Query 001385
Match_columns 1088
No_of_seqs 1116 out of 6189
Neff 8.4
Searched_HMMs 29240
Date Tue Mar 26 01:22:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001385.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001385hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1oxw_A Patatin; alpha/beta cla 100.0 2.7E-47 9.3E-52 436.4 22.1 303 535-906 11-366 (373)
2 1ogq_A PGIP-2, polygalacturona 99.9 3.9E-24 1.3E-28 241.3 12.7 243 125-386 50-306 (313)
3 4akf_A VIPD; transferase; 2.90 99.9 8.9E-24 3.1E-28 241.4 15.3 205 538-787 35-304 (577)
4 4fcg_A Uncharacterized protein 99.9 7.4E-23 2.5E-27 232.3 18.9 199 123-330 79-291 (328)
5 3o6n_A APL1; leucine-rich repe 99.9 4E-22 1.4E-26 232.1 20.8 256 120-396 64-364 (390)
6 4fmz_A Internalin; leucine ric 99.9 3.4E-21 1.2E-25 220.3 26.9 237 121-382 106-344 (347)
7 1ogq_A PGIP-2, polygalacturona 99.9 6E-23 2.1E-27 231.6 11.8 217 119-343 70-295 (313)
8 4ecn_A Leucine-rich repeat pro 99.9 1.2E-22 4.1E-27 256.5 15.5 246 122-382 488-764 (876)
9 3rgz_A Protein brassinosteroid 99.9 2.3E-22 7.7E-27 254.8 17.7 242 124-382 393-715 (768)
10 3oja_B Anopheles plasmodium-re 99.9 6.2E-22 2.1E-26 243.5 20.6 257 119-396 69-370 (597)
11 4ecn_A Leucine-rich repeat pro 99.9 2E-22 6.7E-27 254.5 16.1 252 119-382 442-739 (876)
12 2id5_A Lingo-1, leucine rich r 99.9 1.4E-21 4.6E-26 233.9 22.0 250 118-382 49-307 (477)
13 3tu3_B EXOU; type III secretio 99.9 1.7E-22 5.7E-27 231.6 12.6 198 537-788 125-383 (711)
14 4eco_A Uncharacterized protein 99.9 1.4E-22 4.8E-27 250.9 12.4 249 119-382 241-524 (636)
15 4fmz_A Internalin; leucine ric 99.9 5.3E-21 1.8E-25 218.7 24.6 197 120-330 61-257 (347)
16 3rgz_A Protein brassinosteroid 99.9 9.8E-22 3.3E-26 248.9 20.0 250 119-386 412-742 (768)
17 4eco_A Uncharacterized protein 99.9 1.7E-22 5.9E-27 250.1 12.6 252 119-382 200-499 (636)
18 3o6n_A APL1; leucine-rich repe 99.9 1.3E-21 4.4E-26 227.8 18.6 240 123-382 43-306 (390)
19 1xku_A Decorin; proteoglycan, 99.9 4.1E-21 1.4E-25 218.2 22.2 201 120-332 71-279 (330)
20 3v47_A TOLL-like receptor 5B a 99.9 2.2E-21 7.4E-26 230.5 20.4 114 119-233 48-167 (455)
21 2z80_A TOLL-like receptor 2, v 99.9 6.5E-22 2.2E-26 227.0 14.4 248 125-386 52-316 (353)
22 1xku_A Decorin; proteoglycan, 99.9 8E-21 2.7E-25 215.8 23.3 239 124-383 51-305 (330)
23 2id5_A Lingo-1, leucine rich r 99.9 5.6E-21 1.9E-25 228.5 23.0 271 92-386 56-335 (477)
24 3v47_A TOLL-like receptor 5B a 99.9 2.5E-21 8.6E-26 230.0 19.2 136 125-260 30-171 (455)
25 1o6v_A Internalin A; bacterial 99.9 6.4E-21 2.2E-25 227.3 21.6 238 119-382 62-320 (466)
26 2ft3_A Biglycan; proteoglycan, 99.9 6.5E-21 2.2E-25 216.8 20.5 202 119-333 72-281 (332)
27 2ft3_A Biglycan; proteoglycan, 99.9 3.9E-21 1.3E-25 218.6 18.4 238 124-383 53-306 (332)
28 4fcg_A Uncharacterized protein 99.9 5.6E-21 1.9E-25 216.8 19.4 203 119-330 98-315 (328)
29 3zyi_A Leucine-rich repeat-con 99.9 4.4E-21 1.5E-25 227.8 19.1 225 125-386 75-305 (452)
30 3vq2_A TLR4, TOLL-like recepto 99.9 1E-20 3.5E-25 233.3 22.9 270 92-382 32-410 (606)
31 3oja_B Anopheles plasmodium-re 99.9 3.1E-21 1.1E-25 237.3 18.2 249 124-382 50-335 (597)
32 3zyj_A Leucine-rich repeat-con 99.9 6.1E-21 2.1E-25 225.8 19.3 225 125-386 64-294 (440)
33 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 8.6E-21 3E-25 231.8 21.1 89 118-210 69-159 (562)
34 2z7x_B TOLL-like receptor 1, v 99.9 5.7E-21 2E-25 231.0 19.3 106 92-210 21-128 (520)
35 2z66_A Variable lymphocyte rec 99.9 3.5E-21 1.2E-25 216.3 15.7 202 124-330 27-237 (306)
36 3o53_A Protein LRIM1, AGAP0063 99.8 2.9E-22 9.8E-27 226.5 6.4 202 119-334 28-232 (317)
37 3t6q_A CD180 antigen; protein- 99.8 2.2E-20 7.4E-25 230.4 22.4 264 93-382 34-361 (606)
38 3t6q_A CD180 antigen; protein- 99.8 2.6E-20 8.7E-25 229.7 22.7 262 119-385 272-561 (606)
39 3o53_A Protein LRIM1, AGAP0063 99.8 1.1E-21 3.8E-26 221.6 9.3 244 126-393 11-259 (317)
40 1o6v_A Internalin A; bacterial 99.8 4.4E-20 1.5E-24 220.1 23.4 236 121-382 86-342 (466)
41 3bz5_A Internalin-J, INLJ; leu 99.8 5.2E-20 1.8E-24 218.4 22.8 236 120-382 59-297 (457)
42 1h6u_A Internalin H; cell adhe 99.8 2.2E-20 7.4E-25 210.1 18.3 197 121-332 37-233 (308)
43 3bz5_A Internalin-J, INLJ; leu 99.8 4.1E-20 1.4E-24 219.3 21.3 228 120-382 37-265 (457)
44 1ozn_A Reticulon 4 receptor; N 99.8 3E-20 1E-24 206.4 18.8 202 124-330 31-239 (285)
45 3oja_A Leucine-rich immune mol 99.8 1.7E-21 5.8E-26 233.2 9.2 231 123-378 32-269 (487)
46 3zyj_A Leucine-rich repeat-con 99.8 5.1E-20 1.7E-24 217.9 21.2 224 92-330 64-293 (440)
47 3zyi_A Leucine-rich repeat-con 99.8 6.4E-20 2.2E-24 217.8 21.0 224 92-330 75-304 (452)
48 1wwl_A Monocyte differentiatio 99.8 1.3E-20 4.6E-25 212.2 13.8 199 123-330 93-310 (312)
49 1wwl_A Monocyte differentiatio 99.8 3.3E-22 1.1E-26 225.4 0.5 244 119-382 37-307 (312)
50 1p9a_G Platelet glycoprotein I 99.8 7.1E-20 2.4E-24 203.9 19.3 199 121-329 6-208 (290)
51 1ozn_A Reticulon 4 receptor; N 99.8 1.1E-19 3.6E-24 202.0 20.3 206 93-307 33-244 (285)
52 2z63_A TOLL-like receptor 4, v 99.8 1E-19 3.6E-24 222.4 21.8 253 118-382 45-407 (570)
53 3oja_A Leucine-rich immune mol 99.8 1.9E-20 6.4E-25 224.2 14.3 229 141-393 22-259 (487)
54 2z81_A CD282 antigen, TOLL-lik 99.8 3.5E-20 1.2E-24 225.6 15.9 160 119-279 44-209 (549)
55 3vq2_A TLR4, TOLL-like recepto 99.8 2.4E-20 8.3E-25 230.0 14.3 246 121-388 303-562 (606)
56 2z66_A Variable lymphocyte rec 99.8 7.1E-20 2.4E-24 205.6 15.9 222 93-331 29-263 (306)
57 2z62_A TOLL-like receptor 4, v 99.8 5.5E-20 1.9E-24 203.3 14.5 201 125-330 28-238 (276)
58 1ziw_A TOLL-like receptor 3; i 99.8 2.4E-19 8.1E-24 224.3 21.4 253 120-386 324-624 (680)
59 2z80_A TOLL-like receptor 2, v 99.8 6.4E-20 2.2E-24 210.4 14.5 240 93-343 53-305 (353)
60 3j0a_A TOLL-like receptor 5; m 99.8 1.3E-19 4.6E-24 231.7 18.7 137 118-255 41-186 (844)
61 1ziw_A TOLL-like receptor 3; i 99.8 3.4E-19 1.2E-23 222.8 21.6 221 117-344 41-301 (680)
62 3g06_A SSPH2 (leucine-rich rep 99.8 4.4E-19 1.5E-23 217.0 21.5 227 125-393 61-305 (622)
63 2z63_A TOLL-like receptor 4, v 99.8 2.5E-19 8.5E-24 219.1 19.3 118 219-342 346-473 (570)
64 2z81_A CD282 antigen, TOLL-lik 99.8 7.9E-20 2.7E-24 222.5 14.2 178 125-303 26-211 (549)
65 1p9a_G Platelet glycoprotein I 99.8 4.5E-19 1.5E-23 197.4 18.7 181 125-308 31-215 (290)
66 3rfs_A Internalin B, repeat mo 99.8 5.1E-19 1.7E-23 195.1 18.3 197 120-332 36-238 (272)
67 2o6q_A Variable lymphocyte rec 99.8 1E-18 3.5E-23 192.5 20.6 178 125-303 37-220 (270)
68 4glp_A Monocyte differentiatio 99.8 1.4E-19 4.7E-24 203.7 13.9 200 123-330 89-308 (310)
69 2o6q_A Variable lymphocyte rec 99.8 1.4E-18 4.9E-23 191.3 21.3 198 125-330 16-219 (270)
70 1h6u_A Internalin H; cell adhe 99.8 1.1E-18 3.8E-23 196.1 20.3 176 119-303 57-232 (308)
71 3j0a_A TOLL-like receptor 5; m 99.8 5.1E-19 1.8E-23 226.3 19.6 159 88-255 44-216 (844)
72 4g8a_A TOLL-like receptor 4; l 99.8 8.7E-19 3E-23 216.7 20.9 132 92-233 52-186 (635)
73 2z7x_B TOLL-like receptor 1, v 99.8 8.9E-19 3E-23 211.8 20.1 126 125-255 21-150 (520)
74 2z62_A TOLL-like receptor 4, v 99.8 8.2E-19 2.8E-23 193.8 17.7 201 93-303 29-239 (276)
75 3m19_A Variable lymphocyte rec 99.8 1.9E-18 6.3E-23 188.2 19.2 182 125-310 14-202 (251)
76 2xwt_C Thyrotropin receptor; s 99.8 4E-19 1.4E-23 191.9 13.1 194 125-326 31-236 (239)
77 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 3.2E-18 1.1E-22 209.0 21.3 126 125-255 52-181 (562)
78 1h6t_A Internalin B; cell adhe 99.8 1.9E-18 6.4E-23 192.5 16.1 174 121-303 42-215 (291)
79 1jl5_A Outer protein YOPM; leu 99.8 2.3E-19 7.7E-24 212.7 9.1 227 119-382 28-268 (454)
80 4glp_A Monocyte differentiatio 99.8 1.7E-18 5.7E-23 194.8 13.5 179 122-303 114-309 (310)
81 3rfs_A Internalin B, repeat mo 99.8 2.2E-18 7.6E-23 190.0 14.0 196 126-331 20-220 (272)
82 1jl5_A Outer protein YOPM; leu 99.8 1.5E-18 5E-23 205.7 12.8 215 127-382 73-288 (454)
83 4g8a_A TOLL-like receptor 4; l 99.8 6E-18 2.1E-22 209.2 18.4 132 125-257 52-187 (635)
84 3g06_A SSPH2 (leucine-rich rep 99.8 1.5E-17 5.1E-22 203.4 21.3 220 125-382 40-272 (622)
85 2xwt_C Thyrotropin receptor; s 99.7 5.3E-18 1.8E-22 183.1 14.7 181 116-299 46-237 (239)
86 1h6t_A Internalin B; cell adhe 99.7 6.6E-18 2.3E-22 188.1 15.4 188 130-332 29-216 (291)
87 3cvr_A Invasion plasmid antige 99.7 3E-17 1E-21 198.3 19.9 187 125-339 59-254 (571)
88 1m9s_A Internalin B; cell inva 99.7 1.2E-17 4.1E-22 204.0 15.4 174 121-303 39-212 (605)
89 3m19_A Variable lymphocyte rec 99.7 3.9E-17 1.3E-21 177.7 17.6 154 125-279 35-192 (251)
90 1m9s_A Internalin B; cell inva 99.7 1.4E-17 4.8E-22 203.4 12.6 191 127-332 23-213 (605)
91 2ca6_A RAN GTPase-activating p 99.7 2E-18 6.7E-23 200.6 3.8 212 119-330 26-288 (386)
92 1xeu_A Internalin C; cellular 99.7 2.1E-17 7.1E-22 181.2 10.0 170 124-303 18-187 (263)
93 3cvr_A Invasion plasmid antige 99.7 8.7E-17 3E-21 194.3 16.2 191 150-369 60-252 (571)
94 3goz_A Leucine-rich repeat-con 99.7 6.6E-18 2.3E-22 194.3 5.5 239 119-382 16-295 (362)
95 1z7x_W Ribonuclease inhibitor; 99.7 1.2E-17 4E-22 198.6 6.8 175 126-301 86-297 (461)
96 2ca6_A RAN GTPase-activating p 99.7 4.9E-18 1.7E-22 197.2 3.2 230 141-383 24-315 (386)
97 1xeu_A Internalin C; cellular 99.7 3E-17 1E-21 179.9 8.6 172 147-332 17-188 (263)
98 4ezg_A Putative uncharacterize 99.7 2E-16 6.9E-21 165.3 13.4 128 172-301 64-194 (197)
99 3e6j_A Variable lymphocyte rec 99.7 1E-15 3.5E-20 164.1 16.7 149 127-279 21-172 (229)
100 1z7x_W Ribonuclease inhibitor; 99.7 6.2E-18 2.1E-22 201.0 -0.8 251 119-382 50-352 (461)
101 2xot_A Amphoterin-induced prot 99.7 3.6E-16 1.2E-20 179.7 13.5 177 128-308 21-209 (361)
102 2o6s_A Variable lymphocyte rec 99.6 6.7E-16 2.3E-20 162.8 14.3 145 129-277 11-159 (208)
103 2ast_B S-phase kinase-associat 99.6 3E-17 1E-21 186.5 4.1 197 125-326 70-282 (336)
104 4ezg_A Putative uncharacterize 99.6 4.2E-16 1.5E-20 162.9 12.5 152 171-330 41-195 (197)
105 2o6s_A Variable lymphocyte rec 99.6 9.6E-16 3.3E-20 161.6 13.4 157 124-287 27-188 (208)
106 2ast_B S-phase kinase-associat 99.6 1E-16 3.5E-21 182.1 5.8 168 127-299 49-233 (336)
107 2v9t_B SLIT homolog 2 protein 99.6 2E-15 7E-20 160.7 15.1 136 174-309 32-173 (220)
108 2v70_A SLIT-2, SLIT homolog 2 99.6 2E-15 6.8E-20 160.8 14.9 133 176-308 34-173 (220)
109 2v9t_B SLIT homolog 2 protein 99.6 3.2E-15 1.1E-19 159.1 15.9 148 128-279 14-165 (220)
110 4ay9_X Follicle-stimulating ho 99.6 1.1E-15 3.9E-20 174.7 13.1 180 125-304 30-218 (350)
111 1dce_A Protein (RAB geranylger 99.6 6.8E-18 2.3E-22 204.9 -7.3 197 121-322 345-566 (567)
112 3goz_A Leucine-rich repeat-con 99.6 1.8E-16 6.2E-21 182.3 4.7 234 92-331 22-299 (362)
113 3e6j_A Variable lymphocyte rec 99.6 6.2E-15 2.1E-19 157.9 15.4 135 124-259 39-175 (229)
114 2v70_A SLIT-2, SLIT homolog 2 99.6 6.1E-15 2.1E-19 156.9 15.2 148 128-279 14-166 (220)
115 2xot_A Amphoterin-induced prot 99.6 2.1E-15 7.2E-20 173.3 12.3 154 125-279 39-202 (361)
116 4ay9_X Follicle-stimulating ho 99.6 9.5E-15 3.3E-19 167.1 16.1 221 92-329 30-259 (350)
117 2ell_A Acidic leucine-rich nuc 99.6 6.6E-15 2.3E-19 149.5 11.5 134 123-259 22-163 (168)
118 2ell_A Acidic leucine-rich nuc 99.6 9.2E-15 3.2E-19 148.4 11.0 134 148-282 23-163 (168)
119 4b8c_D Glucose-repressible alc 99.5 1.5E-15 5.2E-20 190.0 4.9 176 124-302 172-355 (727)
120 4b8c_D Glucose-repressible alc 99.5 2.8E-15 9.5E-20 187.6 3.6 116 142-259 217-332 (727)
121 1dce_A Protein (RAB geranylger 99.5 7.8E-16 2.7E-20 186.8 -1.6 173 119-295 366-567 (567)
122 2wfh_A SLIT homolog 2 protein 99.5 9.5E-14 3.2E-18 144.5 13.7 131 177-309 13-147 (193)
123 2je0_A Acidic leucine-rich nuc 99.5 2.3E-14 7.8E-19 142.4 8.4 124 125-251 17-148 (149)
124 2je0_A Acidic leucine-rich nuc 99.5 3.5E-14 1.2E-18 141.0 9.3 126 148-274 16-148 (149)
125 1w8a_A SLIT protein; signaling 99.5 1.2E-13 4.1E-18 143.6 13.2 130 177-308 11-146 (192)
126 1a9n_A U2A', U2A'; complex (nu 99.5 8.5E-14 2.9E-18 142.5 8.9 133 120-257 14-154 (176)
127 1a9n_A U2A', U2A'; complex (nu 99.5 7.1E-14 2.4E-18 143.1 8.1 109 145-256 15-126 (176)
128 3ogk_B Coronatine-insensitive 99.4 4.6E-14 1.6E-18 173.1 5.6 174 120-296 187-411 (592)
129 1ds9_A Outer arm dynein; leuci 99.4 6.9E-16 2.4E-20 161.4 -9.2 133 121-257 14-154 (198)
130 3ogk_B Coronatine-insensitive 99.4 1.8E-14 6.2E-19 176.8 0.2 153 121-274 160-326 (592)
131 1w8a_A SLIT protein; signaling 99.4 1.1E-12 3.6E-17 136.4 13.5 127 128-258 11-141 (192)
132 1ds9_A Outer arm dynein; leuci 99.4 1.2E-15 4.1E-20 159.6 -9.1 132 145-279 14-153 (198)
133 2o6r_A Variable lymphocyte rec 99.4 3.1E-12 1.1E-16 130.9 14.4 126 176-303 9-139 (177)
134 2wfh_A SLIT homolog 2 protein 99.4 2.5E-12 8.5E-17 133.7 13.8 105 175-279 32-139 (193)
135 2o6r_A Variable lymphocyte rec 99.4 4.3E-12 1.5E-16 129.8 14.9 129 127-259 9-140 (177)
136 3sb4_A Hypothetical leucine ri 99.3 1.5E-11 5E-16 139.2 12.1 191 124-322 48-327 (329)
137 2p1m_B Transport inhibitor res 99.2 1.9E-12 6.3E-17 158.8 3.5 198 123-324 154-405 (594)
138 4db6_A Armadillo repeat protei 99.2 2.5E-11 8.7E-16 127.4 11.5 176 347-522 33-209 (210)
139 3un9_A NLR family member X1; l 99.2 5.8E-13 2E-17 153.1 -1.3 132 125-256 72-224 (372)
140 3g39_A Variable lymphocyte rec 99.2 3.4E-11 1.2E-15 122.3 11.6 103 177-303 12-117 (170)
141 2r9u_A Variable lymphocyte rec 99.2 3.8E-11 1.3E-15 122.5 11.8 100 177-278 15-117 (174)
142 2p1m_B Transport inhibitor res 99.2 3.4E-13 1.2E-17 165.4 -5.2 133 121-253 101-245 (594)
143 2r9u_A Variable lymphocyte rec 99.2 7.5E-11 2.6E-15 120.3 12.7 103 128-234 15-119 (174)
144 4db6_A Armadillo repeat protei 99.2 6.1E-11 2.1E-15 124.5 12.0 160 368-527 12-173 (210)
145 1xqr_A HSPBP1 protein; armadil 99.2 4.1E-11 1.4E-15 132.5 10.6 158 366-523 79-239 (296)
146 3g39_A Variable lymphocyte rec 99.2 1.3E-10 4.3E-15 118.1 12.5 102 128-233 12-115 (170)
147 3sb4_A Hypothetical leucine ri 99.1 2.4E-11 8.2E-16 137.5 6.5 211 124-343 24-325 (329)
148 3tpo_A Importin subunit alpha- 99.1 1.2E-10 4.2E-15 140.6 12.4 176 347-522 230-406 (529)
149 4db8_A Armadillo-repeat protei 99.1 1E-10 3.5E-15 126.5 9.6 156 367-522 95-251 (252)
150 3tpo_A Importin subunit alpha- 99.1 1.5E-10 5.1E-15 139.9 11.9 178 346-523 140-365 (529)
151 3ul1_B Importin subunit alpha- 99.1 1.5E-10 5E-15 139.2 10.6 179 345-523 120-346 (510)
152 3nmw_A APC variant protein; AR 99.1 2E-10 6.7E-15 130.5 10.8 185 346-530 104-301 (354)
153 3ul1_B Importin subunit alpha- 99.1 1.9E-10 6.6E-15 138.1 10.7 176 347-522 211-387 (510)
154 3un9_A NLR family member X1; l 99.1 1.1E-11 3.7E-16 142.5 -0.8 154 148-302 71-253 (372)
155 4db8_A Armadillo-repeat protei 99.1 5.4E-10 1.8E-14 120.8 12.4 157 367-523 53-210 (252)
156 4hxt_A De novo protein OR329; 99.1 4.7E-10 1.6E-14 120.8 11.5 156 367-522 43-199 (252)
157 3nmz_A APC variant protein; pr 99.0 2.1E-10 7E-15 134.3 8.8 185 346-530 220-417 (458)
158 4hxt_A De novo protein OR329; 99.0 4.7E-10 1.6E-14 120.8 10.3 157 367-523 85-242 (252)
159 3now_A UNC-45 protein, SD10334 99.0 7.7E-10 2.6E-14 136.9 11.6 165 367-531 494-704 (810)
160 3nmw_A APC variant protein; AR 99.0 5.5E-10 1.9E-14 126.8 8.9 179 346-524 147-336 (354)
161 1xm9_A Plakophilin 1; armadill 99.0 1.4E-09 4.8E-14 128.6 11.4 161 369-531 3-181 (457)
162 4fdw_A Leucine rich hypothetic 98.9 5.5E-09 1.9E-13 121.1 15.3 192 118-323 129-330 (401)
163 2ifg_A High affinity nerve gro 98.9 2.1E-09 7.3E-14 122.2 11.6 106 202-308 13-123 (347)
164 3tt9_A Plakophilin-2; cell adh 98.9 2.5E-09 8.4E-14 113.3 10.9 161 369-531 9-190 (233)
165 1xqr_A HSPBP1 protein; armadil 98.9 2.4E-09 8.2E-14 118.3 10.8 140 384-523 56-197 (296)
166 4fdw_A Leucine rich hypothetic 98.9 6.9E-09 2.4E-13 120.3 14.9 202 116-332 149-361 (401)
167 2ifg_A High affinity nerve gro 98.9 2.5E-09 8.6E-14 121.6 10.9 100 178-279 12-116 (347)
168 3nmz_A APC variant protein; pr 98.9 1.4E-09 4.7E-14 127.4 7.9 178 346-523 263-451 (458)
169 3now_A UNC-45 protein, SD10334 98.9 1.7E-09 6E-14 133.7 8.0 185 346-530 556-746 (810)
170 4b8j_A Importin subunit alpha- 98.9 8.1E-09 2.8E-13 124.6 13.1 176 347-523 224-401 (528)
171 2jdq_A Importin alpha-1 subuni 98.8 2E-08 6.9E-13 118.0 13.5 177 347-523 171-348 (450)
172 3l6x_A Catenin delta-1; cateni 98.8 1.6E-08 5.5E-13 121.1 11.7 162 368-531 48-231 (584)
173 1wa5_B Importin alpha subunit; 98.8 1.7E-08 5.8E-13 121.8 12.0 177 347-523 236-413 (530)
174 3tt9_A Plakophilin-2; cell adh 98.7 1.9E-08 6.4E-13 106.5 9.5 120 411-530 10-132 (233)
175 3l6x_A Catenin delta-1; cateni 98.7 2.5E-08 8.6E-13 119.4 10.6 161 371-533 311-487 (584)
176 4b8j_A Importin subunit alpha- 98.7 1.9E-08 6.6E-13 121.2 8.6 176 347-522 181-358 (528)
177 1wa5_B Importin alpha subunit; 98.7 4.8E-08 1.6E-12 117.9 11.1 155 368-522 215-370 (530)
178 2ra8_A Uncharacterized protein 98.6 9.9E-09 3.4E-13 116.9 4.1 62 241-302 250-321 (362)
179 2ra8_A Uncharacterized protein 98.6 2.8E-08 9.5E-13 113.2 7.6 134 193-330 168-321 (362)
180 1xm9_A Plakophilin 1; armadill 98.6 7.7E-08 2.6E-12 113.7 9.9 174 347-523 23-221 (457)
181 2jdq_A Importin alpha-1 subuni 98.6 6.4E-08 2.2E-12 113.7 8.8 158 368-525 234-393 (450)
182 1io0_A Tropomodulin; LRR prote 98.5 4.8E-08 1.6E-12 100.4 3.6 13 288-300 151-163 (185)
183 1io0_A Tropomodulin; LRR prote 98.4 6.6E-08 2.3E-12 99.4 3.0 42 119-160 30-76 (185)
184 2z6h_A Catenin beta-1, beta-ca 98.4 4.5E-07 1.6E-11 112.1 10.5 164 367-531 13-179 (644)
185 1jdh_A Beta-catenin; beta-cate 98.4 4.5E-07 1.5E-11 108.9 10.0 164 367-531 16-182 (529)
186 1jdh_A Beta-catenin; beta-cate 98.4 3.2E-07 1.1E-11 110.2 7.6 151 368-519 266-423 (529)
187 2z6g_A B-catenin; FULL-length, 98.3 7.2E-07 2.5E-11 112.5 9.6 164 367-531 149-315 (780)
188 2z6h_A Catenin beta-1, beta-ca 98.2 2.1E-06 7.3E-11 106.0 10.4 164 368-531 56-221 (644)
189 3opb_A SWI5-dependent HO expre 98.2 2.1E-06 7.2E-11 104.4 8.4 159 366-526 455-639 (778)
190 2z6g_A B-catenin; FULL-length, 98.1 4.1E-06 1.4E-10 105.6 8.6 155 368-524 488-665 (780)
191 3rw6_A Nuclear RNA export fact 98.0 8.1E-07 2.8E-11 96.1 -0.8 102 145-249 137-257 (267)
192 3rw6_A Nuclear RNA export fact 97.9 1.4E-06 5E-11 94.1 0.7 61 195-256 168-233 (267)
193 4fs7_A Uncharacterized protein 97.9 5.5E-05 1.9E-09 87.2 13.4 39 144-184 157-195 (394)
194 3opb_A SWI5-dependent HO expre 97.8 2.4E-05 8.1E-10 95.3 9.0 185 346-531 477-693 (778)
195 4gt6_A Cell surface protein; l 97.8 0.00015 5.2E-09 83.6 13.9 85 119-206 81-169 (394)
196 4fs7_A Uncharacterized protein 97.7 0.00022 7.5E-09 82.2 13.2 172 117-296 154-328 (394)
197 4gt6_A Cell surface protein; l 97.6 0.00097 3.3E-08 76.7 17.7 78 217-296 262-342 (394)
198 1pgv_A TMD-1, tropomodulin TMD 97.5 4.6E-05 1.6E-09 78.0 4.0 41 193-233 66-111 (197)
199 3e4g_A ATP synthase subunit S, 97.4 8.6E-05 2.9E-09 74.6 4.6 78 221-299 62-150 (176)
200 1pgv_A TMD-1, tropomodulin TMD 97.4 7.2E-05 2.5E-09 76.5 3.5 42 119-160 35-81 (197)
201 3e4g_A ATP synthase subunit S, 97.3 9.6E-05 3.3E-09 74.2 2.7 35 126-160 62-96 (176)
202 4h09_A Hypothetical leucine ri 97.1 0.0026 8.8E-08 72.6 12.5 177 116-298 149-343 (379)
203 4h09_A Hypothetical leucine ri 97.0 0.0046 1.6E-07 70.5 13.8 197 119-325 130-342 (379)
204 1te4_A Conserved protein MTH18 96.9 0.0018 6E-08 61.8 7.4 119 369-520 13-131 (131)
205 3ltm_A Alpha-REP4; protein eng 96.7 0.008 2.7E-07 62.1 11.2 123 370-524 52-174 (211)
206 3ltm_A Alpha-REP4; protein eng 96.6 0.0087 3E-07 61.8 11.1 123 369-523 20-142 (211)
207 3ltj_A Alpharep-4; protein eng 96.6 0.01 3.5E-07 60.7 11.2 123 370-524 47-169 (201)
208 3ltj_A Alpharep-4; protein eng 96.5 0.01 3.5E-07 60.7 10.6 125 368-524 14-138 (201)
209 3rfe_A Platelet glycoprotein I 95.8 0.013 4.4E-07 55.8 6.6 54 178-233 12-68 (130)
210 4gmo_A Putative uncharacterize 95.6 0.01 3.4E-07 73.4 6.4 161 370-531 37-224 (684)
211 3rfe_A Platelet glycoprotein I 95.4 0.018 6.2E-07 54.8 5.9 42 267-308 32-75 (130)
212 1oyz_A Hypothetical protein YI 95.3 0.076 2.6E-06 57.3 11.2 122 379-524 102-223 (280)
213 1oyz_A Hypothetical protein YI 95.0 0.08 2.7E-06 57.1 10.3 132 369-521 55-187 (280)
214 2qk2_A LP04448P; mini spindles 94.9 0.036 1.2E-06 58.6 7.0 147 370-523 58-206 (242)
215 1cjy_A CPLA2, protein (cytosol 94.6 0.024 8.4E-07 69.4 5.5 72 539-613 188-261 (749)
216 4gmo_A Putative uncharacterize 93.9 0.018 6.2E-07 71.1 2.3 173 347-521 55-257 (684)
217 3grl_A General vesicular trans 93.5 0.098 3.4E-06 62.2 7.4 165 368-533 166-354 (651)
218 3grl_A General vesicular trans 93.4 0.12 4E-06 61.5 7.9 127 405-531 118-251 (651)
219 2qk1_A Protein STU2; STU2P, XM 92.7 0.078 2.7E-06 56.5 4.6 151 371-521 63-219 (249)
220 1b3u_A Protein (protein phosph 92.4 0.35 1.2E-05 57.8 10.4 143 371-521 444-586 (588)
221 4fdd_A Transportin-1; heat rep 92.3 0.084 2.9E-06 66.9 5.0 151 370-521 361-511 (852)
222 1te4_A Conserved protein MTH18 91.9 0.17 5.7E-06 47.8 5.3 88 370-478 44-131 (131)
223 4fdd_A Transportin-1; heat rep 91.8 0.23 8E-06 62.8 8.2 136 384-523 337-472 (852)
224 1ibr_B P95, importin beta-1 su 91.6 0.29 9.9E-06 56.5 8.0 73 450-523 365-438 (462)
225 1b3u_A Protein (protein phosph 90.5 0.27 9.4E-06 58.8 6.6 144 371-522 167-310 (588)
226 3dad_A FH1/FH2 domain-containi 89.8 1.6 5.5E-05 47.6 11.1 137 379-515 129-279 (339)
227 2vgl_B AP-2 complex subunit be 89.7 0.53 1.8E-05 56.8 8.2 141 371-521 89-230 (591)
228 2vgl_B AP-2 complex subunit be 89.6 0.36 1.2E-05 58.3 6.6 140 370-523 51-190 (591)
229 3b2a_A TON_1937, putative unch 87.3 0.81 2.8E-05 47.1 6.2 152 369-523 34-219 (265)
230 1qgr_A Protein (importin beta 85.4 1.3 4.5E-05 55.8 8.4 138 381-523 341-480 (876)
231 1ibr_B P95, importin beta-1 su 85.1 0.88 3E-05 52.3 6.1 157 368-524 128-290 (462)
232 3b2a_A TON_1937, putative unch 82.7 5.6 0.00019 41.0 9.8 109 410-520 34-142 (265)
233 1w63_A Adapter-related protein 82.3 5.5 0.00019 48.1 11.8 149 369-523 180-380 (618)
234 2qk2_A LP04448P; mini spindles 80.3 2 6.7E-05 45.0 6.0 109 413-523 19-128 (242)
235 2bpt_A Importin beta-1 subunit 79.7 2.2 7.6E-05 53.5 7.3 143 379-523 380-530 (861)
236 1w63_A Adapter-related protein 77.5 4.8 0.00016 48.7 9.0 134 375-524 77-210 (618)
237 1u6g_C TIP120 protein, CAND1; 77.3 3.2 0.00011 54.7 8.0 147 373-523 53-205 (1230)
238 1qgr_A Protein (importin beta 75.9 3.4 0.00012 51.9 7.4 148 373-521 371-536 (876)
239 2bpt_A Importin beta-1 subunit 70.5 10 0.00034 47.4 9.8 135 383-522 346-482 (861)
240 2qk1_A Protein STU2; STU2P, XM 67.4 4.5 0.00015 42.6 4.7 145 379-523 27-176 (249)
241 2vgl_A Adaptor protein complex 60.5 30 0.001 41.5 10.9 140 370-523 76-217 (621)
242 1ho8_A Vacuolar ATP synthase s 60.4 4.8 0.00016 46.1 3.5 70 451-520 395-474 (480)
243 2qs9_A Retinoblastoma-binding 58.4 10 0.00035 37.3 5.2 52 539-593 36-87 (194)
244 2db0_A 253AA long hypothetical 58.0 29 0.001 34.3 7.9 127 381-522 120-246 (253)
245 4ady_A RPN2, 26S proteasome re 57.4 29 0.001 43.4 10.0 65 452-523 612-677 (963)
246 4fle_A Esterase; structural ge 55.6 16 0.00054 36.2 6.2 49 538-592 32-81 (202)
247 3dad_A FH1/FH2 domain-containi 54.5 36 0.0012 37.0 8.9 107 415-521 124-230 (339)
248 1r88_A MPT51/MPB51 antigen; AL 51.6 23 0.00079 37.5 7.1 54 538-593 65-132 (280)
249 1upk_A MO25 protein; transfera 50.8 96 0.0033 33.7 11.4 133 391-523 146-284 (341)
250 2vgl_A Adaptor protein complex 47.9 46 0.0016 40.0 9.6 99 413-523 78-178 (621)
251 2wj6_A 1H-3-hydroxy-4-oxoquina 46.7 27 0.00093 36.7 6.6 33 556-592 80-112 (276)
252 1dqz_A 85C, protein (antigen 8 46.5 30 0.001 36.4 6.9 18 576-593 117-134 (280)
253 1u6g_C TIP120 protein, CAND1; 46.3 25 0.00087 46.0 7.5 105 413-521 10-114 (1230)
254 1tht_A Thioesterase; 2.10A {Vi 44.1 24 0.00083 37.9 5.8 18 576-593 109-126 (305)
255 3tjz_B Coatomer subunit gamma; 41.6 73 0.0025 35.2 9.1 135 371-522 142-279 (355)
256 4ffb_C Protein STU2; tubulin f 40.3 72 0.0025 33.5 8.7 141 374-521 61-211 (278)
257 1vkh_A Putative serine hydrola 39.0 47 0.0016 34.4 6.9 53 537-593 75-134 (273)
258 3afi_E Haloalkane dehalogenase 38.1 47 0.0016 35.5 6.9 50 540-593 56-115 (316)
259 1hkh_A Gamma lactamase; hydrol 37.5 49 0.0017 34.2 6.8 51 538-592 49-109 (279)
260 1zoi_A Esterase; alpha/beta hy 37.5 51 0.0018 34.0 7.0 51 538-592 48-108 (276)
261 3v48_A Aminohydrolase, putativ 36.0 53 0.0018 34.0 6.7 33 556-592 69-101 (268)
262 4ady_A RPN2, 26S proteasome re 35.2 3.4E+02 0.012 33.9 14.4 52 462-521 589-640 (963)
263 2pbl_A Putative esterase/lipas 35.0 44 0.0015 34.3 5.8 51 538-593 92-149 (262)
264 2vat_A Acetyl-COA--deacetylcep 34.8 51 0.0018 37.3 6.9 35 556-593 186-220 (444)
265 1a8q_A Bromoperoxidase A1; hal 34.8 55 0.0019 33.6 6.7 32 556-591 73-104 (274)
266 3i1i_A Homoserine O-acetyltran 34.8 60 0.0021 35.0 7.3 35 555-592 132-166 (377)
267 1sfr_A Antigen 85-A; alpha/bet 33.7 60 0.0021 34.6 6.8 18 576-593 122-139 (304)
268 1azw_A Proline iminopeptidase; 33.6 60 0.002 34.2 6.8 52 538-593 59-122 (313)
269 2q0x_A Protein DUF1749, unchar 33.5 53 0.0018 35.7 6.4 17 576-592 111-127 (335)
270 3tjz_B Coatomer subunit gamma; 33.5 1.3E+02 0.0045 33.1 9.5 133 374-523 74-206 (355)
271 1q0r_A RDMC, aclacinomycin met 33.5 64 0.0022 33.8 7.0 31 558-592 83-113 (298)
272 2wfl_A Polyneuridine-aldehyde 33.4 51 0.0018 34.0 6.1 17 576-592 82-98 (264)
273 1a8s_A Chloroperoxidase F; hal 33.3 64 0.0022 33.1 6.8 50 538-591 45-104 (273)
274 1iup_A META-cleavage product h 33.2 67 0.0023 33.5 7.1 32 557-592 83-114 (282)
275 1xkl_A SABP2, salicylic acid-b 32.5 49 0.0017 34.5 5.8 17 576-592 76-92 (273)
276 2xua_A PCAD, 3-oxoadipate ENOL 32.2 70 0.0024 32.9 6.9 33 556-592 79-111 (266)
277 3om8_A Probable hydrolase; str 32.0 69 0.0023 33.1 6.8 33 556-592 80-112 (266)
278 1a88_A Chloroperoxidase L; hal 31.7 68 0.0023 32.9 6.7 31 557-591 76-106 (275)
279 2xt0_A Haloalkane dehalogenase 31.5 38 0.0013 35.9 4.7 52 538-593 72-135 (297)
280 1brt_A Bromoperoxidase A2; hal 31.5 65 0.0022 33.3 6.6 33 556-592 77-109 (277)
281 2cjp_A Epoxide hydrolase; HET: 31.2 59 0.002 34.6 6.3 35 556-592 89-123 (328)
282 1wom_A RSBQ, sigma factor SIGB 31.0 64 0.0022 33.3 6.4 17 576-592 93-109 (271)
283 1mtz_A Proline iminopeptidase; 30.5 56 0.0019 34.0 5.8 51 538-592 54-116 (293)
284 3fcx_A FGH, esterase D, S-form 30.0 35 0.0012 35.3 4.1 18 576-593 144-161 (282)
285 1z6t_A APAF-1, apoptotic prote 29.9 27 0.00093 41.5 3.5 23 968-990 145-167 (591)
286 3g02_A Epoxide hydrolase; alph 29.9 79 0.0027 35.6 7.2 54 537-593 140-205 (408)
287 1b6g_A Haloalkane dehalogenase 29.6 38 0.0013 36.2 4.3 51 539-593 74-136 (310)
288 3icv_A Lipase B, CALB; circula 29.4 70 0.0024 34.7 6.3 49 539-591 94-149 (316)
289 1gpl_A RP2 lipase; serine este 28.8 47 0.0016 37.8 5.1 53 539-593 100-166 (432)
290 1ufo_A Hypothetical protein TT 28.7 60 0.0021 32.1 5.5 18 576-593 108-125 (238)
291 2b61_A Homoserine O-acetyltran 28.2 81 0.0028 34.1 6.9 34 556-592 140-173 (377)
292 2of3_A ZYG-9; multifunctional 27.5 3E+02 0.01 28.8 10.6 65 452-523 168-237 (266)
293 3ibt_A 1H-3-hydroxy-4-oxoquino 27.4 94 0.0032 31.3 6.9 33 556-592 74-106 (264)
294 3ezo_A Malonyl COA-acyl carrie 27.4 1E+02 0.0035 33.3 7.3 50 554-608 75-124 (318)
295 1pja_A Palmitoyl-protein thioe 27.2 77 0.0026 33.1 6.3 18 576-593 106-123 (302)
296 3fsg_A Alpha/beta superfamily 27.1 97 0.0033 31.2 6.9 51 538-592 48-108 (272)
297 2fx5_A Lipase; alpha-beta hydr 27.0 67 0.0023 33.0 5.6 54 538-591 75-136 (258)
298 3sty_A Methylketone synthase 1 27.0 74 0.0025 32.2 5.9 17 576-592 84-100 (267)
299 3c2g_A SYS-1 protein; beta-cat 27.0 2.3E+02 0.008 30.7 9.4 183 387-576 262-454 (619)
300 3dqz_A Alpha-hydroxynitrIle ly 27.0 74 0.0025 32.0 5.9 18 576-593 76-93 (258)
301 3e0x_A Lipase-esterase related 26.9 84 0.0029 31.0 6.3 18 576-593 87-104 (245)
302 1hpl_A Lipase; hydrolase(carbo 26.8 57 0.002 37.3 5.3 52 539-592 99-164 (449)
303 3qit_A CURM TE, polyketide syn 26.8 77 0.0026 32.1 6.0 50 539-592 53-114 (286)
304 3tqe_A Malonyl-COA-[acyl-carri 26.3 1.1E+02 0.0038 33.0 7.3 51 553-608 72-122 (316)
305 2lz0_A Uncharacterized protein 26.2 53 0.0018 28.9 3.9 44 115-159 10-53 (100)
306 3k89_A Malonyl COA-ACP transac 26.2 85 0.0029 33.9 6.4 51 553-608 70-120 (314)
307 1uxo_A YDEN protein; hydrolase 26.1 59 0.002 31.4 4.7 54 538-593 32-85 (192)
308 1zi8_A Carboxymethylenebutenol 25.8 42 0.0014 33.5 3.6 18 576-593 118-135 (236)
309 1rp1_A Pancreatic lipase relat 25.7 62 0.0021 37.1 5.3 54 538-593 99-166 (450)
310 1ho8_A Vacuolar ATP synthase s 25.7 72 0.0025 36.5 5.7 59 422-480 418-476 (480)
311 3u1t_A DMMA haloalkane dehalog 25.5 98 0.0034 31.9 6.7 51 538-592 55-115 (309)
312 3ls2_A S-formylglutathione hyd 25.5 61 0.0021 33.6 5.0 33 557-592 126-158 (280)
313 2r11_A Carboxylesterase NP; 26 25.3 88 0.003 32.8 6.3 50 539-592 93-153 (306)
314 2iw3_A Elongation factor 3A; a 24.7 1.3E+02 0.0043 38.0 8.2 131 386-521 70-203 (986)
315 3fob_A Bromoperoxidase; struct 24.4 1.1E+02 0.0037 31.6 6.7 32 556-591 81-112 (281)
316 3ia2_A Arylesterase; alpha-bet 24.3 1.1E+02 0.0039 31.1 6.8 50 538-591 45-104 (271)
317 2a5y_B CED-4; apoptosis; HET: 24.3 24 0.00083 41.6 1.6 22 969-990 151-172 (549)
318 3qat_A Malonyl COA-acyl carrie 24.2 83 0.0029 34.0 5.8 52 554-607 72-123 (318)
319 2lz0_A Uncharacterized protein 23.7 77 0.0026 27.8 4.4 45 137-183 8-52 (100)
320 1jfr_A Lipase; serine hydrolas 23.7 1.2E+02 0.004 31.0 6.8 53 538-592 80-142 (262)
321 3dkr_A Esterase D; alpha beta 23.2 68 0.0023 31.9 4.7 17 576-592 96-112 (251)
322 3qyj_A ALR0039 protein; alpha/ 22.7 1.3E+02 0.0045 31.4 7.0 17 576-592 99-115 (291)
323 3im8_A Malonyl acyl carrier pr 22.1 1.3E+02 0.0046 32.2 6.9 49 554-608 68-116 (307)
324 3bdv_A Uncharacterized protein 22.1 74 0.0025 30.7 4.5 18 576-593 77-94 (191)
325 4b6g_A Putative esterase; hydr 22.0 72 0.0024 33.1 4.7 32 558-592 133-164 (283)
326 2fuk_A XC6422 protein; A/B hyd 21.9 1.3E+02 0.0044 29.4 6.4 51 538-592 68-130 (220)
327 1tca_A Lipase; hydrolase(carbo 21.4 1.3E+02 0.0043 32.5 6.5 50 538-591 59-115 (317)
328 2cuy_A Malonyl COA-[acyl carri 21.2 1.6E+02 0.0055 31.5 7.3 50 554-608 66-115 (305)
329 3c8d_A Enterochelin esterase; 21.2 1.4E+02 0.0046 33.5 7.0 55 539-593 229-296 (403)
330 3ptw_A Malonyl COA-acyl carrie 21.2 1.4E+02 0.0048 32.5 6.9 49 554-608 69-117 (336)
331 1k8q_A Triacylglycerol lipase, 21.1 1.2E+02 0.0041 32.5 6.5 31 558-592 134-164 (377)
332 2uz0_A Esterase, tributyrin es 21.1 1.4E+02 0.0048 30.2 6.7 17 576-592 120-136 (263)
333 3fla_A RIFR; alpha-beta hydrol 21.0 1.1E+02 0.0039 30.7 5.9 18 576-593 89-106 (267)
334 3e4d_A Esterase D; S-formylglu 20.8 89 0.0031 32.1 5.1 34 557-592 126-159 (278)
335 1mla_A Malonyl-coenzyme A acyl 20.8 1.6E+02 0.0056 31.5 7.3 48 554-606 69-116 (309)
336 3vis_A Esterase; alpha/beta-hy 20.6 81 0.0028 33.5 4.8 55 537-592 121-186 (306)
337 3d0k_A Putative poly(3-hydroxy 20.6 1.2E+02 0.0039 32.0 6.0 35 556-592 125-159 (304)
338 2pl5_A Homoserine O-acetyltran 20.5 1.5E+02 0.0052 31.6 7.1 33 557-592 132-164 (366)
339 1ehy_A Protein (soluble epoxid 20.2 83 0.0028 32.9 4.7 33 556-592 86-118 (294)
340 1jjf_A Xylanase Z, endo-1,4-be 20.0 1.3E+02 0.0043 30.9 6.1 56 538-593 99-165 (268)
No 1
>1oxw_A Patatin; alpha/beta class fold with approximately three layers; 2.20A {Solanum cardiophyllum} SCOP: c.19.1.3
Probab=100.00 E-value=2.7e-47 Score=436.39 Aligned_cols=303 Identities=20% Similarity=0.297 Sum_probs=248.4
Q ss_pred CCCCCceEEEecCCCchHHHHHHHHHHHHHhc----C---CCCCcccceEEecchHHHHHHHHhcCC------CCHHHHH
Q 001385 535 VPKQGLRILSMDGGGMKGLATVQILKEIEKGT----G---KRIHELFDLVCGTSTGGMLAIALAVKL------MTLDQCE 601 (1088)
Q Consensus 535 ~~~~~~riLsLdGGG~RG~~~~~vL~~Le~~~----~---~~i~~~FDli~GTStG~iiA~~l~~~~------~s~~e~~ 601 (1088)
.++++.++|||||||+||+++++||++||+.+ | .+++++||+|+|||||||+|++++.+. |++++|.
T Consensus 11 ~~~~~~~~LsLdGGG~RG~~~~gvL~~Lee~l~~~~G~~~~~i~~~fD~I~GTS~Gaiiaa~la~g~~~~r~~~s~~el~ 90 (373)
T 1oxw_A 11 QLGEMVTVLSIDGGGIRGIIPATILEFLEGQLQEMDNNADARLADYFDVIGGTSTGGLLTAMISTPNENNRPFAAAKEIV 90 (373)
T ss_dssp -CCSCEEEEEECCCGGGGHHHHHHHHHHHHHHHHHTTCTTCCHHHHCSEEEECTHHHHHHHHHHSBCTTSSBSSCGGGHH
T ss_pred CCCCCeEEEEEcCCcHHHHHHHHHHHHHHHHHHhhcCCccCCchhhCCEEEEECHHHHHHHHHhcCCccCCCcCCHHHHH
Confidence 45678999999999999999999999999985 3 578899999999999999999999763 6899999
Q ss_pred HHHHHhhccccCCCCCCCchhhhHHHHHHHHhhcccccceeEeccCCCCHHHHHHHHHHHhcCCCCCchhccccCCCCEE
Q 001385 602 EIYKNLGKLVFAEPFPKDNEAATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLIESSVKNIPKV 681 (1088)
Q Consensus 602 ~~y~~~~~~iF~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~Lk~~~~~~~g~~~~~~~~~~~~k~ 681 (1088)
++|.++++++|.... .+.+++|+.+.|+++|++.|+ +..+.+... ++
T Consensus 91 ~~~~~~~~~iF~~~~--------------------------~l~~~~~~~~~L~~~l~~~~~----~~~l~d~~~---~~ 137 (373)
T 1oxw_A 91 PFYFEHGPQIFNPSG--------------------------QILGPKYDGKYLMQVLQEKLG----ETRVHQALT---EV 137 (373)
T ss_dssp HHHHHHHHHHTCCCC--------------------------CSSSCSCCCHHHHHHHHHHHT----TCBGGGCSS---EE
T ss_pred HHHHHhhHhhcCCCC--------------------------ccccCCcCcHHHHHHHHHHHC----cCcHHHcCC---CE
Confidence 999999999997530 124678999999999999994 445555433 44
Q ss_pred EEEEeeeccCCCccEEeecCCCCCCCCCCCccccCCCCccccCCCCCCCccccccccccCCCcchHHHHHHHhcCCCCCC
Q 001385 682 FTVSTLVNVMPAQPFIFRNYQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYL 761 (1088)
Q Consensus 682 ~vv~t~~d~~~~~~~lf~ny~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dA~rASsAaP~yF 761 (1088)
+|++ +|+.++++++|++|+.+... ..++++|+|+|||||+|+||
T Consensus 138 ~i~a--td~~~~~~~~f~~~~~~~~~----------------------------------~~~~~l~~av~ASsA~P~~F 181 (373)
T 1oxw_A 138 VISS--FDIKTNKPVIFTKSNLANSP----------------------------------ELDAKMYDISYSTAAAPTYF 181 (373)
T ss_dssp EEEE--EETTTTEEEEEESSSTTTCG----------------------------------GGCCBHHHHHHHHHCCTTTS
T ss_pred EEEe--EECCCCCeEEEeCCCCCCCC----------------------------------ccCchHHHHHHHHccCCcCc
Confidence 4444 58999999999999854211 23678999999999999999
Q ss_pred CCccCC-----Cc----eeeeCcccC-CChHHHHHHHHHHhCCCC-----------CCCEEEEECCCCCCCC---C---C
Q 001385 762 DDFSDD-----VF----RWQDGAIVA-NNPTIFAIREAQLLWPDT-----------RIDCLVSIGCGSVPTK---T---R 814 (1088)
Q Consensus 762 ~p~~~~-----~~----~~vDGGl~~-NNP~~~Ai~Ea~~~~p~~-----------~i~~vvSlGTG~~~~~---~---~ 814 (1088)
+|+.++ |. .|+|||+.+ |||+..|+.||+.+|++. +..+|||||||..+.. . .
T Consensus 182 ~p~~i~~~d~~G~~~~~~~vDGGv~~~NnP~~~a~~ea~~~~~~~~~~~~~~~~~~~~~~vvSlGTG~~~~~~~~~~~~~ 261 (373)
T 1oxw_A 182 PPHYFVTNTSNGDEYEFNLVDGAVATVADPALLSISVATRLAQKDPAFASIRSLNYKKMLLLSLGTGTTSEFDKTYTAKE 261 (373)
T ss_dssp CCEEEEEECTTSCEEEEEEEEGGGGTCSSCHHHHHHHHHHHTTTCGGGTTSTTCCGGGEEEEEECCCCBCTTSSCCCHHH
T ss_pred CcEEeeccCCCCcccceeeecCcccccCChHHHHHHHHHHHhccCcccccccccccCceEEEEecCCCCCCcccccChhh
Confidence 999874 43 899999999 999999999999988753 2258999999986532 1 1
Q ss_pred CCCccccccCccchhcc--cchHHHHHHHHHHcCC-CCCCCEEEEcc-CCCCCCCCCCCCCHHHHHHHHHHHHHHHHh--
Q 001385 815 RGGWRYLDTGQVLIESA--CSVDRAEEALSTLLPM-LPEIQYYRFNP-VDERCEMELDETDPAEWLKLEAAVDEYINN-- 888 (1088)
Q Consensus 815 ~~~w~~~~~~~~li~~~--~~~d~~~~~~~~~~~~-~~~~~YfR~np-~~~~~~~~lD~~~~~~~~~l~~~t~~yl~~-- 888 (1088)
...|+++.|..+++++. .+.+.++..+..+++. ..+.+|||||| .+..+.+++|+++++++++|...+++|+++
T Consensus 262 ~~~wG~~~w~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~Y~Ri~~~~l~~~~~~lD~~~~~~l~~L~~~~~~~l~~~~ 341 (373)
T 1oxw_A 262 AATWTAVHWMLVIQKMTDAASSYMTDYYLSTAFQALDSKNNYLRVQENALTGTTTEMDDASEANMELLVQVGENLLKKPV 341 (373)
T ss_dssp HTTCCHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTTCGGGEEEECCCCBCGGGGCTTCCCHHHHHHHHHHHHHHHTSBS
T ss_pred hhhhhhHhHHHHHHHHHHHhhHHHHHHHHHHHhhccCCCCcEEEEeCCCCCCcccccccCCHHHHHHHHHHHHHHHhccc
Confidence 46899999998998843 4567788887776643 23789999998 455567899999999999999999999998
Q ss_pred -------cHHHHHHHHHHhcCCcCC
Q 001385 889 -------NSESFKNVCERLLLPFQQ 906 (1088)
Q Consensus 889 -------~~~~l~~~~~~Ll~~~~~ 906 (1088)
|.++++++|+.|.+.++.
T Consensus 342 ~~~~~~tn~~~l~~~a~~L~~e~~~ 366 (373)
T 1oxw_A 342 SEDNPETYEEALKRFAKLLSDRKKL 366 (373)
T ss_dssp SSSCCCBHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHHHhhc
Confidence 899999999999877543
No 2
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.90 E-value=3.9e-24 Score=241.30 Aligned_cols=243 Identities=15% Similarity=0.148 Sum_probs=209.1
Q ss_pred CCccEEEeeCCCCCC--CCccccccCccccEEeCcC-CCCCCCCccccccCCCCccEEEccCCCCC-CccccccCCCCCc
Q 001385 125 EPLRAVVLTKGVGSG--HLSDGIGVLTRLMRSDLST-SGPGNNMGSGFCDHWKTVTAVSLCGLGLS-ALPVDLTRLPVLE 200 (1088)
Q Consensus 125 ~~L~~L~Ls~n~i~~--~~p~~l~~l~~L~~L~Ls~-N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~ 200 (1088)
.+++.|+|++|.+.+ .+|..|.++++|++|+|++ |. +.+..|..+.++++|++|+|++|.++ .+|..+..+++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~-l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN-LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETT-EESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCc-ccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 689999999999998 8999999999999999995 77 66778888999999999999999998 8888999999999
Q ss_pred EEEccCCCCC-CCchhhcCCCCCcEEEccCCcCc-ccchhccCCC-CCCEEEeccCCCCCCc-ccccCCccccEEEecCC
Q 001385 201 KLYLDNNKLS-TLPPELGAMKNLKVLIVDNNMLV-CVPVELRECV-GLVELSLEHNRLVRPL-LDFRAMAELKILRLFGN 276 (1088)
Q Consensus 201 ~L~L~~N~l~-~lp~~l~~l~~L~~L~Ls~N~l~-~lp~~l~~l~-~L~~L~Ls~N~l~~~~-~~l~~l~~L~~L~Ls~N 276 (1088)
+|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..+.+++ +|++|++++|.+++.. ..+..++ |+.|+|++|
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N 207 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN 207 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC
Confidence 9999999999 88999999999999999999999 8999999998 9999999999998654 4677776 999999999
Q ss_pred CCC-CCc-cccCCCCCCeEEeeCCCCCCC-ccccchhhhhcCcCCccccccccchhh-hHHhhhcccCCCCcchhHHHhh
Q 001385 277 PLE-FLP-EILPLLKLRHLSLANIRIVAD-ENLRSVNVQIEMENNSYFGASRHKLSA-FFSLIFRFSSCHHPLLASALAK 352 (1088)
Q Consensus 277 ~l~-~l~-~l~~l~~L~~L~L~~N~l~~~-~~l~~l~~~~~l~~l~~l~l~~n~l~~-~~~~l~~l~~l~~l~l~~~L~~ 352 (1088)
.++ .++ .+..+++|+.|+|++|.++.. +.+. .+++|+.|++++|.+++ .|..+..+.+++.
T Consensus 208 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~------~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~--------- 272 (313)
T 1ogq_A 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVG------LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHS--------- 272 (313)
T ss_dssp EEEECCGGGCCTTSCCSEEECCSSEECCBGGGCC------CCTTCCEEECCSSCCEECCCGGGGGCTTCCE---------
T ss_pred cccCcCCHHHhcCCCCCEEECCCCceeeecCccc------ccCCCCEEECcCCcccCcCChHHhcCcCCCE---------
Confidence 998 444 578899999999999999863 3322 47899999999999985 4456667777664
Q ss_pred hhcCCCCcc--ccccccccccccceeeccCChhhhh
Q 001385 353 IMQDQENRV--VVGKDENAVRQLISMISSDNRHVVE 386 (1088)
Q Consensus 353 i~~l~~N~l--~ip~~~~~Lp~L~~L~Ls~N~~v~~ 386 (1088)
+++.+|.+ .+|.. +.+++|..|++++|+.++.
T Consensus 273 -L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 273 -LNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp -EECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred -EECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence 46788877 55554 8899999999999986543
No 3
>4akf_A VIPD; transferase; 2.90A {Legionella pneumophila}
Probab=99.90 E-value=8.9e-24 Score=241.42 Aligned_cols=205 Identities=20% Similarity=0.229 Sum_probs=144.4
Q ss_pred CCceEEEecCCCchHHHHHHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhcCCCCHHHHHHHHHHhhccccCCCCC
Q 001385 538 QGLRILSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVFAEPFP 617 (1088)
Q Consensus 538 ~~~riLsLdGGG~RG~~~~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~~~~s~~e~~~~y~~~~~~iF~~~~~ 617 (1088)
.....|+|+|||+||++++|||++|++. .+...||+|+|||+|||+|++++.+ ++.+++.++|..+...-|....+
T Consensus 35 ~~~~~LvLsGGG~RG~~hiGVL~aLee~---Gi~p~~d~IaGTSaGAIiAa~~A~G-~s~~el~~~~~~l~~~~~~d~s~ 110 (577)
T 4akf_A 35 PEHKGLVLSGGGAKGISYLGMIQALQER---GKIKNLTHVSGASAGAMTASILAVG-MDIKDIKKLIEGLDITKLLDNSG 110 (577)
T ss_dssp CCCCEEEECCCSSGGGTHHHHHHHHHHT---TCGGGCCEEEECTHHHHHHHHHHTT-CCHHHHHHHHTTCCTTTTSCSCS
T ss_pred CCceEEEECCcHHHHHHHHHHHHHHHHc---CCCccCCEEEeEcHhHHHHHHHHcC-CCHHHHHHHHHhCCHHHhhCccc
Confidence 3568999999999999999999999986 3556799999999999999999975 89999999999887444433322
Q ss_pred CC--chhhhHHHHHHHHh--------hccccc--ceeEeccCCCCHH---HHHHHHHHHhcC------------------
Q 001385 618 KD--NEAATWREKLDQIY--------KSSSQS--FRVVVHGSKHSAD---QFERLLKEMCAD------------------ 664 (1088)
Q Consensus 618 ~~--~~~~~w~~~~~~~~--------~~~~~~--~~~~~~~~~~~~~---~le~~Lk~~~~~------------------ 664 (1088)
.. .....+...+..++ .+..+. ++.....+.|+++ .+++++++.+..
T Consensus 111 l~~~~~~~ll~~~l~~~~~~~~k~~l~~v~~~~~~~l~~~~Gl~~G~~~~~le~wl~e~l~~~~~d~~~~~~~~~~~~~~ 190 (577)
T 4akf_A 111 VGFRARGDRFRNILDVIYMMQMKKHLESVQQPIPPEQQMNYGILKQKIALYEDKLSRAGIVINNVDDIINLTKSVKDLEK 190 (577)
T ss_dssp SSSCBCSHHHHHHHHHHHHHHHHHHHTTSCSCCCSTHHHHHHHHHHHHHHHHHHHHHTTCCCSSHHHHHHHHHCHHHHHH
T ss_pred ccccchhhhhhhhhhhhhhcccccccccccccccccccccCcccCCchhHHHHHHHHHHHhccccccccccccchhhhhh
Confidence 11 00011211112221 111110 1111345677888 888888887650
Q ss_pred --------------------CCCCchhccccC-----------CCCEEEEEEeeeccCCCccEEeecCCCCCCCCCCCcc
Q 001385 665 --------------------EDGDLLIESSVK-----------NIPKVFTVSTLVNVMPAQPFIFRNYQYPAGTPEVPFS 713 (1088)
Q Consensus 665 --------------------~~g~~~~~~~~~-----------~~~k~~vv~t~~d~~~~~~~lf~ny~~~~~~~~~~~~ 713 (1088)
...+.+|.+... ..+++++++| |+.++++++|++...+
T Consensus 191 L~~~~~~~p~~l~~~kg~~tg~~~iTF~dL~~l~~~~p~~~~~~~k~L~IvAT--Dv~TGk~v~F~~~~~~--------- 259 (577)
T 4akf_A 191 LDKALNSIPTELKGAKGEQLENPRLTLGDLGRLRELLPEENKHLIKNLSVVVT--NQTKHELERYSEDTTP--------- 259 (577)
T ss_dssp HHHHHHTSCSCCBCTTCCBCCCSSCBHHHHHHHHHHSCGGGGGGSCEEEEEEE--ETTTTEEEEEETTTCT---------
T ss_pred hhhhhccccchhhcccccccCCCCcCHHHHhhccccCccccccCCCeEEEEEE--ECCCCCEEEeCCCCCC---------
Confidence 011344444321 1236666665 9999999999975321
Q ss_pred ccCCCCccccCCCCCCCccccccccccCCCcchHHHHHHHhcCCCCCCCCc-cCCCceeeeCcccCCChHHHHHH
Q 001385 714 ISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLDDF-SDDVFRWQDGAIVANNPTIFAIR 787 (1088)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dA~rASsAaP~yF~p~-~~~~~~~vDGGl~~NNP~~~Ai~ 787 (1088)
+..+++|+|||||+|+||+|+ .+++..|+|||+.+|+|+..++.
T Consensus 260 ------------------------------d~~l~dAVRASsAlP~~F~PV~~IdG~~yvDGGV~~N~PV~~lfd 304 (577)
T 4akf_A 260 ------------------------------QQSIAQVVQWSGAHPVLFVPGRNAKGEYIADGGILDNMPEIEGLD 304 (577)
T ss_dssp ------------------------------TSBHHHHHHHHTCCTTTBCCEECTTCCEEECTTSSSCCCCCTTSC
T ss_pred ------------------------------CCCHHHHHHHHhCccccccCEEeECCEEEECCCcccCCchHHHHh
Confidence 356999999999999999999 69999999999999999986544
No 4
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.89 E-value=7.4e-23 Score=232.35 Aligned_cols=199 Identities=16% Similarity=0.133 Sum_probs=175.3
Q ss_pred CCCCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCccccccCCCCCcEE
Q 001385 123 RREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPVLEKL 202 (1088)
Q Consensus 123 ~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L 202 (1088)
...+++.|+|++|.++ .+|..+.++++|++|+|++|. +. .+|..+..+++|++|+|++|.++.+|..+..+++|++|
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~-l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAG-LM-ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLREL 155 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSC-CC-CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEE
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCC-cc-chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEE
Confidence 4588999999999998 588889999999999999998 44 77888999999999999999999999999999999999
Q ss_pred EccCCCCC-CCchhhcC---------CCCCcEEEccCCcCcccchhccCCCCCCEEEeccCCCCCCcccccCCccccEEE
Q 001385 203 YLDNNKLS-TLPPELGA---------MKNLKVLIVDNNMLVCVPVELRECVGLVELSLEHNRLVRPLLDFRAMAELKILR 272 (1088)
Q Consensus 203 ~L~~N~l~-~lp~~l~~---------l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~~~~~l~~l~~L~~L~ 272 (1088)
+|++|++. .+|..+.. +++|++|+|++|.++.+|..+.++++|++|+|++|.++++++.+..+++|+.|+
T Consensus 156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~ 235 (328)
T 4fcg_A 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELD 235 (328)
T ss_dssp EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEE
T ss_pred ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEE
Confidence 99997655 88877654 999999999999999999999999999999999999999888899999999999
Q ss_pred ecCCCCC-CCc-cccCCCCCCeEEeeCCCCCC-C-ccccchhhhhcCcCCccccccccchhh
Q 001385 273 LFGNPLE-FLP-EILPLLKLRHLSLANIRIVA-D-ENLRSVNVQIEMENNSYFGASRHKLSA 330 (1088)
Q Consensus 273 Ls~N~l~-~l~-~l~~l~~L~~L~L~~N~l~~-~-~~l~~l~~~~~l~~l~~l~l~~n~l~~ 330 (1088)
|++|.+. .+| .+..+++|++|+|++|.+.+ . ..+. .+++|+.|++++|.+.+
T Consensus 236 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~------~l~~L~~L~L~~n~~~~ 291 (328)
T 4fcg_A 236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIH------RLTQLEKLDLRGCVNLS 291 (328)
T ss_dssp CTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGG------GCTTCCEEECTTCTTCC
T ss_pred CcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhh------cCCCCCEEeCCCCCchh
Confidence 9998877 444 68899999999999998766 2 2333 47888889988877544
No 5
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.88 E-value=4e-22 Score=232.08 Aligned_cols=256 Identities=18% Similarity=0.149 Sum_probs=139.0
Q ss_pred hcCCCCCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCcccc-ccCCCC
Q 001385 120 VVKRREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVD-LTRLPV 198 (1088)
Q Consensus 120 ~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~ 198 (1088)
.+..+++|++|+|++|.+.+..+..|..+++|++|+|++|. +....+..+..+++|++|+|++|.++.+|.. +..+++
T Consensus 64 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~ 142 (390)
T 3o6n_A 64 LLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPK 142 (390)
T ss_dssp HHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred HhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCC-CCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCC
Confidence 34445555555555555554444455555555555555555 4444444455555555555555555555543 245555
Q ss_pred CcEEEccCCCCCCCc-hhhcCCCCCcEEEccCCcCcccchhccCC-----------------------------------
Q 001385 199 LEKLYLDNNKLSTLP-PELGAMKNLKVLIVDNNMLVCVPVELREC----------------------------------- 242 (1088)
Q Consensus 199 L~~L~L~~N~l~~lp-~~l~~l~~L~~L~Ls~N~l~~lp~~l~~l----------------------------------- 242 (1088)
|++|+|++|.++.++ ..+..+++|++|++++|.++.++ +..+
T Consensus 143 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~ 220 (390)
T 3o6n_A 143 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVV 220 (390)
T ss_dssp CCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEE
T ss_pred CcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeecccccccccCCCCcceEEECCCCeeeec
Confidence 555555555555332 23455555555555555554332 1222
Q ss_pred -----CCCCEEEeccCCCCCCcccccCCccccEEEecCCCCCCC--ccccCCCCCCeEEeeCCCCCCCccccchhhhhcC
Q 001385 243 -----VGLVELSLEHNRLVRPLLDFRAMAELKILRLFGNPLEFL--PEILPLLKLRHLSLANIRIVADENLRSVNVQIEM 315 (1088)
Q Consensus 243 -----~~L~~L~Ls~N~l~~~~~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~~~~l 315 (1088)
++|+.|++++|.+++. +.+..+++|+.|+|++|.++.+ ..+..+++|+.|+|++|.++..+... ..+
T Consensus 221 ~~~~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-----~~l 294 (390)
T 3o6n_A 221 RGPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYG-----QPI 294 (390)
T ss_dssp ECCCCSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSS-----SCC
T ss_pred cccccccccEEECCCCCCccc-HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCccc-----CCC
Confidence 3455555555555443 3455566666666666666522 24556666666666666665532211 135
Q ss_pred cCCccccccccchhhhHHhhhcccCCCCcchhHHHhhhhcCCCCcc-ccccccccccccceeeccCChhhhhhHHHHhcc
Q 001385 316 ENNSYFGASRHKLSAFFSLIFRFSSCHHPLLASALAKIMQDQENRV-VVGKDENAVRQLISMISSDNRHVVEQACSALSS 394 (1088)
Q Consensus 316 ~~l~~l~l~~n~l~~~~~~l~~l~~l~~l~l~~~L~~i~~l~~N~l-~ip~~~~~Lp~L~~L~Ls~N~~v~~~a~~~L~~ 394 (1088)
++|+.|++++|.+..+++.+..+.+++. +++.+|.+ .++ +..+++|+.|++++|+.-++.....+..
T Consensus 295 ~~L~~L~L~~n~l~~~~~~~~~l~~L~~----------L~L~~N~i~~~~--~~~~~~L~~L~l~~N~~~~~~~~~~~~~ 362 (390)
T 3o6n_A 295 PTLKVLDLSHNHLLHVERNQPQFDRLEN----------LYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDCNSLRALFRN 362 (390)
T ss_dssp TTCCEEECCSSCCCCCGGGHHHHTTCSE----------EECCSSCCCCCC--CCTTCCCSEEECCSSCEEHHHHHHHTTT
T ss_pred CCCCEEECCCCcceecCccccccCcCCE----------EECCCCccceeC--chhhccCCEEEcCCCCccchhHHHHHHH
Confidence 6666677777766666655555555543 45667766 332 6778899999999998666554444444
Q ss_pred cc
Q 001385 395 LA 396 (1088)
Q Consensus 395 L~ 396 (1088)
+.
T Consensus 363 ~~ 364 (390)
T 3o6n_A 363 VA 364 (390)
T ss_dssp CC
T ss_pred HH
Confidence 44
No 6
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.88 E-value=3.4e-21 Score=220.26 Aligned_cols=237 Identities=14% Similarity=0.147 Sum_probs=123.9
Q ss_pred cCCCCCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCccccccCCCCCc
Q 001385 121 VKRREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPVLE 200 (1088)
Q Consensus 121 ~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~ 200 (1088)
+..+++|++|++++|.+.+. +. +..+++|+.|++++|.. .... ..+..+++|++|++++|.+..++. +..+++|+
T Consensus 106 ~~~l~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~-~~~~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~ 180 (347)
T 4fmz_A 106 LQNLTNLRELYLNEDNISDI-SP-LANLTKMYSLNLGANHN-LSDL-SPLSNMTGLNYLTVTESKVKDVTP-IANLTDLY 180 (347)
T ss_dssp GTTCTTCSEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTT-CCCC-GGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCS
T ss_pred HcCCCcCCEEECcCCcccCc-hh-hccCCceeEEECCCCCC-cccc-cchhhCCCCcEEEecCCCcCCchh-hccCCCCC
Confidence 44444455555554444432 21 44444555555554431 1111 124455555555555555554443 44555555
Q ss_pred EEEccCCCCCCCchhhcCCCCCcEEEccCCcCcccchhccCCCCCCEEEeccCCCCCCcccccCCccccEEEecCCCCCC
Q 001385 201 KLYLDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVELRECVGLVELSLEHNRLVRPLLDFRAMAELKILRLFGNPLEF 280 (1088)
Q Consensus 201 ~L~L~~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~~~~~l~~l~~L~~L~Ls~N~l~~ 280 (1088)
+|++++|.+..++. +..+++|+.|++++|.++.++. +..+++|++|++++|.++..++ +..+++|+.|++++|.++.
T Consensus 181 ~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~ 257 (347)
T 4fmz_A 181 SLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISD 257 (347)
T ss_dssp EEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC
T ss_pred EEEccCCccccccc-ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCC
Confidence 55555555554443 4555555555555555554433 5555666666666666655443 5556666666666666665
Q ss_pred CccccCCCCCCeEEeeCCCCCCCccccchhhhhcCcCCccccccccchhhhHH-hhhcccCCCCcchhHHHhhhhcCCCC
Q 001385 281 LPEILPLLKLRHLSLANIRIVADENLRSVNVQIEMENNSYFGASRHKLSAFFS-LIFRFSSCHHPLLASALAKIMQDQEN 359 (1088)
Q Consensus 281 l~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~~~~l~~l~~l~l~~n~l~~~~~-~l~~l~~l~~l~l~~~L~~i~~l~~N 359 (1088)
++.+..+++|++|++++|.++..+.+. .+++|+.+++++|.+....+ .+..+.+++. +++.+|
T Consensus 258 ~~~~~~l~~L~~L~l~~n~l~~~~~~~------~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~----------L~L~~n 321 (347)
T 4fmz_A 258 INAVKDLTKLKMLNVGSNQISDISVLN------NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT----------LFLSQN 321 (347)
T ss_dssp CGGGTTCTTCCEEECCSSCCCCCGGGG------GCTTCSEEECCSSCCCGGGHHHHHTCTTCSE----------EECCSS
T ss_pred ChhHhcCCCcCEEEccCCccCCChhhc------CCCCCCEEECcCCcCCCcChhHhhccccCCE----------EEccCC
Confidence 555556666666666666665543322 25566666666666655443 3444444443 345556
Q ss_pred cc-ccccccccccccceeeccCCh
Q 001385 360 RV-VVGKDENAVRQLISMISSDNR 382 (1088)
Q Consensus 360 ~l-~ip~~~~~Lp~L~~L~Ls~N~ 382 (1088)
.+ .++. +..+++|+.|++++|+
T Consensus 322 ~l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 322 HITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp SCCCCGG-GGGCTTCSEESSSCC-
T ss_pred ccccccC-hhhhhccceeehhhhc
Confidence 55 3322 5667777777777665
No 7
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.88 E-value=6e-23 Score=231.56 Aligned_cols=217 Identities=19% Similarity=0.200 Sum_probs=192.6
Q ss_pred hhcCCCCCccEEEeeC-CCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCC-CccccccCC
Q 001385 119 RVVKRREPLRAVVLTK-GVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLS-ALPVDLTRL 196 (1088)
Q Consensus 119 ~~~~~l~~L~~L~Ls~-n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l 196 (1088)
..+..+++|++|+|++ |.+.+.+|..|.++++|++|+|++|. +.+..|..+.++++|++|+|++|.++ .+|..+..+
T Consensus 70 ~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 148 (313)
T 1ogq_A 70 SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN-VSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 148 (313)
T ss_dssp GGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEEC-CEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGC
T ss_pred hhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCe-eCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcC
Confidence 6788999999999995 99998999999999999999999999 66678889999999999999999999 788999999
Q ss_pred CCCcEEEccCCCCC-CCchhhcCCC-CCcEEEccCCcCc-ccchhccCCCCCCEEEeccCCCCCCcc-cccCCccccEEE
Q 001385 197 PVLEKLYLDNNKLS-TLPPELGAMK-NLKVLIVDNNMLV-CVPVELRECVGLVELSLEHNRLVRPLL-DFRAMAELKILR 272 (1088)
Q Consensus 197 ~~L~~L~L~~N~l~-~lp~~l~~l~-~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~Ls~N~l~~~~~-~l~~l~~L~~L~ 272 (1088)
++|++|+|++|+++ .+|..+..++ +|++|++++|.++ .+|..+..++ |+.|+|++|.+++..+ .|..+++|+.|+
T Consensus 149 ~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 227 (313)
T 1ogq_A 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIH 227 (313)
T ss_dssp TTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEE
T ss_pred CCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEE
Confidence 99999999999999 8999999998 9999999999999 8888998887 9999999999987664 689999999999
Q ss_pred ecCCCCC-CCccccCCCCCCeEEeeCCCCCC--CccccchhhhhcCcCCccccccccchhhhHHhhhcccCCCC
Q 001385 273 LFGNPLE-FLPEILPLLKLRHLSLANIRIVA--DENLRSVNVQIEMENNSYFGASRHKLSAFFSLIFRFSSCHH 343 (1088)
Q Consensus 273 Ls~N~l~-~l~~l~~l~~L~~L~L~~N~l~~--~~~l~~l~~~~~l~~l~~l~l~~n~l~~~~~~l~~l~~l~~ 343 (1088)
|++|.++ .++.+..+++|++|+|++|.+++ +..+. .+++|+.|++++|.+++..|....+.++..
T Consensus 228 L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~------~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~ 295 (313)
T 1ogq_A 228 LAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLT------QLKFLHSLNVSFNNLCGEIPQGGNLQRFDV 295 (313)
T ss_dssp CCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGG------GCTTCCEEECCSSEEEEECCCSTTGGGSCG
T ss_pred CCCCceeeecCcccccCCCCEEECcCCcccCcCChHHh------cCcCCCEEECcCCcccccCCCCccccccCh
Confidence 9999998 56678889999999999999984 23333 488999999999999976655555555553
No 8
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.88 E-value=1.2e-22 Score=256.51 Aligned_cols=246 Identities=16% Similarity=0.063 Sum_probs=191.7
Q ss_pred CCCCCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCC-CccccccCC-------CCccEEEccCCCCCCccc--
Q 001385 122 KRREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNN-MGSGFCDHW-------KTVTAVSLCGLGLSALPV-- 191 (1088)
Q Consensus 122 ~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~~~~~~~~l-------~~L~~L~Ls~n~l~~lp~-- 191 (1088)
.++++|+.|+|++|.+.+.+|..|.++++|+.|+|++|+++.+ .+|..+..+ ++|++|+|++|.++.+|.
T Consensus 488 ~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~ 567 (876)
T 4ecn_A 488 SNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASA 567 (876)
T ss_dssp GGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHH
T ss_pred ccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChh
Confidence 3899999999999999999999999999999999999973444 566655544 499999999999999998
Q ss_pred cccCCCCCcEEEccCCCCCCCchhhcCCCCCcEEEccCCcCcccchhccCCCC-CCEEEeccCCCCCCcccccCCc--cc
Q 001385 192 DLTRLPVLEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVELRECVG-LVELSLEHNRLVRPLLDFRAMA--EL 268 (1088)
Q Consensus 192 ~l~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~lp~~l~~l~~-L~~L~Ls~N~l~~~~~~l~~l~--~L 268 (1088)
.+.++++|++|+|++|+++.+| .+..+++|+.|+|++|.++.+|..+.++++ |+.|+|++|.++.++..+..++ +|
T Consensus 568 ~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L 646 (876)
T 4ecn_A 568 SLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVM 646 (876)
T ss_dssp HHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCE
T ss_pred hhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCC
Confidence 8999999999999999999999 899999999999999999999999999999 9999999999997766666654 48
Q ss_pred cEEEecCCCCC-CCcccc------CCCCCCeEEeeCCCCCCCccccchhhhhcCcCCccccccccchhhhHHhhhccc--
Q 001385 269 KILRLFGNPLE-FLPEIL------PLLKLRHLSLANIRIVADENLRSVNVQIEMENNSYFGASRHKLSAFFSLIFRFS-- 339 (1088)
Q Consensus 269 ~~L~Ls~N~l~-~l~~l~------~l~~L~~L~L~~N~l~~~~~l~~l~~~~~l~~l~~l~l~~n~l~~~~~~l~~l~-- 339 (1088)
+.|+|++|.+. .+|.+. .+++|+.|+|++|.++.++.-. +..+++|+.|++++|.+..+|..++...
T Consensus 647 ~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~----~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~ 722 (876)
T 4ecn_A 647 GSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTEL----FATGSPISTIILSNNLMTSIPENSLKPKDG 722 (876)
T ss_dssp EEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHH----HHTTCCCSEEECCSCCCSCCCTTSSSCTTS
T ss_pred CEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHH----HccCCCCCEEECCCCcCCccChHHhccccc
Confidence 99999999887 334332 4457888888888888643211 1246778888888888776665443321
Q ss_pred ------CCCCcchhHHHhhhhcCCCCcc-ccccccc--cccccceeeccCCh
Q 001385 340 ------SCHHPLLASALAKIMQDQENRV-VVGKDEN--AVRQLISMISSDNR 382 (1088)
Q Consensus 340 ------~l~~l~l~~~L~~i~~l~~N~l-~ip~~~~--~Lp~L~~L~Ls~N~ 382 (1088)
+|+. +++++|.+ .+|..+. .+++|+.|++++|.
T Consensus 723 ~l~nl~~L~~----------L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~ 764 (876)
T 4ecn_A 723 NYKNTYLLTT----------IDLRFNKLTSLSDDFRATTLPYLSNMDVSYNC 764 (876)
T ss_dssp CCTTGGGCCE----------EECCSSCCCCCCGGGSTTTCTTCCEEECCSSC
T ss_pred cccccCCccE----------EECCCCCCccchHHhhhccCCCcCEEEeCCCC
Confidence 2222 34555555 5565555 66677777776665
No 9
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.88 E-value=2.3e-22 Score=254.78 Aligned_cols=242 Identities=17% Similarity=0.179 Sum_probs=161.6
Q ss_pred CCCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCC-CccccccCCCCCcEE
Q 001385 124 REPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLS-ALPVDLTRLPVLEKL 202 (1088)
Q Consensus 124 l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 202 (1088)
+++|++|++++|.+++.+|..+.++++|++|+|++|. +.+..|..+..+++|++|+|++|.++ .+|..+..+++|++|
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 471 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY-LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETL 471 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSE-EESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCc-ccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEE
Confidence 4566666666666666666667777777777777776 55556666667777777777777766 566666677777777
Q ss_pred EccCCCCC-CCchhhcCCCCCcEEEccCCcCc-ccchhccCCCCCCEEEeccCCCCCCc-ccccCCccccEEEecCCCCC
Q 001385 203 YLDNNKLS-TLPPELGAMKNLKVLIVDNNMLV-CVPVELRECVGLVELSLEHNRLVRPL-LDFRAMAELKILRLFGNPLE 279 (1088)
Q Consensus 203 ~L~~N~l~-~lp~~l~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~Ls~N~l~~~~-~~l~~l~~L~~L~Ls~N~l~ 279 (1088)
+|++|+++ .+|..+.++++|++|+|++|+++ .+|..++++++|+.|+|++|++++.. ..+..+++|+.|+|++|+++
T Consensus 472 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 551 (768)
T 3rgz_A 472 ILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 551 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred EecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccC
Confidence 77777776 56666677777777777777776 66666777777777777777776443 35666777777777766654
Q ss_pred -CCc-----------------------------------------------------------------------cccCC
Q 001385 280 -FLP-----------------------------------------------------------------------EILPL 287 (1088)
Q Consensus 280 -~l~-----------------------------------------------------------------------~l~~l 287 (1088)
.+| .+..+
T Consensus 552 g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l 631 (768)
T 3rgz_A 552 GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN 631 (768)
T ss_dssp SBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSS
T ss_pred CcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcc
Confidence 222 12234
Q ss_pred CCCCeEEeeCCCCCC--CccccchhhhhcCcCCccccccccchhhh-HHhhhcccCCCCcchhHHHhhhhcCCCCcc--c
Q 001385 288 LKLRHLSLANIRIVA--DENLRSVNVQIEMENNSYFGASRHKLSAF-FSLIFRFSSCHHPLLASALAKIMQDQENRV--V 362 (1088)
Q Consensus 288 ~~L~~L~L~~N~l~~--~~~l~~l~~~~~l~~l~~l~l~~n~l~~~-~~~l~~l~~l~~l~l~~~L~~i~~l~~N~l--~ 362 (1088)
++|+.|+|++|.+++ +..+. .++.|+.|++++|.+++. |..+.++.+++. +++++|.+ .
T Consensus 632 ~~L~~LdLs~N~l~g~ip~~l~------~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~----------LdLs~N~l~g~ 695 (768)
T 3rgz_A 632 GSMMFLDMSYNMLSGYIPKEIG------SMPYLFILNLGHNDISGSIPDEVGDLRGLNI----------LDLSSNKLDGR 695 (768)
T ss_dssp BCCCEEECCSSCCBSCCCGGGG------GCTTCCEEECCSSCCCSCCCGGGGGCTTCCE----------EECCSSCCEEC
T ss_pred ccccEEECcCCcccccCCHHHh------ccccCCEEeCcCCccCCCCChHHhCCCCCCE----------EECCCCcccCc
Confidence 566777777777764 22333 366677777777777643 345666666654 46777777 6
Q ss_pred cccccccccccceeeccCCh
Q 001385 363 VGKDENAVRQLISMISSDNR 382 (1088)
Q Consensus 363 ip~~~~~Lp~L~~L~Ls~N~ 382 (1088)
+|..++.++.|+.|++++|.
T Consensus 696 ip~~l~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 696 IPQAMSALTMLTEIDLSNNN 715 (768)
T ss_dssp CCGGGGGCCCCSEEECCSSE
T ss_pred CChHHhCCCCCCEEECcCCc
Confidence 78888888888888888886
No 10
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=6.2e-22 Score=243.55 Aligned_cols=257 Identities=18% Similarity=0.143 Sum_probs=151.1
Q ss_pred hhcCCCCCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCcccc-ccCCC
Q 001385 119 RVVKRREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVD-LTRLP 197 (1088)
Q Consensus 119 ~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~-l~~l~ 197 (1088)
..+..+++|++|+|++|.+++..|..|..+++|++|+|++|. +....+..|+.+++|++|+|++|.|+.+|.. +..++
T Consensus 69 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~ 147 (597)
T 3oja_B 69 ALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTP 147 (597)
T ss_dssp HHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred HHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc-CCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCC
Confidence 345556666666666666665555566666666666666666 4555555566666666666666666666554 35666
Q ss_pred CCcEEEccCCCCCCCc-hhhcCCCCCcEEEccCCcCcccchhccCCC---------------------------------
Q 001385 198 VLEKLYLDNNKLSTLP-PELGAMKNLKVLIVDNNMLVCVPVELRECV--------------------------------- 243 (1088)
Q Consensus 198 ~L~~L~L~~N~l~~lp-~~l~~l~~L~~L~Ls~N~l~~lp~~l~~l~--------------------------------- 243 (1088)
+|++|+|++|.++.++ ..|..+++|++|+|++|.++.++ +..++
T Consensus 148 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~ 225 (597)
T 3oja_B 148 KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINV 225 (597)
T ss_dssp TCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCE
T ss_pred CCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCccccccCCchhheeeccCCcccc
Confidence 6666666666666433 34566666666666666665443 22222
Q ss_pred -------CCCEEEeccCCCCCCcccccCCccccEEEecCCCCCCC--ccccCCCCCCeEEeeCCCCCCCccccchhhhhc
Q 001385 244 -------GLVELSLEHNRLVRPLLDFRAMAELKILRLFGNPLEFL--PEILPLLKLRHLSLANIRIVADENLRSVNVQIE 314 (1088)
Q Consensus 244 -------~L~~L~Ls~N~l~~~~~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~~~~ 314 (1088)
+|+.|+|++|.+++. +.+..+++|+.|+|++|.++.+ ..+..+++|+.|+|++|.++.++... ..
T Consensus 226 ~~~~~~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~-----~~ 299 (597)
T 3oja_B 226 VRGPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYG-----QP 299 (597)
T ss_dssp EECSCCSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSS-----SC
T ss_pred cccccCCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCccc-----cc
Confidence 344444444444442 3455566666666666666522 24556666666666666665532211 12
Q ss_pred CcCCccccccccchhhhHHhhhcccCCCCcchhHHHhhhhcCCCCcc-ccccccccccccceeeccCChhhhhhHHHHhc
Q 001385 315 MENNSYFGASRHKLSAFFSLIFRFSSCHHPLLASALAKIMQDQENRV-VVGKDENAVRQLISMISSDNRHVVEQACSALS 393 (1088)
Q Consensus 315 l~~l~~l~l~~n~l~~~~~~l~~l~~l~~l~l~~~L~~i~~l~~N~l-~ip~~~~~Lp~L~~L~Ls~N~~v~~~a~~~L~ 393 (1088)
+++|+.|++++|.+..+|..+..+.+|.. +++.+|.+ .+ .+..+++|+.|++++|+..++.....+.
T Consensus 300 l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~----------L~L~~N~l~~~--~~~~~~~L~~L~l~~N~~~~~~~~~~~~ 367 (597)
T 3oja_B 300 IPTLKVLDLSHNHLLHVERNQPQFDRLEN----------LYLDHNSIVTL--KLSTHHTLKNLTLSHNDWDCNSLRALFR 367 (597)
T ss_dssp CTTCCEEECCSSCCCCCGGGHHHHTTCSE----------EECCSSCCCCC--CCCTTCCCSEEECCSSCEEHHHHHHHTT
T ss_pred CCCCcEEECCCCCCCccCcccccCCCCCE----------EECCCCCCCCc--ChhhcCCCCEEEeeCCCCCChhHHHHHH
Confidence 56666677777766666655555555543 45667776 33 3677899999999999876665444444
Q ss_pred ccc
Q 001385 394 SLA 396 (1088)
Q Consensus 394 ~L~ 396 (1088)
.+.
T Consensus 368 ~~~ 370 (597)
T 3oja_B 368 NVA 370 (597)
T ss_dssp TCC
T ss_pred HHh
Confidence 443
No 11
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.87 E-value=2e-22 Score=254.51 Aligned_cols=252 Identities=17% Similarity=0.208 Sum_probs=211.5
Q ss_pred hhcCCCCCccEEEeeCCCCCC-----------------CCccccc--cCccccEEeCcCCCCCCCCccccccCCCCccEE
Q 001385 119 RVVKRREPLRAVVLTKGVGSG-----------------HLSDGIG--VLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAV 179 (1088)
Q Consensus 119 ~~~~~l~~L~~L~Ls~n~i~~-----------------~~p~~l~--~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L 179 (1088)
..+.++++|++|+|++|.|++ .+|..++ ++++|++|+|++|. +.+.+|..+.++++|++|
T Consensus 442 ~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~-l~~~iP~~l~~L~~L~~L 520 (876)
T 4ecn_A 442 KAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCP-NMTQLPDFLYDLPELQSL 520 (876)
T ss_dssp GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCT-TCCSCCGGGGGCSSCCEE
T ss_pred HHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCC-CCccChHHHhCCCCCCEE
Confidence 568899999999999999998 3888887 99999999999998 677888999999999999
Q ss_pred EccCCC-CC--CccccccCCC-------CCcEEEccCCCCCCCch--hhcCCCCCcEEEccCCcCcccchhccCCCCCCE
Q 001385 180 SLCGLG-LS--ALPVDLTRLP-------VLEKLYLDNNKLSTLPP--ELGAMKNLKVLIVDNNMLVCVPVELRECVGLVE 247 (1088)
Q Consensus 180 ~Ls~n~-l~--~lp~~l~~l~-------~L~~L~L~~N~l~~lp~--~l~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~ 247 (1088)
+|++|+ ++ .+|..++.+. +|++|+|++|+++.+|. .+.++++|+.|+|++|.++.+| .+.++++|+.
T Consensus 521 ~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~ 599 (876)
T 4ecn_A 521 NIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTD 599 (876)
T ss_dssp ECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESE
T ss_pred ECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceE
Confidence 999998 88 4887666554 99999999999999998 8999999999999999999999 8999999999
Q ss_pred EEeccCCCCCCcccccCCcc-ccEEEecCCCCCCCcc-ccCC--CCCCeEEeeCCCCCCC-ccccchhhhhcCcCCcccc
Q 001385 248 LSLEHNRLVRPLLDFRAMAE-LKILRLFGNPLEFLPE-ILPL--LKLRHLSLANIRIVAD-ENLRSVNVQIEMENNSYFG 322 (1088)
Q Consensus 248 L~Ls~N~l~~~~~~l~~l~~-L~~L~Ls~N~l~~l~~-l~~l--~~L~~L~L~~N~l~~~-~~l~~l~~~~~l~~l~~l~ 322 (1088)
|+|++|.++.++..+..+++ |+.|+|++|.++.+|. +..+ ++|+.|+|++|.+.+. +.+..-.....+.+|+.|+
T Consensus 600 L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~ 679 (876)
T 4ecn_A 600 LKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVT 679 (876)
T ss_dssp EECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEE
T ss_pred EECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEE
Confidence 99999999977778999999 9999999999997774 4444 3599999999999873 3332100122356899999
Q ss_pred ccccchhhhHHhhh-cccCCCCcchhHHHhhhhcCCCCcc-cccccccc--------ccccceeeccCCh
Q 001385 323 ASRHKLSAFFSLIF-RFSSCHHPLLASALAKIMQDQENRV-VVGKDENA--------VRQLISMISSDNR 382 (1088)
Q Consensus 323 l~~n~l~~~~~~l~-~l~~l~~l~l~~~L~~i~~l~~N~l-~ip~~~~~--------Lp~L~~L~Ls~N~ 382 (1088)
++.|.+..+|..++ .+.+++. +++++|.+ .+|..+.. +++|+.|++++|.
T Consensus 680 Ls~N~L~~lp~~~~~~l~~L~~----------L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~ 739 (876)
T 4ecn_A 680 LSYNEIQKFPTELFATGSPIST----------IILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNK 739 (876)
T ss_dssp CCSSCCCSCCHHHHHTTCCCSE----------EECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSC
T ss_pred ccCCcCCccCHHHHccCCCCCE----------EECCCCcCCccChHHhccccccccccCCccEEECCCCC
Confidence 99999998887665 6677665 45666766 56665433 4499999999997
No 12
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.87 E-value=1.4e-21 Score=233.91 Aligned_cols=250 Identities=18% Similarity=0.184 Sum_probs=180.0
Q ss_pred hhhcCCCCCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCc-cccccCC
Q 001385 118 MRVVKRREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSAL-PVDLTRL 196 (1088)
Q Consensus 118 ~~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~l-p~~l~~l 196 (1088)
...|..+++|++|+|++|.+++..|..|.++++|++|+|++|. +....+..|.++++|++|+|++|.++.+ +..+..+
T Consensus 49 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l 127 (477)
T 2id5_A 49 QDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDL 127 (477)
T ss_dssp TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred HhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-CCccCcccccCCCCCCEEECCCCccccCChhHcccc
Confidence 3567788888888888888887777888888888888888887 5566666777888888888888888855 4567788
Q ss_pred CCCcEEEccCCCCCCC-chhhcCCCCCcEEEccCCcCcccch-hccCCCCCCEEEeccCCCCCCcc-cccCCccccEEEe
Q 001385 197 PVLEKLYLDNNKLSTL-PPELGAMKNLKVLIVDNNMLVCVPV-ELRECVGLVELSLEHNRLVRPLL-DFRAMAELKILRL 273 (1088)
Q Consensus 197 ~~L~~L~L~~N~l~~l-p~~l~~l~~L~~L~Ls~N~l~~lp~-~l~~l~~L~~L~Ls~N~l~~~~~-~l~~l~~L~~L~L 273 (1088)
++|++|+|++|.++.+ +..|..+++|+.|+|++|.++.++. .+.++++|+.|+|++|.+.+..+ .|..+++|+.|++
T Consensus 128 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l 207 (477)
T 2id5_A 128 YNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEI 207 (477)
T ss_dssp TTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEE
T ss_pred ccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeC
Confidence 8888888888888744 4567788888888888888886664 46788888888888888877664 5777888888888
Q ss_pred cCCCCC-CC-ccccCCCCCCeEEeeCCCCCCCccccchhhhhcCcCCccccccccchhhhHH-hhhcccCCCCcchhHHH
Q 001385 274 FGNPLE-FL-PEILPLLKLRHLSLANIRIVADENLRSVNVQIEMENNSYFGASRHKLSAFFS-LIFRFSSCHHPLLASAL 350 (1088)
Q Consensus 274 s~N~l~-~l-~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~~~~l~~l~~l~l~~n~l~~~~~-~l~~l~~l~~l~l~~~L 350 (1088)
++|.+. .+ +......+|++|+|++|.++..+... +..+++|+.|++++|.+...++ .+..+.+|+.
T Consensus 208 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~------- 276 (477)
T 2id5_A 208 SHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLA----VRHLVYLRFLNLSYNPISTIEGSMLHELLRLQE------- 276 (477)
T ss_dssp ECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHH----HTTCTTCCEEECCSSCCCEECTTSCTTCTTCCE-------
T ss_pred CCCccccccCcccccCccccEEECcCCcccccCHHH----hcCccccCeeECCCCcCCccChhhccccccCCE-------
Confidence 877654 22 23444557888888888777653211 2246778888888887776654 2344454443
Q ss_pred hhhhcCCCCcc--ccccccccccccceeeccCCh
Q 001385 351 AKIMQDQENRV--VVGKDENAVRQLISMISSDNR 382 (1088)
Q Consensus 351 ~~i~~l~~N~l--~ip~~~~~Lp~L~~L~Ls~N~ 382 (1088)
+++.+|.+ ..+..+..+++|+.|++++|.
T Consensus 277 ---L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 307 (477)
T 2id5_A 277 ---IQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ 307 (477)
T ss_dssp ---EECCSSCCSEECTTTBTTCTTCCEEECCSSC
T ss_pred ---EECCCCccceECHHHhcCcccCCEEECCCCc
Confidence 34555655 335566677777777777775
No 13
>3tu3_B EXOU; type III secretion system, SPC infectious diseases, structural genomics, center for struct genomics of infectious diseases, csgid; 1.92A {Pseudomonas aeruginosa} PDB: 4akx_B*
Probab=99.87 E-value=1.7e-22 Score=231.59 Aligned_cols=198 Identities=19% Similarity=0.245 Sum_probs=112.5
Q ss_pred CCCceEEEecCCCchHHHHHHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhcCCCCHHHHHHHHHHhh-ccccCCC
Q 001385 537 KQGLRILSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLG-KLVFAEP 615 (1088)
Q Consensus 537 ~~~~riLsLdGGG~RG~~~~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~~~~s~~e~~~~y~~~~-~~iF~~~ 615 (1088)
.++...|+|+|||+||++++|||++|++. | +...||+|+|||+|||+|++++.+ ++.+++.++|..+. .++|...
T Consensus 125 ~~p~iaLVLsGGGaRG~~hiGVLkaLeE~-G--i~p~fD~IaGTSAGAIiAAllAaG-~s~~el~~l~~~ld~~~f~D~~ 200 (711)
T 3tu3_B 125 RPPLTSLVLSGGGAKGAAYPGAMLALEEK-G--MLDGIRSMSGSSAGGITAALLASG-MSPAAFKTLSDKMDLISLLDSS 200 (711)
T ss_dssp CCCEEEEEECCCGGGGGGHHHHHHHHHHT-T--CSTTCCEEEEETTHHHHHHHHHTT-CCHHHHHHHHHTCCHHHHHHHS
T ss_pred CCCceEEEEcCcHHHHHHHHHHHHHHHHc-C--CCCCccEEEeecHHHHHHHHHHcC-CCHHHHHHHHHhCCHHHhcCCc
Confidence 34568999999999999999999999986 3 445699999999999999999875 89999999998776 3344332
Q ss_pred CCCCchhhhHHHHHHHHhhcccccceeEecc-------------------C------------------------CCCHH
Q 001385 616 FPKDNEAATWREKLDQIYKSSSQSFRVVVHG-------------------S------------------------KHSAD 652 (1088)
Q Consensus 616 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~-------------------~------------------------~~~~~ 652 (1088)
.... .|... +++.....+...+.+ + .++..
T Consensus 201 ~~~~----g~lq~---l~~efG~~~~~~lpg~~g~a~rlLl~l~P~~Qs~g~pl~dllr~~~r~slL~~ia~~P~~~~~~ 273 (711)
T 3tu3_B 201 NKKL----KLFQH---ISSEIGASLKKGLGNKIGGFSELLLNVLPRIDSRAEPLERLLRDETRKAVLGQIATHPEVARQP 273 (711)
T ss_dssp CCCC----HHHHH---TTC---------------CHHHHHHHHGGGCCCTTSHHHHHHHHHHHHHHHHHHHHCHHHHTSH
T ss_pred hhhh----hhHHH---HHHHHhHHHhccCCcchhhhHHhhhhcccccccccchHHHHHHHHHHHHHHHHHhcCcccccch
Confidence 1111 12111 111000000000000 0 01122
Q ss_pred HHHHHHHHHhcCCCCCchhcccc-----C-CCCEEEEEEeeeccCCCcc--EEeecCCCCCCCCCCCccccCCCCccccC
Q 001385 653 QFERLLKEMCADEDGDLLIESSV-----K-NIPKVFTVSTLVNVMPAQP--FIFRNYQYPAGTPEVPFSISENSGITVLG 724 (1088)
Q Consensus 653 ~le~~Lk~~~~~~~g~~~~~~~~-----~-~~~k~~vv~t~~d~~~~~~--~lf~ny~~~~~~~~~~~~~~~~~~~~~~~ 724 (1088)
.+..+++++.. .++.+|.+.. . ..+.+.+++| |+.++++ ++|...+.|
T Consensus 274 ~l~~Ll~rL~~--~~~ITF~dL~~L~~~~P~~k~L~IvAT--NL~TGkpelvyFs~~~tP-------------------- 329 (711)
T 3tu3_B 274 TVAAIASRLQS--GSGVTFGDLDRLSAYIPQIKTLNITGT--AMFEGRPQLVVFNASHTP-------------------- 329 (711)
T ss_dssp HHHHHHHHHHT--TCCCBHHHHHHHHTTCTTSCEEEEEEE--EEETTEEEEEEESTTTCT--------------------
T ss_pred hHHHHHHHhcC--CCCCCHHHHHHHhhcCCCCceEEEEEE--ECCCCCcceEEeCCCCCC--------------------
Confidence 22334444432 2556666522 1 2235555555 8899997 688654322
Q ss_pred CCCCCCccccccccccCCCcchHHHHHHHhcCCCCCCCCccCCCc---------eeeeCcccCCChHHHHHHH
Q 001385 725 SPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLDDFSDDVF---------RWQDGAIVANNPTIFAIRE 788 (1088)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~l~dA~rASsAaP~yF~p~~~~~~---------~~vDGGl~~NNP~~~Ai~E 788 (1088)
++.||+|+|||||+|+||+|+.+++. .|+|||+.+|+|+..++..
T Consensus 330 -------------------d~~I~dAVRASsSlP~vF~PV~I~G~~f~~~~e~~~YVDGGIsdNiPI~~l~d~ 383 (711)
T 3tu3_B 330 -------------------DLEVAQAAHISGSFPGVFQKVSLSDQPYQAGVEWTEFQDGGVMINVPVPEMIDK 383 (711)
T ss_dssp -------------------TSBHHHHHHHHHHCC----------------------------CCCCGGGGSCC
T ss_pred -------------------CchHHHHHHHHhcccccCCCEEECCccccccccCceEeecCcCCCcCHHHHHhC
Confidence 46799999999999999999999987 8999999999999775543
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.87 E-value=1.4e-22 Score=250.94 Aligned_cols=249 Identities=15% Similarity=0.097 Sum_probs=191.6
Q ss_pred hhcC--CCCCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCC-CccccccCC------CCccEEEccCCCCCCc
Q 001385 119 RVVK--RREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNN-MGSGFCDHW------KTVTAVSLCGLGLSAL 189 (1088)
Q Consensus 119 ~~~~--~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~~~~~~~~l------~~L~~L~Ls~n~l~~l 189 (1088)
..+. ++++|++|+|++|.+.+.+|..|+++++|++|+|++|+++.+ .+|..+..+ ++|++|+|++|.++.+
T Consensus 241 ~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~i 320 (636)
T 4eco_A 241 EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTF 320 (636)
T ss_dssp SCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSC
T ss_pred hhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCcc
Confidence 4556 899999999999999999999999999999999999973444 577777666 9999999999999999
Q ss_pred cc--cccCCCCCcEEEccCCCCC-CCchhhcCCCCCcEEEccCCcCcccchhccCCCC-CCEEEeccCCCCCCcccccCC
Q 001385 190 PV--DLTRLPVLEKLYLDNNKLS-TLPPELGAMKNLKVLIVDNNMLVCVPVELRECVG-LVELSLEHNRLVRPLLDFRAM 265 (1088)
Q Consensus 190 p~--~l~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~Ls~N~l~~lp~~l~~l~~-L~~L~Ls~N~l~~~~~~l~~l 265 (1088)
|. .+.++++|++|+|++|+++ .+| .+..+++|++|+|++|.++.+|..+.++++ |++|++++|.++.++..+..+
T Consensus 321 p~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~ 399 (636)
T 4eco_A 321 PVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAK 399 (636)
T ss_dssp CCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTT
T ss_pred CchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhc
Confidence 98 8999999999999999999 898 888999999999999999999999999998 999999999998776666554
Q ss_pred c--cccEEEecCCCCC-CCc-ccc-------CCCCCCeEEeeCCCCCCCccccchhhhhcCcCCccccccccchhhhHHh
Q 001385 266 A--ELKILRLFGNPLE-FLP-EIL-------PLLKLRHLSLANIRIVADENLRSVNVQIEMENNSYFGASRHKLSAFFSL 334 (1088)
Q Consensus 266 ~--~L~~L~Ls~N~l~-~l~-~l~-------~l~~L~~L~L~~N~l~~~~~l~~l~~~~~l~~l~~l~l~~n~l~~~~~~ 334 (1088)
+ +|+.|++++|.++ .+| .+. .+.+|++|+|++|.++..+.-. +..+++|+.|++++|.++.++..
T Consensus 400 ~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~----~~~l~~L~~L~Ls~N~l~~i~~~ 475 (636)
T 4eco_A 400 SVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKEL----FSTGSPLSSINLMGNMLTEIPKN 475 (636)
T ss_dssp CSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHH----HHTTCCCSEEECCSSCCSBCCSS
T ss_pred ccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHH----HccCCCCCEEECCCCCCCCcCHH
Confidence 4 8888888888887 233 344 6678888888888888643211 12367777778887777765543
Q ss_pred hhccc--------CCCCcchhHHHhhhhcCCCCcc-ccccccc--cccccceeeccCCh
Q 001385 335 IFRFS--------SCHHPLLASALAKIMQDQENRV-VVGKDEN--AVRQLISMISSDNR 382 (1088)
Q Consensus 335 l~~l~--------~l~~l~l~~~L~~i~~l~~N~l-~ip~~~~--~Lp~L~~L~Ls~N~ 382 (1088)
++... +++. +++.+|.+ .+|..+. .+++|+.|++++|.
T Consensus 476 ~~~~~~~~~~~l~~L~~----------L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~ 524 (636)
T 4eco_A 476 SLKDENENFKNTYLLTS----------IDLRFNKLTKLSDDFRATTLPYLVGIDLSYNS 524 (636)
T ss_dssp SSEETTEECTTGGGCCE----------EECCSSCCCBCCGGGSTTTCTTCCEEECCSSC
T ss_pred HhccccccccccCCccE----------EECcCCcCCccChhhhhccCCCcCEEECCCCC
Confidence 33211 2222 34445544 4555554 56666666666665
No 15
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.87 E-value=5.3e-21 Score=218.71 Aligned_cols=197 Identities=16% Similarity=0.183 Sum_probs=127.0
Q ss_pred hcCCCCCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCccccccCCCCC
Q 001385 120 VVKRREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPVL 199 (1088)
Q Consensus 120 ~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L 199 (1088)
.+..+++|++|++++|.+++. +. +.++++|++|+|++|. +... ..+..+++|++|+|++|.++.++. +..+++|
T Consensus 61 ~~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~-i~~~--~~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L 134 (347)
T 4fmz_A 61 GIEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNK-ITDI--SALQNLTNLRELYLNEDNISDISP-LANLTKM 134 (347)
T ss_dssp TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSC-CCCC--GGGTTCTTCSEEECTTSCCCCCGG-GTTCTTC
T ss_pred hhhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCc-ccCc--hHHcCCCcCCEEECcCCcccCchh-hccCCce
Confidence 466777888888888877663 33 7777888888888876 3332 346777888888888888777765 6777777
Q ss_pred cEEEccCCCCCCCchhhcCCCCCcEEEccCCcCcccchhccCCCCCCEEEeccCCCCCCcccccCCccccEEEecCCCCC
Q 001385 200 EKLYLDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVELRECVGLVELSLEHNRLVRPLLDFRAMAELKILRLFGNPLE 279 (1088)
Q Consensus 200 ~~L~L~~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~~~~~l~~l~~L~~L~Ls~N~l~ 279 (1088)
++|++++|.....+..+..+++|++|++++|.+..++. +..+++|++|++++|.+.+..+ +..+++|+.|++++|.++
T Consensus 135 ~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~ 212 (347)
T 4fmz_A 135 YSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQIT 212 (347)
T ss_dssp CEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCC
T ss_pred eEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCC
Confidence 77777777544333346777777777777777766554 6666777777777777665543 555566666666666665
Q ss_pred CCccccCCCCCCeEEeeCCCCCCCccccchhhhhcCcCCccccccccchhh
Q 001385 280 FLPEILPLLKLRHLSLANIRIVADENLRSVNVQIEMENNSYFGASRHKLSA 330 (1088)
Q Consensus 280 ~l~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~~~~l~~l~~l~l~~n~l~~ 330 (1088)
.++.+..+++|++|++++|.++..+.+. .+++|+.+++++|.+..
T Consensus 213 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~------~l~~L~~L~l~~n~l~~ 257 (347)
T 4fmz_A 213 DITPVANMTRLNSLKIGNNKITDLSPLA------NLSQLTWLEIGTNQISD 257 (347)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCCCGGGT------TCTTCCEEECCSSCCCC
T ss_pred CCchhhcCCcCCEEEccCCccCCCcchh------cCCCCCEEECCCCccCC
Confidence 4444555566666666666555543322 24555555555555544
No 16
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.87 E-value=9.8e-22 Score=248.94 Aligned_cols=250 Identities=20% Similarity=0.244 Sum_probs=217.2
Q ss_pred hhcCCCCCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCC-CccccccCCC
Q 001385 119 RVVKRREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLS-ALPVDLTRLP 197 (1088)
Q Consensus 119 ~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~ 197 (1088)
..+..+++|++|+|++|.+++.+|..+.++++|+.|+|++|. +.+..|..+..+++|++|+|++|.++ .+|..+..++
T Consensus 412 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 490 (768)
T 3rgz_A 412 PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM-LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCT 490 (768)
T ss_dssp GGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC-CCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred HHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCc-ccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCC
Confidence 568889999999999999999999999999999999999999 77788999999999999999999999 7888999999
Q ss_pred CCcEEEccCCCCC-CCchhhcCCCCCcEEEccCCcCc-ccchhccCCCCCCEEEeccCCCCCCcc---------------
Q 001385 198 VLEKLYLDNNKLS-TLPPELGAMKNLKVLIVDNNMLV-CVPVELRECVGLVELSLEHNRLVRPLL--------------- 260 (1088)
Q Consensus 198 ~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~Ls~N~l~~~~~--------------- 260 (1088)
+|++|+|++|+++ .+|..++.+++|++|+|++|+++ .+|..+.++++|+.|++++|.+++..+
T Consensus 491 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~ 570 (768)
T 3rgz_A 491 NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFI 570 (768)
T ss_dssp TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTT
T ss_pred CCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcc
Confidence 9999999999999 89999999999999999999999 899999999999999999998874322
Q ss_pred --------------------------------------------------------cccCCccccEEEecCCCCC-CCc-
Q 001385 261 --------------------------------------------------------DFRAMAELKILRLFGNPLE-FLP- 282 (1088)
Q Consensus 261 --------------------------------------------------------~l~~l~~L~~L~Ls~N~l~-~l~- 282 (1088)
.+..+++|+.|+|++|+++ .+|
T Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~ 650 (768)
T 3rgz_A 571 AGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK 650 (768)
T ss_dssp CSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCG
T ss_pred ccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCH
Confidence 2344678999999999998 555
Q ss_pred cccCCCCCCeEEeeCCCCCC--CccccchhhhhcCcCCccccccccchhhhH-HhhhcccCCCCcchhHHHhhhhcCCCC
Q 001385 283 EILPLLKLRHLSLANIRIVA--DENLRSVNVQIEMENNSYFGASRHKLSAFF-SLIFRFSSCHHPLLASALAKIMQDQEN 359 (1088)
Q Consensus 283 ~l~~l~~L~~L~L~~N~l~~--~~~l~~l~~~~~l~~l~~l~l~~n~l~~~~-~~l~~l~~l~~l~l~~~L~~i~~l~~N 359 (1088)
.+..+++|+.|+|++|.+++ +..+. .+++|+.|++++|++++.. ..+..+..|+. +++++|
T Consensus 651 ~l~~l~~L~~L~Ls~N~l~g~ip~~l~------~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~----------L~ls~N 714 (768)
T 3rgz_A 651 EIGSMPYLFILNLGHNDISGSIPDEVG------DLRGLNILDLSSNKLDGRIPQAMSALTMLTE----------IDLSNN 714 (768)
T ss_dssp GGGGCTTCCEEECCSSCCCSCCCGGGG------GCTTCCEEECCSSCCEECCCGGGGGCCCCSE----------EECCSS
T ss_pred HHhccccCCEEeCcCCccCCCCChHHh------CCCCCCEEECCCCcccCcCChHHhCCCCCCE----------EECcCC
Confidence 79999999999999999986 34454 3889999999999999755 56777777765 578889
Q ss_pred cc--ccccccccccccceeeccCChhhhh
Q 001385 360 RV--VVGKDENAVRQLISMISSDNRHVVE 386 (1088)
Q Consensus 360 ~l--~ip~~~~~Lp~L~~L~Ls~N~~v~~ 386 (1088)
.+ .+|. .+.+..+..+.+.+|+.+|.
T Consensus 715 ~l~g~iP~-~~~~~~~~~~~~~gN~~Lcg 742 (768)
T 3rgz_A 715 NLSGPIPE-MGQFETFPPAKFLNNPGLCG 742 (768)
T ss_dssp EEEEECCS-SSSGGGSCGGGGCSCTEEES
T ss_pred cccccCCC-chhhccCCHHHhcCCchhcC
Confidence 88 5554 45677777788889986654
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.87 E-value=1.7e-22 Score=250.13 Aligned_cols=252 Identities=19% Similarity=0.212 Sum_probs=213.6
Q ss_pred hhcCCCCCccEEEeeCCCCCCC-----------------Cccccc--cCccccEEeCcCCCCCCCCccccccCCCCccEE
Q 001385 119 RVVKRREPLRAVVLTKGVGSGH-----------------LSDGIG--VLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAV 179 (1088)
Q Consensus 119 ~~~~~l~~L~~L~Ls~n~i~~~-----------------~p~~l~--~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L 179 (1088)
..+.++++|++|+|++|.+++. +|..++ ++++|++|+|++|. +.+.+|..+.++++|++|
T Consensus 200 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L 278 (636)
T 4eco_A 200 KAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCP-NLTKLPTFLKALPEMQLI 278 (636)
T ss_dssp GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCT-TCSSCCTTTTTCSSCCEE
T ss_pred HHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCc-CCccChHHHhcCCCCCEE
Confidence 5688999999999999999986 899999 99999999999999 677889999999999999
Q ss_pred EccCCC-CC--CccccccCC------CCCcEEEccCCCCCCCch--hhcCCCCCcEEEccCCcCc-ccchhccCCCCCCE
Q 001385 180 SLCGLG-LS--ALPVDLTRL------PVLEKLYLDNNKLSTLPP--ELGAMKNLKVLIVDNNMLV-CVPVELRECVGLVE 247 (1088)
Q Consensus 180 ~Ls~n~-l~--~lp~~l~~l------~~L~~L~L~~N~l~~lp~--~l~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~ 247 (1088)
+|++|+ ++ .+|..++.+ ++|++|+|++|+++.+|. .+.++++|++|++++|.++ .+| .+.++++|+.
T Consensus 279 ~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~ 357 (636)
T 4eco_A 279 NVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLAS 357 (636)
T ss_dssp ECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESE
T ss_pred ECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCE
Confidence 999998 88 599888776 999999999999999998 8999999999999999999 999 8999999999
Q ss_pred EEeccCCCCCCcccccCCcc-ccEEEecCCCCCCCcc-ccCC--CCCCeEEeeCCCCCCC--ccccchh-hhhcCcCCcc
Q 001385 248 LSLEHNRLVRPLLDFRAMAE-LKILRLFGNPLEFLPE-ILPL--LKLRHLSLANIRIVAD--ENLRSVN-VQIEMENNSY 320 (1088)
Q Consensus 248 L~Ls~N~l~~~~~~l~~l~~-L~~L~Ls~N~l~~l~~-l~~l--~~L~~L~L~~N~l~~~--~~l~~l~-~~~~l~~l~~ 320 (1088)
|+|++|.++.++..+..+++ |+.|+|++|.++.+|. +..+ ++|++|++++|.+++. ..+.... ....+.+|+.
T Consensus 358 L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~ 437 (636)
T 4eco_A 358 LNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSS 437 (636)
T ss_dssp EECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEE
T ss_pred EECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCE
Confidence 99999999977778999999 9999999999997774 4443 4899999999999873 3333100 0113678999
Q ss_pred ccccccchhhhHHhhh-cccCCCCcchhHHHhhhhcCCCCcc-cccccccc--------ccccceeeccCCh
Q 001385 321 FGASRHKLSAFFSLIF-RFSSCHHPLLASALAKIMQDQENRV-VVGKDENA--------VRQLISMISSDNR 382 (1088)
Q Consensus 321 l~l~~n~l~~~~~~l~-~l~~l~~l~l~~~L~~i~~l~~N~l-~ip~~~~~--------Lp~L~~L~Ls~N~ 382 (1088)
|++++|.+..++..++ .+.+++. +++.+|.+ .+|..... +++|+.|++++|.
T Consensus 438 L~Ls~N~l~~lp~~~~~~l~~L~~----------L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~ 499 (636)
T 4eco_A 438 INLSNNQISKFPKELFSTGSPLSS----------INLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNK 499 (636)
T ss_dssp EECCSSCCCSCCTHHHHTTCCCSE----------EECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSC
T ss_pred EECcCCccCcCCHHHHccCCCCCE----------EECCCCCCCCcCHHHhccccccccccCCccEEECcCCc
Confidence 9999999998887654 3676665 45677766 56655432 3399999999997
No 18
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.87 E-value=1.3e-21 Score=227.79 Aligned_cols=240 Identities=16% Similarity=0.142 Sum_probs=172.9
Q ss_pred CCCCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCccc-cccCCCCCcE
Q 001385 123 RREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPV-DLTRLPVLEK 201 (1088)
Q Consensus 123 ~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~ 201 (1088)
.+++++.|++++|.+....+..+.++++|++|+|++|. +....+..|..+++|++|+|++|.++.++. .+..+++|++
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCc-ccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 35789999999999877555567899999999999998 667777789999999999999999998764 5889999999
Q ss_pred EEccCCCCCCCchh-hcCCCCCcEEEccCCcCcccc-hhccCCCCCCEEEeccCCCCCCcccccCCccccEEEecC----
Q 001385 202 LYLDNNKLSTLPPE-LGAMKNLKVLIVDNNMLVCVP-VELRECVGLVELSLEHNRLVRPLLDFRAMAELKILRLFG---- 275 (1088)
Q Consensus 202 L~L~~N~l~~lp~~-l~~l~~L~~L~Ls~N~l~~lp-~~l~~l~~L~~L~Ls~N~l~~~~~~l~~l~~L~~L~Ls~---- 275 (1088)
|+|++|+++.+|.. +..+++|++|++++|.++.++ ..+.++++|++|++++|.+++.. +..+++|+.|++++
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l~ 199 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLS 199 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCCS
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeeccccccc
Confidence 99999999999876 589999999999999999665 46899999999999999998753 33334444444444
Q ss_pred ---------------CCCCCCccccCCCCCCeEEeeCCCCCCCccccchhhhhcCcCCccccccccchhhhH-Hhhhccc
Q 001385 276 ---------------NPLEFLPEILPLLKLRHLSLANIRIVADENLRSVNVQIEMENNSYFGASRHKLSAFF-SLIFRFS 339 (1088)
Q Consensus 276 ---------------N~l~~l~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~~~~l~~l~~l~l~~n~l~~~~-~~l~~l~ 339 (1088)
|.++.++. ...++|+.|++++|.++..+.+. .+++|+.|++++|.+.+.+ ..+..+.
T Consensus 200 ~~~~~~~L~~L~l~~n~l~~~~~-~~~~~L~~L~l~~n~l~~~~~l~------~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 272 (390)
T 3o6n_A 200 TLAIPIAVEELDASHNSINVVRG-PVNVELTILKLQHNNLTDTAWLL------NYPGLVEVDLSYNELEKIMYHPFVKMQ 272 (390)
T ss_dssp EEECCSSCSEEECCSSCCCEEEC-CCCSSCCEEECCSSCCCCCGGGG------GCTTCSEEECCSSCCCEEESGGGTTCS
T ss_pred ccCCCCcceEEECCCCeeeeccc-cccccccEEECCCCCCcccHHHc------CCCCccEEECCCCcCCCcChhHccccc
Confidence 43332221 12346777777777776654333 3667777777777776653 3444455
Q ss_pred CCCCcchhHHHhhhhcCCCCcc-ccccccccccccceeeccCCh
Q 001385 340 SCHHPLLASALAKIMQDQENRV-VVGKDENAVRQLISMISSDNR 382 (1088)
Q Consensus 340 ~l~~l~l~~~L~~i~~l~~N~l-~ip~~~~~Lp~L~~L~Ls~N~ 382 (1088)
+++. +++.+|.+ .++.....+++|+.|++++|.
T Consensus 273 ~L~~----------L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~ 306 (390)
T 3o6n_A 273 RLER----------LYISNNRLVALNLYGQPIPTLKVLDLSHNH 306 (390)
T ss_dssp SCCE----------EECCSSCCCEEECSSSCCTTCCEEECCSSC
T ss_pred cCCE----------EECCCCcCcccCcccCCCCCCCEEECCCCc
Confidence 5443 23444444 344444445555555555554
No 19
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.87 E-value=4.1e-21 Score=218.21 Aligned_cols=201 Identities=19% Similarity=0.180 Sum_probs=94.7
Q ss_pred hcCCCCCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCccc-cccCCCC
Q 001385 120 VVKRREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPV-DLTRLPV 198 (1088)
Q Consensus 120 ~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~ 198 (1088)
.+..+++|++|+|++|.+++..|..|.++++|++|+|++|. +.. +|..+. ++|++|++++|.++.++. .+..+++
T Consensus 71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~ 146 (330)
T 1xku_A 71 DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKE-LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQ 146 (330)
T ss_dssp TTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CSB-CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTT
T ss_pred hhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc-CCc-cChhhc--ccccEEECCCCcccccCHhHhcCCcc
Confidence 34445555555555555544444445555555555555554 221 222211 445555555555554433 2444555
Q ss_pred CcEEEccCCCCC---CCchhhcCCCCCcEEEccCCcCcccchhccCCCCCCEEEeccCCCCCCc-ccccCCccccEEEec
Q 001385 199 LEKLYLDNNKLS---TLPPELGAMKNLKVLIVDNNMLVCVPVELRECVGLVELSLEHNRLVRPL-LDFRAMAELKILRLF 274 (1088)
Q Consensus 199 L~~L~L~~N~l~---~lp~~l~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~~~-~~l~~l~~L~~L~Ls 274 (1088)
|++|++++|.++ ..+..+..+++|++|++++|.++.+|..+. ++|++|++++|.+++.. ..|..+++|+.|+|+
T Consensus 147 L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 224 (330)
T 1xku_A 147 MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLS 224 (330)
T ss_dssp CCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECC
T ss_pred ccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECC
Confidence 555555555543 223344455555555555555554444332 45555555555554443 234555555555555
Q ss_pred CCCCCCCc--cccCCCCCCeEEeeCCCCCCCcc-ccchhhhhcCcCCccccccccchhhhH
Q 001385 275 GNPLEFLP--EILPLLKLRHLSLANIRIVADEN-LRSVNVQIEMENNSYFGASRHKLSAFF 332 (1088)
Q Consensus 275 ~N~l~~l~--~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~~~~l~~l~~l~l~~n~l~~~~ 332 (1088)
+|.++.++ .+..+++|++|+|++|.++.++. +. .+++|+.+++++|.++.++
T Consensus 225 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~------~l~~L~~L~l~~N~i~~~~ 279 (330)
T 1xku_A 225 FNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLA------DHKYIQVVYLHNNNISAIG 279 (330)
T ss_dssp SSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTT------TCSSCCEEECCSSCCCCCC
T ss_pred CCcCceeChhhccCCCCCCEEECCCCcCccCChhhc------cCCCcCEEECCCCcCCccC
Confidence 55555222 34445555555555555544221 11 2445555555555554443
No 20
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.87 E-value=2.2e-21 Score=230.51 Aligned_cols=114 Identities=17% Similarity=0.212 Sum_probs=60.9
Q ss_pred hhcCCCCCccEEEeeCCCCCCCC-ccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCC-cccc--cc
Q 001385 119 RVVKRREPLRAVVLTKGVGSGHL-SDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSA-LPVD--LT 194 (1088)
Q Consensus 119 ~~~~~l~~L~~L~Ls~n~i~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~-lp~~--l~ 194 (1088)
..+..+++|++|+|++|.+.+.+ +..|.++++|++|+|++|. +....+..|.++++|++|+|++|.++. ++.. +.
T Consensus 48 ~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 126 (455)
T 3v47_A 48 TSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ-FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFK 126 (455)
T ss_dssp TTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT-TCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTT
T ss_pred hHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc-cCccChhhccCcccCCEEeCCCCCCCccccCccccc
Confidence 44555555666666655554333 3445555556666666555 444445555555555566555555553 2222 55
Q ss_pred CCCCCcEEEccCCCCCCC-chh-hcCCCCCcEEEccCCcCc
Q 001385 195 RLPVLEKLYLDNNKLSTL-PPE-LGAMKNLKVLIVDNNMLV 233 (1088)
Q Consensus 195 ~l~~L~~L~L~~N~l~~l-p~~-l~~l~~L~~L~Ls~N~l~ 233 (1088)
.+++|++|+|++|+++.+ |.. +.++++|++|++++|.++
T Consensus 127 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 127 PLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp TCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred CcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence 555555555555555533 332 455555555555555554
No 21
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.86 E-value=6.5e-22 Score=227.02 Aligned_cols=248 Identities=16% Similarity=0.111 Sum_probs=202.7
Q ss_pred CCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCcccc-ccCCCCCcEEE
Q 001385 125 EPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVD-LTRLPVLEKLY 203 (1088)
Q Consensus 125 ~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~ 203 (1088)
++|++|+|++|.+++..+..|.++++|++|+|++|. +....+..|.++++|++|+|++|.++.+|.. +..+++|++|+
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG-INTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLN 130 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEE
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc-cCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEE
Confidence 589999999999988666689999999999999998 6777778899999999999999999999876 88999999999
Q ss_pred ccCCCCCCCch--hhcCCCCCcEEEccCC-cCccc-chhccCCCCCCEEEeccCCCCCCc-ccccCCccccEEEecCCCC
Q 001385 204 LDNNKLSTLPP--ELGAMKNLKVLIVDNN-MLVCV-PVELRECVGLVELSLEHNRLVRPL-LDFRAMAELKILRLFGNPL 278 (1088)
Q Consensus 204 L~~N~l~~lp~--~l~~l~~L~~L~Ls~N-~l~~l-p~~l~~l~~L~~L~Ls~N~l~~~~-~~l~~l~~L~~L~Ls~N~l 278 (1088)
|++|+++.+|. .+..+++|++|++++| .++.+ +..+.++++|++|++++|.+++.. ..+..+++|++|++++|.+
T Consensus 131 L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 210 (353)
T 2z80_A 131 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH 210 (353)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS
T ss_pred CCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc
Confidence 99999998886 6889999999999999 57766 457899999999999999998875 4799999999999999999
Q ss_pred CCCcc--ccCCCCCCeEEeeCCCCCCCc--cccchhhhhcCcCC-----ccccccccchhhhHHhhhcccCCCCcchhHH
Q 001385 279 EFLPE--ILPLLKLRHLSLANIRIVADE--NLRSVNVQIEMENN-----SYFGASRHKLSAFFSLIFRFSSCHHPLLASA 349 (1088)
Q Consensus 279 ~~l~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~~~~l~~l-----~~l~l~~n~l~~~~~~l~~l~~l~~l~l~~~ 349 (1088)
+.++. +..+++|+.|++++|.++... .+... .....+ +.+.+.++.+..++..+..+.+++.
T Consensus 211 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~---~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~------ 281 (353)
T 2z80_A 211 ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTG---ETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLE------ 281 (353)
T ss_dssp TTHHHHHHHHTTTEEEEEEESCBCTTCCCC---------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCE------
T ss_pred ccchhhhhhhcccccEEECCCCccccccccccccc---cccchhhccccccccccCcchhhhHHHHhcccCCCE------
Confidence 87664 446899999999999998742 22111 112333 3344455555556667777777765
Q ss_pred HhhhhcCCCCcc-cccccc-ccccccceeeccCChhhhh
Q 001385 350 LAKIMQDQENRV-VVGKDE-NAVRQLISMISSDNRHVVE 386 (1088)
Q Consensus 350 L~~i~~l~~N~l-~ip~~~-~~Lp~L~~L~Ls~N~~v~~ 386 (1088)
+++++|.+ .+|.++ +.+++|+.|++++|+..++
T Consensus 282 ----L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 282 ----LEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp ----EECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred ----EECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 46778877 777775 8899999999999985443
No 22
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.86 E-value=8e-21 Score=215.76 Aligned_cols=239 Identities=14% Similarity=0.106 Sum_probs=201.3
Q ss_pred CCCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCccccccCCCCCcEEE
Q 001385 124 REPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPVLEKLY 203 (1088)
Q Consensus 124 l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~ 203 (1088)
.++|+.|+|++|.+++..+..|.++++|++|+|++|. +....|..|..+++|++|+|++|.++.+|..+. ++|++|+
T Consensus 51 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~ 127 (330)
T 1xku_A 51 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK-ISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELR 127 (330)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEE
T ss_pred CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCc-CCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEE
Confidence 3689999999999998777789999999999999999 677778899999999999999999999998765 7999999
Q ss_pred ccCCCCCCCc-hhhcCCCCCcEEEccCCcCc---ccchhccCCCCCCEEEeccCCCCCCcccccCCccccEEEecCCCCC
Q 001385 204 LDNNKLSTLP-PELGAMKNLKVLIVDNNMLV---CVPVELRECVGLVELSLEHNRLVRPLLDFRAMAELKILRLFGNPLE 279 (1088)
Q Consensus 204 L~~N~l~~lp-~~l~~l~~L~~L~Ls~N~l~---~lp~~l~~l~~L~~L~Ls~N~l~~~~~~l~~l~~L~~L~Ls~N~l~ 279 (1088)
+++|.++.++ ..+..+++|++|++++|.++ ..+..+.++++|++|++++|.++.++..+. ++|+.|++++|.++
T Consensus 128 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~ 205 (330)
T 1xku_A 128 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKIT 205 (330)
T ss_dssp CCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCC
T ss_pred CCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCC
Confidence 9999999666 45899999999999999997 456678999999999999999998776543 89999999999999
Q ss_pred CC--ccccCCCCCCeEEeeCCCCCCCc--cccchhhhhcCcCCccccccccchhhhHHhhhcccCCCCcchhHHHhhhhc
Q 001385 280 FL--PEILPLLKLRHLSLANIRIVADE--NLRSVNVQIEMENNSYFGASRHKLSAFFSLIFRFSSCHHPLLASALAKIMQ 355 (1088)
Q Consensus 280 ~l--~~l~~l~~L~~L~L~~N~l~~~~--~l~~l~~~~~l~~l~~l~l~~n~l~~~~~~l~~l~~l~~l~l~~~L~~i~~ 355 (1088)
.+ ..+..+++|++|+|++|.++... .+. .+++|+.|++++|.+..+|..+..+.+++. ++
T Consensus 206 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~------~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~----------L~ 269 (330)
T 1xku_A 206 KVDAASLKGLNNLAKLGLSFNSISAVDNGSLA------NTPHLRELHLNNNKLVKVPGGLADHKYIQV----------VY 269 (330)
T ss_dssp EECTGGGTTCTTCCEEECCSSCCCEECTTTGG------GSTTCCEEECCSSCCSSCCTTTTTCSSCCE----------EE
T ss_pred ccCHHHhcCCCCCCEEECCCCcCceeChhhcc------CCCCCCEEECCCCcCccCChhhccCCCcCE----------EE
Confidence 43 46889999999999999998743 233 488999999999999988877777777765 35
Q ss_pred CCCCcc-ccccc-c------ccccccceeeccCChh
Q 001385 356 DQENRV-VVGKD-E------NAVRQLISMISSDNRH 383 (1088)
Q Consensus 356 l~~N~l-~ip~~-~------~~Lp~L~~L~Ls~N~~ 383 (1088)
+.+|.+ .++.. + ...+.|..|++++|+.
T Consensus 270 l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 270 LHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp CCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred CCCCcCCccChhhcCCcccccccccccceEeecCcc
Confidence 666666 33322 1 1357888999999984
No 23
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.86 E-value=5.6e-21 Score=228.54 Aligned_cols=271 Identities=16% Similarity=0.112 Sum_probs=220.5
Q ss_pred CCceEEeccCCCCCcccccccccccchhhcCCCCCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCcccccc
Q 001385 92 EDTVVVELAPQEEGDVATDAANVGVEMRVVKRREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCD 171 (1088)
Q Consensus 92 ~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~ 171 (1088)
.....++++.... ..+....|.++++|++|+|++|.++...+..|.++++|++|+|++|. +....+..|.
T Consensus 56 ~~L~~L~L~~n~i---------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~ 125 (477)
T 2id5_A 56 PHLEELELNENIV---------SAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENK-IVILLDYMFQ 125 (477)
T ss_dssp TTCCEEECTTSCC---------CEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSC-CCEECTTTTT
T ss_pred CCCCEEECCCCcc---------CEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCc-cccCChhHcc
Confidence 3444777755442 12334678999999999999999988666778999999999999999 6777788899
Q ss_pred CCCCccEEEccCCCCCCcc-ccccCCCCCcEEEccCCCCCCCch-hhcCCCCCcEEEccCCcCcccch-hccCCCCCCEE
Q 001385 172 HWKTVTAVSLCGLGLSALP-VDLTRLPVLEKLYLDNNKLSTLPP-ELGAMKNLKVLIVDNNMLVCVPV-ELRECVGLVEL 248 (1088)
Q Consensus 172 ~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~~N~l~~lp~-~l~~l~~L~~L~Ls~N~l~~lp~-~l~~l~~L~~L 248 (1088)
.+++|++|+|++|.++.++ ..+..+++|++|+|++|+++.++. .+..+++|+.|+|++|.+..++. .+..+++|+.|
T Consensus 126 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 205 (477)
T 2id5_A 126 DLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVL 205 (477)
T ss_dssp TCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEE
T ss_pred ccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCccccee
Confidence 9999999999999999664 578899999999999999998774 58999999999999999996654 78999999999
Q ss_pred EeccCCCCCCc-ccccCCccccEEEecCCCCCCCc--cccCCCCCCeEEeeCCCCCCCccccchhhhhcCcCCccccccc
Q 001385 249 SLEHNRLVRPL-LDFRAMAELKILRLFGNPLEFLP--EILPLLKLRHLSLANIRIVADENLRSVNVQIEMENNSYFGASR 325 (1088)
Q Consensus 249 ~Ls~N~l~~~~-~~l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~L~~N~l~~~~~l~~l~~~~~l~~l~~l~l~~ 325 (1088)
++++|.+.+.. +.+....+|+.|+|++|.++.++ .+..+++|+.|+|++|.++..+.-. +..+++|+.|++++
T Consensus 206 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~ 281 (477)
T 2id5_A 206 EISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSM----LHELLRLQEIQLVG 281 (477)
T ss_dssp EEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTS----CTTCTTCCEEECCS
T ss_pred eCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhh----ccccccCCEEECCC
Confidence 99998876544 45555669999999999999777 5789999999999999998743211 22488999999999
Q ss_pred cchhhhHH-hhhcccCCCCcchhHHHhhhhcCCCCcc-cccc-ccccccccceeeccCChhhhh
Q 001385 326 HKLSAFFS-LIFRFSSCHHPLLASALAKIMQDQENRV-VVGK-DENAVRQLISMISSDNRHVVE 386 (1088)
Q Consensus 326 n~l~~~~~-~l~~l~~l~~l~l~~~L~~i~~l~~N~l-~ip~-~~~~Lp~L~~L~Ls~N~~v~~ 386 (1088)
|.+....+ .+..+.+|+. +++++|.+ .++. .+..+++|+.|++++|+..++
T Consensus 282 n~l~~~~~~~~~~l~~L~~----------L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 282 GQLAVVEPYAFRGLNYLRV----------LNVSGNQLTTLEESVFHSVGNLETLILDSNPLACD 335 (477)
T ss_dssp SCCSEECTTTBTTCTTCCE----------EECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred CccceECHHHhcCcccCCE----------EECCCCcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence 99988754 4556666654 46777877 4444 458899999999999995443
No 24
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.86 E-value=2.5e-21 Score=229.97 Aligned_cols=136 Identities=15% Similarity=0.133 Sum_probs=120.4
Q ss_pred CCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCc-cccccCCCCCcEEE
Q 001385 125 EPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSAL-PVDLTRLPVLEKLY 203 (1088)
Q Consensus 125 ~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~ 203 (1088)
++|++|+|++|.+++..|..|.++++|++|+|++|.+.....+..|..+++|++|+|++|.++.+ |..+.++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 78999999999999888899999999999999999843355577899999999999999999966 67899999999999
Q ss_pred ccCCCCCC-Cchh--hcCCCCCcEEEccCCcCccc-chh-ccCCCCCCEEEeccCCCCCCcc
Q 001385 204 LDNNKLST-LPPE--LGAMKNLKVLIVDNNMLVCV-PVE-LRECVGLVELSLEHNRLVRPLL 260 (1088)
Q Consensus 204 L~~N~l~~-lp~~--l~~l~~L~~L~Ls~N~l~~l-p~~-l~~l~~L~~L~Ls~N~l~~~~~ 260 (1088)
|++|+++. ++.. +..+++|++|+|++|.++.+ |.. +.++++|++|++++|.+++..+
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 171 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICE 171 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccCh
Confidence 99999984 4444 88999999999999999966 555 7899999999999999987653
No 25
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.86 E-value=6.4e-21 Score=227.34 Aligned_cols=238 Identities=17% Similarity=0.197 Sum_probs=145.8
Q ss_pred hhcCCCCCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCccccccCCCC
Q 001385 119 RVVKRREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPV 198 (1088)
Q Consensus 119 ~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~ 198 (1088)
..+..+++|++|+|++|.+++.. . +.++++|++|+|++|. +....+ +..+++|++|+|++|.++.++. +..+++
T Consensus 62 ~~~~~l~~L~~L~Ls~n~l~~~~-~-~~~l~~L~~L~l~~n~-l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~ 135 (466)
T 1o6v_A 62 DGVEYLNNLTQINFSNNQLTDIT-P-LKNLTKLVDILMNNNQ-IADITP--LANLTNLTGLTLFNNQITDIDP-LKNLTN 135 (466)
T ss_dssp TTGGGCTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTT
T ss_pred cchhhhcCCCEEECCCCccCCch-h-hhccccCCEEECCCCc-cccChh--hcCCCCCCEEECCCCCCCCChH-HcCCCC
Confidence 34677889999999999887743 3 8889999999999998 444444 7888999999999999888875 888889
Q ss_pred CcEEEccCCCCCCCchhhcCCC---------------------CCcEEEccCCcCcccchhccCCCCCCEEEeccCCCCC
Q 001385 199 LEKLYLDNNKLSTLPPELGAMK---------------------NLKVLIVDNNMLVCVPVELRECVGLVELSLEHNRLVR 257 (1088)
Q Consensus 199 L~~L~L~~N~l~~lp~~l~~l~---------------------~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~ 257 (1088)
|++|++++|.++.++ .+..++ +|++|++++|.++.++ .+.++++|++|++++|.+.+
T Consensus 136 L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~ 213 (466)
T 1o6v_A 136 LNRLELSSNTISDIS-ALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQISD 213 (466)
T ss_dssp CSEEEEEEEEECCCG-GGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCC
T ss_pred CCEEECCCCccCCCh-hhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCCh-hhccCCCCCEEEecCCcccc
Confidence 999999988887665 344444 4555555555554443 24445555555555555544
Q ss_pred CcccccCCccccEEEecCCCCCCCccccCCCCCCeEEeeCCCCCCCccccchhhhhcCcCCccccccccchhhhHHhhhc
Q 001385 258 PLLDFRAMAELKILRLFGNPLEFLPEILPLLKLRHLSLANIRIVADENLRSVNVQIEMENNSYFGASRHKLSAFFSLIFR 337 (1088)
Q Consensus 258 ~~~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~~~~l~~l~~l~l~~n~l~~~~~~l~~ 337 (1088)
..+ ++.+++|+.|++++|.++.++.+..+++|+.|++++|.++....+. .+++|+.|++++|.+...++ +..
T Consensus 214 ~~~-~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~------~l~~L~~L~l~~n~l~~~~~-~~~ 285 (466)
T 1o6v_A 214 ITP-LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLS------GLTKLTELKLGANQISNISP-LAG 285 (466)
T ss_dssp CGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGT------TCTTCSEEECCSSCCCCCGG-GTT
T ss_pred ccc-ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchhhh------cCCCCCEEECCCCccCcccc-ccC
Confidence 432 4445555555555555554455555555555555555555443322 24555555555555554443 333
Q ss_pred ccCCCCcchhHHHhhhhcCCCCccccccccccccccceeeccCCh
Q 001385 338 FSSCHHPLLASALAKIMQDQENRVVVGKDENAVRQLISMISSDNR 382 (1088)
Q Consensus 338 l~~l~~l~l~~~L~~i~~l~~N~l~ip~~~~~Lp~L~~L~Ls~N~ 382 (1088)
+.+++. +++.+|.+.-...+..+++|+.|++++|.
T Consensus 286 l~~L~~----------L~L~~n~l~~~~~~~~l~~L~~L~L~~n~ 320 (466)
T 1o6v_A 286 LTALTN----------LELNENQLEDISPISNLKNLTYLTLYFNN 320 (466)
T ss_dssp CTTCSE----------EECCSSCCSCCGGGGGCTTCSEEECCSSC
T ss_pred CCccCe----------EEcCCCcccCchhhcCCCCCCEEECcCCc
Confidence 333332 23445554211225566666666666665
No 26
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.86 E-value=6.5e-21 Score=216.75 Aligned_cols=202 Identities=19% Similarity=0.186 Sum_probs=131.0
Q ss_pred hhcCCCCCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCccc-cccCCC
Q 001385 119 RVVKRREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPV-DLTRLP 197 (1088)
Q Consensus 119 ~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~-~l~~l~ 197 (1088)
..+..+++|++|+|++|.+++..|..|.++++|++|+|++|. +.. +|..+. ++|++|+|++|.++.+|. .+..++
T Consensus 72 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~ 147 (332)
T 2ft3_A 72 DDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH-LVE-IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLR 147 (332)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSC-CCS-CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCS
T ss_pred hHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCc-CCc-cCcccc--ccCCEEECCCCccCccCHhHhCCCc
Confidence 456667777777777777766666667777777777777776 332 333322 567777777777776654 356677
Q ss_pred CCcEEEccCCCCC---CCchhhcCCCCCcEEEccCCcCcccchhccCCCCCCEEEeccCCCCCCcc-cccCCccccEEEe
Q 001385 198 VLEKLYLDNNKLS---TLPPELGAMKNLKVLIVDNNMLVCVPVELRECVGLVELSLEHNRLVRPLL-DFRAMAELKILRL 273 (1088)
Q Consensus 198 ~L~~L~L~~N~l~---~lp~~l~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~~~~-~l~~l~~L~~L~L 273 (1088)
+|++|++++|.++ ..+..+..+ +|++|++++|.++.+|..+. ++|++|++++|.+++.++ .|..+++|+.|+|
T Consensus 148 ~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L 224 (332)
T 2ft3_A 148 NMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGL 224 (332)
T ss_dssp SCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBC
T ss_pred cCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 7777777777765 334455555 67777777777776665544 567777777777776653 5677777777777
Q ss_pred cCCCCCCCc--cccCCCCCCeEEeeCCCCCCCcc-ccchhhhhcCcCCccccccccchhhhHH
Q 001385 274 FGNPLEFLP--EILPLLKLRHLSLANIRIVADEN-LRSVNVQIEMENNSYFGASRHKLSAFFS 333 (1088)
Q Consensus 274 s~N~l~~l~--~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~~~~l~~l~~l~l~~n~l~~~~~ 333 (1088)
++|.++.++ .+..+++|+.|+|++|.++.++. +. .+++|+.+++++|.++.++.
T Consensus 225 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~------~l~~L~~L~l~~N~l~~~~~ 281 (332)
T 2ft3_A 225 GHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLP------DLKLLQVVYLHTNNITKVGV 281 (332)
T ss_dssp CSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGG------GCTTCCEEECCSSCCCBCCT
T ss_pred CCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhh------cCccCCEEECCCCCCCccCh
Confidence 777777443 46677777777777777765432 22 36677777777777766553
No 27
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.86 E-value=3.9e-21 Score=218.58 Aligned_cols=238 Identities=17% Similarity=0.145 Sum_probs=200.1
Q ss_pred CCCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCccccccCCCCCcEEE
Q 001385 124 REPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPVLEKLY 203 (1088)
Q Consensus 124 l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~ 203 (1088)
.++|+.|+|++|.+.+..+..|.++++|++|+|++|. +....+..|..+++|++|+|++|.++.+|..+. ++|++|+
T Consensus 53 ~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~ 129 (332)
T 2ft3_A 53 SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK-ISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELR 129 (332)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEE
T ss_pred CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCc-cCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEE
Confidence 3689999999999998777889999999999999998 677778899999999999999999999998776 8999999
Q ss_pred ccCCCCCCCch-hhcCCCCCcEEEccCCcCc---ccchhccCCCCCCEEEeccCCCCCCcccccCCccccEEEecCCCCC
Q 001385 204 LDNNKLSTLPP-ELGAMKNLKVLIVDNNMLV---CVPVELRECVGLVELSLEHNRLVRPLLDFRAMAELKILRLFGNPLE 279 (1088)
Q Consensus 204 L~~N~l~~lp~-~l~~l~~L~~L~Ls~N~l~---~lp~~l~~l~~L~~L~Ls~N~l~~~~~~l~~l~~L~~L~Ls~N~l~ 279 (1088)
+++|+++.+|. .+..+++|++|++++|.++ ..+..+..+ +|+.|++++|.+++++..+. ++|+.|+|++|.++
T Consensus 130 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~ 206 (332)
T 2ft3_A 130 IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQ 206 (332)
T ss_dssp CCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCC
T ss_pred CCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCcccc--CCCCEEECCCCcCC
Confidence 99999998875 4899999999999999997 445667777 99999999999998876553 79999999999999
Q ss_pred CCc--cccCCCCCCeEEeeCCCCCCCcc--ccchhhhhcCcCCccccccccchhhhHHhhhcccCCCCcchhHHHhhhhc
Q 001385 280 FLP--EILPLLKLRHLSLANIRIVADEN--LRSVNVQIEMENNSYFGASRHKLSAFFSLIFRFSSCHHPLLASALAKIMQ 355 (1088)
Q Consensus 280 ~l~--~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~~~~l~~l~~l~l~~n~l~~~~~~l~~l~~l~~l~l~~~L~~i~~ 355 (1088)
.++ .+..+++|++|+|++|.++.... +. .+++|+.|++++|.++.+|..+..+.+++. ++
T Consensus 207 ~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~------~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~----------L~ 270 (332)
T 2ft3_A 207 AIELEDLLRYSKLYRLGLGHNQIRMIENGSLS------FLPTLRELHLDNNKLSRVPAGLPDLKLLQV----------VY 270 (332)
T ss_dssp CCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGG------GCTTCCEEECCSSCCCBCCTTGGGCTTCCE----------EE
T ss_pred ccCHHHhcCCCCCCEEECCCCcCCcCChhHhh------CCCCCCEEECCCCcCeecChhhhcCccCCE----------EE
Confidence 554 68899999999999999998532 33 488999999999999988877777777765 45
Q ss_pred CCCCcc-ccccc-cc------cccccceeeccCChh
Q 001385 356 DQENRV-VVGKD-EN------AVRQLISMISSDNRH 383 (1088)
Q Consensus 356 l~~N~l-~ip~~-~~------~Lp~L~~L~Ls~N~~ 383 (1088)
+.+|.+ .++.. +. ..+.|..|++++|+.
T Consensus 271 l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~ 306 (332)
T 2ft3_A 271 LHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPV 306 (332)
T ss_dssp CCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSS
T ss_pred CCCCCCCccChhHccccccccccccccceEeecCcc
Confidence 666666 33322 22 257788999999983
No 28
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.86 E-value=5.6e-21 Score=216.82 Aligned_cols=203 Identities=21% Similarity=0.190 Sum_probs=177.0
Q ss_pred hhcCCCCCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCC-CCccccccC--
Q 001385 119 RVVKRREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGL-SALPVDLTR-- 195 (1088)
Q Consensus 119 ~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l-~~lp~~l~~-- 195 (1088)
..+..+++|++|+|++|.++ .+|..+.++++|++|+|++|. +. .+|..+..+++|++|+|++|.+ ..+|..+..
T Consensus 98 ~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~-l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~ 174 (328)
T 4fcg_A 98 DQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNP-LR-ALPASIASLNRLRELSIRACPELTELPEPLASTD 174 (328)
T ss_dssp SCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCC-CC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC
T ss_pred hhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCc-cc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhcc
Confidence 44667999999999999998 689999999999999999998 44 6788899999999999999764 478876654
Q ss_pred -------CCCCcEEEccCCCCCCCchhhcCCCCCcEEEccCCcCcccchhccCCCCCCEEEeccCCCCCCcc-cccCCcc
Q 001385 196 -------LPVLEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVELRECVGLVELSLEHNRLVRPLL-DFRAMAE 267 (1088)
Q Consensus 196 -------l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~~~~-~l~~l~~ 267 (1088)
+++|++|+|++|+++.+|..+..+++|++|+|++|.++.+|..+.++++|++|+|++|.+.+..+ .+..+++
T Consensus 175 ~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~ 254 (328)
T 4fcg_A 175 ASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAP 254 (328)
T ss_dssp -CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCC
T ss_pred chhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999887665 6999999
Q ss_pred ccEEEecCCCCC-CCc-cccCCCCCCeEEeeCCCCCC--CccccchhhhhcCcCCccccccccchhh
Q 001385 268 LKILRLFGNPLE-FLP-EILPLLKLRHLSLANIRIVA--DENLRSVNVQIEMENNSYFGASRHKLSA 330 (1088)
Q Consensus 268 L~~L~Ls~N~l~-~l~-~l~~l~~L~~L~L~~N~l~~--~~~l~~l~~~~~l~~l~~l~l~~n~l~~ 330 (1088)
|+.|+|++|.+. .+| .+..+++|++|+|++|++.+ +..+. .+++++.+++..+.+..
T Consensus 255 L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~------~L~~L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 255 LKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA------QLPANCIILVPPHLQAQ 315 (328)
T ss_dssp CCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGG------GSCTTCEEECCGGGSCC
T ss_pred CCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHh------hccCceEEeCCHHHHHH
Confidence 999999998776 555 68899999999999998876 33344 47888888887766544
No 29
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.86 E-value=4.4e-21 Score=227.81 Aligned_cols=225 Identities=17% Similarity=0.181 Sum_probs=180.8
Q ss_pred CCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCcccc-ccCCCCCcEEE
Q 001385 125 EPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVD-LTRLPVLEKLY 203 (1088)
Q Consensus 125 ~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~ 203 (1088)
++|+.|+|++|+|++..+..|.++++|++|+|++|. +....+..|.++++|++|+|++|.|+.+|.. +..+++|++|+
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS-IRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCc-cCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence 578999999999988778889999999999999998 6677778888999999999999999988764 77899999999
Q ss_pred ccCCCCCCCch-hhcCCCCCcEEEccC-CcCcccch-hccCCCCCCEEEeccCCCCCCcccccCCccccEEEecCCCCCC
Q 001385 204 LDNNKLSTLPP-ELGAMKNLKVLIVDN-NMLVCVPV-ELRECVGLVELSLEHNRLVRPLLDFRAMAELKILRLFGNPLEF 280 (1088)
Q Consensus 204 L~~N~l~~lp~-~l~~l~~L~~L~Ls~-N~l~~lp~-~l~~l~~L~~L~Ls~N~l~~~~~~l~~l~~L~~L~Ls~N~l~~ 280 (1088)
|++|+++.+|. .|.++++|+.|++++ |.+..++. .+.++++|+.|+|++|.++++ +.+..+++|+.|+|++|.++.
T Consensus 154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~ 232 (452)
T 3zyi_A 154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-PNLTPLVGLEELEMSGNHFPE 232 (452)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-CCCTTCTTCCEEECTTSCCSE
T ss_pred CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-ccccccccccEEECcCCcCcc
Confidence 99999987664 678899999999998 56666665 578889999999999999876 468888999999999999983
Q ss_pred C-c-cccCCCCCCeEEeeCCCCCCCccccchhhhhcCcCCccccccccchhhhHHhhhcccCCCCcchhHHHhhhhcCCC
Q 001385 281 L-P-EILPLLKLRHLSLANIRIVADENLRSVNVQIEMENNSYFGASRHKLSAFFSLIFRFSSCHHPLLASALAKIMQDQE 358 (1088)
Q Consensus 281 l-~-~l~~l~~L~~L~L~~N~l~~~~~l~~l~~~~~l~~l~~l~l~~n~l~~~~~~l~~l~~l~~l~l~~~L~~i~~l~~ 358 (1088)
+ + .+..+++|+.|+|++|.++....-. +..+++|+.|++++|.++.++
T Consensus 233 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~-------------------------- 282 (452)
T 3zyi_A 233 IRPGSFHGLSSLKKLWVMNSQVSLIERNA----FDGLASLVELNLAHNNLSSLP-------------------------- 282 (452)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCCEECTTT----TTTCTTCCEEECCSSCCSCCC--------------------------
T ss_pred cCcccccCccCCCEEEeCCCcCceECHHH----hcCCCCCCEEECCCCcCCccC--------------------------
Confidence 3 3 6788899999999999888632111 224778888888888765422
Q ss_pred CccccccccccccccceeeccCChhhhh
Q 001385 359 NRVVVGKDENAVRQLISMISSDNRHVVE 386 (1088)
Q Consensus 359 N~l~ip~~~~~Lp~L~~L~Ls~N~~v~~ 386 (1088)
+..+..+++|+.|++++|+..++
T Consensus 283 -----~~~~~~l~~L~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 283 -----HDLFTPLRYLVELHLHHNPWNCD 305 (452)
T ss_dssp -----TTSSTTCTTCCEEECCSSCEECS
T ss_pred -----hHHhccccCCCEEEccCCCcCCC
Confidence 12245688999999999985443
No 30
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.85 E-value=1e-20 Score=233.26 Aligned_cols=270 Identities=17% Similarity=0.175 Sum_probs=177.2
Q ss_pred CCceEEeccCCCCCcccccccccccchhhcCCCCCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCcccccc
Q 001385 92 EDTVVVELAPQEEGDVATDAANVGVEMRVVKRREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCD 171 (1088)
Q Consensus 92 ~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~ 171 (1088)
.....++++.... ..+....|.++++|++|+|++|.+++..|..|.++++|++|+|++|. +....|..|.
T Consensus 32 ~~l~~L~Ls~n~l---------~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~ 101 (606)
T 3vq2_A 32 SSTKNIDLSFNPL---------KILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP-IQSFSPGSFS 101 (606)
T ss_dssp TTCCEEECTTSCC---------CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCCCCTTSST
T ss_pred CCcCEEECCCCCc---------CEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCc-ccccChhhcC
Confidence 3445666654442 12333567788888888888888887777778888888888888887 6666777888
Q ss_pred CCCCccEEEccCCCCCCcc-ccccCCCCCcEEEccCCCCC--CCchhhcCCCCCcEEEccCCcCcccc-hhccCC-----
Q 001385 172 HWKTVTAVSLCGLGLSALP-VDLTRLPVLEKLYLDNNKLS--TLPPELGAMKNLKVLIVDNNMLVCVP-VELREC----- 242 (1088)
Q Consensus 172 ~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~~N~l~--~lp~~l~~l~~L~~L~Ls~N~l~~lp-~~l~~l----- 242 (1088)
++++|++|+|++|.++.++ ..+.++++|++|+|++|.++ .+|..+.++++|++|++++|.++.++ ..+..+
T Consensus 102 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 181 (606)
T 3vq2_A 102 GLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQ 181 (606)
T ss_dssp TCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTT
T ss_pred CcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhcccc
Confidence 8888888888888888766 56788888888888888887 46778888888888888888777442 222222
Q ss_pred ----------------------CCCCEEEeccCCCC--------------------------------------------
Q 001385 243 ----------------------VGLVELSLEHNRLV-------------------------------------------- 256 (1088)
Q Consensus 243 ----------------------~~L~~L~Ls~N~l~-------------------------------------------- 256 (1088)
.+|+.|++++|.+.
T Consensus 182 ~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l 261 (606)
T 3vq2_A 182 VNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV 261 (606)
T ss_dssp CCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGS
T ss_pred ccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhc
Confidence 24555555555432
Q ss_pred --------------CCcccccCCccccEEEecCCCCCCCccccCCCCCCeEEeeCCCCCCCccccch------h------
Q 001385 257 --------------RPLLDFRAMAELKILRLFGNPLEFLPEILPLLKLRHLSLANIRIVADENLRSV------N------ 310 (1088)
Q Consensus 257 --------------~~~~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~L~~N~l~~~~~l~~l------~------ 310 (1088)
+..+.+..+++|+.|++++|.++.++.+..+++|++|++++|.+..++.+ .+ .
T Consensus 262 ~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp~~-~l~~L~~L~l~~n~~ 340 (606)
T 3vq2_A 262 TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTL-DLPFLKSLTLTMNKG 340 (606)
T ss_dssp EEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCCCC-CCSSCCEEEEESCSS
T ss_pred cHhheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccCcccccC-CCCccceeeccCCcC
Confidence 00112344567777777777777666777777777777777777554432 10 0
Q ss_pred ----hhhcCcCCccccccccchhhh---HHhhhcccCCCCcchhHHHhhhhcCCCCcc-ccccccccccccceeeccCCh
Q 001385 311 ----VQIEMENNSYFGASRHKLSAF---FSLIFRFSSCHHPLLASALAKIMQDQENRV-VVGKDENAVRQLISMISSDNR 382 (1088)
Q Consensus 311 ----~~~~l~~l~~l~l~~n~l~~~---~~~l~~l~~l~~l~l~~~L~~i~~l~~N~l-~ip~~~~~Lp~L~~L~Ls~N~ 382 (1088)
....+++|+.+++++|.+.+. +..+..+.+++. +++.+|.+ .+|..+..+++|+.|++++|.
T Consensus 341 ~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~----------L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~ 410 (606)
T 3vq2_A 341 SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRH----------LDLSFNGAIIMSANFMGLEELQHLDFQHST 410 (606)
T ss_dssp CEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCE----------EECCSCSEEEECCCCTTCTTCCEEECTTSE
T ss_pred ccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccE----------eECCCCccccchhhccCCCCCCeeECCCCc
Confidence 011345566666666665554 334444444443 34556655 556667777777777777776
No 31
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=3.1e-21 Score=237.30 Aligned_cols=249 Identities=15% Similarity=0.157 Sum_probs=171.4
Q ss_pred CCCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCccc-cccCCCCCcEE
Q 001385 124 REPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPV-DLTRLPVLEKL 202 (1088)
Q Consensus 124 l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L 202 (1088)
+.+++.|++++|.+....+..+.++++|++|+|++|. +....+..|..+++|++|+|++|.|+.+|. .+..+++|++|
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCC-CCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 5789999999999987666678899999999999999 677777899999999999999999998776 46899999999
Q ss_pred EccCCCCCCCchh-hcCCCCCcEEEccCCcCcccc-hhccCCCCCCEEEeccCCCCCCcccccCCccccEEEecCC----
Q 001385 203 YLDNNKLSTLPPE-LGAMKNLKVLIVDNNMLVCVP-VELRECVGLVELSLEHNRLVRPLLDFRAMAELKILRLFGN---- 276 (1088)
Q Consensus 203 ~L~~N~l~~lp~~-l~~l~~L~~L~Ls~N~l~~lp-~~l~~l~~L~~L~Ls~N~l~~~~~~l~~l~~L~~L~Ls~N---- 276 (1088)
+|++|.++.+|.. |..+++|++|+|++|.++.++ ..+.++++|+.|+|++|.+++.+ +..+++|+.|++++|
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~ 206 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLST 206 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCSE
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCcccc
Confidence 9999999988876 589999999999999999665 46899999999999999998764 222333333333333
Q ss_pred ---------------CCCCCccccCCCCCCeEEeeCCCCCCCccccchhhhhcCcCCccccccccchhhhHH-hhhcccC
Q 001385 277 ---------------PLEFLPEILPLLKLRHLSLANIRIVADENLRSVNVQIEMENNSYFGASRHKLSAFFS-LIFRFSS 340 (1088)
Q Consensus 277 ---------------~l~~l~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~~~~l~~l~~l~l~~n~l~~~~~-~l~~l~~ 340 (1088)
.++.++.. ..++|+.|+|++|.+++++.+. .+++|+.|++++|.+.+.++ .+..+.+
T Consensus 207 l~~~~~L~~L~ls~n~l~~~~~~-~~~~L~~L~L~~n~l~~~~~l~------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 279 (597)
T 3oja_B 207 LAIPIAVEELDASHNSINVVRGP-VNVELTILKLQHNNLTDTAWLL------NYPGLVEVDLSYNELEKIMYHPFVKMQR 279 (597)
T ss_dssp EECCTTCSEEECCSSCCCEEECS-CCSCCCEEECCSSCCCCCGGGG------GCTTCSEEECCSSCCCEEESGGGTTCSS
T ss_pred ccCCchhheeeccCCcccccccc-cCCCCCEEECCCCCCCCChhhc------cCCCCCEEECCCCccCCCCHHHhcCccC
Confidence 33211110 1134555555555555443222 24555555555555554432 3333333
Q ss_pred CCCcchhH-----------HHhh--hhcCCCCcc-ccccccccccccceeeccCCh
Q 001385 341 CHHPLLAS-----------ALAK--IMQDQENRV-VVGKDENAVRQLISMISSDNR 382 (1088)
Q Consensus 341 l~~l~l~~-----------~L~~--i~~l~~N~l-~ip~~~~~Lp~L~~L~Ls~N~ 382 (1088)
|..+.+.. .+.+ .+++++|.+ .+|.++..+++|+.|++++|.
T Consensus 280 L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~ 335 (597)
T 3oja_B 280 LERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS 335 (597)
T ss_dssp CCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSC
T ss_pred CCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCC
Confidence 33221100 0011 134556655 666666777777777777776
No 32
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.85 E-value=6.1e-21 Score=225.82 Aligned_cols=225 Identities=17% Similarity=0.172 Sum_probs=173.5
Q ss_pred CCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCccc-cccCCCCCcEEE
Q 001385 125 EPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPV-DLTRLPVLEKLY 203 (1088)
Q Consensus 125 ~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~ 203 (1088)
++++.|+|++|++....+..|.++++|++|+|++|. +....+..|.++++|++|+|++|+|+.+|. .+..+++|++|+
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSC-CCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCc-CCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence 578888888888888777888888888888888888 666667788888888888888888888876 577888888888
Q ss_pred ccCCCCCCCch-hhcCCCCCcEEEccC-CcCcccch-hccCCCCCCEEEeccCCCCCCcccccCCccccEEEecCCCCCC
Q 001385 204 LDNNKLSTLPP-ELGAMKNLKVLIVDN-NMLVCVPV-ELRECVGLVELSLEHNRLVRPLLDFRAMAELKILRLFGNPLEF 280 (1088)
Q Consensus 204 L~~N~l~~lp~-~l~~l~~L~~L~Ls~-N~l~~lp~-~l~~l~~L~~L~Ls~N~l~~~~~~l~~l~~L~~L~Ls~N~l~~ 280 (1088)
|++|+++.++. .|..+++|++|+|++ |.+..++. .+.++++|++|+|++|.++.++ .+..+++|+.|+|++|.++.
T Consensus 143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~ 221 (440)
T 3zyj_A 143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSA 221 (440)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-CCTTCSSCCEEECTTSCCCE
T ss_pred CCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-ccCCCcccCEEECCCCccCc
Confidence 88888886664 678888888888888 45556655 5788888888888888888664 67788888888888888883
Q ss_pred C--ccccCCCCCCeEEeeCCCCCCCccccchhhhhcCcCCccccccccchhhhHHhhhcccCCCCcchhHHHhhhhcCCC
Q 001385 281 L--PEILPLLKLRHLSLANIRIVADENLRSVNVQIEMENNSYFGASRHKLSAFFSLIFRFSSCHHPLLASALAKIMQDQE 358 (1088)
Q Consensus 281 l--~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~~~~l~~l~~l~l~~n~l~~~~~~l~~l~~l~~l~l~~~L~~i~~l~~ 358 (1088)
+ ..+..+++|+.|+|++|.++....-. +..+++|+.|++++|.++.++
T Consensus 222 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~-------------------------- 271 (440)
T 3zyj_A 222 IRPGSFQGLMHLQKLWMIQSQIQVIERNA----FDNLQSLVEINLAHNNLTLLP-------------------------- 271 (440)
T ss_dssp ECTTTTTTCTTCCEEECTTCCCCEECTTS----STTCTTCCEEECTTSCCCCCC--------------------------
T ss_pred cChhhhccCccCCEEECCCCceeEEChhh----hcCCCCCCEEECCCCCCCccC--------------------------
Confidence 3 36778888888888888887632111 224677888888888765422
Q ss_pred CccccccccccccccceeeccCChhhhh
Q 001385 359 NRVVVGKDENAVRQLISMISSDNRHVVE 386 (1088)
Q Consensus 359 N~l~ip~~~~~Lp~L~~L~Ls~N~~v~~ 386 (1088)
+..+..+++|+.|++++|+..++
T Consensus 272 -----~~~~~~l~~L~~L~L~~Np~~Cd 294 (440)
T 3zyj_A 272 -----HDLFTPLHHLERIHLHHNPWNCN 294 (440)
T ss_dssp -----TTTTSSCTTCCEEECCSSCEECS
T ss_pred -----hhHhccccCCCEEEcCCCCccCC
Confidence 12245688999999999995444
No 33
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.85 E-value=8.6e-21 Score=231.79 Aligned_cols=89 Identities=18% Similarity=0.041 Sum_probs=65.2
Q ss_pred hhhcCCCCCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCcc--ccccC
Q 001385 118 MRVVKRREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALP--VDLTR 195 (1088)
Q Consensus 118 ~~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp--~~l~~ 195 (1088)
...|..+++|++|+|++|.+++..|..|.++++|++|+|++|+ +. .+|.. .+++|++|+|++|.++.++ ..+.+
T Consensus 69 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~ 144 (562)
T 3a79_B 69 MPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR-LQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGN 144 (562)
T ss_dssp GGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSC-CC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGG
T ss_pred hhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCc-CC-ccCcc--ccccCCEEECCCCCccccCchHhhcc
Confidence 3567777888888888888777667777778888888888887 33 34443 6778888888888877554 56777
Q ss_pred CCCCcEEEccCCCCC
Q 001385 196 LPVLEKLYLDNNKLS 210 (1088)
Q Consensus 196 l~~L~~L~L~~N~l~ 210 (1088)
+++|++|+|++|+++
T Consensus 145 l~~L~~L~L~~n~l~ 159 (562)
T 3a79_B 145 LTKLTFLGLSAAKFR 159 (562)
T ss_dssp CTTCCEEEEECSBCC
T ss_pred cCcccEEecCCCccc
Confidence 778888887777765
No 34
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.85 E-value=5.7e-21 Score=231.04 Aligned_cols=106 Identities=13% Similarity=0.023 Sum_probs=80.9
Q ss_pred CCceEEeccCCCCCcccccccccccchhhcCCCCCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCcccccc
Q 001385 92 EDTVVVELAPQEEGDVATDAANVGVEMRVVKRREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCD 171 (1088)
Q Consensus 92 ~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~ 171 (1088)
.....++++..... .+....|..+++|++|+|++|.+++..|..|.++++|++|+|++|+ +. .+|..
T Consensus 21 ~~L~~L~Ls~n~i~---------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~-~lp~~-- 87 (520)
T 2z7x_B 21 QKTTILNISQNYIS---------ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK-LV-KISCH-- 87 (520)
T ss_dssp TTCSEEECCSSCCC---------CCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC-CC-EEECC--
T ss_pred ccccEEECCCCccc---------ccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc-ee-ecCcc--
Confidence 34456666554421 2333578888999999999999888778888899999999999998 44 34444
Q ss_pred CCCCccEEEccCCCCCC--ccccccCCCCCcEEEccCCCCC
Q 001385 172 HWKTVTAVSLCGLGLSA--LPVDLTRLPVLEKLYLDNNKLS 210 (1088)
Q Consensus 172 ~l~~L~~L~Ls~n~l~~--lp~~l~~l~~L~~L~L~~N~l~ 210 (1088)
.+++|++|+|++|.++. +|..++.+++|++|+|++|.++
T Consensus 88 ~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~ 128 (520)
T 2z7x_B 88 PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE 128 (520)
T ss_dssp CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCC
T ss_pred ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccc
Confidence 78899999999999885 5678888888888888888775
No 35
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.85 E-value=3.5e-21 Score=216.27 Aligned_cols=202 Identities=16% Similarity=0.106 Sum_probs=166.4
Q ss_pred CCCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCC--ccccccCCCCccEEEccCCCCCCccccccCCCCCcE
Q 001385 124 REPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNM--GSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPVLEK 201 (1088)
Q Consensus 124 l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~--~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~ 201 (1088)
.++|++|+|++|.++...+..|.++++|++|+|++|. +... .+..+..+++|++|+|++|.++.+|..+..+++|++
T Consensus 27 ~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~ 105 (306)
T 2z66_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNG-LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEH 105 (306)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCE
T ss_pred CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCc-cCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCE
Confidence 3689999999999986544567899999999999998 4322 245566789999999999999999988999999999
Q ss_pred EEccCCCCCCCch--hhcCCCCCcEEEccCCcCc-ccchhccCCCCCCEEEeccCCCCC--CcccccCCccccEEEecCC
Q 001385 202 LYLDNNKLSTLPP--ELGAMKNLKVLIVDNNMLV-CVPVELRECVGLVELSLEHNRLVR--PLLDFRAMAELKILRLFGN 276 (1088)
Q Consensus 202 L~L~~N~l~~lp~--~l~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~Ls~N~l~~--~~~~l~~l~~L~~L~Ls~N 276 (1088)
|++++|+++.++. .+..+++|++|++++|.++ ..+..+.++++|++|++++|.+.+ .+..+..+++|+.|+|++|
T Consensus 106 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n 185 (306)
T 2z66_A 106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 185 (306)
T ss_dssp EECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred EECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCC
Confidence 9999999997764 6889999999999999998 455668889999999999999986 3456889999999999999
Q ss_pred CCCCC--ccccCCCCCCeEEeeCCCCCCCccccchhhhhcCcCCccccccccchhh
Q 001385 277 PLEFL--PEILPLLKLRHLSLANIRIVADENLRSVNVQIEMENNSYFGASRHKLSA 330 (1088)
Q Consensus 277 ~l~~l--~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~~~~l~~l~~l~l~~n~l~~ 330 (1088)
.++.+ ..+..+++|++|+|++|.++..+... +..+++|+.+++++|.+.+
T Consensus 186 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~L~~N~l~~ 237 (306)
T 2z66_A 186 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP----YKCLNSLQVLDYSLNHIMT 237 (306)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCSBCCSGG----GTTCTTCCEEECTTSCCCB
T ss_pred CcCCcCHHHhcCCCCCCEEECCCCccCccChhh----ccCcccCCEeECCCCCCcc
Confidence 99843 36788999999999999998754322 2247888888888887655
No 36
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.85 E-value=2.9e-22 Score=226.45 Aligned_cols=202 Identities=16% Similarity=0.090 Sum_probs=146.7
Q ss_pred hhcCCCCCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCccccccCCCC
Q 001385 119 RVVKRREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPV 198 (1088)
Q Consensus 119 ~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~ 198 (1088)
..+..+++|++|+|++|.+++..|..|.++++|++|+|++|. +....+ +..+++|++|+|++|.++.++. +++
T Consensus 28 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~----~~~ 100 (317)
T 3o53_A 28 SLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD--LESLSTLRTLDLNNNYVQELLV----GPS 100 (317)
T ss_dssp HHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSC-CEEEEE--ETTCTTCCEEECCSSEEEEEEE----CTT
T ss_pred HHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCc-CCcchh--hhhcCCCCEEECcCCccccccC----CCC
Confidence 445566788888888888887777778888888888888887 333333 7788888888888888876653 377
Q ss_pred CcEEEccCCCCCCCchhhcCCCCCcEEEccCCcCcccch-hccCCCCCCEEEeccCCCCCCcc-cc-cCCccccEEEecC
Q 001385 199 LEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPV-ELRECVGLVELSLEHNRLVRPLL-DF-RAMAELKILRLFG 275 (1088)
Q Consensus 199 L~~L~L~~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~lp~-~l~~l~~L~~L~Ls~N~l~~~~~-~l-~~l~~L~~L~Ls~ 275 (1088)
|++|++++|+++.++. ..+++|++|++++|.++.++. .+..+++|++|+|++|.+++..+ .+ ..+++|++|+|++
T Consensus 101 L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~ 178 (317)
T 3o53_A 101 IETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178 (317)
T ss_dssp CCEEECCSSCCSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred cCEEECCCCccCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCC
Confidence 8888888888876553 236778888888888886643 66778888888888888877653 34 4678888888888
Q ss_pred CCCCCCccccCCCCCCeEEeeCCCCCCCccccchhhhhcCcCCccccccccchhhhHHh
Q 001385 276 NPLEFLPEILPLLKLRHLSLANIRIVADENLRSVNVQIEMENNSYFGASRHKLSAFFSL 334 (1088)
Q Consensus 276 N~l~~l~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~~~~l~~l~~l~l~~n~l~~~~~~ 334 (1088)
|.++.++....+++|++|+|++|.++..+.- +..+++|+.+++++|.+..++..
T Consensus 179 N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~-----~~~l~~L~~L~L~~N~l~~l~~~ 232 (317)
T 3o53_A 179 NFIYDVKGQVVFAKLKTLDLSSNKLAFMGPE-----FQSAAGVTWISLRNNKLVLIEKA 232 (317)
T ss_dssp SCCCEEECCCCCTTCCEEECCSSCCCEECGG-----GGGGTTCSEEECTTSCCCEECTT
T ss_pred CcCcccccccccccCCEEECCCCcCCcchhh-----hcccCcccEEECcCCcccchhhH
Confidence 8888666666678888888888888763211 12367777778777776654433
No 37
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.85 E-value=2.2e-20 Score=230.40 Aligned_cols=264 Identities=18% Similarity=0.112 Sum_probs=194.4
Q ss_pred CceEEeccCCCCCcccccccccccchhhcCCCCCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccC
Q 001385 93 DTVVVELAPQEEGDVATDAANVGVEMRVVKRREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDH 172 (1088)
Q Consensus 93 ~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 172 (1088)
....++++..... .+....|..+++|++|+|++|.+.+..|..|.++++|++|+|++|. +....|..|.+
T Consensus 34 ~l~~L~Ls~n~i~---------~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~ 103 (606)
T 3t6q_A 34 STECLEFSFNVLP---------TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP-LIFMAETALSG 103 (606)
T ss_dssp TCCEEECTTCCCS---------EECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CSEECTTTTSS
T ss_pred cCcEEEccCCccC---------cCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCc-ccccChhhhcc
Confidence 4557777655431 2334678899999999999999998888899999999999999998 66777888999
Q ss_pred CCCccEEEccCCCCCCc-cccccCCCCCcEEEccCCCCCCCc-hhhcCCCCCcEEEccCCcCccc-chhccCCCCCC--E
Q 001385 173 WKTVTAVSLCGLGLSAL-PVDLTRLPVLEKLYLDNNKLSTLP-PELGAMKNLKVLIVDNNMLVCV-PVELRECVGLV--E 247 (1088)
Q Consensus 173 l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~N~l~~lp-~~l~~l~~L~~L~Ls~N~l~~l-p~~l~~l~~L~--~ 247 (1088)
+++|++|+|++|.++.+ +..+..+++|++|+|++|+++.++ ..+..+++|++|++++|.++.+ |..+..+++|+ .
T Consensus 104 l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~ 183 (606)
T 3t6q_A 104 PKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLS 183 (606)
T ss_dssp CTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEE
T ss_pred cccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeE
Confidence 99999999999999987 467889999999999999999653 3455599999999999999965 56788899998 8
Q ss_pred EEeccCCCCCCcccccCCc----------------------------------------------------cccEEEecC
Q 001385 248 LSLEHNRLVRPLLDFRAMA----------------------------------------------------ELKILRLFG 275 (1088)
Q Consensus 248 L~Ls~N~l~~~~~~l~~l~----------------------------------------------------~L~~L~Ls~ 275 (1088)
|++++|.+++.++...... +|+.|++++
T Consensus 184 L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~ 263 (606)
T 3t6q_A 184 LNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQK 263 (606)
T ss_dssp EECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTT
T ss_pred EecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeec
Confidence 8999998876554221111 567777777
Q ss_pred CCCCCCc--cccCCCCCCeEEeeCCCCCCCc-cccchhhhhcCcCCccccccccchhhhHH-hhhcccCCCCcchhHHHh
Q 001385 276 NPLEFLP--EILPLLKLRHLSLANIRIVADE-NLRSVNVQIEMENNSYFGASRHKLSAFFS-LIFRFSSCHHPLLASALA 351 (1088)
Q Consensus 276 N~l~~l~--~l~~l~~L~~L~L~~N~l~~~~-~l~~l~~~~~l~~l~~l~l~~n~l~~~~~-~l~~l~~l~~l~l~~~L~ 351 (1088)
|.++.++ .+..+++|++|++++|.++.++ .+. .+++|+.|++++|.+...++ .+..+.+++.+
T Consensus 264 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L------- 330 (606)
T 3t6q_A 264 HYFFNISSNTFHCFSGLQELDLTATHLSELPSGLV------GLSTLKKLVLSANKFENLCQISASNFPSLTHL------- 330 (606)
T ss_dssp CCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCC------SCTTCCEEECTTCCCSBGGGGCGGGCTTCSEE-------
T ss_pred CccCccCHHHhccccCCCEEeccCCccCCCChhhc------ccccCCEEECccCCcCcCchhhhhccCcCCEE-------
Confidence 7777444 3777888888888888887643 233 37788888888888877654 45555555542
Q ss_pred hhhcCCCCcc--cccc-ccccccccceeeccCCh
Q 001385 352 KIMQDQENRV--VVGK-DENAVRQLISMISSDNR 382 (1088)
Q Consensus 352 ~i~~l~~N~l--~ip~-~~~~Lp~L~~L~Ls~N~ 382 (1088)
++.+|.+ .++. .+..+++|+.|++++|.
T Consensus 331 ---~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 361 (606)
T 3t6q_A 331 ---SIKGNTKRLELGTGCLENLENLRELDLSHDD 361 (606)
T ss_dssp ---ECCSCSSCCBCCSSTTTTCTTCCEEECCSSC
T ss_pred ---ECCCCCcccccchhhhhccCcCCEEECCCCc
Confidence 2333332 2222 24455555555555554
No 38
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.84 E-value=2.6e-20 Score=229.74 Aligned_cols=262 Identities=21% Similarity=0.170 Sum_probs=153.2
Q ss_pred hhcCCCCCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCC-Cccc-cccCC
Q 001385 119 RVVKRREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLS-ALPV-DLTRL 196 (1088)
Q Consensus 119 ~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~-~lp~-~l~~l 196 (1088)
..|..+++|++|++++|.++ .+|..+.++++|++|+|++|. +....+..+..+++|++|+|++|.+. .+|. .+..+
T Consensus 272 ~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l 349 (606)
T 3t6q_A 272 NTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANK-FENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENL 349 (606)
T ss_dssp TTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCC-CSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTC
T ss_pred HHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCC-cCcCchhhhhccCcCCEEECCCCCcccccchhhhhcc
Confidence 45667777777777777776 366667777777777777776 55555666667777777777777665 4544 36667
Q ss_pred CCCcEEEccCCCCCCC---chhhcCCCCCcEEEccCCcCccc-chhccCCCCCCEEEeccCCCCCCcc--cccCCccccE
Q 001385 197 PVLEKLYLDNNKLSTL---PPELGAMKNLKVLIVDNNMLVCV-PVELRECVGLVELSLEHNRLVRPLL--DFRAMAELKI 270 (1088)
Q Consensus 197 ~~L~~L~L~~N~l~~l---p~~l~~l~~L~~L~Ls~N~l~~l-p~~l~~l~~L~~L~Ls~N~l~~~~~--~l~~l~~L~~ 270 (1088)
++|++|++++|.++.+ +..+..+++|++|++++|.++.+ |..+.++++|++|++++|.+.+..+ .+..+++|+.
T Consensus 350 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 429 (606)
T 3t6q_A 350 ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKV 429 (606)
T ss_dssp TTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCE
T ss_pred CcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCE
Confidence 7777777777776633 44566677777777777766633 4556666777777777776665432 2666666777
Q ss_pred EEecCCCCCCC-c-cccCCCCCCeEEeeCCCCCCC--ccccchhhhhcCcCCccccccccchhhhHH-hhhcccCCCCcc
Q 001385 271 LRLFGNPLEFL-P-EILPLLKLRHLSLANIRIVAD--ENLRSVNVQIEMENNSYFGASRHKLSAFFS-LIFRFSSCHHPL 345 (1088)
Q Consensus 271 L~Ls~N~l~~l-~-~l~~l~~L~~L~L~~N~l~~~--~~l~~l~~~~~l~~l~~l~l~~n~l~~~~~-~l~~l~~l~~l~ 345 (1088)
|++++|.++.. + .+..+++|++|+|++|.+++. +.... +..+++|+.|++++|.+.+.++ .+..+.+++.+.
T Consensus 430 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~---~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 506 (606)
T 3t6q_A 430 LNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNS---LQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVD 506 (606)
T ss_dssp EECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCG---GGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred EECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchh---hccCCCccEEECCCCccCccChhhhccccCCCEEE
Confidence 77777666622 2 355666666666666666541 11011 1235556666666666555432 333344333221
Q ss_pred h---------hHHHhh----hhcCCCCcc--ccccccccccccceeeccCChhhh
Q 001385 346 L---------ASALAK----IMQDQENRV--VVGKDENAVRQLISMISSDNRHVV 385 (1088)
Q Consensus 346 l---------~~~L~~----i~~l~~N~l--~ip~~~~~Lp~L~~L~Ls~N~~v~ 385 (1088)
+ ...+.+ .+++.+|.+ ..|..+..+++|+.|++++|+..+
T Consensus 507 Ls~N~l~~~~~~~l~~l~~L~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 561 (606)
T 3t6q_A 507 LSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561 (606)
T ss_dssp CCSSCCCGGGGGGGTTCCSCEEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEEC
T ss_pred CCCCccCcCChhHhCcccccEEECcCCcccccCHhhcccCCCCCEEeCCCCCccc
Confidence 0 000000 134455555 223345666667777777766443
No 39
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.84 E-value=1.1e-21 Score=221.57 Aligned_cols=244 Identities=16% Similarity=0.085 Sum_probs=200.8
Q ss_pred CccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCccccccCCCCCcEEEcc
Q 001385 126 PLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPVLEKLYLD 205 (1088)
Q Consensus 126 ~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 205 (1088)
.++.++++.+.+.......+..+++|++|+|++|. +....+..+..+++|++|+|++|.++.++. +..+++|++|+|+
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSC-CCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCc-cCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECc
Confidence 34555666666654444556677899999999999 677777889999999999999999997765 8999999999999
Q ss_pred CCCCCCCchhhcCCCCCcEEEccCCcCcccchhccCCCCCCEEEeccCCCCCCcc-cccCCccccEEEecCCCCCCCc--
Q 001385 206 NNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVELRECVGLVELSLEHNRLVRPLL-DFRAMAELKILRLFGNPLEFLP-- 282 (1088)
Q Consensus 206 ~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~~~~-~l~~l~~L~~L~Ls~N~l~~l~-- 282 (1088)
+|+++.++ .+++|++|++++|.++.++. ..+++|++|++++|.+++..+ .+..+++|+.|+|++|.++.++
T Consensus 89 ~n~l~~l~----~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 162 (317)
T 3o53_A 89 NNYVQELL----VGPSIETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA 162 (317)
T ss_dssp SSEEEEEE----ECTTCCEEECCSSCCSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGG
T ss_pred CCcccccc----CCCCcCEEECCCCccCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHH
Confidence 99998665 34899999999999997764 347899999999999999875 6889999999999999999433
Q ss_pred cc-cCCCCCCeEEeeCCCCCCCccccchhhhhcCcCCccccccccchhhhHHhhhcccCCCCcchhHHHhhhhcCCCCcc
Q 001385 283 EI-LPLLKLRHLSLANIRIVADENLRSVNVQIEMENNSYFGASRHKLSAFFSLIFRFSSCHHPLLASALAKIMQDQENRV 361 (1088)
Q Consensus 283 ~l-~~l~~L~~L~L~~N~l~~~~~l~~l~~~~~l~~l~~l~l~~n~l~~~~~~l~~l~~l~~l~l~~~L~~i~~l~~N~l 361 (1088)
.+ ..+++|++|+|++|.++..+... .+++|+.|++++|.++.+++.+..+.+++. +++.+|.+
T Consensus 163 ~~~~~l~~L~~L~L~~N~l~~~~~~~------~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~----------L~L~~N~l 226 (317)
T 3o53_A 163 ELAASSDTLEHLNLQYNFIYDVKGQV------VFAKLKTLDLSSNKLAFMGPEFQSAAGVTW----------ISLRNNKL 226 (317)
T ss_dssp GGGGGTTTCCEEECTTSCCCEEECCC------CCTTCCEEECCSSCCCEECGGGGGGTTCSE----------EECTTSCC
T ss_pred HHhhccCcCCEEECCCCcCccccccc------ccccCCEEECCCCcCCcchhhhcccCcccE----------EECcCCcc
Confidence 44 47899999999999998764443 388999999999999998877777777765 46778887
Q ss_pred -ccccccccccccceeeccCChhhhhhHHHHhc
Q 001385 362 -VVGKDENAVRQLISMISSDNRHVVEQACSALS 393 (1088)
Q Consensus 362 -~ip~~~~~Lp~L~~L~Ls~N~~v~~~a~~~L~ 393 (1088)
.+|..+..+++|+.|++++|+..+......++
T Consensus 227 ~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~ 259 (317)
T 3o53_A 227 VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259 (317)
T ss_dssp CEECTTCCCCTTCCEEECTTCCCBHHHHHHHHH
T ss_pred cchhhHhhcCCCCCEEEccCCCccCcCHHHHHh
Confidence 78888899999999999999965444333333
No 40
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.84 E-value=4.4e-20 Score=220.11 Aligned_cols=236 Identities=20% Similarity=0.236 Sum_probs=181.7
Q ss_pred cCCCCCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCccc---------
Q 001385 121 VKRREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPV--------- 191 (1088)
Q Consensus 121 ~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~--------- 191 (1088)
+..+++|++|++++|.+.+..+ +.++++|++|+|++|. +....+ +..+++|++|+|++|.++.++.
T Consensus 86 ~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~-l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~ 160 (466)
T 1o6v_A 86 LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQ-ITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQ 160 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC-CCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSE
T ss_pred hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCC-CCCChH--HcCCCCCCEEECCCCccCCChhhccCCcccE
Confidence 7788899999999998877544 8888999999999987 444432 7788888888888888775542
Q ss_pred -----------cccCCCCCcEEEccCCCCCCCchhhcCCCCCcEEEccCCcCcccchhccCCCCCCEEEeccCCCCCCcc
Q 001385 192 -----------DLTRLPVLEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVELRECVGLVELSLEHNRLVRPLL 260 (1088)
Q Consensus 192 -----------~l~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~~~~ 260 (1088)
.+.++++|++|++++|.++.++ .+..+++|++|++++|.++.++. ++.+++|+.|++++|.+++. +
T Consensus 161 L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~-~ 237 (466)
T 1o6v_A 161 LSFGNQVTDLKPLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDI-G 237 (466)
T ss_dssp EEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC-G
T ss_pred eecCCcccCchhhccCCCCCEEECcCCcCCCCh-hhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccc-h
Confidence 2567788889999999988775 48889999999999999887654 77888999999999988875 4
Q ss_pred cccCCccccEEEecCCCCCCCccccCCCCCCeEEeeCCCCCCCccccchhhhhcCcCCccccccccchhhhHHhhhcccC
Q 001385 261 DFRAMAELKILRLFGNPLEFLPEILPLLKLRHLSLANIRIVADENLRSVNVQIEMENNSYFGASRHKLSAFFSLIFRFSS 340 (1088)
Q Consensus 261 ~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~~~~l~~l~~l~l~~n~l~~~~~~l~~l~~ 340 (1088)
.+..+++|+.|++++|.++.++.+..+++|+.|++++|.++..+.+. .+++|+.|++++|.+.+.++ +..+.+
T Consensus 238 ~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~------~l~~L~~L~L~~n~l~~~~~-~~~l~~ 310 (466)
T 1o6v_A 238 TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLA------GLTALTNLELNENQLEDISP-ISNLKN 310 (466)
T ss_dssp GGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGT------TCTTCSEEECCSSCCSCCGG-GGGCTT
T ss_pred hhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCcccccc------CCCccCeEEcCCCcccCchh-hcCCCC
Confidence 67788899999999998887777888889999999999888765443 37788888888888877655 445555
Q ss_pred CCCcchhHHHhhhhcCCCCcc-ccccccccccccceeeccCCh
Q 001385 341 CHHPLLASALAKIMQDQENRV-VVGKDENAVRQLISMISSDNR 382 (1088)
Q Consensus 341 l~~l~l~~~L~~i~~l~~N~l-~ip~~~~~Lp~L~~L~Ls~N~ 382 (1088)
++. +++.+|.+ .++. +..+++|+.|++++|.
T Consensus 311 L~~----------L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~ 342 (466)
T 1o6v_A 311 LTY----------LTLYFNNISDISP-VSSLTKLQRLFFYNNK 342 (466)
T ss_dssp CSE----------EECCSSCCSCCGG-GGGCTTCCEEECCSSC
T ss_pred CCE----------EECcCCcCCCchh-hccCccCCEeECCCCc
Confidence 543 34556655 2222 5667777777777775
No 41
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.84 E-value=5.2e-20 Score=218.38 Aligned_cols=236 Identities=14% Similarity=0.113 Sum_probs=170.9
Q ss_pred hcCCCCCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCccccccCCCCC
Q 001385 120 VVKRREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPVL 199 (1088)
Q Consensus 120 ~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L 199 (1088)
.+..+++|++|+|++|.+++. | ++.+++|++|+|++|. +.+. + +..+++|++|+|++|+++.+| +..+++|
T Consensus 59 ~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~-l~~~-~--~~~l~~L~~L~L~~N~l~~l~--~~~l~~L 129 (457)
T 3bz5_A 59 GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNK-LTNL-D--VTPLTKLTYLNCDTNKLTKLD--VSQNPLL 129 (457)
T ss_dssp TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSC-CSCC-C--CTTCTTCCEEECCSSCCSCCC--CTTCTTC
T ss_pred hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCC-Ccee-e--cCCCCcCCEEECCCCcCCeec--CCCCCcC
Confidence 467778888888888888773 3 7788888888888887 4443 2 677888888888888888775 7788888
Q ss_pred cEEEccCCCCCCCchhhcCCCCCcEEEccCCc-CcccchhccCCCCCCEEEeccCCCCCCcccccCCccccEEEecCCCC
Q 001385 200 EKLYLDNNKLSTLPPELGAMKNLKVLIVDNNM-LVCVPVELRECVGLVELSLEHNRLVRPLLDFRAMAELKILRLFGNPL 278 (1088)
Q Consensus 200 ~~L~L~~N~l~~lp~~l~~l~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~Ls~N~l~~~~~~l~~l~~L~~L~Ls~N~l 278 (1088)
++|++++|+++.++ +..+++|++|++++|. +..+ .+..+++|+.|++++|++++++ +..+++|+.|++++|.+
T Consensus 130 ~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l 203 (457)
T 3bz5_A 130 TYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNI 203 (457)
T ss_dssp CEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCC
T ss_pred CEEECCCCccceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec--cccCCCCCEEECcCCcC
Confidence 88888888888764 7778888888888884 4455 4777888888888888888764 77788888888888888
Q ss_pred CCCccccCCCCCCeEEeeCCCCCCCccccchhhhhcCcCCccccccccchhhhHHhhhcccCCCCcchhHHHhhhhcCCC
Q 001385 279 EFLPEILPLLKLRHLSLANIRIVADENLRSVNVQIEMENNSYFGASRHKLSAFFSLIFRFSSCHHPLLASALAKIMQDQE 358 (1088)
Q Consensus 279 ~~l~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~~~~l~~l~~l~l~~n~l~~~~~~l~~l~~l~~l~l~~~L~~i~~l~~ 358 (1088)
+.+ .+..+++|+.|++++|++++.+ +. .+++|+.+++++|.+++.+. ..+.+++.+.+...--..+++..
T Consensus 204 ~~~-~l~~l~~L~~L~Ls~N~l~~ip-~~------~l~~L~~L~l~~N~l~~~~~--~~l~~L~~L~l~~n~L~~L~l~~ 273 (457)
T 3bz5_A 204 TKL-DLNQNIQLTFLDCSSNKLTEID-VT------PLTQLTYFDCSVNPLTELDV--STLSKLTTLHCIQTDLLEIDLTH 273 (457)
T ss_dssp SCC-CCTTCTTCSEEECCSSCCSCCC-CT------TCTTCSEEECCSSCCSCCCC--TTCTTCCEEECTTCCCSCCCCTT
T ss_pred Cee-ccccCCCCCEEECcCCcccccC-cc------ccCCCCEEEeeCCcCCCcCH--HHCCCCCEEeccCCCCCEEECCC
Confidence 866 4778888888888888888764 33 37788888888888887652 23333332211110001134555
Q ss_pred Ccc--ccccccccccccceeeccCCh
Q 001385 359 NRV--VVGKDENAVRQLISMISSDNR 382 (1088)
Q Consensus 359 N~l--~ip~~~~~Lp~L~~L~Ls~N~ 382 (1088)
|.. .+| .+.+++|+.|++++|.
T Consensus 274 n~~~~~~~--~~~l~~L~~L~Ls~n~ 297 (457)
T 3bz5_A 274 NTQLIYFQ--AEGCRKIKELDVTHNT 297 (457)
T ss_dssp CTTCCEEE--CTTCTTCCCCCCTTCT
T ss_pred CccCCccc--ccccccCCEEECCCCc
Confidence 544 333 4678899999998887
No 42
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=2.2e-20 Score=210.06 Aligned_cols=197 Identities=17% Similarity=0.229 Sum_probs=171.0
Q ss_pred cCCCCCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCccccccCCCCCc
Q 001385 121 VKRREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPVLE 200 (1088)
Q Consensus 121 ~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~ 200 (1088)
+..+++|++|++++|.+.. ++ .+..+++|++|+|++|. +....+ +..+++|++|+|++|.++.++ .+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~-i~~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~ 110 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQ-ITDLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIK 110 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSC-CCCCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCC
T ss_pred HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCc-CCCChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCC
Confidence 3457789999999999876 44 58889999999999998 454444 889999999999999999886 688999999
Q ss_pred EEEccCCCCCCCchhhcCCCCCcEEEccCCcCcccchhccCCCCCCEEEeccCCCCCCcccccCCccccEEEecCCCCCC
Q 001385 201 KLYLDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVELRECVGLVELSLEHNRLVRPLLDFRAMAELKILRLFGNPLEF 280 (1088)
Q Consensus 201 ~L~L~~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~~~~~l~~l~~L~~L~Ls~N~l~~ 280 (1088)
+|+|++|+++.++. +..+++|++|++++|.++.++. +..+++|+.|+|++|.+++.++ +..+++|+.|+|++|.++.
T Consensus 111 ~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~ 187 (308)
T 1h6u_A 111 TLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISD 187 (308)
T ss_dssp EEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC
T ss_pred EEECCCCCCCCchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCc
Confidence 99999999998874 8999999999999999998875 8899999999999999988765 8899999999999999998
Q ss_pred CccccCCCCCCeEEeeCCCCCCCccccchhhhhcCcCCccccccccchhhhH
Q 001385 281 LPEILPLLKLRHLSLANIRIVADENLRSVNVQIEMENNSYFGASRHKLSAFF 332 (1088)
Q Consensus 281 l~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~~~~l~~l~~l~l~~n~l~~~~ 332 (1088)
++.+..+++|++|+|++|.++....+. .+++|+.+++++|.++..+
T Consensus 188 ~~~l~~l~~L~~L~L~~N~l~~~~~l~------~l~~L~~L~l~~N~i~~~~ 233 (308)
T 1h6u_A 188 ISPLASLPNLIEVHLKNNQISDVSPLA------NTSNLFIVTLTNQTITNQP 233 (308)
T ss_dssp CGGGGGCTTCCEEECTTSCCCBCGGGT------TCTTCCEEEEEEEEEECCC
T ss_pred ChhhcCCCCCCEEEccCCccCcccccc------CCCCCCEEEccCCeeecCC
Confidence 888889999999999999998876443 4889999999999988755
No 43
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.84 E-value=4.1e-20 Score=219.25 Aligned_cols=228 Identities=18% Similarity=0.167 Sum_probs=192.5
Q ss_pred hcCCCCCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCccccccCCCCC
Q 001385 120 VVKRREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPVL 199 (1088)
Q Consensus 120 ~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L 199 (1088)
.+..+++|++|++++|.+++ +| .+..+++|++|+|++|. +.+. + +..+++|++|+|++|.++.++ +..+++|
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~-l~~~-~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L 108 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNN-ITTL-D--LSQNTNLTYLACDSNKLTNLD--VTPLTKL 108 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSC-CSCC-C--CTTCTTCSEEECCSSCCSCCC--CTTCTTC
T ss_pred ChhHcCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCc-CCeE-c--cccCCCCCEEECcCCCCceee--cCCCCcC
Confidence 45678899999999999987 45 69999999999999998 4443 3 789999999999999999885 8899999
Q ss_pred cEEEccCCCCCCCchhhcCCCCCcEEEccCCcCcccchhccCCCCCCEEEeccCCCCCCcccccCCccccEEEecCCCCC
Q 001385 200 EKLYLDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVELRECVGLVELSLEHNRLVRPLLDFRAMAELKILRLFGNPLE 279 (1088)
Q Consensus 200 ~~L~L~~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~~~~~l~~l~~L~~L~Ls~N~l~ 279 (1088)
++|++++|+++.+| +..+++|++|++++|.++.++ ++++++|++|++++|...+.. .+..+++|+.|++++|.++
T Consensus 109 ~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~ 183 (457)
T 3bz5_A 109 TYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL-DVTPQTQLTTLDCSFNKIT 183 (457)
T ss_dssp CEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC-CCTTCTTCCEEECCSSCCC
T ss_pred CEEECCCCcCCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccc-ccccCCcCCEEECCCCccc
Confidence 99999999999886 899999999999999999885 889999999999999654433 6888999999999999999
Q ss_pred CCccccCCCCCCeEEeeCCCCCCCccccchhhhhcCcCCccccccccchhhhHHhhhcccCCCCcchhHHHhhhhcCCCC
Q 001385 280 FLPEILPLLKLRHLSLANIRIVADENLRSVNVQIEMENNSYFGASRHKLSAFFSLIFRFSSCHHPLLASALAKIMQDQEN 359 (1088)
Q Consensus 280 ~l~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~~~~l~~l~~l~l~~n~l~~~~~~l~~l~~l~~l~l~~~L~~i~~l~~N 359 (1088)
.++ +..+++|+.|++++|.++..+ +. .+++|+.|+++.|.++++| +..+.+++. +++.+|
T Consensus 184 ~l~-l~~l~~L~~L~l~~N~l~~~~-l~------~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~----------L~l~~N 243 (457)
T 3bz5_A 184 ELD-VSQNKLLNRLNCDTNNITKLD-LN------QNIQLTFLDCSSNKLTEID--VTPLTQLTY----------FDCSVN 243 (457)
T ss_dssp CCC-CTTCTTCCEEECCSSCCSCCC-CT------TCTTCSEEECCSSCCSCCC--CTTCTTCSE----------EECCSS
T ss_pred eec-cccCCCCCEEECcCCcCCeec-cc------cCCCCCEEECcCCcccccC--ccccCCCCE----------EEeeCC
Confidence 887 889999999999999999862 33 4889999999999999865 555555554 456777
Q ss_pred cc-ccccccccccccceeeccCCh
Q 001385 360 RV-VVGKDENAVRQLISMISSDNR 382 (1088)
Q Consensus 360 ~l-~ip~~~~~Lp~L~~L~Ls~N~ 382 (1088)
.+ .++ .+.+++|+.|+++.|.
T Consensus 244 ~l~~~~--~~~l~~L~~L~l~~n~ 265 (457)
T 3bz5_A 244 PLTELD--VSTLSKLTTLHCIQTD 265 (457)
T ss_dssp CCSCCC--CTTCTTCCEEECTTCC
T ss_pred cCCCcC--HHHCCCCCEEeccCCC
Confidence 76 333 4567777777776654
No 44
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.84 E-value=3e-20 Score=206.45 Aligned_cols=202 Identities=19% Similarity=0.175 Sum_probs=170.6
Q ss_pred CCCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCC-CCCc-cccccCCCCCcE
Q 001385 124 REPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLG-LSAL-PVDLTRLPVLEK 201 (1088)
Q Consensus 124 l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~l-p~~l~~l~~L~~ 201 (1088)
.++|+.|+|++|.+++..+..|.++++|++|+|++|. +....+..+..+++|++|+|++|. ++.+ |..+..+++|++
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~ 109 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT 109 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCc-cceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCE
Confidence 5689999999999988777788999999999999998 666677888899999999999997 8877 567889999999
Q ss_pred EEccCCCCCCC-chhhcCCCCCcEEEccCCcCcccchh-ccCCCCCCEEEeccCCCCCCcc-cccCCccccEEEecCCCC
Q 001385 202 LYLDNNKLSTL-PPELGAMKNLKVLIVDNNMLVCVPVE-LRECVGLVELSLEHNRLVRPLL-DFRAMAELKILRLFGNPL 278 (1088)
Q Consensus 202 L~L~~N~l~~l-p~~l~~l~~L~~L~Ls~N~l~~lp~~-l~~l~~L~~L~Ls~N~l~~~~~-~l~~l~~L~~L~Ls~N~l 278 (1088)
|+|++|.++.+ |..+..+++|++|++++|.++.++.. +.++++|++|+|++|.++.+++ .|..+++|+.|+|++|.+
T Consensus 110 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 189 (285)
T 1ozn_A 110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189 (285)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcc
Confidence 99999999966 56688899999999999999977754 7889999999999999988775 488899999999999999
Q ss_pred CC--CccccCCCCCCeEEeeCCCCCCCccccchhhhhcCcCCccccccccchhh
Q 001385 279 EF--LPEILPLLKLRHLSLANIRIVADENLRSVNVQIEMENNSYFGASRHKLSA 330 (1088)
Q Consensus 279 ~~--l~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~~~~l~~l~~l~l~~n~l~~ 330 (1088)
+. ...+..+++|+.|+|++|.++..+.- .+..+++|+.+++++|.+..
T Consensus 190 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 190 AHVHPHAFRDLGRLMTLYLFANNLSALPTE----ALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSCCCHH----HHTTCTTCCEEECCSSCEEC
T ss_pred cccCHhHccCcccccEeeCCCCcCCcCCHH----HcccCcccCEEeccCCCccC
Confidence 83 34678899999999999999875321 12247889999999998764
No 45
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.84 E-value=1.7e-21 Score=233.22 Aligned_cols=231 Identities=15% Similarity=0.100 Sum_probs=164.6
Q ss_pred CCCCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCccccccCCCCCcEE
Q 001385 123 RREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPVLEKL 202 (1088)
Q Consensus 123 ~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L 202 (1088)
.+++|+.|+|++|.+++..|..|.++++|++|+|++|. +.+..+ +..+++|++|+|++|.|+.+|. .++|++|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC-CEEEEE--CTTCTTCCEEECCSSEEEEEEE----CTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcc--cccCCCCCEEEecCCcCCCCCC----CCCcCEE
Confidence 34478888888888888777788888888888888887 444333 7788888888888888886663 2788888
Q ss_pred EccCCCCCCCchhhcCCCCCcEEEccCCcCccc-chhccCCCCCCEEEeccCCCCCCcc-ccc-CCccccEEEecCCCCC
Q 001385 203 YLDNNKLSTLPPELGAMKNLKVLIVDNNMLVCV-PVELRECVGLVELSLEHNRLVRPLL-DFR-AMAELKILRLFGNPLE 279 (1088)
Q Consensus 203 ~L~~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~l-p~~l~~l~~L~~L~Ls~N~l~~~~~-~l~-~l~~L~~L~Ls~N~l~ 279 (1088)
+|++|.++.++. ..+++|+.|+|++|.++.+ |..++++++|+.|+|++|.+++.++ .+. .+++|+.|+|++|.|+
T Consensus 105 ~L~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 105 HAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp ECCSSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred ECcCCcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 888888886653 2467888888888888855 4567788888888888888887554 454 6788888888888888
Q ss_pred CCccccCCCCCCeEEeeCCCCCCC-ccccchhhhhcCcCCccccccccchhhhHHhhhcccCCCCcchhHHHhhhhcCCC
Q 001385 280 FLPEILPLLKLRHLSLANIRIVAD-ENLRSVNVQIEMENNSYFGASRHKLSAFFSLIFRFSSCHHPLLASALAKIMQDQE 358 (1088)
Q Consensus 280 ~l~~l~~l~~L~~L~L~~N~l~~~-~~l~~l~~~~~l~~l~~l~l~~n~l~~~~~~l~~l~~l~~l~l~~~L~~i~~l~~ 358 (1088)
.++.+..+++|+.|+|++|.+++. +.+. .+++|+.|++++|.++++|..+..+.++.. +++.+
T Consensus 183 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~------~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~----------L~l~~ 246 (487)
T 3oja_A 183 DVKGQVVFAKLKTLDLSSNKLAFMGPEFQ------SAAGVTWISLRNNKLVLIEKALRFSQNLEH----------FDLRG 246 (487)
T ss_dssp EEECCCCCTTCCEEECCSSCCCEECGGGG------GGTTCSEEECTTSCCCEECTTCCCCTTCCE----------EECTT
T ss_pred cccccccCCCCCEEECCCCCCCCCCHhHc------CCCCccEEEecCCcCcccchhhccCCCCCE----------EEcCC
Confidence 667666788888888888888763 2222 367788888888887765554444444432 23444
Q ss_pred Ccc---ccccccccccccceeec
Q 001385 359 NRV---VVGKDENAVRQLISMIS 378 (1088)
Q Consensus 359 N~l---~ip~~~~~Lp~L~~L~L 378 (1088)
|.+ .+|.++..++.|..|.+
T Consensus 247 N~l~c~~~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 247 NGFHCGTLRDFFSKNQRVQTVAK 269 (487)
T ss_dssp CCBCHHHHHHHHTTCHHHHHHHH
T ss_pred CCCcCcchHHHHHhCCCCcEEec
Confidence 443 33444555555555554
No 46
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.84 E-value=5.1e-20 Score=217.89 Aligned_cols=224 Identities=17% Similarity=0.188 Sum_probs=189.1
Q ss_pred CCceEEeccCCCCCcccccccccccchhhcCCCCCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCcccccc
Q 001385 92 EDTVVVELAPQEEGDVATDAANVGVEMRVVKRREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCD 171 (1088)
Q Consensus 92 ~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~ 171 (1088)
.....++++.+.. ..+....|..+++|++|+|++|.++...+..|.++++|++|+|++|+ +....+..|.
T Consensus 64 ~~l~~L~L~~n~i---------~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~ 133 (440)
T 3zyj_A 64 TNTRLLNLHENQI---------QIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR-LTTIPNGAFV 133 (440)
T ss_dssp TTCSEEECCSCCC---------CEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC-CSSCCTTTSC
T ss_pred CCCcEEEccCCcC---------CeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc-CCeeCHhHhh
Confidence 3345666654443 22344678999999999999999998888899999999999999998 6677777899
Q ss_pred CCCCccEEEccCCCCCCccc-cccCCCCCcEEEccC-CCCCCCch-hhcCCCCCcEEEccCCcCcccchhccCCCCCCEE
Q 001385 172 HWKTVTAVSLCGLGLSALPV-DLTRLPVLEKLYLDN-NKLSTLPP-ELGAMKNLKVLIVDNNMLVCVPVELRECVGLVEL 248 (1088)
Q Consensus 172 ~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~-N~l~~lp~-~l~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L 248 (1088)
.+++|++|+|++|.|+.++. .+..+++|++|+|++ |.+..++. .|.++++|++|+|++|.++.+| .+..+++|+.|
T Consensus 134 ~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L 212 (440)
T 3zyj_A 134 YLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDEL 212 (440)
T ss_dssp SCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-CCTTCSSCCEE
T ss_pred ccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-ccCCCcccCEE
Confidence 99999999999999998876 688999999999998 55666664 6889999999999999999998 58899999999
Q ss_pred EeccCCCCCCcc-cccCCccccEEEecCCCCCCCc--cccCCCCCCeEEeeCCCCCCCccccchhhhhcCcCCccccccc
Q 001385 249 SLEHNRLVRPLL-DFRAMAELKILRLFGNPLEFLP--EILPLLKLRHLSLANIRIVADENLRSVNVQIEMENNSYFGASR 325 (1088)
Q Consensus 249 ~Ls~N~l~~~~~-~l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~L~~N~l~~~~~l~~l~~~~~l~~l~~l~l~~ 325 (1088)
+|++|.+++..+ .|..+++|+.|+|++|.++.++ .+..+++|+.|+|++|+++..+.-. +..+++|+.+++++
T Consensus 213 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~L~~ 288 (440)
T 3zyj_A 213 DLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDL----FTPLHHLERIHLHH 288 (440)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTT----TSSCTTCCEEECCS
T ss_pred ECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhH----hccccCCCEEEcCC
Confidence 999999998864 7999999999999999999443 6889999999999999999853211 22478899999999
Q ss_pred cchhh
Q 001385 326 HKLSA 330 (1088)
Q Consensus 326 n~l~~ 330 (1088)
|.+..
T Consensus 289 Np~~C 293 (440)
T 3zyj_A 289 NPWNC 293 (440)
T ss_dssp SCEEC
T ss_pred CCccC
Confidence 98754
No 47
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.83 E-value=6.4e-20 Score=217.79 Aligned_cols=224 Identities=17% Similarity=0.178 Sum_probs=190.1
Q ss_pred CCceEEeccCCCCCcccccccccccchhhcCCCCCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCcccccc
Q 001385 92 EDTVVVELAPQEEGDVATDAANVGVEMRVVKRREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCD 171 (1088)
Q Consensus 92 ~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~ 171 (1088)
.....++++.+.. ..+....|..+++|+.|+|++|.|++..+..|.++++|++|+|++|+ +....+..|.
T Consensus 75 ~~l~~L~L~~n~i---------~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~ 144 (452)
T 3zyi_A 75 SNTRYLNLMENNI---------QMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAFE 144 (452)
T ss_dssp TTCSEEECCSSCC---------CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSBCCTTTSS
T ss_pred CCccEEECcCCcC---------ceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc-CCccChhhhc
Confidence 3455777755443 22344678999999999999999999888899999999999999999 6777777899
Q ss_pred CCCCccEEEccCCCCCCccc-cccCCCCCcEEEccC-CCCCCCch-hhcCCCCCcEEEccCCcCcccchhccCCCCCCEE
Q 001385 172 HWKTVTAVSLCGLGLSALPV-DLTRLPVLEKLYLDN-NKLSTLPP-ELGAMKNLKVLIVDNNMLVCVPVELRECVGLVEL 248 (1088)
Q Consensus 172 ~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~-N~l~~lp~-~l~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L 248 (1088)
.+++|++|+|++|.|+.+|. .+..+++|++|+|++ |.+..++. .|..+++|++|+|++|.++.+| .+..+++|+.|
T Consensus 145 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L 223 (452)
T 3zyi_A 145 YLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEEL 223 (452)
T ss_dssp SCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEE
T ss_pred ccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-cccccccccEE
Confidence 99999999999999998886 688999999999998 56666664 5889999999999999999987 58899999999
Q ss_pred EeccCCCCCCcc-cccCCccccEEEecCCCCCCC--ccccCCCCCCeEEeeCCCCCCCccccchhhhhcCcCCccccccc
Q 001385 249 SLEHNRLVRPLL-DFRAMAELKILRLFGNPLEFL--PEILPLLKLRHLSLANIRIVADENLRSVNVQIEMENNSYFGASR 325 (1088)
Q Consensus 249 ~Ls~N~l~~~~~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~~~~l~~l~~l~l~~ 325 (1088)
+|++|.+++..+ .|..+++|+.|+|++|.++.+ ..+..+++|+.|+|++|.++..+.-. +..+++|+.+++++
T Consensus 224 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~L~~ 299 (452)
T 3zyi_A 224 EMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDL----FTPLRYLVELHLHH 299 (452)
T ss_dssp ECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTS----STTCTTCCEEECCS
T ss_pred ECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHH----hccccCCCEEEccC
Confidence 999999998865 699999999999999999933 36889999999999999999753211 22478899999999
Q ss_pred cchhh
Q 001385 326 HKLSA 330 (1088)
Q Consensus 326 n~l~~ 330 (1088)
|.+..
T Consensus 300 Np~~C 304 (452)
T 3zyi_A 300 NPWNC 304 (452)
T ss_dssp SCEEC
T ss_pred CCcCC
Confidence 98754
No 48
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.83 E-value=1.3e-20 Score=212.24 Aligned_cols=199 Identities=19% Similarity=0.149 Sum_probs=168.4
Q ss_pred CCCCccEEEeeCCCCCCCCcccc--ccCccccEEeCcCCCCCCCCccccccCC-----CCccEEEccCCCCCCcc-cccc
Q 001385 123 RREPLRAVVLTKGVGSGHLSDGI--GVLTRLMRSDLSTSGPGNNMGSGFCDHW-----KTVTAVSLCGLGLSALP-VDLT 194 (1088)
Q Consensus 123 ~l~~L~~L~Ls~n~i~~~~p~~l--~~l~~L~~L~Ls~N~l~~~~~~~~~~~l-----~~L~~L~Ls~n~l~~lp-~~l~ 194 (1088)
.+++|++|+|++|.+++.+|..+ ..+++|++|+|++|+ +.+. |..+..+ ++|++|+|++|+++.++ ..+.
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~ 170 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR 170 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-Ccch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhc
Confidence 68899999999999998888876 899999999999998 5555 6777666 89999999999999777 6789
Q ss_pred CCCCCcEEEccCCCCCC---Cchhh--cCCCCCcEEEccCCcCcccc---hh-ccCCCCCCEEEeccCCCCCCc--cccc
Q 001385 195 RLPVLEKLYLDNNKLST---LPPEL--GAMKNLKVLIVDNNMLVCVP---VE-LRECVGLVELSLEHNRLVRPL--LDFR 263 (1088)
Q Consensus 195 ~l~~L~~L~L~~N~l~~---lp~~l--~~l~~L~~L~Ls~N~l~~lp---~~-l~~l~~L~~L~Ls~N~l~~~~--~~l~ 263 (1088)
.+++|++|+|++|++.. ++..+ ..+++|++|+|++|.++.++ .. +.++++|++|+|++|.+++.. +.+.
T Consensus 171 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 250 (312)
T 1wwl_A 171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD 250 (312)
T ss_dssp CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCC
T ss_pred cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhh
Confidence 99999999999999762 34455 88999999999999999443 33 368899999999999999876 3577
Q ss_pred CCccccEEEecCCCCCCCccccCCCCCCeEEeeCCCCCCCccccchhhhhcCcCCccccccccchhh
Q 001385 264 AMAELKILRLFGNPLEFLPEILPLLKLRHLSLANIRIVADENLRSVNVQIEMENNSYFGASRHKLSA 330 (1088)
Q Consensus 264 ~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~~~~l~~l~~l~l~~n~l~~ 330 (1088)
.+++|+.|+|++|.|+.+|.... ++|++|+|++|+|++.+.+. .+++|+.+++++|.+++
T Consensus 251 ~l~~L~~L~Ls~N~l~~ip~~~~-~~L~~L~Ls~N~l~~~p~~~------~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 251 WPSQLNSLNLSFTGLKQVPKGLP-AKLSVLDLSYNRLDRNPSPD------ELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCTTCCEEECTTSCCSSCCSSCC-SEEEEEECCSSCCCSCCCTT------TSCEEEEEECTTCTTTC
T ss_pred hcCCCCEEECCCCccChhhhhcc-CCceEEECCCCCCCCChhHh------hCCCCCEEeccCCCCCC
Confidence 78999999999999997774333 89999999999999875544 48899999999998764
No 49
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.83 E-value=3.3e-22 Score=225.41 Aligned_cols=244 Identities=15% Similarity=0.062 Sum_probs=169.6
Q ss_pred hhcCCCCCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCcccccc-------CCCCccEEEccCCCCC-Ccc
Q 001385 119 RVVKRREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCD-------HWKTVTAVSLCGLGLS-ALP 190 (1088)
Q Consensus 119 ~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~-------~l~~L~~L~Ls~n~l~-~lp 190 (1088)
+.++..++|+.|++++|.+ .+|..+... |+.|+|++|.+.....+..+. .+++|++|+|++|.++ .+|
T Consensus 37 ~~~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 112 (312)
T 1wwl_A 37 ELYGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAP 112 (312)
T ss_dssp EEEEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCC
T ss_pred EEEccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhH
Confidence 3455666778888888887 466655543 777888887732333444443 5778888888888887 677
Q ss_pred ccc--cCCCCCcEEEccCCCCCCCchhhcCC-----CCCcEEEccCCcCcccc-hhccCCCCCCEEEeccCCCCCC---c
Q 001385 191 VDL--TRLPVLEKLYLDNNKLSTLPPELGAM-----KNLKVLIVDNNMLVCVP-VELRECVGLVELSLEHNRLVRP---L 259 (1088)
Q Consensus 191 ~~l--~~l~~L~~L~L~~N~l~~lp~~l~~l-----~~L~~L~Ls~N~l~~lp-~~l~~l~~L~~L~Ls~N~l~~~---~ 259 (1088)
..+ ..+++|++|+|++|+++.+|..+..+ ++|++|+|++|.++.++ ..+.++++|++|+|++|++.+. +
T Consensus 113 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 192 (312)
T 1wwl_A 113 PPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI 192 (312)
T ss_dssp CCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHH
T ss_pred HHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHH
Confidence 665 77888888888888888667666655 78888888888888665 6777888888888888887653 2
Q ss_pred ccc--cCCccccEEEecCCCCCCCcc-----ccCCCCCCeEEeeCCCCCCCccccchhhhhcCcCCccccccccchhhhH
Q 001385 260 LDF--RAMAELKILRLFGNPLEFLPE-----ILPLLKLRHLSLANIRIVADENLRSVNVQIEMENNSYFGASRHKLSAFF 332 (1088)
Q Consensus 260 ~~l--~~l~~L~~L~Ls~N~l~~l~~-----l~~l~~L~~L~L~~N~l~~~~~l~~l~~~~~l~~l~~l~l~~n~l~~~~ 332 (1088)
..+ ..+++|+.|+|++|.++.++. +..+++|++|+|++|.+++...... ...+++|+.|++++|.++.+|
T Consensus 193 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~---~~~l~~L~~L~Ls~N~l~~ip 269 (312)
T 1wwl_A 193 SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS---CDWPSQLNSLNLSFTGLKQVP 269 (312)
T ss_dssp HHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSC---CCCCTTCCEEECTTSCCSSCC
T ss_pred HHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhh---hhhcCCCCEEECCCCccChhh
Confidence 233 777888888888888874432 2366788888888888877432221 113677888888888877655
Q ss_pred HhhhcccCCCCcchhHHHhhhhcCCCCcc-ccccccccccccceeeccCCh
Q 001385 333 SLIFRFSSCHHPLLASALAKIMQDQENRV-VVGKDENAVRQLISMISSDNR 382 (1088)
Q Consensus 333 ~~l~~l~~l~~l~l~~~L~~i~~l~~N~l-~ip~~~~~Lp~L~~L~Ls~N~ 382 (1088)
..+. .+++. +++++|.+ .+|. +..+++|+.|++++|+
T Consensus 270 ~~~~--~~L~~----------L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 270 KGLP--AKLSV----------LDLSYNRLDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp SSCC--SEEEE----------EECCSSCCCSCCC-TTTSCEEEEEECTTCT
T ss_pred hhcc--CCceE----------EECCCCCCCCChh-HhhCCCCCEEeccCCC
Confidence 4433 22322 45677777 4555 7889999999999998
No 50
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.83 E-value=7.1e-20 Score=203.94 Aligned_cols=199 Identities=24% Similarity=0.157 Sum_probs=129.8
Q ss_pred cCCCCCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCccccccCCCCCc
Q 001385 121 VKRREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPVLE 200 (1088)
Q Consensus 121 ~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~ 200 (1088)
+.++++++.|++++|.++. +|..+. ++|+.|+|++|. +....+..|..+++|++|+|++|.|+.++.. ..+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENL-LYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSC-CSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCC
T ss_pred ccccCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCc-CCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCC
Confidence 4456667777777776654 444342 567777777776 4555556666777777777777777766543 5667777
Q ss_pred EEEccCCCCCCCchhhcCCCCCcEEEccCCcCcccc-hhccCCCCCCEEEeccCCCCCCcc-cccCCccccEEEecCCCC
Q 001385 201 KLYLDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVP-VELRECVGLVELSLEHNRLVRPLL-DFRAMAELKILRLFGNPL 278 (1088)
Q Consensus 201 ~L~L~~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~lp-~~l~~l~~L~~L~Ls~N~l~~~~~-~l~~l~~L~~L~Ls~N~l 278 (1088)
+|+|++|+++.+|..+..+++|++|+|++|+|+.+| ..|.++++|++|+|++|+++.+++ .|..+++|+.|+|++|+|
T Consensus 81 ~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 160 (290)
T 1p9a_G 81 TLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160 (290)
T ss_dssp EEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred EEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcC
Confidence 777777777777766667777777777777777665 346677777777777777776654 356677777777777777
Q ss_pred CCCcc--ccCCCCCCeEEeeCCCCCCCccccchhhhhcCcCCccccccccchh
Q 001385 279 EFLPE--ILPLLKLRHLSLANIRIVADENLRSVNVQIEMENNSYFGASRHKLS 329 (1088)
Q Consensus 279 ~~l~~--l~~l~~L~~L~L~~N~l~~~~~l~~l~~~~~l~~l~~l~l~~n~l~ 329 (1088)
+.++. +..+++|+.|+|++|.++.++.-. ..+.+|+.+++.+|.+.
T Consensus 161 ~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~-----~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 161 TELPAGLLNGLENLDTLLLQENSLYTIPKGF-----FGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCCCCCCTTT-----TTTCCCSEEECCSCCBC
T ss_pred CccCHHHhcCcCCCCEEECCCCcCCccChhh-----cccccCCeEEeCCCCcc
Confidence 75552 456677777777777776542211 12456666677766654
No 51
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.83 E-value=1.1e-19 Score=201.97 Aligned_cols=206 Identities=26% Similarity=0.302 Sum_probs=177.3
Q ss_pred CceEEeccCCCCCcccccccccccchhhcCCCCCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccC
Q 001385 93 DTVVVELAPQEEGDVATDAANVGVEMRVVKRREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDH 172 (1088)
Q Consensus 93 ~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 172 (1088)
....++++.... ..+....+..+++|++|+|++|.+++..|..|.++++|++|+|++|..+....+..+..
T Consensus 33 ~l~~L~l~~n~i---------~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~ 103 (285)
T 1ozn_A 33 ASQRIFLHGNRI---------SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHG 103 (285)
T ss_dssp TCSEEECTTSCC---------CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTT
T ss_pred CceEEEeeCCcC---------CccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcC
Confidence 445666654443 12344578899999999999999998878899999999999999997456666888999
Q ss_pred CCCccEEEccCCCCCCc-cccccCCCCCcEEEccCCCCCCCch-hhcCCCCCcEEEccCCcCcccch-hccCCCCCCEEE
Q 001385 173 WKTVTAVSLCGLGLSAL-PVDLTRLPVLEKLYLDNNKLSTLPP-ELGAMKNLKVLIVDNNMLVCVPV-ELRECVGLVELS 249 (1088)
Q Consensus 173 l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~N~l~~lp~-~l~~l~~L~~L~Ls~N~l~~lp~-~l~~l~~L~~L~ 249 (1088)
+++|++|+|++|.++.+ |..+..+++|++|+|++|+++.++. .+..+++|++|+|++|.++.++. .+..+++|+.|+
T Consensus 104 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 183 (285)
T 1ozn_A 104 LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLL 183 (285)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEE
Confidence 99999999999999977 4568899999999999999997775 48899999999999999998876 488999999999
Q ss_pred eccCCCCCCc-ccccCCccccEEEecCCCCCCCc--cccCCCCCCeEEeeCCCCCCCcccc
Q 001385 250 LEHNRLVRPL-LDFRAMAELKILRLFGNPLEFLP--EILPLLKLRHLSLANIRIVADENLR 307 (1088)
Q Consensus 250 Ls~N~l~~~~-~~l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~L~~N~l~~~~~l~ 307 (1088)
|++|.+++.. ..|..+++|+.|+|++|.++.++ .+..+++|+.|+|++|++.+...+.
T Consensus 184 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~ 244 (285)
T 1ozn_A 184 LHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR 244 (285)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH
T ss_pred CCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH
Confidence 9999999875 47999999999999999999666 4889999999999999998865554
No 52
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.83 E-value=1e-19 Score=222.40 Aligned_cols=253 Identities=16% Similarity=0.152 Sum_probs=172.6
Q ss_pred hhhcCCCCCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCccc-cccCC
Q 001385 118 MRVVKRREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPV-DLTRL 196 (1088)
Q Consensus 118 ~~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~-~l~~l 196 (1088)
...|..+++|++|+|++|.+++..+..|.++++|++|+|++|. +....+..|..+++|++|+|++|.++.++. .+.++
T Consensus 45 ~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l 123 (570)
T 2z63_A 45 SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL 123 (570)
T ss_dssp TTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTC
T ss_pred hhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCc-CCccCHhhhcCccccccccccccccccCCCcccccc
Confidence 3567888888888888888887667778888888888888887 566666788888888888888888887775 57888
Q ss_pred CCCcEEEccCCCCCC--CchhhcCCCCCcEEEccCCcCcccc-hhccCCCCC----CEEEeccCCCCCCc----------
Q 001385 197 PVLEKLYLDNNKLST--LPPELGAMKNLKVLIVDNNMLVCVP-VELRECVGL----VELSLEHNRLVRPL---------- 259 (1088)
Q Consensus 197 ~~L~~L~L~~N~l~~--lp~~l~~l~~L~~L~Ls~N~l~~lp-~~l~~l~~L----~~L~Ls~N~l~~~~---------- 259 (1088)
++|++|+|++|.++. +|..+.++++|++|++++|.++.++ ..+..+++| +.|++++|.+.+..
T Consensus 124 ~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~ 203 (570)
T 2z63_A 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLH 203 (570)
T ss_dssp TTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEE
T ss_pred ccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcce
Confidence 888888888888874 6788888888888888888887543 445555555 55666655543321
Q ss_pred ------------------------------------------------------------------------ccccCCcc
Q 001385 260 ------------------------------------------------------------------------LDFRAMAE 267 (1088)
Q Consensus 260 ------------------------------------------------------------------------~~l~~l~~ 267 (1088)
..+..+++
T Consensus 204 ~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~ 283 (570)
T 2z63_A 204 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTN 283 (570)
T ss_dssp EEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTT
T ss_pred eEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCc
Confidence 12344567
Q ss_pred ccEEEecCCCCCCCc-cccCCCCCCeEEeeCCCCCCCccc-----cchhh----------hhcCcCCccccccccchhhh
Q 001385 268 LKILRLFGNPLEFLP-EILPLLKLRHLSLANIRIVADENL-----RSVNV----------QIEMENNSYFGASRHKLSAF 331 (1088)
Q Consensus 268 L~~L~Ls~N~l~~l~-~l~~l~~L~~L~L~~N~l~~~~~l-----~~l~~----------~~~l~~l~~l~l~~n~l~~~ 331 (1088)
|+.|++++|.++.+| .+..+ +|++|++++|.+...+.. ..+.+ ...+++|+.++++.|.+...
T Consensus 284 L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~ 362 (570)
T 2z63_A 284 VSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFK 362 (570)
T ss_dssp CSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEE
T ss_pred ccEEEecCccchhhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCcc
Confidence 788888888777555 34455 777777777777653321 10000 02356666677777666554
Q ss_pred ---HHhhhcccCCCCcchhHHHhhhhcCCCCcc-ccccccccccccceeeccCCh
Q 001385 332 ---FSLIFRFSSCHHPLLASALAKIMQDQENRV-VVGKDENAVRQLISMISSDNR 382 (1088)
Q Consensus 332 ---~~~l~~l~~l~~l~l~~~L~~i~~l~~N~l-~ip~~~~~Lp~L~~L~Ls~N~ 382 (1088)
+..+..+.+++. +++.+|.+ .++..+..+++|+.|++++|.
T Consensus 363 ~~~~~~~~~~~~L~~----------L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~ 407 (570)
T 2z63_A 363 GCCSQSDFGTTSLKY----------LDLSFNGVITMSSNFLGLEQLEHLDFQHSN 407 (570)
T ss_dssp EEEEHHHHTCSCCCE----------EECCSCSEEEEEEEEETCTTCCEEECTTSE
T ss_pred ccccccccccCccCE----------EECCCCccccccccccccCCCCEEEccCCc
Confidence 234444555443 34556655 455557777778888777776
No 53
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.82 E-value=1.9e-20 Score=224.15 Aligned_cols=229 Identities=17% Similarity=0.106 Sum_probs=192.0
Q ss_pred CccccccC----ccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCccccccCCCCCcEEEccCCCCCCCchhh
Q 001385 141 LSDGIGVL----TRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPVLEKLYLDNNKLSTLPPEL 216 (1088)
Q Consensus 141 ~p~~l~~l----~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~N~l~~lp~~l 216 (1088)
+|..+..+ ++|+.|+|++|. +....+..|..+++|++|+|++|.++.++. +..+++|++|+|++|.|+.+|.
T Consensus 22 l~~~l~~l~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~-- 97 (487)
T 3oja_A 22 LKQALASLRQSAWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV-- 97 (487)
T ss_dssp HHHHHHTTSTTGGGCCEEECCSSC-CCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE--
T ss_pred hHHHHHHhcccCCCccEEEeeCCc-CCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC--
Confidence 44444444 489999999999 777788899999999999999999997665 8999999999999999987663
Q ss_pred cCCCCCcEEEccCCcCcccchhccCCCCCCEEEeccCCCCCCcc-cccCCccccEEEecCCCCCC-Cc-ccc-CCCCCCe
Q 001385 217 GAMKNLKVLIVDNNMLVCVPVELRECVGLVELSLEHNRLVRPLL-DFRAMAELKILRLFGNPLEF-LP-EIL-PLLKLRH 292 (1088)
Q Consensus 217 ~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~~~~-~l~~l~~L~~L~Ls~N~l~~-l~-~l~-~l~~L~~ 292 (1088)
.++|++|++++|.++.++. ..+++|+.|+|++|.+++..+ .++.+++|+.|+|++|.++. .+ .+. .+++|++
T Consensus 98 --~~~L~~L~L~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~ 173 (487)
T 3oja_A 98 --GPSIETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173 (487)
T ss_dssp --CTTCCEEECCSSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCE
T ss_pred --CCCcCEEECcCCcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccE
Confidence 3899999999999997764 357899999999999999875 68999999999999999993 33 555 7899999
Q ss_pred EEeeCCCCCCCccccchhhhhcCcCCccccccccchhhhHHhhhcccCCCCcchhHHHhhhhcCCCCcc-cccccccccc
Q 001385 293 LSLANIRIVADENLRSVNVQIEMENNSYFGASRHKLSAFFSLIFRFSSCHHPLLASALAKIMQDQENRV-VVGKDENAVR 371 (1088)
Q Consensus 293 L~L~~N~l~~~~~l~~l~~~~~l~~l~~l~l~~n~l~~~~~~l~~l~~l~~l~l~~~L~~i~~l~~N~l-~ip~~~~~Lp 371 (1088)
|+|++|.++..+... .+++|+.|++++|.++++++.+..+.++.. +++++|.+ .+|..+..++
T Consensus 174 L~Ls~N~l~~~~~~~------~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~----------L~Ls~N~l~~lp~~l~~l~ 237 (487)
T 3oja_A 174 LNLQYNFIYDVKGQV------VFAKLKTLDLSSNKLAFMGPEFQSAAGVTW----------ISLRNNKLVLIEKALRFSQ 237 (487)
T ss_dssp EECTTSCCCEEECCC------CCTTCCEEECCSSCCCEECGGGGGGTTCSE----------EECTTSCCCEECTTCCCCT
T ss_pred EecCCCccccccccc------cCCCCCEEECCCCCCCCCCHhHcCCCCccE----------EEecCCcCcccchhhccCC
Confidence 999999998864443 388999999999999999888777777765 56778887 7888899999
Q ss_pred ccceeeccCChhhhhhHHHHhc
Q 001385 372 QLISMISSDNRHVVEQACSALS 393 (1088)
Q Consensus 372 ~L~~L~Ls~N~~v~~~a~~~L~ 393 (1088)
+|..|++++|+..+......++
T Consensus 238 ~L~~L~l~~N~l~c~~~~~~~~ 259 (487)
T 3oja_A 238 NLEHFDLRGNGFHCGTLRDFFS 259 (487)
T ss_dssp TCCEEECTTCCBCHHHHHHHHT
T ss_pred CCCEEEcCCCCCcCcchHHHHH
Confidence 9999999999976554333333
No 54
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.82 E-value=3.5e-20 Score=225.58 Aligned_cols=160 Identities=16% Similarity=0.163 Sum_probs=103.4
Q ss_pred hhcCCCCCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCC--ccccccCC
Q 001385 119 RVVKRREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSA--LPVDLTRL 196 (1088)
Q Consensus 119 ~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~--lp~~l~~l 196 (1088)
..|..+++|++|+|++|.+++..|..|.++++|++|+|++|. +....+..|..+++|++|+|++|.++. +|..+.++
T Consensus 44 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l 122 (549)
T 2z81_A 44 GDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH-LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL 122 (549)
T ss_dssp STTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTC
T ss_pred hhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCc-cCccCHHHhccCCCCcEEECCCCcccccchhhhhhcc
Confidence 456677777777777777777666677777777777777777 555555667777777777777777773 35567777
Q ss_pred CCCcEEEccCCC-CCCCc-hhhcCCCCCcEEEccCCcCc-ccchhccCCCCCCEEEeccCCCCCCccc-ccCCccccEEE
Q 001385 197 PVLEKLYLDNNK-LSTLP-PELGAMKNLKVLIVDNNMLV-CVPVELRECVGLVELSLEHNRLVRPLLD-FRAMAELKILR 272 (1088)
Q Consensus 197 ~~L~~L~L~~N~-l~~lp-~~l~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~Ls~N~l~~~~~~-l~~l~~L~~L~ 272 (1088)
++|++|++++|. +..+| ..+.++++|++|++++|.++ .+|..+.++++|++|++++|.+...+.. +..+++|+.|+
T Consensus 123 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 202 (549)
T 2z81_A 123 TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLE 202 (549)
T ss_dssp TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEE
T ss_pred CCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEE
Confidence 777777777776 44554 45677777777777777776 3555565555555555555554433322 23345555555
Q ss_pred ecCCCCC
Q 001385 273 LFGNPLE 279 (1088)
Q Consensus 273 Ls~N~l~ 279 (1088)
+++|.++
T Consensus 203 L~~n~l~ 209 (549)
T 2z81_A 203 LRDTNLA 209 (549)
T ss_dssp EESCBCT
T ss_pred ccCCccc
Confidence 5555544
No 55
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.82 E-value=2.4e-20 Score=229.96 Aligned_cols=246 Identities=14% Similarity=0.059 Sum_probs=167.2
Q ss_pred cCCCCCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCc---cccccCCC
Q 001385 121 VKRREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSAL---PVDLTRLP 197 (1088)
Q Consensus 121 ~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~l---p~~l~~l~ 197 (1088)
+..+++|+.|++++|.+ +.+| .+ .+++|+.|++++|.... +..+..+++|++|+|++|.++.+ |..+..++
T Consensus 303 l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~---~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~ 376 (606)
T 3vq2_A 303 VPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSI---SFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTN 376 (606)
T ss_dssp CCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCE---ECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCS
T ss_pred ccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCcc---chhhccCCCCCEEECcCCccCCCcchhhhhccCC
Confidence 44455555666666655 3344 33 56666666666664111 11445667777777777777644 56677777
Q ss_pred CCcEEEccCCCCCCCchhhcCCCCCcEEEccCCcCcccc--hhccCCCCCCEEEeccCCCCCCcc-cccCCccccEEEec
Q 001385 198 VLEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVP--VELRECVGLVELSLEHNRLVRPLL-DFRAMAELKILRLF 274 (1088)
Q Consensus 198 ~L~~L~L~~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~lp--~~l~~l~~L~~L~Ls~N~l~~~~~-~l~~l~~L~~L~Ls 274 (1088)
+|++|++++|.++.+|..+..+++|+.|++++|.+..++ ..+.++++|+.|++++|.+.+..+ .+..+++|+.|+++
T Consensus 377 ~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 456 (606)
T 3vq2_A 377 SLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMA 456 (606)
T ss_dssp CCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECT
T ss_pred cccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECC
Confidence 777777777777777777777777888888777777443 366777788888888887776553 57777788888888
Q ss_pred CCCCCC--Cc-cccCCCCCCeEEeeCCCCCCC--ccccchhhhhcCcCCccccccccchhhhH-HhhhcccCCCCcchhH
Q 001385 275 GNPLEF--LP-EILPLLKLRHLSLANIRIVAD--ENLRSVNVQIEMENNSYFGASRHKLSAFF-SLIFRFSSCHHPLLAS 348 (1088)
Q Consensus 275 ~N~l~~--l~-~l~~l~~L~~L~L~~N~l~~~--~~l~~l~~~~~l~~l~~l~l~~n~l~~~~-~~l~~l~~l~~l~l~~ 348 (1088)
+|.++. ++ .+..+++|++|+|++|.++.. ..+. .+++|+.|++++|.+.+.. ..+..+.+++.
T Consensus 457 ~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~----- 525 (606)
T 3vq2_A 457 GNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFD------TLHRLQLLNMSHNNLLFLDSSHYNQLYSLST----- 525 (606)
T ss_dssp TCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT------TCTTCCEEECCSSCCSCEEGGGTTTCTTCCE-----
T ss_pred CCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhc------ccccCCEEECCCCcCCCcCHHHccCCCcCCE-----
Confidence 887763 34 466778888888888877753 1222 3777888888888887764 34555666654
Q ss_pred HHhhhhcCCCCcc-cccccccccc-ccceeeccCChhhhhhH
Q 001385 349 ALAKIMQDQENRV-VVGKDENAVR-QLISMISSDNRHVVEQA 388 (1088)
Q Consensus 349 ~L~~i~~l~~N~l-~ip~~~~~Lp-~L~~L~Ls~N~~v~~~a 388 (1088)
+++++|.+ .+|..+..++ +|+.|++++|+..++..
T Consensus 526 -----L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 526 -----LDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp -----EECTTSCCCCEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred -----EECCCCcCcccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 46777877 7788888887 59999999998665443
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.82 E-value=7.1e-20 Score=205.56 Aligned_cols=222 Identities=17% Similarity=0.136 Sum_probs=185.2
Q ss_pred CceEEeccCCCCCcccccccccccchhhcCCCCCccEEEeeCCCCCCC--CccccccCccccEEeCcCCCCCCCCccccc
Q 001385 93 DTVVVELAPQEEGDVATDAANVGVEMRVVKRREPLRAVVLTKGVGSGH--LSDGIGVLTRLMRSDLSTSGPGNNMGSGFC 170 (1088)
Q Consensus 93 ~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~--~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~ 170 (1088)
....++++..... .+....|..+++|++|+|++|.++.. .+..+..+++|++|+|++|. +. .++..+
T Consensus 29 ~l~~L~L~~n~l~---------~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~-~l~~~~ 97 (306)
T 2z66_A 29 SATRLELESNKLQ---------SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VI-TMSSNF 97 (306)
T ss_dssp TCCEEECCSSCCC---------CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EE-EEEEEE
T ss_pred CCCEEECCCCccC---------ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-cc-cChhhc
Confidence 4456666554421 23445688999999999999998743 36677889999999999998 33 456678
Q ss_pred cCCCCccEEEccCCCCCCccc--cccCCCCCcEEEccCCCCC-CCchhhcCCCCCcEEEccCCcCcc--cchhccCCCCC
Q 001385 171 DHWKTVTAVSLCGLGLSALPV--DLTRLPVLEKLYLDNNKLS-TLPPELGAMKNLKVLIVDNNMLVC--VPVELRECVGL 245 (1088)
Q Consensus 171 ~~l~~L~~L~Ls~n~l~~lp~--~l~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~Ls~N~l~~--lp~~l~~l~~L 245 (1088)
..+++|++|+|++|.++.++. .+..+++|++|++++|.++ ..+..+..+++|++|++++|.++. +|..+..+++|
T Consensus 98 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 177 (306)
T 2z66_A 98 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 177 (306)
T ss_dssp ETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred CCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCC
Confidence 899999999999999998874 6889999999999999998 555678999999999999999984 78899999999
Q ss_pred CEEEeccCCCCCCcc-cccCCccccEEEecCCCCCCCc--cccCCCCCCeEEeeCCCCCCC--ccccchhhhhcC-cCCc
Q 001385 246 VELSLEHNRLVRPLL-DFRAMAELKILRLFGNPLEFLP--EILPLLKLRHLSLANIRIVAD--ENLRSVNVQIEM-ENNS 319 (1088)
Q Consensus 246 ~~L~Ls~N~l~~~~~-~l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~L~~N~l~~~--~~l~~l~~~~~l-~~l~ 319 (1088)
++|+|++|.+++..+ .|..+++|+.|+|++|.++.++ .+..+++|+.|+|++|.+++. ..+. .+ .+|+
T Consensus 178 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~------~~~~~L~ 251 (306)
T 2z66_A 178 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ------HFPSSLA 251 (306)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCC------CCCTTCC
T ss_pred CEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHH------hhhccCC
Confidence 999999999998764 6899999999999999999554 577899999999999999874 2333 25 4899
Q ss_pred cccccccchhhh
Q 001385 320 YFGASRHKLSAF 331 (1088)
Q Consensus 320 ~l~l~~n~l~~~ 331 (1088)
.+++++|.+...
T Consensus 252 ~L~L~~N~~~~~ 263 (306)
T 2z66_A 252 FLNLTQNDFACT 263 (306)
T ss_dssp EEECTTCCEECS
T ss_pred EEEccCCCeecc
Confidence 999999998753
No 57
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.82 E-value=5.5e-20 Score=203.29 Aligned_cols=201 Identities=19% Similarity=0.215 Sum_probs=164.2
Q ss_pred CCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCcc-ccccCCCCCcEEE
Q 001385 125 EPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALP-VDLTRLPVLEKLY 203 (1088)
Q Consensus 125 ~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~ 203 (1088)
++|++|+|++|.+++..+..|.++++|++|+|++|. +....+..|..+++|++|+|++|.++.++ ..+.++++|++|+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCc-CCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 469999999999988766688899999999999998 66666778889999999999999999766 5688899999999
Q ss_pred ccCCCCCCCch-hhcCCCCCcEEEccCCcCcc--cchhccCCCCCCEEEeccCCCCCCcc-cccCCcccc----EEEecC
Q 001385 204 LDNNKLSTLPP-ELGAMKNLKVLIVDNNMLVC--VPVELRECVGLVELSLEHNRLVRPLL-DFRAMAELK----ILRLFG 275 (1088)
Q Consensus 204 L~~N~l~~lp~-~l~~l~~L~~L~Ls~N~l~~--lp~~l~~l~~L~~L~Ls~N~l~~~~~-~l~~l~~L~----~L~Ls~ 275 (1088)
+++|.++.++. .+..+++|++|++++|.++. +|..+.++++|++|+|++|++++.++ .+..+.+|+ .|++++
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~ 186 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCS
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCC
Confidence 99999987664 68889999999999999985 68889999999999999999988764 566666666 889999
Q ss_pred CCCCCCc-cccCCCCCCeEEeeCCCCCCCccccchhhhhcCcCCccccccccchhh
Q 001385 276 NPLEFLP-EILPLLKLRHLSLANIRIVADENLRSVNVQIEMENNSYFGASRHKLSA 330 (1088)
Q Consensus 276 N~l~~l~-~l~~l~~L~~L~L~~N~l~~~~~l~~l~~~~~l~~l~~l~l~~n~l~~ 330 (1088)
|.++.++ ......+|+.|+|++|.++..+.-. +..+++|+.+++++|.+..
T Consensus 187 n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 187 NPMNFIQPGAFKEIRLKELALDTNQLKSVPDGI----FDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp SCCCEECTTSSCSCCEEEEECCSSCCSCCCTTT----TTTCCSCCEEECCSSCBCC
T ss_pred CcccccCccccCCCcccEEECCCCceeecCHhH----hcccccccEEEccCCcccc
Confidence 9998444 4445568999999999998753211 2247888999999998765
No 58
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.81 E-value=2.4e-19 Score=224.26 Aligned_cols=253 Identities=19% Similarity=0.108 Sum_probs=143.0
Q ss_pred hcCCCCCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCC---------------------------CCCccccccC
Q 001385 120 VVKRREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPG---------------------------NNMGSGFCDH 172 (1088)
Q Consensus 120 ~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~---------------------------~~~~~~~~~~ 172 (1088)
.+..+++|+.|++++|.+.+..+..|.++++|++|+|++|.+. ....+..+..
T Consensus 324 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 403 (680)
T 1ziw_A 324 SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW 403 (680)
T ss_dssp TTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTT
T ss_pred hcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhC
Confidence 5677888888888888888877777888888888888776521 1122333444
Q ss_pred CCCccEEEccCCCCC-Ccc-ccccCCCCCcEEEccCCCCCCC-chhhcCCCCCcEEEccCCcCc---ccchhccCCCCCC
Q 001385 173 WKTVTAVSLCGLGLS-ALP-VDLTRLPVLEKLYLDNNKLSTL-PPELGAMKNLKVLIVDNNMLV---CVPVELRECVGLV 246 (1088)
Q Consensus 173 l~~L~~L~Ls~n~l~-~lp-~~l~~l~~L~~L~L~~N~l~~l-p~~l~~l~~L~~L~Ls~N~l~---~lp~~l~~l~~L~ 246 (1088)
+++|++|+|++|.++ .+| ..+..+++|++|++++|++..+ +..+..+++|+.|++++|.++ .+|..+.++++|+
T Consensus 404 l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~ 483 (680)
T 1ziw_A 404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLT 483 (680)
T ss_dssp CTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCC
T ss_pred CCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCC
Confidence 444444444444443 233 2344444444444444444422 233444455555555555443 3455556666666
Q ss_pred EEEeccCCCCCCcc-cccCCccccEEEecCCCCCCCc----------cccCCCCCCeEEeeCCCCCCCccccchhhhhcC
Q 001385 247 ELSLEHNRLVRPLL-DFRAMAELKILRLFGNPLEFLP----------EILPLLKLRHLSLANIRIVADENLRSVNVQIEM 315 (1088)
Q Consensus 247 ~L~Ls~N~l~~~~~-~l~~l~~L~~L~Ls~N~l~~l~----------~l~~l~~L~~L~L~~N~l~~~~~l~~l~~~~~l 315 (1088)
.|+|++|+++++++ .|..+++|+.|+|++|.++.++ .+..+++|+.|+|++|.++..+.- .+..+
T Consensus 484 ~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~----~~~~l 559 (680)
T 1ziw_A 484 ILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVE----VFKDL 559 (680)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTT----TTTTC
T ss_pred EEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHH----Hcccc
Confidence 66666666665554 3566666666666666665321 145566666666666666653221 01235
Q ss_pred cCCccccccccchhhhHHhh-hcccCCCCcchhHHHhhhhcCCCCcc-cccc-ccc-cccccceeeccCChhhhh
Q 001385 316 ENNSYFGASRHKLSAFFSLI-FRFSSCHHPLLASALAKIMQDQENRV-VVGK-DEN-AVRQLISMISSDNRHVVE 386 (1088)
Q Consensus 316 ~~l~~l~l~~n~l~~~~~~l-~~l~~l~~l~l~~~L~~i~~l~~N~l-~ip~-~~~-~Lp~L~~L~Ls~N~~v~~ 386 (1088)
++|+.+++++|.++.+++.. ..+.+++. +++.+|.+ .++. .+. .+++|+.|++++|+..++
T Consensus 560 ~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~----------L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~ 624 (680)
T 1ziw_A 560 FELKIIDLGLNNLNTLPASVFNNQVSLKS----------LNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCT 624 (680)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCE----------EECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBC
T ss_pred cCcceeECCCCCCCcCCHhHhCCCCCCCE----------EECCCCcCCccChhHhcccccccCEEEccCCCcccC
Confidence 66666666666666655433 34444443 34566665 3332 233 577777888887776554
No 59
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.81 E-value=6.4e-20 Score=210.39 Aligned_cols=240 Identities=19% Similarity=0.183 Sum_probs=181.5
Q ss_pred CceEEeccCCCCCcccccccccccchhhcCCCCCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccC
Q 001385 93 DTVVVELAPQEEGDVATDAANVGVEMRVVKRREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDH 172 (1088)
Q Consensus 93 ~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 172 (1088)
....++++..... .+....+..+++|++|+|++|.+++..+..|.++++|++|+|++|+ +....+..+..
T Consensus 53 ~L~~L~l~~n~i~---------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~ 122 (353)
T 2z80_A 53 AVKSLDLSNNRIT---------YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWFKP 122 (353)
T ss_dssp TCCEEECTTSCCC---------EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSSCCHHHHTT
T ss_pred cCcEEECCCCcCc---------ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc-CCcCCHhHhCC
Confidence 4456677554431 2343578899999999999999998778889999999999999998 56666666899
Q ss_pred CCCccEEEccCCCCCCccc--cccCCCCCcEEEccCC-CCCCC-chhhcCCCCCcEEEccCCcCccc-chhccCCCCCCE
Q 001385 173 WKTVTAVSLCGLGLSALPV--DLTRLPVLEKLYLDNN-KLSTL-PPELGAMKNLKVLIVDNNMLVCV-PVELRECVGLVE 247 (1088)
Q Consensus 173 l~~L~~L~Ls~n~l~~lp~--~l~~l~~L~~L~L~~N-~l~~l-p~~l~~l~~L~~L~Ls~N~l~~l-p~~l~~l~~L~~ 247 (1088)
+++|++|+|++|.++.+|. .+..+++|++|++++| .++.+ +..+..+++|++|++++|.++.+ |..+.++++|++
T Consensus 123 l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 202 (353)
T 2z80_A 123 LSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSH 202 (353)
T ss_dssp CTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEE
T ss_pred CccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCe
Confidence 9999999999999999987 6889999999999999 57755 46789999999999999999955 788999999999
Q ss_pred EEeccCCCCCCccc-ccCCccccEEEecCCCCCCCc-----cccCCCCCCeEEeeCCCCCCCccccch-hhhhcCcCCcc
Q 001385 248 LSLEHNRLVRPLLD-FRAMAELKILRLFGNPLEFLP-----EILPLLKLRHLSLANIRIVADENLRSV-NVQIEMENNSY 320 (1088)
Q Consensus 248 L~Ls~N~l~~~~~~-l~~l~~L~~L~Ls~N~l~~l~-----~l~~l~~L~~L~L~~N~l~~~~~l~~l-~~~~~l~~l~~ 320 (1088)
|++++|.+...+.. +..+++|+.|++++|.++.++ .......++.++|++|.+++.. +..+ .....+++|+.
T Consensus 203 L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~-l~~l~~~l~~l~~L~~ 281 (353)
T 2z80_A 203 LILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDES-LFQVMKLLNQISGLLE 281 (353)
T ss_dssp EEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHH-HHHHHHHHHTCTTCCE
T ss_pred ecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcc-hhhhHHHHhcccCCCE
Confidence 99999999877653 556899999999999998433 2224456666677766665411 1111 01223666667
Q ss_pred ccccccchhhhHHhh-hcccCCCC
Q 001385 321 FGASRHKLSAFFSLI-FRFSSCHH 343 (1088)
Q Consensus 321 l~l~~n~l~~~~~~l-~~l~~l~~ 343 (1088)
|++++|.++.++..+ ..+.+++.
T Consensus 282 L~Ls~N~l~~i~~~~~~~l~~L~~ 305 (353)
T 2z80_A 282 LEFSRNQLKSVPDGIFDRLTSLQK 305 (353)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCE
T ss_pred EECCCCCCCccCHHHHhcCCCCCE
Confidence 777777766665543 34554443
No 60
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.81 E-value=1.3e-19 Score=231.72 Aligned_cols=137 Identities=23% Similarity=0.217 Sum_probs=94.1
Q ss_pred hhhcCCCCCccEEEeeCCCCCCCC-ccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCC-cccc--c
Q 001385 118 MRVVKRREPLRAVVLTKGVGSGHL-SDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSA-LPVD--L 193 (1088)
Q Consensus 118 ~~~~~~l~~L~~L~Ls~n~i~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~-lp~~--l 193 (1088)
...|.++++|++|+|++|.+.+.+ |..|.++++|++|+|++|. +....|..|.++++|++|+|++|.++. +|.. +
T Consensus 41 ~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 119 (844)
T 3j0a_A 41 ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK-IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYF 119 (844)
T ss_dssp SSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC-CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCC
T ss_pred hhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc-CcccCHhHccCCcccCEeeCcCCCCCcccccCccc
Confidence 356777888888888888555444 6677888888888888887 566667778888888888888888774 4443 7
Q ss_pred cCCCCCcEEEccCCCCCCC--chhhcCCCCCcEEEccCCcCcc-cchhccCC--CCCCEEEeccCCC
Q 001385 194 TRLPVLEKLYLDNNKLSTL--PPELGAMKNLKVLIVDNNMLVC-VPVELREC--VGLVELSLEHNRL 255 (1088)
Q Consensus 194 ~~l~~L~~L~L~~N~l~~l--p~~l~~l~~L~~L~Ls~N~l~~-lp~~l~~l--~~L~~L~Ls~N~l 255 (1088)
.++++|++|+|++|.++.+ +..|.++++|++|+|++|.++. .+..+..+ ++|+.|+|++|.+
T Consensus 120 ~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l 186 (844)
T 3j0a_A 120 RNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSL 186 (844)
T ss_dssp SSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBS
T ss_pred cccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCcc
Confidence 7788888888888888744 3467788888888888887762 33333333 3444444444433
No 61
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.81 E-value=3.4e-19 Score=222.81 Aligned_cols=221 Identities=18% Similarity=0.144 Sum_probs=154.3
Q ss_pred chhhcCCCCCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCcc-ccccC
Q 001385 117 EMRVVKRREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALP-VDLTR 195 (1088)
Q Consensus 117 ~~~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp-~~l~~ 195 (1088)
....|.++++|++|+|++|.+++..|..|.++++|++|+|++|. +....+..|.++++|++|+|++|.++.++ ..+.+
T Consensus 41 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 119 (680)
T 1ziw_A 41 PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE-LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVK 119 (680)
T ss_dssp CGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTT
T ss_pred CHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc-cCccChhhhccCCCCCEEECCCCccCccChhHccc
Confidence 33567778888888888888888777788888888888888887 55555557788888888888888888776 46778
Q ss_pred CCCCcEEEccCCCCCCC-chhhcCCCCCcEEEccCCcCcccchh-c--cCCCCCCEEEeccCCCCCCcc-cccCC-----
Q 001385 196 LPVLEKLYLDNNKLSTL-PPELGAMKNLKVLIVDNNMLVCVPVE-L--RECVGLVELSLEHNRLVRPLL-DFRAM----- 265 (1088)
Q Consensus 196 l~~L~~L~L~~N~l~~l-p~~l~~l~~L~~L~Ls~N~l~~lp~~-l--~~l~~L~~L~Ls~N~l~~~~~-~l~~l----- 265 (1088)
+++|++|+|++|.++.+ |..+.++++|++|++++|.++.++.. + ..+++|+.|++++|.+++..+ .+..+
T Consensus 120 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 199 (680)
T 1ziw_A 120 QKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFG 199 (680)
T ss_dssp CTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECE
T ss_pred cCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhh
Confidence 88888888888888743 45677888888888888888765542 2 356788888888888877653 33333
Q ss_pred ----------------------ccccEEEecCCCCCC--CccccCCC--CCCeEEeeCCCCCCCc--cccchhhhhcCcC
Q 001385 266 ----------------------AELKILRLFGNPLEF--LPEILPLL--KLRHLSLANIRIVADE--NLRSVNVQIEMEN 317 (1088)
Q Consensus 266 ----------------------~~L~~L~Ls~N~l~~--l~~l~~l~--~L~~L~L~~N~l~~~~--~l~~l~~~~~l~~ 317 (1088)
++|+.|++++|.++. ...+..++ +|+.|+|++|.++... .+. .+++
T Consensus 200 L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~------~l~~ 273 (680)
T 1ziw_A 200 LFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFA------WLPQ 273 (680)
T ss_dssp EECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTT------TCTT
T ss_pred hhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCccccc------Cccc
Confidence 455666666666662 22344443 4888888888776531 222 3677
Q ss_pred CccccccccchhhhHH-hhhcccCCCCc
Q 001385 318 NSYFGASRHKLSAFFS-LIFRFSSCHHP 344 (1088)
Q Consensus 318 l~~l~l~~n~l~~~~~-~l~~l~~l~~l 344 (1088)
|+.+++++|.+.+.++ .+..+.+++.+
T Consensus 274 L~~L~L~~n~l~~~~~~~~~~l~~L~~L 301 (680)
T 1ziw_A 274 LEYFFLEYNNIQHLFSHSLHGLFNVRYL 301 (680)
T ss_dssp CCEEECCSCCBSEECTTTTTTCTTCCEE
T ss_pred ccEeeCCCCccCccChhhhcCCCCccEE
Confidence 8888888888776553 44455555443
No 62
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.81 E-value=4.4e-19 Score=216.96 Aligned_cols=227 Identities=20% Similarity=0.154 Sum_probs=143.0
Q ss_pred CCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCccccccCCCCCcEEEc
Q 001385 125 EPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPVLEKLYL 204 (1088)
Q Consensus 125 ~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 204 (1088)
++|+.|+|++|.|+. +|. .+++|++|+|++|+ +.. +|. .+++|++|+|++|.|+.+|. .+++|++|+|
T Consensus 61 ~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~-l~~-lp~---~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L 128 (622)
T 3g06_A 61 AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQ-LTS-LPV---LPPGLLELSIFSNPLTHLPA---LPSGLCKLWI 128 (622)
T ss_dssp TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCC-CSC-CCC---CCTTCCEEEECSCCCCCCCC---CCTTCCEEEC
T ss_pred CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCc-CCc-CCC---CCCCCCEEECcCCcCCCCCC---CCCCcCEEEC
Confidence 678888888887764 554 46778888888887 333 333 56777777777777777765 4566777777
Q ss_pred cCCCCCCCchhhcCCCCCcEEEccCCcCcccchhcc-----------------CCCCCCEEEeccCCCCCCcccccCCcc
Q 001385 205 DNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVELR-----------------ECVGLVELSLEHNRLVRPLLDFRAMAE 267 (1088)
Q Consensus 205 ~~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~lp~~l~-----------------~l~~L~~L~Ls~N~l~~~~~~l~~l~~ 267 (1088)
++|+++.+|.. +++|++|+|++|.++.+|..+. .+++|+.|+|++|.+++++.. +++
T Consensus 129 ~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l~~~---~~~ 202 (622)
T 3g06_A 129 FGNQLTSLPVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPTL---PSE 202 (622)
T ss_dssp CSSCCSCCCCC---CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCC---CTT
T ss_pred CCCCCCcCCCC---CCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCCCCc---cch
Confidence 77777766653 3667777777777666554221 124455555555555543321 245
Q ss_pred ccEEEecCCCCCCCccccCCCCCCeEEeeCCCCCCCccccchhhhhcCcCCccccccccchhhhHHhhhcccCCCCcchh
Q 001385 268 LKILRLFGNPLEFLPEILPLLKLRHLSLANIRIVADENLRSVNVQIEMENNSYFGASRHKLSAFFSLIFRFSSCHHPLLA 347 (1088)
Q Consensus 268 L~~L~Ls~N~l~~l~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~~~~l~~l~~l~l~~n~l~~~~~~l~~l~~l~~l~l~ 347 (1088)
|+.|++++|.++.++.. +++|++|+|++|.|+.++ . .+++|+.|++++|.++.++. .+.++..
T Consensus 203 L~~L~L~~N~l~~l~~~--~~~L~~L~Ls~N~L~~lp--~------~l~~L~~L~Ls~N~L~~lp~---~~~~L~~---- 265 (622)
T 3g06_A 203 LYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLTSLP--V------LPSELKELMVSGNRLTSLPM---LPSGLLS---- 265 (622)
T ss_dssp CCEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCC--C------CCTTCCEEECCSSCCSCCCC---CCTTCCE----
T ss_pred hhEEECcCCcccccCCC--CCCCCEEEccCCccCcCC--C------CCCcCcEEECCCCCCCcCCc---ccccCcE----
Confidence 55555555555544432 356677777777666543 1 25667777777777776554 2233332
Q ss_pred HHHhhhhcCCCCcc-ccccccccccccceeeccCChhhhhhHHHHhc
Q 001385 348 SALAKIMQDQENRV-VVGKDENAVRQLISMISSDNRHVVEQACSALS 393 (1088)
Q Consensus 348 ~~L~~i~~l~~N~l-~ip~~~~~Lp~L~~L~Ls~N~~v~~~a~~~L~ 393 (1088)
+++.+|.+ .+|..+..+++|+.|++++|+. .......+.
T Consensus 266 ------L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l-~~~~~~~l~ 305 (622)
T 3g06_A 266 ------LSVYRNQLTRLPESLIHLSSETTVNLEGNPL-SERTLQALR 305 (622)
T ss_dssp ------EECCSSCCCSCCGGGGGSCTTCEEECCSCCC-CHHHHHHHH
T ss_pred ------EeCCCCCCCcCCHHHhhccccCEEEecCCCC-CCcCHHHHH
Confidence 45777877 7888899999999999999983 333333333
No 63
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.81 E-value=2.5e-19 Score=219.06 Aligned_cols=118 Identities=14% Similarity=0.141 Sum_probs=79.2
Q ss_pred CCCCcEEEccCCcCccc---chhccCCCCCCEEEeccCCCCCCcccccCCccccEEEecCCCCCCC-c--cccCCCCCCe
Q 001385 219 MKNLKVLIVDNNMLVCV---PVELRECVGLVELSLEHNRLVRPLLDFRAMAELKILRLFGNPLEFL-P--EILPLLKLRH 292 (1088)
Q Consensus 219 l~~L~~L~Ls~N~l~~l---p~~l~~l~~L~~L~Ls~N~l~~~~~~l~~l~~L~~L~Ls~N~l~~l-~--~l~~l~~L~~ 292 (1088)
+++|++|++++|.++.+ |..+.++++|++|++++|.+.+.++.+..+++|+.|++++|.++.. + .+..+++|++
T Consensus 346 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 425 (570)
T 2z63_A 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425 (570)
T ss_dssp CTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCE
T ss_pred CCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCE
Confidence 45566666666666533 5567778888888888888887776688888888888888887733 2 4667888888
Q ss_pred EEeeCCCCCCC--ccccchhhhhcCcCCccccccccchhh--hHHhhhcccCCC
Q 001385 293 LSLANIRIVAD--ENLRSVNVQIEMENNSYFGASRHKLSA--FFSLIFRFSSCH 342 (1088)
Q Consensus 293 L~L~~N~l~~~--~~l~~l~~~~~l~~l~~l~l~~n~l~~--~~~~l~~l~~l~ 342 (1088)
|++++|.+... ..+. .+++|+.|++++|.+.. .|..+..+.+++
T Consensus 426 L~l~~n~l~~~~~~~~~------~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~ 473 (570)
T 2z63_A 426 LDISHTHTRVAFNGIFN------GLSSLEVLKMAGNSFQENFLPDIFTELRNLT 473 (570)
T ss_dssp EECTTSCCEECCTTTTT------TCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred EeCcCCcccccchhhhh------cCCcCcEEECcCCcCccccchhhhhcccCCC
Confidence 88888877652 1122 36667777777776652 333344444444
No 64
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.81 E-value=7.9e-20 Score=222.51 Aligned_cols=178 Identities=18% Similarity=0.156 Sum_probs=160.5
Q ss_pred CCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCcccc-ccCCCCCcEEE
Q 001385 125 EPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVD-LTRLPVLEKLY 203 (1088)
Q Consensus 125 ~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~ 203 (1088)
++|++|+|++|.+++..|..|.++++|++|+|++|+ +....+..|..+++|++|+|++|.++.++.. +..+++|++|+
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR-INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCC-cCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence 689999999999998888899999999999999999 6777778899999999999999999988765 99999999999
Q ss_pred ccCCCCCC--CchhhcCCCCCcEEEccCCc-Ccccc-hhccCCCCCCEEEeccCCCCCCc-ccccCCccccEEEecCCCC
Q 001385 204 LDNNKLST--LPPELGAMKNLKVLIVDNNM-LVCVP-VELRECVGLVELSLEHNRLVRPL-LDFRAMAELKILRLFGNPL 278 (1088)
Q Consensus 204 L~~N~l~~--lp~~l~~l~~L~~L~Ls~N~-l~~lp-~~l~~l~~L~~L~Ls~N~l~~~~-~~l~~l~~L~~L~Ls~N~l 278 (1088)
|++|.++. +|..+.++++|++|++++|. +..+| ..+.++++|++|++++|.+++.. ..+..+++|+.|+++.|.+
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 184 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES 184 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcc
Confidence 99999994 56789999999999999998 66776 57899999999999999998855 4799999999999999999
Q ss_pred CCCcc--ccCCCCCCeEEeeCCCCCCC
Q 001385 279 EFLPE--ILPLLKLRHLSLANIRIVAD 303 (1088)
Q Consensus 279 ~~l~~--l~~l~~L~~L~L~~N~l~~~ 303 (1088)
..++. +..+++|++|++++|.+++.
T Consensus 185 ~~~~~~~~~~l~~L~~L~L~~n~l~~~ 211 (549)
T 2z81_A 185 AFLLEIFADILSSVRYLELRDTNLARF 211 (549)
T ss_dssp TTHHHHHHHSTTTBSEEEEESCBCTTC
T ss_pred cccchhhHhhcccccEEEccCCccccc
Confidence 87664 34789999999999999874
No 65
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.80 E-value=4.5e-19 Score=197.44 Aligned_cols=181 Identities=21% Similarity=0.204 Sum_probs=161.7
Q ss_pred CCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCccccccCCCCCcEEEc
Q 001385 125 EPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPVLEKLYL 204 (1088)
Q Consensus 125 ~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 204 (1088)
++++.|+|++|.+++..+..|.++++|++|+|++|. +....+ ...+++|++|+|++|.|+.+|..+..+++|++|+|
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~--~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l 107 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQV--DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDV 107 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEEC--CSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCcccC--CCCCCcCCEEECCCCcCCcCchhhccCCCCCEEEC
Confidence 689999999999998888899999999999999998 444333 26899999999999999999999999999999999
Q ss_pred cCCCCCCCc-hhhcCCCCCcEEEccCCcCcccchh-ccCCCCCCEEEeccCCCCCCcc-cccCCccccEEEecCCCCCCC
Q 001385 205 DNNKLSTLP-PELGAMKNLKVLIVDNNMLVCVPVE-LRECVGLVELSLEHNRLVRPLL-DFRAMAELKILRLFGNPLEFL 281 (1088)
Q Consensus 205 ~~N~l~~lp-~~l~~l~~L~~L~Ls~N~l~~lp~~-l~~l~~L~~L~Ls~N~l~~~~~-~l~~l~~L~~L~Ls~N~l~~l 281 (1088)
++|+|+.+| ..|..+++|++|+|++|+++.+|.. +..+++|+.|+|++|+++.+++ .|..+++|+.|+|++|+|+.+
T Consensus 108 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~i 187 (290)
T 1p9a_G 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI 187 (290)
T ss_dssp CSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCcc
Confidence 999999887 5689999999999999999988764 5889999999999999999886 478899999999999999976
Q ss_pred c-cccCCCCCCeEEeeCCCCCCCccccc
Q 001385 282 P-EILPLLKLRHLSLANIRIVADENLRS 308 (1088)
Q Consensus 282 ~-~l~~l~~L~~L~L~~N~l~~~~~l~~ 308 (1088)
| .+..+.+|+.|+|++|++.+.+.+..
T Consensus 188 p~~~~~~~~L~~l~L~~Np~~C~c~~~~ 215 (290)
T 1p9a_G 188 PKGFFGSHLLPFAFLHGNPWLCNCEILY 215 (290)
T ss_dssp CTTTTTTCCCSEEECCSCCBCCSGGGHH
T ss_pred ChhhcccccCCeEEeCCCCccCcCccHH
Confidence 6 57788899999999999988655544
No 66
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.80 E-value=5.1e-19 Score=195.14 Aligned_cols=197 Identities=23% Similarity=0.285 Sum_probs=168.3
Q ss_pred hcCCCCCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCcccc-ccCCCC
Q 001385 120 VVKRREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVD-LTRLPV 198 (1088)
Q Consensus 120 ~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~ 198 (1088)
.+..+++|+.|++++|.+.. + ..+..+++|++|+|++|. +... ..+..+++|++|+|++|.++.++.. +..+++
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~-l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 110 (272)
T 3rfs_A 36 TQNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNK-LHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTN 110 (272)
T ss_dssp CHHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSC-CCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred ccccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCC-CCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcC
Confidence 34567889999999999875 3 358899999999999998 4442 4788999999999999999988764 689999
Q ss_pred CcEEEccCCCCCCCchh-hcCCCCCcEEEccCCcCcccchh-ccCCCCCCEEEeccCCCCCCcc-cccCCccccEEEecC
Q 001385 199 LEKLYLDNNKLSTLPPE-LGAMKNLKVLIVDNNMLVCVPVE-LRECVGLVELSLEHNRLVRPLL-DFRAMAELKILRLFG 275 (1088)
Q Consensus 199 L~~L~L~~N~l~~lp~~-l~~l~~L~~L~Ls~N~l~~lp~~-l~~l~~L~~L~Ls~N~l~~~~~-~l~~l~~L~~L~Ls~ 275 (1088)
|++|+|++|+++.++.. +..+++|++|++++|.++.++.. +.++++|+.|++++|++++.++ .|..+++|+.|+|++
T Consensus 111 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 190 (272)
T 3rfs_A 111 LKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQ 190 (272)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCC
Confidence 99999999999977754 78999999999999999977764 5899999999999999998876 478999999999999
Q ss_pred CCCCCCc--cccCCCCCCeEEeeCCCCCCCccccchhhhhcCcCCccccccccchhhhH
Q 001385 276 NPLEFLP--EILPLLKLRHLSLANIRIVADENLRSVNVQIEMENNSYFGASRHKLSAFF 332 (1088)
Q Consensus 276 N~l~~l~--~l~~l~~L~~L~L~~N~l~~~~~l~~l~~~~~l~~l~~l~l~~n~l~~~~ 332 (1088)
|.++.++ .+..+++|+.|+|++|.+.+. +++++++++..|.+++..
T Consensus 191 N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-----------~~~l~~l~~~~n~~~g~i 238 (272)
T 3rfs_A 191 NQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-----------CPGIRYLSEWINKHSGVV 238 (272)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCBCCC-----------TTTTHHHHHHHHHTGGGB
T ss_pred CcCCccCHHHHhCCcCCCEEEccCCCcccc-----------CcHHHHHHHHHHhCCCcc
Confidence 9999555 378899999999999998764 566777888888887644
No 67
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.80 E-value=1e-18 Score=192.49 Aligned_cols=178 Identities=28% Similarity=0.325 Sum_probs=104.7
Q ss_pred CCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCccc-cccCCCCCcEEE
Q 001385 125 EPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPV-DLTRLPVLEKLY 203 (1088)
Q Consensus 125 ~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~ 203 (1088)
++|+.|+|++|.++...+..|.++++|++|+|++|. +....+..|..+++|++|+|++|.++.+|. .+..+++|++|+
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 115 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELR 115 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEE
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEE
Confidence 356666666666655444456666666666666665 444444455566666666666666665554 345566666666
Q ss_pred ccCCCCCCCch-hhcCCCCCcEEEccCCcCcccchh-ccCCCCCCEEEeccCCCCCCcc-cccCCccccEEEecCCCCCC
Q 001385 204 LDNNKLSTLPP-ELGAMKNLKVLIVDNNMLVCVPVE-LRECVGLVELSLEHNRLVRPLL-DFRAMAELKILRLFGNPLEF 280 (1088)
Q Consensus 204 L~~N~l~~lp~-~l~~l~~L~~L~Ls~N~l~~lp~~-l~~l~~L~~L~Ls~N~l~~~~~-~l~~l~~L~~L~Ls~N~l~~ 280 (1088)
|++|+++.++. .|..+++|++|+|++|.++.+|.. +..+++|++|+|++|.++.+++ .|..+++|+.|+|++|.++.
T Consensus 116 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 195 (270)
T 2o6q_A 116 LDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR 195 (270)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCc
Confidence 66666664442 345666666666666666655543 4556666666666666665554 35566666666666666664
Q ss_pred Cc--cccCCCCCCeEEeeCCCCCCC
Q 001385 281 LP--EILPLLKLRHLSLANIRIVAD 303 (1088)
Q Consensus 281 l~--~l~~l~~L~~L~L~~N~l~~~ 303 (1088)
++ .+..+++|+.|+|++|++.+.
T Consensus 196 ~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 196 VPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp CCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred CCHHHhccccCCCEEEecCCCeeCC
Confidence 43 244556666666666665543
No 68
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.80 E-value=1.4e-19 Score=203.73 Aligned_cols=200 Identities=18% Similarity=0.064 Sum_probs=163.6
Q ss_pred CCCCccEEEeeCCCCCCCCcccc--ccCccccEEeCcCCCCCCCCcc----ccccCCCCccEEEccCCCCCCcc-ccccC
Q 001385 123 RREPLRAVVLTKGVGSGHLSDGI--GVLTRLMRSDLSTSGPGNNMGS----GFCDHWKTVTAVSLCGLGLSALP-VDLTR 195 (1088)
Q Consensus 123 ~l~~L~~L~Ls~n~i~~~~p~~l--~~l~~L~~L~Ls~N~l~~~~~~----~~~~~l~~L~~L~Ls~n~l~~lp-~~l~~ 195 (1088)
.+++|++|+|++|.+.+..|..+ ..+++|++|+|++|. +....+ ..+..+++|++|+|++|.++.++ ..+..
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 167 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVS-WATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRA 167 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCC-CSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCC
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeeccc-ccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhcc
Confidence 34679999999999998888887 899999999999998 444333 34457899999999999999766 57889
Q ss_pred CCCCcEEEccCCCCCC---Cch--hhcCCCCCcEEEccCCcCcccchh----ccCCCCCCEEEeccCCCCCC-cccccCC
Q 001385 196 LPVLEKLYLDNNKLST---LPP--ELGAMKNLKVLIVDNNMLVCVPVE----LRECVGLVELSLEHNRLVRP-LLDFRAM 265 (1088)
Q Consensus 196 l~~L~~L~L~~N~l~~---lp~--~l~~l~~L~~L~Ls~N~l~~lp~~----l~~l~~L~~L~Ls~N~l~~~-~~~l~~l 265 (1088)
+++|++|+|++|++.. ++. .+..+++|++|+|++|.++.++.. +.++++|++|+|++|.+++. ++.+..+
T Consensus 168 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~ 247 (310)
T 4glp_A 168 FPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRC 247 (310)
T ss_dssp CTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSC
T ss_pred CCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhc
Confidence 9999999999999863 332 346899999999999999876653 57889999999999999987 4456555
Q ss_pred ---ccccEEEecCCCCCCCccccCCCCCCeEEeeCCCCCCCccccchhhhhcCcCCccccccccchhh
Q 001385 266 ---AELKILRLFGNPLEFLPEILPLLKLRHLSLANIRIVADENLRSVNVQIEMENNSYFGASRHKLSA 330 (1088)
Q Consensus 266 ---~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~~~~l~~l~~l~l~~n~l~~ 330 (1088)
++|++|+|++|.|+.+|... .++|++|+|++|+|++.+.+. .+++|+.+++++|.++.
T Consensus 248 ~~~~~L~~L~Ls~N~l~~lp~~~-~~~L~~L~Ls~N~l~~~~~~~------~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 248 MWSSALNSLNLSFAGLEQVPKGL-PAKLRVLDLSSNRLNRAPQPD------ELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCCTTCCCEECCSSCCCSCCSCC-CSCCSCEECCSCCCCSCCCTT------SCCCCSCEECSSTTTSC
T ss_pred cCcCcCCEEECCCCCCCchhhhh-cCCCCEEECCCCcCCCCchhh------hCCCccEEECcCCCCCC
Confidence 69999999999999776422 279999999999999865443 37899999999998753
No 69
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.80 E-value=1.4e-18 Score=191.28 Aligned_cols=198 Identities=23% Similarity=0.260 Sum_probs=170.2
Q ss_pred CCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCcccc-ccCCCCCcEEE
Q 001385 125 EPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVD-LTRLPVLEKLY 203 (1088)
Q Consensus 125 ~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~ 203 (1088)
.+++.++++++.++. +|..+. ++|+.|+|++|. +....+..|..+++|++|+|++|.|+.+|.. +..+++|++|+
T Consensus 16 ~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNK-LSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLW 91 (270)
T ss_dssp TTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSC-CSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEE
T ss_pred CCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCC-CCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEE
Confidence 357899999999876 676554 689999999999 6777777899999999999999999999876 47899999999
Q ss_pred ccCCCCCCCch-hhcCCCCCcEEEccCCcCcccch-hccCCCCCCEEEeccCCCCCCcc-cccCCccccEEEecCCCCCC
Q 001385 204 LDNNKLSTLPP-ELGAMKNLKVLIVDNNMLVCVPV-ELRECVGLVELSLEHNRLVRPLL-DFRAMAELKILRLFGNPLEF 280 (1088)
Q Consensus 204 L~~N~l~~lp~-~l~~l~~L~~L~Ls~N~l~~lp~-~l~~l~~L~~L~Ls~N~l~~~~~-~l~~l~~L~~L~Ls~N~l~~ 280 (1088)
|++|+++.+|. .+..+++|++|+|++|.++.++. .+.++++|++|+|++|.++.+++ .|..+++|+.|+|++|.++.
T Consensus 92 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 171 (270)
T 2o6q_A 92 VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR 171 (270)
T ss_dssp CCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcE
Confidence 99999998774 56899999999999999997765 57899999999999999998876 48999999999999999996
Q ss_pred Cc--cccCCCCCCeEEeeCCCCCCCccccchhhhhcCcCCccccccccchhh
Q 001385 281 LP--EILPLLKLRHLSLANIRIVADENLRSVNVQIEMENNSYFGASRHKLSA 330 (1088)
Q Consensus 281 l~--~l~~l~~L~~L~L~~N~l~~~~~l~~l~~~~~l~~l~~l~l~~n~l~~ 330 (1088)
++ .+..+++|++|+|++|.++..+.-. +..+++|+.+++++|.+..
T Consensus 172 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 172 VPEGAFDKLTELKTLKLDNNQLKRVPEGA----FDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTT----TTTCTTCCEEECCSSCBCC
T ss_pred eChhHhccCCCcCEEECCCCcCCcCCHHH----hccccCCCEEEecCCCeeC
Confidence 65 3788999999999999998754311 2247889999999998754
No 70
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.80 E-value=1.1e-18 Score=196.07 Aligned_cols=176 Identities=19% Similarity=0.252 Sum_probs=159.8
Q ss_pred hhcCCCCCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCccccccCCCC
Q 001385 119 RVVKRREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPV 198 (1088)
Q Consensus 119 ~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~ 198 (1088)
..+..+++|++|+|++|.+.+. +. +..+++|++|+|++|. +... ..+..+++|++|+|++|.++.++. +..+++
T Consensus 57 ~~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~-l~~~--~~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~ 130 (308)
T 1h6u_A 57 EGVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNP-LKNV--SAIAGLQSIKTLDLTSTQITDVTP-LAGLSN 130 (308)
T ss_dssp TTGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCC-CSCC--GGGTTCTTCCEEECTTSCCCCCGG-GTTCTT
T ss_pred hhhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCc-CCCc--hhhcCCCCCCEEECCCCCCCCchh-hcCCCC
Confidence 3577899999999999999874 44 9999999999999998 4443 368899999999999999999875 899999
Q ss_pred CcEEEccCCCCCCCchhhcCCCCCcEEEccCCcCcccchhccCCCCCCEEEeccCCCCCCcccccCCccccEEEecCCCC
Q 001385 199 LEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVELRECVGLVELSLEHNRLVRPLLDFRAMAELKILRLFGNPL 278 (1088)
Q Consensus 199 L~~L~L~~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~~~~~l~~l~~L~~L~Ls~N~l 278 (1088)
|++|+|++|.++.++. +..+++|++|++++|.++.++. +.++++|+.|++++|.+++.++ +..+++|+.|+|++|.+
T Consensus 131 L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l 207 (308)
T 1h6u_A 131 LQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQI 207 (308)
T ss_dssp CCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCC
T ss_pred CCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCcc
Confidence 9999999999998875 8999999999999999998876 9999999999999999998764 88999999999999999
Q ss_pred CCCccccCCCCCCeEEeeCCCCCCC
Q 001385 279 EFLPEILPLLKLRHLSLANIRIVAD 303 (1088)
Q Consensus 279 ~~l~~l~~l~~L~~L~L~~N~l~~~ 303 (1088)
+.++.+..+++|+.|+|++|+++..
T Consensus 208 ~~~~~l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 208 SDVSPLANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp CBCGGGTTCTTCCEEEEEEEEEECC
T ss_pred CccccccCCCCCCEEEccCCeeecC
Confidence 9777899999999999999999874
No 71
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.80 E-value=5.1e-19 Score=226.32 Aligned_cols=159 Identities=20% Similarity=0.232 Sum_probs=113.8
Q ss_pred CCCCCCceEEeccCCCCCcccccccccccchhhcCCCCCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCcc
Q 001385 88 LPVPEDTVVVELAPQEEGDVATDAANVGVEMRVVKRREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGS 167 (1088)
Q Consensus 88 lp~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~ 167 (1088)
+........++++.... ...+....|.++++|++|+|++|.+.+..|..|.++++|++|+|++|. +.+..+
T Consensus 44 ~~~l~~L~~LdLs~n~~--------~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~~ 114 (844)
T 3j0a_A 44 FPFLEQLQLLELGSQYT--------PLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCG-LSDAVL 114 (844)
T ss_dssp CSSCCSCSEEEECTTCC--------CCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCC-CSSCCS
T ss_pred CcccccCeEEeCCCCCC--------ccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCC-CCcccc
Confidence 33444455666654421 122445778999999999999999998889999999999999999998 554344
Q ss_pred c--cccCCCCccEEEccCCCCCCcc--ccccCCCCCcEEEccCCCCC-CCchhhcCC--CCCcEEEccCCcCc-ccchhc
Q 001385 168 G--FCDHWKTVTAVSLCGLGLSALP--VDLTRLPVLEKLYLDNNKLS-TLPPELGAM--KNLKVLIVDNNMLV-CVPVEL 239 (1088)
Q Consensus 168 ~--~~~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~L~~N~l~-~lp~~l~~l--~~L~~L~Ls~N~l~-~lp~~l 239 (1088)
. .+.++++|++|+|++|.++.++ ..+.++++|++|+|++|.++ ..+..+..+ ++|+.|++++|.+. ..|..+
T Consensus 115 ~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~ 194 (844)
T 3j0a_A 115 KDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDW 194 (844)
T ss_dssp TTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCC
T ss_pred cCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccch
Confidence 3 4889999999999999998653 56899999999999999998 345555554 56666666666655 333333
Q ss_pred cCCCC------CCEEEeccCCC
Q 001385 240 RECVG------LVELSLEHNRL 255 (1088)
Q Consensus 240 ~~l~~------L~~L~Ls~N~l 255 (1088)
..+.+ |+.|++++|.+
T Consensus 195 ~~~~~~~~~~~L~~L~Ls~n~l 216 (844)
T 3j0a_A 195 GKCMNPFRNMVLEILDVSGNGW 216 (844)
T ss_dssp CSSSCTTTTCCBSEEBCSSCCS
T ss_pred hhcCCccccCceeEEecCCCcC
Confidence 33333 55555555544
No 72
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.79 E-value=8.7e-19 Score=216.70 Aligned_cols=132 Identities=15% Similarity=0.116 Sum_probs=104.8
Q ss_pred CCceEEeccCCCCCcccccccccccchhhcCCCCCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCcccccc
Q 001385 92 EDTVVVELAPQEEGDVATDAANVGVEMRVVKRREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCD 171 (1088)
Q Consensus 92 ~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~ 171 (1088)
.....++++.+.. ..+....|.++++|++|+|++|.|++..+.+|.++++|++|+|++|+ +....+..|.
T Consensus 52 ~~~~~LdLs~N~i---------~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f~ 121 (635)
T 4g8a_A 52 FSTKNLDLSFNPL---------RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFS 121 (635)
T ss_dssp TTCCEEECTTSCC---------CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECGGGGT
T ss_pred cCCCEEEeeCCCC---------CCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc-CCCCCHHHhc
Confidence 4456777765543 22444678888999999999998888767788889999999999998 6666667788
Q ss_pred CCCCccEEEccCCCCCCccc-cccCCCCCcEEEccCCCCC--CCchhhcCCCCCcEEEccCCcCc
Q 001385 172 HWKTVTAVSLCGLGLSALPV-DLTRLPVLEKLYLDNNKLS--TLPPELGAMKNLKVLIVDNNMLV 233 (1088)
Q Consensus 172 ~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~N~l~--~lp~~l~~l~~L~~L~Ls~N~l~ 233 (1088)
++++|++|+|++|+|+.+|. .++++++|++|+|++|.++ .+|..+..+++|++|++++|+++
T Consensus 122 ~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 186 (635)
T 4g8a_A 122 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 186 (635)
T ss_dssp TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred CCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccc
Confidence 89999999999999888875 4788889999999999887 45677788888888888888764
No 73
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.79 E-value=8.9e-19 Score=211.78 Aligned_cols=126 Identities=16% Similarity=0.103 Sum_probs=114.8
Q ss_pred CCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCccccccCCCCCcEEEc
Q 001385 125 EPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPVLEKLYL 204 (1088)
Q Consensus 125 ~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 204 (1088)
++|++|+|++|.+++..|..|.++++|++|+|++|+ +....|..|.++++|++|+|++|+|+.+|.. .+++|++|+|
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNR-IQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSC-CCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCc-cCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEec
Confidence 899999999999999888899999999999999999 6777788999999999999999999999977 8999999999
Q ss_pred cCCCCCC--CchhhcCCCCCcEEEccCCcCcccchhccCCCCC--CEEEeccCCC
Q 001385 205 DNNKLST--LPPELGAMKNLKVLIVDNNMLVCVPVELRECVGL--VELSLEHNRL 255 (1088)
Q Consensus 205 ~~N~l~~--lp~~l~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L--~~L~Ls~N~l 255 (1088)
++|.++. +|..++++++|++|++++|.++. ..+..+++| +.|++++|.+
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTT
T ss_pred cCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccc
Confidence 9999995 67899999999999999999985 356667777 8888888887
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.79 E-value=8.2e-19 Score=193.80 Aligned_cols=201 Identities=17% Similarity=0.127 Sum_probs=169.9
Q ss_pred CceEEeccCCCCCcccccccccccchhhcCCCCCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccC
Q 001385 93 DTVVVELAPQEEGDVATDAANVGVEMRVVKRREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDH 172 (1088)
Q Consensus 93 ~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 172 (1088)
....++++..... .+....+..+++|++|+|++|.+++..+..|.++++|++|+|++|. +....+..+..
T Consensus 29 ~l~~L~ls~n~l~---------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~ 98 (276)
T 2z62_A 29 STKNLDLSFNPLR---------HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSG 98 (276)
T ss_dssp TCCEEECTTCCCC---------EECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTT
T ss_pred CccEEECCCCccc---------ccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc-cCccChhhhcC
Confidence 3456676554431 2333478899999999999999988777789999999999999999 66777788999
Q ss_pred CCCccEEEccCCCCCCccc-cccCCCCCcEEEccCCCCCC--CchhhcCCCCCcEEEccCCcCcccc-hhccCCCCCC--
Q 001385 173 WKTVTAVSLCGLGLSALPV-DLTRLPVLEKLYLDNNKLST--LPPELGAMKNLKVLIVDNNMLVCVP-VELRECVGLV-- 246 (1088)
Q Consensus 173 l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~N~l~~--lp~~l~~l~~L~~L~Ls~N~l~~lp-~~l~~l~~L~-- 246 (1088)
+++|++|++++|.++.++. .+..+++|++|+|++|.++. +|..+..+++|++|+|++|+++.++ ..+..+.+|+
T Consensus 99 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l 178 (276)
T 2z62_A 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178 (276)
T ss_dssp CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTC
T ss_pred CccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcccc
Confidence 9999999999999998776 68899999999999999985 7889999999999999999999665 4555555555
Q ss_pred --EEEeccCCCCCCcccccCCccccEEEecCCCCCCCcc--ccCCCCCCeEEeeCCCCCCC
Q 001385 247 --ELSLEHNRLVRPLLDFRAMAELKILRLFGNPLEFLPE--ILPLLKLRHLSLANIRIVAD 303 (1088)
Q Consensus 247 --~L~Ls~N~l~~~~~~l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~L~~N~l~~~ 303 (1088)
.|++++|.++++++......+|+.|+|++|.++.++. +..+++|+.|+|++|++.+.
T Consensus 179 ~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 179 NLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp CEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred ceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence 8999999999887765556699999999999996663 67899999999999999975
No 75
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.79 E-value=1.9e-18 Score=188.24 Aligned_cols=182 Identities=23% Similarity=0.256 Sum_probs=155.6
Q ss_pred CCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCccc-cccCCCCCcEEE
Q 001385 125 EPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPV-DLTRLPVLEKLY 203 (1088)
Q Consensus 125 ~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~ 203 (1088)
...+.++++++.++. +|..+. ++|+.|+|++|. +....+..|.++++|++|+|++|.|+.++. .+..+++|++|+
T Consensus 14 ~~~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 89 (251)
T 3m19_A 14 EGKKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTG-LATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLG 89 (251)
T ss_dssp GGGTEEECTTCCCSS-CCSCCC--TTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCeEEecCCCCccc-cCCCCC--CCCCEEEccCCC-cCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEE
Confidence 356789999998875 665554 689999999999 677777889999999999999999997765 478999999999
Q ss_pred ccCCCCCCCc-hhhcCCCCCcEEEccCCcCcccchh-ccCCCCCCEEEeccCCCCCCcc-cccCCccccEEEecCCCCCC
Q 001385 204 LDNNKLSTLP-PELGAMKNLKVLIVDNNMLVCVPVE-LRECVGLVELSLEHNRLVRPLL-DFRAMAELKILRLFGNPLEF 280 (1088)
Q Consensus 204 L~~N~l~~lp-~~l~~l~~L~~L~Ls~N~l~~lp~~-l~~l~~L~~L~Ls~N~l~~~~~-~l~~l~~L~~L~Ls~N~l~~ 280 (1088)
|++|+++.++ ..+..+++|++|+|++|.|+.+|.. +.++++|++|+|++|+++++++ .|..+++|+.|+|++|.++.
T Consensus 90 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 169 (251)
T 3m19_A 90 LANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS 169 (251)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence 9999999777 4568999999999999999988765 5889999999999999998886 58999999999999999996
Q ss_pred Cc--cccCCCCCCeEEeeCCCCCCC-ccccchh
Q 001385 281 LP--EILPLLKLRHLSLANIRIVAD-ENLRSVN 310 (1088)
Q Consensus 281 l~--~l~~l~~L~~L~L~~N~l~~~-~~l~~l~ 310 (1088)
++ .+..+++|+.|+|++|++.+. ..+..+.
T Consensus 170 ~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~ 202 (251)
T 3m19_A 170 VPHGAFDRLGKLQTITLFGNQFDCSRCEILYLS 202 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSCCBCTTSTTHHHHH
T ss_pred cCHHHHhCCCCCCEEEeeCCceeCCccccHHHH
Confidence 55 577899999999999999875 5555443
No 76
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.78 E-value=4e-19 Score=191.91 Aligned_cols=194 Identities=17% Similarity=0.129 Sum_probs=161.9
Q ss_pred CCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccC-CCCCCccc-cccCCCCCcEE
Q 001385 125 EPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCG-LGLSALPV-DLTRLPVLEKL 202 (1088)
Q Consensus 125 ~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~-n~l~~lp~-~l~~l~~L~~L 202 (1088)
++|+.|+|++|++++..+..|.++++|++|+|++|+.+....+..|..+++|++|+|++ |.++.++. .+..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 48999999999998876678999999999999999634555666888999999999998 99998874 67899999999
Q ss_pred EccCCCCCCCchhhcCCCCCc---EEEccCC-cCcccch-hccCCCCCC-EEEeccCCCCCCcccccCCccccEEEecCC
Q 001385 203 YLDNNKLSTLPPELGAMKNLK---VLIVDNN-MLVCVPV-ELRECVGLV-ELSLEHNRLVRPLLDFRAMAELKILRLFGN 276 (1088)
Q Consensus 203 ~L~~N~l~~lp~~l~~l~~L~---~L~Ls~N-~l~~lp~-~l~~l~~L~-~L~Ls~N~l~~~~~~l~~l~~L~~L~Ls~N 276 (1088)
++++|+++.+|. +..+++|+ +|++++| .++.+|. .+.++++|+ .|++++|.++.++......++|+.|+|++|
T Consensus 111 ~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n 189 (239)
T 2xwt_C 111 GIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKN 189 (239)
T ss_dssp EEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTC
T ss_pred eCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCC
Confidence 999999999986 88888888 9999999 9998876 478999999 999999999876654333489999999999
Q ss_pred C-CCCCc--cccCC-CCCCeEEeeCCCCCCCccccchhhhhcCcCCcccccccc
Q 001385 277 P-LEFLP--EILPL-LKLRHLSLANIRIVADENLRSVNVQIEMENNSYFGASRH 326 (1088)
Q Consensus 277 ~-l~~l~--~l~~l-~~L~~L~L~~N~l~~~~~l~~l~~~~~l~~l~~l~l~~n 326 (1088)
+ ++.++ .+..+ ++|+.|++++|+++..+.- .+.+++.|++.++
T Consensus 190 ~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~-------~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 190 KYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK-------GLEHLKELIARNT 236 (239)
T ss_dssp TTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT-------TCTTCSEEECTTC
T ss_pred CCcccCCHHHhhccccCCcEEECCCCccccCChh-------HhccCceeeccCc
Confidence 5 98554 47788 9999999999999875433 2667777776654
No 77
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.78 E-value=3.2e-18 Score=208.97 Aligned_cols=126 Identities=17% Similarity=0.124 Sum_probs=113.3
Q ss_pred CCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCccccccCCCCCcEEEc
Q 001385 125 EPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPVLEKLYL 204 (1088)
Q Consensus 125 ~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 204 (1088)
++|++|+|++|.+++..+..|.++++|++|+|++|+ +....+..|..+++|++|+|++|.|+.+|.. .+++|++|+|
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNR-IRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCC-CCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEEC
Confidence 799999999999999888899999999999999999 7777788999999999999999999999977 8999999999
Q ss_pred cCCCCCCC--chhhcCCCCCcEEEccCCcCcccchhccCCCCC--CEEEeccCCC
Q 001385 205 DNNKLSTL--PPELGAMKNLKVLIVDNNMLVCVPVELRECVGL--VELSLEHNRL 255 (1088)
Q Consensus 205 ~~N~l~~l--p~~l~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L--~~L~Ls~N~l 255 (1088)
++|+++.+ |..|.++++|++|++++|.++.. .+..+++| +.|++++|.+
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSC
T ss_pred CCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeecccc
Confidence 99999965 47899999999999999999852 45555566 9999999988
No 78
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=1.9e-18 Score=192.54 Aligned_cols=174 Identities=20% Similarity=0.209 Sum_probs=155.9
Q ss_pred cCCCCCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCccccccCCCCCc
Q 001385 121 VKRREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPVLE 200 (1088)
Q Consensus 121 ~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~ 200 (1088)
+..+++|+.|++++|.+... + .+..+++|+.|+|++|+ +....+ +..+++|++|+|++|.++.++. +..+++|+
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~-l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~ 115 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNK-LTDIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLK 115 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCC
T ss_pred hhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCc-cCCCcc--cccCCCCCEEECCCCcCCCChh-hccCCCCC
Confidence 34678899999999998764 4 48899999999999998 555444 8899999999999999998874 89999999
Q ss_pred EEEccCCCCCCCchhhcCCCCCcEEEccCCcCcccchhccCCCCCCEEEeccCCCCCCcccccCCccccEEEecCCCCCC
Q 001385 201 KLYLDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVELRECVGLVELSLEHNRLVRPLLDFRAMAELKILRLFGNPLEF 280 (1088)
Q Consensus 201 ~L~L~~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~~~~~l~~l~~L~~L~Ls~N~l~~ 280 (1088)
+|+|++|+++.++ .+..+++|+.|++++|.++.+ ..+..+++|+.|+|++|.+++..+ +..+++|+.|+|++|.++.
T Consensus 116 ~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~ 192 (291)
T 1h6t_A 116 SLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISD 192 (291)
T ss_dssp EEECTTSCCCCCG-GGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCB
T ss_pred EEECCCCcCCCCh-hhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCC
Confidence 9999999999885 688999999999999999988 578999999999999999998876 8999999999999999998
Q ss_pred CccccCCCCCCeEEeeCCCCCCC
Q 001385 281 LPEILPLLKLRHLSLANIRIVAD 303 (1088)
Q Consensus 281 l~~l~~l~~L~~L~L~~N~l~~~ 303 (1088)
++.+..+++|+.|++++|+++..
T Consensus 193 l~~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 193 LRALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp CGGGTTCTTCSEEEEEEEEEECC
T ss_pred ChhhccCCCCCEEECcCCcccCC
Confidence 88899999999999999998764
No 79
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.77 E-value=2.3e-19 Score=212.71 Aligned_cols=227 Identities=19% Similarity=0.113 Sum_probs=128.4
Q ss_pred hhcCCCCCccEEEeeCCCCCCCCccccccCccc-------------cEEeCcCCCCCCCCccccccCCCCccEEEccCCC
Q 001385 119 RVVKRREPLRAVVLTKGVGSGHLSDGIGVLTRL-------------MRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLG 185 (1088)
Q Consensus 119 ~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L-------------~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~ 185 (1088)
..+.++++|++|++++|.+.+.+|..++++.+| +.|++++|. +.+ +|.. .++|++|+|++|.
T Consensus 28 ~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~-l~~-lp~~---~~~L~~L~l~~n~ 102 (454)
T 1jl5_A 28 VEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG-LSS-LPEL---PPHLESLVASCNS 102 (454)
T ss_dssp ------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC-CSC-CCSC---CTTCSEEECCSSC
T ss_pred hhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc-ccc-CCCC---cCCCCEEEccCCc
Confidence 345666666666666666666666666665553 666666665 222 2221 2566666666666
Q ss_pred CCCccccccCCCCCcEEEccCCCCCCCchhhcCCCCCcEEEccCCcCcccchhccCCCCCCEEEeccCCCCCCcccccCC
Q 001385 186 LSALPVDLTRLPVLEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVELRECVGLVELSLEHNRLVRPLLDFRAM 265 (1088)
Q Consensus 186 l~~lp~~l~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~~~~~l~~l 265 (1088)
++.+|.. +.+|++|++++|+++.+|.. .++|++|++++|.++.+| .++++++|++|++++|++++++.. .
T Consensus 103 l~~lp~~---~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~---~ 172 (454)
T 1jl5_A 103 LTELPEL---PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDL---P 172 (454)
T ss_dssp CSSCCCC---CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSCCCCC---C
T ss_pred CCccccc---cCCCcEEECCCCccCcccCC---CCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcccCCC---c
Confidence 6666542 25666666666666655431 146666677666666666 466666677777766666654432 2
Q ss_pred ccccEEEecCCCCCCCccccCCCCCCeEEeeCCCCCCCccccchhhhhcCcCCccccccccchhhhHHhhhcccCCCCcc
Q 001385 266 AELKILRLFGNPLEFLPEILPLLKLRHLSLANIRIVADENLRSVNVQIEMENNSYFGASRHKLSAFFSLIFRFSSCHHPL 345 (1088)
Q Consensus 266 ~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~~~~l~~l~~l~l~~n~l~~~~~~l~~l~~l~~l~ 345 (1088)
.+|++|++++|.++.+|.+..+++|++|++++|.+++.+.. ..+|+.+++++|.+..++ .+..+.+++.
T Consensus 173 ~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~--------~~~L~~L~l~~n~l~~lp-~~~~l~~L~~-- 241 (454)
T 1jl5_A 173 PSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDL--------PLSLESIVAGNNILEELP-ELQNLPFLTT-- 241 (454)
T ss_dssp TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCC--------CTTCCEEECCSSCCSSCC-CCTTCTTCCE--
T ss_pred ccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCcCCCC--------cCcccEEECcCCcCCccc-ccCCCCCCCE--
Confidence 36666667666666666666666677777776666654322 235666666666666444 2344444433
Q ss_pred hhHHHhhhhcCCCCcc-ccccccccccccceeeccCCh
Q 001385 346 LASALAKIMQDQENRV-VVGKDENAVRQLISMISSDNR 382 (1088)
Q Consensus 346 l~~~L~~i~~l~~N~l-~ip~~~~~Lp~L~~L~Ls~N~ 382 (1088)
+++.+|.+ .+|. .+++|+.|++++|.
T Consensus 242 --------L~l~~N~l~~l~~---~~~~L~~L~l~~N~ 268 (454)
T 1jl5_A 242 --------IYADNNLLKTLPD---LPPSLEALNVRDNY 268 (454)
T ss_dssp --------EECCSSCCSSCCS---CCTTCCEEECCSSC
T ss_pred --------EECCCCcCCcccc---cccccCEEECCCCc
Confidence 23445544 3332 23566666666665
No 80
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.76 E-value=1.7e-18 Score=194.84 Aligned_cols=179 Identities=17% Similarity=0.125 Sum_probs=155.6
Q ss_pred CCCCCccEEEeeCCCCCCCCc----cccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCC---ccc--c
Q 001385 122 KRREPLRAVVLTKGVGSGHLS----DGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSA---LPV--D 192 (1088)
Q Consensus 122 ~~l~~L~~L~Ls~n~i~~~~p----~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~---lp~--~ 192 (1088)
..+++|++|+|++|.+++..+ ..+..+++|++|+|++|. +....+..+..+++|++|+|++|++.. ++. .
T Consensus 114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 192 (310)
T 4glp_A 114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAH-SPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALC 192 (310)
T ss_dssp CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCS-SCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSC
T ss_pred ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCC-cchhhHHHhccCCCCCEEECCCCCCccchhhhHHHh
Confidence 789999999999999987655 345679999999999999 677788899999999999999999863 432 3
Q ss_pred ccCCCCCcEEEccCCCCCCCchh----hcCCCCCcEEEccCCcCccc-chhccCC---CCCCEEEeccCCCCCCcccccC
Q 001385 193 LTRLPVLEKLYLDNNKLSTLPPE----LGAMKNLKVLIVDNNMLVCV-PVELREC---VGLVELSLEHNRLVRPLLDFRA 264 (1088)
Q Consensus 193 l~~l~~L~~L~L~~N~l~~lp~~----l~~l~~L~~L~Ls~N~l~~l-p~~l~~l---~~L~~L~Ls~N~l~~~~~~l~~ 264 (1088)
+..+++|++|+|++|+++.++.. +..+++|++|+|++|.++.+ |..+..+ ++|++|+|++|+++.++..+.
T Consensus 193 ~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~- 271 (310)
T 4glp_A 193 PHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP- 271 (310)
T ss_dssp TTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC-
T ss_pred hhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc-
Confidence 46899999999999999877653 57889999999999999965 7777776 699999999999998776664
Q ss_pred CccccEEEecCCCCCCCccccCCCCCCeEEeeCCCCCCC
Q 001385 265 MAELKILRLFGNPLEFLPEILPLLKLRHLSLANIRIVAD 303 (1088)
Q Consensus 265 l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~L~~N~l~~~ 303 (1088)
++|+.|+|++|+|+.+|.+..+++|+.|+|++|+++..
T Consensus 272 -~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~~N~l~~~ 309 (310)
T 4glp_A 272 -AKLRVLDLSSNRLNRAPQPDELPEVDNLTLDGNPFLVP 309 (310)
T ss_dssp -SCCSCEECCSCCCCSCCCTTSCCCCSCEECSSTTTSCC
T ss_pred -CCCCEEECCCCcCCCCchhhhCCCccEEECcCCCCCCC
Confidence 79999999999999888888999999999999999764
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.76 E-value=2.2e-18 Score=190.02 Aligned_cols=196 Identities=23% Similarity=0.204 Sum_probs=163.6
Q ss_pred CccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCccccccCCCCCcEEEcc
Q 001385 126 PLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPVLEKLYLD 205 (1088)
Q Consensus 126 ~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 205 (1088)
++..+++.++.+... ..+..+++|+.|++++|. +.. . ..+..+++|++|+|++|.++.++ .+..+++|++|+|+
T Consensus 20 ~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~-i~~-~-~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~ 93 (272)
T 3rfs_A 20 ETIKANLKKKSVTDA--VTQNELNSIDQIIANNSD-IKS-V-QGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILT 93 (272)
T ss_dssp HHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSC-CCC-C-TTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECT
T ss_pred HHHHHHhcCcccccc--cccccccceeeeeeCCCC-ccc-c-cccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECC
Confidence 445566777766554 346788999999999998 333 2 34778999999999999999875 78999999999999
Q ss_pred CCCCCCCchh-hcCCCCCcEEEccCCcCcccchh-ccCCCCCCEEEeccCCCCCCcc-cccCCccccEEEecCCCCCCCc
Q 001385 206 NNKLSTLPPE-LGAMKNLKVLIVDNNMLVCVPVE-LRECVGLVELSLEHNRLVRPLL-DFRAMAELKILRLFGNPLEFLP 282 (1088)
Q Consensus 206 ~N~l~~lp~~-l~~l~~L~~L~Ls~N~l~~lp~~-l~~l~~L~~L~Ls~N~l~~~~~-~l~~l~~L~~L~Ls~N~l~~l~ 282 (1088)
+|.++.++.. +..+++|++|+|++|.++.++.. +.++++|++|+|++|.+++.++ .|..+++|+.|+|++|.++.++
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 173 (272)
T 3rfs_A 94 GNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP 173 (272)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccC
Confidence 9999977754 68999999999999999977764 7899999999999999998876 4789999999999999999665
Q ss_pred c--ccCCCCCCeEEeeCCCCCCCccccchhhhhcCcCCccccccccchhhh
Q 001385 283 E--ILPLLKLRHLSLANIRIVADENLRSVNVQIEMENNSYFGASRHKLSAF 331 (1088)
Q Consensus 283 ~--l~~l~~L~~L~L~~N~l~~~~~l~~l~~~~~l~~l~~l~l~~n~l~~~ 331 (1088)
. +..+++|++|+|++|.+++.+.- .+..+++|+.+++++|.+.+.
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~l~~N~~~~~ 220 (272)
T 3rfs_A 174 EGVFDKLTQLKDLRLYQNQLKSVPDG----VFDRLTSLQYIWLHDNPWDCT 220 (272)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTT----TTTTCTTCCEEECCSSCBCCC
T ss_pred HHHhcCCccCCEEECCCCcCCccCHH----HHhCCcCCCEEEccCCCcccc
Confidence 3 78899999999999999985331 122488999999999988754
No 82
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.76 E-value=1.5e-18 Score=205.71 Aligned_cols=215 Identities=22% Similarity=0.164 Sum_probs=159.4
Q ss_pred ccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCccccccCCCCCcEEEccC
Q 001385 127 LRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPVLEKLYLDN 206 (1088)
Q Consensus 127 L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~ 206 (1088)
++.|++++|.+++ +|.. .++|++|++++|. +.+ +|.. +.+|++|++++|.++.+|.. .++|++|++++
T Consensus 73 l~~L~l~~~~l~~-lp~~---~~~L~~L~l~~n~-l~~-lp~~---~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~ 140 (454)
T 1jl5_A 73 AHELELNNLGLSS-LPEL---PPHLESLVASCNS-LTE-LPEL---PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSN 140 (454)
T ss_dssp CSEEECTTSCCSC-CCSC---CTTCSEEECCSSC-CSS-CCCC---CTTCCEEECCSSCCSCCCSC---CTTCCEEECCS
T ss_pred CCEEEecCCcccc-CCCC---cCCCCEEEccCCc-CCc-cccc---cCCCcEEECCCCccCcccCC---CCCCCEEECcC
Confidence 5888998888876 4442 3688889998888 444 4433 47888999999888877642 26888999999
Q ss_pred CCCCCCchhhcCCCCCcEEEccCCcCcccchhccCCCCCCEEEeccCCCCCCcccccCCccccEEEecCCCCCCCccccC
Q 001385 207 NKLSTLPPELGAMKNLKVLIVDNNMLVCVPVELRECVGLVELSLEHNRLVRPLLDFRAMAELKILRLFGNPLEFLPEILP 286 (1088)
Q Consensus 207 N~l~~lp~~l~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~~~~~l~~l~~L~~L~Ls~N~l~~l~~l~~ 286 (1088)
|+++.+| .+..+++|++|++++|+++.+|..+ .+|++|++++|.+++++ .+..+++|+.|++++|.++.+|.+.
T Consensus 141 n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~~- 214 (454)
T 1jl5_A 141 NQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDLP- 214 (454)
T ss_dssp SCCSSCC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCCC-
T ss_pred CCCCCCc-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCCc-
Confidence 9888888 5888889999999999888877543 48888999999888864 6888888999999998888766543
Q ss_pred CCCCCeEEeeCCCCCCCccccchhhhhcCcCCccccccccchhhhHHhhhcccCCCCcchhHHHhhhhcCCCCcc-cccc
Q 001385 287 LLKLRHLSLANIRIVADENLRSVNVQIEMENNSYFGASRHKLSAFFSLIFRFSSCHHPLLASALAKIMQDQENRV-VVGK 365 (1088)
Q Consensus 287 l~~L~~L~L~~N~l~~~~~l~~l~~~~~l~~l~~l~l~~n~l~~~~~~l~~l~~l~~l~l~~~L~~i~~l~~N~l-~ip~ 365 (1088)
.+|++|++++|.++.++.+. .+++|+.+++++|.+.+++... .+++. +++.+|.+ .+|.
T Consensus 215 -~~L~~L~l~~n~l~~lp~~~------~l~~L~~L~l~~N~l~~l~~~~---~~L~~----------L~l~~N~l~~l~~ 274 (454)
T 1jl5_A 215 -LSLESIVAGNNILEELPELQ------NLPFLTTIYADNNLLKTLPDLP---PSLEA----------LNVRDNYLTDLPE 274 (454)
T ss_dssp -TTCCEEECCSSCCSSCCCCT------TCTTCCEEECCSSCCSSCCSCC---TTCCE----------EECCSSCCSCCCC
T ss_pred -CcccEEECcCCcCCcccccC------CCCCCCEEECCCCcCCcccccc---cccCE----------EECCCCcccccCc
Confidence 58889999998888765444 3788888888888887755322 22222 34556655 4443
Q ss_pred ccccccccceeeccCCh
Q 001385 366 DENAVRQLISMISSDNR 382 (1088)
Q Consensus 366 ~~~~Lp~L~~L~Ls~N~ 382 (1088)
. +++|+.|++++|.
T Consensus 275 ~---~~~L~~L~ls~N~ 288 (454)
T 1jl5_A 275 L---PQSLTFLDVSENI 288 (454)
T ss_dssp C---CTTCCEEECCSSC
T ss_pred c---cCcCCEEECcCCc
Confidence 2 4678888888876
No 83
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.75 E-value=6e-18 Score=209.16 Aligned_cols=132 Identities=21% Similarity=0.237 Sum_probs=120.2
Q ss_pred CCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCccc-cccCCCCCcEEE
Q 001385 125 EPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPV-DLTRLPVLEKLY 203 (1088)
Q Consensus 125 ~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~ 203 (1088)
+++++|+|++|.|+...+..|.++++|++|+|++|+ +....+..|.++++|++|+|++|+|+.+|. .|.++++|++|+
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~-i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCc-CCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence 479999999999998777899999999999999999 677778889999999999999999999886 578999999999
Q ss_pred ccCCCCCCCch-hhcCCCCCcEEEccCCcCc--ccchhccCCCCCCEEEeccCCCCC
Q 001385 204 LDNNKLSTLPP-ELGAMKNLKVLIVDNNMLV--CVPVELRECVGLVELSLEHNRLVR 257 (1088)
Q Consensus 204 L~~N~l~~lp~-~l~~l~~L~~L~Ls~N~l~--~lp~~l~~l~~L~~L~Ls~N~l~~ 257 (1088)
|++|+++.+|. .|+++++|++|+|++|.++ .+|..+..+++|++|+|++|++++
T Consensus 131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 187 (635)
T 4g8a_A 131 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187 (635)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred CCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccc
Confidence 99999998875 5899999999999999998 467888999999999999987754
No 84
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.75 E-value=1.5e-17 Score=203.38 Aligned_cols=220 Identities=21% Similarity=0.176 Sum_probs=160.0
Q ss_pred CCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCccccccCCCCCcEEEc
Q 001385 125 EPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPVLEKLYL 204 (1088)
Q Consensus 125 ~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 204 (1088)
.+++.|++++|.++ .+|..+. ++|++|+|++|. +.. +|. .+++|++|+|++|+|+.+|. .+++|++|+|
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~-l~~-lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNN-LTS-LPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCC-CSC-CCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCC-CCC-CCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEEC
Confidence 46899999999998 4776665 899999999998 443 444 57999999999999999997 7799999999
Q ss_pred cCCCCCCCchhhcCCCCCcEEEccCCcCcccchhccCCCCCCEEEeccCCCCCCcccccCCccccEEEecCCCCCCCccc
Q 001385 205 DNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVELRECVGLVELSLEHNRLVRPLLDFRAMAELKILRLFGNPLEFLPEI 284 (1088)
Q Consensus 205 ~~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~~~~~l~~l~~L~~L~Ls~N~l~~l~~l 284 (1088)
++|+++.+|. .+++|+.|++++|+++.+|.. +++|++|+|++|.+++++.. +.+|+.|++++|.|+.+|
T Consensus 109 s~N~l~~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~l~-- 177 (622)
T 3g06_A 109 FSNPLTHLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQLTSLP-- 177 (622)
T ss_dssp CSCCCCCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCC--
T ss_pred cCCcCCCCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCCc---cCCCCEEECCCCCCCCCc--
Confidence 9999999987 678999999999999999874 48999999999999887542 356677777777777665
Q ss_pred cCCCCCCeEEeeCCCCCCCcccc----chhh--------hhcCcCCccccccccchhhhHHhhhcccCCCCcchhHHHhh
Q 001385 285 LPLLKLRHLSLANIRIVADENLR----SVNV--------QIEMENNSYFGASRHKLSAFFSLIFRFSSCHHPLLASALAK 352 (1088)
Q Consensus 285 ~~l~~L~~L~L~~N~l~~~~~l~----~l~~--------~~~l~~l~~l~l~~n~l~~~~~~l~~l~~l~~l~l~~~L~~ 352 (1088)
..+++|+.|+|++|.++.++... .+.+ ...+++|+.|++++|.+++++. .+.+++.
T Consensus 178 ~~~~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~lp~---~l~~L~~--------- 245 (622)
T 3g06_A 178 MLPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPV---LPSELKE--------- 245 (622)
T ss_dssp CCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCCC---CCTTCCE---------
T ss_pred ccCCCCcEEECCCCCCCCCCCccchhhEEECcCCcccccCCCCCCCCEEEccCCccCcCCC---CCCcCcE---------
Confidence 34566777777777666532210 0000 0012455666666666655441 1222221
Q ss_pred hhcCCCCcc-ccccccccccccceeeccCCh
Q 001385 353 IMQDQENRV-VVGKDENAVRQLISMISSDNR 382 (1088)
Q Consensus 353 i~~l~~N~l-~ip~~~~~Lp~L~~L~Ls~N~ 382 (1088)
+++++|.+ .+|. .+++|+.|++++|.
T Consensus 246 -L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~ 272 (622)
T 3g06_A 246 -LMVSGNRLTSLPM---LPSGLLSLSVYRNQ 272 (622)
T ss_dssp -EECCSSCCSCCCC---CCTTCCEEECCSSC
T ss_pred -EECCCCCCCcCCc---ccccCcEEeCCCCC
Confidence 45667766 5555 57889999998886
No 85
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.75 E-value=5.3e-18 Score=183.10 Aligned_cols=181 Identities=15% Similarity=0.161 Sum_probs=158.2
Q ss_pred cchhhcCCCCCccEEEeeCCC-CCCCCccccccCccccEEeCcC-CCCCCCCccccccCCCCccEEEccCCCCCCccccc
Q 001385 116 VEMRVVKRREPLRAVVLTKGV-GSGHLSDGIGVLTRLMRSDLST-SGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDL 193 (1088)
Q Consensus 116 ~~~~~~~~l~~L~~L~Ls~n~-i~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l 193 (1088)
+....|..+++|++|++++|. ++...+..|.++++|++|+|++ |. +....+..|..+++|++|+|++|.++.+|. +
T Consensus 46 i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~-l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~ 123 (239)
T 2xwt_C 46 IPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN-LTYIDPDALKELPLLKFLGIFNTGLKMFPD-L 123 (239)
T ss_dssp ECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETT-CCEECTTSEECCTTCCEEEEEEECCCSCCC-C
T ss_pred ECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCC-eeEcCHHHhCCCCCCCEEeCCCCCCccccc-c
Confidence 344578899999999999997 8776667899999999999998 88 666667789999999999999999999997 8
Q ss_pred cCCCCCc---EEEccCC-CCCCCch-hhcCCCCCc-EEEccCCcCcccchhccCCCCCCEEEeccCC-CCCCcc-cccCC
Q 001385 194 TRLPVLE---KLYLDNN-KLSTLPP-ELGAMKNLK-VLIVDNNMLVCVPVELRECVGLVELSLEHNR-LVRPLL-DFRAM 265 (1088)
Q Consensus 194 ~~l~~L~---~L~L~~N-~l~~lp~-~l~~l~~L~-~L~Ls~N~l~~lp~~l~~l~~L~~L~Ls~N~-l~~~~~-~l~~l 265 (1088)
..+++|+ +|++++| +++.+|. .|..+++|+ .|++++|.++.+|......++|+.|+|++|. ++.+++ .|..+
T Consensus 124 ~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l 203 (239)
T 2xwt_C 124 TKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGV 203 (239)
T ss_dssp TTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTC
T ss_pred ccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhcc
Confidence 8888888 9999999 9997775 488999999 9999999999998866555899999999995 988765 58889
Q ss_pred -ccccEEEecCCCCCCCccccCCCCCCeEEeeCCC
Q 001385 266 -AELKILRLFGNPLEFLPEILPLLKLRHLSLANIR 299 (1088)
Q Consensus 266 -~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~L~~N~ 299 (1088)
++|+.|+|++|+++.+|.. .+++|+.|+++++.
T Consensus 204 ~~~L~~L~l~~N~l~~l~~~-~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 204 YSGPSLLDVSQTSVTALPSK-GLEHLKELIARNTW 237 (239)
T ss_dssp SBCCSEEECTTCCCCCCCCT-TCTTCSEEECTTC-
T ss_pred ccCCcEEECCCCccccCChh-HhccCceeeccCcc
Confidence 9999999999999977754 78899999998763
No 86
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.75 E-value=6.6e-18 Score=188.10 Aligned_cols=188 Identities=22% Similarity=0.175 Sum_probs=163.1
Q ss_pred EEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCccccccCCCCCcEEEccCCCC
Q 001385 130 VVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPVLEKLYLDNNKL 209 (1088)
Q Consensus 130 L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~N~l 209 (1088)
+.+..+.+.+. ..+..+++|+.|++++|. +... + .+..+++|++|+|++|.++.++. +..+++|++|+|++|.+
T Consensus 29 ~~l~~~~~~~~--~~~~~l~~L~~L~l~~~~-i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l 102 (291)
T 1h6t_A 29 DNLKKKSVTDA--VTQNELNSIDQIIANNSD-IKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKV 102 (291)
T ss_dssp HHTTCSCTTSE--ECHHHHHTCCEEECTTSC-CCCC-T-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred HHhcCCCcccc--cchhhcCcccEEEccCCC-cccC-h-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcC
Confidence 34555555543 235678999999999998 4443 3 47889999999999999999887 99999999999999999
Q ss_pred CCCchhhcCCCCCcEEEccCCcCcccchhccCCCCCCEEEeccCCCCCCcccccCCccccEEEecCCCCCCCccccCCCC
Q 001385 210 STLPPELGAMKNLKVLIVDNNMLVCVPVELRECVGLVELSLEHNRLVRPLLDFRAMAELKILRLFGNPLEFLPEILPLLK 289 (1088)
Q Consensus 210 ~~lp~~l~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~~~~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~ 289 (1088)
+.++ .+..+++|++|++++|.++.++ .+..+++|+.|++++|.++++ +.+..+++|+.|+|++|.++.++.+..+++
T Consensus 103 ~~~~-~l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~ 179 (291)
T 1h6t_A 103 KDLS-SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVPLAGLTK 179 (291)
T ss_dssp CCGG-GGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGGGTTCTT
T ss_pred CCCh-hhccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchhhcCCCc
Confidence 9876 4999999999999999999884 688999999999999999987 678999999999999999997777999999
Q ss_pred CCeEEeeCCCCCCCccccchhhhhcCcCCccccccccchhhhH
Q 001385 290 LRHLSLANIRIVADENLRSVNVQIEMENNSYFGASRHKLSAFF 332 (1088)
Q Consensus 290 L~~L~L~~N~l~~~~~l~~l~~~~~l~~l~~l~l~~n~l~~~~ 332 (1088)
|+.|+|++|.++..+.+. .+++|+.|++++|.+...+
T Consensus 180 L~~L~L~~N~i~~l~~l~------~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 180 LQNLYLSKNHISDLRALA------GLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp CCEEECCSSCCCBCGGGT------TCTTCSEEEEEEEEEECCC
T ss_pred cCEEECCCCcCCCChhhc------cCCCCCEEECcCCcccCCc
Confidence 999999999999876554 4889999999999987654
No 87
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.74 E-value=3e-17 Score=198.31 Aligned_cols=187 Identities=21% Similarity=0.213 Sum_probs=157.5
Q ss_pred CCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCccccccCCCCCcEEEc
Q 001385 125 EPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPVLEKLYL 204 (1088)
Q Consensus 125 ~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 204 (1088)
.+|+.|+|++|.+++ +|..+ +++|++|+|++|. +. .+| ..+++|++|+|++|+|+.+|. +.. +|++|+|
T Consensus 59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~-l~-~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNA-LI-SLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDV 127 (571)
T ss_dssp TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSC-CS-CCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEEC
T ss_pred CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCC-Cc-ccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEEC
Confidence 489999999999987 77655 3899999999998 44 455 467999999999999999998 665 9999999
Q ss_pred cCCCCCCCchhhcCCCCCcEEEccCCcCcccchhccCCCCCCEEEeccCCCCCCcccccCCccccEEEecCCCCCCCccc
Q 001385 205 DNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVELRECVGLVELSLEHNRLVRPLLDFRAMAELKILRLFGNPLEFLPEI 284 (1088)
Q Consensus 205 ~~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~~~~~l~~l~~L~~L~Ls~N~l~~l~~l 284 (1088)
++|+|+.+|. .+++|+.|+|++|.|+.+|. .+++|+.|+|++|.|++++. |. ++|+.|+|++|.|+.+|.+
T Consensus 128 s~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~~ 198 (571)
T 3cvr_A 128 DNNQLTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLPAV 198 (571)
T ss_dssp CSSCCSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCCC
T ss_pred CCCcCCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchhhH
Confidence 9999999987 78999999999999999987 67899999999999999776 65 8999999999999977774
Q ss_pred cCCCCC-------CeEEeeCCCCCCCcc-ccchhhhhcCcCCccccccccchhhhHH-hhhccc
Q 001385 285 LPLLKL-------RHLSLANIRIVADEN-LRSVNVQIEMENNSYFGASRHKLSAFFS-LIFRFS 339 (1088)
Q Consensus 285 ~~l~~L-------~~L~L~~N~l~~~~~-l~~l~~~~~l~~l~~l~l~~n~l~~~~~-~l~~l~ 339 (1088)
.. +| +.|+|++|.|+.++. +. .+++|+.|++++|.+++..+ .+..+.
T Consensus 199 ~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~------~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 199 PV--RNHHSEETEIFFRCRENRITHIPENIL------SLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp C----------CCEEEECCSSCCCCCCGGGG------GSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred HH--hhhcccccceEEecCCCcceecCHHHh------cCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 43 77 999999999998644 33 38899999999999987553 444443
No 88
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.73 E-value=1.2e-17 Score=203.98 Aligned_cols=174 Identities=20% Similarity=0.221 Sum_probs=153.7
Q ss_pred cCCCCCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCccccccCCCCCc
Q 001385 121 VKRREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPVLE 200 (1088)
Q Consensus 121 ~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~ 200 (1088)
+..+++|+.|+|++|.+.. ++ .+..|++|+.|+|++|. +....+ +..+++|+.|+|++|.|+.+| .+..+++|+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~-l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~ 112 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNK-LTDIKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLK 112 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSC-CCCCGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCC
T ss_pred hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCC-CCCChh--hccCCCCCEEECcCCCCCCCh-hhccCCCCC
Confidence 4567789999999999876 44 58899999999999998 555444 789999999999999999887 688999999
Q ss_pred EEEccCCCCCCCchhhcCCCCCcEEEccCCcCcccchhccCCCCCCEEEeccCCCCCCcccccCCccccEEEecCCCCCC
Q 001385 201 KLYLDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVELRECVGLVELSLEHNRLVRPLLDFRAMAELKILRLFGNPLEF 280 (1088)
Q Consensus 201 ~L~L~~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~~~~~l~~l~~L~~L~Ls~N~l~~ 280 (1088)
+|+|++|.++.++ .+..+++|+.|+|++|.|+.+ ..+..|++|+.|+|++|.+.+.++ +..+++|+.|+|++|.|+.
T Consensus 113 ~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~ 189 (605)
T 1m9s_A 113 SLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISD 189 (605)
T ss_dssp EEECTTSCCCCCG-GGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCB
T ss_pred EEEecCCCCCCCc-cccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCC
Confidence 9999999999875 688999999999999999988 578999999999999999998876 8899999999999999998
Q ss_pred CccccCCCCCCeEEeeCCCCCCC
Q 001385 281 LPEILPLLKLRHLSLANIRIVAD 303 (1088)
Q Consensus 281 l~~l~~l~~L~~L~L~~N~l~~~ 303 (1088)
++.+..+++|+.|+|++|.+...
T Consensus 190 l~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 190 LRALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CGGGTTCTTCSEEECCSEEEECC
T ss_pred ChHHccCCCCCEEEccCCcCcCC
Confidence 88899999999999999988764
No 89
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.73 E-value=3.9e-17 Score=177.73 Aligned_cols=154 Identities=25% Similarity=0.382 Sum_probs=142.0
Q ss_pred CCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCccc-cccCCCCCcEEE
Q 001385 125 EPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPV-DLTRLPVLEKLY 203 (1088)
Q Consensus 125 ~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~ 203 (1088)
++|+.|+|++|.+++..+..|.++++|++|+|++|. +....+..|..+++|++|+|++|.|+.+|. .+..+++|++|+
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 113 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLY 113 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc-CCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEE
Confidence 589999999999999888889999999999999999 777788889999999999999999998875 568999999999
Q ss_pred ccCCCCCCCchh-hcCCCCCcEEEccCCcCcccch-hccCCCCCCEEEeccCCCCCCcc-cccCCccccEEEecCCCCC
Q 001385 204 LDNNKLSTLPPE-LGAMKNLKVLIVDNNMLVCVPV-ELRECVGLVELSLEHNRLVRPLL-DFRAMAELKILRLFGNPLE 279 (1088)
Q Consensus 204 L~~N~l~~lp~~-l~~l~~L~~L~Ls~N~l~~lp~-~l~~l~~L~~L~Ls~N~l~~~~~-~l~~l~~L~~L~Ls~N~l~ 279 (1088)
|++|+|+.+|.. +..+++|++|+|++|.|+.+|. .+..+++|++|+|++|+++++++ .|..+++|+.|+|++|+++
T Consensus 114 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 114 LGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred cCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 999999988765 6899999999999999998877 68999999999999999999886 6899999999999999997
No 90
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.71 E-value=1.4e-17 Score=203.35 Aligned_cols=191 Identities=22% Similarity=0.183 Sum_probs=166.0
Q ss_pred ccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCccccccCCCCCcEEEccC
Q 001385 127 LRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPVLEKLYLDN 206 (1088)
Q Consensus 127 L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~ 206 (1088)
+..+++..+.+....+ +..|++|+.|+|++|. +... + .+..|++|+.|+|++|.|+.++. +..+++|+.|+|++
T Consensus 23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~-i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSD-IKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCC-CCCC-T-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCS
T ss_pred HHHHhccCCCcccccc--hhcCCCCCEEECcCCC-CCCC-h-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcC
Confidence 4445666666665433 6788999999999998 4433 3 57899999999999999998886 89999999999999
Q ss_pred CCCCCCchhhcCCCCCcEEEccCCcCcccchhccCCCCCCEEEeccCCCCCCcccccCCccccEEEecCCCCCCCccccC
Q 001385 207 NKLSTLPPELGAMKNLKVLIVDNNMLVCVPVELRECVGLVELSLEHNRLVRPLLDFRAMAELKILRLFGNPLEFLPEILP 286 (1088)
Q Consensus 207 N~l~~lp~~l~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~~~~~l~~l~~L~~L~Ls~N~l~~l~~l~~ 286 (1088)
|.|+.+| .+..+++|+.|+|++|.|+.++ .+..|++|+.|+|++|.++++ +.+..+++|+.|+|++|.|+.++.+..
T Consensus 97 N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~l~~ 173 (605)
T 1m9s_A 97 NKIKDLS-SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVPLAG 173 (605)
T ss_dssp SCCCCCT-TSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGGGTT
T ss_pred CCCCCCh-hhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchhhcc
Confidence 9999887 7899999999999999999875 689999999999999999987 678999999999999999997766999
Q ss_pred CCCCCeEEeeCCCCCCCccccchhhhhcCcCCccccccccchhhhH
Q 001385 287 LLKLRHLSLANIRIVADENLRSVNVQIEMENNSYFGASRHKLSAFF 332 (1088)
Q Consensus 287 l~~L~~L~L~~N~l~~~~~l~~l~~~~~l~~l~~l~l~~n~l~~~~ 332 (1088)
+++|+.|+|++|.|+.++.+. .+++|+.|+++.|.+...+
T Consensus 174 l~~L~~L~Ls~N~i~~l~~l~------~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 174 LTKLQNLYLSKNHISDLRALA------GLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp CTTCCEEECCSSCCCBCGGGT------TCTTCSEEECCSEEEECCC
T ss_pred CCCCCEEECcCCCCCCChHHc------cCCCCCEEEccCCcCcCCc
Confidence 999999999999999875554 4889999999999987754
No 91
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.71 E-value=2e-18 Score=200.57 Aligned_cols=212 Identities=19% Similarity=0.199 Sum_probs=152.8
Q ss_pred hhcCCCCCccEEEeeCCCCCCCCc----cccccCccccEEeCcCCCC--CCCCcccc-------ccCCCCccEEEccCCC
Q 001385 119 RVVKRREPLRAVVLTKGVGSGHLS----DGIGVLTRLMRSDLSTSGP--GNNMGSGF-------CDHWKTVTAVSLCGLG 185 (1088)
Q Consensus 119 ~~~~~l~~L~~L~Ls~n~i~~~~p----~~l~~l~~L~~L~Ls~N~l--~~~~~~~~-------~~~l~~L~~L~Ls~n~ 185 (1088)
..+..+++|+.|+|++|.++...+ ..+..+++|++|+|++|.+ +.+..|.. +..+++|++|+|++|.
T Consensus 26 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 105 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA 105 (386)
T ss_dssp HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred HHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence 566778889999999998876533 4466888999999988751 12223333 3678899999999998
Q ss_pred CCC-----ccccccCCCCCcEEEccCCCCC-----CCchhhcCC---------CCCcEEEccCCcCc--ccc---hhccC
Q 001385 186 LSA-----LPVDLTRLPVLEKLYLDNNKLS-----TLPPELGAM---------KNLKVLIVDNNMLV--CVP---VELRE 241 (1088)
Q Consensus 186 l~~-----lp~~l~~l~~L~~L~L~~N~l~-----~lp~~l~~l---------~~L~~L~Ls~N~l~--~lp---~~l~~ 241 (1088)
++. +|..+..+++|++|+|++|.++ .++..+..+ ++|++|+|++|.++ .++ ..+..
T Consensus 106 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 185 (386)
T 2ca6_A 106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 185 (386)
T ss_dssp CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHh
Confidence 885 6777888889999999999886 233334444 88999999999886 444 46778
Q ss_pred CCCCCEEEeccCCCCC-----Ccc-cccCCccccEEEecCCCCC-----CCc-cccCCCCCCeEEeeCCCCCCCccccch
Q 001385 242 CVGLVELSLEHNRLVR-----PLL-DFRAMAELKILRLFGNPLE-----FLP-EILPLLKLRHLSLANIRIVADENLRSV 309 (1088)
Q Consensus 242 l~~L~~L~Ls~N~l~~-----~~~-~l~~l~~L~~L~Ls~N~l~-----~l~-~l~~l~~L~~L~L~~N~l~~~~~l~~l 309 (1088)
+++|++|+|++|.++. +.+ .+..+++|+.|+|++|.++ .++ .+..+++|++|+|++|.++......-.
T Consensus 186 ~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~ 265 (386)
T 2ca6_A 186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV 265 (386)
T ss_dssp CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred CCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHH
Confidence 8889999999998872 233 6778888999999999884 333 567888899999999888753111100
Q ss_pred hhh--hcCcCCccccccccchhh
Q 001385 310 NVQ--IEMENNSYFGASRHKLSA 330 (1088)
Q Consensus 310 ~~~--~~l~~l~~l~l~~n~l~~ 330 (1088)
... ..+++|+.|++++|.++.
T Consensus 266 ~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 266 DAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp HHHHTCSSCCCCEEECCSSCCBH
T ss_pred HHHhhccCCCeEEEECcCCcCCH
Confidence 111 126778888888888766
No 92
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.70 E-value=2.1e-17 Score=181.23 Aligned_cols=170 Identities=21% Similarity=0.193 Sum_probs=141.9
Q ss_pred CCCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCccccccCCCCCcEEE
Q 001385 124 REPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPVLEKLY 203 (1088)
Q Consensus 124 l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~ 203 (1088)
+.++..+++++|.+++. + .+..+++|+.|++++|. +.. ++ .+..+++|++|+|++|.|+.++. +..+++|++|+
T Consensus 18 l~~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~-i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSN-IQS-LA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSC-CCC-CT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCC-ccc-ch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEE
Confidence 44566777888888763 3 57888999999999998 443 33 57788999999999999998887 88999999999
Q ss_pred ccCCCCCCCchhhcCCCCCcEEEccCCcCcccchhccCCCCCCEEEeccCCCCCCcccccCCccccEEEecCCCCCCCcc
Q 001385 204 LDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVELRECVGLVELSLEHNRLVRPLLDFRAMAELKILRLFGNPLEFLPE 283 (1088)
Q Consensus 204 L~~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~~~~~l~~l~~L~~L~Ls~N~l~~l~~ 283 (1088)
|++|+++.+|.. .. ++|++|+|++|.++.++ .+.++++|+.|+|++|++++++ .+..+++|+.|+|++|.++.++.
T Consensus 92 L~~N~l~~l~~~-~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~~~ 167 (263)
T 1xeu_A 92 VNRNRLKNLNGI-PS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNTGG 167 (263)
T ss_dssp CCSSCCSCCTTC-CC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBCTT
T ss_pred CCCCccCCcCcc-cc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcchHH
Confidence 999999987753 33 89999999999999876 5888999999999999998874 68889999999999999997788
Q ss_pred ccCCCCCCeEEeeCCCCCCC
Q 001385 284 ILPLLKLRHLSLANIRIVAD 303 (1088)
Q Consensus 284 l~~l~~L~~L~L~~N~l~~~ 303 (1088)
+..+++|+.|++++|+++..
T Consensus 168 l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 168 LTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp STTCCCCCEEEEEEEEEECC
T ss_pred hccCCCCCEEeCCCCcccCC
Confidence 88899999999999988764
No 93
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.70 E-value=8.7e-17 Score=194.27 Aligned_cols=191 Identities=22% Similarity=0.229 Sum_probs=150.5
Q ss_pred cccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCccccccCCCCCcEEEccCCCCCCCchhhcCCCCCcEEEccC
Q 001385 150 RLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPVLEKLYLDNNKLSTLPPELGAMKNLKVLIVDN 229 (1088)
Q Consensus 150 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~Ls~ 229 (1088)
+|+.|+|++|. +.+ +|..+ +++|++|+|++|.|+.+| ..+++|++|+|++|+|+.+|. +.+ +|++|+|++
T Consensus 60 ~L~~L~Ls~n~-L~~-lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLN-LSS-LPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSC-CSC-CCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCCC-CCc-cCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCC
Confidence 89999999998 454 55544 378999999999999999 457999999999999999998 665 999999999
Q ss_pred CcCcccchhccCCCCCCEEEeccCCCCCCcccccCCccccEEEecCCCCCCCccccCCCCCCeEEeeCCCCCCCccccch
Q 001385 230 NMLVCVPVELRECVGLVELSLEHNRLVRPLLDFRAMAELKILRLFGNPLEFLPEILPLLKLRHLSLANIRIVADENLRSV 309 (1088)
Q Consensus 230 N~l~~lp~~l~~l~~L~~L~Ls~N~l~~~~~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~L~~N~l~~~~~l~~l 309 (1088)
|.|+.+|. .+++|+.|+|++|.|++++. .+++|+.|+|++|.|+.+|.+. ++|+.|+|++|.|+.++.+..
T Consensus 130 N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~l~--~~L~~L~Ls~N~L~~lp~~~~- 200 (571)
T 3cvr_A 130 NQLTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPELP--ESLEALDVSTNLLESLPAVPV- 200 (571)
T ss_dssp SCCSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCCCC--TTCCEEECCSSCCSSCCCCC--
T ss_pred CcCCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcchhh--CCCCEEECcCCCCCchhhHHH-
Confidence 99999987 68999999999999998765 5789999999999999888744 899999999999998665332
Q ss_pred hhhhcCcCCccccccccchhhhHHhhhcccCCCCcchhHHHhhhhcCCCCcc--cccccccc
Q 001385 310 NVQIEMENNSYFGASRHKLSAFFSLIFRFSSCHHPLLASALAKIMQDQENRV--VVGKDENA 369 (1088)
Q Consensus 310 ~~~~~l~~l~~l~l~~n~l~~~~~~l~~l~~l~~l~l~~~L~~i~~l~~N~l--~ip~~~~~ 369 (1088)
.+......++.|++++|.|+.+|..++.+.++.. +++.+|.+ .+|..+..
T Consensus 201 ~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~----------L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 201 RNHHSEETEIFFRCRENRITHIPENILSLDPTCT----------IILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp -------CCEEEECCSSCCCCCCGGGGGSCTTEE----------EECCSSSCCHHHHHHHHH
T ss_pred hhhcccccceEEecCCCcceecCHHHhcCCCCCE----------EEeeCCcCCCcCHHHHHH
Confidence 1111123338899999998887776766666554 34566655 44444443
No 94
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.69 E-value=6.6e-18 Score=194.33 Aligned_cols=239 Identities=14% Similarity=0.038 Sum_probs=172.1
Q ss_pred hhcCCCCCccEEEeeCCCCCCCCc----cccccCc-cccEEeCcCCCCCCCCccccccCC-----CCccEEEccCCCCCC
Q 001385 119 RVVKRREPLRAVVLTKGVGSGHLS----DGIGVLT-RLMRSDLSTSGPGNNMGSGFCDHW-----KTVTAVSLCGLGLSA 188 (1088)
Q Consensus 119 ~~~~~l~~L~~L~Ls~n~i~~~~p----~~l~~l~-~L~~L~Ls~N~l~~~~~~~~~~~l-----~~L~~L~Ls~n~l~~ 188 (1088)
..+...++|++|+|++|.+++..+ ..+.+++ +|++|+|++|. +....+..+..+ ++|++|+|++|.++.
T Consensus 16 ~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~ 94 (362)
T 3goz_A 16 EFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNS-LGFKNSDELVQILAAIPANVTSLNLSGNFLSY 94 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG
T ss_pred HHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCC-CCHHHHHHHHHHHhccCCCccEEECcCCcCCh
Confidence 344555669999999999887665 6778888 89999999998 555555555554 899999999999985
Q ss_pred ccc-----cccCC-CCCcEEEccCCCCCCCch-h----hcC-CCCCcEEEccCCcCc-----ccchhccCCC-CCCEEEe
Q 001385 189 LPV-----DLTRL-PVLEKLYLDNNKLSTLPP-E----LGA-MKNLKVLIVDNNMLV-----CVPVELRECV-GLVELSL 250 (1088)
Q Consensus 189 lp~-----~l~~l-~~L~~L~L~~N~l~~lp~-~----l~~-l~~L~~L~Ls~N~l~-----~lp~~l~~l~-~L~~L~L 250 (1088)
.+. .+..+ ++|++|+|++|+++..+. . +.. .++|++|+|++|.++ .++..+..++ +|++|+|
T Consensus 95 ~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~L 174 (362)
T 3goz_A 95 KSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNL 174 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEEC
T ss_pred HHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeee
Confidence 443 25555 899999999999985442 2 344 369999999999988 5556666666 9999999
Q ss_pred ccCCCCCCcc-----cccCC-ccccEEEecCCCCCC-----Cc-cccC-CCCCCeEEeeCCCCCCCccccchhhhhcCcC
Q 001385 251 EHNRLVRPLL-----DFRAM-AELKILRLFGNPLEF-----LP-EILP-LLKLRHLSLANIRIVADENLRSVNVQIEMEN 317 (1088)
Q Consensus 251 s~N~l~~~~~-----~l~~l-~~L~~L~Ls~N~l~~-----l~-~l~~-l~~L~~L~L~~N~l~~~~~l~~l~~~~~l~~ 317 (1088)
++|.+++... .+..+ ++|+.|+|++|.|+. ++ .+.. .++|++|+|++|.++..+.-.-....-.+++
T Consensus 175 s~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~ 254 (362)
T 3goz_A 175 RGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKH 254 (362)
T ss_dssp TTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTT
T ss_pred cCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCC
Confidence 9999977653 24555 599999999999884 33 3444 4589999999999987532111111234778
Q ss_pred CccccccccchhhhHHhhhcccCCCCcchhHHHhhhhcCCCCccccccccccccccceeeccCCh
Q 001385 318 NSYFGASRHKLSAFFSLIFRFSSCHHPLLASALAKIMQDQENRVVVGKDENAVRQLISMISSDNR 382 (1088)
Q Consensus 318 l~~l~l~~n~l~~~~~~l~~l~~l~~l~l~~~L~~i~~l~~N~l~ip~~~~~Lp~L~~L~Ls~N~ 382 (1088)
|+.|+++.|.+..+..... . .++..+..+++|+.|++++|.
T Consensus 255 L~~L~L~~n~l~~i~~~~~--------------~----------~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 255 LQTVYLDYDIVKNMSKEQC--------------K----------ALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp CSEEEEEHHHHTTCCHHHH--------------H----------HHHTTSTTCCEEEEECTTSCB
T ss_pred ccEEEeccCCccccCHHHH--------------H----------HHHHHhccCCceEEEecCCCc
Confidence 8899999988655332110 0 223345578889999999997
No 95
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.69 E-value=1.2e-17 Score=198.58 Aligned_cols=175 Identities=21% Similarity=0.174 Sum_probs=84.1
Q ss_pred CccEEEeeCCCCCC----CCccccccCccccEEeCcCCCCCCCCcccc-----ccCCCCccEEEccCCCCCC-----ccc
Q 001385 126 PLRAVVLTKGVGSG----HLSDGIGVLTRLMRSDLSTSGPGNNMGSGF-----CDHWKTVTAVSLCGLGLSA-----LPV 191 (1088)
Q Consensus 126 ~L~~L~Ls~n~i~~----~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~-----~~~l~~L~~L~Ls~n~l~~-----lp~ 191 (1088)
+|++|+|++|.++. .++..+..+++|++|+|++|. +....+.. ...+++|++|+|++|.++. ++.
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~ 164 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS 164 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHH
Confidence 46666666666553 235555666666666666665 22211111 1123456666666665552 233
Q ss_pred cccCCCCCcEEEccCCCCCCC-chhhc-----CCCCCcEEEccCCcCcc-----cchhccCCCCCCEEEeccCCCCCCc-
Q 001385 192 DLTRLPVLEKLYLDNNKLSTL-PPELG-----AMKNLKVLIVDNNMLVC-----VPVELRECVGLVELSLEHNRLVRPL- 259 (1088)
Q Consensus 192 ~l~~l~~L~~L~L~~N~l~~l-p~~l~-----~l~~L~~L~Ls~N~l~~-----lp~~l~~l~~L~~L~Ls~N~l~~~~- 259 (1088)
.+..+++|++|+|++|.++.. +..+. .+++|++|++++|.++. ++..+..+++|++|++++|.++...
T Consensus 165 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 244 (461)
T 1z7x_W 165 VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 244 (461)
T ss_dssp HHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred HHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHH
Confidence 444455555555555555411 11111 23455555555555552 3444455555555555555544321
Q ss_pred ----cc-ccCCccccEEEecCCCCCC-----Cc-cccCCCCCCeEEeeCCCCC
Q 001385 260 ----LD-FRAMAELKILRLFGNPLEF-----LP-EILPLLKLRHLSLANIRIV 301 (1088)
Q Consensus 260 ----~~-l~~l~~L~~L~Ls~N~l~~-----l~-~l~~l~~L~~L~L~~N~l~ 301 (1088)
+. +..+++|+.|+|++|.++. ++ .+..+++|++|+|++|.++
T Consensus 245 ~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 297 (461)
T 1z7x_W 245 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG 297 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCH
T ss_pred HHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCc
Confidence 11 2234555555555555542 22 2334455555555555443
No 96
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.68 E-value=4.9e-18 Score=197.16 Aligned_cols=230 Identities=18% Similarity=0.119 Sum_probs=177.6
Q ss_pred CccccccCccccEEeCcCCCCCCCC----ccccccCCCCccEEEccCCCCC----Cccccc-------cCCCCCcEEEcc
Q 001385 141 LSDGIGVLTRLMRSDLSTSGPGNNM----GSGFCDHWKTVTAVSLCGLGLS----ALPVDL-------TRLPVLEKLYLD 205 (1088)
Q Consensus 141 ~p~~l~~l~~L~~L~Ls~N~l~~~~----~~~~~~~l~~L~~L~Ls~n~l~----~lp~~l-------~~l~~L~~L~L~ 205 (1088)
++..+..+++|+.|+|++|. +... ++..+..+++|++|+|++|.+. .+|..+ ..+++|++|+|+
T Consensus 24 l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNT-IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSE-ECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHhcCCCccEEECCCCC-CCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 66778889999999999998 4443 3345778999999999998766 344444 789999999999
Q ss_pred CCCCCC-----CchhhcCCCCCcEEEccCCcCc-----ccchhccCC---------CCCCEEEeccCCCCCC--c---cc
Q 001385 206 NNKLST-----LPPELGAMKNLKVLIVDNNMLV-----CVPVELREC---------VGLVELSLEHNRLVRP--L---LD 261 (1088)
Q Consensus 206 ~N~l~~-----lp~~l~~l~~L~~L~Ls~N~l~-----~lp~~l~~l---------~~L~~L~Ls~N~l~~~--~---~~ 261 (1088)
+|.++. +|..+..+++|++|+|++|.++ .++..+..+ ++|++|+|++|.++.. + ..
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 999985 7778899999999999999997 344445555 8999999999999732 2 24
Q ss_pred ccCCccccEEEecCCCCC------CCc-cccCCCCCCeEEeeCCCCCCC--ccccchhhhhcCcCCccccccccchhhh-
Q 001385 262 FRAMAELKILRLFGNPLE------FLP-EILPLLKLRHLSLANIRIVAD--ENLRSVNVQIEMENNSYFGASRHKLSAF- 331 (1088)
Q Consensus 262 l~~l~~L~~L~Ls~N~l~------~l~-~l~~l~~L~~L~L~~N~l~~~--~~l~~l~~~~~l~~l~~l~l~~n~l~~~- 331 (1088)
+..+++|+.|+|++|.++ .++ .+..+++|++|+|++|.++.. ..+.. ....+++|+.|++++|.++..
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~--~l~~~~~L~~L~L~~n~i~~~~ 260 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI--ALKSWPNLRELGLNDCLLSARG 260 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH--HGGGCTTCCEEECTTCCCCHHH
T ss_pred HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH--HHccCCCcCEEECCCCCCchhh
Confidence 778899999999999998 355 778899999999999998631 11111 123488999999999999875
Q ss_pred ----HHhh--hcccCCCCcchhHHHhhhhcCCCCcc-c-----ccccc-ccccccceeeccCChh
Q 001385 332 ----FSLI--FRFSSCHHPLLASALAKIMQDQENRV-V-----VGKDE-NAVRQLISMISSDNRH 383 (1088)
Q Consensus 332 ----~~~l--~~l~~l~~l~l~~~L~~i~~l~~N~l-~-----ip~~~-~~Lp~L~~L~Ls~N~~ 383 (1088)
+..+ ..+.+++. +++.+|.+ . ++..+ ..+++|+.|++++|+.
T Consensus 261 ~~~l~~~l~~~~~~~L~~----------L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l 315 (386)
T 2ca6_A 261 AAAVVDAFSKLENIGLQT----------LRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315 (386)
T ss_dssp HHHHHHHHHTCSSCCCCE----------EECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred HHHHHHHHhhccCCCeEE----------EECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcC
Confidence 2333 22555554 45677776 3 66666 5689999999999983
No 97
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.68 E-value=3e-17 Score=179.89 Aligned_cols=172 Identities=20% Similarity=0.210 Sum_probs=152.4
Q ss_pred cCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCccccccCCCCCcEEEccCCCCCCCchhhcCCCCCcEEE
Q 001385 147 VLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPVLEKLYLDNNKLSTLPPELGAMKNLKVLI 226 (1088)
Q Consensus 147 ~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~ 226 (1088)
.+.++..+++++|. +.+.. .+..+++|++|++++|.|+.++ .+..+++|++|+|++|+++.++. +..+++|++|+
T Consensus 17 ~l~~l~~l~l~~~~-i~~~~--~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~ 91 (263)
T 1xeu_A 17 GLANAVKQNLGKQS-VTDLV--SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHHTCSC-TTSEE--CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEE
T ss_pred HHHHHHHHHhcCCC-ccccc--chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEE
Confidence 56778888999998 44333 5678999999999999999998 78899999999999999999887 99999999999
Q ss_pred ccCCcCcccchhccCCCCCCEEEeccCCCCCCcccccCCccccEEEecCCCCCCCccccCCCCCCeEEeeCCCCCCCccc
Q 001385 227 VDNNMLVCVPVELRECVGLVELSLEHNRLVRPLLDFRAMAELKILRLFGNPLEFLPEILPLLKLRHLSLANIRIVADENL 306 (1088)
Q Consensus 227 Ls~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~~~~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~L~~N~l~~~~~l 306 (1088)
|++|+++.+|.... ++|+.|+|++|.+++. +.+..+++|+.|+|++|+++.++.+..+++|+.|+|++|.++....+
T Consensus 92 L~~N~l~~l~~~~~--~~L~~L~L~~N~l~~~-~~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~~~l 168 (263)
T 1xeu_A 92 VNRNRLKNLNGIPS--ACLSRLFLDNNELRDT-DSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGL 168 (263)
T ss_dssp CCSSCCSCCTTCCC--SSCCEEECCSSCCSBS-GGGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBCTTS
T ss_pred CCCCccCCcCcccc--CcccEEEccCCccCCC-hhhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcchHHh
Confidence 99999998875433 9999999999999986 46899999999999999999888899999999999999999987544
Q ss_pred cchhhhhcCcCCccccccccchhhhH
Q 001385 307 RSVNVQIEMENNSYFGASRHKLSAFF 332 (1088)
Q Consensus 307 ~~l~~~~~l~~l~~l~l~~n~l~~~~ 332 (1088)
. .+++|+.+++++|.+...+
T Consensus 169 ~------~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 169 T------RLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp T------TCCCCCEEEEEEEEEECCC
T ss_pred c------cCCCCCEEeCCCCcccCCc
Confidence 4 4889999999999988765
No 98
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.67 E-value=2e-16 Score=165.35 Aligned_cols=128 Identities=15% Similarity=0.198 Sum_probs=58.4
Q ss_pred CCCCccEEEccCCCCCCccccccCCCCCcEEEccCCCCC-CCchhhcCCCCCcEEEccCCcCc-ccchhccCCCCCCEEE
Q 001385 172 HWKTVTAVSLCGLGLSALPVDLTRLPVLEKLYLDNNKLS-TLPPELGAMKNLKVLIVDNNMLV-CVPVELRECVGLVELS 249 (1088)
Q Consensus 172 ~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~ 249 (1088)
.+++|++|+|++|.++.++ .+..+++|++|++++|+++ ..+..+..+++|++|++++|.++ ..|..+.++++|++|+
T Consensus 64 ~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~ 142 (197)
T 4ezg_A 64 YAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSID 142 (197)
T ss_dssp GCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEE
T ss_pred cCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEE
Confidence 3444444444444333332 3444444444444444444 23334444444444444444444 2334444455555555
Q ss_pred eccCC-CCCCcccccCCccccEEEecCCCCCCCccccCCCCCCeEEeeCCCCC
Q 001385 250 LEHNR-LVRPLLDFRAMAELKILRLFGNPLEFLPEILPLLKLRHLSLANIRIV 301 (1088)
Q Consensus 250 Ls~N~-l~~~~~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~L~~N~l~ 301 (1088)
+++|. ++.+ +.+..+++|+.|++++|.++.++.+..+++|++|++++|+|.
T Consensus 143 L~~n~~i~~~-~~l~~l~~L~~L~l~~n~i~~~~~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 143 LSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CCSCTBCCCC-GGGGGCSSCCEEECTTBCCCCCTTGGGCSSCCEEEECBC---
T ss_pred ccCCCCcccc-HhhcCCCCCCEEECCCCCCcChHHhccCCCCCEEEeeCcccC
Confidence 55554 3333 244445555555555555554444555555555555555543
No 99
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.66 E-value=1e-15 Score=164.11 Aligned_cols=149 Identities=26% Similarity=0.323 Sum_probs=98.8
Q ss_pred ccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCcccc-ccCCCCCcEEEcc
Q 001385 127 LRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVD-LTRLPVLEKLYLD 205 (1088)
Q Consensus 127 L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~ 205 (1088)
.+.++.+++.+.. +|..+. ++|++|+|++|. +....+..|..+++|++|+|++|.|+.+|.. +..+++|++|+|+
T Consensus 21 ~~~v~c~~~~l~~-ip~~~~--~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 21 GTTVDCRSKRHAS-VPAGIP--TNAQILYLHDNQ-ITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp TTEEECTTSCCSS-CCSCCC--TTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEeEccCCCcCc-cCCCCC--CCCCEEEcCCCc-cCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 3467777776654 554443 677777777777 5666666777777777777777777777643 4677777777777
Q ss_pred CCCCCCCchh-hcCCCCCcEEEccCCcCcccchhccCCCCCCEEEeccCCCCCCcc-cccCCccccEEEecCCCCC
Q 001385 206 NNKLSTLPPE-LGAMKNLKVLIVDNNMLVCVPVELRECVGLVELSLEHNRLVRPLL-DFRAMAELKILRLFGNPLE 279 (1088)
Q Consensus 206 ~N~l~~lp~~-l~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~~~~-~l~~l~~L~~L~Ls~N~l~ 279 (1088)
+|+|+.++.. +..+++|++|+|++|.|+.+|..+..+++|+.|+|++|+++.+++ .|..+++|+.|+|++|.+.
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 7777766543 466777777777777777777666666677777776666666553 3555555555555555544
No 100
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.65 E-value=6.2e-18 Score=200.98 Aligned_cols=251 Identities=21% Similarity=0.126 Sum_probs=138.5
Q ss_pred hhcCCCCCccEEEeeCCCCCCCCcccc-ccCc----cccEEeCcCCCCCCC----CccccccCCCCccEEEccCCCCCC-
Q 001385 119 RVVKRREPLRAVVLTKGVGSGHLSDGI-GVLT----RLMRSDLSTSGPGNN----MGSGFCDHWKTVTAVSLCGLGLSA- 188 (1088)
Q Consensus 119 ~~~~~l~~L~~L~Ls~n~i~~~~p~~l-~~l~----~L~~L~Ls~N~l~~~----~~~~~~~~l~~L~~L~Ls~n~l~~- 188 (1088)
..+..+++|++|+|++|.+.+..+..+ ..++ +|++|+|++|. +.. .++..+..+++|++|+|++|.++.
T Consensus 50 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 128 (461)
T 1z7x_W 50 SALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDA 128 (461)
T ss_dssp HHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHH
T ss_pred HHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCC-CCHHHHHHHHHHHccCCceeEEECCCCcCchH
Confidence 445566777777777776654333222 2233 57777777776 332 235566667777777777777652
Q ss_pred ----cccc-ccCCCCCcEEEccCCCCCC-----CchhhcCCCCCcEEEccCCcCcc-----cchhcc-CCCCCCEEEecc
Q 001385 189 ----LPVD-LTRLPVLEKLYLDNNKLST-----LPPELGAMKNLKVLIVDNNMLVC-----VPVELR-ECVGLVELSLEH 252 (1088)
Q Consensus 189 ----lp~~-l~~l~~L~~L~L~~N~l~~-----lp~~l~~l~~L~~L~Ls~N~l~~-----lp~~l~-~l~~L~~L~Ls~ 252 (1088)
+... ...+++|++|+|++|+++. ++..+..+++|++|++++|.++. +...+. .+++|++|++++
T Consensus 129 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 208 (461)
T 1z7x_W 129 GLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLES 208 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTT
T ss_pred HHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccC
Confidence 1112 1224567777777777662 34455566777777777777652 111221 345677777777
Q ss_pred CCCCCC-----cccccCCccccEEEecCCCCCCC------ccc-cCCCCCCeEEeeCCCCCCCc--cccchhhhhcCcCC
Q 001385 253 NRLVRP-----LLDFRAMAELKILRLFGNPLEFL------PEI-LPLLKLRHLSLANIRIVADE--NLRSVNVQIEMENN 318 (1088)
Q Consensus 253 N~l~~~-----~~~l~~l~~L~~L~Ls~N~l~~l------~~l-~~l~~L~~L~L~~N~l~~~~--~l~~l~~~~~l~~l 318 (1088)
|.++.. +..+..+++|+.|+|++|.++.. +.+ ..+++|++|++++|.++... .+.. ....+++|
T Consensus 209 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~--~l~~~~~L 286 (461)
T 1z7x_W 209 CGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR--VLRAKESL 286 (461)
T ss_dssp SCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH--HHHHCTTC
T ss_pred CCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHH--HHhhCCCc
Confidence 777653 23455667777777777766521 112 24667777777777666421 1111 11236667
Q ss_pred ccccccccchhhhHH-hhhc-----ccCCCCcchhHHHhhhhcCCCCcc------ccccccccccccceeeccCCh
Q 001385 319 SYFGASRHKLSAFFS-LIFR-----FSSCHHPLLASALAKIMQDQENRV------VVGKDENAVRQLISMISSDNR 382 (1088)
Q Consensus 319 ~~l~l~~n~l~~~~~-~l~~-----l~~l~~l~l~~~L~~i~~l~~N~l------~ip~~~~~Lp~L~~L~Ls~N~ 382 (1088)
+.|++++|.+..... .+.. ..+++. +++.+|.+ .++..+..+++|+.|++++|.
T Consensus 287 ~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~----------L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 352 (461)
T 1z7x_W 287 KELSLAGNELGDEGARLLCETLLEPGCQLES----------LWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR 352 (461)
T ss_dssp CEEECTTCCCHHHHHHHHHHHHTSTTCCCCE----------EECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSB
T ss_pred ceEECCCCCCchHHHHHHHHHhccCCcccee----------eEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCc
Confidence 777777777654332 1111 122322 23444544 134455566777777777774
No 101
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.65 E-value=3.6e-16 Score=179.75 Aligned_cols=177 Identities=22% Similarity=0.276 Sum_probs=143.1
Q ss_pred cEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCcccccc-CCCCccEEEccCCCCCCccc-cccCCCCCcEEEcc
Q 001385 128 RAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCD-HWKTVTAVSLCGLGLSALPV-DLTRLPVLEKLYLD 205 (1088)
Q Consensus 128 ~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~-~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~ 205 (1088)
+.+++++++++. +|..+. ..|+.|+|++|+ +....+..+. .+++|++|+|++|+|+.++. .+..+++|++|+|+
T Consensus 21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC--TTCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcCc-cCccCC--CCCCEEECCCCC-CCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 578888888866 665553 468899999998 6666667776 89999999999999998774 58889999999999
Q ss_pred CCCCCCCch-hhcCCCCCcEEEccCCcCccc-chhccCCCCCCEEEeccCCCCCCccc-c---cCCccccEEEecCCCCC
Q 001385 206 NNKLSTLPP-ELGAMKNLKVLIVDNNMLVCV-PVELRECVGLVELSLEHNRLVRPLLD-F---RAMAELKILRLFGNPLE 279 (1088)
Q Consensus 206 ~N~l~~lp~-~l~~l~~L~~L~Ls~N~l~~l-p~~l~~l~~L~~L~Ls~N~l~~~~~~-l---~~l~~L~~L~Ls~N~l~ 279 (1088)
+|+|+.++. .|..+++|++|+|++|.|+.+ |..|.++++|+.|+|++|.|+.++.. | ..+++|+.|+|++|+|+
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 999996664 578899999999999999966 56788999999999999999988764 3 57899999999999999
Q ss_pred CCc--cccCCCC--CCeEEeeCCCCCCCccccc
Q 001385 280 FLP--EILPLLK--LRHLSLANIRIVADENLRS 308 (1088)
Q Consensus 280 ~l~--~l~~l~~--L~~L~L~~N~l~~~~~l~~ 308 (1088)
.++ .+..+++ |+.|+|++|++.+.+.+..
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~l~~ 209 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNPLECDCKLYQ 209 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSCEECCHHHHH
T ss_pred ccCHHHhhhccHhhcceEEecCCCccCCcCcHH
Confidence 666 4666666 4889999999988765543
No 102
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.65 E-value=6.7e-16 Score=162.79 Aligned_cols=145 Identities=26% Similarity=0.368 Sum_probs=74.5
Q ss_pred EEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCcccc-ccCCCCCcEEEccCC
Q 001385 129 AVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVD-LTRLPVLEKLYLDNN 207 (1088)
Q Consensus 129 ~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~N 207 (1088)
.++.+++.++. +|..+ .++|++|+|++|. +....+..+..+++|++|+|++|+++.++.. +..+++|++|+|++|
T Consensus 11 ~v~c~~~~l~~-~p~~~--~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 11 TVECYSQGRTS-VPTGI--PAQTTYLDLETNS-LKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp EEECCSSCCSS-CCSCC--CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEEecCCCccC-CCCCC--CCCCcEEEcCCCc-cCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 44555555443 33222 2456666666665 3444444455556666666666655555443 345555555555555
Q ss_pred CCCCCchh-hcCCCCCcEEEccCCcCcccchh-ccCCCCCCEEEeccCCCCCCccc-ccCCccccEEEecCCC
Q 001385 208 KLSTLPPE-LGAMKNLKVLIVDNNMLVCVPVE-LRECVGLVELSLEHNRLVRPLLD-FRAMAELKILRLFGNP 277 (1088)
Q Consensus 208 ~l~~lp~~-l~~l~~L~~L~Ls~N~l~~lp~~-l~~l~~L~~L~Ls~N~l~~~~~~-l~~l~~L~~L~Ls~N~ 277 (1088)
+++.++.. +..+++|++|+|++|.++.++.. +.++++|+.|+|++|.++++++. +..+++|+.|+|++|.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCC
Confidence 55544432 35555555555555555544432 34555555555555555544432 4445555555555553
No 103
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.65 E-value=3e-17 Score=186.48 Aligned_cols=197 Identities=22% Similarity=0.165 Sum_probs=134.8
Q ss_pred CCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCC-ccccccCCCCccEEEccCCCCC-CccccccCCCCCcEE
Q 001385 125 EPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNM-GSGFCDHWKTVTAVSLCGLGLS-ALPVDLTRLPVLEKL 202 (1088)
Q Consensus 125 ~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-~~~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 202 (1088)
++++.|++++|.+.+..+. +..+++|++|+|++|. +... .+..+..+++|++|+|++|.++ ..+..+..+++|++|
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L 147 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL 147 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCC-cCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEE
Confidence 6777888888877765544 5567788888888876 3333 5666777788888888888777 556667777888888
Q ss_pred EccCC-CCC--CCchhhcCCCCCcEEEccCC-cCc--ccchhccCCC-CCCEEEeccCC--CCC--CcccccCCccccEE
Q 001385 203 YLDNN-KLS--TLPPELGAMKNLKVLIVDNN-MLV--CVPVELRECV-GLVELSLEHNR--LVR--PLLDFRAMAELKIL 271 (1088)
Q Consensus 203 ~L~~N-~l~--~lp~~l~~l~~L~~L~Ls~N-~l~--~lp~~l~~l~-~L~~L~Ls~N~--l~~--~~~~l~~l~~L~~L 271 (1088)
+|++| .++ .++..+..+++|++|++++| .++ .++..+..++ +|++|++++|. ++. ++..+..+++|+.|
T Consensus 148 ~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L 227 (336)
T 2ast_B 148 NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 227 (336)
T ss_dssp ECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEE
T ss_pred ECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEE
Confidence 88887 566 36666777788888888887 777 2566677777 88888888773 431 22345667788888
Q ss_pred EecCCC-CC--CCccccCCCCCCeEEeeCCCCCCCccccchhhhhcCcCCcccccccc
Q 001385 272 RLFGNP-LE--FLPEILPLLKLRHLSLANIRIVADENLRSVNVQIEMENNSYFGASRH 326 (1088)
Q Consensus 272 ~Ls~N~-l~--~l~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~~~~l~~l~~l~l~~n 326 (1088)
+|++|. ++ .++.+..+++|++|++++|.-.....+.. ...+++|+.|++++|
T Consensus 228 ~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~---l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 228 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLE---LGEIPTLKTLQVFGI 282 (336)
T ss_dssp ECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGG---GGGCTTCCEEECTTS
T ss_pred eCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHH---HhcCCCCCEEeccCc
Confidence 888877 54 34567777788888888775222222222 224777777777776
No 104
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.65 E-value=4.2e-16 Score=162.90 Aligned_cols=152 Identities=12% Similarity=0.176 Sum_probs=134.3
Q ss_pred cCCCCccEEEccCCCCCCccccccCCCCCcEEEccCCCCCCCchhhcCCCCCcEEEccCCcCcc-cchhccCCCCCCEEE
Q 001385 171 DHWKTVTAVSLCGLGLSALPVDLTRLPVLEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNMLVC-VPVELRECVGLVELS 249 (1088)
Q Consensus 171 ~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~ 249 (1088)
..+++|++|++++|.++.+| .+..+++|++|++++|.++.++ .+..+++|++|++++|.++. .+..+..+++|++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 57789999999999999988 7899999999999999887775 78999999999999999994 778899999999999
Q ss_pred eccCCCCCCc-ccccCCccccEEEecCCC-CCCCccccCCCCCCeEEeeCCCCCCCccccchhhhhcCcCCccccccccc
Q 001385 250 LEHNRLVRPL-LDFRAMAELKILRLFGNP-LEFLPEILPLLKLRHLSLANIRIVADENLRSVNVQIEMENNSYFGASRHK 327 (1088)
Q Consensus 250 Ls~N~l~~~~-~~l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~~~~l~~l~~l~l~~n~ 327 (1088)
+++|.+++.. ..+..+++|+.|+|++|. ++.++.+..+++|++|++++|.++.++.+. .+++|+.+++++|+
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~~~l~------~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGIE------DFPKLNQLYAFSQT 192 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCCTTGG------GCSSCCEEEECBC-
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcChHHhc------cCCCCCEEEeeCcc
Confidence 9999998754 468999999999999998 888889999999999999999999876555 48899999999998
Q ss_pred hhh
Q 001385 328 LSA 330 (1088)
Q Consensus 328 l~~ 330 (1088)
+..
T Consensus 193 i~~ 195 (197)
T 4ezg_A 193 IGG 195 (197)
T ss_dssp ---
T ss_pred cCC
Confidence 764
No 105
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.63 E-value=9.6e-16 Score=161.57 Aligned_cols=157 Identities=20% Similarity=0.205 Sum_probs=136.0
Q ss_pred CCCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCcccc-ccCCCCCcEE
Q 001385 124 REPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVD-LTRLPVLEKL 202 (1088)
Q Consensus 124 l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L 202 (1088)
.++|++|+|++|.+++..+..|.++++|++|+|++|+ +....+..|..+++|++|+|++|.++.+|.. +..+++|++|
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKEL 105 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCc-cCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEE
Confidence 4689999999999998777778999999999999999 6677777788999999999999999988865 6899999999
Q ss_pred EccCCCCCCCchh-hcCCCCCcEEEccCCcCcccchh-ccCCCCCCEEEeccCCCCCCcccccCCccccEEEecCCCCC-
Q 001385 203 YLDNNKLSTLPPE-LGAMKNLKVLIVDNNMLVCVPVE-LRECVGLVELSLEHNRLVRPLLDFRAMAELKILRLFGNPLE- 279 (1088)
Q Consensus 203 ~L~~N~l~~lp~~-l~~l~~L~~L~Ls~N~l~~lp~~-l~~l~~L~~L~Ls~N~l~~~~~~l~~l~~L~~L~Ls~N~l~- 279 (1088)
+|++|+++.++.. +..+++|++|+|++|.++.++.. +..+++|+.|++++|.+.+ .+++|+.|+++.|.++
T Consensus 106 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~------~~~~l~~L~~~~n~~~g 179 (208)
T 2o6s_A 106 ALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC------TCPGIRYLSEWINKHSG 179 (208)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC------CTTTTHHHHHHHHHCTT
T ss_pred EcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec------CCCCHHHHHHHHHhCCc
Confidence 9999999987754 78999999999999999988765 7889999999999998764 4678889999999888
Q ss_pred CCc-cccCC
Q 001385 280 FLP-EILPL 287 (1088)
Q Consensus 280 ~l~-~l~~l 287 (1088)
.+| .++.+
T Consensus 180 ~ip~~~~~l 188 (208)
T 2o6s_A 180 VVRNSAGSV 188 (208)
T ss_dssp TBBCTTSSB
T ss_pred eeeccCccc
Confidence 555 34433
No 106
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.63 E-value=1e-16 Score=182.14 Aligned_cols=168 Identities=20% Similarity=0.139 Sum_probs=73.7
Q ss_pred ccEEEeeCCCCCCCCccccccC--ccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCC--ccccccCCCCCcEE
Q 001385 127 LRAVVLTKGVGSGHLSDGIGVL--TRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSA--LPVDLTRLPVLEKL 202 (1088)
Q Consensus 127 L~~L~Ls~n~i~~~~p~~l~~l--~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~--lp~~l~~l~~L~~L 202 (1088)
++.|++++|.+. +..+..+ ++|+.|++++|. +.+..+. +..+++|++|+|++|.++. ++..+..+++|++|
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~-l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSF-MDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCE-ECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCcc-ccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 444455444433 2333333 445555555444 2222222 2244455555555554441 44444444555555
Q ss_pred EccCCCCC-CCchhhcCCCCCcEEEccCC-cCc--ccchhccCCCCCCEEEeccC-CCCCC--cccccCCc-cccEEEec
Q 001385 203 YLDNNKLS-TLPPELGAMKNLKVLIVDNN-MLV--CVPVELRECVGLVELSLEHN-RLVRP--LLDFRAMA-ELKILRLF 274 (1088)
Q Consensus 203 ~L~~N~l~-~lp~~l~~l~~L~~L~Ls~N-~l~--~lp~~l~~l~~L~~L~Ls~N-~l~~~--~~~l~~l~-~L~~L~Ls 274 (1088)
+|++|.++ ..+..+..+++|++|+|++| .++ .++..+.++++|++|++++| .+++. +..+..++ +|++|+|+
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence 55555444 33344444455555555554 344 23444444455555555554 44431 12244444 45555555
Q ss_pred CCC--CC--CCc-cccCCCCCCeEEeeCCC
Q 001385 275 GNP--LE--FLP-EILPLLKLRHLSLANIR 299 (1088)
Q Consensus 275 ~N~--l~--~l~-~l~~l~~L~~L~L~~N~ 299 (1088)
+|. ++ .++ .+..+++|++|++++|.
T Consensus 204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 233 (336)
T 2ast_B 204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSV 233 (336)
T ss_dssp SCGGGSCHHHHHHHHHHCTTCSEEECTTCT
T ss_pred CCcccCCHHHHHHHHhhCCCCCEEeCCCCC
Confidence 542 22 122 22344455555555544
No 107
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.63 E-value=2e-15 Score=160.66 Aligned_cols=136 Identities=23% Similarity=0.405 Sum_probs=82.7
Q ss_pred CCccEEEccCCCCCCccc-cccCCCCCcEEEccCCCCCCC-chhhcCCCCCcEEEccCCcCcccchh-ccCCCCCCEEEe
Q 001385 174 KTVTAVSLCGLGLSALPV-DLTRLPVLEKLYLDNNKLSTL-PPELGAMKNLKVLIVDNNMLVCVPVE-LRECVGLVELSL 250 (1088)
Q Consensus 174 ~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~N~l~~l-p~~l~~l~~L~~L~Ls~N~l~~lp~~-l~~l~~L~~L~L 250 (1088)
++|+.|+|++|.|+.++. .+..+++|++|+|++|+|+.+ |..|..+++|++|+|++|.|+.+|.. +..+++|+.|+|
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 345555555555554443 345555555555555555533 44555666666666666666655543 355666666666
Q ss_pred ccCCCCCCcc-cccCCccccEEEecCCCCCCCc--cccCCCCCCeEEeeCCCCCCCccccch
Q 001385 251 EHNRLVRPLL-DFRAMAELKILRLFGNPLEFLP--EILPLLKLRHLSLANIRIVADENLRSV 309 (1088)
Q Consensus 251 s~N~l~~~~~-~l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~L~~N~l~~~~~l~~l 309 (1088)
++|.++++.+ .|..+++|+.|+|++|.|+.++ .+..+++|++|+|++|++.+...+..+
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l~~l 173 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLKWL 173 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGGHHH
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCccHHH
Confidence 6666666543 4666677777777777776444 366677788888888887776555543
No 108
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.63 E-value=2e-15 Score=160.75 Aligned_cols=133 Identities=20% Similarity=0.294 Sum_probs=73.9
Q ss_pred ccEEEccCCCCCCccc--cccCCCCCcEEEccCCCCCCCch-hhcCCCCCcEEEccCCcCcccch-hccCCCCCCEEEec
Q 001385 176 VTAVSLCGLGLSALPV--DLTRLPVLEKLYLDNNKLSTLPP-ELGAMKNLKVLIVDNNMLVCVPV-ELRECVGLVELSLE 251 (1088)
Q Consensus 176 L~~L~Ls~n~l~~lp~--~l~~l~~L~~L~L~~N~l~~lp~-~l~~l~~L~~L~Ls~N~l~~lp~-~l~~l~~L~~L~Ls 251 (1088)
+++|+|++|.|+.++. .+..+++|++|+|++|+|+.++. .|..+++|++|+|++|.++.++. .+.++++|++|+|+
T Consensus 34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 113 (220)
T 2v70_A 34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLR 113 (220)
T ss_dssp CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECT
T ss_pred CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECC
Confidence 3444444444444321 24445555555555555553332 45555555555555555554433 35555666666666
Q ss_pred cCCCCCCcc-cccCCccccEEEecCCCCCCC-c-cccCCCCCCeEEeeCCCCCCCccccc
Q 001385 252 HNRLVRPLL-DFRAMAELKILRLFGNPLEFL-P-EILPLLKLRHLSLANIRIVADENLRS 308 (1088)
Q Consensus 252 ~N~l~~~~~-~l~~l~~L~~L~Ls~N~l~~l-~-~l~~l~~L~~L~L~~N~l~~~~~l~~ 308 (1088)
+|.++++.+ .|..+++|+.|+|++|.|+.+ + .+..+++|++|+|++|++.+...+..
T Consensus 114 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~ 173 (220)
T 2v70_A 114 SNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLAW 173 (220)
T ss_dssp TSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGGHH
T ss_pred CCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCchHH
Confidence 666655543 456666666666666666633 2 45667777777777777776655544
No 109
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.62 E-value=3.2e-15 Score=159.10 Aligned_cols=148 Identities=20% Similarity=0.293 Sum_probs=125.1
Q ss_pred cEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCc-cccccCCCCCcEEEccC
Q 001385 128 RAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSAL-PVDLTRLPVLEKLYLDN 206 (1088)
Q Consensus 128 ~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~ 206 (1088)
+.++++++.++. +|..+. ++|+.|+|++|. +....+..|..+++|++|+|++|.|+.+ |..+..+++|++|+|++
T Consensus 14 ~~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~-i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLTE-IPTNLP--ETITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCSS-CCSSCC--TTCCEEECCSSC-CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcCc-CCCccC--cCCCEEECCCCc-CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 578888888865 665554 689999999998 6666677888899999999999999966 56788999999999999
Q ss_pred CCCCCCchh-hcCCCCCcEEEccCCcCccc-chhccCCCCCCEEEeccCCCCCCcc-cccCCccccEEEecCCCCC
Q 001385 207 NKLSTLPPE-LGAMKNLKVLIVDNNMLVCV-PVELRECVGLVELSLEHNRLVRPLL-DFRAMAELKILRLFGNPLE 279 (1088)
Q Consensus 207 N~l~~lp~~-l~~l~~L~~L~Ls~N~l~~l-p~~l~~l~~L~~L~Ls~N~l~~~~~-~l~~l~~L~~L~Ls~N~l~ 279 (1088)
|+|+.+|.. |..+++|++|+|++|.|+.+ |..+..+++|+.|+|++|.++++++ .|..+++|+.|+|++|++.
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 999988865 57899999999999999966 4578889999999999999998876 4888999999999999876
No 110
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.62 E-value=1.1e-15 Score=174.75 Aligned_cols=180 Identities=14% Similarity=0.041 Sum_probs=140.6
Q ss_pred CCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccE-EEccCCCCCCcc-ccccCCCCCcEE
Q 001385 125 EPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTA-VSLCGLGLSALP-VDLTRLPVLEKL 202 (1088)
Q Consensus 125 ~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~-L~Ls~n~l~~lp-~~l~~l~~L~~L 202 (1088)
+++++|+|++|+|+...+..|.++++|++|+|++|++.....+..|.++++|++ +.+++|+|+.++ ..+..+++|++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 578999999999987555678999999999999998333344567888888765 667778999875 467889999999
Q ss_pred EccCCCCCCCch-hhcCCCCCcEEEccC-CcCcccch-hccCC-CCCCEEEeccCCCCCCcccccCCccccEEEec-CCC
Q 001385 203 YLDNNKLSTLPP-ELGAMKNLKVLIVDN-NMLVCVPV-ELREC-VGLVELSLEHNRLVRPLLDFRAMAELKILRLF-GNP 277 (1088)
Q Consensus 203 ~L~~N~l~~lp~-~l~~l~~L~~L~Ls~-N~l~~lp~-~l~~l-~~L~~L~Ls~N~l~~~~~~l~~l~~L~~L~Ls-~N~ 277 (1088)
++++|+++.+|. .+....++..|++.+ |.+..++. .+..+ ..|+.|+|++|+|+.+++......+|+.|+++ +|.
T Consensus 110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~ 189 (350)
T 4ay9_X 110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNN 189 (350)
T ss_dssp EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTT
T ss_pred cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCc
Confidence 999999987764 445667788888865 57777765 34554 46888999999998877766667789999987 477
Q ss_pred CCCCc--cccCCCCCCeEEeeCCCCCCCc
Q 001385 278 LEFLP--EILPLLKLRHLSLANIRIVADE 304 (1088)
Q Consensus 278 l~~l~--~l~~l~~L~~L~L~~N~l~~~~ 304 (1088)
++.+| .+..+++|+.|+|++|+|+.++
T Consensus 190 l~~i~~~~f~~l~~L~~LdLs~N~l~~lp 218 (350)
T 4ay9_X 190 LEELPNDVFHGASGPVILDISRTRIHSLP 218 (350)
T ss_dssp CCCCCTTTTTTEECCSEEECTTSCCCCCC
T ss_pred ccCCCHHHhccCcccchhhcCCCCcCccC
Confidence 88776 3678899999999999988754
No 111
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.61 E-value=6.8e-18 Score=204.91 Aligned_cols=197 Identities=17% Similarity=0.104 Sum_probs=155.1
Q ss_pred cCCCCCccEEEeeCCCCCCCCccccccCccccEEeCcCCCC------------CCCCccccccCCCCccEEE-ccCCCCC
Q 001385 121 VKRREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGP------------GNNMGSGFCDHWKTVTAVS-LCGLGLS 187 (1088)
Q Consensus 121 ~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l------------~~~~~~~~~~~l~~L~~L~-Ls~n~l~ 187 (1088)
+..+++|+.|+|++|.+. .+|..+++|++|+.|++++|.. ..+..|..+..+++|+.|+ ++.|.+.
T Consensus 345 ~~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~ 423 (567)
T 1dce_A 345 SATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 423 (567)
T ss_dssp CSTTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred cccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence 467889999999999986 5899999999999999977630 2345566778888888888 6666544
Q ss_pred Cccc------cccC--CCCCcEEEccCCCCCCCchhhcCCCCCcEEEccCCcCcccchhccCCCCCCEEEeccCCCCCCc
Q 001385 188 ALPV------DLTR--LPVLEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVELRECVGLVELSLEHNRLVRPL 259 (1088)
Q Consensus 188 ~lp~------~l~~--l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~~~ 259 (1088)
.++. .+.. ...|++|+|++|.|+.+|. +..+++|+.|+|++|.|+.+|..++++++|+.|+|++|.|++++
T Consensus 424 ~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp 502 (567)
T 1dce_A 424 DLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 502 (567)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG
T ss_pred hhhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc
Confidence 3322 1111 1258999999999999986 99999999999999999999999999999999999999999875
Q ss_pred ccccCCccccEEEecCCCCCCC--c-cccCCCCCCeEEeeCCCCCCCcc-ccchhhhhcCcCCcccc
Q 001385 260 LDFRAMAELKILRLFGNPLEFL--P-EILPLLKLRHLSLANIRIVADEN-LRSVNVQIEMENNSYFG 322 (1088)
Q Consensus 260 ~~l~~l~~L~~L~Ls~N~l~~l--~-~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~~~~l~~l~~l~ 322 (1088)
.++.+++|+.|+|++|.|+.+ | .+..+++|+.|+|++|.+++.+. ...+ ...+++|+.|+
T Consensus 503 -~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l--~~~lp~L~~L~ 566 (567)
T 1dce_A 503 -GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERL--AEMLPSVSSIL 566 (567)
T ss_dssp -GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHH--HHHCTTCSEEE
T ss_pred -ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHH--HHHCcccCccC
Confidence 889999999999999999844 4 78899999999999999987533 2221 12366666654
No 112
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.61 E-value=1.8e-16 Score=182.30 Aligned_cols=234 Identities=15% Similarity=0.060 Sum_probs=171.7
Q ss_pred CCceEEeccCCCCCcccccccccccchhhcCCCC-CccEEEeeCCCCCCCCccccccC-----ccccEEeCcCCCCCCCC
Q 001385 92 EDTVVVELAPQEEGDVATDAANVGVEMRVVKRRE-PLRAVVLTKGVGSGHLSDGIGVL-----TRLMRSDLSTSGPGNNM 165 (1088)
Q Consensus 92 ~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~p~~l~~l-----~~L~~L~Ls~N~l~~~~ 165 (1088)
.....++++.......+ ...-...+..++ +|++|+|++|.+++..+..+..+ ++|++|+|++|. +...
T Consensus 22 ~~L~~L~Ls~n~l~~~~-----~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~ 95 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSIS-----TVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF-LSYK 95 (362)
T ss_dssp TTCCEEECTTSCGGGSC-----HHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGS
T ss_pred CCceEEEccCCCCChHH-----HHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc-CChH
Confidence 33457888665542211 111126778888 99999999999988777777765 999999999998 5554
Q ss_pred cccc----ccCC-CCccEEEccCCCCCCccc-----cccC-CCCCcEEEccCCCCC-----CCchhhcCCC-CCcEEEcc
Q 001385 166 GSGF----CDHW-KTVTAVSLCGLGLSALPV-----DLTR-LPVLEKLYLDNNKLS-----TLPPELGAMK-NLKVLIVD 228 (1088)
Q Consensus 166 ~~~~----~~~l-~~L~~L~Ls~n~l~~lp~-----~l~~-l~~L~~L~L~~N~l~-----~lp~~l~~l~-~L~~L~Ls 228 (1088)
.+.. +..+ ++|++|+|++|.|+..+. .+.. .++|++|+|++|.++ .++..+..++ +|++|+|+
T Consensus 96 ~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls 175 (362)
T 3goz_A 96 SSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLR 175 (362)
T ss_dssp CHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECT
T ss_pred HHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeec
Confidence 4443 4444 899999999999996553 2444 369999999999998 4455566666 99999999
Q ss_pred CCcCcccc-----hhccCC-CCCCEEEeccCCCCCC-----cccccC-CccccEEEecCCCCCCCc------cccCCCCC
Q 001385 229 NNMLVCVP-----VELREC-VGLVELSLEHNRLVRP-----LLDFRA-MAELKILRLFGNPLEFLP------EILPLLKL 290 (1088)
Q Consensus 229 ~N~l~~lp-----~~l~~l-~~L~~L~Ls~N~l~~~-----~~~l~~-l~~L~~L~Ls~N~l~~l~------~l~~l~~L 290 (1088)
+|.++... ..+..+ ++|++|+|++|.++.. ...+.. .++|+.|+|++|.++..+ .+..+++|
T Consensus 176 ~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L 255 (362)
T 3goz_A 176 GNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHL 255 (362)
T ss_dssp TSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTC
T ss_pred CCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCc
Confidence 99998433 345566 5999999999999873 334555 459999999999998543 24678999
Q ss_pred CeEEeeCCCCCCCcc--ccchh-hhhcCcCCccccccccchhhh
Q 001385 291 RHLSLANIRIVADEN--LRSVN-VQIEMENNSYFGASRHKLSAF 331 (1088)
Q Consensus 291 ~~L~L~~N~l~~~~~--l~~l~-~~~~l~~l~~l~l~~n~l~~~ 331 (1088)
++|+|++|.+..... +..+. ....+++|+.+++++|.+...
T Consensus 256 ~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 256 QTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp SEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred cEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 999999999665421 21111 122477889999999998764
No 113
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.60 E-value=6.2e-15 Score=157.94 Aligned_cols=135 Identities=21% Similarity=0.229 Sum_probs=124.1
Q ss_pred CCCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCcccc-ccCCCCCcEE
Q 001385 124 REPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVD-LTRLPVLEKL 202 (1088)
Q Consensus 124 l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L 202 (1088)
.++|+.|+|++|.|++..|..|.++++|++|+|++|+ +....+..|..+++|++|+|++|.|+.++.. +..+++|++|
T Consensus 39 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L 117 (229)
T 3e6j_A 39 PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKEL 117 (229)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeE
Confidence 3789999999999999888999999999999999999 6666777889999999999999999988865 6789999999
Q ss_pred EccCCCCCCCchhhcCCCCCcEEEccCCcCcccch-hccCCCCCCEEEeccCCCCCCc
Q 001385 203 YLDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPV-ELRECVGLVELSLEHNRLVRPL 259 (1088)
Q Consensus 203 ~L~~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~lp~-~l~~l~~L~~L~Ls~N~l~~~~ 259 (1088)
+|++|+|+.+|..+..+++|++|+|++|+|+.++. .+..+++|+.|+|++|.+....
T Consensus 118 ~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 118 FMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp ECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred eccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 99999999999999999999999999999998875 5789999999999999998654
No 114
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.60 E-value=6.1e-15 Score=156.95 Aligned_cols=148 Identities=16% Similarity=0.251 Sum_probs=123.2
Q ss_pred cEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCc-cccccCCCCccEEEccCCCCCCccc-cccCCCCCcEEEcc
Q 001385 128 RAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMG-SGFCDHWKTVTAVSLCGLGLSALPV-DLTRLPVLEKLYLD 205 (1088)
Q Consensus 128 ~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~ 205 (1088)
+.+++++|.++. +|..+. ..+++|+|++|. +.... ...|..+++|++|+|++|.|+.++. .+..+++|++|+|+
T Consensus 14 ~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHIP--QYTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCSS-CCSCCC--TTCSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCccc-CccCCC--CCCCEEEcCCCc-CCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 588999998876 666553 457899999998 45543 3567889999999999999997775 68899999999999
Q ss_pred CCCCCCCch-hhcCCCCCcEEEccCCcCccc-chhccCCCCCCEEEeccCCCCCCcc-cccCCccccEEEecCCCCC
Q 001385 206 NNKLSTLPP-ELGAMKNLKVLIVDNNMLVCV-PVELRECVGLVELSLEHNRLVRPLL-DFRAMAELKILRLFGNPLE 279 (1088)
Q Consensus 206 ~N~l~~lp~-~l~~l~~L~~L~Ls~N~l~~l-p~~l~~l~~L~~L~Ls~N~l~~~~~-~l~~l~~L~~L~Ls~N~l~ 279 (1088)
+|+++.++. .|..+++|++|+|++|.|+.+ |..+..+++|+.|+|++|+++++.+ .|..+++|+.|+|++|.+.
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 999997664 478899999999999999966 5678899999999999999998854 6888999999999999887
No 115
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.60 E-value=2.1e-15 Score=173.28 Aligned_cols=154 Identities=26% Similarity=0.225 Sum_probs=136.2
Q ss_pred CCccEEEeeCCCCCCCCccccc-cCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCccc-cccCCCCCcEE
Q 001385 125 EPLRAVVLTKGVGSGHLSDGIG-VLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPV-DLTRLPVLEKL 202 (1088)
Q Consensus 125 ~~L~~L~Ls~n~i~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L 202 (1088)
..++.|+|++|+|++..+..+. ++++|+.|+|++|+ +....+..|..+++|++|+|++|+|+.++. .+..+++|++|
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 117 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVL 117 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEE
Confidence 4689999999999987777777 99999999999999 677777889999999999999999998876 57899999999
Q ss_pred EccCCCCCCC-chhhcCCCCCcEEEccCCcCcccchhc----cCCCCCCEEEeccCCCCCCcc-cccCCcc--ccEEEec
Q 001385 203 YLDNNKLSTL-PPELGAMKNLKVLIVDNNMLVCVPVEL----RECVGLVELSLEHNRLVRPLL-DFRAMAE--LKILRLF 274 (1088)
Q Consensus 203 ~L~~N~l~~l-p~~l~~l~~L~~L~Ls~N~l~~lp~~l----~~l~~L~~L~Ls~N~l~~~~~-~l~~l~~--L~~L~Ls 274 (1088)
+|++|+|+.+ |..|..+++|+.|+|++|.|+.+|..+ ..+++|+.|+|++|+|+.++. .+..++. |+.|+|+
T Consensus 118 ~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~ 197 (361)
T 2xot_A 118 LLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLH 197 (361)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECC
T ss_pred ECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEec
Confidence 9999999955 578899999999999999999998765 579999999999999998874 5777776 4899999
Q ss_pred CCCCC
Q 001385 275 GNPLE 279 (1088)
Q Consensus 275 ~N~l~ 279 (1088)
+|.+.
T Consensus 198 ~N~~~ 202 (361)
T 2xot_A 198 NNPLE 202 (361)
T ss_dssp SSCEE
T ss_pred CCCcc
Confidence 99886
No 116
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.58 E-value=9.5e-15 Score=167.07 Aligned_cols=221 Identities=12% Similarity=0.068 Sum_probs=171.0
Q ss_pred CCceEEeccCCCCCcccccccccccchhhcCCCCCccEEEeeCCCCCCCCc-cccccCccccE-EeCcCCCCCCCCcccc
Q 001385 92 EDTVVVELAPQEEGDVATDAANVGVEMRVVKRREPLRAVVLTKGVGSGHLS-DGIGVLTRLMR-SDLSTSGPGNNMGSGF 169 (1088)
Q Consensus 92 ~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p-~~l~~l~~L~~-L~Ls~N~l~~~~~~~~ 169 (1088)
.....++++.+.. ..+....|.++++|++|+|++|.+.+.+| ..|.++++|+. +.+.+|+ +....+..
T Consensus 30 ~~l~~L~Ls~N~i---------~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~-l~~l~~~~ 99 (350)
T 4ay9_X 30 RNAIELRFVLTKL---------RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN-LLYINPEA 99 (350)
T ss_dssp TTCSEEEEESCCC---------SEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT-CCEECTTS
T ss_pred CCCCEEEccCCcC---------CCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc-ccccCchh
Confidence 3455677755443 23454679999999999999999877665 56889988876 5667787 67777889
Q ss_pred ccCCCCccEEEccCCCCCCccc-cccCCCCCcEEEccC-CCCCCCch-hhcCC-CCCcEEEccCCcCcccchhccCCCCC
Q 001385 170 CDHWKTVTAVSLCGLGLSALPV-DLTRLPVLEKLYLDN-NKLSTLPP-ELGAM-KNLKVLIVDNNMLVCVPVELRECVGL 245 (1088)
Q Consensus 170 ~~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~-N~l~~lp~-~l~~l-~~L~~L~Ls~N~l~~lp~~l~~l~~L 245 (1088)
|..+++|++|++++|+|+.+|. .+....++..|++.+ |++..++. .+..+ ..|+.|+|++|+|+.+|.......+|
T Consensus 100 f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L 179 (350)
T 4ay9_X 100 FQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQL 179 (350)
T ss_dssp BCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEE
T ss_pred hhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccch
Confidence 9999999999999999998875 345667888999865 67877764 45555 46999999999999999888888899
Q ss_pred CEEEecc-CCCCCCcc-cccCCccccEEEecCCCCCCCccccCCCCCCeEEeeC-CCCCCCccccchhhhhcCcCCcccc
Q 001385 246 VELSLEH-NRLVRPLL-DFRAMAELKILRLFGNPLEFLPEILPLLKLRHLSLAN-IRIVADENLRSVNVQIEMENNSYFG 322 (1088)
Q Consensus 246 ~~L~Ls~-N~l~~~~~-~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~L~~-N~l~~~~~l~~l~~~~~l~~l~~l~ 322 (1088)
+.|++.+ |.++.+++ .|..+++|+.|+|++|+|+.+|. ..+.+|+.|.+.+ +.++.++.+.. +++|+.++
T Consensus 180 ~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~-~~~~~L~~L~~l~~~~l~~lP~l~~------l~~L~~l~ 252 (350)
T 4ay9_X 180 DELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS-YGLENLKKLRARSTYNLKKLPTLEK------LVALMEAS 252 (350)
T ss_dssp EEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS-SSCTTCCEEECTTCTTCCCCCCTTT------CCSCCEEE
T ss_pred hHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh-hhhccchHhhhccCCCcCcCCCchh------CcChhhCc
Confidence 9999974 77888775 58999999999999999998875 3366777777544 34555555543 77888888
Q ss_pred ccccchh
Q 001385 323 ASRHKLS 329 (1088)
Q Consensus 323 l~~n~l~ 329 (1088)
+.++.-.
T Consensus 253 l~~~~~c 259 (350)
T 4ay9_X 253 LTYPSHC 259 (350)
T ss_dssp CSCHHHH
T ss_pred CCCCccc
Confidence 8765543
No 117
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.57 E-value=6.6e-15 Score=149.50 Aligned_cols=134 Identities=18% Similarity=0.126 Sum_probs=94.3
Q ss_pred CCCCccEEEeeCCCCC-CCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCC-ccccccCCCCCc
Q 001385 123 RREPLRAVVLTKGVGS-GHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSA-LPVDLTRLPVLE 200 (1088)
Q Consensus 123 ~l~~L~~L~Ls~n~i~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~ 200 (1088)
..++|+.|+|++|.++ +.+|..+..+++|++|+|++|. +... ..+..+++|++|+|++|.++. +|..+..+++|+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 3467888888888876 5577777777888888888877 4433 566677777777777777775 555555677777
Q ss_pred EEEccCCCCCCCc--hhhcCCCCCcEEEccCCcCcccch----hccCCCCCCEEEeccCCCCCCc
Q 001385 201 KLYLDNNKLSTLP--PELGAMKNLKVLIVDNNMLVCVPV----ELRECVGLVELSLEHNRLVRPL 259 (1088)
Q Consensus 201 ~L~L~~N~l~~lp--~~l~~l~~L~~L~Ls~N~l~~lp~----~l~~l~~L~~L~Ls~N~l~~~~ 259 (1088)
+|+|++|+++.+| ..+..+++|++|++++|.++.+|. .+..+++|+.|++++|.+...+
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 7777777777665 566777777777777777776665 5666777777777777665544
No 118
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.55 E-value=9.2e-15 Score=148.41 Aligned_cols=134 Identities=21% Similarity=0.238 Sum_probs=96.5
Q ss_pred CccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCccccccCCCCCcEEEccCCCCCC-CchhhcCCCCCcEEE
Q 001385 148 LTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPVLEKLYLDNNKLST-LPPELGAMKNLKVLI 226 (1088)
Q Consensus 148 l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~N~l~~-lp~~l~~l~~L~~L~ 226 (1088)
.++|+.|+|++|.+..+.+|..+..+++|++|+|++|.|+.+ ..+..+++|++|+|++|+++. +|..+..+++|++|+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 367788888888732245666677778888888888887776 667777778888888887775 666666677777777
Q ss_pred ccCCcCcccc--hhccCCCCCCEEEeccCCCCCCcc----cccCCccccEEEecCCCCCCCc
Q 001385 227 VDNNMLVCVP--VELRECVGLVELSLEHNRLVRPLL----DFRAMAELKILRLFGNPLEFLP 282 (1088)
Q Consensus 227 Ls~N~l~~lp--~~l~~l~~L~~L~Ls~N~l~~~~~----~l~~l~~L~~L~Ls~N~l~~l~ 282 (1088)
|++|.++.+| ..+..+++|+.|++++|.+++.++ .+..+++|+.|++++|.+..+|
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 7777777665 567777777777777777776664 4667777777777777666444
No 119
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.54 E-value=1.5e-15 Score=189.97 Aligned_cols=176 Identities=22% Similarity=0.257 Sum_probs=106.1
Q ss_pred CCCccEEEeeCCCCCCCCccccccCccccEE-----eCcCCCCCCCCccccccCCCCccEEEccCCCCCCccccccCCCC
Q 001385 124 REPLRAVVLTKGVGSGHLSDGIGVLTRLMRS-----DLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPV 198 (1088)
Q Consensus 124 l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L-----~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~ 198 (1088)
.++++.|+|.+|.+.. .+..+.....|+.+ +++.|. ....+..+..+.+|+.|+|++|.|..+|..++.+++
T Consensus 172 ~~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~--~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~ 248 (727)
T 4b8c_D 172 TPLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENR--MVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDF 248 (727)
T ss_dssp -----------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCS
T ss_pred CCccceEEeeCCCCCc-chhhHhhcCccCcccccCccccccc--eecChhhhccCCCCcEEECCCCCCCCCChhhcCCCC
Confidence 3567788888887765 34333222233332 233333 124566778888888899988888888888888888
Q ss_pred CcEEEccCCCCCCCchhhcCCCCCcEEEccCCcCcccchhccCCCCCCEEEeccCCCCCCcccccCCccccEEEecCCCC
Q 001385 199 LEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVELRECVGLVELSLEHNRLVRPLLDFRAMAELKILRLFGNPL 278 (1088)
Q Consensus 199 L~~L~L~~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~~~~~l~~l~~L~~L~Ls~N~l 278 (1088)
|++|+|++|.|+.+|..|.+|++|++|+|++|.|+.+|..+++|++|++|+|++|.|+.++..|+.|++|+.|+|++|.|
T Consensus 249 L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 249 LTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp CSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCC
T ss_pred CCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCcc
Confidence 88899988888888888888888899999888888888888888888899998888887777788888888899988888
Q ss_pred C-CCcc-ccCC-CCCCeEEeeCCCCCC
Q 001385 279 E-FLPE-ILPL-LKLRHLSLANIRIVA 302 (1088)
Q Consensus 279 ~-~l~~-l~~l-~~L~~L~L~~N~l~~ 302 (1088)
+ .+|. +..+ ..+..|+|++|.++.
T Consensus 329 ~~~~p~~~~~~~~~~~~l~l~~N~l~~ 355 (727)
T 4b8c_D 329 EKQFLKILTEKSVTGLIFYLRDNRPEI 355 (727)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred CCCChHHHhhcchhhhHHhhccCcccC
Confidence 8 3332 2221 112246778888775
No 120
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.51 E-value=2.8e-15 Score=187.59 Aligned_cols=116 Identities=28% Similarity=0.290 Sum_probs=54.3
Q ss_pred ccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCccccccCCCCCcEEEccCCCCCCCchhhcCCCC
Q 001385 142 SDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPVLEKLYLDNNKLSTLPPELGAMKN 221 (1088)
Q Consensus 142 p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~N~l~~lp~~l~~l~~ 221 (1088)
++.+..+++|+.|+|++|. +. .++..+..+++|++|+|++|.|+.+|..|..|++|++|+|++|+|+.+|..|..|++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~-l~-~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~ 294 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQ-IF-NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQ 294 (727)
T ss_dssp -----CCCCCCEEECTTSC-CS-CCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTT
T ss_pred hhhhccCCCCcEEECCCCC-CC-CCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCC
Confidence 3444444555555555554 22 223333344555555555555555554455555555555555555545544555555
Q ss_pred CcEEEccCCcCcccchhccCCCCCCEEEeccCCCCCCc
Q 001385 222 LKVLIVDNNMLVCVPVELRECVGLVELSLEHNRLVRPL 259 (1088)
Q Consensus 222 L~~L~Ls~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~~~ 259 (1088)
|++|+|++|.|+.+|..|++|++|+.|+|++|.|++.+
T Consensus 295 L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~ 332 (727)
T 4b8c_D 295 LKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQF 332 (727)
T ss_dssp CSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHH
T ss_pred CCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCC
Confidence 55555555555555544555555555555555554433
No 121
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.51 E-value=7.8e-16 Score=186.83 Aligned_cols=173 Identities=22% Similarity=0.218 Sum_probs=143.1
Q ss_pred hhcCCCCCccEEEeeCCC-------------CCCCCccccccCccccEEe-CcCCCCCCCCccc------cccC--CCCc
Q 001385 119 RVVKRREPLRAVVLTKGV-------------GSGHLSDGIGVLTRLMRSD-LSTSGPGNNMGSG------FCDH--WKTV 176 (1088)
Q Consensus 119 ~~~~~l~~L~~L~Ls~n~-------------i~~~~p~~l~~l~~L~~L~-Ls~N~l~~~~~~~------~~~~--l~~L 176 (1088)
..+.++++|+.|++++|. +.+..|..++++++|+.|+ ++.|. +.. ++. .+.. ...|
T Consensus 366 ~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~-~~~-L~~l~l~~n~i~~l~~~~L 443 (567)
T 1dce_A 366 SELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY-LDD-LRSKFLLENSVLKMEYADV 443 (567)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHH-HHH-HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcc-cch-hhhhhhhcccccccCccCc
Confidence 567778889999887664 5566778889999999998 66553 111 000 0111 1369
Q ss_pred cEEEccCCCCCCccccccCCCCCcEEEccCCCCCCCchhhcCCCCCcEEEccCCcCcccchhccCCCCCCEEEeccCCCC
Q 001385 177 TAVSLCGLGLSALPVDLTRLPVLEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVELRECVGLVELSLEHNRLV 256 (1088)
Q Consensus 177 ~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~Ls~N~l~ 256 (1088)
++|+|++|.|+.+|. +..+++|++|+|++|+|+.+|..++.+++|+.|+|++|.|+.+| .++++++|+.|+|++|.|+
T Consensus 444 ~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~ 521 (567)
T 1dce_A 444 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQ 521 (567)
T ss_dssp SEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCC
T ss_pred eEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCCC
Confidence 999999999999997 99999999999999999999999999999999999999999998 8999999999999999999
Q ss_pred CC--cccccCCccccEEEecCCCCCCCc-c----ccCCCCCCeEEe
Q 001385 257 RP--LLDFRAMAELKILRLFGNPLEFLP-E----ILPLLKLRHLSL 295 (1088)
Q Consensus 257 ~~--~~~l~~l~~L~~L~Ls~N~l~~l~-~----l~~l~~L~~L~L 295 (1088)
+. +..|..+++|+.|+|++|+++.++ . +..+++|+.|++
T Consensus 522 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 522 QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 98 568999999999999999998544 2 234889999875
No 122
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.50 E-value=9.5e-14 Score=144.49 Aligned_cols=131 Identities=28% Similarity=0.443 Sum_probs=111.5
Q ss_pred cEEEccCCCCCCccccccCCCCCcEEEccCCCCCCCchhhcCCCCCcEEEccCCcCcccch-hccCCCCCCEEEeccCCC
Q 001385 177 TAVSLCGLGLSALPVDLTRLPVLEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPV-ELRECVGLVELSLEHNRL 255 (1088)
Q Consensus 177 ~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~lp~-~l~~l~~L~~L~Ls~N~l 255 (1088)
+++++++|.|+.+|..+. .+|++|+|++|+|+.+|..|..+++|++|+|++|.|+.++. .|.++++|++|+|++|.|
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 678888888888887654 58899999999999888888899999999999999997764 588899999999999999
Q ss_pred CCCcc-cccCCccccEEEecCCCCCCCc--cccCCCCCCeEEeeCCCCCCCccccch
Q 001385 256 VRPLL-DFRAMAELKILRLFGNPLEFLP--EILPLLKLRHLSLANIRIVADENLRSV 309 (1088)
Q Consensus 256 ~~~~~-~l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~L~~N~l~~~~~l~~l 309 (1088)
+.+++ .|..+++|+.|+|++|.|+.++ .+..+++|+.|+|++|++.+...+..+
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~~l 147 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWL 147 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGHHH
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcCHHH
Confidence 88876 5889999999999999999655 377899999999999999887666553
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.50 E-value=2.3e-14 Score=142.36 Aligned_cols=124 Identities=20% Similarity=0.175 Sum_probs=68.7
Q ss_pred CCccEEEeeCCCCC-CCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCC-ccccccCCCCCcEE
Q 001385 125 EPLRAVVLTKGVGS-GHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSA-LPVDLTRLPVLEKL 202 (1088)
Q Consensus 125 ~~L~~L~Ls~n~i~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L 202 (1088)
++|+.|++++|.++ +.+|..+..+++|++|+|++|. +... ..+..+++|++|+|++|.++. +|..+..+++|++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-CCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-CCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 55666666666665 4455555666666666666665 3332 445555566666666666554 44444445555555
Q ss_pred EccCCCCCCCc--hhhcCCCCCcEEEccCCcCcccch----hccCCCCCCEEEec
Q 001385 203 YLDNNKLSTLP--PELGAMKNLKVLIVDNNMLVCVPV----ELRECVGLVELSLE 251 (1088)
Q Consensus 203 ~L~~N~l~~lp--~~l~~l~~L~~L~Ls~N~l~~lp~----~l~~l~~L~~L~Ls 251 (1088)
++++|+++.++ ..+..+++|++|++++|.++.+|. .+..+++|+.|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 55555555443 445555555555555555554443 34555555555443
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.50 E-value=3.5e-14 Score=140.98 Aligned_cols=126 Identities=21% Similarity=0.262 Sum_probs=86.4
Q ss_pred CccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCccccccCCCCCcEEEccCCCCCC-CchhhcCCCCCcEEE
Q 001385 148 LTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPVLEKLYLDNNKLST-LPPELGAMKNLKVLI 226 (1088)
Q Consensus 148 l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~N~l~~-lp~~l~~l~~L~~L~ 226 (1088)
.++|+.|++++|.+..+.++..+..+++|++|+|++|.++.+ ..+..+++|++|+|++|.++. +|..+..+++|++|+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 356777777777732245666667777777777777777766 566777777777777777775 666666677777777
Q ss_pred ccCCcCcccc--hhccCCCCCCEEEeccCCCCCCcc----cccCCccccEEEec
Q 001385 227 VDNNMLVCVP--VELRECVGLVELSLEHNRLVRPLL----DFRAMAELKILRLF 274 (1088)
Q Consensus 227 Ls~N~l~~lp--~~l~~l~~L~~L~Ls~N~l~~~~~----~l~~l~~L~~L~Ls 274 (1088)
+++|.++.++ ..+..+++|++|++++|.+++.++ .+..+++|+.|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 7777777554 566777777777777777766654 36666667766654
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.49 E-value=1.2e-13 Score=143.58 Aligned_cols=130 Identities=26% Similarity=0.394 Sum_probs=106.4
Q ss_pred cEEEccCCCCCCccccccCCCCCcEEEccCCCCCCCchh--hcCCCCCcEEEccCCcCccc-chhccCCCCCCEEEeccC
Q 001385 177 TAVSLCGLGLSALPVDLTRLPVLEKLYLDNNKLSTLPPE--LGAMKNLKVLIVDNNMLVCV-PVELRECVGLVELSLEHN 253 (1088)
Q Consensus 177 ~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~N~l~~lp~~--l~~l~~L~~L~Ls~N~l~~l-p~~l~~l~~L~~L~Ls~N 253 (1088)
++|++++|.++.+|..+.. +|++|+|++|+++.++.. +..+++|++|+|++|.|+.+ |..+.++++|++|+|++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 6788888888888876654 888899999888877653 78888999999999988865 677888899999999999
Q ss_pred CCCCCcc-cccCCccccEEEecCCCCCCC-c-cccCCCCCCeEEeeCCCCCCCccccc
Q 001385 254 RLVRPLL-DFRAMAELKILRLFGNPLEFL-P-EILPLLKLRHLSLANIRIVADENLRS 308 (1088)
Q Consensus 254 ~l~~~~~-~l~~l~~L~~L~Ls~N~l~~l-~-~l~~l~~L~~L~L~~N~l~~~~~l~~ 308 (1088)
+|++.++ .|..+++|++|+|++|+|+.+ + .+..+++|++|+|++|.+.+...+..
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~ 146 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW 146 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHH
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchH
Confidence 9988775 488889999999999999833 3 57788999999999999988655543
No 126
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.46 E-value=8.5e-14 Score=142.52 Aligned_cols=133 Identities=17% Similarity=0.136 Sum_probs=92.9
Q ss_pred hcCCCCCccEEEeeCCCCCCCCccccccCc-cccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCccccc-cCCC
Q 001385 120 VVKRREPLRAVVLTKGVGSGHLSDGIGVLT-RLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDL-TRLP 197 (1088)
Q Consensus 120 ~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l-~~l~ 197 (1088)
.+..+.+|+.|++++|.++. ++. +..+. +|++|+|++|. +... ..+..+++|++|+|++|.|+.+|..+ ..++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~-l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 88 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNE-IRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALP 88 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSC-CCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred hcCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCC-CCcc--cccccCCCCCEEECCCCcccccCcchhhcCC
Confidence 45567778888888887775 443 44443 78888888877 3333 46667777777777777777776544 6777
Q ss_pred CCcEEEccCCCCCCCch--hhcCCCCCcEEEccCCcCcccchh----ccCCCCCCEEEeccCCCCC
Q 001385 198 VLEKLYLDNNKLSTLPP--ELGAMKNLKVLIVDNNMLVCVPVE----LRECVGLVELSLEHNRLVR 257 (1088)
Q Consensus 198 ~L~~L~L~~N~l~~lp~--~l~~l~~L~~L~Ls~N~l~~lp~~----l~~l~~L~~L~Ls~N~l~~ 257 (1088)
+|++|+|++|+++.+|. .+..+++|+.|++++|.++.+|.. +..+++|+.|++++|.+..
T Consensus 89 ~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 89 DLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp TCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 77777777777777765 667777777777777777766664 6677777777777776543
No 127
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.45 E-value=7.1e-14 Score=143.11 Aligned_cols=109 Identities=21% Similarity=0.185 Sum_probs=45.7
Q ss_pred cccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCccccccCCCCCcEEEccCCCCCCCchhh-cCCCCCc
Q 001385 145 IGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPVLEKLYLDNNKLSTLPPEL-GAMKNLK 223 (1088)
Q Consensus 145 l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~N~l~~lp~~l-~~l~~L~ 223 (1088)
+.++.+|+.|+|++|. +.. ++......++|++|+|++|.|+.+ ..+..+++|++|+|++|+++.+|..+ ..+++|+
T Consensus 15 ~~~~~~L~~L~l~~n~-l~~-i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYK-IPV-IENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp EECTTSCEEEECTTSC-CCS-CCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred cCCcCCceEEEeeCCC-Cch-hHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 3344455555555554 222 122221122444444444444444 33444444444444444444433222 4444444
Q ss_pred EEEccCCcCcccch--hccCCCCCCEEEeccCCCC
Q 001385 224 VLIVDNNMLVCVPV--ELRECVGLVELSLEHNRLV 256 (1088)
Q Consensus 224 ~L~Ls~N~l~~lp~--~l~~l~~L~~L~Ls~N~l~ 256 (1088)
+|+|++|.|+.+|. .+..+++|+.|++++|.++
T Consensus 92 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 92 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred EEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC
Confidence 44444444444433 3344444444444444443
No 128
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.43 E-value=4.6e-14 Score=173.15 Aligned_cols=174 Identities=16% Similarity=0.116 Sum_probs=89.9
Q ss_pred hcCCCCCccEEEeeCCCCCC----CCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEcc-------------
Q 001385 120 VVKRREPLRAVVLTKGVGSG----HLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLC------------- 182 (1088)
Q Consensus 120 ~~~~l~~L~~L~Ls~n~i~~----~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls------------- 182 (1088)
.+..+++|+.|+|++|.+++ .++..+.++++|+.|+|++|. +. ..+..+..+++|++|+++
T Consensus 187 ~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 264 (592)
T 3ogk_B 187 LAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-IL-ELVGFFKAAANLEEFCGGSLNEDIGMPEKYM 264 (592)
T ss_dssp HHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GG-GGHHHHHHCTTCCEEEECBCCCCTTCTTSSS
T ss_pred HHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HH-HHHHHHhhhhHHHhhcccccccccchHHHHH
Confidence 44567778888888877762 233445567778888887775 22 233444445555555554
Q ss_pred --------------CCCCCCccccccCCCCCcEEEccCCCCC--CCchhhcCCCCCcEEEccCCcCc--ccchhccCCCC
Q 001385 183 --------------GLGLSALPVDLTRLPVLEKLYLDNNKLS--TLPPELGAMKNLKVLIVDNNMLV--CVPVELRECVG 244 (1088)
Q Consensus 183 --------------~n~l~~lp~~l~~l~~L~~L~L~~N~l~--~lp~~l~~l~~L~~L~Ls~N~l~--~lp~~l~~l~~ 244 (1088)
++....+|..+..+++|++|+|++|.++ .++..+..+++|++|+++ |.+. .++..+..+++
T Consensus 265 ~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~ 343 (592)
T 3ogk_B 265 NLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQ 343 (592)
T ss_dssp CCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTT
T ss_pred HhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCC
Confidence 4333344444455555666666655544 222234555555555555 3332 23333344555
Q ss_pred CCEEEecc-----------CCCCCCc-cc-ccCCccccEEEecCCCCC--CCccccC-CCCCCeEEee
Q 001385 245 LVELSLEH-----------NRLVRPL-LD-FRAMAELKILRLFGNPLE--FLPEILP-LLKLRHLSLA 296 (1088)
Q Consensus 245 L~~L~Ls~-----------N~l~~~~-~~-l~~l~~L~~L~Ls~N~l~--~l~~l~~-l~~L~~L~L~ 296 (1088)
|++|++++ |.++... .. +..+++|+.|+++.|.++ .+..+.. +++|++|+++
T Consensus 344 L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~ 411 (592)
T 3ogk_B 344 LKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLV 411 (592)
T ss_dssp CCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEE
T ss_pred CCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEe
Confidence 66666652 3333211 11 233556666666555555 2223332 5566666664
No 129
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.43 E-value=6.9e-16 Score=161.40 Aligned_cols=133 Identities=21% Similarity=0.177 Sum_probs=75.9
Q ss_pred cCCCCCccEEEeeCCCCCCCCcc------ccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCcccccc
Q 001385 121 VKRREPLRAVVLTKGVGSGHLSD------GIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLT 194 (1088)
Q Consensus 121 ~~~l~~L~~L~Ls~n~i~~~~p~------~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~ 194 (1088)
+.....++.++++.+.+.+.+|. .+..+++|++|+|++|. +.. ++ .+..+++|++|+|++|.++.+|..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~-l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNN-IEK-IS-SLSGMENLRILSLGRNLIKKIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEE-ESC-CC-CHHHHTTCCEEEEEEEEECSCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCC-Ccc-cc-ccccCCCCCEEECCCCCcccccchhh
Confidence 44455666666666666655554 56666666666666665 232 33 55555666666666666665555555
Q ss_pred CCCCCcEEEccCCCCCCCchhhcCCCCCcEEEccCCcCcccch--hccCCCCCCEEEeccCCCCC
Q 001385 195 RLPVLEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPV--ELRECVGLVELSLEHNRLVR 257 (1088)
Q Consensus 195 ~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~lp~--~l~~l~~L~~L~Ls~N~l~~ 257 (1088)
.+++|++|+|++|+++.+| .+..+++|++|++++|.++.++. .+..+++|++|++++|.+.+
T Consensus 91 ~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 91 VADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp HHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred cCCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence 5555666666666665554 45555556666666665554443 45555555555555555543
No 130
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.41 E-value=1.8e-14 Score=176.76 Aligned_cols=153 Identities=12% Similarity=-0.006 Sum_probs=96.5
Q ss_pred cCCCCCccEEEeeCCCCCCC----CccccccCccccEEeCcCCCCCC----CCccccccCCCCccEEEccCCCCCCcccc
Q 001385 121 VKRREPLRAVVLTKGVGSGH----LSDGIGVLTRLMRSDLSTSGPGN----NMGSGFCDHWKTVTAVSLCGLGLSALPVD 192 (1088)
Q Consensus 121 ~~~l~~L~~L~Ls~n~i~~~----~p~~l~~l~~L~~L~Ls~N~l~~----~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~ 192 (1088)
...+++|++|+|++|.+++. ++..+.++++|+.|+|++|. .. ..++..+..+++|++|+|++|.+..+|..
T Consensus 160 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~-~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~ 238 (592)
T 3ogk_B 160 VTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTE-FAKISPKDLETIARNCRSLVSVKVGDFEILELVGF 238 (592)
T ss_dssp HHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCC-CSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHH
T ss_pred HhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccC-CCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHH
Confidence 34678899999998887654 33445678889999999887 33 23444556788999999999888877777
Q ss_pred ccCCCCCcEEEccCCCCC----CCchhhcCCCCCcEEEccCCcCcccchhccCCCCCCEEEeccCCCCCCcc--cccCCc
Q 001385 193 LTRLPVLEKLYLDNNKLS----TLPPELGAMKNLKVLIVDNNMLVCVPVELRECVGLVELSLEHNRLVRPLL--DFRAMA 266 (1088)
Q Consensus 193 l~~l~~L~~L~L~~N~l~----~lp~~l~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~~~~--~l~~l~ 266 (1088)
+..+++|++|+++.+... ..+..+..+++|+.|+++++....+|..+..+++|++|+|++|.+++... .+..++
T Consensus 239 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~ 318 (592)
T 3ogk_B 239 FKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCP 318 (592)
T ss_dssp HHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCT
T ss_pred HhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCc
Confidence 777777777777643221 22233445555555555554444555555555666666666665433221 134455
Q ss_pred cccEEEec
Q 001385 267 ELKILRLF 274 (1088)
Q Consensus 267 ~L~~L~Ls 274 (1088)
+|+.|+++
T Consensus 319 ~L~~L~L~ 326 (592)
T 3ogk_B 319 NLEVLETR 326 (592)
T ss_dssp TCCEEEEE
T ss_pred CCCEEecc
Confidence 55555554
No 131
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.41 E-value=1.1e-12 Score=136.42 Aligned_cols=127 Identities=18% Similarity=0.207 Sum_probs=79.1
Q ss_pred cEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccc-cccCCCCccEEEccCCCCCCc-cccccCCCCCcEEEcc
Q 001385 128 RAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSG-FCDHWKTVTAVSLCGLGLSAL-PVDLTRLPVLEKLYLD 205 (1088)
Q Consensus 128 ~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~-~~~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~ 205 (1088)
+.|++++|+++. +|..+. .+|+.|+|++|. +....+. .|..+++|++|+|++|.|+.+ |..+..+++|++|+|+
T Consensus 11 ~~l~~s~~~l~~-ip~~~~--~~l~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLKE-IPRDIP--LHTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCSS-CCSCCC--TTCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcCc-CccCCC--CCCCEEECCCCc-CCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 567777777643 555443 267777777776 4444332 366677777777777777655 4556666777777777
Q ss_pred CCCCCCCc-hhhcCCCCCcEEEccCCcCccc-chhccCCCCCCEEEeccCCCCCC
Q 001385 206 NNKLSTLP-PELGAMKNLKVLIVDNNMLVCV-PVELRECVGLVELSLEHNRLVRP 258 (1088)
Q Consensus 206 ~N~l~~lp-~~l~~l~~L~~L~Ls~N~l~~l-p~~l~~l~~L~~L~Ls~N~l~~~ 258 (1088)
+|+|+.++ ..|..+++|++|+|++|+|+.+ |..+..+++|++|+|++|.+...
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 77766444 3356666666666666666633 45566666666666666666543
No 132
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.41 E-value=1.2e-15 Score=159.63 Aligned_cols=132 Identities=17% Similarity=0.193 Sum_probs=74.5
Q ss_pred cccCccccEEeCcCCCCCCCCccc------cccCCCCccEEEccCCCCCCccccccCCCCCcEEEccCCCCCCCchhhcC
Q 001385 145 IGVLTRLMRSDLSTSGPGNNMGSG------FCDHWKTVTAVSLCGLGLSALPVDLTRLPVLEKLYLDNNKLSTLPPELGA 218 (1088)
Q Consensus 145 l~~l~~L~~L~Ls~N~l~~~~~~~------~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~N~l~~lp~~l~~ 218 (1088)
+.....++.++++.|. +.+..+. .+..+++|++|+|++|.++.+| .+..+++|++|+|++|.++.+|..+..
T Consensus 14 ~~~~~~l~~l~l~~~~-l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~ 91 (198)
T 1ds9_A 14 FEERKSVVATEAEKVE-LHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAV 91 (198)
T ss_dssp HHHTTCCCCTTCSEEE-CCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHH
T ss_pred HHhcccccCcchheeE-eccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhc
Confidence 3344555555555554 2222222 5555666666666666666655 555566666666666666666555555
Q ss_pred CCCCcEEEccCCcCcccchhccCCCCCCEEEeccCCCCCCcc--cccCCccccEEEecCCCCC
Q 001385 219 MKNLKVLIVDNNMLVCVPVELRECVGLVELSLEHNRLVRPLL--DFRAMAELKILRLFGNPLE 279 (1088)
Q Consensus 219 l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~~~~--~l~~l~~L~~L~Ls~N~l~ 279 (1088)
+++|++|++++|.++.+| .+.++++|+.|++++|.++..+. .+..+++|+.|++++|.++
T Consensus 92 ~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 92 ADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp HHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred CCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence 556666666666666554 45555566666666666655432 3555556666666665554
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.38 E-value=3.1e-12 Score=130.90 Aligned_cols=126 Identities=25% Similarity=0.319 Sum_probs=100.1
Q ss_pred ccEEEccCCCCCCccccccCCCCCcEEEccCCCCCCCch-hhcCCCCCcEEEccCCcCcccchh-ccCCCCCCEEEeccC
Q 001385 176 VTAVSLCGLGLSALPVDLTRLPVLEKLYLDNNKLSTLPP-ELGAMKNLKVLIVDNNMLVCVPVE-LRECVGLVELSLEHN 253 (1088)
Q Consensus 176 L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~N~l~~lp~-~l~~l~~L~~L~Ls~N~l~~lp~~-l~~l~~L~~L~Ls~N 253 (1088)
.+.+++++|.++.+|..+. ++|++|++++|+++.++. .+..+++|++|++++|.++.+|.. +..+++|+.|+|++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 5678888888888876543 678888888888887664 457888888888888888877654 578888888888888
Q ss_pred CCCCCcc-cccCCccccEEEecCCCCCCCcc--ccCCCCCCeEEeeCCCCCCC
Q 001385 254 RLVRPLL-DFRAMAELKILRLFGNPLEFLPE--ILPLLKLRHLSLANIRIVAD 303 (1088)
Q Consensus 254 ~l~~~~~-~l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~L~~N~l~~~ 303 (1088)
.+++.++ .+..+++|+.|+|++|.++.++. +..+++|++|+|++|++.+.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 8888775 47888889999999998886553 56788999999999988874
No 134
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.38 E-value=2.5e-12 Score=133.71 Aligned_cols=105 Identities=30% Similarity=0.400 Sum_probs=57.0
Q ss_pred CccEEEccCCCCCCccccccCCCCCcEEEccCCCCCCCc-hhhcCCCCCcEEEccCCcCcccch-hccCCCCCCEEEecc
Q 001385 175 TVTAVSLCGLGLSALPVDLTRLPVLEKLYLDNNKLSTLP-PELGAMKNLKVLIVDNNMLVCVPV-ELRECVGLVELSLEH 252 (1088)
Q Consensus 175 ~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~N~l~~lp-~~l~~l~~L~~L~Ls~N~l~~lp~-~l~~l~~L~~L~Ls~ 252 (1088)
+|++|+|++|.|+.+|..+..+++|++|+|++|.|+.++ ..|..+++|++|+|++|.|+.++. .|..+++|+.|+|++
T Consensus 32 ~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~ 111 (193)
T 2wfh_A 32 DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHG 111 (193)
T ss_dssp TCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCC
Confidence 455555555555555555555555555555555555443 235555555555555555554433 355555555555555
Q ss_pred CCCCCCcc-cccCCccccEEEecCCCCC
Q 001385 253 NRLVRPLL-DFRAMAELKILRLFGNPLE 279 (1088)
Q Consensus 253 N~l~~~~~-~l~~l~~L~~L~Ls~N~l~ 279 (1088)
|.|+.+++ .|..+++|+.|+|++|.+.
T Consensus 112 N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 112 NDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCeeChhhhhcCccccEEEeCCCCee
Confidence 55555543 3555566666666666554
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.37 E-value=4.3e-12 Score=129.85 Aligned_cols=129 Identities=25% Similarity=0.323 Sum_probs=81.8
Q ss_pred ccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCcccc-ccCCCCCcEEEcc
Q 001385 127 LRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVD-LTRLPVLEKLYLD 205 (1088)
Q Consensus 127 L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~ 205 (1088)
.+.+++++|+++. +|..+ .++|+.|+|++|+ +....+..+..+++|++|+|++|.|+.+|.. +..+++|++|+|+
T Consensus 9 ~~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSKGLTS-VPTGI--PSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSSCCSS-CCTTC--CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCCcc-CCCCC--CCCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 3566777776654 44333 2567777777776 4555555566677777777777777766643 4566777777777
Q ss_pred CCCCCCCchh-hcCCCCCcEEEccCCcCcccchh-ccCCCCCCEEEeccCCCCCCc
Q 001385 206 NNKLSTLPPE-LGAMKNLKVLIVDNNMLVCVPVE-LRECVGLVELSLEHNRLVRPL 259 (1088)
Q Consensus 206 ~N~l~~lp~~-l~~l~~L~~L~Ls~N~l~~lp~~-l~~l~~L~~L~Ls~N~l~~~~ 259 (1088)
+|+++.+|.. +..+++|++|+|++|.++.+|.. +..+++|++|+|++|.+.+..
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 7777655543 46666777777777766666554 355666666666666665543
No 136
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.26 E-value=1.5e-11 Score=139.23 Aligned_cols=191 Identities=14% Similarity=0.039 Sum_probs=134.8
Q ss_pred CCCccEEEeeCCCCC--------------------CCCcccccc--------CccccEEeCcCCCCCCCCccccccCCCC
Q 001385 124 REPLRAVVLTKGVGS--------------------GHLSDGIGV--------LTRLMRSDLSTSGPGNNMGSGFCDHWKT 175 (1088)
Q Consensus 124 l~~L~~L~Ls~n~i~--------------------~~~p~~l~~--------l~~L~~L~Ls~N~l~~~~~~~~~~~l~~ 175 (1088)
+++|+.|||++|++. ......|.+ |++|+.|+|.+ . +..+....|..|++
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~-i~~I~~~aF~~~~~ 125 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-K-IKNIEDAAFKGCDN 125 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-T-CCEECTTTTTTCTT
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-c-ccchhHHHhhcCcc
Confidence 677888888888776 112235666 88888888887 4 56666677888888
Q ss_pred ccEEEccCCCCCCccc-cccCCCCCcEEEccCCCC-------C--------------------CCchh------------
Q 001385 176 VTAVSLCGLGLSALPV-DLTRLPVLEKLYLDNNKL-------S--------------------TLPPE------------ 215 (1088)
Q Consensus 176 L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~N~l-------~--------------------~lp~~------------ 215 (1088)
|+.|+|++|.+..++. .|..+.++.++.+..+.. . .++..
T Consensus 126 L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~ 205 (329)
T 3sb4_A 126 LKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDIN 205 (329)
T ss_dssp CCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCS
T ss_pred cceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccc
Confidence 8888888888876664 455666666665544111 0 00000
Q ss_pred ---------------h-cCCCCCcEEEccCCcCcccch-hccCCCCCCEEEeccCCCCCCcc-cccCCcccc-EEEecCC
Q 001385 216 ---------------L-GAMKNLKVLIVDNNMLVCVPV-ELRECVGLVELSLEHNRLVRPLL-DFRAMAELK-ILRLFGN 276 (1088)
Q Consensus 216 ---------------l-~~l~~L~~L~Ls~N~l~~lp~-~l~~l~~L~~L~Ls~N~l~~~~~-~l~~l~~L~-~L~Ls~N 276 (1088)
+ ..+++|+.|+|++|.++.+|. .|.+|.+|+.|+|.+| ++.+.. .|.++.+|+ .|++.+
T Consensus 206 ~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~- 283 (329)
T 3sb4_A 206 FLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA- 283 (329)
T ss_dssp EEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-
T ss_pred eEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-
Confidence 0 127899999999999998886 5789999999999998 766664 699999999 999988
Q ss_pred CCCCCc--cccCCCCCCeEEeeCCCCCCCccccchhhhhcCcCCcccc
Q 001385 277 PLEFLP--EILPLLKLRHLSLANIRIVADENLRSVNVQIEMENNSYFG 322 (1088)
Q Consensus 277 ~l~~l~--~l~~l~~L~~L~L~~N~l~~~~~l~~l~~~~~l~~l~~l~ 322 (1088)
.++.++ .|.+|++|+.|+++.|.++.++.-. +.++++|+.++
T Consensus 284 ~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~a----F~~~~~L~~ly 327 (329)
T 3sb4_A 284 SVTAIEFGAFMGCDNLRYVLATGDKITTLGDEL----FGNGVPSKLIY 327 (329)
T ss_dssp TCCEECTTTTTTCTTEEEEEECSSCCCEECTTT----TCTTCCCCEEE
T ss_pred cceEEchhhhhCCccCCEEEeCCCccCccchhh----hcCCcchhhhc
Confidence 677544 6889999999999999888643221 23466666554
No 137
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.24 E-value=1.9e-12 Score=158.83 Aligned_cols=198 Identities=17% Similarity=0.110 Sum_probs=98.7
Q ss_pred CCCCccEEEeeCCCCCCCCcccc----ccCccccEEeCcCCC--CCCCCccccccCCCCccEEEccCC-CCCCccccccC
Q 001385 123 RREPLRAVVLTKGVGSGHLSDGI----GVLTRLMRSDLSTSG--PGNNMGSGFCDHWKTVTAVSLCGL-GLSALPVDLTR 195 (1088)
Q Consensus 123 ~l~~L~~L~Ls~n~i~~~~p~~l----~~l~~L~~L~Ls~N~--l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~ 195 (1088)
.+++|++|+|++|.+++..+..+ ..+++|+.|+|++|. +....+...+..+++|++|+|++| .++.++..+..
T Consensus 154 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~ 233 (594)
T 2p1m_B 154 TCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQR 233 (594)
T ss_dssp HCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHH
T ss_pred hCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhc
Confidence 45666666666665544332222 244566666666553 000111122233466666666665 22233333344
Q ss_pred CCCCcEEEccCCC--------------------------CC-----CCchhhcCCCCCcEEEccCCcCc--ccchhccCC
Q 001385 196 LPVLEKLYLDNNK--------------------------LS-----TLPPELGAMKNLKVLIVDNNMLV--CVPVELREC 242 (1088)
Q Consensus 196 l~~L~~L~L~~N~--------------------------l~-----~lp~~l~~l~~L~~L~Ls~N~l~--~lp~~l~~l 242 (1088)
+++|++|+++.+. +. .++..+..+++|++|+|++|.++ .+...+.++
T Consensus 234 ~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~ 313 (594)
T 2p1m_B 234 APQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQC 313 (594)
T ss_dssp CTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTC
T ss_pred CCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcC
Confidence 4444444433221 11 22333335678888888888766 233345677
Q ss_pred CCCCEEEeccCCCCCCc-cc-ccCCccccEEEecC---------CCCC--CCcccc-CCCCCCeEEeeCCCCCCCccccc
Q 001385 243 VGLVELSLEHNRLVRPL-LD-FRAMAELKILRLFG---------NPLE--FLPEIL-PLLKLRHLSLANIRIVADENLRS 308 (1088)
Q Consensus 243 ~~L~~L~Ls~N~l~~~~-~~-l~~l~~L~~L~Ls~---------N~l~--~l~~l~-~l~~L~~L~L~~N~l~~~~~l~~ 308 (1088)
++|++|++++| +.... .. ...+++|+.|+|++ |.++ .+..+. .+++|++|.+.+|.++.. .+..
T Consensus 314 ~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~-~~~~ 391 (594)
T 2p1m_B 314 PKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNA-ALIT 391 (594)
T ss_dssp TTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHH-HHHH
T ss_pred CCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHH-HHHH
Confidence 88888888877 33211 11 23467777777732 3444 122222 366777777766666541 0111
Q ss_pred hhhhhcCcCCcccccc
Q 001385 309 VNVQIEMENNSYFGAS 324 (1088)
Q Consensus 309 l~~~~~l~~l~~l~l~ 324 (1088)
+ ...+++|+.|++.
T Consensus 392 l--~~~~~~L~~L~L~ 405 (594)
T 2p1m_B 392 I--ARNRPNMTRFRLC 405 (594)
T ss_dssp H--HHHCTTCCEEEEE
T ss_pred H--HhhCCCcceeEee
Confidence 0 1125566666665
No 138
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.23 E-value=2.5e-11 Score=127.41 Aligned_cols=176 Identities=20% Similarity=0.259 Sum_probs=149.8
Q ss_pred hHHHhhhhcCCCCccccccccccccccceeeccCChhhhhhHHHHhccccCCchhh-HHHHHCCCcHHHHHHhccCChHH
Q 001385 347 ASALAKIMQDQENRVVVGKDENAVRQLISMISSDNRHVVEQACSALSSLAGDVSVA-MLLMKCDIMQPIIAVLKSFAPEE 425 (1088)
Q Consensus 347 ~~~L~~i~~l~~N~l~ip~~~~~Lp~L~~L~Ls~N~~v~~~a~~~L~~L~~~~~~~-~~l~~~~~~~~Ll~lL~~~~~~~ 425 (1088)
.+.|.++..............+.++.|..+.-+.++.+.+.++++|++++.+.... ..+++.|+++.++.+|.+.++..
T Consensus 33 ~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v 112 (210)
T 4db6_A 33 LRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQI 112 (210)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcCCcHHH
Confidence 44555554322111122233467888988888889999999999999999766655 88999999999999999999999
Q ss_pred HHHHHHHHHhhhccChHHHHHHhhhhhHHHHHHHhcCCChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcCC
Q 001385 426 VKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGP 505 (1088)
Q Consensus 426 ~~~~l~~L~~L~~~sd~~~~~v~~~g~lp~L~~Ll~~~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~~ 505 (1088)
+..++.+|.+++..++...+.+++.|++|.|..++.+.+..++..|+++++|++.+.+..++.+.+.++++.|+.++.+.
T Consensus 113 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~ 192 (210)
T 4db6_A 113 LQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE 192 (210)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCC
Confidence 99999999999988888888889999999999999999999999999999999998777777777999999999999999
Q ss_pred chhHHHHHHHHHHhhcc
Q 001385 506 EPRVNKAAARALAILGE 522 (1088)
Q Consensus 506 ~~~v~~~a~~aL~~l~~ 522 (1088)
++++++.|+++|..++.
T Consensus 193 ~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 193 NEKIQKEAQEALEKLQS 209 (210)
T ss_dssp CHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHhc
Confidence 99999999999998875
No 139
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.23 E-value=5.8e-13 Score=153.08 Aligned_cols=132 Identities=17% Similarity=0.039 Sum_probs=56.2
Q ss_pred CCccEEEeeCCCCCCCCcccccc-----CccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCc-----cccc-
Q 001385 125 EPLRAVVLTKGVGSGHLSDGIGV-----LTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSAL-----PVDL- 193 (1088)
Q Consensus 125 ~~L~~L~Ls~n~i~~~~p~~l~~-----l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~l-----p~~l- 193 (1088)
++|+.|+|++|.++......+.. .++|+.|+|++|.+...........+++|++|+|++|.|+.. ...+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 45666666666655432222221 145666666665521111112222334555555555555421 1111
Q ss_pred cCCCCCcEEEccCCCCC-----CCchhhcCCCCCcEEEccCCcCc-----ccchhccCCCCCCEEEeccCCCC
Q 001385 194 TRLPVLEKLYLDNNKLS-----TLPPELGAMKNLKVLIVDNNMLV-----CVPVELRECVGLVELSLEHNRLV 256 (1088)
Q Consensus 194 ~~l~~L~~L~L~~N~l~-----~lp~~l~~l~~L~~L~Ls~N~l~-----~lp~~l~~l~~L~~L~Ls~N~l~ 256 (1088)
...++|++|+|++|.|+ .++..+..+++|++|+|++|.|+ .++..+..+++|++|+|++|.|+
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG 224 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence 12344555555555543 12233344444444444444444 12233333344444444444443
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.22 E-value=3.4e-11 Score=122.32 Aligned_cols=103 Identities=29% Similarity=0.428 Sum_probs=49.3
Q ss_pred cEEEccCCCCCCccccccCCCCCcEEEccCCCCCCC-chhhcCCCCCcEEEccCCcCcccchhccCCCCCCEEEeccCCC
Q 001385 177 TAVSLCGLGLSALPVDLTRLPVLEKLYLDNNKLSTL-PPELGAMKNLKVLIVDNNMLVCVPVELRECVGLVELSLEHNRL 255 (1088)
Q Consensus 177 ~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l-p~~l~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~Ls~N~l 255 (1088)
+.|++++|.++.+|..+. .+|++|+|++|+|+.+ |..|..+++|++|+|++|+|+.+|..
T Consensus 12 ~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~----------------- 72 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAG----------------- 72 (170)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT-----------------
T ss_pred CEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChh-----------------
Confidence 445555555555554332 4455555555555533 23344444444444444444443332
Q ss_pred CCCcccccCCccccEEEecCCCCCCCc--cccCCCCCCeEEeeCCCCCCC
Q 001385 256 VRPLLDFRAMAELKILRLFGNPLEFLP--EILPLLKLRHLSLANIRIVAD 303 (1088)
Q Consensus 256 ~~~~~~l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~L~~N~l~~~ 303 (1088)
.|..+++|++|+|++|+|+.++ .+..+++|++|+|++|++.+.
T Consensus 73 -----~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 73 -----VFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp -----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred -----hccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 2344445555555555554333 244555555566666655553
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.22 E-value=3.8e-11 Score=122.51 Aligned_cols=100 Identities=26% Similarity=0.464 Sum_probs=50.6
Q ss_pred cEEEccCCCCCCccccccCCCCCcEEEccCCCCCCC-chhhcCCCCCcEEEccCCcCcccchh-ccCCCCCCEEEeccCC
Q 001385 177 TAVSLCGLGLSALPVDLTRLPVLEKLYLDNNKLSTL-PPELGAMKNLKVLIVDNNMLVCVPVE-LRECVGLVELSLEHNR 254 (1088)
Q Consensus 177 ~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l-p~~l~~l~~L~~L~Ls~N~l~~lp~~-l~~l~~L~~L~Ls~N~ 254 (1088)
+.+++++|.++.+|..+. .+|++|+|++|+|+.+ |..|..+++|++|+|++|+|+.+|.. +.++++|+.|+|++|+
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 455666666666655443 5556666666665544 33455555555555555555554443 2445555555555555
Q ss_pred CCCCccc-ccCCccccEEEecCCCC
Q 001385 255 LVRPLLD-FRAMAELKILRLFGNPL 278 (1088)
Q Consensus 255 l~~~~~~-l~~l~~L~~L~Ls~N~l 278 (1088)
|+.+++. |..+++|+.|+|++|.+
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred cceeCHHHhccccCCCEEEeCCCCc
Confidence 5444432 44444444444444433
No 142
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.21 E-value=3.4e-13 Score=165.40 Aligned_cols=133 Identities=16% Similarity=0.057 Sum_probs=85.8
Q ss_pred cCCCCCccEEEeeCCCCCCCCccccc-cCccccEEeCcCCCCCCC-CccccccCCCCccEEEccCCCCCC-----ccccc
Q 001385 121 VKRREPLRAVVLTKGVGSGHLSDGIG-VLTRLMRSDLSTSGPGNN-MGSGFCDHWKTVTAVSLCGLGLSA-----LPVDL 193 (1088)
Q Consensus 121 ~~~l~~L~~L~Ls~n~i~~~~p~~l~-~l~~L~~L~Ls~N~l~~~-~~~~~~~~l~~L~~L~Ls~n~l~~-----lp~~l 193 (1088)
...+++|++|+|++|.+++..+..+. .+++|++|+|++|..+.. .++..+..+++|++|+|++|.++. ++...
T Consensus 101 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~ 180 (594)
T 2p1m_B 101 SSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP 180 (594)
T ss_dssp HHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC
T ss_pred HHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh
Confidence 34677888888888877665555554 577888888887731222 133444567888888888887653 33333
Q ss_pred cCCCCCcEEEccCCC--CC--CCchhhcCCCCCcEEEccCC-cCcccchhccCCCCCCEEEeccC
Q 001385 194 TRLPVLEKLYLDNNK--LS--TLPPELGAMKNLKVLIVDNN-MLVCVPVELRECVGLVELSLEHN 253 (1088)
Q Consensus 194 ~~l~~L~~L~L~~N~--l~--~lp~~l~~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~Ls~N 253 (1088)
..+++|++|++++|. +. .++..+..+++|++|+|++| .++.++..+.++++|++|++..+
T Consensus 181 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGY 245 (594)
T ss_dssp TTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBC
T ss_pred hcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccc
Confidence 466788888888776 22 22222345678888888877 44466666677777777775544
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.20 E-value=7.5e-11 Score=120.28 Aligned_cols=103 Identities=23% Similarity=0.321 Sum_probs=57.8
Q ss_pred cEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCcccc-ccCCCCCcEEEccC
Q 001385 128 RAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVD-LTRLPVLEKLYLDN 206 (1088)
Q Consensus 128 ~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~ 206 (1088)
+.+++++|+++. +|..+. ++|++|+|++|+ +....+..|..+++|++|+|++|+|+.+|.. +..+++|++|+|++
T Consensus 15 ~~l~~~~n~l~~-iP~~~~--~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLAS-VPAGIP--TDKQRLWLNNNQ-ITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCSS-CCSCCC--TTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCCc-cCCCcC--CCCcEEEeCCCC-ccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 456666666643 454442 566666666666 4455555555666666666666666655543 34555555555555
Q ss_pred CCCCCCchh-hcCCCCCcEEEccCCcCcc
Q 001385 207 NKLSTLPPE-LGAMKNLKVLIVDNNMLVC 234 (1088)
Q Consensus 207 N~l~~lp~~-l~~l~~L~~L~Ls~N~l~~ 234 (1088)
|+|+.+|.. |..+++|++|+|++|.+..
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred CccceeCHHHhccccCCCEEEeCCCCccc
Confidence 555555543 4555555555555555543
No 144
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.19 E-value=6.1e-11 Score=124.50 Aligned_cols=160 Identities=17% Similarity=0.230 Sum_probs=144.1
Q ss_pred ccccccceeeccCChhhhhhHHHHhccccCCchhh-HHHHHCCCcHHHHHHhccCChHHHHHHHHHHHhhhccChHHHHH
Q 001385 368 NAVRQLISMISSDNRHVVEQACSALSSLAGDVSVA-MLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQK 446 (1088)
Q Consensus 368 ~~Lp~L~~L~Ls~N~~v~~~a~~~L~~L~~~~~~~-~~l~~~~~~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd~~~~~ 446 (1088)
+..+.|..|.-+.++.+...++++|++++...... ..+++.|+++.++.+|.+.+++.+..++.+|.+++..++...+.
T Consensus 12 ~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (210)
T 4db6_A 12 SELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (210)
T ss_dssp -CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 34567778888899999999999999999766655 88999999999999999999999999999999999888888889
Q ss_pred HhhhhhHHHHHHHhcCCChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcCCchhHHHHHHHHHHhhcch-HH
Q 001385 447 MLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGEN-ES 525 (1088)
Q Consensus 447 v~~~g~lp~L~~Ll~~~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~-~~ 525 (1088)
+++.|++|.|..++.+.++.++..|+++++|++.+.+...+.+.+.++++.|+.++.+.++++++.|++++..+... +.
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~ 171 (210)
T 4db6_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 171 (210)
T ss_dssp HHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcH
Confidence 99999999999999999999999999999999998888877777999999999999999999999999999999876 44
Q ss_pred HH
Q 001385 526 LR 527 (1088)
Q Consensus 526 ~r 527 (1088)
.+
T Consensus 172 ~~ 173 (210)
T 4db6_A 172 QK 173 (210)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 145
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.18 E-value=4.1e-11 Score=132.48 Aligned_cols=158 Identities=11% Similarity=0.092 Sum_probs=144.0
Q ss_pred ccccccccce-eeccCChhhhhhHHHHhccccCCchhh-HHHHHCCCcHHHHHHhccC-ChHHHHHHHHHHHhhhccChH
Q 001385 366 DENAVRQLIS-MISSDNRHVVEQACSALSSLAGDVSVA-MLLMKCDIMQPIIAVLKSF-APEEVKSVLQVVGQLAFASDT 442 (1088)
Q Consensus 366 ~~~~Lp~L~~-L~Ls~N~~v~~~a~~~L~~L~~~~~~~-~~l~~~~~~~~Ll~lL~~~-~~~~~~~~l~~L~~L~~~sd~ 442 (1088)
..|.+|.|.. |.-+.++.+++.|+|+|++++.+++.+ ..++++|++++|+.+|++. +...+..++.+|.+++.++..
T Consensus 79 ~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~ 158 (296)
T 1xqr_A 79 QLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEA 158 (296)
T ss_dssp HTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred HcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcH
Confidence 3577888888 888899999999999999999988877 8899999999999999864 677788899999999977777
Q ss_pred HHHHHhhhhhHHHHHHHhcCCChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcCCchhHHHHHHHHHHhhcc
Q 001385 443 VAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGE 522 (1088)
Q Consensus 443 ~~~~v~~~g~lp~L~~Ll~~~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~ 522 (1088)
..+.+.+.|++|.|..++.+.+..+|+.|+++++|++.+..++++.++++|+++.|+.++.+++..+++.+++++..+..
T Consensus 159 ~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~ 238 (296)
T 1xqr_A 159 GLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVT 238 (296)
T ss_dssp HHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHh
Confidence 77788889999999999999999999999999999999988888888899999999999999999999999999988875
Q ss_pred h
Q 001385 523 N 523 (1088)
Q Consensus 523 ~ 523 (1088)
.
T Consensus 239 ~ 239 (296)
T 1xqr_A 239 D 239 (296)
T ss_dssp T
T ss_pred C
Confidence 5
No 146
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.17 E-value=1.3e-10 Score=118.13 Aligned_cols=102 Identities=23% Similarity=0.284 Sum_probs=49.4
Q ss_pred cEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCcccc-ccCCCCCcEEEccC
Q 001385 128 RAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVD-LTRLPVLEKLYLDN 206 (1088)
Q Consensus 128 ~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~ 206 (1088)
+.|++++|.++. +|..+. ++|++|+|++|+ +....+..|..+++|++|+|++|+|+.+|.. +..+++|++|+|++
T Consensus 12 ~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 12 TTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQ-ITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TEEECTTSCCSS-CCSCCC--TTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccCC--CCCcEEEcCCCc-CCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 455666665544 443332 455555555555 4444444455555555555555555544433 24445555555555
Q ss_pred CCCCCCch-hhcCCCCCcEEEccCCcCc
Q 001385 207 NKLSTLPP-ELGAMKNLKVLIVDNNMLV 233 (1088)
Q Consensus 207 N~l~~lp~-~l~~l~~L~~L~Ls~N~l~ 233 (1088)
|+|+.+|. .|..+++|++|+|++|.++
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 55544443 2444444444444444443
No 147
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.14 E-value=2.4e-11 Score=137.47 Aligned_cols=211 Identities=14% Similarity=0.045 Sum_probs=151.9
Q ss_pred CCCccEEEeeCCCCCCCCcccccc-CccccEEeCcCCCCCC--------------------CCccccccC--------CC
Q 001385 124 REPLRAVVLTKGVGSGHLSDGIGV-LTRLMRSDLSTSGPGN--------------------NMGSGFCDH--------WK 174 (1088)
Q Consensus 124 l~~L~~L~Ls~n~i~~~~p~~l~~-l~~L~~L~Ls~N~l~~--------------------~~~~~~~~~--------l~ 174 (1088)
+.+|+.|.++++ +...--..+.. +++|+.|||++|+ +. .+....|.+ ++
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~-i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~ 101 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAE-IKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQ 101 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEE-ECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECT
T ss_pred hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcce-eEEecCccccccccccccccccccCHHHhcccccccccccC
Confidence 557899999876 32211123444 7889999999998 33 123346667 89
Q ss_pred CccEEEccCCCCCCccc-cccCCCCCcEEEccCCCCCCCc-hhhcCCCCCcEEEccCCcC-------c------------
Q 001385 175 TVTAVSLCGLGLSALPV-DLTRLPVLEKLYLDNNKLSTLP-PELGAMKNLKVLIVDNNML-------V------------ 233 (1088)
Q Consensus 175 ~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~N~l~~lp-~~l~~l~~L~~L~Ls~N~l-------~------------ 233 (1088)
+|+.|+|.+ .++.++. .|.+|++|+.|++++|.+..++ ..|..+.++..+.+..+.. .
T Consensus 102 ~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~ 180 (329)
T 3sb4_A 102 TLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLET 180 (329)
T ss_dssp TCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEE
T ss_pred CCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccce
Confidence 999999998 8888876 5788999999999999987555 4566666777666554211 0
Q ss_pred --------ccchh---------------------------c-cCCCCCCEEEeccCCCCCCcc-cccCCccccEEEecCC
Q 001385 234 --------CVPVE---------------------------L-RECVGLVELSLEHNRLVRPLL-DFRAMAELKILRLFGN 276 (1088)
Q Consensus 234 --------~lp~~---------------------------l-~~l~~L~~L~Ls~N~l~~~~~-~l~~l~~L~~L~Ls~N 276 (1088)
.++.. + ..+++|+.|+|++|+++.++. .|..+.+|+.|+|.+|
T Consensus 181 ~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n 260 (329)
T 3sb4_A 181 TIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN 260 (329)
T ss_dssp EEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT
T ss_pred eEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc
Confidence 00000 0 137899999999999998875 6999999999999998
Q ss_pred CCCCCc--cccCCCCCC-eEEeeCCCCCCCccccchhhhhcCcCCccccccccchhhhHH-hhhcccCCCC
Q 001385 277 PLEFLP--EILPLLKLR-HLSLANIRIVADENLRSVNVQIEMENNSYFGASRHKLSAFFS-LIFRFSSCHH 343 (1088)
Q Consensus 277 ~l~~l~--~l~~l~~L~-~L~L~~N~l~~~~~l~~l~~~~~l~~l~~l~l~~n~l~~~~~-~l~~l~~l~~ 343 (1088)
++.++ .|.+|.+|+ .|++.+ .++..+.- .+.++.+|+.+++.+|.+..+.. .+.++.+|+.
T Consensus 261 -i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~----aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ 325 (329)
T 3sb4_A 261 -LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFG----AFMGCDNLRYVLATGDKITTLGDELFGNGVPSKL 325 (329)
T ss_dssp -CCEECTTTTTTCTTCCEEEEECT-TCCEECTT----TTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCE
T ss_pred -cceehHHHhhCChhccEEEEEcc-cceEEchh----hhhCCccCCEEEeCCCccCccchhhhcCCcchhh
Confidence 77555 588999999 999988 56543221 14468899999999999888775 4445555554
No 148
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.13 E-value=1.2e-10 Score=140.59 Aligned_cols=176 Identities=16% Similarity=0.261 Sum_probs=154.1
Q ss_pred hHHHhhhhcCCCCccccccccccccccceeeccCChhhhhhHHHHhccccCCchhh-HHHHHCCCcHHHHHHhccCChHH
Q 001385 347 ASALAKIMQDQENRVVVGKDENAVRQLISMISSDNRHVVEQACSALSSLAGDVSVA-MLLMKCDIMQPIIAVLKSFAPEE 425 (1088)
Q Consensus 347 ~~~L~~i~~l~~N~l~ip~~~~~Lp~L~~L~Ls~N~~v~~~a~~~L~~L~~~~~~~-~~l~~~~~~~~Ll~lL~~~~~~~ 425 (1088)
.|.+.++.....+...+....+.+|.|..|.-+.++.+...++|+|.+++.+.... ..++..|+++.|+.+|.+.+...
T Consensus 230 ~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v 309 (529)
T 3tpo_A 230 TWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPI 309 (529)
T ss_dssp HHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHH
T ss_pred HHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhH
Confidence 45555554433332222222356788888888999999999999999999888777 77889999999999999999999
Q ss_pred HHHHHHHHHhhhccChHHHHHHhhhhhHHHHHHHhcCCChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcCC
Q 001385 426 VKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGP 505 (1088)
Q Consensus 426 ~~~~l~~L~~L~~~sd~~~~~v~~~g~lp~L~~Ll~~~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~~ 505 (1088)
+..++.+|.+++.+++...+.+++.|+++.|..|+.+.+..+|+.|+++++|++.+...+.+.+.++++++.|+.++.+.
T Consensus 310 ~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~ 389 (529)
T 3tpo_A 310 VTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA 389 (529)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCC
Confidence 99999999999988999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHhhcc
Q 001385 506 EPRVNKAAARALAILGE 522 (1088)
Q Consensus 506 ~~~v~~~a~~aL~~l~~ 522 (1088)
+.+++++|+|+|.++..
T Consensus 390 ~~~v~~~A~~aL~nl~~ 406 (529)
T 3tpo_A 390 DFKTQKAAAWAITNYTS 406 (529)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHc
Confidence 99999999999999864
No 149
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.12 E-value=1e-10 Score=126.49 Aligned_cols=156 Identities=21% Similarity=0.267 Sum_probs=144.4
Q ss_pred cccccccceeeccCChhhhhhHHHHhccccCCchhh-HHHHHCCCcHHHHHHhccCChHHHHHHHHHHHhhhccChHHHH
Q 001385 367 ENAVRQLISMISSDNRHVVEQACSALSSLAGDVSVA-MLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQ 445 (1088)
Q Consensus 367 ~~~Lp~L~~L~Ls~N~~v~~~a~~~L~~L~~~~~~~-~~l~~~~~~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd~~~~ 445 (1088)
.+.++.|..+.-+.++.+.+.++++|++|+.+.... ..+++.|+++.++.++.+.++..+..++.+|.+++..++...+
T Consensus 95 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 174 (252)
T 4db8_A 95 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 174 (252)
T ss_dssp TTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence 467888888888899999999999999999988888 8899999999999999998889999999999999988888888
Q ss_pred HHhhhhhHHHHHHHhcCCChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcCCchhHHHHHHHHHHhhcc
Q 001385 446 KMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGE 522 (1088)
Q Consensus 446 ~v~~~g~lp~L~~Ll~~~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~ 522 (1088)
.+++.|++|.|..++.+.+..++..|+++++|++.+.+...+.+.+.++++.|+.++.+.+++++++|+++|..+..
T Consensus 175 ~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 175 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 88999999999999999999999999999999998888888778899999999999999999999999999998864
No 150
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.11 E-value=1.5e-10 Score=139.88 Aligned_cols=178 Identities=22% Similarity=0.260 Sum_probs=145.1
Q ss_pred hhHHHhhhhcCCCCccccccccccccccceeeccCChhhhhhHHHHhccccCCchhh-HHHHHCCCcHHHHHHhccCCh-
Q 001385 346 LASALAKIMQDQENRVVVGKDENAVRQLISMISSDNRHVVEQACSALSSLAGDVSVA-MLLMKCDIMQPIIAVLKSFAP- 423 (1088)
Q Consensus 346 l~~~L~~i~~l~~N~l~ip~~~~~Lp~L~~L~Ls~N~~v~~~a~~~L~~L~~~~~~~-~~l~~~~~~~~Ll~lL~~~~~- 423 (1088)
.+|+|.+|..............|.+|.|..|.-+.+..+++.++|+|++|+.+...+ ..+++.|++++++.++.....
T Consensus 140 Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~ 219 (529)
T 3tpo_A 140 SAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLS 219 (529)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGG
T ss_pred HHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchh
Confidence 478888887655433344455678999999999999999999999999999988877 889999999999888865432
Q ss_pred ----------------------------------------------HHHHHHHHHHHhhhccChHHHHHHhhhhhHHHHH
Q 001385 424 ----------------------------------------------EEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLK 457 (1088)
Q Consensus 424 ----------------------------------------------~~~~~~l~~L~~L~~~sd~~~~~v~~~g~lp~L~ 457 (1088)
+.+..++.+|.+++..++...+.+.+.|++|.|+
T Consensus 220 ~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv 299 (529)
T 3tpo_A 220 TLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLV 299 (529)
T ss_dssp GSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHH
Confidence 1111223333344433334456788899999999
Q ss_pred HHhcCCChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcCCchhHHHHHHHHHHhhcch
Q 001385 458 LLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGEN 523 (1088)
Q Consensus 458 ~Ll~~~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 523 (1088)
.++.+.+..++..|+++++|++.+.+..++.++++|+++.|+.++.+.++.++++|||+|..++..
T Consensus 300 ~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~ 365 (529)
T 3tpo_A 300 KLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAG 365 (529)
T ss_dssp HHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTS
T ss_pred HHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999999999999754
No 151
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.09 E-value=1.5e-10 Score=139.23 Aligned_cols=179 Identities=22% Similarity=0.262 Sum_probs=146.7
Q ss_pred chhHHHhhhhcCCCCccccccccccccccceeeccCChhhhhhHHHHhccccCCchhh-HHHHHCCCcHHHHHHhccCCh
Q 001385 345 LLASALAKIMQDQENRVVVGKDENAVRQLISMISSDNRHVVEQACSALSSLAGDVSVA-MLLMKCDIMQPIIAVLKSFAP 423 (1088)
Q Consensus 345 ~l~~~L~~i~~l~~N~l~ip~~~~~Lp~L~~L~Ls~N~~v~~~a~~~L~~L~~~~~~~-~~l~~~~~~~~Ll~lL~~~~~ 423 (1088)
..+|+|.+|+.............|.+|.|..|.-+.+..+++.++|+|++|+.+...+ ..+++.|++++++.++...+.
T Consensus 120 ~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~ 199 (510)
T 3ul1_B 120 ESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDL 199 (510)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCG
T ss_pred HHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccc
Confidence 3478899997655433334445678999999999999999999999999999998887 888999999999988865432
Q ss_pred -----------------------------------------------HHHHHHHHHHHhhhccChHHHHHHhhhhhHHHH
Q 001385 424 -----------------------------------------------EEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSL 456 (1088)
Q Consensus 424 -----------------------------------------------~~~~~~l~~L~~L~~~sd~~~~~v~~~g~lp~L 456 (1088)
+.+..++.+|.+++..++...+.+.+.|++|.|
T Consensus 200 ~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~L 279 (510)
T 3ul1_B 200 STLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQL 279 (510)
T ss_dssp GGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHH
T ss_pred hhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhh
Confidence 112223444445554444456678899999999
Q ss_pred HHHhcCCChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcCCchhHHHHHHHHHHhhcch
Q 001385 457 KLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGEN 523 (1088)
Q Consensus 457 ~~Ll~~~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 523 (1088)
+.++.+.+..++..|+++++|++.+.+.+++.+++.++++.|+.++.+.+..++++|+|++..++..
T Consensus 280 v~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~ 346 (510)
T 3ul1_B 280 VKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAG 346 (510)
T ss_dssp HHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTS
T ss_pred hhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999754
No 152
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.09 E-value=2e-10 Score=130.49 Aligned_cols=185 Identities=14% Similarity=0.118 Sum_probs=146.3
Q ss_pred hhHHHhhhhcCCC-CccccccccccccccceeeccCChhhhhhHHHHhccccCC-chh-hHHHHHCCCcHHHHHHh-ccC
Q 001385 346 LASALAKIMQDQE-NRVVVGKDENAVRQLISMISSDNRHVVEQACSALSSLAGD-VSV-AMLLMKCDIMQPIIAVL-KSF 421 (1088)
Q Consensus 346 l~~~L~~i~~l~~-N~l~ip~~~~~Lp~L~~L~Ls~N~~v~~~a~~~L~~L~~~-~~~-~~~l~~~~~~~~Ll~lL-~~~ 421 (1088)
.++.|.++..... +...+...-+.+|.|..|.-+.++.+++.++++|.+|+.. ... ...+.+.|++++|+.+| +..
T Consensus 104 Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~ 183 (354)
T 3nmw_A 104 AGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK 183 (354)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCC
Confidence 3566777753332 2212222334599999999899999999999999999974 334 48889999999999975 556
Q ss_pred ChHHHHHHHHHHHhhhccChHHHHHHh-hhhhHHHHHHHhcCCCh----hHHHHHHHHHhhhhc---cccccceeecccC
Q 001385 422 APEEVKSVLQVVGQLAFASDTVAQKML-TKDVLKSLKLLCAHKNP----EVQRFALLAVGNLAF---CLENRRILVTSES 493 (1088)
Q Consensus 422 ~~~~~~~~l~~L~~L~~~sd~~~~~v~-~~g~lp~L~~Ll~~~~~----~vq~~Al~algnla~---~~~~~~~~v~~~~ 493 (1088)
+.+.+..++.+|.+|+..++.....+. ..|++|.|+.++.+.+. .++..|++++.|++. +.++.++.+.++|
T Consensus 184 ~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g 263 (354)
T 3nmw_A 184 KESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENN 263 (354)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcC
Confidence 678888899999999975655544554 89999999999997655 489999999999986 5666667777999
Q ss_pred hhhhhHhhhcCCchhHHHHHHHHHHhhc-chHHHHHhh
Q 001385 494 LRDLLMRLTVGPEPRVNKAAARALAILG-ENESLRRAI 530 (1088)
Q Consensus 494 ~~~~L~~ll~~~~~~v~~~a~~aL~~l~-~~~~~r~~~ 530 (1088)
+++.|+.++.+.+..++++|+|+|..+. .+++.+..+
T Consensus 264 ~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i 301 (354)
T 3nmw_A 264 CLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEAL 301 (354)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred CHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 9999999999999999999999999998 455555544
No 153
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.08 E-value=1.9e-10 Score=138.13 Aligned_cols=176 Identities=16% Similarity=0.257 Sum_probs=152.9
Q ss_pred hHHHhhhhcCCCCccccccccccccccceeeccCChhhhhhHHHHhccccCCchhh-HHHHHCCCcHHHHHHhccCChHH
Q 001385 347 ASALAKIMQDQENRVVVGKDENAVRQLISMISSDNRHVVEQACSALSSLAGDVSVA-MLLMKCDIMQPIIAVLKSFAPEE 425 (1088)
Q Consensus 347 ~~~L~~i~~l~~N~l~ip~~~~~Lp~L~~L~Ls~N~~v~~~a~~~L~~L~~~~~~~-~~l~~~~~~~~Ll~lL~~~~~~~ 425 (1088)
.+.+.++.....+...+...-+.+|.|..|.-+.+..+...++|+|.+|+.+.... ..+.+.|+++.|+.++.+.+...
T Consensus 211 ~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v 290 (510)
T 3ul1_B 211 TWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPI 290 (510)
T ss_dssp HHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHH
T ss_pred HHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhh
Confidence 45555554433332222222356788888888899999999999999999887777 77889999999999999999999
Q ss_pred HHHHHHHHHhhhccChHHHHHHhhhhhHHHHHHHhcCCChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcCC
Q 001385 426 VKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGP 505 (1088)
Q Consensus 426 ~~~~l~~L~~L~~~sd~~~~~v~~~g~lp~L~~Ll~~~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~~ 505 (1088)
+..++.+|.+++..++...+.+++.|+++.|..|+.+.+..+|+.|+++++|++.+...+.+.+.+.++++.|+.++.+.
T Consensus 291 ~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~ 370 (510)
T 3ul1_B 291 VTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA 370 (510)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSS
T ss_pred hhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCC
Confidence 99999999999989999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHhhcc
Q 001385 506 EPRVNKAAARALAILGE 522 (1088)
Q Consensus 506 ~~~v~~~a~~aL~~l~~ 522 (1088)
+.+++++|+|++.++..
T Consensus 371 ~~~v~~~Aa~aL~Nl~~ 387 (510)
T 3ul1_B 371 DFKTQKEAAWAITNYTS 387 (510)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHc
Confidence 99999999999999865
No 154
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.07 E-value=1.1e-11 Score=142.48 Aligned_cols=154 Identities=20% Similarity=0.101 Sum_probs=87.5
Q ss_pred CccccEEeCcCCCCCCCCcccc----cc-CCCCccEEEccCCCCCC--ccccccCCCCCcEEEccCCCCCC-----Cchh
Q 001385 148 LTRLMRSDLSTSGPGNNMGSGF----CD-HWKTVTAVSLCGLGLSA--LPVDLTRLPVLEKLYLDNNKLST-----LPPE 215 (1088)
Q Consensus 148 l~~L~~L~Ls~N~l~~~~~~~~----~~-~l~~L~~L~Ls~n~l~~--lp~~l~~l~~L~~L~L~~N~l~~-----lp~~ 215 (1088)
+++|+.|+|++|. +....... +. ...+|++|+|++|.|+. +..-...+.+|++|+|++|.|+. +...
T Consensus 71 ~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 71 LSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp HTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred HhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 3567777777777 33322222 21 22577777777777762 11112234567777777777762 1122
Q ss_pred h-cCCCCCcEEEccCCcCc-----ccchhccCCCCCCEEEeccCCCCCCc-----ccccCCccccEEEecCCCCCCC---
Q 001385 216 L-GAMKNLKVLIVDNNMLV-----CVPVELRECVGLVELSLEHNRLVRPL-----LDFRAMAELKILRLFGNPLEFL--- 281 (1088)
Q Consensus 216 l-~~l~~L~~L~Ls~N~l~-----~lp~~l~~l~~L~~L~Ls~N~l~~~~-----~~l~~l~~L~~L~Ls~N~l~~l--- 281 (1088)
+ ...++|++|+|++|.|+ .++..+..+++|++|+|++|.|+... ..+..+++|+.|+|++|.|+..
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~ 229 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL 229 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence 2 24566777777777765 34445566677777777777765422 2345556677777777666521
Q ss_pred ---ccccCCCCCCeEEeeCCCCCC
Q 001385 282 ---PEILPLLKLRHLSLANIRIVA 302 (1088)
Q Consensus 282 ---~~l~~l~~L~~L~L~~N~l~~ 302 (1088)
..+..+++|++|+|++|.|+.
T Consensus 230 ~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 230 ALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHHHhCCCCCEEeccCCCCCH
Confidence 123345666666666666553
No 155
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.06 E-value=5.4e-10 Score=120.77 Aligned_cols=157 Identities=20% Similarity=0.256 Sum_probs=142.5
Q ss_pred cccccccceeeccCChhhhhhHHHHhccccCCchhh-HHHHHCCCcHHHHHHhccCChHHHHHHHHHHHhhhccChHHHH
Q 001385 367 ENAVRQLISMISSDNRHVVEQACSALSSLAGDVSVA-MLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQ 445 (1088)
Q Consensus 367 ~~~Lp~L~~L~Ls~N~~v~~~a~~~L~~L~~~~~~~-~~l~~~~~~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd~~~~ 445 (1088)
.+.++.|..+.-+.++.+...++++|++++.+.... ..+++.|+++.++.++++++++.+..++.+|.+++...+....
T Consensus 53 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 132 (252)
T 4db8_A 53 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 132 (252)
T ss_dssp TTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHH
Confidence 367888888888888999999999999999866555 8899999999999999999899999999999999977666658
Q ss_pred HHhhhhhHHHHHHHhcCCChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcCCchhHHHHHHHHHHhhcch
Q 001385 446 KMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGEN 523 (1088)
Q Consensus 446 ~v~~~g~lp~L~~Ll~~~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 523 (1088)
.+++.|++|.|..++.+.+..++..|+++++|++.+.+...+.+.+.++++.|+.++.+.++.+++.|+++|..+...
T Consensus 133 ~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 210 (252)
T 4db8_A 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 210 (252)
T ss_dssp HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTS
T ss_pred HHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcC
Confidence 889999999999999999999999999999999998888877777899999999999999999999999999999743
No 156
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.05 E-value=4.7e-10 Score=120.79 Aligned_cols=156 Identities=22% Similarity=0.286 Sum_probs=143.8
Q ss_pred cccccccceeeccCChhhhhhHHHHhccccCCchhh-HHHHHCCCcHHHHHHhccCChHHHHHHHHHHHhhhccChHHHH
Q 001385 367 ENAVRQLISMISSDNRHVVEQACSALSSLAGDVSVA-MLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQ 445 (1088)
Q Consensus 367 ~~~Lp~L~~L~Ls~N~~v~~~a~~~L~~L~~~~~~~-~~l~~~~~~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd~~~~ 445 (1088)
.+.++.|..+.-+.+..+...++++|++++.+.... ..+.+.|+++.++.++++.+++.+..++.+|.+++..++....
T Consensus 43 ~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 122 (252)
T 4hxt_A 43 AGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK 122 (252)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 366888888888889999999999999999985555 8899999999999999998899999999999999987888888
Q ss_pred HHhhhhhHHHHHHHhcCCChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcCCchhHHHHHHHHHHhhcc
Q 001385 446 KMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGE 522 (1088)
Q Consensus 446 ~v~~~g~lp~L~~Ll~~~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~ 522 (1088)
.+++.|+++.|..++.+.++.++..|+++++|++.+.+...+.+.+.++++.|+.++.+.++.++..|++++..+..
T Consensus 123 ~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 199 (252)
T 4hxt_A 123 AIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS 199 (252)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHc
Confidence 89999999999999999999999999999999999888887777799999999999999999999999999999986
No 157
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.05 E-value=2.1e-10 Score=134.32 Aligned_cols=185 Identities=14% Similarity=0.121 Sum_probs=146.2
Q ss_pred hhHHHhhhhcCCC-CccccccccccccccceeeccCChhhhhhHHHHhccccCC-chhh-HHHHHCCCcHHHHHHh-ccC
Q 001385 346 LASALAKIMQDQE-NRVVVGKDENAVRQLISMISSDNRHVVEQACSALSSLAGD-VSVA-MLLMKCDIMQPIIAVL-KSF 421 (1088)
Q Consensus 346 l~~~L~~i~~l~~-N~l~ip~~~~~Lp~L~~L~Ls~N~~v~~~a~~~L~~L~~~-~~~~-~~l~~~~~~~~Ll~lL-~~~ 421 (1088)
.+|.|.++..... +...+...-+.+|.|..|.-+.++.+.+.++|+|++|+.. .... ..+.+.|++++|+.+| ...
T Consensus 220 Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~ 299 (458)
T 3nmz_A 220 AGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK 299 (458)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCC
T ss_pred HHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCC
Confidence 3677777764432 2112222334589999998899999999999999999974 3334 8889999999999975 455
Q ss_pred ChHHHHHHHHHHHhhhccChHHHHHHh-hhhhHHHHHHHhcCCCh----hHHHHHHHHHhhhhc---cccccceeecccC
Q 001385 422 APEEVKSVLQVVGQLAFASDTVAQKML-TKDVLKSLKLLCAHKNP----EVQRFALLAVGNLAF---CLENRRILVTSES 493 (1088)
Q Consensus 422 ~~~~~~~~l~~L~~L~~~sd~~~~~v~-~~g~lp~L~~Ll~~~~~----~vq~~Al~algnla~---~~~~~~~~v~~~~ 493 (1088)
+...+..++.+|.+|+.+++.....+. ..|++|.|+.++.+... .++..|++++.|++. +.++.++.+.++|
T Consensus 300 ~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G 379 (458)
T 3nmz_A 300 KESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENN 379 (458)
T ss_dssp SHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcc
Confidence 677888899999999975655444444 89999999999997655 489999999999986 6777777788999
Q ss_pred hhhhhHhhhcCCchhHHHHHHHHHHhhc-chHHHHHhh
Q 001385 494 LRDLLMRLTVGPEPRVNKAAARALAILG-ENESLRRAI 530 (1088)
Q Consensus 494 ~~~~L~~ll~~~~~~v~~~a~~aL~~l~-~~~~~r~~~ 530 (1088)
+++.|+.++.+.+..++++|+|+|..+. .+++.+..+
T Consensus 380 ~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i 417 (458)
T 3nmz_A 380 CLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEAL 417 (458)
T ss_dssp HHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred cHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999999999999999998 455554443
No 158
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.03 E-value=4.7e-10 Score=120.80 Aligned_cols=157 Identities=20% Similarity=0.259 Sum_probs=143.2
Q ss_pred cccccccceeeccCChhhhhhHHHHhccccCCchhh-HHHHHCCCcHHHHHHhccCChHHHHHHHHHHHhhhccChHHHH
Q 001385 367 ENAVRQLISMISSDNRHVVEQACSALSSLAGDVSVA-MLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQ 445 (1088)
Q Consensus 367 ~~~Lp~L~~L~Ls~N~~v~~~a~~~L~~L~~~~~~~-~~l~~~~~~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd~~~~ 445 (1088)
.+.++.|..+.-+.++.+...++++|++++...... ..+++.|+++.++.++.+.+++.+..++.+|.+++..++...+
T Consensus 85 ~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~ 164 (252)
T 4hxt_A 85 AGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK 164 (252)
T ss_dssp TTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 356788888887889999999999999999655555 8899999999999999999999999999999999988888788
Q ss_pred HHhhhhhHHHHHHHhcCCChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcCCchhHHHHHHHHHHhhcch
Q 001385 446 KMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGEN 523 (1088)
Q Consensus 446 ~v~~~g~lp~L~~Ll~~~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 523 (1088)
.+++.|+++.|..++.+.++.++..|+++++|++.+.....+.+.+.++++.|+.++.+.++++++.|++++..+...
T Consensus 165 ~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 242 (252)
T 4hxt_A 165 AIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSG 242 (252)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcC
Confidence 899999999999999999999999999999999998888887788999999999999999999999999999998765
No 159
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.00 E-value=7.7e-10 Score=136.86 Aligned_cols=165 Identities=14% Similarity=0.162 Sum_probs=137.3
Q ss_pred cccccccceeeccCChhhhhhHHHHhccccCCchhhHHHHHCCCcHHHHHHhccCChHHHHHHHHHH-------------
Q 001385 367 ENAVRQLISMISSDNRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVV------------- 433 (1088)
Q Consensus 367 ~~~Lp~L~~L~Ls~N~~v~~~a~~~L~~L~~~~~~~~~l~~~~~~~~Ll~lL~~~~~~~~~~~l~~L------------- 433 (1088)
.|.+|.|..|.-+.++.++++++|+|+||+.+......++++|++++|+.+|.+.....+..+.++|
T Consensus 494 aGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~ 573 (810)
T 3now_A 494 EGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSF 573 (810)
T ss_dssp TTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHT
T ss_pred CcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhh
Confidence 3779999999999999999999999999998766559999999999999999877654333333333
Q ss_pred --------------------------------HhhhccChHHHHHHhhhhhHHHHHHHhcCCChhHHHHHHHHHhhhhcc
Q 001385 434 --------------------------------GQLAFASDTVAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFC 481 (1088)
Q Consensus 434 --------------------------------~~L~~~sd~~~~~v~~~g~lp~L~~Ll~~~~~~vq~~Al~algnla~~ 481 (1088)
.+|+..++...+.+++.|++|+|+.|+.+.+..+|+.|+++++|++.+
T Consensus 574 ~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~ 653 (810)
T 3now_A 574 SGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMS 653 (810)
T ss_dssp TTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTS
T ss_pred cchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC
Confidence 334433344466788899999999999999999999999999999999
Q ss_pred ccccceeecccChhhhhHhhhcCCchhHHHHHHHHHHhhcc-hHHHHHhhh
Q 001385 482 LENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGE-NESLRRAIR 531 (1088)
Q Consensus 482 ~~~~~~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~-~~~~r~~~~ 531 (1088)
.+.+.+++...+.+++|+.++.+.+..++++|+|+|+++.. .+...+.+-
T Consensus 654 ~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii 704 (810)
T 3now_A 654 EDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKIL 704 (810)
T ss_dssp HHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred hHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 99998888557899999999999999999999999999987 454444443
No 160
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.99 E-value=5.5e-10 Score=126.78 Aligned_cols=179 Identities=13% Similarity=0.077 Sum_probs=146.4
Q ss_pred hhHHHhhhhcCCCCcc-ccccccccccccceeec-cCChhhhhhHHHHhccccCCchh-hHHHH-HCCCcHHHHHHhccC
Q 001385 346 LASALAKIMQDQENRV-VVGKDENAVRQLISMIS-SDNRHVVEQACSALSSLAGDVSV-AMLLM-KCDIMQPIIAVLKSF 421 (1088)
Q Consensus 346 l~~~L~~i~~l~~N~l-~ip~~~~~Lp~L~~L~L-s~N~~v~~~a~~~L~~L~~~~~~-~~~l~-~~~~~~~Ll~lL~~~ 421 (1088)
..++|.++....+... ......+.+|.|..+.+ +.+..+.+.++.+|.+|+.+... ...+. ..|+++.|+.+|...
T Consensus 147 A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~ 226 (354)
T 3nmw_A 147 IASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYR 226 (354)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCC
T ss_pred HHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccC
Confidence 3677777754321111 22334578999999754 46778999999999999985544 45555 789999999999876
Q ss_pred Ch----HHHHHHHHHHHhhhc---cChHHHHHHhhhhhHHHHHHHhcCCChhHHHHHHHHHhhhhccccccceeecccCh
Q 001385 422 AP----EEVKSVLQVVGQLAF---ASDTVAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESL 494 (1088)
Q Consensus 422 ~~----~~~~~~l~~L~~L~~---~sd~~~~~v~~~g~lp~L~~Ll~~~~~~vq~~Al~algnla~~~~~~~~~v~~~~~ 494 (1088)
.. +.+..+..+|.+++. .++...+.+.+.|++|.|+.++.+.+..+|+.|+++++|++.+.+++++.+.++|+
T Consensus 227 ~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~ 306 (354)
T 3nmw_A 227 SQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGA 306 (354)
T ss_dssp CSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTH
T ss_pred CCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCC
Confidence 54 467788889998885 57788889999999999999999999999999999999999887777777889999
Q ss_pred hhhhHhhhcCCchhHHHHHHHHHHhhcchH
Q 001385 495 RDLLMRLTVGPEPRVNKAAARALAILGENE 524 (1088)
Q Consensus 495 ~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 524 (1088)
++.|+.++.+.+++++++|+++|..+....
T Consensus 307 i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~ 336 (354)
T 3nmw_A 307 VSMLKNLIHSKHKMIAMGSAAALRNLMANR 336 (354)
T ss_dssp HHHHHTTTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999998663
No 161
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=98.96 E-value=1.4e-09 Score=128.64 Aligned_cols=161 Identities=16% Similarity=0.151 Sum_probs=139.5
Q ss_pred cccccceeeccCChhhhhhHHHHhccccCCchhh-HHHHHCCCcHHHHHHhccCChHHHHHHHHHHHhhhccChHHHHHH
Q 001385 369 AVRQLISMISSDNRHVVEQACSALSSLAGDVSVA-MLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKM 447 (1088)
Q Consensus 369 ~Lp~L~~L~Ls~N~~v~~~a~~~L~~L~~~~~~~-~~l~~~~~~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd~~~~~v 447 (1088)
.++.|..+.-+.++.++..++++|.+++.+.+.. ..+++.|+++.|+.+|++++++.+..+..+|.+|+..++.....+
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i 82 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 3566777777889999999999999999877666 689999999999999999999999999999999998778888899
Q ss_pred hhhhhHHHHHHHhc-CCChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhc--------C--------CchhHH
Q 001385 448 LTKDVLKSLKLLCA-HKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTV--------G--------PEPRVN 510 (1088)
Q Consensus 448 ~~~g~lp~L~~Ll~-~~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~--------~--------~~~~v~ 510 (1088)
++.|++|.|+.++. +.+..+|..|.++++|++.+.+++..++ + |+++.|+.++. + .++.+.
T Consensus 83 ~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~-~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~ 160 (457)
T 1xm9_A 83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELI-A-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF 160 (457)
T ss_dssp HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHH-H-HHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred HHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHH-h-ccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence 99999999999999 8899999999999999999966665554 7 99999999993 2 245677
Q ss_pred HHHHHHHHhhcchHHHHHhhh
Q 001385 511 KAAARALAILGENESLRRAIR 531 (1088)
Q Consensus 511 ~~a~~aL~~l~~~~~~r~~~~ 531 (1088)
+.|+|+|.++...++.+..+.
T Consensus 161 ~~a~~aL~nLs~~~~~~~~i~ 181 (457)
T 1xm9_A 161 FNATGCLRNLSSADAGRQTMR 181 (457)
T ss_dssp HHHHHHHHHHTTSHHHHHHHT
T ss_pred HHHHHHHHHHccCHHHHHHHH
Confidence 799999999998877777665
No 162
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.94 E-value=5.5e-09 Score=121.06 Aligned_cols=192 Identities=13% Similarity=0.124 Sum_probs=115.9
Q ss_pred hhhcCCCCCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCccccccCCC
Q 001385 118 MRVVKRREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLP 197 (1088)
Q Consensus 118 ~~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~ 197 (1088)
..+|.++ +|+.+.|..+ +...-..+|.++ +|+.+.|.++ +..+....|..+.+|+.++|.+|.++.++.....+.
T Consensus 129 ~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~~--l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~ 203 (401)
T 4fdw_A 129 KDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPST--LEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYA 203 (401)
T ss_dssp TTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCTT--CCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTC
T ss_pred HhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCCC--ccEehHHHhhCcccCCeeecCCCcceEechhhEeec
Confidence 3556654 6777777665 555444556664 5777777753 355555677777777777777777777776555567
Q ss_pred CCcEEEccCCCCCCCc-hhhcCCCCCcEEEccCCcCcccch-hccCCCCCCEEEeccCCCCCCcc-cccCCccccEEEec
Q 001385 198 VLEKLYLDNNKLSTLP-PELGAMKNLKVLIVDNNMLVCVPV-ELRECVGLVELSLEHNRLVRPLL-DFRAMAELKILRLF 274 (1088)
Q Consensus 198 ~L~~L~L~~N~l~~lp-~~l~~l~~L~~L~Ls~N~l~~lp~-~l~~l~~L~~L~Ls~N~l~~~~~-~l~~l~~L~~L~Ls 274 (1088)
+|+.+.|..+ ++.++ ..|.++++|+.+++..| ++.++. .|.+ .+|+.+.| .|.++.+.. .|.++++|+.+++.
T Consensus 204 ~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~ 279 (401)
T 4fdw_A 204 GIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTY 279 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEE
T ss_pred ccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeC
Confidence 7777777644 55444 45667777777777654 455544 3333 56777777 344544443 56777777777777
Q ss_pred CCCCC-----CCc--cccCCCCCCeEEeeCCCCCCCccccchhhhhcCcCCccccc
Q 001385 275 GNPLE-----FLP--EILPLLKLRHLSLANIRIVADENLRSVNVQIEMENNSYFGA 323 (1088)
Q Consensus 275 ~N~l~-----~l~--~l~~l~~L~~L~L~~N~l~~~~~l~~l~~~~~l~~l~~l~l 323 (1088)
+|.+. .++ .+..|++|+.++|.+ .++.++.- .+.++.+|+.+.+
T Consensus 280 ~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~----aF~~c~~L~~l~l 330 (401)
T 4fdw_A 280 GSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQG----LLGGNRKVTQLTI 330 (401)
T ss_dssp SSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTT----TTTTCCSCCEEEE
T ss_pred CccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhh----hhcCCCCccEEEE
Confidence 66554 222 456677777777763 34432111 1223555655555
No 163
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.94 E-value=2.1e-09 Score=122.24 Aligned_cols=106 Identities=26% Similarity=0.247 Sum_probs=53.8
Q ss_pred EEccCC-CCCCCchhhcCCCCCcEEEccC-CcCcccc-hhccCCCCCCEEEeccCCCCCCcc-cccCCccccEEEecCCC
Q 001385 202 LYLDNN-KLSTLPPELGAMKNLKVLIVDN-NMLVCVP-VELRECVGLVELSLEHNRLVRPLL-DFRAMAELKILRLFGNP 277 (1088)
Q Consensus 202 L~L~~N-~l~~lp~~l~~l~~L~~L~Ls~-N~l~~lp-~~l~~l~~L~~L~Ls~N~l~~~~~-~l~~l~~L~~L~Ls~N~ 277 (1088)
++++++ +|+.+|. |..+++|+.|+|++ |.|+.+| ..|.+|++|+.|+|++|+|+++++ .|.+|++|+.|+|++|+
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 344444 4444444 44444455555543 4554443 234555555555555555555443 34555555555555555
Q ss_pred CCCCc-cccCCCCCCeEEeeCCCCCCCccccc
Q 001385 278 LEFLP-EILPLLKLRHLSLANIRIVADENLRS 308 (1088)
Q Consensus 278 l~~l~-~l~~l~~L~~L~L~~N~l~~~~~l~~ 308 (1088)
|+.+| .+....+|+.|+|.+|.+.+.+.+..
T Consensus 92 l~~~~~~~~~~~~L~~l~l~~N~~~c~c~l~~ 123 (347)
T 2ifg_A 92 LESLSWKTVQGLSLQELVLSGNPLHCSCALRW 123 (347)
T ss_dssp CSCCCSTTTCSCCCCEEECCSSCCCCCGGGHH
T ss_pred cceeCHHHcccCCceEEEeeCCCccCCCccHH
Confidence 55333 22222236777777777776655544
No 164
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=98.93 E-value=2.5e-09 Score=113.31 Aligned_cols=161 Identities=12% Similarity=0.103 Sum_probs=137.6
Q ss_pred cccccceeeccCCh--hhhhhHHHHhccccCCchhh-HHHHHCCCcHHHHHHhccCChHHHHHHHHHHHhhhccChHHHH
Q 001385 369 AVRQLISMISSDNR--HVVEQACSALSSLAGDVSVA-MLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQ 445 (1088)
Q Consensus 369 ~Lp~L~~L~Ls~N~--~v~~~a~~~L~~L~~~~~~~-~~l~~~~~~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd~~~~ 445 (1088)
.++.|+.+.-+.++ .+...+.+.+.+++...... ..+.+.|++++|+.+|++.+++.+..+..+|.+|+..++....
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 46778888778887 78888999999999655444 8899999999999999999999999999999999988888888
Q ss_pred HHhhhhhHHHHHHHhc-CCChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhc----------------CCchh
Q 001385 446 KMLTKDVLKSLKLLCA-HKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTV----------------GPEPR 508 (1088)
Q Consensus 446 ~v~~~g~lp~L~~Ll~-~~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~----------------~~~~~ 508 (1088)
.+.+.|++|.|+.++. +.+..+|+.|..++.|++...+++..++ + +.++.|+.++. ..+.+
T Consensus 89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~-~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~ 166 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMI-T-EALLTLTENIIIPFSGWPEGDYPKANGLLDFD 166 (233)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHH-H-HHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHH-h-ccHHHHHHHHhccccCCcccccccccccchHH
Confidence 9999999999999998 5789999999999999999888887766 4 45677776542 23668
Q ss_pred HHHHHHHHHHhhcc-hHHHHHhhh
Q 001385 509 VNKAAARALAILGE-NESLRRAIR 531 (1088)
Q Consensus 509 v~~~a~~aL~~l~~-~~~~r~~~~ 531 (1088)
++++|..+|..++. +++.|+.++
T Consensus 167 v~~na~~~L~nLss~~~~~R~~~r 190 (233)
T 3tt9_A 167 IFYNVTGCLRNMSSAGADGRKAMR 190 (233)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHH
Confidence 99999999999987 568899887
No 165
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.92 E-value=2.4e-09 Score=118.31 Aligned_cols=140 Identities=19% Similarity=0.098 Sum_probs=125.3
Q ss_pred hhhhHHHHhccccCCchhhHHHHHCCCcHHHHH-HhccCChHHHHHHHHHHHhhhccChHHHHHHhhhhhHHHHHHHhcC
Q 001385 384 VVEQACSALSSLAGDVSVAMLLMKCDIMQPIIA-VLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAH 462 (1088)
Q Consensus 384 v~~~a~~~L~~L~~~~~~~~~l~~~~~~~~Ll~-lL~~~~~~~~~~~l~~L~~L~~~sd~~~~~v~~~g~lp~L~~Ll~~ 462 (1088)
-+..+...|.++.........+.+.|++++++. +|.+++++.+..++.+|++++..++...+.+++.|++|.|..|+.+
T Consensus 56 ~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~ 135 (296)
T 1xqr_A 56 EREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDR 135 (296)
T ss_dssp HHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHcc
Confidence 455677788888877776678899999999999 9999999999999999999998888888899999999999999995
Q ss_pred -CChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcCCchhHHHHHHHHHHhhcch
Q 001385 463 -KNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGEN 523 (1088)
Q Consensus 463 -~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 523 (1088)
.+..+++.|+++++|++.+.....+.+.++++++.|+.++.+.+..++++|||+++++...
T Consensus 136 ~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~ 197 (296)
T 1xqr_A 136 DACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG 197 (296)
T ss_dssp CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 5889999999999999998888777777899999999999999999999999999998754
No 166
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.92 E-value=6.9e-09 Score=120.25 Aligned_cols=202 Identities=11% Similarity=0.072 Sum_probs=128.5
Q ss_pred cchhhcCCCCCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCccc-ccc
Q 001385 116 VEMRVVKRREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPV-DLT 194 (1088)
Q Consensus 116 ~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~-~l~ 194 (1088)
+...+|.++ +|+.+.|.+ .+...-..+|.+|++|+.++|.+|. +.......|. +.+|+.+.|..+ ++.++. .|.
T Consensus 149 I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~-l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~ 223 (401)
T 4fdw_A 149 IGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTK-ITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFL 223 (401)
T ss_dssp ECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSC-CSEECTTTTT-TCCCSEEECCTT-CCEECTTTTT
T ss_pred ECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCc-ceEechhhEe-ecccCEEEeCCc-hheehhhHhh
Confidence 334566664 588888875 4655555678888888888888776 4555555564 578888888744 776664 466
Q ss_pred CCCCCcEEEccCCCCCCCch-hhcCCCCCcEEEccCCcCcccc-hhccCCCCCCEEEeccCCCC-----CCc-ccccCCc
Q 001385 195 RLPVLEKLYLDNNKLSTLPP-ELGAMKNLKVLIVDNNMLVCVP-VELRECVGLVELSLEHNRLV-----RPL-LDFRAMA 266 (1088)
Q Consensus 195 ~l~~L~~L~L~~N~l~~lp~-~l~~l~~L~~L~Ls~N~l~~lp-~~l~~l~~L~~L~Ls~N~l~-----~~~-~~l~~l~ 266 (1088)
++.+|+.+++..| ++.++. .|.+ .+|+.+.| .|.++.++ ..|.+|++|+.+++.+|.+. .+. ..|..|+
T Consensus 224 ~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~ 300 (401)
T 4fdw_A 224 KTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCP 300 (401)
T ss_dssp TCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCT
T ss_pred CCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCc
Confidence 7778888888764 554543 3444 67777777 34566554 36677778888887777664 222 2577777
Q ss_pred cccEEEecCCCCCCCc--cccCCCCCCeEEeeCCCCCCCccccchhhhhcCcCCccccccccchhhhH
Q 001385 267 ELKILRLFGNPLEFLP--EILPLLKLRHLSLANIRIVADENLRSVNVQIEMENNSYFGASRHKLSAFF 332 (1088)
Q Consensus 267 ~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~L~~N~l~~~~~l~~l~~~~~l~~l~~l~l~~n~l~~~~ 332 (1088)
+|+.++|. |.++.++ .+.+|.+|+.|+|..| ++....- .+.++ +|+.+.+..|.+..+.
T Consensus 301 ~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~----aF~~~-~L~~l~l~~n~~~~l~ 361 (401)
T 4fdw_A 301 KLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFS----AFNNT-GIKEVKVEGTTPPQVF 361 (401)
T ss_dssp TCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTT----SSSSS-CCCEEEECCSSCCBCC
T ss_pred cCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHH----hCCCC-CCCEEEEcCCCCcccc
Confidence 88888777 3466444 4667777888877554 4332111 12235 6667777666554433
No 167
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.91 E-value=2.5e-09 Score=121.64 Aligned_cols=100 Identities=26% Similarity=0.322 Sum_probs=61.2
Q ss_pred EEEccCC-CCCCccccccCCCCCcEEEccC-CCCCCCc-hhhcCCCCCcEEEccCCcCcccch-hccCCCCCCEEEeccC
Q 001385 178 AVSLCGL-GLSALPVDLTRLPVLEKLYLDN-NKLSTLP-PELGAMKNLKVLIVDNNMLVCVPV-ELRECVGLVELSLEHN 253 (1088)
Q Consensus 178 ~L~Ls~n-~l~~lp~~l~~l~~L~~L~L~~-N~l~~lp-~~l~~l~~L~~L~Ls~N~l~~lp~-~l~~l~~L~~L~Ls~N 253 (1088)
.++++++ .|+.+|. +..+.+|++|+|++ |.|+.+| ..|..|++|+.|+|++|+|+.++. .|.+|++|+.|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 3456665 6666666 66666666666664 6666554 346666666666666666664433 4566666666666666
Q ss_pred CCCCCccc-ccCCccccEEEecCCCCC
Q 001385 254 RLVRPLLD-FRAMAELKILRLFGNPLE 279 (1088)
Q Consensus 254 ~l~~~~~~-l~~l~~L~~L~Ls~N~l~ 279 (1088)
+|+++++. |..++ |+.|+|.+|.+.
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 66666543 33333 666666666665
No 168
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=98.90 E-value=1.4e-09 Score=127.36 Aligned_cols=178 Identities=13% Similarity=0.073 Sum_probs=145.2
Q ss_pred hhHHHhhhhcCCCCcc-ccccccccccccceeec-cCChhhhhhHHHHhccccCCc-hhhHHHH-HCCCcHHHHHHhccC
Q 001385 346 LASALAKIMQDQENRV-VVGKDENAVRQLISMIS-SDNRHVVEQACSALSSLAGDV-SVAMLLM-KCDIMQPIIAVLKSF 421 (1088)
Q Consensus 346 l~~~L~~i~~l~~N~l-~ip~~~~~Lp~L~~L~L-s~N~~v~~~a~~~L~~L~~~~-~~~~~l~-~~~~~~~Ll~lL~~~ 421 (1088)
..|+|.++....++.. ......+.++.|..|.+ +.+..+.+.++.+|.+|+.+. .....+. ..|+++.|+.+|...
T Consensus 263 A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~ 342 (458)
T 3nmz_A 263 IASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYR 342 (458)
T ss_dssp HHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCC
T ss_pred HHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCC
Confidence 3677777754321111 22334678999999754 457789999999999999844 4445555 799999999999876
Q ss_pred Ch----HHHHHHHHHHHhhhc---cChHHHHHHhhhhhHHHHHHHhcCCChhHHHHHHHHHhhhhccccccceeecccCh
Q 001385 422 AP----EEVKSVLQVVGQLAF---ASDTVAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESL 494 (1088)
Q Consensus 422 ~~----~~~~~~l~~L~~L~~---~sd~~~~~v~~~g~lp~L~~Ll~~~~~~vq~~Al~algnla~~~~~~~~~v~~~~~ 494 (1088)
.. +.+..+..+|.+++. .++...+.+.+.|++|.|+.++.+.+..+|+.|+++++|++.+...+++.+.++|+
T Consensus 343 ~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~ 422 (458)
T 3nmz_A 343 SQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGA 422 (458)
T ss_dssp CSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTH
T ss_pred CCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCC
Confidence 54 367888899999986 67888889999999999999999999999999999999999877777777789999
Q ss_pred hhhhHhhhcCCchhHHHHHHHHHHhhcch
Q 001385 495 RDLLMRLTVGPEPRVNKAAARALAILGEN 523 (1088)
Q Consensus 495 ~~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 523 (1088)
++.|+.++.+.+.++++.|+++|..+..+
T Consensus 423 I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~ 451 (458)
T 3nmz_A 423 VSMLKNLIHSKHKMIAMGSAAALRNLMAN 451 (458)
T ss_dssp HHHHHTTTTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999998765
No 169
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=98.87 E-value=1.7e-09 Score=133.68 Aligned_cols=185 Identities=18% Similarity=0.164 Sum_probs=144.9
Q ss_pred hhHHHhhhhcCCCCcccccc--ccccccccceeeccCCh-hhhhhHHHHhccccCCchhh-HHHHHCCCcHHHHHHhccC
Q 001385 346 LASALAKIMQDQENRVVVGK--DENAVRQLISMISSDNR-HVVEQACSALSSLAGDVSVA-MLLMKCDIMQPIIAVLKSF 421 (1088)
Q Consensus 346 l~~~L~~i~~l~~N~l~ip~--~~~~Lp~L~~L~Ls~N~-~v~~~a~~~L~~L~~~~~~~-~~l~~~~~~~~Ll~lL~~~ 421 (1088)
.+|+|.++....++...+.. ..+.+|.|..|.-++.. ....+++++|.||+...... ..+++.|+++.|+.++.+.
T Consensus 556 Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~ 635 (810)
T 3now_A 556 ATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMED 635 (810)
T ss_dssp HHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSC
T ss_pred HHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCC
Confidence 46777777543332221211 23568888887654423 33468999999999987655 8899999999999999998
Q ss_pred ChHHHHHHHHHHHhhhccChHHHHHHhhhhhHHHHHHHhcCCChhHHHHHHHHHhhhhccccccceeecc-cChhhhhHh
Q 001385 422 APEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTS-ESLRDLLMR 500 (1088)
Q Consensus 422 ~~~~~~~~l~~L~~L~~~sd~~~~~v~~~g~lp~L~~Ll~~~~~~vq~~Al~algnla~~~~~~~~~v~~-~~~~~~L~~ 500 (1088)
.+..+..++.+|.+++.+.+...+.+...|+++.|+.|+.+.+..+|+.|+++++|++.+.+.+.+.+++ +++++.|+.
T Consensus 636 ~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~ 715 (810)
T 3now_A 636 HLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHT 715 (810)
T ss_dssp CTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHH
Confidence 8899999999999999766544444423799999999999999999999999999999977666666667 899999999
Q ss_pred hhcCCchhHHHHHHHHHHhhcch-HHHHHhh
Q 001385 501 LTVGPEPRVNKAAARALAILGEN-ESLRRAI 530 (1088)
Q Consensus 501 ll~~~~~~v~~~a~~aL~~l~~~-~~~r~~~ 530 (1088)
++.+.+.++++.|+|++.++... .+..+.+
T Consensus 716 LL~s~d~~vq~~A~~aL~NL~~~s~e~~~~l 746 (810)
T 3now_A 716 LIANPSPAVQHRGIVIILNMINAGEEIAKKL 746 (810)
T ss_dssp HHTCSSHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHCCCCHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 99999999999999999998753 3334333
No 170
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=98.86 E-value=8.1e-09 Score=124.55 Aligned_cols=176 Identities=18% Similarity=0.257 Sum_probs=152.1
Q ss_pred hHHHhhhhcCCCCccccccccccccccceeeccCChhhhhhHHHHhccccCCchhh-HHHHHCCCcHHHHHHhccCChHH
Q 001385 347 ASALAKIMQDQENRVVVGKDENAVRQLISMISSDNRHVVEQACSALSSLAGDVSVA-MLLMKCDIMQPIIAVLKSFAPEE 425 (1088)
Q Consensus 347 ~~~L~~i~~l~~N~l~ip~~~~~Lp~L~~L~Ls~N~~v~~~a~~~L~~L~~~~~~~-~~l~~~~~~~~Ll~lL~~~~~~~ 425 (1088)
.+.|.++.....+.. .....+.++.|..+.-+.+..+...++++|++++...... ..+++.|+++.++.+|.+..+..
T Consensus 224 ~~~L~~L~~~~~~~~-~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v 302 (528)
T 4b8j_A 224 TWTLSNFCRGKPQPS-FEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSV 302 (528)
T ss_dssp HHHHHHHHCSSSCCC-HHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHcCCCCCc-HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhH
Confidence 566666654432211 1122456788888888889999999999999999887776 78889999999999999998888
Q ss_pred HHHHHHHHHhhhccChHHHHHHhhhhhHHHHHHHhcCC-ChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcC
Q 001385 426 VKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHK-NPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVG 504 (1088)
Q Consensus 426 ~~~~l~~L~~L~~~sd~~~~~v~~~g~lp~L~~Ll~~~-~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~ 504 (1088)
+..++.+|.+++..++...+.+++.|++|.|..++.+. +..++..|+++++|++.+...+.+.+.+.++++.|+.++..
T Consensus 303 ~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~ 382 (528)
T 4b8j_A 303 LIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQT 382 (528)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhc
Confidence 89999999999988888888999999999999999998 99999999999999999888877778889999999999999
Q ss_pred CchhHHHHHHHHHHhhcch
Q 001385 505 PEPRVNKAAARALAILGEN 523 (1088)
Q Consensus 505 ~~~~v~~~a~~aL~~l~~~ 523 (1088)
.+.+++++|++++..+...
T Consensus 383 ~~~~v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 383 AEFDIKKEAAWAISNATSG 401 (528)
T ss_dssp SCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcC
Confidence 9999999999999999765
No 171
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=98.80 E-value=2e-08 Score=118.00 Aligned_cols=177 Identities=19% Similarity=0.206 Sum_probs=147.5
Q ss_pred hHHHhhhhcCCCCccccccccccccccceeeccCChhhhhhHHHHhccccCCchhh-HHHHHCCCcHHHHHHhccCChHH
Q 001385 347 ASALAKIMQDQENRVVVGKDENAVRQLISMISSDNRHVVEQACSALSSLAGDVSVA-MLLMKCDIMQPIIAVLKSFAPEE 425 (1088)
Q Consensus 347 ~~~L~~i~~l~~N~l~ip~~~~~Lp~L~~L~Ls~N~~v~~~a~~~L~~L~~~~~~~-~~l~~~~~~~~Ll~lL~~~~~~~ 425 (1088)
.+.+.++..............+.++.|..+.-+.+..+...++++|++++...... ..+.+.++++.++.++.+.+++.
T Consensus 171 ~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v 250 (450)
T 2jdq_A 171 VWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKV 250 (450)
T ss_dssp HHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHH
T ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhH
Confidence 45566665432111111111356777888777888999999999999999876555 77888999999999999888888
Q ss_pred HHHHHHHHHhhhccChHHHHHHhhhhhHHHHHHHhcCCChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcCC
Q 001385 426 VKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGP 505 (1088)
Q Consensus 426 ~~~~l~~L~~L~~~sd~~~~~v~~~g~lp~L~~Ll~~~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~~ 505 (1088)
+..++.+|.+++..++...+.+++.|+++.|..++.+.+..++..|+++++|++.+.....+.+.+.++++.|+.++.+.
T Consensus 251 ~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~ 330 (450)
T 2jdq_A 251 VSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTA 330 (450)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC
Confidence 89999999999988888788889999999999999999999999999999999988877777777889999999999999
Q ss_pred chhHHHHHHHHHHhhcch
Q 001385 506 EPRVNKAAARALAILGEN 523 (1088)
Q Consensus 506 ~~~v~~~a~~aL~~l~~~ 523 (1088)
+++++++|+|++..+...
T Consensus 331 ~~~v~~~a~~~L~~l~~~ 348 (450)
T 2jdq_A 331 EFRTRKEAAWAITNATSG 348 (450)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcC
Confidence 999999999999998753
No 172
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=98.78 E-value=1.6e-08 Score=121.07 Aligned_cols=162 Identities=14% Similarity=0.083 Sum_probs=139.9
Q ss_pred ccccccceeeccCChhhhhhHHHHhccccCCchhh-HHHHHCCCcHHHHHHhccCChHHHHHHHHHHHhhhcc-ChHHHH
Q 001385 368 NAVRQLISMISSDNRHVVEQACSALSSLAGDVSVA-MLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFA-SDTVAQ 445 (1088)
Q Consensus 368 ~~Lp~L~~L~Ls~N~~v~~~a~~~L~~L~~~~~~~-~~l~~~~~~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~-sd~~~~ 445 (1088)
..++.|+.+.-+.+..++..++++|.+|+...... ..+++.|++++|+.+|.+.+.+.+..+..+|.+|+.. ++....
T Consensus 48 ~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~ 127 (584)
T 3l6x_A 48 PELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKI 127 (584)
T ss_dssp CCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHH
T ss_pred ccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHH
Confidence 56888888888999999999999999999755555 8899999999999999999999999999999999985 577888
Q ss_pred HHhhhhhHHHHHHHhcC-CChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhc------------------CCc
Q 001385 446 KMLTKDVLKSLKLLCAH-KNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTV------------------GPE 506 (1088)
Q Consensus 446 ~v~~~g~lp~L~~Ll~~-~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~------------------~~~ 506 (1088)
.+.+.|++|.|+.|+.+ .+..+|..|..++.|++.+.+++..++ . ++++.|+.++. ..+
T Consensus 128 ~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~-~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d 205 (584)
T 3l6x_A 128 AIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIV-D-HALHALTDEVIIPHSGWEREPNEDCKPRHIEW 205 (584)
T ss_dssp HHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHH-H-HTHHHHHHHTHHHHHCCC----------CCCC
T ss_pred HHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHH-h-ccHHHHHHHHhccccccccccccccccccccc
Confidence 89999999999999997 678899999999999999888888877 4 46788888761 235
Q ss_pred hhHHHHHHHHHHhhcchH-HHHHhhh
Q 001385 507 PRVNKAAARALAILGENE-SLRRAIR 531 (1088)
Q Consensus 507 ~~v~~~a~~aL~~l~~~~-~~r~~~~ 531 (1088)
+.+++.|+++|.+++... +.|+.+.
T Consensus 206 ~~V~~nAa~~L~NLs~~~~~~R~~i~ 231 (584)
T 3l6x_A 206 ESVLTNTAGCLRNVSSERSEARRKLR 231 (584)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 789999999999998764 5577765
No 173
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=98.77 E-value=1.7e-08 Score=121.80 Aligned_cols=177 Identities=19% Similarity=0.221 Sum_probs=149.2
Q ss_pred hHHHhhhhcCCCCccccccccccccccceeeccCChhhhhhHHHHhccccCCchhh-HHHHHCCCcHHHHHHhccCChHH
Q 001385 347 ASALAKIMQDQENRVVVGKDENAVRQLISMISSDNRHVVEQACSALSSLAGDVSVA-MLLMKCDIMQPIIAVLKSFAPEE 425 (1088)
Q Consensus 347 ~~~L~~i~~l~~N~l~ip~~~~~Lp~L~~L~Ls~N~~v~~~a~~~L~~L~~~~~~~-~~l~~~~~~~~Ll~lL~~~~~~~ 425 (1088)
.++|.++..............+.++.|..+.-+.+..+...++++|++|+...... ..+++.++++.|+.++.+.+...
T Consensus 236 ~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v 315 (530)
T 1wa5_B 236 TWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLV 315 (530)
T ss_dssp HHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHH
T ss_pred HHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhh
Confidence 56666665443111122222356788888877888999999999999999876655 78889999999999999888888
Q ss_pred HHHHHHHHHhhhccChHHHHHHhhhhhHHHHHHHhcCCChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcCC
Q 001385 426 VKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGP 505 (1088)
Q Consensus 426 ~~~~l~~L~~L~~~sd~~~~~v~~~g~lp~L~~Ll~~~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~~ 505 (1088)
+..++.+|.+++..++...+.+++.|++|.|..++.+.+..++..|+++++|++.+.....+.+++.++++.|+.++...
T Consensus 316 ~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~ 395 (530)
T 1wa5_B 316 QTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVA 395 (530)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC
Confidence 89999999999988888888899999999999999999999999999999999988777666677889999999999999
Q ss_pred chhHHHHHHHHHHhhcch
Q 001385 506 EPRVNKAAARALAILGEN 523 (1088)
Q Consensus 506 ~~~v~~~a~~aL~~l~~~ 523 (1088)
+++++++|+|++..+...
T Consensus 396 ~~~v~~~a~~aL~~l~~~ 413 (530)
T 1wa5_B 396 EYKTKKEACWAISNASSG 413 (530)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhc
Confidence 999999999999998653
No 174
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=98.74 E-value=1.9e-08 Score=106.55 Aligned_cols=120 Identities=16% Similarity=0.174 Sum_probs=105.3
Q ss_pred cHHHHHHhccCCh--HHHHHHHHHHHhhhccChHHHHHHhhhhhHHHHHHHhcCCChhHHHHHHHHHhhhhcccccccee
Q 001385 411 MQPIIAVLKSFAP--EEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRIL 488 (1088)
Q Consensus 411 ~~~Ll~lL~~~~~--~~~~~~l~~L~~L~~~sd~~~~~v~~~g~lp~L~~Ll~~~~~~vq~~Al~algnla~~~~~~~~~ 488 (1088)
++.++.+|.+.++ +.+..+..+|.++++.++.....+++.|++|.|+.++.+.+..+|..|+++++|++.+++..+..
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~ 89 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLE 89 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 5688899988887 77788889999999988888999999999999999999999999999999999999986655666
Q ss_pred ecccChhhhhHhhhc-CCchhHHHHHHHHHHhhcchHHHHHhh
Q 001385 489 VTSESLRDLLMRLTV-GPEPRVNKAAARALAILGENESLRRAI 530 (1088)
Q Consensus 489 v~~~~~~~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~~r~~~ 530 (1088)
+.++|+++.|+.++. +.+.++++.|+.+|..++..+..+..+
T Consensus 90 I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i 132 (233)
T 3tt9_A 90 VAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLM 132 (233)
T ss_dssp HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHH
T ss_pred HHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHH
Confidence 679999999999997 578899999998888888777666544
No 175
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=98.71 E-value=2.5e-08 Score=119.35 Aligned_cols=161 Identities=15% Similarity=0.134 Sum_probs=135.4
Q ss_pred cccceee-ccCChhhhhhHHHHhccccCCch----hh-HHHHHCCCcHHHHHHhccCChHHHHHHHHHHHhhhccChHHH
Q 001385 371 RQLISMI-SSDNRHVVEQACSALSSLAGDVS----VA-MLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVA 444 (1088)
Q Consensus 371 p~L~~L~-Ls~N~~v~~~a~~~L~~L~~~~~----~~-~~l~~~~~~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd~~~ 444 (1088)
+.|..|. -+.++.+.+.++++|.+|+.... .. ..+.+.++++.|+.+|...+...+..+..+|.+|+.+.+ .
T Consensus 311 ~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~--~ 388 (584)
T 3l6x_A 311 RIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDAR--N 388 (584)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCS--C
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChh--H
Confidence 3444444 35788999999999999986542 22 345567889999999999999999999999999997654 3
Q ss_pred HHHhhhhhHHHHHHHhcCC--------ChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcCC--chhHHHHHH
Q 001385 445 QKMLTKDVLKSLKLLCAHK--------NPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGP--EPRVNKAAA 514 (1088)
Q Consensus 445 ~~v~~~g~lp~L~~Ll~~~--------~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~~--~~~v~~~a~ 514 (1088)
+.++..|++|.|+.||.+. ...++..|+++++|++.++...++.+.+++.++.|+.++.+. .+.+.+.|+
T Consensus 389 ~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa 468 (584)
T 3l6x_A 389 KELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAA 468 (584)
T ss_dssp HHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHH
Confidence 4466899999999999986 356788999999999999988899999999999999999876 889999999
Q ss_pred HHHHhhcchHHHHHhhhcC
Q 001385 515 RALAILGENESLRRAIRGR 533 (1088)
Q Consensus 515 ~aL~~l~~~~~~r~~~~~~ 533 (1088)
++|..+..+.++++.+++.
T Consensus 469 ~vL~nl~~~~elr~~~kk~ 487 (584)
T 3l6x_A 469 LVLQTIWGYKELRKPLEKE 487 (584)
T ss_dssp HHHHHHHTSHHHHHHHHTT
T ss_pred HHHHHHHcCHHHHHHHHHc
Confidence 9999999999999998864
No 176
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=98.68 E-value=1.9e-08 Score=121.23 Aligned_cols=176 Identities=15% Similarity=0.143 Sum_probs=146.3
Q ss_pred hHHHhhhhcCCCCccccccccccccccceee-ccCChhhhhhHHHHhccccCCchhhHHHHHCCCcHHHHHHhccCChHH
Q 001385 347 ASALAKIMQDQENRVVVGKDENAVRQLISMI-SSDNRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAPEE 425 (1088)
Q Consensus 347 ~~~L~~i~~l~~N~l~ip~~~~~Lp~L~~L~-Ls~N~~v~~~a~~~L~~L~~~~~~~~~l~~~~~~~~Ll~lL~~~~~~~ 425 (1088)
.++|.++..............+.++.|..+. -+.+..+...++|+|++|+...+........++++.|+.++.+.+++.
T Consensus 181 ~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v 260 (528)
T 4b8j_A 181 VWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEV 260 (528)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHH
T ss_pred HHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHH
Confidence 5666666533211111112235677777766 456788999999999999987655555567899999999999999999
Q ss_pred HHHHHHHHHhhhccChHHHHHHhhhhhHHHHHHHhcCCChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcCC
Q 001385 426 VKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGP 505 (1088)
Q Consensus 426 ~~~~l~~L~~L~~~sd~~~~~v~~~g~lp~L~~Ll~~~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~~ 505 (1088)
+..++.+|.+++...+...+.+++.|++|.|+.++.+.+..++..|+++++|++.+.+..++.+++.++++.|+.++.+.
T Consensus 261 ~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~ 340 (528)
T 4b8j_A 261 LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQN 340 (528)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCC
Confidence 99999999999988777788899999999999999999999999999999999999988888888999999999999988
Q ss_pred -chhHHHHHHHHHHhhcc
Q 001385 506 -EPRVNKAAARALAILGE 522 (1088)
Q Consensus 506 -~~~v~~~a~~aL~~l~~ 522 (1088)
++.++++|+|++..++.
T Consensus 341 ~~~~v~~~A~~~L~nl~~ 358 (528)
T 4b8j_A 341 LKKSIKKEACWTISNITA 358 (528)
T ss_dssp CCHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHC
Confidence 99999999999999975
No 177
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=98.66 E-value=4.8e-08 Score=117.86 Aligned_cols=155 Identities=19% Similarity=0.226 Sum_probs=138.8
Q ss_pred ccccccceeeccCChhhhhhHHHHhccccCCc-hhhHHHHHCCCcHHHHHHhccCChHHHHHHHHHHHhhhccChHHHHH
Q 001385 368 NAVRQLISMISSDNRHVVEQACSALSSLAGDV-SVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQK 446 (1088)
Q Consensus 368 ~~Lp~L~~L~Ls~N~~v~~~a~~~L~~L~~~~-~~~~~l~~~~~~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd~~~~~ 446 (1088)
+.++.|..+.-+.+..+...++++|++|+.+. .........++++.|+.++.+.+++.+..++.+|.+++..++...+.
T Consensus 215 ~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~ 294 (530)
T 1wa5_B 215 NAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQA 294 (530)
T ss_dssp TCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred CcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 56777877777788889999999999999765 44456667899999999999888888899999999999777777888
Q ss_pred HhhhhhHHHHHHHhcCCChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcCCchhHHHHHHHHHHhhcc
Q 001385 447 MLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGE 522 (1088)
Q Consensus 447 v~~~g~lp~L~~Ll~~~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~ 522 (1088)
+++.|++|.|..++.+.+..++..|+++++|++.+.+...+.+.+.++++.|+.++.+.+..++++|+|++..++.
T Consensus 295 ~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~ 370 (530)
T 1wa5_B 295 VIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITA 370 (530)
T ss_dssp HHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 8999999999999999999999999999999999988888888889999999999999999999999999999985
No 178
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.64 E-value=9.9e-09 Score=116.91 Aligned_cols=62 Identities=10% Similarity=0.050 Sum_probs=32.0
Q ss_pred CCCCCCEEEeccCCCCCCc-cc---ccCCccccEEEecCCCCCC-----Cc-cccCCCCCCeEEeeCCCCCC
Q 001385 241 ECVGLVELSLEHNRLVRPL-LD---FRAMAELKILRLFGNPLEF-----LP-EILPLLKLRHLSLANIRIVA 302 (1088)
Q Consensus 241 ~l~~L~~L~Ls~N~l~~~~-~~---l~~l~~L~~L~Ls~N~l~~-----l~-~l~~l~~L~~L~L~~N~l~~ 302 (1088)
.+++|+.|+|.+|.+.... .. ...+++|++|+|+.|.|+. +. .+.++++|+.|+|++|.|+.
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 3556666666665554321 11 1235566666666666552 11 22345666666666666553
No 179
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.64 E-value=2.8e-08 Score=113.20 Aligned_cols=134 Identities=16% Similarity=0.121 Sum_probs=63.1
Q ss_pred ccCCCCCcEEEccCCCCCCCchhhcCCCCCcEEEccCCcCc-ccchhc--cCCCCCCEEEecc--CCCC------CCccc
Q 001385 193 LTRLPVLEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNMLV-CVPVEL--RECVGLVELSLEH--NRLV------RPLLD 261 (1088)
Q Consensus 193 l~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~Ls~N~l~-~lp~~l--~~l~~L~~L~Ls~--N~l~------~~~~~ 261 (1088)
+..+++|+.|+|++|.-..++. + .+++|+.|+|..|.++ .....+ ..+++|++|+|+. |... .+.+.
T Consensus 168 l~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~ 245 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL 245 (362)
T ss_dssp HHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG
T ss_pred HhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH
Confidence 3344555555555442112222 2 2455555555555544 111122 2455666665542 1111 11111
Q ss_pred c--cCCccccEEEecCCCCCC--Ccc---ccCCCCCCeEEeeCCCCCCCc--cccchhhhhcCcCCccccccccchhh
Q 001385 262 F--RAMAELKILRLFGNPLEF--LPE---ILPLLKLRHLSLANIRIVADE--NLRSVNVQIEMENNSYFGASRHKLSA 330 (1088)
Q Consensus 262 l--~~l~~L~~L~Ls~N~l~~--l~~---l~~l~~L~~L~L~~N~l~~~~--~l~~l~~~~~l~~l~~l~l~~n~l~~ 330 (1088)
+ ..+++|++|+|++|.+.. ... ...+++|++|+|+.|.+.... .+.. ....+++|+.|+++.|.++.
T Consensus 246 l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~--~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLD--HVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHT--THHHHTTCSEEECCSBBCCH
T ss_pred HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHh--hcccCCcceEEECCCCcCCH
Confidence 2 245677777777776651 111 124567777777777665421 1111 00135667777777776654
No 180
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=98.59 E-value=7.7e-08 Score=113.69 Aligned_cols=174 Identities=18% Similarity=0.155 Sum_probs=136.5
Q ss_pred hHHHhhhhcCCCCccccccccccccccceeeccCChhhhhhHHHHhccccCCchhh-HHHHHCCCcHHHHHHhc-cCChH
Q 001385 347 ASALAKIMQDQENRVVVGKDENAVRQLISMISSDNRHVVEQACSALSSLAGDVSVA-MLLMKCDIMQPIIAVLK-SFAPE 424 (1088)
Q Consensus 347 ~~~L~~i~~l~~N~l~ip~~~~~Lp~L~~L~Ls~N~~v~~~a~~~L~~L~~~~~~~-~~l~~~~~~~~Ll~lL~-~~~~~ 424 (1088)
.+.+.++.....+........+.+|.|..+.-+.++.++..++++|.+|+.+.+.. ..+++.|+++.++.+|. +.+++
T Consensus 23 ~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~ 102 (457)
T 1xm9_A 23 AYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAE 102 (457)
T ss_dssp HHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHH
T ss_pred HHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHH
Confidence 44555654322221223335678999999988999999999999999999985555 88889999999999998 77888
Q ss_pred HHHHHHHHHHhhhccChHHHHHHhhhhhHHHHHHHhc--------C--------CChhHHHHHHHHHhhhhcccccccee
Q 001385 425 EVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCA--------H--------KNPEVQRFALLAVGNLAFCLENRRIL 488 (1088)
Q Consensus 425 ~~~~~l~~L~~L~~~sd~~~~~v~~~g~lp~L~~Ll~--------~--------~~~~vq~~Al~algnla~~~~~~~~~ 488 (1088)
.+..+..+|.+++.+ +.....+++ |++|.|..++. + .+..+++.|+++++|++.+.+++. .
T Consensus 103 ~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~-~ 179 (457)
T 1xm9_A 103 IQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQ-T 179 (457)
T ss_dssp HHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHH-H
T ss_pred HHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHH-H
Confidence 889999999999966 556666788 99999999992 2 245677899999999998855444 4
Q ss_pred eccc-ChhhhhHhhhcC------CchhHHHHHHHHHHhhcch
Q 001385 489 VTSE-SLRDLLMRLTVG------PEPRVNKAAARALAILGEN 523 (1088)
Q Consensus 489 v~~~-~~~~~L~~ll~~------~~~~v~~~a~~aL~~l~~~ 523 (1088)
+.++ |+++.|+.++.+ .+.++.+.+.+++..+.+.
T Consensus 180 i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~ 221 (457)
T 1xm9_A 180 MRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYR 221 (457)
T ss_dssp HTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTT
T ss_pred HHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccc
Confidence 5576 999999998875 4567888888888888754
No 181
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=98.58 E-value=6.4e-08 Score=113.69 Aligned_cols=158 Identities=13% Similarity=0.173 Sum_probs=138.1
Q ss_pred ccccccceeeccCChhhhhhHHHHhccccCCchhh-HHHHHCCCcHHHHHHhccCChHHHHHHHHHHHhhhccChHHHHH
Q 001385 368 NAVRQLISMISSDNRHVVEQACSALSSLAGDVSVA-MLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQK 446 (1088)
Q Consensus 368 ~~Lp~L~~L~Ls~N~~v~~~a~~~L~~L~~~~~~~-~~l~~~~~~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd~~~~~ 446 (1088)
+.++.|..+.-+.+..+...++++|++++...... ..+++.|+++.++.++.+.++..+..++.+|.+++.+++...+.
T Consensus 234 ~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~ 313 (450)
T 2jdq_A 234 GVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQT 313 (450)
T ss_dssp TTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 45777777777788999999999999999877666 77888999999999999888888889999999999878888888
Q ss_pred HhhhhhHHHHHHHhcCCChhHHHHHHHHHhhhhcc-ccccceeecccChhhhhHhhhcCCchhHHHHHHHHHHhhcchHH
Q 001385 447 MLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFC-LENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGENES 525 (1088)
Q Consensus 447 v~~~g~lp~L~~Ll~~~~~~vq~~Al~algnla~~-~~~~~~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 525 (1088)
+++.|++|.|..++.+.++.+|..|+++++|++.+ .....+.+.+.++++.|+.++...+.++++.+++++..+.....
T Consensus 314 ~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 393 (450)
T 2jdq_A 314 VIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGE 393 (450)
T ss_dssp HHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhch
Confidence 89999999999999999999999999999999876 44445545588999999999999999999999999999876543
No 182
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.48 E-value=4.8e-08 Score=100.41 Aligned_cols=13 Identities=8% Similarity=-0.031 Sum_probs=5.5
Q ss_pred CCCCeEEeeCCCC
Q 001385 288 LKLRHLSLANIRI 300 (1088)
Q Consensus 288 ~~L~~L~L~~N~l 300 (1088)
++|++|+|++|.+
T Consensus 151 ~~L~~L~L~~n~i 163 (185)
T 1io0_A 151 TTLLKFGYHFTQQ 163 (185)
T ss_dssp SSCCEEECCCSSH
T ss_pred CCcCEEeccCCCC
Confidence 3444444444433
No 183
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.43 E-value=6.6e-08 Score=99.36 Aligned_cols=42 Identities=12% Similarity=0.048 Sum_probs=22.4
Q ss_pred hhcCCCCCccEEEeeCC-CCCCC----CccccccCccccEEeCcCCC
Q 001385 119 RVVKRREPLRAVVLTKG-VGSGH----LSDGIGVLTRLMRSDLSTSG 160 (1088)
Q Consensus 119 ~~~~~l~~L~~L~Ls~n-~i~~~----~p~~l~~l~~L~~L~Ls~N~ 160 (1088)
..+...+.|++|+|++| .+... +...+...++|++|+|++|.
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~ 76 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR 76 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC
Confidence 45556666667777666 55432 22333444455555555554
No 184
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=98.41 E-value=4.5e-07 Score=112.06 Aligned_cols=164 Identities=14% Similarity=0.194 Sum_probs=139.3
Q ss_pred cccccccceeeccCChhhhhhHHHHhccccCCchhhHHHHHC-CCcHHHHHHhccC-ChHHHHHHHHHHHhhhccChHHH
Q 001385 367 ENAVRQLISMISSDNRHVVEQACSALSSLAGDVSVAMLLMKC-DIMQPIIAVLKSF-APEEVKSVLQVVGQLAFASDTVA 444 (1088)
Q Consensus 367 ~~~Lp~L~~L~Ls~N~~v~~~a~~~L~~L~~~~~~~~~l~~~-~~~~~Ll~lL~~~-~~~~~~~~l~~L~~L~~~sd~~~ 444 (1088)
.+.++.|..|.-+.++.+++.++.+|++++.+......++.. ++++.++..|.+. +++.+..++.+|.+|+... ...
T Consensus 13 ~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~-~~~ 91 (644)
T 2z6h_A 13 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR-EGL 91 (644)
T ss_dssp TTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSH-HHH
T ss_pred hchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCh-hhH
Confidence 356788888877899999999999999999887665556554 8899999999865 6788888999999988654 477
Q ss_pred HHHhhhhhHHHHHHHhcCCChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcCCchhHHHHHHHHHHhhcc-h
Q 001385 445 QKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGE-N 523 (1088)
Q Consensus 445 ~~v~~~g~lp~L~~Ll~~~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~-~ 523 (1088)
..+++.|++|.|+.++.+.+..+|..|+++++|++...+..+..+.+.++++.|+.++.+.+.+++..++.+|..++. +
T Consensus 92 ~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~ 171 (644)
T 2z6h_A 92 LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 171 (644)
T ss_dssp HHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcC
Confidence 788899999999999999999999999999999999887777777789999999999999999899888889998885 5
Q ss_pred HHHHHhhh
Q 001385 524 ESLRRAIR 531 (1088)
Q Consensus 524 ~~~r~~~~ 531 (1088)
++.+..+.
T Consensus 172 ~~~~~~i~ 179 (644)
T 2z6h_A 172 QESKLIIL 179 (644)
T ss_dssp HHHHHHHH
T ss_pred cHHHHHHH
Confidence 56555544
No 185
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=98.40 E-value=4.5e-07 Score=108.92 Aligned_cols=164 Identities=13% Similarity=0.187 Sum_probs=138.7
Q ss_pred cccccccceeeccCChhhhhhHHHHhccccCCchhhHHHHHC-CCcHHHHHHhccC-ChHHHHHHHHHHHhhhccChHHH
Q 001385 367 ENAVRQLISMISSDNRHVVEQACSALSSLAGDVSVAMLLMKC-DIMQPIIAVLKSF-APEEVKSVLQVVGQLAFASDTVA 444 (1088)
Q Consensus 367 ~~~Lp~L~~L~Ls~N~~v~~~a~~~L~~L~~~~~~~~~l~~~-~~~~~Ll~lL~~~-~~~~~~~~l~~L~~L~~~sd~~~ 444 (1088)
.+.++.|..|.-+.++.+++.++..|++++.+......++.. |+++.++..|.+. +++.+..++.+|.++... +...
T Consensus 16 ~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~-~~~~ 94 (529)
T 1jdh_A 16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGL 94 (529)
T ss_dssp -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-HHHH
T ss_pred HhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC-chhH
Confidence 356788888877899999999999999999887766666655 8899999999754 778888899999999855 4467
Q ss_pred HHHhhhhhHHHHHHHhcCCChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcCCchhHHHHHHHHHHhhcch-
Q 001385 445 QKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGEN- 523 (1088)
Q Consensus 445 ~~v~~~g~lp~L~~Ll~~~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~- 523 (1088)
..+++.|++|.|..++.+.++.+|..|+++++|++...++.+..+.+.++++.|+.++.+.+.+++..++.++..++..
T Consensus 95 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~ 174 (529)
T 1jdh_A 95 LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 174 (529)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCC
Confidence 7888999999999999999999999999999999998777777777899999999999999999999999999888753
Q ss_pred HHHHHhhh
Q 001385 524 ESLRRAIR 531 (1088)
Q Consensus 524 ~~~r~~~~ 531 (1088)
++.+..+.
T Consensus 175 ~~~~~~i~ 182 (529)
T 1jdh_A 175 QESKLIIL 182 (529)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555544
No 186
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=98.37 E-value=3.2e-07 Score=110.24 Aligned_cols=151 Identities=14% Similarity=0.154 Sum_probs=121.1
Q ss_pred ccccccceeeccCChhhhhhHHHHhccccCCchhh-HHHHHCCCcHHHHHHhccC--ChHHHHHHHHHHHhhhccChH--
Q 001385 368 NAVRQLISMISSDNRHVVEQACSALSSLAGDVSVA-MLLMKCDIMQPIIAVLKSF--APEEVKSVLQVVGQLAFASDT-- 442 (1088)
Q Consensus 368 ~~Lp~L~~L~Ls~N~~v~~~a~~~L~~L~~~~~~~-~~l~~~~~~~~Ll~lL~~~--~~~~~~~~l~~L~~L~~~sd~-- 442 (1088)
+.++.|..+.-+.++.+...++++|++|+...... ..+.+.|+++.++.++... .++.+..++.+|.+++..+..
T Consensus 266 ~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~ 345 (529)
T 1jdh_A 266 GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAE 345 (529)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHH
Confidence 56788888888889999999999999999876655 8899999999999999753 367778899999999865322
Q ss_pred -HHHHHhhhhhHHHHHHHhcCCC-hhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcCCchhHHHHHHHHHHh
Q 001385 443 -VAQKMLTKDVLKSLKLLCAHKN-PEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAI 519 (1088)
Q Consensus 443 -~~~~v~~~g~lp~L~~Ll~~~~-~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~ 519 (1088)
....+.+.|++|.|..++.+.+ ..++..|+++++|++.+.+++. .+.+.++++.|+.++...+.+++++|+|++.+
T Consensus 346 ~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~-~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n 423 (529)
T 1jdh_A 346 MAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHA-PLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQ 423 (529)
T ss_dssp HHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHH-HHHHTTHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhH-HHHHcCCHHHHHHHHHHHhHHHHHHHhcccCc
Confidence 2457788999999999999876 5899999999999999988885 45589999999999998888999999998876
No 187
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=98.33 E-value=7.2e-07 Score=112.48 Aligned_cols=164 Identities=14% Similarity=0.180 Sum_probs=138.5
Q ss_pred cccccccceeeccCChhhhhhHHHHhccccCCchhhHHHHHC-CCcHHHHHHhccC-ChHHHHHHHHHHHhhhccChHHH
Q 001385 367 ENAVRQLISMISSDNRHVVEQACSALSSLAGDVSVAMLLMKC-DIMQPIIAVLKSF-APEEVKSVLQVVGQLAFASDTVA 444 (1088)
Q Consensus 367 ~~~Lp~L~~L~Ls~N~~v~~~a~~~L~~L~~~~~~~~~l~~~-~~~~~Ll~lL~~~-~~~~~~~~l~~L~~L~~~sd~~~ 444 (1088)
.+.++.|..|.-+.++.+++.++.+|++|+.+......+... ++++.|+..|... +.+.+..++.+|.+++... ...
T Consensus 149 ~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~-~~~ 227 (780)
T 2z6g_A 149 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHR-EGL 227 (780)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSH-HHH
T ss_pred hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc-hhH
Confidence 456788888777889999999999999999877666666644 7899999999755 7788899999999988654 447
Q ss_pred HHHhhhhhHHHHHHHhcCCChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcCCchhHHHHHHHHHHhhcc-h
Q 001385 445 QKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGE-N 523 (1088)
Q Consensus 445 ~~v~~~g~lp~L~~Ll~~~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~-~ 523 (1088)
..+++.|++|.|..++.+.+..+|..|+++++|++...++.++.+.+.++++.|+.++.+.+.+++..++.++..++. +
T Consensus 228 ~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~ 307 (780)
T 2z6g_A 228 LAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 307 (780)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 778889999999999999999999999999999999988877777789999999999999999999999999988874 4
Q ss_pred HHHHHhhh
Q 001385 524 ESLRRAIR 531 (1088)
Q Consensus 524 ~~~r~~~~ 531 (1088)
++.+..+.
T Consensus 308 ~e~~~~i~ 315 (780)
T 2z6g_A 308 QESKLIIL 315 (780)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHHH
Confidence 55555543
No 188
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=98.22 E-value=2.1e-06 Score=105.99 Aligned_cols=164 Identities=12% Similarity=0.142 Sum_probs=138.0
Q ss_pred ccccccceeecc-CChhhhhhHHHHhccccCCchhhHHHHHCCCcHHHHHHhccCChHHHHHHHHHHHhhhccChHHHHH
Q 001385 368 NAVRQLISMISS-DNRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQK 446 (1088)
Q Consensus 368 ~~Lp~L~~L~Ls-~N~~v~~~a~~~L~~L~~~~~~~~~l~~~~~~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd~~~~~ 446 (1088)
+.++.|..+.-+ .+..++..++.+|.+++........+.+.|+++.++.+|++.++..+..++.+|.+++...+.....
T Consensus 56 ~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~ 135 (644)
T 2z6h_A 56 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMA 135 (644)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHH
T ss_pred ChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHH
Confidence 446666666554 4788999999999999988776688899999999999999998899999999999999877777778
Q ss_pred HhhhhhHHHHHHHhcCCChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcCCc-hhHHHHHHHHHHhhcchHH
Q 001385 447 MLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPE-PRVNKAAARALAILGENES 525 (1088)
Q Consensus 447 v~~~g~lp~L~~Ll~~~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~~~-~~v~~~a~~aL~~l~~~~~ 525 (1088)
+.+.|++|.|+.++.+.+..++..++.++.+++.+.+..+..+.+.+.++.|+.++...+ +.+++.++.++..++..+.
T Consensus 136 v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~ 215 (644)
T 2z6h_A 136 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS 215 (644)
T ss_dssp HHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTT
T ss_pred HHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcc
Confidence 889999999999999999999988889999999876666666668899999999997664 4677888999999987776
Q ss_pred HHHhhh
Q 001385 526 LRRAIR 531 (1088)
Q Consensus 526 ~r~~~~ 531 (1088)
.+..+.
T Consensus 216 ~~~~l~ 221 (644)
T 2z6h_A 216 NKPAIV 221 (644)
T ss_dssp HHHHHH
T ss_pred cHHHHH
Confidence 665543
No 189
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=98.17 E-value=2.1e-06 Score=104.36 Aligned_cols=159 Identities=10% Similarity=0.048 Sum_probs=128.2
Q ss_pred ccccccccceeeccCChhhhhhHHHHhccccCCchhhHHHHHCCCcHHHHHHhccCChH---HHHHHHHHHHhhhccChH
Q 001385 366 DENAVRQLISMISSDNRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAPE---EVKSVLQVVGQLAFASDT 442 (1088)
Q Consensus 366 ~~~~Lp~L~~L~Ls~N~~v~~~a~~~L~~L~~~~~~~~~l~~~~~~~~Ll~lL~~~~~~---~~~~~l~~L~~L~~~sd~ 442 (1088)
+.+.+|.|..|.-+.++.++++++++|.+|+.+......++..|++++|+.++.+.... ....++++|.++....+.
T Consensus 455 eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np 534 (778)
T 3opb_A 455 RTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNP 534 (778)
T ss_dssp TTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCH
T ss_pred HCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCH
Confidence 34678899999889999999999999999998877779999999999999999876543 567899999999876655
Q ss_pred HHHHHhh----hhhHHHHHHHhcC-CCh-------------hHHHHHHHHHhhhhccccc-----cceeecccChhhhhH
Q 001385 443 VAQKMLT----KDVLKSLKLLCAH-KNP-------------EVQRFALLAVGNLAFCLEN-----RRILVTSESLRDLLM 499 (1088)
Q Consensus 443 ~~~~v~~----~g~lp~L~~Ll~~-~~~-------------~vq~~Al~algnla~~~~~-----~~~~v~~~~~~~~L~ 499 (1088)
.. +|. .|++|.|+.|+.. ... ..+.+|+.|+.|++...++ |+.++..+++++.|.
T Consensus 535 ~~--~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~ 612 (778)
T 3opb_A 535 GL--IFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIE 612 (778)
T ss_dssp HH--HSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHH
T ss_pred HH--HcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHH
Confidence 43 232 4899999999983 221 1266899999999998743 555553358999999
Q ss_pred hhhcCCchhHHHHHHHHHHhhcchHHH
Q 001385 500 RLTVGPEPRVNKAAARALAILGENESL 526 (1088)
Q Consensus 500 ~ll~~~~~~v~~~a~~aL~~l~~~~~~ 526 (1088)
.++.+.+..++++|+++++++..++..
T Consensus 613 ~LL~s~n~~VrrAA~elI~NL~~~~e~ 639 (778)
T 3opb_A 613 NLMLDENVPLQRSTLELISNMMSHPLT 639 (778)
T ss_dssp HGGGCSSHHHHHHHHHHHHHHHTSGGG
T ss_pred HHHhCCCHHHHHHHHHHHHHHhCCcHH
Confidence 999999999999999999999987653
No 190
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=98.07 E-value=4.1e-06 Score=105.57 Aligned_cols=155 Identities=15% Similarity=0.089 Sum_probs=128.0
Q ss_pred ccccccceeeccCCh-hhhhhHHHHhccccCCchhhHHHHHCCCcHHHHHHhccCC----------------------hH
Q 001385 368 NAVRQLISMISSDNR-HVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFA----------------------PE 424 (1088)
Q Consensus 368 ~~Lp~L~~L~Ls~N~-~v~~~a~~~L~~L~~~~~~~~~l~~~~~~~~Ll~lL~~~~----------------------~~ 424 (1088)
+.++.|..+.-+.+. .+...++++|++|+........+.+.++++.|+.+|...+ .+
T Consensus 488 ~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~ 567 (780)
T 2z6g_A 488 YGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEE 567 (780)
T ss_dssp TCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHH
T ss_pred CCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHH
Confidence 457777777766665 8999999999999987766688889999999999886532 23
Q ss_pred HHHHHHHHHHhhhccChHHHHHHhhhhhHHHHHHHhcCCChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcC
Q 001385 425 EVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVG 504 (1088)
Q Consensus 425 ~~~~~l~~L~~L~~~sd~~~~~v~~~g~lp~L~~Ll~~~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~ 504 (1088)
.+..++.+|.+|+. +......+.+.|++|.|+.++.+.+..++..|+.++++++...+.+. .+.++++++.|+.++.+
T Consensus 568 v~~~a~~aL~~La~-~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~-~i~~~g~i~~L~~Ll~~ 645 (780)
T 2z6g_A 568 IVEACTGALHILAR-DIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAE-AIEAEGATAPLTELLHS 645 (780)
T ss_dssp HHHHHHHHHHHHTT-SHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHH-HHHHTTCHHHHHHGGGC
T ss_pred HHHHHHHHHHHHhc-ChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHH-HHHHCCCHHHHHHHHcC
Confidence 34567888998884 45556667889999999999999999999999999999986555444 45588999999999999
Q ss_pred CchhHHHHHHHHHHhhcchH
Q 001385 505 PEPRVNKAAARALAILGENE 524 (1088)
Q Consensus 505 ~~~~v~~~a~~aL~~l~~~~ 524 (1088)
.++++++.|+++|..+..+.
T Consensus 646 ~~~~Vr~~A~~aL~~l~~~~ 665 (780)
T 2z6g_A 646 RNEGVATYAAAVLFRMSEDK 665 (780)
T ss_dssp SCHHHHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHHHHcCC
Confidence 99999999999999998764
No 191
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.96 E-value=8.1e-07 Score=96.10 Aligned_cols=102 Identities=21% Similarity=0.221 Sum_probs=67.9
Q ss_pred cccCccccE--EeCcCCCCCCCCccc----cccCCCCccEEEccCCCCCCcc---ccccCCCCCcEEEccCCCCCCCchh
Q 001385 145 IGVLTRLMR--SDLSTSGPGNNMGSG----FCDHWKTVTAVSLCGLGLSALP---VDLTRLPVLEKLYLDNNKLSTLPPE 215 (1088)
Q Consensus 145 l~~l~~L~~--L~Ls~N~l~~~~~~~----~~~~l~~L~~L~Ls~n~l~~lp---~~l~~l~~L~~L~L~~N~l~~lp~~ 215 (1088)
|...+.|+. ++++.|. ....+. ...++++|++|+|++|+|+.++ ..+..+++|+.|+|++|+|+.+. .
T Consensus 137 l~~dp~L~~~~l~l~~N~--~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~ 213 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNR--RSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-E 213 (267)
T ss_dssp GGGCHHHHHTTCCCCTTS--HHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-G
T ss_pred cCCCcchhhcCccccCCH--HHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-h
Confidence 444455555 5666664 111121 2245788888888888888654 45567888888888888888653 3
Q ss_pred hcCCC--CCcEEEccCCcCc-ccc-------hhccCCCCCCEEE
Q 001385 216 LGAMK--NLKVLIVDNNMLV-CVP-------VELRECVGLVELS 249 (1088)
Q Consensus 216 l~~l~--~L~~L~Ls~N~l~-~lp-------~~l~~l~~L~~L~ 249 (1088)
+..+. +|++|+|++|.+. .+| ..+..+++|+.||
T Consensus 214 l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 214 LDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp GGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred hhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 44444 8889999998887 344 2357788888875
No 192
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.94 E-value=1.4e-06 Score=94.10 Aligned_cols=61 Identities=36% Similarity=0.399 Sum_probs=29.7
Q ss_pred CCCCCcEEEccCCCCCCCc---hhhcCCCCCcEEEccCCcCcccchhccCCC--CCCEEEeccCCCC
Q 001385 195 RLPVLEKLYLDNNKLSTLP---PELGAMKNLKVLIVDNNMLVCVPVELRECV--GLVELSLEHNRLV 256 (1088)
Q Consensus 195 ~l~~L~~L~L~~N~l~~lp---~~l~~l~~L~~L~Ls~N~l~~lp~~l~~l~--~L~~L~Ls~N~l~ 256 (1088)
++++|++|+|++|+|+.++ ..+..+++|+.|+|++|+|+.+. .+..+. +|++|+|++|.+.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTG
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCc
Confidence 4555566666666555433 23345555555555555555331 222222 4555555555544
No 193
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.91 E-value=5.5e-05 Score=87.25 Aligned_cols=39 Identities=13% Similarity=0.128 Sum_probs=17.0
Q ss_pred ccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCC
Q 001385 144 GIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGL 184 (1088)
Q Consensus 144 ~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n 184 (1088)
+|.++++|+.+.+.++. .......|..+.+|+.+++..|
T Consensus 157 aF~~c~~L~~i~l~~~~--~~I~~~~F~~c~~L~~i~l~~~ 195 (394)
T 4fs7_A 157 AFATCESLEYVSLPDSM--ETLHNGLFSGCGKLKSIKLPRN 195 (394)
T ss_dssp TTTTCTTCCEEECCTTC--CEECTTTTTTCTTCCBCCCCTT
T ss_pred hhcccCCCcEEecCCcc--ceeccccccCCCCceEEEcCCC
Confidence 34444555555544332 2223334444444554444433
No 194
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=97.85 E-value=2.4e-05 Score=95.26 Aligned_cols=185 Identities=13% Similarity=0.130 Sum_probs=129.8
Q ss_pred hhHHHhhhhcCCCCccccccccccccccceeeccCChh---hhhhHHHHhccccCC-chhh--HHHHHCCCcHHHHHHhc
Q 001385 346 LASALAKIMQDQENRVVVGKDENAVRQLISMISSDNRH---VVEQACSALSSLAGD-VSVA--MLLMKCDIMQPIIAVLK 419 (1088)
Q Consensus 346 l~~~L~~i~~l~~N~l~ip~~~~~Lp~L~~L~Ls~N~~---v~~~a~~~L~~L~~~-~~~~--~~l~~~~~~~~Ll~lL~ 419 (1088)
..+.+.++.....+.-.+. .-|.++.|..+..++... ++..|.++|.+|... ++.. ..-...+++++|+.+|.
T Consensus 477 A~~aL~nLS~d~~~R~~lv-qqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~ 555 (778)
T 3opb_A 477 VVRIIYNITRSKNFIPQLA-QQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLP 555 (778)
T ss_dssp HHHHHHHHHTSGGGHHHHH-HTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSC
T ss_pred HHHHHHHHcCCHHHHHHHH-HCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcC
Confidence 3556666654433332332 347788888887766544 688999999998832 2222 10011488999999997
Q ss_pred c-CCh-------------HHHHHHHHHHHhhhccCh----HHHHHHhh-hhhHHHHHHHhcCCChhHHHHHHHHHhhhhc
Q 001385 420 S-FAP-------------EEVKSVLQVVGQLAFASD----TVAQKMLT-KDVLKSLKLLCAHKNPEVQRFALLAVGNLAF 480 (1088)
Q Consensus 420 ~-~~~-------------~~~~~~l~~L~~L~~~sd----~~~~~v~~-~g~lp~L~~Ll~~~~~~vq~~Al~algnla~ 480 (1088)
. +.. ..+..++.+|.||+..++ ...+.+++ .|++|.|+.|+.+.+..+|+.|++++.|++.
T Consensus 556 ~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~ 635 (778)
T 3opb_A 556 RSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMS 635 (778)
T ss_dssp CSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHT
T ss_pred CCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence 3 211 125679999999997763 33566788 5999999999999999999999999999998
Q ss_pred cccccc-eeeccc-----ChhhhhHhhhcCCchhHHHHHHHHHHhhc-chHHHHHhhh
Q 001385 481 CLENRR-ILVTSE-----SLRDLLMRLTVGPEPRVNKAAARALAILG-ENESLRRAIR 531 (1088)
Q Consensus 481 ~~~~~~-~~v~~~-----~~~~~L~~ll~~~~~~v~~~a~~aL~~l~-~~~~~r~~~~ 531 (1088)
+.+... ++.... +-+++|+.++...+.+++++|+|+++++. ..+.+.+.+-
T Consensus 636 ~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll 693 (778)
T 3opb_A 636 HPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELL 693 (778)
T ss_dssp SGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHT
T ss_pred CcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 777653 433111 12678999999999999999999999995 5666655544
No 195
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.77 E-value=0.00015 Score=83.55 Aligned_cols=85 Identities=11% Similarity=0.057 Sum_probs=37.5
Q ss_pred hhcCCCCCccEEEeeCCC---CCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCccc-ccc
Q 001385 119 RVVKRREPLRAVVLTKGV---GSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPV-DLT 194 (1088)
Q Consensus 119 ~~~~~l~~L~~L~Ls~n~---i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~-~l~ 194 (1088)
.+|.++.+|+.+.+..|. ++..-..+|.++.+|+.+.+..+ +.......|..+.+|+.+.+..+ +..++. .+.
T Consensus 81 ~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~ 157 (394)
T 4gt6_A 81 NAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEIDSEAFHHCEELDTVTIPEG-VTSVADGMFS 157 (394)
T ss_dssp TTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEECTTTTTTCTTCCEEECCTT-CCEECTTTTT
T ss_pred HHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceehhhhhhhhcccccccccce-eeeeccccee
Confidence 445555555555554432 22222234444555555444433 12233334445555555555432 233322 344
Q ss_pred CCCCCcEEEccC
Q 001385 195 RLPVLEKLYLDN 206 (1088)
Q Consensus 195 ~l~~L~~L~L~~ 206 (1088)
.+.+|+.+.+..
T Consensus 158 ~c~~L~~i~~~~ 169 (394)
T 4gt6_A 158 YCYSLHTVTLPD 169 (394)
T ss_dssp TCTTCCEEECCT
T ss_pred cccccccccccc
Confidence 455555555543
No 196
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.67 E-value=0.00022 Score=82.17 Aligned_cols=172 Identities=12% Similarity=0.079 Sum_probs=99.6
Q ss_pred chhhcCCCCCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccCCCCCCccccccCC
Q 001385 117 EMRVVKRREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRL 196 (1088)
Q Consensus 117 ~~~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l 196 (1088)
...+|..+.+|+.+.+.++ +...-...|.++.+|+.+++..| +..+....|..+..|+.+.+..+.. .+.......
T Consensus 154 ~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~~~-~i~~~~~~~ 229 (394)
T 4fs7_A 154 GDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNSLY-YLGDFALSK 229 (394)
T ss_dssp CTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTTCC-EECTTTTTT
T ss_pred chhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCCce-Eeehhhccc
Confidence 3467889999999999766 34444467888999999999877 3445556777888888877765532 233334445
Q ss_pred CCCcEEEccCCCCCCCc-hhhcCCCCCcEEEccCCcCcccchhccCCCCCCEEEeccCCCCCCcccccCCccccEEEecC
Q 001385 197 PVLEKLYLDNNKLSTLP-PELGAMKNLKVLIVDNNMLVCVPVELRECVGLVELSLEHNRLVRPLLDFRAMAELKILRLFG 275 (1088)
Q Consensus 197 ~~L~~L~L~~N~l~~lp-~~l~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~~~~~l~~l~~L~~L~Ls~ 275 (1088)
.+|+.+.+..+ ++.+. ..+..+..|+.+.+..+...--...+..+..|+.+.+..+.+.. ..|..+.+|+.+.+..
T Consensus 230 ~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~--~~F~~~~~L~~i~l~~ 306 (394)
T 4fs7_A 230 TGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPE--KTFYGCSSLTEVKLLD 306 (394)
T ss_dssp CCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECT--TTTTTCTTCCEEEECT
T ss_pred CCCceEEECCC-ceecccccccccccceeEEcCCCcceeeccccccccccceeccCceeecc--cccccccccccccccc
Confidence 56666666543 22222 34556666666666655443223344555555555554432211 1345555555555543
Q ss_pred CCCCCCc--cccCCCCCCeEEee
Q 001385 276 NPLEFLP--EILPLLKLRHLSLA 296 (1088)
Q Consensus 276 N~l~~l~--~l~~l~~L~~L~L~ 296 (1088)
+ ++.+. .+..+.+|+.++|.
T Consensus 307 ~-i~~I~~~aF~~c~~L~~i~lp 328 (394)
T 4fs7_A 307 S-VKFIGEEAFESCTSLVSIDLP 328 (394)
T ss_dssp T-CCEECTTTTTTCTTCCEECCC
T ss_pred c-cceechhhhcCCCCCCEEEeC
Confidence 3 33222 34455555555554
No 197
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.62 E-value=0.00097 Score=76.71 Aligned_cols=78 Identities=10% Similarity=0.172 Sum_probs=34.5
Q ss_pred cCCCCCcEEEccCCcCcccchhccCCCCCCEEEeccCCCCCCcc-cccCCccccEEEecCCCCCCCc--cccCCCCCCeE
Q 001385 217 GAMKNLKVLIVDNNMLVCVPVELRECVGLVELSLEHNRLVRPLL-DFRAMAELKILRLFGNPLEFLP--EILPLLKLRHL 293 (1088)
Q Consensus 217 ~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~Ls~N~l~~~~~-~l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L 293 (1088)
..+.+|+.+.+.++..+--...+.++.+|+.+.+. +.++.+.. .|.++.+|+.++|..+ ++.+. .|.+|.+|+.+
T Consensus 262 ~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i 339 (394)
T 4gt6_A 262 DSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERI 339 (394)
T ss_dssp TTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEE
T ss_pred eecccccEEecccccceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEE
Confidence 34444555544433222112234445555555553 22333332 3555555555555433 33222 34455555555
Q ss_pred Eee
Q 001385 294 SLA 296 (1088)
Q Consensus 294 ~L~ 296 (1088)
.|.
T Consensus 340 ~ip 342 (394)
T 4gt6_A 340 AIP 342 (394)
T ss_dssp EEC
T ss_pred EEC
Confidence 554
No 198
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.52 E-value=4.6e-05 Score=78.01 Aligned_cols=41 Identities=29% Similarity=0.346 Sum_probs=17.3
Q ss_pred ccCCCCCcEEEccCCCCC-----CCchhhcCCCCCcEEEccCCcCc
Q 001385 193 LTRLPVLEKLYLDNNKLS-----TLPPELGAMKNLKVLIVDNNMLV 233 (1088)
Q Consensus 193 l~~l~~L~~L~L~~N~l~-----~lp~~l~~l~~L~~L~Ls~N~l~ 233 (1088)
+..-+.|+.|+|++|+|. .+...+..-+.|+.|+|++|.|+
T Consensus 66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 333444444444444444 22233333344444444444444
No 199
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.42 E-value=8.6e-05 Score=74.56 Aligned_cols=78 Identities=5% Similarity=0.082 Sum_probs=44.4
Q ss_pred CCcEEEccCCcCc--ccchhccCCCCCCEEEeccCC-CCCCc-ccccCC----ccccEEEecCCC-CC--CCccccCCCC
Q 001385 221 NLKVLIVDNNMLV--CVPVELRECVGLVELSLEHNR-LVRPL-LDFRAM----AELKILRLFGNP-LE--FLPEILPLLK 289 (1088)
Q Consensus 221 ~L~~L~Ls~N~l~--~lp~~l~~l~~L~~L~Ls~N~-l~~~~-~~l~~l----~~L~~L~Ls~N~-l~--~l~~l~~l~~ 289 (1088)
+|+.||++++.|+ .+ ..+.+|++|++|+|++|. +++.. ..+..+ ++|+.|+|++|. |+ .+..+..+++
T Consensus 62 ~L~~LDLs~~~Itd~GL-~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGF-DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CEEEEEEESCCCCGGGG-GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred eEeEEeCcCCCccHHHH-HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 4555555555554 12 234556666666666664 43322 234443 357777777763 66 3445666777
Q ss_pred CCeEEeeCCC
Q 001385 290 LRHLSLANIR 299 (1088)
Q Consensus 290 L~~L~L~~N~ 299 (1088)
|++|+|+++.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 7777777764
No 200
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.38 E-value=7.2e-05 Score=76.54 Aligned_cols=42 Identities=14% Similarity=0.135 Sum_probs=24.4
Q ss_pred hhcCCCCCccEEEeeCC-CCCCC----CccccccCccccEEeCcCCC
Q 001385 119 RVVKRREPLRAVVLTKG-VGSGH----LSDGIGVLTRLMRSDLSTSG 160 (1088)
Q Consensus 119 ~~~~~l~~L~~L~Ls~n-~i~~~----~p~~l~~l~~L~~L~Ls~N~ 160 (1088)
..+.+-+.|++|+|++| .|... +.+.+..-+.|+.|+|++|.
T Consensus 35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~ 81 (197)
T 1pgv_A 35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA 81 (197)
T ss_dssp HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC
T ss_pred HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCC
Confidence 45566677888888774 55432 23344444556666666655
No 201
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.26 E-value=9.6e-05 Score=74.22 Aligned_cols=35 Identities=14% Similarity=0.010 Sum_probs=16.3
Q ss_pred CccEEEeeCCCCCCCCccccccCccccEEeCcCCC
Q 001385 126 PLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSG 160 (1088)
Q Consensus 126 ~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~ 160 (1088)
+|+.|||+++.|+..--..+.++++|+.|+|++|.
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~ 96 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH 96 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCC
Confidence 35555555555443322334444455555555443
No 202
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.06 E-value=0.0026 Score=72.61 Aligned_cols=177 Identities=11% Similarity=0.110 Sum_probs=120.0
Q ss_pred cchhhcCCCCCccEEEeeCCCCCC------------CCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccC
Q 001385 116 VEMRVVKRREPLRAVVLTKGVGSG------------HLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCG 183 (1088)
Q Consensus 116 ~~~~~~~~l~~L~~L~Ls~n~i~~------------~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~ 183 (1088)
+....|..+.+++.+.+..+.... .....+.....+..+.+..+. .......+..+.+|+.+.+..
T Consensus 149 i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~f~~~~~l~~i~~~~ 226 (379)
T 4h09_A 149 IKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTV--KTVTAYGFSYGKNLKKITITS 226 (379)
T ss_dssp ECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTC--CEECTTTTTTCSSCSEEECCT
T ss_pred cccchhcccccccccccccccceeecccceecccccceeccccccccccccccccce--eEEeecccccccccceeeecc
Confidence 334678888888888877654321 112234445556666655542 333445666778888888865
Q ss_pred CCCCCccc-cccCCCCCcEEEccCCCCCCCc-hhhcCCCCCcEEEccCCcCcccch-hccCCCCCCEEEeccCCCCCCcc
Q 001385 184 LGLSALPV-DLTRLPVLEKLYLDNNKLSTLP-PELGAMKNLKVLIVDNNMLVCVPV-ELRECVGLVELSLEHNRLVRPLL 260 (1088)
Q Consensus 184 n~l~~lp~-~l~~l~~L~~L~L~~N~l~~lp-~~l~~l~~L~~L~Ls~N~l~~lp~-~l~~l~~L~~L~Ls~N~l~~~~~ 260 (1088)
+ ++.+.. .+..+.+|+.+.+..+ ++.+. ..+.++.+|+.+.+..+ ++.++. .|.+|.+|+.+.+.++.++.+..
T Consensus 227 ~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~ 303 (379)
T 4h09_A 227 G-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEP 303 (379)
T ss_dssp T-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECT
T ss_pred c-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehh
Confidence 5 454443 5677888898888765 55444 45677888888888654 555554 56888899999998888876664
Q ss_pred -cccCCccccEEEecCCCCCCCc--cccCCCCCCeEEeeCC
Q 001385 261 -DFRAMAELKILRLFGNPLEFLP--EILPLLKLRHLSLANI 298 (1088)
Q Consensus 261 -~l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~L~~N 298 (1088)
.|.++.+|+.+.|..+ ++.+. .+.+|.+|+.+.+..+
T Consensus 304 ~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 304 RVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred hhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 6888899999988654 66444 5778888888887654
No 203
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.00 E-value=0.0046 Score=70.48 Aligned_cols=197 Identities=14% Similarity=0.106 Sum_probs=130.7
Q ss_pred hhcCCCCCccEEEeeCCCCCCCCccccccCccccEEeCcCCCCC-----------CCCccccccCCCCccEEEccCCCCC
Q 001385 119 RVVKRREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPG-----------NNMGSGFCDHWKTVTAVSLCGLGLS 187 (1088)
Q Consensus 119 ~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N~l~-----------~~~~~~~~~~l~~L~~L~Ls~n~l~ 187 (1088)
..|.++ +|+.+.+..+ ++..-...|..+..|+.+.+..+... .......+.....+..+.+..+...
T Consensus 130 ~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (379)
T 4h09_A 130 YIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVKT 207 (379)
T ss_dssp TTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCCE
T ss_pred cccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccccccccccccccceeE
Confidence 445544 5777766654 55545567888889998887765411 0111223444556666666554333
Q ss_pred CccccccCCCCCcEEEccCCCCCCCc-hhhcCCCCCcEEEccCCcCcccch-hccCCCCCCEEEeccCCCCCCcc-cccC
Q 001385 188 ALPVDLTRLPVLEKLYLDNNKLSTLP-PELGAMKNLKVLIVDNNMLVCVPV-ELRECVGLVELSLEHNRLVRPLL-DFRA 264 (1088)
Q Consensus 188 ~lp~~l~~l~~L~~L~L~~N~l~~lp-~~l~~l~~L~~L~Ls~N~l~~lp~-~l~~l~~L~~L~Ls~N~l~~~~~-~l~~ 264 (1088)
.....+..+.+|+.+.+..+ +..+. ..+..+..|+.+.+..+ ++.+.. .+.++.+|+.+.+..+ +..+.. .|..
T Consensus 208 i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~ 284 (379)
T 4h09_A 208 VTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSG 284 (379)
T ss_dssp ECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTT
T ss_pred Eeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccc
Confidence 33345667888999998765 44333 46788999999999876 665543 6788999999999654 544443 6899
Q ss_pred CccccEEEecCCCCCCCc--cccCCCCCCeEEeeCCCCCCCccccchhhhhcCcCCccccccc
Q 001385 265 MAELKILRLFGNPLEFLP--EILPLLKLRHLSLANIRIVADENLRSVNVQIEMENNSYFGASR 325 (1088)
Q Consensus 265 l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~L~~N~l~~~~~l~~l~~~~~l~~l~~l~l~~ 325 (1088)
+.+|+.+.+.++.++.++ .+.+|.+|+.+.|..+ ++..+.- .+.++.+|+.+.+..
T Consensus 285 c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~----aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 285 CSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVY----AFKNCKALSTISYPK 342 (379)
T ss_dssp CTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTT----TTTTCTTCCCCCCCT
T ss_pred ccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHH----HhhCCCCCCEEEECC
Confidence 999999999999888655 5889999999999754 4432211 134566777766643
No 204
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=96.87 E-value=0.0018 Score=61.81 Aligned_cols=119 Identities=16% Similarity=0.182 Sum_probs=90.4
Q ss_pred cccccceeeccCChhhhhhHHHHhccccCCchhhHHHHHCCCcHHHHHHhccCChHHHHHHHHHHHhhhccChHHHHHHh
Q 001385 369 AVRQLISMISSDNRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKML 448 (1088)
Q Consensus 369 ~Lp~L~~L~Ls~N~~v~~~a~~~L~~L~~~~~~~~~l~~~~~~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd~~~~~v~ 448 (1088)
..+.|..+.-+.++.++..++++|+.+... .++.|+..+++.++.+...++.+|.++.
T Consensus 13 ~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~-----------~~~~L~~~L~d~~~~vR~~A~~aL~~~~----------- 70 (131)
T 1te4_A 13 GLVPRGSHMADENKWVRRDVSTALSRMGDE-----------AFEPLLESLSNEDWRIRGAAAWIIGNFQ----------- 70 (131)
T ss_dssp --------CCSSCCCSSSSCCSSTTSCSST-----------THHHHHHGGGCSCHHHHHHHHHHHGGGC-----------
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHhCch-----------HHHHHHHHHcCCCHHHHHHHHHHHHhcC-----------
Confidence 355666666678888888999999888632 1477888888888888888899888765
Q ss_pred hhhhHHHHHHHhcCCChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcCCchhHHHHHHHHHHhh
Q 001385 449 TKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAIL 520 (1088)
Q Consensus 449 ~~g~lp~L~~Ll~~~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l 520 (1088)
...+++.|..++.+.++.|+..|+++++++. .....+.|..++...++.|+..|+++|..+
T Consensus 71 ~~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~-----------~~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 71 DERAVEPLIKLLEDDSGFVRSGAARSLEQIG-----------GERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp SHHHHHHHHHHHHHCCTHHHHHHHHHHHHHC-----------SHHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----------cHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 1346889999999999999999999999874 234678889998889999999999998653
No 205
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=96.67 E-value=0.008 Score=62.11 Aligned_cols=123 Identities=22% Similarity=0.274 Sum_probs=88.6
Q ss_pred ccccceeeccCChhhhhhHHHHhccccCCchhhHHHHHCCCcHHHHHHhccCChHHHHHHHHHHHhhhccChHHHHHHhh
Q 001385 370 VRQLISMISSDNRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLT 449 (1088)
Q Consensus 370 Lp~L~~L~Ls~N~~v~~~a~~~L~~L~~~~~~~~~l~~~~~~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd~~~~~v~~ 449 (1088)
++.|..+.-..++.++..++++|+.+.. .+.++.++..+.+.++.+...++.+|..+. .
T Consensus 52 ~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~-----------~ 110 (211)
T 3ltm_A 52 VEPLIKALKDEDAWVRRAAADALGQIGD----------ERAVEPLIKALKDEDGWVRQSAAVALGQIG-----------D 110 (211)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC-----------C
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhhCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----------c
Confidence 4555555556677788888888877763 134456667777777777777777777664 2
Q ss_pred hhhHHHHHHHhcCCChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcCCchhHHHHHHHHHHhhcchH
Q 001385 450 KDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGENE 524 (1088)
Q Consensus 450 ~g~lp~L~~Ll~~~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 524 (1088)
..+++.|..++.+.++.|+..|+.+++++. .....+.|..++.+.++.|+..|+++|..++...
T Consensus 111 ~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~-----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~ 174 (211)
T 3ltm_A 111 ERAVEPLIKALKDEDWFVRIAAAFALGEIG-----------DERAVEPLIKALKDEDGWVRQSAADALGEIGGER 174 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC-----------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCSHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCchh
Confidence 356788888888888888888888888762 1245677888888888888888888888886543
No 206
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=96.62 E-value=0.0087 Score=61.84 Aligned_cols=123 Identities=22% Similarity=0.253 Sum_probs=100.5
Q ss_pred cccccceeeccCChhhhhhHHHHhccccCCchhhHHHHHCCCcHHHHHHhccCChHHHHHHHHHHHhhhccChHHHHHHh
Q 001385 369 AVRQLISMISSDNRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKML 448 (1088)
Q Consensus 369 ~Lp~L~~L~Ls~N~~v~~~a~~~L~~L~~~~~~~~~l~~~~~~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd~~~~~v~ 448 (1088)
.++.|..+.-+.++.++..++..|+.+.. ...++.|+..+.+.++.....++.+|..+.
T Consensus 20 ~~~~L~~~L~~~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~----------- 78 (211)
T 3ltm_A 20 KVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIG----------- 78 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHC-----------
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhC-----------
Confidence 45666666667889999999999998874 245677888888888888888888888765
Q ss_pred hhhhHHHHHHHhcCCChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcCCchhHHHHHHHHHHhhcch
Q 001385 449 TKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGEN 523 (1088)
Q Consensus 449 ~~g~lp~L~~Ll~~~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 523 (1088)
..++++.|..++.+.++.++..|+.+++.+. .....+.|+.++.++++.|+..|++++..++..
T Consensus 79 ~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~-----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~ 142 (211)
T 3ltm_A 79 DERAVEPLIKALKDEDGWVRQSAAVALGQIG-----------DERAVEPLIKALKDEDWFVRIAAAFALGEIGDE 142 (211)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC-----------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----------cHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH
Confidence 2467899999999999999999999999873 235678899999999999999999999998754
No 207
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=96.57 E-value=0.01 Score=60.72 Aligned_cols=123 Identities=22% Similarity=0.289 Sum_probs=89.1
Q ss_pred ccccceeeccCChhhhhhHHHHhccccCCchhhHHHHHCCCcHHHHHHhccCChHHHHHHHHHHHhhhccChHHHHHHhh
Q 001385 370 VRQLISMISSDNRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLT 449 (1088)
Q Consensus 370 Lp~L~~L~Ls~N~~v~~~a~~~L~~L~~~~~~~~~l~~~~~~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd~~~~~v~~ 449 (1088)
++.|..+.-..++.++..++++|+.+... ..++.++..+.+.++.+...++.+|..+. .
T Consensus 47 ~~~L~~~l~~~~~~vr~~a~~~L~~~~~~----------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~-----------~ 105 (201)
T 3ltj_A 47 VEPLIKALKDEDAWVRRAAADALGQIGDE----------RAVEPLIKALKDEDGWVRQSAAVALGQIG-----------D 105 (201)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCCG----------GGHHHHHHHTTCSSHHHHHHHHHHHHHHC-----------C
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhhCCH----------HHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----------c
Confidence 45555555567777888888888777632 34556667777777777777777777654 1
Q ss_pred hhhHHHHHHHhcCCChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcCCchhHHHHHHHHHHhhcchH
Q 001385 450 KDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGENE 524 (1088)
Q Consensus 450 ~g~lp~L~~Ll~~~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 524 (1088)
..+++.|..++.+.++.|+..|+++++.+. .....+.|..++.+.++.++..|++++..++..+
T Consensus 106 ~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~-----------~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~ 169 (201)
T 3ltj_A 106 ERAVEPLIKALKDEDWFVRIAAAFALGEIG-----------DERAVEPLIKALKDEDGWVRQSAADALGEIGGER 169 (201)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHT-----------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCSHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCchh
Confidence 346788888888888888888888888763 2356677888888888888888888888886543
No 208
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=96.49 E-value=0.01 Score=60.74 Aligned_cols=125 Identities=22% Similarity=0.268 Sum_probs=101.4
Q ss_pred ccccccceeeccCChhhhhhHHHHhccccCCchhhHHHHHCCCcHHHHHHhccCChHHHHHHHHHHHhhhccChHHHHHH
Q 001385 368 NAVRQLISMISSDNRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKM 447 (1088)
Q Consensus 368 ~~Lp~L~~L~Ls~N~~v~~~a~~~L~~L~~~~~~~~~l~~~~~~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd~~~~~v 447 (1088)
+..+.+..+.-+.++.++..++++|+.+... ..++.++..+.+.++.....++.+|..+.
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~----------~~~~~L~~~l~~~~~~vr~~a~~~L~~~~---------- 73 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGDE----------RAVEPLIKALKDEDAWVRRAAADALGQIG---------- 73 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCCG----------GGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCCh----------hHHHHHHHHHcCCCHHHHHHHHHHHHhhC----------
Confidence 4566677777788999999999999988742 34677888888888888888888887664
Q ss_pred hhhhhHHHHHHHhcCCChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcCCchhHHHHHHHHHHhhcchH
Q 001385 448 LTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGENE 524 (1088)
Q Consensus 448 ~~~g~lp~L~~Ll~~~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 524 (1088)
...+++.|..++.+.++.++..|+++++++. .....+.|+.++.++++.|+..|++++..++..+
T Consensus 74 -~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~-----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~ 138 (201)
T 3ltj_A 74 -DERAVEPLIKALKDEDGWVRQSAAVALGQIG-----------DERAVEPLIKALKDEDWFVRIAAAFALGEIGDER 138 (201)
T ss_dssp -CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC-----------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCGG
T ss_pred -CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHH
Confidence 2357899999999999999999999999863 2346788899999999999999999999887543
No 209
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.81 E-value=0.013 Score=55.76 Aligned_cols=54 Identities=30% Similarity=0.409 Sum_probs=28.6
Q ss_pred EEEccCCCCC--CccccccCCCCCcEEEccCCCCCCCchh-hcCCCCCcEEEccCCcCc
Q 001385 178 AVSLCGLGLS--ALPVDLTRLPVLEKLYLDNNKLSTLPPE-LGAMKNLKVLIVDNNMLV 233 (1088)
Q Consensus 178 ~L~Ls~n~l~--~lp~~l~~l~~L~~L~L~~N~l~~lp~~-l~~l~~L~~L~Ls~N~l~ 233 (1088)
.++.+++.++ .+|..+. .+|++|+|++|+|+.+|.. |..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4555556555 5554332 2455666666666655532 345555555555555443
No 210
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=95.63 E-value=0.01 Score=73.38 Aligned_cols=161 Identities=16% Similarity=0.206 Sum_probs=117.9
Q ss_pred ccccceeeccCChhhhhhHHHHhccccCCchhhHHHHHCCCcHHHHH-HhccCChHHHHHHHHHHHhhhccCh-HHHHHH
Q 001385 370 VRQLISMISSDNRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIA-VLKSFAPEEVKSVLQVVGQLAFASD-TVAQKM 447 (1088)
Q Consensus 370 Lp~L~~L~Ls~N~~v~~~a~~~L~~L~~~~~~~~~l~~~~~~~~Ll~-lL~~~~~~~~~~~l~~L~~L~~~sd-~~~~~v 447 (1088)
+|-|..| -+.++..+..||++|++|+.+.+....+...+++.+++. +|.+++.+++..++.+|.+|+.... .....+
T Consensus 37 ~Pll~~L-~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l 115 (684)
T 4gmo_A 37 LPVLKDL-KSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHL 115 (684)
T ss_dssp HHHHHHH-SSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHc-CCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHH
Confidence 3434443 467889999999999999987666688999999988765 5777888999999999999987653 445678
Q ss_pred hhhhhHHHHHHHhcCCCh---------------------hHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcC--
Q 001385 448 LTKDVLKSLKLLCAHKNP---------------------EVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVG-- 504 (1088)
Q Consensus 448 ~~~g~lp~L~~Ll~~~~~---------------------~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~-- 504 (1088)
+..|+++.|..++..... .+...++.++.+++.+++.....+...+.++.|+.++..
T Consensus 116 ~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~~ 195 (684)
T 4gmo_A 116 YRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISAD 195 (684)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhcC
Confidence 999999999998753211 122345667788877777666556677888888777643
Q ss_pred -CchhHHHHHHHHHHhhcch-HHHHHhhh
Q 001385 505 -PEPRVNKAAARALAILGEN-ESLRRAIR 531 (1088)
Q Consensus 505 -~~~~v~~~a~~aL~~l~~~-~~~r~~~~ 531 (1088)
...++...|..+|..+.+. ....+.+.
T Consensus 196 ~~~~~v~~~a~~~L~~ls~dn~~~~~~i~ 224 (684)
T 4gmo_A 196 IAPQDIYEEAISCLTTLSEDNLKVGQAIT 224 (684)
T ss_dssp CSCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 2357889999999888665 34444443
No 211
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.41 E-value=0.018 Score=54.75 Aligned_cols=42 Identities=31% Similarity=0.252 Sum_probs=24.1
Q ss_pred cccEEEecCCCCCCCc--cccCCCCCCeEEeeCCCCCCCccccc
Q 001385 267 ELKILRLFGNPLEFLP--EILPLLKLRHLSLANIRIVADENLRS 308 (1088)
Q Consensus 267 ~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~L~~N~l~~~~~l~~ 308 (1088)
+|+.|+|++|+|+.++ .+..+++|+.|+|++|.+.....+..
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l~~ 75 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVP 75 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGGHH
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCccHH
Confidence 4555555555555444 24455666666777776666555544
No 212
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=95.25 E-value=0.076 Score=57.31 Aligned_cols=122 Identities=12% Similarity=0.104 Sum_probs=86.1
Q ss_pred cCChhhhhhHHHHhccccCCchhhHHHHHCCCcHHHHHHhccCChHHHHHHHHHHHhhhccChHHHHHHhhhhhHHHHHH
Q 001385 379 SDNRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKL 458 (1088)
Q Consensus 379 s~N~~v~~~a~~~L~~L~~~~~~~~~l~~~~~~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd~~~~~v~~~g~lp~L~~ 458 (1088)
..++.++..++++|+.+....... ...+++.++..+.++++.+...++.+|..+.. ..++|.|..
T Consensus 102 d~~~~vr~~a~~aL~~l~~~~~~~----~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~-----------~~~~~~L~~ 166 (280)
T 1oyz_A 102 DKSACVRATAIESTAQRCKKNPIY----SPKIVEQSQITAFDKSTNVRRATAFAISVIND-----------KATIPLLIN 166 (280)
T ss_dssp CSCHHHHHHHHHHHHHHHHHCGGG----HHHHHHHHHHHTTCSCHHHHHHHHHHHHTC--------------CCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhccCCcc----cHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-----------HHHHHHHHH
Confidence 466778888888888886322111 11234566677777777777778888776541 246888888
Q ss_pred HhcCCChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcCCchhHHHHHHHHHHhhcchH
Q 001385 459 LCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGENE 524 (1088)
Q Consensus 459 Ll~~~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 524 (1088)
++.+.++.|+..|+++++.+... ...+.+.|+.++...++.++..|+++|..++...
T Consensus 167 ~l~d~~~~vr~~a~~aL~~~~~~---------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~~~ 223 (280)
T 1oyz_A 167 LLKDPNGDVRNWAAFAININKYD---------NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKR 223 (280)
T ss_dssp HHTCSSHHHHHHHHHHHHHHTCC---------CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCGG
T ss_pred HHcCCCHHHHHHHHHHHHhhccC---------cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCHh
Confidence 88888888888888888876311 2345677888888888888888888888887654
No 213
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=94.96 E-value=0.08 Score=57.11 Aligned_cols=132 Identities=17% Similarity=0.132 Sum_probs=93.2
Q ss_pred cccccceeeccCChhhhhhHHHHhccccCCchhhHHHHHCCCcHHHH-HHhccCChHHHHHHHHHHHhhhccChHHHHHH
Q 001385 369 AVRQLISMISSDNRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPII-AVLKSFAPEEVKSVLQVVGQLAFASDTVAQKM 447 (1088)
Q Consensus 369 ~Lp~L~~L~Ls~N~~v~~~a~~~L~~L~~~~~~~~~l~~~~~~~~Ll-~lL~~~~~~~~~~~l~~L~~L~~~sd~~~~~v 447 (1088)
.++.|..+.-+.++.++..++++|+.+......... +++.+. .++.+.++.+...++.+|.++...+. .
T Consensus 55 ~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~-----l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~-----~ 124 (280)
T 1oyz_A 55 AVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDN-----VFNILNNMALNDKSACVRATAIESTAQRCKKNP-----I 124 (280)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHH-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG-----G
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC-----c
Confidence 355566666677788888899999888743222211 111121 23456667777778888887763221 1
Q ss_pred hhhhhHHHHHHHhcCCChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcCCchhHHHHHHHHHHhhc
Q 001385 448 LTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILG 521 (1088)
Q Consensus 448 ~~~g~lp~L~~Ll~~~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~ 521 (1088)
....+++.|..++.+.++.|+..|+.+++++.. ..+.+.|+.++.++++.|+..|++++..++
T Consensus 125 ~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 187 (280)
T 1oyz_A 125 YSPKIVEQSQITAFDKSTNVRRATAFAISVIND-----------KATIPLLINLLKDPNGDVRNWAAFAININK 187 (280)
T ss_dssp GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC--------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhc
Confidence 234578999999999999999999999997632 246789999999999999999999998876
No 214
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=94.86 E-value=0.036 Score=58.62 Aligned_cols=147 Identities=19% Similarity=0.194 Sum_probs=105.4
Q ss_pred ccccceeec-cCChhhhhhHHHHhccccCCchhhHHHHHCCCcHHHHHHhccCChHHHHHHHHHHHhhhccChHHHHHHh
Q 001385 370 VRQLISMIS-SDNRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKML 448 (1088)
Q Consensus 370 Lp~L~~L~L-s~N~~v~~~a~~~L~~L~~~~~~~~~l~~~~~~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd~~~~~v~ 448 (1088)
++.|..+.- ..|..+...++.+++.|+......-.-+...+++.++..+.+....+...+..+|..++.... +
T Consensus 58 ~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~------~ 131 (242)
T 2qk2_A 58 VSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS------L 131 (242)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC------H
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC------H
Confidence 344555543 678889999999999999543322223444567888888888887777888888888874322 1
Q ss_pred hhhhHHHHHHHhcCCChhHHHHHHHHHhhhhcccc-ccceeecccChhhhhHhhhcCCchhHHHHHHHHHHhhcch
Q 001385 449 TKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLE-NRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGEN 523 (1088)
Q Consensus 449 ~~g~lp~L~~Ll~~~~~~vq~~Al~algnla~~~~-~~~~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 523 (1088)
..++|.|...+.+.++.++..++..++.+..... .+...-.-..+++.|+.++.....++++.|..++..+...
T Consensus 132 -~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 132 -EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKL 206 (242)
T ss_dssp -HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 2468889999999999999999999998643321 1111011125788899999999999999999999887644
No 215
>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A
Probab=94.65 E-value=0.024 Score=69.36 Aligned_cols=72 Identities=21% Similarity=0.188 Sum_probs=54.8
Q ss_pred CceEEEecCCCchHH-HHHHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhc-CCCCHHHHHHHHHHhhccccC
Q 001385 539 GLRILSMDGGGMKGL-ATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAV-KLMTLDQCEEIYKNLGKLVFA 613 (1088)
Q Consensus 539 ~~riLsLdGGG~RG~-~~~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~-~~~s~~e~~~~y~~~~~~iF~ 613 (1088)
+.-.|+++|||.|++ +.+|+|+++.+. .+.+..++|+|.|.|+.+.+.+.. ..++..++.+.+..+...++.
T Consensus 188 P~i~~~~SGGg~ra~~~~~G~l~~l~~~---gll~~~~y~~g~sgg~w~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ 261 (749)
T 1cjy_A 188 PVVAILGSGGGFRAMVGFSGVMKALYES---GILDCATYVAGLSGSTWYMSTLYSHPDFPEKGPEEINEELMKNVSH 261 (749)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHHHHHHT---SCGGGEEEEEECHHHHHHHHHHHHCTTTTTSCHHHHHHHHHHHHHS
T ss_pred ceeEEEeccccHHHhhcchhHHHHhhhC---CCcccccEEEecchhhHhHhhHHhcCCCChhhHHHHHHHHHhhccc
Confidence 357899999999999 699999999875 678899999999999999555543 356655555555555555553
No 216
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=93.92 E-value=0.018 Score=71.06 Aligned_cols=173 Identities=21% Similarity=0.237 Sum_probs=116.7
Q ss_pred hHHHhhhhcCCCCccccccccccccc-cceeeccCChhhhhhHHHHhccccCC--chhhHHHHHCCCcHHHHHHhccCCh
Q 001385 347 ASALAKIMQDQENRVVVGKDENAVRQ-LISMISSDNRHVVEQACSALSSLAGD--VSVAMLLMKCDIMQPIIAVLKSFAP 423 (1088)
Q Consensus 347 ~~~L~~i~~l~~N~l~ip~~~~~Lp~-L~~L~Ls~N~~v~~~a~~~L~~L~~~--~~~~~~l~~~~~~~~Ll~lL~~~~~ 423 (1088)
.+++.+|+....+. ..-...+.+.. |..+....+..|+.++.++|+||+.+ ...+..+++.|++.+|+..++....
T Consensus 55 ~~al~~l~~~~~~~-~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l~~~~il~~L~~~l~~~~~ 133 (684)
T 4gmo_A 55 AGAIANIVQDAKCR-KLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHLYRLDVLTAIEHAAKAVLE 133 (684)
T ss_dssp HHHHHHHTTSHHHH-HHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHH-HHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHcChHHHHHHHHHhhHH
Confidence 55666665322221 11111223333 45566668899999999999999964 3444889999999999887753211
Q ss_pred ---------------------HHHHHHHHHHHhhhccChHHHHHHhhhhhHHHHHHHhcCC---ChhHHHHHHHHHhhhh
Q 001385 424 ---------------------EEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHK---NPEVQRFALLAVGNLA 479 (1088)
Q Consensus 424 ---------------------~~~~~~l~~L~~L~~~sd~~~~~v~~~g~lp~L~~Ll~~~---~~~vq~~Al~algnla 479 (1088)
+...+.+.+|..|+.+++.....+...+.++.|..++.+. ...++..|+.++.+++
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls 213 (684)
T 4gmo_A 134 TLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLS 213 (684)
T ss_dssp HHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHH
T ss_pred HHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHh
Confidence 1223467788888888888788888999999999998643 3579999999999998
Q ss_pred ccccccceeecccChhh---hhHhhhcCCchhHHHHHHHHHHhhc
Q 001385 480 FCLENRRILVTSESLRD---LLMRLTVGPEPRVNKAAARALAILG 521 (1088)
Q Consensus 480 ~~~~~~~~~v~~~~~~~---~L~~ll~~~~~~v~~~a~~aL~~l~ 521 (1088)
-.+....+.+.+.+... .++.+..+.+ ..+..+|..+..+.
T Consensus 214 ~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~-~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 214 EDNLKVGQAITDDQETHVYDVLLKLATGTD-PRAVMACGVLHNVF 257 (684)
T ss_dssp TTCHHHHHHHHTCCSSCHHHHHHHHHHSSC-TTHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHhcchHHHHHHHHHHhcCCc-HHHHHHHHHHHhHh
Confidence 88887777666655433 3443434333 34566777776653
No 217
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=93.53 E-value=0.098 Score=62.21 Aligned_cols=165 Identities=8% Similarity=0.081 Sum_probs=119.6
Q ss_pred ccccccceeeccCChhhhhhHHHHhccccCCchhh-HHHHHCCCcHHHHHHhccCCh----HHHHHHHHHHHhhhccChH
Q 001385 368 NAVRQLISMISSDNRHVVEQACSALSSLAGDVSVA-MLLMKCDIMQPIIAVLKSFAP----EEVKSVLQVVGQLAFASDT 442 (1088)
Q Consensus 368 ~~Lp~L~~L~Ls~N~~v~~~a~~~L~~L~~~~~~~-~~l~~~~~~~~Ll~lL~~~~~----~~~~~~l~~L~~L~~~sd~ 442 (1088)
+.++.|..+.-.....++.+++-.|.+|..++.+. ..+.-.|+.+.|+.++..... .++..++.++.+|...|..
T Consensus 166 ~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~s 245 (651)
T 3grl_A 166 MGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNS 245 (651)
T ss_dssp THHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHH
T ss_pred ccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHH
Confidence 56888888887777889999999999999999999 666677999999999986554 5567799999999977766
Q ss_pred HHHHHhhhhhHHHHHHHhcCCCh----hHHH-----HHHHHHhhhhccc-------cccceeecccChhhhhHhhhcCC-
Q 001385 443 VAQKMLTKDVLKSLKLLCAHKNP----EVQR-----FALLAVGNLAFCL-------ENRRILVTSESLRDLLMRLTVGP- 505 (1088)
Q Consensus 443 ~~~~v~~~g~lp~L~~Ll~~~~~----~vq~-----~Al~algnla~~~-------~~~~~~v~~~~~~~~L~~ll~~~- 505 (1088)
+.....+.|.+|+|..|+..+.. ..|+ .++..+.-+.... .+|.. +-+.|++++|++++...
T Consensus 246 NQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~-~~~~g~l~~Ll~ll~~~~ 324 (651)
T 3grl_A 246 NQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKA-MFQCGLLQQLCTILMATG 324 (651)
T ss_dssp HHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHH-HHHTTHHHHHHHHHTCSS
T ss_pred HHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHH-HHHCCCHHHHHHHHccCC
Confidence 66667778999999999874322 2233 1333444443332 23444 44889999999998766
Q ss_pred -chhHHHHHHHHHHhhc-chHHHHHhhhcC
Q 001385 506 -EPRVNKAAARALAILG-ENESLRRAIRGR 533 (1088)
Q Consensus 506 -~~~v~~~a~~aL~~l~-~~~~~r~~~~~~ 533 (1088)
...++.+|..+++-+- .++..+..+...
T Consensus 325 ~p~~i~~~Al~tla~~irgN~~~Q~~fa~~ 354 (651)
T 3grl_A 325 VPADILTETINTVSEVIRGCQVNQDYFASV 354 (651)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHhCCHHHHHHHhhc
Confidence 5567778777776653 445555555543
No 218
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=93.45 E-value=0.12 Score=61.55 Aligned_cols=127 Identities=14% Similarity=0.078 Sum_probs=101.5
Q ss_pred HHHCCCcHHHHHHhccCChHHHHHHHHHHHhhhccChHHHH-HHh-hhhhHHHHHHHhcCCChhHHHHHHHHHhhhhccc
Q 001385 405 LMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQ-KML-TKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCL 482 (1088)
Q Consensus 405 l~~~~~~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd~~~~-~v~-~~g~lp~L~~Ll~~~~~~vq~~Al~algnla~~~ 482 (1088)
+.+.+.+..|+.+|+..+..+...++++|..++.+.....+ .++ ..+.+++|+.++.+....+|-.|+..+.+++.++
T Consensus 118 ~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n 197 (651)
T 3grl_A 118 IKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSN 197 (651)
T ss_dssp HHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTC
T ss_pred HcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCC
Confidence 34567788889999999999999999999999987777444 345 4589999999999999999999999999999999
Q ss_pred cccceeecccChhhhhHhhhcCCch----hHHHHHHHHHHhhcc-hHHHHHhhh
Q 001385 483 ENRRILVTSESLRDLLMRLTVGPEP----RVNKAAARALAILGE-NESLRRAIR 531 (1088)
Q Consensus 483 ~~~~~~v~~~~~~~~L~~ll~~~~~----~v~~~a~~aL~~l~~-~~~~r~~~~ 531 (1088)
.+-+++|.-+|+++.|..+...... .+...+...+..+.. +...+..++
T Consensus 198 ~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~Fr 251 (651)
T 3grl_A 198 GAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFK 251 (651)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999999999999999999875544 455555555665543 444555544
No 219
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=92.71 E-value=0.078 Score=56.47 Aligned_cols=151 Identities=13% Similarity=0.158 Sum_probs=103.0
Q ss_pred cccceee-ccCChhhhhhHHHHhccccCCch-hh-HHHHHCCCcHHHHHHhccCChHHHHHHHHHHHhhhccChHHHHHH
Q 001385 371 RQLISMI-SSDNRHVVEQACSALSSLAGDVS-VA-MLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKM 447 (1088)
Q Consensus 371 p~L~~L~-Ls~N~~v~~~a~~~L~~L~~~~~-~~-~~l~~~~~~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd~~~~~v 447 (1088)
..|.... -..|..++..++.+++.|+.+.. .. ..-+..-+++.++..+++..+.++..+..++..++...+......
T Consensus 63 ~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~ 142 (249)
T 2qk1_A 63 GIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSG 142 (249)
T ss_dssp HHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTC
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCC
Confidence 3444443 45678889999999999884332 11 112223356777888887777777777777777775332211000
Q ss_pred hhhhhHHHHHHHhcCCChhHHHHHHHHHhhhhcccccc-cee--ecccChhhhhHhhhcCCchhHHHHHHHHHHhhc
Q 001385 448 LTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENR-RIL--VTSESLRDLLMRLTVGPEPRVNKAAARALAILG 521 (1088)
Q Consensus 448 ~~~g~lp~L~~Ll~~~~~~vq~~Al~algnla~~~~~~-~~~--v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~ 521 (1088)
.-..+|+.|...+.+.++.++..++..++.++...... .++ .....+++.|..++...+.+|++.|..++..+.
T Consensus 143 ~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~ 219 (249)
T 2qk1_A 143 RNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILI 219 (249)
T ss_dssp TTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 02257889999999999999999999999887554432 111 112478899999999999999999999998854
No 220
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=92.41 E-value=0.35 Score=57.82 Aligned_cols=143 Identities=17% Similarity=0.168 Sum_probs=90.3
Q ss_pred cccceeeccCChhhhhhHHHHhccccCCchhhHHHHHCCCcHHHHHHhccCChHHHHHHHHHHHhhhccChHHHHHHhhh
Q 001385 371 RQLISMISSDNRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTK 450 (1088)
Q Consensus 371 p~L~~L~Ls~N~~v~~~a~~~L~~L~~~~~~~~~l~~~~~~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd~~~~~v~~~ 450 (1088)
+.+..+.-..+..|++.++.+++.+...... ..+...+++.+..++.+.+......++.++..++..-. ...+..
T Consensus 444 ~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~--~~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~---~~~~~~ 518 (588)
T 1b3u_A 444 SLCMAWLVDHVYAIREAATSNLKKLVEKFGK--EWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCG---QDITTK 518 (588)
T ss_dssp HHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH--HHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHH---HHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHHhCc--hhHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcC---HHHHHH
Confidence 3333333344566777777777777632111 11122344555555555556666667777777763211 122445
Q ss_pred hhHHHHHHHhcCCChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcCCchhHHHHHHHHHHhhc
Q 001385 451 DVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILG 521 (1088)
Q Consensus 451 g~lp~L~~Ll~~~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~ 521 (1088)
.++|.|..++.+.++.|+..++.+++.+...-... . ....+.+.|..++...+.+|+..|+.++..+.
T Consensus 519 ~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~--~-~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 519 HMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS--T-LQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHH--H-HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchh--h-hHHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Confidence 67888888888888899988999998886433211 1 12456778888888888899999999988765
No 221
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=92.35 E-value=0.084 Score=66.93 Aligned_cols=151 Identities=14% Similarity=0.025 Sum_probs=100.5
Q ss_pred ccccceeeccCChhhhhhHHHHhccccCCchhhHHHHHCCCcHHHHHHhccCChHHHHHHHHHHHhhhccChHHHHHHhh
Q 001385 370 VRQLISMISSDNRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLT 449 (1088)
Q Consensus 370 Lp~L~~L~Ls~N~~v~~~a~~~L~~L~~~~~~~~~l~~~~~~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd~~~~~v~~ 449 (1088)
++.|..+.-+.+..+++.++++++.++........-+...+++.++..+.+..+.+...++.++++++..........+-
T Consensus 361 ~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~ 440 (852)
T 4fdd_A 361 LPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYL 440 (852)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 44455555567889999999999999976654422233456777888888888888888999999887422111122344
Q ss_pred hhhHHHHHHHhcCCChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcCCchhHHHHHHHHHHhhc
Q 001385 450 KDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILG 521 (1088)
Q Consensus 450 ~g~lp~L~~Ll~~~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~ 521 (1088)
..+++.|...+.+.++.+|..|++++++++........-. -..+++.|+.++...+.+....+..++..+.
T Consensus 441 ~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~-l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~ 511 (852)
T 4fdd_A 441 KPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPY-LAYILDTLVFAFSKYQHKNLLILYDAIGTLA 511 (852)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGG-HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhH-HHHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 5789999999988999999999999999975443321111 2345566666665544444444455555543
No 222
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=91.88 E-value=0.17 Score=47.76 Aligned_cols=88 Identities=11% Similarity=0.175 Sum_probs=69.6
Q ss_pred ccccceeeccCChhhhhhHHHHhccccCCchhhHHHHHCCCcHHHHHHhccCChHHHHHHHHHHHhhhccChHHHHHHhh
Q 001385 370 VRQLISMISSDNRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLT 449 (1088)
Q Consensus 370 Lp~L~~L~Ls~N~~v~~~a~~~L~~L~~~~~~~~~l~~~~~~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd~~~~~v~~ 449 (1088)
.+.|..+.-..++.++..++++|+++... ..++.|+..+.+.++.+...+..+|.++. +
T Consensus 44 ~~~L~~~L~d~~~~vR~~A~~aL~~~~~~----------~a~~~L~~~L~d~~~~VR~~A~~aL~~~~-----------~ 102 (131)
T 1te4_A 44 FEPLLESLSNEDWRIRGAAAWIIGNFQDE----------RAVEPLIKLLEDDSGFVRSGAARSLEQIG-----------G 102 (131)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHGGGCSH----------HHHHHHHHHHHHCCTHHHHHHHHHHHHHC-----------S
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCCH----------HHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----------c
Confidence 35555555578899999999999999731 13567778888888888888888888765 2
Q ss_pred hhhHHHHHHHhcCCChhHHHHHHHHHhhh
Q 001385 450 KDVLKSLKLLCAHKNPEVQRFALLAVGNL 478 (1088)
Q Consensus 450 ~g~lp~L~~Ll~~~~~~vq~~Al~algnl 478 (1088)
..+++.|..++.+.+..|+..|..+++.|
T Consensus 103 ~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 103 ERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 45689999999999999999999998764
No 223
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=91.82 E-value=0.23 Score=62.82 Aligned_cols=136 Identities=18% Similarity=0.136 Sum_probs=93.1
Q ss_pred hhhhHHHHhccccCCchhhHHHHHCCCcHHHHHHhccCChHHHHHHHHHHHhhhccChHHHHHHhhhhhHHHHHHHhcCC
Q 001385 384 VVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHK 463 (1088)
Q Consensus 384 v~~~a~~~L~~L~~~~~~~~~l~~~~~~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd~~~~~v~~~g~lp~L~~Ll~~~ 463 (1088)
++..+..+|+.++...... ++ ..+++.+...+.+.+...+..++.+++.++........ ..-..++|.|..++.+.
T Consensus 337 vr~~a~~~L~~la~~~~~~--~~-~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~-~~l~~~l~~l~~~l~d~ 412 (852)
T 4fdd_A 337 LRKCSAAALDVLANVYRDE--LL-PHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMI-PYLPELIPHLIQCLSDK 412 (852)
T ss_dssp HHHHHHHHHHHHHHHHGGG--GH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHG-GGHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHhccHH--HH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHH-HHHHHHHHHHHHHcCCC
Confidence 4455555666555321111 11 12334445566777777788899999999866554333 34467899999999999
Q ss_pred ChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcCCchhHHHHHHHHHHhhcch
Q 001385 464 NPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGEN 523 (1088)
Q Consensus 464 ~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 523 (1088)
++.|+..|++++|+++...........-..+++.|+..+...++++++.|++++..+.+.
T Consensus 413 ~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~ 472 (852)
T 4fdd_A 413 KALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEE 472 (852)
T ss_dssp SHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999998754332211122335678888888888999999999999988643
No 224
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=91.56 E-value=0.29 Score=56.51 Aligned_cols=73 Identities=19% Similarity=0.106 Sum_probs=59.0
Q ss_pred hhhHHHHHHHhcCCChhHHHHHHHHHhhhhcccc-ccceeecccChhhhhHhhhcCCchhHHHHHHHHHHhhcch
Q 001385 450 KDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLE-NRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGEN 523 (1088)
Q Consensus 450 ~g~lp~L~~Ll~~~~~~vq~~Al~algnla~~~~-~~~~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 523 (1088)
..++|.+...+.+.++.++..|+.++|.++.+.. ...+-. -..+++.++.++.++++.|+..|+|++..++..
T Consensus 365 ~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~-l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~ 438 (462)
T 1ibr_B 365 PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (462)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTT-TTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 3567888888889999999999999999987654 221111 246889999999999999999999999998754
No 225
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=90.45 E-value=0.27 Score=58.75 Aligned_cols=144 Identities=17% Similarity=0.097 Sum_probs=100.7
Q ss_pred cccceeeccCChhhhhhHHHHhccccCCchhhHHHHHCCCcHHHHHHhccCChHHHHHHHHHHHhhhccChHHHHHHhhh
Q 001385 371 RQLISMISSDNRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTK 450 (1088)
Q Consensus 371 p~L~~L~Ls~N~~v~~~a~~~L~~L~~~~~~~~~l~~~~~~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd~~~~~v~~~ 450 (1088)
+.|..+.-..++.|+..++.+|+.+...... ......+++.+..++.+.+..+...++.+|..++...+. ..+..
T Consensus 167 ~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~ 241 (588)
T 1b3u_A 167 QYFRNLCSDDTPMVRRAAASKLGEFAKVLEL--DNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ---EDLEA 241 (588)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH--HHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH---HHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHhcH--HhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCH---HHHHH
Confidence 3444444567888999999999988743221 122234555666677777777666778888777643222 12335
Q ss_pred hhHHHHHHHhcCCChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcCCchhHHHHHHHHHHhhcc
Q 001385 451 DVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGE 522 (1088)
Q Consensus 451 g~lp~L~~Ll~~~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~ 522 (1088)
.++|.+..++.+.++.++..|+.+++.++....... ....+.+.++.++...++.+++.|++++..+..
T Consensus 242 ~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~ 310 (588)
T 1b3u_A 242 LVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEI---TKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCE 310 (588)
T ss_dssp HTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHH---HHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCccc---chhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999875432211 134578889999999999999999999887654
No 226
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=89.82 E-value=1.6 Score=47.59 Aligned_cols=137 Identities=18% Similarity=0.154 Sum_probs=102.2
Q ss_pred cCChhhhhhHHHHhcc-ccCCchhhHHHHHCCCcHHHHHHhccCChHHHHHHHHHHHhhhccChHHHHHHhhhhhHHHHH
Q 001385 379 SDNRHVVEQACSALSS-LAGDVSVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLK 457 (1088)
Q Consensus 379 s~N~~v~~~a~~~L~~-L~~~~~~~~~l~~~~~~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd~~~~~v~~~g~lp~L~ 457 (1088)
+.+......++..|.. +..|..-....+..+++..|+.++.......+.-+|+++.++..+.+..-..+-....+.++.
T Consensus 129 ~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~ly 208 (339)
T 3dad_A 129 SSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQWLY 208 (339)
T ss_dssp HCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHHHHHHHH
Confidence 3455566667777777 544555558999999999999999888888888899999999865444444555778899999
Q ss_pred HHhcCCChhHHHHHHHHHhhhhccccccceeecccC----------hhhhhHhhhc---CCchhHHHHHHH
Q 001385 458 LLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSES----------LRDLLMRLTV---GPEPRVNKAAAR 515 (1088)
Q Consensus 458 ~Ll~~~~~~vq~~Al~algnla~~~~~~~~~v~~~~----------~~~~L~~ll~---~~~~~v~~~a~~ 515 (1088)
.++.+....|.+.|+..+-.++-..+.-..++..+- .+..|+.++. +.+.++.-.|..
T Consensus 209 slv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amt 279 (339)
T 3dad_A 209 TLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVT 279 (339)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHH
T ss_pred HHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHH
Confidence 999999999999999999988877765555443322 2566788886 667777666443
No 227
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=89.67 E-value=0.53 Score=56.83 Aligned_cols=141 Identities=17% Similarity=0.110 Sum_probs=94.2
Q ss_pred cccceeeccCChhhhhhHHHHhccccCCchhh-HHHHHCCCcHHHHHHhccCChHHHHHHHHHHHhhhccChHHHHHHhh
Q 001385 371 RQLISMISSDNRHVVEQACSALSSLAGDVSVA-MLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLT 449 (1088)
Q Consensus 371 p~L~~L~Ls~N~~v~~~a~~~L~~L~~~~~~~-~~l~~~~~~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd~~~~~v~~ 449 (1088)
..|..-.-+.|+.++..|+.+|+++.. ... ..+ ++.+..++.+.++.+...+.-++.++...+.. .+-+
T Consensus 89 n~l~kdL~~~n~~ir~~AL~~L~~i~~--~~~~~~l-----~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~---~~~~ 158 (591)
T 2vgl_B 89 NSFVKDCEDPNPLIRALAVRTMGCIRV--DKITEYL-----CEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ---MVED 158 (591)
T ss_dssp HHHGGGSSSSSHHHHHHHHHHHHTCCS--GGGHHHH-----HHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC---CHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHcCCh--HHHHHHH-----HHHHHHHcCCCChHHHHHHHHHHHHHHhhChh---hccc
Confidence 344444556899999999999999972 222 222 35678888888899888899999988754432 2233
Q ss_pred hhhHHHHHHHhcCCChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcCCchhHHHHHHHHHHhhc
Q 001385 450 KDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILG 521 (1088)
Q Consensus 450 ~g~lp~L~~Ll~~~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~ 521 (1088)
.++++.|..++.+.++.|+..|+.+++.++........+.........|+..+...++-.+.....++..+.
T Consensus 159 ~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~ 230 (591)
T 2vgl_B 159 QGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYN 230 (591)
T ss_dssp HHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSC
T ss_pred ccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhC
Confidence 578999999999999999999999999987665433122222233444454444444444444444554444
No 228
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=89.55 E-value=0.36 Score=58.29 Aligned_cols=140 Identities=17% Similarity=0.196 Sum_probs=99.2
Q ss_pred ccccceeeccCChhhhhhHHHHhccccCCchhhHHHHHCCCcHHHHHHhccCChHHHHHHHHHHHhhhccChHHHHHHhh
Q 001385 370 VRQLISMISSDNRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLT 449 (1088)
Q Consensus 370 Lp~L~~L~Ls~N~~v~~~a~~~L~~L~~~~~~~~~l~~~~~~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd~~~~~v~~ 449 (1088)
++.+..+.-+.|..++.-+..++..+....++.. .-+++.+..-+.++++..+..++.+|.++. ... +.
T Consensus 51 ~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~----~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~--~~~-----~~ 119 (591)
T 2vgl_B 51 FPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMA----IMAVNSFVKDCEDPNPLIRALAVRTMGCIR--VDK-----IT 119 (591)
T ss_dssp HHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHH----HTTHHHHGGGSSSSSHHHHHHHHHHHHTCC--SGG-----GH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHH----HHHHHHHHHHcCCCCHHHHHHHHHHHHcCC--hHH-----HH
Confidence 3445555556777777666666666553222221 112345555677777887788899988876 211 22
Q ss_pred hhhHHHHHHHhcCCChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcCCchhHHHHHHHHHHhhcch
Q 001385 450 KDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGEN 523 (1088)
Q Consensus 450 ~g~lp~L~~Ll~~~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 523 (1088)
..++|.+..++.+.++.|++.|+.+++++.....+ .+.+.++.+.+..++..+++.|+..|..++..+..+
T Consensus 120 ~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~---~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~ 190 (591)
T 2vgl_B 120 EYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ---MVEDQGFLDSLRDLIADSNPMVVANAVAALSEISES 190 (591)
T ss_dssp HHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC---CHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChh---hcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhh
Confidence 35678899999999999999999999998764433 333457889999999999999999999999888754
No 229
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=87.33 E-value=0.81 Score=47.11 Aligned_cols=152 Identities=13% Similarity=0.025 Sum_probs=108.7
Q ss_pred cccccceeeccCChhhhhhHHHHhccccCCc-hhhHHHHHCCCcHHHHHHhccCChHHHHHHHHHHHhhhccChHH----
Q 001385 369 AVRQLISMISSDNRHVVEQACSALSSLAGDV-SVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTV---- 443 (1088)
Q Consensus 369 ~Lp~L~~L~Ls~N~~v~~~a~~~L~~L~~~~-~~~~~l~~~~~~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd~~---- 443 (1088)
.+.-|..|.-..|+.++..++.+|..+-..- .......-...++.++.++++.+......+++||..+....+..
T Consensus 34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y 113 (265)
T 3b2a_A 34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTF 113 (265)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHH
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHH
Confidence 4566677777788889999999998887643 33344444556778888888888777788888888887432211
Q ss_pred ---------------------HHH------H--hhhhhHHHHHHHhcCCChhHHHHHHHHHhhhhccccccceeecccCh
Q 001385 444 ---------------------AQK------M--LTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESL 494 (1088)
Q Consensus 444 ---------------------~~~------v--~~~g~lp~L~~Ll~~~~~~vq~~Al~algnla~~~~~~~~~v~~~~~ 494 (1088)
+.. + ....++..+.+|+.+.+.++|..|++++-|++..++...-+ ..+
T Consensus 114 ~Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~---~~I 190 (265)
T 3b2a_A 114 LKAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHL---TLI 190 (265)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCG---GGT
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHhCcCCcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHH---HHH
Confidence 000 1 13456777888888999999999999999998777654432 255
Q ss_pred hhhhHhhhcCCchhHHHHHHHHHHhhcch
Q 001385 495 RDLLMRLTVGPEPRVNKAAARALAILGEN 523 (1088)
Q Consensus 495 ~~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 523 (1088)
+.-+-.++.+.++.+++.|..++..+...
T Consensus 191 ~~eI~elL~~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 191 LDEIPSLLQNDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp TTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 66667788889999999998888776544
No 230
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=85.37 E-value=1.3 Score=55.75 Aligned_cols=138 Identities=17% Similarity=0.113 Sum_probs=90.2
Q ss_pred ChhhhhhHHHHhccccCCchhhHHHHHCCCcHHHHHHhccCChHHHHHHHHHHHhhhccCh-HHHHHHhhhhhHHHHHHH
Q 001385 381 NRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASD-TVAQKMLTKDVLKSLKLL 459 (1088)
Q Consensus 381 N~~v~~~a~~~L~~L~~~~~~~~~l~~~~~~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd-~~~~~v~~~g~lp~L~~L 459 (1088)
+..++..+..+|+.++...... ++ ..+++.+...+.+.+...+..++.+++.++.... ..... .-..++|.|...
T Consensus 341 ~~~~r~~a~~~l~~l~~~~~~~--~~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~-~~~~~l~~l~~~ 416 (876)
T 1qgr_A 341 DWNPCKAAGVCLMLLATCCEDD--IV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKP-LVIQAMPTLIEL 416 (876)
T ss_dssp CCCHHHHHHHHHHHHHHHHGGG--GH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHH-HHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHCcHh--hH-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHH-HHHHHHHHHHHH
Confidence 3456666777777666322111 11 1223334455666677777888999999886543 22222 335689999999
Q ss_pred hcCCChhHHHHHHHHHhhhhccccccc-eeecccChhhhhHhhhcCCchhHHHHHHHHHHhhcch
Q 001385 460 CAHKNPEVQRFALLAVGNLAFCLENRR-ILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGEN 523 (1088)
Q Consensus 460 l~~~~~~vq~~Al~algnla~~~~~~~-~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 523 (1088)
+.+.++.|+..|++++++++....... ....-..+++.++..+... ++++..+++++..+...
T Consensus 417 l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~ 480 (876)
T 1qgr_A 417 MKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEA 480 (876)
T ss_dssp HTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHH
Confidence 999999999999999999976543321 0011224567777777664 88999999999988754
No 231
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=85.06 E-value=0.88 Score=52.35 Aligned_cols=157 Identities=10% Similarity=0.044 Sum_probs=100.9
Q ss_pred ccccccceeeccC--ChhhhhhHHHHhccccCCc-hhhHHHHHCCCcHHHHHHhccC--ChHHHHHHHHHHHhhhccChH
Q 001385 368 NAVRQLISMISSD--NRHVVEQACSALSSLAGDV-SVAMLLMKCDIMQPIIAVLKSF--APEEVKSVLQVVGQLAFASDT 442 (1088)
Q Consensus 368 ~~Lp~L~~L~Ls~--N~~v~~~a~~~L~~L~~~~-~~~~~l~~~~~~~~Ll~lL~~~--~~~~~~~~l~~L~~L~~~sd~ 442 (1088)
.-++.|....-+. +..+++.++.+|+.++.+. .....-+...+++.++..+... ...++..++.++.+++..-..
T Consensus 128 ~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~ 207 (462)
T 1ibr_B 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA 207 (462)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555556 7888999999999888532 1110001112455667777776 567777788888876532111
Q ss_pred HH-HHHhhhhhHHHHHHHhcCCChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcCCchhHHHHHHHHHHhhc
Q 001385 443 VA-QKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILG 521 (1088)
Q Consensus 443 ~~-~~v~~~g~lp~L~~Ll~~~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~ 521 (1088)
.. ...+..-+++.|..++.+.+..++..++.+++.++......-.-.....+++.++..+...++.++..++..+..+.
T Consensus 208 ~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~ 287 (462)
T 1ibr_B 208 NFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVC 287 (462)
T ss_dssp HHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHH
Confidence 11 11122335778888888889999999999999887544332111112266777777788889999999999888887
Q ss_pred chH
Q 001385 522 ENE 524 (1088)
Q Consensus 522 ~~~ 524 (1088)
...
T Consensus 288 ~~~ 290 (462)
T 1ibr_B 288 DEE 290 (462)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 232
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=82.66 E-value=5.6 Score=40.99 Aligned_cols=109 Identities=16% Similarity=0.106 Sum_probs=79.1
Q ss_pred CcHHHHHHhccCChHHHHHHHHHHHhhhccChHHHHHHhhhhhHHHHHHHhcCCChhHHHHHHHHHhhhhccccccceee
Q 001385 410 IMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILV 489 (1088)
Q Consensus 410 ~~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd~~~~~v~~~g~lp~L~~Ll~~~~~~vq~~Al~algnla~~~~~~~~~v 489 (1088)
.+..++.++.+.++..+.+++.+|.++...-+.......-...++.+++++++.+.++-..|+++++.+..+..---.-.
T Consensus 34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y 113 (265)
T 3b2a_A 34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTF 113 (265)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHH
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHH
Confidence 45677888888899999999999999997654555555555679999999999999998899999887755443211110
Q ss_pred cccChhhhhHhhhcCCchhHHHHHHHHHHhh
Q 001385 490 TSESLRDLLMRLTVGPEPRVNKAAARALAIL 520 (1088)
Q Consensus 490 ~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l 520 (1088)
..+...+..+...+++-+..+|+..+..+
T Consensus 114 --~Kl~~aL~dlik~~~~il~~eaae~Lgkl 142 (265)
T 3b2a_A 114 --LKAAKTLVSLLESPDDMMRIETIDVLSKL 142 (265)
T ss_dssp --HHHHHHHHHHTTSCCHHHHHHHHHHHHHC
T ss_pred --HHHHHHHHHHhcCCCchHHHHHHHHhCcC
Confidence 02345566666677777777777777666
No 233
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=82.33 E-value=5.5 Score=48.10 Aligned_cols=149 Identities=11% Similarity=0.124 Sum_probs=88.9
Q ss_pred cccccceeeccCChhhhhhHHHHhccccCCchhhHHHHHCCCcHHHHHHhcc---------------CChHHHHHHHHHH
Q 001385 369 AVRQLISMISSDNRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKS---------------FAPEEVKSVLQVV 433 (1088)
Q Consensus 369 ~Lp~L~~L~Ls~N~~v~~~a~~~L~~L~~~~~~~~~l~~~~~~~~Ll~lL~~---------------~~~~~~~~~l~~L 433 (1088)
-++.|..+.-..|+.|...++.+|..++.........+ ...++.++..|.. .++..+...+.+|
T Consensus 180 ~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~-~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L 258 (618)
T 1w63_A 180 FLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHF-RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLL 258 (618)
T ss_dssp GGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHH-HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHH-HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHH
Confidence 45677777777889999999999999997655431111 1345555554432 2344444455555
Q ss_pred HhhhccChHHH----------------------HHHh---------------hhhhHHHHHHHhcCCChhHHHHHHHHHh
Q 001385 434 GQLAFASDTVA----------------------QKML---------------TKDVLKSLKLLCAHKNPEVQRFALLAVG 476 (1088)
Q Consensus 434 ~~L~~~sd~~~----------------------~~v~---------------~~g~lp~L~~Ll~~~~~~vq~~Al~alg 476 (1088)
..++..+.... .+++ ...++..|..++.+.++.+|..|+.+++
T Consensus 259 ~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~ 338 (618)
T 1w63_A 259 RILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLL 338 (618)
T ss_dssp HHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 55543221110 0000 0135677777777777888888888888
Q ss_pred hhhccccccceeecccChhhhhHhhhcCCchhHHHHHHHHHHhhcch
Q 001385 477 NLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGEN 523 (1088)
Q Consensus 477 nla~~~~~~~~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 523 (1088)
.++..... ++ . ...+.++.++..++..|++.|...+..++..
T Consensus 339 ~i~~~~p~---~~-~-~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~ 380 (618)
T 1w63_A 339 KTVQTDHN---AV-Q-RHRSTIVDCLKDLDVSIKRRAMELSFALVNG 380 (618)
T ss_dssp HHHHHHHH---HH-G-GGHHHHHHGGGSSCHHHHHHHHHHHHHHCCS
T ss_pred HHHhhCHH---HH-H-HHHHHHHHHccCCChhHHHHHHHHHHHHccc
Confidence 77654322 12 1 2334556666777788888888877776654
No 234
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=80.30 E-value=2 Score=44.96 Aligned_cols=109 Identities=17% Similarity=0.065 Sum_probs=76.4
Q ss_pred HHHHHhccCChHHHHHHHHHHHhhhccChHHHHHHhhhhhHHHHHHHh-cCCChhHHHHHHHHHhhhhccccccceeecc
Q 001385 413 PIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLC-AHKNPEVQRFALLAVGNLAFCLENRRILVTS 491 (1088)
Q Consensus 413 ~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd~~~~~v~~~g~lp~L~~Ll-~~~~~~vq~~Al~algnla~~~~~~~~~v~~ 491 (1088)
.+...+.+.+......++..|..++.........-+ ..+++.|..++ .+.+..|+..|+.+++.++.+....-.- .-
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~-~~ 96 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSN-YA 96 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHH-HH
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHH-HH
Confidence 355666777777777788888877754211111111 35688888888 4899999999999999998544321111 12
Q ss_pred cChhhhhHhhhcCCchhHHHHHHHHHHhhcch
Q 001385 492 ESLRDLLMRLTVGPEPRVNKAAARALAILGEN 523 (1088)
Q Consensus 492 ~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 523 (1088)
..+++.++..+..+...++..|+.++..+...
T Consensus 97 ~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~ 128 (242)
T 2qk2_A 97 SACVPSLLEKFKEKKPNVVTALREAIDAIYAS 128 (242)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHc
Confidence 35778889999999999999999999887653
No 235
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=79.74 E-value=2.2 Score=53.49 Aligned_cols=143 Identities=17% Similarity=0.132 Sum_probs=92.4
Q ss_pred cCChhhhhhHHHHhccccCCch-hh-HHHHHCCCcHHHHHHhccCChHHHHHHHHHHHhhhccChHHH-HHHhhhhhHHH
Q 001385 379 SDNRHVVEQACSALSSLAGDVS-VA-MLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVA-QKMLTKDVLKS 455 (1088)
Q Consensus 379 s~N~~v~~~a~~~L~~L~~~~~-~~-~~l~~~~~~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd~~~-~~v~~~g~lp~ 455 (1088)
+.+..+++.++++++.+..... .. ...+. .+++.++..+.+..+.+...++.++++++..-.... ..-+-..++|.
T Consensus 380 ~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~ 458 (861)
T 2bpt_A 380 ADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQA 458 (861)
T ss_dssp CSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHH
T ss_pred CCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHH
Confidence 5667889999999999996542 22 22222 356677777777777777778888887763211100 01123457888
Q ss_pred HHHHhcCCChhHHHHHHHHHhhhhccccc-cceeec--ccChhhhhHhhhcCC--chhHHHHHHHHHHhhcch
Q 001385 456 LKLLCAHKNPEVQRFALLAVGNLAFCLEN-RRILVT--SESLRDLLMRLTVGP--EPRVNKAAARALAILGEN 523 (1088)
Q Consensus 456 L~~Ll~~~~~~vq~~Al~algnla~~~~~-~~~~v~--~~~~~~~L~~ll~~~--~~~v~~~a~~aL~~l~~~ 523 (1088)
|...+.+. +.++..|++++++++..... ....+. -..+++.|+.++... ++.++..++.++..+...
T Consensus 459 l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~ 530 (861)
T 2bpt_A 459 CLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEY 530 (861)
T ss_dssp HHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHH
Confidence 88888765 89999999999998654321 111110 123456666777643 368899999998887643
No 236
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=77.52 E-value=4.8 Score=48.66 Aligned_cols=134 Identities=15% Similarity=0.058 Sum_probs=95.1
Q ss_pred eeeccCChhhhhhHHHHhccccCCchhhHHHHHCCCcHHHHHHhccCChHHHHHHHHHHHhhhccChHHHHHHhhhhhHH
Q 001385 375 SMISSDNRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLK 454 (1088)
Q Consensus 375 ~L~Ls~N~~v~~~a~~~L~~L~~~~~~~~~l~~~~~~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd~~~~~v~~~g~lp 454 (1088)
.+.-+.+...+.-..-.+..+....++...+ ++..+..-+.++++..+..++++|.++.- .. + -..+++
T Consensus 77 k~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~l----~in~l~kDL~~~n~~vr~lAL~~L~~i~~--~~----~-~~~l~~ 145 (618)
T 1w63_A 77 KLIASQKFTDKRIGYLGAMLLLDERQDVHLL----MTNCIKNDLNHSTQFVQGLALCTLGCMGS--SE----M-CRDLAG 145 (618)
T ss_dssp HHHHSSSHHHHHHHHHHHHHHCCCCHHHHHH----HHHHHHHHHSCSSSHHHHHHHHHHHHHCC--HH----H-HHHHHH
T ss_pred HHHcCCchHHHHHHHHHHHHHhCCCcHHHHH----HHHHHHHhcCCCCHhHHHHHHHHHHhcCC--HH----H-HHHHHH
Confidence 3444566655555555556665544432111 22345556677888888889999998872 21 2 246789
Q ss_pred HHHHHhcCCChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcCCchhHHHHHHHHHHhhcchH
Q 001385 455 SLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGENE 524 (1088)
Q Consensus 455 ~L~~Ll~~~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 524 (1088)
.+..++.+.++.|++.|+.+++++.....+. + ..+.+.+..++...++.|...|+.++..+....
T Consensus 146 ~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~---v--~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~ 210 (618)
T 1w63_A 146 EVEKLLKTSNSYLRKKAALCAVHVIRKVPEL---M--EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERS 210 (618)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHHHHCGGG---G--GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHChHH---H--HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999997655432 2 267788888999999999999999999887653
No 237
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=77.32 E-value=3.2 Score=54.65 Aligned_cols=147 Identities=16% Similarity=0.062 Sum_probs=97.3
Q ss_pred cceeeccCChhhhhhHHHHhccccCCchhhHHHHHCCCcHHHHHHhccCChHHHHHHHHHHHhhhccChHH-----HHHH
Q 001385 373 LISMISSDNRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTV-----AQKM 447 (1088)
Q Consensus 373 L~~L~Ls~N~~v~~~a~~~L~~L~~~~~~~~~l~~~~~~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd~~-----~~~v 447 (1088)
|....-..+..++..++.+|+.+....... ....+++.++..+.+..+..+..+..+|..++...... ...-
T Consensus 53 Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~---~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~ 129 (1230)
T 1u6g_C 53 ILKLLEDKNGEVQNLAVKCLGPLVSKVKEY---QVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAAN 129 (1230)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHTTSCHH---HHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHhCCHH---HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHH
Confidence 333333678889999999999888543321 11123455666666666666666778888776432221 1112
Q ss_pred hhhhhHHHHHHHhc-CCChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcCCchhHHHHHHHHHHhhcch
Q 001385 448 LTKDVLKSLKLLCA-HKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGEN 523 (1088)
Q Consensus 448 ~~~g~lp~L~~Ll~-~~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 523 (1088)
.-..++|.|...+. +.+..++..|+.+++.++........- ....+++.|+..+.+.+..+++.|+.++..+...
T Consensus 130 ~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~-~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~ 205 (1230)
T 1u6g_C 130 VCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVN-FHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMS 205 (1230)
T ss_dssp HHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTT-THHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHH-HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHh
Confidence 34568999999988 588899999999999886432221110 1234667788888888999999999999988754
No 238
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=75.90 E-value=3.4 Score=51.91 Aligned_cols=148 Identities=15% Similarity=0.120 Sum_probs=93.6
Q ss_pred cceeeccCChhhhhhHHHHhccccCCch-hhHHHHHCCCcHHHHHHhccCChHHHHHHHHHHHhhhccChHHH-HHHhhh
Q 001385 373 LISMISSDNRHVVEQACSALSSLAGDVS-VAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVA-QKMLTK 450 (1088)
Q Consensus 373 L~~L~Ls~N~~v~~~a~~~L~~L~~~~~-~~~~l~~~~~~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd~~~-~~v~~~ 450 (1088)
+....-+.+..+++.++++++.+..... ....-+...+++.++..+.+..+.+...++.++.+++....... ..-.-.
T Consensus 371 l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~ 450 (876)
T 1qgr_A 371 IKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLA 450 (876)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHH
T ss_pred HHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHH
Confidence 3333335678899999999999997654 22111223467778888888888888888999998875432211 111234
Q ss_pred hhHHHHHHHhcCCChhHHHHHHHHHhhhhccccc-----------cceeec--ccChhhhhHhhhcCC---chhHHHHHH
Q 001385 451 DVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLEN-----------RRILVT--SESLRDLLMRLTVGP---EPRVNKAAA 514 (1088)
Q Consensus 451 g~lp~L~~Ll~~~~~~vq~~Al~algnla~~~~~-----------~~~~v~--~~~~~~~L~~ll~~~---~~~v~~~a~ 514 (1088)
.+++.|...+.+. +.++..|++++++++..... ....+. -..+++.|+.++... +..++..+.
T Consensus 451 ~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~ 529 (876)
T 1qgr_A 451 PLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAY 529 (876)
T ss_dssp HHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHH
T ss_pred HHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHH
Confidence 6788888888774 88999999999998754320 001110 123556666666543 345666677
Q ss_pred HHHHhhc
Q 001385 515 RALAILG 521 (1088)
Q Consensus 515 ~aL~~l~ 521 (1088)
.++..+.
T Consensus 530 ~~l~~l~ 536 (876)
T 1qgr_A 530 ESLMEIV 536 (876)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766654
No 239
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=70.48 E-value=10 Score=47.41 Aligned_cols=135 Identities=12% Similarity=0.099 Sum_probs=85.9
Q ss_pred hhhhhHHHHhccccCCchhhHHHHHCCCcHHHHHHhccCChHHHHHHHHHHHhhhccCh-HHHHHHhhhhhHHHHHHHhc
Q 001385 383 HVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASD-TVAQKMLTKDVLKSLKLLCA 461 (1088)
Q Consensus 383 ~v~~~a~~~L~~L~~~~~~~~~l~~~~~~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd-~~~~~v~~~g~lp~L~~Ll~ 461 (1088)
.++..+...|+.++...... ++ ..+++.+...+.+.+...+..++.+++.++.... ......+ ..++|.|...+.
T Consensus 346 ~~r~~a~~~L~~l~~~~~~~--~~-~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~ 421 (861)
T 2bpt_A 346 NVSMSAGACLQLFAQNCGNH--IL-EPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMN 421 (861)
T ss_dssp HHHHHHHHHHHHHHHHHGGG--GH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGG
T ss_pred cHHHHHHHHHHHHHHHccHh--HH-HHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcC
Confidence 45666667776666322111 00 0123334445566666777778999999986543 2222222 357899999999
Q ss_pred CCChhHHHHHHHHHhhhhccccccc-eeecccChhhhhHhhhcCCchhHHHHHHHHHHhhcc
Q 001385 462 HKNPEVQRFALLAVGNLAFCLENRR-ILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGE 522 (1088)
Q Consensus 462 ~~~~~vq~~Al~algnla~~~~~~~-~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~ 522 (1088)
+.++.++..+++++|.++....... ....-..+++.++..+... ++++..||+++..+..
T Consensus 422 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~ 482 (861)
T 2bpt_A 422 DQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVE 482 (861)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHH
Confidence 9999999999999998875432210 0001225667777777665 8899999999987654
No 240
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=67.40 E-value=4.5 Score=42.64 Aligned_cols=145 Identities=10% Similarity=-0.004 Sum_probs=87.8
Q ss_pred cCChhhhhhHHHHhcc-ccCCchhhH-HHHH-CCCcHHHHHHh-ccCChHHHHHHHHHHHhhhccCh-HHHHHHhhhhhH
Q 001385 379 SDNRHVVEQACSALSS-LAGDVSVAM-LLMK-CDIMQPIIAVL-KSFAPEEVKSVLQVVGQLAFASD-TVAQKMLTKDVL 453 (1088)
Q Consensus 379 s~N~~v~~~a~~~L~~-L~~~~~~~~-~l~~-~~~~~~Ll~lL-~~~~~~~~~~~l~~L~~L~~~sd-~~~~~v~~~g~l 453 (1088)
+.+-.-+.+++..|.. +........ ...+ ..++..+...+ +..+..++..++.+|..++..-. .....-+-.-++
T Consensus 27 s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~ll 106 (249)
T 2qk1_A 27 SSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVF 106 (249)
T ss_dssp CSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHH
Confidence 4555566677777777 642211110 0000 02244555566 56667777889999998883111 111102223478
Q ss_pred HHHHHHhcCCChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcCCchhHHHHHHHHHHhhcch
Q 001385 454 KSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGEN 523 (1088)
Q Consensus 454 p~L~~Ll~~~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 523 (1088)
|.+.+.+.+....|+..+..++-.++...+.-.....-..+++.|+..+.++.+.++.++...+..+...
T Consensus 107 p~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~ 176 (249)
T 2qk1_A 107 TPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKE 176 (249)
T ss_dssp HHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 9999999999999999888888777654321110000124667788888999999999998888776643
No 241
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=60.54 E-value=30 Score=41.54 Aligned_cols=140 Identities=16% Similarity=0.128 Sum_probs=99.6
Q ss_pred ccccceeeccCChhhhhhHHHHhccccCCchhhHHHHHCCCcHHHHHHhccCChHHHHHHHHHHHhhhccChHHHHHHhh
Q 001385 370 VRQLISMISSDNRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLT 449 (1088)
Q Consensus 370 Lp~L~~L~Ls~N~~v~~~a~~~L~~L~~~~~~~~~l~~~~~~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd~~~~~v~~ 449 (1088)
++....+.-+.|...+.-..-++..+....++...+. +..+..-+.++++..+..+++++.++.- .. +-
T Consensus 76 ~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L~----iN~l~kDl~~~n~~ir~lALr~L~~i~~--~e-----~~ 144 (621)
T 2vgl_A 76 HMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRLI----NNAIKNDLASRNPTFMGLALHCIANVGS--RE-----MA 144 (621)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHHHH----HHHHHHHHHSCCHHHHHHHHHHHHHHCC--HH-----HH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHHHH----HHHHHHhcCCCCHHHHHHHHHHhhccCC--HH-----HH
Confidence 3444455556777777777777787776655542111 2244445667778888889999998862 21 22
Q ss_pred hhhHHHHHHHh--cCCChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcCCchhHHHHHHHHHHhhcch
Q 001385 450 KDVLKSLKLLC--AHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGEN 523 (1088)
Q Consensus 450 ~g~lp~L~~Ll--~~~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 523 (1088)
..++|.+.+++ .+.++.|++.|+.++..+.....+ .+...++.+.+..++...++.|...|..++..+...
T Consensus 145 ~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~---~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~ 217 (621)
T 2vgl_A 145 EAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPD---LVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQK 217 (621)
T ss_dssp HHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGG---GCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChh---hcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHh
Confidence 35778899999 889999999999999988764443 232357889999999999999999988888777543
No 242
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=60.43 E-value=4.8 Score=46.14 Aligned_cols=70 Identities=16% Similarity=0.161 Sum_probs=60.5
Q ss_pred hhHHHHHHHhcC----------CChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcCCchhHHHHHHHHHHhh
Q 001385 451 DVLKSLKLLCAH----------KNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAIL 520 (1088)
Q Consensus 451 g~lp~L~~Ll~~----------~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l 520 (1088)
.++..|.+++.+ .++.+..-||.-+|.++.+..+.+.++...|+...+|.++.+++++|+++|..|+..+
T Consensus 395 ~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQkl 474 (480)
T 1ho8_A 395 KIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAI 474 (480)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 468889999873 3566666788889999999999999998889999999999999999999999988764
No 243
>2qs9_A Retinoblastoma-binding protein 9; B5T overexpressed gene protein, BOG, RBBP9, RBBP10, HR2978, NESG, structural genomics, PSI-2; 1.72A {Homo sapiens}
Probab=58.35 E-value=10 Score=37.33 Aligned_cols=52 Identities=19% Similarity=0.162 Sum_probs=35.5
Q ss_pred CceEEEecCCCchHHHHHHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhcC
Q 001385 539 GLRILSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVK 593 (1088)
Q Consensus 539 ~~riLsLdGGG~RG~~~~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~~ 593 (1088)
+++++++|--|..+......++.+.+.++. .+.+ .++|.|+||.+|+.++..
T Consensus 36 g~~vi~~d~~g~~~~~~~~~~~~~~~~l~~--~~~~-~lvG~S~Gg~ia~~~a~~ 87 (194)
T 2qs9_A 36 GFQCLAKNMPDPITARESIWLPFMETELHC--DEKT-IIIGHSSGAIAAMRYAET 87 (194)
T ss_dssp TCCEEECCCSSTTTCCHHHHHHHHHHTSCC--CTTE-EEEEETHHHHHHHHHHHH
T ss_pred CceEEEeeCCCCCcccHHHHHHHHHHHhCc--CCCE-EEEEcCcHHHHHHHHHHh
Confidence 689999987664333345556666666553 1222 689999999999998753
No 244
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=58.05 E-value=29 Score=34.33 Aligned_cols=127 Identities=17% Similarity=0.135 Sum_probs=80.5
Q ss_pred ChhhhhhHHHHhccccCCchhhHHHHHCCCcHHHHHHhccCChHHHHHHHHHHHhhhccChHHHHHHhhhhhHHHHHHHh
Q 001385 381 NRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLC 460 (1088)
Q Consensus 381 N~~v~~~a~~~L~~L~~~~~~~~~l~~~~~~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd~~~~~v~~~g~lp~L~~Ll 460 (1088)
.+.++-....+|+.|...++.+. .++...+..++.+++......++..+.-+.- +....+ ...+|+|..|+
T Consensus 120 d~kikIn~~yaLeeIaranP~l~----~~v~rdi~smltskd~~Dkl~aLnFi~alGe---n~~~yv--~PfLprL~aLL 190 (253)
T 2db0_A 120 DEKTKINVSYALEEIAKANPMLM----ASIVRDFMSMLSSKNREDKLTALNFIEAMGE---NSFKYV--NPFLPRIINLL 190 (253)
T ss_dssp SHHHHHHHHHHHHHHHHHCHHHH----HHHHHHHHHHTSCSSHHHHHHHHHHHHTCCT---TTHHHH--GGGHHHHHGGG
T ss_pred CccceecHHHHHHHHHHhChHHH----HHHHHHHHHHhcCCChHHHHHHHHHHHHHhc---cCcccc--CcchHHHHHHH
Confidence 44455555556666665444441 1223445666777666555556665554441 122222 23589999999
Q ss_pred cCCChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcCCchhHHHHHHHHHHhhcc
Q 001385 461 AHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGE 522 (1088)
Q Consensus 461 ~~~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~ 522 (1088)
...+.-|+..|..+++++|.-++--++++. --+.-+..+...+.+....++..+.-
T Consensus 191 ~D~deiVRaSaVEtL~~lA~~npklRkii~------~kl~e~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 191 HDGDEIVRASAVEALVHLATLNDKLRKVVI------KRLEELNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp GCSSHHHHHHHHHHHHHHHTSCHHHHHHHH------HHHHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred cCcchhhhHHHHHHHHHHHHcCHHHHHHHH------HHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988877666552 23444566777788777777766543
No 245
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=57.38 E-value=29 Score=43.36 Aligned_cols=65 Identities=25% Similarity=0.166 Sum_probs=50.5
Q ss_pred hHHHHHH-HhcCCChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcCCchhHHHHHHHHHHhhcch
Q 001385 452 VLKSLKL-LCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGEN 523 (1088)
Q Consensus 452 ~lp~L~~-Ll~~~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 523 (1088)
.++++.. |..+.++.++..|..|+|.+..++.+ ..+++.|..++...+..|++.|..++..++..
T Consensus 612 ~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~-------~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~g 677 (963)
T 4ady_A 612 TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL-------QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQ 677 (963)
T ss_dssp SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc-------HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcC
Confidence 4566666 44568899999999999988766653 23457888888899999999999999988743
No 246
>4fle_A Esterase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein, rossmann fold, HY; 2.10A {Yersinia enterocolitica subsp}
Probab=55.63 E-value=16 Score=36.18 Aligned_cols=49 Identities=16% Similarity=0.141 Sum_probs=31.9
Q ss_pred CCceEEEecCCCchHHHHHHHHHHHHHhcC-CCCCcccceEEecchHHHHHHHHhc
Q 001385 538 QGLRILSMDGGGMKGLATVQILKEIEKGTG-KRIHELFDLVCGTSTGGMLAIALAV 592 (1088)
Q Consensus 538 ~~~riLsLdGGG~RG~~~~~vL~~Le~~~~-~~i~~~FDli~GTStG~iiA~~l~~ 592 (1088)
.++++++.|-.| -|--.+..++.+.+..+ .+ -++.|.|+||.+|+.++.
T Consensus 32 ~~~~v~~pdl~~-~g~~~~~~l~~~~~~~~~~~-----i~l~G~SmGG~~a~~~a~ 81 (202)
T 4fle_A 32 PHIEMQIPQLPP-YPAEAAEMLESIVMDKAGQS-----IGIVGSSLGGYFATWLSQ 81 (202)
T ss_dssp TTSEEECCCCCS-SHHHHHHHHHHHHHHHTTSC-----EEEEEETHHHHHHHHHHH
T ss_pred CCcEEEEeCCCC-CHHHHHHHHHHHHHhcCCCc-----EEEEEEChhhHHHHHHHH
Confidence 357888887544 24444555555543322 22 278999999999999874
No 247
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=54.49 E-value=36 Score=37.04 Aligned_cols=107 Identities=19% Similarity=0.192 Sum_probs=78.1
Q ss_pred HHHhccCChHHHHHHHHHHHhhhccChHHHHHHhhhhhHHHHHHHhcCCChhHHHHHHHHHhhhhccccccceeecccCh
Q 001385 415 IAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESL 494 (1088)
Q Consensus 415 l~lL~~~~~~~~~~~l~~L~~L~~~sd~~~~~v~~~g~lp~L~~Ll~~~~~~vq~~Al~algnla~~~~~~~~~v~~~~~ 494 (1088)
+.-|.+.+......++.-|+.+...+..-+.+.+..+.+..|.....+.+.+.|.-+|+|++++--+.+--..++....+
T Consensus 124 iekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~f 203 (339)
T 3dad_A 124 LEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSDT 203 (339)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHHH
Confidence 34445556666777777788755345555778888888999999999999999999999999986654433344445667
Q ss_pred hhhhHhhhcCCchhHHHHHHHHHHhhc
Q 001385 495 RDLLMRLTVGPEPRVNKAAARALAILG 521 (1088)
Q Consensus 495 ~~~L~~ll~~~~~~v~~~a~~aL~~l~ 521 (1088)
+..+..+..+....|.+.|...|..+.
T Consensus 204 I~~lyslv~s~~~~V~k~AL~LL~v~V 230 (339)
T 3dad_A 204 IQWLYTLCASLSRLVVKTALKLLLVFV 230 (339)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCccHHHHHHHHHHHHHHH
Confidence 788888888877778777766665543
No 248
>1r88_A MPT51/MPB51 antigen; ALFA/beta hydrolase fold, FBPC1, immune system; 1.71A {Mycobacterium tuberculosis} SCOP: c.69.1.3
Probab=51.59 E-value=23 Score=37.45 Aligned_cols=54 Identities=20% Similarity=0.281 Sum_probs=33.3
Q ss_pred CCceEEEecCCCch----------HHHH----HHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhcC
Q 001385 538 QGLRILSMDGGGMK----------GLAT----VQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVK 593 (1088)
Q Consensus 538 ~~~riLsLdGGG~R----------G~~~----~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~~ 593 (1088)
.++.|++.|+||.. +-+. -.++..+++.++... +. =.|+|.|+||.+|+.++..
T Consensus 65 ~~~~vv~pd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~-~~-~~l~G~S~GG~~al~~a~~ 132 (280)
T 1r88_A 65 KGISVVAPAGGAYSMYTNWEQDGSKQWDTFLSAELPDWLAANRGLAP-GG-HAAVGAAQGGYGAMALAAF 132 (280)
T ss_dssp SSSEEEEECCCTTSTTSBCSSCTTCBHHHHHHTHHHHHHHHHSCCCS-SC-EEEEEETHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCccCCCCCCCCCcHHHHHHHHHHHHHHHHCCCCC-Cc-eEEEEECHHHHHHHHHHHh
Confidence 46889999987632 1121 123444455444321 11 1799999999999998753
No 249
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=50.80 E-value=96 Score=33.72 Aligned_cols=133 Identities=12% Similarity=0.127 Sum_probs=99.0
Q ss_pred HhccccCCchhhHHHHHCCCcHHHHHHhccCChHHHHHHHHHHHhhhccChHHHHHHhhh---hhHHHHHHHhcCCChhH
Q 001385 391 ALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTK---DVLKSLKLLCAHKNPEV 467 (1088)
Q Consensus 391 ~L~~L~~~~~~~~~l~~~~~~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd~~~~~v~~~---g~lp~L~~Ll~~~~~~v 467 (1088)
.|..-..+...+..++..+........+..+.-++...++..+..+...........+.. -.......|+.+.+.-.
T Consensus 146 mLRecir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVT 225 (341)
T 1upk_A 146 MLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVT 225 (341)
T ss_dssp HHHHHHTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchh
Confidence 344444455555667777777777777777778888889999998876544443333332 24667788999999999
Q ss_pred HHHHHHHHhhhhccccccc---eeecccChhhhhHhhhcCCchhHHHHHHHHHHhhcch
Q 001385 468 QRFALLAVGNLAFCLENRR---ILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGEN 523 (1088)
Q Consensus 468 q~~Al~algnla~~~~~~~---~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 523 (1088)
++.++.-+|.+-....|.. +-+.+...+.+++.++.++...|+-+|..+......+
T Consensus 226 kRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVAN 284 (341)
T 1upk_A 226 KRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVAN 284 (341)
T ss_dssp HHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeC
Confidence 9999999999988877763 3455667788899999999999999999887765544
No 250
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=47.93 E-value=46 Score=39.95 Aligned_cols=99 Identities=17% Similarity=0.162 Sum_probs=72.7
Q ss_pred HHHHHhccCChHHHHHHHHHHHhhhccChHHHHHHhhhhhHHHHHHHhcCCChhHHHHHHHHHhhhhccccccceeeccc
Q 001385 413 PIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSE 492 (1088)
Q Consensus 413 ~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd~~~~~v~~~g~lp~L~~Ll~~~~~~vq~~Al~algnla~~~~~~~~~v~~~ 492 (1088)
..+.++.+.+.+...-+.-++..++..+...... ++..+++-+.+.++-++-.|+++++++... + + -.
T Consensus 78 ~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L-----~iN~l~kDl~~~n~~ir~lALr~L~~i~~~--e----~-~~ 145 (621)
T 2vgl_A 78 EAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRL-----INNAIKNDLASRNPTFMGLALHCIANVGSR--E----M-AE 145 (621)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHHH-----HHHHHHHHHHSCCHHHHHHHHHHHHHHCCH--H----H-HH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHHH-----HHHHHHHhcCCCCHHHHHHHHHHhhccCCH--H----H-HH
Confidence 4466677777777777777777777544332321 356777778899999999999999998431 1 2 34
Q ss_pred ChhhhhHhhh--cCCchhHHHHHHHHHHhhcch
Q 001385 493 SLRDLLMRLT--VGPEPRVNKAAARALAILGEN 523 (1088)
Q Consensus 493 ~~~~~L~~ll--~~~~~~v~~~a~~aL~~l~~~ 523 (1088)
.+.+.+..++ .+.++.|++.|+.|+..+...
T Consensus 146 ~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~ 178 (621)
T 2vgl_A 146 AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRT 178 (621)
T ss_dssp HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh
Confidence 6778888888 889999999999999887653
No 251
>2wj6_A 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase; oxidoreductase, alpha/beta hydrolase; HET: ZZ8 SRT; 2.00A {Arthrobacter nitroguajacolicus} PDB: 2wj4_A* 2wj3_A* 2wm2_A*
Probab=46.72 E-value=27 Score=36.66 Aligned_cols=33 Identities=30% Similarity=0.333 Sum_probs=23.3
Q ss_pred HHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhc
Q 001385 556 VQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAV 592 (1088)
Q Consensus 556 ~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~ 592 (1088)
+.-+.++.+.++.. .+ .++|.|+||.||..++.
T Consensus 80 a~dl~~ll~~l~~~---~~-~lvGhSmGG~va~~~A~ 112 (276)
T 2wj6_A 80 VKDALEILDQLGVE---TF-LPVSHSHGGWVLVELLE 112 (276)
T ss_dssp HHHHHHHHHHHTCC---SE-EEEEEGGGHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC---ce-EEEEECHHHHHHHHHHH
Confidence 44455666666632 23 57999999999999975
No 252
>1dqz_A 85C, protein (antigen 85-C); fibronectin, structural genomics, PSI, protein structure initiative, TB structural genomics consortium; 1.50A {Mycobacterium tuberculosis} SCOP: c.69.1.3 PDB: 3hrh_A 1dqy_A 1va5_A* 1f0n_A* 1f0p_A*
Probab=46.49 E-value=30 Score=36.40 Aligned_cols=18 Identities=33% Similarity=0.298 Sum_probs=16.1
Q ss_pred eEEecchHHHHHHHHhcC
Q 001385 576 LVCGTSTGGMLAIALAVK 593 (1088)
Q Consensus 576 li~GTStG~iiA~~l~~~ 593 (1088)
.|+|.|+||.+|+.++..
T Consensus 117 ~l~G~S~GG~~al~~a~~ 134 (280)
T 1dqz_A 117 AAVGLSMSGGSALILAAY 134 (280)
T ss_dssp EEEEETHHHHHHHHHHHH
T ss_pred EEEEECHHHHHHHHHHHh
Confidence 799999999999998753
No 253
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=46.32 E-value=25 Score=45.98 Aligned_cols=105 Identities=15% Similarity=0.097 Sum_probs=72.0
Q ss_pred HHHHHhccCChHHHHHHHHHHHhhhccChHHHHHHhhhhhHHHHHHHhcCCChhHHHHHHHHHhhhhccccccceeeccc
Q 001385 413 PIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSE 492 (1088)
Q Consensus 413 ~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd~~~~~v~~~g~lp~L~~Ll~~~~~~vq~~Al~algnla~~~~~~~~~v~~~ 492 (1088)
.++.-+.+++++.+..++..|.+...........-....+++.|.+.+.+.++.+|..|..++++++...... . -.
T Consensus 10 ~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~--~--~~ 85 (1230)
T 1u6g_C 10 NLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY--Q--VE 85 (1230)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHH--H--HH
T ss_pred HHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHH--H--HH
Confidence 4555667778887777777666554221110001122356788888888999999999999999987544331 1 13
Q ss_pred ChhhhhHhhhcCCchhHHHHHHHHHHhhc
Q 001385 493 SLRDLLMRLTVGPEPRVNKAAARALAILG 521 (1088)
Q Consensus 493 ~~~~~L~~ll~~~~~~v~~~a~~aL~~l~ 521 (1088)
.+++.++..+.+.++.++..|+.++..+.
T Consensus 86 ~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~ 114 (1230)
T 1u6g_C 86 TIVDTLCTNMLSDKEQLRDISSIGLKTVI 114 (1230)
T ss_dssp HHHHHHHHHTTCSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 56777888888888899999999988775
No 254
>1tht_A Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1.13
Probab=44.15 E-value=24 Score=37.92 Aligned_cols=18 Identities=11% Similarity=0.030 Sum_probs=15.9
Q ss_pred eEEecchHHHHHHHHhcC
Q 001385 576 LVCGTSTGGMLAIALAVK 593 (1088)
Q Consensus 576 li~GTStG~iiA~~l~~~ 593 (1088)
.++|.|+||.+|..++..
T Consensus 109 ~lvGhSmGG~iA~~~A~~ 126 (305)
T 1tht_A 109 GLIAASLSARVAYEVISD 126 (305)
T ss_dssp EEEEETHHHHHHHHHTTT
T ss_pred EEEEECHHHHHHHHHhCc
Confidence 689999999999999753
No 255
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=41.63 E-value=73 Score=35.15 Aligned_cols=135 Identities=12% Similarity=-0.031 Sum_probs=67.3
Q ss_pred cccceeeccCChhhhhhHHHHhccccCCchhhHHHHHCCCcHHHHHHhccCChHHHHHHHHHHHhhhccChHHHHHHhhh
Q 001385 371 RQLISMISSDNRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTK 450 (1088)
Q Consensus 371 p~L~~L~Ls~N~~v~~~a~~~L~~L~~~~~~~~~l~~~~~~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd~~~~~v~~~ 450 (1088)
+.++......|+.|+..|+-+...+....++. ++ ++++.+-.++.+.++.++.+++.+|.++...+..
T Consensus 142 ~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~---v~-~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~-------- 209 (355)
T 3tjz_B 142 RYMKQAIVDKVPSVSSSALVSSLHLLKCSFDV---VK-RWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRL-------- 209 (355)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHH---HH-TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH--------
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHhccCHHH---HH-HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchH--------
Confidence 34555555667777777776666666554443 11 4566666666666666666677766666633211
Q ss_pred hhHHHHHHHhcCC---ChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcCCchhHHHHHHHHHHhhcc
Q 001385 451 DVLKSLKLLCAHK---NPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGE 522 (1088)
Q Consensus 451 g~lp~L~~Ll~~~---~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~ 522 (1088)
++..|+.-+... ++-.|..-++.++.+....+.+ ....+.+.+...+.+..+-|.-+|++++..+..
T Consensus 210 -a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~----~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~ 279 (355)
T 3tjz_B 210 -AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS----RDSPLFDFIESCLRNKHEMVVYEAASAIVNLPG 279 (355)
T ss_dssp -HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC---------------------CCCCCSSHHHHHHHHHHHTC---
T ss_pred -HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh----hHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC
Confidence 222333222221 3545555555555443332111 123455666777788888889898888876643
No 256
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=40.32 E-value=72 Score=33.53 Aligned_cols=141 Identities=16% Similarity=0.107 Sum_probs=81.7
Q ss_pred ceeeccCChhhhhhHHHHhccccCCch------hhHHHHHCCCcHHHHH-HhccCChHHHHHHHHHHHhhhccChHHHHH
Q 001385 374 ISMISSDNRHVVEQACSALSSLAGDVS------VAMLLMKCDIMQPIIA-VLKSFAPEEVKSVLQVVGQLAFASDTVAQK 446 (1088)
Q Consensus 374 ~~L~Ls~N~~v~~~a~~~L~~L~~~~~------~~~~l~~~~~~~~Ll~-lL~~~~~~~~~~~l~~L~~L~~~sd~~~~~ 446 (1088)
....-..|..+...++.++..+..... .........+++.|+. ++.+.....+..++.++..++......
T Consensus 61 kk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~--- 137 (278)
T 4ffb_C 61 AQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI--- 137 (278)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS---
T ss_pred HHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH---
Confidence 334446778888888887776653211 0111122233444443 355555666666777776665322111
Q ss_pred HhhhhhHHHHHHHhcCCChhHHHHHHHHHhhhh--ccccccc-eeecccChhhhhHhhhcCCchhHHHHHHHHHHhhc
Q 001385 447 MLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLA--FCLENRR-ILVTSESLRDLLMRLTVGPEPRVNKAAARALAILG 521 (1088)
Q Consensus 447 v~~~g~lp~L~~Ll~~~~~~vq~~Al~algnla--~~~~~~~-~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~ 521 (1088)
.-++..+...+.+.++.++..++..+..+. ||..... +.. -..+.+.+..++.+.++.||++|..++.-+.
T Consensus 138 ---~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~-l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly 211 (278)
T 4ffb_C 138 ---TQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTF-LPELLKHVPQLAGHGDRNVRSQTMNLIVEIY 211 (278)
T ss_dssp ---HHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHH-HHHHGGGHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhH-HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 112445556678999999998888877653 3322111 100 1135567778889999999999998876553
No 257
>1vkh_A Putative serine hydrolase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.85A {Saccharomyces cerevisiae} SCOP: c.69.1.32
Probab=38.97 E-value=47 Score=34.43 Aligned_cols=53 Identities=13% Similarity=0.093 Sum_probs=32.9
Q ss_pred CCCceEEEecCCCchH-----H--HHHHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhcC
Q 001385 537 KQGLRILSMDGGGMKG-----L--ATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVK 593 (1088)
Q Consensus 537 ~~~~riLsLdGGG~RG-----~--~~~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~~ 593 (1088)
..+++|+++|=.|.-. . -...+++.+.+..+.. .+ .++|.|+||.+|+.++..
T Consensus 75 ~~g~~vi~~d~r~~~~~~~~~~~~d~~~~~~~l~~~~~~~---~i-~l~G~S~GG~~a~~~a~~ 134 (273)
T 1vkh_A 75 ESTVCQYSIEYRLSPEITNPRNLYDAVSNITRLVKEKGLT---NI-NMVGHSVGATFIWQILAA 134 (273)
T ss_dssp TCCEEEEEECCCCTTTSCTTHHHHHHHHHHHHHHHHHTCC---CE-EEEEETHHHHHHHHHHTG
T ss_pred cCCcEEEEeecccCCCCCCCcHHHHHHHHHHHHHHhCCcC---cE-EEEEeCHHHHHHHHHHHH
Confidence 4578999998433211 1 1334455555544321 11 689999999999999853
No 258
>3afi_E Haloalkane dehalogenase; A/B-hydrolase, hydrolase; 1.75A {Bradyrhizobium japonicum} PDB: 3a2m_A* 3a2n_A 3a2l_A*
Probab=38.11 E-value=47 Score=35.54 Aligned_cols=50 Identities=22% Similarity=0.258 Sum_probs=32.1
Q ss_pred ceEEEec--CCC--------chHHHHHHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhcC
Q 001385 540 LRILSMD--GGG--------MKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVK 593 (1088)
Q Consensus 540 ~riLsLd--GGG--------~RG~~~~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~~ 593 (1088)
+||+++| |=| ..--..+.-+.++.+.++.. .+ .++|.|.||.||..++..
T Consensus 56 ~~via~Dl~G~G~S~~~~~~~~~~~~a~dl~~ll~~l~~~---~~-~lvGhS~Gg~va~~~A~~ 115 (316)
T 3afi_E 56 AHCIAPDLIGFGQSGKPDIAYRFFDHVRYLDAFIEQRGVT---SA-YLVAQDWGTALAFHLAAR 115 (316)
T ss_dssp SEEEEECCTTSTTSCCCSSCCCHHHHHHHHHHHHHHTTCC---SE-EEEEEEHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCC---CE-EEEEeCccHHHHHHHHHH
Confidence 7888887 312 11112445566666666632 23 689999999999999853
No 259
>1hkh_A Gamma lactamase; hydrolase, alpha/beta hydrolase, CO-factor free haloperoxidase,; 1.73A {Microbacterium} SCOP: c.69.1.12 PDB: 1hl7_A*
Probab=37.49 E-value=49 Score=34.22 Aligned_cols=51 Identities=22% Similarity=0.223 Sum_probs=30.4
Q ss_pred CCceEEEec--CCC-c------hHH-HHHHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhc
Q 001385 538 QGLRILSMD--GGG-M------KGL-ATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAV 592 (1088)
Q Consensus 538 ~~~riLsLd--GGG-~------RG~-~~~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~ 592 (1088)
+|++|+++| |=| . ..+ ..+.-+.++.+.++.. .+ .++|.|+||.+|+.++.
T Consensus 49 ~g~~vi~~D~~G~G~S~~~~~~~~~~~~~~dl~~~l~~l~~~---~~-~lvGhS~Gg~va~~~a~ 109 (279)
T 1hkh_A 49 QGYRVITYDRRGFGGSSKVNTGYDYDTFAADLHTVLETLDLR---DV-VLVGFSMGTGELARYVA 109 (279)
T ss_dssp TTEEEEEECCTTSTTSCCCSSCCSHHHHHHHHHHHHHHHTCC---SE-EEEEETHHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCC---ce-EEEEeChhHHHHHHHHH
Confidence 357888888 211 1 011 1234445555555432 22 68899999999998874
No 260
>1zoi_A Esterase; alpha/beta hydrolase fold; 1.60A {Pseudomonas putida} PDB: 4dgq_A
Probab=37.47 E-value=51 Score=34.01 Aligned_cols=51 Identities=20% Similarity=0.274 Sum_probs=29.4
Q ss_pred CCceEEEecCCC---c------hHH-HHHHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhc
Q 001385 538 QGLRILSMDGGG---M------KGL-ATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAV 592 (1088)
Q Consensus 538 ~~~riLsLdGGG---~------RG~-~~~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~ 592 (1088)
.|++|+++|==| . ..+ ..+.-+.++.+.++.. .+ .++|.|+||.+|+.++.
T Consensus 48 ~g~~vi~~D~~G~G~S~~~~~~~~~~~~~~d~~~~l~~l~~~---~~-~lvGhS~Gg~ia~~~a~ 108 (276)
T 1zoi_A 48 HGYRVVAHDRRGHGRSSQVWDGHDMDHYADDVAAVVAHLGIQ---GA-VHVGHSTGGGEVVRYMA 108 (276)
T ss_dssp TTCEEEEECCTTSTTSCCCSSCCSHHHHHHHHHHHHHHHTCT---TC-EEEEETHHHHHHHHHHH
T ss_pred CCCEEEEecCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCC---ce-EEEEECccHHHHHHHHH
Confidence 357888888311 1 111 1233444454544432 12 68999999999987653
No 261
>3v48_A Aminohydrolase, putative aminoacrylate hydrolase RUTD; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.10A {Escherichia coli SE11}
Probab=35.98 E-value=53 Score=33.96 Aligned_cols=33 Identities=21% Similarity=0.389 Sum_probs=22.6
Q ss_pred HHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhc
Q 001385 556 VQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAV 592 (1088)
Q Consensus 556 ~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~ 592 (1088)
+.-+.++.+.++.. .+ .++|.|+||.+|..++.
T Consensus 69 a~dl~~~l~~l~~~---~~-~lvGhS~GG~ia~~~A~ 101 (268)
T 3v48_A 69 AAELHQALVAAGIE---HY-AVVGHALGALVGMQLAL 101 (268)
T ss_dssp HHHHHHHHHHTTCC---SE-EEEEETHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCC---Ce-EEEEecHHHHHHHHHHH
Confidence 44455555555532 22 68999999999999875
No 262
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=35.19 E-value=3.4e+02 Score=33.93 Aligned_cols=52 Identities=23% Similarity=0.246 Sum_probs=31.6
Q ss_pred CCChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcCCchhHHHHHHHHHHhhc
Q 001385 462 HKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILG 521 (1088)
Q Consensus 462 ~~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~ 521 (1088)
+.+..||+.|..++|-+.++.++. +...+-.++.+.++.++..|++|+.++.
T Consensus 589 d~~d~VRraAViaLGlI~~g~~e~--------v~rlv~~L~~~~d~~VR~gAalALGli~ 640 (963)
T 4ady_A 589 DSNDDVRRAAVIALGFVLLRDYTT--------VPRIVQLLSKSHNAHVRCGTAFALGIAC 640 (963)
T ss_dssp CSCHHHHHHHHHHHHHHTSSSCSS--------HHHHTTTGGGCSCHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHhhccCCHHH--------HHHHHHHHHhcCCHHHHHHHHHHHHHhc
Confidence 455567777777777776665421 1222233445667777777777777654
No 263
>2pbl_A Putative esterase/lipase/thioesterase; alpha/beta-hydrolases fold, structural genomics, joint cente structural genomics, JCSG; 1.79A {Silicibacter SP} SCOP: c.69.1.2
Probab=35.00 E-value=44 Score=34.30 Aligned_cols=51 Identities=18% Similarity=0.174 Sum_probs=31.2
Q ss_pred CCceEEEecCCCchHHH-------HHHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhcC
Q 001385 538 QGLRILSMDGGGMKGLA-------TVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVK 593 (1088)
Q Consensus 538 ~~~riLsLdGGG~RG~~-------~~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~~ 593 (1088)
.|++|+++|-.|.-... ...+++.+.+..+.++ .++|.|+||.+|+.++..
T Consensus 92 ~G~~v~~~d~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~i-----~l~G~S~Gg~~a~~~a~~ 149 (262)
T 2pbl_A 92 KGWAVAMPSYELCPEVRISEITQQISQAVTAAAKEIDGPI-----VLAGHSAGGHLVARMLDP 149 (262)
T ss_dssp TTEEEEEECCCCTTTSCHHHHHHHHHHHHHHHHHHSCSCE-----EEEEETHHHHHHHHTTCT
T ss_pred CCCEEEEeCCCCCCCCChHHHHHHHHHHHHHHHHhccCCE-----EEEEECHHHHHHHHHhcc
Confidence 46899999976532211 1222333333322122 689999999999999754
No 264
>2vat_A Acetyl-COA--deacetylcephalosporin C acetyltransferase; A/B- hydrolase fold, acyltransferase, acetyl coenzyme A, antibiotic biosynthesis; HET: COA; 2.2A {Acremonium chrysogenum} SCOP: c.69.1.40 PDB: 2vav_A* 2vax_A*
Probab=34.84 E-value=51 Score=37.26 Aligned_cols=35 Identities=31% Similarity=0.450 Sum_probs=23.2
Q ss_pred HHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhcC
Q 001385 556 VQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVK 593 (1088)
Q Consensus 556 ~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~~ 593 (1088)
+..+.++.+.++.. ..=.++|.|+||++|+.++..
T Consensus 186 a~dl~~ll~~l~~~---~~~~lvGhSmGG~ial~~A~~ 220 (444)
T 2vat_A 186 VRIHRQVLDRLGVR---QIAAVVGASMGGMHTLEWAFF 220 (444)
T ss_dssp HHHHHHHHHHHTCC---CEEEEEEETHHHHHHHHHGGG
T ss_pred HHHHHHHHHhcCCc---cceEEEEECHHHHHHHHHHHh
Confidence 34455555555532 111689999999999999854
No 265
>1a8q_A Bromoperoxidase A1; haloperoxidase, oxidoreductase; 1.75A {Streptomyces aureofaciens} SCOP: c.69.1.12
Probab=34.84 E-value=55 Score=33.61 Aligned_cols=32 Identities=16% Similarity=0.097 Sum_probs=20.8
Q ss_pred HHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHh
Q 001385 556 VQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALA 591 (1088)
Q Consensus 556 ~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~ 591 (1088)
+.-+.++.+.++.. .+ .++|.|+||.+|+.++
T Consensus 73 ~~dl~~~l~~l~~~---~~-~lvGhS~Gg~ia~~~a 104 (274)
T 1a8q_A 73 ADDLNDLLTDLDLR---DV-TLVAHSMGGGELARYV 104 (274)
T ss_dssp HHHHHHHHHHTTCC---SE-EEEEETTHHHHHHHHH
T ss_pred HHHHHHHHHHcCCC---ce-EEEEeCccHHHHHHHH
Confidence 33445555554432 12 6899999999998765
No 266
>3i1i_A Homoserine O-acetyltransferase; structural genomics, IDP01610, O-acetyltransfera bacillus anthracis; HET: MSE; 2.44A {Bacillus anthracis str}
Probab=34.81 E-value=60 Score=34.99 Aligned_cols=35 Identities=34% Similarity=0.451 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhc
Q 001385 555 TVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAV 592 (1088)
Q Consensus 555 ~~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~ 592 (1088)
.+..+.++.+.++. +.+.+++|.|+||.+|..++.
T Consensus 132 ~~~d~~~~l~~l~~---~~~~ilvGhS~Gg~ia~~~a~ 166 (377)
T 3i1i_A 132 VARMQCELIKDMGI---ARLHAVMGPSAGGMIAQQWAV 166 (377)
T ss_dssp HHHHHHHHHHHTTC---CCBSEEEEETHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC---CcEeeEEeeCHhHHHHHHHHH
Confidence 34555555566553 234569999999999999875
No 267
>1sfr_A Antigen 85-A; alpha/beta hydrolase, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 2.70A {Mycobacterium tuberculosis} SCOP: c.69.1.3
Probab=33.68 E-value=60 Score=34.58 Aligned_cols=18 Identities=33% Similarity=0.368 Sum_probs=16.0
Q ss_pred eEEecchHHHHHHHHhcC
Q 001385 576 LVCGTSTGGMLAIALAVK 593 (1088)
Q Consensus 576 li~GTStG~iiA~~l~~~ 593 (1088)
.|+|.|+||.+|+.++..
T Consensus 122 ~l~G~S~GG~~al~~a~~ 139 (304)
T 1sfr_A 122 AVVGLSMAASSALTLAIY 139 (304)
T ss_dssp EEEEETHHHHHHHHHHHH
T ss_pred EEEEECHHHHHHHHHHHh
Confidence 799999999999998753
No 268
>1azw_A Proline iminopeptidase; aminopeptidase, serine protease, xanthomonas campestris; 2.70A {Xanthomonas citri} SCOP: c.69.1.7
Probab=33.62 E-value=60 Score=34.16 Aligned_cols=52 Identities=27% Similarity=0.305 Sum_probs=32.4
Q ss_pred CCceEEEecC---CCch--------HH-HHHHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhcC
Q 001385 538 QGLRILSMDG---GGMK--------GL-ATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVK 593 (1088)
Q Consensus 538 ~~~riLsLdG---GG~R--------G~-~~~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~~ 593 (1088)
++++|+++|= |... .+ ..+.-+.++.+.++.. .+ .++|.|+||.||..++..
T Consensus 59 ~~~~vi~~D~~G~G~S~~~~~~~~~~~~~~~~dl~~l~~~l~~~---~~-~lvGhSmGg~ia~~~a~~ 122 (313)
T 1azw_A 59 AKYRIVLFDQRGSGRSTPHADLVDNTTWDLVADIERLRTHLGVD---RW-QVFGGSWGSTLALAYAQT 122 (313)
T ss_dssp TTEEEEEECCTTSTTSBSTTCCTTCCHHHHHHHHHHHHHHTTCS---SE-EEEEETHHHHHHHHHHHH
T ss_pred CcceEEEECCCCCcCCCCCcccccccHHHHHHHHHHHHHHhCCC---ce-EEEEECHHHHHHHHHHHh
Confidence 5688999882 1111 11 1234455566665532 22 689999999999999753
No 269
>2q0x_A Protein DUF1749, uncharacterized protein; alpha/beta hydrolase fold, structural genomics, structural G of pathogenic protozoa consortium; 2.20A {Trypanosoma brucei}
Probab=33.50 E-value=53 Score=35.70 Aligned_cols=17 Identities=35% Similarity=0.354 Sum_probs=15.4
Q ss_pred eEEecchHHHHHHHHhc
Q 001385 576 LVCGTSTGGMLAIALAV 592 (1088)
Q Consensus 576 li~GTStG~iiA~~l~~ 592 (1088)
.++|.|+||.||+.++.
T Consensus 111 ~LvGhSmGG~iAl~~A~ 127 (335)
T 2q0x_A 111 ALFATSTGTQLVFELLE 127 (335)
T ss_dssp EEEEEGGGHHHHHHHHH
T ss_pred EEEEECHhHHHHHHHHH
Confidence 58999999999999875
No 270
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=33.47 E-value=1.3e+02 Score=33.06 Aligned_cols=133 Identities=12% Similarity=0.106 Sum_probs=88.0
Q ss_pred ceeeccCChhhhhhHHHHhccccCCchhhHHHHHCCCcHHHHHHhccCChHHHHHHHHHHHhhhccChHHHHHHhhhhhH
Q 001385 374 ISMISSDNRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVL 453 (1088)
Q Consensus 374 ~~L~Ls~N~~v~~~a~~~L~~L~~~~~~~~~l~~~~~~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd~~~~~v~~~g~l 453 (1088)
.++.-+.|..++.-..-.+..++...++. ++ ++..+..=+.++++..+..++++|..+.-.+ + -..+.
T Consensus 74 ~kl~~s~d~~lKrLvYLyl~~~~~~~~e~--iL---v~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~------m-~~~l~ 141 (355)
T 3tjz_B 74 TKLFQSNDPTLRRMCYLTIKEMSCIAEDV--II---VTSSLTKDMTGKEDSYRGPAVRALCQITDST------M-LQAIE 141 (355)
T ss_dssp HGGGGCCCHHHHHHHHHHHHHHTTTSSCG--GG---GHHHHHHHHHSSCHHHHHHHHHHHHHHCCTT------T-HHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHhCCCHHHH--HH---HHHHHHhhcCCCcHhHHHHHHHHHhcCCCHH------H-HHHHH
Confidence 34555566555555444454444432221 11 2334455567778887888999999887322 1 12456
Q ss_pred HHHHHHhcCCChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcCCchhHHHHHHHHHHhhcch
Q 001385 454 KSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGEN 523 (1088)
Q Consensus 454 p~L~~Ll~~~~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 523 (1088)
+.++..+.+.++-|++.|+.+...+.....+. + .++.+.+..++...++-|...|..++..+..+
T Consensus 142 ~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~---v--~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~ 206 (355)
T 3tjz_B 142 RYMKQAIVDKVPSVSSSALVSSLHLLKCSFDV---V--KRWVNEAQEAASSDNIMVQYHALGLLYHVRKN 206 (355)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHH---H--HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHhccCHHH---H--HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhh
Confidence 78888999999999999999988876554442 2 25777888888888888887777777777653
No 271
>1q0r_A RDMC, aclacinomycin methylesterase; anthracycline, hydrolase, polyketide, tailoring enzyme, structural proteomics in europe, spine; HET: AKT 1PE; 1.45A {Streptomyces purpurascens} SCOP: c.69.1.28 PDB: 1q0z_A*
Probab=33.47 E-value=64 Score=33.83 Aligned_cols=31 Identities=23% Similarity=0.226 Sum_probs=21.3
Q ss_pred HHHHHHHhcCCCCCcccceEEecchHHHHHHHHhc
Q 001385 558 ILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAV 592 (1088)
Q Consensus 558 vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~ 592 (1088)
-+.++.+.++.. .+ .++|.|.||.+|..++.
T Consensus 83 dl~~~l~~l~~~---~~-~lvGhS~Gg~ia~~~a~ 113 (298)
T 1q0r_A 83 DAVAVLDGWGVD---RA-HVVGLSMGATITQVIAL 113 (298)
T ss_dssp HHHHHHHHTTCS---SE-EEEEETHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC---ce-EEEEeCcHHHHHHHHHH
Confidence 444555555532 22 57899999999999875
No 272
>2wfl_A Polyneuridine-aldehyde esterase; alkaloid metabolism, monoterpenoid indole alkaloids, PNAE, hydrolase, serine esterase; HET: CME; 2.10A {Rauvolfia serpentina} PDB: 2wfm_A 3gzj_A*
Probab=33.36 E-value=51 Score=34.02 Aligned_cols=17 Identities=29% Similarity=0.258 Sum_probs=15.1
Q ss_pred eEEecchHHHHHHHHhc
Q 001385 576 LVCGTSTGGMLAIALAV 592 (1088)
Q Consensus 576 li~GTStG~iiA~~l~~ 592 (1088)
.++|.|+||.+|..++.
T Consensus 82 ~lvGhSmGG~va~~~a~ 98 (264)
T 2wfl_A 82 VLLGHSFGGMSLGLAME 98 (264)
T ss_dssp EEEEETTHHHHHHHHHH
T ss_pred EEEEeChHHHHHHHHHH
Confidence 68999999999988875
No 273
>1a8s_A Chloroperoxidase F; haloperoxidase, oxidoreductase, propionate complex; 1.80A {Pseudomonas fluorescens} SCOP: c.69.1.12
Probab=33.26 E-value=64 Score=33.09 Aligned_cols=50 Identities=24% Similarity=0.296 Sum_probs=29.1
Q ss_pred CCceEEEecCCC---c------hHH-HHHHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHh
Q 001385 538 QGLRILSMDGGG---M------KGL-ATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALA 591 (1088)
Q Consensus 538 ~~~riLsLdGGG---~------RG~-~~~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~ 591 (1088)
.|++|+++|==| . ..+ ..+.-+.++.+.++.. .+ .++|.|+||.+|+.++
T Consensus 45 ~g~~vi~~D~~G~G~S~~~~~~~~~~~~~~dl~~~l~~l~~~---~~-~lvGhS~Gg~ia~~~a 104 (273)
T 1a8s_A 45 QGYRVIAHDRRGHGRSSQPWSGNDMDTYADDLAQLIEHLDLR---DA-VLFGFSTGGGEVARYI 104 (273)
T ss_dssp TTCEEEEECCTTSTTSCCCSSCCSHHHHHHHHHHHHHHTTCC---SE-EEEEETHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCC---Ce-EEEEeChHHHHHHHHH
Confidence 357888887311 1 111 1234455555555432 22 6889999999998765
No 274
>1iup_A META-cleavage product hydrolase; aromatic compounds, cumene, isopropylbenzene, META-cleavage compound hydrolase; 1.60A {Pseudomonas fluorescens} SCOP: c.69.1.10 PDB: 1iun_A 1iuo_A 1uk6_A 1uk7_A 1uk8_A 1uk9_A 1uka_A 1ukb_A 2d0d_A
Probab=33.23 E-value=67 Score=33.47 Aligned_cols=32 Identities=28% Similarity=0.272 Sum_probs=21.7
Q ss_pred HHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhc
Q 001385 557 QILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAV 592 (1088)
Q Consensus 557 ~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~ 592 (1088)
.-+.++.+.++.. .+ .++|.|+||.+|+.++.
T Consensus 83 ~dl~~~l~~l~~~---~~-~lvGhS~GG~ia~~~A~ 114 (282)
T 1iup_A 83 DHIIGIMDALEIE---KA-HIVGNAFGGGLAIATAL 114 (282)
T ss_dssp HHHHHHHHHTTCC---SE-EEEEETHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC---ce-EEEEECHhHHHHHHHHH
Confidence 3444555555532 23 57899999999999985
No 275
>1xkl_A SABP2, salicylic acid-binding protein 2; alpha-beta protein, structural genomics, protein structure initiative, PSI; HET: STH; 2.00A {Nicotiana tabacum} SCOP: c.69.1.20 PDB: 1y7i_A* 1y7h_A*
Probab=32.53 E-value=49 Score=34.46 Aligned_cols=17 Identities=29% Similarity=0.307 Sum_probs=15.2
Q ss_pred eEEecchHHHHHHHHhc
Q 001385 576 LVCGTSTGGMLAIALAV 592 (1088)
Q Consensus 576 li~GTStG~iiA~~l~~ 592 (1088)
.++|.|+||.+|..++.
T Consensus 76 ~lvGhSmGG~va~~~a~ 92 (273)
T 1xkl_A 76 ILVGHSLGGMNLGLAME 92 (273)
T ss_dssp EEEEETTHHHHHHHHHH
T ss_pred EEEecCHHHHHHHHHHH
Confidence 68999999999998875
No 276
>2xua_A PCAD, 3-oxoadipate ENOL-lactonase; hydrolase, catechol metabolism; 1.90A {Burkholderia xenovorans}
Probab=32.20 E-value=70 Score=32.90 Aligned_cols=33 Identities=24% Similarity=0.278 Sum_probs=22.2
Q ss_pred HHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhc
Q 001385 556 VQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAV 592 (1088)
Q Consensus 556 ~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~ 592 (1088)
+.-+.++.+.++.. .+ .++|.|+||.+|..++.
T Consensus 79 ~~dl~~~l~~l~~~---~~-~lvGhS~Gg~va~~~A~ 111 (266)
T 2xua_A 79 TGDVLGLMDTLKIA---RA-NFCGLSMGGLTGVALAA 111 (266)
T ss_dssp HHHHHHHHHHTTCC---SE-EEEEETHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCC---ce-EEEEECHHHHHHHHHHH
Confidence 33444555555532 22 67899999999999875
No 277
>3om8_A Probable hydrolase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MES; 2.25A {Pseudomonas aeruginosa} SCOP: c.69.1.0
Probab=32.03 E-value=69 Score=33.10 Aligned_cols=33 Identities=24% Similarity=0.193 Sum_probs=22.6
Q ss_pred HHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhc
Q 001385 556 VQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAV 592 (1088)
Q Consensus 556 ~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~ 592 (1088)
+.-+.++.+.++.. .+ .++|.|+||.+|..++.
T Consensus 80 a~dl~~~l~~l~~~---~~-~lvGhS~Gg~va~~~A~ 112 (266)
T 3om8_A 80 GEDVLELLDALEVR---RA-HFLGLSLGGIVGQWLAL 112 (266)
T ss_dssp HHHHHHHHHHTTCS---CE-EEEEETHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC---ce-EEEEEChHHHHHHHHHH
Confidence 34455555555532 23 58899999999999875
No 278
>1a88_A Chloroperoxidase L; haloperoxidase, oxidoreductase; 1.90A {Streptomyces lividans} SCOP: c.69.1.12
Probab=31.66 E-value=68 Score=32.91 Aligned_cols=31 Identities=19% Similarity=0.130 Sum_probs=20.0
Q ss_pred HHHHHHHHhcCCCCCcccceEEecchHHHHHHHHh
Q 001385 557 QILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALA 591 (1088)
Q Consensus 557 ~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~ 591 (1088)
.-+.++.+.++.. .+ .++|.|+||.+|+.++
T Consensus 76 ~dl~~~l~~l~~~---~~-~lvGhS~Gg~ia~~~a 106 (275)
T 1a88_A 76 ADVAALTEALDLR---GA-VHIGHSTGGGEVARYV 106 (275)
T ss_dssp HHHHHHHHHHTCC---SE-EEEEETHHHHHHHHHH
T ss_pred HHHHHHHHHcCCC---ce-EEEEeccchHHHHHHH
Confidence 3444554554432 22 5789999999998754
No 279
>2xt0_A Haloalkane dehalogenase; hydrolase, alpha-beta hydrolase fold; 1.90A {Plesiocystis pacifica}
Probab=31.50 E-value=38 Score=35.92 Aligned_cols=52 Identities=21% Similarity=0.268 Sum_probs=32.7
Q ss_pred CCceEEEec--CCC-c---h--HHH----HHHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhcC
Q 001385 538 QGLRILSMD--GGG-M---K--GLA----TVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVK 593 (1088)
Q Consensus 538 ~~~riLsLd--GGG-~---R--G~~----~~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~~ 593 (1088)
.|+||+++| |=| . . .-+ .+.-+.++.+.++.. .+ .++|.|+||.||..++..
T Consensus 72 ~g~rvia~Dl~G~G~S~~~~~~~~~~~~~~a~dl~~ll~~l~~~---~~-~lvGhS~Gg~va~~~A~~ 135 (297)
T 2xt0_A 72 AGGRVVAPDLFGFGRSDKPTDDAVYTFGFHRRSLLAFLDALQLE---RV-TLVCQDWGGILGLTLPVD 135 (297)
T ss_dssp TTCEEEEECCTTSTTSCEESCGGGCCHHHHHHHHHHHHHHHTCC---SE-EEEECHHHHHHHTTHHHH
T ss_pred CCcEEEEeCCCCCCCCCCCCCcccCCHHHHHHHHHHHHHHhCCC---CE-EEEEECchHHHHHHHHHh
Confidence 358899988 322 1 0 122 344555666665532 23 578999999999999853
No 280
>1brt_A Bromoperoxidase A2; haloperoxidase, oxidoreductase, alpha/beta hydrolase fold, mutant M99T; 1.50A {Streptomyces aureofaciens} SCOP: c.69.1.12 PDB: 1bro_A 1a8u_A 1a7u_A
Probab=31.47 E-value=65 Score=33.29 Aligned_cols=33 Identities=15% Similarity=0.031 Sum_probs=22.3
Q ss_pred HHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhc
Q 001385 556 VQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAV 592 (1088)
Q Consensus 556 ~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~ 592 (1088)
+.-+.++.+.++.. .+ .++|.|+||.+|+.++.
T Consensus 77 a~dl~~~l~~l~~~---~~-~lvGhS~Gg~va~~~a~ 109 (277)
T 1brt_A 77 AADLNTVLETLDLQ---DA-VLVGFSTGTGEVARYVS 109 (277)
T ss_dssp HHHHHHHHHHHTCC---SE-EEEEEGGGHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC---ce-EEEEECccHHHHHHHHH
Confidence 34455555555532 22 67899999999998874
No 281
>2cjp_A Epoxide hydrolase; HET: PG4 VPR; 1.95A {Solanum tuberosum} PDB: 3cxu_A*
Probab=31.22 E-value=59 Score=34.63 Aligned_cols=35 Identities=17% Similarity=0.195 Sum_probs=22.6
Q ss_pred HHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhc
Q 001385 556 VQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAV 592 (1088)
Q Consensus 556 ~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~ 592 (1088)
+.-+.++.+.++..+ +.+ .++|.|+||.+|..++.
T Consensus 89 a~dl~~~l~~l~~~~-~~~-~lvGhS~Gg~ia~~~A~ 123 (328)
T 2cjp_A 89 VGDVVALLEAIAPNE-EKV-FVVAHDWGALIAWHLCL 123 (328)
T ss_dssp HHHHHHHHHHHCTTC-SSE-EEEEETHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCC-CCe-EEEEECHHHHHHHHHHH
Confidence 344455555555111 122 68899999999999975
No 282
>1wom_A RSBQ, sigma factor SIGB regulation protein RSBQ; alpha/beta hydrolase, signaling protein; 2.50A {Bacillus subtilis} PDB: 1wpr_A*
Probab=31.03 E-value=64 Score=33.29 Aligned_cols=17 Identities=18% Similarity=0.548 Sum_probs=15.2
Q ss_pred eEEecchHHHHHHHHhc
Q 001385 576 LVCGTSTGGMLAIALAV 592 (1088)
Q Consensus 576 li~GTStG~iiA~~l~~ 592 (1088)
.++|.|+||.+|..++.
T Consensus 93 ~lvGhS~GG~va~~~a~ 109 (271)
T 1wom_A 93 VFVGHSVGALIGMLASI 109 (271)
T ss_dssp EEEEETHHHHHHHHHHH
T ss_pred EEEEeCHHHHHHHHHHH
Confidence 68899999999998875
No 283
>1mtz_A Proline iminopeptidase; alpha-beta hydrolase, CAP domain, caged active site, prolyl peptidase; 1.80A {Thermoplasma acidophilum} SCOP: c.69.1.7 PDB: 1mt3_A 1mu0_A* 1xrr_A 1xrq_A 1xro_A 1xrn_A 1xrm_A 1xrp_A 1xrl_A* 1xqw_A* 1xqx_A* 1xqy_A 1xqv_A
Probab=30.52 E-value=56 Score=34.01 Aligned_cols=51 Identities=29% Similarity=0.456 Sum_probs=31.0
Q ss_pred CCceEEEecC---CCc----hHHH----HHHHHHHHHHhc-CCCCCcccceEEecchHHHHHHHHhc
Q 001385 538 QGLRILSMDG---GGM----KGLA----TVQILKEIEKGT-GKRIHELFDLVCGTSTGGMLAIALAV 592 (1088)
Q Consensus 538 ~~~riLsLdG---GG~----RG~~----~~~vL~~Le~~~-~~~i~~~FDli~GTStG~iiA~~l~~ 592 (1088)
.|++|+++|= |.. .+.+ .+.-+.++.+.+ +.. .+ .++|.|.||.+|..++.
T Consensus 54 ~g~~vi~~D~~G~G~S~~~~~~~~~~~~~~~dl~~~~~~l~~~~---~~-~lvGhS~Gg~va~~~a~ 116 (293)
T 1mtz_A 54 EGITVLFYDQFGCGRSEEPDQSKFTIDYGVEEAEALRSKLFGNE---KV-FLMGSSYGGALALAYAV 116 (293)
T ss_dssp GTEEEEEECCTTSTTSCCCCGGGCSHHHHHHHHHHHHHHHHTTC---CE-EEEEETHHHHHHHHHHH
T ss_pred cCcEEEEecCCCCccCCCCCCCcccHHHHHHHHHHHHHHhcCCC---cE-EEEEecHHHHHHHHHHH
Confidence 4688999883 111 1112 233344455554 422 22 68999999999999874
No 284
>3fcx_A FGH, esterase D, S-formylglutathione hydrolase; retinoblastoma, genetic marker, cytoplasm, cytoplasmic vesicle, polymorphism, serine esterase; 1.50A {Homo sapiens} SCOP: c.69.1.0
Probab=29.97 E-value=35 Score=35.35 Aligned_cols=18 Identities=39% Similarity=0.480 Sum_probs=16.0
Q ss_pred eEEecchHHHHHHHHhcC
Q 001385 576 LVCGTSTGGMLAIALAVK 593 (1088)
Q Consensus 576 li~GTStG~iiA~~l~~~ 593 (1088)
.++|.|+||.+|+.++..
T Consensus 144 ~l~G~S~GG~~a~~~a~~ 161 (282)
T 3fcx_A 144 SIFGHSMGGHGALICALK 161 (282)
T ss_dssp EEEEETHHHHHHHHHHHT
T ss_pred EEEEECchHHHHHHHHHh
Confidence 689999999999999864
No 285
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=29.88 E-value=27 Score=41.50 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=19.3
Q ss_pred cCceeeecccccCCCccCCCCCC
Q 001385 968 NGIRLSLLHGISGIGKSMPGATF 990 (1088)
Q Consensus 968 ~~~~~~~~~~~~~~~~~~~~~~~ 990 (1088)
.+.++.++.|+||+|||..+..+
T Consensus 145 ~~~~~v~I~G~~GiGKTtLa~~~ 167 (591)
T 1z6t_A 145 GEPGWVTIHGMAGCGKSVLAAEA 167 (591)
T ss_dssp TSCEEEEEECCTTSSHHHHHHHH
T ss_pred CCCceEEEEcCCCCCHHHHHHHH
Confidence 46789999999999999877554
No 286
>3g02_A Epoxide hydrolase; alpha/beta hydrolase fold, enantioselective, mutant, directed evolution; 1.50A {Aspergillus niger} SCOP: c.69.1.11 PDB: 1qo7_A 3g0i_A*
Probab=29.88 E-value=79 Score=35.59 Aligned_cols=54 Identities=11% Similarity=0.193 Sum_probs=34.9
Q ss_pred CCCceEEEecCC--C----------chHHHHHHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhcC
Q 001385 537 KQGLRILSMDGG--G----------MKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVK 593 (1088)
Q Consensus 537 ~~~~riLsLdGG--G----------~RG~~~~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~~ 593 (1088)
..|++|+++|== | ..--..+..+.++++.+|.. +.| +++|.|.||+||..++..
T Consensus 140 ~~gf~vv~~DlpG~G~S~~~~~~~~~~~~~~a~~~~~l~~~lg~~--~~~-~lvG~S~Gg~ia~~~A~~ 205 (408)
T 3g02_A 140 TLPFHLVVPSLPGYTFSSGPPLDKDFGLMDNARVVDQLMKDLGFG--SGY-IIQGGDIGSFVGRLLGVG 205 (408)
T ss_dssp TCCEEEEEECCTTSTTSCCSCSSSCCCHHHHHHHHHHHHHHTTCT--TCE-EEEECTHHHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCC--CCE-EEeCCCchHHHHHHHHHh
Confidence 457888887731 1 11123456677777776632 012 788999999999999853
No 287
>1b6g_A Haloalkane dehalogenase; hydrolase, alpha/beta-hydrolase; 1.15A {Xanthobacter autotrophicus} SCOP: c.69.1.8 PDB: 1be0_A 1cij_A 2yxp_X 1edd_A 1edb_A 2dhc_A 2dhe_A 2eda_A 2edc_A 2had_A 1ede_A 2pky_X 1bez_A 1bee_A 2dhd_A* 1hde_A
Probab=29.55 E-value=38 Score=36.21 Aligned_cols=51 Identities=22% Similarity=0.287 Sum_probs=32.5
Q ss_pred CceEEEec--CCC-c-----hHHH----HHHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhcC
Q 001385 539 GLRILSMD--GGG-M-----KGLA----TVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVK 593 (1088)
Q Consensus 539 ~~riLsLd--GGG-~-----RG~~----~~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~~ 593 (1088)
|+||+++| |=| . .+-+ .+.-+.++.+.++.. .+ .++|.|+||.||..++..
T Consensus 74 g~rvia~Dl~G~G~S~~~~~~~~y~~~~~a~dl~~ll~~l~~~---~~-~lvGhS~Gg~va~~~A~~ 136 (310)
T 1b6g_A 74 GARVIAPDFFGFGKSDKPVDEEDYTFEFHRNFLLALIERLDLR---NI-TLVVQDWGGFLGLTLPMA 136 (310)
T ss_dssp TCEEEEECCTTSTTSCEESCGGGCCHHHHHHHHHHHHHHHTCC---SE-EEEECTHHHHHHTTSGGG
T ss_pred CCeEEEeCCCCCCCCCCCCCcCCcCHHHHHHHHHHHHHHcCCC---CE-EEEEcChHHHHHHHHHHh
Confidence 47888887 311 1 1122 344556666666632 23 589999999999999864
No 288
>3icv_A Lipase B, CALB; circular permutation, cleavage on PAIR of basic residues, glycoprotein, hydrolase, lipid degradation, zymogen, disulf; HET: NAG BTB; 1.49A {Candida antarctica} PDB: 3icw_A*
Probab=29.44 E-value=70 Score=34.66 Aligned_cols=49 Identities=18% Similarity=0.150 Sum_probs=27.7
Q ss_pred CceEEEec--CCCchHHH-----HHHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHh
Q 001385 539 GLRILSMD--GGGMKGLA-----TVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALA 591 (1088)
Q Consensus 539 ~~riLsLd--GGG~RG~~-----~~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~ 591 (1088)
|+++.++| |-|...+. -...++++.+.++. +.+ .++|.|+||++|..++
T Consensus 94 Gy~V~a~DlpG~G~~~~~~~~~~la~~I~~l~~~~g~---~~v-~LVGHSmGGlvA~~al 149 (316)
T 3icv_A 94 GYTPCWISPPPFMLNDTQVNTEYMVNAITTLYAGSGN---NKL-PVLTWSQGGLVAQWGL 149 (316)
T ss_dssp TCEEEEECCTTTTCSCHHHHHHHHHHHHHHHHHHTTS---CCE-EEEEETHHHHHHHHHH
T ss_pred CCeEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHhCC---Cce-EEEEECHHHHHHHHHH
Confidence 57888888 33322221 12233444444442 234 4779999999996654
No 289
>1gpl_A RP2 lipase; serine esterase, hydrolase, lipid degradation, pancreas, glycoprotein, chimeric; 2.01A {Cavia porcellus} SCOP: b.12.1.2 c.69.1.19 PDB: 1lpb_B* 1lpa_B* 1n8s_A
Probab=28.80 E-value=47 Score=37.79 Aligned_cols=53 Identities=11% Similarity=0.080 Sum_probs=31.8
Q ss_pred CceEEEecCCCchH--------------HHHHHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhcC
Q 001385 539 GLRILSMDGGGMKG--------------LATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVK 593 (1088)
Q Consensus 539 ~~riLsLdGGG~RG--------------~~~~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~~ 593 (1088)
+++|+++|-.|.-. ..-..+++.|.+..+.... .+ .++|.|.||.+|+.+|..
T Consensus 100 ~~~Vi~~D~~g~g~s~~~~~~~~~~~~~~dl~~~i~~l~~~~g~~~~-~i-~lvGhSlGg~vA~~~a~~ 166 (432)
T 1gpl_A 100 KVNCICVDWKGGSKAQYSQASQNIRVVGAEVAYLVQVLSTSLNYAPE-NV-HIIGHSLGAHTAGEAGKR 166 (432)
T ss_dssp CEEEEEEECHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCGG-GE-EEEEETHHHHHHHHHHHT
T ss_pred CcEEEEEECccccCccchhhHhhHHHHHHHHHHHHHHHHHhcCCCcc-cE-EEEEeCHHHHHHHHHHHh
Confidence 58899988533210 1123344455444443322 22 688999999999988753
No 290
>1ufo_A Hypothetical protein TT1662; alpha-beta fold, hydrolase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.60A {Thermus thermophilus} SCOP: c.69.1.27
Probab=28.72 E-value=60 Score=32.11 Aligned_cols=18 Identities=28% Similarity=0.451 Sum_probs=15.9
Q ss_pred eEEecchHHHHHHHHhcC
Q 001385 576 LVCGTSTGGMLAIALAVK 593 (1088)
Q Consensus 576 li~GTStG~iiA~~l~~~ 593 (1088)
.++|.|.||.+|+.++..
T Consensus 108 ~l~G~S~Gg~~a~~~a~~ 125 (238)
T 1ufo_A 108 FLAGGSLGAFVAHLLLAE 125 (238)
T ss_dssp EEEEETHHHHHHHHHHHT
T ss_pred EEEEEChHHHHHHHHHHh
Confidence 689999999999998753
No 291
>2b61_A Homoserine O-acetyltransferase; acyl-enzyme, aspartate pathway, coenzyme A, structure-functi studies, alpha-beta hydrolase fold; 1.65A {Haemophilus influenzae} SCOP: c.69.1.40
Probab=28.16 E-value=81 Score=34.14 Aligned_cols=34 Identities=29% Similarity=0.388 Sum_probs=22.8
Q ss_pred HHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhc
Q 001385 556 VQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAV 592 (1088)
Q Consensus 556 ~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~ 592 (1088)
+..+.++.+.++.. .+.+++|.|.||.+|+.++.
T Consensus 140 ~~~l~~~l~~l~~~---~~~~lvGhS~Gg~ia~~~a~ 173 (377)
T 2b61_A 140 VKVQKALLEHLGIS---HLKAIIGGSFGGMQANQWAI 173 (377)
T ss_dssp HHHHHHHHHHTTCC---CEEEEEEETHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCc---ceeEEEEEChhHHHHHHHHH
Confidence 44455555554422 23348999999999999874
No 292
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=27.50 E-value=3e+02 Score=28.84 Aligned_cols=65 Identities=14% Similarity=-0.006 Sum_probs=49.9
Q ss_pred hHHHHHHHhcCCChhHHHHHHHHHhhhh--ccccccceeecccChh---hhhHhhhcCCchhHHHHHHHHHHhhcch
Q 001385 452 VLKSLKLLCAHKNPEVQRFALLAVGNLA--FCLENRRILVTSESLR---DLLMRLTVGPEPRVNKAAARALAILGEN 523 (1088)
Q Consensus 452 ~lp~L~~Ll~~~~~~vq~~Al~algnla--~~~~~~~~~v~~~~~~---~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 523 (1088)
+.+.+.+-+.+++.+.+...+..++.+. +|.. . ...+ +.+..++..++..|+..|..++.-+..+
T Consensus 168 v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~-~------~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~ 237 (266)
T 2of3_A 168 MTPMLLDALKSKNARQRSECLLVIEYYITNAGIS-P------LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKF 237 (266)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG-G------GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC-c------cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 5667777788999999998888888773 3333 1 2356 8889999999999999999988765544
No 293
>3ibt_A 1H-3-hydroxy-4-oxoquinoline 2,4-dioxygenase; QDO, oxidoreductase; 2.60A {Pseudomonas putida}
Probab=27.42 E-value=94 Score=31.33 Aligned_cols=33 Identities=27% Similarity=0.269 Sum_probs=21.7
Q ss_pred HHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhc
Q 001385 556 VQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAV 592 (1088)
Q Consensus 556 ~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~ 592 (1088)
+.-+.++.+.++.. .+ .++|.|.||.+|+.++.
T Consensus 74 ~~~~~~~l~~l~~~---~~-~lvGhS~Gg~ia~~~a~ 106 (264)
T 3ibt_A 74 AQDLLAFIDAKGIR---DF-QMVSTSHGCWVNIDVCE 106 (264)
T ss_dssp HHHHHHHHHHTTCC---SE-EEEEETTHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCC---ce-EEEecchhHHHHHHHHH
Confidence 33444444444422 12 67899999999999975
No 294
>3ezo_A Malonyl COA-acyl carrier protein transacylase; ssgcid, acyl-carrier-protein S-malonyltransferase, acyltransferase, transferase; 2.05A {Burkholderia pseudomallei 1710B}
Probab=27.39 E-value=1e+02 Score=33.33 Aligned_cols=50 Identities=16% Similarity=0.224 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhcCCCCHHHHHHHHHHhh
Q 001385 554 ATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLG 608 (1088)
Q Consensus 554 ~~~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~~~~s~~e~~~~y~~~~ 608 (1088)
+++...+.+.+..|.+ .|.++|.|.|=+.|+..+ +-++.++..++...-+
T Consensus 75 ~~~al~~~l~~~~Gi~----P~~v~GHSlGE~aAa~~A-G~ls~edal~lv~~Rg 124 (318)
T 3ezo_A 75 AAYACYRAWQQAGGAQ----PSIVAGHSLGEYTALVAA-GAIAFRDALPLVRFRA 124 (318)
T ss_dssp HHHHHHHHHHHTTCCC----CSEEEESTHHHHHHHHHT-TSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCC----CcEEEECCHHHHHHHHHh-CCCCHHHHHHHHHHHH
Confidence 4455555666544544 589999999999988875 5689999988765444
No 295
>1pja_A Palmitoyl-protein thioesterase 2 precursor; hydrolase, glycoprotein, lysosome; HET: NAG; 2.70A {Homo sapiens} SCOP: c.69.1.13
Probab=27.21 E-value=77 Score=33.14 Aligned_cols=18 Identities=28% Similarity=0.289 Sum_probs=15.7
Q ss_pred eEEecchHHHHHHHHhcC
Q 001385 576 LVCGTSTGGMLAIALAVK 593 (1088)
Q Consensus 576 li~GTStG~iiA~~l~~~ 593 (1088)
.++|.|.||.+|..++..
T Consensus 106 ~lvGhS~Gg~ia~~~a~~ 123 (302)
T 1pja_A 106 HLICYSQGGLVCRALLSV 123 (302)
T ss_dssp EEEEETHHHHHHHHHHHH
T ss_pred EEEEECHHHHHHHHHHHh
Confidence 688999999999998753
No 296
>3fsg_A Alpha/beta superfamily hydrolase; PF00561, MCSG, PSI, PSI-2, structural genomics, protein structure initiative, midwest for structural genomics; 2.00A {Oenococcus oeni}
Probab=27.09 E-value=97 Score=31.18 Aligned_cols=51 Identities=33% Similarity=0.458 Sum_probs=29.8
Q ss_pred CCceEEEecCCCc---------hHHHHHHHH-HHHHHhcCCCCCcccceEEecchHHHHHHHHhc
Q 001385 538 QGLRILSMDGGGM---------KGLATVQIL-KEIEKGTGKRIHELFDLVCGTSTGGMLAIALAV 592 (1088)
Q Consensus 538 ~~~riLsLdGGG~---------RG~~~~~vL-~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~ 592 (1088)
.+++|+++|=-|. .---.+.-+ +.+++..+.. .+ .++|.|.||.+|+.++.
T Consensus 48 ~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~l~~~~~~~---~~-~l~G~S~Gg~~a~~~a~ 108 (272)
T 3fsg_A 48 GQYQRIYLDLPGMGNSDPISPSTSDNVLETLIEAIEEIIGAR---RF-ILYGHSYGGYLAQAIAF 108 (272)
T ss_dssp TTSEEEEECCTTSTTCCCCSSCSHHHHHHHHHHHHHHHHTTC---CE-EEEEEEHHHHHHHHHHH
T ss_pred CceEEEEecCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCC---cE-EEEEeCchHHHHHHHHH
Confidence 6899999984321 011122223 3333323321 12 68999999999999874
No 297
>2fx5_A Lipase; alpha-beta hydrolase; HET: TLA; 1.80A {Pseudomonas mendocina}
Probab=27.01 E-value=67 Score=32.98 Aligned_cols=54 Identities=15% Similarity=0.193 Sum_probs=30.2
Q ss_pred CCceEEEecCCC-chHHHHHHHHHHHHHhcC---CCCCcccc----eEEecchHHHHHHHHh
Q 001385 538 QGLRILSMDGGG-MKGLATVQILKEIEKGTG---KRIHELFD----LVCGTSTGGMLAIALA 591 (1088)
Q Consensus 538 ~~~riLsLdGGG-~RG~~~~~vL~~Le~~~~---~~i~~~FD----li~GTStG~iiA~~l~ 591 (1088)
.|++|+++|--| .+.--...+++.+.+... ..+...+| .++|.|+||.+|+.++
T Consensus 75 ~G~~v~~~d~~~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~a 136 (258)
T 2fx5_A 75 HGFVVAAAETSNAGTGREMLACLDYLVRENDTPYGTYSGKLNTGRVGTSGHSQGGGGSIMAG 136 (258)
T ss_dssp HTCEEEEECCSCCTTSHHHHHHHHHHHHHHHSSSSTTTTTEEEEEEEEEEEEHHHHHHHHHT
T ss_pred CCeEEEEecCCCCccHHHHHHHHHHHHhcccccccccccccCccceEEEEEChHHHHHHHhc
Confidence 368888888632 222222234444443211 00111122 5889999999999987
No 298
>3sty_A Methylketone synthase 1; alpha/beta hydrolase, decarboxylase, hydrolase; HET: DKA; 1.70A {Lycopersicon hirsutum F} PDB: 3stu_A* 3stt_A* 3stv_A* 3stw_A* 3stx_A*
Probab=27.01 E-value=74 Score=32.17 Aligned_cols=17 Identities=18% Similarity=0.368 Sum_probs=15.6
Q ss_pred eEEecchHHHHHHHHhc
Q 001385 576 LVCGTSTGGMLAIALAV 592 (1088)
Q Consensus 576 li~GTStG~iiA~~l~~ 592 (1088)
.++|.|.||.+|+.++.
T Consensus 84 ~lvGhS~Gg~ia~~~a~ 100 (267)
T 3sty_A 84 ILVGHALGGLAISKAME 100 (267)
T ss_dssp EEEEETTHHHHHHHHHH
T ss_pred EEEEEcHHHHHHHHHHH
Confidence 78999999999999875
No 299
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=26.97 E-value=2.3e+02 Score=30.75 Aligned_cols=183 Identities=14% Similarity=0.026 Sum_probs=101.3
Q ss_pred hHHHHhccccCCchhh-HHHHHCCCcHHHHHHhccCChHHHHHHHHHHHhhhccChHHHH-HHhhhhhHHHHHHHh-cCC
Q 001385 387 QACSALSSLAGDVSVA-MLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQ-KMLTKDVLKSLKLLC-AHK 463 (1088)
Q Consensus 387 ~a~~~L~~L~~~~~~~-~~l~~~~~~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd~~~~-~v~~~g~lp~L~~Ll-~~~ 463 (1088)
-+...|+-+- +.+++ +-.++.+++..+.+++.-++.+.+..++..|-+.. |..+- ..=-...+|-+..++ .++
T Consensus 262 R~FDLL~LLm-HdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVS---DaksL~~t~L~e~LPFi~~~i~~h~ 337 (619)
T 3c2g_A 262 RTFDLLGLLL-HDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVS---DAKALAKTPLENILPFLLRLIEIHP 337 (619)
T ss_dssp HHHHHHHHHC-CSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHT---TCGGGGTSCCTTHHHHHHHHHHHCC
T ss_pred HHHHHHHHHh-cccccccceeecccceeEEEEeecCCcHHHHhhhheeeeec---chHHHhhccccccchHHHHHhccCC
Confidence 3444454444 45555 88999999999999999999999988888765443 22211 111123455554444 477
Q ss_pred ChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhh-------cCCchhHHHHHHHHHHhhcchHHHHHhhhcCCCC
Q 001385 464 NPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLT-------VGPEPRVNKAAARALAILGENESLRRAIRGRQVP 536 (1088)
Q Consensus 464 ~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll-------~~~~~~v~~~a~~aL~~l~~~~~~r~~~~~~~~~ 536 (1088)
+..|.-....-++|.+.+..-...+.+..++..+|.... .-.+..-++.||..+.+.-..-..--.+=-....
T Consensus 338 eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~N 417 (619)
T 3c2g_A 338 DDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPN 417 (619)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTT
T ss_pred CcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCC
Confidence 777755566667888777766666777788888776643 2234445666776665443221111111101111
Q ss_pred CCCceEEEecCCCchHHHHHHHHHHHHHhcCCCCCcccce
Q 001385 537 KQGLRILSMDGGGMKGLATVQILKEIEKGTGKRIHELFDL 576 (1088)
Q Consensus 537 ~~~~riLsLdGGG~RG~~~~~vL~~Le~~~~~~i~~~FDl 576 (1088)
++...+=--+---++-.+...+||+|+.-+. ++.||+
T Consensus 418 Gqr~~~G~~EqQQVckFIE~d~LKrLMtCLS---~e~fDv 454 (619)
T 3c2g_A 418 GETKTAGPNEKQQVCKFIEIDILKKLMSCLS---CEGMDT 454 (619)
T ss_dssp SCCCCCCHHHHHHHHGGGSHHHHHHHHHHHH---CCC-CC
T ss_pred CccccCChHHHHHHHHHHHHHHHHHHHHHhc---ccccCc
Confidence 1111100000012455667778888876533 455664
No 300
>3dqz_A Alpha-hydroxynitrIle lyase-like protein; A/B-hydrloase fold, cyanogenesis; 2.50A {Arabidopsis thaliana} SCOP: c.69.1.0
Probab=26.95 E-value=74 Score=31.96 Aligned_cols=18 Identities=28% Similarity=0.281 Sum_probs=16.1
Q ss_pred eEEecchHHHHHHHHhcC
Q 001385 576 LVCGTSTGGMLAIALAVK 593 (1088)
Q Consensus 576 li~GTStG~iiA~~l~~~ 593 (1088)
.++|.|.||.+|+.++..
T Consensus 76 ~lvGhS~Gg~~a~~~a~~ 93 (258)
T 3dqz_A 76 ILVGFSFGGINIALAADI 93 (258)
T ss_dssp EEEEETTHHHHHHHHHTT
T ss_pred EEEEeChhHHHHHHHHHh
Confidence 689999999999999864
No 301
>3e0x_A Lipase-esterase related protein; APC60309, clostridium acetobutylicum ATCC 824, structural genomics, PSI-2; HET: MSE; 1.45A {Clostridium acetobutylicum}
Probab=26.87 E-value=84 Score=31.02 Aligned_cols=18 Identities=33% Similarity=0.623 Sum_probs=16.0
Q ss_pred eEEecchHHHHHHHHhcC
Q 001385 576 LVCGTSTGGMLAIALAVK 593 (1088)
Q Consensus 576 li~GTStG~iiA~~l~~~ 593 (1088)
.++|.|.||.+|+.++..
T Consensus 87 ~l~G~S~Gg~~a~~~a~~ 104 (245)
T 3e0x_A 87 TLIGYSMGGAIVLGVALK 104 (245)
T ss_dssp EEEEETHHHHHHHHHHTT
T ss_pred EEEEeChhHHHHHHHHHH
Confidence 689999999999999764
No 302
>1hpl_A Lipase; hydrolase(carboxylic esterase); 2.30A {Equus caballus} SCOP: b.12.1.2 c.69.1.19
Probab=26.85 E-value=57 Score=37.32 Aligned_cols=52 Identities=10% Similarity=0.045 Sum_probs=30.7
Q ss_pred CceEEEecCCCc-h-----H--------HHHHHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhc
Q 001385 539 GLRILSMDGGGM-K-----G--------LATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAV 592 (1088)
Q Consensus 539 ~~riLsLdGGG~-R-----G--------~~~~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~ 592 (1088)
+++|+++|=.|. + . ..-..+++.|.+..+..+ +.+ .++|.|+||.+|+.+|.
T Consensus 99 ~~~VI~vD~~g~g~s~y~~~~~~~~~v~~~la~ll~~L~~~~g~~~-~~v-~LIGhSlGg~vA~~~a~ 164 (449)
T 1hpl_A 99 SVNCICVDWKSGSRTAYSQASQNVRIVGAEVAYLVGVLQSSFDYSP-SNV-HIIGHSLGSHAAGEAGR 164 (449)
T ss_dssp CEEEEEEECHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCG-GGE-EEEEETHHHHHHHHHHH
T ss_pred CeEEEEEeCCcccCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-ccE-EEEEECHhHHHHHHHHH
Confidence 478888884331 1 1 112234445544434332 222 58999999999999875
No 303
>3qit_A CURM TE, polyketide synthase; thioesterase, alpha/beta hydrolase, decarboxylase, sulfate elimination, terminal alkene production; 1.68A {Lyngbya majuscula 19L}
Probab=26.76 E-value=77 Score=32.09 Aligned_cols=50 Identities=28% Similarity=0.394 Sum_probs=30.1
Q ss_pred CceEEEecCCCc------------hHHHHHHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhc
Q 001385 539 GLRILSMDGGGM------------KGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAV 592 (1088)
Q Consensus 539 ~~riLsLdGGG~------------RG~~~~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~ 592 (1088)
|++|+++|--|. .---.+..+.++.+.++.+ .+ .++|.|.||.+|..++.
T Consensus 53 G~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~l~G~S~Gg~~a~~~a~ 114 (286)
T 3qit_A 53 GYRVVAPDLFGHGRSSHLEMVTSYSSLTFLAQIDRVIQELPDQ---PL-LLVGHSMGAMLATAIAS 114 (286)
T ss_dssp TCEEEEECCTTSTTSCCCSSGGGCSHHHHHHHHHHHHHHSCSS---CE-EEEEETHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCC---CE-EEEEeCHHHHHHHHHHH
Confidence 688888874321 0112233444444444421 12 68899999999999874
No 304
>3tqe_A Malonyl-COA-[acyl-carrier-protein] transacylase; fatty acid/phospholipid metabolism, transferase; HET: MSE; 1.50A {Coxiella burnetii}
Probab=26.28 E-value=1.1e+02 Score=33.02 Aligned_cols=51 Identities=22% Similarity=0.317 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhcCCCCHHHHHHHHHHhh
Q 001385 553 LATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLG 608 (1088)
Q Consensus 553 ~~~~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~~~~s~~e~~~~y~~~~ 608 (1088)
++++.+.+.+++..|.+ .|+++|.|.|=+.|+..+ +-++.++..++-..-+
T Consensus 72 a~~~al~~~l~~~~gi~----P~~v~GHSlGE~aAa~~A-G~ls~~da~~lv~~Rg 122 (316)
T 3tqe_A 72 TADVAIFRCWEALGGPK----PQVMAGHSLGEYAALVCA-GALKFEEAVKLVEKRG 122 (316)
T ss_dssp HHHHHHHHHHHHTTCCC----CSEEEESTHHHHHHHHHT-TSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCC----CcEEEECCHHHHHHHHHh-CCCCHHHHHHHHHHHH
Confidence 34556666666644543 589999999999988875 5589999888765433
No 305
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=26.21 E-value=53 Score=28.90 Aligned_cols=44 Identities=11% Similarity=0.071 Sum_probs=28.1
Q ss_pred ccchhhcCCCCCccEEEeeCCCCCCCCccccccCccccEEeCcCC
Q 001385 115 GVEMRVVKRREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTS 159 (1088)
Q Consensus 115 ~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~N 159 (1088)
.+...+|.++.+|+.+.+-.+ ++..-..+|.+|.+|+.+.+...
T Consensus 10 ~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 10 GMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp SSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred EecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 344467777777777777665 44444456777777777766654
No 306
>3k89_A Malonyl COA-ACP transacylase; bacterial blight, XOO0880, FABD, xanthomonas oryzae PV. ORYZ KACC10331, transferase; 1.60A {Xanthomonas oryzae PV} PDB: 3een_A 3r97_A*
Probab=26.18 E-value=85 Score=33.89 Aligned_cols=51 Identities=24% Similarity=0.326 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhcCCCCHHHHHHHHHHhh
Q 001385 553 LATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLG 608 (1088)
Q Consensus 553 ~~~~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~~~~s~~e~~~~y~~~~ 608 (1088)
++++.+.+.+.+..|.+ .|+++|.|.|=+.|+..+ +-++.++..++...-+
T Consensus 70 a~~~al~~~l~~~~Gi~----P~~v~GhSlGE~aAa~~a-G~ls~~da~~lv~~Rg 120 (314)
T 3k89_A 70 AAGVAVWRLWTAQRGQR----PALLAGHSLGEYTALVAA-GVLSLHDGAHLVRLRG 120 (314)
T ss_dssp HHHHHHHHHHHHTTCCE----EEEEEESTHHHHHHHHHT-TSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCC----CcEEEECCHHHHHHHHHh-CCCCHHHHHHHHHHHH
Confidence 34555556666544543 699999999999988875 5689999988765433
No 307
>1uxo_A YDEN protein; hydrolase, A/B hydrolase, esterase, PSI, protein structure initiative, MCSG, midwest center for structural genomics; 1.8A {Bacillus subtilis} SCOP: c.69.1.31
Probab=26.06 E-value=59 Score=31.36 Aligned_cols=54 Identities=11% Similarity=-0.004 Sum_probs=29.0
Q ss_pred CCceEEEecCCCchHHHHHHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhcC
Q 001385 538 QGLRILSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVK 593 (1088)
Q Consensus 538 ~~~riLsLdGGG~RG~~~~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~~ 593 (1088)
.+++++++|--....-..-...+.+.+.+..- .+.+ .++|.|+||.+|+.++..
T Consensus 32 ~g~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~l~G~S~Gg~~a~~~a~~ 85 (192)
T 1uxo_A 32 DGVQADILNMPNPLQPRLEDWLDTLSLYQHTL-HENT-YLVAHSLGCPAILRFLEH 85 (192)
T ss_dssp TTCEEEEECCSCTTSCCHHHHHHHHHTTGGGC-CTTE-EEEEETTHHHHHHHHHHT
T ss_pred CCcEEEEecCCCCCCCCHHHHHHHHHHHHHhc-cCCE-EEEEeCccHHHHHHHHHH
Confidence 35777777654211111222333333332211 1222 689999999999998753
No 308
>1zi8_A Carboxymethylenebutenolidase; alpha and beta proteins, 3-D structure, serine esterase, HYD aromatic hydrocarbons, catabolism; 1.40A {Pseudomonas putida} PDB: 1zj5_A* 1zi9_A 1zi6_A 1zj4_A* 1din_A 1ziy_A* 1zic_A 1zix_A 1ggv_A*
Probab=25.80 E-value=42 Score=33.53 Aligned_cols=18 Identities=44% Similarity=0.521 Sum_probs=15.9
Q ss_pred eEEecchHHHHHHHHhcC
Q 001385 576 LVCGTSTGGMLAIALAVK 593 (1088)
Q Consensus 576 li~GTStG~iiA~~l~~~ 593 (1088)
.++|.|.||.+|+.++..
T Consensus 118 ~l~G~S~Gg~~a~~~a~~ 135 (236)
T 1zi8_A 118 GLVGYSLGGALAFLVASK 135 (236)
T ss_dssp EEEEETHHHHHHHHHHHH
T ss_pred EEEEECcCHHHHHHHhcc
Confidence 689999999999999754
No 309
>1rp1_A Pancreatic lipase related protein 1; hydrolase, lipid degradation; HET: NAG; 2.10A {Canis lupus familiaris} SCOP: b.12.1.2 c.69.1.19 PDB: 2ppl_A
Probab=25.69 E-value=62 Score=37.05 Aligned_cols=54 Identities=13% Similarity=0.108 Sum_probs=31.6
Q ss_pred CCceEEEecCCCc------hHH--------HHHHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhcC
Q 001385 538 QGLRILSMDGGGM------KGL--------ATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVK 593 (1088)
Q Consensus 538 ~~~riLsLdGGG~------RG~--------~~~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~~ 593 (1088)
.+++|+++|=.|. ... .-..+++.|.+..+..+. .+ .++|.|+||.||+.+|..
T Consensus 99 ~~~~VI~vD~~g~g~s~y~~~~~~~~~~a~~l~~ll~~L~~~~g~~~~-~v-~LVGhSlGg~vA~~~a~~ 166 (450)
T 1rp1_A 99 EEVNCICVDWKKGSQTSYTQAANNVRVVGAQVAQMLSMLSANYSYSPS-QV-QLIGHSLGAHVAGEAGSR 166 (450)
T ss_dssp CCEEEEEEECHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCGG-GE-EEEEETHHHHHHHHHHHT
T ss_pred CCeEEEEEeCccccCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCChh-hE-EEEEECHhHHHHHHHHHh
Confidence 3588999884321 111 122334445434343322 22 589999999999998864
No 310
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=25.69 E-value=72 Score=36.53 Aligned_cols=59 Identities=12% Similarity=-0.003 Sum_probs=47.2
Q ss_pred ChHHHHHHHHHHHhhhccChHHHHHHhhhhhHHHHHHHhcCCChhHHHHHHHHHhhhhc
Q 001385 422 APEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAF 480 (1088)
Q Consensus 422 ~~~~~~~~l~~L~~L~~~sd~~~~~v~~~g~lp~L~~Ll~~~~~~vq~~Al~algnla~ 480 (1088)
++..+..++.=+++++.+-......+-+.|+-.++.+|+.+.+++|+..||.|+.-+..
T Consensus 418 d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 418 EKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred CcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 34555667777788877666667777778999999999999999999999999886643
No 311
>3u1t_A DMMA haloalkane dehalogenase; alpha/beta-hydrolase, hydrolase; 2.20A {Unidentified}
Probab=25.53 E-value=98 Score=31.89 Aligned_cols=51 Identities=18% Similarity=0.175 Sum_probs=30.0
Q ss_pred CCceEEEecCCCc----------hHHHHHHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhc
Q 001385 538 QGLRILSMDGGGM----------KGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAV 592 (1088)
Q Consensus 538 ~~~riLsLdGGG~----------RG~~~~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~ 592 (1088)
++++|+++|==|. .---.+..+.++.+.++.. .+ .++|.|.||.+|+.++.
T Consensus 55 ~g~~v~~~d~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~lvGhS~Gg~~a~~~a~ 115 (309)
T 3u1t_A 55 AGYRAVAPDLIGMGDSAKPDIEYRLQDHVAYMDGFIDALGLD---DM-VLVIHDWGSVIGMRHAR 115 (309)
T ss_dssp TTCEEEEECCTTSTTSCCCSSCCCHHHHHHHHHHHHHHHTCC---SE-EEEEEEHHHHHHHHHHH
T ss_pred CCCEEEEEccCCCCCCCCCCcccCHHHHHHHHHHHHHHcCCC---ce-EEEEeCcHHHHHHHHHH
Confidence 3578888874221 1111333444444444422 22 57899999999998875
No 312
>3ls2_A S-formylglutathione hydrolase; psychrophilic organism; 2.20A {Pseudoalteromonas haloplanktis} SCOP: c.69.1.0
Probab=25.52 E-value=61 Score=33.56 Aligned_cols=33 Identities=24% Similarity=0.258 Sum_probs=22.4
Q ss_pred HHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhc
Q 001385 557 QILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAV 592 (1088)
Q Consensus 557 ~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~ 592 (1088)
.++..+++.... .+.+ .++|.|+||.+|+.++.
T Consensus 126 ~~~~~i~~~~~~--~~~~-~l~G~S~GG~~a~~~a~ 158 (280)
T 3ls2_A 126 ELPALIEQHFPV--TSTK-AISGHSMGGHGALMIAL 158 (280)
T ss_dssp HHHHHHHHHSSE--EEEE-EEEEBTHHHHHHHHHHH
T ss_pred HHHHHHHhhCCC--CCCe-EEEEECHHHHHHHHHHH
Confidence 445556665331 1222 79999999999999875
No 313
>2r11_A Carboxylesterase NP; 2632844, putative hydrolase, structural genomics, joint center for structural genomics, JCSG; HET: MSE PGE; 1.96A {Bacillus subtilis}
Probab=25.27 E-value=88 Score=32.78 Aligned_cols=50 Identities=18% Similarity=0.165 Sum_probs=30.9
Q ss_pred CceEEEecCCCc----hH-------HHHHHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhc
Q 001385 539 GLRILSMDGGGM----KG-------LATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAV 592 (1088)
Q Consensus 539 ~~riLsLdGGG~----RG-------~~~~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~ 592 (1088)
+++|+++|-=|. .+ -..+..+.++.+.++.. .+ .++|.|+||.+|+.++.
T Consensus 93 g~~vi~~D~~G~gG~s~~~~~~~~~~~~~~~l~~~l~~l~~~---~~-~lvG~S~Gg~ia~~~a~ 153 (306)
T 2r11_A 93 KYRTYAVDIIGDKNKSIPENVSGTRTDYANWLLDVFDNLGIE---KS-HMIGLSLGGLHTMNFLL 153 (306)
T ss_dssp HSEEEEECCTTSSSSCEECSCCCCHHHHHHHHHHHHHHTTCS---SE-EEEEETHHHHHHHHHHH
T ss_pred CCEEEEecCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCC---ce-eEEEECHHHHHHHHHHH
Confidence 478899884221 11 12334445555554422 22 68999999999999875
No 314
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=24.73 E-value=1.3e+02 Score=38.04 Aligned_cols=131 Identities=15% Similarity=0.087 Sum_probs=85.7
Q ss_pred hhHHHHhccccCCchhh--HHHHHCCCcHHHHHHhccCChHHHHHHHHHHHhhhccChHHHHHHhhhhhHHHHHHHhcCC
Q 001385 386 EQACSALSSLAGDVSVA--MLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHK 463 (1088)
Q Consensus 386 ~~a~~~L~~L~~~~~~~--~~l~~~~~~~~Ll~lL~~~~~~~~~~~l~~L~~L~~~sd~~~~~v~~~g~lp~L~~Ll~~~ 463 (1088)
+.|+.+++.|+...... ...+-...++.++....+....++..+-.++..++..-...+ -..++|.|...+.+.
T Consensus 70 ~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a----~~~~~~~~~~~~~~~ 145 (986)
T 2iw3_A 70 ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVA----IKALLPHLTNAIVET 145 (986)
T ss_dssp HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGG----HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHH----HHHHHHHHHHHhccc
Confidence 88888888888544332 334444677777777666655555444444444442212211 146688888877754
Q ss_pred -ChhHHHHHHHHHhhhhccccccceeecccChhhhhHhhhcCCchhHHHHHHHHHHhhc
Q 001385 464 -NPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILG 521 (1088)
Q Consensus 464 -~~~vq~~Al~algnla~~~~~~~~~v~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~ 521 (1088)
++..+..|+..++.++.....+.... -..++|.+-..+....++|.+.|..++..+.
T Consensus 146 ~kw~~k~~~l~~~~~~~~~~~~~~~~~-~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~ 203 (986)
T 2iw3_A 146 NKWQEKIAILAAFSAMVDAAKDQVALR-MPELIPVLSETMWDTKKEVKAAATAAMTKAT 203 (986)
T ss_dssp CCHHHHHHHHHHHHHHHHHSHHHHHHH-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHG
T ss_pred cchHHHHHHHHHHHHHHHHhHHHHHHh-ccchhcchHhhcccCcHHHHHHHHHHHHHHH
Confidence 78899999999999986553332211 2367788888888999999998888776654
No 315
>3fob_A Bromoperoxidase; structural genomics, IDP00046, bacillus ANT peroxidase, oxidoreductase; 1.74A {Bacillus anthracis str} SCOP: c.69.1.0
Probab=24.38 E-value=1.1e+02 Score=31.59 Aligned_cols=32 Identities=16% Similarity=0.092 Sum_probs=20.6
Q ss_pred HHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHh
Q 001385 556 VQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALA 591 (1088)
Q Consensus 556 ~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~ 591 (1088)
+.-+.++.+.++.. .+ .++|.|+||.+++.++
T Consensus 81 a~dl~~ll~~l~~~---~~-~lvGhS~GG~i~~~~~ 112 (281)
T 3fob_A 81 TSDLHQLLEQLELQ---NV-TLVGFSMGGGEVARYI 112 (281)
T ss_dssp HHHHHHHHHHTTCC---SE-EEEEETTHHHHHHHHH
T ss_pred HHHHHHHHHHcCCC---cE-EEEEECccHHHHHHHH
Confidence 34455666665532 22 5889999998776654
No 316
>3ia2_A Arylesterase; alpha-beta hydrolase fold, transition state analog, hydrolas oxidoreductase, peroxidase; 1.65A {Pseudomonas fluorescens} SCOP: c.69.1.12 PDB: 1va4_A 3t52_A* 3t4u_A* 3hi4_A 3hea_A
Probab=24.35 E-value=1.1e+02 Score=31.06 Aligned_cols=50 Identities=16% Similarity=0.221 Sum_probs=27.2
Q ss_pred CCceEEEecC---CCc------hHH-HHHHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHh
Q 001385 538 QGLRILSMDG---GGM------KGL-ATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALA 591 (1088)
Q Consensus 538 ~~~riLsLdG---GG~------RG~-~~~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~ 591 (1088)
++++|+++|= |.. ..+ ..+.-+.++.+.++.. .+ .++|.|+||.+++.++
T Consensus 45 ~g~~vi~~D~~G~G~S~~~~~~~~~~~~a~d~~~~l~~l~~~---~~-~lvGhS~GG~~~~~~~ 104 (271)
T 3ia2_A 45 RGYRTIAFDRRGFGRSDQPWTGNDYDTFADDIAQLIEHLDLK---EV-TLVGFSMGGGDVARYI 104 (271)
T ss_dssp TTCEEEEECCTTSTTSCCCSSCCSHHHHHHHHHHHHHHHTCC---SE-EEEEETTHHHHHHHHH
T ss_pred CCceEEEecCCCCccCCCCCCCCCHHHHHHHHHHHHHHhCCC---Cc-eEEEEcccHHHHHHHH
Confidence 3578888873 111 011 1233444555554432 12 5889999998666543
No 317
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=24.34 E-value=24 Score=41.63 Aligned_cols=22 Identities=32% Similarity=0.416 Sum_probs=18.7
Q ss_pred CceeeecccccCCCccCCCCCC
Q 001385 969 GIRLSLLHGISGIGKSMPGATF 990 (1088)
Q Consensus 969 ~~~~~~~~~~~~~~~~~~~~~~ 990 (1088)
..++..+.|+||+|||..|..+
T Consensus 151 ~~~vv~I~G~gGvGKTtLA~~v 172 (549)
T 2a5y_B 151 DSFFLFLHGRAGSGKSVIASQA 172 (549)
T ss_dssp SSEEEEEECSTTSSHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHH
Confidence 5789999999999999877653
No 318
>3qat_A Malonyl COA-acyl carrier protein transacylase; seattle structural genomics center for infectious disease, S bartonella, CAT-scratch disease; 1.60A {Bartonella henselae}
Probab=24.21 E-value=83 Score=34.03 Aligned_cols=52 Identities=17% Similarity=0.325 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhcCCCCHHHHHHHHHHh
Q 001385 554 ATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNL 607 (1088)
Q Consensus 554 ~~~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~~~~s~~e~~~~y~~~ 607 (1088)
+++.+.+.+.+. |.++....|+++|.|.|=+.|+..+ +-++.++..++...-
T Consensus 72 ~q~al~~~l~~~-Gi~p~~~P~~v~GHSlGE~aAa~~a-G~ls~~da~~lv~~R 123 (318)
T 3qat_A 72 VSMAVIRVMEQL-GLNVEKKVKFVAGHSLGEYSALCAA-GTFSLTDTARLLRIR 123 (318)
T ss_dssp HHHHHHHHHHHT-TCCHHHHCSEEEESTTHHHHHHHHT-TSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCcCCCCCEEEECCHHHHHHHHHh-CCCCHHHHHHHHHHH
Confidence 445555556554 5443223699999999999988875 458999988876543
No 319
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=23.69 E-value=77 Score=27.84 Aligned_cols=45 Identities=11% Similarity=0.013 Sum_probs=25.0
Q ss_pred CCCCCccccccCccccEEeCcCCCCCCCCccccccCCCCccEEEccC
Q 001385 137 GSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCG 183 (1088)
Q Consensus 137 i~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~ 183 (1088)
++.+-...|.++.+|+.+.|-.+ +..+-...|.++.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~--v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN--IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT--SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc--hheEcHHHHhccCCccEEEEcC
Confidence 33333355666666666666655 2444445566666666666554
No 320
>1jfr_A Lipase; serine hydrolase; 1.90A {Streptomyces exfoliatus} SCOP: c.69.1.16
Probab=23.67 E-value=1.2e+02 Score=30.96 Aligned_cols=53 Identities=21% Similarity=0.278 Sum_probs=30.6
Q ss_pred CCceEEEecCCCc--hH-H---HHHHHHHHHHHhcCCCCCcccc----eEEecchHHHHHHHHhc
Q 001385 538 QGLRILSMDGGGM--KG-L---ATVQILKEIEKGTGKRIHELFD----LVCGTSTGGMLAIALAV 592 (1088)
Q Consensus 538 ~~~riLsLdGGG~--RG-~---~~~~vL~~Le~~~~~~i~~~FD----li~GTStG~iiA~~l~~ 592 (1088)
.|++|+++|--|. .. - -...+++.+.+. ..+.+.+| .++|.|+||.+|+.++.
T Consensus 80 ~G~~v~~~d~~g~g~~~~~~~~d~~~~~~~l~~~--~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~ 142 (262)
T 1jfr_A 80 QGFVVFTIDTNTTLDQPDSRGRQLLSALDYLTQR--SSVRTRVDATRLGVMGHSMGGGGSLEAAK 142 (262)
T ss_dssp TTCEEEEECCSSTTCCHHHHHHHHHHHHHHHHHT--STTGGGEEEEEEEEEEETHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCCCchhHHHHHHHHHHHHhc--cccccccCcccEEEEEEChhHHHHHHHHh
Confidence 4789999984331 11 1 122344555441 11111222 58899999999999874
No 321
>3dkr_A Esterase D; alpha beta hydrolase, mechanism, catalytic triad, rotation; 1.60A {Lactobacillus rhamnosus} SCOP: c.69.1.0 PDB: 3dlt_A 3dyi_A 3dyv_A 3e1g_A
Probab=23.22 E-value=68 Score=31.90 Aligned_cols=17 Identities=35% Similarity=0.563 Sum_probs=15.5
Q ss_pred eEEecchHHHHHHHHhc
Q 001385 576 LVCGTSTGGMLAIALAV 592 (1088)
Q Consensus 576 li~GTStG~iiA~~l~~ 592 (1088)
.++|.|+||.+|+.++.
T Consensus 96 ~l~G~S~Gg~~a~~~a~ 112 (251)
T 3dkr_A 96 FVFGLSLGGIFAMKALE 112 (251)
T ss_dssp EEEESHHHHHHHHHHHH
T ss_pred EEEEechHHHHHHHHHH
Confidence 78999999999999875
No 322
>3qyj_A ALR0039 protein; alpha/beta fold, hydrolase; 1.78A {Nostoc SP}
Probab=22.67 E-value=1.3e+02 Score=31.43 Aligned_cols=17 Identities=35% Similarity=0.491 Sum_probs=15.2
Q ss_pred eEEecchHHHHHHHHhc
Q 001385 576 LVCGTSTGGMLAIALAV 592 (1088)
Q Consensus 576 li~GTStG~iiA~~l~~ 592 (1088)
.++|.|+||++|..++.
T Consensus 99 ~l~GhS~Gg~ia~~~a~ 115 (291)
T 3qyj_A 99 YVVGHDRGARVAHRLAL 115 (291)
T ss_dssp EEEEETHHHHHHHHHHH
T ss_pred EEEEEChHHHHHHHHHH
Confidence 57899999999999974
No 323
>3im8_A Malonyl acyl carrier protein transacylase; fatty acid synthesis, malonyl-COA, acyl carrier protein TRAN (MCAT), FABD, acyltransferase; 2.10A {Streptococcus pneumoniae}
Probab=22.14 E-value=1.3e+02 Score=32.18 Aligned_cols=49 Identities=20% Similarity=0.373 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhcCCCCHHHHHHHHHHhh
Q 001385 554 ATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLG 608 (1088)
Q Consensus 554 ~~~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~~~~s~~e~~~~y~~~~ 608 (1088)
+++.+.+.+++ .|.+ .|.++|.|.|=+.|+..+ +-++.++..++...-+
T Consensus 68 ~~~al~~~l~~-~Gi~----P~~v~GHSlGE~aAa~~a-G~ls~~da~~lv~~Rg 116 (307)
T 3im8_A 68 TSVAIYRLLQE-KGYQ----PDMVAGLSLGEYSALVAS-GALDFEDAVALVAKRG 116 (307)
T ss_dssp HHHHHHHHHHH-TTCC----CSEEEESTTHHHHHHHHT-TSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCC----ceEEEccCHHHHHHHHHc-CCCCHHHHHHHHHHHH
Confidence 34555555555 3543 689999999999888875 5689999988765433
No 324
>3bdv_A Uncharacterized protein DUF1234; DUF1234 family protein, alpha/beta-hydrolases fold, structur genomics; HET: MSE; 1.66A {Pectobacterium atrosepticum SCRI1043}
Probab=22.06 E-value=74 Score=30.65 Aligned_cols=18 Identities=22% Similarity=0.388 Sum_probs=16.0
Q ss_pred eEEecchHHHHHHHHhcC
Q 001385 576 LVCGTSTGGMLAIALAVK 593 (1088)
Q Consensus 576 li~GTStG~iiA~~l~~~ 593 (1088)
.++|.|+||.+|+.++..
T Consensus 77 ~l~G~S~Gg~~a~~~a~~ 94 (191)
T 3bdv_A 77 ILIGHSFGALAACHVVQQ 94 (191)
T ss_dssp EEEEETHHHHHHHHHHHT
T ss_pred EEEEEChHHHHHHHHHHh
Confidence 789999999999998753
No 325
>4b6g_A Putative esterase; hydrolase, formaldehyde detoxification, alpha/beta serine HY; 1.40A {Neisseria meningitidis MC58}
Probab=21.98 E-value=72 Score=33.15 Aligned_cols=32 Identities=31% Similarity=0.316 Sum_probs=21.3
Q ss_pred HHHHHHHhcCCCCCcccceEEecchHHHHHHHHhc
Q 001385 558 ILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAV 592 (1088)
Q Consensus 558 vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~ 592 (1088)
+...+++.... .+.+ .|+|.|+||.+|+.++.
T Consensus 133 ~~~~i~~~~~~--~~~~-~l~G~S~GG~~a~~~a~ 164 (283)
T 4b6g_A 133 LPRLIEKHFPT--NGKR-SIMGHSMGGHGALVLAL 164 (283)
T ss_dssp HHHHHHHHSCE--EEEE-EEEEETHHHHHHHHHHH
T ss_pred HHHHHHHhCCC--CCCe-EEEEEChhHHHHHHHHH
Confidence 44555555331 1222 79999999999999875
No 326
>2fuk_A XC6422 protein; A/B hydrolase, structural genomics, X-RAY diffraction; 1.60A {Xanthomonas campestris} SCOP: c.69.1.36
Probab=21.91 E-value=1.3e+02 Score=29.40 Aligned_cols=51 Identities=10% Similarity=0.119 Sum_probs=30.0
Q ss_pred CCceEEEecCCCch------------HHHHHHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhc
Q 001385 538 QGLRILSMDGGGMK------------GLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAV 592 (1088)
Q Consensus 538 ~~~riLsLdGGG~R------------G~~~~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~ 592 (1088)
.|++++++|=-|.- ----..+++.+.+..+. +. =.++|.|.||.+|+.++.
T Consensus 68 ~g~~v~~~d~~g~g~s~~~~~~~~~~~~d~~~~~~~l~~~~~~---~~-i~l~G~S~Gg~~a~~~a~ 130 (220)
T 2fuk_A 68 LGITVVRFNFRSVGTSAGSFDHGDGEQDDLRAVAEWVRAQRPT---DT-LWLAGFSFGAYVSLRAAA 130 (220)
T ss_dssp TTCEEEEECCTTSTTCCSCCCTTTHHHHHHHHHHHHHHHHCTT---SE-EEEEEETHHHHHHHHHHH
T ss_pred CCCeEEEEecCCCCCCCCCcccCchhHHHHHHHHHHHHhcCCC---Cc-EEEEEECHHHHHHHHHHh
Confidence 36788888743311 11123344455444321 11 268999999999999874
No 327
>1tca_A Lipase; hydrolase(carboxylic esterase); HET: NAG; 1.55A {Candida antarctica} SCOP: c.69.1.17 PDB: 1lbs_A* 1lbt_A* 1tcb_A* 1tcc_A*
Probab=21.36 E-value=1.3e+02 Score=32.50 Aligned_cols=50 Identities=18% Similarity=0.160 Sum_probs=29.3
Q ss_pred CCceEEEecCCC--chHH-----HHHHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHh
Q 001385 538 QGLRILSMDGGG--MKGL-----ATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALA 591 (1088)
Q Consensus 538 ~~~riLsLdGGG--~RG~-----~~~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~ 591 (1088)
.|++++++|=.| ...+ .-...++++.+..+. +.+ .++|.|.||++|..++
T Consensus 59 ~G~~v~~~d~~g~g~~~~~~~~~~l~~~i~~~~~~~g~---~~v-~lVGhS~GG~va~~~~ 115 (317)
T 1tca_A 59 LGYTPCWISPPPFMLNDTQVNTEYMVNAITALYAGSGN---NKL-PVLTWSQGGLVAQWGL 115 (317)
T ss_dssp TTCEEEEECCTTTTCSCHHHHHHHHHHHHHHHHHHTTS---CCE-EEEEETHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCCcHHHHHHHHHHHHHHHHHHhCC---CCE-EEEEEChhhHHHHHHH
Confidence 367888888432 2111 123344444444441 122 6889999999998765
No 328
>2cuy_A Malonyl COA-[acyl carrier protein] transacylase; transferase, structural genomics, NPPSFA; 2.10A {Thermus thermophilus}
Probab=21.25 E-value=1.6e+02 Score=31.54 Aligned_cols=50 Identities=22% Similarity=0.229 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhcCCCCHHHHHHHHHHhh
Q 001385 554 ATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLG 608 (1088)
Q Consensus 554 ~~~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~~~~s~~e~~~~y~~~~ 608 (1088)
+++.+.+.+++..|.+ .|.++|.|.|=+.|+..+ +-++.++..++-..-+
T Consensus 66 ~~~al~~~l~~~~Gi~----P~~v~GHSlGE~aAa~~A-G~ls~edal~lv~~Rg 115 (305)
T 2cuy_A 66 AGYAAYRAFLEAGGKP----PALAAGHSLGEWTAHVAA-GTLELEDALRLVRLRG 115 (305)
T ss_dssp HHHHHHHHHHHTTCCC----CSEEEESTHHHHHHHHHT-TSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCC----CcEEEECCHHHHHHHHHh-CCCCHHHHHHHHHHHH
Confidence 3455555565534543 689999999999988875 4589999888755433
No 329
>3c8d_A Enterochelin esterase; alpha-beta-alpha sandwich, IROD, iron aquisition, structural genomics, PSI-2, protein structure initiative; HET: CIT; 1.80A {Shigella flexneri 2a str} SCOP: b.1.18.20 c.69.1.2 PDB: 2b20_A 3c87_A* 3c8h_A 3mga_A*
Probab=21.21 E-value=1.4e+02 Score=33.50 Aligned_cols=55 Identities=15% Similarity=0.051 Sum_probs=32.2
Q ss_pred CceEEEecCCCc--hH-------HHH----HHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhcC
Q 001385 539 GLRILSMDGGGM--KG-------LAT----VQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVK 593 (1088)
Q Consensus 539 ~~riLsLdGGG~--RG-------~~~----~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~~ 593 (1088)
++.|+++|.+|. |+ -+. -.++..+++..+......-=.|+|.|+||.+|+.++..
T Consensus 229 p~iVV~~d~~~~~~r~~~~~~~~~~~~~l~~el~~~i~~~~~~~~d~~~~~l~G~S~GG~~al~~a~~ 296 (403)
T 3c8d_A 229 PAVYVLIDAIDTTHRAHELPCNADFWLAVQQELLPLVKVIAPFSDRADRTVVAGQSFGGLSALYAGLH 296 (403)
T ss_dssp SCEEEEECCCSHHHHHHHSSSCHHHHHHHHHTHHHHHHHHSCCCCCGGGCEEEEETHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCccccccCCChHHHHHHHHHHHHHHHHHHCCCCCCCCceEEEEECHHHHHHHHHHHh
Confidence 567889987652 21 111 12445555554321111122699999999999998753
No 330
>3ptw_A Malonyl COA-acyl carrier protein transacylase; structural genomics, protein structure initiative; 2.10A {Clostridium perfringens}
Probab=21.17 E-value=1.4e+02 Score=32.50 Aligned_cols=49 Identities=22% Similarity=0.433 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhcCCCCHHHHHHHHHHhh
Q 001385 554 ATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLG 608 (1088)
Q Consensus 554 ~~~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~~~~s~~e~~~~y~~~~ 608 (1088)
+++.+.+.|++ .|.+ .|.++|.|.|=+.|+..+ +-++.++..++...-+
T Consensus 69 ~q~al~~ll~~-~Gi~----P~~v~GHSlGE~aAa~~A-G~ls~~dal~lv~~Rg 117 (336)
T 3ptw_A 69 TNMAILTALDK-LGVK----SHISCGLSLGEYSALIHS-GAINFEDGVKLVKKRG 117 (336)
T ss_dssp HHHHHHHHHHH-TTCC----CSEEEESTTHHHHHHHHT-TSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCC----CCEEEEcCHhHHHHHHHh-CCCCHHHHHHHHHHHH
Confidence 34455555555 4543 689999999999998875 4589999988765433
No 331
>1k8q_A Triacylglycerol lipase, gastric; APHA beta hydrolase fold, hydrolase; HET: NAG BOG C11; 2.70A {Canis lupus familiaris} SCOP: c.69.1.6 PDB: 1hlg_A*
Probab=21.14 E-value=1.2e+02 Score=32.53 Aligned_cols=31 Identities=23% Similarity=0.235 Sum_probs=21.1
Q ss_pred HHHHHHHhcCCCCCcccceEEecchHHHHHHHHhc
Q 001385 558 ILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAV 592 (1088)
Q Consensus 558 vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~ 592 (1088)
+++.+.+.++.. .+ .++|.|+||.+|+.++.
T Consensus 134 ~i~~~~~~~~~~---~~-~lvG~S~Gg~ia~~~a~ 164 (377)
T 1k8q_A 134 TIDFILKKTGQD---KL-HYVGHSQGTTIGFIAFS 164 (377)
T ss_dssp HHHHHHHHHCCS---CE-EEEEETHHHHHHHHHHH
T ss_pred HHHHHHHhcCcC---ce-EEEEechhhHHHHHHHh
Confidence 444454454421 22 68899999999999875
No 332
>2uz0_A Esterase, tributyrin esterase; alpha/beta hydrolase, hydrolase, A virulence facto LUNG infection; HET: MSE; 1.7A {Streptococcus pneumoniae}
Probab=21.14 E-value=1.4e+02 Score=30.15 Aligned_cols=17 Identities=35% Similarity=0.596 Sum_probs=15.1
Q ss_pred eEEecchHHHHHHHHhc
Q 001385 576 LVCGTSTGGMLAIALAV 592 (1088)
Q Consensus 576 li~GTStG~iiA~~l~~ 592 (1088)
.++|.|+||.+|+.++.
T Consensus 120 ~l~G~S~Gg~~a~~~a~ 136 (263)
T 2uz0_A 120 FIAGLSMGGYGCFKLAL 136 (263)
T ss_dssp EEEEETHHHHHHHHHHH
T ss_pred EEEEEChHHHHHHHHHh
Confidence 68999999999998863
No 333
>3fla_A RIFR; alpha-beta hydrolase thioesterase, hydrolase; HET: MSE; 1.80A {Amycolatopsis mediterranei} PDB: 3flb_A*
Probab=20.96 E-value=1.1e+02 Score=30.75 Aligned_cols=18 Identities=28% Similarity=0.571 Sum_probs=15.9
Q ss_pred eEEecchHHHHHHHHhcC
Q 001385 576 LVCGTSTGGMLAIALAVK 593 (1088)
Q Consensus 576 li~GTStG~iiA~~l~~~ 593 (1088)
.++|.|.||.+|+.++..
T Consensus 89 ~lvG~S~Gg~ia~~~a~~ 106 (267)
T 3fla_A 89 ALFGHSMGAIIGYELALR 106 (267)
T ss_dssp EEEEETHHHHHHHHHHHH
T ss_pred EEEEeChhHHHHHHHHHh
Confidence 789999999999998753
No 334
>3e4d_A Esterase D; S-formylglutathione hydrolase, hydrolase fold family, catalytic triad, kinetics, proposed reaction mechanism; HET: MSE; 2.01A {Agrobacterium tumefaciens} SCOP: c.69.1.0
Probab=20.79 E-value=89 Score=32.13 Aligned_cols=34 Identities=21% Similarity=0.275 Sum_probs=22.4
Q ss_pred HHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhc
Q 001385 557 QILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAV 592 (1088)
Q Consensus 557 ~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~ 592 (1088)
.+++.+++..+... +. =.++|.|+||.+|+.++.
T Consensus 126 ~~~~~~~~~~~~d~-~~-i~l~G~S~GG~~a~~~a~ 159 (278)
T 3e4d_A 126 ELPALIGQHFRADM-SR-QSIFGHSMGGHGAMTIAL 159 (278)
T ss_dssp HHHHHHHHHSCEEE-EE-EEEEEETHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCc-CC-eEEEEEChHHHHHHHHHH
Confidence 35566666543210 11 168999999999999875
No 335
>1mla_A Malonyl-coenzyme A acyl carrier protein transacylase; acyltransferase; 1.50A {Escherichia coli} SCOP: c.19.1.1 d.58.23.1 PDB: 2g2o_A 2g1h_A 2g2y_A 2g2z_A* 3h0p_A 3hjv_A*
Probab=20.76 E-value=1.6e+02 Score=31.48 Aligned_cols=48 Identities=19% Similarity=0.296 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhcCCCCHHHHHHHHHH
Q 001385 554 ATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKN 606 (1088)
Q Consensus 554 ~~~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~~~~s~~e~~~~y~~ 606 (1088)
+++...+.+++..|.+ .|.++|.|.|=+.|+..+ +-++.++..++-..
T Consensus 69 ~~~al~~~l~~~~Gi~----P~~v~GhSlGE~aAa~~a-G~ls~~dal~lv~~ 116 (309)
T 1mla_A 69 ASVALYRVWQQQGGKA----PAMMAGHSLGEYSALVCA-GVIDFADAVRLVEM 116 (309)
T ss_dssp HHHHHHHHHHHTTCCC----CSEEEESTHHHHHHHHHT-TSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCC----CCEEEECCHHHHHHHHHh-CCCCHHHHHHHHHH
Confidence 3455555555532543 689999999999888875 45899998877554
No 336
>3vis_A Esterase; alpha/beta-hydrolase fold, polyethylene terephthal hydrolase; HET: PE4; 1.76A {Thermobifida alba}
Probab=20.58 E-value=81 Score=33.46 Aligned_cols=55 Identities=22% Similarity=0.279 Sum_probs=32.3
Q ss_pred CCCceEEEecCCCc---hHH---HHHHHHHHHHHh----cCCCCC-cccceEEecchHHHHHHHHhc
Q 001385 537 KQGLRILSMDGGGM---KGL---ATVQILKEIEKG----TGKRIH-ELFDLVCGTSTGGMLAIALAV 592 (1088)
Q Consensus 537 ~~~~riLsLdGGG~---RG~---~~~~vL~~Le~~----~~~~i~-~~FDli~GTStG~iiA~~l~~ 592 (1088)
.+|+.|+++|.-|. .+- -...+++.+.+. ....+. +.+ .++|.|.||.+|+.++.
T Consensus 121 ~~G~~vv~~d~~g~g~s~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~v-~l~G~S~GG~~a~~~a~ 186 (306)
T 3vis_A 121 SHGFVVIAIDTNTTLDQPDSRARQLNAALDYMLTDASSAVRNRIDASRL-AVMGHSMGGGGTLRLAS 186 (306)
T ss_dssp TTTEEEEEECCSSTTCCHHHHHHHHHHHHHHHHHTSCHHHHTTEEEEEE-EEEEETHHHHHHHHHHH
T ss_pred hCCCEEEEecCCCCCCCcchHHHHHHHHHHHHHhhcchhhhccCCcccE-EEEEEChhHHHHHHHHh
Confidence 35799999997553 111 123344444443 000111 112 68999999999999875
No 337
>3d0k_A Putative poly(3-hydroxybutyrate) depolymerase LPQ; alpha-beta-alpha sandwich, structural genomics, PSI-2; 1.83A {Bordetella parapertussis 12822}
Probab=20.58 E-value=1.2e+02 Score=32.01 Aligned_cols=35 Identities=20% Similarity=0.291 Sum_probs=22.5
Q ss_pred HHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhc
Q 001385 556 VQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAV 592 (1088)
Q Consensus 556 ~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~ 592 (1088)
..+++.+.+..+..... =+++|.|+||.+|+.++.
T Consensus 125 ~~~~~~l~~~~~~~~~~--i~l~G~S~GG~~a~~~a~ 159 (304)
T 3d0k_A 125 ARVLANIRAAEIADCEQ--VYLFGHSAGGQFVHRLMS 159 (304)
T ss_dssp HHHHHHHHHTTSCCCSS--EEEEEETHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCCc--EEEEEeChHHHHHHHHHH
Confidence 44555665543222111 168999999999999874
No 338
>2pl5_A Homoserine O-acetyltransferase; alpha/beta hydrolase superfa transferase; 2.20A {Leptospira interrogans} SCOP: c.69.1.40
Probab=20.53 E-value=1.5e+02 Score=31.64 Aligned_cols=33 Identities=27% Similarity=0.356 Sum_probs=21.3
Q ss_pred HHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhc
Q 001385 557 QILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAV 592 (1088)
Q Consensus 557 ~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~ 592 (1088)
..+.++.+.++.. .+=.++|.|.||.+|+.++.
T Consensus 132 ~dl~~~l~~l~~~---~~~~lvGhS~Gg~ia~~~a~ 164 (366)
T 2pl5_A 132 KAQKLLVESLGIE---KLFCVAGGSMGGMQALEWSI 164 (366)
T ss_dssp HHHHHHHHHTTCS---SEEEEEEETHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCc---eEEEEEEeCccHHHHHHHHH
Confidence 3444444554422 12148999999999999874
No 339
>1ehy_A Protein (soluble epoxide hydrolase); alpha/beta hydrolase fold, epoxide degradation, epichlorohydrin; 2.10A {Agrobacterium tumefaciens} SCOP: c.69.1.11
Probab=20.19 E-value=83 Score=32.95 Aligned_cols=33 Identities=9% Similarity=0.044 Sum_probs=23.7
Q ss_pred HHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhc
Q 001385 556 VQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAV 592 (1088)
Q Consensus 556 ~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~ 592 (1088)
+.-+.++.+.++.. .+ .++|.|.||.+|..++.
T Consensus 86 a~dl~~ll~~l~~~---~~-~lvGhS~Gg~va~~~A~ 118 (294)
T 1ehy_A 86 ADDQAALLDALGIE---KA-YVVGHDFAAIVLHKFIR 118 (294)
T ss_dssp HHHHHHHHHHTTCC---CE-EEEEETHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCC---CE-EEEEeChhHHHHHHHHH
Confidence 44556666666632 23 68999999999999875
No 340
>1jjf_A Xylanase Z, endo-1,4-beta-xylanase Z, 1,4-beta-D-xylan; feruloyl esterase, ferulic acid esterase, FAE_XYNZ, XYNZ, structural genomics; 1.75A {Clostridium thermocellum} SCOP: c.69.1.2 PDB: 1jt2_A*
Probab=20.01 E-value=1.3e+02 Score=30.91 Aligned_cols=56 Identities=16% Similarity=0.207 Sum_probs=32.2
Q ss_pred CCceEEEecCCCch-----HH--H----HHHHHHHHHHhcCCCCCcccceEEecchHHHHHHHHhcC
Q 001385 538 QGLRILSMDGGGMK-----GL--A----TVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVK 593 (1088)
Q Consensus 538 ~~~riLsLdGGG~R-----G~--~----~~~vL~~Le~~~~~~i~~~FDli~GTStG~iiA~~l~~~ 593 (1088)
.++.|++.|+.|.. +. + .-.++..+++..+..+...-=.++|.|+||.+|+.++..
T Consensus 99 ~~~~vv~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~i~l~G~S~GG~~a~~~a~~ 165 (268)
T 1jjf_A 99 KPLIIVTPNTNAAGPGIADGYENFTKDLLNSLIPYIESNYSVYTDREHRAIAGLSMGGGQSFNIGLT 165 (268)
T ss_dssp CCCEEEEECCCCCCTTCSCHHHHHHHHHHHTHHHHHHHHSCBCCSGGGEEEEEETHHHHHHHHHHHT
T ss_pred CCEEEEEeCCCCCCccccccHHHHHHHHHHHHHHHHHhhcCCCCCCCceEEEEECHHHHHHHHHHHh
Confidence 46888888876421 11 1 123344445443321011112699999999999998753
Done!