hhHhhhcCCchhHHHHHHHHHHhhc
Q 001385 490 -----TSESLRD---LLMRLTVGPEPRVNKAAARALAILG 521 (1088)
Q Consensus 490 -----~~~~~~~---~L~~ll~~~~~~v~~~a~~aL~~l~ 521 (1088)
++..+.. .++.+.....+-++++..-+++...
T Consensus 692 ~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~ 731 (1387)
T KOG1517|consen 692 DERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFV 731 (1387)
T ss_pred hhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 2222222 2333445556667777666666553
No 254
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=29.49 E-value=1.5e+02 Score=29.91 Aligned_cols=67 Identities=18% Similarity=0.193 Sum_probs=51.0
Q ss_pred CCcHHHHHHhccC--ChHHHHHHHHHHHhhhccChHHHHHHhhhhhHHHHHHHhcCCChhHHHHHHHHH
Q 001385 409 DIMQPIIAVLKSF--APEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAV 475 (1088)
Q Consensus 409 ~~~~~Ll~lL~~~--~~~~~~~~l~~L~~L~~~sd~~~~~v~~~g~lp~L~~Ll~~~~~~vq~~Al~al 475 (1088)
..+..+...+... +...+..++..|.+++..+....+.|.+.=.+++|...+...++.+|+.|...+
T Consensus 58 ~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLi 126 (160)
T PF11841_consen 58 SFIKKIASYVNSSAMDASILQRSLAILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALI 126 (160)
T ss_pred HHHHHHHHHHccccccchHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3344555555433 345667799999999988888788888877899999999999999999887543
No 255
>KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=29.47 E-value=94 Score=35.42 Aligned_cols=51 Identities=29% Similarity=0.442 Sum_probs=32.1
Q ss_pred CceEEEecCCC-------chHH-H----HHHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhcC
Q 001385 539 GLRILSMDGGG-------MKGL-A----TVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVK 593 (1088)
Q Consensus 539 ~~riLsLdGGG-------~RG~-~----~~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~~ 593 (1088)
+++|+++|=.| -+|. | .+..++++....+.. .| .+.|.|.||++|..+|..
T Consensus 86 ~~~v~aiDl~G~g~~s~~~~~~~y~~~~~v~~i~~~~~~~~~~---~~-~lvghS~Gg~va~~~Aa~ 148 (326)
T KOG1454|consen 86 GLRVLAIDLPGHGYSSPLPRGPLYTLRELVELIRRFVKEVFVE---PV-SLVGHSLGGIVALKAAAY 148 (326)
T ss_pred ceEEEEEecCCCCcCCCCCCCCceehhHHHHHHHHHHHhhcCc---ce-EEEEeCcHHHHHHHHHHh
Confidence 68999988544 1222 3 444444444443321 12 589999999999999864
No 256
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.21 E-value=2.6e+02 Score=35.00 Aligned_cols=97 Identities=21% Similarity=0.178 Sum_probs=66.9
Q ss_pred cCChhhhhhHHHHhccccCCchhhHHHHHCCCcHHHHHHhccCChHHHHHHHHHHHhhhccChHHHHHHhhhhhHHHHHH
Q 001385 379 SDNRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKL 458 (1088)
Q Consensus 379 s~N~~v~~~a~~~L~~L~~~~~~~~~l~~~~~~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd~~~~~v~~~g~lp~L~~ 458 (1088)
..|+.++--|++.++.+..+. +......++..++++..+.+..-+.-+...+-. ...+.+.+.|.+..|..
T Consensus 97 d~np~iR~lAlrtm~~l~v~~------i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~---~~~~~~~~~gl~~~L~~ 167 (734)
T KOG1061|consen 97 DPNPLIRALALRTMGCLRVDK------ITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFD---IDPDLVEDSGLVDALKD 167 (734)
T ss_pred CCCHHHHHHHhhceeeEeehH------HHHHHHHHHHHhccCCChhHHHHHHHHHHHhhc---CChhhccccchhHHHHH
Confidence 356666666666666666321 222334677888888888777666555555542 22445778999999999
Q ss_pred HhcCCChhHHHHHHHHHhhhhccccc
Q 001385 459 LCAHKNPEVQRFALLAVGNLAFCLEN 484 (1088)
Q Consensus 459 Ll~~~~~~vq~~Al~algnla~~~~~ 484 (1088)
++.+.++-|--.|+.++..+.--..+
T Consensus 168 ll~D~~p~VVAnAlaaL~eI~e~~~~ 193 (734)
T KOG1061|consen 168 LLSDSNPMVVANALAALSEIHESHPS 193 (734)
T ss_pred HhcCCCchHHHHHHHHHHHHHHhCCC
Confidence 99999998988899999888655543
No 257
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=28.79 E-value=1.9e+02 Score=31.56 Aligned_cols=82 Identities=11% Similarity=0.027 Sum_probs=58.6
Q ss_pred HHHHHHHHHHhhhccChHHHHHHhhhhhHHHHHHHh-cCCChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhc
Q 001385 425 EVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLC-AHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTV 503 (1088)
Q Consensus 425 ~~~~~l~~L~~L~~~sd~~~~~v~~~g~lp~L~~Ll-~~~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~ 503 (1088)
.+..+++.|.-+++-........-....|.-|..|+ ....+.+|..++.++-.+-.....-....-..+....+..++.
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk 186 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK 186 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence 345678889888876655555555678899999999 4567899999999877665444433444557777788888876
Q ss_pred CCc
Q 001385 504 GPE 506 (1088)
Q Consensus 504 ~~~ 506 (1088)
...
T Consensus 187 ~~~ 189 (257)
T PF08045_consen 187 SKS 189 (257)
T ss_pred ccc
Confidence 554
No 258
>PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae.; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D ....
Probab=27.92 E-value=60 Score=35.01 Aligned_cols=19 Identities=37% Similarity=0.571 Sum_probs=16.8
Q ss_pred ceEEecchHHHHHHHHhcC
Q 001385 575 DLVCGTSTGGMLAIALAVK 593 (1088)
Q Consensus 575 Dli~GTStG~iiA~~l~~~ 593 (1088)
-.|+|.|+||..|+.++..
T Consensus 117 ~~i~G~S~GG~~Al~~~l~ 135 (251)
T PF00756_consen 117 RAIAGHSMGGYGALYLALR 135 (251)
T ss_dssp EEEEEETHHHHHHHHHHHH
T ss_pred eEEeccCCCcHHHHHHHHh
Confidence 4899999999999998753
No 259
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.79 E-value=1.8e+02 Score=32.38 Aligned_cols=109 Identities=21% Similarity=0.258 Sum_probs=73.1
Q ss_pred HHHHHhccCChHHHHHHHHHHHhhhccChHHHHHHhhhhhHHHHHHHhcCCChhHHHHHHHHHhhhhccccccceeeccc
Q 001385 413 PIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSE 492 (1088)
Q Consensus 413 ~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd~~~~~v~~~g~lp~L~~Ll~~~~~~vq~~Al~algnla~~~~~~~~~v~~~ 492 (1088)
.++.++.+.+|.+...+...+..+.-. ...+-.--+.-.|+.|..|+....+ -.+|..+++|++....-+..++ +.
T Consensus 7 elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll-~~ 82 (353)
T KOG2973|consen 7 ELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLL-QD 82 (353)
T ss_pred HHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHH-HH
Confidence 456677777776666666666555532 1111111224468888888887766 3457889999876666655555 33
Q ss_pred ChhhhhHhhhcCCchhHHHHHHHHHHhhcchHHH
Q 001385 493 SLRDLLMRLTVGPEPRVNKAAARALAILGENESL 526 (1088)
Q Consensus 493 ~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~ 526 (1088)
+...++..+..+....-+..|..+++++..+..
T Consensus 83 -~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~ 115 (353)
T KOG2973|consen 83 -LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDE 115 (353)
T ss_pred -HHHHHHHHhcCcccchHHHHHHHHHHhccCchH
Confidence 777777777778788889999999999877533
No 260
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=27.75 E-value=1.1e+02 Score=37.80 Aligned_cols=157 Identities=15% Similarity=0.108 Sum_probs=96.2
Q ss_pred ccccccccccceeeccCChhhhhhHHHHhccccCCchhh---HHHHHCCCcHHHHHHhccCChHHHHHHHHHHHhhhcc-
Q 001385 364 GKDENAVRQLISMISSDNRHVVEQACSALSSLAGDVSVA---MLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFA- 439 (1088)
Q Consensus 364 p~~~~~Lp~L~~L~Ls~N~~v~~~a~~~L~~L~~~~~~~---~~l~~~~~~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~- 439 (1088)
|+.-+-+|.|.-+.-+....|.+..+..++.|+...++. ...+. ++-.|+.+|+....+....+...++.++..
T Consensus 879 pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMR--IcfeLlelLkahkK~iRRaa~nTfG~IakaI 956 (1172)
T KOG0213|consen 879 PPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMR--ICFELLELLKAHKKEIRRAAVNTFGYIAKAI 956 (1172)
T ss_pred CChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhhHHHHhc
Confidence 333456888888888888889999999999999766665 33332 344677777777666554443332222211
Q ss_pred --Ch-------------HH--------HHHHhh-hh---hHHHHHHHhcCCChhHHHHHHHHHhhhhccccccceeeccc
Q 001385 440 --SD-------------TV--------AQKMLT-KD---VLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSE 492 (1088)
Q Consensus 440 --sd-------------~~--------~~~v~~-~g---~lp~L~~Ll~~~~~~vq~~Al~algnla~~~~~~~~~v~~~ 492 (1088)
.| .. +..|.+ +| ++|.|..=-...+..||-..|.++..+--.-.+..+-- -.
T Consensus 957 GPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdY-iy 1035 (1172)
T KOG0213|consen 957 GPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDY-IY 1035 (1172)
T ss_pred CHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhH-HH
Confidence 11 00 222322 23 56666666666788899988888876532222222111 11
Q ss_pred ChhhhhHhhhcCCchhHHHHHHHHHHhhcch
Q 001385 493 SLRDLLMRLTVGPEPRVNKAAARALAILGEN 523 (1088)
Q Consensus 493 ~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 523 (1088)
.+.|+|-..+...+...+.-|+.++.+++-.
T Consensus 1036 av~PlleDAlmDrD~vhRqta~~~I~Hl~Lg 1066 (1172)
T KOG0213|consen 1036 AVTPLLEDALMDRDLVHRQTAMNVIKHLALG 1066 (1172)
T ss_pred HhhHHHHHhhccccHHHHHHHHHHHHHHhcC
Confidence 3457777777888888888888888876633
No 261
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=26.18 E-value=1.7e+02 Score=25.36 Aligned_cols=53 Identities=17% Similarity=0.224 Sum_probs=38.1
Q ss_pred hhhHHHHhccccCCchhhHHHHHCCCcHHHHHHhccCCh-HHHHHHHHHHHhhh
Q 001385 385 VEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAP-EEVKSVLQVVGQLA 437 (1088)
Q Consensus 385 ~~~a~~~L~~L~~~~~~~~~l~~~~~~~~Ll~lL~~~~~-~~~~~~l~~L~~L~ 437 (1088)
...++|+++++.....-...+.+.++++.++++....+- ....-+|-+|.-++
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis 57 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLIS 57 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHh
Confidence 357899999999765555666778999999888765554 33444677777665
No 262
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=25.74 E-value=64 Score=37.68 Aligned_cols=146 Identities=21% Similarity=0.197 Sum_probs=80.5
Q ss_pred cCChhhhhhHHHHhccccCCchhh-HHHHHCCCcHHHHHHhccCChHHHHHHHHHHHhhhcc------C-hHH----HHH
Q 001385 379 SDNRHVVEQACSALSSLAGDVSVA-MLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFA------S-DTV----AQK 446 (1088)
Q Consensus 379 s~N~~v~~~a~~~L~~L~~~~~~~-~~l~~~~~~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~------s-d~~----~~~ 446 (1088)
+.|..+..+|.++++-.--+.... +.....+..+.++..+.+..-..+..++-.++++.-. + +.. +.+
T Consensus 402 ~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ 481 (728)
T KOG4535|consen 402 SKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGL 481 (728)
T ss_pred hHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHH
Confidence 344556777788777777776666 6666666666666666654444555566666555310 1 001 111
Q ss_pred HhhhhhHHHHHHHhcCCChhHHHHHHHHHhhhhccccccce----eecccChhhhhHhhhcCCchhHHHHHHHHHHhhcc
Q 001385 447 MLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRI----LVTSESLRDLLMRLTVGPEPRVNKAAARALAILGE 522 (1088)
Q Consensus 447 v~~~g~lp~L~~Ll~~~~~~vq~~Al~algnla~~~~~~~~----~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~ 522 (1088)
.++ .+=++..+....+.+|.-.|.+++||+-.-.+.-.+ ...+......+-........+|+.+||.++.++-.
T Consensus 482 ll~--~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfk 559 (728)
T KOG4535|consen 482 LLL--KMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFK 559 (728)
T ss_pred HHH--HHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhc
Confidence 111 122223333445677888899999988433321111 00111111222222234456899999999999998
Q ss_pred hHHH
Q 001385 523 NESL 526 (1088)
Q Consensus 523 ~~~~ 526 (1088)
++.+
T Consensus 560 n~a~ 563 (728)
T KOG4535|consen 560 NPAL 563 (728)
T ss_pred Cccc
Confidence 8754
No 263
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=25.57 E-value=3.2e+02 Score=30.67 Aligned_cols=94 Identities=12% Similarity=0.134 Sum_probs=56.4
Q ss_pred cccccceeeccCChhhhhhHHHHhccccCCchhhHHHHHCCCcHHHHHH-h-ccCChHHHHHHHHHHHhhhccChHHHHH
Q 001385 369 AVRQLISMISSDNRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAV-L-KSFAPEEVKSVLQVVGQLAFASDTVAQK 446 (1088)
Q Consensus 369 ~Lp~L~~L~Ls~N~~v~~~a~~~L~~L~~~~~~~~~l~~~~~~~~Ll~l-L-~~~~~~~~~~~l~~L~~L~~~sd~~~~~ 446 (1088)
-++.+..-....|..|...+...+..|+.....+..+.......++-.. | -..+.-.....+..+.++..-+......
T Consensus 129 ilklildcIggeddeVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesane 208 (524)
T KOG4413|consen 129 ILKLILDCIGGEDDEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANE 208 (524)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhH
Confidence 3555666666677788888888888888766555666666655554211 1 1122222333555666665556666666
Q ss_pred HhhhhhHHHHHHHhcC
Q 001385 447 MLTKDVLKSLKLLCAH 462 (1088)
Q Consensus 447 v~~~g~lp~L~~Ll~~ 462 (1088)
+-+.|.+..|..=+..
T Consensus 209 ckkSGLldlLeaElkG 224 (524)
T KOG4413|consen 209 CKKSGLLDLLEAELKG 224 (524)
T ss_pred hhhhhHHHHHHHHhcC
Confidence 6777777777665554
No 264
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.17 E-value=2.9e+02 Score=34.28 Aligned_cols=98 Identities=15% Similarity=0.161 Sum_probs=47.0
Q ss_pred CChhhhhhHHHHhccccC--CchhhHHHHHCCCcHHHHHHhccCCh--HHH----HH--HHHHHHhhhccChHHHHHHhh
Q 001385 380 DNRHVVEQACSALSSLAG--DVSVAMLLMKCDIMQPIIAVLKSFAP--EEV----KS--VLQVVGQLAFASDTVAQKMLT 449 (1088)
Q Consensus 380 ~N~~v~~~a~~~L~~L~~--~~~~~~~l~~~~~~~~Ll~lL~~~~~--~~~----~~--~l~~L~~L~~~sd~~~~~v~~ 449 (1088)
.+|+++...++.|.+.+. |.+...++.+ +.+.++.-...+.. ..+ .+ .|.+ -+|+.+-|...+.+..
T Consensus 253 P~PWL~vKl~rlLq~~p~~~D~~~r~~l~e--vl~~iLnk~~~~~~~k~vq~~na~naVLFea-I~l~~h~D~e~~ll~~ 329 (938)
T KOG1077|consen 253 PAPWLQVKLLRLLQIYPTPEDPSTRARLNE--VLERILNKAQEPPKSKKVQHSNAKNAVLFEA-ISLAIHLDSEPELLSR 329 (938)
T ss_pred CChHHHHHHHHHHHhCCCCCCchHHHHHHH--HHHHHHhccccCccccchHhhhhHHHHHHHH-HHHHHHcCCcHHHHHH
Confidence 466777777777777765 3333333332 23333333221111 111 11 1232 2344444444433333
Q ss_pred hhhHHHHHHHhcCCChhHHHHHHHHHhhhhccc
Q 001385 450 KDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCL 482 (1088)
Q Consensus 450 ~g~lp~L~~Ll~~~~~~vq~~Al~algnla~~~ 482 (1088)
++.+|-.++.+....++=.|+..+..++.+.
T Consensus 330 --~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~ 360 (938)
T KOG1077|consen 330 --AVNQLGQFLSHRETNIRYLALESMCKLASSE 360 (938)
T ss_pred --HHHHHHHHhhcccccchhhhHHHHHHHHhcc
Confidence 3566666666666666666666666655553
No 265
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=24.56 E-value=50 Score=47.09 Aligned_cols=41 Identities=15% Similarity=0.118 Sum_probs=30.2
Q ss_pred EecCCCCCCCc--cccCCCCCCeEEeeCCCCCCCccccchhhh
Q 001385 272 RLFGNPLEFLP--EILPLLKLRHLSLANIRIVADENLRSVNVQ 312 (1088)
Q Consensus 272 ~Ls~N~l~~l~--~l~~l~~L~~L~L~~N~l~~~~~l~~l~~~ 312 (1088)
||++|+|+.++ .|..+++|+.|+|++|++.+.+.+..+...
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~WL~~W 43 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARLPRW 43 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccccHHHHHH
Confidence 46778888666 366778888888888888888777665433
No 266
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=23.98 E-value=80 Score=34.05 Aligned_cols=15 Identities=27% Similarity=0.113 Sum_probs=12.4
Q ss_pred eEEecchHHHHHHHH
Q 001385 576 LVCGTSTGGMLAIAL 590 (1088)
Q Consensus 576 li~GTStG~iiA~~l 590 (1088)
.++|||+|++++.--
T Consensus 115 ~~~G~SAGAii~~~~ 129 (233)
T PRK05282 115 PYIGWSAGANVAGPT 129 (233)
T ss_pred EEEEECHHHHhhhcc
Confidence 689999999996553
No 267
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=22.96 E-value=1.4e+02 Score=32.42 Aligned_cols=33 Identities=21% Similarity=0.309 Sum_probs=23.4
Q ss_pred HHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhc
Q 001385 556 VQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAV 592 (1088)
Q Consensus 556 ~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~ 592 (1088)
+..+.++.+.++.+ .+ .+.|.|.||.+|..++.
T Consensus 88 ~~~l~~~l~~l~~~---~~-~lvG~S~Gg~ia~~~a~ 120 (282)
T TIGR03343 88 ARAVKGLMDALDIE---KA-HLVGNSMGGATALNFAL 120 (282)
T ss_pred HHHHHHHHHHcCCC---Ce-eEEEECchHHHHHHHHH
Confidence 45555665655432 23 68999999999999975
No 268
>PF13245 AAA_19: Part of AAA domain
Probab=22.52 E-value=46 Score=28.96 Aligned_cols=19 Identities=32% Similarity=0.469 Sum_probs=15.9
Q ss_pred CceeeecccccCCCccCCC
Q 001385 969 GIRLSLLHGISGIGKSMPG 987 (1088)
Q Consensus 969 ~~~~~~~~~~~~~~~~~~~ 987 (1088)
+-++.++.|-.|+|||...
T Consensus 9 ~~~~~vv~g~pGtGKT~~~ 27 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTL 27 (76)
T ss_pred hCCeEEEECCCCCCHHHHH
Confidence 6788999999999998543
No 269
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=21.92 E-value=68 Score=30.99 Aligned_cols=17 Identities=41% Similarity=0.565 Sum_probs=15.5
Q ss_pred eEEecchHHHHHHHHhc
Q 001385 576 LVCGTSTGGMLAIALAV 592 (1088)
Q Consensus 576 li~GTStG~iiA~~l~~ 592 (1088)
+|+|.|.||.+|.+++.
T Consensus 67 ~itGHSLGGalA~l~a~ 83 (140)
T PF01764_consen 67 VITGHSLGGALASLAAA 83 (140)
T ss_dssp EEEEETHHHHHHHHHHH
T ss_pred hhhccchHHHHHHHHHH
Confidence 68999999999999975
No 270
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=21.89 E-value=2e+02 Score=32.84 Aligned_cols=53 Identities=17% Similarity=0.314 Sum_probs=32.1
Q ss_pred CCceEEEec--CCCc------hHHHHHHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhcC
Q 001385 538 QGLRILSMD--GGGM------KGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVK 593 (1088)
Q Consensus 538 ~~~riLsLd--GGG~------RG~~~~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~~ 593 (1088)
+++||+++| |.|- .-.-.+..+.++.+.++.. ..=.++|.|+||.||..++..
T Consensus 98 ~~~~Vi~~Dl~G~g~s~~~~~~~~~~a~dl~~ll~~l~l~---~~~~lvG~SmGG~vA~~~A~~ 158 (343)
T PRK08775 98 ARFRLLAFDFIGADGSLDVPIDTADQADAIALLLDALGIA---RLHAFVGYSYGALVGLQFASR 158 (343)
T ss_pred cccEEEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCC---cceEEEEECHHHHHHHHHHHH
Confidence 357777776 3320 1112345555666655531 112589999999999999864
No 271
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=21.45 E-value=1.2e+02 Score=31.09 Aligned_cols=76 Identities=14% Similarity=0.213 Sum_probs=51.9
Q ss_pred HHHHHCCCcHHHHHHhccC---------ChHHHHHHHHHHHhhhccChHHHHHHhh-hhhHHHHHHHhcCCChhHHHHHH
Q 001385 403 MLLMKCDIMQPIIAVLKSF---------APEEVKSVLQVVGQLAFASDTVAQKMLT-KDVLKSLKLLCAHKNPEVQRFAL 472 (1088)
Q Consensus 403 ~~l~~~~~~~~Ll~lL~~~---------~~~~~~~~l~~L~~L~~~sd~~~~~v~~-~g~lp~L~~Ll~~~~~~vq~~Al 472 (1088)
...++.|++..|+.+|... ....+..++.|+..++ .+......++. .+++..|...+.+.+..+++.|+
T Consensus 101 ~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~-n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~l 179 (187)
T PF06371_consen 101 QEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM-NTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLAL 179 (187)
T ss_dssp HHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT-SSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHH
T ss_pred HHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH-ccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHH
Confidence 4555667777776665422 1244566899998888 44454555544 78999999999999999999898
Q ss_pred HHHhhhh
Q 001385 473 LAVGNLA 479 (1088)
Q Consensus 473 ~algnla 479 (1088)
..++.++
T Consensus 180 eiL~~lc 186 (187)
T PF06371_consen 180 EILAALC 186 (187)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887654
No 272
>smart00827 PKS_AT Acyl transferase domain in polyketide synthase (PKS) enzymes.
Probab=21.30 E-value=2.1e+02 Score=31.75 Aligned_cols=48 Identities=25% Similarity=0.347 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhcCCCCHHHHHHHHHHhh
Q 001385 555 TVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLG 608 (1088)
Q Consensus 555 ~~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~~~~s~~e~~~~y~~~~ 608 (1088)
++.+.+.+. ..|.+ .|.++|.|.|-+.|+.++ +-++.++..++-...+
T Consensus 69 ~~a~~~~l~-~~Gi~----p~~~~GhSlGE~aA~~~a-g~~~~~~~l~l~~~r~ 116 (298)
T smart00827 69 QVALARLWR-SWGVR----PDAVVGHSLGEIAAAYVA-GVLSLEDAARLVAARG 116 (298)
T ss_pred HHHHHHHHH-HcCCc----ccEEEecCHHHHHHHHHh-CCCCHHHHHHHHHHHH
Confidence 444444553 33433 689999999999998876 4589999877765443
No 273
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.
Probab=21.01 E-value=1.9e+02 Score=33.22 Aligned_cols=53 Identities=15% Similarity=0.184 Sum_probs=31.8
Q ss_pred CCCceEEEec--CCCch----HH--H----HHHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhcC
Q 001385 537 KQGLRILSMD--GGGMK----GL--A----TVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVK 593 (1088)
Q Consensus 537 ~~~~riLsLd--GGG~R----G~--~----~~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~~ 593 (1088)
..|++|.++| |.|.. ++ + ...+++.+.+..+.. .+ .++|.|.||.+++.++..
T Consensus 92 ~~G~~V~~~D~~g~g~s~~~~~~~d~~~~~~~~~v~~l~~~~~~~---~i-~lvGhS~GG~i~~~~~~~ 156 (350)
T TIGR01836 92 ERGQDVYLIDWGYPDRADRYLTLDDYINGYIDKCVDYICRTSKLD---QI-SLLGICQGGTFSLCYAAL 156 (350)
T ss_pred HCCCeEEEEeCCCCCHHHhcCCHHHHHHHHHHHHHHHHHHHhCCC---cc-cEEEECHHHHHHHHHHHh
Confidence 4578999988 32311 11 1 223455555554421 11 589999999999988653
No 274
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=20.99 E-value=2.3e+02 Score=32.07 Aligned_cols=58 Identities=26% Similarity=0.080 Sum_probs=44.2
Q ss_pred hhHHHHHHHHHhhhhcccccc-ceeecccChhhhhHhhhcCCchhHHHHHHHHHHhhcch
Q 001385 465 PEVQRFALLAVGNLAFCLENR-RILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGEN 523 (1088)
Q Consensus 465 ~~vq~~Al~algnla~~~~~~-~~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 523 (1088)
+.+...|+.+.+-+....+.. .. -.-...++.|..++.+.+..|+-.|..+|+.|.+.
T Consensus 200 ~~l~~aAL~aW~lLlt~~~~~~~~-~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~ 258 (309)
T PF05004_consen 200 AALVAAALSAWALLLTTLPDSKLE-DLLEEALPALSELLDSDDVDVRIAAGEAIALLYEL 258 (309)
T ss_pred cHHHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 568889999988776554442 22 11235678899999999999999999999998655
No 275
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=20.70 E-value=3.1e+02 Score=35.61 Aligned_cols=159 Identities=14% Similarity=0.140 Sum_probs=102.0
Q ss_pred cccccccccccceeeccCChhhhhhHHHHhccccCCchhh-HHHHHCCCcHHHHHHhcc-C--ChHHHHHHHHHHHhhhc
Q 001385 363 VGKDENAVRQLISMISSDNRHVVEQACSALSSLAGDVSVA-MLLMKCDIMQPIIAVLKS-F--APEEVKSVLQVVGQLAF 438 (1088)
Q Consensus 363 ip~~~~~Lp~L~~L~Ls~N~~v~~~a~~~L~~L~~~~~~~-~~l~~~~~~~~Ll~lL~~-~--~~~~~~~~l~~L~~L~~ 438 (1088)
+.-.+|-+|...+|.-+.-.+++..-+-.-+.|-.-.++| ..+++.++-...+++|.. . ++|....+.-.|..++.
T Consensus 507 LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~ 586 (1387)
T KOG1517|consen 507 LALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVR 586 (1387)
T ss_pred hhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHc
Confidence 3344577899888888888887777666666666655777 666666655555555554 2 12444455556666663
Q ss_pred cChHHH-HHHhhhhhHHHHHHHhcCC-ChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcCCchhHHHHHHHH
Q 001385 439 ASDTVA-QKMLTKDVLKSLKLLCAHK-NPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARA 516 (1088)
Q Consensus 439 ~sd~~~-~~v~~~g~lp~L~~Ll~~~-~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~~~~~v~~~a~~a 516 (1088)
+-... ...++.+.|--..+.+.+. .+-.+.=.+-++|.+=..-+.-+..=.+.++.+-|..++..+-++|+.+|..|
T Consensus 587 -nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFA 665 (1387)
T KOG1517|consen 587 -NFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFA 665 (1387)
T ss_pred -ccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHH
Confidence 23332 3456666666555555553 33333333455776644444444444577888999999999999999999999
Q ss_pred HHhhcc
Q 001385 517 LAILGE 522 (1088)
Q Consensus 517 L~~l~~ 522 (1088)
|.-+-.
T Consensus 666 Lgtfl~ 671 (1387)
T KOG1517|consen 666 LGTFLS 671 (1387)
T ss_pred HHHHhc
Confidence 987654
No 276
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=20.54 E-value=2.4e+02 Score=34.33 Aligned_cols=109 Identities=17% Similarity=0.162 Sum_probs=69.4
Q ss_pred cHHHHHHhccCChHHHHHHHHHHHhhhccChHHHHHHhhhhhHHHHHHHhcCCChhHHHHHHHHHhhhhccccccceeec
Q 001385 411 MQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVT 490 (1088)
Q Consensus 411 ~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd~~~~~v~~~g~lp~L~~Ll~~~~~~vq~~Al~algnla~~~~~~~~~v~ 490 (1088)
.+.++..+.+..+.+...+..+...+..+-....-.. .+|.+..-+....++-+..++..+|.++.|...+-...
T Consensus 218 lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~----llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~- 292 (569)
T KOG1242|consen 218 LPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKL----LLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLC- 292 (569)
T ss_pred HHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhH----hhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHH-
Confidence 3344444444444444444444444432222211111 23333333333466677778899999999998887765
Q ss_pred ccChhhhhHhhhcCCchhHHHHHHHHHHhhcchH
Q 001385 491 SESLRDLLMRLTVGPEPRVNKAAARALAILGENE 524 (1088)
Q Consensus 491 ~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 524 (1088)
-..+.|.+...+-...+++++.+..++..++.-.
T Consensus 293 lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svi 326 (569)
T KOG1242|consen 293 LPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVI 326 (569)
T ss_pred HhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhh
Confidence 5578899999999999999999999998887543
No 277
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.51 E-value=4.1e+02 Score=33.45 Aligned_cols=143 Identities=20% Similarity=0.227 Sum_probs=85.4
Q ss_pred ccccceeeccCChhhhhhHHHHhccccCCchhhHHHHHCCCcHHHHHHhccCChHHHHHHHH---------------HHH
Q 001385 370 VRQLISMISSDNRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQ---------------VVG 434 (1088)
Q Consensus 370 Lp~L~~L~Ls~N~~v~~~a~~~L~~L~~~~~~~~~l~~~~~~~~Ll~lL~~~~~~~~~~~l~---------------~L~ 434 (1088)
|.+..-|.-|.|+.|.-..+.++-.++... -...++++|+++|.+.. +.+...++ .++
T Consensus 289 L~stkpLl~S~n~sVVmA~aql~y~lAP~~------~~~~i~kaLvrLLrs~~-~vqyvvL~nIa~~s~~~~~lF~P~lK 361 (968)
T KOG1060|consen 289 LQSTKPLLQSRNPSVVMAVAQLFYHLAPKN------QVTKIAKALVRLLRSNR-EVQYVVLQNIATISIKRPTLFEPHLK 361 (968)
T ss_pred HHhccHHHhcCCcHHHHHHHhHHHhhCCHH------HHHHHHHHHHHHHhcCC-cchhhhHHHHHHHHhcchhhhhhhhh
Confidence 566777888999988888888887777543 12234677888776543 22222232 232
Q ss_pred hh-hccChHHHHHHhhh-------------hhHHHHHHHhcCCChhHHHHHHHHHhhhhccccccceeecccChhhhhHh
Q 001385 435 QL-AFASDTVAQKMLTK-------------DVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMR 500 (1088)
Q Consensus 435 ~L-~~~sd~~~~~v~~~-------------g~lp~L~~Ll~~~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ 500 (1088)
++ ...+|...-.+.+. -+++.|+..+.+.+-++-..|..++|..|.-.-. + ...-+.-|+.
T Consensus 362 sFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~s----v-~~tCL~gLv~ 436 (968)
T KOG1060|consen 362 SFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGS----V-TDTCLNGLVQ 436 (968)
T ss_pred ceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCc----h-hhHHHHHHHH
Confidence 22 12344432222221 2456667777777666655566666655433222 2 2334566788
Q ss_pred hhcCCchhHHHHHHHHHHhhcchH
Q 001385 501 LTVGPEPRVNKAAARALAILGENE 524 (1088)
Q Consensus 501 ll~~~~~~v~~~a~~aL~~l~~~~ 524 (1088)
++.+.++.|..++...+..+-+..
T Consensus 437 Llsshde~Vv~eaV~vIk~Llq~~ 460 (968)
T KOG1060|consen 437 LLSSHDELVVAEAVVVIKRLLQKD 460 (968)
T ss_pred HHhcccchhHHHHHHHHHHHHhhC
Confidence 888888889999888887775543
No 278
>COG1647 Esterase/lipase [General function prediction only]
Probab=20.40 E-value=55 Score=34.67 Aligned_cols=23 Identities=35% Similarity=0.525 Sum_probs=18.8
Q ss_pred eEEecchHHHHHHHHhcCCCCHHH
Q 001385 576 LVCGTSTGGMLAIALAVKLMTLDQ 599 (1088)
Q Consensus 576 li~GTStG~iiA~~l~~~~~s~~e 599 (1088)
.|+|-|+||++|+.||.. +++..
T Consensus 88 ~v~GlSmGGv~alkla~~-~p~K~ 110 (243)
T COG1647 88 AVVGLSMGGVFALKLAYH-YPPKK 110 (243)
T ss_pred EEEeecchhHHHHHHHhh-CCccc
Confidence 689999999999999864 55544
No 279
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.33 E-value=2.2e+02 Score=35.58 Aligned_cols=73 Identities=16% Similarity=0.130 Sum_probs=60.5
Q ss_pred hhHHHHHHHhcCCChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcCCchhHHHHHHHHHHhhcch
Q 001385 451 DVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGEN 523 (1088)
Q Consensus 451 g~lp~L~~Ll~~~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 523 (1088)
.++|-.++-+.+++.+-+..|..+.|.+-.|.+...-.-+...+++.++.++..+.--++..+.|++..+.+.
T Consensus 364 ~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~ 436 (859)
T KOG1241|consen 364 HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADF 436 (859)
T ss_pred hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhh
Confidence 5778888888999999999999999998877766544444557889999999988888899999999888765
Done!